HHsearch alignment for GI: 254780809 and conserved domain: cd04110
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.41 E-value=1e-12 Score=108.07 Aligned_cols=136 Identities=20% Similarity=0.227 Sum_probs=95.4
Q ss_pred CCCEEEECCCCCCHHHHHHHHHCCHHCCCCCC-CCCCEEECCCCCCCCC--EEEEEEECCHHCCCCHHHHHHHHHHHHHH
Q ss_conf 23024311466318889999855200023454-6872110001245683--58999508100024103566667888998
Q gi|254780809|r 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDI-PGTTRDVLTIDLDLEG--YLVKISDTAGIRETDDIVEKEGIKRTFLE 295 (440)
Q Consensus 219 g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~-~GTTRD~i~~~~~i~g--~~~~l~DTaGir~t~d~IE~~GI~ra~~~ 295 (440)
T Consensus 6 ~~KIvlvGd~~VGKTSli~r~~~~~F--~~~~~~Tig~d~~~k~v~i~~~~v~l~iwDtaGqe~~~~--------l~~~~ 75 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTF--SGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRT--------ITSTY 75 (199)
T ss_pred EEEEEEECCCCCCHHHHHHHHHCCCC--CCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCCCCCC--------CHHHH
T ss_conf 77999999799888999999950999--998689755587899999999999999998999812353--------52666
Q ss_pred HHHHCCEEECCCCCCHHHHHH-----------HCCCCCCCCCCCCCCCCCCCHH-------------HHHHHHHHHHHHH
Q ss_conf 503011020135898566343-----------1289853222233344654200-------------0001333323235
Q gi|254780809|r 296 VENADLILLLKEINSKKEISF-----------PKNIDFIFIGTKSDLYSTYTEE-------------YDHLISSFTGEGL 351 (440)
Q Consensus 296 i~~aDlil~v~D~~~~~~~~~-----------~~~~~~i~V~NK~Dl~~~~~~~-------------~~~~ISaktg~Gi 351 (440)
T Consensus 76 ~~~a~~~ilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~ilVGNK~Dl~~~r~v~~~e~~~~a~~~~~~f~E~SAktg~nV 155 (199)
T cd04110 76 YRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINV 155 (199)
T ss_pred HHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHCCCCHHHHHHHHHHCCCEEEEEECCCCCCH
T ss_conf 42465423897179889999999999999975998757999885544754699999999999986997999868999298
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 8999999999632
Q gi|254780809|r 352 EELINKIKSILSN 364 (440)
Q Consensus 352 ~~L~~~I~~~l~~ 364 (440)
T Consensus 156 ~e~F~~i~~~i~~ 168 (199)
T cd04110 156 EEMFNCITELVLR 168 (199)
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999999