HHsearch alignment for GI: 254780809 and conserved domain: cd04156
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.52 E-value=4.8e-14 Score=117.28 Aligned_cols=128 Identities=26% Similarity=0.372 Sum_probs=89.3
Q ss_pred CEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCC-EEEEEEECCHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 0243114663188899998552000234546872110001245683-589995081000241035666678889985030
Q gi|254780809|r 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 (440)
Q Consensus 221 ~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g-~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~a 299 (440)
T Consensus 1 KivilG~~~~GKTsil~r~~~~~~~~~~pTig~~----~~~~~~~~~~~l~iwD~~G~e~~~--------~~~~~y~~~a 68 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFN----VEMLQLEKHLSLTVWDVGGQEKMR--------TVWKCYLENT 68 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEE----EEEEEECCEEEEEEEECCCCCCCC--------HHHHHHHCCC
T ss_conf 9999999999999999999569877757761503----899998998999999789862474--------1588774567
Q ss_pred CCEEECCCCCCHHHHH-------------HHCCCCCCCCCCCCCCCCCCCHH-----------------HHHHHHHHHHH
Q ss_conf 1102013589856634-------------31289853222233344654200-----------------00013333232
Q gi|254780809|r 300 DLILLLKEINSKKEIS-------------FPKNIDFIFIGTKSDLYSTYTEE-----------------YDHLISSFTGE 349 (440)
Q Consensus 300 Dlil~v~D~~~~~~~~-------------~~~~~~~i~V~NK~Dl~~~~~~~-----------------~~~~ISaktg~ 349 (440)
T Consensus 69 ~~iI~V~D~td~~~~~~~~~~~~~~l~~~~~~~~pili~~NK~Dl~~~~~~~ei~~~l~~~~~~~~~~~~i~~~SAktGe 148 (160)
T cd04156 69 DGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGE 148 (160)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf 78999985686788787999999998663537874999998633656679999999986999985399999986688495
Q ss_pred HHHHHHHHHHH
Q ss_conf 35899999999
Q gi|254780809|r 350 GLEELINKIKS 360 (440)
Q Consensus 350 Gi~~L~~~I~~ 360 (440)
T Consensus 149 gi~e~f~~la~ 159 (160)
T cd04156 149 GLAEAFRKLAS 159 (160)
T ss_pred CHHHHHHHHHC
T ss_conf 99999999857