HHsearch alignment for GI: 254780809 and conserved domain: cd01892
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.49 E-value=1.5e-13 Score=113.84 Aligned_cols=139 Identities=20% Similarity=0.259 Sum_probs=100.2
Q ss_pred HHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEE--EEEEECCHHCCCCHHHHHHHHHHHHH
Q ss_conf 2023024311466318889999855200023454687211000124568358--99950810002410356666788899
Q gi|254780809|r 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL--VKISDTAGIRETDDIVEKEGIKRTFL 294 (440)
Q Consensus 217 ~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~--~~l~DTaGir~t~d~IE~~GI~ra~~ 294 (440)
T Consensus 2 r~vfk~~VlG~~~VGKTsLi~rf~~~~f~~~~y~~Ti~~~~~~k~v~v~g~~~~L~i~Dt~g~e~~--------~~l~~~ 73 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVA--------ILLNDA 73 (169)
T ss_pred CEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEECCCCHHH--------HHHHHH
T ss_conf 508999999999988999999996499986665675466189999998999999999855653235--------566588
Q ss_pred HHHHHCCEEECCCCCCHHHHHH----------HCCCCCCCCCCCCCCCCCCCHH--------------HHHHHHHHHHHH
Q ss_conf 8503011020135898566343----------1289853222233344654200--------------000133332323
Q gi|254780809|r 295 EVENADLILLLKEINSKKEISF----------PKNIDFIFIGTKSDLYSTYTEE--------------YDHLISSFTGEG 350 (440)
Q Consensus 295 ~i~~aDlil~v~D~~~~~~~~~----------~~~~~~i~V~NK~Dl~~~~~~~--------------~~~~ISaktg~G 350 (440)
T Consensus 74 ~~~~ad~~ilVyDit~~~SF~~i~~~~~~~~~~~~iP~vlVgNK~DL~~~rqV~~~e~~~~a~~~~~~~~~e~SAktg~n 153 (169)
T cd01892 74 ELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDS 153 (169)
T ss_pred HHCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCC
T ss_conf 75469889999979987899999999997005689818999886554203754677699999983999666998327989
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 5899999999963
Q gi|254780809|r 351 LEELINKIKSILS 363 (440)
Q Consensus 351 i~~L~~~I~~~l~ 363 (440)
T Consensus 154 v~~~F~~la~~a~ 166 (169)
T cd01892 154 SNELFTKLATAAQ 166 (169)
T ss_pred HHHHHHHHHHHHH
T ss_conf 8999999999976