HHsearch alignment for GI: 254780809 and conserved domain: pfam03308

>pfam03308 ArgK ArgK protein. The ArgK protein acts as an ATPase enzyme and as a kinase, and phosphorylates periplasmic binding proteins involved in the LAO (lysine, arginine, ornithine)/AO transport systems.
Probab=99.20  E-value=4.5e-11  Score=96.65  Aligned_cols=159  Identities=25%  Similarity=0.303  Sum_probs=101.9

Q ss_pred             HCCCEEEECCCCCCHHHHHHHHHC------CHHCCC-----CCCCC----------------------------------
Q ss_conf             023024311466318889999855------200023-----45468----------------------------------
Q gi|254780809|r  218 NGYKIVILGHSNAGKSSLFNALAK------KDVAIV-----TDIPG----------------------------------  252 (440)
Q Consensus       218 ~g~~v~i~G~pN~GKSSL~N~L~~------~~~aIV-----s~~~G----------------------------------  252 (440)
T Consensus        28 ~a~~iGiTG~PGaGKStli~~l~~~~~~~g~~vaVlAvDPSS~~sgGaiLGDr~RM~~~~~~~~vfiRs~~srg~lGGls  107 (267)
T pfam03308        28 RAHRVGITGVPGAGKSTLIEALGMELRRRGHRVAVLAVDPSSPFTGGSILGDRTRMQRLAVDPGAFIRSSPSRGALGGLS  107 (267)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCC
T ss_conf             95599876899887999999999999968986899997899988886300107777650589985886457788888714


Q ss_pred             -CCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHHHHHHHCCEEECCCCCCHHHHHHHC----CCCCCCCCC
Q ss_conf             -721100012456835899950810002410356666788899850301102013589856634312----898532222
Q gi|254780809|r  253 -TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK----NIDFIFIGT  327 (440)
Q Consensus       253 -TTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~aDlil~v~D~~~~~~~~~~~----~~~~i~V~N  327 (440)
T Consensus       108 ~~t~~~i~-lleaaGfD~IivETVGVGQsE~~v-----------~~~aD~~llv~~Pg~GDeiQ~iKaGImEiaDi~vVN  175 (267)
T pfam03308       108 RATREAIL-LLDAAGFDVIIIETVGVGQSEVDI-----------ANMADTFVLVTIPGGGDDLQGIKAGLMEIADIYVVN  175 (267)
T ss_pred             HHHHHHHH-HHHHCCCCEEEEECCCCCCCCHHH-----------HHHCCEEEEEECCCCCHHHHHHHHHHHHHCCEEEEE
T ss_conf             76999999-999779999999247777530355-----------541576899955887608889875376535489996


Q ss_pred             CCCCCCCCC-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHH
Q ss_conf             333446542-------------------0000013333232358999999999632203588632014899999999999
Q gi|254780809|r  328 KSDLYSTYT-------------------EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR  388 (440)
Q Consensus       328 K~Dl~~~~~-------------------~~~~~~ISaktg~Gi~~L~~~I~~~l~~~~~~~~~~i~~~~Rq~~~L~~a~~  388 (440)
T Consensus       176 KaD~~~A~~~~~~l~~~l~l~~~~~~~W~p~Vl~tSA~~g~Gi~el~~~I~~~~~~l~~---sG~l~~rR~~q~~~w~~~  252 (267)
T pfam03308       176 KADLPGAERTARELRSALHLLTPKEAGWRPPVLTTSAVTGEGIDELWDAIEEHREFLTA---TGLLAARRRARIEEWLKT  252 (267)
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHH
T ss_conf             67647699999999999851798778999998998747889999999999999999997---886999999999999999


Q ss_pred             HHH
Q ss_conf             999
Q gi|254780809|r  389 YLE  391 (440)
Q Consensus       389 ~L~  391 (440)
T Consensus       253 ~I~  255 (267)
T pfam03308       253 LVE  255 (267)
T ss_pred             HHH
T ss_conf             999