HHsearch alignment for GI: 254780809 and conserved domain: cd04135
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.33 E-value=9.6e-12 Score=101.28 Aligned_cols=132 Identities=22% Similarity=0.315 Sum_probs=91.4
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCE--EEEEEECCHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 302431146631888999985520002345468721100012456835--899950810002410356666788899850
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY--LVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~--~~~l~DTaGir~t~d~IE~~GI~ra~~~i~ 297 (440)
T Consensus 1 ~Kiv~vGd~~VGKTsli~rf~~~~f--~~~y~pTi~~~~~~~i~v~~~~~~l~i~DTaG~e~~~--------~~~~~~~~ 70 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAF--PEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYD--------RLRPLSYP 70 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCEEEEEEEEEEEECCEEEEEEEEECCCCCCCH--------HHHHHHHC
T ss_conf 9899999899859999999962989--9886885752022799999999999999797640315--------56599855
Q ss_pred HHCCEEECCCCCCHHHHHH------------HCCCCCCCCCCCCCCCCCCC--------------H--------HH----
Q ss_conf 3011020135898566343------------12898532222333446542--------------0--------00----
Q gi|254780809|r 298 NADLILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYSTYT--------------E--------EY---- 339 (440)
Q Consensus 298 ~aDlil~v~D~~~~~~~~~------------~~~~~~i~V~NK~Dl~~~~~--------------~--------~~---- 339 (440)
T Consensus 71 ~a~~~ilvydi~~~~Sf~~~~~~w~~~~~~~~~~~piilvgnK~DL~~~~~~~~~~~~~~~r~Vs~eeg~~~A~~~g~~~ 150 (174)
T cd04135 71 MTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHC 150 (174)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHCCCHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCE
T ss_conf 78767898437977889999999999999868499889996852300443455453004576639999999999779989
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0013333232358999999999
Q gi|254780809|r 340 DHLISSFTGEGLEELINKIKSI 361 (440)
Q Consensus 340 ~~~ISaktg~Gi~~L~~~I~~~ 361 (440)
T Consensus 151 f~E~SAkt~~nV~e~F~~~i~~ 172 (174)
T cd04135 151 YVECSALTQKGLKTVFDEAILA 172 (174)
T ss_pred EEEECCCCCCCHHHHHHHHHHH
T ss_conf 9990548794989999999999