HHsearch alignment for GI: 254780809 and conserved domain: cd04176
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.46 E-value=3.3e-13 Score=111.47 Aligned_cols=133 Identities=21% Similarity=0.281 Sum_probs=96.0
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEE--EEEEECCHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 3024311466318889999855200023454687211000124568358--99950810002410356666788899850
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL--VKISDTAGIRETDDIVEKEGIKRTFLEVE 297 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~--~~l~DTaGir~t~d~IE~~GI~ra~~~i~ 297 (440)
T Consensus 2 ~KivllGd~~VGKTsli~r~~~~~f--~~~y~pTi~~~~~k~i~~~~~~~~l~iwDtaG~e~~~--------~~~~~~~~ 71 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTF--IEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFA--------SMRDLYIK 71 (163)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCCEEEEEEEECCEEEEEEEEECCCCHHHH--------HHHHHHHC
T ss_conf 3999989999789999999970989--9755885233167999988899999999898854256--------78899855
Q ss_pred HHCCEEECCCCCCHHHHHH-------------HCCCCCCCCCCCCCCCCCCCHH-------------HHHHHHHHHHHHH
Q ss_conf 3011020135898566343-------------1289853222233344654200-------------0001333323235
Q gi|254780809|r 298 NADLILLLKEINSKKEISF-------------PKNIDFIFIGTKSDLYSTYTEE-------------YDHLISSFTGEGL 351 (440)
Q Consensus 298 ~aDlil~v~D~~~~~~~~~-------------~~~~~~i~V~NK~Dl~~~~~~~-------------~~~~ISaktg~Gi 351 (440)
T Consensus 72 ~a~~~ilvydit~~~Sf~~l~~~~~~i~~~~~~~~~piilVgNK~DL~~~r~V~~~e~~~~a~~~~~~~~E~SAk~~~nV 151 (163)
T cd04176 72 NGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMV 151 (163)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCH
T ss_conf 78656897127988999999999999999738999639997431340012769999999999985998999856878177
Q ss_pred HHHHHHHHHHH
Q ss_conf 89999999996
Q gi|254780809|r 352 EELINKIKSIL 362 (440)
Q Consensus 352 ~~L~~~I~~~l 362 (440)
T Consensus 152 ~~~F~~l~~~i 162 (163)
T cd04176 152 NELFAEIVRQM 162 (163)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999953