HHsearch alignment for GI: 254780809 and conserved domain: cd01854

>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.35  E-value=6.1e-07  Score=67.96  Aligned_cols=77  Identities=30%  Similarity=0.331  Sum_probs=51.6

Q ss_pred             CCCEEEECCCCCCHHHHHHHHHCCHHCC---CCCCC----CCCEEECCCCCCCCCEEEEEEECCHHCCCC-HHHHHHHHH
Q ss_conf             2302431146631888999985520002---34546----872110001245683589995081000241-035666678
Q gi|254780809|r  219 GYKIVILGHSNAGKSSLFNALAKKDVAI---VTDIP----GTTRDVLTIDLDLEGYLVKISDTAGIRETD-DIVEKEGIK  290 (440)
Q Consensus       219 g~~v~i~G~pN~GKSSL~N~L~~~~~aI---Vs~~~----GTTRD~i~~~~~i~g~~~~l~DTaGir~t~-d~IE~~GI~  290 (440)
T Consensus       161 ~k~~v~~G~SGvGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~--~~L~~l~~-gg~iiDTPG~r~~~l~~~~~~~l~  237 (287)
T cd01854         161 GKTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTH--RELFPLPG-GGLLIDTPGFREFGLLHIDPEELA  237 (287)
T ss_pred             CCEEEEECCCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEEE--EEEEECCC-CCEEEECCCCCCCCCCCCCHHHHH
T ss_conf             988999889988889999874621212566667760898501415--79999289-958986898763567778989998


Q ss_pred             HHHHHHHH
Q ss_conf             88998503
Q gi|254780809|r  291 RTFLEVEN  298 (440)
Q Consensus       291 ra~~~i~~  298 (440)
T Consensus       238 ~~F~ei~~  245 (287)
T cd01854         238 HYFPEFRE  245 (287)
T ss_pred             HHCHHHHH
T ss_conf             86878999