HHsearch alignment for GI: 254780809 and conserved domain: cd03256
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.20 E-value=0.037 Score=34.79 Aligned_cols=42 Identities=26% Similarity=0.342 Sum_probs=32.8
Q ss_pred HHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEE
Q ss_conf 320230243114663188899998552000234546872110001245683589
Q gi|254780809|r 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269 (440)
Q Consensus 216 l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~ 269 (440)
T Consensus 24 i~~Ge~~~iiGpsGsGKSTLl~~i~gl~~p------------~~G~I~~~g~~i 65 (241)
T cd03256 24 INPGEFVALIGPSGAGKSTLLRCLNGLVEP------------TSGSVLIDGTDI 65 (241)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCCCC------------CCEEEEECCEEC
T ss_conf 999989999999983399999999749999------------855999999998