HHsearch alignment for GI: 254780809 and conserved domain: cd01898
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.95 E-value=1.7e-28 Score=217.61 Aligned_cols=140 Identities=26% Similarity=0.331 Sum_probs=108.8
Q ss_pred CEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCC-CCEEEEEEECCHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 02431146631888999985520002345468721100012456-83589995081000241035666678889985030
Q gi|254780809|r 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 (440)
Q Consensus 221 ~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i-~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~a 299 (440)
T Consensus 2 ~VAiiG~pNvGKSTLlN~l~~~~~~-V~~~pgTT~~~~~g~i~~~~~~~i~~~DtpGi~~~~~~~~~l~-~~~l~~i~~a 79 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPK-IADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLG-HRFLRHIERT 79 (170)
T ss_pred CEEEECCCCCCHHHHHHHHHCCCCE-EECCCCCCCCCEEEEEEECCCCEEEEECCCCCCCCCCCCCCHH-HHHHHCCCCC
T ss_conf 5899899999899999999678760-3256665237447799936985699964886444554662248-9998613345
Q ss_pred CCEEECCCCCCHHH----HHH-----------HCCCCCCCCCCCCCCCCCCCH-------------HHHHHHHHHHHHHH
Q ss_conf 11020135898566----343-----------128985322223334465420-------------00001333323235
Q gi|254780809|r 300 DLILLLKEINSKKE----ISF-----------PKNIDFIFIGTKSDLYSTYTE-------------EYDHLISSFTGEGL 351 (440)
Q Consensus 300 Dlil~v~D~~~~~~----~~~-----------~~~~~~i~V~NK~Dl~~~~~~-------------~~~~~ISaktg~Gi 351 (440)
T Consensus 80 dvil~vvD~~~~~~~~~~~~~i~~~l~~~~~~~~~kp~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~vi~iSA~~g~gi 159 (170)
T cd01898 80 RLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPVFPISALTGEGL 159 (170)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHHCHHHHCCCCEEEEEHHHCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCH
T ss_conf 61799998998789899999999999982744403865067762024283563899999998569995899975479799
Q ss_pred HHHHHHHHHHH
Q ss_conf 89999999996
Q gi|254780809|r 352 EELINKIKSIL 362 (440)
Q Consensus 352 ~~L~~~I~~~l 362 (440)
T Consensus 160 ~~L~~~I~~~L 170 (170)
T cd01898 160 DELLRKLAELL 170 (170)
T ss_pred HHHHHHHHHHC
T ss_conf 99999999669