HHsearch alignment for GI: 254780809 and conserved domain: cd04127

>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.41  E-value=1.4e-12  Score=107.14  Aligned_cols=135  Identities=21%  Similarity=0.243  Sum_probs=89.1

Q ss_pred             CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCC-EEECCCCCCC----------CC--EEEEEEECCHHCCCCHHHHH
Q ss_conf             30243114663188899998552000234546872-1100012456----------83--58999508100024103566
Q gi|254780809|r  220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT-RDVLTIDLDL----------EG--YLVKISDTAGIRETDDIVEK  286 (440)
Q Consensus       220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTT-RD~i~~~~~i----------~g--~~~~l~DTaGir~t~d~IE~  286 (440)
T Consensus         5 ~KivvvGd~~VGKTsli~r~~~~~f--~~~y~~Tig~~~~~k~i~~~~~~~~~~~~~~~~v~l~iwDtaGqe~~~-----   77 (180)
T cd04127           5 IKFLALGDSGVGKTSFLYQYTDNKF--NPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFR-----   77 (180)
T ss_pred             EEEEEECCCCCCHHHHHHHHHCCCC--CCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCHHHH-----
T ss_conf             8999999999888999999961958--998688432268899999847655444578858999999898863047-----


Q ss_pred             HHHHHHHHHHHHHCCEEECCCCCCHHHHHH-------------HCCCCCCCCCCCCCCCCCCCHH-------------HH
Q ss_conf             667888998503011020135898566343-------------1289853222233344654200-------------00
Q gi|254780809|r  287 EGIKRTFLEVENADLILLLKEINSKKEISF-------------PKNIDFIFIGTKSDLYSTYTEE-------------YD  340 (440)
Q Consensus       287 ~GI~ra~~~i~~aDlil~v~D~~~~~~~~~-------------~~~~~~i~V~NK~Dl~~~~~~~-------------~~  340 (440)
T Consensus        78 ---~l~~~~~~~a~~~ilvydit~~~Sf~~l~~w~~~i~~~~~~~~~~iilVGNK~DL~~~r~V~~~e~~~~a~~~~~~~  154 (180)
T cd04127          78 ---SLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPY  154 (180)
T ss_pred             ---HHHHHHHHHHCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHCCCCCHHHHHHHHHHCCCEE
T ss_conf             ---88899987543658999689889999899999999985466898578750323667508889999999999849979


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             013333232358999999999632
Q gi|254780809|r  341 HLISSFTGEGLEELINKIKSILSN  364 (440)
Q Consensus       341 ~~ISaktg~Gi~~L~~~I~~~l~~  364 (440)
T Consensus       155 ~E~SAk~g~nV~e~F~~l~~~i~~  178 (180)
T cd04127         155 FETSAATGTNVEKAVERLLDLVMK  178 (180)
T ss_pred             EEECCCCCCCHHHHHHHHHHHHHH
T ss_conf             998037791989999999999997