HHsearch alignment for GI: 254780809 and conserved domain: cd04167
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=98.40 E-value=6.1e-07 Score=67.95 Aligned_cols=104 Identities=22% Similarity=0.289 Sum_probs=65.6
Q ss_pred CEEEECCCCCCHHHHHHHHHCCHHCCC---CCCCCCCE--EEC----CCCC--------------CCCCEEEEEEECCHH
Q ss_conf 024311466318889999855200023---45468721--100----0124--------------568358999508100
Q gi|254780809|r 221 KIVILGHSNAGKSSLFNALAKKDVAIV---TDIPGTTR--DVL----TIDL--------------DLEGYLVKISDTAGI 277 (440)
Q Consensus 221 ~v~i~G~pN~GKSSL~N~L~~~~~aIV---s~~~GTTR--D~i----~~~~--------------~i~g~~~~l~DTaGi 277 (440)
T Consensus 2 NvaiigHvdhGKTTL~d~Ll~~t~~~~~~~~~~~~~~~~~D~~~~E~eRgiTI~s~~~sl~~~~~~~k~~~inlIDTPGH 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCEECCEEEEEEECCCCCEEEEEEEECCCC
T ss_conf 59998278989899999999973445554044421135751646654203558614599998256675057877889872
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCEEECCCCCCHHH--------HHHHCCCCCCCCCCCCCCC
Q ss_conf 024103566667888998503011020135898566--------3431289853222233344
Q gi|254780809|r 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTKSDLY 332 (440)
Q Consensus 278 r~t~d~IE~~GI~ra~~~i~~aDlil~v~D~~~~~~--------~~~~~~~~~i~V~NK~Dl~ 332 (440)
T Consensus 82 ~dF~~ev--------~~al~~~DgailVVDa~eGv~~qT~~~l~~a~~~~l~~ilviNKiDRL 136 (213)
T cd04167 82 VNFMDEV--------AAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRL 136 (213)
T ss_pred HHHHHHH--------HHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf 4179999--------988863776799998788875779999999998699989999882343