HHsearch alignment for GI: 254780809 and conserved domain: pfam10396

>pfam10396 TrmE_N GTP-binding protein TrmE N-terminus. This family represents the shorter, B, chain of the homo-dimeric structure which is a guanine nucleotide-binding protein that binds and hydrolyses GTP. TrmE is homologous to the tetrahydrofolate-binding domain of N,N-dimethylglycine oxidase and indeed binds formyl-tetrahydrofolate. TrmE actively participates in the formylation reaction of uridine and regulates the ensuing hydrogenation reaction of a Schiff's base intermediate. This B chain is the N-terminal portion of the protein consisting of five beta-strands and three alpha helices and is necessary for mediating dimer formation within the protein.
Probab=100.00  E-value=1.4e-45  Score=335.48  Aligned_cols=114  Identities=47%  Similarity=0.768  Sum_probs=110.9

Q ss_pred             CEEEECCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCEEEEEEEEEECCCCCCCCCCEEEEEEC
Q ss_conf             29898468867616999727388999999871668888753899887548986720699999567799887753999808
Q gi|254780809|r    7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVH   86 (440)
Q Consensus         7 TI~A~aTp~g~~aiaviRiSG~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~l~~~f~~P~SyTGEDvvEi~~H   86 (440)
T Consensus         1 TI~AlaT~~g~saiaVIRvSG~~a~~~~~~l~~-~~~~~r~~~~~~~~d~~~~~iD~~lv~~f~~P~SyTGED~vEi~~H   79 (114)
T pfam10396         1 TIAAIATPPGRGGIAIIRISGPDALEIAKKLFG-KLPKPRTAHYGTIRDPNGEVIDEVLVLYFPAPNSFTGEDVVEIHCH   79 (114)
T ss_pred             CEEEECCCCCCCEEEEEEEECCCHHHHHHHHCC-CCCCCCEEEEEEEECCCCCEEEEEEEEEECCCCCCCCCCEEEEEEC
T ss_conf             989976788873699999878448999999736-7999988999999889998841789986069988754447999824


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCC
Q ss_conf             987889999998754432000000368997875215
Q gi|254780809|r   87 GGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK  122 (440)
Q Consensus        87 G~~~i~~~il~~l~~~~g~r~A~pGEFT~RAflNgK  122 (440)
T Consensus        80 G~~~i~~~il~~l~~~-G~R~A~pGEFT~RAflNgK  114 (114)
T pfam10396        80 GGPAVVQAILQALLKL-GARLAEPGEFTRRAFLNGK  114 (114)
T ss_pred             CCHHHHHHHHHHHHHC-CCEECCCCHHHHHHHHCCC
T ss_conf             9879999999999876-9822599706588886689