HHsearch alignment for GI: 254780809 and conserved domain: cd01870
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.33 E-value=7.1e-12 Score=102.21 Aligned_cols=133 Identities=25% Similarity=0.321 Sum_probs=90.6
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEE--EEEEECCHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 3024311466318889999855200023454687211000124568358--99950810002410356666788899850
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL--VKISDTAGIRETDDIVEKEGIKRTFLEVE 297 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~--~~l~DTaGir~t~d~IE~~GI~ra~~~i~ 297 (440)
T Consensus 2 ~Ki~liGd~~VGKTsli~r~~~~~F--~~~y~pTi~~~~~~~i~~~~~~v~l~iwDtaG~e~~~~--------~~~~~~~ 71 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQF--PEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDR--------LRPLSYP 71 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC--CCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCCCCCC--------CHHHHHC
T ss_conf 0999999899669999999970989--99847843689999999999999999997776613232--------4044314
Q ss_pred HHCCEEECCCCCCHHHHHH------------HCCCCCCCCCCCCCCCCCCC---------H-------------H----H
Q ss_conf 3011020135898566343------------12898532222333446542---------0-------------0----0
Q gi|254780809|r 298 NADLILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYSTYT---------E-------------E----Y 339 (440)
Q Consensus 298 ~aDlil~v~D~~~~~~~~~------------~~~~~~i~V~NK~Dl~~~~~---------~-------------~----~ 339 (440)
T Consensus 72 ~a~~~ilvydi~~~~Sf~~~~~~w~~~i~~~~~~~piilVgnK~DL~~~~~~~~~~~~~~~~~V~~~eg~~~a~~~~~~~ 151 (175)
T cd01870 72 DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFG 151 (175)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCE
T ss_conf 88789999865987999999999999999729899899998724334332345666540255668999999999749978
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 00133332323589999999996
Q gi|254780809|r 340 DHLISSFTGEGLEELINKIKSIL 362 (440)
Q Consensus 340 ~~~ISaktg~Gi~~L~~~I~~~l 362 (440)
T Consensus 152 f~EtSAk~~~nV~e~Fe~~~k~~ 174 (175)
T cd01870 152 YMECSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred EEEECCCCCCCHHHHHHHHHHHH
T ss_conf 99976899979899999999986