HHsearch alignment for GI: 254780809 and conserved domain: cd04148
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.42 E-value=1.4e-12 Score=107.09 Aligned_cols=134 Identities=17% Similarity=0.193 Sum_probs=92.2
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCC-EEECCCCCCCCCEE--EEEEECCHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 30243114663188899998552000234546872-11000124568358--9995081000241035666678889985
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT-RDVLTIDLDLEGYL--VKISDTAGIRETDDIVEKEGIKRTFLEV 296 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTT-RD~i~~~~~i~g~~--~~l~DTaGir~t~d~IE~~GI~ra~~~i 296 (440)
T Consensus 1 yKVvllGd~gVGKTSLi~rf~~~~-f~~~~y~~t~~~d~~~k~v~vd~~~~~l~i~Dt~g~e~~---------~~~~~~~ 70 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGE-YDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEMW---------TEDSCMQ 70 (221)
T ss_pred CEEEEECCCCCHHHHHHHHHHHCC-CCCCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCHHH---------HHHHHHH
T ss_conf 979999989970999999998198-698667874424889999999999989999989873126---------6665653
Q ss_pred HHHCCEEECCCCCCHHHHHH-------------HCCCCCCCCCCCCCCCCCCCHH-------------HHHHHHHHHHHH
Q ss_conf 03011020135898566343-------------1289853222233344654200-------------000133332323
Q gi|254780809|r 297 ENADLILLLKEINSKKEISF-------------PKNIDFIFIGTKSDLYSTYTEE-------------YDHLISSFTGEG 350 (440)
Q Consensus 297 ~~aDlil~v~D~~~~~~~~~-------------~~~~~~i~V~NK~Dl~~~~~~~-------------~~~~ISaktg~G 350 (440)
T Consensus 71 ~~ada~ilVYdvtdr~SF~~~~~~~~~l~~~~~~~~~piILVGNK~DL~~~R~Vs~eEg~~~A~~~~~~F~EtSAk~~~N 150 (221)
T cd04148 71 YQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHN 150 (221)
T ss_pred HCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHCCCCHHHHHHHHHHCCCEEEECCCCCCCC
T ss_conf 06868999996466778888999999999864899951999853566686389999999999998599899945799949
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 5899999999963
Q gi|254780809|r 351 LEELINKIKSILS 363 (440)
Q Consensus 351 i~~L~~~I~~~l~ 363 (440)
T Consensus 151 V~elF~~lvrqIr 163 (221)
T cd04148 151 VDELLEGIVRQIR 163 (221)
T ss_pred HHHHHHHHHHHHH
T ss_conf 8999999999998