HHsearch alignment for GI: 254780809 and conserved domain: cd04135

>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.33  E-value=9.6e-12  Score=101.28  Aligned_cols=132  Identities=22%  Similarity=0.315  Sum_probs=91.4

Q ss_pred             CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCE--EEEEEECCHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf             302431146631888999985520002345468721100012456835--899950810002410356666788899850
Q gi|254780809|r  220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY--LVKISDTAGIRETDDIVEKEGIKRTFLEVE  297 (440)
Q Consensus       220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~--~~~l~DTaGir~t~d~IE~~GI~ra~~~i~  297 (440)
T Consensus         1 ~Kiv~vGd~~VGKTsli~rf~~~~f--~~~y~pTi~~~~~~~i~v~~~~~~l~i~DTaG~e~~~--------~~~~~~~~   70 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAF--PEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYD--------RLRPLSYP   70 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCEEEEEEEEEEEECCEEEEEEEEECCCCCCCH--------HHHHHHHC
T ss_conf             9899999899859999999962989--9886885752022799999999999999797640315--------56599855


Q ss_pred             HHCCEEECCCCCCHHHHHH------------HCCCCCCCCCCCCCCCCCCC--------------H--------HH----
Q ss_conf             3011020135898566343------------12898532222333446542--------------0--------00----
Q gi|254780809|r  298 NADLILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYSTYT--------------E--------EY----  339 (440)
Q Consensus       298 ~aDlil~v~D~~~~~~~~~------------~~~~~~i~V~NK~Dl~~~~~--------------~--------~~----  339 (440)
T Consensus        71 ~a~~~ilvydi~~~~Sf~~~~~~w~~~~~~~~~~~piilvgnK~DL~~~~~~~~~~~~~~~r~Vs~eeg~~~A~~~g~~~  150 (174)
T cd04135          71 MTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHC  150 (174)
T ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHCCCHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCE
T ss_conf             78767898437977889999999999999868499889996852300443455453004576639999999999779989


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             0013333232358999999999
Q gi|254780809|r  340 DHLISSFTGEGLEELINKIKSI  361 (440)
Q Consensus       340 ~~~ISaktg~Gi~~L~~~I~~~  361 (440)
T Consensus       151 f~E~SAkt~~nV~e~F~~~i~~  172 (174)
T cd04135         151 YVECSALTQKGLKTVFDEAILA  172 (174)
T ss_pred             EEEECCCCCCCHHHHHHHHHHH
T ss_conf             9990548794989999999999