HHsearch alignment for GI: 254780809 and conserved domain: cd04156

>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.52  E-value=4.8e-14  Score=117.28  Aligned_cols=128  Identities=26%  Similarity=0.372  Sum_probs=89.3

Q ss_pred             CEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCC-EEEEEEECCHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             0243114663188899998552000234546872110001245683-589995081000241035666678889985030
Q gi|254780809|r  221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENA  299 (440)
Q Consensus       221 ~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g-~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~a  299 (440)
T Consensus         1 KivilG~~~~GKTsil~r~~~~~~~~~~pTig~~----~~~~~~~~~~~l~iwD~~G~e~~~--------~~~~~y~~~a   68 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFN----VEMLQLEKHLSLTVWDVGGQEKMR--------TVWKCYLENT   68 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEE----EEEEEECCEEEEEEEECCCCCCCC--------HHHHHHHCCC
T ss_conf             9999999999999999999569877757761503----899998998999999789862474--------1588774567


Q ss_pred             CCEEECCCCCCHHHHH-------------HHCCCCCCCCCCCCCCCCCCCHH-----------------HHHHHHHHHHH
Q ss_conf             1102013589856634-------------31289853222233344654200-----------------00013333232
Q gi|254780809|r  300 DLILLLKEINSKKEIS-------------FPKNIDFIFIGTKSDLYSTYTEE-----------------YDHLISSFTGE  349 (440)
Q Consensus       300 Dlil~v~D~~~~~~~~-------------~~~~~~~i~V~NK~Dl~~~~~~~-----------------~~~~ISaktg~  349 (440)
T Consensus        69 ~~iI~V~D~td~~~~~~~~~~~~~~l~~~~~~~~pili~~NK~Dl~~~~~~~ei~~~l~~~~~~~~~~~~i~~~SAktGe  148 (160)
T cd04156          69 DGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGE  148 (160)
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf             78999985686788787999999998663537874999998633656679999999986999985399999986688495


Q ss_pred             HHHHHHHHHHH
Q ss_conf             35899999999
Q gi|254780809|r  350 GLEELINKIKS  360 (440)
Q Consensus       350 Gi~~L~~~I~~  360 (440)
T Consensus       149 gi~e~f~~la~  159 (160)
T cd04156         149 GLAEAFRKLAS  159 (160)
T ss_pred             CHHHHHHHHHC
T ss_conf             99999999857