>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

Probab=95.44  E-value=0.044  Score=34.25  Aligned_cols=30  Identities=27%  Similarity=0.484  Sum_probs=26.3

Q ss_pred             HHHHCCCEEEECCCCCCHHHHHHHHHCCHH
Q ss_conf             432023024311466318889999855200
Q gi|254780809|r  215 IIRNGYKIVILGHSNAGKSSLFNALAKKDV  244 (440)
Q Consensus       215 ~l~~g~~v~i~G~pN~GKSSL~N~L~~~~~  244 (440)
T Consensus        21 ~v~~GEiv~ilGpNGaGKSTllk~i~G~l~   50 (177)
T cd03222          21 VVKEGEVIGIVGPNGTGKTTAVKILAGQLI   50 (177)
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf             558998999989999999999999968867