HHsearch alignment for GI: 254780809 and conserved domain: cd01857
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=96.51 E-value=0.0013 Score=44.89 Aligned_cols=45 Identities=16% Similarity=0.276 Sum_probs=33.7
Q ss_pred HHHHHHHHHCCEEECCCCCCHH-----HHH-----HHCCCCCCCCCCCCCCCCCC
Q ss_conf 8899850301102013589856-----634-----31289853222233344654
Q gi|254780809|r 291 RTFLEVENADLILLLKEINSKK-----EIS-----FPKNIDFIFIGTKSDLYSTY 335 (440)
Q Consensus 291 ra~~~i~~aDlil~v~D~~~~~-----~~~-----~~~~~~~i~V~NK~Dl~~~~ 335 (440)
T Consensus 4 q~~~~ie~aDvVleV~DaR~p~~s~~~~l~~~l~~~~~~Kp~ilVlNK~DL~~~~ 58 (141)
T cd01857 4 QLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTEE 58 (141)
T ss_pred HHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCHH
T ss_conf 9999997699999999898888768999999999843899579998650049999