HHsearch alignment for GI: 254780809 and conserved domain: cd04161
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.22 E-value=3.8e-11 Score=97.13 Aligned_cols=123 Identities=20% Similarity=0.219 Sum_probs=87.8
Q ss_pred CEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHH-HHHHHHHH
Q ss_conf 02431146631888999985520002345468721100012456835899950810002410356666788-89985030
Q gi|254780809|r 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR-TFLEVENA 299 (440)
Q Consensus 221 ~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~r-a~~~i~~a 299 (440)
T Consensus 1 sililGLd~aGKTTil~~l~~~~~~~~~PT~G----~~~~~~~~~~~~l~~~DlgG~~~---------~R~lW~~Y~~~~ 67 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVG----FTPTKLRLDKYEVCIFDLGGGAN---------FRGIWVNYYAEA 67 (167)
T ss_pred CEEEEEECCCCHHHHHHHHCCCCCCCCCCCCC----CCEEEEEECCEEEEEEECCCCHH---------HHHHHHHHCCCC
T ss_conf 98999008998899999982899876508777----31799998999999998998778---------889999873477
Q ss_pred CCEEECCCCCCHHHHH-------------HHCCCCCCCCCCCCCCCCCCCHH-------------------HHHHHHHHH
Q ss_conf 1102013589856634-------------31289853222233344654200-------------------000133332
Q gi|254780809|r 300 DLILLLKEINSKKEIS-------------FPKNIDFIFIGTKSDLYSTYTEE-------------------YDHLISSFT 347 (440)
Q Consensus 300 Dlil~v~D~~~~~~~~-------------~~~~~~~i~V~NK~Dl~~~~~~~-------------------~~~~ISakt 347 (440)
T Consensus 68 ~gIIfVVDssD~~rl~eak~~L~~lL~~~~l~~~PiLIlaNKqDl~~a~~~~ei~~~L~L~~l~~~~~~~~~I~~csA~t 147 (167)
T cd04161 68 HGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIE 147 (167)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHCCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHCCHHHCCCCCCEEEEEECEEEC
T ss_conf 65799985575889999999999996588778995999988657615899999998819742408998637999576444
Q ss_pred HHH------HHHHHH
Q ss_conf 323------589999
Q gi|254780809|r 348 GEG------LEELIN 356 (440)
Q Consensus 348 g~G------i~~L~~ 356 (440)
T Consensus 148 G~G~~~~~~l~eGl~ 162 (167)
T cd04161 148 GLGKKIDPSIVEGLR 162 (167)
T ss_pred CCCCCCCCCHHHHHH
T ss_conf 888787663154998