HHsearch alignment for GI: 254780809 and conserved domain: cd01870

>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.33  E-value=7.1e-12  Score=102.21  Aligned_cols=133  Identities=25%  Similarity=0.321  Sum_probs=90.6

Q ss_pred             CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEE--EEEEECCHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf             3024311466318889999855200023454687211000124568358--99950810002410356666788899850
Q gi|254780809|r  220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL--VKISDTAGIRETDDIVEKEGIKRTFLEVE  297 (440)
Q Consensus       220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~--~~l~DTaGir~t~d~IE~~GI~ra~~~i~  297 (440)
T Consensus         2 ~Ki~liGd~~VGKTsli~r~~~~~F--~~~y~pTi~~~~~~~i~~~~~~v~l~iwDtaG~e~~~~--------~~~~~~~   71 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQF--PEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDR--------LRPLSYP   71 (175)
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCC--CCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCCCCCC--------CHHHHHC
T ss_conf             0999999899669999999970989--99847843689999999999999999997776613232--------4044314


Q ss_pred             HHCCEEECCCCCCHHHHHH------------HCCCCCCCCCCCCCCCCCCC---------H-------------H----H
Q ss_conf             3011020135898566343------------12898532222333446542---------0-------------0----0
Q gi|254780809|r  298 NADLILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYSTYT---------E-------------E----Y  339 (440)
Q Consensus       298 ~aDlil~v~D~~~~~~~~~------------~~~~~~i~V~NK~Dl~~~~~---------~-------------~----~  339 (440)
T Consensus        72 ~a~~~ilvydi~~~~Sf~~~~~~w~~~i~~~~~~~piilVgnK~DL~~~~~~~~~~~~~~~~~V~~~eg~~~a~~~~~~~  151 (175)
T cd01870          72 DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFG  151 (175)
T ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCE
T ss_conf             88789999865987999999999999999729899899998724334332345666540255668999999999749978


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             00133332323589999999996
Q gi|254780809|r  340 DHLISSFTGEGLEELINKIKSIL  362 (440)
Q Consensus       340 ~~~ISaktg~Gi~~L~~~I~~~l  362 (440)
T Consensus       152 f~EtSAk~~~nV~e~Fe~~~k~~  174 (175)
T cd01870         152 YMECSAKTKEGVREVFEMATRAA  174 (175)
T ss_pred             EEEECCCCCCCHHHHHHHHHHHH
T ss_conf             99976899979899999999986