HHsearch alignment for GI: 254780809 and conserved domain: cd01854
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.35 E-value=6.1e-07 Score=67.96 Aligned_cols=77 Identities=30% Similarity=0.331 Sum_probs=51.6
Q ss_pred CCCEEEECCCCCCHHHHHHHHHCCHHCC---CCCCC----CCCEEECCCCCCCCCEEEEEEECCHHCCCC-HHHHHHHHH
Q ss_conf 2302431146631888999985520002---34546----872110001245683589995081000241-035666678
Q gi|254780809|r 219 GYKIVILGHSNAGKSSLFNALAKKDVAI---VTDIP----GTTRDVLTIDLDLEGYLVKISDTAGIRETD-DIVEKEGIK 290 (440)
Q Consensus 219 g~~v~i~G~pN~GKSSL~N~L~~~~~aI---Vs~~~----GTTRD~i~~~~~i~g~~~~l~DTaGir~t~-d~IE~~GI~ 290 (440)
T Consensus 161 ~k~~v~~G~SGvGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~--~~L~~l~~-gg~iiDTPG~r~~~l~~~~~~~l~ 237 (287)
T cd01854 161 GKTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTH--RELFPLPG-GGLLIDTPGFREFGLLHIDPEELA 237 (287)
T ss_pred CCEEEEECCCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEEE--EEEEECCC-CCEEEECCCCCCCCCCCCCHHHHH
T ss_conf 988999889988889999874621212566667760898501415--79999289-958986898763567778989998
Q ss_pred HHHHHHHH
Q ss_conf 88998503
Q gi|254780809|r 291 RTFLEVEN 298 (440)
Q Consensus 291 ra~~~i~~ 298 (440)
T Consensus 238 ~~F~ei~~ 245 (287)
T cd01854 238 HYFPEFRE 245 (287)
T ss_pred HHCHHHHH
T ss_conf 86878999