HHsearch alignment for GI: 254780809 and conserved domain: cd04125

>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.46  E-value=5.1e-13  Score=110.10  Aligned_cols=139  Identities=19%  Similarity=0.238  Sum_probs=96.3

Q ss_pred             CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCC-EEECCCCCCCCC--EEEEEEECCHHCCCCHHHHHHHHHHHHHHH
Q ss_conf             30243114663188899998552000234546872-110001245683--589995081000241035666678889985
Q gi|254780809|r  220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT-RDVLTIDLDLEG--YLVKISDTAGIRETDDIVEKEGIKRTFLEV  296 (440)
Q Consensus       220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTT-RD~i~~~~~i~g--~~~~l~DTaGir~t~d~IE~~GI~ra~~~i  296 (440)
T Consensus         1 ~KivvvGd~~VGKTsli~r~~~~~f--~~~~~~Tig~~~~~k~i~~~~~~~~l~iwDtaG~e~~~--------~l~~~~~   70 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEF--SESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFR--------SLNNSYY   70 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCHHHH--------HHHHHHH
T ss_conf             9799999999789999999951968--99868865403579999999999999999899971045--------7899986


Q ss_pred             HHHCCEEECCCCCCHHHHHH------------HCCCCCCCCCCCCCCCCCCCHH-------------HHHHHHHHHHHHH
Q ss_conf             03011020135898566343------------1289853222233344654200-------------0001333323235
Q gi|254780809|r  297 ENADLILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYSTYTEE-------------YDHLISSFTGEGL  351 (440)
Q Consensus       297 ~~aDlil~v~D~~~~~~~~~------------~~~~~~i~V~NK~Dl~~~~~~~-------------~~~~ISaktg~Gi  351 (440)
T Consensus        71 ~~a~~~ilvydit~~~Sf~~l~~w~~~i~~~~~~~~~iilvgNK~DL~~~r~V~~~e~~~~a~~~~~~~~E~SAktg~nV  150 (188)
T cd04125          71 RGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINV  150 (188)
T ss_pred             CCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHCCCCCHHHHHHHHHHCCCEEEEECCCCCCCH
T ss_conf             37867999803898789999999999999878986624510013447660679999999999986998999747889098


Q ss_pred             HHHHHHHHHHHHHHCCC
Q ss_conf             89999999996322035
Q gi|254780809|r  352 EELINKIKSILSNKFKK  368 (440)
Q Consensus       352 ~~L~~~I~~~l~~~~~~  368 (440)
T Consensus       151 ~e~F~~l~~~i~~~~~~  167 (188)
T cd04125         151 EEAFILLVKLIIKRLEE  167 (188)
T ss_pred             HHHHHHHHHHHHHHHHH
T ss_conf             99999999999998761