HHsearch alignment for GI: 254780809 and conserved domain: cd04110

>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.41  E-value=1e-12  Score=108.07  Aligned_cols=136  Identities=20%  Similarity=0.227  Sum_probs=95.4

Q ss_pred             CCCEEEECCCCCCHHHHHHHHHCCHHCCCCCC-CCCCEEECCCCCCCCC--EEEEEEECCHHCCCCHHHHHHHHHHHHHH
Q ss_conf             23024311466318889999855200023454-6872110001245683--58999508100024103566667888998
Q gi|254780809|r  219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDI-PGTTRDVLTIDLDLEG--YLVKISDTAGIRETDDIVEKEGIKRTFLE  295 (440)
Q Consensus       219 g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~-~GTTRD~i~~~~~i~g--~~~~l~DTaGir~t~d~IE~~GI~ra~~~  295 (440)
T Consensus         6 ~~KIvlvGd~~VGKTSli~r~~~~~F--~~~~~~Tig~d~~~k~v~i~~~~v~l~iwDtaGqe~~~~--------l~~~~   75 (199)
T cd04110           6 LFKLLIIGDSGVGKSSLLLRFADNTF--SGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRT--------ITSTY   75 (199)
T ss_pred             EEEEEEECCCCCCHHHHHHHHHCCCC--CCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCCCCCC--------CHHHH
T ss_conf             77999999799888999999950999--998689755587899999999999999998999812353--------52666


Q ss_pred             HHHHCCEEECCCCCCHHHHHH-----------HCCCCCCCCCCCCCCCCCCCHH-------------HHHHHHHHHHHHH
Q ss_conf             503011020135898566343-----------1289853222233344654200-------------0001333323235
Q gi|254780809|r  296 VENADLILLLKEINSKKEISF-----------PKNIDFIFIGTKSDLYSTYTEE-------------YDHLISSFTGEGL  351 (440)
Q Consensus       296 i~~aDlil~v~D~~~~~~~~~-----------~~~~~~i~V~NK~Dl~~~~~~~-------------~~~~ISaktg~Gi  351 (440)
T Consensus        76 ~~~a~~~ilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~ilVGNK~Dl~~~r~v~~~e~~~~a~~~~~~f~E~SAktg~nV  155 (199)
T cd04110          76 YRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINV  155 (199)
T ss_pred             HHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHCCCCHHHHHHHHHHCCCEEEEEECCCCCCH
T ss_conf             42465423897179889999999999999975998757999885544754699999999999986997999868999298


Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             8999999999632
Q gi|254780809|r  352 EELINKIKSILSN  364 (440)
Q Consensus       352 ~~L~~~I~~~l~~  364 (440)
T Consensus       156 ~e~F~~i~~~i~~  168 (199)
T cd04110         156 EEMFNCITELVLR  168 (199)
T ss_pred             HHHHHHHHHHHHH
T ss_conf             9999999999999