HHsearch alignment for GI: 254780809 and conserved domain: cd04102
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=98.84 E-value=2.9e-08 Score=77.10 Aligned_cols=109 Identities=22% Similarity=0.338 Sum_probs=69.3
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHC-CCCCCCCCCEEECCCCC-----CCCCEEEEEEECCHHCCCCHHHHHHHHHHHH
Q ss_conf 30243114663188899998552000-23454687211000124-----5683589995081000241035666678889
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVA-IVTDIPGTTRDVLTIDL-----DLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~a-IVs~~~GTTRD~i~~~~-----~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~ 293 (440)
T Consensus 1 vKIlllGDsgVGKTSL~~~~~~~~f~~~~~~TiG~~v~~k~~~~~~~~~~~k~~~l~lWDtaGqery~--------sl~~ 72 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVK--------STRA 72 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCEEEEEEEECCCCHHHH--------HHHH
T ss_conf 98999999998999999999839888888885036789999993378767838999999899877577--------6789
Q ss_pred HHHHHHCCEEECCCCCCHHHHH-------HH------------------------CCCCCCCCCCCCCCCCCCC
Q ss_conf 9850301102013589856634-------31------------------------2898532222333446542
Q gi|254780809|r 294 LEVENADLILLLKEINSKKEIS-------FP------------------------KNIDFIFIGTKSDLYSTYT 336 (440)
Q Consensus 294 ~~i~~aDlil~v~D~~~~~~~~-------~~------------------------~~~~~i~V~NK~Dl~~~~~ 336 (440)
T Consensus 73 ~yYr~a~gvILVyDvTnr~SF~nL~~Wl~Eil~~~~~~~~~~~~~~~~~~~~~~~~~vPilvVGtK~D~~~~r~ 146 (202)
T cd04102 73 VFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKE 146 (202)
T ss_pred HHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECHHHCCCCC
T ss_conf 97588989999998949899986999999997536766654556665553334678975899976065243435