HHsearch alignment for GI: 254780809 and conserved domain: cd03248
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=96.50 E-value=0.0044 Score=41.18 Aligned_cols=125 Identities=10% Similarity=0.120 Sum_probs=67.7
Q ss_pred HHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHHH
Q ss_conf 32023024311466318889999855200023454687211000124568358999508100024103566667888998
Q gi|254780809|r 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 (440)
Q Consensus 216 l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~ 295 (440)
T Consensus 37 i~~Ge~vaIvG~sGsGKSTL~~ll~gl~~----p--------~~G~I~idg~~i~~~~~~~lr~---------------- 88 (226)
T cd03248 37 LHPGEVTALVGPSGSGKSTVVALLENFYQ----P--------QGGQVLLDGKPISQYEHKYLHS---------------- 88 (226)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCCC----C--------CCCEEEECCEEHHHCCHHHHHH----------------
T ss_conf 82999999999999849999999964546----7--------8878999999934489999973----------------
Q ss_pred HHHHCCEEEC------CCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 5030110201------3589856634312898532222333446542000001333323235899999999963220358
Q gi|254780809|r 296 VENADLILLL------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369 (440)
Q Consensus 296 i~~aDlil~v------~D~~~~~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~ISaktg~Gi~~L~~~I~~~l~~~~~~~ 369 (440)
T Consensus 89 -----~i~~v~Q~~~lf~~ti~eNi~~--------g~------~~--~~~~~i~~~~~~~~~~~~i~~l~~gl~t~i~~~ 147 (226)
T cd03248 89 -----KVSLVGQEPVLFARSLQDNIAY--------GL------QS--CSFECVKEAAQKAHAHSFISELASGYDTEVGEK 147 (226)
T ss_pred -----CEEEEECCCEECCCCHHHHHHC--------CC------CC--CCHHHHHHHHHHHCHHHHHHHCCCCCCCEECCC
T ss_conf -----2699924795767735666632--------78------99--999999999999661467762636664061684
Q ss_pred CCCEEHHHHHHHHHHHHHHH
Q ss_conf 86320148999999999999
Q gi|254780809|r 370 PFSIPSHKRHLYHLSQTVRY 389 (440)
Q Consensus 370 ~~~i~~~~Rq~~~L~~a~~~ 389 (440)
T Consensus 148 g~~LSgGqkQRialARal~~ 167 (226)
T cd03248 148 GSQLSGGQKQRVAIARALIR 167 (226)
T ss_pred CCCCCHHHHHHHHHHHHHHC
T ss_conf 88769999999999999975