HHsearch alignment for GI: 254780809 and conserved domain: pfam09439
>pfam09439 SRPRB Signal recognition particle receptor beta subunit. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase which anchors the alpha subunit to the endoplasmic reticulum membrane.
Probab=98.69 E-value=6.1e-08 Score=74.87 Aligned_cols=111 Identities=19% Similarity=0.312 Sum_probs=69.4
Q ss_pred CCCEEEECCCCCCHHHHHHHHHCCHH-CCCCCC-CCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 23024311466318889999855200-023454-6872110001245683589995081000241035666678889985
Q gi|254780809|r 219 GYKIVILGHSNAGKSSLFNALAKKDV-AIVTDI-PGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 (440)
Q Consensus 219 g~~v~i~G~pN~GKSSL~N~L~~~~~-aIVs~~-~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~i 296 (440)
T Consensus 3 ~ptvLllGl~~sGKT~Lf~~L~~~~~~~T~tS~~~n~~----~~~~~~~~~~~~lvD~PGh~klR~~-----~~~~~~~~ 73 (181)
T pfam09439 3 QPAVIIAGLCDSGKTSLFTLLTTGSVRKTVTSQEPSAA----YKYMNNKGNSLTLIDFPGHVKLRYK-----LLETLKDS 73 (181)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCEECCCCCCCE----EEEECCCCCEEEEEECCCCHHHHHH-----HHHHHHHH
T ss_conf 88699986899989999999975994875888678640----6875168966899988996899999-----99864300
Q ss_pred HHHCCEEECCCCC-CHHHH--------H-------HHCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 0301102013589-85663--------4-------31289853222233344654200
Q gi|254780809|r 297 ENADLILLLKEIN-SKKEI--------S-------FPKNIDFIFIGTKSDLYSTYTEE 338 (440)
Q Consensus 297 ~~aDlil~v~D~~-~~~~~--------~-------~~~~~~~i~V~NK~Dl~~~~~~~ 338 (440)
T Consensus 74 ~~~~gIVfVVDS~~~~~~l~~~Ae~Ly~iL~~~~~~~~~vPvLI~cNKqDl~~A~~~~ 131 (181)
T pfam09439 74 SSLRGLVFVVDSTAFPKEVTDTAEFLYDILSITELLKNGIDILIACNKQEIFTARPPK 131 (181)
T ss_pred CCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCHHHCCCCCCEEEEEECCCCCCCCCHH
T ss_conf 2644999999786656679999999999984454336899789997374633577999