HHsearch alignment for GI: 254780809 and conserved domain: cd04125
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.46 E-value=5.1e-13 Score=110.10 Aligned_cols=139 Identities=19% Similarity=0.238 Sum_probs=96.3
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCC-EEECCCCCCCCC--EEEEEEECCHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 30243114663188899998552000234546872-110001245683--589995081000241035666678889985
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT-RDVLTIDLDLEG--YLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTT-RD~i~~~~~i~g--~~~~l~DTaGir~t~d~IE~~GI~ra~~~i 296 (440)
T Consensus 1 ~KivvvGd~~VGKTsli~r~~~~~f--~~~~~~Tig~~~~~k~i~~~~~~~~l~iwDtaG~e~~~--------~l~~~~~ 70 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEF--SESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFR--------SLNNSYY 70 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCHHHH--------HHHHHHH
T ss_conf 9799999999789999999951968--99868865403579999999999999999899971045--------7899986
Q ss_pred HHHCCEEECCCCCCHHHHHH------------HCCCCCCCCCCCCCCCCCCCHH-------------HHHHHHHHHHHHH
Q ss_conf 03011020135898566343------------1289853222233344654200-------------0001333323235
Q gi|254780809|r 297 ENADLILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYSTYTEE-------------YDHLISSFTGEGL 351 (440)
Q Consensus 297 ~~aDlil~v~D~~~~~~~~~------------~~~~~~i~V~NK~Dl~~~~~~~-------------~~~~ISaktg~Gi 351 (440)
T Consensus 71 ~~a~~~ilvydit~~~Sf~~l~~w~~~i~~~~~~~~~iilvgNK~DL~~~r~V~~~e~~~~a~~~~~~~~E~SAktg~nV 150 (188)
T cd04125 71 RGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINV 150 (188)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHCCCCCHHHHHHHHHHCCCEEEEECCCCCCCH
T ss_conf 37867999803898789999999999999878986624510013447660679999999999986998999747889098
Q ss_pred HHHHHHHHHHHHHHCCC
Q ss_conf 89999999996322035
Q gi|254780809|r 352 EELINKIKSILSNKFKK 368 (440)
Q Consensus 352 ~~L~~~I~~~l~~~~~~ 368 (440)
T Consensus 151 ~e~F~~l~~~i~~~~~~ 167 (188)
T cd04125 151 EEAFILLVKLIIKRLEE 167 (188)
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 99999999999998761