HHsearch alignment for GI: 254780809 and conserved domain: cd04173

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.14  E-value=3.6e-10  Score=90.39  Aligned_cols=133  Identities=20%  Similarity=0.290  Sum_probs=88.3

Q ss_pred             CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCE--EEEEEECCHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf             302431146631888999985520002345468721100012456835--899950810002410356666788899850
Q gi|254780809|r  220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY--LVKISDTAGIRETDDIVEKEGIKRTFLEVE  297 (440)
Q Consensus       220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~--~~~l~DTaGir~t~d~IE~~GI~ra~~~i~  297 (440)
T Consensus         2 ~KiVlvGD~~VGKTsLl~~f~~~~F--~~~y~pTi~~~~~~~~~vd~~~v~L~iWDTAGqE~y~----~--l--r~~yyr   71 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDAY--PGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYD----N--V--RPLAYP   71 (222)
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCC--CCCCCCCEEEEEEEEEEECCEEEEEEEECCCCCCHHH----H--H--HHHHCC
T ss_conf             0999989899898999999963999--9984784587789999999999999997688850345----5--6--787503


Q ss_pred             HHCCEEECCCCCCHHHHHH------------HCCCCCCCCCCCCCCCCCCC---------------HH-----------H
Q ss_conf             3011020135898566343------------12898532222333446542---------------00-----------0
Q gi|254780809|r  298 NADLILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYSTYT---------------EE-----------Y  339 (440)
Q Consensus       298 ~aDlil~v~D~~~~~~~~~------------~~~~~~i~V~NK~Dl~~~~~---------------~~-----------~  339 (440)
T Consensus        72 ~a~~~llvfdit~~~SF~~v~~~W~~ei~~~~p~~piiLVGnK~DLR~d~~~~~el~~~~~~pVt~eeg~~lA~~~ga~~  151 (222)
T cd04173          72 DSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVS  151 (222)
T ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCE
T ss_conf             69899999838977889999999999999858999789995874245687889999855788878999999999769988


Q ss_pred             HHHHHHHHHH-HHHHHHHHHHHHH
Q ss_conf             0013333232-3589999999996
Q gi|254780809|r  340 DHLISSFTGE-GLEELINKIKSIL  362 (440)
Q Consensus       340 ~~~ISaktg~-Gi~~L~~~I~~~l  362 (440)
T Consensus       152 y~EcSAk~~~n~V~evF~~a~~~~  175 (222)
T cd04173         152 YVECSSRSSERSVRDVFHVATVAS  175 (222)
T ss_pred             EEECCCCCCCCCHHHHHHHHHHHH
T ss_conf             998884868749899999999999