HHsearch alignment for GI: 254780809 and conserved domain: cd01888
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.14 E-value=2e-10 Score=92.13 Aligned_cols=137 Identities=20% Similarity=0.126 Sum_probs=84.9
Q ss_pred CCEEEECCCCCCHHHHHHHHHCC---------HHCCCCCC------------CCCCEEECCC--------CCCCC-----
Q ss_conf 30243114663188899998552---------00023454------------6872110001--------24568-----
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKK---------DVAIVTDI------------PGTTRDVLTI--------DLDLE----- 265 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~---------~~aIVs~~------------~GTTRD~i~~--------~~~i~----- 265 (440)
T Consensus 1 vNi~iiGHVDhGKSTLi~~L~g~~~~~~~~e~er~it~klg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEEEEECCCHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCEEEECCCCCCCC
T ss_conf 96999988578799999997085124407888677603111456666511121223101111012442145314565431
Q ss_pred -CEEEEEEECCHHCCCCHHHHHHHHHHHHHHHHHHCCEEECCCCCCHH-H---H-----HHHCC-CCCCCCCCCCCCCCC
Q ss_conf -35899950810002410356666788899850301102013589856-6---3-----43128-985322223334465
Q gi|254780809|r 266 -GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK-E---I-----SFPKN-IDFIFIGTKSDLYST 334 (440)
Q Consensus 266 -g~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~aDlil~v~D~~~~~-~---~-----~~~~~-~~~i~V~NK~Dl~~~ 334 (440)
T Consensus 81 ~~r~~tiiD~PGH~df--------~~nmi~Gas~aD~aiLvVdA~eG~~~~QT~eH~~l~~~lgv~~iIV~vNKmDlv~~ 152 (203)
T cd01888 81 LVRHVSFVDCPGHEIL--------MATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVKE 152 (203)
T ss_pred CEEEEEEEECCCHHHH--------HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCH
T ss_conf 1247999868987999--------99999766434766898643667750779999999998499863677507777886
Q ss_pred CCH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 420------------------000013333232358999999999632
Q gi|254780809|r 335 YTE------------------EYDHLISSFTGEGLEELINKIKSILSN 364 (440)
Q Consensus 335 ~~~------------------~~~~~ISaktg~Gi~~L~~~I~~~l~~ 364 (440)
T Consensus 153 ~~~~~~~~ei~~~l~~~~~~~~~iIPiSA~~G~NI~~ll~~i~~~ip~ 200 (203)
T cd01888 153 EQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 789999999999855216899859991478897999999999867829