HHsearch alignment for GI: 254780809 and conserved domain: cd04173
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.14 E-value=3.6e-10 Score=90.39 Aligned_cols=133 Identities=20% Similarity=0.290 Sum_probs=88.3
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCE--EEEEEECCHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 302431146631888999985520002345468721100012456835--899950810002410356666788899850
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY--LVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~--~~~l~DTaGir~t~d~IE~~GI~ra~~~i~ 297 (440)
T Consensus 2 ~KiVlvGD~~VGKTsLl~~f~~~~F--~~~y~pTi~~~~~~~~~vd~~~v~L~iWDTAGqE~y~----~--l--r~~yyr 71 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAY--PGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYD----N--V--RPLAYP 71 (222)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC--CCCCCCCEEEEEEEEEEECCEEEEEEEECCCCCCHHH----H--H--HHHHCC
T ss_conf 0999989899898999999963999--9984784587789999999999999997688850345----5--6--787503
Q ss_pred HHCCEEECCCCCCHHHHHH------------HCCCCCCCCCCCCCCCCCCC---------------HH-----------H
Q ss_conf 3011020135898566343------------12898532222333446542---------------00-----------0
Q gi|254780809|r 298 NADLILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYSTYT---------------EE-----------Y 339 (440)
Q Consensus 298 ~aDlil~v~D~~~~~~~~~------------~~~~~~i~V~NK~Dl~~~~~---------------~~-----------~ 339 (440)
T Consensus 72 ~a~~~llvfdit~~~SF~~v~~~W~~ei~~~~p~~piiLVGnK~DLR~d~~~~~el~~~~~~pVt~eeg~~lA~~~ga~~ 151 (222)
T cd04173 72 DSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVS 151 (222)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCE
T ss_conf 69899999838977889999999999999858999789995874245687889999855788878999999999769988
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHH
Q ss_conf 0013333232-3589999999996
Q gi|254780809|r 340 DHLISSFTGE-GLEELINKIKSIL 362 (440)
Q Consensus 340 ~~~ISaktg~-Gi~~L~~~I~~~l 362 (440)
T Consensus 152 y~EcSAk~~~n~V~evF~~a~~~~ 175 (222)
T cd04173 152 YVECSSRSSERSVRDVFHVATVAS 175 (222)
T ss_pred EEECCCCCCCCCHHHHHHHHHHHH
T ss_conf 998884868749899999999999