HHsearch alignment for GI: 254780809 and conserved domain: cd01895
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.98 E-value=1.7e-32 Score=245.31 Aligned_cols=145 Identities=32% Similarity=0.547 Sum_probs=123.8
Q ss_pred HCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCC---CCHHHHHHHHHHHHH
Q ss_conf 02302431146631888999985520002345468721100012456835899950810002---410356666788899
Q gi|254780809|r 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE---TDDIVEKEGIKRTFL 294 (440)
Q Consensus 218 ~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~---t~d~IE~~GI~ra~~ 294 (440)
T Consensus 1 ~~~~V~ivG~pN~GKSTL~N~l~g~~~~~vs~~pgtTr~~~~~~~~~~~~~~~~vDtpGi~~~~~~~~~~e~~~~~~~~~ 80 (174)
T cd01895 1 DPIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLK 80 (174)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCEEECCEEEEEECCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 99899999899998999999983898444349999157332899999998899985788421344210688999999999
Q ss_pred HHHHHCCEEECCCCCCH---HHHH-----HHCCCCCCCCCCCCCCCCCCCHH------------------HHHHHHHHHH
Q ss_conf 85030110201358985---6634-----31289853222233344654200------------------0001333323
Q gi|254780809|r 295 EVENADLILLLKEINSK---KEIS-----FPKNIDFIFIGTKSDLYSTYTEE------------------YDHLISSFTG 348 (440)
Q Consensus 295 ~i~~aDlil~v~D~~~~---~~~~-----~~~~~~~i~V~NK~Dl~~~~~~~------------------~~~~ISaktg 348 (440)
T Consensus 81 ~i~~~dvil~viDa~~~~~~~d~~i~~~l~~~~~p~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~ii~iSA~~g 160 (174)
T cd01895 81 AIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISALTG 160 (174)
T ss_pred HHHHCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECEECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCC
T ss_conf 99842865899758989988999999999985998699985675267647789999999998734168992899974479
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 23589999999996
Q gi|254780809|r 349 EGLEELINKIKSIL 362 (440)
Q Consensus 349 ~Gi~~L~~~I~~~l 362 (440)
T Consensus 161 ~Gi~~L~~~I~ei~ 174 (174)
T cd01895 161 QGVDKLFDAIDEVY 174 (174)
T ss_pred CCHHHHHHHHHHHC
T ss_conf 89999999999869