HHsearch alignment for GI: 254780809 and conserved domain: pfam10396
>pfam10396 TrmE_N GTP-binding protein TrmE N-terminus. This family represents the shorter, B, chain of the homo-dimeric structure which is a guanine nucleotide-binding protein that binds and hydrolyses GTP. TrmE is homologous to the tetrahydrofolate-binding domain of N,N-dimethylglycine oxidase and indeed binds formyl-tetrahydrofolate. TrmE actively participates in the formylation reaction of uridine and regulates the ensuing hydrogenation reaction of a Schiff's base intermediate. This B chain is the N-terminal portion of the protein consisting of five beta-strands and three alpha helices and is necessary for mediating dimer formation within the protein.
Probab=100.00 E-value=1.4e-45 Score=335.48 Aligned_cols=114 Identities=47% Similarity=0.768 Sum_probs=110.9
Q ss_pred CEEEECCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCEEEEEEEEEECCCCCCCCCCEEEEEEC
Q ss_conf 29898468867616999727388999999871668888753899887548986720699999567799887753999808
Q gi|254780809|r 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVH 86 (440)
Q Consensus 7 TI~A~aTp~g~~aiaviRiSG~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~l~~~f~~P~SyTGEDvvEi~~H 86 (440)
T Consensus 1 TI~AlaT~~g~saiaVIRvSG~~a~~~~~~l~~-~~~~~r~~~~~~~~d~~~~~iD~~lv~~f~~P~SyTGED~vEi~~H 79 (114)
T pfam10396 1 TIAAIATPPGRGGIAIIRISGPDALEIAKKLFG-KLPKPRTAHYGTIRDPNGEVIDEVLVLYFPAPNSFTGEDVVEIHCH 79 (114)
T ss_pred CEEEECCCCCCCEEEEEEEECCCHHHHHHHHCC-CCCCCCEEEEEEEECCCCCEEEEEEEEEECCCCCCCCCCEEEEEEC
T ss_conf 989976788873699999878448999999736-7999988999999889998841789986069988754447999824
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCC
Q ss_conf 987889999998754432000000368997875215
Q gi|254780809|r 87 GGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 (440)
Q Consensus 87 G~~~i~~~il~~l~~~~g~r~A~pGEFT~RAflNgK 122 (440)
T Consensus 80 G~~~i~~~il~~l~~~-G~R~A~pGEFT~RAflNgK 114 (114)
T pfam10396 80 GGPAVVQAILQALLKL-GARLAEPGEFTRRAFLNGK 114 (114)
T ss_pred CCHHHHHHHHHHHHHC-CCEECCCCHHHHHHHHCCC
T ss_conf 9879999999999876-9822599706588886689