HHsearch alignment for GI: 254780809 and conserved domain: cd04178
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.55 E-value=3.3e-15 Score=125.27 Aligned_cols=69 Identities=29% Similarity=0.467 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHH
Q ss_conf 333223455432023024311466318889999855200023454687211000124568358999508100
Q gi|254780809|r 206 HISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 (440)
Q Consensus 206 ll~~~~~~~~l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGi 277 (440)
T Consensus 104 ~~~~~~~~~~~~~~i~v~vvG~PNVGKSSlIN~L~~~k~~~v~~~PG~Tk~~q~i~--l~~-~i~L~DtPGv 172 (172)
T cd04178 104 LLKNYSRNKDIKTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVH--LDK-KVKLLDSPGI 172 (172)
T ss_pred HHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCEEEECCCCCEEEEEEEEE--ECC-CEEEEECCCC
T ss_conf 99987552477665599998347742578998873474477659995476679999--589-9899969199