HHsearch alignment for GI: 254780809 and conserved domain: cd04161

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.22  E-value=3.8e-11  Score=97.13  Aligned_cols=123  Identities=20%  Similarity=0.219  Sum_probs=87.8

Q ss_pred             CEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHH-HHHHHHHH
Q ss_conf             02431146631888999985520002345468721100012456835899950810002410356666788-89985030
Q gi|254780809|r  221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR-TFLEVENA  299 (440)
Q Consensus       221 ~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~r-a~~~i~~a  299 (440)
T Consensus         1 sililGLd~aGKTTil~~l~~~~~~~~~PT~G----~~~~~~~~~~~~l~~~DlgG~~~---------~R~lW~~Y~~~~   67 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVG----FTPTKLRLDKYEVCIFDLGGGAN---------FRGIWVNYYAEA   67 (167)
T ss_pred             CEEEEEECCCCHHHHHHHHCCCCCCCCCCCCC----CCEEEEEECCEEEEEEECCCCHH---------HHHHHHHHCCCC
T ss_conf             98999008998899999982899876508777----31799998999999998998778---------889999873477


Q ss_pred             CCEEECCCCCCHHHHH-------------HHCCCCCCCCCCCCCCCCCCCHH-------------------HHHHHHHHH
Q ss_conf             1102013589856634-------------31289853222233344654200-------------------000133332
Q gi|254780809|r  300 DLILLLKEINSKKEIS-------------FPKNIDFIFIGTKSDLYSTYTEE-------------------YDHLISSFT  347 (440)
Q Consensus       300 Dlil~v~D~~~~~~~~-------------~~~~~~~i~V~NK~Dl~~~~~~~-------------------~~~~ISakt  347 (440)
T Consensus        68 ~gIIfVVDssD~~rl~eak~~L~~lL~~~~l~~~PiLIlaNKqDl~~a~~~~ei~~~L~L~~l~~~~~~~~~I~~csA~t  147 (167)
T cd04161          68 HGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIE  147 (167)
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHCCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHCCHHHCCCCCCEEEEEECEEEC
T ss_conf             65799985575889999999999996588778995999988657615899999998819742408998637999576444


Q ss_pred             HHH------HHHHHH
Q ss_conf             323------589999
Q gi|254780809|r  348 GEG------LEELIN  356 (440)
Q Consensus       348 g~G------i~~L~~  356 (440)
T Consensus       148 G~G~~~~~~l~eGl~  162 (167)
T cd04161         148 GLGKKIDPSIVEGLR  162 (167)
T ss_pred             CCCCCCCCCHHHHHH
T ss_conf             888787663154998