HHsearch alignment for GI: 254780809 and conserved domain: cd01857
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.59 E-value=7.6e-16 Score=129.76 Aligned_cols=57 Identities=37% Similarity=0.503 Sum_probs=49.3
Q ss_pred HCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHH
Q ss_conf 023024311466318889999855200023454687211000124568358999508100
Q gi|254780809|r 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 (440)
Q Consensus 218 ~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGi 277 (440)
T Consensus 82 ~~~~i~ivG~PNVGKSSlIN~L~g~k~~~v~~~PG~Tr~~~~i~--~~-~~i~liDTPGi 138 (141)
T cd01857 82 ENATIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIF--LT-PTITLCDCPGL 138 (141)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCCCCEEEEE--EC-CCEEEEECCCC
T ss_conf 76268997788866999999985886687659994157668999--68-99999989886