HHsearch alignment for GI: 254780809 and conserved domain: cd04106
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.36 E-value=3.2e-12 Score=104.55 Aligned_cols=132 Identities=22% Similarity=0.207 Sum_probs=90.4
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCC-EEECCCCCC--CCCE--EEEEEECCHHCCCCHHHHHHHHHHHHH
Q ss_conf 30243114663188899998552000234546872-110001245--6835--899950810002410356666788899
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT-RDVLTIDLD--LEGY--LVKISDTAGIRETDDIVEKEGIKRTFL 294 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTT-RD~i~~~~~--i~g~--~~~l~DTaGir~t~d~IE~~GI~ra~~ 294 (440)
T Consensus 1 iKivvlGd~~VGKTsLi~r~~~~~f--~~~y~~Tig~~~~~k~i~~~~~~~~v~l~iwDtaG~e~~~~--------l~~~ 70 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIF--TKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDA--------ITKA 70 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCCEEEEEEEEECCCCEEEEEEEEECCCCCCCCC--------CHHH
T ss_conf 9899999999889999999984968--98768855625788789986799799999997899701341--------5245
Q ss_pred HHHHHCCEEECCCCCCHHHHHH-----------HCCCCCCCCCCCCCCCCCCCHH-------------HHHHHHHHHHHH
Q ss_conf 8503011020135898566343-----------1289853222233344654200-------------000133332323
Q gi|254780809|r 295 EVENADLILLLKEINSKKEISF-----------PKNIDFIFIGTKSDLYSTYTEE-------------YDHLISSFTGEG 350 (440)
Q Consensus 295 ~i~~aDlil~v~D~~~~~~~~~-----------~~~~~~i~V~NK~Dl~~~~~~~-------------~~~~ISaktg~G 350 (440)
T Consensus 71 ~~~~a~~~ilvydvt~~~Sf~~l~~w~~~~~~~~~~~piilVgNK~DL~~~r~V~~~e~~~~a~~~~~~~~E~SAk~~~n 150 (162)
T cd04106 71 YYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFN 150 (162)
T ss_pred HHHHHCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCHHHHHHHHHHCCCEEEEECCCCCCC
T ss_conf 61230312688406988999999999999997669962999840544410177899999999998698799986888829
Q ss_pred HHHHHHHHHHH
Q ss_conf 58999999999
Q gi|254780809|r 351 LEELINKIKSI 361 (440)
Q Consensus 351 i~~L~~~I~~~ 361 (440)
T Consensus 151 V~e~F~~la~k 161 (162)
T cd04106 151 VTELFEYLAEK 161 (162)
T ss_pred HHHHHHHHHHH
T ss_conf 89999999960