HHsearch alignment for GI: 254780809 and conserved domain: cd01876
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.94 E-value=3.4e-27 Score=208.48 Aligned_cols=139 Identities=27% Similarity=0.293 Sum_probs=103.4
Q ss_pred CEEEECCCCCCHHHHHHHHHCCHH-CCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCC-----CCHHHHHHHHHHHHH
Q ss_conf 024311466318889999855200-02345468721100012456835899950810002-----410356666788899
Q gi|254780809|r 221 KIVILGHSNAGKSSLFNALAKKDV-AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-----TDDIVEKEGIKRTFL 294 (440)
Q Consensus 221 ~v~i~G~pN~GKSSL~N~L~~~~~-aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~-----t~d~IE~~GI~ra~~ 294 (440)
T Consensus 1 eIaivG~pN~GKSTL~N~L~~~~~~~~vs~~~gtTr~i~~~--~~-~~~~~~vDtPG~g~~~~~~~~~~~~~~~~~~~l~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFF--NV-NDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCEEEEEEEE--EE-CCEEEEEECCCCHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 98999899999999999996899627860789778520588--53-8779999657840101687799999999999998
Q ss_pred HHHHHCCEEECCCCCCH---HHHH-----HHCCCCCCCCCCCCCCCCCCCH-----------------HHHHHHHHHHHH
Q ss_conf 85030110201358985---6634-----3128985322223334465420-----------------000013333232
Q gi|254780809|r 295 EVENADLILLLKEINSK---KEIS-----FPKNIDFIFIGTKSDLYSTYTE-----------------EYDHLISSFTGE 349 (440)
Q Consensus 295 ~i~~aDlil~v~D~~~~---~~~~-----~~~~~~~i~V~NK~Dl~~~~~~-----------------~~~~~ISaktg~ 349 (440)
T Consensus 78 ~~~~~~~vi~viD~~~~~~~~d~~i~~~l~~~~kp~iiVlNKiDlv~~~~~~~~~~~~~~~l~~~~~~~~ii~iSA~~g~ 157 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQ 157 (170)
T ss_pred HHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCC
T ss_conf 40633499999963223748689999999876998799998675378778999999999987421799839999889997
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 3589999999996
Q gi|254780809|r 350 GLEELINKIKSIL 362 (440)
Q Consensus 350 Gi~~L~~~I~~~l 362 (440)
T Consensus 158 gi~~L~~~I~~~L 170 (170)
T cd01876 158 GIDELRALIEKWL 170 (170)
T ss_pred CHHHHHHHHHHHC
T ss_conf 7999999999859