HHsearch alignment for GI: 254780809 and conserved domain: cd01859
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.04 E-value=4.7e-06 Score=61.82 Aligned_cols=75 Identities=13% Similarity=0.109 Sum_probs=55.3
Q ss_pred HHHHHHHHHCCEEECCCCCCHH-----HH---HHHCCCCCCCCCCCCCCCCCCCH-----------HHHHHHHHHHHHHH
Q ss_conf 8899850301102013589856-----63---43128985322223334465420-----------00001333323235
Q gi|254780809|r 291 RTFLEVENADLILLLKEINSKK-----EI---SFPKNIDFIFIGTKSDLYSTYTE-----------EYDHLISSFTGEGL 351 (440)
Q Consensus 291 ra~~~i~~aDlil~v~D~~~~~-----~~---~~~~~~~~i~V~NK~Dl~~~~~~-----------~~~~~ISaktg~Gi 351 (440)
T Consensus 5 ~i~~~i~~~D~il~VvDar~p~~~~~~~l~~~l~~~~K~~ilvlNK~Dl~~~~~~~~~~~~~~~~g~~~i~iSa~~~~g~ 84 (156)
T cd01859 5 LVRRIIKESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLVPKEVLEKWKSIKESEGIPVVYVSAKERLGT 84 (156)
T ss_pred HHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCH
T ss_conf 99999987999999998788999869899999975699399997755558989999999998289997378701267579
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 89999999996322
Q gi|254780809|r 352 EELINKIKSILSNK 365 (440)
Q Consensus 352 ~~L~~~I~~~l~~~ 365 (440)
T Consensus 85 ~~L~~~i~~~~~~~ 98 (156)
T cd01859 85 KILRRTIKELAKID 98 (156)
T ss_pred HHHHHHHHHHHCCC
T ss_conf 99999999860235