HHsearch alignment for GI: 254780809 and conserved domain: cd03252
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=96.40 E-value=0.0049 Score=40.82 Aligned_cols=51 Identities=27% Similarity=0.348 Sum_probs=36.8
Q ss_pred HHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHC
Q ss_conf 320230243114663188899998552000234546872110001245683589995081000
Q gi|254780809|r 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 (440)
Q Consensus 216 l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir 278 (440)
T Consensus 25 i~~G~~vaivG~sGsGKSTll~ll~gl~~----p~--------~G~I~i~g~di~~~~~~~~r 75 (237)
T cd03252 25 IKPGEVVGIVGRSGSGKSTLTKLIQRFYV----PE--------NGRVLVDGHDLALADPAWLR 75 (237)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCCC----CC--------CCEEEECCEECCCCCHHHHH
T ss_conf 87999999999999859999999967765----79--------87899999995518999998