HHsearch alignment for GI: 254780809 and conserved domain: cd01884
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.99 E-value=1.5e-09 Score=86.11 Aligned_cols=106 Identities=16% Similarity=0.199 Sum_probs=68.1
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHH-----------CCCC----CCCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHH
Q ss_conf 3024311466318889999855200-----------0234----546872110001245683589995081000241035
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDV-----------AIVT----DIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV 284 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~-----------aIVs----~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~I 284 (440)
T Consensus 3 ~Ni~iiGHVDhGKTTL~~~l~~~~~~~~~~~~~~~~~~D~~~~EreRGiTI~~~~~~~~~~~~~~~~IDtPGH~dF~--- 79 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYI--- 79 (195)
T ss_pred EEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCHHCCCCHHHHCCCCCCCCEEEEEECCCEEEEECCCCCHHHHH---
T ss_conf 79999960588698999999998866344441120010054666505886144189996088169962689607788---
Q ss_pred HHHHHHHHHHHHHHHCCEEECCCCCCHHH--------HHHHCCCC-CCCCCCCCCCCC
Q ss_conf 66667888998503011020135898566--------34312898-532222333446
Q gi|254780809|r 285 EKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNID-FIFIGTKSDLYS 333 (440)
Q Consensus 285 E~~GI~ra~~~i~~aDlil~v~D~~~~~~--------~~~~~~~~-~i~V~NK~Dl~~ 333 (440)
T Consensus 80 -----~~~i~g~~~~D~aiLVVdA~eGv~~QT~eh~~la~~lgi~~iiV~iNK~D~~~ 132 (195)
T cd01884 80 -----KNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVD 132 (195)
T ss_pred -----HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf -----89986351136268998527787478999999999809996279996877898