HHsearch alignment for GI: 254780809 and conserved domain: pfam05049
>pfam05049 IIGP Interferon-inducible GTPase (IIGP). Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing.
Probab=98.23 E-value=1.1e-05 Score=59.29 Aligned_cols=107 Identities=25% Similarity=0.301 Sum_probs=63.5
Q ss_pred CCCEEEECCCCCCHHHHHHHHHCC-----HHCCCCCCCCCCEEECCCCCCCCCE-EEEEEECCHHCCCCHHHHHHHHHHH
Q ss_conf 230243114663188899998552-----0002345468721100012456835-8999508100024103566667888
Q gi|254780809|r 219 GYKIVILGHSNAGKSSLFNALAKK-----DVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRT 292 (440)
Q Consensus 219 g~~v~i~G~pN~GKSSL~N~L~~~-----~~aIVs~~~GTTRD~i~~~~~i~g~-~~~l~DTaGir~t~d~IE~~GI~ra 292 (440)
T Consensus 35 ~lnIavtGesG~GkSsfINalRg~g~e~~~aA~tGvv-etT~~~~~--Y~hp~~pnV~lwDLPG~gt~~f~~~~Y-l--~ 108 (375)
T pfam05049 35 PLKIAVTGDSGNGKSSFINALRGIGHEEDGSAPTGVV-ETTMKRTP--YSHPHFPNVVLWDLPGLGATNFTVETY-L--E 108 (375)
T ss_pred CEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCE-EECCCCCC--CCCCCCCCEEEECCCCCCCCCCCHHHH-H--H
T ss_conf 2479985489986789999874789877776876876-63267556--789999980796289999899898999-9--8
Q ss_pred HHHHHHHCCEEECCCCC-CHHHHHH-----HCCCCCCCCCCCCCC
Q ss_conf 99850301102013589-8566343-----128985322223334
Q gi|254780809|r 293 FLEVENADLILLLKEIN-SKKEISF-----PKNIDFIFIGTKSDL 331 (440)
Q Consensus 293 ~~~i~~aDlil~v~D~~-~~~~~~~-----~~~~~~i~V~NK~Dl 331 (440)
T Consensus 109 ~~~f~~yDfFiiiss~rf~~n~v~LAk~i~~mgK~fyfVrtKvD~ 153 (375)
T pfam05049 109 EMKFSEYDFFIIISSERFSLNDVKLAKAIQRMGKRFYFVRTKLDS 153 (375)
T ss_pred HCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf 748564778999967754320189999999838947999862367