HHsearch alignment for GI: 254780809 and conserved domain: cd03249
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=96.99 E-value=0.00082 Score=46.24 Aligned_cols=51 Identities=22% Similarity=0.302 Sum_probs=37.9
Q ss_pred HHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHC
Q ss_conf 320230243114663188899998552000234546872110001245683589995081000
Q gi|254780809|r 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 (440)
Q Consensus 216 l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir 278 (440)
T Consensus 26 i~~G~~iaIvG~sGsGKSTLl~ll~gl~~----p~--------~G~I~idg~~i~~~~~~~~r 76 (238)
T cd03249 26 IPPGKTVALVGSSGCGKSTVVSLLERFYD----PT--------SGEILLDGVDIRDLNLRWLR 76 (238)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHHCCC----CC--------CCEEEECCEECCCCCHHHHH
T ss_conf 76999999999999989999999823861----88--------51899999992318999997