HHsearch alignment for GI: 254780809 and conserved domain: cd03225
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=93.92 E-value=0.047 Score=34.03 Aligned_cols=42 Identities=24% Similarity=0.339 Sum_probs=32.1
Q ss_pred HHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEE
Q ss_conf 320230243114663188899998552000234546872110001245683589
Q gi|254780809|r 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269 (440)
Q Consensus 216 l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~ 269 (440)
T Consensus 24 i~~Gei~~iiG~nGaGKSTLlk~i~Gl~~p----~--------~G~I~~~g~~i 65 (211)
T cd03225 24 IKKGEFVLIVGPNGSGKSTLLRLLNGLLGP----T--------SGEVLVDGKDL 65 (211)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCCC----C--------CCCEEECCEEC
T ss_conf 849979999889999899999999646779----8--------88778999999