HHsearch alignment for GI: 254780809 and conserved domain: pfam03308
>pfam03308 ArgK ArgK protein. The ArgK protein acts as an ATPase enzyme and as a kinase, and phosphorylates periplasmic binding proteins involved in the LAO (lysine, arginine, ornithine)/AO transport systems.
Probab=99.20 E-value=4.5e-11 Score=96.65 Aligned_cols=159 Identities=25% Similarity=0.303 Sum_probs=101.9
Q ss_pred HCCCEEEECCCCCCHHHHHHHHHC------CHHCCC-----CCCCC----------------------------------
Q ss_conf 023024311466318889999855------200023-----45468----------------------------------
Q gi|254780809|r 218 NGYKIVILGHSNAGKSSLFNALAK------KDVAIV-----TDIPG---------------------------------- 252 (440)
Q Consensus 218 ~g~~v~i~G~pN~GKSSL~N~L~~------~~~aIV-----s~~~G---------------------------------- 252 (440)
T Consensus 28 ~a~~iGiTG~PGaGKStli~~l~~~~~~~g~~vaVlAvDPSS~~sgGaiLGDr~RM~~~~~~~~vfiRs~~srg~lGGls 107 (267)
T pfam03308 28 RAHRVGITGVPGAGKSTLIEALGMELRRRGHRVAVLAVDPSSPFTGGSILGDRTRMQRLAVDPGAFIRSSPSRGALGGLS 107 (267)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCC
T ss_conf 95599876899887999999999999968986899997899988886300107777650589985886457788888714
Q ss_pred -CCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHHHHHHHCCEEECCCCCCHHHHHHHC----CCCCCCCCC
Q ss_conf -721100012456835899950810002410356666788899850301102013589856634312----898532222
Q gi|254780809|r 253 -TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK----NIDFIFIGT 327 (440)
Q Consensus 253 -TTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~aDlil~v~D~~~~~~~~~~~----~~~~i~V~N 327 (440)
T Consensus 108 ~~t~~~i~-lleaaGfD~IivETVGVGQsE~~v-----------~~~aD~~llv~~Pg~GDeiQ~iKaGImEiaDi~vVN 175 (267)
T pfam03308 108 RATREAIL-LLDAAGFDVIIIETVGVGQSEVDI-----------ANMADTFVLVTIPGGGDDLQGIKAGLMEIADIYVVN 175 (267)
T ss_pred HHHHHHHH-HHHHCCCCEEEEECCCCCCCCHHH-----------HHHCCEEEEEECCCCCHHHHHHHHHHHHHCCEEEEE
T ss_conf 76999999-999779999999247777530355-----------541576899955887608889875376535489996
Q ss_pred CCCCCCCCC-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHH
Q ss_conf 333446542-------------------0000013333232358999999999632203588632014899999999999
Q gi|254780809|r 328 KSDLYSTYT-------------------EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388 (440)
Q Consensus 328 K~Dl~~~~~-------------------~~~~~~ISaktg~Gi~~L~~~I~~~l~~~~~~~~~~i~~~~Rq~~~L~~a~~ 388 (440)
T Consensus 176 KaD~~~A~~~~~~l~~~l~l~~~~~~~W~p~Vl~tSA~~g~Gi~el~~~I~~~~~~l~~---sG~l~~rR~~q~~~w~~~ 252 (267)
T pfam03308 176 KADLPGAERTARELRSALHLLTPKEAGWRPPVLTTSAVTGEGIDELWDAIEEHREFLTA---TGLLAARRRARIEEWLKT 252 (267)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHH
T ss_conf 67647699999999999851798778999998998747889999999999999999997---886999999999999999
Q ss_pred HHH
Q ss_conf 999
Q gi|254780809|r 389 YLE 391 (440)
Q Consensus 389 ~L~ 391 (440)
T Consensus 253 ~I~ 255 (267)
T pfam03308 253 LVE 255 (267)
T ss_pred HHH
T ss_conf 999