BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780809|ref|YP_003065222.1| tRNA modification GTPase TrmE [Candidatus Liberibacter asiaticus str. psy62] (440 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780809|ref|YP_003065222.1| tRNA modification GTPase TrmE [Candidatus Liberibacter asiaticus str. psy62] gi|254040486|gb|ACT57282.1| tRNA modification GTPase TrmE [Candidatus Liberibacter asiaticus str. psy62] Length = 440 Score = 885 bits (2286), Expect = 0.0, Method: Compositional matrix adjust. Identities = 440/440 (100%), Positives = 440/440 (100%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI Sbjct: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN Sbjct: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE Sbjct: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA Sbjct: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD Sbjct: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 Query: 301 LILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKS 360 LILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKS Sbjct: 301 LILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKS 360 Query: 361 ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKIT 420 ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKIT Sbjct: 361 ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKIT 420 Query: 421 GCVDVEQLLDIIFSKFCIGK 440 GCVDVEQLLDIIFSKFCIGK Sbjct: 421 GCVDVEQLLDIIFSKFCIGK 440 >gi|315122032|ref|YP_004062521.1| tRNA modification GTPase TrmE [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495434|gb|ADR52033.1| tRNA modification GTPase TrmE [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 440 Score = 745 bits (1923), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/440 (84%), Positives = 403/440 (91%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 MN+EK+TIFA+S+G LPSAIS+IRLSG SCFQVCEFICKKK P PR ASLR+F+G DGRI Sbjct: 1 MNYEKKTIFALSSGILPSAISVIRLSGSSCFQVCEFICKKKNPLPRVASLRFFYGFDGRI 60 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LDKGLLI+FPSP+SFTGED AEFHVHGGI+VV+GILEELAKMPNLR ANPGEFSRRAFEN Sbjct: 61 LDKGLLILFPSPKSFTGEDCAEFHVHGGISVVDGILEELAKMPNLRRANPGEFSRRAFEN 120 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GKIDLLEAESLADLISSETEMQRRLSMEGMSG+LS+LY WI+KLT++RSFIEADLDFS+ Sbjct: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGKLSNLYNGWINKLTYVRSFIEADLDFSD 180 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EEDVQ FSSKE+ NDIL LK++ISSHISQGKLGEIIRNGYKIVILG+SNAGKSSL NALA Sbjct: 181 EEDVQKFSSKEIWNDILLLKDEISSHISQGKLGEIIRNGYKIVILGNSNAGKSSLLNALA 240 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 K+DVAIVTD+PGTTRDV+TIDLDL GYLVKISDTAGIRET+ IVEKEGIKR F EVENAD Sbjct: 241 KRDVAIVTDVPGTTRDVITIDLDLGGYLVKISDTAGIRETNSIVEKEGIKRAFREVENAD 300 Query: 301 LILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKS 360 LILLL+EI+SK EI FPKNI FIFIGTKSDLY +EYDHLISS TGEGLEELINKIK+ Sbjct: 301 LILLLEEISSKTEILFPKNIAFIFIGTKSDLYDNSFKEYDHLISSVTGEGLEELINKIKN 360 Query: 361 ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKIT 420 I+SNKFK IPSHKRHL HLSQ V+YLE AS EKDCGLDIIAENLRLAS+SLG+IT Sbjct: 361 IISNKFKTNSMFIPSHKRHLDHLSQAVKYLEDASSGEKDCGLDIIAENLRLASISLGRIT 420 Query: 421 GCVDVEQLLDIIFSKFCIGK 440 G VDVEQLLDIIFSKFCIGK Sbjct: 421 GNVDVEQLLDIIFSKFCIGK 440 >gi|222087929|ref|YP_002546467.1| tRNA modification GTPase TrmE [Agrobacterium radiobacter K84] gi|221725377|gb|ACM28533.1| tRNA modification GTPase TrmE [Agrobacterium radiobacter K84] Length = 444 Score = 428 bits (1101), Expect = e-118, Method: Compositional matrix adjust. Identities = 221/441 (50%), Positives = 302/441 (68%), Gaps = 3/441 (0%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 MN +TIFA+S+GALP+ ++++R+SGP + P PR+A+L+ +G Sbjct: 6 MNAIGDTIFALSSGALPAGVAVVRISGPKALAAVAAL-AGTLPKPRQAALKTIRTRNGLT 64 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+GL++VFP+P SFTGED AE VHGG AVV +L+EL+ RLA GEFSRRA EN Sbjct: 65 IDQGLVLVFPAPASFTGEDCAEIQVHGGKAVVAALLDELSNFVGCRLAEHGEFSRRALEN 124 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GK+DL+E E LADLI++ETEMQRRL++E +G LS LY W D+LT R+ IEA+LDF++ Sbjct: 125 GKMDLVEVEGLADLIAAETEMQRRLAVEHAAGGLSKLYEGWADRLTRARALIEAELDFAD 184 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E+DV S V +D+ L+ ++S+H++ GEI+R+G K+VI G NAGKSSL NALA Sbjct: 185 EDDVPGSVSDMVWDDMAKLRAELSAHLAGAGFGEIVRDGLKVVIAGAPNAGKSSLMNALA 244 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 +++VAIVTDI GTTRDVL +DL++EGY V++ DTAG+RET++++E+EGIKR AD Sbjct: 245 RREVAIVTDIAGTTRDVLHVDLNIEGYAVRLYDTAGLRETEEVIEREGIKRALRTAAEAD 304 Query: 301 LILLLKEINSKKEISFPKNIDFIF-IGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIK 359 +IL L EI + +I FP +F +GTK+D++ YD ISS TG GL EL + Sbjct: 305 VILSLAEIGTGAQIDFPGFGGRVFRVGTKADIHPADETGYDLCISSSTGAGLAELHQLLV 364 Query: 360 SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKI 419 L + L ++PS RH L++++ L A ++ GLDI AE LR A SLG+I Sbjct: 365 EDLQERTASLSLALPSRLRHRTLLAESLEALTQA-VSATSVGLDIRAEYLRQAGHSLGRI 423 Query: 420 TGCVDVEQLLDIIFSKFCIGK 440 TG VDVE LLD+IFS+FCIGK Sbjct: 424 TGRVDVEDLLDVIFSEFCIGK 444 >gi|227823856|ref|YP_002827829.1| tRNA modification GTPase TrmE [Sinorhizobium fredii NGR234] gi|227342858|gb|ACP27076.1| tRNA modification GTPase TrmE [Sinorhizobium fredii NGR234] Length = 439 Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust. Identities = 223/439 (50%), Positives = 298/439 (67%), Gaps = 8/439 (1%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI+A+S+GALP+ +++IR+SG + V +C P PR A+LR +G ILD GL Sbjct: 5 DTIYALSSGALPAGVAVIRISGSATAAVIGRLCGAL-PKPRTAALRTIRTRNGEILDSGL 63 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 +I FP+P SFTGED E VHGG AVV+ IL+ LA LR A GEFSRRAF+NGK+DL Sbjct: 64 VIYFPAPASFTGEDCCELQVHGGRAVVHAILDTLAGFERLRHAEAGEFSRRAFQNGKMDL 123 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +E E LADLIS+ETEMQRRL++E G S+LY W +LTH R+ IEA+LDF++E+D+ Sbjct: 124 VEVEGLADLISAETEMQRRLAVEQAGGGQSALYQGWSRRLTHARAMIEAELDFADEDDIP 183 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S+ + DI L+ +I +H+ + L EIIR+G KIVI G NAGKSSL NALAK+D+A Sbjct: 184 GSVSEMIWADIETLQAEIDAHVDRAGLAEIIRDGLKIVIAGAPNAGKSSLLNALAKRDIA 243 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVT+I GTTRDVL++DL L G+ VK+ DTAG+RETD++VE+EGI+R + +ADLILLL Sbjct: 244 IVTEIAGTTRDVLSVDLSLAGFSVKLFDTAGLRETDELVEREGIRRAREAIGHADLILLL 303 Query: 306 KEINSKKEISFP--KNIDFIFIGTKSDLYSTYTE--EYDHLISSFTGEGLEELINKIKSI 361 E P N+ I + TK D + + D +S+ TG+G+ +L+ K+K+ Sbjct: 304 SENPDGFAWEEPIGDNVPVIRVATKIDRSEAHWAPGQADLFLSTKTGDGITDLLEKLKAQ 363 Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITG 421 L + + +IPS KRH+ L Q L + + GLDI AE LRLAS +LG+ITG Sbjct: 364 LPDLAGRTSLAIPSRKRHVDCLKQARTALARSLAVD---GLDIQAEQLRLASDALGRITG 420 Query: 422 CVDVEQLLDIIFSKFCIGK 440 VDVE LLD+IFS+FCIGK Sbjct: 421 RVDVENLLDVIFSEFCIGK 439 >gi|161621425|ref|NP_387444.2| tRNA modification GTPase TrmE [Sinorhizobium meliloti 1021] gi|307302553|ref|ZP_07582310.1| tRNA modification GTPase TrmE [Sinorhizobium meliloti BL225C] gi|307316116|ref|ZP_07595560.1| tRNA modification GTPase TrmE [Sinorhizobium meliloti AK83] gi|205422307|sp|Q92KW1|MNME_RHIME RecName: Full=tRNA modification GTPase mnmE gi|187904240|emb|CAC47917.2| Probable thiophene and furan oxidation protein [Sinorhizobium meliloti 1021] gi|306897956|gb|EFN28698.1| tRNA modification GTPase TrmE [Sinorhizobium meliloti AK83] gi|306903223|gb|EFN33813.1| tRNA modification GTPase TrmE [Sinorhizobium meliloti BL225C] Length = 439 Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust. Identities = 218/439 (49%), Positives = 296/439 (67%), Gaps = 8/439 (1%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI+A+S+G+LP+ ++IIR+SGP +C P PR A+LR +G LD GL Sbjct: 5 DTIYALSSGSLPAGVAIIRVSGPETADALVRLCGTLPP-PRIATLRTIRTRNGETLDSGL 63 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 ++ FP+P SFTGED E VHGG AVV+ IL+ELA LR A GEF+RRAF+NGK+DL Sbjct: 64 VLYFPTPASFTGEDCCELQVHGGRAVVSAILDELAATGGLRHAEAGEFARRAFQNGKLDL 123 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +E E LADLI++ETEMQRRL++E G S+LY W +LTH R+ IEA+LDF++E+DV Sbjct: 124 VEVEGLADLIAAETEMQRRLAIEQSGGGQSALYAGWARRLTHSRAMIEAELDFADEDDVP 183 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S + D+ L+ +I HI++ L EIIR+G KIVI G NAGKSSL NALA++D+A Sbjct: 184 GSVSAVIWEDVGRLRQEIDGHIARAGLAEIIRDGLKIVIAGEPNAGKSSLLNALARRDIA 243 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVT++ GTTRDVL++DL L G+ VK+ DTAG+RETD++VE+EGI+R + +ADL+LLL Sbjct: 244 IVTEVAGTTRDVLSVDLSLAGFSVKLFDTAGLRETDELVEREGIRRARQVIADADLVLLL 303 Query: 306 KEINSKKEIS--FPKNIDFIFIGTKSDLYST--YTEEYDHLISSFTGEGLEELINKIKSI 361 E I P+N+ I + TK D S + D +S+ TGEG+ +L+ ++S Sbjct: 304 SEKPGHFRIDEVLPENVPVIRVATKVDRPSPSWAPSDADIFLSTRTGEGMADLLTALQSH 363 Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITG 421 L + + ++PS KRH+ L Q LE SL D L++ AE LR A +LG+ITG Sbjct: 364 LPDLAGRTALAMPSRKRHVDCLRQASAALER-SLISSD--LELRAEQLRQAGDALGRITG 420 Query: 422 CVDVEQLLDIIFSKFCIGK 440 VDVE LLD+IFS+FCIGK Sbjct: 421 RVDVENLLDVIFSEFCIGK 439 >gi|327191200|gb|EGE58243.1| GTP-binding protein in thiophene and furan oxidation [Rhizobium etli CNPAF512] Length = 437 Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust. Identities = 211/436 (48%), Positives = 299/436 (68%), Gaps = 3/436 (0%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI+A+S+GA PS +S+IR+SGP + + P R AS R + +D GL Sbjct: 4 DTIYALSSGAPPSGVSVIRVSGPLTRDILVHLVGSV-PAARMASYRTIRTRYDQPVDSGL 62 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 ++ FP P SFTGEDSAE +HG AV+ + EL +P +R+A GEFSRRAFENGK+DL Sbjct: 63 VLFFPGPNSFTGEDSAELQIHGSKAVLAALFRELGNIPGVRMAIEGEFSRRAFENGKLDL 122 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +E E LADLI +ETEMQRRL++E +G +S++Y W ++LT R+ IEA+LDF +E+DV Sbjct: 123 VEVEGLADLIGAETEMQRRLAVEQSAGGVSAIYDSWAERLTRARALIEAELDFPDEDDVP 182 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S V D+ L+++I+ H+ GEIIR+G+K+VI G NAGKSSL NALAK++VA Sbjct: 183 GSVSDMVWADMARLRHEIALHLEAASAGEIIRDGFKVVIAGAPNAGKSSLMNALAKREVA 242 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTDI GTTRDVL +DLD++GYLVK+ DTAG+RE +D VE EG++R + + +ADL+LLL Sbjct: 243 IVTDIAGTTRDVLHVDLDIDGYLVKLYDTAGLREAEDRVEIEGVRRARVALRDADLVLLL 302 Query: 306 KEINSK-KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364 +++ + + + +GTK DL T ++ YD IS+ TG+GL EL I +++ Sbjct: 303 VDMSDPIVPADLEQALPHVTVGTKKDLIETGSDRYDLQISTATGDGLPELRQLIGRVVAE 362 Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVD 424 +F L +IPS +RH L++ + L+ A++++ L++ E LRLA+ LG+ITG VD Sbjct: 363 RFGGLSLAIPSRQRHKDSLAKCLAALD-AAISDSAASLELRTEQLRLAAEYLGRITGRVD 421 Query: 425 VEQLLDIIFSKFCIGK 440 VEQLLD+IFS+FCIGK Sbjct: 422 VEQLLDVIFSEFCIGK 437 >gi|209551502|ref|YP_002283419.1| tRNA modification GTPase TrmE [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537258|gb|ACI57193.1| tRNA modification GTPase TrmE [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 437 Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust. Identities = 213/439 (48%), Positives = 296/439 (67%), Gaps = 9/439 (2%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI+A+S+GA PS +S++R+SGP + + P R A R + + +D GL Sbjct: 4 DTIYALSSGATPSGVSVVRISGPLTKDILVGLVGSV-PTARYAVRRTIRNRNNQPIDSGL 62 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 ++ FP P SFTGED AE +HG AV+ + E L ++P +R+A GEFSRRAFENGK+DL Sbjct: 63 VLFFPGPHSFTGEDVAELQLHGSKAVLAALFEALCELPGVRMAVEGEFSRRAFENGKLDL 122 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +E E LADLI +ETEMQRRL++E +G LS +Y W ++LT R+ IEA+LDF +E+DV Sbjct: 123 VEVEGLADLIGAETEMQRRLAVEQSAGGLSLIYDSWAERLTRARALIEAELDFPDEDDVP 182 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S V ++ L+ DI H+S GEIIR+G+K+VI G NAGKSSL NALA++DVA Sbjct: 183 GSVSDMVWAEMERLRQDIGQHLSAASAGEIIRDGFKVVIAGAPNAGKSSLLNALARRDVA 242 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTDI GTTRDVL +DLD++GYLVK+ DTAG+RE DD VE EG++R + + +ADL+LLL Sbjct: 243 IVTDIAGTTRDVLQVDLDIDGYLVKLYDTAGLREADDRVEMEGVRRARVALRDADLVLLL 302 Query: 306 KEINSKKEISFPKNID----FIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSI 361 ++ + P ++D + +GTK DL + YD IS+ TGEGL EL I + Sbjct: 303 VDMTNPL---LPDDLDQAAPHVTVGTKKDLVDVVSGHYDLQISTATGEGLSELRQVIGNS 359 Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITG 421 ++ +F L +IPS +RH L++ + LE+A ++ D L++ E LR+A+ LG+ITG Sbjct: 360 VATRFTGLSMAIPSRQRHKDSLAKCLTALEIA-ISATDVNLELRTEQLRIAADYLGRITG 418 Query: 422 CVDVEQLLDIIFSKFCIGK 440 VDVEQLL +IFS+FCIGK Sbjct: 419 RVDVEQLLGVIFSEFCIGK 437 >gi|190893979|ref|YP_001980521.1| GTP-binding protein in thiophene and furan oxidation [Rhizobium etli CIAT 652] gi|226704784|sp|B3PS53|MNME_RHIE6 RecName: Full=tRNA modification GTPase mnmE gi|190699258|gb|ACE93343.1| GTP-binding protein in thiophene and furan oxidation [Rhizobium etli CIAT 652] Length = 439 Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust. Identities = 212/441 (48%), Positives = 298/441 (67%), Gaps = 3/441 (0%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M +TI+A+S+GA PS +S+IR+SG + F P R AS R + Sbjct: 1 MAMLNDTIYALSSGAPPSGVSVIRVSGTLTRDIL-FQLVGSVPAARTASYRTIRTRYDQP 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D GL++ FP P SFTGED+AE +HG AV+ + EL +P +R+A GEFSRRAFEN Sbjct: 60 VDSGLVLFFPGPNSFTGEDAAELQIHGSKAVLAALFRELGDIPGVRMAMEGEFSRRAFEN 119 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GK+DL+E E LADLI +ETEMQRRL++E +G +S++Y W ++LT R+ IEA+LDF + Sbjct: 120 GKLDLVEVEGLADLIGAETEMQRRLAVEQSAGGVSAIYDSWAERLTRARALIEAELDFPD 179 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E+DV S V D+ L++DI+ H+ GEIIR+G+K+VI G NAGKSSL NALA Sbjct: 180 EDDVPGSVSDMVWADMARLRHDIALHLEAASAGEIIRDGFKVVIAGAPNAGKSSLMNALA 239 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 K++VAIVTDI GTTRDVL +DLD++GYLVK+ DTAG+RE +D VE EG++R + + +AD Sbjct: 240 KREVAIVTDIAGTTRDVLHVDLDIDGYLVKLYDTAGLREAEDRVEIEGVRRARVALRDAD 299 Query: 301 LILLLKEI-NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIK 359 L+LLL ++ N + + + +GTK DL T ++ YD IS+ TGEGL EL + I Sbjct: 300 LVLLLVDMSNPIIPADLEQALPHVTVGTKKDLIETASDRYDLQISTTTGEGLPELRDLIG 359 Query: 360 SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKI 419 ++ ++ +IPS +RH L++ + L+ A++++ L++ E LRLA+ LG+I Sbjct: 360 RVVKERYGGQSLAIPSRQRHKDSLAKCLAALD-AAISQGSANLELRTEQLRLAAEYLGRI 418 Query: 420 TGCVDVEQLLDIIFSKFCIGK 440 TG VDVEQLLD+IFS+FCIGK Sbjct: 419 TGRVDVEQLLDVIFSEFCIGK 439 >gi|116254463|ref|YP_770301.1| tRNA modification GTPase TrmE [Rhizobium leguminosarum bv. viciae 3841] gi|205415801|sp|Q1MA18|MNME_RHIL3 RecName: Full=tRNA modification GTPase mnmE gi|115259111|emb|CAK10222.1| putative tRNA modification GTPase [Rhizobium leguminosarum bv. viciae 3841] Length = 439 Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust. Identities = 210/444 (47%), Positives = 297/444 (66%), Gaps = 9/444 (2%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M +TI+A+S+GA PS +S++R+SGP + + P R S R + + Sbjct: 1 MAMLSDTIYALSSGAPPSGVSVVRVSGPLTRDILVKLVGSV-PAARHVSHRTIRTRNNQP 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D GL++ FP+P SFTGED AE +HG AV+ + L +P +R+A GEFSRRAFEN Sbjct: 60 IDSGLVLFFPAPNSFTGEDVAELQIHGSRAVLAALFHALGDIPGVRMAVEGEFSRRAFEN 119 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GK+DL+E E LADLI +ETEMQRRL++E +G LS++Y W ++LT R+ +EA+LDF E Sbjct: 120 GKLDLVEVEGLADLIGAETEMQRRLAVEHSAGGLSAIYDSWAERLTRARALVEAELDFPE 179 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E+DV S V D+ L++DI H++ GEIIR+G+K+VI G NAGKSSL NALA Sbjct: 180 EDDVPGSVSDAVWADMAKLRSDIGDHLAAASAGEIIRDGFKVVIAGAPNAGKSSLLNALA 239 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++DVAIVT+I GTTRDVL +DLD++GYL+K+ DTAG+RE DD VE EG++R + + +AD Sbjct: 240 RRDVAIVTEIAGTTRDVLQVDLDIDGYLIKLFDTAGLREADDKVEMEGVRRARVALRDAD 299 Query: 301 LILLLKEINSKKEISFPKNID----FIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356 L+LLL ++ P +++ + +GTK DL + YD IS+ TG+GL EL Sbjct: 300 LVLLLVDMTKPL---IPDDLEQSSPHVTVGTKKDLTEVNSGRYDLQISTATGDGLPELRR 356 Query: 357 KIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSL 416 I I+ +F L +IPS +RH L++ + L++A L++ D L++ E LR+A+ L Sbjct: 357 LIGDIVERRFAGLSMAIPSRQRHKDSLAKCLAALDVA-LSQTDVNLELRTEQLRIAAEYL 415 Query: 417 GKITGCVDVEQLLDIIFSKFCIGK 440 G+ITG VDVEQLL +IFS+FCIGK Sbjct: 416 GRITGRVDVEQLLGVIFSEFCIGK 439 >gi|15890077|ref|NP_355758.1| tRNA modification GTPase TrmE [Agrobacterium tumefaciens str. C58] gi|205829053|sp|A9CHB2|MNME_AGRT5 RecName: Full=tRNA modification GTPase mnmE gi|15158062|gb|AAK88543.1| tRNA modification GTPase [Agrobacterium tumefaciens str. C58] Length = 442 Score = 409 bits (1051), Expect = e-112, Method: Compositional matrix adjust. Identities = 213/443 (48%), Positives = 302/443 (68%), Gaps = 4/443 (0%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M +TI+A+S+GALP+ +++IR+SG F + + P PR ASL + I Sbjct: 1 MPDSADTIYALSSGALPAGVAVIRISGAKAFIALRALTGRDLPLPRTASLCSIRNRNNEI 60 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+ L+IVFP+P SFTGE+ E H HG AV+ I EL + LR A+ GEFSRRAFEN Sbjct: 61 IDQSLVIVFPAPNSFTGENCVEIHSHGSRAVMASIFAELDNLGGLRPADAGEFSRRAFEN 120 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GK+DLLE E LADL+ +ETEMQRRL++E SG+LS+LY W ++LT R+ IEA+LDF++ Sbjct: 121 GKMDLLEVEGLADLLQAETEMQRRLAVEQSSGQLSALYDGWANRLTRARALIEAELDFAD 180 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EEDV + + +V + LK +I++H+ G GEIIR+G+K+ ++G NAGKS+L NAL+ Sbjct: 181 EEDVPDSVATQVWEAMAALKGEINAHLQGGGNGEIIRDGFKVALVGEPNAGKSTLLNALS 240 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++VAIVTDI GTTRDVL++D++L+GYLV+I DTAGIRET D+VE+EG++R L E AD Sbjct: 241 GREVAIVTDIAGTTRDVLSVDINLDGYLVRIFDTAGIRETQDVVEREGVRRAVLTAETAD 300 Query: 301 LILLLKEINS--KKEISFPKNIDFIFIGTKSDLYSTYT-EEYDHLISSFTGEGLEELINK 357 LIL+L++ +S K+ I N + + TK+ L S + +++D IS+ G GL+EL Sbjct: 301 LILILQDNDSTPKQSIGSFDNQRSLRVRTKTLLRSRASDDDFDLSISAKEGIGLDELRRA 360 Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLG 417 +K + + +P+ RH L +T+ Y+ A L+ + L I +E LRLA+ SLG Sbjct: 361 LKREIEKRVGSGQTLVPARARHKKRLEETLNYVSDA-LDSETLDLAIRSEYLRLAATSLG 419 Query: 418 KITGCVDVEQLLDIIFSKFCIGK 440 +ITG VDVE LL +IFS+FCIGK Sbjct: 420 RITGRVDVEDLLGVIFSEFCIGK 442 >gi|325294202|ref|YP_004280066.1| tRNA modification GTPase TrmE [Agrobacterium sp. H13-3] gi|325062055|gb|ADY65746.1| tRNA modification GTPase TrmE [Agrobacterium sp. H13-3] Length = 443 Score = 409 bits (1050), Expect = e-112, Method: Compositional matrix adjust. Identities = 214/443 (48%), Positives = 303/443 (68%), Gaps = 4/443 (0%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M +TI+A+S+GALP+ ++IIR+SGP F+ + ++ P PRKA L + I Sbjct: 2 MPASADTIYALSSGALPAGVAIIRISGPGAFEAFVTLTRRDLPAPRKAVLCSIRNRNNEI 61 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+ L+IVF +P SFTGE+ E H HG AVV I EL + R A+ GEFSRRAFEN Sbjct: 62 IDQALMIVFSAPNSFTGENCIEIHSHGSRAVVASIFAELELLEGFRPADAGEFSRRAFEN 121 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GK+DLLE E LADL+ +ETEMQRRL++E +G+LS+LY W +LT R+ IEA+LDF++ Sbjct: 122 GKMDLLEIEGLADLLQAETEMQRRLAVEQSTGKLSALYDGWAGRLTRARALIEAELDFAD 181 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EEDV + + +V + + L ++I++H+ G EIIR+G+K+ ++G NAGKS+L NAL+ Sbjct: 182 EEDVPDSVAAQVWDAMTQLHSEITNHLQNGGSSEIIRDGFKVALVGEPNAGKSTLLNALS 241 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 +DVAIVTDI GTTRDVL++D++L+GYLV+I DTAGIRET D+VEKEG++R L E AD Sbjct: 242 GRDVAIVTDIAGTTRDVLSVDINLDGYLVRIFDTAGIRETQDVVEKEGVRRAVLTAETAD 301 Query: 301 LILLLKEINS--KKEISFPKNIDFIFIGTKSDLYSTYTEE-YDHLISSFTGEGLEELINK 357 LIL+L++ +S K+ I +N + + TK+ + S+ + +D IS+ G GL+EL Sbjct: 302 LILILQDNDSTLKQSIISLENARHLHLRTKTAISSSTVDAVFDLAISAREGVGLDELRLL 361 Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLG 417 IK + ++ +P+ RH L +T+ Y+ A LN + L I +E LRLA+ SLG Sbjct: 362 IKGEIESRVGVAQTLVPARARHKKRLEETLNYVSDA-LNSETMDLAIRSEYLRLAATSLG 420 Query: 418 KITGCVDVEQLLDIIFSKFCIGK 440 +ITG VDVE LL +IFS+FCIGK Sbjct: 421 RITGRVDVEDLLGVIFSEFCIGK 443 >gi|205422319|sp|Q2K2S0|MNME_RHIEC RecName: Full=tRNA modification GTPase mnmE Length = 437 Score = 405 bits (1040), Expect = e-111, Method: Compositional matrix adjust. Identities = 217/439 (49%), Positives = 299/439 (68%), Gaps = 9/439 (2%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI+A+S+GA PS +SI+R+SGP + + P R AS R + +D GL Sbjct: 4 DTIYALSSGAPPSGVSIVRISGPLTRNILIRLAGSV-PADRSASYRTIRTRNNEPIDNGL 62 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 ++ FP P SFTGED AE +HG AV+ + EL +P +R+AN GEFSRRAFENGK+DL Sbjct: 63 VLFFPGPHSFTGEDVAELQIHGSKAVLAALFFELGDIPGVRMANEGEFSRRAFENGKLDL 122 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +E E LADLIS+ETEMQRRL++E +G +S++Y W +L R+ IEA+LDF +E+DV Sbjct: 123 VEVEGLADLISAETEMQRRLAVEQSAGGVSAIYDSWAKRLIRARALIEAELDFPDEDDVP 182 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S V D+ L++DI H+ GEIIR+G+K+VI G NAGKSSL NALA++DVA Sbjct: 183 GSVSDMVWTDMKRLRDDIGLHLKSASAGEIIRDGFKVVIAGAPNAGKSSLLNALARRDVA 242 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTDI GTTRDVL +DLD++GYLVK+ DTAG+R+ DD VE EG++R + + +ADL LLL Sbjct: 243 IVTDIAGTTRDVLQVDLDIDGYLVKLYDTAGLRQADDRVEMEGVRRARVALRDADLALLL 302 Query: 306 KEINSKKEISFPKNID----FIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSI 361 ++++ P ++D + +GTK DL T + YD IS+ TG+GL EL I I Sbjct: 303 VDMSNPM---IPGDLDQTLPHVTVGTKKDLVETGSGRYDLQISTLTGDGLSELRQLIGRI 359 Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITG 421 ++ +F L +IPS +RH L++ + L+ A+++E D L++ E LRLA+ LG+ITG Sbjct: 360 VAERFTGLSLAIPSRQRHKDSLTKCLAALD-AAISEIDADLELRTEQLRLAAEYLGRITG 418 Query: 422 CVDVEQLLDIIFSKFCIGK 440 VDVEQLLD+IFS+FCIGK Sbjct: 419 RVDVEQLLDVIFSEFCIGK 437 >gi|150398397|ref|YP_001328864.1| tRNA modification GTPase TrmE [Sinorhizobium medicae WSM419] gi|205415806|sp|A6UEE9|MNME_SINMW RecName: Full=tRNA modification GTPase mnmE gi|150029912|gb|ABR62029.1| tRNA modification GTPase TrmE [Sinorhizobium medicae WSM419] Length = 440 Score = 405 bits (1040), Expect = e-111, Method: Compositional matrix adjust. Identities = 213/440 (48%), Positives = 298/440 (67%), Gaps = 9/440 (2%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI+A+S+G+ P+ +++IR+SGP+ +C P R A+LR + ILD GL Sbjct: 5 DTIYALSSGSPPAGVALIRVSGPATADALARLCGPLPP-ARVATLRTIRTRNSDILDSGL 63 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 ++ FP P SFTGED E VHGG AVV+ IL+ELA M LR A GEF+RRAF+NGK+DL Sbjct: 64 VLYFPGPASFTGEDCCELQVHGGRAVVSAILDELAAMDGLRHAEAGEFARRAFQNGKLDL 123 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +E E LADLI++ETEMQRRL++E G S+LY W +LTH R+ IEA+LDF++E+D+ Sbjct: 124 VEVEGLADLIAAETEMQRRLAVEQSGGGQSALYAGWARRLTHARAMIEAELDFADEDDIP 183 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S + DI L+ +I HI++ + EIIR+G KIVI G NAGKSSL NALA++D+A Sbjct: 184 GSVSAAIWTDIGRLREEIDEHIARAGVAEIIRDGLKIVIAGEPNAGKSSLLNALAQRDIA 243 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVT+I GTTRDVL++DL L G+ VK+ DTAG+RETD++VE+EGI+R + +ADL+LLL Sbjct: 244 IVTEIAGTTRDVLSVDLSLAGFSVKLFDTAGLRETDEVVEREGIRRARQVIADADLVLLL 303 Query: 306 KEINSK---KEISFPKNIDFIFIGTKSD--LYSTYTEEYDHLISSFTGEGLEELINKIKS 360 E S E K++ I + TK D + T E D +S+ TGEG+++L+ +++ Sbjct: 304 SEKPSDFRLDEWQPGKSVPVIRVATKVDRPMPRWKTSEADVFLSTRTGEGMDKLLAMLQA 363 Query: 361 ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKIT 420 L + S+PS +RH+ L Q L + S+ ++ L++ AE LR A +LG+IT Sbjct: 364 HLPDLAGNTALSMPSRRRHVDCLRQAGAAL-VRSMEARE--LELQAEQLRQAGDALGRIT 420 Query: 421 GCVDVEQLLDIIFSKFCIGK 440 G VDVE+LLD+IFS+FCIGK Sbjct: 421 GRVDVEKLLDVIFSEFCIGK 440 >gi|86359701|ref|YP_471593.1| tRNA modification GTPase TrmE [Rhizobium etli CFN 42] gi|86283803|gb|ABC92866.1| GTP-binding protein in thiophene and furan oxidation protein [Rhizobium etli CFN 42] Length = 458 Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust. Identities = 217/439 (49%), Positives = 299/439 (68%), Gaps = 9/439 (2%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI+A+S+GA PS +SI+R+SGP + + P R AS R + +D GL Sbjct: 25 DTIYALSSGAPPSGVSIVRISGPLTRNILIRLAGSV-PADRSASYRTIRTRNNEPIDNGL 83 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 ++ FP P SFTGED AE +HG AV+ + EL +P +R+AN GEFSRRAFENGK+DL Sbjct: 84 VLFFPGPHSFTGEDVAELQIHGSKAVLAALFFELGDIPGVRMANEGEFSRRAFENGKLDL 143 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +E E LADLIS+ETEMQRRL++E +G +S++Y W +L R+ IEA+LDF +E+DV Sbjct: 144 VEVEGLADLISAETEMQRRLAVEQSAGGVSAIYDSWAKRLIRARALIEAELDFPDEDDVP 203 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S V D+ L++DI H+ GEIIR+G+K+VI G NAGKSSL NALA++DVA Sbjct: 204 GSVSDMVWTDMKRLRDDIGLHLKSASAGEIIRDGFKVVIAGAPNAGKSSLLNALARRDVA 263 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTDI GTTRDVL +DLD++GYLVK+ DTAG+R+ DD VE EG++R + + +ADL LLL Sbjct: 264 IVTDIAGTTRDVLQVDLDIDGYLVKLYDTAGLRQADDRVEMEGVRRARVALRDADLALLL 323 Query: 306 KEINSKKEISFPKNID----FIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSI 361 ++++ P ++D + +GTK DL T + YD IS+ TG+GL EL I I Sbjct: 324 VDMSNPM---IPGDLDQTLPHVTVGTKKDLVETGSGRYDLQISTLTGDGLSELRQLIGRI 380 Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITG 421 ++ +F L +IPS +RH L++ + L+ A+++E D L++ E LRLA+ LG+ITG Sbjct: 381 VAERFTGLSLAIPSRQRHKDSLTKCLAALD-AAISEIDADLELRTEQLRLAAEYLGRITG 439 Query: 422 CVDVEQLLDIIFSKFCIGK 440 VDVEQLLD+IFS+FCIGK Sbjct: 440 RVDVEQLLDVIFSEFCIGK 458 >gi|161619976|ref|YP_001593863.1| tRNA modification GTPase TrmE [Brucella canis ATCC 23365] gi|205829120|sp|A9M9E5|MNME_BRUC2 RecName: Full=tRNA modification GTPase mnmE gi|161336787|gb|ABX63092.1| tRNA modification GTPase TrmE [Brucella canis ATCC 23365] Length = 442 Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust. Identities = 205/436 (47%), Positives = 297/436 (68%), Gaps = 3/436 (0%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TIFA+S+G LPS +++IR+SGP V E IC+ P PR A+L F +G +D+GL Sbjct: 9 DTIFALSSGRLPSGVAVIRISGPKTRFVYETICQAI-PEPRHAALLTFRSRNGDAIDRGL 67 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 ++ FP+P SFTGED AEFH+HGG AVV +L L ++P R+A GEF+RRAF NGK+DL Sbjct: 68 ILFFPAPHSFTGEDCAEFHLHGGKAVVEKMLAVLGELPGCRIAEAGEFTRRAFANGKMDL 127 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 AE LADLI++ETE QRRL+M+ SG LY +W +L + R+FIEA+LDF++E DV Sbjct: 128 TIAEGLADLIAAETEGQRRLAMQVASGNQRKLYSEWRQRLINARAFIEAELDFADESDVP 187 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S +V + LK++I HI+ GK ++R+G +VI+G NAGKSSL N LA +DVA Sbjct: 188 GSVSMQVWQQLSALKHEIEHHIASGKRAAMLRDGLHVVIVGAPNAGKSSLLNFLAGRDVA 247 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 I++ GTTRD+L + LDL G V ++DTAG+RETD +VEK GI+R + ADL+L L Sbjct: 248 IISKEAGTTRDLLEVKLDLGGIPVYVTDTAGLRETDSVVEKIGIERARARMAEADLVLSL 307 Query: 306 KEINSKKEISFPK-NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364 ++++ ++ K + IGTK+DL + + + + IS+ TG GLE+L++ +++ Sbjct: 308 EDMSGPVSVTVEKIEAETWLIGTKADLGGSASGLWKYHISTMTGSGLEQLLDALQAFAEA 367 Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVD 424 K ++ ++P+ +RH+ L T+ +E A + D L++ AEN+RLAS LG+ITG VD Sbjct: 368 KIGQIEDAVPTRQRHINLLRATIEEIEKA-IEGDDLPLELRAENMRLASQFLGRITGDVD 426 Query: 425 VEQLLDIIFSKFCIGK 440 VE++LD+IFS+FCIGK Sbjct: 427 VEEILDVIFSQFCIGK 442 >gi|17986290|ref|NP_538924.1| tRNA modification GTPase TrmE [Brucella melitensis bv. 1 str. 16M] gi|225626441|ref|ZP_03784480.1| tRNA modification GTPase TrmE [Brucella ceti str. Cudo] gi|225853493|ref|YP_002733726.1| tRNA modification GTPase TrmE [Brucella melitensis ATCC 23457] gi|254707419|ref|ZP_05169247.1| tRNA modification GTPase TrmE [Brucella pinnipedialis M163/99/10] gi|254709039|ref|ZP_05170850.1| tRNA modification GTPase TrmE [Brucella pinnipedialis B2/94] gi|254713535|ref|ZP_05175346.1| tRNA modification GTPase TrmE [Brucella ceti M644/93/1] gi|254716110|ref|ZP_05177921.1| tRNA modification GTPase TrmE [Brucella ceti M13/05/1] gi|256030564|ref|ZP_05444178.1| tRNA modification GTPase TrmE [Brucella pinnipedialis M292/94/1] gi|256045664|ref|ZP_05448542.1| tRNA modification GTPase TrmE [Brucella melitensis bv. 1 str. Rev.1] gi|256112386|ref|ZP_05453307.1| tRNA modification GTPase TrmE [Brucella melitensis bv. 3 str. Ether] gi|256263027|ref|ZP_05465559.1| tRNA modification GTPase mnmE [Brucella melitensis bv. 2 str. 63/9] gi|256370460|ref|YP_003107971.1| tRNA modification GTPase [Brucella microti CCM 4915] gi|260169469|ref|ZP_05756280.1| tRNA modification GTPase TrmE [Brucella sp. F5/99] gi|260562967|ref|ZP_05833453.1| tRNA modification GTPase mnmE [Brucella melitensis bv. 1 str. 16M] gi|261217881|ref|ZP_05932162.1| tRNA modification GTPase mnmE [Brucella ceti M13/05/1] gi|261314904|ref|ZP_05954101.1| tRNA modification GTPase mnmE [Brucella pinnipedialis M163/99/10] gi|261316538|ref|ZP_05955735.1| tRNA modification GTPase mnmE [Brucella pinnipedialis B2/94] gi|261321269|ref|ZP_05960466.1| tRNA modification GTPase mnmE [Brucella ceti M644/93/1] gi|261758996|ref|ZP_06002705.1| tRNA modification GTPase mnmE [Brucella sp. F5/99] gi|265987612|ref|ZP_06100169.1| tRNA modification GTPase mnmE [Brucella pinnipedialis M292/94/1] gi|265992087|ref|ZP_06104644.1| tRNA modification GTPase mnmE [Brucella melitensis bv. 1 str. Rev.1] gi|265993823|ref|ZP_06106380.1| tRNA modification GTPase mnmE [Brucella melitensis bv. 3 str. Ether] gi|81852665|sp|Q8YJS6|MNME_BRUME RecName: Full=tRNA modification GTPase mnmE gi|17981872|gb|AAL51188.1| thiophene and furan oxidation protein thdf [Brucella melitensis bv. 1 str. 16M] gi|225618098|gb|EEH15141.1| tRNA modification GTPase TrmE [Brucella ceti str. Cudo] gi|225641858|gb|ACO01772.1| tRNA modification GTPase TrmE [Brucella melitensis ATCC 23457] gi|256000623|gb|ACU49022.1| tRNA modification GTPase [Brucella microti CCM 4915] gi|260152983|gb|EEW88075.1| tRNA modification GTPase mnmE [Brucella melitensis bv. 1 str. 16M] gi|260922970|gb|EEX89538.1| tRNA modification GTPase mnmE [Brucella ceti M13/05/1] gi|261293959|gb|EEX97455.1| tRNA modification GTPase mnmE [Brucella ceti M644/93/1] gi|261295761|gb|EEX99257.1| tRNA modification GTPase mnmE [Brucella pinnipedialis B2/94] gi|261303930|gb|EEY07427.1| tRNA modification GTPase mnmE [Brucella pinnipedialis M163/99/10] gi|261738980|gb|EEY26976.1| tRNA modification GTPase mnmE [Brucella sp. F5/99] gi|262764804|gb|EEZ10725.1| tRNA modification GTPase mnmE [Brucella melitensis bv. 3 str. Ether] gi|263003153|gb|EEZ15446.1| tRNA modification GTPase mnmE [Brucella melitensis bv. 1 str. Rev.1] gi|263092899|gb|EEZ17074.1| tRNA modification GTPase mnmE [Brucella melitensis bv. 2 str. 63/9] gi|264659809|gb|EEZ30070.1| tRNA modification GTPase mnmE [Brucella pinnipedialis M292/94/1] gi|326410057|gb|ADZ67122.1| tRNA modification GTPase TrmE [Brucella melitensis M28] gi|326539774|gb|ADZ87989.1| tRNA modification GTPase TrmE [Brucella melitensis M5-90] Length = 442 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 205/436 (47%), Positives = 297/436 (68%), Gaps = 3/436 (0%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TIFA+S+G LPS +++IR+SGP V E IC+ P PR A+L F +G +D+GL Sbjct: 9 DTIFALSSGRLPSGVAVIRISGPKTRFVYETICQAI-PEPRHAALLTFRSRNGDAIDRGL 67 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + FP+P SFTGED AEFH+HGG AVV +L L ++P R+A GEF+RRAF NGK+DL Sbjct: 68 TLFFPAPHSFTGEDCAEFHLHGGKAVVEKMLAVLGELPGCRIAEAGEFTRRAFANGKMDL 127 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 AE LADLI++ETE QRRL+M+ SG LY +W +L + R+FIEA+LDF++E DV Sbjct: 128 TIAEGLADLIAAETEGQRRLAMQVASGNQRKLYSEWRQRLINARAFIEAELDFADESDVP 187 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S +V + LK++I HI+ GK ++R+G +VI+G NAGKSSL N LA +DVA Sbjct: 188 GSVSMQVWQQLSALKHEIEHHIASGKRAAMLRDGLHVVIVGAPNAGKSSLLNFLAGRDVA 247 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 I+++ GTTRD+L + LDL G V ++DTAG+RETD +VEK GI+R + ADL+L L Sbjct: 248 IISEEAGTTRDLLEVKLDLGGIPVYVTDTAGLRETDSVVEKIGIERARARMAEADLVLSL 307 Query: 306 KEINSKKEISFPK-NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364 ++++ ++ K + IGTK+DL + + + + IS+ TG GLE+L++ +++ Sbjct: 308 EDMSGPVSVTVEKIEAETWLIGTKADLGGSASGLWKYHISTMTGSGLEQLLDALQAFAEA 367 Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVD 424 K ++ ++P+ +RH+ L T+ +E A + D L++ AEN+RLAS LG+ITG VD Sbjct: 368 KIGQIEDAVPTRQRHINLLRATIEEIEKA-IEGDDLPLELRAENMRLASQFLGRITGDVD 426 Query: 425 VEQLLDIIFSKFCIGK 440 VE++LD+IFS+FCIGK Sbjct: 427 VEEILDVIFSQFCIGK 442 >gi|256158560|ref|ZP_05456450.1| tRNA modification GTPase TrmE [Brucella ceti M490/95/1] gi|256253969|ref|ZP_05459505.1| tRNA modification GTPase TrmE [Brucella ceti B1/94] gi|261221111|ref|ZP_05935392.1| tRNA modification GTPase mnmE [Brucella ceti B1/94] gi|265997072|ref|ZP_06109629.1| tRNA modification GTPase mnmE [Brucella ceti M490/95/1] gi|260919695|gb|EEX86348.1| tRNA modification GTPase mnmE [Brucella ceti B1/94] gi|262551540|gb|EEZ07530.1| tRNA modification GTPase mnmE [Brucella ceti M490/95/1] Length = 442 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 205/436 (47%), Positives = 297/436 (68%), Gaps = 3/436 (0%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TIFA+S+G LPS +++IR+SGP V E IC+ P PR A+L F +G +D+GL Sbjct: 9 DTIFALSSGRLPSGVAVIRISGPKTRFVYETICQAI-PEPRHAALLTFRSRNGDAIDRGL 67 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + FP+P SFTGED AEFH+HGG AVV +L L ++P R+A GEF+RRAF NGK+DL Sbjct: 68 TLFFPAPHSFTGEDCAEFHLHGGKAVVEKMLAVLGELPGCRIAEAGEFTRRAFANGKMDL 127 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 AE LADLI++ETE QRRL+M+ SG LY +W +L + R+FIEA+LDF++E DV Sbjct: 128 TIAEGLADLIAAETEGQRRLAMQVASGNQCKLYSEWRQRLINARAFIEAELDFADESDVP 187 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S +V + LK++I HI+ GK ++R+G +VI+G NAGKSSL N LA +DVA Sbjct: 188 GSVSMQVWQQLSALKHEIEHHIASGKRAAMLRDGLHVVIVGAPNAGKSSLLNFLAGRDVA 247 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 I+++ GTTRD+L + LDL G V ++DTAG+RETD +VEK GI+R + ADL+L L Sbjct: 248 IISEEAGTTRDLLEVKLDLGGIPVYVTDTAGLRETDSVVEKIGIERARARMAEADLVLSL 307 Query: 306 KEINSKKEISFPK-NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364 ++++ ++ K + IGTK+DL + + + + IS+ TG GLE+L++ +++ Sbjct: 308 EDMSGPVSVTVEKIEAETWLIGTKADLGGSASGLWKYHISTMTGSGLEQLLDALQAFAEA 367 Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVD 424 K ++ ++P+ +RH+ L T+ +E A + D L++ AEN+RLAS LG+ITG VD Sbjct: 368 KIGQIEDAVPTRQRHINLLRATIEEIEKA-IEGDDLPLELRAENMRLASQFLGRITGDVD 426 Query: 425 VEQLLDIIFSKFCIGK 440 VE++LD+IFS+FCIGK Sbjct: 427 VEEILDVIFSQFCIGK 442 >gi|256060026|ref|ZP_05450208.1| tRNA modification GTPase TrmE [Brucella neotomae 5K33] gi|261324003|ref|ZP_05963200.1| tRNA modification GTPase mnmE [Brucella neotomae 5K33] gi|261299983|gb|EEY03480.1| tRNA modification GTPase mnmE [Brucella neotomae 5K33] Length = 442 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 205/436 (47%), Positives = 297/436 (68%), Gaps = 3/436 (0%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TIFA+S+G LPS +++IR+SGP V E IC+ P PR A+L F +G +D+GL Sbjct: 9 DTIFALSSGRLPSGVAVIRISGPKTRFVYETICQAI-PEPRHAALLTFRSRNGDAIDRGL 67 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + FP+P SFTGED AEFH+HGG AVV +L L ++P R+A GEF+RRAF NGK+DL Sbjct: 68 TLFFPAPHSFTGEDCAEFHLHGGKAVVEKMLAVLGELPGYRIAEAGEFTRRAFANGKMDL 127 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 AE LADLI++ETE QRRL+M+ SG LY +W +L + R+FIEA+LDF++E DV Sbjct: 128 TIAEGLADLIAAETEGQRRLAMQVASGNQRKLYSEWRQRLINARAFIEAELDFADESDVP 187 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S +V + LK++I HI+ GK ++R+G +VI+G NAGKSSL N LA +DVA Sbjct: 188 GSVSMQVWQQLSALKHEIEHHIASGKRAAMLRDGLHVVIVGAPNAGKSSLLNFLAGRDVA 247 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 I+++ GTTRD+L + LDL G V ++DTAG+RETD +VEK GI+R + ADL+L L Sbjct: 248 IISEEAGTTRDLLEVKLDLGGIPVYVTDTAGLRETDSVVEKIGIERARARMAEADLVLSL 307 Query: 306 KEINSKKEISFPK-NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364 ++++ ++ K + IGTK+DL + + + + IS+ TG GLE+L++ +++ Sbjct: 308 EDMSGPVSVTVEKIEAETWLIGTKADLGGSASGLWKYHISTMTGSGLEQLLDALQAFAEA 367 Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVD 424 K ++ ++P+ +RH+ L T+ +E A + D L++ AEN+RLAS LG+ITG VD Sbjct: 368 KIGQIEDAVPTRQRHINLLRATIEEIEKA-IEGDDLPLELRAENMRLASQFLGRITGDVD 426 Query: 425 VEQLLDIIFSKFCIGK 440 VE++LD+IFS+FCIGK Sbjct: 427 VEEILDVIFSQFCIGK 442 >gi|254694684|ref|ZP_05156512.1| tRNA modification GTPase TrmE [Brucella abortus bv. 3 str. Tulya] gi|261215012|ref|ZP_05929293.1| tRNA modification GTPase TrmE [Brucella abortus bv. 3 str. Tulya] gi|260916619|gb|EEX83480.1| tRNA modification GTPase TrmE [Brucella abortus bv. 3 str. Tulya] Length = 442 Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust. Identities = 204/436 (46%), Positives = 297/436 (68%), Gaps = 3/436 (0%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TIFA+S+G LPS +++IR+SGP V E IC+ P PR A+L F +G +D+GL Sbjct: 9 DTIFALSSGRLPSGVAVIRISGPKTRFVYETICQAI-PEPRHAALLTFRSRNGDAIDRGL 67 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + FP+P SFTGED AEFH+HGG AVV +L L ++P R+A GEF+RRAF NGK+DL Sbjct: 68 TLFFPAPHSFTGEDCAEFHLHGGKAVVEKMLAVLGELPGCRIAEAGEFTRRAFANGKMDL 127 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 AE LADLI++ETE QRRL+M+ SG LY +W +L + R+FIEA+LDF++E DV Sbjct: 128 TIAEGLADLIAAETEGQRRLAMQVASGNQRKLYSEWRQRLINARAFIEAELDFADESDVP 187 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S +V + LK++I HI+ GK ++R+G +VI+G NAGKSSL N LA +DVA Sbjct: 188 GSVSMQVWQQLSALKHEIEHHIASGKRAAMLRDGLHVVIVGAPNAGKSSLLNFLAGRDVA 247 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 I+++ GTTRD+L + LDL G V ++DTAG+RETD +VEK GI+R + ADL+L L Sbjct: 248 IISEEAGTTRDLLEVKLDLGGIPVYVTDTAGLRETDSVVEKIGIERARARMAEADLVLSL 307 Query: 306 KEINSKKEISFPK-NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364 ++++ ++ K + IGTK+DL + + + + IS+ TG GLE+L++ +++ Sbjct: 308 EDMSGPVSVTVEKIEAETWLIGTKADLGGSASGLWKYHISTMTGSGLEQLLDALQAFAEA 367 Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVD 424 K ++ ++P+ +RH+ L T+ +E A + D L++ AEN+RLAS LG+ITG VD Sbjct: 368 KIGQIEDAVPTRQRHINLLRATIEEIEKA-IESDDLPLELRAENMRLASQFLGRITGDVD 426 Query: 425 VEQLLDIIFSKFCIGK 440 VE++LD++FS+FCIGK Sbjct: 427 VEEILDVMFSQFCIGK 442 >gi|23502910|ref|NP_699037.1| tRNA modification GTPase TrmE [Brucella suis 1330] gi|254705063|ref|ZP_05166891.1| tRNA modification GTPase TrmE [Brucella suis bv. 3 str. 686] gi|260567467|ref|ZP_05837937.1| tRNA modification GTPase mnmE [Brucella suis bv. 4 str. 40] gi|261755767|ref|ZP_05999476.1| tRNA modification GTPase mnmE [Brucella suis bv. 3 str. 686] gi|81741537|sp|Q8CY34|MNME_BRUSU RecName: Full=tRNA modification GTPase mnmE gi|23348942|gb|AAN30952.1| tRNA modification GTPase TrmE [Brucella suis 1330] gi|260156985|gb|EEW92065.1| tRNA modification GTPase mnmE [Brucella suis bv. 4 str. 40] gi|261745520|gb|EEY33446.1| tRNA modification GTPase mnmE [Brucella suis bv. 3 str. 686] Length = 442 Score = 399 bits (1024), Expect = e-109, Method: Compositional matrix adjust. Identities = 205/436 (47%), Positives = 296/436 (67%), Gaps = 3/436 (0%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TIFA+S+G LPS +++IR+SGP V E IC+ P PR A+L F +G +D+GL Sbjct: 9 DTIFALSSGRLPSGVAVIRISGPKTRFVYETICQAI-PEPRHAALLTFRSRNGDAIDRGL 67 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + FP+P SFTGED AEFH+HGG AVV +L L ++P R+A GEF+RRAF NGK+DL Sbjct: 68 TLFFPAPHSFTGEDCAEFHLHGGKAVVEKMLAVLGELPGCRIAEAGEFTRRAFANGKMDL 127 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 AE LADLI++ETE QRRL+M+ SG LY +W +L + R+FIEA+LDF++E DV Sbjct: 128 TIAEGLADLIAAETEGQRRLAMQVASGNQRKLYSEWRQRLINARAFIEAELDFADESDVP 187 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S +V + LK++I HI+ GK ++R+G +VI+G NAGKSSL N LA +DVA Sbjct: 188 GSVSMQVWQQLSALKHEIEHHIASGKRAAMLRDGLHVVIVGAPNAGKSSLLNFLAGRDVA 247 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 I++ GTTRD+L + LDL G V ++DTAG+RETD +VEK GI+R + ADL+L L Sbjct: 248 IISKEAGTTRDLLEVKLDLGGIPVYVTDTAGLRETDSVVEKIGIERARARMAEADLVLSL 307 Query: 306 KEINSKKEISFPK-NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364 ++++ ++ K + IGTK+DL + + + + IS+ TG GLE+L++ +++ Sbjct: 308 EDMSGPVSVTVEKIEAETWLIGTKADLGGSASGLWKYHISTMTGSGLEQLLDALQAFAEA 367 Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVD 424 K ++ ++P+ +RH+ L T+ +E A + D L++ AEN+RLAS LG+ITG VD Sbjct: 368 KIGQIEDAVPTRQRHINLLRATIEEIEKA-IEGDDLPLELRAENMRLASQFLGRITGDVD 426 Query: 425 VEQLLDIIFSKFCIGK 440 VE++LD+IFS+FCIGK Sbjct: 427 VEEILDVIFSQFCIGK 442 >gi|62290906|ref|YP_222699.1| tRNA modification GTPase TrmE [Brucella abortus bv. 1 str. 9-941] gi|82700817|ref|YP_415391.1| tRNA modification GTPase TrmE [Brucella melitensis biovar Abortus 2308] gi|189025119|ref|YP_001935887.1| tRNA modification GTPase TrmE [Brucella abortus S19] gi|237816411|ref|ZP_04595404.1| tRNA modification GTPase TrmE [Brucella abortus str. 2308 A] gi|254690194|ref|ZP_05153448.1| tRNA modification GTPase TrmE [Brucella abortus bv. 6 str. 870] gi|254696311|ref|ZP_05158139.1| tRNA modification GTPase TrmE [Brucella abortus bv. 2 str. 86/8/59] gi|254731227|ref|ZP_05189805.1| tRNA modification GTPase TrmE [Brucella abortus bv. 4 str. 292] gi|256258448|ref|ZP_05463984.1| tRNA modification GTPase TrmE [Brucella abortus bv. 9 str. C68] gi|260546168|ref|ZP_05821908.1| tRNA modification GTPase mnmE [Brucella abortus NCTC 8038] gi|260755735|ref|ZP_05868083.1| tRNA modification GTPase TrmE [Brucella abortus bv. 6 str. 870] gi|260758959|ref|ZP_05871307.1| tRNA modification GTPase TrmE [Brucella abortus bv. 4 str. 292] gi|260760683|ref|ZP_05873026.1| tRNA modification GTPase TrmE [Brucella abortus bv. 2 str. 86/8/59] gi|260884761|ref|ZP_05896375.1| tRNA modification GTPase mnmE [Brucella abortus bv. 9 str. C68] gi|297247290|ref|ZP_06931008.1| tRNA modification GTPase TrmE [Brucella abortus bv. 5 str. B3196] gi|75496086|sp|Q57AJ6|MNME_BRUAB RecName: Full=tRNA modification GTPase mnmE gi|123547323|sp|Q2YR11|MNME_BRUA2 RecName: Full=tRNA modification GTPase mnmE gi|62197038|gb|AAX75338.1| TrmE, tRNA modification GTPase [Brucella abortus bv. 1 str. 9-941] gi|82616918|emb|CAJ12019.1| ATP/GTP-binding site motif A (P-loop):Ras GTPase superfamily:tRNA modification GTPase TrmE:Small GTP-binding protein domain:G [Brucella melitensis biovar Abortus 2308] gi|189020691|gb|ACD73413.1| tRNA modification GTPase [Brucella abortus S19] gi|237788478|gb|EEP62693.1| tRNA modification GTPase TrmE [Brucella abortus str. 2308 A] gi|260096275|gb|EEW80151.1| tRNA modification GTPase mnmE [Brucella abortus NCTC 8038] gi|260669277|gb|EEX56217.1| tRNA modification GTPase TrmE [Brucella abortus bv. 4 str. 292] gi|260671115|gb|EEX57936.1| tRNA modification GTPase TrmE [Brucella abortus bv. 2 str. 86/8/59] gi|260675843|gb|EEX62664.1| tRNA modification GTPase TrmE [Brucella abortus bv. 6 str. 870] gi|260874289|gb|EEX81358.1| tRNA modification GTPase mnmE [Brucella abortus bv. 9 str. C68] gi|297174459|gb|EFH33806.1| tRNA modification GTPase TrmE [Brucella abortus bv. 5 str. B3196] Length = 442 Score = 398 bits (1023), Expect = e-109, Method: Compositional matrix adjust. Identities = 204/436 (46%), Positives = 297/436 (68%), Gaps = 3/436 (0%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TIFA+S+G LPS +++IR+SGP V E IC+ P PR A+L F +G +D+GL Sbjct: 9 DTIFALSSGRLPSGVAVIRISGPKTRFVYETICQAI-PEPRHAALLTFRSRNGDAIDRGL 67 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + FP+P SFTGED AEFH+HGG AVV +L L ++P R+A GEF+RRAF NGK+DL Sbjct: 68 TLFFPAPHSFTGEDCAEFHLHGGKAVVEKMLAVLGELPGCRIAEAGEFTRRAFANGKMDL 127 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 AE LADLI++ETE QRRL+M+ SG LY +W +L + R+FIEA+LDF++E DV Sbjct: 128 TIAEGLADLIAAETEGQRRLAMQVASGNQRKLYSEWRQRLINARAFIEAELDFADESDVP 187 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S +V + LK++I HI+ GK ++R+G +VI+G NAGKSSL N LA +DVA Sbjct: 188 GSVSMQVWQQLSALKHEIEHHIASGKRAAMLRDGLHVVIVGAPNAGKSSLLNFLAGRDVA 247 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 I+++ GTTRD+L + LDL G V ++DTAG+RETD +VEK GI+R + ADL+L L Sbjct: 248 IISEEAGTTRDLLEVKLDLGGIPVYVTDTAGLRETDSVVEKIGIERARARMAEADLVLSL 307 Query: 306 KEINSKKEISFPK-NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364 ++++ ++ K + IGTK+DL + + + + IS+ TG GLE+L++ +++ Sbjct: 308 EDMSGPVSVTVEKIEAETWLIGTKADLGGSASGLWKYHISTMTGSGLEQLLDALQAFAEA 367 Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVD 424 K ++ ++P+ +RH+ L T+ +E A + D L++ AEN+RLAS LG+ITG VD Sbjct: 368 KIGQIEDAVPTRQRHINLLRATIEEIEKA-IEGDDLPLELRAENMRLASQFLGRITGDVD 426 Query: 425 VEQLLDIIFSKFCIGK 440 VE++LD++FS+FCIGK Sbjct: 427 VEEILDVMFSQFCIGK 442 >gi|254700692|ref|ZP_05162520.1| tRNA modification GTPase TrmE [Brucella suis bv. 5 str. 513] gi|261751202|ref|ZP_05994911.1| tRNA modification GTPase mnmE [Brucella suis bv. 5 str. 513] gi|261740955|gb|EEY28881.1| tRNA modification GTPase mnmE [Brucella suis bv. 5 str. 513] Length = 442 Score = 398 bits (1023), Expect = e-109, Method: Compositional matrix adjust. Identities = 205/436 (47%), Positives = 296/436 (67%), Gaps = 3/436 (0%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TIFA+S+G LPS +++IR+SGP V E IC+ P PR A L F +G +D+GL Sbjct: 9 DTIFALSSGRLPSGVAVIRISGPKTRFVYETICQAI-PEPRHAVLLTFRSRNGDAIDRGL 67 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + FP+P SFTGED AEFH+HGG AVV +L L ++P R+A GEF+RRAF NGK+DL Sbjct: 68 TLFFPAPHSFTGEDCAEFHLHGGKAVVEKMLAVLGELPGCRIAEAGEFTRRAFANGKMDL 127 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 AE LADLI++ETE QRRL+M+ SG LY +W +L + R+FIEA+LDF++E DV Sbjct: 128 TIAEGLADLIAAETEGQRRLAMQVASGNQRKLYSEWRQRLINARAFIEAELDFADESDVP 187 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S +V + LK++I HI+ GK ++R+G +VI+G NAGKSSL N LA +DVA Sbjct: 188 GSVSMQVWQQLSALKHEIEHHIASGKRAAMLRDGLHVVIVGAPNAGKSSLLNFLAGRDVA 247 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 I+++ GTTRD+L + LDL G V ++DTAG+RETD +VEK GI+R + ADL+L L Sbjct: 248 IISEEAGTTRDLLEVKLDLGGIPVYVTDTAGLRETDSVVEKIGIERARARMAEADLVLSL 307 Query: 306 KEINSKKEISFPK-NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364 ++++ ++ K + IGTK+DL + + + + IS+ TG GLE+L++ +++ Sbjct: 308 EDMSGPVSVTVEKIEAETWLIGTKADLGGSASGLWKYHISTMTGSGLEQLLDALQAFAEA 367 Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVD 424 K ++ ++P+ +RH+ L T+ +E A + D L++ AEN+RLAS LG+ITG VD Sbjct: 368 KIGQIEDAVPTRQRHINLLRATIEEIEKA-IEGDDLPLELRAENMRLASQFLGRITGDVD 426 Query: 425 VEQLLDIIFSKFCIGK 440 VE++LD+IFS+FCIGK Sbjct: 427 VEEILDVIFSQFCIGK 442 >gi|163844080|ref|YP_001628484.1| tRNA modification GTPase TrmE [Brucella suis ATCC 23445] gi|205829122|sp|B0CJG2|MNME_BRUSI RecName: Full=tRNA modification GTPase mnmE gi|163674803|gb|ABY38914.1| tRNA modification GTPase TrmE [Brucella suis ATCC 23445] Length = 442 Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust. Identities = 204/436 (46%), Positives = 297/436 (68%), Gaps = 3/436 (0%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TIFA+S+G LPS +++IR+SGP V E IC+ P PR A+L F +G +D+GL Sbjct: 9 DTIFALSSGRLPSGVAVIRISGPKTRFVYETICQAI-PEPRHAALLTFRSRNGDAIDRGL 67 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + FP+P +FTGED AEFH+HGG AVV +L L ++P R+A GEF+RRAF NGK+DL Sbjct: 68 TLFFPAPHTFTGEDCAEFHLHGGKAVVEKMLAVLGELPGCRIAEAGEFTRRAFANGKMDL 127 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 AE LADLI++ETE QRRL+M+ SG LY +W +L + R+FIEA+LDF++E DV Sbjct: 128 TIAEGLADLIAAETEGQRRLAMQVASGNQRKLYSEWRQRLINARAFIEAELDFADESDVP 187 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S +V + LK++I HI+ GK ++R+G +VI+G NAGKSSL N LA +DVA Sbjct: 188 GSVSMQVWQQLSALKHEIEYHIASGKRAAMLRDGLHVVIVGAPNAGKSSLLNFLAGRDVA 247 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 I+++ GTTRD+L + LDL G V ++DTAG+RETD +VEK GI+R + ADL+L L Sbjct: 248 IISEEAGTTRDLLEVKLDLGGIPVYVTDTAGLRETDSLVEKIGIERARARMAEADLVLSL 307 Query: 306 KEINSKKEISFPK-NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364 ++++ ++ K + IGTK+DL + + + + IS+ TG GLE+L++ +++ Sbjct: 308 EDMSGPVSVTVEKIEAETWLIGTKADLGGSASGLWKYHISTMTGSGLEQLLDALQAFAEA 367 Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVD 424 K ++ ++P+ +RH+ L T+ +E A + D L++ AEN+RLAS LG+ITG VD Sbjct: 368 KIGQIEDAVPTRQRHINLLRATIEEIEKA-IEGDDLPLELRAENMRLASQFLGRITGDVD 426 Query: 425 VEQLLDIIFSKFCIGK 440 VE++LD+IFS+FCIGK Sbjct: 427 VEEILDVIFSQFCIGK 442 >gi|306843478|ref|ZP_07476079.1| tRNA modification GTPase TrmE [Brucella sp. BO1] gi|306276169|gb|EFM57869.1| tRNA modification GTPase TrmE [Brucella sp. BO1] Length = 442 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 204/436 (46%), Positives = 296/436 (67%), Gaps = 3/436 (0%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TIFA+S+G LPS +++IR+SGP V E IC+ P PR A+L F +G +D+GL Sbjct: 9 DTIFALSSGRLPSGVAVIRISGPKTRFVYETICQAI-PEPRHAALLTFRSRNGDAIDRGL 67 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + FP+P SFTGED AEFH+HGG AVV +L L ++P R+A GEF+RRAF NGK+DL Sbjct: 68 TLFFPAPHSFTGEDCAEFHLHGGKAVVEKMLAVLGELPGCRIAEAGEFTRRAFANGKMDL 127 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 AE LADLI++ETE QRRL+++ SG LY +W +L + R+FIEA+LDF++E DV Sbjct: 128 TIAEGLADLIAAETEGQRRLALQVASGNQRKLYSEWRQRLINARAFIEAELDFADESDVP 187 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S +V + LK++I HI+ GK ++R+G +VI+G NAGKSSL N LA +DVA Sbjct: 188 GSVSMQVWQQLSALKHEIEHHIASGKRAAMLRDGLHVVIVGAPNAGKSSLLNFLAGRDVA 247 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 I+++ GTTRD+L + LDL G V ++DTAG+RETD +VEK GI+R + ADL+L L Sbjct: 248 IISEEAGTTRDLLEVKLDLGGIPVYVTDTAGLRETDSVVEKIGIERARARMAEADLVLSL 307 Query: 306 KEINSKKEISFPK-NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364 ++++ ++ K + IGTK+DL + + + IS+ TG GLE+L++ +++ Sbjct: 308 EDMSGPVPVTVEKIEAETWLIGTKADLGERASGLWKYRISTMTGSGLEQLLDALQAFAEA 367 Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVD 424 K ++ ++P+ +RH+ L T+ +E A + D L++ AEN+RLAS LG+ITG VD Sbjct: 368 KIGQIEDAVPTRQRHINLLRATIEEIEKA-IEGDDLPLELRAENMRLASQFLGRITGDVD 426 Query: 425 VEQLLDIIFSKFCIGK 440 VE++LD+IFS+FCIGK Sbjct: 427 VEEILDVIFSQFCIGK 442 >gi|148559809|ref|YP_001259867.1| tRNA modification GTPase TrmE [Brucella ovis ATCC 25840] gi|294851291|ref|ZP_06791964.1| tRNA modification GTPase TrmE [Brucella sp. NVSL 07-0026] gi|205829121|sp|A5VT20|MNME_BRUO2 RecName: Full=tRNA modification GTPase mnmE gi|148371066|gb|ABQ61045.1| tRNA modification GTPase TrmE [Brucella ovis ATCC 25840] gi|294819880|gb|EFG36879.1| tRNA modification GTPase TrmE [Brucella sp. NVSL 07-0026] Length = 442 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 204/436 (46%), Positives = 297/436 (68%), Gaps = 3/436 (0%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TIFA+S+G LPS +++IR+SGP V E I ++ P PR A+L F +G +D+GL Sbjct: 9 DTIFALSSGRLPSGVAVIRISGPKTRFVYETI-RQAIPEPRHAALLTFRSRNGDAIDRGL 67 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + FP+P SFTGED AEFH+HGG AVV +L L ++P R+A GEF+RRAF NGK+DL Sbjct: 68 TLFFPAPHSFTGEDCAEFHLHGGKAVVEKMLAVLGELPGCRIAEAGEFTRRAFANGKMDL 127 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 AE LADLI++ETE QRRL+M+ SG LY +W +L + R+FIEA+LDF++E DV Sbjct: 128 TIAEGLADLIAAETEGQRRLAMQVASGNQRKLYSEWRQRLINARAFIEAELDFADESDVP 187 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S +V + LK++I HI+ GK ++R+G +VI+G NAGKSSL N LA +DVA Sbjct: 188 GSVSMQVWQQLSALKHEIEHHIASGKRAAMLRDGLHVVIVGAPNAGKSSLLNFLAGRDVA 247 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 I+++ GTTRD+L + LDL G V ++DTAG+RETD +VEK GI+R + ADL+L L Sbjct: 248 IISEEAGTTRDLLEVKLDLGGIPVYVTDTAGLRETDSVVEKIGIERARARMAEADLVLSL 307 Query: 306 KEINSKKEISFPK-NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364 ++++ ++ K + IGTK+DL + + + + IS+ TG GLE+L++ +++ Sbjct: 308 EDMSGPVSVTVEKIEAETWLIGTKADLGGSASGLWKYHISTMTGSGLEQLLDALQAFAEA 367 Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVD 424 K ++ ++P+ +RH+ L T+ +E A + D L++ AEN+RLAS LG+ITG VD Sbjct: 368 KIGQIEDAVPTRQRHINLLRATIEEIEKA-IEGDDLPLELRAENMRLASQFLGRITGDVD 426 Query: 425 VEQLLDIIFSKFCIGK 440 VE++LD+IFS+FCIGK Sbjct: 427 VEEILDVIFSQFCIGK 442 >gi|241206940|ref|YP_002978036.1| tRNA modification GTPase TrmE [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860830|gb|ACS58497.1| tRNA modification GTPase TrmE [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 437 Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust. Identities = 208/436 (47%), Positives = 293/436 (67%), Gaps = 3/436 (0%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI+A+S+GALPS +S++R+SGP + + R AS R + + +D GL Sbjct: 4 DTIYALSSGALPSGVSVVRISGPLTRDILVSLAGSVSA-ARHASHRTIRSRNNQPIDSGL 62 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 ++ FP+P SFTGED AE +HG AV+ + L +P +R+A GEFSRRAFENGK+DL Sbjct: 63 VLFFPAPNSFTGEDVAELQIHGSKAVLAALFHALGDIPGVRMAVEGEFSRRAFENGKLDL 122 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +E E LADLI +ETEMQRRL++E +G LS +Y W ++LT R+ IEA+LDF +E+DV Sbjct: 123 VEVEGLADLIGAETEMQRRLAVEHSAGGLSRIYDSWAERLTRARALIEAELDFPDEDDVP 182 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S V D+ L++DI +H++ GEIIR+G+K+VI G NAGKSSL N LA++DVA Sbjct: 183 GSVSDMVWADMAKLRSDIENHLATASAGEIIRDGFKVVIAGAPNAGKSSLLNTLARRDVA 242 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVT+I GTTRDVL +DLD++GYL+K+ DTAG+RE DD VE EG++R + +ADL+LLL Sbjct: 243 IVTEIAGTTRDVLQVDLDIDGYLIKLYDTAGLREADDRVEMEGVRRARAALRDADLVLLL 302 Query: 306 KEI-NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364 ++ N + + +GTK DL + YD IS+ TG+GL EL I I+ Sbjct: 303 VDMTNPLVPDELEQASPHVIVGTKKDLIGIAEDRYDLQISTTTGDGLPELRRLIGDIIDK 362 Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVD 424 +F L +IPS +RH L++ + L+ A++++ D L++ E LR+A+ LG+ITG VD Sbjct: 363 RFAGLSMAIPSRQRHKDSLAKCLAALD-AAISQTDVNLELRTEQLRIAAEYLGRITGRVD 421 Query: 425 VEQLLDIIFSKFCIGK 440 VEQLL +IFS+FCIGK Sbjct: 422 VEQLLGVIFSEFCIGK 437 >gi|254718104|ref|ZP_05179915.1| tRNA modification GTPase TrmE [Brucella sp. 83/13] gi|265983057|ref|ZP_06095792.1| tRNA modification GTPase mnmE [Brucella sp. 83/13] gi|264661649|gb|EEZ31910.1| tRNA modification GTPase mnmE [Brucella sp. 83/13] Length = 442 Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust. Identities = 203/436 (46%), Positives = 295/436 (67%), Gaps = 3/436 (0%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TIFA+S+G LPS +++IR+SGP V E IC+ P PR A+L F +G +D+ L Sbjct: 9 DTIFALSSGRLPSGVAVIRISGPKTRFVYETICQAI-PEPRHAALLTFRSRNGDAIDRSL 67 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + FP+P SFTGED AEFH+HGG AVV +L L ++P R+A GEF+RRAF NGK+DL Sbjct: 68 TLFFPTPHSFTGEDCAEFHLHGGKAVVEKMLAVLGELPGCRIAEAGEFTRRAFANGKMDL 127 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 AE LADLI++ETE QRRL+++ SG LY +W +L + R+FIEA+LDF++E DV Sbjct: 128 TIAEGLADLIAAETEGQRRLALQVASGNQRKLYSEWRQRLINARAFIEAELDFADESDVP 187 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S +V + LK++I HI+ GK ++R+G +VI+G NAGKSSL N LA +DVA Sbjct: 188 GSVSMQVWRQLSALKHEIEHHIASGKRAAMLRDGLHVVIVGAPNAGKSSLLNFLAGRDVA 247 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 I+++ GTTRD+L + LDL G V ++DTAG+RETD +VEK GI+R + ADL+L L Sbjct: 248 IISEEAGTTRDLLEVKLDLGGIPVYVTDTAGLRETDSVVEKIGIERARARMAEADLVLSL 307 Query: 306 KEINSKKEISFPK-NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364 ++++ ++ K + IGTK+DL + + + IS+ TG GLE+L++ +++ Sbjct: 308 EDMSGPVPVTVEKIEAETWLIGTKADLGGRASGLWKYRISTMTGSGLEQLLDALQAFAEA 367 Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVD 424 K ++ ++P+ +RH+ L T+ +E A + D L++ AEN+RLAS LG+ITG VD Sbjct: 368 KIGQIEDAVPTRQRHINLLRATIEEIEKA-IEGDDLPLELRAENMRLASQFLGRITGDVD 426 Query: 425 VEQLLDIIFSKFCIGK 440 VE++LD+IFS+FCIGK Sbjct: 427 VEEILDVIFSQFCIGK 442 >gi|222150246|ref|YP_002551203.1| tRNA modification GTPase TrmE [Agrobacterium vitis S4] gi|221737228|gb|ACM38191.1| tRNA modification GTPase TrmE [Agrobacterium vitis S4] Length = 436 Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust. Identities = 208/436 (47%), Positives = 292/436 (66%), Gaps = 4/436 (0%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TIFA+STG+LPS +++IRLSGP V +C P PR+A+LR DG ++D+GL Sbjct: 4 DTIFALSTGSLPSGVAVIRLSGPDVQAVLTELCGMV-PAPRQATLRSIRHRDGLVIDRGL 62 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 ++ F P SFTGED E HVHG AVV+ +L LA RLA PGEFSRRAFENGK+DL Sbjct: 63 VLFFSGPSSFTGEDCGELHVHGSRAVVSVLLSTLASFSGCRLAEPGEFSRRAFENGKLDL 122 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +E E LADL+++ETEMQRR ++ SG + +Y W +KL + R+ IEA+LDF++E D+ Sbjct: 123 VEIEGLADLLAAETEMQRRQALAQASGHATGIYESWREKLIYGRAMIEAELDFADEGDIP 182 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S +V + + L+ IS+ I + GEIIR+G+ +VI G NAGKSSL NALA +DVA Sbjct: 183 GSVSDQVWDTVTDLRTQISAAIVDDRRGEIIRDGFNVVIAGPPNAGKSSLINALAGRDVA 242 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVT GTTRD+L D+DLEGY+V++ DTAGIRET++++E+EGI+R +VE ADL+LLL Sbjct: 243 IVTHYAGTTRDILQCDIDLEGYVVRLYDTAGIRETEEVIEQEGIRRALRKVEEADLVLLL 302 Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTE-EYDHLISSFTGEGLEELINKIKSILSN 364 +++S ++ FI IGTK DL S E D +IS++ + ++ + + I + Sbjct: 303 DDVSSPGHTINIVSVPFITIGTKLDLVSASDEIGRDLVISTYVADDVDRVRSVILDSIRK 362 Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVD 424 +F + IPS RH+ L V +++ A L+ + L+I A+ LRLAS SLG++ G +D Sbjct: 363 RFSQNESVIPSRLRHIECLRNAVSFIDQA-LDGR-LSLEIRADFLRLASDSLGRLVGRID 420 Query: 425 VEQLLDIIFSKFCIGK 440 E LL IFS+FC+GK Sbjct: 421 TETLLGKIFSEFCVGK 436 >gi|153008194|ref|YP_001369409.1| tRNA modification GTPase TrmE [Ochrobactrum anthropi ATCC 49188] gi|205415784|sp|A6WX76|MNME_OCHA4 RecName: Full=tRNA modification GTPase mnmE gi|151560082|gb|ABS13580.1| tRNA modification GTPase TrmE [Ochrobactrum anthropi ATCC 49188] Length = 442 Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust. Identities = 199/437 (45%), Positives = 300/437 (68%), Gaps = 3/437 (0%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64 ++TIFA+S+G LPS ++++R+SGP V E I P PR A+ + F +G +D+G Sbjct: 8 QDTIFALSSGRLPSGVAVVRISGPKVRFVLETIVGSI-PTPRYAAYKLFRSRNGDPIDRG 66 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 L + FP P SFTGED AEFH+HGG AVV +L E+ ++ R+A GEF+RRAF NGK+D Sbjct: 67 LALFFPGPNSFTGEDCAEFHLHGGKAVVEKLLSEMGELHGCRIAEAGEFTRRAFSNGKMD 126 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L AE LADLI++ETE QRRL+++ SG LY +W +L R+FIEA+LDF++E DV Sbjct: 127 LTIAEGLADLIAAETEGQRRLALQVASGTQRELYTEWRQRLLRARAFIEAELDFADESDV 186 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 S++V + LK++I +HI+ GK ++R+G +VI+G NAGKSSL N LA ++V Sbjct: 187 PGSVSEQVWQSLALLKSEIENHIASGKRASMLRDGLHVVIVGAPNAGKSSLLNFLAGREV 246 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AI+++ GTTRD+L + LDL G V ++DTAG+RETD VEK GI+R + +ADL+LL Sbjct: 247 AIISEEAGTTRDLLEVKLDLGGIPVYVTDTAGLRETDSSVEKIGIERARARMADADLVLL 306 Query: 305 LKEINSKKEISFPKNIDFIF-IGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363 L+++N ++ + + ++ IGTK+DL + + + + IS+ TGEGL++L+ +++ Sbjct: 307 LEDMNDPIAVASDEIPEALWKIGTKADLNAESADCWTYRISTKTGEGLDQLLTNLQNFAE 366 Query: 364 NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCV 423 + ++ ++P+ +RH+ L TV ++ A +N + L++ AEN+RLAS LG+ITG V Sbjct: 367 EQIGQIEDAVPTRQRHINLLRSTVTEIDRA-INGTNLPLELRAENMRLASQYLGRITGDV 425 Query: 424 DVEQLLDIIFSKFCIGK 440 DVE++LD+IFS+FCIGK Sbjct: 426 DVEEILDVIFSQFCIGK 442 >gi|239833103|ref|ZP_04681432.1| tRNA modification GTPase TrmE [Ochrobactrum intermedium LMG 3301] gi|239825370|gb|EEQ96938.1| tRNA modification GTPase TrmE [Ochrobactrum intermedium LMG 3301] Length = 442 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 200/437 (45%), Positives = 293/437 (67%), Gaps = 3/437 (0%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64 ++TIFA+S+G LPS ++++R+SGP V E I P PR A+ + F +G +D G Sbjct: 8 QDTIFALSSGRLPSGVAVVRISGPRVRFVLETILGVL-PTPRHAAYKLFRARNGDPIDHG 66 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 L++ FP P SFTGED AEFH HGG AVV +L EL ++ R+A GEF+RRAF NGK+D Sbjct: 67 LVLFFPEPNSFTGEDCAEFHAHGGKAVVERLLAELGEIAGCRIAEAGEFTRRAFSNGKMD 126 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L AE LADLI++ETE QRRL+++ SG LY +W +L R+FIEA+LDF++E DV Sbjct: 127 LTIAEGLADLIAAETEGQRRLALQVASGTQRELYTEWRQRLLRARAFIEAELDFADESDV 186 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 S++V + L+ +I SHI+ GK ++R+G +VI+G NAGKSSL N LA ++V Sbjct: 187 PGSVSEQVWQSLALLRTEIESHIASGKRASMLRDGLHVVIVGAPNAGKSSLLNFLAGREV 246 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AI+++ GTTRD+L + LDL G V ++DTAG+RET+ +VEK GI+R + +ADL+LL Sbjct: 247 AIISEEAGTTRDLLEVKLDLGGIPVYVTDTAGLRETESVVEKIGIERARARMADADLVLL 306 Query: 305 LKEINSKKEISFPKNIDFIF-IGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363 L+++N I ++ +GTK+DL + + IS+ TGEGL+ L+ +++ Sbjct: 307 LEDMNDPVAIGTDDTPATLWTVGTKADLSEKTDGGWSYRISTRTGEGLDGLLADLQNFAE 366 Query: 364 NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCV 423 + ++ ++P+ +RH+ L TV ++ A LN + L++ AEN+RLAS LG+ITG V Sbjct: 367 AQIGQIEDAVPTRQRHISLLRSTVVEIDKA-LNGTNVPLELRAENMRLASQYLGRITGDV 425 Query: 424 DVEQLLDIIFSKFCIGK 440 DVE++LD+IFS+FCIGK Sbjct: 426 DVEEILDVIFSQFCIGK 442 >gi|306839729|ref|ZP_07472531.1| tRNA modification GTPase TrmE [Brucella sp. NF 2653] gi|306405189|gb|EFM61466.1| tRNA modification GTPase TrmE [Brucella sp. NF 2653] Length = 424 Score = 381 bits (979), Expect = e-104, Method: Compositional matrix adjust. Identities = 196/426 (46%), Positives = 286/426 (67%), Gaps = 3/426 (0%) Query: 16 LPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESF 75 +PS +++IR+SGP V E IC+ P PR A+L F +G +D+ L + FP+P SF Sbjct: 1 MPSGVAVIRISGPKTRFVYETICQAI-PEPRHAALLTFRSRNGDAIDRSLTLFFPTPHSF 59 Query: 76 TGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLI 135 TGED AEFH+HGG AVV +L L ++P R+A GEF+RRAF NGK+DL AE LADLI Sbjct: 60 TGEDCAEFHLHGGKAVVEKMLAVLGELPGCRIAEAGEFTRRAFANGKMDLTIAEGLADLI 119 Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195 ++ETE QRRL+++ SG LY +W +L + R+FIEA+LDF++E DV S +V Sbjct: 120 AAETEGQRRLALQVASGNQRKLYSEWRQRLINARAFIEAELDFADESDVPGSVSMQVWRQ 179 Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255 + LK++I HI+ GK ++R+G +VI+G NAGKSSL N LA +DVAI+++ GTTR Sbjct: 180 LSALKHEIEHHIASGKRAAMLRDGLHVVIVGAPNAGKSSLLNFLAGRDVAIISEEAGTTR 239 Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D+L + LDL G V ++DTAG+RETD +VEK GI+R + ADL+L L++++ ++ Sbjct: 240 DLLEVKLDLGGIPVYVTDTAGLRETDSVVEKIGIERARARMAEADLVLSLEDMSGPVPVT 299 Query: 316 FPK-NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374 K + IGTK+DL + + + IS+ TG GLE+L++ +++ K ++ ++P Sbjct: 300 VEKIEAETWLIGTKADLGGRASGLWKYRISTMTGSGLEQLLDALQAFAEAKIGQIEDAVP 359 Query: 375 SHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFS 434 + +RH+ L T+ +E A + D L++ AEN+RLAS LG+ITG VDVE++LD+IFS Sbjct: 360 TRQRHINLLRATIEEIEKA-IEGDDLPLELRAENMRLASQFLGRITGDVDVEEILDVIFS 418 Query: 435 KFCIGK 440 +FCIGK Sbjct: 419 QFCIGK 424 >gi|260467199|ref|ZP_05813376.1| small GTP-binding protein [Mesorhizobium opportunistum WSM2075] gi|259029052|gb|EEW30351.1| small GTP-binding protein [Mesorhizobium opportunistum WSM2075] Length = 443 Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust. Identities = 197/441 (44%), Positives = 286/441 (64%), Gaps = 8/441 (1%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 ++I A+S+G LP+ ++++R+SGP V E I R A+LR F DG +LD GL Sbjct: 5 DSIIALSSGRLPAGVAVLRISGPQTRFVVETIAGGMVK-ARAATLRAFKAPDGTVLDNGL 63 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 ++ FP P SFTGED AEFHVHGG AVV G+L+ +A +R A PGEF+RRAF NGK+DL Sbjct: 64 VVFFPGPASFTGEDVAEFHVHGGRAVVAGMLQTIAGFDGVRHAEPGEFTRRAFLNGKVDL 123 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +E E+LADL+++ETE QRR ++ G S LY W +L H R+ IEA++DF++E+DV Sbjct: 124 VETEALADLVNAETEAQRRFAIRNTEGAQSELYLGWRRRLIHARAMIEAEIDFADEDDVP 183 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S V +D+ + ++I HI+ EIIR+G+++VILG NAGKSSLFNALA++D A Sbjct: 184 GSVSDAVWSDVHVMVDEIDRHIAGFHAAEIIRDGFEVVILGAPNAGKSSLFNALARRDAA 243 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTD PGTTRD+L + LDL G V+++DTAG+R+T VE GI+R + + ADL+L+L Sbjct: 244 IVTDEPGTTRDLLEVALDLGGLRVRLTDTAGLRDTPGKVEAIGIERARAKADRADLLLVL 303 Query: 306 KEINSKKEIS-FPKNIDFIFIGTKSDLY-----STYTEEYDHLISSFTGEGLEELINKIK 359 +++ +I I + +GTK DL + YD +IS G G++ L+ +I Sbjct: 304 EDVADPGDIGPLSAAIPALRVGTKLDLLDAQASAEAARRYDLVISVVNGAGVDALLAEIG 363 Query: 360 SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKI 419 ++ + +PS RH+ L + R+L + +++ G ++ AE LRLA+ LG+I Sbjct: 364 RRAADAAGDVGDVLPSRLRHVELLDEAKRHL-VRAIDSGVAGQELRAEELRLAADRLGRI 422 Query: 420 TGCVDVEQLLDIIFSKFCIGK 440 G +DVE +LD+IFS+FCIGK Sbjct: 423 VGAIDVEDMLDVIFSQFCIGK 443 >gi|110635800|ref|YP_676008.1| tRNA modification GTPase TrmE [Mesorhizobium sp. BNC1] gi|123353087|sp|Q11CN2|MNME_MESSB RecName: Full=tRNA modification GTPase mnmE gi|110286784|gb|ABG64843.1| tRNA modification GTPase trmE [Chelativorans sp. BNC1] Length = 442 Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust. Identities = 205/440 (46%), Positives = 287/440 (65%), Gaps = 9/440 (2%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64 ++TIFA+S+G+LPS I++IR+SG V E + R A L + + +LD+ Sbjct: 8 RDTIFALSSGSLPSGIAVIRISGADTRAVLERMAGGLSE-ARFAKLTSIYSAEREVLDRA 66 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 L + FP+P SFTGED AE H+HGG AVV +L ELA P LR+A GEF++RAF NGK++ Sbjct: 67 LCLFFPAPASFTGEDCAELHLHGGRAVVAAVLNELAAFPGLRMAEAGEFTKRAFLNGKMN 126 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L EAE+L+DLI++ETE QRR ++ S LY W +L H R+ IEA+LDF++E DV Sbjct: 127 LTEAEALSDLIAAETEAQRRFALVNSSDMRKRLYDGWRRRLIHARAMIEAELDFADESDV 186 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + V DI L+ +I H S + EIIR+G++IVILG NAGKSSL NALA++DV Sbjct: 187 PGSAGATVWEDIRRLRQEIVEHASSYRKAEIIRDGFQIVILGAPNAGKSSLLNALARRDV 246 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIVT+ PGTTRD+L + LD++G V ++DTAGIRE VE GI+R+ ADL+LL Sbjct: 247 AIVTEEPGTTRDILEVSLDIDGTKVVLADTAGIREAAGRVEALGIERSLRRANEADLVLL 306 Query: 305 LKEINSKKEISFPKNIDFIFIGTKSDLYS-TYTEEYDHLISSFTGEGLE---ELINKIKS 360 L+++ + P+ I IG K+DL + T Y+ LIS+ TG GL+ ELI++ + Sbjct: 307 LEDVTNPSTPEVPQGKPVITIGNKADLITDTPAASYNCLISAKTGLGLDRLMELISQASA 366 Query: 361 ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKIT 420 SN ++ +P +RH+ L Q LE A ++ ++ GL++ AE LRL+S++LG+I+ Sbjct: 367 GYSNFAGEI---LPFRERHVALLGQAADALE-AGIDGENIGLELRAECLRLSSLALGRIS 422 Query: 421 GCVDVEQLLDIIFSKFCIGK 440 G +DVE LLD IFS FCIGK Sbjct: 423 GEIDVEDLLDAIFSTFCIGK 442 >gi|319780612|ref|YP_004140088.1| small GTP-binding protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166500|gb|ADV10038.1| small GTP-binding protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 443 Score = 367 bits (942), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 200/444 (45%), Positives = 285/444 (64%), Gaps = 14/444 (3%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 ++I A+S+G LP+ +++IR+SGP V E I A R+ DG +LD GL Sbjct: 5 DSIVALSSGRLPAGVAVIRISGPQTRFVVETIAGTMVKDRAAALRRFRAS-DGTLLDTGL 63 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 ++ FP P SFTGED AEFHVHGG AVV +LE + +R A PGEF+RRAF NGK+DL Sbjct: 64 VVFFPGPASFTGEDVAEFHVHGGRAVVAKMLETMTGFDGVRHAEPGEFTRRAFLNGKVDL 123 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +E E+LADL+++ETE QRR +++ G S LY W +L H R+ IEA++DF++EEDV Sbjct: 124 VETEALADLVNAETEAQRRFAVQNADGVQSELYLGWRRRLIHARAMIEAEIDFADEEDVP 183 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S V +D+ + ++I HI+ + EIIR+G+++VILG NAGKSSLFNALA++D A Sbjct: 184 GSVSDAVWSDVRTMIDEIDRHIAGFRAAEIIRDGFEVVILGAPNAGKSSLFNALARRDAA 243 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTD PGTTRD+L + LDL+G V+++DTAG+R+ VE GI++ + ADL+LLL Sbjct: 244 IVTDEPGTTRDLLEVTLDLQGLRVRLTDTAGLRDAPGKVEAIGIEKARAKAHGADLLLLL 303 Query: 306 KEINSKKEIS-FPKNIDFIFIGTKSDL-----YSTYTEEYDHLISSFTGEGLEELINKIK 359 ++ +++ P + +GTK DL T +YD +IS G G+EEL+ +I Sbjct: 304 HDMAKPRDVGELPTVAPTLLVGTKLDLIDGRAVPDATADYDLVISVEEGTGVEELLAEIG 363 Query: 360 SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS---LNEKDCGLDIIAENLRLASVSL 416 S + +PS RH+ L +T R+L A+ +NE+ ++ AE LRLA+ L Sbjct: 364 RRASESAGSVGDVLPSRLRHVELLGETNRHLHRATDGRMNEQ----ELRAEELRLAADRL 419 Query: 417 GKITGCVDVEQLLDIIFSKFCIGK 440 G+I G +DVE +LD+IFS+FCIGK Sbjct: 420 GRIVGAIDVEDMLDVIFSQFCIGK 443 >gi|49476318|ref|YP_034359.1| tRNA modification GTPase TrmE [Bartonella henselae str. Houston-1] gi|81647466|sp|Q6G1K8|MNME_BARHE RecName: Full=tRNA modification GTPase mnmE gi|49239126|emb|CAF28430.1| Thiophene and furan oxidizer [Bartonella henselae str. Houston-1] Length = 435 Score = 366 bits (940), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 204/438 (46%), Positives = 279/438 (63%), Gaps = 7/438 (1%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRY--FFGLDGRILDK 63 +TIFAVS+G LPS +++IRLSG V +C P+ + Y DG LD Sbjct: 2 DTIFAVSSGLLPSGVAVIRLSGSHVVHVVTTLCG---CLPKARFMHYGNLTARDGSFLDS 58 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 L + FP+P SFTGED AEFH+HGG AVVN L+EL+ R+A PGEFSRRAF GK+ Sbjct: 59 ALTVFFPAPHSFTGEDCAEFHLHGGKAVVNRFLDELSTFKGCRIAEPGEFSRRAFMEGKL 118 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL++AE LADLI +ETE QRRL++ G SG L++LY W KL IR+FIEA+LDFS+E D Sbjct: 119 DLVQAEGLADLIEAETESQRRLAVMGTSGRLTTLYRDWRHKLMKIRAFIEAELDFSDEAD 178 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 + N S +V D+ L + HI++G+ I+R+G+KIVI+G N+GKSS+ N LA K Sbjct: 179 IPNTVSDKVWKDVENLCISLREHIAEGERASILRDGFKIVIVGAPNSGKSSIMNRLAGKP 238 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303 VAIVT+ GTTRD L + L L G V + DTAG RETD+ +E+ GI+ V +ADL++ Sbjct: 239 VAIVTEEAGTTRDALEVRLVLGGLPVFLIDTAGFRETDNKIEQLGIEVAKQHVRDADLVI 298 Query: 304 LLKEINSKKEISFPKNIDFIF-IGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362 L+ ++ + KE+ P+ I+ +G K DLY E + S+ TG + + +++S Sbjct: 299 LVYDMQNPKEVYLPETSAEIWRVGNKFDLYEENKEPWLIQFSALTGLNFDHFMKELESFC 358 Query: 363 SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGC 422 + ++ P+ KR L L + V+ +E S+N L + AE+LR AS LGKITG Sbjct: 359 LRRVSEIGNLFPARKRQLQLLKEAVKEIE-NSVNYDSLDLSLRAEHLRRASDFLGKITGD 417 Query: 423 VDVEQLLDIIFSKFCIGK 440 +DVE LLDIIFS+FCIGK Sbjct: 418 IDVEDLLDIIFSEFCIGK 435 >gi|49474829|ref|YP_032871.1| tRNA modification GTPase TrmE [Bartonella quintana str. Toulouse] gi|81827572|sp|Q6FYB8|MNME_BARQU RecName: Full=tRNA modification GTPase mnmE gi|49240333|emb|CAF26815.1| Thiophene and furan oxidizer [Bartonella quintana str. Toulouse] Length = 436 Score = 365 bits (937), Expect = 7e-99, Method: Compositional matrix adjust. Identities = 208/444 (46%), Positives = 288/444 (64%), Gaps = 18/444 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRILD 62 +TIFAVS+G LPS +++IRLSGP + + +C P KA L ++ L DG LD Sbjct: 2 DTIFAVSSGLLPSGVAVIRLSGPHVINIVKALCGH---LP-KARLMHYGNLTARDGSFLD 57 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 L + FP+P SFTGED AEFH+HG AVVN L+EL+ R A GEFSRRAF GK Sbjct: 58 SALTVFFPAPHSFTGEDCAEFHLHGSKAVVNRFLDELSTFDGCRSAEAGEFSRRAFMEGK 117 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 +DL++AESLADLI +ETE QRRL++ G SG L++LY W ++L R+FIEA+LDFS+E Sbjct: 118 LDLIQAESLADLIEAETESQRRLAVMGTSGRLTTLYRDWRNRLIKARAFIEAELDFSDEA 177 Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 DV + S +V D+ L I HI+QG+ I+R+G KIVI G N+GKSS+ N LA K Sbjct: 178 DVSDLISDKVWEDVEELCISIRDHIAQGERANILRDGLKIVIAGAPNSGKSSIMNRLAGK 237 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 VAIV + GTTRD L I L L G V ++DTAG+RET++ +E+ GI+ + +ADL+ Sbjct: 238 SVAIVMEEAGTTRDALEIRLVLGGLPVFLTDTAGLRETENKIEQLGIEIAKQHIVDADLV 297 Query: 303 LLLKEINSKKEISFPKNIDFIF-IGTKSDLY-----STYTEEYDHLISSFTGEGLEELIN 356 +L+ ++ + KE++ P+ I+ +G K DLY T+T ++ S+ TG + I Sbjct: 298 ILVYDMGNPKEVNLPETSAEIWHVGNKLDLYEEENKKTWTIQF----SALTGLNFDYFIK 353 Query: 357 KIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSL 416 +++S + ++ P+ KR L L + +R +E AS+N + L + AE+LR ASV L Sbjct: 354 ELESFCLRRVSEIGNLFPARKRQLQLLKEAIREIE-ASINYRSLDLSLHAEHLRCASVFL 412 Query: 417 GKITGCVDVEQLLDIIFSKFCIGK 440 GKITG +DVE LLDIIFS+FCIGK Sbjct: 413 GKITGDIDVEDLLDIIFSEFCIGK 436 >gi|163869379|ref|YP_001610635.1| tRNA modification GTPase TrmE [Bartonella tribocorum CIP 105476] gi|205829117|sp|A9IZY1|MNME_BART1 RecName: Full=tRNA modification GTPase mnmE gi|161019082|emb|CAK02640.1| tRNA modification GTPase [Bartonella tribocorum CIP 105476] Length = 435 Score = 360 bits (924), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 197/438 (44%), Positives = 278/438 (63%), Gaps = 7/438 (1%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRY--FFGLDGRILDK 63 +TIFAVS+G LPS +++IRLSGP + + +C P+ + Y DG LD Sbjct: 2 DTIFAVSSGLLPSGVAVIRLSGPHVVHIVKTLCG---CLPKARFMHYGNLIARDGSFLDS 58 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 L + FP+P SFTGED AEFH+HGG AVVN L+EL+ R+A GEFSRRAF GK+ Sbjct: 59 ALTVFFPAPHSFTGEDCAEFHLHGGKAVVNRFLDELSTFSGCRIAEAGEFSRRAFMEGKL 118 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL++AE LADLI +ETE QRRL++ G SG L++LY W KL +R+FIEA+LDF++EED Sbjct: 119 DLVQAEGLADLIEAETESQRRLAVMGTSGHLTTLYRDWRHKLMKVRAFIEAELDFADEED 178 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 + + S ++ D+ L + HI +G+ I+R+G KIVI G N+GKSS+ N LA + Sbjct: 179 IPDTISDKIWKDVEDLCTSLREHIREGERASILRDGLKIVIAGAPNSGKSSIMNRLAGRS 238 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303 VAIVT+ GTTRD L + L L G + ++DTAG R+T++ +E+ GI+ V ADL++ Sbjct: 239 VAIVTEEAGTTRDALEMRLVLGGLPIFLTDTAGFRKTENKIEQLGIEVAKQHVREADLVI 298 Query: 304 LLKEINSKKEISFPKNIDFIF-IGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362 L+ +I + K++ P+ I+ +G K DLY + S+ TG + I K++S Sbjct: 299 LVYDIVNPKQVDLPETSAEIWRVGNKLDLYEKNDPCWSIQFSALTGLNFDCFIKKLESFC 358 Query: 363 SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGC 422 + ++ +P+ KR L L + V+ +E SLN L + AE+LR AS LGKITG Sbjct: 359 HRRASEVGNLVPARKRQLQLLKEAVKEIE-NSLNYHSLDLSLRAEHLRRASDFLGKITGD 417 Query: 423 VDVEQLLDIIFSKFCIGK 440 +DVE LLDIIFS+FC+GK Sbjct: 418 IDVEDLLDIIFSEFCVGK 435 >gi|307211526|gb|EFN87614.1| tRNA modification GTPase mnmE [Harpegnathos saltator] Length = 434 Score = 358 bits (919), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 195/436 (44%), Positives = 275/436 (63%), Gaps = 4/436 (0%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TIFA+S+G LPS +++IRLSG + V + + P PR L F G +LD+GL Sbjct: 2 KTIFALSSGLLPSGVAVIRLSGAAVKDVLQRVAGFV-PEPRMMVLATFRAESGEVLDRGL 60 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 ++ FP+P+SFTGED AEFH+HGG AVV L+EL+ P+ R+A GEFSRRAF GK DL Sbjct: 61 VVYFPAPKSFTGEDCAEFHLHGGKAVVTRFLDELSTFPDCRVAEAGEFSRRAFAEGKFDL 120 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 EAE LADLI +ETE QRRL+M G SG L+ LY W L R+ IEA+LDF++E DV Sbjct: 121 TEAEGLADLIHAETESQRRLAMMGASGALADLYRNWRSTLVQARAMIEAELDFADEGDVP 180 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 + + +++ L + +HI +++R+G KIVI G NAGKSS+ N LA +DVA Sbjct: 181 GSVADRIWDNVSQLHKAVLTHIESAARADVMRDGVKIVIAGAPNAGKSSVINRLAARDVA 240 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVT+ GTTRD L I L L G V ++DTAG+R+T++ +EK GI+ + ADLILLL Sbjct: 241 IVTEEAGTTRDALEIRLVLGGLPVLVTDTAGLRQTENHIEKMGIESAAARIGEADLILLL 300 Query: 306 KEINSKKEISFPKNIDFIF-IGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364 ++++ + + P I+ IG K DL + + +S+ +G G ++ I ++ Sbjct: 301 DDMHNPQLVELPPTEAEIWSIGNKLDLGEGDRKRWPVQLSARSGAGWQDFIGRLTVFCRK 360 Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVD 424 K + +P +RH L + L+ A +E L++ AE+LRLAS +LGKITG +D Sbjct: 361 KTVDMGEIVPVRRRHTELLKRCALALQHALYDE--AALELRAEHLRLASDALGKITGDID 418 Query: 425 VEQLLDIIFSKFCIGK 440 VE LL++IFS+FCIGK Sbjct: 419 VEDLLNVIFSEFCIGK 434 >gi|114705491|ref|ZP_01438394.1| tRNA modification GTPase [Fulvimarina pelagi HTCC2506] gi|114538337|gb|EAU41458.1| tRNA modification GTPase [Fulvimarina pelagi HTCC2506] Length = 474 Score = 355 bits (910), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 203/473 (42%), Positives = 278/473 (58%), Gaps = 40/473 (8%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A+S+GALPS ++++R+SG V P R+ASLR F DG +D G+ Sbjct: 4 DTIAALSSGALPSGVAVVRVSGAKA-NVAMTSLAGAMPPARQASLRTFRSADGVPIDTGI 62 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + F P + TGED AEFH+HGG AVV+ L+ + + ++RLA GEF+RRAFENG+IDL Sbjct: 63 ALFFDGPNTVTGEDIAEFHLHGGRAVVSAFLQAVTHIADIRLAEAGEFTRRAFENGRIDL 122 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 EAE LADL+++ETE QRR + + G LS++Y W+ +LT R+ IEA DF++E+DV Sbjct: 123 TEAEGLADLLAAETEGQRRAAFDQARGALSTVYEGWMKRLTQARAMIEAGFDFADEDDVG 182 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 + V + + +DI +H+ + GEI+R+GYK+ I+G NAGKSSL NALA+++ A Sbjct: 183 ENAGAGVRQAVSEICDDIRAHLQKASRGEILRSGYKVAIVGAPNAGKSSLLNALAEREAA 242 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTD+PGTTRDV+++ LDL G V + DTAGIRET D VE G+ RT + A+L+L L Sbjct: 243 IVTDVPGTTRDVISVTLDLSGVPVVLLDTAGIRETKDKVEAIGVGRTRAAMNEANLVLAL 302 Query: 306 KEINS--------KKEISFPK--------------------NIDFIFIGTKSDLYS---- 333 ++ K +S+ K D + + TK DL S Sbjct: 303 EDPRDAPGPLSRLKGLLSYVKPSLGPVGQALDDEESEEETLERDVLTVRTKVDLASGQKD 362 Query: 334 ----TYTEE--YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV 387 + EE YD IS+ TG G+ EL+ I S+P R L TV Sbjct: 363 PGHGKHLEEGGYDFAISAKTGAGISELMEAISERARTAAGDPASSVPLRVRQRQLLEDTV 422 Query: 388 RYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 R LE LN++D +I AE LR AS LG +TG V VE LLD+IFS+FCIGK Sbjct: 423 RILE-EFLNDRDAPDEIAAETLRRASTRLGALTGAVGVEDLLDVIFSEFCIGK 474 >gi|240851403|ref|YP_002972806.1| tRNA modification GTPase TrmE [Bartonella grahamii as4aup] gi|240268526|gb|ACS52114.1| tRNA modification GTPase TrmE [Bartonella grahamii as4aup] Length = 435 Score = 354 bits (909), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 192/438 (43%), Positives = 279/438 (63%), Gaps = 7/438 (1%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRY--FFGLDGRILDK 63 +TIFAVS+G LPS +++IRLSGP + + +C + P+ + Y DG LD Sbjct: 2 DTIFAVSSGLLPSGVAVIRLSGPHVVNIVKTLCGR---LPKARFMHYGNLTARDGSFLDS 58 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 L + FP+P SFTGED AEFH+HGG AVV+ L+EL+ R+A GEFSRRAF GK+ Sbjct: 59 CLTVFFPAPHSFTGEDCAEFHLHGGKAVVSRFLDELSTFSGCRIAEAGEFSRRAFMEGKL 118 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL++AE LADLI +ETE QRRL++ G SG L++LY W KL R+FIEA+LDF +E D Sbjct: 119 DLVQAEGLADLIEAETESQRRLAVMGTSGHLTTLYRDWRHKLMKARAFIEAELDFVDEAD 178 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 + N S +V D+ + I +I++G+ I+R+G KIVI G N+GKSS+ N L+ + Sbjct: 179 IPNAISDKVWKDVEDICTSIREYITEGERASILRDGLKIVIAGAPNSGKSSIMNRLSGRS 238 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303 VAIVT+ GTTRD L + + L G + ++DTAG R+T++ +E+ GI+ V ADL++ Sbjct: 239 VAIVTEEAGTTRDALEMRIILGGLPIFLTDTAGFRKTENKIEQMGIEVAKQHVREADLVI 298 Query: 304 LLKEINSKKEISFPKNIDFIF-IGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362 L+ +I + +++ P+ I+ +G K DLY + + S+ TG + I +++S Sbjct: 299 LVYDIGNPEQVDLPETSAEIWCVGNKLDLYEKNDQHWSIQFSALTGLNFDYFIKELESFC 358 Query: 363 SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGC 422 ++ ++ +P+ KR L L + V+ +E SLN L + AE+LR AS LGKITG Sbjct: 359 HHRASEIGNIVPARKRQLQLLKEAVKEIEY-SLNYHSLDLSLRAEHLRCASDFLGKITGD 417 Query: 423 VDVEQLLDIIFSKFCIGK 440 +DVE LLDIIFS+FC+GK Sbjct: 418 IDVEDLLDIIFSEFCVGK 435 >gi|254472335|ref|ZP_05085735.1| tRNA modification GTPase TrmE [Pseudovibrio sp. JE062] gi|211958618|gb|EEA93818.1| tRNA modification GTPase TrmE [Pseudovibrio sp. JE062] Length = 449 Score = 352 bits (903), Expect = 8e-95, Method: Compositional matrix adjust. Identities = 193/453 (42%), Positives = 281/453 (62%), Gaps = 17/453 (3%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG-LDGR 59 MN ++ETI+AVS+GALPS +++IRLSGP + + K K P R++ L+ + +DG Sbjct: 1 MNTQQETIYAVSSGALPSGVAVIRLSGPQSGPILRTLIKGKFPVSRESCLKKLWDPVDGS 60 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 +LD L++ F P SFTGED+ E H HGG AVV +L L+ R A GEF+RRAF Sbjct: 61 VLDHALILWFEGPGSFTGEDTVELHCHGGRAVVAAVLRALSTFEKTRPAEQGEFTRRAFH 120 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 N K+DL E E LADLI +ET+ QRR + M G L LY QW + L R+ IEA+LDFS Sbjct: 121 NNKLDLTEVEGLADLIDAETDAQRRQAQRQMDGALGDLYSQWRETLIRSRAMIEAELDFS 180 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 +E+D+ + + E+ ++ L++ I +H+S + GE +R+G ++V+LG NAGKSSL N L Sbjct: 181 DEDDIPDSVADEIWVELAKLRDQIIAHLSDARRGERLRSGLQVVLLGPPNAGKSSLMNKL 240 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 A++DVAIVT GTTRDVL + LDL GY V + DTAGIRE+ ++EKEGI+R + E A Sbjct: 241 AQRDVAIVTPEAGTTRDVLEVHLDLGGYPVTLIDTAGIRESAGMIEKEGIRRALVHAEKA 300 Query: 300 DLILLLKEINSKKEISFPKNI-----DFIFIGTKSDL-----YSTY--TEEYDHLISSFT 347 DLIL N + E P+++ + + TKSDL + ++ TEE + +S Sbjct: 301 DLILWTHAPNVEAE-ELPESLLQSGAEIWRLNTKSDLGPIADHDSFETTEEIN--VSVRE 357 Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAE 407 G+ L++ ++S + + + +RH HL+Q V L+ + + +++ E Sbjct: 358 EGGMNTLLSSLESFAERNIGLIENPLITRERHRSHLTQCVEDLDRG-IQAEGFPIELRGE 416 Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +LR A+ LG+ITG +DVE LLD+IF FC+GK Sbjct: 417 DLRRAADQLGRITGRIDVEDLLDVIFRDFCVGK 449 >gi|304392709|ref|ZP_07374649.1| tRNA modification GTPase TrmE [Ahrensia sp. R2A130] gi|303295339|gb|EFL89699.1| tRNA modification GTPase TrmE [Ahrensia sp. R2A130] Length = 429 Score = 351 bits (900), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 193/439 (43%), Positives = 278/439 (63%), Gaps = 15/439 (3%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TIFA+S+G+LPS +++IRLSGP + + + PRKA+L DGR+LD+ L Sbjct: 2 DTIFALSSGSLPSGVAVIRLSGPGALTTVKALTGRSLQ-PRKATLCRLSSDDGRVLDEAL 60 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 ++ FP P SFTGED AE H HGG A V+ +L EL +LR A PGEFSRRAF NGK+DL Sbjct: 61 VLTFPEPASFTGEDCAELHCHGGCATVDAVLTELVTFDDLRPAEPGEFSRRAFANGKLDL 120 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE L+DLI ++TE QR L++E M G L LY W L +R+F EA +DFS+E DV Sbjct: 121 TQAEGLSDLIVAQTESQRLLALEQMQGGLRELYEGWRKDLIRVRAFFEASIDFSDEGDVP 180 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 + ++ E+ N++ ++ I +H+ + GEIIR+G+++ ++G NAGKSSL NALAK+D+A Sbjct: 181 DEAAAELWNEVAAIRTAIDNHLDDNRSGEIIRDGFRVALIGPPNAGKSSLLNALAKRDIA 240 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IV D GTTRDVL +DL G++V++ DTAG+R T++ VE+EGI+R + ADL+L L Sbjct: 241 IVDDEAGTTRDVLETVIDLGGHMVRLFDTAGMRNTENRVEQEGIRRAEKTADAADLVLWL 300 Query: 306 KEINSKKEISFPKNI--DFIFIGTKSDLYSTYTEEYDHL-ISSFTGEGLEELINKIKSIL 362 + S + P+ + + + + +K+DL E D L S + + L+ L++ + L Sbjct: 301 QP--STDLLVSPETVPSNAMIVRSKADL-----ENVDGLSFSVMSDDALQPLLDLLWQRL 353 Query: 363 SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDII-AENLRLASVSLGKITG 421 ++ + S RH L V L A + D DII E LR+AS +L +ITG Sbjct: 354 NHAVAQREHVSLSRARHRAALLDCVAQLNEALNRQTD---DIIRCEYLRVASEALARITG 410 Query: 422 CVDVEQLLDIIFSKFCIGK 440 DVE LLD+IFS+FC+GK Sbjct: 411 RTDVEDLLDVIFSEFCVGK 429 >gi|13473776|ref|NP_105344.1| tRNA modification GTPase TrmE [Mesorhizobium loti MAFF303099] gi|81778888|sp|Q98DZ0|MNME_RHILO RecName: Full=tRNA modification GTPase mnmE gi|14024527|dbj|BAB51130.1| GTP-binding protein in thiophene and furan oxidation [Mesorhizobium loti MAFF303099] Length = 443 Score = 350 bits (898), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 201/441 (45%), Positives = 280/441 (63%), Gaps = 8/441 (1%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 ++I A+S+G LP+ ++++R+SGP V E I R A LR F DG +LD GL Sbjct: 5 DSIVALSSGRLPAGVAVLRISGPQTRFVVETIAGGMVK-DRVAVLRRFKAPDGTVLDSGL 63 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 +I FP P SFTGED AEFHVHGG AVV +LE ++ +R A PGEF+RRAF NGK+DL Sbjct: 64 VIFFPGPASFTGEDVAEFHVHGGRAVVARMLEIISGFDGVRHAEPGEFTRRAFLNGKVDL 123 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +E E+LADL+++ETE QRR ++ G S LY W +L H R+ IEA++DF++E+DV Sbjct: 124 VETEALADLVNAETEAQRRFAVRNAEGVQSELYLSWRRRLIHARAMIEAEIDFADEDDVP 183 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S V +D+ + +I HI+ EIIR G+++VILG NAGKSSLFNALA++D A Sbjct: 184 GSVSDTVWSDVRAMIGEIDRHIAGFHAAEIIREGFEVVILGAPNAGKSSLFNALARRDAA 243 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTD PGTTRD+L + LDL G V+++DTAG+RE VE GI++ + + ADL+LLL Sbjct: 244 IVTDEPGTTRDLLEVTLDLGGLRVRLTDTAGLREAPGKVEAIGIEKARAKADRADLLLLL 303 Query: 306 KEINSKKEIS-FPKNIDFIFIGTKSDLYSTYTE-----EYDHLISSFTGEGLEELINKIK 359 ++I + + P + +GTK DL + YD IS G G+E L+ +I Sbjct: 304 EDILAPGVLGPLPGKAPLLRVGTKLDLLDEGSAREAAGRYDVAISVVGGTGVEALLAEIG 363 Query: 360 SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKI 419 ++ + +PS RH+ L + R+L A+ E G ++ AE LRLA+ SLG+I Sbjct: 364 RRAADAAGDVGDVLPSRLRHVELLGEANRHLLRAA-AEDAAGQELRAEELRLAADSLGRI 422 Query: 420 TGCVDVEQLLDIIFSKFCIGK 440 G +DVE +LD+IFS+FCIGK Sbjct: 423 VGAIDVEDMLDVIFSQFCIGK 443 >gi|121602914|ref|YP_988349.1| tRNA modification GTPase TrmE [Bartonella bacilliformis KC583] gi|205829116|sp|A1UQU6|MNME_BARBK RecName: Full=tRNA modification GTPase mnmE gi|120615091|gb|ABM45692.1| tRNA modification GTPase TrmE [Bartonella bacilliformis KC583] Length = 435 Score = 350 bits (897), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 193/438 (44%), Positives = 277/438 (63%), Gaps = 7/438 (1%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRY--FFGLDGRILDK 63 +TIFAVS+G LPS +++IR+SGP + + +C P+ + + DG LD Sbjct: 2 DTIFAVSSGLLPSGVAVIRVSGPRVVDIVKTLCG---CLPKARFMHHGDLIARDGSFLDS 58 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 L + FP P SFTGED AEFH+HGG AVVN L+EL+ RLA GEFSRRAF GKI Sbjct: 59 ALTVFFPRPHSFTGEDCAEFHLHGGKAVVNRFLDELSTFTGCRLAEAGEFSRRAFIEGKI 118 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL++AE LADLI +ETE QRRL++ G +G L+ LY W +KL R+ IEA+LDFS+E D Sbjct: 119 DLVQAEGLADLIEAETESQRRLAVMGANGHLTELYRHWRNKLMTARALIEAELDFSDEAD 178 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 V NFSS +V ++ L + + HI++G+ I+R+G K+VI+G N+GKSS+ N LA + Sbjct: 179 VSNFSSDKVWQNMQELSDSLCEHIAEGERANILRDGIKVVIVGVPNSGKSSIINRLAGRP 238 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303 VAIVT+ GTTRD L + L L G V + DTAG RET+ +E+ GI V +ADL++ Sbjct: 239 VAIVTEEEGTTRDALEVRLILGGLPVLVMDTAGFRETESKIEQLGIDIAKQHVLDADLVI 298 Query: 304 LLKEINSKKEISFPKNIDFIF-IGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362 L+ ++ + ++IS P I+ +G K D+ + S+ G + + +I+S Sbjct: 299 LVDDMKNPQKISLPNTSAEIWRVGNKLDICEGDKTRWPIQFSALNGLNFDYFLKEIESFC 358 Query: 363 SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGC 422 ++ ++ P+ KR + L + V+ ++ +S+N L + AE+LR AS +LG+ITG Sbjct: 359 LHRIAEIGNIFPARKRQIQLLKEAVKEID-SSINYTFLDLSLRAEHLRRASDALGRITGD 417 Query: 423 VDVEQLLDIIFSKFCIGK 440 +DVE LLDIIFS+FCIGK Sbjct: 418 IDVEDLLDIIFSQFCIGK 435 >gi|319409465|emb|CBI83114.1| tRNA modification GTPase [Bartonella schoenbuchensis R1] Length = 435 Score = 349 bits (896), Expect = 5e-94, Method: Compositional matrix adjust. Identities = 188/438 (42%), Positives = 278/438 (63%), Gaps = 7/438 (1%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRY--FFGLDGRILDK 63 +TIFA+S+G LPS ++++RLSGP + + +C P+ + Y DG LD Sbjct: 2 DTIFALSSGLLPSGVAVVRLSGPHVVNIVKTLCG---CLPKARFMHYGNLIARDGSFLDS 58 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 L + FP P SFTGED AEFH+HGG AVVN L+EL+ P R+A GEFSRRAF GKI Sbjct: 59 ALTVFFPGPHSFTGEDCAEFHLHGGKAVVNRFLDELSAFPECRIAEAGEFSRRAFTEGKI 118 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL++AE+LADLI +ETE QRRL++ G SG L+ LY W ++L R+ IEA++DFS+E+D Sbjct: 119 DLIQAEALADLIEAETEGQRRLAVIGTSGHLTKLYRGWRNELITARALIEAEIDFSDEDD 178 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 + + S E+ ++ L + HI+ G+ I+ +G ++VI+G N+GKSS+ N LA + Sbjct: 179 IPDSISDEIWENMKKLSCSLCEHIAAGERANILTDGLRVVIVGAPNSGKSSIINRLAGRP 238 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303 VAIVT+ GTTRD L I L L G V +DTAG R+T+ +E+ GI+ + +ADL++ Sbjct: 239 VAIVTEEAGTTRDALEIRLILGGLPVFFTDTAGFRKTESKIEQLGIETAKQHIIDADLVI 298 Query: 304 LLKEINSKKEISFPKNIDFIF-IGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362 L+ ++N+ +EI PK I+ +G K DLY + S+ +G + I +I+S Sbjct: 299 LVDDMNNPQEIHLPKTSAEIWRVGNKLDLYKGDKTPWSIQFSALSGLNFDHFIKEIESFC 358 Query: 363 SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGC 422 + ++ + + KR L L + V+ ++ AS+N L + AE+LR AS +LG+ITG Sbjct: 359 LRRVAEIGNVVSAQKRQLQLLKEAVKEID-ASINHISLDLSLRAEHLRRASDALGRITGD 417 Query: 423 VDVEQLLDIIFSKFCIGK 440 ++VE LLD+IFS+FC+GK Sbjct: 418 INVEDLLDVIFSQFCVGK 435 >gi|319404912|emb|CBI78513.1| tRNA modification GTPase [Bartonella rochalimae ATCC BAA-1498] Length = 435 Score = 347 bits (891), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 195/439 (44%), Positives = 275/439 (62%), Gaps = 9/439 (2%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRILD 62 +TIFA+S+G LPS ++I+RLSGP + + +C P KA L ++ L DG LD Sbjct: 2 DTIFAISSGLLPSGVAIVRLSGPRVKYIVKTLCG---CLP-KARLMHYGNLTARDGSFLD 57 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 L + FP+P SFTGED AEFH+HG AVVN L+EL RLA GEFSRRAF GK Sbjct: 58 SALTVFFPAPHSFTGEDCAEFHLHGSKAVVNRFLDELTTFEECRLAEAGEFSRRAFIEGK 117 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 +DL++AESLADLI +ETE QRRL++ G SG L+ LY W L R+ IEA+LDFS+E Sbjct: 118 LDLIQAESLADLIQAETESQRRLAVMGTSGTLTKLYRDWRHILITARALIEAELDFSDEN 177 Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 D+ N S +V DI L + + HIS G+ I+R+G KIVI+G N+GKSS+ N L+ + Sbjct: 178 DIPNSVSDKVWKDIKKLYHSLCEHISAGERASILRDGIKIVIVGAPNSGKSSILNRLSGR 237 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 VAIV++ GTTRD L + L L G LV +DTAG+R+T++ +E GI++ + ADL+ Sbjct: 238 SVAIVSEEEGTTRDALEVRLVLSGLLVLFTDTAGLRKTENTIELLGIEKAKQHIVEADLV 297 Query: 303 LLLKEINSKKEISFPKNIDFIF-IGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSI 361 + + ++N+ +EI+ PK I+ +G K DL + S+ +G + I +I+ Sbjct: 298 IFVYDMNNPQEINLPKTSAEIWHVGNKLDLCEGNKARWPIQFSTLSGLNFDYFIKEIELF 357 Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITG 421 + ++ +IP+ KR L L + + AS+N L + AE+LR AS LG+I G Sbjct: 358 CLRRATEIGDAIPARKRQLQLLKEAAEEIN-ASMNSTSLDLSLCAEHLRRASHILGRIVG 416 Query: 422 CVDVEQLLDIIFSKFCIGK 440 +DVE LLD+IFS+FC+GK Sbjct: 417 DIDVEDLLDVIFSEFCVGK 435 >gi|319899518|ref|YP_004159615.1| tRNA modification GTPase [Bartonella clarridgeiae 73] gi|319403486|emb|CBI77066.1| tRNA modification GTPase [Bartonella clarridgeiae 73] Length = 435 Score = 346 bits (888), Expect = 4e-93, Method: Compositional matrix adjust. Identities = 192/438 (43%), Positives = 272/438 (62%), Gaps = 7/438 (1%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRY--FFGLDGRILDK 63 +TIFAVS+G LPS ++I+RLSGP V + +C P+ + Y DG LD Sbjct: 2 DTIFAVSSGLLPSGVAIVRLSGPHVKNVVKTLCG---CLPKARLMHYGDLIARDGSFLDS 58 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 L + FP+P SFTGED AEFH+HG AVVN L+EL RLA GEFSRRAF GK+ Sbjct: 59 ALTVFFPAPHSFTGEDCAEFHLHGSKAVVNRFLDELTTFEECRLAEAGEFSRRAFIEGKL 118 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL++AESLADLI +ETE QRRL++ G SG L+ LY W KL R+ IEA+LDFS+E D Sbjct: 119 DLIQAESLADLIQAETESQRRLAIMGTSGTLTKLYRDWRHKLMTARALIEAELDFSDEND 178 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 + + S ++ DI L + + HIS G+ I+R+G +IVI G N+GKSS+ N L+ + Sbjct: 179 IPDSVSDKIWQDIEKLYHSLCEHISAGERASILRDGIRIVIAGAPNSGKSSIINRLSGRS 238 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303 VAIV++ GTTRD L + L G LV +DTAG+R+T + +E GI+ + ADL++ Sbjct: 239 VAIVSEEEGTTRDALEVRLVFGGLLVFFTDTAGLRKTKNKIELLGIETAKQHIMEADLVI 298 Query: 304 LLKEINSKKEISFPKNIDFIF-IGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362 + ++N+ +E++ PK I+ +G K DL + S+ +G + I +I+ Sbjct: 299 SVYDMNNPQEVNLPKTSAEIWHVGNKLDLCEGDKIRWPIQFSTLSGLNFDYFIKEIELFC 358 Query: 363 SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGC 422 S + ++ ++P+ KR L L +T + S+N L + AE+LR AS +LG+ITG Sbjct: 359 SRRVTEIGNAVPARKRQLQLLKKTAEEIN-TSINSTSLDLSLRAEHLRRASHALGRITGD 417 Query: 423 VDVEQLLDIIFSKFCIGK 440 +DVE LLDIIFS+FC+GK Sbjct: 418 IDVEDLLDIIFSRFCVGK 435 >gi|319407872|emb|CBI81525.1| tRNA modification GTPase [Bartonella sp. 1-1C] Length = 435 Score = 344 bits (883), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 194/439 (44%), Positives = 274/439 (62%), Gaps = 9/439 (2%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRILD 62 +TIFAVS+G LPS ++I+RLSGP + + +C P KA L ++ L DG LD Sbjct: 2 DTIFAVSSGLLPSGVAIVRLSGPRVKYIVKTLCG---CLP-KARLMHYGNLTARDGSFLD 57 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 L + FP+P SFTGED AEFH+HG AVVN L+EL RLA GEFSRRAF GK Sbjct: 58 SALTVFFPAPHSFTGEDCAEFHLHGSRAVVNRFLDELTTFEECRLAEAGEFSRRAFIEGK 117 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 +DL++AESLADLI +ETE QRRL++ G SG L+ LY W L R+ IEA+LDFS+E Sbjct: 118 LDLIQAESLADLIQAETESQRRLAVMGTSGTLTKLYRDWRHILITARALIEAELDFSDEN 177 Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 D+ N S +V DI L + + HIS G+ I+R+G KIVI+G N+GKSS+ N L+ + Sbjct: 178 DIPNSVSDKVWKDIKKLYHSLCEHISAGERASILRDGIKIVIVGAPNSGKSSILNRLSGR 237 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 VAIV++ GTTRD L + L L G LV +DTAG+R+T++ +E GI++ + ADL+ Sbjct: 238 SVAIVSEEEGTTRDALEVRLVLSGLLVLFTDTAGLRKTENTIELLGIEKAKQHIVEADLV 297 Query: 303 LLLKEINSKKEISFPKNIDFIF-IGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSI 361 + + ++N+ +EI+ PK I+ +G K DL + S+ +G + I +I+ Sbjct: 298 IFVYDMNNPQEINLPKTSAEIWHVGNKLDLCEGSKARWPIQFSTLSGLNFDYFIKEIELF 357 Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITG 421 + ++ +IP+ KR L L + + + +N L + AE+LR AS LG+I G Sbjct: 358 CLRRATEIGDAIPARKRQLQLLKEAAEEINVF-MNSTSLDLSLCAEHLRRASHILGRIVG 416 Query: 422 CVDVEQLLDIIFSKFCIGK 440 +DVE LLD+IFS+FC+GK Sbjct: 417 DIDVEDLLDVIFSEFCVGK 435 >gi|319406398|emb|CBI80039.1| tRNA modification GTPase [Bartonella sp. AR 15-3] Length = 435 Score = 340 bits (872), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 189/438 (43%), Positives = 269/438 (61%), Gaps = 7/438 (1%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRY--FFGLDGRILDK 63 +TIFA+S+G LPS ++I+RLSGP + + +C P+ + Y DG LD Sbjct: 2 DTIFAISSGLLPSGVAIVRLSGPQVRNIVKTLCG---CLPKARLMHYGDLIARDGSFLDS 58 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 L + FP+P SFTGED AEFH+HG AVVN +EL N RLA GEFSRRAF GK+ Sbjct: 59 ALTVFFPAPHSFTGEDCAEFHLHGSKAVVNRFFDELITFENCRLAEAGEFSRRAFVEGKL 118 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL++AESLADLI +ETE QRRL++ G +G L+ LY W +L R+ IEA+LDFS+E D Sbjct: 119 DLIQAESLADLIQAETESQRRLAIIGTNGTLTKLYRDWRQRLITARALIEAELDFSDESD 178 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 + N S +V DI L++ + HIS G+ I+ +G +I I+G N GKSS+ N L+ + Sbjct: 179 IPNSVSGKVWQDIEKLRDSLYEHISAGERASILNDGIRIAIVGAPNCGKSSIINRLSGRS 238 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303 +AIV++ GTTRD L + L L G V +DTAG+RET++ +E GI+ T + ADL++ Sbjct: 239 IAIVSEEEGTTRDALEVRLILGGLPVFFTDTAGLRETENKIELLGIETTKKNIIEADLVI 298 Query: 304 LLKEINSKKEISFPKNIDFIF-IGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362 + ++N+ +E+ PK I+ +G K DL + S+ G + I +I+ Sbjct: 299 FVYDMNNPQEVLLPKTSAEIWHVGNKIDLCEGDKTRWPIQFSTLNGLNFDYFIKEIELFC 358 Query: 363 SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGC 422 + ++ IP+ KR L L + V + ASLN L + AE+LR AS +LG+ITG Sbjct: 359 LRRNTEIGNVIPARKRQLQLLKEVVEEIN-ASLNSFSLDLSLRAEHLRRASHALGRITGD 417 Query: 423 VDVEQLLDIIFSKFCIGK 440 +D+E LLD IFS+FC+GK Sbjct: 418 IDIEDLLDTIFSRFCVGK 435 >gi|307943442|ref|ZP_07658786.1| tRNA modification GTPase TrmE [Roseibium sp. TrichSKD4] gi|307773072|gb|EFO32289.1| tRNA modification GTPase TrmE [Roseibium sp. TrichSKD4] Length = 453 Score = 340 bits (871), Expect = 4e-91, Method: Compositional matrix adjust. Identities = 192/453 (42%), Positives = 267/453 (58%), Gaps = 26/453 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI+A+S+G +PS +++IR+SGP V +C P RKAS+R +G LD+ L Sbjct: 9 DTIYALSSGVVPSGVAVIRVSGPETQAVVRSLCGDVPPV-RKASVRVLRDGEGTALDEAL 67 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 ++ F P SFTGED AE H HGG AVV +L LA R A PGEF+RRAFE G++DL Sbjct: 68 VLYFEGPASFTGEDVAELHCHGGRAVVAAVLNTLAGFQGCRPAEPGEFTRRAFEKGRLDL 127 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 E E L+DLI++ETE QRR ++ M G L +LY W +L H+R+ IEAD DF++EEDV Sbjct: 128 TEVEGLSDLIAAETEQQRRQALRQMGGALGALYEDWRKRLIHMRALIEADFDFADEEDVP 187 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 + EV + L DI+ H+ K GE +R+G ++V++G NAGKSSL NALA +DVA Sbjct: 188 GSVADEVWAEADQLARDIAGHLETSKSGERLRSGLQVVLMGAPNAGKSSLLNALAGRDVA 247 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVT+ GTTRDV+ + LDL GY V + DTAG+R+TD IVE+EGI+R ADLIL Sbjct: 248 IVTEEAGTTRDVIEVHLDLGGYPVTLIDTAGLRQTDGIVEREGIRRAEERGRGADLILWA 307 Query: 306 KEINSKK--------EISFPKNIDFIFIGTKSD------LYSTYTEEYDHLISSFTGEGL 351 E K + S ++ + TK D EE L S+ G+ Sbjct: 308 VEPEGVKPSDPDSGLDDSIRSSVPVRSVRTKQDEIRFDIRLDQSAEEI--LCSTKVEGGM 365 Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT----VRYLEMASLNEKDCGLDIIAE 407 +L++ + + + RH Y L++ ++ +E+ L E ++ AE Sbjct: 366 RDLLDFLTRFAQETISISEAPLATRARHRYFLNEAHACLIKAVELKHLPE-----ELRAE 420 Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +LR A+ +LG+ITG +DVE LLD+IF FCIGK Sbjct: 421 DLRQAADALGRITGRIDVEDLLDVIFRDFCIGK 453 >gi|90421001|ref|ZP_01228905.1| putative tRNA modification GTPase [Aurantimonas manganoxydans SI85-9A1] gi|90334779|gb|EAS48555.1| putative tRNA modification GTPase [Aurantimonas manganoxydans SI85-9A1] Length = 473 Score = 335 bits (858), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 191/476 (40%), Positives = 271/476 (56%), Gaps = 39/476 (8%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M H +TI A+S+G LP+ ++++R+SGP+ V E + P R+ASLR F R Sbjct: 1 MTH-SDTIAALSSGTLPAGVAVVRVSGPAARDVMERLAGSVPP-ERRASLRRFRDAADRT 58 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+G+ + FP P S TGED AEFH+HGG AVV LE +P +RLA GEF+RR FEN Sbjct: 59 IDRGIALFFPGPGSVTGEDLAEFHLHGGRAVVAAFLEAATGIPGVRLAVAGEFTRRGFEN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G+IDL EAE LADL+++ TE QRR+++ G L SLY W+ LT+ R+ IEA DF++ Sbjct: 119 GRIDLTEAEGLADLLAASTEAQRRMAVAQAGGALRSLYEGWMRDLTNARAMIEASFDFAD 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E DV + + V + + + +H+++ GEI+R G+K+ I+G NAGKSSL NALA Sbjct: 179 EGDVDDDVASGVERQVAVVAAAMRAHLAKADRGEILREGFKVAIVGAPNAGKSSLLNALA 238 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++VAIVT+IPGTTRDV+ LDL G V+ SDTAGIRET D +E GI+R ++ AD Sbjct: 239 DREVAIVTEIPGTTRDVIEATLDLGGIPVRFSDTAGIRETADRIEAMGIERARGVMDEAD 298 Query: 301 LILLLKEINSKK-----------EISFP-------------------KNIDFIFIGTKSD 330 L+L L + ++ + P + + I TK D Sbjct: 299 LVLALVDPHAGPTTLEWLSGLLTHVKHPLMLAGHEPASEEAHENRSTSSRPILTIRTKID 358 Query: 331 L------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384 + + D IS+ TGEGL +L+++I I + +P+ RH + Sbjct: 359 QDKLTGGAPPHAPDCDLTISTRTGEGLADLVDRIAEIAATAVGDPDDVVPARTRHRELIG 418 Query: 385 QTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +R L D ++ AE LR S LG +TG V VE LL++IF++FCIGK Sbjct: 419 DALRLLTEFQ-AAPDMPAEVRAETLRRTSHRLGALTGQVGVEDLLEVIFAEFCIGK 473 >gi|328541700|ref|YP_004301809.1| tRNA modification GTPase mnmE [polymorphum gilvum SL003B-26A1] gi|326411452|gb|ADZ68515.1| tRNA modification GTPase mnmE [Polymorphum gilvum SL003B-26A1] Length = 450 Score = 334 bits (857), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 181/450 (40%), Positives = 266/450 (59%), Gaps = 17/450 (3%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD-GRILDKG 64 +TI+A+S+G +P+ +++IR+SGP ++ + K P PR+ +L D G +D+ Sbjct: 3 DTIYALSSGPVPAGVAVIRVSGPLTVEIVRKL-SGKAPTPRRIALGLLRRPDTGEAIDQA 61 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 +++ F P SFTGED AEF HGG AVV +LE LA P R A GEF+RRAF+NG++D Sbjct: 62 VVLFFKGPSSFTGEDVAEFQCHGGRAVVAAVLECLAAFPGTRPAEAGEFTRRAFDNGRMD 121 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L E E LADLI++ETE QRR + M G L LY W +L +R+ IEAD DF++EEDV Sbjct: 122 LTEVEGLADLIAAETEAQRRQAFRQMEGWLGRLYDGWRGRLVQMRAMIEADFDFADEEDV 181 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + V + L DI +H+ Q GE +R G ++V++G NAGKSSL NALA +DV Sbjct: 182 PGSVADGVWDAAAGLLRDIDAHLEQSGRGERLRQGLQVVLMGAPNAGKSSLLNALAGRDV 241 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIVT+ GTTRDV+ + LDL+GY V ++DTAG+R VE+EGI+R ADLIL Sbjct: 242 AIVTEEAGTTRDVIEVHLDLDGYPVTLADTAGLRAEAGRVEREGIRRATERGRGADLILW 301 Query: 305 LKE---------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL-----ISSFTGEG 350 E + E + + TK+DL + + + +S+ TG G Sbjct: 302 AAEPGGPLPEDPLEGLPEAVRAAGVPVWMLRTKTDLVTPPERDSSEMSLVIPVSTQTGMG 361 Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLR 410 ++ L++++ + + + +RH +HL+ A++ + ++ AE+LR Sbjct: 362 IKSLLDRLSCFATETLSLGEAPLATRQRHRFHLAACR-DALAAAVASRGLPAELRAEDLR 420 Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A+ +LG+ITG +DVE LLD+IF +FCIGK Sbjct: 421 RAADALGRITGRIDVEDLLDVIFREFCIGK 450 >gi|163757466|ref|ZP_02164555.1| putative tRNA modification GTPase [Hoeflea phototrophica DFL-43] gi|162284968|gb|EDQ35250.1| putative tRNA modification GTPase [Hoeflea phototrophica DFL-43] Length = 395 Score = 333 bits (853), Expect = 5e-89, Method: Compositional matrix adjust. Identities = 175/383 (45%), Positives = 249/383 (65%), Gaps = 5/383 (1%) Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+GL++ FP+P SFTGED AE H+HG A V +L L + RLA PGEF+R+AFEN Sbjct: 15 LDRGLVLFFPAPHSFTGEDVAELHIHGSRASVAAVLMALTDLDGFRLAEPGEFTRQAFEN 74 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GK+DL E E L+DLI +ETE QRR ++ G L SLY W +LTH R+ IEA+LDFS+ Sbjct: 75 GKLDLTEVEGLSDLIRAETESQRRQALLQADGVLRSLYEGWARRLTHARAMIEAELDFSD 134 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E+D+ S ++ D+ L +I SH+ E++R+GY+I ++G NAGKSSL N L+ Sbjct: 135 EDDIPGSVSDQIWKDMGLLLAEIRSHLECASAAEVVRDGYRIALIGPPNAGKSSLLNYLS 194 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 K+DVAIV+DIPGTTRDV+ + LD+ GYLV + DTAG+RE+ D +E EGI+R+ + E+AD Sbjct: 195 KRDVAIVSDIPGTTRDVVEVRLDIAGYLVVLQDTAGLRESSDQIEIEGIRRSLIAAEDAD 254 Query: 301 LILLLKEINSKKEISFPKNI-DFIFIGTKSD-LYSTYTEEYDHL-ISSFTGEGLEELINK 357 L+L L E + P + + I I TK D L +T + IS+ TG G+++L+ Sbjct: 255 LVLELHEFGVPGRV-VPSGVNERIEIVTKVDCLDEPFTADDAAFGISTLTGAGIDKLLEA 313 Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLG 417 I L N +P+ RH+ L V +E+A + + +++ +E LR A+ S+G Sbjct: 314 ISERLENLAPSGEMGLPTRARHVDLLQDCVTAIEVA-MKSAEAPIEVRSEYLRHAANSMG 372 Query: 418 KITGCVDVEQLLDIIFSKFCIGK 440 +ITG VDVE LL ++FS+FC+GK Sbjct: 373 RITGMVDVEDLLGVVFSEFCVGK 395 >gi|118591441|ref|ZP_01548839.1| tRNA modification GTPase [Stappia aggregata IAM 12614] gi|118436113|gb|EAV42756.1| tRNA modification GTPase [Stappia aggregata IAM 12614] Length = 449 Score = 329 bits (844), Expect = 5e-88, Method: Compositional matrix adjust. Identities = 187/453 (41%), Positives = 275/453 (60%), Gaps = 24/453 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRK---ASLRYFFGLDGRILD 62 +TIFA+S+GA+PS ++++R+SGP + E + + P PRK A LR+ G +LD Sbjct: 3 DTIFALSSGAVPSGVAVLRVSGPKTRGIVEALAGRV-PEPRKTMLAKLRHPE--TGDVLD 59 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 + L++ F P SFTGED AEF HGG AVV+G+L L+ P R A GEF+RRAF+ G+ Sbjct: 60 EALVLYFEGPASFTGEDVAEFQCHGGRAVVSGLLSVLSTFPQCRPAEAGEFTRRAFDRGR 119 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 +DL E E LADLI++ETE QR+ ++ M G L LY W +L H+R+ IEAD DF++EE Sbjct: 120 MDLTEVEGLADLIAAETESQRKQAVRQMGGALGKLYDDWRKRLIHMRAMIEADFDFADEE 179 Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 DV + EV ++ L +I+ H+ + + GE +R+G ++V++G NAGKSSL NA+A + Sbjct: 180 DVPGSVADEVWSEARQLHAEIAEHLEKSRSGERLRSGLQVVLMGAPNAGKSSLLNAIAGR 239 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 +VAIVT+ GTTRDV+ + LDL GY V + DTAG+R+T+ +VEKEGI+R ADLI Sbjct: 240 EVAIVTEEAGTTRDVIEVHLDLSGYPVTLVDTAGLRQTEGVVEKEGIRRAEERGRGADLI 299 Query: 303 LLLKEINSKKE----ISFPKN----IDFIFIGTKSDL-------YSTYTEEYDHLISSFT 347 L E + P + + + TK+DL S T+E SS + Sbjct: 300 LWAVEPGGVEHDDAGAGLPSDLRSSVPVWTVRTKADLETLPKQDSSGTTQEI--ACSSKS 357 Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAE 407 EG+ L ++ + + +RH ++L+ + L A+++ ++ AE Sbjct: 358 VEGMNPLFFRLTRFAEETISLGEAPLATRERHRHYLNDCLSGLR-AAVDMDHLPAELRAE 416 Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +LR A+ +LG+ITG +DVE LLD+IF FCIGK Sbjct: 417 DLRKAADALGRITGRIDVEDLLDVIFRDFCIGK 449 >gi|300024783|ref|YP_003757394.1| tRNA modification GTPase TrmE [Hyphomicrobium denitrificans ATCC 51888] gi|299526604|gb|ADJ25073.1| tRNA modification GTPase TrmE [Hyphomicrobium denitrificans ATCC 51888] Length = 444 Score = 327 bits (837), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 185/435 (42%), Positives = 256/435 (58%), Gaps = 4/435 (0%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD-GRILDKGL 65 TIFA+S+ +A+S+IR+SGP+ V E + P PR A+ R D G LD+ + Sbjct: 13 TIFALSSAPGRAALSVIRISGPAVRNVLETMTAPV-PKPRVAAFRTIRHPDTGEALDRAV 71 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 ++ F +P S TGED AEF HG A V IL L + RLA PGEF+RR FENGK+DL Sbjct: 72 VLWFAAPNSETGEDVAEFQGHGSRAAVAAILGALGTVKGCRLAEPGEFARRGFENGKMDL 131 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 E E L DLI +ETE QRR ++ SG LS LY W +L I + EA +DFS+E DV Sbjct: 132 AEIEGLGDLIEAETEAQRRQALAQSSGTLSKLYESWRTRLIEIAALTEAAIDFSDEGDVS 191 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S + L +I +H+ G GEI+R+G+++ +LG NAGKSSL NALAK+D A Sbjct: 192 ASSFADARKRADALSAEIGAHLDDGHRGEIVRDGFRVALLGAPNAGKSSLLNALAKRDAA 251 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IV++ GTTRDV+ + LDL G V +SDTAGIRE + +VE+EGI+R+ +ADL++ L Sbjct: 252 IVSEEAGTTRDVIEVRLDLAGLPVVVSDTAGIREAESLVEQEGIRRSLAAARDADLVVWL 311 Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365 E + I +K+DL T + +S+ TGEGL+ L+ +I S Sbjct: 312 SEAGDSTPPEPISRETSLAIRSKADLCRESTADL-LAVSAVTGEGLDRLVAEIARRASEA 370 Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDV 425 + RH L + R A LN +++ AE++R A+ ++G+ITG VDV Sbjct: 371 VGTRTDPALTRVRHRQSL-EAARDEIQAFLNGDSGAVELRAEDVRRAAHAIGRITGRVDV 429 Query: 426 EQLLDIIFSKFCIGK 440 E +LD +FS+FCIGK Sbjct: 430 EDVLDQVFSRFCIGK 444 >gi|323135828|ref|ZP_08070911.1| tRNA modification GTPase TrmE [Methylocystis sp. ATCC 49242] gi|322398919|gb|EFY01438.1| tRNA modification GTPase TrmE [Methylocystis sp. ATCC 49242] Length = 434 Score = 322 bits (826), Expect = 5e-86, Method: Compositional matrix adjust. Identities = 184/437 (42%), Positives = 258/437 (59%), Gaps = 8/437 (1%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQV-CEFICKKKKPFPRKASLRYFFG-LDGRILDK 63 +TIFA+ TGA +AI++IRLSGP V EF P PR A L DG LD+ Sbjct: 4 DTIFALGTGAGRTAIAVIRLSGPGVRAVLSEF--AGSTPEPRVARLVELRDPRDGETLDR 61 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 GL I FP+P S TGED AEFHVHGG AVV G+L L++ P LR A PGEF+RR F NGK+ Sbjct: 62 GLTIFFPAPHSATGEDYAEFHVHGGRAVVGGVLAALSRRPGLRSAEPGEFARRGFANGKL 121 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL +AE+LADL+ ++TE QRR ++ G L W L + +EA+LDFS+E D Sbjct: 122 DLSQAEALADLVDAQTEAQRRQALRIAGGALRRRVEAWRAALIEALALVEAELDFSDEGD 181 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 V FS+ + + + ++I + + E +R+G+ ++ILG NAGKS+L NALA++D Sbjct: 182 VSVFSADRLEALLQPVLSEIRAALEDAPASERMRDGFLVMILGAPNAGKSTLLNALARRD 241 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303 +AIV+ PGTTRD++ LDL G V DTAG+RE +D +EK G+ R V ADL+L Sbjct: 242 LAIVSPTPGTTRDMIEAHLDLGGLPVTFVDTAGLREAEDEIEKIGVDRVVERVGTADLVL 301 Query: 304 LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363 L E + + NID + + +K DL+ + I + + GL+ L+N+I Sbjct: 302 WLSEKGEEPSLDALGNIDLLRVWSKCDLHQSAQGWLG--ICATSSLGLDSLLNEIADRAG 359 Query: 364 NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCV 423 + ++ +RH + + A EKD L+ +A++LR A SLG+I G V Sbjct: 360 ARLGDGASALLIRERHRRAAEDAGKMIAAALAPEKD--LEFVADDLRSAGRSLGRIVGSV 417 Query: 424 DVEQLLDIIFSKFCIGK 440 +VE +LD +FS FCIGK Sbjct: 418 EVEDVLDAVFSHFCIGK 434 >gi|163796498|ref|ZP_02190458.1| tRNA modification GTPase TrmE [alpha proteobacterium BAL199] gi|159178348|gb|EDP62892.1| tRNA modification GTPase TrmE [alpha proteobacterium BAL199] Length = 444 Score = 320 bits (821), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 174/440 (39%), Positives = 264/440 (60%), Gaps = 7/440 (1%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A++T + I++IRLSGP+ F E + + R + DG LD + Sbjct: 7 DTIAALATAPGRAGIAVIRLSGPAAFGAVEALTGRVPTVRRMSRALLRDPRDGEALDDAM 66 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 +VFP P SFTGED AEFH+HGG AVV+G+L L ++P +R A+PGEF+RRAF N ++DL Sbjct: 67 AVVFPGPASFTGEDVAEFHLHGGRAVVDGVLGALLRLPGVRPADPGEFTRRAFLNDRLDL 126 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 AE++ DL+ +ET QRR ++ SG L+ +Y W L + ++A +DF +ED+ Sbjct: 127 TAAEAVLDLVDAETAAQRRQALRQASGSLAGIYDDWRTALVMAMARLDAWIDFP-DEDLP 185 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 + V+ D+ L + H++ GE +R G ++ I+G NAGKSSL N LA++DVA Sbjct: 186 ADVVEGVIEDLEGLAKALEGHLADAGRGERLREGLRMAIVGPPNAGKSSLLNWLAQRDVA 245 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IV+ GTTRDVL + LD+EGY ++DTAG+RET D VE EG++R E+ADL L++ Sbjct: 246 IVSATAGTTRDVLEVYLDIEGYPATVADTAGLRETADSVEAEGVRRALARAEDADLRLVV 305 Query: 306 KEINS----KKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSI 361 + ++ ++ I+ + D I I K D + E + +S TG+GL+ L+N+I Sbjct: 306 VDWSASSVDREGIARWLDGDAIAIANKIDRGGSPPEPWIP-VSVTTGQGLDALMNRIAVE 364 Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAENLRLASVSLGKIT 420 L + + RH + + + + A + L++ AE+LRLA+ +LG+IT Sbjct: 365 LEARMAVREAPTLTRARHRHAAQEALEGVRRARDGLQGGVPLELPAEDLRLAARALGRIT 424 Query: 421 GCVDVEQLLDIIFSKFCIGK 440 G VDVE+LLD+IF +FC+GK Sbjct: 425 GKVDVEELLDVIFREFCLGK 444 >gi|83944969|ref|ZP_00957335.1| tRNA modification GTPase [Oceanicaulis alexandrii HTCC2633] gi|83851751|gb|EAP89606.1| tRNA modification GTPase [Oceanicaulis alexandrii HTCC2633] Length = 443 Score = 319 bits (817), Expect = 7e-85, Method: Compositional matrix adjust. Identities = 173/450 (38%), Positives = 272/450 (60%), Gaps = 24/450 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 ETIFA+++ S +++IR+SGP V + + +P PR A+LR F +G ++D+GL Sbjct: 3 ETIFALASAPGRSGVAVIRVSGPETGAVLDAVAGLPRPKPRLAALRAFRTGEGAVIDQGL 62 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + F P SFTGE+ AEFHVHGG AV+ + E ++ +R A GEF+RRAF+NGK+DL Sbjct: 63 ALWFEGPASFTGENCAEFHVHGGTAVIEAMAERFLEL-GVRPAEAGEFTRRAFQNGKMDL 121 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 EAE LADLI +ETE QR ++ M+G L SLY W ++L + + IE ++DF +EEDV Sbjct: 122 TEAEGLADLIDAETEGQREQALSQMTGALRSLYEDWREQLISVLAAIEGEVDFPDEEDVP 181 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S+ + L + +++H+ G+ GE +R G+ I ++G NAGKS+L NALA++D A Sbjct: 182 ETLSETAGPPLAMLSDALTAHLEDGRRGERVREGFSIALIGEPNAGKSTLLNALARRDAA 241 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTDIPGTTRDV+ + L L G+ V ++DTAG+R+ D VE EG++R +NADL L + Sbjct: 242 IVTDIPGTTRDVVEVRLVLAGFPVIVADTAGLRDAADQVEAEGVRRALDRAQNADLRLGV 301 Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD-----HL----------ISSFTGEG 350 +++ + + P + + T +D + + D HL +S+ +G G Sbjct: 302 VDVSRE---TLPAKL----LETLTDADALILNKMDQGQTLHLSDELGMTRFELSAKSGLG 354 Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLR 410 L L ++ ++ ++ + S RH + + + +L MA+ ++ ++ A ++ Sbjct: 355 LPALEGWLEEVVRDRLSRREAPALSRARHRQAVERALDHL-MAAQSQLARAPELAASDVH 413 Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LA +L +TG +DVE +LD +FS+FCIGK Sbjct: 414 LAIRALESLTGRIDVEDVLDRVFSQFCIGK 443 >gi|299133195|ref|ZP_07026390.1| tRNA modification GTPase TrmE [Afipia sp. 1NLS2] gi|298593332|gb|EFI53532.1| tRNA modification GTPase TrmE [Afipia sp. 1NLS2] Length = 439 Score = 318 bits (816), Expect = 8e-85, Method: Compositional matrix adjust. Identities = 174/441 (39%), Positives = 260/441 (58%), Gaps = 3/441 (0%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M + TI+A+++G PSAI+I+R+SGP E +C + P PR A+L + Sbjct: 1 MPFQLPTIYALASGRPPSAIAIVRVSGPRAAATLESLCGRL-PRPRTATLTTLTSPETGP 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+ + + FP+P S TGED AEF +HGG AV+ + L K+ LR A PGEF+RRAFEN Sbjct: 60 IDQAVALWFPAPHSATGEDVAEFQLHGGRAVIAALFAALGKIEGLRPAEPGEFTRRAFEN 119 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GK+DL EAE L DLI ++T+ QRR ++ + G L W ++ + +EA +DFS+ Sbjct: 120 GKLDLTEAEGLDDLIHADTDRQRRQALRHLQGLLGHRAQTWRKQIIEAMALVEAGIDFSD 179 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E DV + + LK++I ++ E +R G ++ I G NAGKS+L N LA Sbjct: 180 EGDVSAELMAPAMQRVAALKSEIQEILAASAQSERLREGLQVAIAGPPNAGKSTLLNRLA 239 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 +++ AIV+ GTTRDV+ + LDL+GY V + DTAG+RET+D VE+EG++R E+AD Sbjct: 240 RREAAIVSPYAGTTRDVIEVHLDLDGYPVTLIDTAGLRETNDPVEQEGVRRARARAESAD 299 Query: 301 LILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTE-EYDHLISSFTGEGLEELINKIK 359 L+L + E + K DL +T T+ E IS+ TG+G++ ++ + Sbjct: 300 LVLWMCEAGDDAPPPLADGAPLWVVRNKIDLAATPTKGEGGFAISAATGQGVDAVVGSLV 359 Query: 360 SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKI 419 + F ++ S RH L++TV LE A + G +I+AE LR+A +LG++ Sbjct: 360 DFARDTFGGGEAALVSRARHRALLTETVEALERAGQRGGE-GDEIVAEELRIAIHALGRL 418 Query: 420 TGCVDVEQLLDIIFSKFCIGK 440 G VDVE++LD IF +FCIGK Sbjct: 419 LGRVDVEEILDSIFREFCIGK 439 >gi|114326676|ref|YP_743833.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase [Granulibacter bethesdensis CGDNIH1] gi|122328339|sp|Q0BW92|MNME_GRABC RecName: Full=tRNA modification GTPase mnmE gi|114314850|gb|ABI60910.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase [Granulibacter bethesdensis CGDNIH1] Length = 440 Score = 318 bits (814), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 180/447 (40%), Positives = 266/447 (59%), Gaps = 20/447 (4%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64 +ETIFA+++GA +AI++IR+SGP+ +C P RK+SLR G ILD+G Sbjct: 3 QETIFALASGAGRAAIAVIRISGPATRNTVTHLCGTLPP-QRKSSLRRLRNRSGEILDQG 61 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 +++ F P SFTGED AE H+HGG AV+ G+ + L + LR A GEF+RRAF NGK+D Sbjct: 62 IILWFAGPGSFTGEDCAELHLHGGNAVIEGMADALVDL-GLRPAEAGEFTRRAFLNGKLD 120 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L EAE++ADLI +ET QRR +++ + G LS W LT + ++ E +DF +E D+ Sbjct: 121 LTEAEAVADLIDAETSAQRRQALQQLDGGLSRQLETWTATLTRVLAWQETLIDFPDE-DL 179 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + D+L L+ +++ +++G E +R G ILG NAGKSSL N+LA +D Sbjct: 180 PAEVDAALRTDLLLLRQEMAQALNEGAKAEKLREGLIFTILGKPNAGKSSLLNSLASRDA 239 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIV+ PGTTRD + + L L G V + DTAG+R++ D +E EG++R E+ADL+L Sbjct: 240 AIVSSQPGTTRDTIEVRLVLAGVPVTLIDTAGLRDSADSIEAEGVRRALARAESADLVLR 299 Query: 305 LKEINSKKEISF-----PKNIDF--IFIGTKSDLYSTYTEEYD-HLISSFTGEGLEELIN 356 +I++ E F P + + + IGTKSDL T D L+S+ TG+G+E L Sbjct: 300 TVDISTATEADFSAEQWPGSSEARSLMIGTKSDLPYTPPSSPDIVLVSTLTGDGMERLKT 359 Query: 357 KIKS---ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLAS 413 +++ L++ P + H+ L Q + E A L E + AE +RLA Sbjct: 360 MLEAEARALTSHATGAPLTRARHRAALQDAIQHLEDAESARLEE------LRAEEIRLAR 413 Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++G++TG + VEQ+LD +FS FCIGK Sbjct: 414 QAVGRVTGQIGVEQILDHVFSSFCIGK 440 >gi|158426332|ref|YP_001527624.1| tRNA modification GTPase TrmE [Azorhizobium caulinodans ORS 571] gi|205829055|sp|A8I264|MNME_AZOC5 RecName: Full=tRNA modification GTPase mnmE gi|158333221|dbj|BAF90706.1| small GTP-binding protein [Azorhizobium caulinodans ORS 571] Length = 435 Score = 318 bits (814), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 175/443 (39%), Positives = 264/443 (59%), Gaps = 11/443 (2%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD--- 57 M +TIFA+S+G +PS ++++R SGP + + P PR A RY + Sbjct: 1 MTRSSDTIFALSSGRVPSGVAVVRASGPRAREAGLALAGLVPP-PRVA--RYVALREPGT 57 Query: 58 GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 G +LD+GL++ FP P S TGED+ E H+HGG AVV +L L K+P R A GEF+RRA Sbjct: 58 GDLLDRGLILFFPGPRSATGEDTLELHLHGGPAVVTAVLRTLVKLPGFRPAAAGEFTRRA 117 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 NGK+DL E E LADLI +E+E QRR ++ SG LS W ++L + +EA +D Sbjct: 118 HANGKMDLAEVEGLADLIVAESEAQRRQALAQSSGALSRAVAGWRERLIRALALVEATID 177 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 FS+E DV + + + L ++++ ++ GE +R+G+ I I G NAGKS+L N Sbjct: 178 FSDEGDVPDDLTGPARAEAAALCTELTTALADADRGERVRDGFIIAIAGPPNAGKSTLLN 237 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 LA ++ AIV+ +PGTTRDVL + L L G V + DTAG+RETDD+VE EG++R + E Sbjct: 238 RLAGREAAIVSPVPGTTRDVLEVHLHLAGQAVTLVDTAGLRETDDLVEAEGVRRARVRAE 297 Query: 298 NADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINK 357 +DL+L L + + P + + TK+D+ EE + +IS+ TG G+ LI + Sbjct: 298 GSDLVLWLSDDGTAPPTDMPAP---LRVRTKADVTGAEGEEDEIVISAQTGAGINTLIAE 354 Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLG 417 ++ L P ++ + +R + LS + L+ A+L + D++AE+LRLA+ +L Sbjct: 355 MERRLGEMGGGEP-ALVTRERQRHALSDALYELD-AALAIQTHDEDLMAEHLRLAARALD 412 Query: 418 KITGCVDVEQLLDIIFSKFCIGK 440 ++ G VDVE +L+ +F FCIGK Sbjct: 413 QVVGRVDVEDVLESLFRTFCIGK 435 >gi|71083056|ref|YP_265775.1| tRNA modification GTPase [Candidatus Pelagibacter ubique HTCC1062] gi|123647187|sp|Q4FNR7|MNME_PELUB RecName: Full=tRNA modification GTPase mnmE gi|71062169|gb|AAZ21172.1| tRNA modification GTPase [Candidatus Pelagibacter ubique HTCC1062] Length = 443 Score = 317 bits (812), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 186/445 (41%), Positives = 288/445 (64%), Gaps = 14/445 (3%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD-GRILDKGL 65 TI+A+STG S I+I+R+SG +V + + P R A+LR ++ ++D+G+ Sbjct: 2 TIYALSTGPGISGIAIVRVSGKDTKKVIKLLTNAALPETRVATLRKINKINTSELIDEGI 61 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 ++ FP PES+TGED AEFH+HG AV++ + ++K+ N RLA+PGEF++ AF+NGKI+L Sbjct: 62 ILWFPGPESYTGEDMAEFHIHGSKAVIDALHHSISKIKNCRLADPGEFTKLAFQNGKINL 121 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 L+AES+ADLIS+ETE+QR+ +++ M+G+ + + +KL I S +EA +DF +E+ + Sbjct: 122 LKAESIADLISAETEIQRQQAIKIMNGKSADKFNNLREKLLKILSHVEAKIDFPDEDLPE 181 Query: 186 NF--SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 + + K++ N+++ +I + K+GE IR G+KI I+G +NAGKSSL N L+ +D Sbjct: 182 DILKNIKKISNEVIL---NIKKILDDQKVGERIREGFKIAIIGPTNAGKSSLLNHLSNRD 238 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303 VAIV++I GTTRDV+ L+++GY V +SDTAGIR++ + +EK+GIK + +NADL L Sbjct: 239 VAIVSEIAGTTRDVIETHLNIDGYPVVVSDTAGIRDSKNEIEKKGIKLALDKADNADLKL 298 Query: 304 LL---KEINSKKEISFPKNIDFIFIGTKSDL----YSTYTEEYDH-LISSFTGEGLEELI 355 ++ K I+ K + + + I + KSDL ++ + Y+H LIS LE+LI Sbjct: 299 IVIDAKSIDFKGVLKELMDENAILVINKSDLLNKDLNSEIKNYEHVLISVKNNLNLEDLI 358 Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVS 415 +KIK+ L NKF + + RH HL Q++ L+ + D AE+LRLA+ Sbjct: 359 SKIKNKLKNKFITSEDILITRARHRQHLEQSLNCLKNFEEKNEAEDFDKAAEDLRLATRH 418 Query: 416 LGKITGCVDVEQLLDIIFSKFCIGK 440 LG I G VDVE++L IF+ FCIGK Sbjct: 419 LGMIVGKVDVEEILGSIFNDFCIGK 443 >gi|114571503|ref|YP_758183.1| tRNA modification GTPase TrmE [Maricaulis maris MCS10] gi|122314956|sp|Q0AKE8|MNME_MARMM RecName: Full=tRNA modification GTPase mnmE gi|114341965|gb|ABI67245.1| tRNA modification GTPase trmE [Maricaulis maris MCS10] Length = 438 Score = 316 bits (809), Expect = 6e-84, Method: Compositional matrix adjust. Identities = 179/438 (40%), Positives = 257/438 (58%), Gaps = 7/438 (1%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66 T++A++T A S +++IRLSG + + + +P PR A+LR G ++D+GL+ Sbjct: 4 TVYALATPAGRSGVAVIRLSGGGAGGMLDALAGLPRPQPRMATLRALRDSGGSVMDRGLV 63 Query: 67 IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126 + FP P SFTGEDSAEFHVHGG AV++ +L L + A GEF+RRAFEN KIDL Sbjct: 64 LWFPGPGSFTGEDSAEFHVHGGPAVIDAVLSALDEA-GAHPAEAGEFTRRAFENEKIDLT 122 Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186 EAE LADLI +ETE QR ++ MSG L LY W D L + IE ++DF +E DV + Sbjct: 123 EAEGLADLIDAETEGQRVQALSQMSGSLRRLYDGWRDALITAMASIEGEIDFPDEADVPD 182 Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246 S + L + H+ G+ GE IR G+ IV++G NAGKSSL N LA++D AI Sbjct: 183 ALSHAAYEPLSELIGSMFEHLDDGRRGERIRIGFSIVLIGAPNAGKSSLLNCLARRDAAI 242 Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306 VTDIPGTTRD++ + L L G+ V ISDTAG+RE D +E EG++R E+ADL + + Sbjct: 243 VTDIPGTTRDIVEVQLTLGGFPVVISDTAGLREAVDAIEAEGVRRALDRAEHADLRIGVA 302 Query: 307 EINSKKEI----SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362 + S +E+ + D + + K DL + + +S+ +G+G+E L +I+ I+ Sbjct: 303 DARSDEELVDLEGRLTDGDLLVL-NKLDLGLVSERDGAYRLSAKSGDGVEALEARIEQIV 361 Query: 363 SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGC 422 ++ S RH + + L D ++ E+ RLA +L +TG Sbjct: 362 RDRLSVREMPALSRVRHRRAVETALEALSRCRDQLADA-PELAGEDARLAVRALESLTGR 420 Query: 423 VDVEQLLDIIFSKFCIGK 440 VDVE +LD +FS+FCIGK Sbjct: 421 VDVEDILDRVFSQFCIGK 438 >gi|254456366|ref|ZP_05069795.1| tRNA modification GTPase TrmE [Candidatus Pelagibacter sp. HTCC7211] gi|207083368|gb|EDZ60794.1| tRNA modification GTPase TrmE [Candidatus Pelagibacter sp. HTCC7211] Length = 443 Score = 313 bits (801), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 190/452 (42%), Positives = 282/452 (62%), Gaps = 28/452 (6%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD-GRILDKGL 65 TI+++S+G S I+IIR+SGP V + + K P PR A+LR ++ ++D+G+ Sbjct: 2 TIYSLSSGPGISGIAIIRVSGPDTSNVLKLLTNKSLPKPRVATLRKINKINTSELIDEGI 61 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 L+ FP+PES+TGED AE VHG AV++ I ++K+ N RLA PGEF++ AF+NGKI+L Sbjct: 62 LLWFPAPESYTGEDMAEIQVHGSKAVIDAIHSSISKVENCRLAEPGEFTKLAFQNGKINL 121 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 L+AES+ADLIS+ETE+QR+ +++ M+G+ + + +KL I S +EA +DF +ED+ Sbjct: 122 LKAESIADLISAETEIQRKQAIKIMNGKSADQFNFLREKLLKILSHVEAKIDFP-DEDLP 180 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 N KE+ + +I + K+GE IR G+KI ILG +NAGKSSL N L+ +DVA Sbjct: 181 NDILKEIKKSSDEVLINIKKILDDQKVGERIREGFKIAILGPTNAGKSSLLNHLSNRDVA 240 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IV++I GTTRDV+ L+++GY V +SDTAGIR++ + +EK+GIK + + ADL L++ Sbjct: 241 IVSEIAGTTRDVIETHLNIDGYPVIVSDTAGIRDSKNEIEKKGIKLSLNRADEADLKLVV 300 Query: 306 KEINSKKEISFPKNIDF------------IFIGTKSDLY----STYTEEYDH-LISSFTG 348 ++ KN+DF I + KSDL ++++H LIS Sbjct: 301 VDV---------KNLDFTDVLMGLLDQNSILVINKSDLLKGDIDPEIKKFNHILISIKEN 351 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAEN 408 ++ELI+KIK L NKF + + +RH HL Q + +L + + D AE+ Sbjct: 352 LNIDELISKIKKNLKNKFITSDDILITRERHRQHLEQCLEHLNNFNKKNEVEDFDKAAED 411 Query: 409 LRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LRLA+ LG I G VDVE++L IF+ FCIGK Sbjct: 412 LRLATRHLGMIVGKVDVEEILGSIFNDFCIGK 443 >gi|163851007|ref|YP_001639050.1| tRNA modification GTPase TrmE [Methylobacterium extorquens PA1] gi|163662612|gb|ABY29979.1| tRNA modification GTPase TrmE [Methylobacterium extorquens PA1] Length = 444 Score = 312 bits (799), Expect = 7e-83, Method: Compositional matrix adjust. Identities = 167/442 (37%), Positives = 260/442 (58%), Gaps = 4/442 (0%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR- 59 + +TIFA ++G +A++++R+SGP+ + + + P PR+ SLR + R Sbjct: 5 LPDRDDTIFAPASGFGRAAVTVVRISGPAAGLTLDRLAGGR-PEPRRLSLRCLRDPESRD 63 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 ILD+ L+ P P + TGED AE H+HGG+AV + +L L ++P R A G FSRRAF Sbjct: 64 ILDQALVAWLPGPATATGEDMAELHLHGGLAVRSAVLRALGRVPGCRPAEAGAFSRRAFL 123 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NG+IDL EAE +ADLI +ETE QR ++ + G L W + + + EA LDF+ Sbjct: 124 NGRIDLTEAEGIADLIDAETEAQRVQALRQIDGALGRQVAAWRETGIDLLAGAEAALDFA 183 Query: 180 EEEDVQNFSSKEVLND-ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 +E DV L+ FL++ I + ++ G+ GE +R G+ +V+ G NAGKS+L NA Sbjct: 184 DEGDVDEAGLDAALSGRAAFLRDAIRAALADGRRGERLREGFCVVLAGAPNAGKSTLLNA 243 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L +D AIV+DIPGTTRD + + DL G V + DTAG+R+T D +E EG+KRT + Sbjct: 244 LTGRDAAIVSDIPGTTRDAIEVRCDLGGLPVVLVDTAGLRDTADAIEAEGVKRTQSRIRG 303 Query: 299 ADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKI 358 ADL+L L + + + ++ + + TK+DL E IS+ TG GL+ L++ I Sbjct: 304 ADLVLHLVPADGETDAGRFADVPLLLVRTKTDLAPEVPGEGGLAISAVTGAGLDALLDAI 363 Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGK 418 ++ + ++ + +RH LS+ +L+ + +++AE+LRLA +LG+ Sbjct: 364 QAAAQTALGQ-GDALVTRERHREALSRAAAHLDRVATASAGFPPELVAEDLRLAVRALGE 422 Query: 419 ITGCVDVEQLLDIIFSKFCIGK 440 + G V VE++LD +F+ FCIGK Sbjct: 423 VGGHVGVEEMLDRLFAGFCIGK 444 >gi|154251725|ref|YP_001412549.1| tRNA modification GTPase TrmE [Parvibaculum lavamentivorans DS-1] gi|205415789|sp|A7HSK9|MNME_PARL1 RecName: Full=tRNA modification GTPase mnmE gi|154155675|gb|ABS62892.1| tRNA modification GTPase TrmE [Parvibaculum lavamentivorans DS-1] Length = 438 Score = 311 bits (798), Expect = 9e-83, Method: Compositional matrix adjust. Identities = 181/443 (40%), Positives = 266/443 (60%), Gaps = 14/443 (3%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI-LDKG 64 ETI+A+ST A + I+++RLSGP + +K PR+A L F + LD+G Sbjct: 2 ETIYALSTAAGRAGIAVLRLSGPHARAALRALTGRKAGAPREAMLCRFRDPETHAALDRG 61 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 L I FP+P SFTGED E H+HGG AV+ +L L ++P LR A PGEF+RRAFENGK+D Sbjct: 62 LAIFFPAPASFTGEDVVELHIHGGRAVIAAMLRALGQLPGLRAAQPGEFTRRAFENGKLD 121 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L E E LADLI +ETE QR ++ M G L LY W +L ++ EA++DF +EE Sbjct: 122 LTEVEGLADLIDAETEAQRAQALRQMEGALGQLYEAWRARLMRALAYAEAEIDFPDEEVP 181 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + +K + DI L+ +I++H+ G+ GE +R+G ++ I+G NAGKSSL N LA ++ Sbjct: 182 GDLIAK-LGPDIEALETEIAAHLDDGRRGEQLRDGVEVAIVGPPNAGKSSLLNRLAGREA 240 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIV+D GTTRDVL + LD+ G V ++DTAG+RE +E+EG++R E ADL ++ Sbjct: 241 AIVSDEAGTTRDVLEVRLDIGGVPVTLADTAGLREAAGAIEQEGVRRALARAEAADLRIV 300 Query: 305 L-----KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIK 359 + I + ++ P ++ + K DL + + IS+ TG+G++ L + Sbjct: 301 MVAPGVSGIGNGFALARPDDLRVL---NKVDLGAEVPDGVIG-ISALTGQGIDALEAALA 356 Query: 360 SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLD--IIAENLRLASVSLG 417 + + + ++ + + RH L+ L A K G D ++AE+LRLA+ +LG Sbjct: 357 ARVGSAYEAREHPVITRARHREGLADCAASLARAEAALK-AGRDAELVAEDLRLAARALG 415 Query: 418 KITGCVDVEQLLDIIFSKFCIGK 440 +ITG VDVE LLD+IF FCIGK Sbjct: 416 RITGRVDVEDLLDVIFRDFCIGK 438 >gi|301613774|ref|XP_002936375.1| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial-like [Xenopus (Silurana) tropicalis] Length = 491 Score = 310 bits (794), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 185/469 (39%), Positives = 278/469 (59%), Gaps = 35/469 (7%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFF-GLDGRILD 62 ++TIFA+S+G +S+IR SGP+ + + K+ P PR+ +L G +LD Sbjct: 25 RDTIFALSSGHGKCGVSVIRTSGPASGDALQLLTGWKQLPPPRRVTLTSLLCPTTGELLD 84 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 +GL++ F P+SFTGED E+HVHGG AVV G+L+ L + LR A PGEF++RAF+NGK Sbjct: 85 RGLVLWFSGPKSFTGEDCCEYHVHGGPAVVMGVLQALGTVQMLRPAEPGEFTKRAFQNGK 144 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 +DL EAE L DLI +ETE+QRR ++ MSGEL LY +W +L + +EA +DFSE++ Sbjct: 145 LDLTEAEGLGDLIHAETEIQRRQALRQMSGELGQLYQKWSHRLVTALAHVEAFIDFSEDD 204 Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 +V+ V +++ L+ ++ H+ + GE +R+G +V+ G +NAGKSSL N ++K Sbjct: 205 NVEENVLTSVDSEVKNLQEELEDHLKDSRRGERLRDGLHLVLAGATNAGKSSLLNLTSQK 264 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 AIV+ IPGTTRDV+ L++ GY V +SDTAG+R+++D VEKEG++R ++NAD++ Sbjct: 265 PAAIVSPIPGTTRDVVETVLNIGGYPVIMSDTAGLRDSEDPVEKEGVRRAKERLDNADIL 324 Query: 303 LLLKEINS------------KKEISFP----KNIDFIFIGTKSDL-----YSTYTE---- 337 + + + + K +SFP K + + + KSDL ++ E Sbjct: 325 IAVVDASKVPITRISILAHLKSLLSFPSSEGKLREVLLVLNKSDLLDPPGHAKVQELCKD 384 Query: 338 ---EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS--HKRHLYHLSQTVRYLEM 392 +S TG+G+ + I +K L PS RH HL++ + LE Sbjct: 385 PELPTACFLSCQTGQGVGDFIYILKQKLEKICGDPLHGAPSLTQTRHRLHLNKCLEALEQ 444 Query: 393 ASL-NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++ E+D L + AE LR++ LG ITG V VE +LDIIF FCIGK Sbjct: 445 YTIYREQD--LVLAAEELRISYRELGAITGRVGVEGILDIIFRDFCIGK 491 >gi|254504318|ref|ZP_05116469.1| putative GTPase [Labrenzia alexandrii DFL-11] gi|222440389|gb|EEE47068.1| putative GTPase [Labrenzia alexandrii DFL-11] Length = 405 Score = 309 bits (791), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 166/394 (42%), Positives = 241/394 (61%), Gaps = 14/394 (3%) Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 I+D+ L++ F P SFTGED EF HGG AVV +L L + PN R A PGEF+RRAF+ Sbjct: 13 IIDQALVLFFEGPASFTGEDVVEFQCHGGRAVVAAMLRILGEFPNCRPAEPGEFTRRAFD 72 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 G++DL E E LADLI++ETE QR+ ++ M G L SLY W +L H+R+ IEAD DF+ Sbjct: 73 RGRMDLTEVEGLADLIAAETESQRKQAVRQMGGALGSLYEDWRKRLIHMRAMIEADFDFA 132 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 +EEDV + EV + L+++++ H+ Q + GE +R+G ++V++G NAGKSSL NA+ Sbjct: 133 DEEDVPGSVADEVWKEAATLQSEVTRHLEQSRSGERLRSGLQVVLMGAPNAGKSSLLNAI 192 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 A +DVAIVT+ GTTRDV+ + LDL GY V + DTAG+RETD IVE+EGI+R A Sbjct: 193 AGRDVAIVTEEAGTTRDVIEVHLDLGGYPVTLVDTAGLRETDGIVEREGIRRAEERGRQA 252 Query: 300 DLILLLKEINS----KKEISFPKN----IDFIFIGTKSDLYSTYTEEYDHLI-----SSF 346 DL+L E + P++ + + TK+DL + ++ + SS Sbjct: 253 DLVLWAVEPGGVEPDHPQAGLPEDVADRVPVWTVRTKADLETLPEQDSSGITEKIPASSK 312 Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIA 406 + EG++ L + + + + RH ++L+ + L A ++ ++ A Sbjct: 313 SDEGMKGLFDALTRFAEETISVGEAPLATRARHRHYLNDCLSGLGQA-VSSDHLPTELRA 371 Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E+LR A+ SLG+ITG +DVE LLD+IF FCIGK Sbjct: 372 EDLRRAADSLGRITGRIDVEDLLDVIFRDFCIGK 405 >gi|221236808|ref|YP_002519245.1| tRNA modification GTPase TrmE [Caulobacter crescentus NA1000] gi|220965981|gb|ACL97337.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase [Caulobacter crescentus NA1000] Length = 456 Score = 308 bits (790), Expect = 8e-82, Method: Compositional matrix adjust. Identities = 176/452 (38%), Positives = 272/452 (60%), Gaps = 25/452 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TIFA++T A SA++++R+SGP ++ +C + P PR AS+R +G LD L Sbjct: 13 DTIFALATAAGRSAVAVVRVSGPRSSEIAAALCGRL-PSPRLASVRTL-KHNGVALDAAL 70 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 ++ F P S+TGEDS EFHVHGG AVV +L L+++ RLA GEF+RRAFENGK+DL Sbjct: 71 VLRFEKPASYTGEDSVEFHVHGGRAVVEALLAALSEL-GARLAEAGEFTRRAFENGKLDL 129 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE +ADLI +ETE QRR ++ + G LS Y +W D L + +EA +DF +E D+ Sbjct: 130 AQAEGVADLIDAETEAQRRQALGQVGGALSQRYDRWRDLLVQALAMLEAAVDFPDE-DLP 188 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 ++ + L ++++ ++ G +R+G++I ++G NAGKS+L N LA++D A Sbjct: 189 EEVAERARPGLRQLSAELNAALADVSRGRRVRDGFRIALIGAPNAGKSTLLNGLAERDAA 248 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTD+ GTTRDV+ + L L GY V ++DTAGIRET D++E EG++R E ADL L + Sbjct: 249 IVTDVAGTTRDVIEVPLVLGGYKVLVADTAGIRETADVIEAEGVRRAKAWAEAADLRLWV 308 Query: 306 KE-INSKKEISFPKNI---DFIFIGTKSDLYSTYTEEYDHLISSFTGEGL---------- 351 + + K+ + P+ I D++ + K+D+ + H+ + GEGL Sbjct: 309 VDGFHVKQADARPEAIRVGDWLIL-NKTDIAD--ADASAHVAERWAGEGLTVLHIAGTSA 365 Query: 352 ---EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAEN 408 E L + S +++ F + RH LS+ YLE A L++ +++ AE+ Sbjct: 366 EGPEALRAALASHVADALSGAEFPAATRLRHAERLSEARSYLERA-LSDVGLEVELAAED 424 Query: 409 LRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +RLA+ +L +I+G +D E +L +FS FCIGK Sbjct: 425 VRLAARALERISGRIDPEDVLGRVFSTFCIGK 456 >gi|114799625|ref|YP_762235.1| tRNA modification GTPase TrmE [Hyphomonas neptunium ATCC 15444] gi|123027538|sp|Q0BWA8|MNME_HYPNA RecName: Full=tRNA modification GTPase mnmE gi|114739799|gb|ABI77924.1| tRNA modification GTPase TrmE [Hyphomonas neptunium ATCC 15444] Length = 441 Score = 308 bits (789), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 167/440 (37%), Positives = 270/440 (61%), Gaps = 6/440 (1%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64 ++TI A+++G PSAI+IIR+SGP+ ++ + + P P++A+L Y + DG ++D+G Sbjct: 4 RDTICALASGPPPSAIAIIRISGPAVAEIGKSLLASGLPEPKRAALTYIYDSDGALIDQG 63 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 + + +P S+TGED+ E ++HGG AV++ L L + +RLA PGEF+RRAFENGK+D Sbjct: 64 IALYANAPHSYTGEDTLELYLHGGPAVIDHALRGLTAIAGVRLAEPGEFTRRAFENGKLD 123 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L EAE +AD+I +ET Q+ ++ + G L+ +Y W ++LT + IE +DF +E DV Sbjct: 124 LTEAEGVADIIEAETGAQKAQALRQLGGGLTEIYDGWREELTGTLALIEVMIDFPDEGDV 183 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 +++ +L+ + + ++I + + +GE IR+G+++ I+G NAGKSS+ N LA+++ Sbjct: 184 PEDTARPILSRLEKIMSEIETALGDRGVGERIRDGFRVAIVGPPNAGKSSILNRLARREA 243 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIVTDI GTTRDV+ + L L G +V I+DTAG+RET+D+VE EG++R ADL + Sbjct: 244 AIVTDIAGTTRDVVEVRLVLGGQVVWIADTAGLRETEDVVEAEGVRRARRAAAEADLRIH 303 Query: 305 LKEINSKKEISFPKNIDF--IFIGTKSDLYSTYTEEYDHL-ISSFTGEGLEELINKIKSI 361 + I+ P+ ++ I + K+D L IS TGEG+++L + I + Sbjct: 304 V--IDGTDPSPPPEQVETQDIIVFNKADQRPAILAPDGALPISVITGEGIDKLESWIAAF 361 Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDIIAENLRLASVSLGKIT 420 +S + + + + RH L + L A D G ++ E++R+A L + Sbjct: 362 VSRRASSVEAPVITRARHREKLVAGLASLTAARDALVSDMGAELAGEDVRMALRQLSSVI 421 Query: 421 GCVDVEQLLDIIFSKFCIGK 440 G VDVE +L +FSKFCIGK Sbjct: 422 GRVDVEDVLGAVFSKFCIGK 441 >gi|16127986|ref|NP_422550.1| tRNA modification GTPase TrmE [Caulobacter crescentus CB15] gi|239977483|sp|P0CAX2|MNME_CAUCR RecName: Full=tRNA modification GTPase mnmE gi|239977563|sp|B8GW34|MNME_CAUCN RecName: Full=tRNA modification GTPase mnmE gi|13425532|gb|AAK25718.1| thiophene and furan oxidation protein ThdF [Caulobacter crescentus CB15] Length = 446 Score = 308 bits (789), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 176/452 (38%), Positives = 272/452 (60%), Gaps = 25/452 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TIFA++T A SA++++R+SGP ++ +C + P PR AS+R +G LD L Sbjct: 3 DTIFALATAAGRSAVAVVRVSGPRSSEIAAALCGRL-PSPRLASVRTL-KHNGVALDAAL 60 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 ++ F P S+TGEDS EFHVHGG AVV +L L+++ RLA GEF+RRAFENGK+DL Sbjct: 61 VLRFEKPASYTGEDSVEFHVHGGRAVVEALLAALSEL-GARLAEAGEFTRRAFENGKLDL 119 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE +ADLI +ETE QRR ++ + G LS Y +W D L + +EA +DF +E D+ Sbjct: 120 AQAEGVADLIDAETEAQRRQALGQVGGALSQRYDRWRDLLVQALAMLEAAVDFPDE-DLP 178 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 ++ + L ++++ ++ G +R+G++I ++G NAGKS+L N LA++D A Sbjct: 179 EEVAERARPGLRQLSAELNAALADVSRGRRVRDGFRIALIGAPNAGKSTLLNGLAERDAA 238 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTD+ GTTRDV+ + L L GY V ++DTAGIRET D++E EG++R E ADL L + Sbjct: 239 IVTDVAGTTRDVIEVPLVLGGYKVLVADTAGIRETADVIEAEGVRRAKAWAEAADLRLWV 298 Query: 306 KE-INSKKEISFPKNI---DFIFIGTKSDLYSTYTEEYDHLISSFTGEGL---------- 351 + + K+ + P+ I D++ + K+D+ + H+ + GEGL Sbjct: 299 VDGFHVKQADARPEAIRVGDWLIL-NKTDIAD--ADASAHVAERWAGEGLTVLHIAGTSA 355 Query: 352 ---EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAEN 408 E L + S +++ F + RH LS+ YLE A L++ +++ AE+ Sbjct: 356 EGPEALRAALASHVADALSGAEFPAATRLRHAERLSEARSYLERA-LSDVGLEVELAAED 414 Query: 409 LRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +RLA+ +L +I+G +D E +L +FS FCIGK Sbjct: 415 VRLAARALERISGRIDPEDVLGRVFSTFCIGK 446 >gi|332373472|gb|AEE61877.1| unknown [Dendroctonus ponderosae] Length = 501 Score = 308 bits (788), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 189/488 (38%), Positives = 275/488 (56%), Gaps = 54/488 (11%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSC-FQVCEFICKKKKPFPRKASLRYF-FGLDG 58 + TIFA+S+G +++IR+SGP + + K+ P PR LR + Sbjct: 20 LRQNSSTIFALSSGLGKCGVAVIRVSGPEAGTAISKLTTLKELPQPRTVVLRSIKHPISN 79 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 ++DKGL++ P P SFTGEDS+EFHVHGG+AV+NG+L+ LA MP +LA PGEF+RRAF Sbjct: 80 ELIDKGLILWLPGPRSFTGEDSSEFHVHGGVAVINGLLDALASMPKFKLAEPGEFTRRAF 139 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NGK+DL E E LADL+ +ETE QR+ ++ G LS LY W L H + +EA +DF Sbjct: 140 SNGKLDLTEVEGLADLLQAETEAQRKQALLQADGSLSKLYENWRHVLKHSVANLEAHIDF 199 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E E +++ V+ +I L DI+ H+ G+ GEI+R G K VILG N GKSSL N Sbjct: 200 EETETLEDGLVDNVVKNIEVLSADINKHMRDGRKGEILRRGVKAVILGEPNVGKSSLLNL 259 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVE 297 L ++ +IVT I GTTRDV+ + L+++GY + +SDTAG+R ++ D++E EG+ R + Sbjct: 260 LCQRPASIVTPISGTTRDVIQVTLNIQGYPLVLSDTAGLRKDSQDVIELEGMSRAVDIYQ 319 Query: 298 NADLILL-------------------------LKEINSKKEISFPKNIDFIF------IG 326 ADL++L +KE+ I+ PK+ +F + Sbjct: 320 KADLVILVIDFQNYSNWCHRHAADFKTYILHYIKELGVSDLINDPKDGQTMFKKECVVVL 379 Query: 327 TKSDLYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKL---PFSIPSHKRH 379 K+DL S + H +S T G+ +L+ ++L+ K L P Sbjct: 380 NKTDLDSKAVCDKIHKNIVKLSCKTEAGISDLV----TVLAQHLKILCGEPSQEHPSMNQ 435 Query: 380 LYHLSQTVR-------YLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDII 432 + H Q ++ +LE AS N+ D L I+AE+LR A SLGK+ G V E++LD+I Sbjct: 436 VRHREQLLKCQKHLQSFLEDASKNKPD--LVIMAEHLRKALTSLGKLIGTVTSEEILDLI 493 Query: 433 FSKFCIGK 440 F +FCIGK Sbjct: 494 FREFCIGK 501 >gi|83953076|ref|ZP_00961798.1| tRNA modification GTPase [Sulfitobacter sp. NAS-14.1] gi|83842044|gb|EAP81212.1| tRNA modification GTPase [Sulfitobacter sp. NAS-14.1] Length = 428 Score = 307 bits (787), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 177/437 (40%), Positives = 253/437 (57%), Gaps = 12/437 (2%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TIFA +T + + +IR+SGP F + E I + P PR A++R DG+++D+ L Sbjct: 2 DTIFAQATAQGRAGVCVIRISGPQAFFIAETIAQPL-PAPRMAAVRAISDADGQVIDRAL 60 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 ++ F SP SFTGED+ E H+HG IAVV +L L+ RLA PGEF+RRA ENGK+DL Sbjct: 61 VLTFESPNSFTGEDTVELHLHGSIAVVRAVLALLSGFDGTRLAEPGEFTRRAMENGKLDL 120 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 + E L DLI +ETE QR+ ++ +SG L W +KL + +E +DF+ +EDV Sbjct: 121 TQVEGLGDLIEAETEAQRKQALRVLSGHLGQKVDIWREKLIRAAALLEVTIDFA-DEDVP 179 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S EV + + DI + I+ E IR G+++ I+G NAGKS+L NALA +D A Sbjct: 180 VDVSPEVTELLNAVNIDILAEIAGTHTAERIRTGFEVAIIGRPNAGKSTLLNALAGRDAA 239 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 I + + GTTRDV+ + +DL G V + DTAG+RE D VE GI R E ADL + L Sbjct: 240 ITSAVAGTTRDVIEVRMDLGGLPVTLLDTAGLREGADEVEAIGIDRAKTRGEQADLRVFL 299 Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365 E +E+ D I + K DL + D IS TG+G+ +LI +I++IL Sbjct: 300 SE--EGEELPVAATADDIVLRPKGDLRDS----ADDAISGVTGQGVPQLIERIQTILGA- 352 Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYL--EMASLNEKDCGLDIIAENLRLASVSLGKITGCV 423 + L + +H+RH L ++ L M L+ DI +E LR + +L + G + Sbjct: 353 -RSLNAGLATHERHRVALQKSAEGLAAAMLVLDHGPDQYDIASEELRHSIRALEALVGRI 411 Query: 424 DVEQLLDIIFSKFCIGK 440 DVE LLD+IFS FC+GK Sbjct: 412 DVENLLDVIFSSFCLGK 428 >gi|195999388|ref|XP_002109562.1| hypothetical protein TRIADDRAFT_53723 [Trichoplax adhaerens] gi|190587686|gb|EDV27728.1| hypothetical protein TRIADDRAFT_53723 [Trichoplax adhaerens] Length = 494 Score = 307 bits (786), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 191/482 (39%), Positives = 275/482 (57%), Gaps = 51/482 (10%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLD-GRILD 62 + T+FAVS+G S +++IR++GP + + + K P PR ASLR + G ++D Sbjct: 18 RSTVFAVSSGHGVSGVAVIRVTGPETSEAVKLMTKSDNLPKPRYASLRKIYQPSTGDLVD 77 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 KGL++ FP P SFTGED AEF VHGG AVV GIL L+++ L A G+F+RRAFEN K Sbjct: 78 KGLILWFPGPNSFTGEDLAEFQVHGGSAVVEGILTSLSEIDGLYPAMAGDFTRRAFENEK 137 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 +DL E E LADLI ++TE QR+ ++ M G LS LY W L + IEA +DFSE+ Sbjct: 138 LDLTEVEGLADLIHAQTEAQRKQALRQMDGHLSQLYKIWSKTLLKSVADIEATIDFSEDV 197 Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 +++ V N + L ++ +H+ G+ GE +R+G +VI G N GKSSL N L ++ Sbjct: 198 -IEDGILTNVKNSVNKLAKEVRNHLEDGRRGEKLRSGVNVVIAGPPNVGKSSLLNLLCQR 256 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 AIV+ + GTTRDV+ +++ GY V SDTAGIR++ D VEKEGIKR ++ AD + Sbjct: 257 PAAIVSPLEGTTRDVVETAVNIGGYPVLFSDTAGIRQSIDPVEKEGIKRAKSKISAADFV 316 Query: 303 LLLKEINSKKEI-----------------------SFPKNIDFIFIGTKSDLYST----- 334 L++ +++ K + F +NI+++ I K+DL + Sbjct: 317 LIVHDLSKYKHVDIDGLLESPLRMLNTNVDESTSADFDENIEYLMILNKADLITNNLAVQ 376 Query: 335 YTEEYDH------LISSFTGEGLEELINKIKSILSNKFKKL----PFSIPS--HKRHLYH 382 E ++ +IS TG+G+E+ IN ILS K K + PS RH +H Sbjct: 377 MKEAFNTKGVNACIISCETGDGIEDFIN----ILSQKMKDICGDPVVGNPSITQARHRFH 432 Query: 383 LSQTVR----YLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCI 438 L + + YL MA +D L + AE LR+A LG+ITG + E +LD+IF FCI Sbjct: 433 LREALNSLEIYLRMAHDGFEDHDLVLGAEELRIALRELGRITGNIGTEDILDVIFRDFCI 492 Query: 439 GK 440 GK Sbjct: 493 GK 494 >gi|146337363|ref|YP_001202411.1| tRNA modification GTPase TrmE [Bradyrhizobium sp. ORS278] gi|205829156|sp|A4YJT5|MNME_BRASO RecName: Full=tRNA modification GTPase mnmE gi|146190169|emb|CAL74161.1| putative tRNA modification GTPase (trmE) [Bradyrhizobium sp. ORS278] Length = 444 Score = 307 bits (786), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 176/447 (39%), Positives = 261/447 (58%), Gaps = 10/447 (2%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+ +TIFA+S+G LPSAI+I+RLSGP + + K P PR + G Sbjct: 1 MHPHDQTIFALSSGRLPSAIAIVRLSGPHAGAALQMLAGKM-PAPRLVTRALLRDPQGEP 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D +++ FP+P S TGE+ E H+HG AV+ + L++ P LR A PGEF+RRAFEN Sbjct: 60 IDDAVVLWFPAPASATGENVVELHIHGSRAVIATLFGVLSETPELRPAEPGEFTRRAFEN 119 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GK+DL EAE L DLI ++T+ QRR ++ + G L +W +++ + IEA +DFS+ Sbjct: 120 GKLDLTEAEGLDDLIHADTDRQRRQALRQLKGLLGDKVRRWREQIIEAAALIEAGIDFSD 179 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E DV L+ + L +I + ++ E +R+G +VI G NAGKS+L N LA Sbjct: 180 EGDVPAELLAPALSRVQQLLLEIEAVLAAQGRAERLRDGLTVVIAGPPNAGKSTLMNQLA 239 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 +++VAIV+ GTTRD++ + LDL+GY V + DTAGIRETDD VE+EG++R +AD Sbjct: 240 RREVAIVSPQAGTTRDLIEVQLDLDGYPVTVIDTAGIRETDDPVEQEGVRRARDRAAHAD 299 Query: 301 LILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL-------ISSFTGEGLEE 353 L+L L E + E+ + TK+DL IS+ +G G+ Sbjct: 300 LVLWLSE-HDGAEVERQGETPLWLVRTKTDLDGAERATRPDTKASRTFGISARSGAGMGA 358 Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLAS 413 L++ + N F + + +R L QT L+ SL+ D G +++AE LR+A+ Sbjct: 359 LLDALVGFARNFFGSTESGLITRERQRQSLRQTADALQR-SLDTVDLGEELVAEELRIAA 417 Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++LG++ G VDVE LLD+IF +FCIGK Sbjct: 418 LALGRLLGRVDVEDLLDVIFREFCIGK 444 >gi|209883526|ref|YP_002287383.1| tRNA modification GTPase TrmE [Oligotropha carboxidovorans OM5] gi|209871722|gb|ACI91518.1| tRNA modification GTPase TrmE [Oligotropha carboxidovorans OM5] Length = 442 Score = 306 bits (784), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 175/445 (39%), Positives = 259/445 (58%), Gaps = 8/445 (1%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M + TI+A+++G P+AI+I+R+SGP QV E +C + P PR A+L Sbjct: 1 MPLQPPTIYALASGRPPAAIAIVRVSGPQVPQVLERLCGRL-PQPRTATLVTLTSPGTGP 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+ + + FP+P S TGED AEF +HGG AV+ + L K+ LR A PGEF+RRAFEN Sbjct: 60 IDQAVALWFPAPHSATGEDVAEFQLHGGRAVIAALFAALEKIDGLRPAEPGEFTRRAFEN 119 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GK+DL EAE L DLI ++T+ QRR ++ + G L W ++ + IEA +DFS+ Sbjct: 120 GKLDLTEAEGLDDLIHADTDRQRRQALRHLQGLLGHRAESWRAQIIEAMALIEAGIDFSD 179 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E DV L + L+ +I ++ E +R G ++ I G NAGKS+L N LA Sbjct: 180 EGDVSTELMAPALARVASLRTEIEETLAASAQSERLREGLQVAIAGPPNAGKSTLLNRLA 239 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 +++ AIV+ GTTRD++ + LDL+GY V + DTAG+R+ D VE+EG++R E AD Sbjct: 240 RREAAIVSPHAGTTRDIIEVHLDLDGYPVTLIDTAGLRDASDPVEQEGVRRARARAEAAD 299 Query: 301 LILLLKEINSKKEISFPKNIDFIFIGTKSDL-----YSTYTEEYDHLISSFTGEGLEELI 355 L+L L E S + + K DL ST + IS+ TGEG+++L+ Sbjct: 300 LVLWLDEAESNA-TPLAGEVPLWRVRNKIDLAGKVGASTGGSDPAFAISAVTGEGVDQLV 358 Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVS 415 + S+ F ++ S RH L++TV L+ A + G +I+AE LR+A + Sbjct: 359 AALVGFASDYFGGGEAALVSRARHRVLLTETVAALKRAE-DRAGQGDEIVAEELRIAIHA 417 Query: 416 LGKITGCVDVEQLLDIIFSKFCIGK 440 +G++ G VDVE++LD IF +FCIGK Sbjct: 418 VGRLLGRVDVEEILDSIFREFCIGK 442 >gi|66472790|ref|NP_001018605.1| tRNA modification GTPase GTPBP3, mitochondrial precursor [Danio rerio] gi|82192604|sp|Q501Z5|GTPB3_DANRE RecName: Full=tRNA modification GTPase GTPBP3, mitochondrial; AltName: Full=GTP-binding protein 3; Flags: Precursor gi|63100959|gb|AAH95801.1| GTP binding protein 3 [Danio rerio] Length = 500 Score = 306 bits (783), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 187/471 (39%), Positives = 277/471 (58%), Gaps = 41/471 (8%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR-ILDKG 64 +TI+++S+G ++++R+SGP+ + + P PR ASLR + +LD+G Sbjct: 35 DTIYSLSSGQGKCGVAVVRVSGPASALAVRRL-TRSLPAPRTASLRSISHPQSKELLDRG 93 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 L++ FP P SFTGEDSAEFH+HGG AV++G+L+ L +P LR A GEF+RRAF GK+D Sbjct: 94 LVLWFPGPASFTGEDSAEFHIHGGPAVISGVLQALGSLPGLRPAEAGEFTRRAFYAGKLD 153 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L E E L+DLI +ETE QRR ++ M+G+L +Y W D+L + +EA +DFSE+E + Sbjct: 154 LTEVEGLSDLIHAETEAQRRQALRQMAGDLGRIYQDWTDQLKRCLAHVEAFIDFSEDELI 213 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 ++ +V + L+ D+ +H+S + GE +R+G +VI G +NAGKSSL N L ++ Sbjct: 214 EDGVLNDVDRAVQQLQTDMENHLSDERRGERLRSGVHVVIAGSTNAGKSSLLNLLTQRPA 273 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIV+ GTTRDVL + LD+ GY V +SDTAG+R+T D VE+EG++R VE ADL L+ Sbjct: 274 AIVSPTAGTTRDVLEVPLDIGGYPVLLSDTAGLRDTSDSVEQEGVRRARQRVEQADLSLV 333 Query: 305 ---LKEINSKKEISFP-------KNI--------DFIFIGTKSDLYSTYTEEYDH----- 341 L ++ S++ P KNI I I +SDL S + Sbjct: 334 VVDLTQLPSERR-HVPVFLRGHLKNILERSSQQQQHILILNESDLVSAEQQRSIQTSLQE 392 Query: 342 --------LISSFTGEGLEELI----NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY 389 +S + +GLEEL+ N +K++ + P + RH HL +++ Sbjct: 393 LSGAPSACFLSCHSRDGLEELLTLLHNTLKTLCGDPLIGSP--TLTQTRHRTHLQKSIEA 450 Query: 390 LEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L+ +D L + AE LRL +SLG+ITG V E++LD+IF FCIGK Sbjct: 451 LQQYH-EYRDVDLALAAEGLRLGLLSLGRITGRVSPEEILDVIFRDFCIGK 500 >gi|288956852|ref|YP_003447193.1| tRNA modification GTPase [Azospirillum sp. B510] gi|288909160|dbj|BAI70649.1| tRNA modification GTPase [Azospirillum sp. B510] Length = 443 Score = 305 bits (782), Expect = 7e-81, Method: Compositional matrix adjust. Identities = 188/447 (42%), Positives = 268/447 (59%), Gaps = 21/447 (4%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG-LDGRILDKGL 65 TI+A++T S ++++R+SGP + + P PR+A L DG LD L Sbjct: 5 TIYALATAPGRSGVAVVRISGPEAGSALAALTGRPLPLPRRAVLATLRDPRDGDALDDAL 64 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 ++ F +P SFTGED E H+HGG AVV G++E LA +P LRLA PGEF+RRAFENGK+DL Sbjct: 65 VLRFTAPASFTGEDVVELHLHGGRAVVTGVVEALATLPGLRLAEPGEFTRRAFENGKLDL 124 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 EAE++ADLI +ET QRR ++ M G L LY W ++LT + IEAD+DF+ EED+ Sbjct: 125 TEAEAVADLIDAETTAQRRQALRQMEGALGRLYDGWRERLTRALAHIEADIDFA-EEDLP 183 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 ++ V + L +I++H+ G GE +R G I I+G NAGKSSL NALA++D A Sbjct: 184 GGVAEAVRPVLAGLAGEIAAHLDDGGRGERLREGLHIAIVGAPNAGKSSLLNALARRDAA 243 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLILL 304 IV+ GTTRD++ + LDL GY V ++DTAG+R D VE+EGI+R AD+ + Sbjct: 244 IVSARAGTTRDIIEVHLDLGGYPVVLADTAGLREAAADEVEEEGIRRARDRAARADVKIA 303 Query: 305 LKEINSKKEISFPKNIDFI-----FIGTKSDLYSTYTEEYDH---LISSFTGEGLEELIN 356 + + + ++ P +D I + K+DL + D L+S+ TG GL+ L Sbjct: 304 VFDATTLPDLD-PATLDLIDGDTVVVFNKTDLAAAGDLRPDLSPILLSAHTGAGLKRLEE 362 Query: 357 KIKSILSNKFKKLPFSIPS--HKRHLYHLSQTVRYLEMASLNEKDCGL-DIIAENLRLAS 413 +++ +++ S PS RH L++ L A D L ++ AE++RLAS Sbjct: 363 TLRAFSADRLAI--GSAPSLTRARHRAALTECRESLSRA----LDAPLPELAAEDVRLAS 416 Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440 +LG+ITG VDVE LLD+IF FCIGK Sbjct: 417 RALGRITGRVDVEDLLDVIFRDFCIGK 443 >gi|91762518|ref|ZP_01264483.1| tRNA modification GTPase [Candidatus Pelagibacter ubique HTCC1002] gi|91718320|gb|EAS84970.1| tRNA modification GTPase [Candidatus Pelagibacter ubique HTCC1002] Length = 443 Score = 305 bits (782), Expect = 7e-81, Method: Compositional matrix adjust. Identities = 191/456 (41%), Positives = 287/456 (62%), Gaps = 36/456 (7%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD-GRILDKGL 65 TI+A+STG S I+I+R+SG ++ + + + P PR A+LR ++ ++D+G+ Sbjct: 2 TIYALSTGPGISGIAIVRVSGEDTKKIIKLLTNAELPKPRVATLRKINKINTSELIDEGI 61 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 ++ FP PES+TGED AEFH+HG AV++ + ++K+ N RLA+PGEF++ AF+NGKI+L Sbjct: 62 ILWFPGPESYTGEDMAEFHIHGSKAVIDALHHSISKIENCRLADPGEFTKLAFQNGKINL 121 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 L+AES+ADLIS+ETE+QR+ +++ M+G + + + +KL I S +EA +DF +E+ Sbjct: 122 LKAESIADLISAETEIQRQQAIKIMNGNSADKFNELREKLLKILSHVEAKIDFPDED--- 178 Query: 186 NFSSKEVLNDILFLKNDISSHISQ----GKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 S+++L +I + N++ +I + K+GE IR G+KI I+G +NAGKSSL N L+ Sbjct: 179 --LSEDILKNIKKISNEVILNIKKILDDQKVGERIREGFKIAIIGPTNAGKSSLLNHLSN 236 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 +D AIV++I GTTRDV+ I L+++GY V +SDTAGIR++ + +EK+GIK + ENADL Sbjct: 237 RDAAIVSEIAGTTRDVIEIHLNIDGYPVVVSDTAGIRDSKNEIEKKGIKLALDKAENADL 296 Query: 302 ILLLKEINSKKEISFPKNIDF------------IFIGTKSDLYST----YTEEYDH-LIS 344 L++ + KNIDF I + KSDL + Y+H LIS Sbjct: 297 KLIVID---------AKNIDFKGVLKELMDESAILVVNKSDLLKEDLNFEIKNYEHVLIS 347 Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI 404 +E LI KIK+ L NKF + + RH HL Q++ YL+ + D Sbjct: 348 VKNNLNVEGLILKIKNKLKNKFITNEDILITRARHRQHLEQSLNYLKNFEEKNEAEDFDK 407 Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 AE+LRLA+ LG I G VDVE++L IF+ FCIGK Sbjct: 408 AAEDLRLATRHLGMIVGKVDVEEILGSIFNDFCIGK 443 >gi|254560700|ref|YP_003067795.1| tRNA modification GTPase trmE [Methylobacterium extorquens DM4] gi|254267978|emb|CAX23846.1| tRNA modification GTPase trmE [Methylobacterium extorquens DM4] Length = 444 Score = 305 bits (781), Expect = 9e-81, Method: Compositional matrix adjust. Identities = 171/442 (38%), Positives = 260/442 (58%), Gaps = 4/442 (0%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR- 59 + +TIFA ++G +A++++R+SGP+ + + + P PR+ SLR D R Sbjct: 5 LPDRDDTIFAPASGFGRAAVTVVRISGPAAGLALDRLAGGR-PEPRRLSLRRLRDPDSRD 63 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 ILD+ L+ P P + TGED AE H+HGG+AV + +L LA +P R A G FSRRAF Sbjct: 64 ILDQALVAWLPGPATATGEDMAELHLHGGLAVRSAVLRALAGVPGCRPAEAGAFSRRAFL 123 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NG+IDL EAE +ADLI +ETE QR ++ + G L W + + + EA LDF+ Sbjct: 124 NGRIDLTEAEGIADLIDAETEAQRVQALRQLDGALGRQVAAWRETGIDLLAGAEAALDFA 183 Query: 180 EEEDVQNFSSKEVLND-ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 +E DV L+ L++ I + ++ G+ GE +R G+ +V+ G NAGKS+L NA Sbjct: 184 DEGDVDEDGLDAALSGRATALRDAIRAALADGRRGERLREGFCVVLAGAPNAGKSTLLNA 243 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L+ +D AIV+DIPGTTRD + + DL G V + DTAG+RET D +E EG+KRT + + Sbjct: 244 LSGRDAAIVSDIPGTTRDAIEVRCDLGGLPVVLVDTAGLRETADAIEAEGVKRTQSRIRS 303 Query: 299 ADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKI 358 ADL+L L K + +I + + TK+DL E IS+ TG GL+ L++ I Sbjct: 304 ADLVLHLVPAGGKADAELFTDISILLVRTKTDLAPEVPGEGGLAISAVTGAGLDALLDAI 363 Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGK 418 ++ + ++ + +RH LS+ +L+ + +++AE+LRLA +LG+ Sbjct: 364 QAAAQTALGQ-GDALVTRERHREALSRAAAHLDRVATASAGFPPELVAEDLRLAVRALGE 422 Query: 419 ITGCVDVEQLLDIIFSKFCIGK 440 + G V VE++LD +F+ FCIGK Sbjct: 423 VGGHVGVEEMLDRLFAGFCIGK 444 >gi|240138138|ref|YP_002962610.1| tRNA modification GTPase trmE [Methylobacterium extorquens AM1] gi|240008107|gb|ACS39333.1| tRNA modification GTPase trmE [Methylobacterium extorquens AM1] Length = 444 Score = 305 bits (781), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 168/442 (38%), Positives = 263/442 (59%), Gaps = 4/442 (0%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR- 59 + +TIFA ++G +A++++R+SGP+ + + ++ P PR+ SLR D R Sbjct: 5 LPDRDDTIFAPASGFGRAAVTVVRISGPAAGLALDRLAGRR-PEPRRLSLRRLRDPDSRD 63 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 +LD+ L+ P P + TGED AE H+HGG+AV + +L L ++P R A G FSRRAF Sbjct: 64 LLDQALVAWLPGPATATGEDMAELHLHGGLAVRSAVLRALGRVPGCRPAEAGAFSRRAFL 123 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NG+IDL EAE +ADLI +ETE QR ++ + G L W + + + EA LDF+ Sbjct: 124 NGRIDLTEAEGIADLIDAETEAQRVQALRQLDGALGRQVAAWRETGIDLLAGAEAALDFA 183 Query: 180 EEEDVQNFSSKEVLND-ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 +E DV L+ L++ I + ++ G+ GE +R G+ +V++G NAGKS+L NA Sbjct: 184 DEGDVDEDGLDAALSGRATALRDAIRAALADGRRGERLREGFCVVLVGAPNAGKSTLLNA 243 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L+ +D AIV+DIPGTTRD + + DL G V + DTAG+RET D +E EG+KRT + + Sbjct: 244 LSGRDAAIVSDIPGTTRDTIEVRCDLGGLPVVLVDTAGLRETADAIEAEGVKRTQSRIRS 303 Query: 299 ADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKI 358 ADL+L L + K + ++ + + TK+DL E IS+ TG GL+ L++ I Sbjct: 304 ADLVLHLVPADGKADAGRFADVPVLLVRTKTDLAPEVPGEGGLAISAVTGAGLDALLDAI 363 Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGK 418 ++ + ++ + +RH LS+ +L+ + +++AE+LRLA +LG+ Sbjct: 364 QAAAQTALGQ-GDALVTRERHREALSRAAAHLDRVATAAAGFPPELVAEDLRLAVRALGE 422 Query: 419 ITGCVDVEQLLDIIFSKFCIGK 440 + G V VE++LD +F+ FCIGK Sbjct: 423 VGGHVGVEEMLDRLFAGFCIGK 444 >gi|83942027|ref|ZP_00954489.1| tRNA modification GTPase [Sulfitobacter sp. EE-36] gi|83847847|gb|EAP85722.1| tRNA modification GTPase [Sulfitobacter sp. EE-36] Length = 428 Score = 305 bits (781), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 174/437 (39%), Positives = 254/437 (58%), Gaps = 12/437 (2%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TIFA +T + + +IR+SGP F + E I + P PR A++R DG+++D+ L Sbjct: 2 DTIFAQATAQGRAGVCVIRISGPQAFFIAETIAQPL-PAPRVAAVRAISDADGQVIDRAL 60 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 ++ F P SFTGED+ E H+HG IAVV +L L+ RL+ PGEF+RRA ENGK+DL Sbjct: 61 VLTFEGPNSFTGEDTVELHLHGSIAVVRAVLALLSGFDGTRLSEPGEFTRRAMENGKLDL 120 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 + E L DLI +ETE QR+ ++ +SG L W +KL + +E +DF+ +EDV Sbjct: 121 TQVEGLGDLIEAETEAQRKQALRVLSGHLGQKVDIWREKLIRAAALLEVTIDFA-DEDVP 179 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S EV + + DI + I+ E IR G+++ I+G NAGKS+L NALA +D A Sbjct: 180 VDVSPEVTELLNAVNADILAEIAGTHTAERIRTGFEVAIIGRPNAGKSTLLNALAGRDAA 239 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 I + + GTTRDV+ + +DL G V + DTAG+RE D VE GI R E ADL + L Sbjct: 240 ITSAVAGTTRDVIEVRMDLGGLPVTLLDTAGLREGADEVEAIGIDRAKTRGEQADLRVFL 299 Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365 E +++ D I + K+DL + D+ IS TG+G+ +LI +I++IL Sbjct: 300 SE--EGEDLPVAATADDIVLRPKADLRDS----ADNAISGVTGQGVPQLIERIQAILGA- 352 Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYL--EMASLNEKDCGLDIIAENLRLASVSLGKITGCV 423 + L + +H+RH L ++ L M L+ DI +E LR + +L + G + Sbjct: 353 -RSLNAGLATHERHRVALQKSAEGLAAAMLVLDHGPDQYDIASEELRHSIRALEALVGRI 411 Query: 424 DVEQLLDIIFSKFCIGK 440 DVE LLD+IFS FC+GK Sbjct: 412 DVENLLDVIFSSFCLGK 428 >gi|217978725|ref|YP_002362872.1| tRNA modification GTPase TrmE [Methylocella silvestris BL2] gi|217504101|gb|ACK51510.1| tRNA modification GTPase TrmE [Methylocella silvestris BL2] Length = 448 Score = 305 bits (781), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 170/442 (38%), Positives = 257/442 (58%), Gaps = 5/442 (1%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG-LDGR 59 + +TIFAV++GA +A++I+RL+GP+ + + + + P PR A+L F G Sbjct: 10 IGRSGDTIFAVASGAGRAAVAILRLTGPASGAIVKAVAGRLPP-PRVATLATFRDPATGE 68 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 +D+GL+I F P S+TGEDSAEFH+HGG AVV G++ + R A GEFSRRA Sbjct: 69 AIDQGLVIFFQGPRSYTGEDSAEFHIHGGRAVVAGLIAAIGSFEGARAAEAGEFSRRALM 128 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NGK+DL + E + DL+++ET QRR ++ +G L G W L + I AD+DFS Sbjct: 129 NGKLDLGQIEGIGDLVAAETASQRRQALRQTAGMLGRRAGGWRAALIEASARIAADIDFS 188 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 +E DV + ++ I + ++ + + GE IR G IVI G NAGKS+L NAL Sbjct: 189 DEGDVAAAPALDIAPIIAPVLAELRGELHAARAGERIREGLTIVIAGPPNAGKSTLLNAL 248 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 A++DVAIV+ GTTRDVL ++LDL GY + DTAG+RET D VE+ G+ R +NA Sbjct: 249 ARRDVAIVSKHAGTTRDVLEVELDLGGYAAVLIDTAGLRETTDPVEQIGVSRALERAQNA 308 Query: 300 DLILLLKEINS-KKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKI 358 DL+L L E+ + + + + + TK+DL + E IS+ +G L+ L++++ Sbjct: 309 DLVLWLSELGDFQAPDARLTDAELWQVATKADLAPSAQAEAALCISAASGLNLDVLLDRL 368 Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGK 418 + + + +RH +++ L A + ++I+AE+LR A +L + Sbjct: 369 AQFAAEAGGAGHDGVITRERHRKSIAEAESAL--ARILSDSAPVEIVAEDLRAALFALER 426 Query: 419 ITGCVDVEQLLDIIFSKFCIGK 440 + G VDVE +L IFS+FCIGK Sbjct: 427 LVGRVDVEDILGDIFSRFCIGK 448 >gi|315497189|ref|YP_004085993.1| tRNA modification gtpase trme [Asticcacaulis excentricus CB 48] gi|315415201|gb|ADU11842.1| tRNA modification GTPase TrmE [Asticcacaulis excentricus CB 48] Length = 446 Score = 305 bits (780), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 183/455 (40%), Positives = 271/455 (59%), Gaps = 24/455 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M H K+TIFA+++ + +S+IR+SGP QV E + + P PR A+L + DG + Sbjct: 1 MFHVKQTIFALASAQGRAGVSVIRISGPQAAQVVEALLGRL-PRPRYATLGHLR-YDGEL 58 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVN---GILEELAKMPNLRLANPGEFSRRA 117 +D+ L++ F P SFTGED AEFH+HG AV+ G+ L LR A PGEFSRRA Sbjct: 59 IDQALVLWFKGPSSFTGEDCAEFHIHGSRAVLERLYGVFRAL----GLRHAEPGEFSRRA 114 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 FENGK+DL +AE+++DL+ +E+E QRR ++ + G Y QW D L I + IEA +D Sbjct: 115 FENGKLDLTQAEAISDLVEAESEAQRRQALMQLEGGFRDRYAQWRDALIRILAHIEAIVD 174 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 F +E D+ S+ ++ DI+ LK ++ + IS + G+ IR GY+I I+G NAGKSSLFN Sbjct: 175 FPDE-DIPEHLSERIVADIITLKTEVGAAISDARRGQQIREGYRIAIMGKPNAGKSSLFN 233 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 AL + D AIVT I GTTRDV+ + + Y I DTAG+RET+D+VE EGI+R + Sbjct: 234 ALLQTDAAIVTPIAGTTRDVIESPIRIGPYAALIYDTAGLRETEDVVESEGIRRAKARGQ 293 Query: 298 NADL-ILLLKEINSKKEISFPKNIDFIFIGTKSD---------LYSTYTEEYDHLI-SSF 346 +ADL + +L ++ +++S ++ D++ + KSD L S Y ++ L +S Sbjct: 294 SADLRLWVLDASDAPEDLSAMQSGDYLIL-NKSDQVSSQALAALRSQYEDKKVRLFETSL 352 Query: 347 T-GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDII 405 T GEG++ + ++ L F + +RH L + L+ A L +++ Sbjct: 353 TKGEGIDAVRRALEVDLEAALSLSTFPAATRERHSERLREVDAALDRA-LGIGFATPELM 411 Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 AE++R A + + G DVEQ+LD IFS FCIGK Sbjct: 412 AEDIRQALSAFDALFGRTDVEQVLDHIFSSFCIGK 446 >gi|170739706|ref|YP_001768361.1| tRNA modification GTPase TrmE [Methylobacterium sp. 4-46] gi|205415797|sp|B0UJI9|MNME_METS4 RecName: Full=tRNA modification GTPase mnmE gi|168193980|gb|ACA15927.1| tRNA modification GTPase TrmE [Methylobacterium sp. 4-46] Length = 437 Score = 305 bits (780), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 172/440 (39%), Positives = 257/440 (58%), Gaps = 10/440 (2%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD-GRILDKG 64 +TIFA ++G +A+++IR+SGP + P PR+ SLR G +LD+ Sbjct: 3 DTIFAPASGFGRAAVAVIRISGPGAASCLTALTGHPPPLPRRLSLRQLRDPGTGEVLDRA 62 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 L++ P P +FTGEDSAE H+HGG AV +L L ++P L A PG F+RRAF NG++D Sbjct: 63 LVVWLPGPATFTGEDSAELHLHGGAAVRAAVLRVLGRLPGLAPAEPGAFTRRAFLNGRMD 122 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L E LADLI +ETE QRR +M + G L L W D L + + EA LDFS+E DV Sbjct: 123 LTAVEGLADLIDAETEAQRRQAMRQLDGALGRLVEAWRDTLLGVLAGAEAALDFSDEGDV 182 Query: 185 -QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 ++ S L +++ I + +++G+ GE +R G+ +V+ G NAGKS+L NALA+++ Sbjct: 183 DESALSASGLAAAARVRDAILAALAEGRRGERLREGFVVVLAGPPNAGKSTLLNALARRE 242 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLI 302 AIV+ IPGTTRD + + DL+G V + DTAG+R E D +E EG+ R+ +E ADL+ Sbjct: 243 AAIVSPIPGTTRDAIEVRCDLDGLPVLLVDTAGLRDEGADPIEAEGMARSRRRIEEADLV 302 Query: 303 LLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH--LISSFTGEGLEELINKIKS 360 L L + + + PK + + TK DL D IS+ TGEGL L++++ + Sbjct: 303 LWL--VPPEGGAAAPKGA--LVVHTKRDLGRDPGGGVDGALAISALTGEGLAMLLDRVAA 358 Query: 361 ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKIT 420 + ++ + +R L + +L A + +++AE+LRLA +LG + Sbjct: 359 AAGAALGRG-DAVVTRERQRRALEECAAHLGRAIAGAETMPAELVAEDLRLAVRALGAVA 417 Query: 421 GCVDVEQLLDIIFSKFCIGK 440 G V VE++LD +FS FCIGK Sbjct: 418 GRVGVEEMLDRLFSSFCIGK 437 >gi|296445001|ref|ZP_06886962.1| tRNA modification GTPase TrmE [Methylosinus trichosporium OB3b] gi|296257422|gb|EFH04488.1| tRNA modification GTPase TrmE [Methylosinus trichosporium OB3b] Length = 435 Score = 304 bits (778), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 176/439 (40%), Positives = 263/439 (59%), Gaps = 11/439 (2%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKAS-LRYFFGLDGRILDKG 64 +TIFA+++GA +AI++IRLSGP + E + P PR A +R G +D+G Sbjct: 4 DTIFALASGAGRAAIAVIRLSGPLVSPLVEAVAGLT-PTPRFAHYVRLRDPRSGETIDRG 62 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 LL+ FP S TGED AE +HGG AV++G L ++ P LRLA PGEF+RR+F NG++D Sbjct: 63 LLLFFPVESSPTGEDYAELQIHGGRAVIDGFLTLFSETPGLRLAEPGEFARRSFANGRMD 122 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L + E LADLI +ET QRR +++ + G L W + + + +EA+LDFS+E DV Sbjct: 123 LSQVEGLADLIDAETASQRRQALQALGGGLRRRVEGWREAVICGAALVEAELDFSDEGDV 182 Query: 185 QNFSSKEVLNDILFLK-NDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 ++ E L +L + D+ Q E +R+G+ +++LG N+GKS+L NALA++D Sbjct: 183 RD--PAEQLRPLLEPQARDMEEMARQAPAAERLRDGFLVLLLGPPNSGKSTLLNALARRD 240 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303 VAIV+ IPGTTRD++ + LDL G V + DTAG+RE +D +E+ G+ RT + ADL+L Sbjct: 241 VAIVSAIPGTTRDMIEVHLDLGGLPVTLVDTAGLREAEDEIERLGVARTRARIGEADLLL 300 Query: 304 LLKEINSK--KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSI 361 L E E D + + TK+D+ + D IS+ TG GLE LI +I+ Sbjct: 301 WLSEGGETLVGEEIVAGAADSLRLATKTDIRAAGA--CDLAISAQTGLGLEALIAEIRWR 358 Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITG 421 + ++ + +RH + + L + E L+I+AE+LR A+ +LG+I G Sbjct: 359 AQRRLGDGSSAVLTRERHRRLVEEAAAALRVCL--EPGKPLEIVAEDLRAANRALGRIVG 416 Query: 422 CVDVEQLLDIIFSKFCIGK 440 VDVE +LD +F++FCIGK Sbjct: 417 SVDVEDVLDAVFAQFCIGK 435 >gi|306842823|ref|ZP_07475463.1| small GTP-binding protein [Brucella sp. BO2] gi|306287017|gb|EFM58528.1| small GTP-binding protein [Brucella sp. BO2] Length = 349 Score = 303 bits (776), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 157/347 (45%), Positives = 234/347 (67%), Gaps = 2/347 (0%) Query: 95 ILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGEL 154 +L L ++P R+A GEF+RRAF NGK+DL AE LADLI++ETE QRRL+++ SG Sbjct: 4 MLAVLGELPGCRIAEAGEFTRRAFANGKMDLTIAEGLADLIAAETEGQRRLALQVASGNQ 63 Query: 155 SSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGE 214 LY +W +L + R+FIEA+LDF++E DV S +V + LK++I HI+ GK Sbjct: 64 RKLYSEWRQRLINARAFIEAELDFADESDVPGSVSMQVWQQLSALKHEIEHHIASGKRAA 123 Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274 ++R+G +VI+G NAGKSSL N LA +DVAI+++ GTTRD+L + LDL G V ++DT Sbjct: 124 MLRDGLHVVIVGAPNAGKSSLLNFLAGRDVAIISEEAGTTRDLLEVKLDLGGIPVYVTDT 183 Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK-NIDFIFIGTKSDLYS 333 AG+RETD +VEK GI+R + ADL+L L++++ ++ K + IGTK+DL Sbjct: 184 AGLRETDSVVEKIGIERARARMAEADLVLSLEDMSEPVPVTVEKIEAETWLIGTKADLGE 243 Query: 334 TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA 393 + + + IS+ TG GLE+L++ +++ K ++ ++P+ +RH+ L T+ +E A Sbjct: 244 RASGLWKYRISTMTGSGLEQLLDALQAFAEAKIGQIEDAVPTRQRHINLLRATIEEIEKA 303 Query: 394 SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + D L++ AEN+RLAS LG+ITG VDVE++LD+IFS+FCIGK Sbjct: 304 -IEGDDLPLELRAENMRLASQFLGRITGDVDVEEILDVIFSQFCIGK 349 >gi|325185944|emb|CCA20448.1| tRNA modification GTPase GTPBP3 putative [Albugo laibachii Nc14] Length = 508 Score = 303 bits (776), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 173/461 (37%), Positives = 268/461 (58%), Gaps = 28/461 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPS---CFQVCEFICKKKKPFPRKASLRYFF-GLDGRIL 61 +TIFA+ST + + IIR+SGP C + PR A R + + L Sbjct: 50 DTIFALSTAQGRAGVGIIRVSGPDATLCVHALSKQTNQSTIAPRIAEFRKLYHPITKEHL 109 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121 D +++ FP P+SFTGED EF VHG AV++G+L+ L+ +P R+A PGEF+ RAFEN Sbjct: 110 DDAVVLHFPEPKSFTGEDVIEFQVHGSPAVISGVLQALSTVPRCRIAEPGEFTERAFENQ 169 Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS-E 180 K++L++ E+LADL+S+ETE QR ++ +SG + W +L H ++ EA +DF + Sbjct: 170 KMNLMQVEALADLLSAETESQRSQALRQLSGRIGETLEIWQKELIHCLAYTEAMIDFGDD 229 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E+DV + S +++ L++ + H++ G+ GE++RNG ++ I+G NAGKSSL N LA Sbjct: 230 EDDVTDASYTKMIERAKGLQSHMKKHLNDGRRGELLRNGIQVAIIGPPNAGKSSLLNHLA 289 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIV+ I GTTRD++ + L+L+GY V + DTAGIRETDD++EK G+ R + AD Sbjct: 290 QRPAAIVSSIAGTTRDIVRVPLNLKGYAVILCDTAGIRETDDLIEKVGVTRARECADEAD 349 Query: 301 LILLLKE----INSKKEISFPKNIDFIFIGTKSDL----------------YSTYTEEYD 340 + +L+ + +++S + I + KSDL ++ E Sbjct: 350 ICVLMVDGQLYQTEWEDLSKSWTTNTIIVCNKSDLIDDESTLRKLQRSITSRTSIPAERV 409 Query: 341 HLISSFTGEGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399 HLIS G G++ LI + +S+ + S+ + +RH HL + + YL+ N Sbjct: 410 HLISCLNGSGIDALIEALGESVQAKVSSSGDASVITRERHRQHLEKCINYLQEFIDNPHQ 469 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + AE+LR A +G+I G VDVEQ+LD+IF +FCIGK Sbjct: 470 S--EFAAEHLRRAVDGIGRILGRVDVEQVLDVIFEEFCIGK 508 >gi|47217399|emb|CAG00759.1| unnamed protein product [Tetraodon nigroviridis] Length = 470 Score = 303 bits (775), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 179/474 (37%), Positives = 261/474 (55%), Gaps = 44/474 (9%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF--PRKASLRYFFGLDGR-ILDK 63 +IFA+S+G ++++R SGP+ + PR A LR R +LD+ Sbjct: 1 SIFALSSGHGRCGVAVVRASGPASSTALRRLAGLTHTLVPPRTALLRSITDPSSREVLDR 60 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 GL+ FP+P SFTGEDS EFH+HGG AV+ +L+ L +P +R A GEF+RRAF+ GK+ Sbjct: 61 GLVFWFPAPHSFTGEDSVEFHIHGGPAVIAAVLQALGNVPGMRPAEAGEFTRRAFQAGKM 120 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 L E E L DLI +ETE QRR ++ MSGEL LY W +L + +EA +DFSE+E Sbjct: 121 GLTEVEGLGDLIHAETEAQRRQALRQMSGELGRLYQSWSQRLKRCLAHVEAFIDFSEDEL 180 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 +++ + + ++ H++ + GE +R+G ++VI G +NAGKSSL N L ++ Sbjct: 181 IEDGVLNRGMCAHACSQGEVEQHLTDERRGERLRSGVQVVIAGATNAGKSSLLNTLCQRP 240 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303 AIV+ I GTTRDV+ LD+ G+ V +SDTAG+R++ D+VE+EG++R +E ADL L Sbjct: 241 AAIVSPIAGTTRDVVETPLDIGGFPVLLSDTAGLRDSLDLVEREGVRRARERLEQADLTL 300 Query: 304 L---------------------LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD-- 340 + L+ + S +E P+ + + K+DL + E + Sbjct: 301 VVVDCALLPSHQPEAAGFLKRHLRSVLSLQE--HPERGRVLLVLNKTDLLP-HPERQNLA 357 Query: 341 ------------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS--HKRHLYHLSQT 386 LIS TGEGL++ + + S + N PS RH HL Q Sbjct: 358 RELARASGLPPVCLISCHTGEGLQDFLAALHSSVRNLCADPLAGAPSLTQARHRAHLQQC 417 Query: 387 VRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L + +D L + AE +RLA SLG+ITG V E++LDIIF FCIGK Sbjct: 418 CAALAQYQ-SYRDVDLALAAEGVRLALTSLGRITGRVGAEEILDIIFKDFCIGK 470 >gi|298293756|ref|YP_003695695.1| tRNA modification GTPase TrmE [Starkeya novella DSM 506] gi|296930267|gb|ADH91076.1| tRNA modification GTPase TrmE [Starkeya novella DSM 506] Length = 458 Score = 302 bits (774), Expect = 7e-80, Method: Compositional matrix adjust. Identities = 177/451 (39%), Positives = 260/451 (57%), Gaps = 21/451 (4%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD-GRILDK 63 ++TI AVS+G A+++IR+SGP+ + + + P PR+A L G +LD+ Sbjct: 14 RDTIAAVSSGT-GGAVAVIRISGPAAGEALVALADRL-PEPRRAMLAKLRDPSSGEVLDE 71 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 GL + FP P S TGED AE +HGG AVV +L L +P LR A GEF+RRAF NG++ Sbjct: 72 GLALWFPGPRSATGEDMAELQIHGGRAVVAAVLGALFALPGLRPAERGEFTRRAFLNGRL 131 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL +AE LADLI++ETE QRRL+ G L +W +L + IEA +DFS+EED Sbjct: 132 DLTQAEGLADLIAAETEGQRRLAFAHAFGHLGQRVEEWRRRLIRAMALIEAGIDFSDEED 191 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 V + ++ L ++ + ++ + G ++R G I I G NAGKSSL NALA ++ Sbjct: 192 VPAEARVMARPEVEALLGELDAALAD-RRGAMVREGALIAIAGLPNAGKSSLINALAARE 250 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303 +AIV+D PGTTRDVL + LDL G+ V + DTAG+RE + VE EGI+R + ADL+L Sbjct: 251 IAIVSDEPGTTRDVLEVALDLSGHKVTLVDTAGLREAEGKVEAEGIRRAHARIAEADLVL 310 Query: 304 LLKEIN------SKKEISFPKNIDFIFIGTKSDLYST------YTEEYDHLISSFTGEGL 351 + + ++ +I + + K D +T+ IS+ G GL Sbjct: 311 WVHDAAEGPPPVARPQIEAAAGAELWLVANKLDEVGAVPPTGGWTDRA-FAISAKYGTGL 369 Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLD--IIAENL 409 E LI+ + + ++ + + +RH + +L +A L E DC LD ++AE L Sbjct: 370 EALIDAVGAFVAERARGAEHPALIRERHRMSALEAAGHLRVA-LWEWDC-LDDELLAEEL 427 Query: 410 RLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 RLA +LG++TG + VE LLD++F +FCIGK Sbjct: 428 RLAGRALGRMTGTIGVEDLLDVVFREFCIGK 458 >gi|197106988|ref|YP_002132365.1| thiophene and furan oxidation protein ThdF [Phenylobacterium zucineum HLK1] gi|254811489|sp|B4RD04|MNME_PHEZH RecName: Full=tRNA modification GTPase mnmE gi|196480408|gb|ACG79936.1| thiophene and furan oxidation protein ThdF [Phenylobacterium zucineum HLK1] Length = 445 Score = 302 bits (773), Expect = 9e-80, Method: Compositional matrix adjust. Identities = 177/451 (39%), Positives = 264/451 (58%), Gaps = 24/451 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TIFA +T +A++++R+SGP Q P PR+AS+R F DG +D+ L Sbjct: 3 DTIFAPATAPGRAAVAVVRVSGPRT-QTAVRTLAGDLPEPRRASVRRLFDADGGEIDQAL 61 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 ++ FP P S+TGED+AEFHVHGG AV ++E LA + LRLA PGEF+RRAFENGK+DL Sbjct: 62 VLWFPGPGSYTGEDAAEFHVHGGTAVTGALVEALAGL-GLRLAEPGEFTRRAFENGKLDL 120 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE +ADLI SETE QRR ++E + G LS + +W + LT + EA +DF +EE Sbjct: 121 AQAEGVADLIDSETEGQRRQALEQLGGRLSQVQARWREALTEALALFEAAVDFPDEEVPA 180 Query: 186 NFSSK--EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 + +++ VL + ++ ++G E +R G++I ++G NAGKS+L NALA ++ Sbjct: 181 DVAARARPVLETLAAEIEAAAADAARG---ERVREGFRIALVGAPNAGKSTLLNALAGRE 237 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303 AIVT PGTTRDV+ + + L GY V ++DTAG+R+T D +E EG++R E ADL L Sbjct: 238 AAIVTATPGTTRDVIEVPMVLAGYKVLMADTAGLRDTADEIEAEGVRRARAWAEGADLRL 297 Query: 304 LLKEINSKKEISFPKNI---DFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINK--- 357 L + +S++ P I D I TK DL + ++ G E+ + Sbjct: 298 WLVDGSSEETPDLPAEIGEGDLCLI-TKRDLPVGNAGAWAAEVARRIGIPAAEVTARGPG 356 Query: 358 ----IKSILSNK-FKKLPFSIPSHKRHLYH---LSQTVRYLEMASLNEKDCGLDIIAENL 409 +K LS + + L P L H L++ L A +++ +++ AE++ Sbjct: 357 DMAWLKETLSERVVESLGGGEPPAATRLRHRELLAEASERLRHAIGHDEH--VELAAEDV 414 Query: 410 RLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 RLA+ +L +ITG +D E +L IF+ FCIGK Sbjct: 415 RLAARALDRITGRIDPEAVLGRIFATFCIGK 445 >gi|148251782|ref|YP_001236367.1| tRNA modification GTPase TrmE [Bradyrhizobium sp. BTAi1] gi|205829150|sp|A5E8G7|MNME_BRASB RecName: Full=tRNA modification GTPase mnmE gi|146403955|gb|ABQ32461.1| tRNA modification GTPase trmE [Bradyrhizobium sp. BTAi1] Length = 445 Score = 301 bits (772), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 178/447 (39%), Positives = 258/447 (57%), Gaps = 9/447 (2%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+ +TIFA+S+G PSAI+I+RLSG + + K P PR A+ G Sbjct: 1 MHPHDQTIFALSSGRPPSAIAIVRLSGVGAGPALQTLTGKLPP-PRLATRALLRDDRGDP 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D +++ FP P S TGED AE HVHG AV+ ++ L+ MP +R A+ GEF+RRAFEN Sbjct: 60 IDDAVVLWFPGPASATGEDVAELHVHGSRAVITTLVSLLSAMPQMRAADRGEFTRRAFEN 119 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GKIDL EAE L DLI ++T+ QRR ++ + G L W D++ + IEA +DF++ Sbjct: 120 GKIDLTEAEGLDDLIHADTDRQRRQALRQLKGLLGDKARSWRDQIIQAAALIEAGIDFAD 179 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E DV L I L +I ++ E +R+G +VI G NAGKS+L N LA Sbjct: 180 EGDVPAELIAPALAWIRQLLAEIEEVLAAQGRAERLRDGLTVVIAGPPNAGKSTLMNQLA 239 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 +++VAIV+ GTTRD++ + LDL+GY V + DTAGIR+TDD VE+EG++R AD Sbjct: 240 RREVAIVSPHAGTTRDLIEVALDLDGYPVTVIDTAGIRQTDDPVEQEGVRRARDRAAQAD 299 Query: 301 LILLLKEINSKK-------EISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEE 353 L+L L E + + I F +N + I +S S E IS+ +G G+ + Sbjct: 300 LVLWLTEDDQAELERQTDGPIWFVRNKIDLMITEQSGAISVSPESPVFAISARSGAGMSD 359 Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLAS 413 L+ + + F + + +R LS+T L S+ D G ++ AE LR+A+ Sbjct: 360 LLEALVGFARDYFGATEHGLITRERQRTWLSETAAALRR-SIAAVDLGEELAAEELRIAA 418 Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++LG++ G VDVE LLD+IF +FCIGK Sbjct: 419 LALGRLLGRVDVEDLLDVIFREFCIGK 445 >gi|220921039|ref|YP_002496340.1| tRNA modification GTPase TrmE [Methylobacterium nodulans ORS 2060] gi|219945645|gb|ACL56037.1| tRNA modification GTPase TrmE [Methylobacterium nodulans ORS 2060] Length = 434 Score = 301 bits (771), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 174/438 (39%), Positives = 258/438 (58%), Gaps = 9/438 (2%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-DGRILDKG 64 +TIFA ++G +A++++R+SGP E + ++ P PR+ SLR G ILD+ Sbjct: 3 DTIFAPASGFGRAAVAVVRISGPGAAAALEALTRQPPPPPRRLSLRTLVAPGSGEILDRA 62 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 L+ P+P +FTGEDS E +HGG AV +L LA +P L A PG F+RRAF NG++D Sbjct: 63 LVAWMPAPGTFTGEDSVELQLHGGPAVRAAVLRALAHLPGLAPAEPGAFTRRAFLNGRMD 122 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L E E LADLI +ETE QRR +M + G LS L W L + + EA LDFS+E DV Sbjct: 123 LTEVEGLADLIDAETEAQRRQAMRQLDGALSRLVEDWRATLLDVLAMTEAALDFSDEGDV 182 Query: 185 QNFS-SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 + + L +++ I S ++ G+ GE +R G +V+ G NAGKS+L NALA++D Sbjct: 183 DAETLTTAGLAAATRVRDGILSALANGRRGERLREGLMVVLAGAPNAGKSTLLNALARRD 242 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303 AIV+ IPGTTRD + + DL G V + DTAG+RE+ D +E EG+ R+ + +ADL+L Sbjct: 243 AAIVSAIPGTTRDAIEVRCDLGGLPVMLVDTAGLRESVDAIEVEGMARSRRRIADADLVL 302 Query: 304 LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL-ISSFTGEGLEELINKIKSIL 362 L E + P + + TK+DL S D L IS+ TG+GL+ L+++I+ Sbjct: 303 WLVPPEGSGE-TPPAGA--LVVRTKADLSS--PSPGDGLAISALTGQGLDALLDRIEVSA 357 Query: 363 SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGC 422 + ++ + +R L +L+ A +++AE+LRLA +LG++ G Sbjct: 358 QAALGQ-GDAVVTRERQRLALESCAEHLDRAIAGAASLPAELVAEDLRLAVRALGEVAGR 416 Query: 423 VDVEQLLDIIFSKFCIGK 440 V VE++LD +F+ FCIGK Sbjct: 417 VGVEEMLDRLFASFCIGK 434 >gi|182678268|ref|YP_001832414.1| tRNA modification GTPase TrmE [Beijerinckia indica subsp. indica ATCC 9039] gi|205829118|sp|B2IJQ3|MNME_BEII9 RecName: Full=tRNA modification GTPase mnmE gi|182634151|gb|ACB94925.1| tRNA modification GTPase TrmE [Beijerinckia indica subsp. indica ATCC 9039] Length = 451 Score = 300 bits (769), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 174/441 (39%), Positives = 257/441 (58%), Gaps = 14/441 (3%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSC---FQVCEFICKKKKPFPRKASLRYFFGLD-GRIL 61 ETIFA ++G SA++I+R+SGP C P PR+A+L + G L Sbjct: 19 ETIFAPASGQGRSAVAIVRVSGPKAGFLLGALAGYC----PEPRRATLAILHDPENGEAL 74 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121 D+ L++ FP P+SFTGED AEFHVHGG AV+ G+L L + +R A PGEF+RRA NG Sbjct: 75 DEALVLWFPGPKSFTGEDCAEFHVHGGRAVMAGLLAALGRFEQVRPAEPGEFTRRALLNG 134 Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181 K+DL E E LAD+I +ETE QRR ++ M G LS W L S EA++DFS+E Sbjct: 135 KLDLAEVEGLADMIEAETEWQRRQALRQMRGALSRQAEMWRQALLEALSLAEAEIDFSDE 194 Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 DV +S+ V I + D+ + + Q + GE IR G IVI+G NAGKS+L NALA+ Sbjct: 195 ADVPPETSRRVAALIEPVLADLRAELGQARAGERIREGLSIVIMGPPNAGKSTLLNALAR 254 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 ++VAIV++I GTTRD++ + LDL+G V ++DTAG+R+ D +E+ GI R + ADL Sbjct: 255 REVAIVSEIAGTTRDLIEVHLDLKGCAVVLTDTAGLRDNADKIEQIGIARAYERGREADL 314 Query: 302 ILLLKEINSKKEISFPKNI--DFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIK 359 +L L E ++ ++ P+N+ + + TK+D IS+ +G L L+ I Sbjct: 315 VLWLSE--AEAPVAPPENLGMEVWPVFTKADRVEPLENREGLAISATSGLHLGRLVEAIA 372 Query: 360 SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKI 419 + + RH + L+ + E ++++AE+LRLA+ +L + Sbjct: 373 DFAGKLAPSGHAGLITRARHRQAFERAAAALDR-CIREASP-VELLAEDLRLAAQALLSL 430 Query: 420 TGCVDVEQLLDIIFSKFCIGK 440 TG ++ E++L IF++FCIGK Sbjct: 431 TGRIETEEILGEIFARFCIGK 451 >gi|157104146|ref|XP_001648272.1| GTP binding protein (mitochondrial), putative [Aedes aegypti] gi|108880387|gb|EAT44612.1| GTP binding protein (mitochondrial), putative [Aedes aegypti] Length = 493 Score = 300 bits (768), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 187/478 (39%), Positives = 282/478 (58%), Gaps = 47/478 (9%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFF-GLDGRILD 62 + TIF +S+G+ ++++R+SG +C V + + P PRKA LR F ++D Sbjct: 21 RPTIFGLSSGSGKCGVAVVRVSGDACRDVMKIKTQSVTLPEPRKAVLRRIFHSKTTEMID 80 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 KGL++ FP P SFTGEDS EFHVHGG+AVV+ + + L + +RLA PGEF++RAF GK Sbjct: 81 KGLVLWFPGPNSFTGEDSVEFHVHGGVAVVSAMYDSLGSIDGVRLAEPGEFTKRAFYAGK 140 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 +DL E E LADLI +ETE QR+ +M +GELS +Y + ++L + IEA +DF+E++ Sbjct: 141 MDLTEVEGLADLIEAETEAQRKQAMLQANGELSKVYNELRNRLLRCIANIEAYIDFAEDQ 200 Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 DV + + V D+ + D+ +H++ + GE +R+G + VI+G N GKSS N L+ + Sbjct: 201 DVGDDVFESVKTDVASIIVDVKAHLNDQRRGERLRSGVRTVIIGAPNVGKSSFVNLLSNR 260 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADL 301 V+IVT++ GTTRD++ D+ GY V ++DTAG+R ET DI+E EGI R + AD Sbjct: 261 KVSIVTNVAGTTRDIIESHHDIGGYPVILADTAGLRKETSDIIEHEGITRAKDYLTEADF 320 Query: 302 ILLLKEI--------NSKKE-----------ISFPKNI----DFIFIGTKSDLYSTYTEE 338 I+L+ + +SKK+ + F +NI + + I K DL S EE Sbjct: 321 IVLIVDAGNLQSYLKSSKKQFDDYLDHYVTSLGFKENIIRDSNCMIIINKVDLLS---EE 377 Query: 339 YDH---------LISSFTGEGLEELINKI----KSILSNKFKKLPFSIPSHKRHLYHLSQ 385 + + ++S TGEGL+ ++ KI K + N ++ P S +R+ +HL Sbjct: 378 FRNAIDRTKNLSMLSCQTGEGLQNVLEKITENLKHLCGNPCRESPN--ISQQRYRHHLKA 435 Query: 386 TVRYLE--MASLNE-KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++YLE A L+ + L I + LR A +G ITG VD E++LD+IF FCIGK Sbjct: 436 CIQYLEKYYAYLSHGPNPDLAIATQYLRNAVRCIGMITGNVDTEEILDVIFRTFCIGK 493 >gi|91076116|ref|XP_969524.1| PREDICTED: similar to GTP binding protein (mitochondrial), putative [Tribolium castaneum] gi|270014577|gb|EFA11025.1| hypothetical protein TcasGA2_TC004613 [Tribolium castaneum] Length = 479 Score = 300 bits (768), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 189/473 (39%), Positives = 267/473 (56%), Gaps = 44/473 (9%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYF-FGLDGRILD 62 ++ TI+A+S+G +++IR+SG S + + P PR A LR +LD Sbjct: 15 KQSTIYALSSGQGKCGVAVIRVSGASTELALKCLTGLTNPKPRTAILRSIKHPSSHEVLD 74 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 KGL++ FP P SFTGEDS EFHVHGGIAVV+ +L L +P+ RLA PGEF+RRAF N K Sbjct: 75 KGLVLWFPGPHSFTGEDSCEFHVHGGIAVVSSVLNALGSLPDCRLAEPGEFTRRAFHNAK 134 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 +DL E E LADL+ +ETE+QR+ + G LS LY +W L + +EA +DF E E Sbjct: 135 LDLTEVEGLADLLQAETEIQRKQAFLQTQGALSKLYNRWRGSLIKSVAHVEAHIDFEETE 194 Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 + V+ +I ++++I H++ G+ GE++R G K VILG N GKSSL N L K+ Sbjct: 195 TIDEGVLDLVVQEIQIMRDEIRKHLNDGRKGELLRTGVKTVILGAPNVGKSSLMNLLCKR 254 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADL 301 AIVT I GTTRD+L + L++ GY + ++DTAG+R ET+DI+EKEGI R + ADL Sbjct: 255 PAAIVTPIEGTTRDILEVTLNIGGYPLVLTDTAGLRSETNDIIEKEGIIRAKNSYDCADL 314 Query: 302 ILLLKEINSKKEISF-----PK-------------------NIDFIFIGTKSDLYSTYTE 337 ++L+ ++S K S+ P N + + + KSDL + Sbjct: 315 VILV--LDSLKVYSWLHNHPPSSTSDYLKCYIEKLGLYDLINKECVIVFNKSDLVQDLLD 372 Query: 338 ----EYDHLISSFTGEGLEELINKIKSILSNKFKKL----PFSIPS--HKRHLYHLSQTV 387 E HL S + +G+ L+N I NK +KL PS RH HLS + Sbjct: 373 LQNSEIVHL-SCKSEDGVSNLVNTI----GNKLRKLCGEPSAEHPSMNQVRHRQHLSNCL 427 Query: 388 RYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + L+ + + ++AE+LR A LG + G EQLLD+IF FCIGK Sbjct: 428 KCLDSSLDRSSSDTV-LMAEHLRKALRHLGYLVGATTTEQLLDVIFKDFCIGK 479 >gi|254418996|ref|ZP_05032720.1| tRNA modification GTPase TrmE [Brevundimonas sp. BAL3] gi|196185173|gb|EDX80149.1| tRNA modification GTPase TrmE [Brevundimonas sp. BAL3] Length = 436 Score = 300 bits (768), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 173/442 (39%), Positives = 266/442 (60%), Gaps = 14/442 (3%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64 ++TIFA++T AI+++RLSGP + + PR AS+R G +D+ Sbjct: 3 QDTIFALATPPGRGAIAVMRLSGPGVDAALTALGATRLK-PRMASVRDL-AYAGDHIDQA 60 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 L++ F +P S+TGEDSAE H+HGG AVV L + +R A PGEF+RRAF+NG++D Sbjct: 61 LVLRFVAPHSYTGEDSAELHLHGGRAVVEAASGALIAL-GVRPAEPGEFTRRAFQNGRMD 119 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ADLI +ET Q R ++ + G+LS Y + L H + +EA++DF +E+ Sbjct: 120 LAQAEAVADLIDAETAAQARQALGQLDGKLSETYAGFRRDLLHALALVEAEIDFPDEDVP 179 Query: 185 QNFS--SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 N + + VL+ L D+ + G+ GE +R+GY+IV++G +NAGKSSLFNAL ++ Sbjct: 180 DNLARTAGPVLD---RLAEDLRRAVDTGRRGERVRDGYRIVLIGETNAGKSSLFNALVER 236 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 + AIVT I GTTRDVL DL + GY V +SDTAG+RE+ D VE EG++R + E ADL Sbjct: 237 EAAIVTPIAGTTRDVLDADLVIGGYAVTLSDTAGLRESADPVEAEGVRRARMRAEQADLR 296 Query: 303 LLLKEINSKKEI--SFPKNIDFIFIGTKSDL-YSTYTEEYDHL-ISSFTGEGLEELINKI 358 L ++ + ++ + D + + K+DL S + +D + +SS +GEGL L + I Sbjct: 297 LWVRAPGDPDGVAAAYARPGDLV-VANKADLGGSVPSGGFDRIEVSSRSGEGLLLLRDWI 355 Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGK 418 + L+ F + +RH L++ + +E A D G ++ E+LR A+ +L + Sbjct: 356 ATRLAQDLSGADFPAVTRERHRLRLNEALEAVE-AGRRALDAGPEMAGEDLRRAAEALSR 414 Query: 419 ITGCVDVEQLLDIIFSKFCIGK 440 +TG + VE +L +FS FCIGK Sbjct: 415 VTGAIGVEDILGEVFSTFCIGK 436 >gi|254488767|ref|ZP_05101972.1| tRNA modification GTPase TrmE [Roseobacter sp. GAI101] gi|214045636|gb|EEB86274.1| tRNA modification GTPase TrmE [Roseobacter sp. GAI101] Length = 428 Score = 299 bits (765), Expect = 7e-79, Method: Compositional matrix adjust. Identities = 171/440 (38%), Positives = 256/440 (58%), Gaps = 18/440 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP--RKASLRYFFGLDGRILDK 63 +TIFA +T + + ++R+SGP F + E I P P R+A++R G DG ++D Sbjct: 2 DTIFAQATAQGRAGVCVVRISGPQAFDIAEKIAF---PLPEVRQAAVRPIIGQDGGVIDS 58 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 L++ F P SFTGED E H+HG IAVV +L L+ P+ RLA PGEF+RRA ENGK+ Sbjct: 59 ALVLTFKGPSSFTGEDVVELHLHGSIAVVRAVLALLSTFPDTRLAEPGEFTRRAMENGKL 118 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL + E L DLI +ETE QR+ ++ +SG L W +KL + +E +DF+ +ED Sbjct: 119 DLTQVEGLGDLIEAETEAQRKQALRVLSGHLGQRVDAWREKLIRAAALLEVTIDFA-DED 177 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 V S EV + + +D+ I+ E IR G+++ I+G NAGKS+L NALA +D Sbjct: 178 VPVDVSPEVRGLLRDVNDDLLKEIAGTHTAERIRTGFEVAIIGRPNAGKSTLLNALAGRD 237 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303 AI + + GTTRDV+ + +DL G V + DTAG+R+ D VE GI+R +ADL + Sbjct: 238 AAITSAVAGTTRDVIEVRMDLGGLPVTLLDTAGLRDGADEVEAIGIERALKRAADADLRI 297 Query: 304 LLKEINSKKEI-SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362 L E + + + P++ I + K+DL + + IS TG+G+ +LI+ +++IL Sbjct: 298 FLVEDDEDLPVAALPED---IRMRPKADLR----DSAEGAISGTTGQGVSQLISTVQAIL 350 Query: 363 SNKFKKLPFSIPSHKRHLYHLSQTVRYL--EMASLNEKDCGLDIIAENLRLASVSLGKIT 420 + L + +H+RH L + L M+ L+ DI +E LR + +L + Sbjct: 351 GA--RSLTAGLATHERHRVALQKAADGLSVSMSVLDHGPDQYDIASEELRHSIRALEALV 408 Query: 421 GCVDVEQLLDIIFSKFCIGK 440 G +DVE LLD+IFS FC+GK Sbjct: 409 GRIDVENLLDVIFSSFCLGK 428 >gi|17939531|gb|AAH19261.1| GTP binding protein 3 (mitochondrial) [Homo sapiens] gi|123982804|gb|ABM83143.1| GTP binding protein 3 (mitochondrial) [synthetic construct] gi|123997475|gb|ABM86339.1| GTP binding protein 3 (mitochondrial) [synthetic construct] Length = 492 Score = 298 bits (764), Expect = 8e-79, Method: Compositional matrix adjust. Identities = 177/464 (38%), Positives = 260/464 (56%), Gaps = 36/464 (7%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFF-GLDGRILDKG 64 TIFA+S+G I++IR SGP+ + + P R ASLR G LD+ Sbjct: 35 TIFALSSGQGRCGIAVIRTSGPASGHALRILTAPRDLPLARHASLRLLSDPRSGEPLDRA 94 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 L++ FP P+SFTGED EFHVHGG AVV+G+L+ L +P LR A GEF+RRAF NGK++ Sbjct: 95 LVLWFPGPQSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFANGKLN 154 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L E E LADLI +ETE QRR ++ + GEL L W + LT + +EA +DF E++++ Sbjct: 155 LTEVEGLADLIHAETEAQRRQALRQLDGELGHLCRGWAETLTKALAHVEAYIDFGEDDNL 214 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + ++ ++ L+ + +H+ + G+ +R+G +V+ G NAGKSSL N L++K V Sbjct: 215 EEGVLEQADIEVRALQVALGAHLRDARRGQRLRSGVHVVVTGPPNAGKSSLVNLLSRKPV 274 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 +IV+ PGTTRDVL +DL G+ V +SDTAG+RE VE+EG++R +E ADLIL Sbjct: 275 SIVSPEPGTTRDVLETPVDLAGFPVLLSDTAGLREGVGPVEQEGVRRARERLEQADLILA 334 Query: 305 LKEINSKKEISFPKNIDF--------------------IFIGTKSDLYSTYTEEYDH--- 341 + + + +++ P + +F + + KSDL S Sbjct: 335 MLDAS---DLASPSSCNFLATVVASVGAQSPSDSSQHLLLVLNKSDLLSPEGPGPGPDLP 391 Query: 342 ---LISSFTGEGLEELINKIKSILSNKFKKLPFSIP--SHKRHLYHLSQTVRYLEMASLN 396 L+S TGEGL+ L+ ++ L+ P + RH +HL + L Sbjct: 392 PHLLLSCLTGEGLDGLLEALRKELAAVCGDPSTDPPLLTRARHQHHLQGCLDALGHYK-Q 450 Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 KD L + AE LR+A L ++TG E++LDIIF FC+GK Sbjct: 451 SKD--LALAAEALRVARGHLTRLTGGGGTEEILDIIFQDFCVGK 492 >gi|126734408|ref|ZP_01750155.1| tRNA modification GTPase [Roseobacter sp. CCS2] gi|126717274|gb|EBA14138.1| tRNA modification GTPase [Roseobacter sp. CCS2] Length = 426 Score = 298 bits (764), Expect = 9e-79, Method: Compositional matrix adjust. Identities = 169/439 (38%), Positives = 258/439 (58%), Gaps = 18/439 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TIFA++T S ++I+R+SGP Q + P +R G +LD+ L Sbjct: 2 DTIFALATAQGRSGVAIVRISGPFAVQATSRLAGS---VPDARGVRQLRDARGELLDQAL 58 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 ++ FP+ +SFTGE E H+HG AVV+ +L L MP LR A GEF+RRA ENG+++L Sbjct: 59 ILRFPNGQSFTGEVVVELHLHGSPAVVHAVLRCLGDMPELRQAEAGEFTRRALENGRLNL 118 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 E E LADLI +ETE QR+ ++ SG L L W +L + +EA +DF++EE Sbjct: 119 AEVEGLADLIDAETESQRKQAVRVFSGALGELADSWRVRLIRAAALLEATIDFADEEVPV 178 Query: 186 NFSSKEVLNDIL-FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + S + +ND+L ++ ++ ++ E +R+G+++ I+G N GKS+L N LA +DV Sbjct: 179 DVSPE--VNDLLAHVRQEMVREADGVRVAERVRDGFEVAIIGAPNVGKSTLLNRLAGRDV 236 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AI +++ GTTRDV+ + +DL+G V + DTAG+RETDD+VE G+ R E AD + Sbjct: 237 AITSEVAGTTRDVIEVQMDLDGLPVTLLDTAGVRETDDVVEGLGVARALERAERADFRIH 296 Query: 305 LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL-ISSFTGEGLEELINKIKSILS 363 L + + + S P D + + KSDL+ + D + +S TG+G++++I ++ L Sbjct: 297 L--LMAPNDTSAPSGPDDLIVQAKSDLH-----DGDGMAVSGKTGDGIDQMIARVSGRLQ 349 Query: 364 NKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDIIAENLRLASVSLGKITG 421 K ++ I +RH L V YL+ A+L + D D+IAE+LR A ++ I G Sbjct: 350 EKVGQI--GIAMRERHRVALVGAVGYLDDATAALGQSDMMTDLIAEDLRSAIRAVDSIVG 407 Query: 422 CVDVEQLLDIIFSKFCIGK 440 VDVE +LD IFS FCIGK Sbjct: 408 RVDVEHVLDEIFSSFCIGK 426 >gi|193082991|ref|NP_116009.2| tRNA modification GTPase GTPBP3, mitochondrial isoform V [Homo sapiens] gi|313104112|sp|Q969Y2|GTPB3_HUMAN RecName: Full=tRNA modification GTPase GTPBP3, mitochondrial; AltName: Full=GTP-binding protein 3; AltName: Full=Mitochondrial GTP-binding protein 1; Flags: Precursor gi|13650157|gb|AAK37568.1| mitochondrial GTP-binding protein 1 [Homo sapiens] Length = 492 Score = 298 bits (764), Expect = 9e-79, Method: Compositional matrix adjust. Identities = 177/464 (38%), Positives = 260/464 (56%), Gaps = 36/464 (7%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFF-GLDGRILDKG 64 TIFA+S+G I++IR SGP+ + + P R ASLR G LD+ Sbjct: 35 TIFALSSGQGRCGIAVIRTSGPASGHALRILTAPRDLPLARHASLRLLSDPRSGEPLDRA 94 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 L++ FP P+SFTGED EFHVHGG AVV+G+L+ L +P LR A GEF+RRAF NGK++ Sbjct: 95 LVLWFPGPQSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFANGKLN 154 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L E E LADLI +ETE QRR ++ + GEL L W + LT + +EA +DF E++++ Sbjct: 155 LTEVEGLADLIHAETEAQRRQALRQLDGELGHLCRGWAETLTKALAHVEAYIDFGEDDNL 214 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + ++ ++ L+ + +H+ + G+ +R+G +V+ G NAGKSSL N L++K V Sbjct: 215 EEGVLEQADIEVRALQVALGAHLRDARRGQRLRSGVHVVVTGPPNAGKSSLVNLLSRKPV 274 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 +IV+ PGTTRDVL +DL G+ V +SDTAG+RE VE+EG++R +E ADLIL Sbjct: 275 SIVSPEPGTTRDVLETPVDLAGFPVLLSDTAGLREGVGPVEQEGVRRARERLEQADLILA 334 Query: 305 LKEINSKKEISFPKNIDF--------------------IFIGTKSDLYSTYTEEYDH--- 341 + + + +++ P + +F + + KSDL S Sbjct: 335 MLDAS---DLASPSSCNFLATVVASVGAQSPSDSSQRLLLVLNKSDLLSPEGPGPGPDLP 391 Query: 342 ---LISSFTGEGLEELINKIKSILSNKFKKLPFSIP--SHKRHLYHLSQTVRYLEMASLN 396 L+S TGEGL+ L+ ++ L+ P + RH +HL + L Sbjct: 392 PHLLLSCLTGEGLDGLLEALRKELAAVCGDPSTDPPLLTRARHQHHLQGCLDALGHYK-Q 450 Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 KD L + AE LR+A L ++TG E++LDIIF FC+GK Sbjct: 451 SKD--LALAAEALRVARGHLTRLTGGGGTEEILDIIFQDFCVGK 492 >gi|154245777|ref|YP_001416735.1| tRNA modification GTPase TrmE [Xanthobacter autotrophicus Py2] gi|154159862|gb|ABS67078.1| small GTP-binding protein [Xanthobacter autotrophicus Py2] Length = 431 Score = 298 bits (763), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 172/444 (38%), Positives = 260/444 (58%), Gaps = 24/444 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD---GRILD 62 +T+FA+S+G LP+ ++++R+SGP +C P PR A RY D G LD Sbjct: 3 DTLFALSSGRLPAGVAVLRISGPEAAAAVLALCGVLPP-PRVA--RYGALSDPRTGETLD 59 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 +GL++ FP P S TGED AE H+HGG AVV +L L+ +P LR A GEF+RRA NGK Sbjct: 60 RGLILFFPGPASATGEDVAELHLHGGRAVVAAVLRALSALPGLRPAEAGEFTRRAHANGK 119 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 +DL E E LADL+++E+E QR+ ++ SG LS +W L + IEA +DFS+E Sbjct: 120 LDLAEVEGLADLVAAESEAQRKQALALASGALSRRVEEWRVGLVSALALIEAGIDFSDES 179 Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 DV + + + + LK ++ + ++ GE +R+G + I G NAGKS+L N LA + Sbjct: 180 DVSGEVTMDAVARLARLKEELLAALTDAARGERVRDGLVVAISGPPNAGKSTLLNRLAGR 239 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 + AIV+ +PGTTRDVL + L+L G V + DTAG+RET D+VE EG++R E AD++ Sbjct: 240 EAAIVSALPGTTRDVLEVHLELAGQAVTLLDTAGLRETSDLVEAEGVRRALARAEGADVV 299 Query: 303 LLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362 L L + S+ P + + TK D + + IS+ +G G++ L+++++ Sbjct: 300 LWLCDTGSQPP---PALAHAVKVRTKIDRDAAIPLGWIG-ISAASGAGVDTLVSRLEQEA 355 Query: 363 SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCG-----LDIIAENLRLASVSL 416 + P I ++ R LE+A+L+ E+ G ++ AE++RLA +L Sbjct: 356 DRLGGREPALITRERQR--------RALEVATLHLERALGDFGGHEELRAEDVRLAVRAL 407 Query: 417 GKITGCVDVEQLLDIIFSKFCIGK 440 ++ G VDVE +LD +FS FCIGK Sbjct: 408 DQLIGRVDVEDVLDALFSTFCIGK 431 >gi|13786071|gb|AAK39555.1| mitochondrial GTP binding protein 1 [Homo sapiens] gi|14042398|dbj|BAB55228.1| unnamed protein product [Homo sapiens] gi|16877978|gb|AAH17207.1| GTP binding protein 3 (mitochondrial) [Homo sapiens] gi|19335745|gb|AAL85493.1| GTP-binding protein isoform V [Homo sapiens] gi|119605003|gb|EAW84597.1| GTP binding protein 3 (mitochondrial), isoform CRA_a [Homo sapiens] gi|158257290|dbj|BAF84618.1| unnamed protein product [Homo sapiens] Length = 492 Score = 298 bits (763), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 177/464 (38%), Positives = 260/464 (56%), Gaps = 36/464 (7%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFF-GLDGRILDKG 64 TIFA+S+G I++IR SGP+ + + P R ASLR G LD+ Sbjct: 35 TIFALSSGQGRCGIAVIRTSGPASGHALRILTAPRDLPLARHASLRLLSDPRSGEPLDRA 94 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 L++ FP P+SFTGED EFHVHGG AVV+G+L+ L +P LR A GEF+RRAF NGK++ Sbjct: 95 LVLWFPGPQSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFANGKLN 154 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L E E LADLI +ETE QRR ++ + GEL L W + LT + +EA +DF E++++ Sbjct: 155 LTEVEGLADLIHAETEAQRRQALRQLDGELGHLCRGWAETLTKALAHVEAYIDFGEDDNL 214 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + ++ ++ L+ + +H+ + G+ +R+G +V+ G NAGKSSL N L++K V Sbjct: 215 EEGVLEQADIEVRALQVALGAHLRDARRGQRLRSGAHVVVTGPPNAGKSSLVNLLSRKPV 274 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 +IV+ PGTTRDVL +DL G+ V +SDTAG+RE VE+EG++R +E ADLIL Sbjct: 275 SIVSPEPGTTRDVLETPVDLAGFPVLLSDTAGLREGVGPVEQEGVRRARERLEQADLILA 334 Query: 305 LKEINSKKEISFPKNIDF--------------------IFIGTKSDLYSTYTEEYDH--- 341 + + + +++ P + +F + + KSDL S Sbjct: 335 MLDAS---DLASPSSCNFLATVVASVGAQSPSDSSQRLLLVLNKSDLLSPEGPGPGPDLP 391 Query: 342 ---LISSFTGEGLEELINKIKSILSNKFKKLPFSIP--SHKRHLYHLSQTVRYLEMASLN 396 L+S TGEGL+ L+ ++ L+ P + RH +HL + L Sbjct: 392 PHLLLSCLTGEGLDGLLEALRKELAAVCGDPSTDPPLLTRARHQHHLQGCLDALGHYK-Q 450 Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 KD L + AE LR+A L ++TG E++LDIIF FC+GK Sbjct: 451 SKD--LALAAEALRVARGHLTRLTGGGGTEEILDIIFQDFCVGK 492 >gi|158301166|ref|XP_320903.3| AGAP002133-PA [Anopheles gambiae str. PEST] gi|157012341|gb|EAA00934.3| AGAP002133-PA [Anopheles gambiae str. PEST] Length = 486 Score = 298 bits (763), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 179/467 (38%), Positives = 271/467 (58%), Gaps = 33/467 (7%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASL-RYFFGLDGRILDKG 64 TIF +S+G +++IR+SG + + + + K P PR+A L + F G ++D+G Sbjct: 20 TIFGLSSGFGKCGVAVIRVSGSASRAIVDKKTRLKSFPEPRRAVLTKIFHGQTNAMIDRG 79 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 LL+ FP P+SFTGED+ EFHVHGG A+V+ + + LA P+ R+A PGEF++RAF GK+D Sbjct: 80 LLLWFPGPQSFTGEDTIEFHVHGGTAIVSAMYDSLATFPDTRIAEPGEFTKRAFYAGKMD 139 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L E E LADLI +ETE QR+ ++ +G+LSS Y +L + IEA +DF+E++DV Sbjct: 140 LTEVEGLADLIHAETEAQRKQALRQANGQLSSFYNDLRTQLVQAIASIEAYIDFAEDQDV 199 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + + +I + +H++ + GE +RNG + I+G N GKSSL N L++++V Sbjct: 200 DDNVLSVAVQNIEGAIGQLKAHLNDNRRGERLRNGVRTAIVGAPNVGKSSLINLLSQRNV 259 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEVENADLIL 303 +IVT I GTTRD++ D+ GY V + DTAG+R+ T+D+VE EGI R VE+ADL+L Sbjct: 260 SIVTSIAGTTRDIVESHYDIGGYPVILGDTAGLRQGTEDVVESEGIARARAYVESADLLL 319 Query: 304 LLKEINSKKEI------------SFPKNIDF----IFIGTKSDLYSTYTEEY--DH---- 341 L+ + + + + + + D + + K DL ++ T E H Sbjct: 320 LVVDASRVETVDRLDTYLREYMETLGLDADMMSRALIVLNKCDLLTSGTWERLSAHNNSF 379 Query: 342 -LISSFTGEGLEELINKIKSILSNKFKKLPFSIP--SHKRHLYHLSQTVRYLEMASLNEK 398 +S T GL EL+ ++K+ L P S +RH YHL Q + LE Sbjct: 380 SFLSCQTQSGLPELLERLKTRLVQLCGDPSVESPTISQERHRYHLKQCLACLEQFRDYFH 439 Query: 399 DCG-----LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + G L I+ +LR A +GKITG V+ +++LD+IFS FCIGK Sbjct: 440 ETGAPNRDLAIVTHHLRNAVRCIGKITGTVETDEILDVIFSTFCIGK 486 >gi|163732963|ref|ZP_02140407.1| tRNA modification GTPase TrmE [Roseobacter litoralis Och 149] gi|161393498|gb|EDQ17823.1| tRNA modification GTPase TrmE [Roseobacter litoralis Och 149] Length = 428 Score = 298 bits (763), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 176/441 (39%), Positives = 262/441 (59%), Gaps = 20/441 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +T+FA+++ + +S+IR+SG + + V E +C P PRK+++R+ DG ++D+ L Sbjct: 2 DTVFALASAQGRAGVSVIRISGHTAWAVAEHLCGAL-PEPRKSAVRFIRSQDGTVIDQAL 60 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 ++ F P SFTGED EFHVHG IAVV IL EL+ + R+A GEF+RRA ENGK+DL Sbjct: 61 VLAFKGPHSFTGEDVVEFHVHGSIAVVRAILAELSDQGSARMAEAGEFTRRALENGKLDL 120 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 + E LADLI +ETE QR+ ++ ++G L W KL + IEA +DF+ +EDV Sbjct: 121 SQVEGLADLIDAETEAQRKQAVRVLTGSLGDKVEIWRTKLIRAAALIEATIDFA-DEDVP 179 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 + EV + + + DI S I+ + E IR+G+++ ++G NAGKS+L N L+ +D A Sbjct: 180 VDVTPEVTSLLKDVSCDIESEIAGTHVAERIRSGFEVALVGAPNAGKSTLLNKLSGRDAA 239 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 I ++I GTTRDV+ + +DL G V DTAG+R++ D +EK GI+R +ADL + L Sbjct: 240 ITSEIAGTTRDVIEVRMDLGGLPVTFLDTAGLRQSTDEIEKIGIERAIARARDADLRVFL 299 Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365 + S+K + P D I K DL E D IS TG+G+ EL+ KI +I + Sbjct: 300 SK-PSEKLLIDPVEDDIQLI-PKVDLLP----ETDLGISGKTGQGIPELLEKIGTIFGKR 353 Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL------DIIAENLRLASVSLGKI 419 + + +H+RH + + + ++ L+ N D L DI A+ LR A SL + Sbjct: 354 VSGV--GLATHERHRFAMQRALKDLD----NSFDALLRGPEFYDITAQELRSAIRSLETL 407 Query: 420 TGCVDVEQLLDIIFSKFCIGK 440 G +D E LLD IFS FC+GK Sbjct: 408 VGRIDAENLLDEIFSSFCLGK 428 >gi|221042034|dbj|BAH12694.1| unnamed protein product [Homo sapiens] Length = 514 Score = 298 bits (762), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 177/464 (38%), Positives = 260/464 (56%), Gaps = 36/464 (7%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFF-GLDGRILDKG 64 TIFA+S+G I++IR SGP+ + + P R ASLR G LD+ Sbjct: 57 TIFALSSGQGRCGIAVIRTSGPASGHALRILTAPRDLPLARHASLRLLSDPRSGEPLDRA 116 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 L++ FP P+SFTGED EFHVHGG AVV+G+L+ L +P LR A GEF+RRAF NGK++ Sbjct: 117 LVLWFPGPQSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFANGKLN 176 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L E E LADLI +ETE QRR ++ + GEL L W + LT + +EA +DF E++++ Sbjct: 177 LTEVEGLADLIHAETEAQRRQALRQLDGELGHLCRGWAETLTKALAHVEAYIDFGEDDNL 236 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + ++ ++ L+ + +H+ + G+ +R+G +V+ G NAGKSSL N L++K V Sbjct: 237 EEGVLEQADIEVRALQVALGAHLRDARRGQRLRSGAHVVVTGPPNAGKSSLVNLLSRKPV 296 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 +IV+ PGTTRDVL +DL G+ V +SDTAG+RE VE+EG++R +E ADLIL Sbjct: 297 SIVSPEPGTTRDVLETPVDLAGFPVLLSDTAGLREGVGPVEQEGVRRARERLEQADLILA 356 Query: 305 LKEINSKKEISFPKNIDF--------------------IFIGTKSDLYSTYTEEYDH--- 341 + + + +++ P + +F + + KSDL S Sbjct: 357 MLDAS---DLASPSSCNFLATVVASVGAQSPSDSSQRLLLVLNKSDLLSPEGPGPGPDLP 413 Query: 342 ---LISSFTGEGLEELINKIKSILSNKFKKLPFSIP--SHKRHLYHLSQTVRYLEMASLN 396 L+S TGEGL+ L+ ++ L+ P + RH +HL + L Sbjct: 414 PHLLLSCLTGEGLDGLLEALRKELAAVCGDPSTDPPLLTRARHQHHLQGCLDALGHYK-Q 472 Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 KD L + AE LR+A L ++TG E++LDIIF FC+GK Sbjct: 473 SKD--LALAAEALRVARGHLTRLTGGGGTEEILDIIFQDFCVGK 514 >gi|306518614|ref|NP_001182351.1| tRNA modification GTPase GTPBP3, mitochondrial isoform VII [Homo sapiens] Length = 514 Score = 298 bits (762), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 177/464 (38%), Positives = 260/464 (56%), Gaps = 36/464 (7%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFF-GLDGRILDKG 64 TIFA+S+G I++IR SGP+ + + P R ASLR G LD+ Sbjct: 57 TIFALSSGQGRCGIAVIRTSGPASGHALRILTAPRDLPLARHASLRLLSDPRSGEPLDRA 116 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 L++ FP P+SFTGED EFHVHGG AVV+G+L+ L +P LR A GEF+RRAF NGK++ Sbjct: 117 LVLWFPGPQSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFANGKLN 176 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L E E LADLI +ETE QRR ++ + GEL L W + LT + +EA +DF E++++ Sbjct: 177 LTEVEGLADLIHAETEAQRRQALRQLDGELGHLCRGWAETLTKALAHVEAYIDFGEDDNL 236 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + ++ ++ L+ + +H+ + G+ +R+G +V+ G NAGKSSL N L++K V Sbjct: 237 EEGVLEQADIEVRALQVALGAHLRDARRGQRLRSGVHVVVTGPPNAGKSSLVNLLSRKPV 296 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 +IV+ PGTTRDVL +DL G+ V +SDTAG+RE VE+EG++R +E ADLIL Sbjct: 297 SIVSPEPGTTRDVLETPVDLAGFPVLLSDTAGLREGVGPVEQEGVRRARERLEQADLILA 356 Query: 305 LKEINSKKEISFPKNIDF--------------------IFIGTKSDLYSTYTEEYDH--- 341 + + + +++ P + +F + + KSDL S Sbjct: 357 MLDAS---DLASPSSCNFLATVVASVGAQSPSDSSQRLLLVLNKSDLLSPEGPGPGPDLP 413 Query: 342 ---LISSFTGEGLEELINKIKSILSNKFKKLPFSIP--SHKRHLYHLSQTVRYLEMASLN 396 L+S TGEGL+ L+ ++ L+ P + RH +HL + L Sbjct: 414 PHLLLSCLTGEGLDGLLEALRKELAAVCGDPSTDPPLLTRARHQHHLQGCLDALGHYK-Q 472 Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 KD L + AE LR+A L ++TG E++LDIIF FC+GK Sbjct: 473 SKD--LALAAEALRVARGHLTRLTGGGGTEEILDIIFQDFCVGK 514 >gi|149912889|ref|ZP_01901423.1| tRNA modification GTPase TrmE, putative [Roseobacter sp. AzwK-3b] gi|149813295|gb|EDM73121.1| tRNA modification GTPase TrmE, putative [Roseobacter sp. AzwK-3b] Length = 428 Score = 297 bits (761), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 172/435 (39%), Positives = 248/435 (57%), Gaps = 8/435 (1%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI+A+ST + ++IIR+SGP F + + P PR+ASLR DG LD+ L Sbjct: 2 DTIYALSTAQGKAGVAIIRVSGPLAFGAAQALAGAV-PSPREASLRILRAPDGMRLDEAL 60 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 ++ F SFTGED EFHVHG AVV +L+ L+ + +LR A PGEF+RRA ENG +DL Sbjct: 61 VLTFAQGHSFTGEDIVEFHVHGSTAVVAAVLDALSTLDDLRPAEPGEFTRRALENGCLDL 120 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 + E LADLI +ETE QRR ++ +SG+L W L + +EA +DF+ +EDV Sbjct: 121 AQVEGLADLIDAETESQRRQALRVLSGDLGKRAETWRTSLIRAAALLEATIDFA-DEDVP 179 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S EV + + ND+ I+ E IR+G+++ I+G N GKS+L NALA +D A Sbjct: 180 VDVSPEVTELVTSVTNDLEREITGVTTAERIRSGFEVAIVGAPNVGKSTLLNALAGRDAA 239 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 I +++ GTTRDV+ + +DL G V + DTAGIRETDDIVE G++R + ADL + L Sbjct: 240 ITSEVAGTTRDVIEVRMDLGGLPVTLLDTAGIRETDDIVESIGVERALARAQAADLRVFL 299 Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365 + D I + K+DL ++ + IS TG G+ +LI +I +ILS + Sbjct: 300 --VTGGDTPDLNPEPDDIVLNAKADL----SDNPANGISGKTGLGVSDLIARITAILSKR 353 Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDV 425 + + + +A L E + DI AE +R A +L + G VD+ Sbjct: 354 ASGAGLATRLRHKQAMERGRAALQSALALLPEGEDTADITAEEIRTAIRALDSLVGRVDI 413 Query: 426 EQLLDIIFSKFCIGK 440 E +LD IF+ FC+GK Sbjct: 414 ENILDEIFASFCLGK 428 >gi|193624724|ref|XP_001945984.1| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial-like [Acyrthosiphon pisum] Length = 485 Score = 297 bits (760), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 173/472 (36%), Positives = 271/472 (57%), Gaps = 36/472 (7%) Query: 2 NHEKETIFAVSTGALPSAISIIRLSGPSCFQ-VCEFICKKKKPFPRKASLRYFFGLDGR- 59 + +K TI+A+S+G +++IR+SGP + + K P PRKA L + Sbjct: 17 SRQKSTIYALSSGLGKCGVAVIRVSGPCTSKAILNMTHLKYLPRPRKACLNKIIDPTTKE 76 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 LD GLL+ FP P+SFTGED EF VHGG AVV +L+ L+K+P+ R A+PGEF++R+F Sbjct: 77 QLDIGLLLWFPGPKSFTGEDCCEFQVHGGRAVVTSVLQGLSKLPDFRPADPGEFTKRSFY 136 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 N K+DL E E LADLI ++TE+QR+ ++ + G L LY W L +++EA +DFS Sbjct: 137 NNKMDLTEVEGLADLIEADTELQRKQALMQLEGSLRQLYDSWRQYLLENLAYVEAYIDFS 196 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 E +++++ + V ++ L +I H+ + GE++R+G K+ I+G N GKSSL N+L Sbjct: 197 ETDNIEDLVLENVKENLEKLAKEIEMHLMDNRSGELLRDGVKVAIIGAPNTGKSSLLNSL 256 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVEN 298 ++ AIVT++PGTTRD + + LD+ GY V + DTAGIR +T D++E GIK++ ++ E+ Sbjct: 257 CSREAAIVTELPGTTRDPIQVPLDVSGYSVLLIDTAGIRSQTVDLIEGLGIKKSKVQAES 316 Query: 299 ADLILLLKEINSKKEISFPKNIDFIF------IGTKSDLYSTYTEEYDHLI--------- 343 AD+++L+ + ++ NID + + D Y + D+L Sbjct: 317 ADMVILVTDAQCLLDVD---NIDLWLKKHVENLKVQCDNCLVYVNKIDNLSDDQVIRLKK 373 Query: 344 ------------SSFTGEGLEELINKIKSILSNKFKKLPFSIP--SHKRHLYHLSQTVRY 389 S EGL +++ ++ L F P S RH Y L + Sbjct: 374 VSQNSKWTLCFGSCKVNEGLMDMMRTFENCLQQLCGNPNFEHPRCSQARHRYCLLNALNN 433 Query: 390 LEM-ASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++ ++E D +D+ A++LR A++ +GKITG V E++L IFSKFCIGK Sbjct: 434 VQTYLKISESDKNIDVAAQHLRKATLYVGKITGHVSTEEVLTEIFSKFCIGK 485 >gi|149605447|ref|XP_001518750.1| PREDICTED: similar to mitochondrial GTP-binding protein 1 [Ornithorhynchus anatinus] Length = 494 Score = 297 bits (760), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 180/467 (38%), Positives = 269/467 (57%), Gaps = 36/467 (7%) Query: 5 KETIFAVSTGALPSAISIIRLSGP-SCFQVCEFICKKKKPFPRKASLRYFFGLDG-RILD 62 + TIFA+S+G +++IR SGP S + + + + P PR A+L D LD Sbjct: 33 RVTIFALSSGHGKCGVAVIRTSGPASGPALLRLMARLELPRPRTATLSLILDPDSSEPLD 92 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 +GL++ FP P SFTGED AE HVHGG AVV+G+L+ L +P LR A GEF++RAF+NGK Sbjct: 93 RGLVLWFPGPHSFTGEDCAELHVHGGPAVVSGVLQALGSLPGLRPAEAGEFTKRAFQNGK 152 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 + L E E L DLI +ETE QRR ++ ++GEL LY W + LT + + +EA +DFSE++ Sbjct: 153 LGLTEVEGLGDLIHAETEAQRRQALRQLAGELGRLYQGWSETLTRVLAHVEAYIDFSEDD 212 Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 +++ +V + L+ +I H+ + GE +R+G ++VI G +NAGKSSL N L +K Sbjct: 213 NIEEGVLADVNTSVRGLQAEIQGHLQDARRGERLRSGVQVVIAGPTNAGKSSLLNLLCQK 272 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 AIV+ + GTTRDV+ L++ G+ V +SDTAG+R T D VE+EG++R + AD++ Sbjct: 273 PTAIVSPVAGTTRDVVESALNIGGFPVLLSDTAGLRATQDPVEREGVRRAQDRLTQADIV 332 Query: 303 ---------------LLLKEINSKKEISFP-----KNIDFIFIGTKSDL---YSTYTEEY 339 L L+ + + + + P D + G+ L + + Sbjct: 333 LAVLDATDIASDSSHLFLETMRGQGDPTRPCLLVLNKADLLTPGSHQGLVGIFQGWGLTP 392 Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS-----HKRHLYH-LSQTVRYLEMA 393 L+S TGEG+E L++ +K L+ PS H+RHL+ L+ RY + Sbjct: 393 VLLMSCKTGEGVEGLLDALKEELAAICGDPAVGSPSLTQTRHRRHLHDCLAALGRYQQW- 451 Query: 394 SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +E+D L + AE LR A LG+ITG V ++LD+IF FCIGK Sbjct: 452 --HERD--LALAAEELRAARGHLGRITGRVGAAEILDVIFRDFCIGK 494 >gi|162147024|ref|YP_001601485.1| tRNA modification GTPase TrmE [Gluconacetobacter diazotrophicus PAl 5] gi|209544086|ref|YP_002276315.1| tRNA modification GTPase TrmE [Gluconacetobacter diazotrophicus PAl 5] gi|226704782|sp|A9HE16|MNME_GLUDA RecName: Full=tRNA modification GTPase mnmE gi|161785601|emb|CAP55172.1| putative tRNA modification GTPase [Gluconacetobacter diazotrophicus PAl 5] gi|209531763|gb|ACI51700.1| tRNA modification GTPase TrmE [Gluconacetobacter diazotrophicus PAl 5] Length = 435 Score = 297 bits (760), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 172/450 (38%), Positives = 263/450 (58%), Gaps = 25/450 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR- 59 M E+ IFA++TGA +AI+++RL+G C + + +C P PR+ASLR + D Sbjct: 1 MPTEQMPIFALATGAGRAAIAVMRLTGAGCGDMLQRLCGPLPP-PRQASLRGLWRRDAAA 59 Query: 60 ---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 +LD+ L++ FP P S+TGEDSAE H+H G AV+ G+ + L + R A PGEF+RR Sbjct: 60 APVLLDRALVLWFPGPRSYTGEDSAELHLHAGPAVIAGVADALVAL-GARPAEPGEFTRR 118 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF +G++DL+EAE +ADLI +ETE QRR +++ G LS +Y W +L + + EA + Sbjct: 119 AFAHGRLDLIEAEGIADLIDAETEAQRRQALDQADGTLSRIYDGWAARLRTLLAHQEALI 178 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 DF +E D+ + +L+D+ L++++ +H+ G GE +R G I+G N GKSSL Sbjct: 179 DFPDE-DLPPGVEQALLDDLTALRSEMQAHLDDGGRGEKLRRGLVFTIVGAPNVGKSSLL 237 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 NALA +D AIV+ I GTTRD + I + L V + DTAG+RET D +E EG++R V Sbjct: 238 NALAGRDAAIVSAIAGTTRDAIEIRVVLGDVPVTLIDTAGLRETQDEIEAEGVRRALFHV 297 Query: 297 ENADLILLLKEINSKKEISFPKNI--DFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEEL 354 ++AD ++ + + + P +I D I + K DL IS G G++ L Sbjct: 298 KHADCVIAMFDGE-----TVPDDIPADAIRVRNKVDLAPVPAGADAIGISVRQGTGMDAL 352 Query: 355 INKIKSILSNKFKKLPFSIP----SHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLR 410 ++ L+ + + L S + RH + +T +L A+L+ ++ E +R Sbjct: 353 ----RTALAERARALTASAAGPPLTRARHRAAIEETAGHL-AAALDMH--WPEMRGEEMR 405 Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LA +LG++TG V VE LLD +F +FCIGK Sbjct: 406 LAMRALGRLTGAVGVEDLLDTVFGQFCIGK 435 >gi|218529834|ref|YP_002420650.1| tRNA modification GTPase TrmE [Methylobacterium chloromethanicum CM4] gi|218522137|gb|ACK82722.1| tRNA modification GTPase TrmE [Methylobacterium chloromethanicum CM4] Length = 444 Score = 295 bits (756), Expect = 8e-78, Method: Compositional matrix adjust. Identities = 168/442 (38%), Positives = 262/442 (59%), Gaps = 4/442 (0%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR- 59 + +TIFA ++G +A++++R+SGP+ + + + P PR+ SLR D R Sbjct: 5 LPQRDDTIFAPASGFGRAAVTVVRISGPAAGLALDRLAGGR-PEPRRLSLRRLRDPDSRD 63 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 +LD+ L+ P P + TGED AE H+HGG+AV + +L LA +P R A G FSRRAF Sbjct: 64 LLDQALVAWLPGPATATGEDMAELHLHGGLAVRSAVLRALAGVPGCRPAEAGAFSRRAFL 123 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NG+IDL EAE +ADLI +ETE QR ++ + G L W + + + EA LDF+ Sbjct: 124 NGRIDLTEAEGIADLIDAETEAQRVQALRQLDGALGRQVAAWRETGIDLLAGAEAALDFA 183 Query: 180 EEEDVQNFSSKEVLND-ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 +E DV + L+ L++ I + ++ G+ GE +R G+ +V+ G NAGKS+L NA Sbjct: 184 DEGDVDDADLDAALSGRATALRDAIRAALADGRRGERLREGFCVVLAGAPNAGKSTLLNA 243 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L+ +D AIV+DIPGTTRD + + DL G V + DTAG+RET D +E EG+KRT + + Sbjct: 244 LSGRDAAIVSDIPGTTRDAIDVRCDLGGLPVVLVDTAGLRETADAIEAEGVKRTQSRIRS 303 Query: 299 ADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKI 358 ADL+L L + + + ++ + + TK+DL E IS+ TG GL+ L++ I Sbjct: 304 ADLVLHLVPADGEADAGRFADVPVLLVRTKTDLAPEGPGEGSLAISAVTGAGLDALLDAI 363 Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGK 418 ++ + ++ + +RH LS+ +L+ + +++AE+LRLA +LG+ Sbjct: 364 QASAQTALGQ-GDALVTRERHREALSRAAAHLDRVATAAAGFPPELVAEDLRLAVRALGE 422 Query: 419 ITGCVDVEQLLDIIFSKFCIGK 440 + G V VE++LD +F+ FCIGK Sbjct: 423 VGGHVGVEEMLDRLFAGFCIGK 444 >gi|110677827|ref|YP_680834.1| tRNA modification GTPase TrmE [Roseobacter denitrificans OCh 114] gi|123362327|sp|Q16CZ5|MNME_ROSDO RecName: Full=tRNA modification GTPase mnmE gi|109453943|gb|ABG30148.1| tRNA modification GTPase TrmE, putative [Roseobacter denitrificans OCh 114] Length = 428 Score = 295 bits (755), Expect = 9e-78, Method: Compositional matrix adjust. Identities = 172/437 (39%), Positives = 258/437 (59%), Gaps = 12/437 (2%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +T+FA+ + + +S+IRLSGP+ + V E IC P PRK+++R DG ++D+ L Sbjct: 2 DTVFALGSAQGRAGVSVIRLSGPAAWAVAETICGSL-PDPRKSAVRVLRAQDGSVIDQAL 60 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 ++ F +P SFTGED EFHVHG IAVV +L+ L+ RLA GEF+RRA ENGK+DL Sbjct: 61 VLAFKAPHSFTGEDVVEFHVHGSIAVVRTVLDALSDQDVARLAEAGEFTRRALENGKLDL 120 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 + E LADLI +ETE QRR ++ ++G L W KL + IEA +DF+ +EDV Sbjct: 121 SQVEGLADLIDAETEAQRRQAVRVLTGALGEKVEVWRSKLIRAAALIEATIDFA-DEDVP 179 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 + EV + + + +D+ + ++ + E IR+G++I ++G NAGKS+L N LA +D A Sbjct: 180 VDVTPEVTSLLEDVSSDVRTEVAGTHVAERIRSGFEIALVGAPNAGKSTLLNKLAGRDAA 239 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 I ++I GTTRDV+ + +DL G V DTAG+R++ D +E GI+R + ADL + L Sbjct: 240 ITSEIAGTTRDVIEVRMDLGGLPVTFLDTAGLRQSADEIETIGIERAIKRAQEADLRVFL 299 Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365 + + I P D I + K DL IS TG+G+ EL+ KI+S+ S + Sbjct: 300 SGPDERLLIE-PLE-DDIRLTPKVDLAPGSQTG----ISGKTGQGIPELLEKIRSVFSER 353 Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLASVSLGKITGCV 423 + + +H+RH + + + L+ + +L DI A+ LR A +L + G + Sbjct: 354 VSAV--GLATHERHRLAMQRALEDLDNSFEALLRGPEFYDITAQELRSAIRALETLVGRI 411 Query: 424 DVEQLLDIIFSKFCIGK 440 D E LLD IFS FC+GK Sbjct: 412 DAENLLDEIFSSFCLGK 428 >gi|58865408|ref|NP_001011919.1| tRNA modification GTPase GTPBP3, mitochondrial precursor [Rattus norvegicus] gi|81883253|sp|Q5PQQ1|GTPB3_RAT RecName: Full=tRNA modification GTPase GTPBP3, mitochondrial; AltName: Full=GTP-binding protein 3; Flags: Precursor gi|56268874|gb|AAH87083.1| GTP binding protein 3 (mitochondrial) [Rattus norvegicus] Length = 492 Score = 295 bits (754), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 176/461 (38%), Positives = 255/461 (55%), Gaps = 30/461 (6%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-RKASLRYF-FGLDGRILDKG 64 TIFA+S+G AI++IR SGP+ + ++P P R A LR G LD+ Sbjct: 35 TIFALSSGQGRCAIAVIRTSGPASGLALRSLTALREPPPARSACLRLLRHPCSGEPLDRS 94 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 L++ FP P+SFTGED E HVHGG AVV+G+L+ L +P LR A GEF+RRAF +GK+ Sbjct: 95 LVLWFPGPQSFTGEDCMELHVHGGPAVVSGVLQALGSVPGLRPAKAGEFTRRAFAHGKLS 154 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L E E LADLI +ETE QRR ++ + GELS L W LT + +EA +DF E++++ Sbjct: 155 LTEVEGLADLIHAETEAQRRQALRQLDGELSQLCQGWAKTLTKALAHVEAYIDFGEDDNL 214 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + ++V D+ L+ +SSH+ + G+ +R+G +V+ G NAGKSSL N L++K V Sbjct: 215 EEGVLEQVDRDVRALEVALSSHLRDARRGQRLRSGANVVVAGPPNAGKSSLVNLLSQKPV 274 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 +IV+ PGTTRD+L +DL G+ V +SDTAG+RE VE+EG++R +E AD+IL Sbjct: 275 SIVSPEPGTTRDILETPVDLAGFPVLLSDTAGLREGAGAVEQEGVRRARQRLEQADIILG 334 Query: 305 L---KEINSKKEISFPKNIDFIFIGTKSD-------------------LYSTYTEEYDH- 341 + ++ S SF + + D ++ T H Sbjct: 335 MLDASDLASSSSCSFLDTVVAPLVAQSHDSGRQRLLLLLNKSDLLSANAPASSTALPPHL 394 Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFSIP--SHKRHLYHLSQTVRYLEMASLNEKD 399 L+S TG G++ L+ +K+ L+ P + RH YHL + L L Sbjct: 395 LLSCHTGAGMDALLQALKTELAAVCGDPSTGPPLLTRARHQYHLQGCLDALGRFQLTTD- 453 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L + AE LR A L +TG E++LD+IF FC+GK Sbjct: 454 --LALAAEALRQARRQLSHLTGGGGTEEILDLIFQDFCVGK 492 >gi|260797062|ref|XP_002593523.1| hypothetical protein BRAFLDRAFT_125232 [Branchiostoma floridae] gi|229278748|gb|EEN49534.1| hypothetical protein BRAFLDRAFT_125232 [Branchiostoma floridae] Length = 517 Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 181/491 (36%), Positives = 270/491 (54%), Gaps = 59/491 (12%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLDGRILDKGL 65 TIFA+S+G ++++R++GP + ++ P R+A+L+ + G LD+GL Sbjct: 29 TIFALSSGHGKCGVAVVRVTGPHASSAVRLLTRRPVLPAVRRAALKRLYDSTGEPLDRGL 88 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 +I FP P SFTGEDS EFHVHGG +VV +L+ L M LR A GEF++RAF+NGK+DL Sbjct: 89 VIWFPGPHSFTGEDSCEFHVHGGPSVVTSLLQALGNMEGLRPAEAGEFTKRAFQNGKLDL 148 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 E E LADLI +ETE QR+ ++ M G+LS LY W +L + +EA +DFSE+E+++ Sbjct: 149 TEVEGLADLIHAETEAQRKQALRQMEGDLSRLYSDWSRRLLKCVANVEAYIDFSEDENIE 208 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 +V ++ L+ ++ H+S G+ GE +R+G ++ ILG N GKSSL NA+ ++ A Sbjct: 209 AGVLDDVEREVCQLREELERHLSDGRRGERLRSGVQVAILGKPNVGKSSLLNAVCQRPAA 268 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL-ILL 304 IVT + GTTRDV+ ++L GY V +SDTAG+RET+DIVE+EG++R + AD+ +L+ Sbjct: 269 IVTPVAGTTRDVVESAVNLGGYPVLLSDTAGLRETEDIVEQEGVRRARQRAQQADISVLV 328 Query: 305 LKEINSKKEIS--------------------------FPKN-------IDFIFIGTKSDL 331 L + +S F N ++ + KSDL Sbjct: 329 LDATDVMAAVSRQPGHYLTLQQYVQDHIPDLGLQGTTFDTNDGTTNPTDSYLIVVNKSDL 388 Query: 332 Y------------STYTEEYDH-------LISSFTGEGLEELINKIKSILSNKFKKLPFS 372 S E D ++S TGEG++ + ++ + Sbjct: 389 VDAGGSLGTLLASSELATEGDGARDGDVCVMSCLTGEGMDGFLQLLQLKVKLMCGNPLAG 448 Query: 373 IPS--HKRHLYHLSQTVRYL-EMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLL 429 PS RH HL+ ++ L A + E+D L + AE LR LGKITG + E++L Sbjct: 449 NPSFTQARHRAHLTACLQALTSYAGMCERD--LVLAAEELRTGLRHLGKITGKMGAEEIL 506 Query: 430 DIIFSKFCIGK 440 D+IF FCIGK Sbjct: 507 DVIFRDFCIGK 517 >gi|321474525|gb|EFX85490.1| hypothetical protein DAPPUDRAFT_300302 [Daphnia pulex] Length = 496 Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 178/467 (38%), Positives = 266/467 (56%), Gaps = 33/467 (7%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP--FPRKASL-RYFFGLDGRIL 61 + TIFA+S+G SAI++IR+SGP V + ++KK PRKA L R + +L Sbjct: 32 RSTIFALSSGLSKSAIAVIRISGPKSLDVIHRMTRRKKDSVIPRKALLCRIVDPKNEEML 91 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121 D GL++ FP P SFTGEDS E HVHGG+AVV+ ++ L K+P RLA GEF++RA+ G Sbjct: 92 DNGLVLWFPQPHSFTGEDSVELHVHGGVAVVSSVINALHKLPGFRLAEAGEFTKRAYLAG 151 Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181 K+D E E LADL+ +ETE QRR ++ +GEL+ LY W ++ + +EA +DF E+ Sbjct: 152 KLDATEVEGLADLLRAETETQRRQAIRQATGELAGLYNLWRTRVLTCMAHLEAFIDFGED 211 Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 +D+ + + + LK ++ SH++ + GE +R+G K+ I+G NAGKSSL N L + Sbjct: 212 QDIGEEVLGTLRDSVQSLKAEVDSHLNDNRRGERLRSGVKVAIIGEPNAGKSSLINILGR 271 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 ++VAIV+ GTTRDVL I LD+ G+ V I DTAG+R + D VE EG++R ADL Sbjct: 272 RNVAIVSPHAGTTRDVLEISLDIGGFPVVICDTAGLRHSVDPVENEGLRRAREAAATADL 331 Query: 302 ILLLKEINSKKE-------------------ISFPKNIDFIFIGTKSDLYSTYTEEYDHL 342 ++++ + + E +SF +++ + K DL S L Sbjct: 332 VIIVMDASRGPESLWQQPVKDLIRHECQRLNLSFSAENNYLVLLNKLDLVSPNVNRPPEL 391 Query: 343 --ISSFTGEGLEELI----NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE-MASL 395 IS T +GL E + K+ + +N ++ P S +RH H+ +LE + Sbjct: 392 SAISCKTEKGLGEFLVHLEGKLAELCANPLQESPLITSSRQRH--HVQLAFWHLEKFLDI 449 Query: 396 NEKDCGLDIIAENLRLASVSLGKIT--GCVDVEQLLDIIFSKFCIGK 440 E L + E LR ++ LG IT G +D E++LD++F FCIGK Sbjct: 450 VEHQGDLALAGEYLRRSANQLGSITARGKIDTEEMLDVLFRSFCIGK 496 >gi|188580912|ref|YP_001924357.1| tRNA modification GTPase TrmE [Methylobacterium populi BJ001] gi|205415780|sp|B1ZGG9|MNME_METPB RecName: Full=tRNA modification GTPase mnmE gi|179344410|gb|ACB79822.1| tRNA modification GTPase TrmE [Methylobacterium populi BJ001] Length = 444 Score = 294 bits (752), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 165/440 (37%), Positives = 252/440 (57%), Gaps = 8/440 (1%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD---GRIL 61 +ETIFA ++G +A++++R+SGP+ + + + P L D G IL Sbjct: 9 EETIFAPASGFGRAAVAVVRVSGPAAGPALDQLAGGR---PEPRRLSLRRLRDPGTGNIL 65 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121 D+ L+ P P + TGED AE H+HGG+AV +L L ++P R A G FSRRAF NG Sbjct: 66 DQALVAWLPGPATATGEDMAELHLHGGLAVRAAVLRALGRVPGCRPAEAGAFSRRAFLNG 125 Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181 +IDL EAE +ADLI +ETE QR ++ + G L W + + + EA LDF++E Sbjct: 126 RIDLTEAEGIADLIDAETEAQRVQALRQLDGALGRQVAAWRETGIELLAGAEAALDFADE 185 Query: 182 EDVQNFSSKEVLNDILFLKND-ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 DV L D I + ++ G+ GE +R G+ +V+ G NAGKS+L NAL+ Sbjct: 186 GDVDEDGLDAALAGRAAALRDAIRAALADGRRGERLREGFCVVLAGAPNAGKSTLLNALS 245 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 +D AIV+DIPGTTRD + + DL G V + DTAG+RET D++E EG++RT + +AD Sbjct: 246 GRDAAIVSDIPGTTRDAIEVRCDLGGLPVVLVDTAGLRETADVIEAEGVRRTHHRIRSAD 305 Query: 301 LILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKS 360 L+L L + + + + + TKSDL S E +S+ TG GL+ L++ I+ Sbjct: 306 LVLHLVPADGEAGPEDFAEVPVLRVRTKSDLPSGAPGEGGLAVSAVTGAGLDALLDAIQG 365 Query: 361 ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKIT 420 ++ ++ + +RH LS+ +L+ + +++AE+LRLA +LG++ Sbjct: 366 SAASALGG-GDALVTRERHREALSRAAGHLDRVATAPAGFPPELVAEDLRLAVRALGEVG 424 Query: 421 GCVDVEQLLDIIFSKFCIGK 440 G V VE++LD +F+ FCIGK Sbjct: 425 GHVGVEEMLDRLFAGFCIGK 444 >gi|296233234|ref|XP_002761924.1| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial isoform 1 [Callithrix jacchus] Length = 492 Score = 293 bits (751), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 177/464 (38%), Positives = 260/464 (56%), Gaps = 36/464 (7%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFF-GLDGRILDKG 64 TIFA+S+G +++IR SGP+ + + P R ASLR G LD+ Sbjct: 35 TIFALSSGQGRCGVAVIRTSGPASGHALRILTAPRDLPPARHASLRLLSDPRSGEPLDRA 94 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 L++ FP P+SFTGED EFHVHGG AVV+G+L L +P LR A GEF+RRAF +GK++ Sbjct: 95 LVLWFPGPKSFTGEDCVEFHVHGGPAVVSGVLRALGSVPGLRPAEAGEFTRRAFAHGKLN 154 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L E E LADLI +ETE QRR ++ + GEL L W + LT + +EA +DF E++++ Sbjct: 155 LTEVEGLADLIHAETEAQRRQALRQLDGELGHLCRGWAETLTKALAHVEAYIDFGEDDNL 214 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + ++ ++ L+ + +H+ + G+ +R+G +V+ G NAGKSSL N L++K V Sbjct: 215 EEGVLEQANIEVRALEVALGAHLRDARRGQRLRSGAHVVVTGPPNAGKSSLVNLLSRKPV 274 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 +IV+ PGTTRDVL +DL G+ V +SDTAG+RE VE+EG++R +E ADLIL Sbjct: 275 SIVSPEPGTTRDVLETPVDLAGFPVLLSDTAGLREGVGPVEQEGVRRARERLEQADLILA 334 Query: 305 LKEINSKKEISFPKNIDFI--------------------FIGTKSDLYSTYTEEYDH--- 341 + + + +++ P + +F+ + KSDL ST Sbjct: 335 MLDAS---DLASPSSCNFLATVVASAGAQSRSSSSQRLLLVLNKSDLLSTEGPGPGPDMP 391 Query: 342 ---LISSFTGEGLEELINKIKSILSNKFKKLPFSIP--SHKRHLYHLSQTVRYLEMASLN 396 L+S TGEGL+ L+ +K L+ P + RH +HL + L Sbjct: 392 PHLLLSCVTGEGLDGLLEALKMELAAVCGDPSTGPPLLTRARHQHHLQGCLDALGHYK-Q 450 Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 KD L + AE LR+A L ++TG E++LDIIF FC+GK Sbjct: 451 SKD--LALAAEALRVARGHLTRLTGGGGTEEILDIIFRDFCVGK 492 >gi|119605004|gb|EAW84598.1| GTP binding protein 3 (mitochondrial), isoform CRA_b [Homo sapiens] Length = 497 Score = 293 bits (750), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 177/469 (37%), Positives = 260/469 (55%), Gaps = 41/469 (8%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFF-GLDGRILDKG 64 TIFA+S+G I++IR SGP+ + + P R ASLR G LD+ Sbjct: 35 TIFALSSGQGRCGIAVIRTSGPASGHALRILTAPRDLPLARHASLRLLSDPRSGEPLDRA 94 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 L++ FP P+SFTGED EFHVHGG AVV+G+L+ L +P LR A GEF+RRAF NGK++ Sbjct: 95 LVLWFPGPQSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFANGKLN 154 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR-----SFIEADLDFS 179 L E E LADLI +ETE QRR ++ + GEL L W + LT + +EA +DF Sbjct: 155 LTEVEGLADLIHAETEAQRRQALRQLDGELGHLCRGWAETLTKASPPFALAHVEAYIDFG 214 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 E+++++ ++ ++ L+ + +H+ + G+ +R+G +V+ G NAGKSSL N L Sbjct: 215 EDDNLEEGVLEQADIEVRALQVALGAHLRDARRGQRLRSGAHVVVTGPPNAGKSSLVNLL 274 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 ++K V+IV+ PGTTRDVL +DL G+ V +SDTAG+RE VE+EG++R +E A Sbjct: 275 SRKPVSIVSPEPGTTRDVLETPVDLAGFPVLLSDTAGLREGVGPVEQEGVRRARERLEQA 334 Query: 300 DLILLLKEINSKKEISFPKNIDF--------------------IFIGTKSDLYSTYTEEY 339 DLIL + + + +++ P + +F + + KSDL S Sbjct: 335 DLILAMLDAS---DLASPSSCNFLATVVASVGAQSPSDSSQRLLLVLNKSDLLSPEGPGP 391 Query: 340 DH------LISSFTGEGLEELINKIKSILSNKFKKLPFSIP--SHKRHLYHLSQTVRYLE 391 L+S TGEGL+ L+ ++ L+ P + RH +HL + L Sbjct: 392 GPDLPPHLLLSCLTGEGLDGLLEALRKELAAVCGDPSTDPPLLTRARHQHHLQGCLDALG 451 Query: 392 MASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 KD L + AE LR+A L ++TG E++LDIIF FC+GK Sbjct: 452 HYK-QSKD--LALAAEALRVARGHLTRLTGGGGTEEILDIIFQDFCVGK 497 >gi|170058589|ref|XP_001864986.1| tRNA modification GTPase GTPBP3, mitochondrial [Culex quinquefasciatus] gi|167877662|gb|EDS41045.1| tRNA modification GTPase GTPBP3, mitochondrial [Culex quinquefasciatus] Length = 490 Score = 292 bits (748), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 184/480 (38%), Positives = 270/480 (56%), Gaps = 52/480 (10%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFF-GLDGRILD 62 + TIF +S+G+ +++IR+SG + V K P R+A LR ++D Sbjct: 19 RGTIFGLSSGSGKCGVAVIRVSGDASSDVVHRKTSSNKLPAARQAVLRRIVHSRTAEMID 78 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 +GL++ FP P SFTGED EFHVHGG AVV+ + + L + +RLA PGEF++RAF GK Sbjct: 79 RGLVLWFPGPHSFTGEDCVEFHVHGGAAVVSAMYDSLGSIDGVRLAEPGEFTKRAFYAGK 138 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 +DL E E LADLI +ETE QR+ ++ SGELS LY + +L + +EA +DF+E++ Sbjct: 139 MDLTEVEGLADLIEAETEAQRKQALLQASGELSKLYNEMRSRLVRCIANVEAYIDFAEDQ 198 Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 DV + + V D+ L DIS+H++ + GE +R G + I+G N GKSS N L+ + Sbjct: 199 DVDDTVLQSVGEDVATLVRDISTHLNDHRRGERLRAGVRTAIIGAPNVGKSSFVNLLSNR 258 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADL 301 V+IVT++ GTTRD++ D+ GY V ++DTAG+R TDDIVE EGI R + ADL Sbjct: 259 KVSIVTNVAGTTRDIIESHHDIGGYPVILADTAGLRASTDDIVEIEGISRAKDYFQLADL 318 Query: 302 ILLLKEINSKKEISFPKNIDF------------------------IFIGTKSDLY-STYT 336 ++L+ I+S+ + +N D + I K DL ++ Sbjct: 319 LILM--IDSEDLQRYLQNGDTFDCFLSHYLTSLGINREALSTAKSMLIVNKCDLLPESFL 376 Query: 337 EEYDH-----LISSFTGEGLE----ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV 387 E L+S T GLE E+ +K + N K+ P S +RH YHL Q V Sbjct: 377 EPIKKIPNITLLSCHTQAGLEAVLQEITTNLKHLCGNPSKESPN--LSQQRHRYHLKQCV 434 Query: 388 -------RYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 RY+E +++ L I ++LR A+ +GKITG ++ E++LD+IFS FCIGK Sbjct: 435 DCLEKYQRYVE----GQRNPDLAIATQHLRNATRCIGKITGAIETEEILDVIFSTFCIGK 490 >gi|260431964|ref|ZP_05785935.1| tRNA modification GTPase TrmE [Silicibacter lacuscaerulensis ITI-1157] gi|260415792|gb|EEX09051.1| tRNA modification GTPase TrmE [Silicibacter lacuscaerulensis ITI-1157] Length = 428 Score = 292 bits (748), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 179/439 (40%), Positives = 248/439 (56%), Gaps = 16/439 (3%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TIFA+++ + +++IRLSGP + + P R +R F DG LD GL Sbjct: 2 DTIFALASAQGKAGVAVIRLSGPLAHRAAAELSGGDLP-ARGMRVREFRAPDGSRLDDGL 60 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 ++ F P SFTGED AE +HG A VN +L LA M LR+A PGEF+RRA ENGK+DL Sbjct: 61 VLTFQGPASFTGEDVAELQIHGSTAAVNAVLRTLADMDGLRIAEPGEFTRRALENGKLDL 120 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 + E LADLI +ETE QR+ + ++GEL L +W L S +EA +DF++EE V Sbjct: 121 AQVEGLADLIDAETEAQRKQAQTILAGELGDLAERWRRDLIRAASLLEAVIDFADEE-VP 179 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 + EV I + D+ K+ E IRNG+++ I+G NAGKS+L NALA ++ A Sbjct: 180 TDVTPEVRQLIAGVMTDLDRESRGVKIAERIRNGFEVAIVGPPNAGKSTLLNALAGREAA 239 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 I ++ GTTRDV+ + +DL G V + DTAG+RET D VE GI E ADL + L Sbjct: 240 ITSEYAGTTRDVIEVRMDLAGLPVTLLDTAGLRETGDHVENLGIALARERAEKADLRVFL 299 Query: 306 KEINSKKEISF-PKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364 E + ISF P +I + KSDL + + +S TG+G++ LIN+I +L Sbjct: 300 TEDPDQLGISFQPGDIHVL---PKSDLRAA----SETGVSGKTGQGIDRLINQISRVLME 352 Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG---LDIIAENLRLASVSLGKITG 421 + I + +RH + + L SL + G DI AE LR A +L + G Sbjct: 353 RTAS--SGIATRERHRSAMQRASAAL-TDSLKVLESGPDLYDIAAEELRTAIRALESLVG 409 Query: 422 CVDVEQLLDIIFSKFCIGK 440 VDVE LLD IF+ FC+GK Sbjct: 410 RVDVENLLDEIFASFCLGK 428 >gi|226952825|ref|ZP_03823289.1| GTPase involved in tRNA modification and in thiophene and furan oxidation [Acinetobacter sp. ATCC 27244] gi|226836446|gb|EEH68829.1| GTPase involved in tRNA modification and in thiophene and furan oxidation [Acinetobacter sp. ATCC 27244] Length = 454 Score = 292 bits (747), Expect = 9e-77, Method: Compositional matrix adjust. Identities = 171/457 (37%), Positives = 266/457 (58%), Gaps = 23/457 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M H+ TI A++T + +IRLSGP + + + + +K+ P R A+ R F+ +D + Sbjct: 4 MQHQT-TIAAIATPLGRGGVGVIRLSGPKAYMIAKELTQKQLPTARMAAFRQFYDVDNSV 62 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+G+++ FP+P SFTGED E HGG + N +L L + A GEFS RAFEN Sbjct: 63 MDEGIILCFPNPHSFTGEDVVEIQGHGGPVIQNALLARLLDL-GATAAKAGEFSMRAFEN 121 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GK+DL++AE++ADLI + ++ R ++ + G S+ ++KL H+R +EA +DF E Sbjct: 122 GKMDLVQAEAIADLIDATSQAAARSAVRSLQGAFSTKINTVLEKLIHLRLHVEAAIDFPE 181 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + + ++L + +++ + + + G+++R G ++VI G NAGKSSL NALA Sbjct: 182 EE-IDFLADGKILALLDDVQDSVKAVQQSARQGQLLREGLQVVIAGKPNAGKSSLLNALA 240 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 + AIVTDI GTTRDVL + L G + ++DTAG+RET D+VE+EGI+R E+E AD Sbjct: 241 GHERAIVTDIAGTTRDVLHEKISLNGLPITLTDTAGLRETGDVVEREGIRRAIKEIEQAD 300 Query: 301 LILLLKEINSKKEI------SFPKNID---FIFIGTKSDLYSTYTEEYDHL------ISS 345 L+LL+ ++N E F +++ + IG K DL E D+ +S+ Sbjct: 301 LLLLVYDLNQGDEPLQLAHEYFADHLEPKRLLLIGNKCDLTGQPAEMTDYQGFRHIRVSA 360 Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLD 403 G++ LI+ I + F+ + + RHL + +T RYL A L + G + Sbjct: 361 KQDMGVQALIDAITA--HAGFQPEEDTFIARTRHLDAMKRTQRYLAEAREQLVVFNAG-E 417 Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++AE+LRLA +LG+ITG + LL IF FCIGK Sbjct: 418 LVAESLRLAQNALGEITGDFSADDLLGKIFGSFCIGK 454 >gi|190571401|ref|YP_001975759.1| tRNA modification GTPase TrmE [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018799|ref|ZP_03334607.1| tRNA modification GTPase TrmE [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|226704787|sp|B3CMJ7|MNME_WOLPP RecName: Full=tRNA modification GTPase mnmE gi|190357673|emb|CAQ55117.1| tRNA modification GTPase TrmE [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995750|gb|EEB56390.1| tRNA modification GTPase TrmE [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 442 Score = 291 bits (746), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 178/449 (39%), Positives = 266/449 (59%), Gaps = 16/449 (3%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M + ETIFA+ST S +++IR+SG + KKK PR A+L + ++ Sbjct: 1 MTNTNETIFALSTVFGKSGVAVIRISGNYTLKALNHFHIKKKIKPRFATLVDLYDDSNQL 60 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D G++I FP+P SFTGED E VHG AV+ ILE+L+K+ +A PGEFS RAF N Sbjct: 61 IDNGIIIYFPAPNSFTGEDVIELQVHGSKAVIKIILEKLSKI--FVMARPGEFSLRAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GK DL + E +ADLI +ET+MQ + +++ +SGEL LY W +L I+S IEA +DF E Sbjct: 119 GKFDLTQIEGIADLIDAETKMQAKQAIKQISGELERLYSNWRQRLITIQSKIEAYIDFPE 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 + + +++ N++ L I H++ + GE +R G IVI G N GKS+LFN LA Sbjct: 179 DIWAEKSELEKINNEVQSLVQLIQEHLNDNRRGERLREGLHIVITGEPNVGKSTLFNFLA 238 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 K+D+AIV++ GTTRD+L +D+ GY + +SDTAGIRE+ D +E EGI R AD Sbjct: 239 KRDIAIVSEYAGTTRDILEAHIDIGGYPIILSDTAGIRESSDPIESEGISRAKKRSFEAD 298 Query: 301 LILLLKEINSKKEISFP-KNIDFIFIGTKSD----LYSTYTEEYDHL-ISSFTGEGLEEL 354 L + L + I+ N D I++ +K+D + D L IS G G +L Sbjct: 299 LRIELFPFEQRHNINCNVVNSDTIYVLSKADDAINDRNILIGGVDFLPISILKGIGTNKL 358 Query: 355 INKIKSILSNKF---KKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411 I+ IK KF + P + + +RH H+ + + +L+ + D +++I+E+LRL Sbjct: 359 ISLIKKKAEEKFGHDRDTP--VITRQRHRSHMQKALEHLQRFKI---DNPIELISEDLRL 413 Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A+ LG + G ++VE++LD +FS FC+GK Sbjct: 414 AAFELGAVIGIINVEEILDSVFSSFCVGK 442 >gi|297466925|ref|XP_002704761.1| PREDICTED: GTP binding protein 3 (mitochondrial) [Bos taurus] gi|297476307|ref|XP_002688589.1| PREDICTED: GTP binding protein 3 (mitochondrial) [Bos taurus] gi|296486094|gb|DAA28207.1| GTP binding protein 3 (mitochondrial) [Bos taurus] Length = 470 Score = 291 bits (745), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 172/442 (38%), Positives = 252/442 (57%), Gaps = 14/442 (3%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFF-GLDGRILDKG 64 TIFA+S+G I++IR SGP+ + + + P RKA LR G LD+ Sbjct: 35 TIFALSSGQGRCGIAVIRTSGPASGHALQSLTAPRDLPLARKACLRLLSDPRSGEPLDRA 94 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 L++ FP P+SFTGED AEFHVHGG AVV+G+L+ L +P LR A GEF+RRAF +GK+ Sbjct: 95 LVLWFPGPQSFTGEDCAEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFAHGKLS 154 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L E E LADLI +ETE QRR ++ + GEL L W + LT + +EA +DFSE++++ Sbjct: 155 LTEVEGLADLIHAETEAQRRQALRQLDGELGDLCRGWAETLTKALAHVEAYIDFSEDDNL 214 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + + +++ L+ + H+ + G+ +R+G +V+ G NAGKSSL N L++K V Sbjct: 215 EEGVLDQADSEVRKLEVALGVHLRDARRGQRLRSGAHVVVAGPPNAGKSSLVNLLSRKPV 274 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 +IV+ PGTTRDVL +DL G+ +SDTAG+RE VE+EG++R D +++ Sbjct: 275 SIVSPEPGTTRDVLETPVDLAGFPALLSDTAGLREGVGPVEQEGVRRAQKSCNFLDTVVI 334 Query: 305 LKEI----NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKS 360 S++ + N + +SDL+ L+S TGEGL+ L+ +K Sbjct: 335 PAGARNPNGSRQRLLLVLNKSDLLPAGRSDLHPDLPSHL--LLSCLTGEGLDGLLEALKK 392 Query: 361 ILSNKFKKLPFSIP--SHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGK 418 L+ P + P + RH +HL + L KD L + AE LR+A L Sbjct: 393 ELAALCGD-PSTGPLLTRSRHQHHLRGCLDALGQYK-QAKD--LALAAEALRVARGHLSH 448 Query: 419 ITGCVDVEQLLDIIFSKFCIGK 440 +TG E++LDIIF FC+GK Sbjct: 449 LTGGGGTEEILDIIFRDFCVGK 470 >gi|91974909|ref|YP_567568.1| tRNA modification GTPase TrmE [Rhodopseudomonas palustris BisB5] gi|91681365|gb|ABE37667.1| tRNA modification GTPase trmE [Rhodopseudomonas palustris BisB5] Length = 462 Score = 291 bits (745), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 175/464 (37%), Positives = 253/464 (54%), Gaps = 28/464 (6%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+ +TIFA++TG LPSAI+++R+SGP + + P PR A + + Sbjct: 3 MHPSDQTIFALATGQLPSAIAMVRVSGPRAGDLLTALTGSLPP-PRTARRVLIRDQNQDL 61 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D G+ + F P S TGED AEFH+HGG AV+ ++ L+ +R A PGEF+RRAFEN Sbjct: 62 IDDGVALWFAGPASATGEDVAEFHIHGGRAVLAALVRALSAFDGVRPAEPGEFTRRAFEN 121 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GK+DL EAE L DLI ++TE QRR ++ + G L +W ++ + IEA +DF++ Sbjct: 122 GKLDLTEAEGLDDLIHADTEAQRRQAVRQLGGLLGDRARRWRAQIIEATALIEAGIDFAD 181 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E DVQ L I L ++I+ ++ E +R+G + I G N GKS+L N LA Sbjct: 182 EGDVQGELMAPALQTIAALHDEIAEVLAAQGRSERLRDGMVVAIAGPPNVGKSTLINRLA 241 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 +++VAIV+ GTTRDV+ + LDL GY V + DTAGIRE++D VE+EG++R AD Sbjct: 242 RREVAIVSPHAGTTRDVIEVQLDLGGYPVTVIDTAGIRESNDPVEQEGVRRARARAAEAD 301 Query: 301 LILLLKEINSKKEISFPKNIDFIFIGTKSDLY------------------------STYT 336 L+L L E + + + + K DL + Sbjct: 302 LVLWLGEGEMTGD-AVAASAPVWRVRNKIDLRGGEGDGGPVGLPVEPLAAALRQTDGAWG 360 Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396 IS+ G+GL ELI I+ + F ++ S RH L L+ SL Sbjct: 361 GNAAFEISALRGQGLGELIAAIEDFAAQYFASGETALISRARHRTLLQDAAAMLQR-SL- 418 Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + D +++AE LRLA V+LG++ G VDVE +L IFS+FCIGK Sbjct: 419 QHDLPAELVAEELRLAGVALGRLLGRVDVEDVLGEIFSRFCIGK 462 >gi|205422245|sp|Q13E22|MNME_RHOPS RecName: Full=tRNA modification GTPase mnmE Length = 460 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 175/464 (37%), Positives = 253/464 (54%), Gaps = 28/464 (6%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+ +TIFA++TG LPSAI+++R+SGP + + P PR A + + Sbjct: 1 MHPSDQTIFALATGQLPSAIAMVRVSGPRAGDLLTALTGSLPP-PRTARRVLIRDQNQDL 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D G+ + F P S TGED AEFH+HGG AV+ ++ L+ +R A PGEF+RRAFEN Sbjct: 60 IDDGVALWFAGPASATGEDVAEFHIHGGRAVLAALVRALSAFDGVRPAEPGEFTRRAFEN 119 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GK+DL EAE L DLI ++TE QRR ++ + G L +W ++ + IEA +DF++ Sbjct: 120 GKLDLTEAEGLDDLIHADTEAQRRQAVRQLGGLLGDRARRWRAQIIEATALIEAGIDFAD 179 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E DVQ L I L ++I+ ++ E +R+G + I G N GKS+L N LA Sbjct: 180 EGDVQGELMAPALQTIAALHDEIAEVLAAQGRSERLRDGMVVAIAGPPNVGKSTLINRLA 239 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 +++VAIV+ GTTRDV+ + LDL GY V + DTAGIRE++D VE+EG++R AD Sbjct: 240 RREVAIVSPHAGTTRDVIEVQLDLGGYPVTVIDTAGIRESNDPVEQEGVRRARARAAEAD 299 Query: 301 LILLLKEINSKKEISFPKNIDFIFIGTKSDLY------------------------STYT 336 L+L L E + + + + K DL + Sbjct: 300 LVLWLGEGEMTGD-AVAASAPVWRVRNKIDLRGGEGDGGPVGLPVEPLAAALRQTDGAWG 358 Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396 IS+ G+GL ELI I+ + F ++ S RH L L+ SL Sbjct: 359 GNAAFEISALRGQGLGELIAAIEDFAAQYFASGETALISRARHRTLLQDAAAMLQR-SL- 416 Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + D +++AE LRLA V+LG++ G VDVE +L IFS+FCIGK Sbjct: 417 QHDLPAELVAEELRLAGVALGRLLGRVDVEDVLGEIFSRFCIGK 460 >gi|225630647|ref|YP_002727438.1| tRNA modification GTPase [Wolbachia sp. wRi] gi|254811498|sp|C0R405|MNME_WOLWR RecName: Full=tRNA modification GTPase mnmE gi|225592628|gb|ACN95647.1| tRNA modification GTPase [Wolbachia sp. wRi] Length = 442 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 175/449 (38%), Positives = 269/449 (59%), Gaps = 16/449 (3%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M + ETIFA+ST S +++IR+SG + KK+ PR A+L + ++ Sbjct: 1 MTNTNETIFALSTVFGKSGVAVIRISGNYALKALNHFHIKKEIKPRFATLVDLYDDSSQL 60 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D G++I FP+P SFTGED E VHG AV+ ILEEL+K+ +A PGEFS RAF N Sbjct: 61 IDNGIIIYFPAPNSFTGEDVIELQVHGSKAVIKIILEELSKV--FVMAKPGEFSLRAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GK DL + E +ADLI +ET+MQ + +++ +SGEL LY W +L I+S IEA +DF E Sbjct: 119 GKFDLTQIEGIADLIDAETKMQAKQAIKQISGELERLYSNWRQRLITIQSKIEAYIDFPE 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 + + +++ N++ L I H++ + GE +R G IVI G N GKS+LFN LA Sbjct: 179 DIWAEKSELEKINNEVQSLVRLIQEHLNDNRRGERLREGLHIVITGEPNVGKSTLFNFLA 238 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 K+D+AIV++ GTTRD+L +D+ GY + +SDTAGIRE+ D +E EGI R AD Sbjct: 239 KRDIAIVSEYAGTTRDILEAHIDIGGYPIILSDTAGIRESSDPIELEGISRAKKRSFEAD 298 Query: 301 LILLLKEINSKKEISFP-KNIDFIFIGTKS-DLYSTYTEEYDHL----ISSFTGEGLEEL 354 L + L + I+ N D I++ +K+ D+ + + + + + +S G G +L Sbjct: 299 LRIELFPFEQRPNINCNVVNSDTIYVLSKADDVINNHDIKINGIDLLPVSILKGIGTNKL 358 Query: 355 INKIKSILSNKF---KKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411 I+ IK KF + P + + +RH H+ + + +L+ ++ D +++I+E+LRL Sbjct: 359 ISLIKEKAEEKFGHDRDTP--VITRQRHRNHMQKALEHLQRFNI---DNPIELISEDLRL 413 Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A+ LG + G +DVE++L +FS FC+GK Sbjct: 414 AAFELGAVIGIIDVEEILSSVFSNFCVGK 442 >gi|169634938|ref|YP_001708674.1| tRNA modification GTPase TrmE [Acinetobacter baumannii SDF] gi|169153730|emb|CAP02931.1| GTPase involved in tRNA modification and in thiophene and furan oxidation [Acinetobacter baumannii] Length = 454 Score = 290 bits (742), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 173/455 (38%), Positives = 264/455 (58%), Gaps = 22/455 (4%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62 H + TI A++T + +IRLSGP + + + + +K P R A R F+ DG I+D Sbjct: 5 HSQTTIAAIATPPGRGGVGVIRLSGPKAYNIAQKLTQKNLPEARMAGFRKFYDTDGSIMD 64 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 +G+++ FP+P SFTGED E HGG + N +L L ++ A GEFS RAFENGK Sbjct: 65 EGIVLCFPNPHSFTGEDVVELQGHGGPVIQNALLGRLFEL-GANAAKAGEFSMRAFENGK 123 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 +DL++AE++ADLI + ++ R ++ + G S+ ++KL H+R +EA +DF EEE Sbjct: 124 MDLVQAEAIADLIDATSQAAARSAVRSLQGAFSTKINTVLEKLIHLRLHVEAAIDFPEEE 183 Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 + + ++L + ++ + + + + G+++R G ++VI G NAGKSSL NALA Sbjct: 184 -IDFLADGKILALLEDVQQSVHAVQTSARQGQLLREGLQVVIAGKPNAGKSSLLNALAGV 242 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 + AIVTDI GTTRDVL + L G + ++DTAG+RET D+VEKEGI+R E+E ADL+ Sbjct: 243 ERAIVTDIAGTTRDVLHEKISLNGLPITLTDTAGLRETGDVVEKEGIRRAIKEIEQADLL 302 Query: 303 LLLKEINSK------KEISFPKNID---FIFIGTKSDLYSTYTEEYD-----HLISSFTG 348 LL+ ++N + F ++I+ + IG K DL E D H+ S Sbjct: 303 LLVYDLNQGDDPLKLAQEYFAEHIEPRRLMLIGNKCDLTGQSAEISDYQGFRHITVSAKQ 362 Query: 349 E-GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDII 405 E G++ L++ I + F + + RHL +++T YL A L + G +++ Sbjct: 363 EMGVQGLVDAITA--HAGFHPEEDTFIARTRHLDAMTRTQLYLAEAREQLVVFNAG-ELV 419 Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 AE+LRLA +LG+ITG + LL IF FCIGK Sbjct: 420 AESLRLAQNALGEITGDFSADDLLGKIFGSFCIGK 454 >gi|170750474|ref|YP_001756734.1| tRNA modification GTPase TrmE [Methylobacterium radiotolerans JCM 2831] gi|205415796|sp|B1M0E0|MNME_METRJ RecName: Full=tRNA modification GTPase mnmE gi|170656996|gb|ACB26051.1| tRNA modification GTPase TrmE [Methylobacterium radiotolerans JCM 2831] Length = 441 Score = 290 bits (742), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 173/446 (38%), Positives = 265/446 (59%), Gaps = 11/446 (2%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG-LDGR 59 MN E +T+FA ++G +A+++IR+SGP+ V + + P PR+ SLR DG Sbjct: 1 MN-ETDTLFAPASGFGRAAVAVIRISGPAAGGVLATL-GGRLPTPRRLSLRSLRDPRDGT 58 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 LD+ L+ FP P++++GED AE H+HGG AV +L LA++P R A PG F+RRA Sbjct: 59 ELDRALVAWFPGPDTYSGEDMAELHLHGGAAVRMRVLATLARLPGCRAAEPGAFTRRAVL 118 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NG++DL EAE++ADLI +ETE QRR ++ + G LS W + + EA LDF+ Sbjct: 119 NGRMDLAEAEAVADLIDAETEGQRRQALRQLDGALSRQVAAWRAEAIDCLAAAEAALDFA 178 Query: 180 EEEDVQNFSSKEVLND-ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 +E DV + L D L++ +++ + G GE +R G+ +V+ G N+GKS+L NA Sbjct: 179 DEGDVDDAGLDAALFDRAARLRDAVAATLRDGHRGERLREGFTVVLAGAPNSGKSTLLNA 238 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L+++DVAIV+D PGTTRD + + LDL G V + DTAG+RET + +E +GI RT ++ Sbjct: 239 LSRRDVAIVSDSPGTTRDAIEVRLDLGGLPVLLVDTAGLRETAEPIEAQGIVRTRARIDT 298 Query: 299 ADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYS---TYTEEYDHLISSFTGEGLEELI 355 ADL++ L P + + TK+DL++ + D +S+ TG G+++L+ Sbjct: 299 ADLVVALVPPGGAVPDLGPGCRPILIVRTKADLFAGSQPAGDSADVTVSAHTGAGMDDLL 358 Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL-DIIAENLRLASV 414 + I++ + I + RH L V +L+ S + GL ++ AE+LRLA Sbjct: 359 DAIQAAAEDGLGTGDALI-TRARHRAALEACVAHLDRVSGSAG--GLPELAAEDLRLAVR 415 Query: 415 SLGKITGCVDVEQLLDIIFSKFCIGK 440 +LG++ G V VE +LD +FS FCIGK Sbjct: 416 ALGEVAGHVGVEDVLDRLFSGFCIGK 441 >gi|332873302|ref|ZP_08441257.1| tRNA modification GTPase TrmE [Acinetobacter baumannii 6014059] gi|332738508|gb|EGJ69380.1| tRNA modification GTPase TrmE [Acinetobacter baumannii 6014059] Length = 451 Score = 290 bits (742), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 174/455 (38%), Positives = 264/455 (58%), Gaps = 22/455 (4%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62 H + TI A++T + +IRLSGP + + + + +K P R A R F+ DG I+D Sbjct: 2 HSQTTIAAIATPPGRGGVGVIRLSGPKAYDIAQKLTQKNLPEARMAGFRKFYDADGSIMD 61 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 +G+++ FP+P SFTGED E HGG + N +L L ++ + A GEFS RAFENGK Sbjct: 62 EGIVLCFPNPHSFTGEDVVELQGHGGPVIQNALLGRLFELGAI-AAKAGEFSMRAFENGK 120 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 +DL++AE++ADLI + ++ R ++ + G S+ ++KL H+R +EA +DF EEE Sbjct: 121 MDLVQAEAIADLIDATSQAAARSAVRSLQGAFSTKINTVLEKLIHLRLHVEAAIDFPEEE 180 Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 + + ++L + ++ + + + + G+++R G ++VI G NAGKSSL NALA Sbjct: 181 -IDFLADGKILALLEDVQQSVHAVQTSARQGQLLREGLQVVIAGKPNAGKSSLLNALAGV 239 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 + AIVTDI GTTRDVL + L G + ++DTAG+RET D+VEKEGI+R E+E ADL+ Sbjct: 240 ERAIVTDIAGTTRDVLHEKISLNGLPITLTDTAGLRETGDVVEKEGIRRAIKEIEQADLL 299 Query: 303 LLLKEINSK------KEISFPKNID---FIFIGTKSDLYSTYTEEYD-----HLISSFTG 348 LL+ ++N + F ++I+ + IG K DL E D H+ S Sbjct: 300 LLVYDLNQGDDPLKLAQEYFAEHIEPRRLMLIGNKCDLTGQSAEISDYQGFRHITVSAKQ 359 Query: 349 E-GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDII 405 E G++ L++ I I F + + RHL + +T YL A L + G +++ Sbjct: 360 EMGVQGLVDAI--IAHAGFHPEEDTFIARTRHLDAMKRTQLYLAEAREQLVVFNAG-ELV 416 Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 AE+LRLA +LG+ITG + LL IF FCIGK Sbjct: 417 AESLRLAQNALGEITGDFSADDLLGKIFGSFCIGK 451 >gi|294648709|ref|ZP_06726169.1| tRNA modification GTPase TrmE family protein [Acinetobacter haemolyticus ATCC 19194] gi|292825384|gb|EFF84127.1| tRNA modification GTPase TrmE family protein [Acinetobacter haemolyticus ATCC 19194] Length = 454 Score = 290 bits (741), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 171/457 (37%), Positives = 265/457 (57%), Gaps = 23/457 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M H+ TI A++T + +IRLSG + + E + +K+ P R A+ R F+ +D + Sbjct: 4 MQHQT-TIAAIATPLGRGGVGVIRLSGSKAYMIAEQLTQKQLPNARMAAFRQFYDVDNSV 62 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+G+++ FP+P SFTGED E HGG + N +L L + A GEFS RAFEN Sbjct: 63 MDEGIILCFPNPHSFTGEDVVEIQGHGGPVIQNALLARLLDL-GATAAKAGEFSMRAFEN 121 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GK+DL++AE++ADLI + ++ R ++ + G S+ ++KL H+R +EA +DF E Sbjct: 122 GKMDLVQAEAIADLIDATSQAAARSAVRSLQGAFSTKINTVLEKLIHLRLHVEAAIDFPE 181 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + + ++L + +++ + + + G+++R G ++VI G NAGKSSL NALA Sbjct: 182 EE-IDFLADGKILALLDDVQDSVKAVQQSARQGQLLREGLQVVIAGKPNAGKSSLLNALA 240 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 + AIVTDI GTTRDVL + L G + ++DTAG+RET D+VE+EGI+R E+E AD Sbjct: 241 GHERAIVTDIAGTTRDVLHEKISLNGLPITLTDTAGLRETGDVVEREGIRRAIKEIEQAD 300 Query: 301 LILLLKEINSKKEI------SFPKNID---FIFIGTKSDLYSTYTEEYDHL------ISS 345 L+LL+ ++N E F +++ + IG K DL E D+ +S+ Sbjct: 301 LLLLVYDLNQGDEPLQLAHEYFADHLEPKRLLLIGNKCDLTGQPAEMTDYQGFRHIRVSA 360 Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLD 403 G++ LI+ I + F+ + + RHL + +T RYL A L + G + Sbjct: 361 KQDMGVQALIDAITA--HAGFQPEEDTFIARTRHLDAMKRTQRYLSEAREQLVVFNAG-E 417 Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++AE+LRLA +LG+ITG + LL IF FCIGK Sbjct: 418 LVAESLRLAQNALGEITGDFSADDLLGKIFGSFCIGK 454 >gi|75674297|ref|YP_316718.1| tRNA modification GTPase TrmE [Nitrobacter winogradskyi Nb-255] gi|123614357|sp|Q3SWH5|MNME_NITWN RecName: Full=tRNA modification GTPase mnmE gi|74419167|gb|ABA03366.1| tRNA modification GTPase trmE [Nitrobacter winogradskyi Nb-255] Length = 456 Score = 290 bits (741), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 171/464 (36%), Positives = 259/464 (55%), Gaps = 32/464 (6%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+ ++TIFA+S+G PSAI+++R SG + P R A G Sbjct: 1 MHPREQTIFALSSGRPPSAIAVVRASGSQAGTALRKLAGAI-PAARTAKRVLLRDSVGEA 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D +++ FP+P S TGED AEFHVHG AVVN ++ L+ + + R A PGEF+RRAFEN Sbjct: 60 IDDAVILWFPAPASATGEDIAEFHVHGSRAVVNALIAALSSIDDARAAEPGEFTRRAFEN 119 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GKIDL EAE L DLI ++T+ QRR ++ + G L W +L + IEA +DF++ Sbjct: 120 GKIDLTEAEGLDDLIHADTDRQRRQALRQLQGLLGDRARGWRKELIDASALIEAGIDFAD 179 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EEDV ++ L I L+ +I ++ GE +R+G + I G NAGKS+L N LA Sbjct: 180 EEDVPEDLARPALEKIAQLRREIEQTLAASARGERLRDGLTVAIAGPPNAGKSTLLNRLA 239 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 +++ AIV+ GTTRD++ + LDL+GY V + DTAGIRETDD VE+EG++R V AD Sbjct: 240 RREAAIVSPHAGTTRDIIEVYLDLDGYPVTLIDTAGIRETDDPVEQEGVRRARDRVAKAD 299 Query: 301 LILLLKE-------------------INSKKEISFPKNIDFIFIGTKSDLYSTYTEE--- 338 L+L L + I +K +++ P+N G K + T + Sbjct: 300 LVLWLSDDHGGEPDQTIRSGETSLWLIRNKIDLAGPEN-----DGAKPGRFETKAGQSAP 354 Query: 339 -YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLN 396 + IS+ G+G+++L++ + + + + RH L V L A +L Sbjct: 355 PWRFRISASRGDGVDDLVSALTAFAEKLLGSSEAGVITRLRHRNILRDAVASLAKAETLA 414 Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + G +++AE LR+A +G++ G VD++ +LD +F +FCIGK Sbjct: 415 GR--GDELVAEELRIAIHLMGRLLGRVDIDDILDSLFKEFCIGK 456 >gi|322506199|gb|ADX01653.1| TrmE [Acinetobacter baumannii 1656-2] Length = 451 Score = 289 bits (740), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 173/455 (38%), Positives = 264/455 (58%), Gaps = 22/455 (4%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62 H + TI A++T + +IRLSGP + + + + +K P R A R F+ DG I+D Sbjct: 2 HSQTTIAAIATPPGRGGVGVIRLSGPKAYDIAQKLTQKNLPEARMAGFRKFYDADGSIMD 61 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 +G+++ FP+P SFTGED E HGG + N +L L ++ + A GEFS RAFENGK Sbjct: 62 EGIVLCFPNPHSFTGEDVVELQGHGGPVIQNALLGRLFELGAI-AAKAGEFSMRAFENGK 120 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 +DL++AE++ADLI + ++ R ++ + G S+ ++KL H+R +EA +DF EEE Sbjct: 121 MDLVQAEAIADLIDATSQAAARSAVRSLQGAFSTKINTVLEKLIHLRLHVEAAIDFPEEE 180 Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 + + ++L + ++ + + + + G+++R G ++VI G NAGKSSL NALA Sbjct: 181 -IDFLADGKILALLEDVQQSVHAVQTSARQGQLLREGLQVVIAGKPNAGKSSLLNALAGV 239 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 + AIVTDI GTTRDVL + L G + ++DTAG+RET D+VEKEGI+R E+E ADL+ Sbjct: 240 ERAIVTDIAGTTRDVLHEKISLNGLPITLTDTAGLRETGDVVEKEGIRRAIKEIEQADLL 299 Query: 303 LLLKEINSK------KEISFPKNID---FIFIGTKSDLYSTYTEEYD-----HLISSFTG 348 LL+ ++N + F ++I+ + IG K DL E D H+ S Sbjct: 300 LLVYDLNQGDDPLKLAQEYFAEHIEPRRLMLIGNKCDLTGQSAEISDYQGFRHITVSAKQ 359 Query: 349 E-GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDII 405 E G++ L++ I + F + + RHL + +T YL A L + G +++ Sbjct: 360 EMGVQGLVDAITA--HAGFHPEEDTFIARTRHLDAMKRTQLYLAEAREQLVVFNAG-ELV 416 Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 AE+LRLA +LG+ITG + LL IF FCIGK Sbjct: 417 AESLRLAQNALGEITGDFSADDLLGKIFGSFCIGK 451 >gi|262374714|ref|ZP_06067986.1| tRNA modification GTPase TrmE [Acinetobacter junii SH205] gi|262310370|gb|EEY91462.1| tRNA modification GTPase TrmE [Acinetobacter junii SH205] Length = 454 Score = 289 bits (740), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 174/457 (38%), Positives = 265/457 (57%), Gaps = 23/457 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M H+ TI A++T + +IRLSGP + + E + K P R A R F+ DG + Sbjct: 4 MQHQT-TIAAIATPLGRGGVGVIRLSGPKAYAIAEQLTAKGLPAARMAGFRQFYDADGTV 62 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+G+++ FP+P SFTGED E HGG + N +L L + + A GEFS RAFEN Sbjct: 63 MDEGIVLCFPNPHSFTGEDVVEIQGHGGPVIQNALLARLLDLGAVA-AKAGEFSMRAFEN 121 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GK+DL++AE++ADLI + ++ R ++ + G S+ ++KL H+R +EA +DF E Sbjct: 122 GKMDLVQAEAIADLIDASSQAAARSAVRSLQGAFSTKINSVLEKLIHLRLHVEAAIDFPE 181 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + + ++L + ++N + + + G+++R G ++VI G NAGKSSL NALA Sbjct: 182 EE-IDFLADGKILALLDDVQNSVKAVQQSARQGQLLREGLQVVIAGKPNAGKSSLLNALA 240 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 + AIVTDI GTTRDVL + L G + ++DTAG+RET DIVE+EGI+R E+E AD Sbjct: 241 GHERAIVTDIAGTTRDVLHEKISLNGLPITLTDTAGLRETGDIVEREGIRRAIKEIEQAD 300 Query: 301 LILLLKEINSK------KEISFPKNID---FIFIGTKSDLYSTYTEEYDHL------ISS 345 L+LL+ ++N + F ++++ + IG K DL E D+ +S+ Sbjct: 301 LLLLVYDLNQNDDPLLLAQEYFAEHLEPKRLLLIGNKCDLTGQAAELSDYQGFRHIRVSA 360 Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLD 403 G++ LI+ I + F+ + + RHL + +T RYL A L + G + Sbjct: 361 KQDMGVQALIDAITA--HAGFQPEEDTFIARTRHLDAMKRTQRYLAEAREQLVVFNAG-E 417 Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++AE+LRLA +LG+ITG + LL IF FCIGK Sbjct: 418 LVAESLRLAQNALGEITGDFSADDLLGKIFGSFCIGK 454 >gi|192288728|ref|YP_001989333.1| tRNA modification GTPase TrmE [Rhodopseudomonas palustris TIE-1] gi|226704785|sp|B3Q8A8|MNME_RHOPT RecName: Full=tRNA modification GTPase mnmE gi|192282477|gb|ACE98857.1| tRNA modification GTPase TrmE [Rhodopseudomonas palustris TIE-1] Length = 441 Score = 289 bits (740), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 174/450 (38%), Positives = 256/450 (56%), Gaps = 19/450 (4%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+ +TIFA++TG LPSAI+I+R+SG V + P PR+A DG + Sbjct: 1 MHPSDQTIFALATGPLPSAIAILRVSGSRAGDVLRALTGSLPP-PRRAVRCDLRSRDGDL 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D G+ + FP+P S TGED AE H+HG AV +++ L+ +R A PGEF+RR FEN Sbjct: 60 IDDGVALWFPTPASATGEDVAELHIHGSRAVAAALIKTLSAFEGVRPAEPGEFTRRGFEN 119 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GK+DL EAE L DLI ++T+ QRR ++ + G L QW D++ + +EA +DFS+ Sbjct: 120 GKLDLTEAEGLDDLIHADTDAQRRQALRQLGGVLGDRARQWRDQIIEALALVEAGIDFSD 179 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E DV + I L +I+ +++ GE +R+G + I G N GKS+L N LA Sbjct: 180 EGDVADELMGPARAKIAELSAEIAEVLAEQGRGEKLRDGMVVAIAGPPNVGKSTLINRLA 239 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 +++VAIV+ GTTRDV+ I LDL+GY V + DTAG+R++DD VE+EG++R L AD Sbjct: 240 RREVAIVSPHAGTTRDVIEIQLDLDGYPVTVIDTAGLRDSDDPVEQEGVRRARLRAAAAD 299 Query: 301 LILLLKEINSKKEISFP--KNIDFIFIGTKSDLYSTYTEEYDH-----LISSFTGEGLEE 353 L+L L ++ + S P K + + K DL + E IS+ TGEG + Sbjct: 300 LVLWL---STATDASDPDVKGPEVWRVRNKIDLANGEVAESGPSQPVFRISAATGEGFAD 356 Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE---MASLNEKDCGLDIIAENLR 410 L+ ++ + F + + RH L+ L + L E +I+AE LR Sbjct: 357 LLRELTRFAAQYFGSAEAGLITRDRHRRLLADAAASLTRSLVPGLAE-----EIVAEELR 411 Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++ SLG++ G VDVE +L IF +FCIGK Sbjct: 412 ASAHSLGRLLGRVDVEDVLGEIFGRFCIGK 441 >gi|260558088|ref|ZP_05830299.1| tRNA modification GTPase TrmE [Acinetobacter baumannii ATCC 19606] gi|260408442|gb|EEX01749.1| tRNA modification GTPase TrmE [Acinetobacter baumannii ATCC 19606] Length = 454 Score = 289 bits (740), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 173/455 (38%), Positives = 264/455 (58%), Gaps = 22/455 (4%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62 H + TI A++T + +IRLSGP + + + + +K P R A R F+ DG I+D Sbjct: 5 HSQTTIAAIATPPGRGGVGVIRLSGPKAYDIAQKLTQKNLPEARMAGFRKFYDADGSIMD 64 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 +G+++ FP+P SFTGED E HGG + N +L L ++ + A GEFS RAFENGK Sbjct: 65 EGIVLCFPNPHSFTGEDVVELQGHGGPVIQNALLGRLFELGAI-AAKAGEFSMRAFENGK 123 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 +DL++AE++ADLI + ++ R ++ + G S+ ++KL H+R +EA +DF EEE Sbjct: 124 MDLVQAEAIADLIDATSQAAARSAVRSLQGAFSTKINTVLEKLIHLRLHVEAAIDFPEEE 183 Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 + + ++L + ++ + + + + G+++R G ++VI G NAGKSSL NALA Sbjct: 184 -IDFLADGKILALLEDVQQSVHAVQTSARQGQLLREGLQVVIAGKPNAGKSSLLNALAGV 242 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 + AIVTDI GTTRDVL + L G + ++DTAG+RET D+VEKEGI+R E+E ADL+ Sbjct: 243 ERAIVTDIAGTTRDVLHEKISLNGLPITLTDTAGLRETGDVVEKEGIRRAIKEIEQADLL 302 Query: 303 LLLKEINSK------KEISFPKNID---FIFIGTKSDLYSTYTEEYD-----HLISSFTG 348 LL+ ++N + F ++I+ + IG K DL E D H+ S Sbjct: 303 LLVYDLNQGDDPLKLAQEYFAEHIEPRRLMLIGNKCDLTGQSAEISDYQGFRHITVSAKQ 362 Query: 349 E-GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDII 405 E G++ L++ I + F + + RHL + +T YL A L + G +++ Sbjct: 363 EMGVQGLVDAITA--HAGFHPEEDTFIARTRHLDAMKRTQLYLAEAREQLVVFNAG-ELV 419 Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 AE+LRLA +LG+ITG + LL IF FCIGK Sbjct: 420 AESLRLAQNALGEITGDFSADDLLGKIFGSFCIGK 454 >gi|39933372|ref|NP_945648.1| tRNA modification GTPase TrmE [Rhodopseudomonas palustris CGA009] gi|81829794|sp|Q6ND14|MNME_RHOPA RecName: Full=tRNA modification GTPase mnmE gi|39652997|emb|CAE25739.1| putative GTPase involved in synthesis of 5-methylaminomethyl-2-thiouridine, found in the wobble position of some tRNA's [Rhodopseudomonas palustris CGA009] Length = 441 Score = 289 bits (740), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 172/450 (38%), Positives = 256/450 (56%), Gaps = 19/450 (4%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+ +TIFA++TG LPSAI+I+R+SG +V + P PR+A DG + Sbjct: 1 MHPSDQTIFALATGPLPSAIAIVRVSGSRAGEVLTALTGSLPP-PRRAVRCDLRSRDGDL 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D G+ + FP+P S TGED AE H+HG AV +++ L+ +R A PGEF+RR FEN Sbjct: 60 IDDGVALWFPTPASATGEDVAELHIHGSRAVAAALIKTLSAFEGVRPAEPGEFTRRGFEN 119 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GK+DL EAE L DLI ++T+ QRR ++ + G L +W D++ + +EA +DFS+ Sbjct: 120 GKLDLTEAEGLDDLIHADTDAQRRQALRQLGGVLGDRARRWRDQIIEALALVEAGIDFSD 179 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E DV + I L +I+ +++ GE +R+G + I G N GKS+L N LA Sbjct: 180 EGDVADELMGPARAKIAELSAEIAEVLAEQGRGEKLRDGMVVAIAGPPNVGKSTLINRLA 239 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 +++VAIV+ GTTRDV+ I LDL+GY V + DTAG+R++DD VE+EG++R AD Sbjct: 240 RREVAIVSPHAGTTRDVIEIQLDLDGYPVTVIDTAGLRDSDDPVEQEGVRRARSRAAAAD 299 Query: 301 LILLLKEINSKKEISFP--KNIDFIFIGTKSDLYSTYTEEYDH-----LISSFTGEGLEE 353 L+L L ++ + S P K + + K DL + E IS+ TGEG + Sbjct: 300 LVLWL---STATDASDPDVKGPEVWRVRNKIDLATGEVAESGPSQPVFRISAATGEGFAD 356 Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE---MASLNEKDCGLDIIAENLR 410 L+ ++ + F + + RH L+ L + L E +I+AE LR Sbjct: 357 LLRELTRFAAQYFGSAEAGLITRDRHRRLLADAAASLTRSLVPGLAE-----EIVAEELR 411 Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++ SLG++ G VDVE +L IF +FCIGK Sbjct: 412 ASAHSLGRLLGRVDVEDVLGEIFGRFCIGK 441 >gi|323516075|gb|ADX90456.1| tRNA modification GTPase TrmE [Acinetobacter baumannii TCDC-AB0715] Length = 451 Score = 289 bits (740), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 173/455 (38%), Positives = 264/455 (58%), Gaps = 22/455 (4%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62 H + TI A++T + +IRLSGP + + + + +K P R A R F+ DG I+D Sbjct: 2 HSQTTIAAIATPPGRGGVGVIRLSGPKAYDIAQKLTQKNLPEARLAGFRKFYDADGSIMD 61 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 +G+++ FP+P SFTGED E HGG + N +L L ++ + A GEFS RAFENGK Sbjct: 62 EGIVLCFPNPHSFTGEDVVELQGHGGPVIQNALLGRLFELGAI-AAKAGEFSMRAFENGK 120 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 +DL++AE++ADLI + ++ R ++ + G S+ ++KL H+R +EA +DF EEE Sbjct: 121 MDLVQAEAIADLIDATSQAAARSAVRSLQGAFSTKINTVLEKLIHLRLHVEAAIDFPEEE 180 Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 + + ++L + ++ + + + + G+++R G ++VI G NAGKSSL NALA Sbjct: 181 -IDFLADGKILALLEDVQQSVHAVQTSARQGQLLREGLQVVIAGKPNAGKSSLLNALAGV 239 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 + AIVTDI GTTRDVL + L G + ++DTAG+RET D+VEKEGI+R E+E ADL+ Sbjct: 240 ERAIVTDIAGTTRDVLHEKISLNGLPITLTDTAGLRETGDVVEKEGIRRAIKEIEQADLL 299 Query: 303 LLLKEINSK------KEISFPKNID---FIFIGTKSDLYSTYTEEYD-----HLISSFTG 348 LL+ ++N + F ++I+ + IG K DL E D H+ S Sbjct: 300 LLVYDLNQGDDPLKLAQEYFAEHIEPRRLMLIGNKCDLTGQSAEISDYQGFRHITVSAKQ 359 Query: 349 E-GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDII 405 E G++ L++ I + F + + RHL + +T YL A L + G +++ Sbjct: 360 EMGVQGLVDAITA--HAGFHPEEDTFIARTRHLDAMKRTQLYLAEAREQLVVFNAG-ELV 416 Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 AE+LRLA +LG+ITG + LL IF FCIGK Sbjct: 417 AESLRLAQNALGEITGDFSADDLLGKIFGSFCIGK 451 >gi|325123489|gb|ADY83012.1| tRNA modification GTPase [Acinetobacter calcoaceticus PHEA-2] Length = 451 Score = 289 bits (739), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 174/455 (38%), Positives = 265/455 (58%), Gaps = 22/455 (4%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62 + TI A++T + +IRLSGP +++ + + +K P R A R F+ DG I+D Sbjct: 2 QSQTTIAAIATPPGRGGVGVIRLSGPKAYEIAQNLTQKNLPEARMAGFRKFYDADGSIMD 61 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 +G+++ FP+P SFTGED E HGG + N +L L ++ + A GEFS RAFENGK Sbjct: 62 EGIVLCFPNPHSFTGEDVVEIQGHGGPVIQNALLGRLFELGAI-AAKAGEFSMRAFENGK 120 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 +DL++AE++ADLI + ++ R ++ + G S+ ++KL H+R +EA +DF EEE Sbjct: 121 MDLVQAEAIADLIDATSQAAARSAVRSLQGAFSTKINTVLEKLIHLRLHVEAAIDFPEEE 180 Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 + + ++L + ++ + + + + G+++R G ++VI G NAGKSSL NALA Sbjct: 181 -IDFLADGKILALLEDVQQSVHAVQTSARQGQLLREGLQVVIAGKPNAGKSSLLNALAGV 239 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 + AIVTDI GTTRDVL + L G + ++DTAG+RET DIVEKEGI+R E+E ADL+ Sbjct: 240 ERAIVTDIAGTTRDVLHEKISLNGLPITLTDTAGLRETGDIVEKEGIRRAIKEIEQADLL 299 Query: 303 LLLKEINSK------KEISFPKNID---FIFIGTKSDLYSTYTEEYD-----HLISSFTG 348 LL+ ++N + F ++I+ + IG K DL S E D H+ S Sbjct: 300 LLVYDLNQGDDPLKLAQEYFAEHIEPRRLMLIGNKCDLTSQLAELSDFQGFRHITVSAKQ 359 Query: 349 E-GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDII 405 E G++ L++ I + F + + RHL + +T YL A L + G +++ Sbjct: 360 EMGVQGLVDAITA--HAGFHPEEDTFIARTRHLDAMKRTQLYLSEAREQLVVFNAG-ELV 416 Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 AE+LRLA +LG+ITG + LL IF FCIGK Sbjct: 417 AESLRLAQNALGEITGDFSADDLLGKIFGSFCIGK 451 >gi|329847386|ref|ZP_08262414.1| tRNA modification GTPase TrmE [Asticcacaulis biprosthecum C19] gi|328842449|gb|EGF92018.1| tRNA modification GTPase TrmE [Asticcacaulis biprosthecum C19] Length = 443 Score = 289 bits (739), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 171/446 (38%), Positives = 262/446 (58%), Gaps = 16/446 (3%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TIFA+++ + +SI+RLSGP F + + K P P + ++ DG ++D+ + Sbjct: 3 QTIFALASAQGRAGVSILRLSGPDAFSALQRLTDK--PVPARRAVFTALVHDGELIDEAV 60 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 ++ F P SFTGED E HVHG A+++ + LA+M LRLA PGEFSRRA ENGK+DL Sbjct: 61 VLFFQGPNSFTGEDCVELHVHGSRAILDRLYVILAEM-GLRLAQPGEFSRRALENGKLDL 119 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADL+ +E+E QRR ++ M G L + Y W L I + IE +DF +E D+ Sbjct: 120 TQAEAIADLVDAESEAQRRQALTQMGGGLKTQYEAWHAALVDILARIEVYIDFPDE-DLP 178 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 +L+ + ++ + + I+ K G IR G++IVILG NAGKSSLFNAL K + A Sbjct: 179 TELVDSILDRMAAVQASLEAAIADAKRGRQIREGFRIVILGEPNAGKSSLFNALLKAETA 238 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVT I GTTRDV+ +L + Y V + DTAG+RET ++VE+EGI+R + + ADL L + Sbjct: 239 IVTPIAGTTRDVIEAELRIGPYSVLLYDTAGLRETAEVVEREGIRRARAKGDEADLRLWV 298 Query: 306 KEINSKK----EISFPKNIDFIFIGTKSD-LYSTYTE-EYDHLISSF-----TGEGLEEL 354 + ++ E + F I SD LY ++ + + S+F TG+G++EL Sbjct: 299 IDSSASGLDGVESRAGDLVAFNKIDQGSDNLYESFKDADVSRGTSAFKVSVATGQGIDEL 358 Query: 355 INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASV 414 + ++S+++ + F + RH L V +L+ A L ++ AE++R + Sbjct: 359 VRALESVVTKRLSVQTFPAATRARHFERLQDAVDHLDHARLTRMRVP-ELTAEHVRGSIN 417 Query: 415 SLGKITGCVDVEQLLDIIFSKFCIGK 440 S + G DVE +LD++FS FCIGK Sbjct: 418 SFEALFGRYDVEGILDVVFSTFCIGK 443 >gi|184156330|ref|YP_001844669.1| tRNA modification GTPase TrmE [Acinetobacter baumannii ACICU] gi|183207924|gb|ACC55322.1| predicted GTPase [Acinetobacter baumannii ACICU] Length = 451 Score = 289 bits (739), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 173/455 (38%), Positives = 264/455 (58%), Gaps = 22/455 (4%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62 H + TI A++T + +IRLSGP + + + + +K P R A R F+ DG I+D Sbjct: 2 HSQTTIAAIATPPGRGGVGVIRLSGPKAYDIAQKLTQKNLPEARMAGFRKFYDADGSIMD 61 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 +G+++ FP+P SFTGED E HGG + N +L L ++ + A GEFS RAFENGK Sbjct: 62 EGIVLCFPNPHSFTGEDVVELQSHGGPVIQNALLGRLFELGAI-AAKAGEFSMRAFENGK 120 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 +DL++AE++ADLI + ++ R ++ + G S+ ++KL H+R +EA +DF EEE Sbjct: 121 MDLVQAEAIADLIDATSQAAARSAVRSLQGAFSTKINTVLEKLIHLRLHVEAAIDFPEEE 180 Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 + + ++L + ++ + + + + G+++R G ++VI G NAGKSSL NALA Sbjct: 181 -IDFLADGKILALLEDVQQSVHAVQTSARQGQLLREGLQVVIAGKPNAGKSSLLNALAGV 239 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 + AIVTDI GTTRDVL + L G + ++DTAG+RET D+VEKEGI+R E+E ADL+ Sbjct: 240 ERAIVTDIAGTTRDVLHEKISLNGLPITLTDTAGLRETGDVVEKEGIRRAIKEIEQADLL 299 Query: 303 LLLKEINSK------KEISFPKNID---FIFIGTKSDLYSTYTEEYD-----HLISSFTG 348 LL+ ++N + F ++I+ + IG K DL E D H+ S Sbjct: 300 LLVYDLNQGDDPLKLAQEYFAEHIEPRRLMLIGNKCDLTGQPAEISDYQGFRHITVSAKQ 359 Query: 349 E-GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDII 405 E G++ L++ I + F + + RHL + +T YL A L + G +++ Sbjct: 360 EMGVQGLVDAITA--HAGFHPEEDTFIARTRHLDAMKRTQLYLAEAREQLVVFNAG-ELV 416 Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 AE+LRLA +LG+ITG + LL IF FCIGK Sbjct: 417 AESLRLAQNALGEITGDFSADDLLGKIFGSFCIGK 451 >gi|169797809|ref|YP_001715602.1| tRNA modification GTPase TrmE [Acinetobacter baumannii AYE] gi|205829063|sp|B0V5S5|MNME_ACIBY RecName: Full=tRNA modification GTPase mnmE gi|169150736|emb|CAM88648.1| GTPase involved in tRNA modification and in thiophene and furan oxidation [Acinetobacter baumannii AYE] Length = 454 Score = 289 bits (739), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 174/455 (38%), Positives = 264/455 (58%), Gaps = 22/455 (4%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62 H + TI A++T + +IRLSGP + + + + +K P R A R F+ DG I+D Sbjct: 5 HSQTTIAAIATPPGRGGVGVIRLSGPKAYDIAQKLTQKNLPEARMAGFRKFYDTDGSIMD 64 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 +G+++ FP+P SFTGED E HGG + N +L L ++ + A GEFS RAFENGK Sbjct: 65 EGIVLCFPNPHSFTGEDVVELQGHGGPVIQNALLGRLFELGAI-AAKAGEFSMRAFENGK 123 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 +DL++AE++ADLI + ++ R ++ + G S+ ++KL H+R +EA +DF EEE Sbjct: 124 MDLVQAEAIADLIDATSQAAARSAVRSLQGAFSTKINTVLEKLIHLRLHVEAAIDFPEEE 183 Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 + + ++L + ++ + + + + G+++R G ++VI G NAGKSSL NALA Sbjct: 184 -IDFLADGKILALLEDVQQSVHAVQTSARQGQLLREGLQVVIAGKPNAGKSSLLNALAGV 242 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 + AIVTDI GTTRDVL + L G + ++DTAG+RET DIVEKEGI+R E+E ADL+ Sbjct: 243 ERAIVTDIAGTTRDVLHEKISLNGLPITLTDTAGLRETGDIVEKEGIRRAIKEIEQADLL 302 Query: 303 LLLKEINSK------KEISFPKNID---FIFIGTKSDLYSTYTEEYD-----HLISSFTG 348 LL+ ++N + F ++I+ + IG K DL E D H+ S Sbjct: 303 LLVYDLNQGDDPLKLAQEYFSEHIEPRRLMLIGNKCDLTGQSAEISDYQGFRHITVSAKQ 362 Query: 349 E-GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDII 405 E G++ L++ I + F + + RHL + +T YL A L + G +++ Sbjct: 363 EMGVQGLVDAITA--HAGFHPEEDTFIARTRHLDAMKRTQLYLAEAREQLVIFNAG-ELV 419 Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 AE+LRLA +LG+ITG + LL IF FCIGK Sbjct: 420 AESLRLAQNALGEITGDFSADDLLGKIFGSFCIGK 454 >gi|262281557|ref|ZP_06059336.1| tRNA modification GTPase mnmE [Acinetobacter calcoaceticus RUH2202] gi|262257016|gb|EEY75755.1| tRNA modification GTPase mnmE [Acinetobacter calcoaceticus RUH2202] Length = 454 Score = 289 bits (739), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 173/453 (38%), Positives = 264/453 (58%), Gaps = 22/453 (4%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64 + TI A++T + +IRLSGP +++ + + +K P R A R F+ +DG I+D+G Sbjct: 7 QTTIAAIATPPGRGGVGVIRLSGPKAYEIAQNLTQKNLPEARMAGFRKFYDVDGSIMDEG 66 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 +++ FP+P SFTGED E HGG + N +L L ++ + A GEFS RAFENGK+D Sbjct: 67 IVLCFPNPHSFTGEDVVELQGHGGPVIQNALLGRLFELGAIA-AKAGEFSMRAFENGKMD 125 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L++AE++ADLI + ++ R ++ + G S+ ++KL H+R +EA +DF EEE + Sbjct: 126 LVQAEAIADLIDATSQAAARSAVRSLQGAFSTKINTVLEKLIHLRLHVEAAIDFPEEE-I 184 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + ++L + ++ + + + + G+++R G ++VI G NAGKSSL NALA + Sbjct: 185 DFLADGKILALLENVQQSVHAVQTSARQGQLLREGLQVVIAGKPNAGKSSLLNALAGVER 244 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIVTDI GTTRDVL + L G + ++DTAG+RET DIVEKEGI+R E+E ADL+LL Sbjct: 245 AIVTDIAGTTRDVLHEKISLNGLPITLTDTAGLRETGDIVEKEGIRRAIKEIEQADLLLL 304 Query: 305 LKEINSK------KEISFPKNID---FIFIGTKSDLYSTYTEEYD-----HLISSFTGE- 349 + ++N + F ++I+ + IG K DL E D H+ S E Sbjct: 305 VYDLNQGDDPLKLAQEYFAEHIEPRRLMLIGNKCDLTGQLAEISDFQGFRHITVSAKQEM 364 Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAE 407 G++ L+ I + F + + RHL + +T YL A L + G +++AE Sbjct: 365 GVQGLVEAITA--HAGFHPEEDTFIARTRHLDAMKRTQLYLSEAHEQLVVFNAG-ELVAE 421 Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +LRLA +LG+ITG + LL IF FCIGK Sbjct: 422 SLRLAQNALGEITGDFSADDLLGKIFGSFCIGK 454 >gi|215485156|ref|YP_002327397.1| tRNA modification GTPase TrmE [Acinetobacter baumannii AB307-0294] gi|301345950|ref|ZP_07226691.1| tRNA modification GTPase TrmE [Acinetobacter baumannii AB056] gi|301510087|ref|ZP_07235324.1| tRNA modification GTPase TrmE [Acinetobacter baumannii AB058] gi|301594675|ref|ZP_07239683.1| tRNA modification GTPase TrmE [Acinetobacter baumannii AB059] gi|332854708|ref|ZP_08435495.1| tRNA modification GTPase TrmE [Acinetobacter baumannii 6013150] gi|332865588|ref|ZP_08436428.1| tRNA modification GTPase TrmE [Acinetobacter baumannii 6013113] gi|213988539|gb|ACJ58838.1| tRNA modification GTPase TrmE [Acinetobacter baumannii AB307-0294] gi|332727865|gb|EGJ59267.1| tRNA modification GTPase TrmE [Acinetobacter baumannii 6013150] gi|332735240|gb|EGJ66317.1| tRNA modification GTPase TrmE [Acinetobacter baumannii 6013113] Length = 451 Score = 289 bits (739), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 174/455 (38%), Positives = 264/455 (58%), Gaps = 22/455 (4%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62 H + TI A++T + +IRLSGP + + + + +K P R A R F+ DG I+D Sbjct: 2 HSQTTIAAIATPPGRGGVGVIRLSGPKAYDIAQKLTQKNLPEARMAGFRKFYDTDGSIMD 61 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 +G+++ FP+P SFTGED E HGG + N +L L ++ + A GEFS RAFENGK Sbjct: 62 EGIVLCFPNPHSFTGEDVVELQGHGGPVIQNALLGRLFELGAI-AAKAGEFSMRAFENGK 120 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 +DL++AE++ADLI + ++ R ++ + G S+ ++KL H+R +EA +DF EEE Sbjct: 121 MDLVQAEAIADLIDATSQAAARSAVRSLQGAFSTKINTVLEKLIHLRLHVEAAIDFPEEE 180 Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 + + ++L + ++ + + + + G+++R G ++VI G NAGKSSL NALA Sbjct: 181 -IDFLADGKILALLEDVQQSVHAVQTSARQGQLLREGLQVVIAGKPNAGKSSLLNALAGV 239 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 + AIVTDI GTTRDVL + L G + ++DTAG+RET DIVEKEGI+R E+E ADL+ Sbjct: 240 ERAIVTDIAGTTRDVLHEKISLNGLPITLTDTAGLRETGDIVEKEGIRRAIKEIEQADLL 299 Query: 303 LLLKEINSK------KEISFPKNID---FIFIGTKSDLYSTYTEEYD-----HLISSFTG 348 LL+ ++N + F ++I+ + IG K DL E D H+ S Sbjct: 300 LLVYDLNQGDDPLKLAQEYFSEHIEPRRLMLIGNKCDLTGQSAEISDYQGFRHITVSAKQ 359 Query: 349 E-GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDII 405 E G++ L++ I + F + + RHL + +T YL A L + G +++ Sbjct: 360 EMGVQGLVDAITA--HAGFHPEEDTFIARTRHLDAMKRTQLYLAEAREQLVIFNAG-ELV 416 Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 AE+LRLA +LG+ITG + LL IF FCIGK Sbjct: 417 AESLRLAQNALGEITGDFSADDLLGKIFGSFCIGK 451 >gi|193082993|ref|NP_001122327.1| tRNA modification GTPase GTPBP3, mitochondrial isoform III [Homo sapiens] Length = 471 Score = 288 bits (738), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 171/445 (38%), Positives = 253/445 (56%), Gaps = 19/445 (4%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFF-GLDGRILDKG 64 TIFA+S+G I++IR SGP+ + + P R ASLR G LD+ Sbjct: 35 TIFALSSGQGRCGIAVIRTSGPASGHALRILTAPRDLPLARHASLRLLSDPRSGEPLDRA 94 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 L++ FP P+SFTGED EFHVHGG AVV+G+L+ L +P LR A GEF+RRAF NGK++ Sbjct: 95 LVLWFPGPQSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFANGKLN 154 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L E E LADLI +ETE QRR ++ + GEL L W + LT + +EA +DF E++++ Sbjct: 155 LTEVEGLADLIHAETEAQRRQALRQLDGELGHLCRGWAETLTKALAHVEAYIDFGEDDNL 214 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + ++ ++ L+ + +H+ + G+ +R+G +V+ G NAGKSSL N L++K V Sbjct: 215 EEGVLEQADIEVRALQVALGAHLRDARRGQRLRSGVHVVVTGPPNAGKSSLVNLLSRKPV 274 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD-LIL 303 +IV+ PGTTRDVL +DL G+ V +SDTAG+RE VE+EG++R E+ + L Sbjct: 275 SIVSPEPGTTRDVLETPVDLAGFPVLLSDTAGLREGVGPVEQEGVRRAR---ESCNFLAT 331 Query: 304 LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFTGEGLEELINK 357 ++ + ++ + + + KSDL S L+S TGEGL+ L+ Sbjct: 332 VVASVGAQSPSDSSQRLLLVL--NKSDLLSPEGPGPGPDLPPHLLLSCLTGEGLDGLLEA 389 Query: 358 IKSILSNKFKKLPFSIP--SHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVS 415 ++ L+ P + RH +HL + L KD L + AE LR+A Sbjct: 390 LRKELAAVCGDPSTDPPLLTRARHQHHLQGCLDALGHYK-QSKD--LALAAEALRVARGH 446 Query: 416 LGKITGCVDVEQLLDIIFSKFCIGK 440 L ++TG E++LDIIF FC+GK Sbjct: 447 LTRLTGGGGTEEILDIIFQDFCVGK 471 >gi|316931724|ref|YP_004106706.1| tRNA modification GTPase TrmE [Rhodopseudomonas palustris DX-1] gi|315599438|gb|ADU41973.1| tRNA modification GTPase TrmE [Rhodopseudomonas palustris DX-1] Length = 442 Score = 288 bits (738), Expect = 9e-76, Method: Compositional matrix adjust. Identities = 174/452 (38%), Positives = 250/452 (55%), Gaps = 22/452 (4%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+ +TIFA++TG LPSAI+I RLSGP V + P PR+A G + Sbjct: 1 MHPSDQTIFALATGPLPSAIAIFRLSGPQAGNVVTALTGSL-PAPRRAVRCDLRNRSGEM 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D G+ + FP P S TGED AE H+HG AV +++ L+ +R A PGEF+RRAFEN Sbjct: 60 IDDGVALWFPGPASATGEDVAELHIHGSRAVAAALIKTLSAFEGVRPAEPGEFTRRAFEN 119 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GK+DL EAE L DLI ++TE+QRR ++ + G L +W D++ + +EA +DFS+ Sbjct: 120 GKLDLTEAEGLDDLIHADTEVQRRQALRQLQGVLGDRARRWRDQIIEALALVEAGIDFSD 179 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E DV I L +I+ +++ GE +R+G + I G N GKS+L N LA Sbjct: 180 EGDVAADLMAPARAKIAALSAEIAEVLAEQGQGEKLRDGMVVAIAGPPNVGKSTLINRLA 239 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++DVAIV+ GTTRDV+ + LDL GY V + DTAG+R++DD +E+EG++R AD Sbjct: 240 RRDVAIVSPHAGTTRDVIEVHLDLGGYPVTVIDTAGLRDSDDPIEQEGVRRARARAAAAD 299 Query: 301 LILLLKEIN--SKKEISFPKNIDFIFIGTKSDLYST------YTEEYDHLISSFTGEGLE 352 L+L L S ++S P + + K DL T + + D IS+ +GEG+ Sbjct: 300 LVLWLSTPTDASDPDLSGP---EVWRVRNKIDLAKTDAGRKKGSSDADFRISASSGEGVG 356 Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRH----LYHLSQTVRYLEMASLNEKDCGLDIIAEN 408 L+ ++ + F + + RH + R L E I+AE Sbjct: 357 GLLRELTQFAAQYFASAEAGLITRDRHRLLLADAGAALGRSLAPGLAEE------IVAEE 410 Query: 409 LRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LR AS LG++ G VDVE +L IF +FCIGK Sbjct: 411 LRAASHDLGRLLGRVDVEDVLGEIFGRFCIGK 442 >gi|13786073|gb|AAK39556.1| mitochondrial GTP binding protein 2 [Homo sapiens] gi|13786075|gb|AAK39557.1| mitochondrial GTP binding protein 3 [Homo sapiens] Length = 471 Score = 288 bits (738), Expect = 9e-76, Method: Compositional matrix adjust. Identities = 171/445 (38%), Positives = 253/445 (56%), Gaps = 19/445 (4%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFF-GLDGRILDKG 64 TIFA+S+G I++IR SGP+ + + P R ASLR G LD+ Sbjct: 35 TIFALSSGQGRCGIAVIRTSGPASGHALRILTAPRDLPLARHASLRLLSDPRSGEPLDRA 94 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 L++ FP P+SFTGED EFHVHGG AVV+G+L+ L +P LR A GEF+RRAF NGK++ Sbjct: 95 LVLWFPGPQSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFANGKLN 154 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L E E LADLI +ETE QRR ++ + GEL L W + LT + +EA +DF E++++ Sbjct: 155 LTEVEGLADLIHAETEAQRRQALRQLDGELGHLCRGWAETLTKALAHVEAYIDFGEDDNL 214 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + ++ ++ L+ + +H+ + G+ +R+G +V+ G NAGKSSL N L++K V Sbjct: 215 EEGVLEQADIEVRALQVALGAHLRDARRGQRLRSGAHVVVTGPPNAGKSSLVNLLSRKPV 274 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD-LIL 303 +IV+ PGTTRDVL +DL G+ V +SDTAG+RE VE+EG++R E+ + L Sbjct: 275 SIVSPEPGTTRDVLETPVDLAGFPVLLSDTAGLREGVGPVEQEGVRRAR---ESCNFLAT 331 Query: 304 LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFTGEGLEELINK 357 ++ + ++ + + + KSDL S L+S TGEGL+ L+ Sbjct: 332 VVASVGAQSPSDSSQRLLLVL--NKSDLLSPEGPGPGPDLPPHLLLSCLTGEGLDGLLEA 389 Query: 358 IKSILSNKFKKLPFSIP--SHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVS 415 ++ L+ P + RH +HL + L KD L + AE LR+A Sbjct: 390 LRKELAAVCGDPSTDPPLLTRARHQHHLQGCLDALGHYK-QSKD--LALAAEALRVARGH 446 Query: 416 LGKITGCVDVEQLLDIIFSKFCIGK 440 L ++TG E++LDIIF FC+GK Sbjct: 447 LTRLTGGGGTEEILDIIFQDFCVGK 471 >gi|84501195|ref|ZP_00999400.1| tRNA modification GTPase [Oceanicola batsensis HTCC2597] gi|84390486|gb|EAQ02974.1| tRNA modification GTPase [Oceanicola batsensis HTCC2597] Length = 426 Score = 288 bits (738), Expect = 9e-76, Method: Compositional matrix adjust. Identities = 169/437 (38%), Positives = 257/437 (58%), Gaps = 14/437 (3%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TIFA +T + ++I+RLSGP +Q + P PR+ +LR G +G +LD+GL Sbjct: 2 DTIFAQATAPGKAGVAIVRLSGPRAWQAVSELSGPL-PAPRRVALRTIAGPEG-VLDEGL 59 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 +++F SFTGE AE +HG AVV +L+ L+ M LR A PGEF+RRA ENG +DL Sbjct: 60 VLIFEEGASFTGEKVAELQLHGSTAVVEAVLKVLSDMEELRSAEPGEFTRRALENGCLDL 119 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 + E LADLI +ETE QR+ + ++GEL W L + IEA +DF++EE V Sbjct: 120 AQVEGLADLIDAETEAQRKQAQRVLAGELGEKAEAWRRDLIRAAALIEATIDFADEE-VP 178 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 + EVL+ + ++N +S + + E +R G+++ I+G N GKSSL NALA ++ A Sbjct: 179 TDVTPEVLSLLHDVRNGLSREAAGVGIAERVRQGFEVAIVGAPNVGKSSLLNALAGREAA 238 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 I +++ GTTRDV+ + +DL G V + DTAG+R+TDD+VE G++R ADL + L Sbjct: 239 ITSEVAGTTRDVIEVRMDLAGLPVTVLDTAGLRDTDDVVETIGVERARERAAVADLRVFL 298 Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365 + +FP I +K+D+ E +S+ TG GL +L+ +I LS+ Sbjct: 299 VFLGEAP--AFPPGPKDIVRVSKADVVG----EAAGRVSAETGYGLTDLVAEISGKLSDM 352 Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LNEKDCGLDIIAENLRLASVSLGKITGCV 423 + S+ + +RH L + + +L+ A+ L E+ +++ AE +R A +L + G V Sbjct: 353 LGR--SSVATRERHRIALERAMDFLDAANQVLTER-GDMEVAAEEIRSAIRALESLVGRV 409 Query: 424 DVEQLLDIIFSKFCIGK 440 DVE LLD IF+ FCIGK Sbjct: 410 DVEMLLDDIFASFCIGK 426 >gi|239503914|ref|ZP_04663224.1| tRNA modification GTPase TrmE [Acinetobacter baumannii AB900] Length = 451 Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 173/455 (38%), Positives = 264/455 (58%), Gaps = 22/455 (4%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62 H + TI A++T + +IRLSGP + + + + +K P R A R F+ DG I+D Sbjct: 2 HSQTTIAAIATPPGRGGVGVIRLSGPKAYDIAQKLTQKNLPEARMAGFRKFYDTDGSIMD 61 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 +G+++ FP+P SFTGED E HGG + N +L L ++ + A GEFS RAFENGK Sbjct: 62 EGIVLCFPNPHSFTGEDVVELQGHGGPVIQNALLGRLFELGAI-AAKAGEFSMRAFENGK 120 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 +DL++AE++ADLI + ++ R ++ + G S+ ++KL H+R +EA +DF EEE Sbjct: 121 MDLVQAEAIADLIDATSQAAARSAVRSLQGAFSTKINTVLEKLIHLRLHVEAAIDFPEEE 180 Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 + + ++L + ++ + + + + G+++R G ++VI G NAGKSSL NALA Sbjct: 181 -IDFLADGKILALLEDVQQSVHAVQTSARQGKLLREGLQVVIAGKPNAGKSSLLNALAGV 239 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 + AIVTDI GTTRDVL + L G + ++DTAG+RET D+VEKEGI+R E+E ADL+ Sbjct: 240 ERAIVTDIAGTTRDVLHEKISLNGLPITLTDTAGLRETGDVVEKEGIRRAIKEIEQADLL 299 Query: 303 LLLKEINSK------KEISFPKNID---FIFIGTKSDLYSTYTEEYD-----HLISSFTG 348 LL+ ++N + F ++I+ + IG K DL E D H+ S Sbjct: 300 LLVYDLNQGDDPLKLAQEYFAEHIEPRRLMLIGNKCDLTGQSAEISDYQGFRHITVSAKQ 359 Query: 349 E-GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDII 405 E G++ L++ I + F + + RHL + +T YL A L + G +++ Sbjct: 360 EMGVQGLVDAITA--HAGFHPEEDTFIARTRHLDAMKRTQLYLAEAREQLVVFNAG-ELV 416 Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 AE+LRLA +LG+ITG + LL IF FCIGK Sbjct: 417 AESLRLAQNALGEITGDFSADDLLGKIFGSFCIGK 451 >gi|88607072|ref|YP_505803.1| tRNA modification GTPase TrmE [Anaplasma phagocytophilum HZ] gi|123494246|sp|Q2GIJ8|MNME_ANAPZ RecName: Full=tRNA modification GTPase mnmE gi|88598135|gb|ABD43605.1| tRNA modification GTPase TrmE [Anaplasma phagocytophilum HZ] Length = 445 Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 171/451 (37%), Positives = 265/451 (58%), Gaps = 18/451 (3%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 + + +TIFA+ST S +++IR+SGPS + + K PR A R GR+ Sbjct: 2 VKRQTDTIFALSTAQGKSGVAVIRISGPSSMEALRLLGVKDDISPRVAHCRLLHDSKGRL 61 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+ +++ FP P SFTGED E VHG AV+ + EEL +R+A PGEFS RA+ N Sbjct: 62 IDQAVVLYFPKPGSFTGEDVVELQVHGSRAVIRLLYEELQTF--IRIAEPGEFSLRAYLN 119 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GKIDL AE +ADLI++ET+ Q R ++ +G+L Y QW L I + +EA +DF E Sbjct: 120 GKIDLTRAEGIADLINAETDAQLRQALAQSTGKLEKQYDQWRSILLDILTDLEACIDFPE 179 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 + D + N+I L + +++ G GE +R+G ++VILG NAGKS+LFN++A Sbjct: 180 DVDSSCVLGG-IYNNIEKLCAVLGQYLNDGHRGERLRSGVRVVILGPPNAGKSTLFNSIA 238 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 +++ AIV++ PGTTRDVL + +D+ GY + DTAGIRE+ D +E+EGIKR + E AD Sbjct: 239 RRNAAIVSEHPGTTRDVLEVAIDIGGYPYIVLDTAGIRESCDGIEQEGIKRAKMAAEEAD 298 Query: 301 LILL--------LKEINSKKEISFPKNIDFIFIGTKSDLYSTYT---EEYDHLISSFTGE 349 + ++ ++ I+ ++ K I + DL + +E+ HLIS Sbjct: 299 IKIVMYPYETTSMQGIDPICDLQDEKTILVLSKADNVDLPESKCIDGKEF-HLISVHQDR 357 Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENL 409 G+ +L+ I+ + F + + +RH HL + ++ ++ S K ++I+AE+L Sbjct: 358 GIGKLLTLIQEKSRDSFPQEGDVFITSQRHRSHLQKALQVVDAVS---KVMPIEIVAEHL 414 Query: 410 RLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 R+A+ LG++TG V + +LD IFSKFCIGK Sbjct: 415 RIAAYELGRVTGAVSGDDILDDIFSKFCIGK 445 >gi|328793826|ref|XP_001121197.2| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial-like [Apis mellifera] Length = 488 Score = 288 bits (736), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 181/463 (39%), Positives = 268/463 (57%), Gaps = 36/463 (7%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR-ILDKGL 65 TI+A+S+G +++IR+SGP + + K K PR A L+ + + + +LD+GL Sbjct: 33 TIYALSSGYGKCGVAVIRISGPKALIALKRMTKISKLIPRMALLKKIYDPETKEMLDRGL 92 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + FP P SFTGED EFHVHGG AV+ IL LAK+ + +LA PGEF+RRAF NGK+DL Sbjct: 93 CLWFPGPNSFTGEDCIEFHVHGGPAVITSILNALAKL-HFQLAFPGEFTRRAFLNGKLDL 151 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 EAE + DLI +ETE QR+ + G L +Y W L +I + +EA +DF+EE +V Sbjct: 152 TEAEGIGDLIEAETEKQRKQASNQTIGSLYHIYESWRIILLNILANLEAYIDFAEEHNVT 211 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 + ++ +I L I H+S + GEI+R+G + ILG N GKSS N L+KK+ A Sbjct: 212 SNILEDTKINIQKLYVKIQQHLSDERKGEILRSGIHVAILGKPNVGKSSFLNLLSKKNAA 271 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET-DDIVEKEGIKRTFLEVENADLILL 304 IVT +PGTTRD++ + +D+ GY + ++DTAGIR ++ +E EGIK+T + AD I+ Sbjct: 272 IVTSLPGTTRDIIELTIDICGYPMILADTAGIRNNPENEIEIEGIKKTKEYSKKADFIIC 331 Query: 305 L---------------------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI 343 + EI+ K+ + ID I K D ++ ++ I Sbjct: 332 IISAENNVKTSLEDFLKQYKNFLEIDKKRVLLILNKIDLI----KEDEIESWRKQNVIPI 387 Query: 344 SSFTGEGLEELINKI----KSILSNKFKKLP-FSIPSHKRHLYHLSQTVR-YLEMASLNE 397 S T EGL+ELIN + + I N K+ P S ++ HL H+ ++ YLE + Sbjct: 388 SCKTQEGLKELINALGQCFEEICGNPCKESPVISHARYRNHLLHVLDYLKYYLEKTKIPN 447 Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D + + +++R A+ LGKITG ++ E++LDIIF FCIGK Sbjct: 448 YDMAISL--QDIRNAARELGKITGSINNEEVLDIIFKNFCIGK 488 >gi|237809900|ref|YP_002894340.1| tRNA modification GTPase TrmE [Tolumonas auensis DSM 9187] gi|237502161|gb|ACQ94754.1| tRNA modification GTPase TrmE [Tolumonas auensis DSM 9187] Length = 453 Score = 288 bits (736), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 175/453 (38%), Positives = 263/453 (58%), Gaps = 21/453 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A++T I I+R+SGP C V E + K P R A L F +DG+ LD+G+ Sbjct: 4 DTIVALATPPGRGGIGILRISGPLCKLVAEQVLGKI-PKVRHAELLPFCDVDGKALDQGI 62 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 ++F +P SFTGED E HGG V++ +L + + +RLA PGEFS RAF N K+DL Sbjct: 63 ALLFKAPYSFTGEDVLELQGHGGPVVLDMLLRRILTINGVRLARPGEFSERAFMNDKLDL 122 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E R +M+ + GE S+ Q +D LT++R ++EA +DF EEE + Sbjct: 123 AQAEAIADLIEATSEQAARSAMQSLQGEFSTRIHQLVDSLTNLRIYVEAAIDFPEEE-ID 181 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S + N + + +D++ + + G ++R+G K+VI G NAGKSSL NALA ++ A Sbjct: 182 FLSDGRIANALYGVMDDLAQVKREAQQGALLRDGMKVVIAGRPNAGKSSLLNALAGRESA 241 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVT+I GTTRDVL + L+G + I DTAG+R+TDD VEK GI+R + E+E AD +L + Sbjct: 242 IVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTDDTVEKIGIERAWAEIEQADRVLFM 301 Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYS---TYTEEYDHL---ISSFTG 348 + + + P+N+ + K+DL T +EE + IS+ TG Sbjct: 302 VDGTTTDARNPHDLWPDFVDRLPENLGITVVRNKADLTGEALTVSEENGYAVYPISAKTG 361 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407 GL+ L +K+ + + L + +RHL + + L+ A + E +++AE Sbjct: 362 LGLDALREHLKACMGFQ-STLEGGFIARRRHLDAIERASERLDEAKVQLEIYLAGELVAE 420 Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LRLA +L +ITG + LL IFS FCIGK Sbjct: 421 ELRLAQEALSEITGAFSADDLLGRIFSSFCIGK 453 >gi|33414589|ref|NP_115933.2| tRNA modification GTPase GTPBP3, mitochondrial precursor [Mus musculus] gi|81867616|sp|Q923K4|GTPB3_MOUSE RecName: Full=tRNA modification GTPase GTPBP3, mitochondrial; AltName: Full=GTP-binding protein 3; Flags: Precursor gi|60729690|pir||JC8039 mitochondrial GTP-binding protein GTPBP3 - mouse gi|14388168|gb|AAK60410.1| GTP binding protein 3 [Mus musculus] gi|33303614|gb|AAK35216.2| mitochondrial GTP-binding protein 1 [Mus musculus] gi|148668861|gb|EDL01029.1| GTP binding protein 3, isoform CRA_a [Mus musculus] gi|187951095|gb|AAI38561.1| GTP binding protein 3 [Mus musculus] Length = 492 Score = 288 bits (736), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 176/461 (38%), Positives = 254/461 (55%), Gaps = 30/461 (6%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-RKASLRYF-FGLDGRILDKG 64 TIFA+S+G AI++IR SGP+ + ++P P R+A LR G LD+ Sbjct: 35 TIFALSSGQGRCAIAVIRTSGPASGLALRSLTALQEPPPARRACLRLLRHPCSGEPLDRS 94 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 L++ FP P+SFTGED EFHVHGG AVV+G+L+ L +P LR A GEF+RRAF +GK+ Sbjct: 95 LVLWFPGPQSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFAHGKLS 154 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L E E LADLI +ETE QRR ++ + GELS L W LT +++EA +DF E++++ Sbjct: 155 LTEVEGLADLIRAETEAQRRQALRQLDGELSQLCQGWAKTLTKALAYVEAYIDFGEDDNL 214 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + ++ ++ L+ + SH+ + G+ + +G +V+ G NAGKSSL N L++K V Sbjct: 215 EEGVLEQADREVRALEVALGSHLRDARRGQRLLSGANVVVTGPPNAGKSSLVNLLSQKPV 274 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL- 303 +IV+ PGTTRDVL +DL G+ V +SDTAG+RE VE+EG++R +E AD+IL Sbjct: 275 SIVSPEPGTTRDVLETPVDLAGFPVLLSDTAGLREGVGAVEQEGVRRARHRLEQADIILG 334 Query: 304 --LLKEINSKKEISFPKNIDFIFIGTKSD--------------LYSTYTEEYD-----H- 341 ++ S SF + + D L S D H Sbjct: 335 VLDASDLASSSSCSFLDTVVTPLLAQSQDSGGQRLLLLLNKSDLLSANAPACDIALPPHL 394 Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFSIP--SHKRHLYHLSQTVRYLEMASLNEKD 399 L+S TG G++ L+ +K+ L+ P + RH YHL + L L Sbjct: 395 LLSCHTGAGMDSLLQALKTELAAVCGDPSTGPPLLTRVRHQYHLQGCLDALGHYQLATD- 453 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L + AE LR A L +TG E++LD+IF FC+GK Sbjct: 454 --LALAAEALRQARRQLNHLTGGGGTEEILDLIFQDFCVGK 492 >gi|205422256|sp|Q07UP2|MNME_RHOP5 RecName: Full=tRNA modification GTPase mnmE Length = 453 Score = 287 bits (734), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 169/460 (36%), Positives = 258/460 (56%), Gaps = 27/460 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+ +TIFA+S+G PSAI+I+R+SG ++ E + + P PR A DG Sbjct: 1 MHASDQTIFALSSGRPPSAIAIVRVSGSRGAKIVEALAGRL-PTPRMAMRALIKDRDGEP 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D +++ FP P S TGED AEFH+HGG AV+ ++ L+ N+R A PGEF+RRAFE+ Sbjct: 60 IDDAVVLWFPGPASATGEDVAEFHIHGGRAVLAALMATLSSFENVRAAEPGEFTRRAFEH 119 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GKIDL EAE L DLI ++T+ QRR ++ ++G L W ++ ++ IEA +DF++ Sbjct: 120 GKIDLTEAEGLDDLIHADTDRQRRQALRQLNGLLGDRARDWRAQIIEAQALIEAGIDFAD 179 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E DV + L I L +I + ++ E +R+G + I+G N GKS+L N LA Sbjct: 180 EGDVPDDLLAPALAKIEALAGEIEALLAAQGRSERLRDGLVVAIVGPPNVGKSTLMNQLA 239 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 +++VAIV+ GTTRDV+ + LDL+GY V + DTAGIR++DD VE+EG++R AD Sbjct: 240 RREVAIVSPHAGTTRDVIEVHLDLDGYPVTVIDTAGIRDSDDPVEQEGVRRAQARAAEAD 299 Query: 301 LILLLKEINSKKEISFPKNID----FIFIGTKSDLYSTYT----------------EEYD 340 L+L L + +++ P I+ + K DL T + Sbjct: 300 LVLWLL---ADDQVAAPAAIESDAPVWLVRNKVDLAGAATGVKPAKNLEANLGQNVPQPS 356 Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC 400 IS+ G+G+ +L+ + + F + +RH L + L+ + + Sbjct: 357 FAISAKRGDGIADLVGALGGFAAEFFGAGEAGAITRQRHRDLLRDALVMLQCSKRGRAE- 415 Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE+LR AS SLG++ G VDVE +LD +F FCIGK Sbjct: 416 --ELVAEDLRSASRSLGRLLGQVDVEDVLDALFRDFCIGK 453 >gi|58039527|ref|YP_191491.1| tRNA modification GTPase TrmE [Gluconobacter oxydans 621H] gi|81819099|sp|Q5FS11|MNME_GLUOX RecName: Full=tRNA modification GTPase mnmE gi|58001941|gb|AAW60835.1| tRNA modification GTPase [Gluconobacter oxydans 621H] Length = 437 Score = 287 bits (734), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 170/444 (38%), Positives = 260/444 (58%), Gaps = 22/444 (4%) Query: 2 NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRIL 61 ++ + IFA++TG +AI+I+R SGP + + +C + P PR+ SLR +G +L Sbjct: 11 DNTPQVIFALATGPSRAAIAIMRASGPGSDAILKALCNGRLPAPRRVSLRTLRH-NGEVL 69 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121 D + + P P S+TGED E H+H G A++ I + L + R A PGEF+RRA + G Sbjct: 70 DHAVALWLPGPNSYTGEDGFELHLHAGPAIIARIADALTDL-GARPAEPGEFTRRAVQKG 128 Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181 ++DLL+AE++ADL+ +ETE QR+ ++ G LS LY W +L + + EA +DF +E Sbjct: 129 RLDLLQAEAIADLVDAETESQRKQALRQADGALSRLYDDWAQRLRLVLAHQEALIDFPDE 188 Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 E Q+ ++ ++ L+ ++S+H+ Q GE++R G +VI G N GKSSL NAL+ Sbjct: 189 ELPQDVEDG-LIEELSKLQTEMSAHL-QDNRGELMRQGLTVVIAGSPNVGKSSLLNALSG 246 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 D AIVT GTTRD + +D L+G +++ DTAG+RET+D +E EGI+R V+ AD+ Sbjct: 247 TDAAIVTHRAGTTRDAIALDWVLDGVRLRLIDTAGLRETEDEIEAEGIRRALFHVKQADV 306 Query: 302 IL-LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKS 360 +L L+ S +S + I I TK D+ IS+ +GEGL L + Sbjct: 307 VLHLIGPDESLDTLSGQE----IPIRTKIDIAPAPPGMLG--ISTQSGEGLAAL----RQ 356 Query: 361 ILSNKFKKL---PFSIP-SHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSL 416 ILS + +L + P + RH + + V +L+ A ++ E LRL+ ++L Sbjct: 357 ILSERVAELMAGSAAPPLTRARHRAGIQEAVTHLDHA---RTATWPELRGEELRLSMLAL 413 Query: 417 GKITGCVDVEQLLDIIFSKFCIGK 440 G++TG VDVE LLD IF +FCIGK Sbjct: 414 GRLTGRVDVESLLDAIFGQFCIGK 437 >gi|193078405|gb|ABO13382.2| tRNA modification GTPase [Acinetobacter baumannii ATCC 17978] Length = 451 Score = 287 bits (734), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 173/455 (38%), Positives = 264/455 (58%), Gaps = 22/455 (4%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62 H + TI A++T + +IRLSGP + + + + +K P R A R F+ DG I+D Sbjct: 2 HSQTTIAAIATPPGRGGVGVIRLSGPKAYDIAQKLTQKNLPEARMAGFRKFYDADGSIMD 61 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 +G+++ FP+P SFTGED E HGG + N +L L ++ + A GEFS RAFENGK Sbjct: 62 EGIVLCFPNPHSFTGEDVVELQGHGGPVIQNALLGRLFELGAI-AAKAGEFSMRAFENGK 120 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 +DL++AE++ADLI + ++ R ++ + G S+ ++KL ++R +EA +DF EEE Sbjct: 121 MDLVQAEAIADLIDATSQAAARSAVRSLQGAFSTKINTVLEKLIYLRLHVEAAIDFPEEE 180 Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 + + ++L + ++ + + + + G+++R G ++VI G NAGKSSL NALA Sbjct: 181 -IDFLADGKILALLEDVQQSVHAVQTSARQGQLLREGLQVVIAGKPNAGKSSLLNALAGV 239 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 + AIVTDI GTTRDVL + L G + ++DTAG+RET DIVEKEGI+R E+E ADL+ Sbjct: 240 ERAIVTDIAGTTRDVLHEKISLNGLPITLTDTAGLRETGDIVEKEGIRRAIKEIEQADLL 299 Query: 303 LLLKEINSK------KEISFPKNID---FIFIGTKSDLYSTYTEEYD-----HLISSFTG 348 LL+ ++N + F ++I+ + IG K DL E D H+ S Sbjct: 300 LLVYDLNQGDDPLKLAQEYFSEHIEPRRLMLIGNKCDLTGQSAEISDYQGFRHITVSAKQ 359 Query: 349 E-GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDII 405 E G++ L++ I + F + + RHL + +T YL A L + G +++ Sbjct: 360 EMGVQGLVDAITA--HAGFHPEEDTFIARTRHLDAMKRTQLYLAEAREQLVVFNAG-ELV 416 Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 AE+LRLA +LG+ITG + LL IF FCIGK Sbjct: 417 AESLRLAQNALGEITGDFSADDLLGKIFGSFCIGK 451 >gi|163745111|ref|ZP_02152471.1| tRNA modification GTPase TrmE [Oceanibulbus indolifex HEL-45] gi|161381929|gb|EDQ06338.1| tRNA modification GTPase TrmE [Oceanibulbus indolifex HEL-45] Length = 428 Score = 286 bits (733), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 165/438 (37%), Positives = 260/438 (59%), Gaps = 14/438 (3%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TIFA ++ + +++IR+SGP F + I K+ P R + LR G ++D+ L Sbjct: 2 DTIFAQASAPGRAGVAVIRISGPQAFAIAHKISGKQ-PEGRTSVLRNLQNAAGEVIDQAL 60 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 ++ FP P SFTGED EF +HG IAVV +L L++ P+ R+A GEF+RRA EN K+DL Sbjct: 61 VLSFPGPNSFTGEDVIEFQLHGSIAVVRAMLATLSEFPDTRIAEAGEFTRRALENEKLDL 120 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 + E LADLI +ETE QR+ ++ +SG L + W L + +EA +DF++EE Sbjct: 121 AQVEGLADLIEAETEAQRKQAVRVLSGHLGARVEDWRKDLIRAAALLEATIDFADEEVPI 180 Query: 186 NFSSKEVLNDILF-LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + + + +ND+L + ++ + I + E +R+G+++ I+G NAGKS+L NALA +D Sbjct: 181 DVTPE--VNDLLTKVGAELKAEIRGTHVAERVRSGFEVAIIGPPNAGKSTLLNALAGRDA 238 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AI +++ GTTRDV+ + +DL G V + DTAG+R+++D +E GI+R + ADL + Sbjct: 239 AITSELAGTTRDVIEVRMDLGGLPVTLLDTAGLRDSEDQIEAIGIERAIERSKLADLRVF 298 Query: 305 LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364 L +S P+ D + + K+DL S + ++ +S TG+G+ +LI +I++ LS Sbjct: 299 LAAPGESLMVS-PEAEDIVLV-PKADLVS----DSENGVSGKTGQGVSDLIARIQTTLSK 352 Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSLGKITGC 422 + + + +H+RH L Q V L A L D+ AE LR A +L + G Sbjct: 353 RSSGV--GLATHERHRVALEQAVSCLAEVDAILTRGPDFYDLAAEELRFAIRALESLVGR 410 Query: 423 VDVEQLLDIIFSKFCIGK 440 +DVE LLD IF+ FC+GK Sbjct: 411 IDVENLLDEIFTSFCVGK 428 >gi|115522411|ref|YP_779322.1| tRNA modification GTPase TrmE [Rhodopseudomonas palustris BisA53] gi|115516358|gb|ABJ04342.1| tRNA modification GTPase trmE [Rhodopseudomonas palustris BisA53] Length = 482 Score = 286 bits (733), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 169/460 (36%), Positives = 258/460 (56%), Gaps = 27/460 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+ +TIFA+S+G PSAI+I+R+SG ++ E + + P PR A DG Sbjct: 30 MHASDQTIFALSSGRPPSAIAIVRVSGSRGAKIVEALAGRL-PTPRMAMRALIKDRDGEP 88 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D +++ FP P S TGED AEFH+HGG AV+ ++ L+ N+R A PGEF+RRAFE+ Sbjct: 89 IDDAVVLWFPGPASATGEDVAEFHIHGGRAVLAALMATLSSFENVRAAEPGEFTRRAFEH 148 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GKIDL EAE L DLI ++T+ QRR ++ ++G L W ++ ++ IEA +DF++ Sbjct: 149 GKIDLTEAEGLDDLIHADTDRQRRQALRQLNGLLGDRARDWRAQIIEAQALIEAGIDFAD 208 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E DV + L I L +I + ++ E +R+G + I+G N GKS+L N LA Sbjct: 209 EGDVPDDLLAPALAKIEALAGEIEALLAAQGRSERLRDGLVVAIVGPPNVGKSTLMNQLA 268 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 +++VAIV+ GTTRDV+ + LDL+GY V + DTAGIR++DD VE+EG++R AD Sbjct: 269 RREVAIVSPHAGTTRDVIEVHLDLDGYPVTVIDTAGIRDSDDPVEQEGVRRAQARAAEAD 328 Query: 301 LILLLKEINSKKEISFPKNID----FIFIGTKSDLYSTYT----------------EEYD 340 L+L L + +++ P I+ + K DL T + Sbjct: 329 LVLWLL---ADDQVAAPAAIESDAPVWLVRNKVDLAGAATGVKPAKNLEANLGQNVPQPS 385 Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC 400 IS+ G+G+ +L+ + + F + +RH L + L+ + + Sbjct: 386 FAISAKRGDGIADLVGALGGFAAEFFGAGEAGAITRQRHRDLLRDALVMLQCSKRGRAE- 444 Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE+LR AS SLG++ G VDVE +LD +F FCIGK Sbjct: 445 --ELVAEDLRSASRSLGRLLGQVDVEDVLDALFRDFCIGK 482 >gi|205829074|sp|A3M8Y8|MNME_ACIBT RecName: Full=tRNA modification GTPase mnmE Length = 454 Score = 286 bits (733), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 173/455 (38%), Positives = 264/455 (58%), Gaps = 22/455 (4%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62 H + TI A++T + +IRLSGP + + + + +K P R A R F+ DG I+D Sbjct: 5 HSQTTIAAIATPPGRGGVGVIRLSGPKAYDIAQKLTQKNLPEARMAGFRKFYDADGSIMD 64 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 +G+++ FP+P SFTGED E HGG + N +L L ++ + A GEFS RAFENGK Sbjct: 65 EGIVLCFPNPHSFTGEDVVELQGHGGPVIQNALLGRLFELGAI-AAKAGEFSMRAFENGK 123 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 +DL++AE++ADLI + ++ R ++ + G S+ ++KL ++R +EA +DF EEE Sbjct: 124 MDLVQAEAIADLIDATSQAAARSAVRSLQGAFSTKINTVLEKLIYLRLHVEAAIDFPEEE 183 Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 + + ++L + ++ + + + + G+++R G ++VI G NAGKSSL NALA Sbjct: 184 -IDFLADGKILALLEDVQQSVHAVQTSARQGQLLREGLQVVIAGKPNAGKSSLLNALAGV 242 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 + AIVTDI GTTRDVL + L G + ++DTAG+RET DIVEKEGI+R E+E ADL+ Sbjct: 243 ERAIVTDIAGTTRDVLHEKISLNGLPITLTDTAGLRETGDIVEKEGIRRAIKEIEQADLL 302 Query: 303 LLLKEINSK------KEISFPKNID---FIFIGTKSDLYSTYTEEYD-----HLISSFTG 348 LL+ ++N + F ++I+ + IG K DL E D H+ S Sbjct: 303 LLVYDLNQGDDPLKLAQEYFSEHIEPRRLMLIGNKCDLTGQSAEISDYQGFRHITVSAKQ 362 Query: 349 E-GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDII 405 E G++ L++ I + F + + RHL + +T YL A L + G +++ Sbjct: 363 EMGVQGLVDAITA--HAGFHPEEDTFIARTRHLDAMKRTQLYLAEAREQLVVFNAG-ELV 419 Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 AE+LRLA +LG+ITG + LL IF FCIGK Sbjct: 420 AESLRLAQNALGEITGDFSADDLLGKIFGSFCIGK 454 >gi|58584293|ref|YP_197866.1| tRNA modification GTPase TrmE [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|81311677|sp|Q5GTQ0|MNME_WOLTR RecName: Full=tRNA modification GTPase mnmE gi|58418609|gb|AAW70624.1| Predicted GTPase [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 442 Score = 286 bits (732), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 171/451 (37%), Positives = 268/451 (59%), Gaps = 20/451 (4%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M + ETIFA+ST S +++IR+SG + K PR A+L + ++ Sbjct: 1 MMNTDETIFALSTVFGKSGVAVIRISGNHALKALNHFHVNKDMKPRFATLVDLYDSSDQL 60 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D G+ I FP+P SFTGED E VHGG AV+ +LEEL+++ +A PGEF RAF N Sbjct: 61 IDNGIAIYFPAPNSFTGEDVIELQVHGGKAVIKIVLEELSRI--FVMAKPGEFLLRAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GK DL + E +ADLI +ET+MQ + +++ MSGEL LY W +L ++S IEA +DF E Sbjct: 119 GKFDLTQIEGIADLIDAETKMQAKQAIKQMSGELEKLYSSWRQRLIAVQSKIEAYIDFPE 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 + + +++ +++ L I H++ + GE +R G IVI G N GKS+LFN LA Sbjct: 179 DVATEKNELEKINDEVQTLVQSIQEHLNDNRRGERLREGLHIVITGEPNVGKSTLFNFLA 238 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++D+AIV++ GTTRD+L +D+ GY + +SDTAGIRE+ D VE EGI R AD Sbjct: 239 RRDIAIVSEYVGTTRDILEAHIDIGGYPIILSDTAGIRESSDPVESEGISRAKKRSCEAD 298 Query: 301 LILLLKEINSKKEISFPKNI---DFIFIGTKSD----LYSTYTEEYDHL-ISSFTGEGLE 352 L + L + I+ N+ + I++ +K+D + + D L +S G G E Sbjct: 299 LRIELFPFEQRYNINC--NVISSNTIYVLSKADDVINDHDIKISDIDFLPVSILKGIGTE 356 Query: 353 ELINKIKSILSNKF---KKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENL 409 +L++ IK + KF + +P + + +RH + + + +L ++N +++++E+L Sbjct: 357 KLVSVIKEKVEEKFVYDRDVP--VITRQRHRNCMQKAIEHLRRFNMNNP---IELVSEDL 411 Query: 410 RLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 RLA+ LG +TG ++VE++LD IF+ FC+GK Sbjct: 412 RLAASELGVVTGIINVEEVLDDIFNNFCVGK 442 >gi|299772120|ref|YP_003734146.1| tRNA modification GTPase TrmE [Acinetobacter sp. DR1] gi|298702208|gb|ADI92773.1| tRNA modification GTPase TrmE [Acinetobacter sp. DR1] Length = 451 Score = 286 bits (731), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 173/455 (38%), Positives = 263/455 (57%), Gaps = 22/455 (4%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62 + TI A++T + +IRLSGP +++ + + +K P R A R F+ DG I+D Sbjct: 2 QSQTTIAAIATPPGRGGVGVIRLSGPKAYEIAQNLTQKNLPEARMAGFRKFYDADGSIMD 61 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 +G+++ FP+P SFTGED E HGG + N +L L ++ + A GEFS RAFENGK Sbjct: 62 EGIVLCFPNPYSFTGEDVVELQGHGGPVIQNALLGRLFELGAI-AAKAGEFSMRAFENGK 120 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 +DL++AE++ADLI + ++ R ++ + G S+ ++KL H+R +EA +DF EEE Sbjct: 121 MDLVQAEAIADLIDATSQAAARSAVRSLQGAFSTKINTVLEKLIHLRLHVEAAIDFPEEE 180 Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 + + ++L + ++ + + + + G+++R G ++VI G NAGKSSL NALA Sbjct: 181 -IDFLADGKILALLEDVQQSVHAVQTSARQGQLLREGLQVVIAGKPNAGKSSLLNALAGV 239 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 + AIVTDI GTTRDVL + L G + ++DTAG+RET DIVEKEGI+R E+E ADL+ Sbjct: 240 ERAIVTDIAGTTRDVLHEKISLNGLPITLTDTAGLRETGDIVEKEGIRRAIKEIEQADLL 299 Query: 303 LLLKEINSK------KEISFPKNID---FIFIGTKSDLYSTYTEEYD-----HLISSFTG 348 LL+ ++N + F ++I+ + IG K DL E D H+ S Sbjct: 300 LLVYDLNQGDDPLKLAQEYFAEHIEPRRLMLIGNKCDLTGQLAEINDFQGFRHITVSAKQ 359 Query: 349 E-GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDII 405 E G++ L+ I + F + + RHL + +T YL A L + G +++ Sbjct: 360 EMGVQGLVEAITA--HAGFHPEEDTFIARTRHLDAMKRTQLYLSEAREQLVVFNAG-ELV 416 Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 AE+LRLA +LG+ITG + LL IF FCIGK Sbjct: 417 AESLRLAQNALGEITGDFSADDLLGKIFGSFCIGK 451 >gi|293611390|ref|ZP_06693686.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292826262|gb|EFF84631.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 454 Score = 286 bits (731), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 172/455 (37%), Positives = 263/455 (57%), Gaps = 22/455 (4%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62 + TI A++T + +IRLSGP +++ + + +K P R A R F+ D I+D Sbjct: 5 QSQTTIAAIATPPGRGGVGVIRLSGPKAYEIAQNLTQKNLPEARMAGFRKFYDADASIMD 64 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 +G+++ FP+P SFTGED E HGG + N +L L ++ + A GEFS RAFENGK Sbjct: 65 EGIVLCFPNPHSFTGEDVVELQGHGGPVIQNALLGRLFELGAI-AAKAGEFSMRAFENGK 123 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 +DL++AE++ADLI + ++ R ++ + G S+ ++KL H+R +EA +DF EEE Sbjct: 124 MDLVQAEAIADLIDATSQAAARSAVRSLQGAFSTKINTVLEKLIHLRLHVEAAIDFPEEE 183 Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 + + ++L + ++ + + + + G+++R G ++VI G NAGKSSL NALA Sbjct: 184 -IDFLADGKILALLEDVQQSVHAVQTSARQGQLLREGLQVVIAGKPNAGKSSLLNALAGV 242 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 + AIVTDI GTTRDVL + L G + ++DTAG+RET DIVEKEGI+R E+E ADL+ Sbjct: 243 ERAIVTDIAGTTRDVLHEKISLNGLPITLTDTAGLRETGDIVEKEGIRRAIKEIEQADLL 302 Query: 303 LLLKEINSK------KEISFPKNID---FIFIGTKSDLYSTYTEEYD-----HLISSFTG 348 LL+ ++N + F ++I+ + IG K DL E D H+ S Sbjct: 303 LLVYDLNQGDDPLKLAQEYFAEHIEPRRLMLIGNKCDLTGQLAEISDFQGFRHITVSAKQ 362 Query: 349 E-GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDII 405 E G++ L++ I + F + + RHL + +T YL A L + G +++ Sbjct: 363 EMGVQGLVDAITA--HAGFHPEEDTFIARTRHLDAMKRTQLYLSEAREQLVVFNAG-ELV 419 Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 AE+LRLA +LG+ITG + LL IF FCIGK Sbjct: 420 AESLRLAQNALGEITGDFSADDLLGKIFGSFCIGK 454 >gi|329113883|ref|ZP_08242654.1| tRNA modification GTPase MnmE [Acetobacter pomorum DM001] gi|326696893|gb|EGE48563.1| tRNA modification GTPase MnmE [Acetobacter pomorum DM001] Length = 443 Score = 286 bits (731), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 173/449 (38%), Positives = 255/449 (56%), Gaps = 27/449 (6%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFF---GLDGRIL 61 ++TIFA+STG +AI+++R+SG + +C K P RKA LR + +L Sbjct: 9 EDTIFALSTGIERAAIAVLRVSGAGSRNILLQLCGKV-PEARKAVLRKIWKNASAQDDLL 67 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121 D+ L++ FP P+S+TGED E H+H G A++ + + L ++ R A PGEF+RRAF NG Sbjct: 68 DEALVLWFPGPQSYTGEDGFELHLHAGPAIIRAVSDALVQL-GARPAEPGEFTRRAFVNG 126 Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181 ++DL+EAE +ADL+++ET+ QR+L++ G LS LY W ++L + +F EA +DF +E Sbjct: 127 RMDLVEAEGIADLVAAETDGQRKLALAQADGALSHLYSGWSERLKKVLAFQEALIDFPDE 186 Query: 182 ---EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 +V+ ++E+ L+ ++ HI+ G+ GE IR G I G NAGKSSL N Sbjct: 187 GLPPEVEEGINQEIQK----LQFEMQQHIADGEHGERIRQGVVFAITGPPNAGKSSLLNW 242 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L +D AIV+ GTTRD L + L G V DTAG+RETDD +E EG++R V+ Sbjct: 243 LTGRDTAIVSSKAGTTRDALEVACILAGIKVTFVDTAGLRETDDEIEAEGVRRALFHVKQ 302 Query: 299 ADLILLLKEINSKKEISFPKNIDFIFIGTKSD---LYSTYTEEYDHLISSFTGEGLEELI 355 AD +L + N + FP D + IG K+D + + IS TGEGL EL Sbjct: 303 ADCVLQMFPANEPPDDVFP---DAVLIGNKADIGEIPKVIQGKNVRAISLKTGEGLPELY 359 Query: 356 N----KIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411 K++ + + P + RH + + V+ L A + ++ E LRL Sbjct: 360 TFLQRKVEELTAASISGAPLL--TRARHKAGVQEAVQCLHAALQQDWP---ELRGEELRL 414 Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A +LG++TG V VE LLD IF +FCIGK Sbjct: 415 AMRALGRLTGHVGVEDLLDTIFGQFCIGK 443 >gi|260553777|ref|ZP_05826047.1| tRNA modification GTPase mnmE [Acinetobacter sp. RUH2624] gi|260405081|gb|EEW98581.1| tRNA modification GTPase mnmE [Acinetobacter sp. RUH2624] Length = 454 Score = 285 bits (730), Expect = 7e-75, Method: Compositional matrix adjust. Identities = 172/455 (37%), Positives = 263/455 (57%), Gaps = 22/455 (4%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62 + TI A++T + +IRLSGP + + + + +K P R A R F+ DG I+D Sbjct: 5 QSQTTIAAIATPPGRGGVGVIRLSGPKAYDMAQKLTQKNLPEARMAGFRKFYDADGSIMD 64 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 +G+++ FP+P SFTGED E HGG + N +L L ++ + A GEFS RAFENGK Sbjct: 65 EGIVLCFPNPHSFTGEDVVELQGHGGPVIQNALLGRLFELGAI-AAKAGEFSMRAFENGK 123 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 +DL++AE++ADLI + ++ R ++ + G S+ ++KL H+R +EA +DF EEE Sbjct: 124 MDLVQAEAIADLIDATSQAAARSAVRSLQGAFSTKINTVLEKLIHLRLHVEAAIDFPEEE 183 Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 + + ++L + ++ + + + + G+++R G ++VI G NAGKSSL NALA Sbjct: 184 -IDFLADGKILALLEDVQQSVHAVQTSARQGQLLREGLQVVIAGKPNAGKSSLLNALAGV 242 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 + AIVTDI GTTRDVL + L G + ++DTAG+RET D+VEKEGI+R E+E ADL+ Sbjct: 243 ERAIVTDIAGTTRDVLHEKISLNGLPITLTDTAGLRETGDVVEKEGIRRAIKEIEQADLL 302 Query: 303 LLLKEINSK------KEISFPKNID---FIFIGTKSDLYSTYTEEYD-----HLISSFTG 348 LL+ ++N + F ++I+ + IG K DL E D H+ S Sbjct: 303 LLVYDLNQGDDPLQLAQEYFAEHIEPRRLMLIGNKCDLTGQSAEIGDYQGFRHITVSAKQ 362 Query: 349 E-GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDII 405 E G++ L++ I + F + + RHL + +T YL A L + G +++ Sbjct: 363 EMGVQGLVDAITA--HAGFHPEEDTFIARTRHLDAMKRTQLYLAEAREQLVVFNAG-ELV 419 Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 AE+LRLA +LG+ITG + LL IF FCIGK Sbjct: 420 AESLRLAQNALGEITGDFSADDLLGKIFGSFCIGK 454 >gi|90421815|ref|YP_530185.1| tRNA modification GTPase TrmE [Rhodopseudomonas palustris BisB18] gi|122477629|sp|Q21CM0|MNME_RHOPB RecName: Full=tRNA modification GTPase mnmE gi|90103829|gb|ABD85866.1| tRNA modification GTPase trmE [Rhodopseudomonas palustris BisB18] Length = 449 Score = 285 bits (730), Expect = 8e-75, Method: Compositional matrix adjust. Identities = 173/455 (38%), Positives = 257/455 (56%), Gaps = 21/455 (4%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+ ++TIFA+S+G P+A++I+R+SGP V E I + P PR+A + Sbjct: 1 MHSRQQTIFALSSGRPPAALAIVRVSGPEAAIVLERIAGRLPP-PRQAMRALLHDASAQP 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D +++ FP+P S TGED AEFH+HGG AV++ ++ + NLR A PGEF+RRAFEN Sbjct: 60 IDDAIVLWFPAPRSATGEDVAEFHIHGGRAVLSAVIAAIGTNENLRAAEPGEFTRRAFEN 119 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GK+DL EAE L DLI ++TE QRR ++ + G L W ++ + +EA +DF++ Sbjct: 120 GKLDLTEAEGLDDLIHADTERQRRQALRQLQGLLGDRARDWRGEIIAASALVEAAIDFAD 179 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E DV + I L ++I ++Q E +R+G + I G N GKS+L N LA Sbjct: 180 EGDVPDELIAPAKAKIEILLDEIEDVLAQEGRSEKLRDGLVVAITGPPNVGKSTLMNQLA 239 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 +++VAIV+ GTTRD++ + LDL+GY V + DTAGIRE D VE+EG++R AD Sbjct: 240 RREVAIVSPHAGTTRDIIEVHLDLDGYPVTVIDTAGIREAIDPVEQEGVRRARSRAAEAD 299 Query: 301 LILLLKEINS--------KKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------ISSF 346 L L L + + + ++ +N F + K D+ T E IS+ Sbjct: 300 LRLWLVDAQAAGDGEDALRAWMAQGQN-GFWVVRNKVDVAGEPTGELSATGWPCFSISAA 358 Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDII 405 G G+ ELI + + I + RH L QT L A L E+ +++I Sbjct: 359 NGRGVAELIAALGKFAAAHLGGESALI-TRARHRDLLRQTADALGRAIDLPEQ---VELI 414 Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 AE LR+A+ LG++ G VDVE +LD+IF +FC+GK Sbjct: 415 AEELRIAAHRLGQLLGRVDVEDILDVIFREFCVGK 449 >gi|296114339|ref|ZP_06832993.1| tRNA modification GTPase TrmE [Gluconacetobacter hansenii ATCC 23769] gi|295979100|gb|EFG85824.1| tRNA modification GTPase TrmE [Gluconacetobacter hansenii ATCC 23769] Length = 431 Score = 285 bits (730), Expect = 9e-75, Method: Compositional matrix adjust. Identities = 165/442 (37%), Positives = 251/442 (56%), Gaps = 24/442 (5%) Query: 8 IFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD-----GRILD 62 IFA++TGA +AI+++R+SG C + +C P PR+ASLR + D G +LD Sbjct: 5 IFALATGAGRAAIAVMRISGAGCDAILRSLCGGL-PEPRRASLRGIWRRDADAGPGVLLD 63 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 + +++ FP P S+TGEDSAE H+H G AV+ G+ + L + R A PGEF+RRAF G+ Sbjct: 64 RAVVLWFPGPNSYTGEDSAELHLHAGPAVIAGVADALVAL-GARPAEPGEFTRRAFAGGR 122 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 +DL++AE +ADLI +ETE QRR ++ G S LY W +L + EA +DF +E Sbjct: 123 LDLVQAEGIADLIDAETEAQRRQALAQADGAQSRLYEDWAARLRTALAHQEALIDFPDE- 181 Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 D+ +L + L++++ +++ G GE +R G I+G N GKSSL N LA++ Sbjct: 182 DLPPEVEDALLGTLAQLRDEMQAYLDDGSQGERLRRGLVFTIVGEPNVGKSSLLNTLAQR 241 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 D AIV+ GTTRD + + + L V + DTAG+RETDD +E EG++R V+ AD + Sbjct: 242 DAAIVSSRAGTTRDAIEVRIVLGDVPVIVVDTAGLRETDDEIEAEGVRRALFHVKQADCV 301 Query: 303 LLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362 + + S + D I + + D + IS TGEG+E L + +L Sbjct: 302 I---HVFSGAAVPDKVGPDSIMVCNRIDEVAAPPGIMG--ISVRTGEGMEAL----RDVL 352 Query: 363 SNKFKKLP---FSIP-SHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGK 418 + + + L + P + RH + +T +L A+ D ++ E +RLA +LG+ Sbjct: 353 AQRARDLTQGRAAAPLTRARHRAAIEETAHHLNRAA---DDAWPEVRGEEMRLAMRALGR 409 Query: 419 ITGCVDVEQLLDIIFSKFCIGK 440 +TG V VE LLD +F +FCIGK Sbjct: 410 LTGAVGVEALLDTVFGQFCIGK 431 >gi|329664338|ref|NP_001193147.1| tRNA modification GTPase GTPBP3, mitochondrial [Bos taurus] gi|297476305|ref|XP_002688588.1| PREDICTED: GTP binding protein 3 (mitochondrial) [Bos taurus] gi|296486093|gb|DAA28206.1| GTP binding protein 3 (mitochondrial) [Bos taurus] Length = 521 Score = 285 bits (729), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 180/494 (36%), Positives = 264/494 (53%), Gaps = 67/494 (13%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFF-GLDGRILDKG 64 TIFA+S+G I++IR SGP+ + + + P RKA LR G LD+ Sbjct: 35 TIFALSSGQGRCGIAVIRTSGPASGHALQSLTAPRDLPLARKACLRLLSDPRSGEPLDRA 94 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 L++ FP P+SFTGED AEFHVHGG AVV+G+L+ L +P LR A GEF+RRAF +GK+ Sbjct: 95 LVLWFPGPQSFTGEDCAEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFAHGKLS 154 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L E E LADLI +ETE QRR ++ + GEL L W + LT + +EA +DFSE++++ Sbjct: 155 LTEVEGLADLIHAETEAQRRQALRQLDGELGDLCRGWAETLTKALAHVEAYIDFSEDDNL 214 Query: 185 Q------------------------------NFSSKEVLNDILFLKNDISSHISQGKLGE 214 + +F +++ L+ + H+ + G+ Sbjct: 215 EEGVLDQGGSPWGWEAETSGIQPPQVLLLSLSFPPSTADSEVRKLEVALGVHLRDARRGQ 274 Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274 +R+G +V+ G NAGKSSL N L++K V+IV+ PGTTRDVL +DL G+ +SDT Sbjct: 275 RLRSGAHVVVAGPPNAGKSSLVNLLSRKPVSIVSPEPGTTRDVLETPVDLAGFPALLSDT 334 Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF------------ 322 AG+RE VE+EG++R +E ADLIL + + + +++ P + +F Sbjct: 335 AGLREGVGPVEQEGVRRAQKRLEQADLILAVLDAS---DLASPASCNFLDTVVIPAGARN 391 Query: 323 --------IFIGTKSDLYST-----YTEEYDH-LISSFTGEGLEELINKIKSILSNKFKK 368 + + KSDL + + H L+S TGEGL+ L+ +K L+ Sbjct: 392 PNGSRQRLLLVLNKSDLLPAGRSDLHPDLPSHLLLSCLTGEGLDGLLEALKKELAALCGD 451 Query: 369 LPFSIP--SHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVE 426 P + P + RH +HL + L KD L + AE LR+A L +TG E Sbjct: 452 -PSTGPLLTRSRHQHHLRGCLDALGQYK-QAKD--LALAAEALRVARGHLSHLTGGGGTE 507 Query: 427 QLLDIIFSKFCIGK 440 ++LDIIF FC+GK Sbjct: 508 EILDIIFRDFCVGK 521 >gi|262377654|ref|ZP_06070874.1| tRNA modification GTPase TrmE [Acinetobacter lwoffii SH145] gi|262307413|gb|EEY88556.1| tRNA modification GTPase TrmE [Acinetobacter lwoffii SH145] Length = 452 Score = 285 bits (729), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 176/461 (38%), Positives = 266/461 (57%), Gaps = 30/461 (6%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M + TI A++T + +IRLSGP +++ + + +K+ P R A R F+ G + Sbjct: 1 MLNRTTTIAAIATPPGRGGVGVIRLSGPKSYEIAQQLTQKELPKARFAGFRQFYDAAGEV 60 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+GL I FP+P SFTGED E HGG + N +L L ++ A GEFS RAFEN Sbjct: 61 MDEGLAICFPNPNSFTGEDVVELQGHGGPVIQNALLGRLLEL-GATAAKAGEFSMRAFEN 119 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GK+DL++AE++ADLI + ++ R ++ + G S+ +++L H+R +EA +DF E Sbjct: 120 GKLDLVQAEAIADLIDATSQAAARSAVRSLQGAFSTKVNAVLEQLIHLRLHVEAAIDFPE 179 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQ----GKLGEIIRNGYKIVILGHSNAGKSSLF 236 EE + + ++LN L + +SS ++Q + G+++R G ++VI G NAGKSSL Sbjct: 180 EE-IDFLADGKILN----LLDGVSSAVTQVQQSARQGQLLREGLQVVIAGKPNAGKSSLL 234 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 NALA + AIVTDI GTTRDVL + L G + ++DTAG+RET DIVEKEGI+R E+ Sbjct: 235 NALAGIERAIVTDIAGTTRDVLHEKITLNGLPITLTDTAGLRETGDIVEKEGIRRAIKEI 294 Query: 297 ENADLILLLKEINSKKEI------SFPKNID---FIFIGTKSDLYSTYT-----EEYDHL 342 E ADL+LL+ +++ ++ F ++I+ + IG K DL + H+ Sbjct: 295 EQADLLLLVYDLSQGEDPLQLAQEYFAEHIEPKRLMLIGNKCDLTGAEAVIGDLNGFRHI 354 Query: 343 ISSFTGE-GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKD 399 S E G++ LI I + F+ + + RHL + +T YL A L + Sbjct: 355 AVSAKQETGVQALIEAITA--HAGFQPEEDTFIARTRHLDAMKRTQLYLAEACEQLVVYN 412 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G +++AE+LRLA +LG+ITG + LL IF FCIGK Sbjct: 413 AG-ELVAESLRLAQNALGEITGDFSADDLLGKIFGSFCIGK 452 >gi|209966078|ref|YP_002298993.1| tRNA modification GTPase TrmE [Rhodospirillum centenum SW] gi|209959544|gb|ACJ00181.1| tRNA modification GTPase TrmE [Rhodospirillum centenum SW] Length = 439 Score = 285 bits (728), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 188/453 (41%), Positives = 265/453 (58%), Gaps = 35/453 (7%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFF-GLDGRILDKG 64 +TIFA +T + ++RLSGP + + P PR+A+L G + D+ Sbjct: 4 DTIFAPATAPGRGGVQVVRLSGPLAGPALVRLSGRLPP-PRQATLASLHDPAGGEVFDRA 62 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 LL+ FP+P SFTGED AE H+HGG AV+ E L + LR+A PGEFSRRAFE+GK+D Sbjct: 63 LLLWFPAPASFTGEDVAELHLHGGRAVLAAAAEALTAL-GLRVAEPGEFSRRAFEHGKLD 121 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L EAE++ADL+++ET QRR ++ M G L LY W +L + +EA++DF EE+ Sbjct: 122 LTEAEAIADLVAAETAAQRRQALRQMDGALGRLYEDWRHRLVRALAHLEAEIDFPEEDLP 181 Query: 185 QNF--SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 S + V+ D+L +I++H++ G GE +R+G I ILG NAGKSSL NA+A++ Sbjct: 182 GGLTDSVRPVVRDLL---AEIAAHLADGHRGERLRDGIAIAILGAPNAGKSSLLNAIARR 238 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 DVAIV+ GTTRDV+ + LDL GY V ++DTAG+RET D VE EGI+R ADL Sbjct: 239 DVAIVSAQAGTTRDVIEVALDLGGYPVTLADTAGLRETLDAVESEGIRRALDRAARADLT 298 Query: 303 LLLKEINSKKEISFPKNI-----DFIFIGTKSDLYSTYTEEYDH----LISSFTGEGLEE 353 LL+ + + P + D + + K+DL E +S+ TG+GL Sbjct: 299 LLVFDATLPPD---PATLALAGEDALVVLNKADLAGELPSEVAGRPALAVSAATGQGLAA 355 Query: 354 LINKIKSILSNKFKKLPFSIPS--HKRHLYHL----SQTVRYLEMASLNEKDCGLDIIAE 407 L+ + + + ++ P + PS RH L + R LE A L E + AE Sbjct: 356 LLATLTAAVEMRYA--PAAAPSLTRARHRAALEACGASLARALE-APLPE------LAAE 406 Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++RLA+ +LG+ITG VDVE LLD+IF FCIGK Sbjct: 407 DVRLAARALGRITGRVDVEDLLDVIFRDFCIGK 439 >gi|159045994|ref|YP_001534788.1| tRNA modification GTPase TrmE [Dinoroseobacter shibae DFL 12] gi|205829136|sp|A8LPC2|MNME_DINSH RecName: Full=tRNA modification GTPase mnmE gi|157913754|gb|ABV95187.1| tRNA modification GTPase TrmE [Dinoroseobacter shibae DFL 12] Length = 429 Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 163/436 (37%), Positives = 248/436 (56%), Gaps = 9/436 (2%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TIFA+++ S ++++R+SG F + P ++ SLR DG ++D+ L Sbjct: 2 DTIFALASAPGKSGVAVLRISGSRAFHAGRVLAGGL-PDAQRTSLRKLRDSDGSVIDEAL 60 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 ++ F SP SFTGED EF HG A++ ++ EL+ +P LRLA PGEF+RRA EN ++DL Sbjct: 61 VLAFESPNSFTGEDCVEFQTHGSPAIIAALMNELSALPGLRLAQPGEFTRRALENNRMDL 120 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 + E LADLI +ETE QR+ ++ SGEL W L + +E +DF++EE V Sbjct: 121 AQVEGLADLIEAETEAQRKQALRTFSGELGQKVELWRKDLVRAMALLEVTIDFADEE-VP 179 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 EV + + ++++ + E IR+G+++ ILG N GKSSL N LA ++ A Sbjct: 180 EDVYPEVQELLGRVSQNLAAESAGTHAAERIRHGFEVAILGAPNVGKSSLLNRLAGREAA 239 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 I + I GTTRDV+ + LDL+G V + DTAG+RET D +E+ GI R E+ADL ++L Sbjct: 240 ITSSIAGTTRDVVEVRLDLDGLPVTVLDTAGLRETQDEIEQIGISRAMARAESADLRIIL 299 Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365 E + + D I + KSD+ + +E ISS TG G++ L+ + LS Sbjct: 300 IE-DGRLPSGLGVADDDILVQAKSDILPSSSE---FAISSVTGRGIDRLVKAVSHRLS-- 353 Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAENLRLASVSLGKITGCVD 424 + +H RH +S V L++A + ++++ E+LR A V L + G V Sbjct: 354 LRAASAGTATHVRHRLAISSAVESLDLAKTKISEGFPVELVIEDLRQALVDLESLIGRVG 413 Query: 425 VEQLLDIIFSKFCIGK 440 VEQ+LD IF+ FC+GK Sbjct: 414 VEQVLDEIFANFCLGK 429 >gi|86136756|ref|ZP_01055334.1| tRNA modification GTPase [Roseobacter sp. MED193] gi|85826080|gb|EAQ46277.1| tRNA modification GTPase [Roseobacter sp. MED193] Length = 428 Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 171/439 (38%), Positives = 252/439 (57%), Gaps = 16/439 (3%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLDGRILDKG 64 +TIFA+++ + +S+IR+SGP+ V IC + P P K LR DG LD+ Sbjct: 2 DTIFALASAQGKAGVSVIRISGPNALGVANQICDR--PLPAKGRGLRRLIDFDGSQLDEA 59 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 L++ F +P SFTGE+ EF VHG AVV+ +L+ L + P+LRLA PGEF+RRA ENGK+D Sbjct: 60 LVLSFAAPASFTGENIVEFQVHGSTAVVSAVLDRLTRTPDLRLAEPGEFTRRALENGKLD 119 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L + E+LADLI +ETE QR+ + +SG L L +W L S IE +DF+ +EDV Sbjct: 120 LAQVEALADLIDAETEAQRKQAQVVLSGGLGQLAERWRVDLIRAASLIEVTIDFA-DEDV 178 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + EV + + D+ + K+ E IR+G+++ I+G N GKS+L N LA ++ Sbjct: 179 PVDVTPEVTTLLNSVAQDLEAETKGVKIAERIRDGFEVAIIGAPNVGKSTLLNMLAGREA 238 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AI ++ GTTRDV+ + +DL G V + DTAG+R+TDD VE GI+ E ADL + Sbjct: 239 AITSEYAGTTRDVIEVRMDLAGLPVTLLDTAGLRDTDDHVEGIGIELARKRAEQADLRVF 298 Query: 305 LKEINSKKEISF-PKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363 L E + ++ P + I + K+D+ E D IS TG+G++ L+ I L Sbjct: 299 LVEPDEAIDLEMRPGD---IRLRPKADMR----EISDGSISGKTGQGVDRLVTHISDTLK 351 Query: 364 NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG--LDIIAENLRLASVSLGKITG 421 ++ ++ + + RH + + L A L + +I AE++R A SL + G Sbjct: 352 DRSTQV--GVATRARHRDMMLAALNSLSEAQLVLQRGAEFYEIAAEDIRSAVRSLEMLVG 409 Query: 422 CVDVEQLLDIIFSKFCIGK 440 V VE LLD IFS FC+GK Sbjct: 410 RVGVENLLDEIFSSFCLGK 428 >gi|262371178|ref|ZP_06064499.1| tRNA modification GTPase mnmE [Acinetobacter johnsonii SH046] gi|262313908|gb|EEY94954.1| tRNA modification GTPase mnmE [Acinetobacter johnsonii SH046] Length = 454 Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 174/459 (37%), Positives = 270/459 (58%), Gaps = 30/459 (6%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62 + + TI A++T + +IRLSGP +++ + + +K P R A R F+ G ++D Sbjct: 5 YNRTTIAAIATPPGRGGVGVIRLSGPKSYEIAQALTQKDLPKARFAGFRQFYDASGEVMD 64 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 +GL I FP+P SFTGED E HGG + N +L L ++ + A GEFS RAFENGK Sbjct: 65 EGLAICFPNPNSFTGEDVVELQGHGGPVIQNALLGRLLELGAIA-AKAGEFSMRAFENGK 123 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 +DL++AE++ADLI + ++ R ++ + G S+ +++L H+R +EA +DF EEE Sbjct: 124 LDLVQAEAIADLIDATSQAAARSAVRSLQGAFSTKVNHVLEQLIHLRLHVEAAIDFPEEE 183 Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQ----GKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 + ++LN L + +++ ++Q + G+++R G ++VI G NAGKSSL NA Sbjct: 184 -IDFLVDGKILN----LLDGVTAAVNQVQQSARQGQLLREGLQVVIAGKPNAGKSSLLNA 238 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 LA + AIVTDI GTTRDVL + L G + ++DTAG+RET DIVEKEGI+R E+E Sbjct: 239 LAGIERAIVTDIAGTTRDVLHEKITLNGLPITLTDTAGLRETGDIVEKEGIRRAIKEIEQ 298 Query: 299 ADLILLLKEINSKKEI------SFPKNID---FIFIGTKSDLYST--YTEEYD---HLIS 344 ADL+LL+ +++ ++ F ++I+ + IG K DL T + E+++ H++ Sbjct: 299 ADLLLLVYDLSQGEDPLKLAQEYFAEHIEPKRLMLIGNKCDLMETTSHIEDFNGFRHIMV 358 Query: 345 SFTGE-GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCG 401 S E G++ LI I + F+ + + RHL + +T YL A L + G Sbjct: 359 SAKQETGVQALIEAITA--HAGFQPEEDTFIARTRHLDAMKRTQLYLAEAREQLVVYNAG 416 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE+LRLA +L +ITG + LL IF FCIGK Sbjct: 417 -ELVAESLRLAQNALSEITGDFSADDLLGKIFGSFCIGK 454 >gi|50086618|ref|YP_048128.1| tRNA modification GTPase TrmE [Acinetobacter sp. ADP1] gi|81392037|sp|Q6F6L1|MNME_ACIAD RecName: Full=tRNA modification GTPase mnmE gi|49532592|emb|CAG70306.1| GTPase involved in tRNA modification and in thiophene and furan oxidation [Acinetobacter sp. ADP1] Length = 462 Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 177/459 (38%), Positives = 265/459 (57%), Gaps = 34/459 (7%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64 + TI A++T + +IRLSGP + E + K P R A R F+ +G ++D+G Sbjct: 15 QTTIAAIATPPGRGGVGVIRLSGPKASLIAEHLTAKTLPAARMAGFRQFYDAEGLVMDEG 74 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 L++ FP+P SFTGED E HGG + N +LE L ++ + A GEFS RAFENGK+D Sbjct: 75 LVLYFPNPNSFTGEDVVELQGHGGPVIQNALLERLFEL-GAKAAKAGEFSMRAFENGKLD 133 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L++AE++ADLI + ++ R ++ + G S Q ++KL H+R +EA +DF EEE Sbjct: 134 LVQAEAIADLIDATSQAAARSAVRSLQGAFSLRINQVLEKLIHLRLHVEAAIDFPEEE-- 191 Query: 185 QNFSSKEVLND--ILFLKNDISSHISQ----GKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 + L D IL L +D+ + Q + G+++R G ++VI G NAGKSSL NA Sbjct: 192 -----IDFLADGKILALLDDVRDSVQQVQTSARQGQLLREGLQVVIAGKPNAGKSSLLNA 246 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 LA + AIVTDI GTTRDVL + L G + ++DTAG+RET DIVEKEGI+R E+E Sbjct: 247 LAGNERAIVTDIAGTTRDVLHERISLNGLPITLTDTAGLRETGDIVEKEGIRRAIKEIEQ 306 Query: 299 ADLILLLKEIN------SKKEISFPKNID---FIFIGTKSDLYSTYTE-----EYDHL-I 343 ADL+LL+ +++ + + F ++++ I IG K DL + + E + H+ + Sbjct: 307 ADLLLLVYDLSEGADPLALAQEYFAEHLEPRRLILIGNKCDLMTGHPELAQYQNFRHVTV 366 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCG 401 S+ G++ LI+ I + F+ + + RHL + +T +L A L G Sbjct: 367 SAKMDMGVQALIDAITA--HAGFQPEEDTFIARTRHLDAMKRTQLHLHEAREQLVVFHAG 424 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE+LRLA +L +ITG + LL IF FCIGK Sbjct: 425 -ELVAESLRLAQNALSEITGEFSADDLLGKIFGSFCIGK 462 >gi|19335743|gb|AAL85492.1| GTP-binding protein isoform IV [Homo sapiens] Length = 524 Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 178/496 (35%), Positives = 263/496 (53%), Gaps = 68/496 (13%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFF-GLDGRILDKG 64 TIFA+S+G I++IR SGP+ + + P R ASLR G LD+ Sbjct: 35 TIFALSSGQGRCGIAVIRTSGPASGHALRILTAPRDLPLARHASLRLLSDPRSGEPLDRA 94 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 L++ FP P+SFTGED EFHVHGG AVV+G+L+ L +P LR A GEF+RRAF NGK++ Sbjct: 95 LVLWFPGPQSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFANGKLN 154 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L E E LADLI +ETE QRR ++ + GEL L W + LT + +EA +DF E++++ Sbjct: 155 LTEVEGLADLIHAETEAQRRQALRQLDGELGHLCRGWAETLTKALAHVEAYIDFGEDDNL 214 Query: 185 Q------------------NFSSKEVLN--------------DILFLKNDISSHISQGKL 212 + + S + + + ++ L+ + +H+ + Sbjct: 215 EEGVLEQGGSTWWWGRKTPHISPQRLPSLSLSACLLSPTADIEVRALQVALGAHLRDARR 274 Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272 G+ +R+G +V+ G NAGKSSL N L++K V+IV+ PGTTRDVL +DL G+ V +S Sbjct: 275 GQRLRSGAHVVVTGPPNAGKSSLVNLLSRKPVSIVSPEPGTTRDVLETPVDLAGFPVLLS 334 Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF---------- 322 DTAG+RE VE+EG++R +E ADLIL + + + +++ P + +F Sbjct: 335 DTAGLREGVGPVEQEGVRRARERLEQADLILAMLDAS---DLASPSSCNFLATVVASVGA 391 Query: 323 ----------IFIGTKSDLYSTYTEEYDH------LISSFTGEGLEELINKIKSILSNKF 366 + + KSDL S L+S TGEGL+ L+ ++ L+ Sbjct: 392 QSPSDSSQRLLLVLNKSDLLSPEGPGPGPDLPPHLLLSCLTGEGLDGLLEALRKELAAVC 451 Query: 367 KKLPFSIP--SHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVD 424 P + RH +HL + L KD L + AE LR+A L ++TG Sbjct: 452 GDPSTDPPLLTRARHQHHLQGCLDALGHYK-QSKD--LALAAEALRVARGHLTRLTGGGG 508 Query: 425 VEQLLDIIFSKFCIGK 440 E++LDIIF FC+GK Sbjct: 509 TEEILDIIFQDFCVGK 524 >gi|193082988|ref|NP_598399.2| tRNA modification GTPase GTPBP3, mitochondrial isoform IV [Homo sapiens] Length = 524 Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 178/496 (35%), Positives = 263/496 (53%), Gaps = 68/496 (13%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFF-GLDGRILDKG 64 TIFA+S+G I++IR SGP+ + + P R ASLR G LD+ Sbjct: 35 TIFALSSGQGRCGIAVIRTSGPASGHALRILTAPRDLPLARHASLRLLSDPRSGEPLDRA 94 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 L++ FP P+SFTGED EFHVHGG AVV+G+L+ L +P LR A GEF+RRAF NGK++ Sbjct: 95 LVLWFPGPQSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFANGKLN 154 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L E E LADLI +ETE QRR ++ + GEL L W + LT + +EA +DF E++++ Sbjct: 155 LTEVEGLADLIHAETEAQRRQALRQLDGELGHLCRGWAETLTKALAHVEAYIDFGEDDNL 214 Query: 185 Q------------------NFSSKEVLN--------------DILFLKNDISSHISQGKL 212 + + S + + + ++ L+ + +H+ + Sbjct: 215 EEGVLEQGGSTWWWGRKTPHISPQRLPSLSLSACLLSPTADIEVRALQVALGAHLRDARR 274 Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272 G+ +R+G +V+ G NAGKSSL N L++K V+IV+ PGTTRDVL +DL G+ V +S Sbjct: 275 GQRLRSGVHVVVTGPPNAGKSSLVNLLSRKPVSIVSPEPGTTRDVLETPVDLAGFPVLLS 334 Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF---------- 322 DTAG+RE VE+EG++R +E ADLIL + + + +++ P + +F Sbjct: 335 DTAGLREGVGPVEQEGVRRARERLEQADLILAMLDAS---DLASPSSCNFLATVVASVGA 391 Query: 323 ----------IFIGTKSDLYSTYTEEYDH------LISSFTGEGLEELINKIKSILSNKF 366 + + KSDL S L+S TGEGL+ L+ ++ L+ Sbjct: 392 QSPSDSSQRLLLVLNKSDLLSPEGPGPGPDLPPHLLLSCLTGEGLDGLLEALRKELAAVC 451 Query: 367 KKLPFSIP--SHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVD 424 P + RH +HL + L KD L + AE LR+A L ++TG Sbjct: 452 GDPSTDPPLLTRARHQHHLQGCLDALGHYK-QSKD--LALAAEALRVARGHLTRLTGGGG 508 Query: 425 VEQLLDIIFSKFCIGK 440 E++LDIIF FC+GK Sbjct: 509 TEEILDIIFQDFCVGK 524 >gi|255320708|ref|ZP_05361885.1| tRNA modification GTPase TrmE [Acinetobacter radioresistens SK82] gi|255302324|gb|EET81564.1| tRNA modification GTPase TrmE [Acinetobacter radioresistens SK82] Length = 451 Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 175/457 (38%), Positives = 262/457 (57%), Gaps = 34/457 (7%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66 TI A++T + +IRLSGP + + E + ++ P R A+ R F+ + ++D+GL+ Sbjct: 6 TIAAIATPPGRGGVGVIRLSGPKAYMIAEQLTQRSLPKARMAAFRQFYDAEQLVMDEGLV 65 Query: 67 IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126 I FP+P SFTGED E HGG + N +L L ++ + A GEFS RAFENGK+DL+ Sbjct: 66 ICFPNPYSFTGEDVVELQGHGGPVIQNALLSRLFELGAIA-AKAGEFSMRAFENGKLDLV 124 Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186 +AE++ADLI + ++ R ++ + G S ++KL H+R +EA +DF EEE Sbjct: 125 QAEAIADLIDATSQAAARSAVRSLQGAFSVKVNSVLEKLIHLRLHVEAAIDFPEEE---- 180 Query: 187 FSSKEVLND--ILFLKNDISSHIS----QGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 + L D IL L +D++S ++ + G+++R G ++VI G NAGKSSL NALA Sbjct: 181 ---IDFLADGKILKLLDDVASSVTLVQQSARQGQLLREGLQVVIAGKPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 D AIVTDI GTTRDVL + L G + ++DTAG+RET DIVE+EGI+R E+E AD Sbjct: 238 GNDRAIVTDIAGTTRDVLHEKISLNGLPITLTDTAGLRETGDIVEQEGIRRAIKEIEQAD 297 Query: 301 LILLLKEINSKKE-ISFPKNI--------DFIFIGTKSDLYSTYTEE-----YDHL-ISS 345 L+LL+ +++ ++ + +N I IG K DL E + H+ +S+ Sbjct: 298 LLLLVYDLSQGEDPLKLAQNYFAEHLEPKRLILIGNKCDLIGVQPEAGKYQGFRHISVSA 357 Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLD 403 G++ LI I + F+ + + RHL + +T YL A L + G + Sbjct: 358 KMETGVQTLIEAITN--HAGFQPEEDTFIARTRHLDAMKRTQAYLAEAREQLTDFHAG-E 414 Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++AE+LRLA +L +ITG + LL IF FCIGK Sbjct: 415 LVAESLRLAQNALSEITGEFSADDLLGKIFGSFCIGK 451 >gi|262380662|ref|ZP_06073815.1| tRNA modification GTPase TrmE [Acinetobacter radioresistens SH164] gi|262297610|gb|EEY85526.1| tRNA modification GTPase TrmE [Acinetobacter radioresistens SH164] Length = 454 Score = 283 bits (724), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 175/457 (38%), Positives = 262/457 (57%), Gaps = 34/457 (7%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66 TI A++T + +IRLSGP + + E + ++ P R A+ R F+ + ++D+GL+ Sbjct: 9 TIAAIATPPGRGGVGVIRLSGPKAYMIAEQLTQRSLPKARMAAFRQFYDAEQLVMDEGLV 68 Query: 67 IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126 I FP+P SFTGED E HGG + N +L L ++ + A GEFS RAFENGK+DL+ Sbjct: 69 ICFPNPYSFTGEDVVELQGHGGPVIQNALLSRLFELGAIA-AKAGEFSMRAFENGKLDLV 127 Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186 +AE++ADLI + ++ R ++ + G S ++KL H+R +EA +DF EEE Sbjct: 128 QAEAIADLIDATSQAAARSAVRSLQGAFSVKVNSVLEKLIHLRLHVEAAIDFPEEE---- 183 Query: 187 FSSKEVLND--ILFLKNDISSHIS----QGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 + L D IL L +D++S ++ + G+++R G ++VI G NAGKSSL NALA Sbjct: 184 ---IDFLADGKILKLLDDVASSVTLVQQSARQGQLLREGLQVVIAGKPNAGKSSLLNALA 240 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 D AIVTDI GTTRDVL + L G + ++DTAG+RET DIVE+EGI+R E+E AD Sbjct: 241 GNDRAIVTDIAGTTRDVLHEKISLNGLPITLTDTAGLRETGDIVEQEGIRRAIKEIEQAD 300 Query: 301 LILLLKEINSKKE-ISFPKNI--------DFIFIGTKSDLYSTYTEE-----YDHL-ISS 345 L+LL+ +++ ++ + +N I IG K DL E + H+ +S+ Sbjct: 301 LLLLVYDLSQGEDPLKLAQNYFAEHLEPKRLILIGNKCDLIGVQPEAGKYQGFRHISVSA 360 Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLD 403 G++ LI I + F+ + + RHL + +T YL A L + G + Sbjct: 361 KMETGVQTLIEAITN--HAGFQPEEDTFIARTRHLDAMKRTQAYLAEAREQLTDFHAG-E 417 Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++AE+LRLA +L +ITG + LL IF FCIGK Sbjct: 418 LVAESLRLAQNALSEITGEFSADDLLGKIFGSFCIGK 454 >gi|254515875|ref|ZP_05127935.1| tRNA modification GTPase TrmE [gamma proteobacterium NOR5-3] gi|219675597|gb|EED31963.1| tRNA modification GTPase TrmE [gamma proteobacterium NOR5-3] Length = 458 Score = 283 bits (723), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 176/456 (38%), Positives = 255/456 (55%), Gaps = 23/456 (5%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63 + +TI A++TG + IIRLSGP F V + + R+A G +LD+ Sbjct: 7 DSDTITAIATGPGAGGVGIIRLSGPKAFSVAQAVTGVTAK-ARQAHYVQIHDRHGDVLDQ 65 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 GLL+ FP P SFTGED AE H HGG ++ +L E + R A PGEFS+RAF N KI Sbjct: 66 GLLLQFPGPHSFTGEDVAELHCHGGPVLLRTVLRECIHL-GARQAAPGEFSQRAFLNNKI 124 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL++AE++ADLISS TE R + +SG S+ +++L +R FIEA +DF EEE Sbjct: 125 DLVQAEAIADLISSSTEAAARSASRSLSGAFSTQVDALLEQLIRLRVFIEAAIDFPEEE- 183 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 + + +VL + ++ I S ++ + G +R+G K+VI G NAGKSSL N LA++D Sbjct: 184 IDFIAESDVLERLESIEASIDSLLAGARRGRTLRDGLKLVIAGAPNAGKSSLLNQLAEQD 243 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303 AIVTDIPGTTRDVL + ++G + I DTAG+R++ D +E+EGI+R E+++AD IL Sbjct: 244 SAIVTDIPGTTRDVLREYVQIDGLPLHIVDTAGLRDSADAIEQEGIRRARTEMQSADHIL 303 Query: 304 LL---KEINSKKEIS---------FPKNIDFIFIGTKSDLYSTYT------EEYDHLISS 345 L+ +IN+ K+ + P + I K DL T + + +S+ Sbjct: 304 LVIDSSQINNTKDSTTLIAAYKGDLPPAVPITLIRNKCDLSETPAFIDRDKDVTEISLSA 363 Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG-LDI 404 +G+G+ L + S + + +RH+ L +L K G ++ Sbjct: 364 RSGDGIALLRQHLLSA-AGMSDSDSSDFSARERHVLALEDCAHHLRQGLFQLKQHGAAEL 422 Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 IAE+LR A SLG ITG ++LL IFS FCIGK Sbjct: 423 IAEDLRYAQDSLGSITGSFSSDELLGEIFSSFCIGK 458 >gi|253991869|ref|YP_003043225.1| tRNA modification GTPase TrmE [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253783319|emb|CAQ86484.1| trna modification gtpase trme [Photorhabdus asymbiotica] Length = 454 Score = 283 bits (723), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 170/455 (37%), Positives = 259/455 (56%), Gaps = 25/455 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + I+R+SGP QV E + K P PR A F +D R+LD+G+ Sbjct: 5 DTIVAQATPPGRGGVGILRVSGPKAAQVAEVVLGKL-PKPRYADYLPFRDVDNRVLDQGI 63 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 I FP P SFTGED E HGG +++ +L+ + +P +R+ANPGEFS RAF N K+DL Sbjct: 64 AIYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIANPGEFSERAFLNDKLDL 123 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E R +M + G S+ Q ++ LTH+R ++EA +DF +EE + Sbjct: 124 AQAEAIADLIDASSEQAARSAMNSLQGAFSTQVHQMVEALTHLRIYVEAAIDFPDEE-ID 182 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S ++ ++ + + SQ + G ++R G K+VI G NAGKSSL NALA +D A Sbjct: 183 FLSDGKIEANLDNVIAKLDRVRSQARQGSLLREGMKVVIAGRPNAGKSSLLNALAGRDAA 242 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+E AD +L + Sbjct: 243 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFM 302 Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYS-----TYTEEYDHL-ISSFTG 348 + + + P+++ + K+D+ + T Y + +S+ +G Sbjct: 303 VDSTTTDAVEPVEIWPEFMARLPESLPITVVRNKTDMTNEETSITEVRGYSLIRLSAHSG 362 Query: 349 EGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDII 405 EG++ L + +K + N + F + +RHL L+ +L+ L G +++ Sbjct: 363 EGIDLLRDHLKETMGFNSNTEGGFL--ARRRHLQALNTAAEHLQQGHEQLVVARSG-ELL 419 Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 AE LRLA +L +ITG + LL IFS FCIGK Sbjct: 420 AEELRLAQQTLSEITGEFTSDDLLGRIFSSFCIGK 454 >gi|254461121|ref|ZP_05074537.1| tRNA modification GTPase TrmE [Rhodobacterales bacterium HTCC2083] gi|206677710|gb|EDZ42197.1| tRNA modification GTPase TrmE [Rhodobacteraceae bacterium HTCC2083] Length = 430 Score = 283 bits (723), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 176/440 (40%), Positives = 251/440 (57%), Gaps = 16/440 (3%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TIFA++T + +S+IR+SG E C+ P KA+LR L G ++D+ L Sbjct: 2 DTIFALATAQGKAGVSVIRISGARARDAGEAFCENL-PVSHKAALRNLTDLQGTLIDQAL 60 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 ++ F +SFTGE EFH+HG A+V ++E L + LRLA PGEF+RRA ENGK+DL Sbjct: 61 VLTFEDRKSFTGEPVVEFHLHGSTAIVARMMELLGGVVGLRLAEPGEFTRRALENGKLDL 120 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 + E LADLI +ETE QR+ ++ ++G+L W L S +EA +DF+ +EDV Sbjct: 121 AQVEGLADLIDAETESQRKQAVRVLAGDLGRTAEIWRSDLIRAASLLEATIDFA-DEDVP 179 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 + EVL + + I K E IR G+++ I+G N GKS+L N++A +D A Sbjct: 180 IDVTPEVLVLLERSERAIIKEAEGVKTAERIRAGFEVAIIGPPNVGKSTLLNSIAGRDAA 239 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 I ++ GTTRDV+ + LDL G V I DTAG+RET+D VEK GI R E ADL + L Sbjct: 240 ITSEYAGTTRDVIEVKLDLNGLPVTILDTAGLRETEDFVEKIGIDRALDRAEKADLRVFL 299 Query: 306 KEINSKKEISFP---KNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362 K S E FP ++ D +G K+DL+ T +S TGEG++ L+ I L Sbjct: 300 K---STVEEQFPIEQRSGDIEMLG-KADLFVDRTRRS---VSGKTGEGVDHLVAAISKTL 352 Query: 363 SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLASVSLGKIT 420 + + I + +RH L + +YL A L+ D++AE++R A +L + Sbjct: 353 LD--RSASAGIATRERHRQALLSSQKYLSAAKEGLDFGPDYYDLVAEDMRSAIRALNSLI 410 Query: 421 GCVDVEQLLDIIFSKFCIGK 440 G VDVE LLD IFS FC+GK Sbjct: 411 GHVDVENLLDEIFSSFCLGK 430 >gi|119605005|gb|EAW84599.1| GTP binding protein 3 (mitochondrial), isoform CRA_c [Homo sapiens] Length = 498 Score = 282 bits (722), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 171/450 (38%), Positives = 253/450 (56%), Gaps = 24/450 (5%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFF-GLDGRILDKG 64 TIFA+S+G I++IR SGP+ + + P R ASLR G LD+ Sbjct: 57 TIFALSSGQGRCGIAVIRTSGPASGHALRILTAPRDLPLARHASLRLLSDPRSGEPLDRA 116 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 L++ FP P+SFTGED EFHVHGG AVV+G+L+ L +P LR A GEF+RRAF NGK++ Sbjct: 117 LVLWFPGPQSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFANGKLN 176 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR-----SFIEADLDFS 179 L E E LADLI +ETE QRR ++ + GEL L W + LT + +EA +DF Sbjct: 177 LTEVEGLADLIHAETEAQRRQALRQLDGELGHLCRGWAETLTKASPPFALAHVEAYIDFG 236 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 E+++++ ++ ++ L+ + +H+ + G+ +R+G +V+ G NAGKSSL N L Sbjct: 237 EDDNLEEGVLEQADIEVRALQVALGAHLRDARRGQRLRSGAHVVVTGPPNAGKSSLVNLL 296 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 ++K V+IV+ PGTTRDVL +DL G+ V +SDTAG+RE VE+EG++R E+ Sbjct: 297 SRKPVSIVSPEPGTTRDVLETPVDLAGFPVLLSDTAGLREGVGPVEQEGVRRAR---ESC 353 Query: 300 D-LILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFTGEGLE 352 + L ++ + ++ + + + KSDL S L+S TGEGL+ Sbjct: 354 NFLATVVASVGAQSPSDSSQRLLLVL--NKSDLLSPEGPGPGPDLPPHLLLSCLTGEGLD 411 Query: 353 ELINKIKSILSNKFKKLPFSIP--SHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLR 410 L+ ++ L+ P + RH +HL + L KD L + AE LR Sbjct: 412 GLLEALRKELAAVCGDPSTDPPLLTRARHQHHLQGCLDALGHYK-QSKD--LALAAEALR 468 Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +A L ++TG E++LDIIF FC+GK Sbjct: 469 VARGHLTRLTGGGGTEEILDIIFQDFCVGK 498 >gi|198431401|ref|XP_002128736.1| PREDICTED: similar to GTP binding protein 3 [Ciona intestinalis] Length = 544 Score = 282 bits (721), Expect = 9e-74, Method: Compositional matrix adjust. Identities = 179/476 (37%), Positives = 271/476 (56%), Gaps = 46/476 (9%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLR-YFFGLDGRIL 61 + TI+AVS+G +SIIR+SG + K+K P PRKA ++ + + +L Sbjct: 76 HQSTIYAVSSGFGKCGVSIIRVSGKCSPNALLKLTKRKSLPGPRKAIVQPIYHPVSNLML 135 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121 D+ L++ FP P SFTGED EF VHGG AV+ +L L+ + LR A G+++++AF NG Sbjct: 136 DRSLVLWFPRPSSFTGEDVCEFQVHGGPAVIASVLNALSCITGLRPAEAGDYTKQAFLNG 195 Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181 K+DL E E L DLI +ETE QRR ++ M G L+SLY W +++ + +EA +DF E+ Sbjct: 196 KLDLTEVEGLGDLIHAETEAQRRQALHQMEGSLASLYKGWSNEVLRCVAHLEAFIDFEED 255 Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 ED+ + + + + I H+S + GE +R+G ++ I+G N GKSSL NA+ + Sbjct: 256 EDLDPDIICNIRLNTTKMISKIQHHLSDERRGERLRDGVRVAIIGKPNVGKSSLLNAVTQ 315 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 + AIV+ IPGTTRDV+ LD+ G+ V ISDTAG+R + ++EK+G+ R +++ + ADL Sbjct: 316 RPAAIVSPIPGTTRDVIETALDISGFPVLISDTAGLRRSHGVIEKQGVDRAYVKAKEADL 375 Query: 302 ILLL---KEINSKKEISFPKNI---------------DFIFIGTKSDLYST--------Y 335 ++L+ +E+N+K +F + I + I I KSDL + Sbjct: 376 VVLVVNSQEVNNKDLNNFSEFIKQHAHELHLEKTSLENLIVILNKSDLLESEKLKKIRDL 435 Query: 336 TEEYDH--LISSFTGEGLEELINKIKSILSNKFKKLPFS-----IPS--HKRHLYHLSQT 386 EY LIS T +G ++L+ S + +KL PS +RH HL+ Sbjct: 436 QSEYASVLLISCKTLDGFQDLLQ----TFSKRLEKLCGGSCVGETPSVTQQRHRLHLNNC 491 Query: 387 VRYLEMAS--LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 V +LE + LN KD + I AE R+A LG+I+G + E +LD+IF FCIGK Sbjct: 492 VSFLEKGNQFLN-KD--VVIAAEYFRMALTELGRISGKIGSEDILDVIFKDFCIGK 544 >gi|73986022|ref|XP_541954.2| PREDICTED: similar to GTP binding protein 3 (mitochondrial) isoform V isoform 1 [Canis familiaris] Length = 492 Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 180/461 (39%), Positives = 255/461 (55%), Gaps = 30/461 (6%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLDGR-ILDKG 64 TIFA+S+G I++IR SGP+ + + P R A LR R LD+ Sbjct: 35 TIFALSSGQGRCGIAVIRTSGPASGHALRSLTASRDLPPARSACLRLLSHPHSREPLDRA 94 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 L++ FP P+SFTGED AEFHVHGG AVV+G+L+ L +P LR A GEF+RRAF +GK+ Sbjct: 95 LVLWFPGPQSFTGEDCAEFHVHGGSAVVSGVLQALGSVPGLRPAEAGEFTRRAFAHGKLS 154 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L E E LADLI +ETE QRR ++ + GEL L W LT + +EA +DF E++++ Sbjct: 155 LTEVEGLADLIHAETEAQRRQALRQLDGELGHLCHGWAKTLTKALAHVEAYIDFGEDDNL 214 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + + + + L+ +S+H+ + G+ +R+G IV+ G NAGKSSL N L++K V Sbjct: 215 EEGVLERANSQVRELELALSAHLRDARRGQRLRSGAHIVVTGPPNAGKSSLVNLLSRKPV 274 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 +IV+ PGTTRDVL +DL G+ +SDTAG+RE VE+EG++R +E ADLIL Sbjct: 275 SIVSPEPGTTRDVLETPVDLAGFPALLSDTAGLREGAGPVEQEGVRRARQRLEQADLILA 334 Query: 305 L---KEINSKKEISFPKNI--------------DFIFIGTKSDLYSTYTEEYDH------ 341 + ++ S SF + + + KSDL + Sbjct: 335 VLDATDLASPSSRSFLDTVVVPAGAGSPSENSQRLLLVLNKSDLLPRGGPDLSPHLPPHL 394 Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFSIP--SHKRHLYHLSQTVRYLEMASLNEKD 399 L+S TGEGL+ L+ ++ L+ P + RH +HL + L KD Sbjct: 395 LLSCLTGEGLDGLLEALRKELAEVCGDPSTGPPLLTRARHQHHLQGCLDALSHYK-QTKD 453 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L + AE LRLA L +ITG D E++LDIIF FC+GK Sbjct: 454 --LALAAEALRLARGHLARITGGGDTEEILDIIFRDFCVGK 492 >gi|301753859|ref|XP_002912763.1| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial-like isoform 1 [Ailuropoda melanoleuca] Length = 491 Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 181/461 (39%), Positives = 261/461 (56%), Gaps = 31/461 (6%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYF-FGLDGRILDKG 64 T+FA+S+G I++IR SGP+ + + P R A LR G LD+ Sbjct: 35 TVFALSSGQGRCGIAVIRTSGPASGHALRSLTAPQDLPPARSACLRLLSHPRSGEPLDRA 94 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 L++ FP P+SFTGED AEFHVHGG AVV+G+L+ L +P LR A GEF+RRAF +GK+ Sbjct: 95 LVLWFPGPQSFTGEDCAEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFAHGKLS 154 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L E E LADLI +ETE QRR ++ + GEL L W LT + +EA +DFSE++++ Sbjct: 155 LTEVEGLADLIHAETEAQRRQALRQLDGELGHLCRAWAKTLTKALAHVEAYIDFSEDDNL 214 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + + V + + L+ +S+H+ + G+ +R+G +V+ G NAGKSSL N L++K V Sbjct: 215 EEGVLERVDSQVRELELALSAHLRDARRGQRLRSGAHVVVAGPPNAGKSSLVNLLSRKPV 274 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 +IV+ PGTTRDVL +DL G+ +SDTAG+RE VE+EG++R +E ADLIL Sbjct: 275 SIVSPEPGTTRDVLETPVDLAGFPALLSDTAGLREGVGPVEQEGVRRARERLEQADLILA 334 Query: 305 L---KEINSKKEISF------------PK--NIDFIFIGTKSDLYSTYTEEYDH------ 341 + ++ S +F PK + + + KSDL + Sbjct: 335 VLDASDLASPSSCNFLDTIVTPAGAGNPKENSQRLLLVLNKSDLLPRGGPDPSPNLPPHL 394 Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFSIP--SHKRHLYHLSQTVRYLEMASLNEKD 399 L+S TGEGL+ L+ ++ L+ P + P + RH +HL + L KD Sbjct: 395 LLSCLTGEGLDGLLEALRKELAEVCGD-PSTGPLLTRARHQHHLQGCLDALGHYK-QTKD 452 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L + AE LRLA LG+ITG +++LDIIF FC+GK Sbjct: 453 --LALAAEALRLARGHLGRITGGGGTDEILDIIFRDFCVGK 491 >gi|258543708|ref|YP_003189141.1| tRNA modification GTPase TrmE [Acetobacter pasteurianus IFO 3283-01] gi|256634786|dbj|BAI00762.1| tRNA modification GTPase TrmE/ThdF [Acetobacter pasteurianus IFO 3283-01] gi|256637842|dbj|BAI03811.1| tRNA modification GTPase TrmE/ThdF [Acetobacter pasteurianus IFO 3283-03] gi|256640896|dbj|BAI06858.1| tRNA modification GTPase TrmE/ThdF [Acetobacter pasteurianus IFO 3283-07] gi|256643951|dbj|BAI09906.1| tRNA modification GTPase TrmE/ThdF [Acetobacter pasteurianus IFO 3283-22] gi|256647006|dbj|BAI12954.1| tRNA modification GTPase TrmE/ThdF [Acetobacter pasteurianus IFO 3283-26] gi|256650059|dbj|BAI16000.1| tRNA modification GTPase TrmE/ThdF [Acetobacter pasteurianus IFO 3283-32] gi|256653049|dbj|BAI18983.1| tRNA modification GTPase TrmE/ThdF [Acetobacter pasteurianus IFO 3283-01-42C] gi|256656103|dbj|BAI22030.1| tRNA modification GTPase TrmE/ThdF [Acetobacter pasteurianus IFO 3283-12] Length = 443 Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 172/448 (38%), Positives = 251/448 (56%), Gaps = 21/448 (4%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFF---GLDGR 59 ++TIFA+STG +AI+++R+SG + +C K P RKA LR + + Sbjct: 7 QAEDTIFALSTGIERAAIAVLRVSGAGSRDILLRVCGKV-PDARKAVLRKIWTNASVQDD 65 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 +LD+ L++ FP P S+TGED E H+H G A++ + E L R A PGEF+RRAF Sbjct: 66 LLDEALVLWFPGPRSYTGEDGFELHLHAGPAIIRAVSEALVNA-GARPAEPGEFTRRAFV 124 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NG++DL+EAE +ADL+++ET+ QR+L++ G LS LY W ++L + +F EA +DF Sbjct: 125 NGRMDLVEAEGIADLVAAETDGQRKLALAQADGALSHLYSGWSERLKKLLAFQEALIDFP 184 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 +E D+ + +I L++++ H++ G+ GE IR G I G NAGKSSL N L Sbjct: 185 DE-DLPPEVEDGINQEIQKLQSEMQQHVADGEHGERIRQGVVFAITGPPNAGKSSLLNWL 243 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 +D AIV+ GTTRD L + L G V DTAG+RETDD +E EG++R V+ A Sbjct: 244 TGRDTAIVSSKAGTTRDALEVACILAGIKVTFVDTAGLRETDDEIEAEGVRRALFHVKQA 303 Query: 300 DLILLLKEINSKKEISFPKNIDFIFIGTKSD---LYSTYTEEYDHLISSFTGEGLEELI- 355 D +L + N + FP I IG K+D + T + IS G GL EL Sbjct: 304 DCVLQMFPANEAPDDVFPGA---ILIGNKADIGKIPKTIQGKPVLAISLKKGNGLPELYA 360 Query: 356 ---NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLA 412 K++ + + P + RH + + V+ L+ A + ++ E LRLA Sbjct: 361 FLKRKVEELTAASTSGAPLL--TRARHKAGVLEAVQCLQAALQQDWP---ELRGEELRLA 415 Query: 413 SVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +LG++TG V VE LLD IF +FCIGK Sbjct: 416 MRALGRLTGHVGVEDLLDTIFGQFCIGK 443 >gi|296233236|ref|XP_002761925.1| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial isoform 2 [Callithrix jacchus] Length = 471 Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 171/444 (38%), Positives = 250/444 (56%), Gaps = 17/444 (3%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFF-GLDGRILDKG 64 TIFA+S+G +++IR SGP+ + + P R ASLR G LD+ Sbjct: 35 TIFALSSGQGRCGVAVIRTSGPASGHALRILTAPRDLPPARHASLRLLSDPRSGEPLDRA 94 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 L++ FP P+SFTGED EFHVHGG AVV+G+L L +P LR A GEF+RRAF +GK++ Sbjct: 95 LVLWFPGPKSFTGEDCVEFHVHGGPAVVSGVLRALGSVPGLRPAEAGEFTRRAFAHGKLN 154 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L E E LADLI +ETE QRR ++ + GEL L W + LT + +EA +DF E++++ Sbjct: 155 LTEVEGLADLIHAETEAQRRQALRQLDGELGHLCRGWAETLTKALAHVEAYIDFGEDDNL 214 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + ++ ++ L+ + +H+ + G+ +R+G +V+ G NAGKSSL N L++K V Sbjct: 215 EEGVLEQANIEVRALEVALGAHLRDARRGQRLRSGAHVVVTGPPNAGKSSLVNLLSRKPV 274 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 +IV+ PGTTRDVL +DL G+ V +SDTAG+RE VE+EG++R E+ + + Sbjct: 275 SIVSPEPGTTRDVLETPVDLAGFPVLLSDTAGLREGVGPVEQEGVRRAR---ESCNFLAT 331 Query: 305 LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFTGEGLEELINKI 358 + + S + + KSDL ST L+S TGEGL+ L+ + Sbjct: 332 VVASAGAQSRSSSSQRLLLVL-NKSDLLSTEGPGPGPDMPPHLLLSCVTGEGLDGLLEAL 390 Query: 359 KSILSNKFKKLPFSIP--SHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSL 416 K L+ P + RH +HL + L KD L + AE LR+A L Sbjct: 391 KMELAAVCGDPSTGPPLLTRARHQHHLQGCLDALGHYK-QSKD--LALAAEALRVARGHL 447 Query: 417 GKITGCVDVEQLLDIIFSKFCIGK 440 ++TG E++LDIIF FC+GK Sbjct: 448 TRLTGGGGTEEILDIIFRDFCVGK 471 >gi|295691564|ref|YP_003595257.1| tRNA modification GTPase TrmE [Caulobacter segnis ATCC 21756] gi|295433467|gb|ADG12639.1| tRNA modification GTPase TrmE [Caulobacter segnis ATCC 21756] Length = 446 Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 179/456 (39%), Positives = 263/456 (57%), Gaps = 33/456 (7%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TIFA++T A +A++++R+SGP+ + E + + P PR A+LR DG LD+ L Sbjct: 3 DTIFALATAAGRAAVAVVRISGPATLRTVEALAGRA-PAPRMAALRKLRH-DGVELDEAL 60 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 ++ F P S+TGEDSAEFHVHGG AVV L LRLA PGEF+RRAFENGK+DL Sbjct: 61 VLRFEGPASYTGEDSAEFHVHGGRAVVE-ALLSALSGLGLRLAEPGEFTRRAFENGKLDL 119 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE +ADLI +ETE QRR ++ + G LS Y +W D L + +EA +DF +E D+ Sbjct: 120 AQAEGVADLIDAETEAQRRQALGQVGGALSQRYDRWRDLLVQSLAMLEAAVDFPDE-DLP 178 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 ++ + L ++ + ++ G +R+GY+I ++G NAGKS+L N L ++D A Sbjct: 179 EEVAERARPGLRVLAEELDAALADVSRGRRVRDGYRIALVGAPNAGKSTLLNGLVERDAA 238 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL- 304 IVTD PGTTRDV+ + L L GY V I+DTAG+RET+D +E EG++R E ADL L Sbjct: 239 IVTDTPGTTRDVIEVPLVLGGYRVLIADTAGLRETEDAIEAEGVRRARRWAEEADLRLWV 298 Query: 305 -----LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGL-------- 351 +K++ + + P D++ + K+D+ + + + + + EGL Sbjct: 299 VDGFHVKQVEALESTVRPG--DWLIL-NKADIAA--ADALEEASARWVSEGLVVRQLAAR 353 Query: 352 -----EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI-- 404 EL + + + F + RH LS+ YL A D GL++ Sbjct: 354 QEGAVAELRTDLAAHVIEALSGAEFPAATRLRHAERLSEARDYLARAL---SDIGLEVEL 410 Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 AE++RLA+ +L KITG VD E +L +FS FCIGK Sbjct: 411 AAEDVRLAARALEKITGRVDPEDVLGRVFSTFCIGK 446 >gi|242011052|ref|XP_002426271.1| GTPase mss1, putative [Pediculus humanus corporis] gi|212510334|gb|EEB13533.1| GTPase mss1, putative [Pediculus humanus corporis] Length = 694 Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 175/471 (37%), Positives = 266/471 (56%), Gaps = 61/471 (12%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLDGRIL---D 62 TIFA+S+G +++IR+SGP+ + + K K+ P PR ASL+ D + L D Sbjct: 21 TIFALSSGQGKCGVAVIRVSGPNAREAILKMTKCKELPKPRMASLQLI--RDPQTLEELD 78 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 KGL++ FP P+SFTGEDS EF +HGG AV+ +L L+K+ N R+A PG+F++RAF GK Sbjct: 79 KGLILWFPEPKSFTGEDSCEFQIHGGPAVIESVLTALSKLSNFRMAEPGDFTKRAFHAGK 138 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 +DL+E E L DLI +ET +QR+ ++ M G LS LY W L + +EA +DFSE+E Sbjct: 139 LDLVEVEGLGDLIHAETNLQRKQALYQMEGNLSKLYKTWRANLLKNLAHVEAYIDFSEDE 198 Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 +++N + V ++ LKN+I +H+S G+ GE +R+G K I+G NAGKSSL N L +K Sbjct: 199 NIENDIIENVHKNLTVLKNEIENHLSDGRKGERLRDGIKTAIIGEPNAGKSSLLNILCQK 258 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADL 301 AIVT IPGTTRD +++ L+L G+ + + DTAG+R DIVE+EGI RT +D+ Sbjct: 259 PAAIVTPIPGTTRDTISVHLNLCGFPLTLVDTAGLRSNATDIVEQEGISRTKKVTGQSDI 318 Query: 302 ILL-------LKEINSKKEISFP----------KNIDF-------------------IFI 325 +LL + + + P KN+D IF+ Sbjct: 319 LLLIIDAKMLMSHFQTTSSLHKPDILSVIKAHIKNLDLKTDCNITLESLMKNNLQKCIFV 378 Query: 326 GTKSDL--------YSTYTEEYD---HLISSFTGEGLEELINKI----KSILSNKFKKLP 370 K DL + + +E + LIS T EG+ +L+ + + + N ++ P Sbjct: 379 LNKIDLLNNEEKEVFQAFMKENNFTFSLISCKTEEGVNQLLQSMAKTMQHVCGNPTRENP 438 Query: 371 FSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITG 421 + ++ RH YHL+++++YL D + + A+ LRL+ +GKI G Sbjct: 439 --VLTNSRHRYHLTESLKYLN-EYFKFADTDITLSAQKLRLSLRHIGKIMG 486 >gi|146278700|ref|YP_001168859.1| tRNA modification GTPase TrmE [Rhodobacter sphaeroides ATCC 17025] gi|205415803|sp|A4WVZ0|MNME_RHOS5 RecName: Full=tRNA modification GTPase mnmE gi|145556941|gb|ABP71554.1| tRNA modification GTPase trmE [Rhodobacter sphaeroides ATCC 17025] Length = 428 Score = 280 bits (717), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 163/439 (37%), Positives = 258/439 (58%), Gaps = 16/439 (3%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQ-VCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64 +TI+A+++ + ++++RLSGP ++ V F P R+A+LR +G +LD+ Sbjct: 2 DTIYALASARGKAGVAVLRLSGPQAYEAVAAFGVSL--PEVRRAALRRLT-WNGEVLDEA 58 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 L+++F SFTGE SAE H+HG A V+ +L+ L+++P LRLA+ GEF+RRA +NG++D Sbjct: 59 LILLFAEGASFTGERSAEIHLHGSAAAVSSVLQALSELPGLRLADAGEFTRRALDNGRLD 118 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L + E LADL+ SETE QRR +M SG + +W L + +EA +DF+ +EDV Sbjct: 119 LAQVEGLADLLDSETEAQRRQAMRVFSGAIGKRTERWRSDLIRAAALLEATIDFA-DEDV 177 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + EV + L +D+ + ++ E IR+G+++ I+G NAGKS+L NALA+++ Sbjct: 178 PVDVTPEVRGLLERLISDLKREVDGSRVAERIRDGFEVAIIGAPNAGKSTLLNALAQREA 237 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AI +++ GTTRDV+ + ++L G V + DTAG+RET D VE GI R ADL + Sbjct: 238 AITSEVAGTTRDVIEVRMNLGGLAVTLLDTAGLRETHDPVEALGIDRALTRARAADLRIF 297 Query: 305 LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKS-ILS 363 L + S + + D + + K+D T +S TG+G++EL+ ++ +L+ Sbjct: 298 LLD-QSGEVVGLEPEADDLIVQGKADTRLTRGLS----VSGLTGDGIQELVEALQDRLLA 352 Query: 364 NKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLASVSLGKITG 421 F + +RH + + +R +E A L + ++ AE+LRLA +L + G Sbjct: 353 RTAGAGSF---TRERHRLAMERAIRAMESAHVQLMQGVPHPELAAEDLRLALRALDSLVG 409 Query: 422 CVDVEQLLDIIFSKFCIGK 440 VDVE LL IFS FCIGK Sbjct: 410 RVDVEALLGEIFSSFCIGK 428 >gi|163737994|ref|ZP_02145410.1| tRNA modification GTPase TrmE [Phaeobacter gallaeciensis BS107] gi|161388610|gb|EDQ12963.1| tRNA modification GTPase TrmE [Phaeobacter gallaeciensis BS107] Length = 430 Score = 280 bits (717), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 172/437 (39%), Positives = 248/437 (56%), Gaps = 10/437 (2%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TIFA+++ + +S+IRLSGP I P P + LR G +D+ L Sbjct: 2 DTIFALASAQGKAGVSVIRLSGPKAISTASVISGGDLPRPGRV-LRVLSDCSGARIDEAL 60 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 L+ F P SFTGED+ EF VHG +VV+ +L+ L + ++RL++PGEF+RRA ENGK+DL Sbjct: 61 LLTFTGPNSFTGEDTVEFQVHGSTSVVSAMLDLLGQFEDVRLSDPGEFTRRALENGKLDL 120 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 + E+LADLI +ETE QR + ++G L+ L +W L S IE +DF+ +EDV Sbjct: 121 SQVEALADLIDAETEAQRVQAQAVLAGGLADLAERWRKDLIRAASLIEVTIDFA-DEDVP 179 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 +KEV + + D+ I+ K+ E IR+G+++ I+G N GKS+L NALA ++ A Sbjct: 180 VDVTKEVKELLAGVTADLEPQIAGVKMAERIRSGFEVAIIGAPNVGKSTLLNALAGREAA 239 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 I ++ GTTRDV+ + +DL G V + DTAG+RETDD VE GIK E ADL + L Sbjct: 240 ITSEYAGTTRDVIEVRMDLAGLPVTLLDTAGLRETDDHVEGIGIKMAKERAEKADLRVFL 299 Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365 E + I + D I + K+DL + +S TG+G++ LI I +L N+ Sbjct: 300 TE--DRTAIDIDISEDDIVVAPKADLVGDGVPQ--KAVSGKTGQGIDMLIADITKVLRNR 355 Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LNEKDCGLDIIAENLRLASVSLGKITGCV 423 K+ I + RH + L+ A L D+ AE++R A SL + G V Sbjct: 356 AGKV--GIATRARHRETMKTAYDRLQSAQDVLRYGPEFYDVAAEDMRSAIRSLEMLVGRV 413 Query: 424 DVEQLLDIIFSKFCIGK 440 VE LLD IFS FC+GK Sbjct: 414 GVENLLDEIFSSFCLGK 430 >gi|167648978|ref|YP_001686641.1| tRNA modification GTPase TrmE [Caulobacter sp. K31] gi|189036195|sp|B0T6E0|MNME_CAUSK RecName: Full=tRNA modification GTPase mnmE gi|167351408|gb|ABZ74143.1| tRNA modification GTPase TrmE [Caulobacter sp. K31] Length = 447 Score = 280 bits (716), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 163/434 (37%), Positives = 249/434 (57%), Gaps = 24/434 (5%) Query: 24 RLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEF 83 R+SG + + P PR+A LR DG LD L++ F P S+TGED+AEF Sbjct: 21 RISGARSADIVRGLAGDL-PKPRRAVLRQLT-RDGVALDDALVLWFQGPASYTGEDAAEF 78 Query: 84 HVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQR 143 HVHGG AVV +LE LA LRLA PGEF+RRAFENGK+DL +AE +ADLI +ETE QR Sbjct: 79 HVHGGRAVVEAVLEALA-AEGLRLAEPGEFTRRAFENGKLDLTQAEGVADLIDAETEAQR 137 Query: 144 RLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDI 203 R ++ + G LS Y W L + +EA +DF +EE ++ +++ + L+ +I Sbjct: 138 RQALGQLGGALSQRYEAWRGLLVQALAMLEAAVDFPDEELPEDVAAR-ARPGLEALEAEI 196 Query: 204 SSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD 263 + + G +R+GY+I ++G NAGKS+L NAL ++D AIVT PGTTRD++ + L Sbjct: 197 GAALVDASRGRRVRDGYRIALVGAPNAGKSTLLNALVERDAAIVTSTPGTTRDIIEVPLT 256 Query: 264 LEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE-------------INS 310 L GY ++DTAG+R+T+D +E EG++R ADL L + + + Sbjct: 257 LGGYKTLLADTAGLRKTEDTIEAEGVRRARAWAAGADLRLWVIDAAMFHVKQDDELAVIQ 316 Query: 311 KKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI--SSFTGEGLEELINKIKSILSNKFKK 368 + + + ID + G ++L +T++E+ ++ ++ G E + + + + Sbjct: 317 RGDWAVINKIDLVDAGRLAELRATFSEQGLKVVELAARKPGGAEPARAALSTHVIDALSG 376 Query: 369 LPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI--IAENLRLASVSLGKITGCVDVE 426 F + RH L++ YL+ A D GL++ +AE++RLA+ +L +ITG +D E Sbjct: 377 AEFPAATRIRHAESLTEARTYLQRAL---SDVGLEVELVAEDVRLAARALSRITGRIDPE 433 Query: 427 QLLDIIFSKFCIGK 440 +LD +FS FCIGK Sbjct: 434 DVLDRVFSSFCIGK 447 >gi|144899662|emb|CAM76526.1| thiophene and furan oxidation protein ThdF [Magnetospirillum gryphiswaldense MSR-1] Length = 435 Score = 280 bits (716), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 164/441 (37%), Positives = 264/441 (59%), Gaps = 17/441 (3%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKAS-LRYFFGLDGRILDKGL 65 TIFA+++ +++ RLSGP+ + + K+ P PR A+ +R G G +D GL Sbjct: 5 TIFALASAPGRGGVAVFRLSGPASADILHSLTGKR-PQPRLATRVRVRHG--GEDIDDGL 61 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + FP+P SFTGE+ E H+HGG AV + + L ++ LR A GEFSRRAF N K+DL Sbjct: 62 ALYFPAPHSFTGEEVVELHLHGGRAVAAALSQALLEL-GLRPAEAGEFSRRAFLNDKLDL 120 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 AE++ADL+ +ET QRR +++ + G L++L W L + EA +DFS+E + Sbjct: 121 TRAEAIADLVDAETAAQRRQALQQLDGGLAALVEGWRQDLIRALALTEAIIDFSDE-GIG 179 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 + ++VL + L D+ + +G+ E +R+G I ILG NAGKSSL N +A ++VA Sbjct: 180 DDLVEDVLGQVRALMADMRAKAREGQRRERLRDGIHIAILGAPNAGKSSLMNRIAGREVA 239 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IV+ GTTRDV+ LDL G+ V ++DTAG+RE + +E EGI R E+ADL +L+ Sbjct: 240 IVSAKAGTTRDVIETHLDLHGWPVVLADTAGLREAAEDIEAEGIARALARAESADLKMLV 299 Query: 306 KEIN--SKKEISFPKNID--FIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSI 361 + + +++ ID I + K+D+ + + ++S+ TG GL+ L+ +++S Sbjct: 300 FDASLLPERDAQTQAMIDEASIVVFNKADMANPVDSDAGIMVSARTGLGLDALLARLESE 359 Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG--LDIIAENLRLASVSLGKI 419 ++++F + RH + + +A+L D +++ AE+LR A+ ++G+I Sbjct: 360 VADRFAVSAEPALTRARHRAAVEEC-----LAALARFDPAKPVELAAEDLRQAAQAIGRI 414 Query: 420 TGCVDVEQLLDIIFSKFCIGK 440 TG VDVE+LLD++F++FCIGK Sbjct: 415 TGRVDVEELLDVVFAEFCIGK 435 >gi|56552884|ref|YP_163723.1| tRNA modification GTPase TrmE [Zymomonas mobilis subsp. mobilis ZM4] gi|81820837|sp|Q5NKZ8|MNME_ZYMMO RecName: Full=tRNA modification GTPase mnmE gi|56544458|gb|AAV90612.1| tRNA modification GTPase TrmE [Zymomonas mobilis subsp. mobilis ZM4] Length = 434 Score = 280 bits (716), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 167/444 (37%), Positives = 260/444 (58%), Gaps = 20/444 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD-GRILDKG 64 +TIFA+S+G P+ I++IR+SG + + +KK P R+A LR + D G LD+ Sbjct: 2 KTIFALSSGRPPAGIAVIRISGSAAADTACLLTRKKIPEARRAVLRNLYDPDSGEQLDQS 61 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 LL+ P+P++ TGED E HVHGG AV++ +L+ L K+P+LR A GEF+RRAFENG I Sbjct: 62 LLLWLPAPKTVTGEDLLELHVHGGRAVIDAVLKTLEKLPDLRPAEAGEFTRRAFENGVIS 121 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L EAE L DL+++ET QRR ++ G L W D+L + IEA DF+E+ + Sbjct: 122 LHEAEGLGDLLTAETASQRRAALMMSGGALGRQISAWQDRLLALSGQIEASFDFAEDIEE 181 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGK------LGEIIRNGYKIVILGHSNAGKSSLFNA 238 S++ L +K+ I++ I++ + E +R+G ++V+ G NAGKS+L NA Sbjct: 182 DETESRQHLA---VMKDKIAALIAEHRQFENRPTMERLRDGLRVVLAGRPNAGKSTLINA 238 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L +D+AI I GTTRDV+ + L+G ++ SDTAG+ E+DD++EK GI+R +E Sbjct: 239 LTGQDIAITAPIAGTTRDVIEVSFALKGIPMRFSDTAGLHESDDLIEKAGIERAQRAIEE 298 Query: 299 ADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTY--TEEYDHLISSFTGEGLEELIN 356 AD++L L + E + + + + + + DL + E+ D +S+ TGEG++ L Sbjct: 299 ADILLWL----GQAEEAPKTDGEVLVLYPQIDLPERHPIPEKIDIAVSAVTGEGIDRLQE 354 Query: 357 KIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSL 416 K+ I K + ++R + + L +A L+ +D + IIAE +R A Sbjct: 355 KLVEI-GKKILPKEDEVTLNRRQRQLVKEAADSLALA-LDAED--MLIIAEAIRQACRCY 410 Query: 417 GKITGCVDVEQLLDIIFSKFCIGK 440 ++TG VE +LD +FS+FCIGK Sbjct: 411 DRLTGKAGVENMLDNLFSRFCIGK 434 >gi|88705405|ref|ZP_01103116.1| tRNA modification GTPase trmE [Congregibacter litoralis KT71] gi|88700495|gb|EAQ97603.1| tRNA modification GTPase trmE [Congregibacter litoralis KT71] Length = 457 Score = 280 bits (716), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 179/462 (38%), Positives = 264/462 (57%), Gaps = 30/462 (6%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-DGR 59 M + +TI A++TG+ + IIRLSGP F I +K KA +F + DG+ Sbjct: 4 MVGDSDTIVAIATGSGAGGVGIIRLSGPDAFT----IARKMTATDAKARQAHFVSIVDGQ 59 Query: 60 --ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 +LD+GLL+ FP P SFTGED AE H HGG ++ +L E R A PGEFS+RA Sbjct: 60 NAVLDQGLLLQFPGPHSFTGEDVAELHCHGGPVLLRTVLRECI-YHGARQATPGEFSQRA 118 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F N KIDL++AE++ADLISS TE R + ++G S +++L +R FIEA +D Sbjct: 119 FLNNKIDLVQAEAIADLISSSTEAAARSASRSLTGSFSVQVDALLEQLIRLRVFIEAAID 178 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 F EEE + + +VL + L + I++ + + G +R+G K+VI G NAGKSSL N Sbjct: 179 FPEEE-IDFIAESDVLERLETLASSINALLKSARRGRTLRDGLKLVIAGAPNAGKSSLLN 237 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 LA++D AIVTDIPGTTRD+L + ++G + I DTAG+R++ D +E+EGI+R E++ Sbjct: 238 QLAEQDSAIVTDIPGTTRDLLREHIQIDGLPLHIVDTAGLRDSGDAIEQEGIRRARSEMQ 297 Query: 298 NADLILLLKE------------INSKKEISFPKNIDFIFIGTKSDLY---STYT--EEYD 340 +AD ILL+ + + S E P+ + I K D+ +T+T + + Sbjct: 298 SADHILLVVDNSGESALLDAATLVSHYEGDLPEAVPITLIRNKCDIQNIPATFTTGDINE 357 Query: 341 HLISSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399 +S+ G+G++ L + + + FS + +RH+ L + +L L KD Sbjct: 358 ICLSALRGDGIDLLRRHLLTTAGIADTESSDFS--ARERHVLALEECAGHLAQGLLQLKD 415 Query: 400 CG-LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G ++IAE+LR A SLG ITG ++LL IF FCIGK Sbjct: 416 HGAAELIAEDLRYAQDSLGSITGSFSSDELLGEIFGSFCIGK 457 >gi|85706893|ref|ZP_01037983.1| tRNA modification GTPase [Roseovarius sp. 217] gi|85668504|gb|EAQ23375.1| tRNA modification GTPase [Roseovarius sp. 217] Length = 428 Score = 279 bits (714), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 164/437 (37%), Positives = 250/437 (57%), Gaps = 12/437 (2%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI+A+ST + +++IR+SGP + C +C P PR+A LR G LD+ L Sbjct: 2 DTIYALSTAQGKAGVAVIRVSGPLAAEACRRLCGDV-PEPRRAVLRVLRDEGGERLDQAL 60 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 +++F ESFTGE +AEF +HG +AVV +L +L ++ LR A GEF+RRA ENG++DL Sbjct: 61 VLIFAENESFTGESTAEFQLHGSVAVVASVLADLGRIDGLRPAEAGEFTRRALENGRLDL 120 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 + E LADLI +ETE QR+ ++ SG L W L + +EA +DF++EE V Sbjct: 121 AQVEGLADLIEAETEAQRKQALRVFSGALGERCEGWRRSLIRAVALLEATIDFADEE-VP 179 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S EV I + + + I+ + E IR G+++ I+G N GKS+L NALA +D A Sbjct: 180 VDVSPEVTGLIQGVIQGLEAEIAGVSVSERIRTGFEVAIVGAPNVGKSTLLNALAGRDAA 239 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 I ++ GTTRDV+ + +DL G V + DTAG+RET D VE GI R ADL + L Sbjct: 240 ITSEFAGTTRDVIEVRMDLAGLPVTLLDTAGLRETTDAVESIGIARARARAAQADLRVFL 299 Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365 I + F D I + K+D+ +S TG GL EL+++I ++L Sbjct: 300 --IEDGGDFEFVPEADDIVVRAKADISGDLM----GAVSGKTGAGLSELVDRIAAVLGA- 352 Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLASVSLGKITGCV 423 + + + + +RH + + ++ L+++ +L + +I AE LR+A +L + G + Sbjct: 353 -RAMGAGLATRERHRQAMVRGLKALQVSLDTLPLGEVMAEIAAEELRVAIRALDSLVGRI 411 Query: 424 DVEQLLDIIFSKFCIGK 440 DVE +LD IF+ FC+GK Sbjct: 412 DVETVLDEIFASFCLGK 428 >gi|251791873|ref|YP_003006593.1| tRNA modification GTPase TrmE [Aggregatibacter aphrophilus NJ8700] gi|247533260|gb|ACS96506.1| tRNA modification GTPase TrmE [Aggregatibacter aphrophilus NJ8700] Length = 451 Score = 279 bits (714), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 175/456 (38%), Positives = 258/456 (56%), Gaps = 26/456 (5%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64 KETI A +T I I+R+SGP+ V + + K P PR A F DG +LD+G Sbjct: 2 KETIVAQATAPGRGGIGILRVSGPNAIDVAQAVLGKC-PKPRMADYLPFKDEDGTLLDQG 60 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 + + F SP SFTGED E HGG V++ +L+ + ++ +RLA PGEFS +AF N K+D Sbjct: 61 IALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILRIDGIRLARPGEFSEQAFLNDKLD 120 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED- 183 L +AE++ADLI + +E R +++ + GE S+ Q +D + ++R+++EA +DF +EE Sbjct: 121 LAQAEAIADLIDASSEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEAAIDFPDEEID 180 Query: 184 -VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 + + + LNDI+ + + + QG I++ G K+VI G NAGKSSL NALA + Sbjct: 181 FLADGKIESYLNDIIAQLDGVRAEAKQGS---ILQEGMKVVIAGRPNAGKSSLLNALAGR 237 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 + AIVTDI GTTRDVL + L+G + I DTAG+RE D VE+ GI R + E+E AD I Sbjct: 238 EAAIVTDIAGTTRDVLREHIHLDGMPLHIIDTAGLREATDEVERIGISRAWSEIEQADRI 297 Query: 303 LL----------LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------ISSF 346 LL L ++ S+ P +I I K+DL Y+ +S+ Sbjct: 298 LLMLDGSDTEQDLSKVRSEFLAKLPNHIPVTIIRNKADLTGEQEGLYEEQGYTVVSLSAK 357 Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDI 404 T G+E L N +K + + + + +RHL L Q ++L++ L E G ++ Sbjct: 358 TQRGVEILRNHLKQSMGYQ-TGMEGGFLARRRHLEALEQAAQHLQIGHVQLTEFHAG-EL 415 Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +AE LRL +L +ITG + LL IFS FCIGK Sbjct: 416 LAEELRLVQSALSEITGQFTSDDLLTNIFSSFCIGK 451 >gi|312115383|ref|YP_004012979.1| tRNA modification GTPase TrmE [Rhodomicrobium vannielii ATCC 17100] gi|311220512|gb|ADP71880.1| tRNA modification GTPase TrmE [Rhodomicrobium vannielii ATCC 17100] Length = 460 Score = 279 bits (713), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 168/465 (36%), Positives = 257/465 (55%), Gaps = 37/465 (7%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR-ILDKGL 65 TI+A+S+ + I++IR+SG + + +C + P PR +S R R +LD+ + Sbjct: 2 TIYALSSAPGRAGIAVIRISGRASRKTLYALCNGRLPAPRVSSFRRLRHPTSREMLDEAM 61 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 ++ P P +FTGED AE +VHGG AVV ++ LA + LRLA PGEF+RRAF NGK+DL Sbjct: 62 VLWLPGPANFTGEDMAELYVHGGRAVVTAVMNALADV-GLRLAEPGEFTRRAFGNGKLDL 120 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 EAE LADLI+++TE+QRR ++ SG + + Y +W L +++EA LDFS+E D+ Sbjct: 121 TEAEGLADLINADTEIQRRQALAQHSGAMRARYEKWRRTLLKAMAYVEASLDFSDEADIA 180 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 + + KE + + L ++ ++ G+ GEI+R G + I+G N GKSSL NALA ++ A Sbjct: 181 DGAFKEAVPEARLLAAELERALADGRRGEILREGISVAIVGEPNVGKSSLLNALAGREAA 240 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR------------TF 293 IV D PGTTRDV+ + LDL+GY + DTAGIRE VE+EG++R Sbjct: 241 IVYDEPGTTRDVIEVSLDLDGYPFVLRDTAGIREAASPVEQEGVRRALAAAEAADVVLAM 300 Query: 294 LEVENADLILLLKEINS---------KKEISFPKNIDFIFIGTKSDLY-----STYTEEY 339 ++ D L E + ++ + I + K DL ++ E Sbjct: 301 VDGSCGDAGALPAEGEAGGTPSGEGIAAAVTSSSGVKLIVV-NKVDLAPPPAPGSFGPEA 359 Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT----VRYLEMASL 395 + IS+ T GL+ L + S + + RH + + V +L+ A Sbjct: 360 IY-ISAKTCLGLDALKAALVRFASESYGSGEAPTITRVRHRQEIGRARAALVAFLDGAEA 418 Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E ++ AE+LR A+ +LG++TG +DVE +L IF +FC+GK Sbjct: 419 GEAP---ELAAEHLREAADALGRLTGRLDVEDVLGQIFGEFCVGK 460 >gi|260753419|ref|YP_003226312.1| tRNA modification GTPase TrmE [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552782|gb|ACV75728.1| tRNA modification GTPase TrmE [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 434 Score = 279 bits (713), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 166/444 (37%), Positives = 260/444 (58%), Gaps = 20/444 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD-GRILDKG 64 +TIFA+S+G P+ I++IR+SG + + +KK P R+A LR + D G LD+ Sbjct: 2 KTIFALSSGRPPAGIAVIRISGSAAADTACLLTRKKIPEARRAVLRNLYDPDSGEQLDQS 61 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 LL+ P+P++ TGED E HVHGG AV++ +L+ L K+P+LR A GEF+RRAFENG I Sbjct: 62 LLLWLPAPKTVTGEDLLELHVHGGRAVIDAVLKTLEKLPDLRPAEAGEFTRRAFENGVIS 121 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L EAE L DL+++ET QRR ++ G L W D+L + IEA DF+E+ + Sbjct: 122 LHEAEGLGDLLTAETASQRRAALMMSGGALGQQISAWQDRLLALSGQIEASFDFAEDIEE 181 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGK------LGEIIRNGYKIVILGHSNAGKSSLFNA 238 S++ L +K+ I++ I++ + E +R+G ++V+ G NAGKS+L NA Sbjct: 182 DETESRQHLA---VMKDKIAALIAEHRQFENRPTMERLRDGLRVVLAGRPNAGKSTLINA 238 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L +D+AI I GTTRDV+ + L+G ++ SDTAG+ E+DD++EK GI+R +E Sbjct: 239 LTGQDIAITAPIAGTTRDVIEVSFALKGIPMRFSDTAGLHESDDLIEKAGIERAQRAIEE 298 Query: 299 ADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTY--TEEYDHLISSFTGEGLEELIN 356 AD++L L + E + + + + + + DL + E+ D +S+ TGEG++ L Sbjct: 299 ADILLWL----GQAEEAPKTDGEVLVLYPQIDLPERHPIPEKIDIAVSAVTGEGIDRLQE 354 Query: 357 KIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSL 416 K+ I K + ++R + + L +A L+ +D + IIAE +R + Sbjct: 355 KLVEI-GKKILPKEDEVTLNRRQRQLVKEAADSLALA-LDAED--MLIIAEAIRQSCRCY 410 Query: 417 GKITGCVDVEQLLDIIFSKFCIGK 440 ++TG VE +LD +FS+FCIGK Sbjct: 411 DRLTGKAGVENMLDNLFSRFCIGK 434 >gi|269958310|ref|YP_003328097.1| tRNA modification GTPase TrmE [Anaplasma centrale str. Israel] gi|269848139|gb|ACZ48783.1| tRNA modification GTPase TrmE [Anaplasma centrale str. Israel] Length = 443 Score = 278 bits (712), Expect = 9e-73, Method: Compositional matrix adjust. Identities = 168/446 (37%), Positives = 255/446 (57%), Gaps = 18/446 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TIFA+ST S +++IR+SG + + + + K+ PR A+ + + + +D+ + Sbjct: 5 DTIFALSTPMGKSGVAVIRISGHNALKSMQLLGVKEPVRPRVATCKTLYDKKRQPIDQAV 64 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 ++ FP P SFTGED E VHG +AV+ + EEL + R+A PGEFS RAF NGKIDL Sbjct: 65 VLYFPGPGSFTGEDVVELQVHGSLAVIRLLFEELQTV--FRIAEPGEFSLRAFLNGKIDL 122 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 AE +ADL++SETE Q R + SG L LY +W L I S +EA +DF ++ Q Sbjct: 123 TRAEGIADLVNSETEAQLRQAFAQSSGFLERLYEEWRSSLVDILSDLEAYIDFPDDVSPQ 182 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S V + + L N + H+ G GE +R+G ++ ILG N GKS+LFN LA++D+A Sbjct: 183 ILRS--VHDRVKELHNSLERHLDDGHRGERLRHGMRVAILGKPNVGKSTLFNHLARRDMA 240 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IV++ PGTTRDVL +D+ GY I DTAGIRE+ D VE+EGI R E AD+ ++L Sbjct: 241 IVSEYPGTTRDVLEAHVDIGGYPFIIVDTAGIRESTDFVEREGIMRAKSEAATADIRIML 300 Query: 306 ------KEINSKKEISFPKNIDFIFIGTKSD-----LYSTYTEEYDHLISSFTGEGLEEL 354 + + + I + I++ +K+D + +L+S T G++ L Sbjct: 301 FPHSEADNLGAHEAIEGGDDGKTIYVLSKADNAKEGETRIIEGKQFYLVSVHTNLGVDSL 360 Query: 355 INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASV 414 ++ +K + F K + + +RH HL + + + + +I+AE LRLA+ Sbjct: 361 LSALKERAIDGFPKSGDVLITSQRHRGHLQSAAKVISDIT---DEMPAEIVAEYLRLATK 417 Query: 415 SLGKITGCVDVEQLLDIIFSKFCIGK 440 +GK+TG V + +LD IF +FCIGK Sbjct: 418 EIGKVTGAVYGDDILDNIFKRFCIGK 443 >gi|241762347|ref|ZP_04760427.1| tRNA modification GTPase TrmE [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241373141|gb|EER62780.1| tRNA modification GTPase TrmE [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 434 Score = 278 bits (711), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 166/444 (37%), Positives = 259/444 (58%), Gaps = 20/444 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD-GRILDKG 64 +TIFA+S+G P+ I++IR+SG + + +KK P R+A LR + D G LD+ Sbjct: 2 KTIFALSSGRPPAGIAVIRISGSAAADTACLLTRKKIPEARRAVLRNLYDPDSGEQLDQS 61 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 LL+ P+P++ TGED E HVHGG AV++ +L+ L K+P+LR A GEF+RRAFENG I Sbjct: 62 LLLWLPAPKTVTGEDLLELHVHGGRAVIDAVLKTLEKLPDLRPAEAGEFTRRAFENGVIS 121 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L EAE L DL+++ET QRR ++ G L W D+L + IEA DF+E+ + Sbjct: 122 LHEAEGLGDLLTAETASQRRAALMMSGGALGRQISAWQDRLLALSGQIEASFDFAEDIEE 181 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGK------LGEIIRNGYKIVILGHSNAGKSSLFNA 238 S++ L +K+ I++ I++ + E +R+G ++V+ G NAGKS+L NA Sbjct: 182 DETESRQHLA---VMKDKIAALIAEHRQFENRPTMERLRDGLRVVLAGRPNAGKSTLINA 238 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L +D+AI I GTTRDV+ + L+G ++ SDTAG+ E+DD++EK GI+R +E Sbjct: 239 LTGQDIAITAPIAGTTRDVIEVSFALKGIPMRFSDTAGLHESDDLIEKAGIERAQRAIEE 298 Query: 299 ADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTY--TEEYDHLISSFTGEGLEELIN 356 AD++L L + E + + + + + + DL + E+ D +S+ TGEG++ L Sbjct: 299 ADILLWL----GQAEEAPKTDGEVLVLYPQIDLPKRHPIPEKIDIAVSAVTGEGIDRLQE 354 Query: 357 KIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSL 416 K+ I K + ++R + + L +A L +D + I+AE +R A Sbjct: 355 KLVEI-GKKILPKEDEVTLNRRQRQLVKEAADSLALA-LEAED--MLIMAEAIRQACRCY 410 Query: 417 GKITGCVDVEQLLDIIFSKFCIGK 440 ++TG VE +LD +FS+FCIGK Sbjct: 411 DRLTGKAGVENMLDNLFSRFCIGK 434 >gi|222475664|ref|YP_002564081.1| thiophene and furan oxidation protein (thdF) [Anaplasma marginale str. Florida] gi|255003656|ref|ZP_05278620.1| tRNA modification GTPase TrmE [Anaplasma marginale str. Puerto Rico] gi|222419802|gb|ACM49825.1| thiophene and furan oxidation protein (thdF) [Anaplasma marginale str. Florida] Length = 443 Score = 278 bits (710), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 169/448 (37%), Positives = 256/448 (57%), Gaps = 22/448 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TIFA+ST S +++IR+SG + + + + K+ PR A+ + + + +D+ + Sbjct: 5 DTIFALSTPMGKSGVAVIRISGHNALKSMQLLGVKEPVRPRVATCKTLYDKKRQPIDQAV 64 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 ++ FP P SFTGED E VHG +AV+ + EEL + R+A PGEFS RAF NGKIDL Sbjct: 65 VLYFPGPGSFTGEDVVELQVHGSLAVIRLLFEELQTV--FRIAEPGEFSLRAFLNGKIDL 122 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 AE +ADL++SETE Q R + SG L LY +W L I S +EA +DF ++ Q Sbjct: 123 TRAEGIADLVNSETEAQLRQAFAQSSGFLERLYEEWRSSLVDILSDLEAYIDFPDDVSPQ 182 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S V + + L N + H+ G GE +R+G ++ ILG N GKS+LFN LA++D+A Sbjct: 183 ILRS--VHDRVKELHNSLERHLDDGHRGERLRHGMRVAILGKPNVGKSTLFNHLARRDMA 240 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IV++ PGTTRDVL +D+ GY + DTAGIRE+ D VE+EGI R E AD+ ++L Sbjct: 241 IVSEYPGTTRDVLEAHVDIGGYPFIVVDTAGIRESTDFVEREGIMRAKSEAATADIRIML 300 Query: 306 KEINSKKEISFPKNID------FIFIGTKSDLYSTYTEEYD-------HLISSFTGEGLE 352 + + + I+ I++ +K+D S E +L+S T G++ Sbjct: 301 FPHSEAGNLGVHEAIEGGDDGKTIYVLSKAD--SAKEGETRIIEGKQFYLVSVHTNLGVD 358 Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLA 412 L++ +K + F K + + +RH HL + + + + +I+AE LRLA Sbjct: 359 SLLSALKERAIDGFPKSGDVLITSQRHRGHLQSAAKVISDIT---DEMPAEIVAEYLRLA 415 Query: 413 SVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + +GK+TG V + +LD IF +FCIGK Sbjct: 416 TKEIGKVTGAVYGDDILDNIFKRFCIGK 443 >gi|189184774|ref|YP_001938559.1| tRNA modification GTPase TrmE [Orientia tsutsugamushi str. Ikeda] gi|189181545|dbj|BAG41325.1| tRNA modification GTP-binding protein ThdF (TrmE) [Orientia tsutsugamushi str. Ikeda] Length = 447 Score = 277 bits (709), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 171/453 (37%), Positives = 259/453 (57%), Gaps = 27/453 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG-LDGRILDKG 64 +TIFA S+ + +++ R+SG + E +C K PRK R + +++DK Sbjct: 4 KTIFAQSSAKGKAGVAVFRISGGLSLLIVERLCGKFNIVPRKVYYRTIRCYITSQVIDKA 63 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 L++ F SFTGED E H HG +AV + + + +RLA PGEF++RAF NGK+D Sbjct: 64 LIVYFQGEYSFTGEDVVEIHTHGSVAVAKMLTRSILECDGVRLAEPGEFAKRAFLNGKMD 123 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L AE L DLI SET MQ + ++ M GEL LY W L I SF+E +DF +EE Sbjct: 124 LTMAEGLVDLIESETLMQHKQAIRQMGGELEKLYSHWRGMLIKILSFVEGYIDFPDEEIP 183 Query: 185 QNF--SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 Q+ +K ++N+ L +IS+H+ + GE++R+G + I G +N GKSSL N L + Sbjct: 184 QSVLREAKSIINN---LTQEISNHLGDARKGEVLRHGIVLAITGETNTGKSSLLNYLTMR 240 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 + AIV+DIPGTTRDV+ LD+ GY + + DTAGIRE+DD +E+EGIKR+ L +N+D+ Sbjct: 241 EAAIVSDIPGTTRDVIEAHLDIGGYPIIVRDTAGIRESDDPIEQEGIKRSLLAFKNSDIR 300 Query: 303 LLLKEINSKKEIS-----FPKNIDFIFIGTKSDLYSTYTEEYDHL--------ISSFTGE 349 +L+ + + ++ ++ I + K DL + Y + L IS Sbjct: 301 ILMIDATNMNSVNQTIAHLLNDVYTILVINKIDLVN-YRYDGSRLPCDKPIVAISLLKQV 359 Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHKRHLYH--LSQTVRYLEMASLNEKDCGLDIIAE 407 GL+ L+ +I S + K P ++P+ R Y L+Q + L++ +L E D L + AE Sbjct: 360 GLDRLMAEIVS-YAEKIAD-PGNVPAITRERYRNSLNQALELLQLVNL-END--LVLAAE 414 Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +LR+A L ITG + ++ +L IF+ FCIGK Sbjct: 415 DLRMAIRYLEHITGKIKIDDILAEIFASFCIGK 447 >gi|254476302|ref|ZP_05089688.1| tRNA modification GTPase TrmE [Ruegeria sp. R11] gi|214030545|gb|EEB71380.1| tRNA modification GTPase TrmE [Ruegeria sp. R11] Length = 428 Score = 277 bits (709), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 171/437 (39%), Positives = 247/437 (56%), Gaps = 12/437 (2%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TIFA+++ + +S+IRLSGP I P +A LR G +D+ L Sbjct: 2 DTIFALASAQGKAGVSVIRLSGPQALPTASKISGGDLPTAGRA-LRVLSDQSGERIDEAL 60 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 ++ F P SFTGED+ EF VHG +VV+ +L LA+ +RLA+PGEF+RRA ENGK+DL Sbjct: 61 VLTFAGPNSFTGEDTVEFQVHGSTSVVSAMLALLAEFDGVRLADPGEFTRRALENGKLDL 120 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 + E+LADLI +ETE QR + ++G L +L +W L S IE +DF++EE V Sbjct: 121 SQVEALADLIDAETEAQRIQAQTVLAGGLGALAERWRVDLIRAASLIEVTIDFADEE-VP 179 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 + EV + + +D+ I+ ++ E IR+G+++ I+G N GKS+L NALA ++ A Sbjct: 180 VDVTDEVTALLAGVVSDLQPQITGVQIAERIRSGFEVAIVGAPNVGKSTLLNALAGREAA 239 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 I ++ GTTRDV+ + +DL G V + DTAG+RETDD VE GI+ E ADL + L Sbjct: 240 ITSEYAGTTRDVIEVRMDLAGLPVTLLDTAGLRETDDHVEGIGIELAKKRAETADLRVFL 299 Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365 + +I P I + K+DL S + IS TG+G+++L+ +I IL ++ Sbjct: 300 A--GDRNDIDLPIRDQDIVLKPKADLLS----DVPGAISGKTGQGVDDLVREIGRILKDR 353 Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LNEKDCGLDIIAENLRLASVSLGKITGCV 423 K I + RH + L A L DI AE++R A SL + G V Sbjct: 354 AGK--AGIATRARHRDAMKAASDRLMSAQEILKRGPEFYDIAAEDMRSAIRSLEMLVGRV 411 Query: 424 DVEQLLDIIFSKFCIGK 440 VE LLD IFS FC+GK Sbjct: 412 GVENLLDEIFSSFCLGK 428 >gi|261868617|ref|YP_003256539.1| tRNA modification GTPase TrmE [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413949|gb|ACX83320.1| tRNA modification GTPase TrmE [Aggregatibacter actinomycetemcomitans D11S-1] Length = 451 Score = 277 bits (709), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 171/457 (37%), Positives = 257/457 (56%), Gaps = 28/457 (6%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64 KETI A +T I I+R+SGP +V + + K P PR A F DG +LD+G Sbjct: 2 KETIVAQATAPGRGGIGILRVSGPKAIEVAQAVLGKC-PKPRMADYLSFKEADGTVLDQG 60 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 + + F P SFTGED E HGG V++ +L+ + ++ +RLA PGEFS +AF N K+D Sbjct: 61 IALYFKGPNSFTGEDVLELQGHGGQVVLDLLLKRILRIEGIRLARPGEFSEQAFLNDKLD 120 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ADLI + +E R +++ + GE S+ Q +D + ++R+++EA +DF +EE + Sbjct: 121 LAQAEAIADLIDASSEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEAAIDFPDEE-I 179 Query: 185 QNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 + ++ LNDI+ + + + QG I+R G K+VI G NAGKSSL N LA Sbjct: 180 DFLADGKIEGHLNDIIAQLDKVRAEAKQGS---ILREGMKVVIAGRPNAGKSSLLNTLAG 236 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 ++ AIVTDI GTTRDVL + L+G + I DTAG+R+ D VE+ GI R + E+E AD Sbjct: 237 REAAIVTDIAGTTRDVLREHIHLDGMPLHIIDTAGLRDATDEVERIGISRAWHEIEQADR 296 Query: 302 ILL----------LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH------LISS 345 ILL L ++ S+ P NI I K+DL Y+ +S+ Sbjct: 297 ILLMLDSSDTEQDLAKVRSEFLAKLPNNIPLTIIRNKADLSGEAERLYEEDGYTVVNLSA 356 Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLD 403 T +G++ L + +K + + + + +RHL L R+L+M L + G + Sbjct: 357 KTQQGVDLLRDHLKQAMGYQ-TGMEGGFLARRRHLEALELAARHLQMGHVQLTQFHAG-E 414 Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++AE LR+ +L +ITG + LL IFS FCIGK Sbjct: 415 LLAEELRMVQSALSEITGQFTSDDLLTNIFSSFCIGK 451 >gi|195111166|ref|XP_002000150.1| GI22686 [Drosophila mojavensis] gi|193916744|gb|EDW15611.1| GI22686 [Drosophila mojavensis] Length = 494 Score = 277 bits (709), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 165/472 (34%), Positives = 263/472 (55%), Gaps = 40/472 (8%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK--PFPRKASLRYFFGLDGR-ILDK 63 TI+++S+G + +S+IR+SGP Q + + P R A L+ F+ + I+D+ Sbjct: 25 TIYSLSSGHVKCGVSVIRVSGPQTKQALRAVVNNSEYEPKQRLAYLKSFYHPTSKEIIDR 84 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 GLL+ FP P SFTGED+ EF VHG +AV++ +L+ L ++P LR A PGEF++RAF GK+ Sbjct: 85 GLLLWFPGPASFTGEDACEFQVHGSLAVISAMLDALGQLPGLRPAQPGEFTKRAFFGGKL 144 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL E E L+DLI +ETE QR+ ++ +G L LY W +L + +EA +DF+E+E Sbjct: 145 DLTEVEGLSDLIHAETEAQRKQALLQSTGTLGRLYDNWRKRLIRCAAHLEAYIDFAEDEQ 204 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 ++ ++ ++ ++ +I +H++ + GE++R+G + VI+G N GKSSL N L ++ Sbjct: 205 IEGGVVLKLTKELKAVQREIRAHLNDQRQGELLRDGVRTVIIGAPNVGKSSLLNLLCQRA 264 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEVENADLI 302 V+IVTD GTTRD++ GY V +DTAG+R+ T D +E EG+ R + +DLI Sbjct: 265 VSIVTDQAGTTRDIIETTHSFGGYPVVFADTAGLRKHTTDAIEMEGMARARQCLAQSDLI 324 Query: 303 LL------LKEINSK-----------KEISFPKNI----DFIFIGTKSDLYSTYTEEYDH 341 LL L++++S +E+ PK + + K+D S EE DH Sbjct: 325 LLLTDAKALRDVDSNESLNGRIDSYLQELDIPKELCRGKRLQLVANKTDTLS--AEEIDH 382 Query: 342 L--------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP--SHKRHLYHLSQTVRYLE 391 L IS + L E + ++ +L P +H R+ L + + ++E Sbjct: 383 LRKLKDVLCISCHKQDNLPEFLGSLEQLLQQLCGTPQAEHPRITHSRYRQQLERCIEHIE 442 Query: 392 MASLNEKD---CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + + K + I A+ LR + + +ITG V E +LD+IF FCIGK Sbjct: 443 IFLRDYKPDVFPDMAIAAQQLRKSVRCIERITGHVSCEDILDVIFKDFCIGK 494 >gi|301753861|ref|XP_002912764.1| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial-like isoform 2 [Ailuropoda melanoleuca] Length = 470 Score = 277 bits (708), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 176/444 (39%), Positives = 252/444 (56%), Gaps = 18/444 (4%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYF-FGLDGRILDKG 64 T+FA+S+G I++IR SGP+ + + P R A LR G LD+ Sbjct: 35 TVFALSSGQGRCGIAVIRTSGPASGHALRSLTAPQDLPPARSACLRLLSHPRSGEPLDRA 94 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 L++ FP P+SFTGED AEFHVHGG AVV+G+L+ L +P LR A GEF+RRAF +GK+ Sbjct: 95 LVLWFPGPQSFTGEDCAEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFAHGKLS 154 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L E E LADLI +ETE QRR ++ + GEL L W LT + +EA +DFSE++++ Sbjct: 155 LTEVEGLADLIHAETEAQRRQALRQLDGELGHLCRAWAKTLTKALAHVEAYIDFSEDDNL 214 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + + V + + L+ +S+H+ + G+ +R+G +V+ G NAGKSSL N L++K V Sbjct: 215 EEGVLERVDSQVRELELALSAHLRDARRGQRLRSGAHVVVAGPPNAGKSSLVNLLSRKPV 274 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 +IV+ PGTTRDVL +DL G+ +SDTAG+RE VE+EG++R D I+ Sbjct: 275 SIVSPEPGTTRDVLETPVDLAGFPALLSDTAGLREGVGPVEQEGVRRARESCNFLDTIVT 334 Query: 305 LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFTGEGLEELINKI 358 + KE S + + KSDL + L+S TGEGL+ L+ + Sbjct: 335 PAGAGNPKENS----QRLLLVLNKSDLLPRGGPDPSPNLPPHLLLSCLTGEGLDGLLEAL 390 Query: 359 KSILSNKFKKLPFSIP--SHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSL 416 + L+ P + P + RH +HL + L KD L + AE LRLA L Sbjct: 391 RKELAEVCGD-PSTGPLLTRARHQHHLQGCLDALGHYK-QTKD--LALAAEALRLARGHL 446 Query: 417 GKITGCVDVEQLLDIIFSKFCIGK 440 G+ITG +++LDIIF FC+GK Sbjct: 447 GRITGGGGTDEILDIIFRDFCVGK 470 >gi|73986024|ref|XP_865647.1| PREDICTED: similar to GTP binding protein 3 (mitochondrial) isoform V isoform 2 [Canis familiaris] Length = 471 Score = 277 bits (708), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 175/444 (39%), Positives = 248/444 (55%), Gaps = 17/444 (3%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLDGR-ILDKG 64 TIFA+S+G I++IR SGP+ + + P R A LR R LD+ Sbjct: 35 TIFALSSGQGRCGIAVIRTSGPASGHALRSLTASRDLPPARSACLRLLSHPHSREPLDRA 94 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 L++ FP P+SFTGED AEFHVHGG AVV+G+L+ L +P LR A GEF+RRAF +GK+ Sbjct: 95 LVLWFPGPQSFTGEDCAEFHVHGGSAVVSGVLQALGSVPGLRPAEAGEFTRRAFAHGKLS 154 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L E E LADLI +ETE QRR ++ + GEL L W LT + +EA +DF E++++ Sbjct: 155 LTEVEGLADLIHAETEAQRRQALRQLDGELGHLCHGWAKTLTKALAHVEAYIDFGEDDNL 214 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + + + + L+ +S+H+ + G+ +R+G IV+ G NAGKSSL N L++K V Sbjct: 215 EEGVLERANSQVRELELALSAHLRDARRGQRLRSGAHIVVTGPPNAGKSSLVNLLSRKPV 274 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 +IV+ PGTTRDVL +DL G+ +SDTAG+RE VE+EG++R D +++ Sbjct: 275 SIVSPEPGTTRDVLETPVDLAGFPALLSDTAGLREGAGPVEQEGVRRARQSRSFLDTVVV 334 Query: 305 LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFTGEGLEELINKI 358 S E S + + KSDL + L+S TGEGL+ L+ + Sbjct: 335 PAGAGSPSENS----QRLLLVLNKSDLLPRGGPDLSPHLPPHLLLSCLTGEGLDGLLEAL 390 Query: 359 KSILSNKFKKLPFSIP--SHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSL 416 + L+ P + RH +HL + L KD L + AE LRLA L Sbjct: 391 RKELAEVCGDPSTGPPLLTRARHQHHLQGCLDALSHYK-QTKD--LALAAEALRLARGHL 447 Query: 417 GKITGCVDVEQLLDIIFSKFCIGK 440 +ITG D E++LDIIF FC+GK Sbjct: 448 ARITGGGDTEEILDIIFRDFCVGK 471 >gi|307172923|gb|EFN64090.1| tRNA modification GTPase GTPBP3, mitochondrial [Camponotus floridanus] Length = 510 Score = 277 bits (708), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 174/468 (37%), Positives = 256/468 (54%), Gaps = 37/468 (7%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR-ILDKGL 65 TI A+S+G ++++RLSG + + + K PR A LR + ++D GL Sbjct: 46 TICALSSGRGKCGVAVVRLSGSRSLEALKRMTNISKLVPRTAFLRKIRDPETEEVIDNGL 105 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + FP P SFTGEDS EFHVHGG A++ +++ L+K+ + A PGEF+RRAF N K+DL Sbjct: 106 CLWFPGPHSFTGEDSVEFHVHGGTAILTRLMQALSKL-QVHPALPGEFTRRAFYNNKLDL 164 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 E E LADLI +ETE QR+ ++ G L LY W L+ + IEA +DF EE++++ Sbjct: 165 TEVEGLADLIEAETECQRKQALLQADGVLHKLYDGWRKVLSESVASIEAYIDFGEEDNIE 224 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 + + + + L D+ H++ G+ GEI+RNG + VI+G N GKSSL N L +++ A Sbjct: 225 SDVVQRAHDALRQLVRDLEEHLADGRRGEILRNGIRTVIVGEPNVGKSSLLNHLVQRNAA 284 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RETDDIVEKEGIKRTFLEVENADLILL 304 IVT + GTTRDV+ + ++ GY V I+DTAGI T DIVE EGI+R ENAD +++ Sbjct: 285 IVTPVAGTTRDVIELSANISGYPVLIADTAGITNNTKDIVEVEGIRRARSYAENADFVIV 344 Query: 305 LKEINSK--KEISFPKNID-------------------FIFIGTKSDLYSTYTEEY---- 339 + + E+++ + FI I K DL + Sbjct: 345 VMDAFKCVISEMTYEDYLRGYLSSLGIYELLTKMGKERFIVIMNKRDLLKAEDKRRLDDV 404 Query: 340 -DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP--SHKRHLYHLSQTVR----YLEM 392 LIS T +G E+L+ + SN + P S +RH HL++ +R Y ++ Sbjct: 405 EAVLISCKTEDGFEDLLQSLTDRFSNICGEPSAENPTISQERHRNHLTRCLRHLRNYFQL 464 Query: 393 ASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + D + I AE + A LG+ITG V ++LDIIF FCIGK Sbjct: 465 CGNEQHD--MAIAAEEIHKAMRELGRITGHVSTNEILDIIFKTFCIGK 510 >gi|296533444|ref|ZP_06896027.1| tRNA modification GTPase TrmE [Roseomonas cervicalis ATCC 49957] gi|296266224|gb|EFH12266.1| tRNA modification GTPase TrmE [Roseomonas cervicalis ATCC 49957] Length = 439 Score = 276 bits (707), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 173/441 (39%), Positives = 257/441 (58%), Gaps = 12/441 (2%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD-GRILDKG 64 +TIFA+++GA +AIS++RLSGP V + + P PR+ASLR + G +LD+ Sbjct: 5 DTIFALASGAGRAAISLLRLSGPDSALVLTRLAGRL-PRPRQASLRRLRHPETGELLDEA 63 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 LL+ FP+P S+TGEDSAE H+HGG AV+ G+ L R A PGEF+RRAF NG++D Sbjct: 64 LLLWFPAPRSYTGEDSAELHLHGGRAVLEGVSAALLAC-GARPAEPGEFTRRAFLNGRLD 122 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L AE +ADLI +ET QRR ++ G L++ Y W ++LT + + EA ++F+E+ + Sbjct: 123 LTAAEGIADLIDAETAAQRRQALRQAGGALAARYAGWGERLTRLLAHQEASIEFAED-GI 181 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 N EV L +I++H++ G GE +R G I+G NAGKSSL NALA ++ Sbjct: 182 PNDLDDEVRQGAATLAAEIAAHLADGGRGERLREGLWAAIIGAPNAGKSSLLNALAGREA 241 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIV+ GTTRDV+ + LDL G V ++DTAG+R+T D +E EG++R E ADL++ Sbjct: 242 AIVSARAGTTRDVVEVRLDLGGVPVLLADTAGLRDTPDEIEAEGVRRARRRAEEADLVIA 301 Query: 305 L--KEINSKKEISFPKNIDFIFIGTKSDLYSTYTE---EYDHLISSFTGEGLEELINKIK 359 L + E + + K DL + +S+ G GL+ L + ++ Sbjct: 302 LFAADAAPDAETLALLRPGTVVVANKVDLAAPPASIGGIAPIALSARDGTGLDALRSLLE 361 Query: 360 SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKI 419 ++ + + RH L + V +LE A ++ ++ AE+LR A SLG++ Sbjct: 362 REAQSRAGLSEEASLTRPRHRAALGEAVDWLEEA---QRAPLPELAAESLRAALRSLGRL 418 Query: 420 TGCVDVEQLLDIIFSKFCIGK 440 TG V VEQ+LD++F FCIGK Sbjct: 419 TGRVGVEQVLDVVFGDFCIGK 439 >gi|293391846|ref|ZP_06636180.1| tRNA modification GTPase TrmE [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952380|gb|EFE02499.1| tRNA modification GTPase TrmE [Aggregatibacter actinomycetemcomitans D7S-1] Length = 451 Score = 276 bits (707), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 171/457 (37%), Positives = 257/457 (56%), Gaps = 28/457 (6%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64 KETI A +T I I+R+SGP +V + + K P PR A F DG +LD+G Sbjct: 2 KETIVAQATAPGRGGIGILRVSGPKAIEVAQAVLGKC-PKPRMADYLPFKEADGTVLDQG 60 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 + + F P SFTGED E HGG V++ +L+ + ++ +RLA PGEFS +AF N K+D Sbjct: 61 IALYFKGPNSFTGEDVLELQGHGGQVVLDLLLKRILRIEGIRLARPGEFSEQAFLNDKLD 120 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ADLI + +E R +++ + GE S+ Q +D + ++R+++EA +DF +EE + Sbjct: 121 LAQAEAIADLIDASSEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEAAIDFPDEE-I 179 Query: 185 QNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 + ++ LNDI+ + + + QG I+R G K+VI G NAGKSSL N LA Sbjct: 180 DFLADGKIEGHLNDIIAQLDKVRAEAKQGS---ILREGMKVVIAGRPNAGKSSLLNTLAG 236 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 ++ AIVTDI GTTRDVL + L+G + I DTAG+R+ D VE+ GI R + E+E AD Sbjct: 237 REAAIVTDIAGTTRDVLREHIHLDGMPLHIIDTAGLRDATDEVERIGISRAWHEIEQADR 296 Query: 302 ILL----------LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH------LISS 345 ILL L ++ S+ P NI I K+DL Y+ +S+ Sbjct: 297 ILLMLDSSDTEQDLTKVRSEFLAKLPNNIPLTIIRNKADLSGEAERLYEEDGYTVVNLSA 356 Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLD 403 T +G++ L + +K + + + + +RHL L R+L+M L + G + Sbjct: 357 KTQQGVDLLRDHLKQAMGYQ-TGMEGGFLARRRHLEALELAARHLQMGHVQLTQFHAG-E 414 Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++AE LR+ +L +ITG + LL IFS FCIGK Sbjct: 415 LLAEELRMVQSALSEITGQFTSDDLLTNIFSSFCIGK 451 >gi|86747518|ref|YP_484014.1| tRNA modification GTPase TrmE [Rhodopseudomonas palustris HaA2] gi|123099260|sp|Q2J357|MNME_RHOP2 RecName: Full=tRNA modification GTPase mnmE gi|86570546|gb|ABD05103.1| tRNA modification GTPase trmE [Rhodopseudomonas palustris HaA2] Length = 460 Score = 276 bits (707), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 175/466 (37%), Positives = 262/466 (56%), Gaps = 32/466 (6%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+ +TIFA+++G LPSA++I+R+SG V + P PR ++ + Sbjct: 1 MHPNDQTIFALASGRLPSALAIVRVSGARARDVLAALTGALPP-PRTVRRVRIRDVNHEL 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D +++ F +P S TGED AEFH+HGG AV+ +++ LA ++R A PGEF+RRAFEN Sbjct: 60 IDDAVVLWFAAPASATGEDVAEFHIHGGRAVLAALVKALASFDDVRPAEPGEFTRRAFEN 119 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GK+DL EAE L DLI ++TE QRRL++ + G L +W ++ + IEA +DF++ Sbjct: 120 GKLDLTEAEGLDDLIHADTEAQRRLAVRQLGGLLGDRARRWRAQIIEALALIEAGIDFAD 179 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHI-SQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 E DVQ L I L +I+ + +QGK E +R+G + I G N GKS+L N L Sbjct: 180 EGDVQGELMAPALRTIATLHGEIAEVLAAQGK-SERLRDGLVVAIAGPPNVGKSTLINRL 238 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 A+++VAIV+ GTTRDV+ + LDL GY V + DTAGIRE++D VE+EG++R A Sbjct: 239 ARREVAIVSPHAGTTRDVIEVQLDLGGYPVTLIDTAGIRESEDSVEQEGVRRAKARAAEA 298 Query: 300 DLILLL---KEINSKKEISFP-----KNIDFI-----------FIGTKSDLYST---YTE 337 DL+L L + I+ E S P ID + G ++L+ T Sbjct: 299 DLVLWLGADEAIDVAVEGSAPVWRVRNKIDLVPQADTVGADSGGAGLAANLWQTEGNVAA 358 Query: 338 EYDHLISSFTGEGLEELINKIKSILSNKFKKL-PFSIPSHKRHLYHLSQTVRYLEMASLN 396 IS+ G+G+ +++ + + F ++ S +RH L Q L + Sbjct: 359 REAFGISAKRGDGVGDMVEALAGFAAQYFAASGEAAVISRERHRLLLQQAEVMLRCS--- 415 Query: 397 EKDCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 GL +++AE LRLA+ +LG++ G VDVE +L IF +FCIGK Sbjct: 416 -MTVGLAPELVAEELRLAAGALGRLLGRVDVEDVLGEIFGRFCIGK 460 >gi|188535566|ref|YP_001909363.1| tRNA modification GTPase TrmE [Erwinia tasmaniensis Et1/99] gi|254811484|sp|B2VCE7|MNME_ERWT9 RecName: Full=tRNA modification GTPase mnmE gi|188030608|emb|CAO98503.1| tRNA modification GTPase TrmE [Erwinia tasmaniensis Et1/99] Length = 454 Score = 276 bits (707), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 172/459 (37%), Positives = 260/459 (56%), Gaps = 24/459 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 MNH +TI A +T + I+R+SG +V + + K P PR A F DG Sbjct: 1 MNH-SDTIVAQATPPGRGGVGILRVSGSKAAEVAQLLLGKL-PKPRYADYLPFRDADGST 58 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED EF HGG +++ +L+ + +P LR+ANPGEFS RAF N Sbjct: 59 LDQGIALWFPGPNSFTGEDVLEFQGHGGPVILDLLLKRILSLPGLRIANPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + +E R ++ + G S+ ++ LTH+R ++EA +DF + Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSAVNSLQGVFSTRVNHLVEALTHLRIYVEAAIDFPD 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + S ++ + + ++++ S+ + G ++R G K+VI G NAGKSSL NALA Sbjct: 179 EE-IDFLSDGKIEAQLHQVIHNLAEVRSEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+E AD Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWHEIEQAD 297 Query: 301 LILLL-----KEINSKKEI------SFPKNIDFIFIGTKSDLY--STYTEEYDH----LI 343 +L + E + EI P+++ + K+D+ + EE + + Sbjct: 298 HVLFMVDGTTTEATNPAEIWPDFIARLPESLPVTVVRNKADITGETRGVEEVNGHSLIRL 357 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCG 401 S+ TGEG+E L + +KS + + + +RHL L +LE L G Sbjct: 358 SARTGEGIENLRDHLKSSMGFS-GNMEGGFLARRRHLQALELAATHLEQGKHQLLAAWAG 416 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LRLA +L +ITG + LL IFS FCIGK Sbjct: 417 -ELLAEELRLAQQALSEITGEFSSDDLLGRIFSSFCIGK 454 >gi|146309632|ref|YP_001190097.1| tRNA modification GTPase TrmE [Pseudomonas mendocina ymp] gi|166234810|sp|A4Y199|MNME_PSEMY RecName: Full=tRNA modification GTPase mnmE gi|145577833|gb|ABP87365.1| tRNA modification GTPase trmE [Pseudomonas mendocina ymp] Length = 455 Score = 276 bits (706), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 170/460 (36%), Positives = 257/460 (55%), Gaps = 25/460 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 MNH ++TI AV+T + I+R+SGP Q+ + IC+++ PR A F+G Sbjct: 1 MNHARDTIAAVATAQGRGGVGIVRVSGPLSGQLAQAICRRELK-PRFAHHGPFYGEQELP 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+GL I FP P SFTGED E HGG V++ +L ++ RLA PGEFS RAF N Sbjct: 60 LDEGLAIYFPGPNSFTGEDVLELQGHGGPVVLDLLLRRCLEL-GARLARPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + +E R ++ + GE S + L +R ++EA +DF E Sbjct: 119 DKLDLAQAEAIADLIEASSEQAARNALRSLQGEFSKRVHALTESLIQLRIYVEAAIDFPE 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + + VL+ + ++ D+S+ + + G ++R+G +VI G NAGKSSL NALA Sbjct: 179 EE-IDFLADGHVLSQLDGVRADLSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + ++G + + DTAG+R+TDD VE+ G++R + AD Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTDDQVERIGVERALKAIGEAD 297 Query: 301 LILLLKEINSKKEI-----------SFPKNIDFIFIGTKSDL----YSTYTEEYDHL--- 342 +LL+ + + + P I K+DL + T H+ Sbjct: 298 RVLLVVDSTAPEAADPFALWPEFLEQRPDPARVTLIRNKADLSGEAVTLQTSADGHVTLS 357 Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDC 400 +S+ + +GLE L +K+ + + + + +RHL L Q +YLE L Sbjct: 358 LSAKSADGLELLREHLKACMGYQ-QTAESGFSARRRHLEALHQAEQYLEHGRNQLTLMGA 416 Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G +++AE+LR+A +LG+ITG + LL IFS FCIGK Sbjct: 417 G-ELLAEDLRMAQQALGEITGAFSSDDLLGRIFSSFCIGK 455 >gi|126724526|ref|ZP_01740369.1| tRNA modification GTPase [Rhodobacterales bacterium HTCC2150] gi|126705690|gb|EBA04780.1| tRNA modification GTPase [Rhodobacterales bacterium HTCC2150] Length = 430 Score = 276 bits (706), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 170/441 (38%), Positives = 247/441 (56%), Gaps = 19/441 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGP---SCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62 +TIFA+++ S ++++R+SG C + C P PR+ LR + G +LD Sbjct: 3 DTIFALASAKGKSGVAVVRISGSLARDCVEKLASTC----PEPRQMGLRKLYDSVGDVLD 58 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 K L++ F SFTGED AE H+HG A V +L+ L+ M LR+A PGEF+RRA ENG+ Sbjct: 59 KALVLFFAQNASFTGEDVAELHLHGSPATVKAVLKTLSDMSGLRIAEPGEFTRRALENGQ 118 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 +DL + E L+DL+ +ETE QRR ++ G L W L H + +EA +DF+ +E Sbjct: 119 LDLAQVEGLSDLVEAETEAQRRQALRIFDGALGVASTAWRGDLVHAAALLEATIDFA-DE 177 Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 DV + EVL+ I ++ D++ I E IR+G+++ I+G N+GKS+L NALA + Sbjct: 178 DVPVDVTPEVLDLIGRVQKDLAREIKGSTAAERIRDGFEVAIVGAPNSGKSTLLNALAGR 237 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 + AI ++I GTTRDV+ + +DL G V I DTAG+R+TDD VE GI+ ADL Sbjct: 238 EAAITSEIAGTTRDVIEVRMDLRGLPVTILDTAGLRKTDDHVEGLGIQLAEKRAAQADLR 297 Query: 303 LLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362 + L + S + I K DL ++E IS TG G++ LI +I L Sbjct: 298 VFLDDDPSALSVEIQSG--DILRRPKGDLSGGDSKES---ISGKTGYGVDLLIEEIADSL 352 Query: 363 SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLD---IIAENLRLASVSLGKI 419 N+ +I +RH L + +E+A E G D AE LR+A +L + Sbjct: 353 ENRASGAGVAI--KERHRVALISATQAIEIAR-EEVILGPDRAEFAAEELRVAIRALASL 409 Query: 420 TGCVDVEQLLDIIFSKFCIGK 440 G VDVEQ+LD IF+ FC+GK Sbjct: 410 IGDVDVEQILDDIFANFCLGK 430 >gi|37528711|ref|NP_932056.1| tRNA modification GTPase TrmE [Photorhabdus luminescens subsp. laumondii TTO1] gi|46577344|sp|Q7MAX1|MNME_PHOLL RecName: Full=tRNA modification GTPase mnmE gi|36788150|emb|CAE17277.1| tRNA modification GTPase TrmE [Photorhabdus luminescens subsp. laumondii TTO1] Length = 454 Score = 276 bits (706), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 168/454 (37%), Positives = 255/454 (56%), Gaps = 23/454 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + I+R+SGP QV E + K P PR A F +DG+ILD+G+ Sbjct: 5 DTIVAQATPPGRGGVGILRVSGPKAAQVAEVVLGKL-PKPRYADYLPFRDVDGQILDQGI 63 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 I FP P SFTGED E HGG +++ +L+ + + +R+ANPGEFS RAF N K+DL Sbjct: 64 AIYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLSGVRIANPGEFSERAFLNDKLDL 123 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E R +M + G S+ Q ++ LTH+R ++EA +DF +EE + Sbjct: 124 AQAEAIADLIDASSEQAARSAMNSLQGAFSTQVHQMVEALTHLRIYVEAAIDFPDEE-ID 182 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S ++ + + ++ SQ + G ++R G K+VI G NAGKSSL NALA ++ A Sbjct: 183 FLSDGKIEAKLDEVIVELERVRSQARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAA 242 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+E AD +L + Sbjct: 243 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFM 302 Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTYT-----EEYDHL-ISSFTG 348 + + + PK++ + K+D+ T Y + +S+ +G Sbjct: 303 VDSTTTNAVEPVEIWPEFMARLPKSLPITVVRNKTDMTDEETSIAEVSGYSLIRLSARSG 362 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIA 406 EG++ L + +K + + +RHL L+ +L+ L G +++A Sbjct: 363 EGIDLLRDHLKETMGFS-SNTEGGFLARRRHLQALNTAAEHLQQGHEQLVVARSG-ELLA 420 Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E LRLA +L +ITG + LL IFS FCIGK Sbjct: 421 EELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454 >gi|330505868|ref|YP_004382737.1| tRNA modification GTPase TrmE [Pseudomonas mendocina NK-01] gi|328920154|gb|AEB60985.1| tRNA modification GTPase TrmE [Pseudomonas mendocina NK-01] Length = 455 Score = 276 bits (705), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 169/460 (36%), Positives = 255/460 (55%), Gaps = 25/460 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 MNH ++TI AV+T + I+R+SGP + + IC+++ PR A FF + Sbjct: 1 MNHARDTIAAVATAQGRGGVGIVRVSGPLAGDLAQAICRRELK-PRFAHHGPFFAEQDQT 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+GL I FP P SFTGED E HGG V++ +L ++ RLA PGEFS RAF N Sbjct: 60 LDEGLAIYFPGPNSFTGEDVLELQGHGGPVVLDLLLRRCLEL-GARLARPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + +E R ++ + GE S + L +R ++EA +DF E Sbjct: 119 DKLDLAQAEAIADLIEASSEQAARNALRSLQGEFSKRVHALTESLIQLRIYVEAAIDFPE 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + + VL+ + ++ D+S+ + + G ++R+G +VI G NAGKSSL NALA Sbjct: 179 EE-IDFLADGHVLSQLDSVRADLSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + ++G + + DTAG+R+TDD VE+ G++R + AD Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTDDHVERIGVERALKAISEAD 297 Query: 301 LILLLKEINSKKEI-----------SFPKNIDFIFIGTKSDL----YSTYTEEYDHL--- 342 +LL+ + + + P I K+DL T H+ Sbjct: 298 RVLLVVDSTAPEAADPFALWPEFLEQRPDPARVTLIRNKADLSGEAVGLQTSADGHVTLS 357 Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDC 400 +S+ + EGLE L +K+ + + + + +RHL L Q +YL+ L Sbjct: 358 LSAKSAEGLELLREHLKACMGYQ-QTAESGFSARRRHLEALHQAEQYLQHGRNQLTLMGA 416 Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G +++AE+LR+A +LG+ITG + LL IFS FCIGK Sbjct: 417 G-ELLAEDLRMAQQALGEITGAFSSDDLLGRIFSSFCIGK 455 >gi|27375745|ref|NP_767274.1| tRNA modification GTPase TrmE [Bradyrhizobium japonicum USDA 110] gi|81842005|sp|Q89WP4|MNME_BRAJA RecName: Full=tRNA modification GTPase mnmE gi|27348883|dbj|BAC45899.1| tRNA modification GTPase [Bradyrhizobium japonicum USDA 110] Length = 452 Score = 276 bits (705), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 178/454 (39%), Positives = 259/454 (57%), Gaps = 16/454 (3%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+ +TIFA+S+G PSAI+++R+SG V + K P PR+AS R G+ Sbjct: 1 MHPRDQTIFALSSGRPPSAIAVVRVSGAQAGLVLTTLAGKL-PAPRQASRRLLRDGTGQP 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D +++ FP P S TGED AEFH HGG AV+ +L ++ +PN+R A PGEF+RRAFEN Sbjct: 60 IDDAVVLWFPGPASATGEDVAEFHAHGGRAVLAALLAAISVIPNMRAAEPGEFTRRAFEN 119 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GK+DL EAE L DLI ++T+ QRR ++ + G L + W +++ + IEA +DFS+ Sbjct: 120 GKLDLTEAEGLDDLIHADTDRQRRQALRQLQGLLGNRARDWRERIIEASALIEAGIDFSD 179 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E DV + I L +I+ ++ E +R+G + I G N GKS+L N LA Sbjct: 180 EGDVPAELRAPAVKAIKALHVEITEVLAAQGHSERLRDGMVVAIAGEPNVGKSTLMNQLA 239 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++DVAIV+ GTTRDV+ + LDL+GY V + DTAGIRETDD VE+EG++R E+AD Sbjct: 240 RRDVAIVSPHAGTTRDVIEVQLDLDGYPVTVIDTAGIRETDDPVEQEGVRRARARAEDAD 299 Query: 301 LILLLKE------------INSKKEISFPKNIDFIFIGTKSDL--YSTYTEEYDHLISSF 346 L+L L E + + + S P + K DL + + + IS+ Sbjct: 300 LVLWLVEGEQAADPASMRSLWTSGDGSHPSGGSVWIVRNKIDLGEFGDEGPQGEFGISAS 359 Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIA 406 G+G+ EL++ + + F ++ + R L Q L SL G ++ A Sbjct: 360 RGDGIRELVDALVKFSAEFFGTSEGALVTRARQRDLLRQASDSLRR-SLELVGEGEELAA 418 Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E LR A+ +LG++ G VDVE +L IF KFCIGK Sbjct: 419 EELRSAAYALGRLLGRVDVEDVLGAIFQKFCIGK 452 >gi|146328997|ref|YP_001209837.1| tRNA modification GTPase TrmE [Dichelobacter nodosus VCS1703A] gi|166991106|sp|A5EY43|MNME_DICNV RecName: Full=tRNA modification GTPase mnmE gi|146232467|gb|ABQ13445.1| tRNA modification GTPase TrmE [Dichelobacter nodosus VCS1703A] Length = 450 Score = 276 bits (705), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 167/449 (37%), Positives = 258/449 (57%), Gaps = 17/449 (3%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 ETI A++T + IIR+SG + I KK PR+A L +F+ L G +D+G+ Sbjct: 5 ETIAAIATPPGIGGVCIIRISGAQAHAIAVNITHKKNLVPRQAILSHFYDLSGEQIDQGI 64 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 ++ FP+P SFTGED E HGGIAV + +L RLA+ GEF++RAF N K+DL Sbjct: 65 VLYFPAPHSFTGEDVVELQGHGGIAVAHALLSATLDF-GARLAHAGEFTQRAFLNDKLDL 123 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + ++ R + + G S D+L +R ++EA LDFSE+E + Sbjct: 124 AQAEAVADLIHARSQDALRAANRSLQGVFSQKIDALADELLRLRVYVEASLDFSEDE-ID 182 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 ++ ++ ++Q + G+++ +G +V+ G NAGKSSL NAL ++ A Sbjct: 183 FLGEGKIREKLVDSLQKTQQLLAQSQQGQLLNDGIHLVLAGKPNAGKSSLLNALLGEERA 242 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVT GTTRD++ D ++G V +SDTAG+RE+ D+VE+EGI+R+F V+ AD++LLL Sbjct: 243 IVTPQAGTTRDIVREDWIIDGIPVHLSDTAGLRESQDLVEQEGIRRSFDAVKRADIVLLL 302 Query: 306 KE------------INSKKEI-SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLE 352 + ++ ++E+ + F+ + K+DL T IS+ TG G+E Sbjct: 303 ADGSARDNDARAEFVSLQEELHQLAPHAQFLVVYNKADLVDEQTAGDGLWISAKTGAGIE 362 Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAENLRL 411 L+ KI + L+ K + + KRH++ L +L+ A E+ +++AE LRL Sbjct: 363 ILLKKIAT-LAGKNQHEETVFIARKRHIHALESVEAHLQRALQQLEQFFVAELVAEELRL 421 Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A ++LG ITG V + LLD IFS FCIGK Sbjct: 422 AHLALGTITGTVSSDDLLDEIFSGFCIGK 450 >gi|281209236|gb|EFA83409.1| GTP-binding protein 3 [Polysphondylium pallidum PN500] Length = 595 Score = 276 bits (705), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 174/503 (34%), Positives = 273/503 (54%), Gaps = 73/503 (14%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK------------------KKPFPR 46 KETI+A+S+GA+ S ++IIR+SGP + + +K PR Sbjct: 99 KETIYALSSGAVKSGVAIIRVSGPQSMTALQQLTRKVLVTNSSTSTTTTTTSSDYNIVPR 158 Query: 47 KASLRYFFG-LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNL 105 L F+ G LD+G+ + F P SFTGED E H+HGG AV++ +LE L+K+ L Sbjct: 159 MTVLSNFYDPTSGEQLDRGMYVWFQGPNSFTGEDVLELHIHGGRAVIHDMLEALSKVDGL 218 Query: 106 RLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKL 165 R+A PGEF++RAFENGK+DL E E LADL+ ++T QR+++++ M G + LY + D+L Sbjct: 219 RMAEPGEFTKRAFENGKMDLTEVEGLADLLDAQTNQQRKIALQQMQGSIGKLYTELRDQL 278 Query: 166 THIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVIL 225 +++EA +DF ++ +++ ++ I+ ++N I H++ GK GE +R+G + I+ Sbjct: 279 IRASAYMEAYIDFGDDAEIEPAVVEQSKQRIIAIRNKIMKHLTDGKRGEKLRDGATVTII 338 Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVE 285 G NAGKSSL N LA + +IV+ I GTTRDV+ + LD+ GY V + DTAGIRE+ D++E Sbjct: 339 GPPNAGKSSLINLLANRRASIVSPIEGTTRDVVEVMLDIGGYPVILGDTAGIRESTDVIE 398 Query: 286 KEGIKRTFLEVENADLILLLKEIN----SKKEISFPKNIDF-----IFIGTK-------- 328 +EG+ V N+++ L + + N S +I P +D IF+ K Sbjct: 399 REGVSMARDRVLNSEITLCVFDCNALIKSNGKIE-PMLLDLIDCNTIFLFNKIDLLLDDD 457 Query: 329 -------------SDLYSTYTEE------------YDHLISSFTGEGLEELINKIKSILS 363 +Y ++ + +S G+++L+++I+ L Sbjct: 458 NNNKWKETKQQILQQIYEAIRQQPLRQSLFKVNNVFSCELSCSNQTGIKDLLSRIELYLK 517 Query: 364 NKF----KKLP-FSIPSHKRHLYHLSQTV-RYLEMASLNEKDCGLDIIAENLRLASVSLG 417 F K+ P + HK HL + +++ YLE D + I +E LR A S+G Sbjct: 518 ELFEINEKEAPLLTRMRHKEHLINCVESLNNYLEYC-----DTDVVIASEELRSAIRSIG 572 Query: 418 KITGCVDVEQLLDIIFSKFCIGK 440 IT V+V+ LLD+IF FCIGK Sbjct: 573 SITYHVNVDDLLDVIFKDFCIGK 595 >gi|68171554|ref|ZP_00544931.1| tRNA modification GTPase TrmE:Small GTP-binding protein domain:GTP-binding [Ehrlichia chaffeensis str. Sapulpa] gi|88658612|ref|YP_506891.1| tRNA modification GTPase TrmE [Ehrlichia chaffeensis str. Arkansas] gi|123494024|sp|Q2GI42|MNME_EHRCR RecName: Full=tRNA modification GTPase mnmE gi|67999020|gb|EAM85694.1| tRNA modification GTPase TrmE:Small GTP-binding protein domain:GTP-binding [Ehrlichia chaffeensis str. Sapulpa] gi|88600069|gb|ABD45538.1| tRNA modification GTPase TrmE [Ehrlichia chaffeensis str. Arkansas] Length = 439 Score = 276 bits (705), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 175/451 (38%), Positives = 254/451 (56%), Gaps = 31/451 (6%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66 TIFA+ T S +++IR+SG + PR A+ + DG ++D+ ++ Sbjct: 3 TIFALCTPWGRSGVAVIRISGEDAAKAFVHFGINSSIKPRTATFTPLYDKDGEVIDEAIV 62 Query: 67 IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126 + F +P SFTGED EFH HG AV+ IL EL K+ A PGEFS RAF N K+DL Sbjct: 63 VYFVAPNSFTGEDVVEFHTHGSFAVIKMILAELGKI--FVPAGPGEFSLRAFLNNKVDLT 120 Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186 AE++ DLI+SETEMQ + ++ MSG L LY W +L I S IEA +DF EE + Sbjct: 121 RAEAIVDLINSETEMQAKQAIRQMSGVLEKLYQNWRQQLIDILSNIEAYIDFPEEVNSSA 180 Query: 187 FSSKE-VLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 ++ + +LN+ L+ + SH++ + GE +R G + ILG N+GKS+LFN LAK+D+A Sbjct: 181 IANIDYLLNN---LQKSLESHLNDDRRGERLRQGIYVTILGEPNSGKSTLFNHLAKRDIA 237 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IV++ GTTRD L +D+ GY + I DTAGIRE+ D VE+EGIKR L+ ENAD +++ Sbjct: 238 IVSEYAGTTRDPLEAHIDVAGYPIIIIDTAGIRESTDPVEQEGIKRAKLKAENADFKIVM 297 Query: 306 ----------KEINS---KKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLE 352 +EI S K I D I T L + + IS + G+E Sbjct: 298 LPYEKRDIFNREIMSLIDDKSICILSKADNI---TDQKLIPVFDFSFIP-ISVYCNIGIE 353 Query: 353 ELINKIKSILSNKFKKL---PFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENL 409 L+N IK + F+ PF +R H+ T+ ++ L+ ++I++E+L Sbjct: 354 NLLNLIKQKVEKDFQFCNTDPFITSERQRK--HIQNTLNIIKSVDLS---LPMEIVSEDL 408 Query: 410 RLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 RL+ LGK+ G + + +LD +F KFCIGK Sbjct: 409 RLSVRELGKVVGVISDDDILDNVFGKFCIGK 439 >gi|156548514|ref|XP_001606101.1| PREDICTED: similar to GTP binding protein (mitochondrial), putative [Nasonia vitripennis] Length = 478 Score = 276 bits (705), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 175/474 (36%), Positives = 266/474 (56%), Gaps = 43/474 (9%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD-GRILDK 63 + TI+A+S+G ++++R+SG E + K PRKA LR G +DK Sbjct: 10 RSTIYALSSGQGKCGVAVVRISGTDARLAIEKMTNIAKLEPRKAYLRNIRNPQTGETIDK 69 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 GL + FP P SFTGEDS EF VHGG+AV+ ++ L+++ + A PGEF++RAF + K+ Sbjct: 70 GLCLWFPGPNSFTGEDSVEFQVHGGVAVLASLMSALSQL-QFQPALPGEFTKRAFFHDKL 128 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL E E LADLI +ETE QR+ ++ G LS+LY W L + IEA +DF EEE+ Sbjct: 129 DLTEIEGLADLIHAETEQQRKQALLQAHGNLSALYSSWRAILLKCLAHIEAYIDFGEEEN 188 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 +++ ++ D+ L I H+S G+ GEI+RNG + VILG N GKSSL N L +++ Sbjct: 189 IESQVFEQCNIDLKDLTKQIEKHLSDGRKGEILRNGIRTVILGEPNVGKSSLLNRLVQRN 248 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEVENADLI 302 AIVT IPGTTRDV+ + ++ GY + ++DTAG+ + T+DI+E EGIKR + AD I Sbjct: 249 AAIVTSIPGTTRDVVELTANISGYPIVLADTAGLNKLTEDIIEIEGIKRARDQASKADFI 308 Query: 303 LLLKEINSKKEI-----------SFPKNIDF--------------IFIGTKSDLYS---- 333 +L+ +N+++ + S+ K+++ + + K DL Sbjct: 309 ILV--MNAEEYVKSCKKYNEYLSSYIKSLELEELILVDEQLASNVMVVVNKVDLLKETDK 366 Query: 334 -TYTEEYDHLISSFTGEGLEELINKIK----SILSNKFKKLP-FSIPSHKRHLYHLSQTV 387 T E IS EG +EL+ ++ SI N + P S H+ H+ + + Sbjct: 367 RTLEEHNLSRISCTDEEGFQELLESMRKHFESICGNPSAENPTISQERHRNHVRACHECL 426 Query: 388 -RYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +Y + S + D + + ++ +R A+ +GKITG V E++LD IF FCIGK Sbjct: 427 LKYFHIISNTDYD--IVLASQEIRKAAKEIGKITGHVSTEEILDTIFKNFCIGK 478 >gi|148285155|ref|YP_001249245.1| tRNA modification GTPase TrmE [Orientia tsutsugamushi str. Boryong] gi|205415786|sp|A5CFM7|MNME_ORITB RecName: Full=tRNA modification GTPase mnmE gi|146740594|emb|CAM81244.1| tRNA modification GTPase TrmE [Orientia tsutsugamushi str. Boryong] Length = 447 Score = 275 bits (704), Expect = 8e-72, Method: Compositional matrix adjust. Identities = 171/453 (37%), Positives = 256/453 (56%), Gaps = 27/453 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-DGRILDKG 64 +TIFA S+ + +++ R+SG + E +C K PRK R +++DK Sbjct: 4 KTIFAQSSAKGKAGVAVFRISGSLSLLIVERLCGKFNIVPRKVYYRTIRCYATSQVIDKA 63 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 L++ F +SFTGED E H HG +AV + + + +RLA PGEF++RAF NGK+D Sbjct: 64 LIVYFKGEQSFTGEDVVEIHTHGSVAVAKMLTRSILECDGIRLAEPGEFAKRAFLNGKMD 123 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L AE L DLI SET MQ + ++ M GEL LY W L I SFIE +DF +EE Sbjct: 124 LTMAEGLVDLIESETLMQHKQAIRQMEGELEKLYSHWRGMLIKILSFIEGYIDFPDEEIP 183 Query: 185 QNF--SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 Q+ +K ++N+ L +IS+H+ + GE++R+G + I G +N GKSSL N L + Sbjct: 184 QSVLREAKSIINN---LTREISNHLGDTRKGEVLRHGIVLAITGETNTGKSSLLNYLTMR 240 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 + AIV+DIPGTTRDV+ LD+ GY + + DTAGIRE+DD +E+EGIKR+ + +N+D+ Sbjct: 241 EAAIVSDIPGTTRDVIEAHLDIGGYPIIVRDTAGIRESDDPIEQEGIKRSLVAFKNSDIR 300 Query: 303 LLL---KEINSKKEI--SFPKNIDFIFIGTKSDLYSTYTEEYDH----------LISSFT 347 +L+ INS + ++ I + K DL + +YD +S Sbjct: 301 ILMIDATNINSVNQTIAHLLNDVYTIIVINKIDLVNY---KYDSSILPCDKPIVAVSLLK 357 Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAE 407 GL+ L+++I S + K P ++P+ R Y S + LE+ L + L + AE Sbjct: 358 QVGLDRLMSEIVS-YAEKIAD-PGNVPAITRERYRNSLN-KALELLQLVNLENDLVLAAE 414 Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +LR+A L ITG + ++ +L IF+ FCIGK Sbjct: 415 DLRMAIRYLEHITGKIKIDDILAEIFASFCIGK 447 >gi|294789735|ref|ZP_06754966.1| tRNA modification GTPase TrmE [Simonsiella muelleri ATCC 29453] gi|294482301|gb|EFG29997.1| tRNA modification GTPase TrmE [Simonsiella muelleri ATCC 29453] Length = 457 Score = 275 bits (704), Expect = 8e-72, Method: Compositional matrix adjust. Identities = 171/457 (37%), Positives = 260/457 (56%), Gaps = 30/457 (6%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66 TI A++T + + +IRLSG + I K P PR A F G+ +D GLL Sbjct: 8 TIAAIATASGRGGVGVIRLSGKDLLPFVQRITGGKIPKPRTALYTDFLDAHGKTIDNGLL 67 Query: 67 IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126 + F +P SFTGED E HGG V+ +L+ ++ R+A GEF++RAF N KIDL Sbjct: 68 LYFAAPASFTGEDVIELQGHGGQIVLQMLLQRCLEL-GARIAEAGEFTKRAFLNNKIDLA 126 Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186 +AES+ADLI + ++ R+++ + GE S+ Q ++ L +R +EA LDF EE D+ Sbjct: 127 QAESVADLIDASSQQAARMAIRSLKGEFSNQIHQLVEDLITLRMLVEATLDFPEE-DIDF 185 Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246 S + + L+N ++ ++ + G I+R G +V++G N GKSSL NALA DVAI Sbjct: 186 LQSADAKGKLRALQNQLAHILTNAQQGAILREGMTVVLVGAPNVGKSSLLNALAGDDVAI 245 Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306 VTDI GTTRD + + L+G + + DTAG+R+T+DIVEK GI+R+ V+NAD+ L+L Sbjct: 246 VTDIAGTTRDTVREQITLDGIPIHMIDTAGLRQTNDIVEKIGIERSEKAVQNADIALILI 305 Query: 307 EIN-----SKKEISF--PKNIDFIFIGTKSDLYSTYTEEYDHL-------------ISSF 346 + + + +EI F P+N+ I I K DL + E D+L +S+ Sbjct: 306 DPDNGVNETTREILFRLPENLKRIEIQNKIDLRNEQPERVDNLSGSLKSGADTLIKLSAK 365 Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG---LD 403 TG GL+ L + + + + + + + RHL L L +A+ DCG ++ Sbjct: 366 TGAGLDLLKQALLAQIGWQGESEGLFL-ARTRHLNALETAQFELNLAA----DCGHHQIE 420 Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++AE+LRLA ++ +ITG + LL +IFS+FCIGK Sbjct: 421 LLAEHLRLAQMACSEITGEFTADDLLGVIFSRFCIGK 457 >gi|294675621|ref|YP_003576236.1| tRNA modification GTPase TrmE [Rhodobacter capsulatus SB 1003] gi|294474441|gb|ADE83829.1| tRNA modification GTPase TrmE [Rhodobacter capsulatus SB 1003] Length = 427 Score = 275 bits (704), Expect = 8e-72, Method: Compositional matrix adjust. Identities = 166/439 (37%), Positives = 255/439 (58%), Gaps = 17/439 (3%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYF-FGLDGRILDKG 64 +TI+A ++G + +++IRLSGP ++ +C + P PR+A++R G D LD+ Sbjct: 2 DTIYAQASGRGKAGVAVIRLSGPRAWEAVAALCGRL-PAPRQAAVRLLRIGADA--LDEA 58 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 L++ F + SFTGE+SAE H+HG +A V +L+ L + LRLA PGEF+RRA E+G++D Sbjct: 59 LVLCFEAGRSFTGEESAELHLHGALATVAAVLKALGSLGFLRLAEPGEFTRRAMESGRLD 118 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L + E LADLI +ETE QR+ ++ +SG + + W KL + +EA +DF+ +ED+ Sbjct: 119 LSQVEGLADLIEAETEAQRKQALAVLSGSVGRMVETWRSKLIRAAALMEACIDFA-DEDL 177 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + E + + S+ I + + E +R G+++ I+G NAGKS+L NALA ++ Sbjct: 178 PVDVTPEAFALLSEVAAQFSAEIGRISVTERVREGFEVAIVGRPNAGKSTLLNALAGREA 237 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AI +++ GTTRDV+ + +DL G V + DTAG+R+T+D VE G+ R + ADL + Sbjct: 238 AITSEVAGTTRDVIEVRMDLSGLAVTLLDTAGLRDTEDQVEAIGVARAIERAKRADLRVF 297 Query: 305 LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364 L + + + P D + G K+DL + D +S TGEG++ L+ I LS Sbjct: 298 LLD-DGDIPLLQPIGDDLVVQG-KADLGGS----GDLRVSGKTGEGVDALVAAITERLSA 351 Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG---LDIIAENLRLASVSLGKITG 421 + + + +RH L + LE A L E G LD+ AE+ R +L + G Sbjct: 352 RAAG--AGVMTRERHRDCLGRASGALESA-LEELGHGLERLDLAAEHCRTGVRALESLLG 408 Query: 422 CVDVEQLLDIIFSKFCIGK 440 VDVE LLD IFS FCIGK Sbjct: 409 RVDVENLLDEIFSSFCIGK 427 >gi|325499511|gb|EGC97370.1| tRNA modification GTPase TrmE [Escherichia fergusonii ECD227] Length = 454 Score = 275 bits (704), Expect = 9e-72, Method: Compositional matrix adjust. Identities = 169/459 (36%), Positives = 257/459 (55%), Gaps = 29/459 (6%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63 + +TI A +T + I+R+SG +V E + K P PR A F DGR+LD+ Sbjct: 3 DNDTIVAQATPPGRGGVGILRISGLKAREVAETVLGKL-PKPRYADYLPFKDADGRVLDQ 61 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 G+ + FP P SFTGED E HGG +++ +L+ + +P LR+A PGEFS RAF N K+ Sbjct: 62 GIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKL 121 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL +AE++ADLI + +E R ++ + G S+ ++ LTH+R ++EA +DF +EE Sbjct: 122 DLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE- 180 Query: 184 VQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 + S ++ LND++ D+ + ++ + G ++R G K+VI G NAGKSSL NALA Sbjct: 181 IDFLSDGKIEAQLNDVI---ADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+E AD Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 297 Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDHL---I 343 +L + + + + P + + K+D+ +E H + Sbjct: 298 RVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRL 357 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401 S+ TGEG++ L N +K + + + +RHL L Q +L+ A L G Sbjct: 358 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG 416 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LRLA +L +ITG + LL IFS FCIGK Sbjct: 417 -ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454 >gi|329891179|ref|ZP_08269522.1| tRNA modification GTPase TrmE [Brevundimonas diminuta ATCC 11568] gi|328846480|gb|EGF96044.1| tRNA modification GTPase TrmE [Brevundimonas diminuta ATCC 11568] Length = 437 Score = 275 bits (702), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 171/441 (38%), Positives = 263/441 (59%), Gaps = 12/441 (2%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TIFA++T AI+++RLSGP+ + PR AS+R + R++D+ L Sbjct: 3 DTIFALATPPGRGAIAVLRLSGPATETTLTALGAGGL-TPRLASVRSLRHEE-RLIDEAL 60 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 ++ F +P S+TGEDSAE H+HGG AVV L + LR A PGEF+RRAF+NG++DL Sbjct: 61 VLRFIAPRSYTGEDSAELHLHGGRAVVEAASAALIAL-GLRPAEPGEFTRRAFQNGRMDL 119 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI +ET+ Q+ ++ + G LS+ Y + L S +EA++DF +EE Sbjct: 120 AQAEAVADLIDAETDAQKSQALGQLDGALSAAYAGFRRDLLKALSLVEAEIDFPDEEVPD 179 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 N + + + L D+ + ++ G +R GY+IV++G +NAGKSSLFNAL ++ A Sbjct: 180 NLA-RTAGPILDALAADLRAALADSDRGRRVREGYRIVLIGETNAGKSSLFNALVAREAA 238 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVT I GTTRDVL D+ + GY V +SDTAG+R++DD VE EGI+R L E ADL L + Sbjct: 239 IVTPIAGTTRDVLDADIMIGGYAVTLSDTAGLRDSDDPVEAEGIRRARLRAEGADLRLWV 298 Query: 306 K----EINSKKEISFPKNIDFIFIGTKSDLYSTYTE-EYDHL-ISSFTGEGLEELINKIK 359 + E ++ F ++ D + KSDL + T + + L +S+ TG+GL EL + I Sbjct: 299 RSPSTEGDTDPAFGFIRSSDLQVL-NKSDLGAVATAPDLEALSVSTTTGQGLSELHDWIA 357 Query: 360 SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKI 419 + L+ F + +RH L++ + +E D ++ ++LR A+ +L ++ Sbjct: 358 ARLARDLSGADFPAVTRERHRRRLAEALAAVEAGR-RALDLAPEMAGDDLRRAADALARV 416 Query: 420 TGCVDVEQLLDIIFSKFCIGK 440 TG + VE +L +FS FCIGK Sbjct: 417 TGAIGVEDILGEVFSSFCIGK 437 >gi|312174334|emb|CBX82587.1| tRNA modification GTPase trmE [Erwinia amylovora ATCC BAA-2158] Length = 474 Score = 275 bits (702), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 172/460 (37%), Positives = 257/460 (55%), Gaps = 26/460 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 MNH +TI A +T + I+R+SG +V + + K P PR A F DG Sbjct: 21 MNH-SDTIVAQATPPGRGGVGILRVSGNKAARVAQLLLGKL-PKPRHADYLPFCDADGST 78 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG +++ +L+ + +P LR+ANPGEFS RAF N Sbjct: 79 LDQGIALWFPGPHSFTGEDVLELQGHGGPVILDLLLKRILSLPGLRIANPGEFSERAFLN 138 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + +E R ++ + G S+ ++ LTH+R ++EA +DF + Sbjct: 139 DKLDLAQAEAIADLIDASSEQAARSAVNSLQGVFSTRINHLVEALTHLRIYVEAAIDFPD 198 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + S ++ + + D+ + S+ + G ++R G K+VI G NAGKSSL NALA Sbjct: 199 EE-IDFLSDGKIEAQLHQVIADLDAVRSEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 257 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+E AD Sbjct: 258 GREAAIVTDIAGTTRDVLREHIQIDGMPLHIIDTAGLREASDEVERIGIERAWHEIEQAD 317 Query: 301 LILLL-----KEINSKKEI------SFPKNIDFIFIGTKSDLYS---TYTEEYDHL---I 343 +L + + EI P+ + + K+D+ +E HL + Sbjct: 318 HVLFMVDGTTTDATDPAEIWPDFIARLPETLPVTVVRNKADITGEIREISEVNGHLLIRL 377 Query: 344 SSFTGEGLEELINKIKSILSNKFK-KLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDC 400 S+ TGEG+E L N +K LS + + + +RHL L +L+ L Sbjct: 378 SARTGEGIENLRNHLK--LSMGWHGSMEGGFLARRRHLQALELAATHLQQGKHQLLAARA 435 Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G +++AE LR+A +L +ITG + LL IFS FCIGK Sbjct: 436 G-ELLAEELRMAQQALSEITGEFSSDDLLGRIFSSFCIGK 474 >gi|121606994|ref|YP_984323.1| tRNA modification GTPase TrmE [Polaromonas naphthalenivorans CJ2] gi|205415792|sp|A1VUS4|MNME_POLNA RecName: Full=tRNA modification GTPase mnmE gi|120595963|gb|ABM39402.1| tRNA modification GTPase trmE [Polaromonas naphthalenivorans CJ2] Length = 478 Score = 275 bits (702), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 171/475 (36%), Positives = 256/475 (53%), Gaps = 47/475 (9%) Query: 8 IFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLI 67 I A++T + I+RLSG V + +C +K PR+A+ F G+I+DKGL I Sbjct: 9 IVAIATAPGRGGVGIVRLSGQRIAPVVQALCGRKLS-PRQATYLPFRDAHGQIIDKGLAI 67 Query: 68 VFPSPESFTGEDSAEFHVHGGIAVVNGILEELAK-------------MPNLRLANPGEFS 114 FP+P S+TGED E HGG V+ +L + + LR+A PGEF+ Sbjct: 68 FFPAPHSYTGEDVLELQAHGGPVVLQLLLARCLEAGAALDPATGQPVLAQLRVAEPGEFT 127 Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174 RAF N KIDL +AE++ADLI + TE R + MSGE S +++L H+R +EA Sbjct: 128 ERAFLNDKIDLAQAEAIADLIDASTETAARSAARSMSGEFSQAVNTLLEQLIHLRMLVEA 187 Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234 LDF EE D+ + +L L+ ++S +++ G I+R G K+VI G N GKSS Sbjct: 188 TLDFPEE-DIDFLQQADAQGQLLRLQATLASVLARATQGAILREGIKVVIAGQPNVGKSS 246 Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294 L NALA ++AIVT + GTTRD ++ + +EG + + DTAG+RE D VEK GI+R + Sbjct: 247 LLNALAGAELAIVTPVAGTTRDKVSQLIQIEGVPLHVVDTAGLREALDEVEKIGIQRAWT 306 Query: 295 EVENADLILLLKE----------------------INSKKEISFPKNIDFIFIGTKSDLY 332 E+E+AD +L L + + S + PKN I + KSD+ Sbjct: 307 EIESADAVLFLHDLARHDATENPLYAINYIADDARLQSALALKLPKNTAIIDVWNKSDMA 366 Query: 333 STYTEEYDH---LISSFTGEGLEELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVR 388 + LIS+ TG GL+ L ++ ++ ++ P + + +RH+ L ++V+ Sbjct: 367 GPELLRQVNGGVLISAKTGAGLQALREQLLRVVG--WQAAPEGVFMARERHVSAL-RSVQ 423 Query: 389 YLEMASLNEKDC---GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + + N+ LD++AE+LR A + L ITG + + LL IFSKFCIGK Sbjct: 424 IQLLTAQNQLQAAVPALDLLAEDLRQAQLHLSSITGAFNADDLLGEIFSKFCIGK 478 >gi|73666665|ref|YP_302681.1| tRNA modification GTPase TrmE [Ehrlichia canis str. Jake] gi|123615194|sp|Q3YT72|MNME_EHRCJ RecName: Full=tRNA modification GTPase mnmE gi|72393806|gb|AAZ68083.1| tRNA modification GTPase trmE [Ehrlichia canis str. Jake] Length = 441 Score = 275 bits (702), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 175/451 (38%), Positives = 259/451 (57%), Gaps = 31/451 (6%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66 TIFA+ T S +++IR+SG + PR A+ + + G I+D+ ++ Sbjct: 5 TIFALCTPWGKSGVAVIRVSGKDAAKAFLHFGISSSIKPRTATFAHLYNSKGEIIDEVII 64 Query: 67 IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126 + F +P SFTGED EFH HG +AV+ IL EL K+ A PGEFS RAF N K+DL Sbjct: 65 VYFVAPSSFTGEDVVEFHTHGSLAVIKMILAELGKI--FVPAGPGEFSLRAFLNNKVDLT 122 Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186 AE++ DLI+SETEMQ + ++ MSG L LY W +L I S IEA +DF EE + Sbjct: 123 RAEAIVDLINSETEMQAKQAIRQMSGALEKLYQSWRQQLIDILSNIEAYIDFPEEVNSAA 182 Query: 187 FSS-KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 ++ +LN+ L+ + H++ + GE +R G I I+G N+GKS+LFN LAK+D+A Sbjct: 183 LANIGYLLNN---LQESLECHLNDDRKGERLRQGIYIAIVGEPNSGKSTLFNHLAKRDIA 239 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IV++ GTTRD L +D+ GY + I DTAGIR++ D++E+EGI+R L+ ENAD +++ Sbjct: 240 IVSEYAGTTRDTLEAHIDVAGYPIVIIDTAGIRDSADLIEQEGIRRAKLKAENADFKIVM 299 Query: 306 ----------KEINS---KKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLE 352 EI + +K I D I T+ +L S + + IS G+E Sbjct: 300 LPYEKRNVFNNEIMNLIDEKSICVLSKADNI---TEHELISIFNFSFVP-ISVCCNRGIE 355 Query: 353 ELINKIKSILSNKFK---KLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENL 409 L+N IK + F+ PF I S ++ L H+ T+ ++ L + ++I+AE+L Sbjct: 356 ILLNLIKQRVEKDFQFCSTHPF-ITSERQRL-HIQNTLNIVKNMDL---ELPMEIVAEDL 410 Query: 410 RLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 RL+ LGK+ G + E +LD +F KFCIGK Sbjct: 411 RLSVRELGKVVGVISDEDILDNVFGKFCIGK 441 >gi|218702556|ref|YP_002410185.1| tRNA modification GTPase TrmE [Escherichia coli IAI39] gi|254811479|sp|B7NR09|MNME_ECO7I RecName: Full=tRNA modification GTPase mnmE gi|218372542|emb|CAR20417.1| GTPase [Escherichia coli IAI39] Length = 454 Score = 274 bits (701), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 171/459 (37%), Positives = 257/459 (55%), Gaps = 29/459 (6%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63 + +TI A +T + I+R+SG +V E + K P PR A F DG +LD+ Sbjct: 3 DNDTIVAQATPPGRGGVGILRISGLKAREVAETVLGKL-PKPRYADYLPFKDADGSVLDQ 61 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 G+ + FP P SFTGED E HGG +++ +L+ + +P LR+A PGEFS RAF N K+ Sbjct: 62 GIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKL 121 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL +AE++ADLI + +E R ++ + G S+ ++ LTH+R ++EA +DF +EE Sbjct: 122 DLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE- 180 Query: 184 VQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 + S ++ LND++ D+ + ++ + G ++R G K+VI G NAGKSSL NALA Sbjct: 181 IDFLSDGKIEAQLNDVI---ADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+E AD Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 297 Query: 301 LILLL-----------KEINSKKEISFPKNIDFIFIGTKSDLYST---YTEEYDHL---I 343 +L + EI S+ P + + K+D+ +E H + Sbjct: 298 RVLFMVDGTTTDAVDPAEIWSEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRL 357 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401 S+ TGEG++ L N +K + + + +RHL L Q +L+ A L G Sbjct: 358 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG 416 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LRLA +L +ITG + LL IFS FCIGK Sbjct: 417 -ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454 >gi|34499858|ref|NP_904073.1| tRNA modification GTPase TrmE [Chromobacterium violaceum ATCC 12472] gi|46577367|sp|Q7NPT9|MNME_CHRVO RecName: Full=tRNA modification GTPase mnmE gi|34105708|gb|AAQ62062.1| thiophene and furan oxidation protein ThdF [Chromobacterium violaceum ATCC 12472] Length = 450 Score = 274 bits (701), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 168/455 (36%), Positives = 258/455 (56%), Gaps = 22/455 (4%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 +++ TI AV+T + +IR+SG + I K P PR A+ FF G+ Sbjct: 3 LSYTPATICAVATAPGRGGVGVIRVSGKDLLPFAQAISGGKTPKPRYATYTDFFDAHGQA 62 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD GLL+ FP P SFTGED E HGG V+ +L ++ RLA PGEF++RAF N Sbjct: 63 LDNGLLLFFPGPNSFTGEDVIELQGHGGPVVLKMLLARCVEL-GARLAEPGEFTKRAFLN 121 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AES+ADLI + +E R +++ + G S +D+L ++R +EA LDF E Sbjct: 122 DKLDLAQAESVADLIDASSETAARSALKSLKGAFSREVHGLVDELINLRMLVEATLDFPE 181 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + + + + L+ + + K G I+R G +V++G N GKSSL NALA Sbjct: 182 EE-IDFLKQADAIGRLRRLRAQLVGVQATAKQGAILREGMHVVLVGQPNVGKSSLMNALA 240 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 D+AIVTDI GTTRD + ++ ++G V I DTAG+R+TDD+VEK GI+RT+ VE AD Sbjct: 241 GDDIAIVTDIAGTTRDTVREEIVIDGVPVHIIDTAGLRDTDDVVEKIGIERTWQAVERAD 300 Query: 301 LILLLKEINSKKEIS---------FPKNIDFIFIGTKSDL---YSTYTEEYDH---LISS 345 L LLL ++S++ ++ P + + + K DL + E+ H +S+ Sbjct: 301 LALLL--VDSREGLTAEVQSILERLPPALPRVQVFNKVDLSGEAAGLAEQDGHPLVRLSA 358 Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDII 405 T +G++ L K+ ++ + + +RHL +++ +LE+A + + ++I Sbjct: 359 RTHDGVDILKAKLLEMIGYSGADEGVFL-ARQRHLDAIARAADHLELAEADWEQ--VEIF 415 Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 AE LR+A +L +ITG + LL +IFS+FCIGK Sbjct: 416 AEELRMAQNALSEITGEFSADDLLGVIFSRFCIGK 450 >gi|33598900|ref|NP_886543.1| tRNA modification GTPase TrmE [Bordetella parapertussis 12822] gi|46577407|sp|Q7W2J0|MNME_BORPA RecName: Full=tRNA modification GTPase mnmE gi|33575030|emb|CAE39696.1| putative tRNA modification GTPase [Bordetella parapertussis] Length = 450 Score = 274 bits (701), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 171/439 (38%), Positives = 252/439 (57%), Gaps = 25/439 (5%) Query: 20 ISIIRLSGPSCFQVCEFICKKKKPF-PRKASLRYFFGLDGRILDKGLLIVFPSPESFTGE 78 I ++R+SGP ++ + + + P PR A F DG ++D+GL I F +P S+TGE Sbjct: 19 IGVVRISGPDLAELAQRLFGR--PLTPRHAHYLPFRAADGEVIDEGLAIYFRAPHSYTGE 76 Query: 79 DSAEFHVHGGIAVVNGILEELAKMPN---LRLANPGEFSRRAFENGKIDLLEAESLADLI 135 D E HGG AV+ IL + + LR A PGEF+RRAF N ++DL +AE++ADLI Sbjct: 77 DVLELQGHGGPAVLRRILARCLQAGHDLGLRPAEPGEFTRRAFLNERLDLAQAEAVADLI 136 Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED--VQNFSSKEVL 193 + +E R +M +SGE S D++ H+R +EA LDF EEE ++ + ++ L Sbjct: 137 DASSEAAARGAMASLSGEFSQRVNDLSDRIIHLRMLVEATLDFPEEEIDFLEKYQARPTL 196 Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253 L +D+ + I+Q + G I+R G +V+ G N GKSSL NALA D+AIVT I GT Sbjct: 197 Q---ALTHDLDTLIAQARQGVILREGLHVVLAGKPNVGKSSLLNALAGDDIAIVTPIAGT 253 Query: 254 TRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313 TRD + ++ ++G + I DTAG+R+TDD VE GI+RT+ E+E ADLIL L+++ + Sbjct: 254 TRDKVVQEIHIDGVPLHIVDTAGLRDTDDAVESIGIERTWKEIERADLILHLQDVTQPPD 313 Query: 314 -------ISFPKNIDFIFIGTKSDLY-STYTEEYDHL-ISSFTGEGLEELINKIKSILS- 363 P + + K DL + + + D L IS+ G GL+ L ++ + Sbjct: 314 HLDAQIVRRLPARTPVLNVFNKVDLLDAAFQGQPDSLAISARGGIGLDALRQRLLQLAGW 373 Query: 364 NKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LNEKDCGLDIIAENLRLASVSLGKITG 421 N + P+ + +RHL+ L Q ++LE+A+ E D LD+ AE LRLA +L ITG Sbjct: 374 NPGAESPWL--ARERHLHALQQAAQHLEIATEHAREDDRVLDLFAEELRLAHEALTGITG 431 Query: 422 CVDVEQLLDIIFSKFCIGK 440 + LL IFS FCIGK Sbjct: 432 KFTSDDLLGEIFSSFCIGK 450 >gi|33603979|ref|NP_891539.1| tRNA modification GTPase TrmE [Bordetella bronchiseptica RB50] gi|46577412|sp|Q7WDI4|MNME_BORBR RecName: Full=tRNA modification GTPase mnmE gi|33568955|emb|CAE35369.1| putative tRNA modification GTPase [Bordetella bronchiseptica RB50] Length = 450 Score = 274 bits (701), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 171/439 (38%), Positives = 252/439 (57%), Gaps = 25/439 (5%) Query: 20 ISIIRLSGPSCFQVCEFICKKKKPF-PRKASLRYFFGLDGRILDKGLLIVFPSPESFTGE 78 I ++R+SGP ++ + + + P PR A F DG ++D+GL I F +P S+TGE Sbjct: 19 IGVVRISGPDLAELAQRLFGR--PLTPRHAHYLPFRAADGEVIDEGLAIYFRAPHSYTGE 76 Query: 79 DSAEFHVHGGIAVVNGILEELAKMPN---LRLANPGEFSRRAFENGKIDLLEAESLADLI 135 D E HGG AV+ IL + + LR A PGEF+RRAF N ++DL +AE++ADLI Sbjct: 77 DVLELQGHGGPAVLRRILARCLQAGHDLGLRPAEPGEFTRRAFLNERLDLAQAEAVADLI 136 Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED--VQNFSSKEVL 193 + +E R +M +SGE S D++ H+R +EA LDF EEE ++ + ++ L Sbjct: 137 DASSEAAARGAMTSLSGEFSQRVNDLSDRIIHLRMLVEATLDFPEEEIDFLEKYQARPTL 196 Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253 L +D+ + I+Q + G I+R G +V+ G N GKSSL NALA D+AIVT I GT Sbjct: 197 Q---ALTHDLDTLIAQARQGVILREGLHVVLAGKPNVGKSSLLNALAGDDIAIVTPIAGT 253 Query: 254 TRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313 TRD + ++ ++G + I DTAG+R+TDD VE GI+RT+ E+E ADLIL L+++ + Sbjct: 254 TRDKVVQEIHIDGVPLHIVDTAGLRDTDDAVESIGIERTWKEIERADLILHLQDVTQPPD 313 Query: 314 -------ISFPKNIDFIFIGTKSDLY-STYTEEYDHL-ISSFTGEGLEELINKIKSILS- 363 P + + K DL + + + D L IS+ G GL+ L ++ + Sbjct: 314 HLDAQIVRRLPARTPVLNVFNKVDLLDAAFQGQPDSLAISARGGIGLDALRQRLLQLAGW 373 Query: 364 NKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LNEKDCGLDIIAENLRLASVSLGKITG 421 N + P+ + +RHL+ L Q ++LE+A+ E D LD+ AE LRLA +L ITG Sbjct: 374 NPGAESPWL--ARERHLHALQQAAQHLEIATEHAREDDRVLDLFAEELRLAHEALTGITG 431 Query: 422 CVDVEQLLDIIFSKFCIGK 440 + LL IFS FCIGK Sbjct: 432 KFTSDDLLGEIFSSFCIGK 450 >gi|326404882|ref|YP_004284964.1| tRNA modification GTPase MnmE [Acidiphilium multivorum AIU301] gi|325051744|dbj|BAJ82082.1| tRNA modification GTPase MnmE [Acidiphilium multivorum AIU301] Length = 433 Score = 274 bits (701), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 173/451 (38%), Positives = 254/451 (56%), Gaps = 38/451 (8%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR--ILD 62 + IFA ++G + AIS++RLSG +V + P PR+ASLR F DGR I+D Sbjct: 6 PDVIFAPASG-VGGAISLLRLSGAGVARVIGALAGSL-PAPRRASLRSFR--DGRRGIID 61 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 +GLL+ FP P S TGED AEFH+HGG AV I L + R A PGEFSRRAF N + Sbjct: 62 RGLLLWFPGPASVTGEDYAEFHLHGGRAVRAAITAALLDL-GARPAEPGEFSRRAFLNSR 120 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 +DLLEAE +ADLI +ETE QR+L+++ G +S W + L + + + A +DF++E Sbjct: 121 LDLLEAEGIADLIDAETEAQRQLALDLAGGAMSRAVAAWREALIGLMAQLAALIDFADE- 179 Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 D+ +L + L+++I + I G E +R G +IV+LG NAGKS+L NALA + Sbjct: 180 DLPAEVEAAMLASMARLRDEIVAAIGAGLAAERLREGVEIVVLGAPNAGKSTLVNALAGE 239 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 +VAIV+DIPGTTRD + + LDL G V++ DTAG+R +DD +E EG++R ADL+ Sbjct: 240 EVAIVSDIPGTTRDAIGVRLDLGGVPVRLVDTAGLRRSDDAIEAEGVRRAEAHARRADLL 299 Query: 303 LLLKEINSKKEISF---PKNIDFIFIGTKSDL----------YSTYTEEYDHLISSFTGE 349 +L + + +F P ++ + I TK+DL S T + + Sbjct: 300 IL---CGAAPDFAFPDAPADVPALRIATKADLGGAVPAAMLAVSARTGAGLADLLAALRA 356 Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENL 409 +E L+ + LP R + L L+ A + ++ AE + Sbjct: 357 RVEALVER------GAGPALP-----RPRQIACLRDVAAALDRALAIDVP---ELRAEEM 402 Query: 410 RLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + A+V+L ++TG + VE +LD +FS FCIGK Sbjct: 403 QAAAVALARLTGTIGVEDVLDQVFSSFCIGK 433 >gi|56417300|ref|YP_154374.1| tRNA modification GTPase TrmE [Anaplasma marginale str. St. Maries] gi|255004780|ref|ZP_05279581.1| tRNA modification GTPase TrmE [Anaplasma marginale str. Virginia] gi|81821241|sp|Q5P9B1|MNME_ANAMM RecName: Full=tRNA modification GTPase mnmE gi|56388532|gb|AAV87119.1| thiophene and furan oxidation protein [Anaplasma marginale str. St. Maries] Length = 443 Score = 274 bits (700), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 168/448 (37%), Positives = 254/448 (56%), Gaps = 22/448 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TIFA+ST S +++IR+SG + + + K+ R A+ + + + +D+ + Sbjct: 5 DTIFALSTPMGKSGVAVIRVSGHDALKSMQLLGVKEPVRSRVATCKTLYDKKRQPIDQAV 64 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 ++ FP P SFTGED E VHG +AV+ + EEL + R+A PGEFS RAF NGKIDL Sbjct: 65 VLYFPGPGSFTGEDVVELQVHGSLAVIRLLFEELQTV--FRIAEPGEFSLRAFLNGKIDL 122 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 AE +ADL++SETE Q R + SG L LY +W L I S +EA +DF ++ Q Sbjct: 123 TRAEGIADLVNSETEAQLRQAFAQSSGFLERLYEEWRSSLVDILSDLEAYIDFPDDVSPQ 182 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S V + + L N + H+ G GE +R+G ++ ILG N GKS+LFN LA++D+A Sbjct: 183 ILRS--VHDRVKELHNSLERHLDDGHRGERLRHGMRVAILGKPNVGKSTLFNHLARRDMA 240 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IV++ PGTTRDVL +D+ GY + DTAGIRE+ D VE+EGI R E AD+ ++L Sbjct: 241 IVSEYPGTTRDVLEAHVDIGGYPFIVVDTAGIRESTDFVEREGIMRAKSEAATADIRIML 300 Query: 306 KEINSKKEISFPKNID------FIFIGTKSDLYSTYTEEYD-------HLISSFTGEGLE 352 + + + I+ I++ +K+D S E +L+S T G++ Sbjct: 301 FPHSEAGNLGVHEAIEGGDDGKTIYVLSKAD--SAKEGETRIIEGKQFYLVSVHTNLGVD 358 Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLA 412 L++ +K + F K + + +RH HL + + + + +I+AE LRLA Sbjct: 359 SLLSALKERAIDGFPKSGDVLITSQRHRGHLQSAAKVISDIT---DEMPAEIVAEYLRLA 415 Query: 413 SVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + +GK+TG V + +LD IF +FCIGK Sbjct: 416 TKEIGKVTGAVYGDDILDNIFKRFCIGK 443 >gi|85375437|ref|YP_459499.1| tRNA modification GTPase TrmE [Erythrobacter litoralis HTCC2594] gi|122543372|sp|Q2N6I9|MNME_ERYLH RecName: Full=tRNA modification GTPase mnmE gi|84788520|gb|ABC64702.1| tRNA modification GTPase [Erythrobacter litoralis HTCC2594] Length = 424 Score = 274 bits (700), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 165/437 (37%), Positives = 244/437 (55%), Gaps = 16/437 (3%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 ETIFA+S+GA P+AI +IR+SG E + P RKA+LR +G+ LD L Sbjct: 2 ETIFALSSGAPPAAIGVIRISGTEARGALEALAGSV-PDARKAALRRLRDGEGKTLDDAL 60 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 ++ P P++ TGED E H HGG AV+ I L MP LR A PGEF+RRAF NG+IDL Sbjct: 61 VLWLPGPDNATGEDCVELHCHGGRAVIAAIERTLGTMPGLRRAEPGEFTRRAFANGRIDL 120 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 EAE LADL+ +ETE+QR++ G LS L G W +++ + + +E+ LDFS+E+DV Sbjct: 121 AEAEGLADLLFAETELQRQVLQASAGGRLSELVGGWRERVLALSAQVESALDFSDEDDVD 180 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 + D+ L +++ + + ++ E +R+G ++V G NAGKS+LFNAL + + A Sbjct: 181 ELAPA-FYTDVSTLADELGEWLERPQV-ERLRDGVRVVFAGPPNAGKSTLFNALLQSEAA 238 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEVENADLILL 304 IV+ I GTTRDVL + G + DTAG+ E DD +E+ GI R + +AD++L Sbjct: 239 IVSPIAGTTRDVLERPVAFGGTPFTLIDTAGLHEGGDDSIERIGIDRARAALRDADIVLW 298 Query: 305 LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL-ISSFTGEGLEELINKIKSILS 363 L E P N I +SD+ + L +S+ TGEG++ L+ ++ Sbjct: 299 L-----GPEGEGPDNA--WEIDAQSDIDERTAKSAPRLRLSAKTGEGIDALVRDLRDAAR 351 Query: 364 NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCV 423 + + P + + R LS+ L + + L I AE+LR A + + TG Sbjct: 352 DLLPR-PGDVAVNARQHALLSEAAGELAEITRGQD---LLITAEHLRTARSAFDRFTGRA 407 Query: 424 DVEQLLDIIFSKFCIGK 440 E +LD +F +FCIGK Sbjct: 408 TTEDMLDALFGRFCIGK 424 >gi|74314021|ref|YP_312440.1| tRNA modification GTPase TrmE [Shigella sonnei Ss046] gi|123615900|sp|Q3YWA7|MNME_SHISS RecName: Full=tRNA modification GTPase mnmE gi|73857498|gb|AAZ90205.1| GTP-binding protein in thiophene and furan oxidation [Shigella sonnei Ss046] gi|323173325|gb|EFZ58954.1| tRNA modification GTPase TrmE [Escherichia coli LT-68] Length = 454 Score = 274 bits (700), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 169/459 (36%), Positives = 256/459 (55%), Gaps = 29/459 (6%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63 + +TI A +T + I+R+SG +V E + K P PR A F DG +LD+ Sbjct: 3 DNDTIVAQATPPGRGGVGILRISGLKAREVAETVLGKL-PKPRYADYLPFKDADGSVLDQ 61 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 G+ + FP P SFTGED E HGG +++ +L+ + +P LR+A PGEFS RAF N K+ Sbjct: 62 GIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKL 121 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL +AE++ADLI + +E R ++ + G S+ ++ LTH+R ++EA +DF +EE Sbjct: 122 DLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE- 180 Query: 184 VQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 + S ++ LND++ D+ + ++ + G ++R G K+VI G NAGKSSL NALA Sbjct: 181 IDFLSDGKIEAQLNDVI---ADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+E AD Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 297 Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDHL---I 343 +L + + + + P + + K+D+ +E H + Sbjct: 298 RVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRL 357 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401 S+ TGEG+E L N +K + + + +RHL L Q +L+ A L G Sbjct: 358 SARTGEGVEVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG 416 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LRLA +L +ITG + LL IFS FCIGK Sbjct: 417 -ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454 >gi|148261393|ref|YP_001235520.1| tRNA modification GTPase TrmE [Acidiphilium cryptum JF-5] gi|205829064|sp|A5G169|MNME_ACICJ RecName: Full=tRNA modification GTPase mnmE gi|146403074|gb|ABQ31601.1| tRNA modification GTPase trmE [Acidiphilium cryptum JF-5] Length = 433 Score = 274 bits (700), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 172/447 (38%), Positives = 250/447 (55%), Gaps = 32/447 (7%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR--ILDK 63 + IFA ++G + AIS++RLSG +V + P PR+ASLR F DGR I+D+ Sbjct: 7 DVIFAPASG-VGGAISLLRLSGAGVARVIGALAGSL-PAPRRASLRSFR--DGRRGIIDR 62 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 GLL+ FP P S TGED AEFH+HGG AV I L + R A PGEFSRRAF N ++ Sbjct: 63 GLLLWFPGPASVTGEDYAEFHLHGGRAVRAAITAALLDL-GARPAEPGEFSRRAFLNSRL 121 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DLLEAE +ADLI +ETE QR+L+++ G +S W + L + + + A +DF++E D Sbjct: 122 DLLEAEGIADLIDAETEAQRQLALDLAGGAMSRAVAAWREALIGLMAQLAALIDFADE-D 180 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 + +L + L+++I + I G E +R G +IV+LG NAGKS+L NALA ++ Sbjct: 181 LPAEVEAAMLASMARLRDEIVAAIGAGLAAERLREGVEIVVLGAPNAGKSTLVNALAGEE 240 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303 VAIV+DIPGTTRD + + LDL G V++ DTAG+R +DD +E EG++R ADL++ Sbjct: 241 VAIVSDIPGTTRDAIGVRLDLGGVPVRLVDTAGLRRSDDAIEAEGVRRAEAHARRADLLI 300 Query: 304 LLKEINSKKEISFPKNIDFIFIGTKSDL----------YSTYTEEYDHLISSFTGEGLEE 353 L P ++ + I TK+DL S T + + +E Sbjct: 301 LCGAAPDFVVPDAPADVPALRIATKADLGGAVPAAMLAVSARTGAGLADLLAALRARVEA 360 Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLAS 413 L+ + LP R + L L+ A + ++ AE ++ A+ Sbjct: 361 LVER------GAGPALP-----RPRQIACLRDVAAALDRALAIDVP---ELRAEEMQAAA 406 Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440 V+L ++TG + VE +LD +FS FCIGK Sbjct: 407 VALARLTGTIGVEDVLDQVFSSFCIGK 433 >gi|300932339|ref|ZP_07147606.1| tRNA modification GTPase TrmE [Escherichia coli MS 187-1] gi|300459909|gb|EFK23402.1| tRNA modification GTPase TrmE [Escherichia coli MS 187-1] Length = 474 Score = 273 bits (699), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 169/459 (36%), Positives = 256/459 (55%), Gaps = 29/459 (6%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63 + +TI A +T + I+R+SG +V E + K P PR A F DG +LD+ Sbjct: 23 DNDTIVAQATPPGRGGVGILRISGFKAREVAETVLGKL-PKPRYADYLPFKDADGSVLDQ 81 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 G+ + FP P SFTGED E HGG +++ +L+ + +P LR+A PGEFS RAF N K+ Sbjct: 82 GIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKL 141 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL +AE++ADLI + +E R ++ + G S+ ++ LTH+R ++EA +DF +EE Sbjct: 142 DLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE- 200 Query: 184 VQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 + S ++ LND++ D+ + ++ + G ++R G K+VI G NAGKSSL NALA Sbjct: 201 IDFLSDGKIEAQLNDVI---ADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 257 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+E AD Sbjct: 258 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 317 Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDHL---I 343 +L + + + + P + + K+D+ +E H + Sbjct: 318 RVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRL 377 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401 S+ TGEG+E L N +K + + + +RHL L Q +L+ A L G Sbjct: 378 SARTGEGVEVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG 436 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LRLA +L +ITG + LL IFS FCIGK Sbjct: 437 -ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 474 >gi|323164682|gb|EFZ50477.1| tRNA modification GTPase TrmE [Shigella sonnei 53G] Length = 454 Score = 273 bits (699), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 169/459 (36%), Positives = 256/459 (55%), Gaps = 29/459 (6%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63 + +TI A +T + I+R+SG +V E + K P PR A F DG +LD+ Sbjct: 3 DNDTIVAQATPPGRGGVGILRISGLKAREVAETVLGKL-PKPRYADYLPFKDADGGVLDQ 61 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 G+ + FP P SFTGED E HGG +++ +L+ + +P LR+A PGEFS RAF N K+ Sbjct: 62 GIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKL 121 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL +AE++ADLI + +E R ++ + G S+ ++ LTH+R ++EA +DF +EE Sbjct: 122 DLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE- 180 Query: 184 VQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 + S ++ LND++ D+ + ++ + G ++R G K+VI G NAGKSSL NALA Sbjct: 181 IDFLSDGKIEAQLNDVI---ADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+E AD Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 297 Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDHL---I 343 +L + + + + P + + K+D+ +E H + Sbjct: 298 RVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRL 357 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401 S+ TGEG+E L N +K + + + +RHL L Q +L+ A L G Sbjct: 358 SARTGEGVEVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG 416 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LRLA +L +ITG + LL IFS FCIGK Sbjct: 417 -ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454 >gi|157163187|ref|YP_001460505.1| tRNA modification GTPase TrmE [Escherichia coli HS] gi|194435686|ref|ZP_03067789.1| tRNA modification GTPase TrmE [Escherichia coli 101-1] gi|218697429|ref|YP_002405096.1| tRNA modification GTPase TrmE [Escherichia coli 55989] gi|253775659|ref|YP_003038490.1| tRNA modification GTPase TrmE [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254163658|ref|YP_003046766.1| tRNA modification GTPase TrmE [Escherichia coli B str. REL606] gi|297520056|ref|ZP_06938442.1| tRNA modification GTPase TrmE [Escherichia coli OP50] gi|307313225|ref|ZP_07592850.1| tRNA modification GTPase TrmE [Escherichia coli W] gi|309795744|ref|ZP_07690159.1| tRNA modification GTPase TrmE [Escherichia coli MS 145-7] gi|312972002|ref|ZP_07786176.1| tRNA modification GTPase TrmE [Escherichia coli 1827-70] gi|331655368|ref|ZP_08356367.1| tRNA modification GTPase TrmE [Escherichia coli M718] gi|331670551|ref|ZP_08371390.1| tRNA modification GTPase TrmE [Escherichia coli TA271] gi|166991108|sp|A8A6G8|MNME_ECOHS RecName: Full=tRNA modification GTPase mnmE gi|254811477|sp|B7L851|MNME_ECO55 RecName: Full=tRNA modification GTPase mnmE gi|157068867|gb|ABV08122.1| tRNA modification GTPase TrmE [Escherichia coli HS] gi|194425229|gb|EDX41213.1| tRNA modification GTPase TrmE [Escherichia coli 101-1] gi|218354161|emb|CAV00765.1| GTPase [Escherichia coli 55989] gi|242379246|emb|CAQ34051.1| GTP-binding protein with a role in modification of tRNA, subunit of complex involved in modification of tRNA [Escherichia coli BL21(DE3)] gi|253326703|gb|ACT31305.1| tRNA modification GTPase TrmE [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975559|gb|ACT41230.1| tRNA modification GTPase [Escherichia coli B str. REL606] gi|253979715|gb|ACT45385.1| tRNA modification GTPase [Escherichia coli BL21(DE3)] gi|306906908|gb|EFN37417.1| tRNA modification GTPase TrmE [Escherichia coli W] gi|308120623|gb|EFO57885.1| tRNA modification GTPase TrmE [Escherichia coli MS 145-7] gi|310334379|gb|EFQ00584.1| tRNA modification GTPase TrmE [Escherichia coli 1827-70] gi|315063012|gb|ADT77339.1| GTPase [Escherichia coli W] gi|320201266|gb|EFW75847.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Escherichia coli EC4100B] gi|323380926|gb|ADX53194.1| tRNA modification GTPase TrmE [Escherichia coli KO11] gi|323939230|gb|EGB35443.1| tRNA modification GTPase TrmE [Escherichia coli E482] gi|323959772|gb|EGB55422.1| tRNA modification GTPase TrmE [Escherichia coli H489] gi|323971184|gb|EGB66430.1| tRNA modification GTPase TrmE [Escherichia coli TA007] gi|331047383|gb|EGI19461.1| tRNA modification GTPase TrmE [Escherichia coli M718] gi|331062613|gb|EGI34533.1| tRNA modification GTPase TrmE [Escherichia coli TA271] Length = 454 Score = 273 bits (698), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 169/459 (36%), Positives = 256/459 (55%), Gaps = 29/459 (6%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63 + +TI A +T + I+R+SG +V E + K P PR A F DG +LD+ Sbjct: 3 DNDTIVAQATPPGRGGVGILRISGFKAREVAETVLGKL-PKPRYADYLPFKDADGSVLDQ 61 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 G+ + FP P SFTGED E HGG +++ +L+ + +P LR+A PGEFS RAF N K+ Sbjct: 62 GIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKL 121 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL +AE++ADLI + +E R ++ + G S+ ++ LTH+R ++EA +DF +EE Sbjct: 122 DLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE- 180 Query: 184 VQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 + S ++ LND++ D+ + ++ + G ++R G K+VI G NAGKSSL NALA Sbjct: 181 IDFLSDGKIEAQLNDVI---ADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+E AD Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 297 Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDHL---I 343 +L + + + + P + + K+D+ +E H + Sbjct: 298 RVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRL 357 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401 S+ TGEG+E L N +K + + + +RHL L Q +L+ A L G Sbjct: 358 SARTGEGVEVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG 416 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LRLA +L +ITG + LL IFS FCIGK Sbjct: 417 -ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454 >gi|260072625|gb|ACX30523.1| tRNA modification GTPase [uncultured SUP05 cluster bacterium] Length = 447 Score = 273 bits (698), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 174/454 (38%), Positives = 259/454 (57%), Gaps = 21/454 (4%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+H + TI A+++ I I+R+SG C ++ + + P PR A FF DG Sbjct: 1 MSHNETTICALASSTGQGGIGIVRVSGARCIEIAKKMLGHV-PKPRYAHYGSFFNQDGVE 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +DKG+ + FP+P SFTGED EF HGGI V+ +LE + ++ A PGEFS+RAF N Sbjct: 60 IDKGVALFFPAPNSFTGEDVLEFQGHGGILVMRSLLESAMALGSIA-AEPGEFSKRAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GK+DLL+AE++ADLI + +E R ++ +SGE S L +R F+EA +DFS+ Sbjct: 119 GKMDLLQAEAVADLIDASSEQSARSALRSLSGEFSDQVNALTKALIELRVFVEATIDFSD 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + +S+ V + +K I S ++ + G I+R G +VI G NAGKSSL NAL Sbjct: 179 EE-IDFLNSEGVGLKVAHIKESIESILTSAEQGAILREGLTVVIAGKPNAGKSSLLNALT 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + + G + I DTAG+ ++D +E+EGIKR E+E AD Sbjct: 238 QRSSAIVTDIAGTTRDVLKETIHVNGMPLNIIDTAGLHVSEDKIEQEGIKRAHGEIERAD 297 Query: 301 LILLLKEINSKKE-----ISFPKNIDFIFIGTKSDLYSTYT------EEYDHLISSFTGE 349 ++L++ + K+ + K+ + I K DL S T L+ + + Sbjct: 298 VVLMVFDAQDKEPDLSILPAVVKDKPLLLIKNKVDLTSESTGMSKVNGRTQILLCAKRAD 357 Query: 350 GLEELINKIKSI--LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL-DIIA 406 GL+ L ++ I LS+ + + + + KRH+ L ++ + A L + D G +++A Sbjct: 358 GLDLLRQELSDIAGLSDTGEGV---LLARKRHIVALESALKSIHSA-LEQLDNGASELVA 413 Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E+LR A SLG ITG + LL IFS FCIGK Sbjct: 414 EDLRQAGQSLGSITGEFSSDDLLGEIFSSFCIGK 447 >gi|332559704|ref|ZP_08414026.1| tRNA modification GTPase TrmE [Rhodobacter sphaeroides WS8N] gi|332277416|gb|EGJ22731.1| tRNA modification GTPase TrmE [Rhodobacter sphaeroides WS8N] Length = 428 Score = 273 bits (698), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 165/438 (37%), Positives = 249/438 (56%), Gaps = 14/438 (3%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI+A+++ + ++++RLSGP + + P R A+LR +G +LD+ L Sbjct: 2 DTIYALASARGKAGVAVLRLSGPRSHEAVQAFGVPLPPL-RHAALRRLT-WNGEVLDEAL 59 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 +++F + SFTGE SAE H+HG A V+ +L L+ +P LR A GEF+RRA ENG++DL Sbjct: 60 VLLFGAGASFTGETSAELHLHGSPAAVSSVLRVLSGLPGLRAAEAGEFTRRALENGRLDL 119 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 + E LADLI +ETE QRR +M SG + +W L + +EA +DF+ +EDV Sbjct: 120 AQVEGLADLIDAETEAQRRQAMRVFSGAIGERAERWRADLIRAAALLEATIDFA-DEDVP 178 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 + EVL I L D+ + ++ E IR+G+++ I+G NAGKS+L NALA+++ A Sbjct: 179 VDVTPEVLTLIDGLLADLRREVDGSRIAERIRDGFEVAIVGAPNAGKSTLLNALARREAA 238 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL-ILL 304 I ++I GTTRDV+ + +DL+G V DTAG+RET D+VE GI+R + ADL + L Sbjct: 239 ITSEIAGTTRDVIEVRMDLDGLPVTFLDTAGLRETSDLVESLGIERAVTRAKAADLRVFL 298 Query: 305 LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364 L + I+ D + + K+DL +S TGEG+ EL+ I L Sbjct: 299 LDDSGPLSGITV--QADDLVVQGKADLRPGQGLR----LSGRTGEGVPELVAAIGERLLR 352 Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDIIAENLRLASVSLGKITGC 422 + +H+RH + + + +E A L ++ A++LR A SL + G Sbjct: 353 RTAG--AGSLTHERHRLAIERAIGAMESVRAELLRGQQHTELAADDLRRAIRSLDSLVGR 410 Query: 423 VDVEQLLDIIFSKFCIGK 440 VDVE LL IF+ FCIGK Sbjct: 411 VDVESLLGEIFASFCIGK 428 >gi|218707353|ref|YP_002414872.1| tRNA modification GTPase TrmE [Escherichia coli UMN026] gi|293407346|ref|ZP_06651268.1| tRNA modification GTPase mnmE [Escherichia coli FVEC1412] gi|298383087|ref|ZP_06992682.1| tRNA modification GTPase mnmE [Escherichia coli FVEC1302] gi|254811482|sp|B7NF24|MNME_ECOLU RecName: Full=tRNA modification GTPase mnmE gi|218434450|emb|CAR15378.1| GTPase [Escherichia coli UMN026] gi|291425637|gb|EFE98673.1| tRNA modification GTPase mnmE [Escherichia coli FVEC1412] gi|298276923|gb|EFI18441.1| tRNA modification GTPase mnmE [Escherichia coli FVEC1302] Length = 454 Score = 273 bits (698), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 168/459 (36%), Positives = 257/459 (55%), Gaps = 29/459 (6%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63 + +TI A +T + I+R+SG +V E + K P PR A F DG +LD+ Sbjct: 3 DNDTIVAQATPPGRGGVGILRISGLKAREVAETVLGKL-PKPRYADYLPFKDADGSVLDQ 61 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 G+ + FP P SFTGED E HGG +++ +L+ + +P+LR+A PGEFS RAF N K+ Sbjct: 62 GIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPDLRIARPGEFSERAFLNDKL 121 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL +AE++ADLI + +E R ++ + G S+ ++ LTH+R ++EA +DF +EE Sbjct: 122 DLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE- 180 Query: 184 VQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 + S ++ LND++ D+ + ++ + G ++R G K+VI G NAGKSSL NALA Sbjct: 181 IDFLSDGKIEAQLNDVI---ADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+E AD Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 297 Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDHL---I 343 +L + + + + P + + K+D+ +E H + Sbjct: 298 RVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRL 357 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401 S+ TGEG++ L N +K + + + +RHL L Q +L+ A L G Sbjct: 358 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG 416 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LRLA +L +ITG + LL IFS FCIGK Sbjct: 417 -ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454 >gi|197364644|ref|YP_002144281.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|254811495|sp|B5BIL9|MNME_SALPK RecName: Full=tRNA modification GTPase mnmE gi|197096121|emb|CAR61717.1| thiophene and furan oxidation protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 454 Score = 273 bits (698), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 167/459 (36%), Positives = 259/459 (56%), Gaps = 24/459 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+H +TI A +T + I+R+SG V + + K P PR A F +DG Sbjct: 1 MSH-NDTIVAQATPPGRGGVGILRISGLKARDVAQEVLGKL-PKPRYADYLPFKDVDGSA 58 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG +++ +L+ + +P +R+A PGEFS RAF N Sbjct: 59 LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + +E R ++ + G S+ ++ LTH+R ++EA +DF + Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + S ++ + + D+ + ++ + G ++R G K+VI G NAGKSSL NALA Sbjct: 179 EE-IDFLSDGKIEAQLNGVIADLDAVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + ++G + I DTAG+R+ +D VE+ GI+R + E+E AD Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDANDEVERIGIERAWQEIEQAD 297 Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTY---TEEYDH---LI 343 +L + + + + PKN+ + K+D+ +E H + Sbjct: 298 RVLFMVDGTTTDAVDPADIWPDFIARLPKNLPITVVRNKADITGETLGISEVNGHSLVRL 357 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401 S+ TGEG++ L N +K + + + + +RHL L++ +LE A L G Sbjct: 358 SARTGEGVDVLRNNLKQSMGFE-TNMEGGFLARRRHLQALAEAANHLEQGKAQLLGAWAG 416 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LRLA SL +ITG + LL IFS FCIGK Sbjct: 417 -ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 454 >gi|300896036|ref|ZP_07114596.1| tRNA modification GTPase TrmE [Escherichia coli MS 198-1] gi|300360060|gb|EFJ75930.1| tRNA modification GTPase TrmE [Escherichia coli MS 198-1] Length = 462 Score = 273 bits (698), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 168/459 (36%), Positives = 257/459 (55%), Gaps = 29/459 (6%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63 + +TI A +T + I+R+SG +V E + K P PR A F DG +LD+ Sbjct: 11 DNDTIVAQATPPGRGGVGILRISGLKAREVAETVLGKL-PKPRYADYLPFKDADGSVLDQ 69 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 G+ + FP P SFTGED E HGG +++ +L+ + +P+LR+A PGEFS RAF N K+ Sbjct: 70 GIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPDLRIARPGEFSERAFLNDKL 129 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL +AE++ADLI + +E R ++ + G S+ ++ LTH+R ++EA +DF +EE Sbjct: 130 DLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE- 188 Query: 184 VQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 + S ++ LND++ D+ + ++ + G ++R G K+VI G NAGKSSL NALA Sbjct: 189 IDFLSDGKIEAQLNDVI---ADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 245 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+E AD Sbjct: 246 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 305 Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDHL---I 343 +L + + + + P + + K+D+ +E H + Sbjct: 306 RVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRL 365 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401 S+ TGEG++ L N +K + + + +RHL L Q +L+ A L G Sbjct: 366 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG 424 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LRLA +L +ITG + LL IFS FCIGK Sbjct: 425 -ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 462 >gi|308051500|ref|YP_003915066.1| tRNA modification GTPase trmE [Ferrimonas balearica DSM 9799] gi|307633690|gb|ADN77992.1| tRNA modification GTPase trmE [Ferrimonas balearica DSM 9799] Length = 455 Score = 273 bits (698), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 169/461 (36%), Positives = 251/461 (54%), Gaps = 27/461 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M ++TI A +T + I+R+SGP V + K P R A F G++ Sbjct: 1 MTDHQDTIVAQATAPGQGGVGIVRVSGPLAETVAIHVLGKV-PKTRYAEYLPFKDDSGQV 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ ++F P SFTGED E HGG V++ ++ + +P LR A PGEFS RAF N Sbjct: 60 LDQGIALMFKGPNSFTGEDVLELQGHGGPVVLDMLIRRILTIPGLRTARPGEFSERAFLN 119 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + +E R +M+ + GE S Q +++LTH+R ++EA +DF + Sbjct: 120 DKLDLAQAEAIADLIEASSEQAVRSAMQSLQGEFSGQIHQLVEQLTHLRIYVEAAIDFPD 179 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE V S + D+ ++ ++ + G ++R G K+VI G NAGKSSL NALA Sbjct: 180 EE-VDFLSDGRIAGDLAAIETRLAEVRRSARQGALMREGMKVVIAGRPNAGKSSLLNALA 238 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + ++G + I DTAG+R+ D VE+ GI+R + E+ AD Sbjct: 239 GRESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWSEIAQAD 298 Query: 301 LILLL---KEINSKKEIS--------FPKNIDFIFIGTKSDLYSTYTEEYDH-------- 341 +LL+ E ++ + P+ + I K+DL E DH Sbjct: 299 RVLLMVDGTETDATDPAAIWPELIDRLPQEMGLTLIRNKADLTG---EAVDHGQAGGHPM 355 Query: 342 -LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKD 399 +S+ TGEG+E L +K+ + + + +RHL L Q +LE E Sbjct: 356 FRLSAKTGEGVEALKQHLKACMGYQ-GTTEGGFMARQRHLEALQQAALHLEQGKEQLEVF 414 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LRLA +L +ITG + LL IFS FCIGK Sbjct: 415 MAGELLAEELRLAQQALAEITGEFSSDDLLGRIFSSFCIGK 455 >gi|292901145|ref|YP_003540514.1| tRNA modification GTPase [Erwinia amylovora ATCC 49946] gi|291200993|emb|CBJ48132.1| probable tRNA modification GTPase [Erwinia amylovora ATCC 49946] Length = 454 Score = 273 bits (698), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 171/460 (37%), Positives = 256/460 (55%), Gaps = 26/460 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 MNH +TI A +T + I+R+SG +V + + K P PR A F DG Sbjct: 1 MNH-SDTIVAQATPPGRGGVGILRVSGNKAARVAQLLLGKL-PKPRHADYLPFCDADGST 58 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG +++ +L+ + +P LR+ANPGEFS RAF N Sbjct: 59 LDQGIALWFPGPHSFTGEDVLELQGHGGPVILDLLLKRILSLPGLRIANPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + +E R ++ + G S+ ++ LTH+R ++EA +DF + Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSAVNSLQGVFSTRVNHLVEALTHLRIYVEAAIDFPD 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + S ++ + + D+ + S+ + G ++R G K+VI G NAGKSSL NALA Sbjct: 179 EE-IDFLSDGKIEAQLHQVIADLDAVRSEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+E AD Sbjct: 238 GREAAIVTDIAGTTRDVLREHIQIDGMPLHIIDTAGLREASDEVERIGIERAWHEIEQAD 297 Query: 301 LILLL-----KEINSKKEI------SFPKNIDFIFIGTKSDLYS---TYTEEYDH---LI 343 +L + + EI P+ + + K+D+ +E H + Sbjct: 298 HVLFMVDGTTTDATDPAEIWPDFIARLPETLPVTVVRNKADITGEIREISEVNGHSLIRL 357 Query: 344 SSFTGEGLEELINKIKSILSNKFK-KLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDC 400 S+ TGEG+E L N +K LS + + + +RHL L +L+ L Sbjct: 358 SARTGEGIENLRNHLK--LSMGWHGSMEGGFLARRRHLQALELAATHLQQGKHQLLAARA 415 Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G +++AE LR+A +L +ITG + LL IFS FCIGK Sbjct: 416 G-ELLAEELRMAQQALSEITGEFSSDDLLGRIFSSFCIGK 454 >gi|290554|gb|AAA62057.1| 50 kD protein [Escherichia coli] Length = 454 Score = 273 bits (698), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 168/459 (36%), Positives = 256/459 (55%), Gaps = 29/459 (6%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63 + +TI A +T + I+R+SG +V E + K P PR A F DG +LD+ Sbjct: 3 DNDTIVAQATPPGRGGVGILRISGFKAREVAETVLGKL-PKPRYADYLPFKDADGSVLDQ 61 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 G+ + FP P SFTGED E HGG +++ +L+ + +P LR+A PGEFS RAF N K+ Sbjct: 62 GIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKL 121 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL +AE++ADLI + +E R ++ + G S+ ++ LTH+R ++EA +DF +EE Sbjct: 122 DLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE- 180 Query: 184 VQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 + S ++ LND++ D+ + ++ + G ++R G K+VI G NAGKSSL NALA Sbjct: 181 IDFLSDGKIEAQLNDVI---ADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+E AD Sbjct: 238 GREAAIVTDIAGTTRDVLRXXIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 297 Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDHL---I 343 +L + + + + P + + K+D+ +E H + Sbjct: 298 RVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRL 357 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401 S+ TGEG++ L N +K + + + +RHL L Q +L+ A L G Sbjct: 358 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG 416 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LRLA +L +ITG + LL IFS FCIGK Sbjct: 417 -ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454 >gi|293393716|ref|ZP_06638024.1| tRNA modification GTPase [Serratia odorifera DSM 4582] gi|291423760|gb|EFE96981.1| tRNA modification GTPase [Serratia odorifera DSM 4582] Length = 454 Score = 273 bits (698), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 170/454 (37%), Positives = 251/454 (55%), Gaps = 23/454 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + I+R+SG + QV + + K P PR A F DG LD+G+ Sbjct: 5 DTIVAQATPPGRGGVGILRISGRAAQQVAQTLLGKL-PKPRHADYLPFRDADGATLDQGI 63 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + FP P SFTGED E HGG +++ +L+ + +P +R+A PGEFS RAF N K+DL Sbjct: 64 ALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRVLALPGVRIARPGEFSERAFLNDKLDL 123 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E R +M + G SS Q ++ LTH+R ++EA +DF +EE + Sbjct: 124 AQAEAIADLIDASSEQAARSAMNSLQGAFSSRIHQLVEALTHLRIYVEAAIDFPDEE-ID 182 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S ++ + + ND+ S + + G ++R G K+VI G NAGKSSL NALA ++ A Sbjct: 183 FLSDGKIEAQLNGVMNDLDSVRVEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAA 242 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+E AD +L + Sbjct: 243 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAGDEVERIGIERAWNEIEQADRVLFM 302 Query: 306 -----KEINSKKEI------SFPKNIDFIFIGTKSDLYST---YTEEYDH---LISSFTG 348 E EI P + + K+D+ E H +S+ TG Sbjct: 303 VDGTTTEATEPGEIWPEFMARLPATLPITVVRNKADITGEPLGLKEVNGHSLIRLSARTG 362 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIA 406 +G+E L + +K + + + +RHL L Q ++L L G +++A Sbjct: 363 QGIEVLRDHLKQSMGFT-SNMEGGFLARRRHLQALEQAAQHLVQGKEQLVSAYAG-ELLA 420 Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E LRLA +L +ITG + LL IFS FCIGK Sbjct: 421 EELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454 >gi|33594714|ref|NP_882358.1| tRNA modification GTPase TrmE [Bordetella pertussis Tohama I] gi|46577402|sp|Q7VSR5|MNME_BORPE RecName: Full=tRNA modification GTPase mnmE gi|33564790|emb|CAE44118.1| putative tRNA modification GTPase [Bordetella pertussis Tohama I] gi|332384125|gb|AEE68972.1| tRNA modification GTPase TrmE [Bordetella pertussis CS] Length = 450 Score = 273 bits (698), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 171/439 (38%), Positives = 251/439 (57%), Gaps = 25/439 (5%) Query: 20 ISIIRLSGPSCFQVCEFICKKKKPF-PRKASLRYFFGLDGRILDKGLLIVFPSPESFTGE 78 I ++R+SGP ++ + + + P PR A F DG ++D+GL I F +P S+TGE Sbjct: 19 IGVVRISGPDLAELAQRLFGR--PLTPRHAHYLPFRAADGEVIDEGLAIYFRAPHSYTGE 76 Query: 79 DSAEFHVHGGIAVVNGILEELAKMPN---LRLANPGEFSRRAFENGKIDLLEAESLADLI 135 D E HGG AV+ IL + + LR A PGEF+RRAF N ++DL +AE++ADLI Sbjct: 77 DVLELQGHGGPAVLRRILARCLQAGHDLGLRPAEPGEFTRRAFLNERLDLAQAEAVADLI 136 Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED--VQNFSSKEVL 193 + +E R +M +SGE S D++ H+R +EA LDF EEE ++ + ++ L Sbjct: 137 DASSEAAARGAMASLSGEFSQRVNDLSDRIIHLRMLVEATLDFPEEEIDFLEKYQARPTL 196 Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253 L +D+ + I+Q + G I+R G +V+ G N GKSSL NALA D+AIVT I GT Sbjct: 197 Q---ALTHDLDTLIAQARQGVILREGLHVVLAGKPNVGKSSLLNALAGDDIAIVTPIAGT 253 Query: 254 TRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313 TRD + ++ ++G + I DTAG+R+TDD VE GI+RT+ E+E ADLIL L+++ + Sbjct: 254 TRDKVVQEIHIDGVPLHIVDTAGLRDTDDAVESIGIERTWKEIERADLILHLQDVTQPPD 313 Query: 314 -------ISFPKNIDFIFIGTKSDLY-STYTEEYDHL-ISSFTGEGLEELINKIKSILS- 363 P + + K DL + + + D L IS+ G GL+ L + + Sbjct: 314 HLDAQIVRRLPARTPVLNVFNKVDLLDAAFQGQPDSLAISARGGIGLDALRQHLLQLAGW 373 Query: 364 NKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LNEKDCGLDIIAENLRLASVSLGKITG 421 N + P+ + +RHL+ L Q ++LE+A+ E D LD+ AE LRLA +L ITG Sbjct: 374 NPGAESPWL--ARERHLHALQQAAQHLEIATEHAREDDRVLDLFAEELRLAHEALTGITG 431 Query: 422 CVDVEQLLDIIFSKFCIGK 440 + LL IFS FCIGK Sbjct: 432 KFTSDDLLGEIFSSFCIGK 450 >gi|292490141|ref|YP_003533036.1| tRNA modification GTPase trmE [Erwinia amylovora CFBP1430] gi|291555583|emb|CBA24183.1| tRNA modification GTPase trmE [Erwinia amylovora CFBP1430] Length = 474 Score = 273 bits (698), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 171/460 (37%), Positives = 256/460 (55%), Gaps = 26/460 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 MNH +TI A +T + I+R+SG +V + + K P PR A F DG Sbjct: 21 MNH-SDTIVAQATPPGRGGVGILRVSGNKAARVAQLLLGKL-PKPRHADYLPFCDADGST 78 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG +++ +L+ + +P LR+ANPGEFS RAF N Sbjct: 79 LDQGIALWFPGPHSFTGEDVLELQGHGGPVILDLLLKRILSLPGLRIANPGEFSERAFLN 138 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + +E R ++ + G S+ ++ LTH+R ++EA +DF + Sbjct: 139 DKLDLAQAEAIADLIDASSEQAARSAVNSLQGVFSTRVNHLVEALTHLRIYVEAAIDFPD 198 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + S ++ + + D+ + S+ + G ++R G K+VI G NAGKSSL NALA Sbjct: 199 EE-IDFLSDGKIEAQLHQVIADLDAVRSEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 257 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+E AD Sbjct: 258 GREAAIVTDIAGTTRDVLREHIQIDGMPLHIIDTAGLREASDEVERIGIERAWHEIEQAD 317 Query: 301 LILLL-----KEINSKKEI------SFPKNIDFIFIGTKSDLYS---TYTEEYDH---LI 343 +L + + EI P+ + + K+D+ +E H + Sbjct: 318 HVLFMVDGTTTDATDPAEIWPDFIARLPETLPVTVVRNKADITGEIREISEVNGHSLIRL 377 Query: 344 SSFTGEGLEELINKIKSILSNKFK-KLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDC 400 S+ TGEG+E L N +K LS + + + +RHL L +L+ L Sbjct: 378 SARTGEGIENLRNHLK--LSMGWHGSMEGGFLARRRHLQALELAATHLQQGKHQLLAARA 435 Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G +++AE LR+A +L +ITG + LL IFS FCIGK Sbjct: 436 G-ELLAEELRMAQQALSEITGEFSSDDLLGRIFSSFCIGK 474 >gi|56415716|ref|YP_152791.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|81361369|sp|Q5PKU1|MNME_SALPA RecName: Full=tRNA modification GTPase mnmE gi|56129973|gb|AAV79479.1| thiophene and furan oxidation protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] Length = 454 Score = 273 bits (697), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 167/459 (36%), Positives = 259/459 (56%), Gaps = 24/459 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+H +TI A +T + I+R+SG V + + K P PR A F +DG Sbjct: 1 MSH-NDTIVAQATPPGRGGVGILRISGLKARGVAQEVLGKL-PKPRYADYLPFKDVDGSA 58 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG +++ +L+ + +P +R+A PGEFS RAF N Sbjct: 59 LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + +E R ++ + G S+ ++ LTH+R ++EA +DF + Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + S ++ + + D+ + ++ + G ++R G K+VI G NAGKSSL NALA Sbjct: 179 EE-IDFLSDGKIEAQLNGVIADLDAVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + ++G + I DTAG+R+ +D VE+ GI+R + E+E AD Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDANDEVERIGIERAWQEIEQAD 297 Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTY---TEEYDH---LI 343 +L + + + + PKN+ + K+D+ +E H + Sbjct: 298 RVLFMVDGTTTDAVDPADIWPDFIARLPKNLPITVVRNKADITGETLGISEVNGHSLVRL 357 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401 S+ TGEG++ L N +K + + + + +RHL L++ +LE A L G Sbjct: 358 SARTGEGVDVLRNNLKQSMGFE-TNMEGGFLARRRHLQALAEAANHLEQGKAQLLGAWAG 416 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LRLA SL +ITG + LL IFS FCIGK Sbjct: 417 -ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 454 >gi|126738505|ref|ZP_01754210.1| tRNA modification GTPase [Roseobacter sp. SK209-2-6] gi|126720304|gb|EBA17010.1| tRNA modification GTPase [Roseobacter sp. SK209-2-6] Length = 428 Score = 273 bits (697), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 169/438 (38%), Positives = 249/438 (56%), Gaps = 14/438 (3%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLDGRILDKG 64 +TIFA+++ + +S+IRLSGP V IC P P K +R G +LD+ Sbjct: 2 DTIFALASAQGKAGVSVIRLSGPESLIVANRICHY--PLPEKGRGVRRIQDQQGEVLDEA 59 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 L++ F SPESFTGE+ EF VHG AVV+ +L L+ +LRLA PGEF+RRA E GK+D Sbjct: 60 LVLTFASPESFTGENVVEFQVHGSTAVVSAVLATLSDEADLRLAEPGEFTRRALEAGKLD 119 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L + E LADLI +ETE QR+ + +SG L L +W L S IE +DF+ +EDV Sbjct: 120 LSQVEGLADLIDAETEAQRKQAQVILSGGLGRLAERWRQDLIRAASLIEVTIDFA-DEDV 178 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + EV + + + D+ ++ E IR G+++ I+G N GKS+L NALA ++ Sbjct: 179 PVDVTPEVSSLLEGVSQDLQRETQGVQIAERIREGFEVAIIGAPNVGKSTLLNALAGREA 238 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AI ++ GTTRD++ + +DL G V + DTAG+RET+D VE GI E+ADL + Sbjct: 239 AITSEYAGTTRDIIEVRMDLSGLPVTLLDTAGLRETEDHVEGIGIALAKKRAEDADLRVF 298 Query: 305 LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364 L E + E++F I + K+DL ++ ++ IS +G GL+ L++ I L Sbjct: 299 LCEEDEDLELTFCSG--DIRLKPKADLR----DDKENSISGASGYGLDSLVSAISEEL-- 350 Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LNEKDCGLDIIAENLRLASVSLGKITGC 422 + + L + + RH ++ + L A L + D+ AE++R A +L + G Sbjct: 351 RKRSLQVGVATRVRHRETMTIALSSLRQAQNVLEQGPEFYDLAAEDMRSAIRALELLVGR 410 Query: 423 VDVEQLLDIIFSKFCIGK 440 V VE LLD IFS FC+GK Sbjct: 411 VGVENLLDEIFSSFCLGK 428 >gi|254295495|ref|YP_003061518.1| tRNA modification GTPase TrmE [Hirschia baltica ATCC 49814] gi|254044026|gb|ACT60821.1| tRNA modification GTPase TrmE [Hirschia baltica ATCC 49814] Length = 454 Score = 273 bits (697), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 158/451 (35%), Positives = 251/451 (55%), Gaps = 18/451 (3%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI----LD 62 TI A+++ + + +S+IRLSG ++ + + +K P RK +R F LD Sbjct: 5 TICALASASGKAGVSVIRLSGSKAGEILQLLTAQKLPSRRKLVIRLLFHPSDSAKRDQLD 64 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 + L+ P P SFTGED EFH+HGG A+V +++ RLA PGE++RRAFENG+ Sbjct: 65 EALVAFMPGPNSFTGEDVVEFHLHGGTAIVASVIDACLATKLCRLAEPGEYTRRAFENGR 124 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 +DL +AE++ DLI +ET+ QRR +M+ G + W L + ++A +DF +E+ Sbjct: 125 MDLTKAEAIGDLIDAETDAQRRQAMQQYDGAFHAQCLNWRSGLIDAMASLDAAIDFPDED 184 Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 DV + + L I + G +R+G+KI I+G NAGKS+L NAL + Sbjct: 185 DVPSGVDSRAYPLVKELITSIDLALENANAGLAVRDGFKIAIIGPPNAGKSTLINALTGR 244 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 D AIV+ I GTTRD++ + L+L GY+V +SDTAG+R+T D +E EG++R + +DL Sbjct: 245 DAAIVSSIAGTTRDIVEVRLELGGYVVWLSDTAGLRDTGDEIEAEGVRRALVRAAESDLR 304 Query: 303 LLLKEINSK-KEISFPKNIDFIFIGTKSDLYSTYTEEYD------HLISSFTGEGLEELI 355 + + + ++S ++ DF+ + K+DL ++ + + S + E + Sbjct: 305 IFMHGYDQPLPDLSLAQDGDFL-LANKADLSDGTPQDLNLSDLDKKVFSEKVSLKMSEDV 363 Query: 356 NKIK-----SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAENL 409 +I+ +++ + S +RH L T L+ A L E D D+IAE++ Sbjct: 364 KRIRVKLEQTVIDRMSTGASAPLVSRQRHKQLLLSTKENLQHAILAMENDFSADLIAEDI 423 Query: 410 RLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 RLA+ +GKITG +D E +LD IF +FCIGK Sbjct: 424 RLAARDVGKITGEIDSEDVLDRIFGEFCIGK 454 >gi|324008034|gb|EGB77253.1| tRNA modification GTPase TrmE [Escherichia coli MS 57-2] Length = 481 Score = 273 bits (697), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 168/459 (36%), Positives = 256/459 (55%), Gaps = 29/459 (6%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63 + +TI A +T + I+R+SG +V E + K P PR A F DG +LD+ Sbjct: 30 DNDTIVAQATPPGRGGVGILRISGLKAREVAETVLGKL-PKPRYADYLPFKDADGSVLDQ 88 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 G+ + FP P SFTGED E HGG +++ +L+ + +P LR+A PGEFS RAF N K+ Sbjct: 89 GIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKL 148 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL +AE++ADLI + +E R ++ + G S+ ++ LTH+R ++EA +DF +EE Sbjct: 149 DLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE- 207 Query: 184 VQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 + S ++ LND++ D+ + ++ + G ++R G K+VI G NAGKSSL NALA Sbjct: 208 IDFLSDGKIEAQLNDVI---ADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 264 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+E AD Sbjct: 265 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 324 Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDHL---I 343 +L + + + + P + + K+D+ +E H + Sbjct: 325 RVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRL 384 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401 S+ TGEG++ L N +K + + + +RHL L Q +L+ A L G Sbjct: 385 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG 443 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LRLA +L +ITG + LL IFS FCIGK Sbjct: 444 -ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 481 >gi|300925531|ref|ZP_07141405.1| tRNA modification GTPase TrmE [Escherichia coli MS 182-1] gi|300418356|gb|EFK01667.1| tRNA modification GTPase TrmE [Escherichia coli MS 182-1] Length = 478 Score = 273 bits (697), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 168/459 (36%), Positives = 256/459 (55%), Gaps = 29/459 (6%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63 + +TI A +T + I+R+SG +V E + K P PR A F DG +LD+ Sbjct: 27 DNDTIVAQATPPGRGGVGILRISGLKAREVAETVLGKL-PKPRYADYLPFKDADGSVLDQ 85 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 G+ + FP P SFTGED E HGG +++ +L+ + +P LR+A PGEFS RAF N K+ Sbjct: 86 GIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKL 145 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL +AE++ADLI + +E R ++ + G S+ ++ LTH+R ++EA +DF +EE Sbjct: 146 DLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE- 204 Query: 184 VQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 + S ++ LND++ D+ + ++ + G ++R G K+VI G NAGKSSL NALA Sbjct: 205 IDFLSDGKIEAQLNDVI---ADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 261 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+E AD Sbjct: 262 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 321 Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDHL---I 343 +L + + + + P + + K+D+ +E H + Sbjct: 322 RVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRL 381 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401 S+ TGEG++ L N +K + + + +RHL L Q +L+ A L G Sbjct: 382 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG 440 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LRLA +L +ITG + LL IFS FCIGK Sbjct: 441 -ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 478 >gi|301324999|ref|ZP_07218552.1| tRNA modification GTPase TrmE [Escherichia coli MS 78-1] gi|300848114|gb|EFK75874.1| tRNA modification GTPase TrmE [Escherichia coli MS 78-1] Length = 479 Score = 272 bits (696), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 168/459 (36%), Positives = 256/459 (55%), Gaps = 29/459 (6%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63 + +TI A +T + I+R+SG +V E + K P PR A F DG +LD+ Sbjct: 28 DNDTIVAQATPPGRGGVGILRISGLKAREVAETVLGKL-PKPRYADYLPFKDADGSVLDQ 86 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 G+ + FP P SFTGED E HGG +++ +L+ + +P LR+A PGEFS RAF N K+ Sbjct: 87 GIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKL 146 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL +AE++ADLI + +E R ++ + G S+ ++ LTH+R ++EA +DF +EE Sbjct: 147 DLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE- 205 Query: 184 VQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 + S ++ LND++ D+ + ++ + G ++R G K+VI G NAGKSSL NALA Sbjct: 206 IDFLSDGKIEAQLNDVI---ADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 262 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+E AD Sbjct: 263 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 322 Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDHL---I 343 +L + + + + P + + K+D+ +E H + Sbjct: 323 RVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRL 382 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401 S+ TGEG++ L N +K + + + +RHL L Q +L+ A L G Sbjct: 383 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG 441 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LRLA +L +ITG + LL IFS FCIGK Sbjct: 442 -ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 479 >gi|301028501|ref|ZP_07191740.1| tRNA modification GTPase TrmE [Escherichia coli MS 196-1] gi|299878448|gb|EFI86659.1| tRNA modification GTPase TrmE [Escherichia coli MS 196-1] Length = 454 Score = 272 bits (696), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 168/459 (36%), Positives = 257/459 (55%), Gaps = 29/459 (6%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63 + +TI A +T + I+R+SG +V E + K P PR A F DG +LD+ Sbjct: 3 DNDTIVAQATPPGRGGVGILRISGFKAREVAETVLGKL-PKPRYADYLPFKDADGSVLDQ 61 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 G+ + FP P SFTGED E HGG +++ +L+ + +P LR+A PGEFS RAF N K+ Sbjct: 62 GIALWFPGPNSFTGEDVLELQGHGGPMILDLLLKRILTIPGLRIARPGEFSERAFLNDKL 121 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL +AE++ADLI + +E R ++ + G S+ ++ LTH+R ++EA +DF +EE Sbjct: 122 DLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE- 180 Query: 184 VQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 + S ++ LND++ D+ + ++ + G ++R G K+VI G NAGKSSL NALA Sbjct: 181 IDFLSDGKIEAQLNDVI---ADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+E AD Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 297 Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDHL---I 343 +L + + + + P + + K+D+ +E H+ + Sbjct: 298 RVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHVLIRL 357 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401 S+ TGEG++ L N +K + + + +RHL L Q +L+ A L G Sbjct: 358 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG 416 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LRLA +L +ITG + LL IFS FCIGK Sbjct: 417 -ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454 >gi|320180048|gb|EFW54990.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Shigella boydii ATCC 9905] Length = 454 Score = 272 bits (696), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 168/459 (36%), Positives = 256/459 (55%), Gaps = 29/459 (6%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63 + +TI A +T + I+R+SG +V E + K P PR A F DG +LD+ Sbjct: 3 DNDTIVAQATPPGRGGVGILRISGLKAREVAETVLGKL-PKPRYADYLPFKDADGSVLDQ 61 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 G+ + FP P SFTGED E HGG +++ +L+ + +P LR+A PGEFS RAF N K+ Sbjct: 62 GIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKL 121 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL +AE++ADLI + +E R ++ + G S+ ++ LTH+R ++EA +DF +EE Sbjct: 122 DLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE- 180 Query: 184 VQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 + S ++ LND++ D+ + ++ + G ++R G K+VI G NAGKSSL NALA Sbjct: 181 IDFLSDGKIEAQLNDVI---ADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+E AD Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 297 Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDHL---I 343 +L + + + + P + + K+D+ +E H + Sbjct: 298 RVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRL 357 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401 S+ TGEG++ L N +K + + + +RHL L Q +L+ A L G Sbjct: 358 SARTGEGVDVLHNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG 416 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LRLA +L +ITG + LL IFS FCIGK Sbjct: 417 -ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454 >gi|24114984|ref|NP_709494.1| tRNA modification GTPase TrmE [Shigella flexneri 2a str. 301] gi|30065014|ref|NP_839185.1| tRNA modification GTPase TrmE [Shigella flexneri 2a str. 2457T] gi|110807604|ref|YP_691124.1| tRNA modification GTPase TrmE [Shigella flexneri 5 str. 8401] gi|46577445|sp|Q83PL3|MNME_SHIFL RecName: Full=tRNA modification GTPase mnmE gi|123146522|sp|Q0SYP6|MNME_SHIF8 RecName: Full=tRNA modification GTPase mnmE gi|24054236|gb|AAN45201.1| GTP-binding protein in thiophene and furan oxidation [Shigella flexneri 2a str. 301] gi|30043275|gb|AAP18996.1| GTP-binding protein in thiophene and furan oxidation [Shigella flexneri 2a str. 2457T] gi|110617152|gb|ABF05819.1| GTP-binding protein in thiophene and furan oxidation [Shigella flexneri 5 str. 8401] gi|281603067|gb|ADA76051.1| tRNA modification GTPase trmE [Shigella flexneri 2002017] gi|313647714|gb|EFS12162.1| tRNA modification GTPase TrmE [Shigella flexneri 2a str. 2457T] gi|332750527|gb|EGJ80936.1| tRNA modification GTPase TrmE [Shigella flexneri K-671] gi|332750698|gb|EGJ81106.1| tRNA modification GTPase TrmE [Shigella flexneri 4343-70] gi|332751721|gb|EGJ82119.1| tRNA modification GTPase TrmE [Shigella flexneri 2747-71] gi|332764077|gb|EGJ94314.1| tRNA modification GTPase TrmE [Shigella flexneri 2930-71] gi|332996037|gb|EGK15664.1| tRNA modification GTPase TrmE [Shigella flexneri VA-6] gi|332997083|gb|EGK16699.1| tRNA modification GTPase TrmE [Shigella flexneri K-218] gi|332997872|gb|EGK17480.1| tRNA modification GTPase TrmE [Shigella flexneri K-272] gi|333013208|gb|EGK32581.1| tRNA modification GTPase TrmE [Shigella flexneri K-304] gi|333013667|gb|EGK33032.1| tRNA modification GTPase TrmE [Shigella flexneri K-227] Length = 454 Score = 272 bits (696), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 168/459 (36%), Positives = 256/459 (55%), Gaps = 29/459 (6%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63 + +TI A +T + I+R+SG +V E + K P PR A F DG +LD+ Sbjct: 3 DNDTIVAQATPPGRGGVGILRISGFKAREVAETVLGKL-PKPRYADYLPFKDADGSVLDQ 61 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 G+ + FP P SFTGED E HGG +++ +L+ + +P LR+A PGEFS RAF N K+ Sbjct: 62 GIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKL 121 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL +AE++ADLI + +E R ++ + G S+ ++ LTH+R ++EA +DF +EE Sbjct: 122 DLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE- 180 Query: 184 VQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 + S ++ LND++ D+ + ++ + G ++R G K+VI G NAGKSSL NALA Sbjct: 181 IDFLSDGKIEAQLNDVM---ADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+E AD Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 297 Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDHL---I 343 +L + + + + P + + K+D+ +E H + Sbjct: 298 RVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRL 357 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401 S+ TGEG++ L N +K + + + +RHL L Q +L+ A L G Sbjct: 358 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG 416 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LRLA +L +ITG + LL IFS FCIGK Sbjct: 417 -ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454 >gi|315296896|gb|EFU56184.1| tRNA modification GTPase TrmE [Escherichia coli MS 16-3] Length = 475 Score = 272 bits (696), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 168/459 (36%), Positives = 256/459 (55%), Gaps = 29/459 (6%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63 + +TI A +T + I+R+SG +V E + K P PR A F DG +LD+ Sbjct: 24 DNDTIVAQATPPGRGGVGILRISGLKAREVAETVLGKL-PKPRYADYLPFKDADGSVLDQ 82 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 G+ + FP P SFTGED E HGG +++ +L+ + +P LR+A PGEFS RAF N K+ Sbjct: 83 GIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKL 142 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL +AE++ADLI + +E R ++ + G S+ ++ LTH+R ++EA +DF +EE Sbjct: 143 DLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE- 201 Query: 184 VQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 + S ++ LND++ D+ + ++ + G ++R G K+VI G NAGKSSL NALA Sbjct: 202 IDFLSDGKIEAQLNDVI---ADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 258 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+E AD Sbjct: 259 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 318 Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDHL---I 343 +L + + + + P + + K+D+ +E H + Sbjct: 319 RVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRL 378 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401 S+ TGEG++ L N +K + + + +RHL L Q +L+ A L G Sbjct: 379 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG 437 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LRLA +L +ITG + LL IFS FCIGK Sbjct: 438 -ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 475 >gi|170681108|ref|YP_001746036.1| tRNA modification GTPase TrmE [Escherichia coli SMS-3-5] gi|170767097|ref|ZP_02901550.1| tRNA modification GTPase TrmE [Escherichia albertii TW07627] gi|194431305|ref|ZP_03063598.1| tRNA modification GTPase TrmE [Shigella dysenteriae 1012] gi|218551237|ref|YP_002385029.1| tRNA modification GTPase TrmE [Escherichia fergusonii ATCC 35469] gi|218691995|ref|YP_002400207.1| tRNA modification GTPase TrmE [Escherichia coli ED1a] gi|300824308|ref|ZP_07104424.1| tRNA modification GTPase TrmE [Escherichia coli MS 119-7] gi|300903017|ref|ZP_07120959.1| tRNA modification GTPase TrmE [Escherichia coli MS 84-1] gi|301305947|ref|ZP_07212029.1| tRNA modification GTPase TrmE [Escherichia coli MS 124-1] gi|331649534|ref|ZP_08350620.1| tRNA modification GTPase TrmE [Escherichia coli M605] gi|331665357|ref|ZP_08366258.1| tRNA modification GTPase TrmE [Escherichia coli TA143] gi|331679805|ref|ZP_08380475.1| tRNA modification GTPase TrmE [Escherichia coli H591] gi|205829138|sp|B1LL33|MNME_ECOSM RecName: Full=tRNA modification GTPase mnmE gi|254811480|sp|B7N211|MNME_ECO81 RecName: Full=tRNA modification GTPase mnmE gi|254811485|sp|B7LK49|MNME_ESCF3 RecName: Full=tRNA modification GTPase mnmE gi|170124535|gb|EDS93466.1| tRNA modification GTPase TrmE [Escherichia albertii TW07627] gi|170518826|gb|ACB17004.1| tRNA modification GTPase TrmE [Escherichia coli SMS-3-5] gi|194420760|gb|EDX36836.1| tRNA modification GTPase TrmE [Shigella dysenteriae 1012] gi|218358779|emb|CAQ91437.1| GTPase [Escherichia fergusonii ATCC 35469] gi|218429559|emb|CAR10382.1| GTPase [Escherichia coli ED1a] gi|222035421|emb|CAP78166.1| tRNA modification GTPase trmE [Escherichia coli LF82] gi|281180761|dbj|BAI57091.1| GTP-binding protein [Escherichia coli SE15] gi|284923790|emb|CBG36888.1| probable tRNA modification GTPase [Escherichia coli 042] gi|300404923|gb|EFJ88461.1| tRNA modification GTPase TrmE [Escherichia coli MS 84-1] gi|300523195|gb|EFK44264.1| tRNA modification GTPase TrmE [Escherichia coli MS 119-7] gi|300838798|gb|EFK66558.1| tRNA modification GTPase TrmE [Escherichia coli MS 124-1] gi|312948274|gb|ADR29101.1| tRNA modification GTPase TrmE [Escherichia coli O83:H1 str. NRG 857C] gi|315254605|gb|EFU34573.1| tRNA modification GTPase TrmE [Escherichia coli MS 85-1] gi|320193747|gb|EFW68380.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Escherichia coli WV_060327] gi|323944179|gb|EGB40259.1| tRNA modification GTPase TrmE [Escherichia coli H120] gi|323965768|gb|EGB61219.1| tRNA modification GTPase TrmE [Escherichia coli M863] gi|324111604|gb|EGC05585.1| tRNA modification GTPase TrmE [Escherichia fergusonii B253] gi|327250849|gb|EGE62551.1| tRNA modification GTPase TrmE [Escherichia coli STEC_7v] gi|330908023|gb|EGH36542.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Escherichia coli AA86] gi|331042032|gb|EGI14176.1| tRNA modification GTPase TrmE [Escherichia coli M605] gi|331057867|gb|EGI29853.1| tRNA modification GTPase TrmE [Escherichia coli TA143] gi|331072977|gb|EGI44302.1| tRNA modification GTPase TrmE [Escherichia coli H591] gi|332083996|gb|EGI89203.1| tRNA modification GTPase TrmE [Shigella dysenteriae 155-74] gi|332084896|gb|EGI90079.1| tRNA modification GTPase TrmE [Shigella boydii 5216-82] Length = 454 Score = 272 bits (696), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 168/459 (36%), Positives = 256/459 (55%), Gaps = 29/459 (6%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63 + +TI A +T + I+R+SG +V E + K P PR A F DG +LD+ Sbjct: 3 DNDTIVAQATPPGRGGVGILRISGLKAREVAETVLGKL-PKPRYADYLPFKDADGSVLDQ 61 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 G+ + FP P SFTGED E HGG +++ +L+ + +P LR+A PGEFS RAF N K+ Sbjct: 62 GIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKL 121 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL +AE++ADLI + +E R ++ + G S+ ++ LTH+R ++EA +DF +EE Sbjct: 122 DLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE- 180 Query: 184 VQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 + S ++ LND++ D+ + ++ + G ++R G K+VI G NAGKSSL NALA Sbjct: 181 IDFLSDGKIEAQLNDVI---ADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+E AD Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 297 Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDHL---I 343 +L + + + + P + + K+D+ +E H + Sbjct: 298 RVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRL 357 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401 S+ TGEG++ L N +K + + + +RHL L Q +L+ A L G Sbjct: 358 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG 416 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LRLA +L +ITG + LL IFS FCIGK Sbjct: 417 -ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454 >gi|205354570|ref|YP_002228371.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|254811492|sp|B5RFY2|MNME_SALG2 RecName: Full=tRNA modification GTPase mnmE gi|205274351|emb|CAR39376.1| thiophene and furan oxidation protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326629706|gb|EGE36049.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 454 Score = 272 bits (696), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 167/459 (36%), Positives = 257/459 (55%), Gaps = 24/459 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+H +TI A +T + I+R+SG V + + K P PR A F +DG Sbjct: 1 MSH-NDTIVAQATPPGRGGVGILRISGLKARDVAQEVLGKL-PKPRHADYLPFKDVDGSA 58 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG +++ +L+ + +P +R+A PGEFS RAF N Sbjct: 59 LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + +E R ++ + G S+ ++ LTH+R ++EA +DF + Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + S ++ + + D+ + ++ + G ++R G K+VI G NAGKSSL NALA Sbjct: 179 EE-IDFLSDGKIEAQLNGVIADLDAVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + ++G + I DTAG+R+ D VE+ GI+R + E+E AD Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQAD 297 Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTY---TEEYDH---LI 343 +L + + + + PKN+ + K+D+ +E H + Sbjct: 298 RVLFMVDGTTTDAVDPADIWPDFIARLPKNLPITVVRNKADITGETLGISEVNGHSLVRL 357 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401 S+ TGEG++ L N +K + + + +RHL L++ +LE A L G Sbjct: 358 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALAEAAEHLEQGKAQLLGAWAG 416 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LRLA SL +ITG + LL IFS FCIGK Sbjct: 417 -ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 454 >gi|194223742|ref|XP_001503159.2| PREDICTED: similar to mitochondrial GTP binding protein 2 [Equus caballus] Length = 428 Score = 272 bits (696), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 160/436 (36%), Positives = 236/436 (54%), Gaps = 44/436 (10%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFF-GLDGRILDKG 64 TIFA+S+G I++IR SGP+ + + P PR A LR G LD+ Sbjct: 35 TIFALSSGQGRCGIAVIRTSGPASGHALRSLTAPRDVPPPRSACLRLLSDPRTGEPLDRA 94 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 L++ FP P+SFTGED AEFHVHGG AVV+G+L+ L +P LR A GEF+RRAF +GK+ Sbjct: 95 LVLWFPGPQSFTGEDCAEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFAHGKLS 154 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L E E LADLI +ETE QRR ++ + GEL L W + LT + +EA +DF E++++ Sbjct: 155 LTEVEGLADLIHAETEAQRRQALRQLDGELGHLCRSWAETLTKALAHVEAYIDFGEDDNL 214 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + + +++ L+ + +H+ + G+ +R+G +V+ G NAGKSSL N L++K V Sbjct: 215 EEGVLERADSEVRELEVALGAHLRDARRGQRLRSGAHVVVAGPPNAGKSSLVNLLSRKPV 274 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 +IV+ PGTTRDVL +DL G+ +SDTAG+RE VE+EG++R +V L+L Sbjct: 275 SIVSPEPGTTRDVLETPVDLAGFPALLSDTAGLREGVGPVEQEGVRRALPDVPP-HLLLF 333 Query: 305 LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364 L + + LE L ++ + + Sbjct: 334 LPDRGGAGWL------------------------------------LEALRKELAEVCGD 357 Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVD 424 P + RH +HL + L + KD L + AE LR+A L ++TG Sbjct: 358 PATGPPLL--TRARHQHHLQSCLDALGLYK-QAKD--LALAAEALRVARGHLTRLTGGGG 412 Query: 425 VEQLLDIIFSKFCIGK 440 E++LD+IF FC+GK Sbjct: 413 TEEILDLIFRDFCVGK 428 >gi|324018442|gb|EGB87661.1| tRNA modification GTPase TrmE [Escherichia coli MS 117-3] Length = 479 Score = 272 bits (696), Expect = 7e-71, Method: Compositional matrix adjust. Identities = 168/459 (36%), Positives = 256/459 (55%), Gaps = 29/459 (6%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63 + +TI A +T + I+R+SG +V E + K P PR A F DG +LD+ Sbjct: 28 DNDTIVAQATPPGRGGVGILRISGFKAREVAETVLGKL-PKPRYADYLPFKDADGSVLDQ 86 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 G+ + FP P SFTGED E HGG +++ +L+ + +P LR+A PGEFS RAF N K+ Sbjct: 87 GIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKL 146 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL +AE++ADLI + +E R ++ + G S+ ++ LTH+R ++EA +DF +EE Sbjct: 147 DLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE- 205 Query: 184 VQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 + S ++ LND++ D+ + ++ + G ++R G K+VI G NAGKSSL NALA Sbjct: 206 IDFLSDGKIEAQLNDVI---ADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 262 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+E AD Sbjct: 263 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 322 Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDHL---I 343 +L + + + + P + + K+D+ +E H + Sbjct: 323 RVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRL 382 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401 S+ TGEG++ L N +K + + + +RHL L Q +L+ A L G Sbjct: 383 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG 441 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LRLA +L +ITG + LL IFS FCIGK Sbjct: 442 -ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 479 >gi|16762483|ref|NP_458100.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143971|ref|NP_807313.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213052691|ref|ZP_03345569.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213424947|ref|ZP_03357697.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213580794|ref|ZP_03362620.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213865392|ref|ZP_03387511.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|21363008|sp|Q8Z2N8|MNME_SALTI RecName: Full=tRNA modification GTPase mnmE gi|25319370|pir||AE0957 thiophene and furan oxidation protein [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16504788|emb|CAD03153.1| thiophene and furan oxidation protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29139607|gb|AAO71173.1| thiophene and furan oxidation protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 454 Score = 272 bits (696), Expect = 7e-71, Method: Compositional matrix adjust. Identities = 167/459 (36%), Positives = 258/459 (56%), Gaps = 24/459 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+H +TI A +T + I+R+SG V + + K P PR A F +DG Sbjct: 1 MSH-NDTIVAQATPPGRGGVGILRISGLKARDVAQEVLGKL-PKPRYADYLPFKDVDGSA 58 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG +++ +L+ + +P +R+A PGEFS RAF N Sbjct: 59 LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + +E R ++ + G S+ ++ LTH+R ++EA +DF + Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + S ++ + + D+ + ++ + G ++R G K+VI G NAGKSSL NALA Sbjct: 179 EE-IDFLSDGKIEAQLNGVIADLDAVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + ++G + I DTAG+R+ +D VE+ GI+R + E+E AD Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDANDEVERIGIERAWQEIEQAD 297 Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTY---TEEYDH---LI 343 +L + + + + PKN+ + K+D+ +E H + Sbjct: 298 RVLFMVDGTTTDAVDPADIWPDFIARLPKNLPITVVRNKADITGETLGISEVNGHSLVRL 357 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401 S+ TGEG++ L N +K + + + +RHL L++ +LE A L G Sbjct: 358 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALAEAANHLEQGKAQLLGAWAG 416 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LRLA SL +ITG + LL IFS FCIGK Sbjct: 417 -ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 454 >gi|300940893|ref|ZP_07155419.1| tRNA modification GTPase TrmE [Escherichia coli MS 21-1] gi|300454323|gb|EFK17816.1| tRNA modification GTPase TrmE [Escherichia coli MS 21-1] Length = 478 Score = 272 bits (696), Expect = 8e-71, Method: Compositional matrix adjust. Identities = 168/459 (36%), Positives = 256/459 (55%), Gaps = 29/459 (6%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63 + +TI A +T + I+R+SG +V E + K P PR A F DG +LD+ Sbjct: 27 DNDTIVAQATPPGRGGVGILRISGLKAREVAETVLGKL-PKPRYADYLPFKDADGSVLDQ 85 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 G+ + FP P SFTGED E HGG +++ +L+ + +P LR+A PGEFS RAF N K+ Sbjct: 86 GIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKL 145 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL +AE++ADLI + +E R ++ + G S+ ++ LTH+R ++EA +DF +EE Sbjct: 146 DLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE- 204 Query: 184 VQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 + S ++ LND++ D+ + ++ + G ++R G K+VI G NAGKSSL NALA Sbjct: 205 IDFLSDGKIEAQLNDVI---ADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 261 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+E AD Sbjct: 262 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 321 Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDHL---I 343 +L + + + + P + + K+D+ +E H + Sbjct: 322 RVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRL 381 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401 S+ TGEG++ L N +K + + + +RHL L Q +L+ A L G Sbjct: 382 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG 440 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LRLA +L +ITG + LL IFS FCIGK Sbjct: 441 -ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 478 >gi|300947531|ref|ZP_07161709.1| tRNA modification GTPase TrmE [Escherichia coli MS 116-1] gi|300452880|gb|EFK16500.1| tRNA modification GTPase TrmE [Escherichia coli MS 116-1] Length = 460 Score = 272 bits (696), Expect = 8e-71, Method: Compositional matrix adjust. Identities = 168/459 (36%), Positives = 256/459 (55%), Gaps = 29/459 (6%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63 + +TI A +T + I+R+SG +V E + K P PR A F DG +LD+ Sbjct: 9 DNDTIVAQATPPGRGGVGILRISGFKAREVAETVLGKL-PKPRYADYLPFKDADGSVLDQ 67 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 G+ + FP P SFTGED E HGG +++ +L+ + +P LR+A PGEFS RAF N K+ Sbjct: 68 GIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKL 127 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL +AE++ADLI + +E R ++ + G S+ ++ LTH+R ++EA +DF +EE Sbjct: 128 DLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE- 186 Query: 184 VQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 + S ++ LND++ D+ + ++ + G ++R G K+VI G NAGKSSL NALA Sbjct: 187 IDFLSDGKIEAQLNDVI---ADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 243 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+E AD Sbjct: 244 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 303 Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDHL---I 343 +L + + + + P + + K+D+ +E H + Sbjct: 304 RVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRL 363 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401 S+ TGEG++ L N +K + + + +RHL L Q +L+ A L G Sbjct: 364 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG 422 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LRLA +L +ITG + LL IFS FCIGK Sbjct: 423 -ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 460 >gi|204928462|ref|ZP_03219661.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204321895|gb|EDZ07093.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 454 Score = 272 bits (695), Expect = 8e-71, Method: Compositional matrix adjust. Identities = 167/459 (36%), Positives = 258/459 (56%), Gaps = 24/459 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+H +TI A +T + I+R+SG V + + K P PR A F +DG Sbjct: 1 MSH-NDTIVAQATPPGRGGVGILRISGLKARDVAQEVLGKL-PKPRYADYLPFKDVDGSA 58 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG +++ +L+ + +P +R+A PGEFS RAF N Sbjct: 59 LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + +E R ++ + G S+ ++ LTH+R ++EA +DF + Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + S ++ + + D+ + ++ + G ++R G K+VI G NAGKSSL NALA Sbjct: 179 EE-IDFLSDGKIEAQLNGVIADLDAVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + ++G + I DTAG+R+ D VE+ GI+R + E+E AD Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQAD 297 Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTY---TEEYDH---LI 343 +L + + + + PKN+ + K+D+ +E H + Sbjct: 298 RVLFMVDGTTTDAVDPADIWPDFIARLPKNLPITVVRNKADITGETLGISEVNGHSLVRL 357 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401 S+ TGEG++ L N +K + + + + +RHL L++ +LE A L G Sbjct: 358 SARTGEGVDVLRNHLKQSMGFE-TNMEGGFLARRRHLQALAEAAEHLEQGKAQLLGAWAG 416 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LRLA SL +ITG + LL IFS FCIGK Sbjct: 417 -ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 454 >gi|300956287|ref|ZP_07168590.1| tRNA modification GTPase TrmE [Escherichia coli MS 175-1] gi|300316885|gb|EFJ66669.1| tRNA modification GTPase TrmE [Escherichia coli MS 175-1] Length = 462 Score = 272 bits (695), Expect = 9e-71, Method: Compositional matrix adjust. Identities = 168/459 (36%), Positives = 256/459 (55%), Gaps = 29/459 (6%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63 + +TI A +T + I+R+SG +V E + K P PR A F DG +LD+ Sbjct: 11 DNDTIVAQATPPGRGGVGILRISGFKAREVAETVLGKL-PKPRYADYLPFKDADGSVLDQ 69 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 G+ + FP P SFTGED E HGG +++ +L+ + +P LR+A PGEFS RAF N K+ Sbjct: 70 GIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKL 129 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL +AE++ADLI + +E R ++ + G S+ ++ LTH+R ++EA +DF +EE Sbjct: 130 DLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE- 188 Query: 184 VQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 + S ++ LND++ D+ + ++ + G ++R G K+VI G NAGKSSL NALA Sbjct: 189 IDFLSDGKIEAQLNDVI---ADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 245 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+E AD Sbjct: 246 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 305 Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDHL---I 343 +L + + + + P + + K+D+ +E H + Sbjct: 306 RVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRL 365 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401 S+ TGEG++ L N +K + + + +RHL L Q +L+ A L G Sbjct: 366 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG 424 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LRLA +L +ITG + LL IFS FCIGK Sbjct: 425 -ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 462 >gi|16131574|ref|NP_418162.1| GTPase [Escherichia coli str. K-12 substr. MG1655] gi|82546029|ref|YP_409976.1| tRNA modification GTPase TrmE [Shigella boydii Sb227] gi|89110306|ref|AP_004086.1| GTPase [Escherichia coli str. K-12 substr. W3110] gi|170022257|ref|YP_001727211.1| tRNA modification GTPase TrmE [Escherichia coli ATCC 8739] gi|170083208|ref|YP_001732528.1| GTPase [Escherichia coli str. K-12 substr. DH10B] gi|187732019|ref|YP_001882460.1| tRNA modification GTPase TrmE [Shigella boydii CDC 3083-94] gi|188493740|ref|ZP_03001010.1| tRNA modification GTPase TrmE [Escherichia coli 53638] gi|209921183|ref|YP_002295267.1| tRNA modification GTPase TrmE [Escherichia coli SE11] gi|218556273|ref|YP_002389187.1| tRNA modification GTPase TrmE [Escherichia coli IAI1] gi|238902797|ref|YP_002928593.1| GTPase [Escherichia coli BW2952] gi|254038925|ref|ZP_04872977.1| tRNA modification GTPase TrmE [Escherichia sp. 1_1_43] gi|256021275|ref|ZP_05435140.1| tRNA modification GTPase TrmE [Shigella sp. D9] gi|256025562|ref|ZP_05439427.1| tRNA modification GTPase TrmE [Escherichia sp. 4_1_40B] gi|293413161|ref|ZP_06655827.1| tRNA modification GTPase TrmE [Escherichia coli B354] gi|300917463|ref|ZP_07134124.1| tRNA modification GTPase TrmE [Escherichia coli MS 115-1] gi|301020896|ref|ZP_07184953.1| tRNA modification GTPase TrmE [Escherichia coli MS 69-1] gi|301644379|ref|ZP_07244380.1| tRNA modification GTPase TrmE [Escherichia coli MS 146-1] gi|307140407|ref|ZP_07499763.1| tRNA modification GTPase TrmE [Escherichia coli H736] gi|331644431|ref|ZP_08345560.1| tRNA modification GTPase TrmE [Escherichia coli H736] gi|331675198|ref|ZP_08375951.1| tRNA modification GTPase TrmE [Escherichia coli TA280] gi|331685431|ref|ZP_08386017.1| tRNA modification GTPase TrmE [Escherichia coli H299] gi|332282504|ref|ZP_08394917.1| tRNA modification GTPase TrmE [Shigella sp. D9] gi|2851487|sp|P25522|MNME_ECOLI RecName: Full=tRNA modification GTPase mnmE gi|123558283|sp|Q31UW0|MNME_SHIBS RecName: Full=tRNA modification GTPase mnmE gi|189036202|sp|B1IX32|MNME_ECOLC RecName: Full=tRNA modification GTPase mnmE gi|205829137|sp|B1X9T5|MNME_ECODH RecName: Full=tRNA modification GTPase mnmE gi|254811481|sp|B7M559|MNME_ECO8A RecName: Full=tRNA modification GTPase mnmE gi|254811483|sp|B6I3T9|MNME_ECOSE RecName: Full=tRNA modification GTPase mnmE gi|254811497|sp|B2TUS2|MNME_SHIB3 RecName: Full=tRNA modification GTPase mnmE gi|259495841|sp|C4ZYY4|MNME_ECOBW RecName: Full=tRNA modification GTPase mnmE gi|2367268|gb|AAC76729.1| GTPase [Escherichia coli str. K-12 substr. MG1655] gi|81247440|gb|ABB68148.1| ThdF [Shigella boydii Sb227] gi|85676337|dbj|BAE77587.1| GTPase [Escherichia coli str. K12 substr. W3110] gi|169757185|gb|ACA79884.1| tRNA modification GTPase TrmE [Escherichia coli ATCC 8739] gi|169891043|gb|ACB04750.1| GTPase [Escherichia coli str. K-12 substr. DH10B] gi|187429011|gb|ACD08285.1| tRNA modification GTPase TrmE [Shigella boydii CDC 3083-94] gi|188488939|gb|EDU64042.1| tRNA modification GTPase TrmE [Escherichia coli 53638] gi|209914442|dbj|BAG79516.1| GTP-binding protein [Escherichia coli SE11] gi|218363042|emb|CAR00681.1| GTPase [Escherichia coli IAI1] gi|226838890|gb|EEH70917.1| tRNA modification GTPase TrmE [Escherichia sp. 1_1_43] gi|238861389|gb|ACR63387.1| GTPase [Escherichia coli BW2952] gi|260451436|gb|ACX41858.1| tRNA modification GTPase TrmE [Escherichia coli DH1] gi|291468294|gb|EFF10789.1| tRNA modification GTPase TrmE [Escherichia coli B354] gi|300398391|gb|EFJ81929.1| tRNA modification GTPase TrmE [Escherichia coli MS 69-1] gi|300415307|gb|EFJ98617.1| tRNA modification GTPase TrmE [Escherichia coli MS 115-1] gi|301077320|gb|EFK92126.1| tRNA modification GTPase TrmE [Escherichia coli MS 146-1] gi|309704154|emb|CBJ03501.1| probable tRNA modification GTPase [Escherichia coli ETEC H10407] gi|315138291|dbj|BAJ45450.1| tRNA modification GTPase TrmE [Escherichia coli DH1] gi|315618588|gb|EFU99174.1| tRNA modification GTPase TrmE [Escherichia coli 3431] gi|320174820|gb|EFW49943.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Shigella dysenteriae CDC 74-1112] gi|320185529|gb|EFW60295.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Shigella flexneri CDC 796-83] gi|323934942|gb|EGB31320.1| tRNA modification GTPase TrmE [Escherichia coli E1520] gi|331036725|gb|EGI08951.1| tRNA modification GTPase TrmE [Escherichia coli H736] gi|331067643|gb|EGI39045.1| tRNA modification GTPase TrmE [Escherichia coli TA280] gi|331077802|gb|EGI49014.1| tRNA modification GTPase TrmE [Escherichia coli H299] gi|332089435|gb|EGI94539.1| tRNA modification GTPase TrmE [Shigella boydii 3594-74] gi|332104856|gb|EGJ08202.1| tRNA modification GTPase TrmE [Shigella sp. D9] gi|332345697|gb|AEE59031.1| tRNA modification GTPase TrmE [Escherichia coli UMNK88] Length = 454 Score = 272 bits (695), Expect = 9e-71, Method: Compositional matrix adjust. Identities = 168/459 (36%), Positives = 256/459 (55%), Gaps = 29/459 (6%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63 + +TI A +T + I+R+SG +V E + K P PR A F DG +LD+ Sbjct: 3 DNDTIVAQATPPGRGGVGILRISGFKAREVAETVLGKL-PKPRYADYLPFKDADGSVLDQ 61 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 G+ + FP P SFTGED E HGG +++ +L+ + +P LR+A PGEFS RAF N K+ Sbjct: 62 GIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKL 121 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL +AE++ADLI + +E R ++ + G S+ ++ LTH+R ++EA +DF +EE Sbjct: 122 DLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE- 180 Query: 184 VQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 + S ++ LND++ D+ + ++ + G ++R G K+VI G NAGKSSL NALA Sbjct: 181 IDFLSDGKIEAQLNDVI---ADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+E AD Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 297 Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDHL---I 343 +L + + + + P + + K+D+ +E H + Sbjct: 298 RVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRL 357 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401 S+ TGEG++ L N +K + + + +RHL L Q +L+ A L G Sbjct: 358 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG 416 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LRLA +L +ITG + LL IFS FCIGK Sbjct: 417 -ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454 >gi|307133252|ref|YP_003885268.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Dickeya dadantii 3937] gi|306530781|gb|ADN00712.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Dickeya dadantii 3937] Length = 454 Score = 272 bits (695), Expect = 9e-71, Method: Compositional matrix adjust. Identities = 168/467 (35%), Positives = 264/467 (56%), Gaps = 40/467 (8%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+H +TI A +T + I+R+SG + V + + K P PR A F DG + Sbjct: 1 MSH-TDTIVAQATPPGRGGVGILRISGRTAAAVAQAVLGKL-PKPRYADYLPFHDADGSV 58 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG +++ +L+ + +P++R+A PGEFS RAF N Sbjct: 59 LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRIVALPDVRIARPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + +E R ++ + G S+ Q ++ LTH+R ++EA +DF + Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSAVNSLQGVFSTRIHQLVEALTHLRIYVEAAIDFPD 178 Query: 181 EED--VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 EE + + + +LND++ D+ + ++ + G ++R G K+VI G NAGKSSL NA Sbjct: 179 EEIDFLSDGKIEAMLNDVI---GDLGAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNA 235 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 LA +D AIVTDI GTTRDVL + ++G + I DTAG+R+ D VE+ GI+R + E+E Sbjct: 236 LAGRDAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQ 295 Query: 299 ADLILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL---------YSTYTEE 338 AD +L + + + + PK + + K+D+ +TY+ Sbjct: 296 ADRVLFMVDGTTTDAMEPAAIWPEFMARLPKTLPITVVRNKADVTGEPLGIEDVNTYS-- 353 Query: 339 YDHLI--SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396 LI S+ TG+G++ L + +K + + +RHL L Q ++L+ + Sbjct: 354 ---LIRLSARTGDGVDLLRDHLKQSMGFT-SNTEGGFLARRRHLQALEQAAQHLQQG--H 407 Query: 397 EKDCGL---DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E+ G +++AE LRLA +L +ITG + LL IFS FCIGK Sbjct: 408 EQLVGAYAGELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454 >gi|224585642|ref|YP_002639441.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|254811494|sp|C0Q2L4|MNME_SALPC RecName: Full=tRNA modification GTPase mnmE gi|224470170|gb|ACN48000.1| tRNA modification GTPase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 454 Score = 272 bits (695), Expect = 9e-71, Method: Compositional matrix adjust. Identities = 167/459 (36%), Positives = 257/459 (55%), Gaps = 24/459 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+H +TI A +T + I+R+SG V + + K P PR A F +DG Sbjct: 1 MSH-NDTIVAQATPPGRGGVGILRISGLKARDVAQEVLGKL-PKPRYADYLPFKDVDGSA 58 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG +++ +L+ + +P +R+A PGEFS RAF N Sbjct: 59 LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + +E R ++ + G S+ ++ LTH+R ++EA +DF + Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + S ++ + + D+ + ++ + G ++R G K+VI G NAGKSSL NALA Sbjct: 179 EE-IDFLSDGKIEAQLNGVIADLDAVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + ++G + I DTAG+R+ D VE+ GI+R + E+E AD Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQAD 297 Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTY---TEEYDH---LI 343 +L + + + + PKN+ + K+D+ +E H + Sbjct: 298 RVLFMVDGTTTDAVDPADIWPDFIARLPKNLPITVVRNKADITGETLGISEVNGHSLVRL 357 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401 S+ TGEG++ L N +K + + + +RHL L++ +LE A L G Sbjct: 358 SARTGEGVDVLRNHLKQSMGFDI-NMEGGFLARRRHLQALAEAAEHLEQGKAQLLGAWAG 416 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LRLA SL +ITG + LL IFS FCIGK Sbjct: 417 -ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 454 >gi|215489046|ref|YP_002331477.1| tRNA modification GTPase TrmE [Escherichia coli O127:H6 str. E2348/69] gi|312967884|ref|ZP_07782096.1| tRNA modification GTPase TrmE [Escherichia coli 2362-75] gi|254811475|sp|B7UMH3|MNME_ECO27 RecName: Full=tRNA modification GTPase mnmE gi|215267118|emb|CAS11565.1| GTPase [Escherichia coli O127:H6 str. E2348/69] gi|312287445|gb|EFR15353.1| tRNA modification GTPase TrmE [Escherichia coli 2362-75] Length = 454 Score = 272 bits (695), Expect = 9e-71, Method: Compositional matrix adjust. Identities = 168/459 (36%), Positives = 256/459 (55%), Gaps = 29/459 (6%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63 + +TI A +T + I+R+SG +V E + K P PR A F DG +LD+ Sbjct: 3 DNDTIVAQATPPGRGGVGILRISGLKAREVAETVLGKL-PKPRYADYLPFKDADGSVLDQ 61 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 G+ + FP P SFTGED E HGG +++ +L+ + +P LR+A PGEFS RAF N K+ Sbjct: 62 GIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKL 121 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL +AE++ADLI + +E R ++ + G S+ ++ LTH+R ++EA +DF +EE Sbjct: 122 DLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE- 180 Query: 184 VQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 + S ++ LND++ D+ + ++ + G ++R G K+VI G NAGKSSL NALA Sbjct: 181 IDFLSDGKIEAQLNDVI---ADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+E AD Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 297 Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDHL---I 343 +L + + + + P + + K+D+ +E H + Sbjct: 298 RVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSELNGHALIRL 357 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401 S+ TGEG++ L N +K + + + +RHL L Q +L+ A L G Sbjct: 358 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG 416 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LRLA +L +ITG + LL IFS FCIGK Sbjct: 417 -ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454 >gi|52843194|ref|YP_096993.1| tRNA modification GTPase TrmE [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|81823314|sp|Q5ZR82|MNME_LEGPH RecName: Full=tRNA modification GTPase mnmE gi|52630305|gb|AAU29046.1| GTP binding protein in thiophene and furan oxidation (GTPase) [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 446 Score = 272 bits (695), Expect = 9e-71, Method: Compositional matrix adjust. Identities = 166/450 (36%), Positives = 262/450 (58%), Gaps = 22/450 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A++T + I+R+SGP+ + + + K PR A+ + + +LD+GL Sbjct: 4 DTIVAIATPPGRGGVGIVRISGPNAYAIALCLNGNKALQPRLATFCSLYKGNNEVLDQGL 63 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 ++ F P SFTGED E HG V++ +++E + RLA PGEFS RAF N KIDL Sbjct: 64 VLYFKGPHSFTGEDVIEIQAHGSPVVLDLLIKE-SIAAGARLARPGEFSERAFLNDKIDL 122 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED-- 183 ++AE++ADLI + ++ R++++ + G+ S Q ++L ++R ++EA +DF EEE Sbjct: 123 IQAEAIADLIQASSDTAARMALKSLQGDFSKKINQLNEELIYLRMYVEAAIDFPEEEIDF 182 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 + + + ++L I+ DI S +QG L +R G +VI G NAGKS+L N LA +D Sbjct: 183 LNDGNVSQLLQKIIGRLEDIRSQANQGVL---LREGLSLVIAGRPNAGKSTLINNLAGRD 239 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303 VAIVT+I GTTRD++ + L+ + I DTAG+R++DD+VEKEGIKR + E++ AD +L Sbjct: 240 VAIVTEIAGTTRDIMREHILLDDIPLHIIDTAGLRDSDDLVEKEGIKRAWQELKRADCVL 299 Query: 304 LLKEINSKKE---------ISFPKNIDFIFIGTKSDL--YSTYTEEYDHLISSFTGEGLE 352 L+ +IN+ + ++ P I I + K D + +E+ +S+ TGEGL+ Sbjct: 300 LVVDINNPDQQNSLLNELRLTLPNKIPIITVYNKIDTTKLTAKCDEHTVYLSAKTGEGLD 359 Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL--EMASLNEKDCGLDIIAENLR 410 EL IK ++ ++ + +RHL L + L + L G +++AE+LR Sbjct: 360 ELKKVIKQVVG--YQPTEGQFLARRRHLQALDEAKALLLTGQSQLTNHKAG-ELLAEDLR 416 Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LA +L +ITG + LL IFS FCIGK Sbjct: 417 LAHQTLCEITGEFTSDDLLGKIFSSFCIGK 446 >gi|56698706|ref|YP_169083.1| tRNA modification GTPase TrmE [Ruegeria pomeroyi DSS-3] gi|81819880|sp|Q5LLM7|MNME_SILPO RecName: Full=tRNA modification GTPase mnmE gi|56680443|gb|AAV97109.1| tRNA modification GTPase TrmE [Ruegeria pomeroyi DSS-3] Length = 428 Score = 272 bits (695), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 161/437 (36%), Positives = 244/437 (55%), Gaps = 12/437 (2%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TIFA++T + +++IRLSGP + + P R S+R G LD G+ Sbjct: 2 DTIFALATAQGKAGVAVIRLSGPRAYHTACLLAGPDLP-SRGLSVRQLKDSQGARLDDGV 60 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 ++ F +P SFTGED AEF +HG +A +L L + LRLA PGEF+RRA ENGK+ L Sbjct: 61 VLTFAAPASFTGEDVAEFQIHGSLATTEAVLRCLGDLDGLRLAEPGEFTRRALENGKMSL 120 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 + E LADLI +ETE QR+ + ++G L L W KL + +EA +DF++EE V Sbjct: 121 PQVEGLADLIDAETEAQRKQAQAVLNGALGQLAEGWRAKLIRAAALLEAVIDFADEE-VP 179 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S EV + ++ D+ I+ ++ E IR G+++ I+G NAGKS+L N LA ++ A Sbjct: 180 TDVSPEVRALLAEVRADLEHEIAGVRIAERIRTGFEVAIIGPPNAGKSTLLNMLAGREAA 239 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 + +++ GTTRDV+ + +DL G V + DTAG+RET D+VE GI + ADL + L Sbjct: 240 LTSEVAGTTRDVIEVRMDLGGLPVTLLDTAGLRETGDLVEGMGIALARRRADQADLRVFL 299 Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365 E + D + + K+D + + IS TG+G+++L+ +I +L K Sbjct: 300 TEDVDAMGVEL--QPDDLHVLPKAD----QRPDTANAISGVTGQGVDQLVQRISDVL--K 351 Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLE-MASLNEKDCGL-DIIAENLRLASVSLGKITGCV 423 + I + +RH + + L+ ++ E L DI AE LR A +L + G + Sbjct: 352 TRSSSAGIATRERHRVAMKTALDALDRTGTVLESGPDLYDIAAEELRTAIRALESLVGRI 411 Query: 424 DVEQLLDIIFSKFCIGK 440 VE LLD IF+ FC+GK Sbjct: 412 GVETLLDEIFASFCLGK 428 >gi|301160376|emb|CBW19901.1| thiophene and furan oxidation protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] Length = 458 Score = 272 bits (695), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 167/459 (36%), Positives = 257/459 (55%), Gaps = 24/459 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+H +TI A +T + I+R+SG V + + K P PR A F +DG Sbjct: 5 MSH-NDTIVAQATPPGRGGVGILRISGLKARDVAQEVLGKL-PKPRYADYLPFKDVDGSA 62 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG +++ +L+ + +P +R+A PGEFS RAF N Sbjct: 63 LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 122 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + +E R ++ + G S+ ++ LTH+R ++EA +DF + Sbjct: 123 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 182 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + S ++ + + D+ + ++ + G ++R G K+VI G NAGKSSL NALA Sbjct: 183 EE-IDFLSDGKIEAQLNGVIADLDAVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 241 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + ++G + I DTAG+R+ D VE+ GI+R + E+E AD Sbjct: 242 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQAD 301 Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTY---TEEYDH---LI 343 +L + + + + PKN+ + K+D+ +E H + Sbjct: 302 RVLFMVDGTTTDAVDPADIWPDFIARLPKNLPITVVRNKADITGETLGISEVNGHSLVRL 361 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401 S+ TGEG++ L N +K + + + +RHL L++ +LE A L G Sbjct: 362 SARTGEGIDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALAEAAEHLEQGKAQLLGAWAG 420 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LRLA SL +ITG + LL IFS FCIGK Sbjct: 421 -ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 458 >gi|82779236|ref|YP_405585.1| tRNA modification GTPase TrmE [Shigella dysenteriae Sd197] gi|293417178|ref|ZP_06659805.1| tRNA modification GTPase TrmE [Escherichia coli B185] gi|309784244|ref|ZP_07678883.1| tRNA modification GTPase TrmE [Shigella dysenteriae 1617] gi|123561062|sp|Q329B1|MNME_SHIDS RecName: Full=tRNA modification GTPase mnmE gi|81243384|gb|ABB64094.1| GTP-binding protein [Shigella dysenteriae Sd197] gi|291431209|gb|EFF04202.1| tRNA modification GTPase TrmE [Escherichia coli B185] gi|308927751|gb|EFP73219.1| tRNA modification GTPase TrmE [Shigella dysenteriae 1617] Length = 454 Score = 272 bits (695), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 168/459 (36%), Positives = 256/459 (55%), Gaps = 29/459 (6%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63 + +TI A +T + I+R+SG +V E + K P PR A F DG +LD+ Sbjct: 3 DNDTIVAQATPPGRGGVGILRISGFKAREVAETVLGKL-PKPRYADYLPFKDADGSVLDQ 61 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 G+ + FP P SFTGED E HGG +++ +L+ + +P LR+A PGEFS RAF N K+ Sbjct: 62 GIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKL 121 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL +AE++ADLI + +E R ++ + G S+ ++ LTH+R ++EA +DF +EE Sbjct: 122 DLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE- 180 Query: 184 VQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 + S ++ LND++ D+ + ++ + G ++R G K+VI G NAGKSSL NALA Sbjct: 181 IDFLSDGKIEAQLNDVI---ADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+E AD Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 297 Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTY---TEEYDHL---I 343 +L + + + + P + + K+D+ +E H + Sbjct: 298 RVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGISEVNGHALIRL 357 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401 S+ TGEG++ L N +K + + + +RHL L Q +L+ A L G Sbjct: 358 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG 416 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LRLA +L +ITG + LL IFS FCIGK Sbjct: 417 -ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454 >gi|295095342|emb|CBK84432.1| tRNA modification GTPase trmE [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 454 Score = 272 bits (695), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 168/459 (36%), Positives = 255/459 (55%), Gaps = 24/459 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+H +TI A +T + I+R+SG +V E + K P PR A F DG Sbjct: 1 MSH-NDTIVAQATPPGRGGVGILRISGLKAREVAEAVLGKL-PKPRYADYLPFKDADGTP 58 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG +++ +L+ + +P LR+A PGEFS RAF N Sbjct: 59 LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIAKPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + +E R ++ + G S+ ++ LTH+R ++EA +DF + Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + S ++ + + ND+ + ++ + G ++R G K+VI G NAGKSSL NALA Sbjct: 179 EE-IDFLSDGKIEAQLNQVMNDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + ++G + I DTAG+R+ D VE+ GI+R + E+E AD Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQAD 297 Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTYTEEYD---H---LI 343 +L + + + + P + + K+D+ D H + Sbjct: 298 RVLFMVDGTTTDAVDPAEIWPDFIARLPAKLPITVVRNKADVTGETLGISDVNGHSLIRL 357 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401 S+ TGEG+E L + +K + + + +RHL L + R+LE A L G Sbjct: 358 SARTGEGVEALRSHLKQSMGFD-TSMEGGFLARRRHLQALEEAARHLEQGKAQLIGAWAG 416 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LRLA +L +ITG + LL IFS FCIGK Sbjct: 417 -ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454 >gi|205422290|sp|A9MJT6|MNME_SALAR RecName: Full=tRNA modification GTPase mnmE Length = 454 Score = 272 bits (695), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 166/459 (36%), Positives = 258/459 (56%), Gaps = 24/459 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+H +TI A +T + I+R+SG + +V + + K P PR A F DG Sbjct: 1 MSH-NDTIVAQATPPGRGGVGILRISGLNAKKVAQTVLGKL-PKPRYADYLPFKDADGAT 58 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG +++ +L+ + +P +R+A PGEFS RAF N Sbjct: 59 LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGVRIARPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + +E R ++ + G S+ ++ LTH+R ++EA +DF + Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + S ++ + + D+ + ++ + G ++R G K+VI G NAGKSSL NALA Sbjct: 179 EE-IDFLSDGKIEAQLNGVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + ++G + + DTAG+R+ D VE+ GI+R + E+E AD Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHVIDTAGLRDASDEVERIGIERAWQEIEQAD 297 Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTY---TEEYDH---LI 343 +L + + + + PKN+ + K+D+ +E H + Sbjct: 298 RVLFMVDGTTTDAVDPGDIWPDFIARLPKNLPITVVRNKADITGEMLGISEVNGHSLVRL 357 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401 S+ TGEG++ L N +K + + + +RHL L++ +LE A L G Sbjct: 358 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALAEAAEHLEQGKAQLLGAWAG 416 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LRLA SL +ITG + LL IFS FCIGK Sbjct: 417 -ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 454 >gi|323975226|gb|EGB70330.1| tRNA modification GTPase TrmE [Escherichia coli TW10509] Length = 454 Score = 272 bits (695), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 165/458 (36%), Positives = 254/458 (55%), Gaps = 27/458 (5%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63 + +TI A +T + I+R+SG +V E + K P PR A F DG +LD+ Sbjct: 3 DNDTIVAQATPPGRGGVGILRISGLKAREVAETVLGKL-PKPRYADYLPFKDADGSVLDQ 61 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 G+ + FP P SFTGED E HGG +++ +L+ + +P LR+A PGEFS RAF N K+ Sbjct: 62 GIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKL 121 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL +AE++ADLI + +E R ++ + G S+ ++ LTH+R ++EA +DF +EE Sbjct: 122 DLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE- 180 Query: 184 VQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 + S ++ LND++ D+ + ++ + G ++R G K+VI G NAGKSSL NALA Sbjct: 181 IDFLSDGKIEAQLNDVI---ADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+E AD Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 297 Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDHL---I 343 +L + + + + P + + K+D+ +E H + Sbjct: 298 RVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRL 357 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL- 402 S+ TGEG++ L N +K + + + +RHL L Q +L+ + Sbjct: 358 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKVQLLGAWAG 416 Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LRLA +L +ITG + LL IFS FCIGK Sbjct: 417 ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454 >gi|224827182|ref|ZP_03700277.1| tRNA modification GTPase TrmE [Lutiella nitroferrum 2002] gi|224600575|gb|EEG06763.1| tRNA modification GTPase TrmE [Lutiella nitroferrum 2002] Length = 450 Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 164/455 (36%), Positives = 256/455 (56%), Gaps = 22/455 (4%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 + + TI A++T + +IR+SG + I K P PR A+ F DG Sbjct: 3 LAYTPTTICAIATAPGRGGVGVIRVSGRGLLPFAQAISGGKTPQPRYATYSDFVAADGTA 62 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D GL++ FP P SFTGED E HGG V+N +L ++ RLA PGEF++RAF N Sbjct: 63 IDNGLMLYFPGPNSFTGEDVLELQGHGGPVVLNMLLSRCLEL-GARLAEPGEFTKRAFLN 121 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AES+ADLI + +E + +++ + G S Q +D+L +R +EA LDF + Sbjct: 122 DKLDLAQAESVADLIDASSETAAKSALKSLKGAFSHEIHQLVDELITLRMLVEATLDFPD 181 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + + + + ++ +S + + G I+R G +V++G N GKSSL NALA Sbjct: 182 EE-IDFLEAADARGKLGGVRARLSQVQATARQGAILREGMHVVLVGQPNVGKSSLLNALA 240 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 DVAIVTDI GTTRD L ++ ++G V + DTAG+R+TDD+VEK GI+RT+ V+ AD Sbjct: 241 GDDVAIVTDIAGTTRDTLREEIVIDGVPVHVIDTAGLRDTDDVVEKIGIERTWQAVQRAD 300 Query: 301 LILLLKEINSKKEIS---------FPKNIDFIFIGTKSDL---YSTYTEEYDHLI---SS 345 L+L+L ++S++ + P+ + +F+ K DL EE H + S+ Sbjct: 301 LVLVL--VDSREGVGAEVSAILAKLPERLPRVFVFNKVDLSGEAPGLAEEDGHPVVRLSA 358 Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDII 405 T G+E L K+ ++ + + + +RHL + + +L +A + +++ Sbjct: 359 RTLAGVELLRAKLLEMIGYRGASEGVFL-ARERHLDAIRRAAEHLALAETVWQQ--VELF 415 Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 AE LRLA +L ++TG + LL +IFS+FCIGK Sbjct: 416 AEELRLAQHALSEVTGEFTPDDLLGVIFSRFCIGK 450 >gi|15833895|ref|NP_312668.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. Sakai] gi|168748574|ref|ZP_02773596.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. EC4113] gi|168753599|ref|ZP_02778606.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. EC4401] gi|168759896|ref|ZP_02784903.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. EC4501] gi|168766197|ref|ZP_02791204.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. EC4486] gi|168772255|ref|ZP_02797262.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. EC4196] gi|168779932|ref|ZP_02804939.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. EC4076] gi|168786540|ref|ZP_02811547.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. EC869] gi|168798745|ref|ZP_02823752.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. EC508] gi|195936329|ref|ZP_03081711.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. EC4024] gi|208808040|ref|ZP_03250377.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. EC4206] gi|208814185|ref|ZP_03255514.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. EC4045] gi|208820072|ref|ZP_03260392.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. EC4042] gi|209395938|ref|YP_002273234.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. EC4115] gi|217324903|ref|ZP_03440987.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. TW14588] gi|254795709|ref|YP_003080546.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. TW14359] gi|261225860|ref|ZP_05940141.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Escherichia coli O157:H7 str. FRIK2000] gi|261258905|ref|ZP_05951438.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Escherichia coli O157:H7 str. FRIK966] gi|291285125|ref|YP_003501943.1| tRNA modification GTPase trmE [Escherichia coli O55:H7 str. CB9615] gi|21363001|sp|Q8XB41|MNME_ECO57 RecName: Full=tRNA modification GTPase mnmE gi|254811478|sp|B5YXB0|MNME_ECO5E RecName: Full=tRNA modification GTPase mnmE gi|13364116|dbj|BAB38064.1| GTP-binding protein in thiophene and furan oxidation [Escherichia coli O157:H7 str. Sakai] gi|187771576|gb|EDU35420.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. EC4196] gi|188016998|gb|EDU55120.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. EC4113] gi|189002302|gb|EDU71288.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. EC4076] gi|189359120|gb|EDU77539.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. EC4401] gi|189364418|gb|EDU82837.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. EC4486] gi|189369584|gb|EDU88000.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. EC4501] gi|189373460|gb|EDU91876.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. EC869] gi|189378836|gb|EDU97252.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. EC508] gi|208727841|gb|EDZ77442.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. EC4206] gi|208735462|gb|EDZ84149.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. EC4045] gi|208740195|gb|EDZ87877.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. EC4042] gi|209157338|gb|ACI34771.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. EC4115] gi|209754068|gb|ACI75341.1| hypothetical protein ECs4641 [Escherichia coli] gi|209754070|gb|ACI75342.1| hypothetical protein ECs4641 [Escherichia coli] gi|209754072|gb|ACI75343.1| hypothetical protein ECs4641 [Escherichia coli] gi|209754074|gb|ACI75344.1| hypothetical protein ECs4641 [Escherichia coli] gi|209754076|gb|ACI75345.1| hypothetical protein ECs4641 [Escherichia coli] gi|217321124|gb|EEC29548.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. TW14588] gi|254595109|gb|ACT74470.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Escherichia coli O157:H7 str. TW14359] gi|290764998|gb|ADD58959.1| tRNA modification GTPase trmE [Escherichia coli O55:H7 str. CB9615] gi|320191194|gb|EFW65844.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Escherichia coli O157:H7 str. EC1212] gi|320639432|gb|EFX09047.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. G5101] gi|320644875|gb|EFX13911.1| tRNA modification GTPase TrmE [Escherichia coli O157:H- str. 493-89] gi|320650139|gb|EFX18635.1| tRNA modification GTPase TrmE [Escherichia coli O157:H- str. H 2687] gi|320655487|gb|EFX23422.1| tRNA modification GTPase TrmE [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661113|gb|EFX28549.1| tRNA modification GTPase TrmE [Escherichia coli O55:H7 str. USDA 5905] gi|320666239|gb|EFX33245.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 str. LSU-61] gi|326337245|gb|EGD61080.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Escherichia coli O157:H7 str. 1044] gi|326341616|gb|EGD65405.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Escherichia coli O157:H7 str. 1125] Length = 454 Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 168/459 (36%), Positives = 256/459 (55%), Gaps = 29/459 (6%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63 + +TI A +T + I+R+SG +V E + K P PR A F DG +LD+ Sbjct: 3 DNDTIVAQATPPGRGGVGILRISGFKAREVAETVLGKL-PKPRYADYLPFKDADGSVLDQ 61 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 G+ + FP P SFTGED E HGG +++ +L+ + +P LR+A PGEFS RAF N K+ Sbjct: 62 GIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKL 121 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL +AE++ADLI + +E R ++ + G S+ ++ LTH+R ++EA +DF +EE Sbjct: 122 DLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE- 180 Query: 184 VQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 + S ++ LND++ D+ + ++ + G ++R G K+VI G NAGKSSL NALA Sbjct: 181 IDFLSDGKIEAQLNDVI---ADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+E AD Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 297 Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDHL---I 343 +L + + + + P + + K+D+ +E H + Sbjct: 298 RVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRL 357 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401 S+ TGEG++ L N +K + + + +RHL L Q +L+ A L G Sbjct: 358 SAKTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG 416 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LRLA +L +ITG + LL IFS FCIGK Sbjct: 417 -ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454 >gi|327395913|dbj|BAK13335.1| tRNA modification GTPase TrmE [Pantoea ananatis AJ13355] Length = 454 Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 169/459 (36%), Positives = 252/459 (54%), Gaps = 24/459 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+H +TI A +T + I+R+SGP +V + I K P PR A F DG + Sbjct: 1 MSH-SDTIVAQATSPGRGGVGILRISGPRAAEVAQQILGKL-PKPRYADYLSFNDSDGSV 58 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG +++ +L+ + +P LR+A PGEFS RAF N Sbjct: 59 LDQGIALWFPGPHSFTGEDVLELQGHGGPVILDLLLKRIVALPGLRIAQPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + +E R ++ + G S ++ LTH+R ++EA +DF + Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSAVNSLQGAFSVRINHLVEALTHLRIYVEAAIDFPD 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + S ++ + + +D+ + ++ K G ++R G K+VI G NAGKSSL NALA Sbjct: 179 EE-IDFLSDGKIEGQLNTVISDLDAVRAEAKQGSLLREGMKVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+E AD Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWHEIEQAD 297 Query: 301 LILLL-----------KEINSKKEISFPKNIDFIFIGTKSDLYST---YTEEYDHL---I 343 +L + EI P + + K+D+ T H + Sbjct: 298 RVLFMVDGTTTDATEPAEIWPDFVARLPPQLPITVVRNKADITGEARGLTNANGHALIRL 357 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401 S+ T EGL+ L + +K + + + +RHL L +LE + L G Sbjct: 358 SARTSEGLDTLRDHLKQTMGFA-DNMEGGFLARRRHLQALELAATHLEQGKSQLLGAWAG 416 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LRLA +L +ITG + LL IFS FCIGK Sbjct: 417 -ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454 >gi|15804300|ref|NP_290339.1| tRNA modification GTPase TrmE [Escherichia coli O157:H7 EDL933] gi|12518545|gb|AAG58903.1|AE005601_9 GTP-binding protein in thiophene and furan oxidation [Escherichia coli O157:H7 str. EDL933] Length = 454 Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 167/459 (36%), Positives = 256/459 (55%), Gaps = 29/459 (6%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63 + +TI A +T + I+R+SG +V E + K P PR A F DG +LD+ Sbjct: 3 DNDTIVAQATPPGRGGVGILRISGFKAREVAETVLGKL-PKPRYADYLPFKDADGSVLDQ 61 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 G+ + FP P SFTGEB E HGG +++ +L+ + +P LR+A PGEFS RAF N K+ Sbjct: 62 GIALWFPGPNSFTGEBVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKL 121 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL +AE++ADLI + +E R ++ + G S+ ++ LTH+R ++EA +DF +EE Sbjct: 122 DLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE- 180 Query: 184 VQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 + S ++ LND++ D+ + ++ + G ++R G K+VI G NAGKSSL NALA Sbjct: 181 IDFLSDGKIEAQLNDVI---ADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+E AD Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 297 Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDHL---I 343 +L + + + + P + + K+D+ +E H + Sbjct: 298 RVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRL 357 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401 S+ TGEG++ L N +K + + + +RHL L Q +L+ A L G Sbjct: 358 SAKTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG 416 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LRLA +L +ITG + LL IFS FCIGK Sbjct: 417 -ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454 >gi|319779149|ref|YP_004130062.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Taylorella equigenitalis MCE9] gi|317109173|gb|ADU91919.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Taylorella equigenitalis MCE9] Length = 443 Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 169/449 (37%), Positives = 259/449 (57%), Gaps = 18/449 (4%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62 HE +TI A++T I ++R+SG + P PR A+ FF DG +D Sbjct: 2 HE-DTIAAIATAPGRGGIGVVRVSGQELAGFARALTNGLDPKPRIATYTDFFDDDGAAID 60 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 GLL+ FP+P SFTGED E HGG ++N +L+ ++ RLA PGEF++RAF N K Sbjct: 61 NGLLLYFPAPHSFTGEDVLELQGHGGPVILNMVLKRCIEL-GARLAEPGEFTKRAFLNNK 119 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 IDL +AES+ADLI + +E R+++ + G S + + KL ++R +EA LDF EEE Sbjct: 120 IDLTQAESVADLIDATSEKAARMALRSLKGVFSDRIHELVSKLINLRMLVEATLDFPEEE 179 Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 + + + L + ++ + ISQ G I+R G K+ ++G N GKSSL NAL+ + Sbjct: 180 -LDFLEAADALGQLNEIRKLLEGIISQANQGTIMREGLKVALIGMPNVGKSSLLNALSGE 238 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 +VAIVTDI GTTRDV+ + ++G + DTAG+RET+D+VE+ GIK++ +++AD+ Sbjct: 239 EVAIVTDIAGTTRDVVKNFIHIDGVPIHFMDTAGLRETEDLVEQIGIKKSEKTLQDADVA 298 Query: 303 LLLKEINSKKEIS---------FPKNIDFIFIGTKSDLYSTYTEEYDHLI--SSFTGEGL 351 L+L+ + ++EIS P+++ I+I K DL + +++I S+ TG GL Sbjct: 299 LILQ--DPREEISHKLQEVLSRIPQSVKTIYIQNKIDLIDKQPAQDNNVIYLSAKTGAGL 356 Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411 + L + + + + + + RH+ LS+ LE+A GLD+ AE+LRL Sbjct: 357 DLLKKALLEVAGWEGESEGLFL-ARTRHMNALSEAKSQLEIAK-EIAYSGLDLFAEHLRL 414 Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A L ITG + LL IF++FCIGK Sbjct: 415 AQEHLNTITGEFTADDLLGEIFTRFCIGK 443 >gi|16767128|ref|NP_462743.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|21363010|sp|Q8ZKY3|MNME_SALTY RecName: Full=tRNA modification GTPase mnmE gi|16422417|gb|AAL22702.1| GTPase for tRNA modification and thiophene and furan oxidation [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|261248984|emb|CBG26841.1| thiophene and furan oxidation protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267996130|gb|ACY91015.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|312914972|dbj|BAJ38946.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321225561|gb|EFX50616.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323132204|gb|ADX19634.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332990693|gb|AEF09676.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 454 Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 167/459 (36%), Positives = 257/459 (55%), Gaps = 24/459 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+H +TI A +T + I+R+SG V + + K P PR A F +DG Sbjct: 1 MSH-NDTIVAQATPPGRGGVGILRISGLKARDVAQEVLGKL-PKPRYADYLPFKDVDGSA 58 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG +++ +L+ + +P +R+A PGEFS RAF N Sbjct: 59 LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + +E R ++ + G S+ ++ LTH+R ++EA +DF + Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + S ++ + + D+ + ++ + G ++R G K+VI G NAGKSSL NALA Sbjct: 179 EE-IDFLSDGKIEAQLNGVIADLDAVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + ++G + I DTAG+R+ D VE+ GI+R + E+E AD Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQAD 297 Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTY---TEEYDH---LI 343 +L + + + + PKN+ + K+D+ +E H + Sbjct: 298 RVLFMVDGTTTDAVDPADIWPDFIARLPKNLPITVVRNKADITGETLGISEVNGHSLVRL 357 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401 S+ TGEG++ L N +K + + + +RHL L++ +LE A L G Sbjct: 358 SARTGEGIDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALAEAAEHLEQGKAQLLGAWAG 416 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LRLA SL +ITG + LL IFS FCIGK Sbjct: 417 -ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 454 >gi|62182330|ref|YP_218747.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|168234430|ref|ZP_02659488.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168235485|ref|ZP_02660543.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168260372|ref|ZP_02682345.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|194444972|ref|YP_002043092.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194473009|ref|ZP_03078993.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194736496|ref|YP_002116786.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197262577|ref|ZP_03162651.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|207859069|ref|YP_002245720.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|75479674|sp|Q57HZ6|MNME_SALCH RecName: Full=tRNA modification GTPase mnmE gi|205422295|sp|A9MX84|MNME_SALPB RecName: Full=tRNA modification GTPase mnmE gi|254811491|sp|B5QUQ5|MNME_SALEP RecName: Full=tRNA modification GTPase mnmE gi|254811493|sp|B4SYB2|MNME_SALNS RecName: Full=tRNA modification GTPase mnmE gi|254811496|sp|B4TN11|MNME_SALSV RecName: Full=tRNA modification GTPase mnmE gi|62129963|gb|AAX67666.1| GTPase for tRNA modification and thiophene and furan oxidation [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|194403635|gb|ACF63857.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194459373|gb|EDX48212.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194711998|gb|ACF91219.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197240832|gb|EDY23452.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197291436|gb|EDY30788.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|205331633|gb|EDZ18397.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205350463|gb|EDZ37094.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206710872|emb|CAR35236.1| thiophene and furan oxidation protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|322617245|gb|EFY14150.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619067|gb|EFY15953.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625134|gb|EFY21962.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322630185|gb|EFY26956.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634389|gb|EFY31123.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635274|gb|EFY31989.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642902|gb|EFY39486.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322650576|gb|EFY46983.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656398|gb|EFY52690.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322661578|gb|EFY57801.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322661659|gb|EFY57878.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668227|gb|EFY64385.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672843|gb|EFY68951.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322674975|gb|EFY71061.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683665|gb|EFY79678.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687741|gb|EFY83710.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322716821|gb|EFZ08392.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323192044|gb|EFZ77279.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200526|gb|EFZ85604.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204951|gb|EFZ89936.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206694|gb|EFZ91651.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211767|gb|EFZ96600.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323218629|gb|EGA03336.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220030|gb|EGA04500.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224800|gb|EGA09065.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323232491|gb|EGA16593.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235266|gb|EGA19351.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323241054|gb|EGA25091.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323241396|gb|EGA25428.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248627|gb|EGA32557.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252074|gb|EGA35934.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323258622|gb|EGA42285.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262347|gb|EGA45905.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323268183|gb|EGA51659.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270597|gb|EGA54042.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326625578|gb|EGE31923.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 454 Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 167/459 (36%), Positives = 257/459 (55%), Gaps = 24/459 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+H +TI A +T + I+R+SG V + + K P PR A F +DG Sbjct: 1 MSH-NDTIVAQATPPGRGGVGILRISGLKARDVAQEVLGKL-PKPRYADYLPFKDVDGSA 58 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG +++ +L+ + +P +R+A PGEFS RAF N Sbjct: 59 LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + +E R ++ + G S+ ++ LTH+R ++EA +DF + Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + S ++ + + D+ + ++ + G ++R G K+VI G NAGKSSL NALA Sbjct: 179 EE-IDFLSDGKIEAQLNGVIADLDAVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + ++G + I DTAG+R+ D VE+ GI+R + E+E AD Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQAD 297 Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTY---TEEYDH---LI 343 +L + + + + PKN+ + K+D+ +E H + Sbjct: 298 RVLFMVDGTTTDAVDPADIWPDFIARLPKNLPITVVRNKADITGETLGISEVNGHSLVRL 357 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401 S+ TGEG++ L N +K + + + +RHL L++ +LE A L G Sbjct: 358 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALAEAAEHLEQGKAQLLGAWAG 416 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LRLA SL +ITG + LL IFS FCIGK Sbjct: 417 -ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 454 >gi|296105488|ref|YP_003615634.1| tRNA modification GTPase TrmE [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059947|gb|ADF64685.1| tRNA modification GTPase TrmE [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 454 Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 169/462 (36%), Positives = 259/462 (56%), Gaps = 30/462 (6%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+H +TI A +T + I+R+SG +V E + K P PR A F DG Sbjct: 1 MSH-NDTIVAQATPPGRGGVGILRISGLKAREVAEAVLGKL-PKPRYADYLPFKDSDGTP 58 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG +++ +L+ + +P LR+A PGEFS RAF N Sbjct: 59 LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIAKPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + +E R ++ + G S+ ++ LTH+R ++EA +DF + Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 178 Query: 181 EEDVQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 EE + S ++ LND++ D+ + ++ + G ++R G K+VI G NAGKSSL N Sbjct: 179 EE-IDFLSDGKIEAQLNDVM---TDLEAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLN 234 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 ALA ++ AIVTDI GTTRDVL + ++G + I DTAG+R+ D VE+ GI+R + E+E Sbjct: 235 ALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIE 294 Query: 298 NADLILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTY---TEEYDH-- 341 AD +L + + + + P + + K+D+ ++ H Sbjct: 295 QADRVLFMVDGTTTDAVDPAEIWPDFIARLPAKLPITVVRNKADVTGETLGISDVNGHSL 354 Query: 342 -LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEK 398 +S+ TGEG+++L N +K + + + +RHL L + R+LE A L Sbjct: 355 IRLSARTGEGVDDLRNHLKQSMGFD-TSMEGGFLARRRHLQALEEAARHLEQGKAQLIGA 413 Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G +++AE LRLA +L +ITG + LL IFS FCIGK Sbjct: 414 WAG-ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454 >gi|254510896|ref|ZP_05122963.1| tRNA modification GTPase TrmE [Rhodobacteraceae bacterium KLH11] gi|221534607|gb|EEE37595.1| tRNA modification GTPase TrmE [Rhodobacteraceae bacterium KLH11] Length = 386 Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 161/393 (40%), Positives = 233/393 (59%), Gaps = 11/393 (2%) Query: 50 LRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLAN 109 +R DG LD+GL++ F +P SFTGED AE +HG A VN +L L+ M +LRLA+ Sbjct: 3 VRTLAAPDGSRLDEGLVLTFQAPSSFTGEDVAELQIHGSSASVNAVLRCLSGMDDLRLAD 62 Query: 110 PGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR 169 PGEF+RRA ENGK+DL + E LADLI +ETE QR+ + ++G L +L W L Sbjct: 63 PGEFTRRALENGKMDLAQVEGLADLIDAETEAQRKQAQAILAGALGTLAEGWRRDLIRAA 122 Query: 170 SFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSN 229 S +EA +DF++EE V + EV I+ +K+D+S + ++ E IR G+++ I+G N Sbjct: 123 SLLEAVIDFADEE-VPTDVTPEVRALIVSVKDDLSREANGVQIAERIRAGFEVAIVGLPN 181 Query: 230 AGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGI 289 AGKS+L NALA ++ AI ++ GTTRDV+ + +DL G V + DTAG+R+T+D VE GI Sbjct: 182 AGKSTLLNALAGREAAITSEYAGTTRDVIEVRMDLAGLPVTLLDTAGLRDTEDHVENLGI 241 Query: 290 KRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGE 349 + E+ADL + L ++ + D I + KSDL E+ IS TG Sbjct: 242 ELARKRAESADLRVFLT--DTPDVLGIAVQPDDIHVLPKSDLR----EDTADGISGKTGY 295 Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL--EMASLNEKDCGLDIIAE 407 G++ LIN I +LSN+ I + +RH +++ + L +A L DI AE Sbjct: 296 GIDRLINNISCVLSNRTTS--HGIATRERHRIAMTKAIESLTAALAVLESGPDMYDIAAE 353 Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +R A +L + G +DVE LLD IF+ FC+GK Sbjct: 354 EMRTAIRALESLVGRIDVETLLDEIFASFCLGK 386 >gi|90023653|ref|YP_529480.1| tRNA modification GTPase TrmE [Saccharophagus degradans 2-40] gi|123395362|sp|Q21DG1|MNME_SACD2 RecName: Full=tRNA modification GTPase mnmE gi|89953253|gb|ABD83268.1| tRNA modification GTPase trmE [Saccharophagus degradans 2-40] Length = 456 Score = 271 bits (693), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 169/460 (36%), Positives = 262/460 (56%), Gaps = 35/460 (7%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 ETI A++T + IIR+SGP + + I P PR A F +G ILD+G+ Sbjct: 7 ETIAAIATAPGRGGVGIIRVSGPKALPIAQHILGIT-PKPRYAHYGDFCNANGDILDQGI 65 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + FP+P SFTGED E HGG +++ +L+ + + RLA PGEFS RAF N K+DL Sbjct: 66 ALYFPNPHSFTGEDVLELQGHGGPVILDMLLDAVVQA-GARLARPGEFSERAFLNDKLDL 124 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + ++ + ++ + GE S+ + +++L H+R ++E+ +DF EEE Sbjct: 125 AQAEAIADLIEASSQQAAKQALNSLKGEFSNKIHELVEQLIHLRMYVESAIDFPEEE--I 182 Query: 186 NFSSKEV----LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 +F S + LND++ + + ++Q + G ++R+G K+VI G NAGKSSL NALA+ Sbjct: 183 DFLSDGIVEGKLNDVI---DQTDAVLAQAQQGALLRDGMKVVIAGRPNAGKSSLLNALAE 239 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 KD+AIVT+I GTTRDVL + ++G + I DTAG+R++ D VE+ GI+R + E+E+AD Sbjct: 240 KDIAIVTNIAGTTRDVLREHIHIDGMPLHIIDTAGLRDSPDHVEQIGIERAWGEIESADR 299 Query: 302 ILLLKEINSKKEI-------------SFPKNIDFIFIGTKSDLYSTYTEEYDH-----LI 343 ILLL + ++ ++ K + I+ +ST D + Sbjct: 300 ILLLIDTTDNSQLDVNVHWPEFTSNAAYAKKLTVIYNKIDESGFSTTNHTSDAPYQTLPL 359 Query: 344 SSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDC 400 S+ TG GL+ L +KS++ + FS + +RH++ + Q YL L Sbjct: 360 SAKTGAGLDTLKAHLKSVMGFQSTTEGGFS--ARRRHIHAIEQAQNYLLTGREQLQLHTA 417 Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G +++AE+LR A L +ITG + LL IFS FCIGK Sbjct: 418 G-ELLAEDLRAAQNHLSEITGAFTPDDLLGKIFSSFCIGK 456 >gi|291615647|ref|YP_003518389.1| TrmE [Pantoea ananatis LMG 20103] gi|291150677|gb|ADD75261.1| TrmE [Pantoea ananatis LMG 20103] Length = 454 Score = 271 bits (693), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 169/459 (36%), Positives = 252/459 (54%), Gaps = 24/459 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+H +TI A +T + I+R+SGP +V + I K P PR A F DG + Sbjct: 1 MSH-SDTIVAQATPPGRGGVGILRISGPRAAEVAQQILGKL-PKPRYADYLSFNDSDGSV 58 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG +++ +L+ + +P LR+A PGEFS RAF N Sbjct: 59 LDQGIALWFPGPHSFTGEDVLELQGHGGPVILDLLLKRIVALPGLRIAQPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + +E R ++ + G S ++ LTH+R ++EA +DF + Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSAVNSLQGAFSVRINHLVEALTHLRIYVEAAIDFPD 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + S ++ + + +D+ + ++ K G ++R G K+VI G NAGKSSL NALA Sbjct: 179 EE-IDFLSDGKIEGQLNTVISDLDAVRAEAKQGSLLREGMKVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+E AD Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWHEIEQAD 297 Query: 301 LILLL-----------KEINSKKEISFPKNIDFIFIGTKSDLYST---YTEEYDHL---I 343 +L + EI P + + K+D+ T H + Sbjct: 298 RVLFMVDGTTTDATEPAEIWPDFVARLPPQLPITVVRNKADITGEARGLTNANGHALIRL 357 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401 S+ T EGL+ L + +K + + + +RHL L +LE + L G Sbjct: 358 SARTSEGLDTLRDHLKQTMGFA-DNMEGGFLARRRHLQALELAATHLEQGKSQLLGAWAG 416 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LRLA +L +ITG + LL IFS FCIGK Sbjct: 417 -ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454 >gi|205422419|sp|Q2WBH0|MNME_MAGMM RecName: Full=tRNA modification GTPase mnmE Length = 441 Score = 271 bits (693), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 166/444 (37%), Positives = 264/444 (59%), Gaps = 14/444 (3%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 ETI+A+++ A + I++ RLSG + K P PR+A G +LD GL Sbjct: 3 ETIYALASAAGRAGIAVWRLSGEGSGTALSALTGKPLPEPRRARRVRLRDGAGEVLDDGL 62 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 ++ FP+P SFTGED AE H+HGG AV + L ++ LR A PGEFSRRAF NGK+DL Sbjct: 63 VLWFPAPHSFTGEDVAELHLHGGRAVAAALTARLGEL-GLRPAEPGEFSRRAFLNGKLDL 121 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 AE++ADL+ +ET QRR ++ + G L+ L W L + +EA +DF++E D+ Sbjct: 122 TRAEAIADLVDAETAAQRRQALRQLDGGLAGLVEGWRSALVRAMAHLEAVIDFADE-DIP 180 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 + ++ + ++ L+ ++ H+ + + GE +R+G I ILG NAGKSSL N LA ++ A Sbjct: 181 DTLLEQSVGEVRSLRREMEVHLDERRNGERLRDGIHITILGAPNAGKSSLLNRLAGREAA 240 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IV+ GTTRDV+ + LDL G+ V ++DTAG+R++ +E EG++R ADL L + Sbjct: 241 IVSAQAGTTRDVIEVHLDLGGWPVIVADTAGLRDSACEIESEGVRRAADRAAKADLRLCV 300 Query: 306 --KEINSKKEISFPKNID--FIFIGTKSDLYSTYTEEYDH-----LISSFTGEGLEELIN 356 + + + + ID + + K DL + T + +S+ GEG+++L+ Sbjct: 301 FDGTLYPNLDAATLEMIDDATLVVLNKRDLMTGETPASINGRPVLTLSAKAGEGVDDLVA 360 Query: 357 KIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSL 416 ++ ++ ++F + + +RH +++ V L S + G+++ AE+LRLA+ SL Sbjct: 361 ELARVVESRFAMGSAPVLTRERHRVAVAEAVAAL---SRFDPGLGIEMAAEDLRLAARSL 417 Query: 417 GKITGCVDVEQLLDIIFSKFCIGK 440 G+ITG VDVE++LD+IF +FCIGK Sbjct: 418 GRITGRVDVEEILDVIFHEFCIGK 441 >gi|161505627|ref|YP_001572739.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160866974|gb|ABX23597.1| hypothetical protein SARI_03803 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 472 Score = 271 bits (693), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 166/459 (36%), Positives = 258/459 (56%), Gaps = 24/459 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+H +TI A +T + I+R+SG + +V + + K P PR A F DG Sbjct: 19 MSH-NDTIVAQATPPGRGGVGILRISGLNAKKVAQTVLGKL-PKPRYADYLPFKDADGAT 76 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG +++ +L+ + +P +R+A PGEFS RAF N Sbjct: 77 LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGVRIARPGEFSERAFLN 136 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + +E R ++ + G S+ ++ LTH+R ++EA +DF + Sbjct: 137 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 196 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + S ++ + + D+ + ++ + G ++R G K+VI G NAGKSSL NALA Sbjct: 197 EE-IDFLSDGKIEAQLNGVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 255 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + ++G + + DTAG+R+ D VE+ GI+R + E+E AD Sbjct: 256 GREAAIVTDIAGTTRDVLREHIHIDGMPLHVIDTAGLRDASDEVERIGIERAWQEIEQAD 315 Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTY---TEEYDH---LI 343 +L + + + + PKN+ + K+D+ +E H + Sbjct: 316 RVLFMVDGTTTDAVDPGDIWPDFIARLPKNLPITVVRNKADITGEMLGISEVNGHSLVRL 375 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401 S+ TGEG++ L N +K + + + +RHL L++ +LE A L G Sbjct: 376 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALAEAAEHLEQGKAQLLGAWAG 434 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LRLA SL +ITG + LL IFS FCIGK Sbjct: 435 -ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 472 >gi|205360204|ref|ZP_02835285.2| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205340459|gb|EDZ27223.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320088264|emb|CBY98026.1| tRNA modification GTPase mnmE [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 467 Score = 271 bits (693), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 168/459 (36%), Positives = 256/459 (55%), Gaps = 24/459 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+H +TI A +T + I+R+SG V + + K P PR A F DG Sbjct: 14 MSH-NDTIVAQATPPGRGGVGILRISGLKARDVAQEVLGKL-PKPRYADYLPFKDADGSA 71 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG +++ +L+ + +P LR+A PGEFS RAF N Sbjct: 72 LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLN 131 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + +E R ++ + G S+ ++ LTH+R ++EA +DF + Sbjct: 132 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 191 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + S ++ + + D+ + ++ + G ++R G K+VI G NAGKSSL NALA Sbjct: 192 EE-IDFLSDGKIEAQLNGVIADLDAVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 250 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + ++G + I DTAG+R+ D VE+ GI+R + E+E AD Sbjct: 251 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQAD 310 Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTY---TEEYDH---LI 343 +L + + + + PKN+ + K+D+ +E H + Sbjct: 311 RVLFMVDGTTTDAVDPADIWPDFIARLPKNLPITVVRNKADITGETLGISEVNGHSLVRL 370 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401 S+ TGEG++ L N +K + + + +RHL L++ +LE A L G Sbjct: 371 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALAEAAEHLEQGKAQLLGAWAG 429 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LRLA SL +ITG + LL IFS FCIGK Sbjct: 430 -ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 467 >gi|167548868|ref|ZP_02342627.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205325776|gb|EDZ13615.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 454 Score = 271 bits (693), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 167/459 (36%), Positives = 257/459 (55%), Gaps = 24/459 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+H +TI A +T + I+R+SG V + + K P PR A F +DG Sbjct: 1 MSH-NDTIVAQATPPGRGGVGILRISGLKARDVAQEVLGKL-PKPRYADYLPFKDVDGSA 58 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG +++ +L+ + +P +R+A PGEFS RAF N Sbjct: 59 LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + +E R ++ + G S+ ++ LTH+R ++EA +DF + Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + S ++ + + D+ + ++ + G ++R G K+VI G NAGKSSL NALA Sbjct: 179 EE-IDFLSDGKIEAQLNGVIADLDAVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + ++G + I DTAG+R+ D VE+ GI+R + E+E AD Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQAD 297 Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTY---TEEYDH---LI 343 +L + + + + PKN+ + K+D+ +E H + Sbjct: 298 RVLFMVDGTTTDAVDPADIWPDFIARLPKNLPITVVRNKADITGETLGISEVNGHSLVRL 357 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401 S+ TGEG++ L N +K + + + +RHL L++ +LE A L G Sbjct: 358 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALAEAADHLEQGKAQLLGAWAG 416 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LRLA SL +ITG + LL IFS FCIGK Sbjct: 417 -ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 454 >gi|322835121|ref|YP_004215148.1| tRNA modification GTPase TrmE [Rahnella sp. Y9602] gi|321170322|gb|ADW76021.1| tRNA modification GTPase TrmE [Rahnella sp. Y9602] Length = 454 Score = 271 bits (693), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 168/457 (36%), Positives = 256/457 (56%), Gaps = 29/457 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + I+R+SG + V + + K P PR A F DG LD+G+ Sbjct: 5 DTIIAQATPPGRGGVGILRISGRAARDVAQAVLGKL-PKPRYADYLPFQDADGSTLDQGI 63 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + FP P SFTGED E HGG +++ +L+ + + N+R+A PGEFS RAF N K+DL Sbjct: 64 ALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRIIALENVRIARPGEFSERAFLNDKLDL 123 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E R ++ + G S+ ++ LTH+R F+EA +DF +EE + Sbjct: 124 AQAEAIADLIDASSEQAARSAVNSLQGAFSNRIHHLVEALTHLRIFVEAAIDFPDEE-ID 182 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S ++ + + D+ + ++ + G ++R G K+VI G NAGKSSL NALA ++ A Sbjct: 183 FLSDGKIEAKLNTVMGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAA 242 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTDI GTTRDVL + L+G + I DTAG+RE D VE+ GI+R + E+E ADL+L + Sbjct: 243 IVTDIAGTTRDVLREHIHLDGMPLHIIDTAGLREASDEVERIGIERAWNEIEQADLVLFM 302 Query: 306 -----KEINSKKEI------SFPKNIDFIFIGTKSDLYST---YTEEYDH---LISSFTG 348 E +I P ++ + + K+D+ TE H +S+ TG Sbjct: 303 VDGTTTEATEPADIWPEFMARLPASLPIVVVRNKADITGEALGQTEVNGHSLIRLSARTG 362 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL-----D 403 +G++ L + +K ++ + + +RHL L Q ++L + KD L + Sbjct: 363 DGVDLLRDHLKQVMGFN-HNMEGGFLARRRHLQALEQAAQHL----VQGKDQLLGAWAGE 417 Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++AE LRLA SL +ITG + LL IFS FCIGK Sbjct: 418 LLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 454 >gi|146313778|ref|YP_001178852.1| tRNA modification GTPase TrmE [Enterobacter sp. 638] gi|166991109|sp|A4WGH1|MNME_ENT38 RecName: Full=tRNA modification GTPase mnmE gi|145320654|gb|ABP62801.1| tRNA modification GTPase trmE [Enterobacter sp. 638] gi|190171238|gb|ACE63689.1| ThdF [Enterobacter sp. 638] Length = 454 Score = 271 bits (693), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 167/459 (36%), Positives = 254/459 (55%), Gaps = 24/459 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+H +TI A +T + I+R+SG +V E + K P PR A F DG Sbjct: 1 MSH-NDTIVAQATPPGRGGVGILRISGLKAREVAEAVLGKL-PKPRYADYLPFNDADGTA 58 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG +++ +L+ + +P LR+A PGEFS RAF N Sbjct: 59 LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIAKPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + +E R ++ + G S+ ++ LTH+R ++EA +DF + Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSTRVNHLVEALTHLRIYVEAAIDFPD 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + S ++ + + D+ + ++ + G ++R G K+VI G NAGKSSL NALA Sbjct: 179 EE-IDFLSDGKIEAQLNTVMADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + ++G + I DTAG+R+ D VE+ GI+R + E+E AD Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQAD 297 Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTYTEEYD---H---LI 343 +L + + + + P + + K+D+ D H + Sbjct: 298 RVLFMVDGTTTSAVDPADIWPDFIARLPAKLPITVVRNKADMTGETLGLSDVNGHSLIRL 357 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401 S+ TGEG+E+L N +K + + + + +RHL L +L+ A L G Sbjct: 358 SARTGEGVEDLRNHLKQSMGFE-TNMEGGFLARRRHLQALEAAANHLDQGKAQLLGAWAG 416 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LRLA SL +ITG + LL IFS FCIGK Sbjct: 417 -ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 454 >gi|193063795|ref|ZP_03044882.1| tRNA modification GTPase TrmE [Escherichia coli E22] gi|194428063|ref|ZP_03060607.1| tRNA modification GTPase TrmE [Escherichia coli B171] gi|260846509|ref|YP_003224287.1| GTPase TrmE [Escherichia coli O103:H2 str. 12009] gi|293464030|ref|ZP_06664444.1| tRNA modification GTPase TrmE [Escherichia coli B088] gi|300815046|ref|ZP_07095271.1| tRNA modification GTPase TrmE [Escherichia coli MS 107-1] gi|192930510|gb|EDV83117.1| tRNA modification GTPase TrmE [Escherichia coli E22] gi|194413821|gb|EDX30099.1| tRNA modification GTPase TrmE [Escherichia coli B171] gi|257761656|dbj|BAI33153.1| GTPase TrmE [Escherichia coli O103:H2 str. 12009] gi|291321662|gb|EFE61098.1| tRNA modification GTPase TrmE [Escherichia coli B088] gi|300531938|gb|EFK53000.1| tRNA modification GTPase TrmE [Escherichia coli MS 107-1] gi|323161042|gb|EFZ46961.1| tRNA modification GTPase TrmE [Escherichia coli E128010] gi|323182501|gb|EFZ67905.1| tRNA modification GTPase TrmE [Escherichia coli 1357] gi|324115941|gb|EGC09867.1| tRNA modification GTPase TrmE [Escherichia coli E1167] Length = 454 Score = 271 bits (693), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 169/459 (36%), Positives = 254/459 (55%), Gaps = 29/459 (6%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63 + +TI A +T + I+R+SG +V E + K P PR A F DG +LD+ Sbjct: 3 DNDTIVAQATPPGRGGVGILRISGFKAREVAETVLGKL-PKPRYADYLPFKDADGSVLDQ 61 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 G+ + FP P SFTGED E HGG +++ +L+ + +P LR+A PGEFS RAF N K+ Sbjct: 62 GIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKL 121 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL +AE++ADLI + +E R ++ + G S+ ++ LTH+R ++EA +DF +EE Sbjct: 122 DLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE- 180 Query: 184 VQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 + S ++ LND++ + + + QG L +R G K+VI G NAGKSSL NALA Sbjct: 181 IDFLSDGKIEAQLNDVIAELDAVRAEARQGSL---LREGMKVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+E AD Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 297 Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDHL---I 343 +L + + + + P + + K+D+ +E H + Sbjct: 298 RVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRL 357 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401 S+ TGEG++ L N +K + + + +RHL L Q +L+ A L G Sbjct: 358 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG 416 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LRLA +L +ITG + LL IFS FCIGK Sbjct: 417 -ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454 >gi|161616963|ref|YP_001590928.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194447879|ref|YP_002047875.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197250655|ref|YP_002148780.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|198243069|ref|YP_002217792.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200387122|ref|ZP_03213734.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205359076|ref|ZP_02666996.2| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|161366327|gb|ABX70095.1| hypothetical protein SPAB_04784 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194406183|gb|ACF66402.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197214358|gb|ACH51755.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197937585|gb|ACH74918.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199604220|gb|EDZ02765.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205338960|gb|EDZ25724.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|322647617|gb|EFY44104.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] Length = 467 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 167/459 (36%), Positives = 257/459 (55%), Gaps = 24/459 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+H +TI A +T + I+R+SG V + + K P PR A F +DG Sbjct: 14 MSH-NDTIVAQATPPGRGGVGILRISGLKARDVAQEVLGKL-PKPRYADYLPFKDVDGSA 71 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG +++ +L+ + +P +R+A PGEFS RAF N Sbjct: 72 LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 131 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + +E R ++ + G S+ ++ LTH+R ++EA +DF + Sbjct: 132 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 191 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + S ++ + + D+ + ++ + G ++R G K+VI G NAGKSSL NALA Sbjct: 192 EE-IDFLSDGKIEAQLNGVIADLDAVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 250 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + ++G + I DTAG+R+ D VE+ GI+R + E+E AD Sbjct: 251 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQAD 310 Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTY---TEEYDH---LI 343 +L + + + + PKN+ + K+D+ +E H + Sbjct: 311 RVLFMVDGTTTDAVDPADIWPDFIARLPKNLPITVVRNKADITGETLGISEVNGHSLVRL 370 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401 S+ TGEG++ L N +K + + + +RHL L++ +LE A L G Sbjct: 371 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALAEAAEHLEQGKAQLLGAWAG 429 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LRLA SL +ITG + LL IFS FCIGK Sbjct: 430 -ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 467 >gi|300983699|ref|ZP_07176709.1| tRNA modification GTPase TrmE [Escherichia coli MS 200-1] gi|300306872|gb|EFJ61392.1| tRNA modification GTPase TrmE [Escherichia coli MS 200-1] gi|315285497|gb|EFU44942.1| tRNA modification GTPase TrmE [Escherichia coli MS 110-3] Length = 475 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 165/456 (36%), Positives = 253/456 (55%), Gaps = 23/456 (5%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63 + +TI A +T + I+R+SG +V E + K P PR A F DG +LD+ Sbjct: 24 DNDTIVAQATPPGRGGVGILRISGLKAREVAETVLGKL-PKPRYADYLPFKDADGSVLDQ 82 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 G+ + FP P SFTGED E HGG +++ +L+ + +P LR+A PGEFS RAF N K+ Sbjct: 83 GIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKL 142 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL +AE++ADLI + +E R ++ + G S+ ++ LTH+R ++EA +DF +EE Sbjct: 143 DLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE- 201 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 + S ++ + + D+ + ++ + G ++R G K+VI G NAGKSSL NALA ++ Sbjct: 202 IDFLSDGKIEAQLNNVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGRE 261 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303 AIVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+E AD +L Sbjct: 262 AAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVL 321 Query: 304 LLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDHL---ISSF 346 + + + + P + + K+D+ +E H +S+ Sbjct: 322 FMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRLSAR 381 Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDI 404 TGEG++ L N +K + + + +RHL L Q +L+ A L G ++ Sbjct: 382 TGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG-EL 439 Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +AE LRLA +L +ITG + LL IFS FCIGK Sbjct: 440 LAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 475 >gi|26250447|ref|NP_756487.1| tRNA modification GTPase TrmE [Escherichia coli CFT073] gi|91213231|ref|YP_543217.1| tRNA modification GTPase TrmE [Escherichia coli UTI89] gi|110644049|ref|YP_671779.1| tRNA modification GTPase TrmE [Escherichia coli 536] gi|117625981|ref|YP_859304.1| tRNA modification GTPase TrmE [Escherichia coli APEC O1] gi|191170442|ref|ZP_03031995.1| tRNA modification GTPase TrmE [Escherichia coli F11] gi|218560782|ref|YP_002393695.1| tRNA modification GTPase TrmE [Escherichia coli S88] gi|227883929|ref|ZP_04001734.1| tRNA modification GTPase TrmE [Escherichia coli 83972] gi|237703508|ref|ZP_04533989.1| tRNA modification GTPase mnmE [Escherichia sp. 3_2_53FAA] gi|306815940|ref|ZP_07450078.1| tRNA modification GTPase TrmE [Escherichia coli NC101] gi|331660050|ref|ZP_08360988.1| tRNA modification GTPase TrmE [Escherichia coli TA206] gi|32171844|sp|Q8FBV3|MNME_ECOL6 RecName: Full=tRNA modification GTPase mnmE gi|122421834|sp|Q1R4M8|MNME_ECOUT RecName: Full=tRNA modification GTPase mnmE gi|123048671|sp|Q0TB01|MNME_ECOL5 RecName: Full=tRNA modification GTPase mnmE gi|166200477|sp|A1AHP0|MNME_ECOK1 RecName: Full=tRNA modification GTPase mnmE gi|254811476|sp|B7MGC8|MNME_ECO45 RecName: Full=tRNA modification GTPase mnmE gi|26110877|gb|AAN83061.1|AE016769_176 Probable tRNA modification GTPase trmE [Escherichia coli CFT073] gi|91074805|gb|ABE09686.1| probable tRNA modification GTPase TrmE [Escherichia coli UTI89] gi|110345641|gb|ABG71878.1| probable tRNA modification GTPase TrmE [Escherichia coli 536] gi|115515105|gb|ABJ03180.1| tRNA modification GTPase [Escherichia coli APEC O1] gi|190909250|gb|EDV68836.1| tRNA modification GTPase TrmE [Escherichia coli F11] gi|218367551|emb|CAR05336.1| GTPase [Escherichia coli S88] gi|226902772|gb|EEH89031.1| tRNA modification GTPase mnmE [Escherichia sp. 3_2_53FAA] gi|227839207|gb|EEJ49673.1| tRNA modification GTPase TrmE [Escherichia coli 83972] gi|294489502|gb|ADE88258.1| tRNA modification GTPase TrmE [Escherichia coli IHE3034] gi|305850336|gb|EFM50793.1| tRNA modification GTPase TrmE [Escherichia coli NC101] gi|307555847|gb|ADN48622.1| tRNA modification GTPase TrmE [Escherichia coli ABU 83972] gi|307628783|gb|ADN73087.1| tRNA modification GTPase TrmE [Escherichia coli UM146] gi|323949951|gb|EGB45835.1| tRNA modification GTPase TrmE [Escherichia coli H252] gi|323954998|gb|EGB50776.1| tRNA modification GTPase TrmE [Escherichia coli H263] gi|331053265|gb|EGI25298.1| tRNA modification GTPase TrmE [Escherichia coli TA206] Length = 454 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 165/456 (36%), Positives = 253/456 (55%), Gaps = 23/456 (5%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63 + +TI A +T + I+R+SG +V E + K P PR A F DG +LD+ Sbjct: 3 DNDTIVAQATPPGRGGVGILRISGLKAREVAETVLGKL-PKPRYADYLPFKDADGSVLDQ 61 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 G+ + FP P SFTGED E HGG +++ +L+ + +P LR+A PGEFS RAF N K+ Sbjct: 62 GIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKL 121 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL +AE++ADLI + +E R ++ + G S+ ++ LTH+R ++EA +DF +EE Sbjct: 122 DLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE- 180 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 + S ++ + + D+ + ++ + G ++R G K+VI G NAGKSSL NALA ++ Sbjct: 181 IDFLSDGKIEAQLNNVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGRE 240 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303 AIVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+E AD +L Sbjct: 241 AAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVL 300 Query: 304 LLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDHL---ISSF 346 + + + + P + + K+D+ +E H +S+ Sbjct: 301 FMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRLSAR 360 Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDI 404 TGEG++ L N +K + + + +RHL L Q +L+ A L G ++ Sbjct: 361 TGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG-EL 418 Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +AE LRLA +L +ITG + LL IFS FCIGK Sbjct: 419 LAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454 >gi|300984421|ref|ZP_07176985.1| tRNA modification GTPase TrmE [Escherichia coli MS 45-1] gi|300408377|gb|EFJ91915.1| tRNA modification GTPase TrmE [Escherichia coli MS 45-1] Length = 479 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 165/456 (36%), Positives = 253/456 (55%), Gaps = 23/456 (5%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63 + +TI A +T + I+R+SG +V E + K P PR A F DG +LD+ Sbjct: 28 DNDTIVAQATPPGRGGVGILRISGLKAREVAETVLGKL-PKPRYADYLPFKDADGSVLDQ 86 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 G+ + FP P SFTGED E HGG +++ +L+ + +P LR+A PGEFS RAF N K+ Sbjct: 87 GIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKL 146 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL +AE++ADLI + +E R ++ + G S+ ++ LTH+R ++EA +DF +EE Sbjct: 147 DLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE- 205 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 + S ++ + + D+ + ++ + G ++R G K+VI G NAGKSSL NALA ++ Sbjct: 206 IDFLSDGKIEAQLNNVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGRE 265 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303 AIVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+E AD +L Sbjct: 266 AAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVL 325 Query: 304 LLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDHL---ISSF 346 + + + + P + + K+D+ +E H +S+ Sbjct: 326 FMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRLSAR 385 Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDI 404 TGEG++ L N +K + + + +RHL L Q +L+ A L G ++ Sbjct: 386 TGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG-EL 443 Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +AE LRLA +L +ITG + LL IFS FCIGK Sbjct: 444 LAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 479 >gi|226326927|ref|ZP_03802445.1| hypothetical protein PROPEN_00787 [Proteus penneri ATCC 35198] gi|225204764|gb|EEG87118.1| hypothetical protein PROPEN_00787 [Proteus penneri ATCC 35198] Length = 454 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 172/462 (37%), Positives = 256/462 (55%), Gaps = 33/462 (7%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62 H +TI A +T + I+R+SGP V + + K P PR A F D +LD Sbjct: 2 HSTDTIVAQATPPGRGGVGILRVSGPKAALVAQTVLGKL-PKPRYADYLPFRNDDNSVLD 60 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 +G+ + FP+P SFTGED E HGG +++ +L+ + ++P +R+ANPGEFS RAF N K Sbjct: 61 QGIALFFPNPNSFTGEDVLELQGHGGPVILDLLLKRILQIPGVRIANPGEFSERAFLNDK 120 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 +DL +AE++ADLI + +E R ++ + G SS + ++ LTH+R ++EA +DF +EE Sbjct: 121 LDLAQAEAIADLIDASSEQAARSAINSLQGAFSSHVNEMVESLTHLRIYVEAAIDFPDEE 180 Query: 183 DVQNFSSKEV----LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 +F S + LN ++ +D+ + QG L +R G K+VI G NAGKSSL NA Sbjct: 181 --IDFLSDGIIEGKLNAVIAELDDVRAQARQGSL---LREGMKVVIAGRPNAGKSSLLNA 235 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 LA ++ AIVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+E Sbjct: 236 LAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWKEIEQ 295 Query: 299 ADLILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTYTE-----EYDHL 342 AD +L + + + + P + I KSDL E Y + Sbjct: 296 ADRVLFMVDSTTTDATTPEDIWPEFMARLPNTLPVTVIRNKSDLTGENAEITAQGNYPMI 355 Query: 343 -ISSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEK 398 +S+ G G+E L + +K + N + F + +RHL L+ +L+ L Sbjct: 356 RLSARDGMGIELLRDHLKEAMGFNSNTEGGFL--ARRRHLQALNTAAEHLQQGHEQLVYA 413 Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G +++AE LRLA +L +ITG + LL IFS FCIGK Sbjct: 414 KSG-ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454 >gi|301047527|ref|ZP_07194602.1| tRNA modification GTPase TrmE [Escherichia coli MS 185-1] gi|300300576|gb|EFJ56961.1| tRNA modification GTPase TrmE [Escherichia coli MS 185-1] gi|315292850|gb|EFU52202.1| tRNA modification GTPase TrmE [Escherichia coli MS 153-1] Length = 477 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 165/456 (36%), Positives = 253/456 (55%), Gaps = 23/456 (5%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63 + +TI A +T + I+R+SG +V E + K P PR A F DG +LD+ Sbjct: 26 DNDTIVAQATPPGRGGVGILRISGLKAREVAETVLGKL-PKPRYADYLPFKDADGSVLDQ 84 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 G+ + FP P SFTGED E HGG +++ +L+ + +P LR+A PGEFS RAF N K+ Sbjct: 85 GIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKL 144 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL +AE++ADLI + +E R ++ + G S+ ++ LTH+R ++EA +DF +EE Sbjct: 145 DLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE- 203 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 + S ++ + + D+ + ++ + G ++R G K+VI G NAGKSSL NALA ++ Sbjct: 204 IDFLSDGKIEAQLNNVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGRE 263 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303 AIVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+E AD +L Sbjct: 264 AAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVL 323 Query: 304 LLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDHL---ISSF 346 + + + + P + + K+D+ +E H +S+ Sbjct: 324 FMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRLSAR 383 Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDI 404 TGEG++ L N +K + + + +RHL L Q +L+ A L G ++ Sbjct: 384 TGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG-EL 441 Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +AE LRLA +L +ITG + LL IFS FCIGK Sbjct: 442 LAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 477 >gi|325577780|ref|ZP_08148055.1| tRNA modification GTPase TrmE [Haemophilus parainfluenzae ATCC 33392] gi|325160525|gb|EGC72651.1| tRNA modification GTPase TrmE [Haemophilus parainfluenzae ATCC 33392] Length = 452 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 168/455 (36%), Positives = 256/455 (56%), Gaps = 23/455 (5%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64 KETI A +T I I+R+SGP +V + + K P PR A F DG +LD+G Sbjct: 2 KETIVAQATAPGRGGIGILRVSGPKALEVAQAVLGKC-PKPRMADYLPFKDADGTVLDQG 60 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 + + F SP SFTGED E HGG V++ +L+ + ++ +RLA PGEFS +AF N K+D Sbjct: 61 IALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQLDGVRLARPGEFSEQAFLNDKLD 120 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ADLI + +E R +++ + GE S+ Q +D + ++R+++EA +DF +EE + Sbjct: 121 LAQAEAIADLIDATSEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEASIDFPDEE-I 179 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + ++ + + N + S+ K G I+R G K+VI G NAGKSSL NALA ++ Sbjct: 180 DFLADGKIEAKLREIINQLDLVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREA 239 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI R + E+E AD I+L Sbjct: 240 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREATDEVERIGISRAWTEIEQADRIIL 299 Query: 305 L-----------KEINSKKEISFPKNIDFIFIGTKSDLYSTYT---EEYDH---LISSFT 347 + +++ S+ P N+ + K DL EE +S+ T Sbjct: 300 MLDSSDPDSQHIEKVRSEFLSKLPNNMPVTIVRNKVDLSGEAVGLKEENGTTTICLSAQT 359 Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDII 405 +G++ L +K + + + + +RHL L + +L+ + L E G +++ Sbjct: 360 HQGVDLLREHLKQAMGFQ-TGMEGGFLARRRHLDALEKAAEHLQIGLVQLTEFHAG-ELL 417 Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 AE LRL +L +ITG + LL IFS FCIGK Sbjct: 418 AEELRLVQANLSEITGQFTSDDLLGNIFSSFCIGK 452 >gi|238913095|ref|ZP_04656932.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 467 Score = 270 bits (691), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 167/459 (36%), Positives = 257/459 (55%), Gaps = 24/459 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+H +TI A +T + I+R+SG V + + K P PR A F +DG Sbjct: 14 MSH-NDTIVAQATPPGRGGVGILRISGLKARDVAQEVLGKL-PKPRYADYLPFKDVDGSA 71 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG +++ +L+ + +P +R+A PGEFS RAF N Sbjct: 72 LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 131 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + +E R ++ + G S+ ++ LTH+R ++EA +DF + Sbjct: 132 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 191 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + S ++ + + D+ + ++ + G ++R G K+VI G NAGKSSL NALA Sbjct: 192 EE-IDFLSDGKIEAQLNGVIADLDAVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 250 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + ++G + I DTAG+R+ D VE+ GI+R + E+E AD Sbjct: 251 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQAD 310 Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTY---TEEYDH---LI 343 +L + + + + PKN+ + K+D+ +E H + Sbjct: 311 RVLFMVDGTTTDAVDPADIWPDFIARLPKNLPITVVRNKADITGETLGISEVNGHSLVRL 370 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401 S+ TGEG++ L N +K + + + +RHL L++ +LE A L G Sbjct: 371 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALAEAADHLEQGKAQLLGAWAG 429 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LRLA SL +ITG + LL IFS FCIGK Sbjct: 430 -ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 467 >gi|301154697|emb|CBW14160.1| GTPase [Haemophilus parainfluenzae T3T1] Length = 452 Score = 270 bits (691), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 170/456 (37%), Positives = 257/456 (56%), Gaps = 25/456 (5%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64 KETI A +T I I+R+SGP +V + + K P PR A F DG +LD+G Sbjct: 2 KETIVAQATAPGRGGIGILRVSGPRAVEVAQAVLGKC-PKPRMADYLPFKDADGTVLDQG 60 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 + + F SP SFTGED E HGG V++ +L+ + ++ +RLA PGEFS +AF N K+D Sbjct: 61 IALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQLDGVRLARPGEFSEQAFLNDKLD 120 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ADLI + +E R +++ + GE S+ Q +D + ++R+++EA +DF +EE + Sbjct: 121 LAQAEAIADLIDATSEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEASIDFPDEE-I 179 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + ++ + + N + S+ K G I+R G K+VI G NAGKSSL NALA ++ Sbjct: 180 DFLADGKIEAKLREIINQLDLVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREA 239 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI R + E+E AD I+L Sbjct: 240 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREATDEVERIGISRAWTEIEQADRIIL 299 Query: 305 L-----------KEINSKKEISFPKNIDFIFIGTKSDLYSTYT---EEYD----HLISSF 346 + +++ S+ P N+ + K DL EE HL S+ Sbjct: 300 MLDSSDPDSQNIEKVRSEFLSKLPNNMPVTIVRNKVDLSGEAVGLKEENGTTTIHL-SAQ 358 Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDI 404 T +G++ L +K + + + + +RHL L + +L+ + L E G ++ Sbjct: 359 THQGVDLLREHLKQAMGFQ-TGMEGGFLARRRHLDALEKAAEHLQIGLVQLTEFHAG-EL 416 Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +AE LRL +L +ITG + LL IFS FCIGK Sbjct: 417 LAEELRLVQANLSEITGQFTSDDLLGNIFSSFCIGK 452 >gi|324012741|gb|EGB81960.1| tRNA modification GTPase TrmE [Escherichia coli MS 60-1] Length = 481 Score = 270 bits (691), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 165/456 (36%), Positives = 253/456 (55%), Gaps = 23/456 (5%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63 + +TI A +T + I+R+SG +V E + K P PR A F DG +LD+ Sbjct: 30 DNDTIVAQATPPGRGGVGILRISGLKAREVAETVLGKL-PKPRYADYLPFKDADGSVLDQ 88 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 G+ + FP P SFTGED E HGG +++ +L+ + +P LR+A PGEFS RAF N K+ Sbjct: 89 GIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKL 148 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL +AE++ADLI + +E R ++ + G S+ ++ LTH+R ++EA +DF +EE Sbjct: 149 DLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE- 207 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 + S ++ + + D+ + ++ + G ++R G K+VI G NAGKSSL NALA ++ Sbjct: 208 IDFLSDGKIEAQLNNVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGRE 267 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303 AIVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+E AD +L Sbjct: 268 AAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVL 327 Query: 304 LLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDHL---ISSF 346 + + + + P + + K+D+ +E H +S+ Sbjct: 328 FMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRLSAR 387 Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDI 404 TGEG++ L N +K + + + +RHL L Q +L+ A L G ++ Sbjct: 388 TGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG-EL 445 Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +AE LRLA +L +ITG + LL IFS FCIGK Sbjct: 446 LAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 481 >gi|194770800|ref|XP_001967476.1| GF20720 [Drosophila ananassae] gi|190618486|gb|EDV34010.1| GF20720 [Drosophila ananassae] Length = 493 Score = 270 bits (691), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 167/478 (34%), Positives = 260/478 (54%), Gaps = 52/478 (10%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFIC--KKKKPFPRKASLRYFFGLDGR-ILDK 63 TI+++S+G + +S+IR+SGP + I K+ +P R+A L+ FF + ++D+ Sbjct: 24 TIYSLSSGNVKCGVSVIRVSGPQTKKALRAIVGNKEYEPKARQAYLKSFFHPASKEMIDR 83 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 GLL+ FP P SFTGEDS EF VHG +AV+ +L+ L K+ LR A PGEF++RAF GK+ Sbjct: 84 GLLLWFPGPASFTGEDSCEFQVHGSLAVIAAMLDALGKVDGLRPAEPGEFTKRAFFGGKL 143 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL E E LADLI +ETE QR+ ++ +G L LY W +L + +EA +DF+EEE Sbjct: 144 DLTEVEGLADLIHAETEAQRKQALLQSTGALGRLYDNWRRRLIRCAAHLEAYIDFAEEEQ 203 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 ++ ++ ++ +K +I H+S + GE++R+G + VI+G N GKSSL N L ++ Sbjct: 204 IEGGVILQLTKELNSVKREIKEHLSDQRQGELLRDGVRTVIIGAPNVGKSSLLNLLCQRS 263 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEVENADLI 302 VAIVTD GTTRD++ + GY V SDTAG+R+ T D +E+EG++R + +D+I Sbjct: 264 VAIVTDQAGTTRDIIETMHNFGGYPVVFSDTAGLRKNTTDSIEQEGMQRAKDCLAQSDMI 323 Query: 303 LLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362 LL+ + + +EI ++ S +Y +E D + G+ L+ + NK ++ Sbjct: 324 LLMADAKTIREIDHEDSV--------SQFVDSYLQELDIPVDLCNGKRLQLVANKTDTLS 375 Query: 363 SNKFKKLP-----FSIPSHK------------RHLYHLSQTVRYLEMASLN-------EK 398 + ++L +I H+ +HL L R N E+ Sbjct: 376 PTEIQQLEKLSNVLAISCHQPDKISGFLGHLEKHLQELCGEPRAESPRITNTRYRQQLER 435 Query: 399 DCG----------------LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G + I A LR + + +ITG V E +LD++F FCIGK Sbjct: 436 CIGHIDVFLRDYRPDRYPDMAIAAAKLRNSVRCIERITGHVSCEDILDVVFKDFCIGK 493 >gi|168464825|ref|ZP_02698717.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195632244|gb|EDX50728.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 454 Score = 270 bits (691), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 164/458 (35%), Positives = 254/458 (55%), Gaps = 22/458 (4%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+H +TI A +T + I+R+SG V + + K P PR A F +DG Sbjct: 1 MSH-NDTIVAQATPPGRGGVGILRISGLKARDVAQEVLGKL-PKPRYADYLPFKDVDGSA 58 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG +++ +L+ + +P +R+A PGEFS RAF N Sbjct: 59 LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + +E R ++ + G S+ ++ LTH+R ++EA +DF + Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + S ++ + + D+ + ++ + G ++R G K+VI G NAGKSSL NALA Sbjct: 179 EE-IDFLSDGKIEAQLNGVIADLDAVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + ++G + I DTAG+R+ D VE+ GI+R + E+E AD Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQAD 297 Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTY---TEEYDH---LI 343 +L + + + + PKN+ + K+D+ +E H + Sbjct: 298 RVLFMVDGTTTDAVDPADIWPDFIARLPKNLPITVVRNKADITGETLGISEVNGHSLVRL 357 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL- 402 S+ TGEG++ L N +K + + + +RHL L++ +LE Sbjct: 358 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALAEAAEHLEQGKTQLLGAWAG 416 Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LRLA SL +ITG + LL IFS FCIGK Sbjct: 417 ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 454 >gi|251791811|ref|YP_003006532.1| tRNA modification GTPase TrmE [Dickeya zeae Ech1591] gi|247540432|gb|ACT09053.1| tRNA modification GTPase TrmE [Dickeya zeae Ech1591] Length = 454 Score = 270 bits (690), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 168/462 (36%), Positives = 258/462 (55%), Gaps = 30/462 (6%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+H +TI A +T + I+R+SG V + I K P PR A F DG + Sbjct: 1 MSH-TDTIVAQATPPGRGGVGILRISGRQASVVAQAILGKL-PKPRYADYLPFHDADGSV 58 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG +++ +L+ +A P +R+A PGEFS RAF N Sbjct: 59 LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRVAAQPGVRIARPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + +E R ++ + G SS Q ++ LTH+R ++EA +DF + Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSAVNSLQGVFSSRVHQLVEALTHLRIYVEAAIDFPD 178 Query: 181 EED--VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 EE + + + +LN+++ D+ + + + G ++R G K+VI G NAGKSSL NA Sbjct: 179 EEIDFLSDGKIEAMLNEVI---GDLEAVRGEARQGSLLREGMKVVIAGRPNAGKSSLLNA 235 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 LA +D AIVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+E Sbjct: 236 LAGRDAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAGDEVERIGIERAWQEIEQ 295 Query: 299 ADLILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTY--TEEYDHL--- 342 AD +L + + + + P + + K+D+ EE + Sbjct: 296 ADRVLFMVDGTTTDAVEPAAIWPEFMARLPSRLPITVVRNKADVTGEPLGIEEVNTYSLI 355 Query: 343 -ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401 +S+ TG+G++ L + +K + + +RHL L Q ++L+ +E+ G Sbjct: 356 RLSARTGDGVDLLRDHLKQSMGFT-SNTEGGFLARRRHLQALEQAAQHLQQG--HEQLVG 412 Query: 402 L---DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LRLA +L +ITG + LL IFS FCIGK Sbjct: 413 AYAGELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454 >gi|226942147|ref|YP_002797221.1| tRNA modification GTPase TrmE [Laribacter hongkongensis HLHK9] gi|254811488|sp|C1D6H7|MNME_LARHH RecName: Full=tRNA modification GTPase mnmE gi|226717074|gb|ACO76212.1| tRNA modification GTPase trmE [Laribacter hongkongensis HLHK9] Length = 450 Score = 270 bits (690), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 157/438 (35%), Positives = 249/438 (56%), Gaps = 20/438 (4%) Query: 18 SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77 + +IRLSG + + + ++P PR A F DG+ +D GLL+ FP+P SFTG Sbjct: 18 GGVGVIRLSGRNLLPLAGQLSGGRQPRPRHALYTDFVASDGQAIDSGLLLYFPAPHSFTG 77 Query: 78 EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137 ED E HGG ++ +L ++ RLA PGEF++RAF N K+DL+EAES+ADLI + Sbjct: 78 EDVLELQGHGGPVILRMLLARCLEL-GARLAEPGEFTKRAFLNDKMDLVEAESVADLIDA 136 Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197 ++E R +++ + G S+ + +D L +R EA LDF EE+DV+ + L + Sbjct: 137 QSETAARSALKSLKGAFSAEIHRLVDTLIDLRMLTEATLDFPEEDDVEWLEKADALGRLA 196 Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257 ++ +++ ++ + G I+R G +V++G N GKSSL NALA ++AIVTDI GTTRD Sbjct: 197 AVRRQLATVLATARQGAILREGMHVVLVGQPNVGKSSLMNALAGDEIAIVTDIAGTTRDT 256 Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS-- 315 + + L+G + I DTAG+RET D VE+ GI+RT+ VE AD++LLL ++ + ++ Sbjct: 257 VREQIVLDGVPLHIIDTAGLRETTDTVERIGIERTWQAVERADVVLLL--VDGRDGVTAA 314 Query: 316 -------FPKNIDFIFIGTKSDL---YSTYTEEYDHLI---SSFTGEGLEELINKIKSIL 362 P+ + +F+ K DL + +EE H++ S+ G G++ L + + Sbjct: 315 DAAILARLPERLPRVFVHNKIDLTGETAGVSEEDGHVVVRLSARGGAGVDALRQVLLEAV 374 Query: 363 SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGC 422 + + + + +RHL + + LE A ++ AE+LR A L +ITG Sbjct: 375 GWQGESEGLFL-ARERHLDAIRRAEAELEAAG-QAYGLAAELFAEHLRQAQACLSEITGE 432 Query: 423 VDVEQLLDIIFSKFCIGK 440 + LL +IFS+FCIGK Sbjct: 433 FSADDLLGVIFSRFCIGK 450 >gi|327482910|gb|AEA86220.1| tRNA modification GTPase TrmE [Pseudomonas stutzeri DSM 4166] Length = 455 Score = 270 bits (690), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 168/461 (36%), Positives = 254/461 (55%), Gaps = 35/461 (7%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64 ++TI AV+T + IIR+SGP + ++P PR A F DG ++D+G Sbjct: 5 RDTIAAVATAPGRGGVGIIRVSGPRARAIA-ITLSGREPTPRHAHYGPFHADDGEVIDEG 63 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 LL+ FP P SFTGED E H HGG V++ +L+ ++ +RLA PGEFS RAF N K+D Sbjct: 64 LLLFFPGPHSFTGEDVLELHGHGGPVVLDMLLQRCVEL-GVRLARPGEFSERAFLNDKLD 122 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ADLI + + R ++ + GE S Q ++L +R ++EA +DF EEE + Sbjct: 123 LAQAEAIADLIEASSAQAARNAVRSLQGEFSRRVHQLTERLIQLRIYVEAAIDFPEEE-I 181 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + VL + ++ ++S+ + + G ++R+G +VI G NAGKSSL NALA ++ Sbjct: 182 DFLADGHVLAQLDGVRTELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALAGREA 241 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIVTDI GTTRDVL + ++G + + DTAG+R+T+D VE+ G++R + AD ILL Sbjct: 242 AIVTDIAGTTRDVLREHILIDGMPLHVVDTAGLRDTEDQVERIGVQRALSAIGEADRILL 301 Query: 305 LKEIN----SKKEISFPKNIDF-------IFIGTKSDLYSTYT-------EEYDHLISSF 346 + + + S +P+ +DF I K+DL + + + Sbjct: 302 VVDASAPEASDPSALWPEFLDFSPEPGKVTLIRNKADLTGEAIVLRCDNDGQATLSLCAR 361 Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL-------YHLSQTVRYLEMASLNEKD 399 +GEGLE L +K + + + S + +RHL HL L +A E Sbjct: 362 SGEGLELLREHLKHCMGYE-QTAESSFSARRRHLDALRLADEHLRHGHDQLTLAGAGE-- 418 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++AE+LRLA +LG+ITG + LL IFS FCIGK Sbjct: 419 ----LLAEDLRLAQQALGEITGAFSSDDLLGRIFSSFCIGK 455 >gi|218662615|ref|ZP_03518545.1| tRNA modification GTPase TrmE [Rhizobium etli IE4771] Length = 290 Score = 270 bits (690), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 136/263 (51%), Positives = 185/263 (70%), Gaps = 7/263 (2%) Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AFENGK+DL+E E LADLI +ETEMQRRL++E +G +S++Y W ++LT R+ IEA+L Sbjct: 1 AFENGKLDLVEVEGLADLIEAETEMQRRLAVEHSAGGVSAVYDSWAERLTRARALIEAEL 60 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 DF++E+DV S V D+ L+NDI H+ GEIIR+G+K+VI G NAGKSSL Sbjct: 61 DFADEDDVPGSVSDMVWADMDRLRNDIWHHLDAASAGEIIRDGFKVVIAGAPNAGKSSLL 120 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 NALA++DVAIVTDI GTTRDVL +DLD++GYLVK+ DTAG+RE DD VE EG++R + + Sbjct: 121 NALARRDVAIVTDIAGTTRDVLQVDLDIDGYLVKLYDTAGLREADDRVEMEGVRRARIAL 180 Query: 297 ENADLILLLKEINSKKEISFPKNID----FIFIGTKSDLYSTYTEEYDHLISSFTGEGLE 352 +ADL+LLL +++ P ++D + +GTK DL T ++ YD IS+ TGEGL Sbjct: 181 RDADLVLLLVDVSDP---VIPADLDQAVPHVRVGTKKDLIETGSDRYDLRISTATGEGLP 237 Query: 353 ELINKIKSILSNKFKKLPFSIPS 375 EL I ++ +F L +IPS Sbjct: 238 ELRALIGRVVKERFAGLSMAIPS 260 >gi|288942813|ref|YP_003445053.1| tRNA modification GTPase TrmE [Allochromatium vinosum DSM 180] gi|288898185|gb|ADC64021.1| tRNA modification GTPase TrmE [Allochromatium vinosum DSM 180] Length = 447 Score = 270 bits (690), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 173/452 (38%), Positives = 245/452 (54%), Gaps = 17/452 (3%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M ETI A++T + I+R+SGP + E I + P PR+A+ F DG Sbjct: 1 MTTTGETIAAIATPPGMGGVGIVRISGPRTRSIAEGILGRV-PEPRRAAFGTFREADGTF 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+GL + F +P SFTGED E HGG V++ +L ++ RLA PGEFS RAF N Sbjct: 60 IDEGLALYFQAPRSFTGEDVLELQGHGGPIVMDLLLRRCLEL-GARLARPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GK+DL++AE++ADLI S T + RL+ + G S +++L +R +EA LDF + Sbjct: 119 GKLDLVQAEAVADLIESSTALAVRLAGRSLQGVFSQRINTLVERLIQVRLHVEATLDFPD 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + V D+ + + ++ G+IIR G +VI G N GKSSL NAL Sbjct: 179 EE-IDLADEPTVAIDLAAILEAVDRLLADAHQGQIIREGLAVVIAGAPNVGKSSLLNALC 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 D AIVTDIPGTTRD+L D+ ++G ++I DTAG+R T D VE+EG++R + AD Sbjct: 238 GSDAAIVTDIPGTTRDLLKFDIQVDGLPIRIVDTAGLRHTHDPVEQEGVRRAQTALSEAD 297 Query: 301 LILLLKEINSKKEIS----FPKNIDFIFIGTKSDLYSTYT------EEYDHLISSFTGEG 350 L+L + N + + S FP I K DL E + +S +GEG Sbjct: 298 LVLWVYAANGEPDESIRSTFPAGCPITRIRNKIDLPGEAAGLVERDGEVEIALSVASGEG 357 Query: 351 LEELINKIKSILSNKFKKLP-FSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAEN 408 L+ L +KS P + + +RHL L + L A+ N E+ G +++AE Sbjct: 358 LDLLKAHLKS--RAGLSAHPEGAFIARRRHLDALERARGALRAAATNLERRLGAELVAEE 415 Query: 409 LRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L LA +LG+ITG + LL IFS FCIGK Sbjct: 416 LHLAQRALGEITGEFTSDDLLGRIFSSFCIGK 447 >gi|283836140|ref|ZP_06355881.1| hypothetical protein CIT292_10562 [Citrobacter youngae ATCC 29220] gi|291068330|gb|EFE06439.1| tRNA modification GTPase TrmE [Citrobacter youngae ATCC 29220] Length = 454 Score = 270 bits (690), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 171/460 (37%), Positives = 260/460 (56%), Gaps = 26/460 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+H +TI A +T + I+R+SG +V E + K P PR A F DG Sbjct: 1 MSH-NDTIVAQATPPGRGGVGILRISGLKAREVAETVLGKL-PKPRYADYLPFKDADGSS 58 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG +++ +L+ + +P LR+A PGEFS RAF N Sbjct: 59 LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + +E R ++ + G S+ ++ LTH+R ++EA +DF + Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + S ++ + + D+ + ++ + G ++R G K+VI G NAGKSSL NALA Sbjct: 179 EE-IDFLSDGKIEAQLNSVIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + ++G + I DTAG+R+ D VE+ GI+R + E+E AD Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQAD 297 Query: 301 LILLLKEINSKKEISFPKNI--DFI----------FIGTKSDLYST---YTEEYDH---L 342 +L + + + + P NI DFI + K+D+ +E H Sbjct: 298 RVLFMVDGTTTDAVD-PANIWPDFIARLPAKLPITVVRNKADITGETLGLSEVNGHSLVR 356 Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDC 400 +S+ TGEG++ L N +K + + + + +RHL L++ +LE A L Sbjct: 357 LSARTGEGVDVLRNHLKQSMGFE-TNMEGGFLARRRHLQALAEAAEHLEQGKAQLLGAWA 415 Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G +++AE LRLA +L +ITG + LL IFS FCIGK Sbjct: 416 G-ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454 >gi|237729028|ref|ZP_04559509.1| tRNA modification GTPase TrmE [Citrobacter sp. 30_2] gi|226909650|gb|EEH95568.1| tRNA modification GTPase TrmE [Citrobacter sp. 30_2] Length = 454 Score = 270 bits (690), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 166/459 (36%), Positives = 257/459 (55%), Gaps = 24/459 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+H +TI A +T + I+R+SG +V E + K P PR A F DG Sbjct: 1 MSH-NDTIVAQATPPGRGGVGILRISGLKAREVAETVLGKL-PKPRYADYLPFKDADGSA 58 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG +++ +L+ + +P LR+A PGEFS RAF N Sbjct: 59 LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + +E R ++ + G S+ ++ LTH+R ++EA +DF + Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + S ++ + + +D+ + ++ + G ++R G K+VI G NAGKSSL NALA Sbjct: 179 EE-IDFLSDGKIEAQLNSVISDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + ++G + I DTAG+R+ D VE+ GI+R + E+E AD Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQAD 297 Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDH---LI 343 +L + + + + P + + K+D+ +E H + Sbjct: 298 RVLFMVDGTTTDAVDPADIWPDFIARLPAKLPITVVRNKADITGETLGLSEVNSHSLVRL 357 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401 S+ TGEG++ L N +K + + + + +RHL L++ +LE A L G Sbjct: 358 SARTGEGVDVLRNHLKQSMGFE-TNMEGGFLARRRHLQALAEAAEHLEQGKAQLLGAWAG 416 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LRLA +L +ITG + LL IFS FCIGK Sbjct: 417 -ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454 >gi|54299006|ref|YP_125375.1| tRNA modification GTPase TrmE [Legionella pneumophila str. Paris] gi|81822476|sp|Q5X0M3|MNME_LEGPA RecName: Full=tRNA modification GTPase mnmE gi|53752791|emb|CAH14226.1| hypothetical protein lpp3073 [Legionella pneumophila str. Paris] Length = 446 Score = 270 bits (690), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 165/450 (36%), Positives = 262/450 (58%), Gaps = 22/450 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A++T + I+R+SGP + + + K PR A+ + + +LD+GL Sbjct: 4 DTIVAIATPPGRGGVGIVRISGPKAYAIALCLNGNKALQPRLATFCSLYKGNNEVLDQGL 63 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 ++ F P SFTGED E HG V++ +++E + RLA PGEFS RAF N KIDL Sbjct: 64 VLYFKGPHSFTGEDIIEIQAHGSPVVLDLLIKE-SIAAGARLARPGEFSERAFLNDKIDL 122 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED-- 183 ++AE++ADLI + ++ R++++ + G+ S Q ++L ++R ++EA +DF EEE Sbjct: 123 IQAEAIADLIQASSDTAARMALKSLQGDFSKKINQLNEELIYLRMYVEAAIDFPEEEIDF 182 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 + + + ++L I+ +I S +QG L +R G +VI G NAGKS+L N LA +D Sbjct: 183 LNDGNVSQLLQRIIGRLEEIRSQANQGVL---LREGLSLVIAGRPNAGKSTLINNLAGRD 239 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303 VAIVT+I GTTRD++ + L+ + I DTAG+R++DD+VEKEGIKR + E++ AD +L Sbjct: 240 VAIVTEIAGTTRDIMREHILLDDIPLHIIDTAGLRDSDDLVEKEGIKRAWQELKRADCVL 299 Query: 304 LLKEINSKKE---------ISFPKNIDFIFIGTKSDL--YSTYTEEYDHLISSFTGEGLE 352 L+ +IN++ + ++ P I I + K D + +E+ +S+ TGEGL+ Sbjct: 300 LVVDINNRDQQNSLLNELRLTLPNKIPIITVYNKIDTTKLTAKCDEHTVYLSAKTGEGLD 359 Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL--EMASLNEKDCGLDIIAENLR 410 EL IK ++ ++ + +RHL L + L + L G +++AE+LR Sbjct: 360 ELKKVIKQVVG--YQPTEGQFLARRRHLQALDEAKALLLTGQSQLTNHKAG-ELLAEDLR 416 Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LA +L +ITG + LL IFS FCIGK Sbjct: 417 LAHQTLCEITGEFTSDDLLGKIFSSFCIGK 446 >gi|320170767|gb|EFW47666.1| tRNA modification GTPase TrmE [Capsaspora owczarzaki ATCC 30864] Length = 585 Score = 270 bits (690), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 153/457 (33%), Positives = 265/457 (57%), Gaps = 22/457 (4%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC--KKKKPFPRKASL-RYFFGLDGR 59 ++++I+A++T + ++++RLSG + E + +K PR+A L R Sbjct: 132 QQRDSIYALATAPGRAGVAVVRLSGRAAGIAIERMTGSAQKSKTPRQAHLCRLVHPTTKE 191 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 +D +++ FP P SFTGED AEFH+HGG +++ + E L+++P+ R+A+ GEF++RAF Sbjct: 192 HIDDAIVLWFPGPRSFTGEDVAEFHIHGGRSIIEALFEALSELPDTRMADAGEFTKRAFF 251 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NGKIDL E E LADLI++ET QR+ ++ ++G +S + +W + + +E ++DF+ Sbjct: 252 NGKIDLTEVEGLADLINAETRAQRQQALRQLNGAMSRTFEEWRRTILKSMAHVEGNIDFA 311 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 E ED++ + ++ + L+++I++ ++ + GE +R+G + I+G N GKSSL N + Sbjct: 312 ETEDIEENVMQSAISAVQTLRHEIAASLNDSRRGERLRSGVSVAIVGAPNVGKSSLLNIM 371 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 +++ AIV+ GTTRD+L + LD+ GY + + DTAG+R++D+ +E+EGIKR Sbjct: 372 SQRPTAIVSATAGTTRDILEVPLDIGGYPLLLCDTAGMRDSDEEIEQEGIKRARARAHAC 431 Query: 300 DLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTY-TEEYDHLI-------------SS 345 DL L + + SK + P + + G + + T E L+ S Sbjct: 432 DLRLCVFD-ASKLDSVDPSILQLVQPGMSLPIINKIDTVEASQLVIPPEILAAKPVFLSC 490 Query: 346 FTGEGLEELINKIKSILSNKFKKLP--FSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLD 403 +GEG+ L+ ++ L + + ++ + RH L V +L+ + D + Sbjct: 491 KSGEGVSVLLERLTLELKQRCESETGETALITQWRHRTQLQTCVAHLDHFLEDLSD--VA 548 Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 I AE+LR A +LG+ITG VD+E++LD+IF FCIGK Sbjct: 549 IAAEHLRQAVRALGQITGRVDIEEILDVIFRDFCIGK 585 >gi|58696937|ref|ZP_00372434.1| tRNA modification GTPase TrmE [Wolbachia endosymbiont of Drosophila simulans] gi|58536832|gb|EAL60048.1| tRNA modification GTPase TrmE [Wolbachia endosymbiont of Drosophila simulans] Length = 414 Score = 270 bits (690), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 162/410 (39%), Positives = 249/410 (60%), Gaps = 16/410 (3%) Query: 40 KKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEEL 99 KK+ PR A+L + +++D G++I FP+P SFTGED E VHG AV+ ILEEL Sbjct: 12 KKEIKPRFATLVDLYDDSSQLIDNGIIIYFPAPNSFTGEDVIELQVHGSKAVIKIILEEL 71 Query: 100 AKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYG 159 +K+ +A PGEFS RAF NGK DL + E +ADLI +ET+MQ + +++ +SGEL LY Sbjct: 72 SKV--FVMAKPGEFSLRAFLNGKFDLTQIEGIADLIDAETKMQAKQAIKQISGELERLYS 129 Query: 160 QWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG 219 W +L I+S IEA +DF E+ + +++ N++ L I H++ + GE +R G Sbjct: 130 NWRQRLITIQSKIEAYIDFPEDIWAEKSELEKINNEVQSLVRLIQEHLNDNRRGERLREG 189 Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 IVI G N GKS+LFN LAK+D+AIV++ GTTRD+L +D+ GY + +SDTAGIRE Sbjct: 190 LHIVITGEPNVGKSTLFNFLAKRDIAIVSEYAGTTRDILEAHIDIGGYPIILSDTAGIRE 249 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP-KNIDFIFIGTKS-DLYSTYTE 337 + D +E EGI R ADL + L + I+ N D I++ +K+ D+ + + Sbjct: 250 SSDPIELEGISRAKKRSFEADLRIELFPFEQRPNINCNVVNSDTIYVLSKADDVINNHDI 309 Query: 338 EYDHL----ISSFTGEGLEELINKIKSILSNKF---KKLPFSIPSHKRHLYHLSQTVRYL 390 + + + +S G G +LI+ IK KF + P + + +RH H+ + + +L Sbjct: 310 KINGIDLLPVSILKGIGTNKLISLIKEKAEEKFGHDRDTP--VITRQRHRNHMQKALEHL 367 Query: 391 EMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + ++ D +++I+E+LRLA+ LG + G +DVE++L +FS FC+GK Sbjct: 368 QRFNI---DNPIELISEDLRLAAFELGAVIGIIDVEEILSSVFSNFCVGK 414 >gi|157155417|ref|YP_001465191.1| tRNA modification GTPase TrmE [Escherichia coli E24377A] gi|166991107|sp|A7ZTR2|MNME_ECO24 RecName: Full=tRNA modification GTPase mnmE gi|157077447|gb|ABV17155.1| tRNA modification GTPase TrmE [Escherichia coli E24377A] Length = 454 Score = 270 bits (690), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 168/459 (36%), Positives = 255/459 (55%), Gaps = 29/459 (6%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63 + +TI A +T + I+R+SG +V E + K P PR A F DG +LD+ Sbjct: 3 DNDTIVAQATPPGRGGVGILRISGFKAREVAETVLGKL-PKPRYADYLPFKDADGSVLDQ 61 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 G+ + FP P SFTGED E HGG +++ +L+ + +P LR+A PGEFS RAF K+ Sbjct: 62 GIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLYDKL 121 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL +AE++ADLI + +E R ++ + G S+ ++ LTH+R ++EA +DF +EE Sbjct: 122 DLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE- 180 Query: 184 VQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 + S ++ LND++ D+ + ++ + G ++R G K+VI G NAGKSSL NALA Sbjct: 181 IDFLSDGKIEAQLNDVI---ADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+E AD Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 297 Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDHL---I 343 +L + + + + P + + K+D+ +E H + Sbjct: 298 RVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRL 357 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401 S+ TGEG+E L N +K + + + +RHL L Q +L+ A L G Sbjct: 358 SARTGEGVEVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG 416 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LRLA +L +ITG + LL IFS FCIGK Sbjct: 417 -ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454 >gi|288819136|ref|YP_003433484.1| tRNA modification GTPase [Hydrogenobacter thermophilus TK-6] gi|288788536|dbj|BAI70283.1| tRNA modification GTPase [Hydrogenobacter thermophilus TK-6] gi|308752720|gb|ADO46203.1| tRNA modification GTPase TrmE [Hydrogenobacter thermophilus TK-6] Length = 450 Score = 270 bits (689), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 169/459 (36%), Positives = 275/459 (59%), Gaps = 28/459 (6%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQ-VCEFICKKKKPFPRKASLRYFFGL--- 56 M ++E I A++T SAI +IR+SG + V +++ K + PR A +FF L Sbjct: 1 MVKQREPIIAIATPYGESAIGMIRISGLGVLEKVKKYVRTKGEIKPRYA---HFFALLDE 57 Query: 57 DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 DG++LD+G+LI + SP S+TGED E +HG ++ LE K +RLA PGEF++R Sbjct: 58 DGQVLDEGVLIYYKSPASYTGEDMIEMCLHGNPLILKRALELFLK-EGIRLAEPGEFTKR 116 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NGK+D+ +AE++ADLI+++T++ R++++ + GELS +KL + +++EAD+ Sbjct: 117 AFLNGKLDMTQAEAVADLINAKTDLARKVAIRQLQGELSKYVNSLREKLIQLLAYVEADI 176 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 +FSE+ D+ S +E+L + ++N I + +S K GE++R G + I+G N GKSSLF Sbjct: 177 EFSEQ-DIPTISREEILQVLKEVQNSIETLMSTVKAGELLRKGINLAIVGKPNVGKSSLF 235 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 NAL ++ AIVT++PGTTRD L+ +L +EG + + DTAGIRET+D+VE G+KR+ + Sbjct: 236 NALLGRERAIVTEVPGTTRDFLSEELHMEGVPINLIDTAGIRETEDVVESIGVKRSIDSI 295 Query: 297 ENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDL---YSTYTEEYDHL-ISSF 346 +AD++L + + + E + K D I + K DL S D + +S+ Sbjct: 296 NSADMVLFVVDASKPLEKDDWDVYNLVKQRDHIKVLNKVDLGLDPSIAKIFPDGVRVSAK 355 Query: 347 TGEGLEELINKIKSILSNKFKKLPF---SIPSHKRHLYHLSQTVRYLE--MASLNEKDCG 401 G+G+++L K ++ K + + RH L +++ +E + SL ++D Sbjct: 356 MGDGMQDL----KKVMLEKLGVFGYEGMKVYVSARHAQLLKKSLEIIEPLIHSLEKQDIS 411 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +I+A LR A V L ++ G + E +L IFS+FCIGK Sbjct: 412 PEILALELREALVYLDEMVGAITTEDVLSAIFSRFCIGK 450 >gi|323189559|gb|EFZ74839.1| tRNA modification GTPase TrmE [Escherichia coli RN587/1] Length = 454 Score = 270 bits (689), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 165/456 (36%), Positives = 252/456 (55%), Gaps = 23/456 (5%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63 + +TI A +T + I+R+SG +V E + K P PR A F DG +LD+ Sbjct: 3 DNDTIVAQATPPGRGGVGILRISGLKAREVAETVLGKL-PKPRYADYLPFKDADGSVLDQ 61 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 G+ + FP P SFTGED E HGG +++ +L+ + +P LR+A PGEFS RAF N K+ Sbjct: 62 GIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKL 121 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL +AE++ADLI + +E R ++ + G S+ ++ LTH+R ++EA +DF +EE Sbjct: 122 DLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE- 180 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 + S ++ + + D+ + ++ + G ++R G K+VI G NAGKSSL NALA ++ Sbjct: 181 IDFLSDGKIEAQLNNVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGRE 240 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303 AIVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+E AD +L Sbjct: 241 AAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVL 300 Query: 304 LLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDHL---ISSF 346 + + + + P + + K+D+ E H +S+ Sbjct: 301 FMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMNELNGHALIRLSAR 360 Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDI 404 TGEG++ L N +K + + + +RHL L Q +L+ A L G ++ Sbjct: 361 TGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG-EL 418 Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +AE LRLA +L +ITG + LL IFS FCIGK Sbjct: 419 LAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454 >gi|14195273|sp|Q9CLQ1|MNME_PASMU RecName: Full=tRNA modification GTPase mnmE Length = 452 Score = 270 bits (689), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 172/458 (37%), Positives = 256/458 (55%), Gaps = 29/458 (6%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64 KETI A +T I I+R+SGP +V + K P PR A F DG +LD+G Sbjct: 2 KETIVAQATAPGRGGIGILRVSGPKAVEVAHTVLGKC-PKPRMADYLPFKDSDGNVLDQG 60 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 + + F +P SFTGED E HGG V++ +L+ + ++ LRLA PGEFS +AF N K+D Sbjct: 61 IALYFKAPHSFTGEDVLELQGHGGQVVLDLLLKRILQLEGLRLARPGEFSEQAFLNDKLD 120 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ADLI + +E R +++ + GE S+ Q +D + ++R+++EA +DF +EE + Sbjct: 121 LAQAEAIADLIDASSEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEAAIDFPDEE-I 179 Query: 185 QNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 + ++ LNDI+ + + S+ K G I+R G K+VI G NAGKSSL NALA Sbjct: 180 DFLADGKIEAHLNDIITQLDHVR---SEAKQGSILREGMKVVIAGRPNAGKSSLLNALAG 236 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 ++ AIVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI R + E+E AD Sbjct: 237 REAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREATDEVERIGIVRAWSEIEQADR 296 Query: 302 ILL-----------LKEINSKKEISFPKNIDFIFIGTKSDLYST---YTEEYDHLI---S 344 ILL L+++ S+ P NI + K+DL E+ + + S Sbjct: 297 ILLMLDSTEADNQDLEKVRSEFLTKLPSNIPVTIVRNKADLSGENEGIVEQNGYTVITLS 356 Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGL 402 + T +G+ L +K + + + + +RHL L Q +L+ L + G Sbjct: 357 AKTQQGIALLREHLKQSMGYQ-TNMEGGFLARRRHLEALEQAATHLQQGHVQLTQFYAG- 414 Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LR L +ITG + LL IFS FCIGK Sbjct: 415 ELLAEELRRVQNHLSEITGQFTSDDLLGNIFSSFCIGK 452 >gi|15603031|ref|NP_246103.1| tRNA modification GTPase TrmE [Pasteurella multocida subsp. multocida str. Pm70] gi|12721514|gb|AAK03250.1| ThdF [Pasteurella multocida subsp. multocida str. Pm70] Length = 465 Score = 270 bits (689), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 172/458 (37%), Positives = 256/458 (55%), Gaps = 29/458 (6%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64 KETI A +T I I+R+SGP +V + K P PR A F DG +LD+G Sbjct: 15 KETIVAQATAPGRGGIGILRVSGPKAVEVAHTVLGKC-PKPRMADYLPFKDSDGNVLDQG 73 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 + + F +P SFTGED E HGG V++ +L+ + ++ LRLA PGEFS +AF N K+D Sbjct: 74 IALYFKAPHSFTGEDVLELQGHGGQVVLDLLLKRILQLEGLRLARPGEFSEQAFLNDKLD 133 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ADLI + +E R +++ + GE S+ Q +D + ++R+++EA +DF +EE + Sbjct: 134 LAQAEAIADLIDASSEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEAAIDFPDEE-I 192 Query: 185 QNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 + ++ LNDI+ + + S+ K G I+R G K+VI G NAGKSSL NALA Sbjct: 193 DFLADGKIEAHLNDIITQLDHVR---SEAKQGSILREGMKVVIAGRPNAGKSSLLNALAG 249 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 ++ AIVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI R + E+E AD Sbjct: 250 REAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREATDEVERIGIVRAWSEIEQADR 309 Query: 302 ILL-----------LKEINSKKEISFPKNIDFIFIGTKSDLYST---YTEEYDHLI---S 344 ILL L+++ S+ P NI + K+DL E+ + + S Sbjct: 310 ILLMLDSTEADNQDLEKVRSEFLTKLPSNIPVTIVRNKADLSGENEGIVEQNGYTVITLS 369 Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGL 402 + T +G+ L +K + + + + +RHL L Q +L+ L + G Sbjct: 370 AKTQQGIALLREHLKQSMGYQ-TNMEGGFLARRRHLEALEQAATHLQQGHVQLTQFYAG- 427 Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LR L +ITG + LL IFS FCIGK Sbjct: 428 ELLAEELRRVQNHLSEITGQFTSDDLLGNIFSSFCIGK 465 >gi|163859322|ref|YP_001633620.1| tRNA modification GTPase TrmE [Bordetella petrii DSM 12804] gi|205829119|sp|A9IJ97|MNME_BORPD RecName: Full=tRNA modification GTPase mnmE gi|163263050|emb|CAP45353.1| putative tRNA modification GTPase [Bordetella petrii] Length = 452 Score = 270 bits (689), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 169/450 (37%), Positives = 254/450 (56%), Gaps = 23/450 (5%) Query: 8 IFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLI 67 I A++T I ++R+SGP + + ++ PR A F G LD+G+ + Sbjct: 9 IAAIATAPGRGGIGVVRISGPDLSALARRLFGREL-TPRHAHYLPFTAETGEHLDEGIAL 67 Query: 68 VFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP---NLRLANPGEFSRRAFENGKID 124 F +P+S+TGED E HGG AV+ ILE + +RLA PGEF+RRAF N ++D Sbjct: 68 YFRAPQSYTGEDVLELQGHGGPAVLRRILERCLQAGADLGVRLAEPGEFTRRAFLNDRMD 127 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED- 183 L +AE++ADLI + + R +M +SGE S+ D++ H+R +EA LDF EEE Sbjct: 128 LAQAEAVADLIDASSVAAARGAMASLSGEFSARVNALSDRIVHLRMLVEATLDFPEEEID 187 Query: 184 -VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 ++ + ++ L L D+++ I+Q + G I+R G +V+ G N GKSSL NALA Sbjct: 188 FLEKYQARPTLQ---ALAADLATLIAQARQGVILREGLHVVLAGKPNVGKSSLLNALAGD 244 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 D+AIVT I GTTRD + ++ ++G + I DTAG+R+TDD VE GI RT+ E+E AD+I Sbjct: 245 DIAIVTPIAGTTRDKVVQEIHIDGVPLHIVDTAGLRDTDDTVESIGIARTWKEIERADVI 304 Query: 303 LLLK-------EINSKKEISFPKNIDFIFIGTKSDLY-STYTEEYDHL-ISSFTGEGLEE 353 L L+ E++++ P + + K DL + + L IS+ G GL+E Sbjct: 305 LHLQDATQPADELDAQIVARLPARTPLLTVFNKVDLLDQPFQAQAGQLGISAREGAGLDE 364 Query: 354 LINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LNEKDCGLDIIAENLR 410 L ++ ++ N + P+ + +RH++ L + +LE A+ + D LD+ AE LR Sbjct: 365 LRARLLALAGWNPGAESPWL--ARERHVHALQRAAEHLEAATEHAAQDDRVLDLFAEELR 422 Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LA SL ITG + LL IFS FCIGK Sbjct: 423 LAHDSLSSITGKFTSDDLLGEIFSSFCIGK 452 >gi|117918464|ref|YP_867656.1| tRNA modification GTPase TrmE [Shewanella sp. ANA-3] gi|166991117|sp|A0KR31|MNME_SHESA RecName: Full=tRNA modification GTPase mnmE gi|117610796|gb|ABK46250.1| tRNA modification GTPase TrmE [Shewanella sp. ANA-3] Length = 453 Score = 270 bits (689), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 166/453 (36%), Positives = 256/453 (56%), Gaps = 21/453 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + IIR+SG V + P PR A F G+++D+G+ Sbjct: 4 DTIVAQATAPGRGGVGIIRISGDKATDVAMAVLGHL-PKPRYADYCDFKNASGQVIDQGI 62 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + F P SFTGED E HGG V++ +++ + ++ +R+A PGEFS +AF N K+DL Sbjct: 63 ALFFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVLEVEGIRIAKPGEFSEQAFMNDKLDL 122 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E + +++ + GE S + +D++TH+R ++EA +DF +EE V Sbjct: 123 TQAEAIADLIDATSEQAAKSALQSLQGEFSKEVHELVDQVTHLRLYVEAAIDFPDEE-VD 181 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S ++ N + + + +S+ + K G IIR G K+VI G NAGKSSL NALA K+ A Sbjct: 182 FLSDGKIANALYKIIDKLSAVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKESA 241 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVT+I GTTRDVL + L+G + I DTAG+R+T D VE+ GI+R + E+ +AD +L + Sbjct: 242 IVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTTDTVEQIGIERAWNEINSADRVLFM 301 Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYS---TYTEEYD---HLISSFTG 348 + + + P N+ + K+DL TEE + IS+ TG Sbjct: 302 VDGTTTDAVDPHDIWPDFINRLPANLGVTVVRNKADLTGENLAMTEEKGYSVYRISAKTG 361 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407 G+EEL +KS++ K L + +RHL L +L++ E +++AE Sbjct: 362 LGVEELKQHLKSLMGYK-SNLEGGFIARRRHLEALDVAASHLQLGKEQLEIYLAGELLAE 420 Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LR+A ++L +ITG + LL IFS FCIGK Sbjct: 421 ELRMAQLALSEITGRFTSDDLLGKIFSSFCIGK 453 >gi|307611884|emb|CBX01600.1| hypothetical protein LPW_32871 [Legionella pneumophila 130b] Length = 446 Score = 270 bits (689), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 165/450 (36%), Positives = 262/450 (58%), Gaps = 22/450 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A++T + I+R+SGP+ + + + K PR A+ + + +LD+GL Sbjct: 4 DTIVAIATPPGRGGVGIVRISGPNAYAIALCLNGNKALQPRLATFCSLYKGNNEVLDQGL 63 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 ++ F P SFTGED E HG V++ +++E + RLA PGEFS RAF N KIDL Sbjct: 64 VLYFKGPHSFTGEDVIEIQAHGSPVVLDLLIKE-SIAAGARLARPGEFSERAFLNDKIDL 122 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED-- 183 ++AE++ADLI + ++ R++++ + G+ S Q ++L ++R ++EA +DF EEE Sbjct: 123 IQAEAIADLIQASSDTAARMALKSLQGDFSKKINQLNEELIYLRMYVEAAIDFPEEEIDF 182 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 + + + ++L I+ +I S +QG L +R G +VI G NAGKS+L N LA +D Sbjct: 183 LNDGNVSQLLQRIIGRLEEIRSQANQGVL---LREGLSLVIAGRPNAGKSTLINNLAGRD 239 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303 VAIVT+I GTTRD++ + L+ + I DTAG+R++DD+VEKEGIKR + E++ AD +L Sbjct: 240 VAIVTEIAGTTRDIMREHILLDDIPLHIIDTAGLRDSDDLVEKEGIKRAWQELKRADCVL 299 Query: 304 LLKEINSKKE---------ISFPKNIDFIFIGTKSDL--YSTYTEEYDHLISSFTGEGLE 352 L+ +IN+ + ++ P I I + K D + +E+ +S+ TGEGL+ Sbjct: 300 LVVDINNPDQQDSLLNELRLTLPNKIPIITVYNKIDTTKLTAKCDEHTVYLSAKTGEGLD 359 Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL--EMASLNEKDCGLDIIAENLR 410 EL IK ++ ++ + +RHL L + L + L G +++AE+LR Sbjct: 360 ELKKVIKQVVG--YQPTEGQFLARRRHLQALDEAKALLLTGQSQLTNHKAG-ELLAEDLR 416 Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LA +L +ITG + LL IFS FCIGK Sbjct: 417 LAHQTLCEITGEFTSDDLLGKIFSSFCIGK 446 >gi|193069233|ref|ZP_03050190.1| tRNA modification GTPase TrmE [Escherichia coli E110019] gi|260857883|ref|YP_003231774.1| GTPase TrmE [Escherichia coli O26:H11 str. 11368] gi|192957557|gb|EDV88003.1| tRNA modification GTPase TrmE [Escherichia coli E110019] gi|257756532|dbj|BAI28034.1| GTPase TrmE [Escherichia coli O26:H11 str. 11368] gi|323155383|gb|EFZ41566.1| tRNA modification GTPase TrmE [Escherichia coli EPECa14] Length = 454 Score = 270 bits (689), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 167/459 (36%), Positives = 255/459 (55%), Gaps = 29/459 (6%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63 + +TI A +T + I+R+SG +V E + K P PR A F DG +LD+ Sbjct: 3 DNDTIVAQATPPGRGGVGILRISGLKAREVAETVLGKL-PKPRYADYLPFKDADGSVLDQ 61 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 G+ + FP P SFTGED E HGG +++ +L+ + +P LR+A PGEFS RAF K+ Sbjct: 62 GIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLYDKL 121 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL +AE++ADLI + +E R ++ + G S+ ++ LTH+R ++EA +DF +EE Sbjct: 122 DLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE- 180 Query: 184 VQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 + S ++ LND++ D+ + ++ + G ++R G K+VI G NAGKSSL NALA Sbjct: 181 IDFLSDGKIEAQLNDVI---ADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+E AD Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 297 Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDHL---I 343 +L + + + + P + + K+D+ +E H + Sbjct: 298 RVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRL 357 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401 S+ TGEG++ L N +K + + + +RHL L Q +L+ A L G Sbjct: 358 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG 416 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LRLA +L +ITG + LL IFS FCIGK Sbjct: 417 -ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454 >gi|308802255|ref|XP_003078441.1| COG0486: Predicted GTPase (ISS) [Ostreococcus tauri] gi|116056893|emb|CAL53182.1| COG0486: Predicted GTPase (ISS) [Ostreococcus tauri] Length = 496 Score = 270 bits (689), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 165/484 (34%), Positives = 249/484 (51%), Gaps = 50/484 (10%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFI-------------CKKKKPFPRKASLRY 52 ETI+AV+T + +S+ R+SGP+ + + + R Sbjct: 14 ETIYAVATARGRAGVSVTRVSGPNALEALRLARAMETSSPSSTASTSRANDVDGRLRYRA 73 Query: 53 FFGLDGRI----LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLA 108 F + R LD G + + +P SFTGED EFH HG +A +L+ L + R A Sbjct: 74 FVDPNARAGEPPLDVGFVATWRAPRSFTGEDVVEFHGHGSVATQRALLDALGTIDGFRHA 133 Query: 109 NPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSME-GMSGELSSLYGQWIDKLTH 167 GEF+RRAF NGK+DL AE LADL+ +ETE QRR +M +G ++Y +W D+L Sbjct: 134 EAGEFARRAFLNGKMDLTAAEGLADLLDAETEAQRRQAMRLTANGTQRAMYERWRDELMT 193 Query: 168 IRSFIEADLDFSEEEDVQ-NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILG 226 + EA +DF EEEDV + ++VL L+ + H+ GE+IR G ++ I+G Sbjct: 194 CAAHCEAVIDFGEEEDVSGDVVERDVLTRATALRETLRKHLDAPARGEMIRRGVRVAIVG 253 Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEK 286 N GKSS+ NALA +D AIV+ GTTRDVL I L+L GY V +SDTAGIRETDD VEK Sbjct: 254 APNVGKSSMLNALAGRDAAIVSPRAGTTRDVLEISLELNGYKVIVSDTAGIRETDDDVEK 313 Query: 287 EGIKRTFLEVENADLILLLKEINSKKEISFPKNI---------DFIFIGTKSDLY-STYT 336 G+ R +AD+++ L + +S ++ D I + KSD+ + Sbjct: 314 MGVARALERARDADVLVALADASSDASSDAARDALSTVDVTGKDVITVWNKSDVIDAARA 373 Query: 337 EEYD-------------HLISSFTGEGLEELINKIKSILSNKFKKLPFS-------IPSH 376 E D ++S+ G G+++ I + +++ K ++ + Sbjct: 374 RELDARVDDITRRGGDARVVSARDGRGVDDFIATLARVVARKCERTSVEGDDDDALAVTR 433 Query: 377 KRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKF 436 RH +L+ V + L++ AE+ RLA+ +L ++TG DVE +LD++F F Sbjct: 434 SRHRVNLTSCV-AALERAARRAPVPLELRAEDFRLAARALARVTGSYDVEDVLDVVFRDF 492 Query: 437 CIGK 440 C+GK Sbjct: 493 CVGK 496 >gi|148361342|ref|YP_001252549.1| thiophene/furan oxidation GTPase [Legionella pneumophila str. Corby] gi|296108683|ref|YP_003620384.1| GTP binding protein in thiophene and furan oxidation (GTPase) [Legionella pneumophila 2300/99 Alcoy] gi|205415773|sp|A5IIK3|MNME_LEGPC RecName: Full=tRNA modification GTPase mnmE gi|148283115|gb|ABQ57203.1| GTP binding protein in thiophene and furan oxidation (GTPase) [Legionella pneumophila str. Corby] gi|295650585|gb|ADG26432.1| GTP binding protein in thiophene and furan oxidation (GTPase) [Legionella pneumophila 2300/99 Alcoy] Length = 446 Score = 269 bits (688), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 165/450 (36%), Positives = 262/450 (58%), Gaps = 22/450 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A++T + I+R+SGP+ + + + K PR A+ + + +LD+GL Sbjct: 4 DTIVAIATPPGRGGVGIVRISGPNAYAIALCLNGNKALQPRLATFCSLYKGNNEVLDQGL 63 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 ++ F P SFTGED E HG V++ +++E + RLA PGEFS RAF N KIDL Sbjct: 64 VLYFKGPHSFTGEDVIEIQAHGSPVVLDLLIKE-SIAAGARLARPGEFSERAFLNDKIDL 122 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED-- 183 ++AE++ADLI + ++ R++++ + G+ S Q ++L ++R ++EA +DF EEE Sbjct: 123 IQAEAIADLIQASSDTAARMALKSLQGDFSKKINQLNEELIYLRMYVEAAIDFPEEEIDF 182 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 + + + ++L I+ +I S +QG L +R G +VI G NAGKS+L N LA +D Sbjct: 183 LNDGNVSQLLQRIIGRLEEIRSQANQGVL---LREGLSLVIAGRPNAGKSTLINNLAGRD 239 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303 VAIVT+I GTTRD++ + L+ + I DTAG+R++DD+VEKEGIKR + E++ AD +L Sbjct: 240 VAIVTEIAGTTRDIMREHILLDDIPLHIIDTAGLRDSDDLVEKEGIKRAWQELKRADCVL 299 Query: 304 LLKEINSKKE---------ISFPKNIDFIFIGTKSDL--YSTYTEEYDHLISSFTGEGLE 352 L+ +IN+ + ++ P I I + K D + +E+ +S+ TGEGL+ Sbjct: 300 LVVDINNPDQQNSLLNELRLTLPNKIPIITVYNKIDTTKLTAKCDEHTVYLSAKTGEGLD 359 Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL--EMASLNEKDCGLDIIAENLR 410 EL IK ++ ++ + +RHL L + L + L G +++AE+LR Sbjct: 360 ELKKVIKQVVG--YQPTEGQFLARRRHLQALDEAKALLLTGQSQLTNHKAG-ELLAEDLR 416 Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LA +L +ITG + LL IFS FCIGK Sbjct: 417 LAHQTLCEITGEFTSDDLLGKIFSSFCIGK 446 >gi|271502718|ref|YP_003335744.1| tRNA modification GTPase TrmE [Dickeya dadantii Ech586] gi|270346273|gb|ACZ79038.1| tRNA modification GTPase TrmE [Dickeya dadantii Ech586] Length = 454 Score = 269 bits (688), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 165/460 (35%), Positives = 255/460 (55%), Gaps = 26/460 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+H +TI A +T + I+R+SG V + + K P PR A F +DG + Sbjct: 1 MSH-TDTIVAQATPPGRGGVGILRISGRQASAVAQAVLGKL-PKPRYADYLPFHDVDGSV 58 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG +++ +L+ + +P +R+A PGEFS RAF N Sbjct: 59 LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRVVALPGVRIARPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + +E R ++ + G SS Q ++ LTH+R ++EA +DF + Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSAVNSLQGVFSSRVHQLVEALTHLRIYVEAAIDFPD 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + S ++ + + D+ + + G ++R G K+VI G NAGKSSL NALA Sbjct: 179 EE-IDFLSDGKIEAMLNAVIGDLEGVRGEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 +D AIVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+E AD Sbjct: 238 GRDAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 297 Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTY--TEEYDHL----I 343 +L + + + + P + + K+D+ EE + + Sbjct: 298 RVLFMVDGTTTDAVEPAAIWPEFMARLPSRLPITVVRNKADVTGEPLGIEEVNTYSLIRL 357 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL- 402 S+ TG+G++ L + +K + + +RHL L Q ++L+ +E+ G Sbjct: 358 SARTGDGVDLLRDHLKQSMGFT-SNTEGGFLARRRHLQALEQAAQHLQQG--HEQLVGAY 414 Query: 403 --DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LRLA +L +ITG + LL IFS FCIGK Sbjct: 415 AGELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454 >gi|126730104|ref|ZP_01745916.1| tRNA modification GTPase [Sagittula stellata E-37] gi|126709484|gb|EBA08538.1| tRNA modification GTPase [Sagittula stellata E-37] Length = 427 Score = 269 bits (688), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 168/437 (38%), Positives = 252/437 (57%), Gaps = 13/437 (2%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TIFA+++ S ++++R+SG ++ + + P PR+ LR G +DK + Sbjct: 2 DTIFALASAPGRSGVAVVRVSGDRSWEAVKALAGSV-PEPRRMVLRTLRDTSGAHVDKAM 60 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 ++VF + SFTGE+SAEFH+HG IAVV IL EL+ + R A PGEF+RRA ENG +D Sbjct: 61 VVVFAAGASFTGEESAEFHLHGSIAVVRAILLELSLLEGCRPAQPGEFTRRALENGCMDF 120 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 + E+LADLI +ETE QR+ ++ +SG LS +W KL S +E +DF +EDV Sbjct: 121 TQVEALADLIEAETEGQRKQALAVLSGALSGRVSEWRQKLVRAASLLEVTIDFV-DEDVP 179 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 + EV+ + + +DI + + E +R G+++ I+G NAGKS+L N LA +D A Sbjct: 180 VDVAGEVVGLLKDVLSDIQAELRGLDAAERVRMGFEVAIVGPPNAGKSTLLNNLAGRDAA 239 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 I ++I GTTRDV+ + +D+ G V DTAG+RET+D VE+ GI E ADL + L Sbjct: 240 ITSEIAGTTRDVIEVRMDVGGLPVTFLDTAGLRETEDPVERLGIDLARRRAEAADLRVHL 299 Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365 E + EI ++ D + K D S D +S TG G+ ++++I L + Sbjct: 300 VERGGQPEIGV-RSGDVVRW-AKDDSGS-----LDDGLSGRTGYGVARVLSEIAEELLER 352 Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLASVSLGKITGCV 423 + S+ S +RH L ++ +LE A L +DI++E++RL L + G V Sbjct: 353 TAGM--SLTSRERHRDSLVRSQMFLERAVSGLESGMSEVDILSEDIRLGIRQLEILVGRV 410 Query: 424 DVEQLLDIIFSKFCIGK 440 +VE LLD IFS FCIGK Sbjct: 411 EVEHLLDEIFSSFCIGK 427 >gi|54295838|ref|YP_128253.1| tRNA modification GTPase TrmE [Legionella pneumophila str. Lens] gi|81822283|sp|Q5WSF0|MNME_LEGPL RecName: Full=tRNA modification GTPase mnmE gi|53755670|emb|CAH17173.1| hypothetical protein lpl2929 [Legionella pneumophila str. Lens] Length = 446 Score = 269 bits (688), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 165/450 (36%), Positives = 262/450 (58%), Gaps = 22/450 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A++T + I+R+SGP+ + + + K PR A+ + + +LD+GL Sbjct: 4 DTIVAIATPPGRGGVGIVRISGPNAYAIALCLNGNKALQPRLATFCSLYKGNNEVLDQGL 63 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 ++ F P SFTGED E HG V++ +++E + RLA PGEFS RAF N KIDL Sbjct: 64 VLYFKGPHSFTGEDVIEIQAHGSPVVLDLLIKE-SIAAGARLARPGEFSERAFLNDKIDL 122 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED-- 183 ++AE++ADLI + ++ R++++ + G+ S Q ++L ++R ++EA +DF EEE Sbjct: 123 IQAEAIADLIQASSDTAARMALKSLQGDFSKKINQLNEELIYLRMYVEAAIDFPEEEIDF 182 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 + + + ++L I+ +I S +QG L +R G +VI G NAGKS+L N LA +D Sbjct: 183 LNDGNVSQLLQRIIGRLEEIRSQANQGVL---LREGLSLVIAGRPNAGKSTLINNLAGRD 239 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303 VAIVT+I GTTRD++ + L+ + I DTAG+R++DD+VEKEGIKR + E++ AD +L Sbjct: 240 VAIVTEIAGTTRDIMREHILLDDIPLHIIDTAGLRDSDDLVEKEGIKRAWQELKRADCVL 299 Query: 304 LLKEINSKKE---------ISFPKNIDFIFIGTKSDL--YSTYTEEYDHLISSFTGEGLE 352 L+ +IN+ + ++ P I I + K D + +E+ +S+ TGEGL+ Sbjct: 300 LVVDINNPDQQNSLHNELKLTLPDKIPIITVYNKIDTTKLTAKCDEHTVYLSAKTGEGLD 359 Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL--EMASLNEKDCGLDIIAENLR 410 EL IK ++ ++ + +RHL L + L + L G +++AE+LR Sbjct: 360 ELKKVIKQVVG--YQPTEGQFLARRRHLQALDEAKALLLTGQSQLTNHKAG-ELLAEDLR 416 Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LA +L +ITG + LL IFS FCIGK Sbjct: 417 LAHQTLCEITGEFTSDDLLGKIFSSFCIGK 446 >gi|195035994|ref|XP_001989456.1| GH18796 [Drosophila grimshawi] gi|193893652|gb|EDV92518.1| GH18796 [Drosophila grimshawi] Length = 495 Score = 269 bits (688), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 161/470 (34%), Positives = 260/470 (55%), Gaps = 37/470 (7%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK--KKPFPRKASLRYFF-GLDGRILDK 63 TI+++S+G + +S+IR+SGP Q I +P R+A L+ F+ + I+D+ Sbjct: 27 TIYSLSSGHIKCGVSVIRVSGPQTKQALRAIVNNVDYEPKQRQAYLKSFYHPANKEIIDR 86 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 GLL+ FP P SFTGED+ EF VHG +AV+ +L+ L ++P LR A PGEF++RAF GK+ Sbjct: 87 GLLLWFPGPASFTGEDACEFQVHGSLAVIAAMLDALGQLPGLRPAQPGEFTKRAFFGGKL 146 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL E E LADLI +ETE QR+ ++ +G L+ LY W +L + +EA +DF+EEE Sbjct: 147 DLTEVEGLADLIHAETEAQRKQALLQSTGALARLYDNWRKRLIRCAAHLEAYIDFAEEEQ 206 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 ++ ++ ++ +K +I H++ + GE++R+G + VI+G N GKSSL N L ++ Sbjct: 207 IEGGVLLQLSRELNAVKREIRLHLNDQRQGELLRHGVRTVIIGAPNVGKSSLLNLLCQRA 266 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLI 302 V+IV + GTTRD++ + GY V +DTAG+R +T D +E EG+ R + +DL+ Sbjct: 267 VSIVAEKAGTTRDIIETTHNFGGYPVVFADTAGLRRDTTDTIEVEGMARAKQCLAQSDLV 326 Query: 303 LLLKEINSKKEI-----------SFPKNID----------FIFIGTKSD-LYSTYTEEYD 340 LLL + S +++ S+ + +D + K+D L + T+ Sbjct: 327 LLLADARSLRDVDNNKALAGYIESYLQELDIPAELCHGKRLQLVANKTDTLSAEETQRIG 386 Query: 341 HL----ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396 L +S + L E + ++ +L + P + H+ + Q R +E Sbjct: 387 KLNMLALSCHKQDNLAEFLGALEQLL-QQLCGTPQAEHPRITHMRYRQQLERCIEHIDTF 445 Query: 397 EKDCGLD------IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++D D I A+ LR + + +ITG V E +LD++F FCIGK Sbjct: 446 QRDYKPDVYPDMAIAAQQLRKSVRCIERITGHVSCEDILDVVFKDFCIGK 495 >gi|146284521|ref|YP_001174674.1| tRNA modification GTPase TrmE [Pseudomonas stutzeri A1501] gi|166234812|sp|A4VS81|MNME_PSEU5 RecName: Full=tRNA modification GTPase mnmE gi|145572726|gb|ABP81832.1| tRNA modification GTPase TrmE [Pseudomonas stutzeri A1501] Length = 455 Score = 269 bits (688), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 167/461 (36%), Positives = 253/461 (54%), Gaps = 35/461 (7%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64 ++TI AV+T + I+R+SGP + ++P PR A F DG ++D+G Sbjct: 5 RDTIAAVATAPGRGGVGIVRVSGPRARAIA-ITLSGREPTPRHAHYGPFHADDGEVIDEG 63 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 LL+ FP P SFTGED E H HGG V++ +L+ + +RLA PGEFS RAF N K+D Sbjct: 64 LLLFFPGPHSFTGEDVLELHGHGGPVVLDMLLQRCVDL-GVRLARPGEFSERAFLNDKLD 122 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ADLI + + R ++ + GE S Q ++L +R ++EA +DF EEE + Sbjct: 123 LAQAEAIADLIEASSAQAARNAVRSLQGEFSRRVHQLTERLIQLRIYVEAAIDFPEEE-I 181 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + VL + ++ ++S+ + + G ++R+G +VI G NAGKSSL NALA ++ Sbjct: 182 DFLADGHVLAQLDGVRTELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALAGREA 241 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIVTDI GTTRDVL + ++G + + DTAG+R+T+D VE+ G++R + AD ILL Sbjct: 242 AIVTDIAGTTRDVLREHILIDGMPLHVVDTAGLRDTEDQVERIGVQRALSAIGEADRILL 301 Query: 305 LKEIN----SKKEISFPKNIDF-------IFIGTKSDLYSTYT-------EEYDHLISSF 346 + + + S +P+ +DF I K+DL + + + Sbjct: 302 VVDASAPEASDPSALWPEFLDFSPEPGKVTLIRNKADLTGEAIVLRCDNDGQATLSLCAR 361 Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL-------YHLSQTVRYLEMASLNEKD 399 +GEGLE L +K + + + S + +RHL HL L +A E Sbjct: 362 SGEGLELLREHLKHCMGYE-QTAESSFSARRRHLDALRLADEHLRHGHDQLTLAGAGE-- 418 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++AE+LRLA +LG+ITG + LL IFS FCIGK Sbjct: 419 ----LLAEDLRLAQQALGEITGAFSSDDLLGRIFSSFCIGK 455 >gi|310765880|gb|ADP10830.1| tRNA modification GTPase trmE [Erwinia sp. Ejp617] Length = 467 Score = 269 bits (688), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 170/461 (36%), Positives = 256/461 (55%), Gaps = 28/461 (6%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 MNH +TI A +T + I+R+SG V + + K P PR A F DG Sbjct: 14 MNH-SDTIVAQATPPGRGGVGILRVSGHKAAGVAQLLLGKL-PKPRYADFLPFRDADGST 71 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG +++ +L+ + +P LR+ANPGEFS RAF N Sbjct: 72 LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILSLPGLRIANPGEFSERAFLN 131 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + +E R ++ + G S+ ++ LTH+R ++EA +DF + Sbjct: 132 DKLDLAQAEAIADLIDASSEQAARSAVNSLQGVFSTRVNHLVEALTHLRIYVEAAIDFPD 191 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + S ++ + + + + + S+ + G ++R G K+VI G NAGKSSL NALA Sbjct: 192 EE-IDFLSDGKIEAQLHQVIDSLEAVRSEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 250 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+E AD Sbjct: 251 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWHEIEQAD 310 Query: 301 LILLL-----KEINSKKEI------SFPKNIDFIFIGTKSDLYSTYTEEYDHL------- 342 +L + + EI P+ + + K+D+ + T + + Sbjct: 311 HVLFMVDGTTTDATDPAEIWPDFIARLPETLPVTVVRNKADI-TGETRGVEKVSTNSLIR 369 Query: 343 ISSFTGEGLEELINKIKSILSNKFK-KLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKD 399 +S+ TGEG+E L + +K LS F + + +RHL L YL+ L Sbjct: 370 LSARTGEGIENLRDHLK--LSMGFSGNMEGGFLARRRHLQALELAATYLQQGKHQLLAAR 427 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G +++AE LR+A +L +ITG + LL IFS FCIGK Sbjct: 428 AG-ELLAEELRMAQQALSEITGEFSSDDLLGRIFSSFCIGK 467 >gi|320539849|ref|ZP_08039508.1| GTP-binding protein with a role in modification of tRNA [Serratia symbiotica str. Tucson] gi|320030035|gb|EFW12055.1| GTP-binding protein with a role in modification of tRNA [Serratia symbiotica str. Tucson] Length = 454 Score = 269 bits (687), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 171/457 (37%), Positives = 251/457 (54%), Gaps = 29/457 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T I I+R+SG +V K P PR A F + G LD+G+ Sbjct: 5 DTIVAQATPPGRGGIGILRISGSKAKEVA-LALLGKLPKPRYADFLPFRDVAGITLDQGI 63 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + FP+P SFTGED E HGG +++ +L+ + +P +R+A PGEFS RAF N K+DL Sbjct: 64 ALWFPAPNSFTGEDVLELQGHGGPVILDLLLKRVLALPGVRIARPGEFSERAFINDKLDL 123 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E R +M + G S+ Q ++ LTH+R ++EA +DF +EE + Sbjct: 124 AQAEAIADLIDASSEQAARSAMNSLQGAFSTRIYQLVEALTHLRIYVEAAIDFPDEE-ID 182 Query: 186 NFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 S ++ LN ++ + + QG L +R G K+VI G NAGKSSL NALA + Sbjct: 183 FLSDGKIEAQLNGVMAALDSVRGEARQGSL---LREGMKVVIAGRPNAGKSSLLNALAGR 239 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 + AIVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+E AD + Sbjct: 240 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWNEIEQADRV 299 Query: 303 LLL-----------KEINSKKEISFPKNIDFIFIGTKSDLYSTY---TEEYDH---LISS 345 L + EI + P+ + + K+D+ TE H +S+ Sbjct: 300 LFMVDGTTTVATEPAEIWQEFTARLPQRLPITVVRNKADITGETLGITEVNGHSLIRLSA 359 Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLD 403 TGEG++ L + +K + + + +RHL L Q R+L L G + Sbjct: 360 RTGEGIDLLRDHLKQSMGFT-SNMEGGFLARRRHLQALEQAARHLVQGKEQLVSAYAG-E 417 Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++AE LRLA ++L KITG + LL IFS FCIGK Sbjct: 418 LLAEELRLAQLALSKITGEFSSDDLLGRIFSSFCIGK 454 >gi|58616755|ref|YP_195954.1| tRNA modification GTPase TrmE [Ehrlichia ruminantium str. Gardel] gi|81311273|sp|Q5FF19|MNME_EHRRG RecName: Full=tRNA modification GTPase mnmE gi|58416367|emb|CAI27480.1| tRNA modification GTPase [Ehrlichia ruminantium str. Gardel] Length = 439 Score = 269 bits (687), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 172/451 (38%), Positives = 260/451 (57%), Gaps = 31/451 (6%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66 TIFA+ T S +++IR+SG + PR A+ + ++D+ ++ Sbjct: 3 TIFALCTPWGKSGVAVIRVSGQDAVKTFMHFKISNAIKPRVATFTPLYNAAHEVIDEVIV 62 Query: 67 IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126 + F +P SFTGED E H HG IAV+ IL EL K+ A PGEFS RAF N K+DL Sbjct: 63 VYFSAPNSFTGEDVVELHTHGSIAVIRMILCELGKI--FIPAGPGEFSLRAFLNNKVDLT 120 Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186 AE++ DLI++ETEMQ + ++ MSG L LY W +L + S +EA +DF EE V + Sbjct: 121 RAEAIVDLINAETEMQAKQAIRQMSGSLEKLYQSWRQQLIDVLSNMEAYIDFPEE--VTS 178 Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246 F+ + + + +K + +H++ G+ GEI+R G + ILG N+GKS+LFN LAK+D+AI Sbjct: 179 FAVENISFLLDKIKESLENHLNDGRKGEILRQGIYVAILGEPNSGKSTLFNHLAKRDIAI 238 Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD--LILL 304 V++ GTTRDVL +D+ GY + I DTAGIR+++D VE+EGI+R L+ E+AD +I+L Sbjct: 239 VSEYAGTTRDVLETHIDIAGYPIVIIDTAGIRDSNDPVEQEGIRRAKLKAESADFKIIML 298 Query: 305 LKEINSKKEISFPKNIDF-----IFIGTKSDLYSTYTEEYDHL-------ISSFTGEGLE 352 E KK+ + ID I + +KSD S T+ ++ +S G+E Sbjct: 299 PYE---KKDALNNEIIDLIDDRSICVLSKSD--SIITQNLININDINFIPVSVCCNLGIE 353 Query: 353 ELINKIKSILSNKFK---KLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENL 409 L++ I+ + FK PF +R H+ V L+ S + +++I+E+L Sbjct: 354 HLLSAIQKKVEADFKFCSTSPFITSDRQR--VHIQNAVNILKNISF---ELPMELISEDL 408 Query: 410 RLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 RL+ L K+ G + E++LD +F KFCIGK Sbjct: 409 RLSVRELEKVVGVISNEEILDNVFGKFCIGK 439 >gi|85714095|ref|ZP_01045084.1| tRNA modification GTPase [Nitrobacter sp. Nb-311A] gi|85699221|gb|EAQ37089.1| tRNA modification GTPase [Nitrobacter sp. Nb-311A] Length = 456 Score = 269 bits (687), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 166/460 (36%), Positives = 251/460 (54%), Gaps = 24/460 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+ ++TIFA+S+G PSAI+++R+SGP + P R A G Sbjct: 1 MHPREQTIFALSSGRPPSAIAVVRVSGPQAGAALRELAGAI-PVARMARRVLLRDRIGEA 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D +++ FP+P S TGED AEFH+HGG AV+N + L+ + N R A PGEF+RRAFEN Sbjct: 60 IDDAVVLWFPAPASATGEDVAEFHIHGGRAVLNALFAALSSIDNTRAAEPGEFTRRAFEN 119 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GKIDL EAE L DLI ++T+ QRR ++ + G L W +L + IEA +DF + Sbjct: 120 GKIDLTEAEGLDDLIHADTDRQRRQALRQLQGLLGDRARGWRKELIEASALIEAGIDFVD 179 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E DV K + I L+ +I ++ E +R+G I I G NAGKS+L N L Sbjct: 180 EGDVPEDLLKPAMEKIAQLRREIEQTLAAPAQSERLRDGLMIAITGPPNAGKSTLLNRLV 239 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 +++ AIV+ GTTRD++ LDL+GY V + DTAGIRETDD VE+EG++R +AD Sbjct: 240 RREAAIVSPHAGTTRDIIEAYLDLDGYPVTLIDTAGIRETDDPVEQEGMRRARDRAASAD 299 Query: 301 LILLLKE-------------------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH 341 L+L L + + +K ++S P+N D + + + Sbjct: 300 LVLWLSDGEMADLDPTIRVGDCSLWLVRNKIDLSGPEN-DEANPRQRETTTARGSRVRRF 358 Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDC 400 +S+ G+GL++L+ + ++ + + R L L A +L + Sbjct: 359 RVSARRGDGLDDLVAALTVFAGDRLGSSEAGVITRLRQRNILRDAAGSLARAEALAGR-- 416 Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G ++IAE LR+A +G++ G VD++ +LD +F +FCIGK Sbjct: 417 GDELIAEELRIAIHLMGRLLGRVDIDDILDSLFKEFCIGK 456 >gi|24371603|ref|NP_715645.1| tRNA modification GTPase TrmE [Shewanella oneidensis MR-1] gi|24345353|gb|AAN53090.1|AE015452_3 tRNA modification GTPase TrmE [Shewanella oneidensis MR-1] Length = 457 Score = 269 bits (687), Expect = 9e-70, Method: Compositional matrix adjust. Identities = 165/453 (36%), Positives = 256/453 (56%), Gaps = 21/453 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + IIR+SG V + P PR A YF G+++D+G+ Sbjct: 8 DTIVAQATAPGRGGVGIIRISGDKATNVAMAVLGHL-PKPRYADYCYFKSASGQVIDQGI 66 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + F P SFTGED E HGG V++ +++ + ++ +R+A PGEFS +AF N K+DL Sbjct: 67 ALFFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVLEVEGIRIAKPGEFSEQAFMNDKLDL 126 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E + +++ + GE S + +D++TH+R ++EA +DF +EE V Sbjct: 127 TQAEAIADLIDATSEQAAKSALQSLQGEFSKEVHELVDQVTHLRLYVEAAIDFPDEE-VD 185 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S ++ N + + + + + + K G IIR G K+VI G NAGKSSL NALA K+ A Sbjct: 186 FLSDGKIANALYKIIDKLIAVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKESA 245 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVT+I GTTRDVL + L+G + I DTAG+R+T D VE+ GI+R + E+ +AD +L + Sbjct: 246 IVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTTDTVEQIGIERAWNEINSADRVLFM 305 Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYS---TYTEEYD---HLISSFTG 348 + + + P N+ I K+DL TEE + IS+ TG Sbjct: 306 VDGTTTTAVDPHDIWPDFINRLPTNLGVTVIRNKADLTGENLEMTEEKGYSVYRISAKTG 365 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407 G++EL +KS++ + L + +RHL L +L++ E +++AE Sbjct: 366 LGVDELKQHLKSLMGYQ-SNLEGGFIARRRHLEALEIAASHLQLGKEQLEVYLAGELLAE 424 Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LR+A ++L +ITG + LL IFS FCIGK Sbjct: 425 ELRMAQLALSEITGRFTSDDLLGKIFSSFCIGK 457 >gi|71909809|ref|YP_287396.1| tRNA modification GTPase TrmE [Dechloromonas aromatica RCB] gi|123626188|sp|Q477Q5|MNME_DECAR RecName: Full=tRNA modification GTPase mnmE gi|71849430|gb|AAZ48926.1| tRNA modification GTPase trmE [Dechloromonas aromatica RCB] Length = 448 Score = 268 bits (686), Expect = 9e-70, Method: Compositional matrix adjust. Identities = 172/450 (38%), Positives = 250/450 (55%), Gaps = 20/450 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A++T + +IR+SG + F +K P PR ASL F DG +D GL Sbjct: 4 DTIAAIATAPGRGGVGVIRISGSNLLPFA-FALTEKTPKPRYASLADFKAADGSTIDTGL 62 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 L+ FP+P+SFTGED E HGG V+ +L + RLA PGEFSRRAF NGK+DL Sbjct: 63 LLYFPNPQSFTGEDVLELQGHGGPVVMQMLLARCLDL-GARLAEPGEFSRRAFLNGKMDL 121 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + T R ++ + GE S G+ D+L ++R +EA LDF EE D+ Sbjct: 122 AQAEAVADLIDAATASAARSAVRSLQGEFSRAIGELNDELINLRMLVEATLDFPEE-DID 180 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 + + L+ ++ + G+++++G +V+ G N GKSSL N LA D+A Sbjct: 181 FLKAANAFGRLERLQLKLAEIFDRAGQGKLLQSGLHVVLAGQPNVGKSSLLNRLAGDDLA 240 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVT I GTTRD L + +EG + I DTAG+RETDD VEK GI+R++ E+E +D++LLL Sbjct: 241 IVTPIAGTTRDALRSTIQIEGIPLHIIDTAGLRETDDEVEKIGIERSWKEIERSDVVLLL 300 Query: 306 KEIN-----SKKEI--SFPKNIDFIFIGTKSDLYSTYTEEYDHL------ISSFTGEGLE 352 + S +EI P + I + K DL E +D +S+ +G+E Sbjct: 301 VDARTGVSESDREILARLPDRLQRITVYNKIDLTHRAAERHDEANGTAISLSAKANQGIE 360 Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LNEKDCGLDIIAENLR 410 L ++ I + + + +RHL LS ++ A + L++ AE LR Sbjct: 361 LLRQELLRIAG--WHQAEDVFIARERHLRALSAAQEHVAAARNVVEGALPALELFAEELR 418 Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LA SLG+ITG + LL +IFS+FCIGK Sbjct: 419 LAQQSLGEITGEFTADDLLGVIFSRFCIGK 448 >gi|259910299|ref|YP_002650655.1| tRNA modification GTPase TrmE [Erwinia pyrifoliae Ep1/96] gi|224965921|emb|CAX57454.1| tRNA modification GTPase [Erwinia pyrifoliae Ep1/96] Length = 454 Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 169/460 (36%), Positives = 254/460 (55%), Gaps = 26/460 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 MNH +TI A +T + I+R+SG V + + K P PR A F DG Sbjct: 1 MNH-SDTIVAQATPPGRGGVGILRVSGHKAAGVAQLLLGKL-PKPRYADYLPFRDADGST 58 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG +++ +L+ + +P LR+ANPGEFS RAF N Sbjct: 59 LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILSLPGLRIANPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + +E R ++ + G S+ + ++ LTH+R ++EA +DF + Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSAVNSLQGVFSTRVNRLVEALTHLRIYVEAAIDFPD 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + S ++ + + + + + S+ + G ++R G K+VI G NAGKSSL NALA Sbjct: 179 EE-IDFLSDGKIEAQLHQVIDSLDAVRSEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+E AD Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWHEIEQAD 297 Query: 301 LILLL-----KEINSKKEI------SFPKNIDFIFIGTKSDLYS------TYTEEYDHLI 343 +L + + EI P+ + + K+D+ + + Sbjct: 298 HVLFMVDGTTTDATDPAEIWPDFIARLPETLPVTVVRNKADITGEIKGVEKVSAHSLIRL 357 Query: 344 SSFTGEGLEELINKIKSILSNKFK-KLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDC 400 S+ TGEG+E L + +K LS F + + +RHL L YL+ L Sbjct: 358 SARTGEGIENLRDHLK--LSMGFSGNMEGGFLARRRHLQALELAATYLQQGKHQLLAARA 415 Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G +++AE LR+A +L +ITG + LL IFS FCIGK Sbjct: 416 G-ELLAEELRMAQQALSEITGEFSSDDLLGRIFSSFCIGK 454 >gi|283480423|emb|CAY76339.1| tRNA modification GTPase trmE [Erwinia pyrifoliae DSM 12163] Length = 467 Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 169/460 (36%), Positives = 254/460 (55%), Gaps = 26/460 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 MNH +TI A +T + I+R+SG V + + K P PR A F DG Sbjct: 14 MNH-SDTIVAQATPPGRGGVGILRVSGHKAAGVAQLLLGKL-PKPRYADYLPFRDADGST 71 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG +++ +L+ + +P LR+ANPGEFS RAF N Sbjct: 72 LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILSLPGLRIANPGEFSERAFLN 131 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + +E R ++ + G S+ + ++ LTH+R ++EA +DF + Sbjct: 132 DKLDLAQAEAIADLIDASSEQAARSAVNSLQGVFSTRVNRLVEALTHLRIYVEAAIDFPD 191 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + S ++ + + + + + S+ + G ++R G K+VI G NAGKSSL NALA Sbjct: 192 EE-IDFLSDGKIEAQLHQVIDSLDAVRSEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 250 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+E AD Sbjct: 251 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWHEIEQAD 310 Query: 301 LILLL-----KEINSKKEI------SFPKNIDFIFIGTKSDLYS------TYTEEYDHLI 343 +L + + EI P+ + + K+D+ + + Sbjct: 311 HVLFMVDGTTTDATDPAEIWPDFIARLPETLPVTVVRNKADITGEIKGVEKVSAHSLIRL 370 Query: 344 SSFTGEGLEELINKIKSILSNKFK-KLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDC 400 S+ TGEG+E L + +K LS F + + +RHL L YL+ L Sbjct: 371 SARTGEGIENLRDHLK--LSMGFSGNMEGGFLARRRHLQALELAATYLQQGKHQLLAARA 428 Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G +++AE LR+A +L +ITG + LL IFS FCIGK Sbjct: 429 G-ELLAEELRMAQQALSEITGEFSSDDLLGRIFSSFCIGK 467 >gi|205371772|sp|Q8CX52|MNME_SHEON RecName: Full=tRNA modification GTPase mnmE Length = 453 Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 165/453 (36%), Positives = 256/453 (56%), Gaps = 21/453 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + IIR+SG V + P PR A YF G+++D+G+ Sbjct: 4 DTIVAQATAPGRGGVGIIRISGDKATNVAMAVLGHL-PKPRYADYCYFKSASGQVIDQGI 62 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + F P SFTGED E HGG V++ +++ + ++ +R+A PGEFS +AF N K+DL Sbjct: 63 ALFFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVLEVEGIRIAKPGEFSEQAFMNDKLDL 122 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E + +++ + GE S + +D++TH+R ++EA +DF +EE V Sbjct: 123 TQAEAIADLIDATSEQAAKSALQSLQGEFSKEVHELVDQVTHLRLYVEAAIDFPDEE-VD 181 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S ++ N + + + + + + K G IIR G K+VI G NAGKSSL NALA K+ A Sbjct: 182 FLSDGKIANALYKIIDKLIAVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKESA 241 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVT+I GTTRDVL + L+G + I DTAG+R+T D VE+ GI+R + E+ +AD +L + Sbjct: 242 IVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTTDTVEQIGIERAWNEINSADRVLFM 301 Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYS---TYTEEYD---HLISSFTG 348 + + + P N+ I K+DL TEE + IS+ TG Sbjct: 302 VDGTTTTAVDPHDIWPDFINRLPTNLGVTVIRNKADLTGENLEMTEEKGYSVYRISAKTG 361 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407 G++EL +KS++ + L + +RHL L +L++ E +++AE Sbjct: 362 LGVDELKQHLKSLMGYQ-SNLEGGFIARRRHLEALEIAASHLQLGKEQLEVYLAGELLAE 420 Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LR+A ++L +ITG + LL IFS FCIGK Sbjct: 421 ELRMAQLALSEITGRFTSDDLLGKIFSSFCIGK 453 >gi|293602680|ref|ZP_06685121.1| tRNA modification GTPase TrmE [Achromobacter piechaudii ATCC 43553] gi|292818871|gb|EFF77911.1| tRNA modification GTPase TrmE [Achromobacter piechaudii ATCC 43553] Length = 450 Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 170/438 (38%), Positives = 247/438 (56%), Gaps = 23/438 (5%) Query: 20 ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGED 79 I ++R+SG ++ + ++ PR A F DG +LD+G+ I F +P S+TGED Sbjct: 19 IGVVRVSGADLSELVRRLFQRDLT-PRHAHYLPFKTSDGELLDEGIAIYFRAPHSYTGED 77 Query: 80 SAEFHVHGGIAVVNGILEELAKMP---NLRLANPGEFSRRAFENGKIDLLEAESLADLIS 136 E HGG AV+ +LE +RLA PGEF+RRAF N ++DL +AE++ADLI Sbjct: 78 VLELQGHGGPAVLRRVLESCVAAGRDLGVRLAEPGEFTRRAFLNDRMDLAQAEAVADLID 137 Query: 137 SETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED--VQNFSSKEVLN 194 + + R +M +SGE S+ + D++ H+R +EA LDF EEE ++ + ++ L+ Sbjct: 138 ASSVAAARGAMASLSGEFSARVNELSDRIIHLRMLVEATLDFPEEEIDFLEKYQARPTLD 197 Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254 L D+S I+Q + G I+R G +V+ G N GKSSL NALA D+AIVT I GTT Sbjct: 198 ---ALTADLSKLIAQARQGVILREGLHVVLAGQPNVGKSSLLNALAGDDIAIVTPIAGTT 254 Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK-------E 307 RD + ++ ++G + I DTAG+RET+D VE GI RT+ E+E AD+IL L+ E Sbjct: 255 RDKVVQEIHIDGVPLHIVDTAGLRETEDTVESIGIARTWQEIERADVILHLQDATQPGDE 314 Query: 308 INSKKEISFPKNIDFIFIGTKSDLYST--YTEEYDHLISSFTGEGLEELINKIKSILS-N 364 ++++ P + + K DL ST E + IS+ G GL+ L + I N Sbjct: 315 LDAQITARLPPRTPVLKVFNKVDLLSTAFAPGEGELGISAKRGAGLDALRAALLHIAGWN 374 Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LNEKDCGLDIIAENLRLASVSLGKITGC 422 + P+ + +RHL+ L Q +L +A + D LD+ AE LRLA SL ITG Sbjct: 375 PGAESPWL--ARERHLHALQQAAEHLALAGEHAGQDDRVLDLFAEELRLAHESLSSITGK 432 Query: 423 VDVEQLLDIIFSKFCIGK 440 + LL IFS FCIGK Sbjct: 433 FTSDDLLGEIFSSFCIGK 450 >gi|294638333|ref|ZP_06716586.1| tRNA modification GTPase TrmE [Edwardsiella tarda ATCC 23685] gi|291088586|gb|EFE21147.1| tRNA modification GTPase TrmE [Edwardsiella tarda ATCC 23685] Length = 455 Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 169/460 (36%), Positives = 254/460 (55%), Gaps = 35/460 (7%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + I+R+SGP V + + K P PR A F DG +LD+G+ Sbjct: 6 DTIVAQATAPGRGGVGILRVSGPQAQAVAQALLGKL-PKPRYADYLPFRDQDGTLLDQGI 64 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + FP P SFTGED E HGG +++ +L+ + ++P LR+A PGEFS RAF N K+DL Sbjct: 65 ALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILQLPGLRIARPGEFSERAFLNDKMDL 124 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E R ++ + G S+ Q ++ LTH+R ++EA +DF +EE + Sbjct: 125 AQAEAIADLIDASSEQAARSAVNSLQGVFSARVNQLVESLTHLRIYVEAAIDFPDEE-ID 183 Query: 186 NFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 S ++ LN ++ D+ + QG L +R G K+VI G NAGKSSL NALA + Sbjct: 184 FLSDGKIEAQLNAVMHELADVRAEARQGSL---LREGMKVVIAGRPNAGKSSLLNALAGR 240 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 + AIVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+E AD + Sbjct: 241 EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRV 300 Query: 303 LLLKE-----------INSKKEISFPKNIDFIFIGTKSDLYS---TYTEEYDHL---ISS 345 L + + I P ++ + K+D+ + + H +S+ Sbjct: 301 LFMVDGTTTDATDPATIWPDFIARLPASLPITVVRNKADVTGEPLGISTSHGHTLVRLSA 360 Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL--- 402 TG G++ L + +K + + L + +RHL L Q +L+ KD L Sbjct: 361 RTGAGIDVLRDHLKQSMGFE-THLEGGFLARRRHLQALEQAAIHLQQG----KDQLLGAM 415 Query: 403 --DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LRLA SL +ITG + LL IF+ FCIGK Sbjct: 416 AGELLAEELRLAQQSLSEITGEFTSDDLLGRIFTSFCIGK 455 >gi|270158409|ref|ZP_06187066.1| tRNA modification GTPase TrmE [Legionella longbeachae D-4968] gi|289166752|ref|YP_003456890.1| GTPase [Legionella longbeachae NSW150] gi|269990434|gb|EEZ96688.1| tRNA modification GTPase TrmE [Legionella longbeachae D-4968] gi|288859925|emb|CBJ13911.1| GTPase [Legionella longbeachae NSW150] Length = 452 Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 171/454 (37%), Positives = 256/454 (56%), Gaps = 24/454 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR------ 59 ETI AV+T + I+RLSGP + + + K PR A+ F+ Sbjct: 4 ETIVAVATPPGRGGVGILRLSGPQAYSIAISLNGNKTLQPRLATFCSFYSCSHSNEEEIS 63 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 ++D+G++I F P SFTGED E HG V++ + +E + RLA PGEFS RAF Sbjct: 64 VVDQGIMIYFKQPHSFTGEDVVEIQAHGSPVVLDMLTKECVHL-GARLARPGEFSERAFL 122 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 N KIDL +AE++ADLI + ++ R++ + + GE SS Q +++ H+R ++EA +DF Sbjct: 123 NDKIDLTQAEAIADLIQASSQTAARMAFKSLQGEFSSKIAQLNEQIIHLRLYVEAAIDFP 182 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 EEE + + +V + L + + + SQ G I+R G +VI G NAGKS+L N L Sbjct: 183 EEE-IDFLNDGKVAQLLQNLLDKLDAIRSQANQGVILREGLSVVIAGRPNAGKSTLINCL 241 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 A +DVAIVT+I GTTRDV+ + L+ + I DTAG+R++DDIVEKEGIKR + E++ A Sbjct: 242 AGRDVAIVTEIAGTTRDVMREHILLDDIPLHIIDTAGLRDSDDIVEKEGIKRAWEELKKA 301 Query: 300 DLILLLKEINS-------KKEI--SFPKNIDFIFIGTKSDLY--STYTEEYDHLISSFTG 348 D +LL+ +IN +EI S P + I + K D S E + + + +G Sbjct: 302 DCVLLVVDINDLELHHDLSQEIRTSLPAEVPIITLFNKIDTLGRSAQVENHSVYLCAKSG 361 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT--VRYLEMASLNEKDCGLDIIA 406 EG++ L IK ++ + + F + +RHL L + + + L E G +++A Sbjct: 362 EGVDALKQLIKQVVGYQPNEGQFL--ARRRHLRALDEAKDILLVGQQQLAEHRAG-ELLA 418 Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E+LRLA +L +ITG + LL IFS FCIGK Sbjct: 419 EDLRLAHQTLCEITGEFSSDDLLGRIFSSFCIGK 452 >gi|77464808|ref|YP_354312.1| tRNA modification GTPase TrmE [Rhodobacter sphaeroides 2.4.1] gi|123590764|sp|Q3IYH3|MNME_RHOS4 RecName: Full=tRNA modification GTPase mnmE gi|77389226|gb|ABA80411.1| tRNA modification GTPase trmE [Rhodobacter sphaeroides 2.4.1] Length = 428 Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 164/440 (37%), Positives = 249/440 (56%), Gaps = 18/440 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP--RKASLRYFFGLDGRILDK 63 +TI+A+++ + ++++RLSGP + + P P R A+LR +G +LD+ Sbjct: 2 DTIYALASARGKAGVAVLRLSGPRSHEAVQAFGV---PLPSLRHAALRRLT-WNGEVLDE 57 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 L+++F + SFTGE SAE H+HG A V+ +L L+ +P LR A GEF+RRA ENG++ Sbjct: 58 ALVLLFGAGASFTGETSAELHLHGSPAAVSSVLRVLSGLPGLRAAEAGEFTRRALENGRL 117 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL + E LADLI +ETE QRR +M SG + +W L + +EA +DF+ +ED Sbjct: 118 DLAQVEGLADLIDAETEAQRRQAMRVFSGAIGERAERWRADLIRAAALLEATIDFA-DED 176 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 V + EVL I L D+ + ++ E IR+G+++ I+G NAGKS+L NALA+++ Sbjct: 177 VPVDVTPEVLTLIDGLLADLRREVDGSRIAERIRDGFEVAIVGAPNAGKSTLLNALARRE 236 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL-I 302 AI ++I GTTRDV+ + +DL+G V DTAG+R+T D+VE GI+R + ADL + Sbjct: 237 AAITSEIAGTTRDVIEVRMDLDGLPVTFLDTAGLRDTSDLVESLGIERAVTRAKAADLRV 296 Query: 303 LLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362 LL + I+ D + + K+DL +S TGEG+ EL+ I L Sbjct: 297 FLLDDSGPLSGITV--QADDLVVQGKADLRPGQGLR----LSGRTGEGVPELVAAIGERL 350 Query: 363 SNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDIIAENLRLASVSLGKIT 420 + + +RH + + + +E A L ++ A++LR A SL + Sbjct: 351 LGRTAG--AGSLTRERHRLAIERAIGAMESVRAELLRGQQHTELAADDLRRAIRSLDSLV 408 Query: 421 GCVDVEQLLDIIFSKFCIGK 440 G VDVE LL IF+ FCIGK Sbjct: 409 GRVDVESLLGEIFASFCIGK 428 >gi|238899053|ref|YP_002924735.1| GTPase involved in tRNA modification and in thiophene and furan oxidation [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|259495842|sp|C4K7P4|MNME_HAMD5 RecName: Full=tRNA modification GTPase mnmE gi|229466813|gb|ACQ68587.1| GTPase involved in tRNA modification and in thiophene and furan oxidation [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 458 Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 176/462 (38%), Positives = 260/462 (56%), Gaps = 26/462 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+H +TI A +T I I+R+SG + V + I K P R A F +G I Sbjct: 1 MSH-TDTIVAQATPIGRGGIGILRISGCATKTVAKEILGKL-PRARYAEYLAFKDPEGNI 58 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNL--RLANPGEFSRRAF 118 LD+G+ + FP+P SFTGED E HGG +++ +L+ + +P++ R+A PGEFS RAF Sbjct: 59 LDQGIALYFPAPHSFTGEDVLELQGHGGPIILDLLLKAILNLPDVCVRIARPGEFSERAF 118 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 N K+DL++AE++ADLI + TE R ++ + G S Q I+ LT++R +IEA +DF Sbjct: 119 LNDKLDLVQAEAVADLIDASTEQAARCALHSLKGTFSLRINQLIESLTYLRVYIEASMDF 178 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 S+EE + S ++ + + +D+ S+ + G+++R G KIVI G N GKSSL NA Sbjct: 179 SDEE-IDFLSDGKIETQLDRVIHDLDKVRSEARQGQLLREGMKIVIAGRPNVGKSSLLNA 237 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L ++ AIVT IPGTTRDVL + + G + I DTAG+RET+D VEK GI+R + E+E Sbjct: 238 LTGRETAIVTQIPGTTRDVLREQIQINGMPLHIIDTAGLRETEDPVEKIGIERAWNEIEQ 297 Query: 299 ADLILLLKEINSKKEIS----FPK--------NIDFIFIGTKSDLYS-----TYTEEYDH 341 AD IL + + ++ E + +P+ + I KSD+ T TEE Sbjct: 298 ADRILFIVDGSTSSEKTIYPLWPEWEARLSRSRLPITLIRNKSDITGEDVALTETEEGTF 357 Query: 342 L-ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC 400 + +S+ TGEG++ L ++ + + + +RHL L +YL A Sbjct: 358 ISLSARTGEGIDLLREHLQQTMGFS-GNMEGGFLARRRHLEALENAAQYLLSARQKWSSG 416 Query: 401 GL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LRLA L +ITG V LL IIFS FCIGK Sbjct: 417 NFLSELLAEELRLAQQVLSEITGQVSSNDLLGIIFSSFCIGK 458 >gi|77166532|ref|YP_345057.1| tRNA modification GTPase TrmE [Nitrosococcus oceani ATCC 19707] gi|123593187|sp|Q3J6L9|MNME_NITOC RecName: Full=tRNA modification GTPase mnmE gi|76884846|gb|ABA59527.1| tRNA modification GTPase trmE [Nitrosococcus oceani ATCC 19707] Length = 458 Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 164/450 (36%), Positives = 260/450 (57%), Gaps = 20/450 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A++T ++ I+R+SGP C Q+ E + + P PR A+ +F G ILD+GL Sbjct: 14 DTIAAIATPPGQGSVGIVRVSGPFCRQIAEQVTGRVPP-PRYATFCHFRNRYGEILDQGL 72 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 ++ FP P SFTGED E HGG A+++ +L + ++ +RLA PGEFS RAF N KIDL Sbjct: 73 ILYFPGPHSFTGEDVLELQGHGGPAIMDWLLSSVLQL-GVRLARPGEFSERAFLNNKIDL 131 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI S +E R ++ + GE S+ ++LT +R +EA++DFS+E D+ Sbjct: 132 AQAEAIADLIESASEQAARSALRSLHGEFSAQIQTLREQLTELRCVVEANIDFSDE-DID 190 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 V + +++ + S + G ++R G ++V+ G N GKSSL N LA + A Sbjct: 191 FIERGMVAERLKEIQSTLQSIHRSARQGALLREGVRVVLAGRPNVGKSSLHNRLAGFEAA 250 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTD+PGTTRD+L ++ ++G + +SDTAG+ + D +E+EG++RT E+ +AD +LL+ Sbjct: 251 IVTDVPGTTRDLLRENITIDGLPIHLSDTAGLHNSKDTIEQEGMRRTREELIHADHVLLV 310 Query: 306 KEINS-----KKEI--SFPKNIDFIFIGTKSDLYSTYTEEYDHL------ISSFTGEGLE 352 + S ++ I P ++ + I K DL ++ L +S+ TG G++ Sbjct: 311 ADDQSGLTEAEQAILDELPDDVTYTLIFNKIDLSGAPAGRWEELQGIALRLSALTGAGMD 370 Query: 353 ELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL-DIIAENLR 410 L ++K ++ + FS + +RHL L + + +A D G +I+AE LR Sbjct: 371 LLCQRLKECAGFDRESEGCFS--ARRRHLEALQRAGAAVVVARKILGDKGAEEILAEELR 428 Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A +L +ITG + LL IFS FCIGK Sbjct: 429 QAQNALAEITGEYRSDDLLGEIFSTFCIGK 458 >gi|238787834|ref|ZP_04631631.1| tRNA modification GTPase mnmE [Yersinia frederiksenii ATCC 33641] gi|238724177|gb|EEQ15820.1| tRNA modification GTPase mnmE [Yersinia frederiksenii ATCC 33641] Length = 454 Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 166/454 (36%), Positives = 249/454 (54%), Gaps = 23/454 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + I+R+SG + V + + K P PR A F +DG ILD+G+ Sbjct: 5 DTIVAQATPPGRGGVGILRVSGRAAATVAQAVLGKL-PKPRYADYLPFKDVDGSILDQGI 63 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + FP P SFTGED E HGG +++ +L+ + +P LR+A PGEFS RAF N K+DL Sbjct: 64 ALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILALPGLRIARPGEFSERAFLNDKLDL 123 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E R ++ + G S Q ++ LTH+R ++EA +DF +EE + Sbjct: 124 AQAEAIADLIDASSEQAARSAVNSLQGAFSVRIHQLVEALTHLRIYVEAAIDFPDEE-ID 182 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S ++ + + D+ ++ + G ++R G K+VI G NAGKSSL NALA ++ A Sbjct: 183 FLSDGKIEGQLNGVMADLEQVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAA 242 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+E AD +L + Sbjct: 243 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWHEIEQADRVLFM 302 Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDH---LISSFTG 348 + + P ++ + K+D+ TE H +S+ TG Sbjct: 303 VDGTTTDATEPSAIWPEFMARLPSSLPITVVRNKADITGETLGLTEVNGHSLIRLSARTG 362 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIA 406 EG++ L N +K + + +RHL L ++L L G +++A Sbjct: 363 EGIDLLRNHLKQSMGFT-SNTEGGFLARRRHLQALETAAQHLVQGHEQLVSAHAG-ELLA 420 Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E LRLA SL +ITG + LL IFS FCIGK Sbjct: 421 EELRLAQQSLSEITGEFSSDDLLGRIFSSFCIGK 454 >gi|319796642|ref|YP_004158282.1| tRNA modification GTPase trme [Variovorax paradoxus EPS] gi|315599105|gb|ADU40171.1| tRNA modification GTPase TrmE [Variovorax paradoxus EPS] Length = 469 Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 163/466 (34%), Positives = 252/466 (54%), Gaps = 35/466 (7%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 + I A++T + A+ I+R+SG + E IC + PR+A+ F D +D GL Sbjct: 8 DPIVAIATASGRGAVGIVRVSGARLAPLIEAICGRALK-PREATYLPFRDADDEPVDHGL 66 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEEL-------------AKMPNLRLANPGE 112 I FPSP SFTGED E HGG V+ +L ++P LR+A PGE Sbjct: 67 AIHFPSPNSFTGEDVLELQAHGGTVVLQLLLARCLEAAAEADPVTGRPRLPGLRVAEPGE 126 Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172 FS+RAF NGKIDL +AE++ADLI + TE R + +SG S D L H+R + Sbjct: 127 FSQRAFLNGKIDLAQAEAIADLIDASTEAAARSAGRSLSGAFSREIHTLRDALIHLRMLV 186 Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232 EA LDF EEE + + + L+ +++ + K G ++R G K+VI G NAGK Sbjct: 187 EATLDFPEEE-IDFLQKADATGQLARLQTQLAAVQQRAKQGALLREGIKVVIAGQPNAGK 245 Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292 SSL NALA ++AIV+ + GTTRDV++ + + G + ++DTAG+RE+ D VE+ G+ R Sbjct: 246 SSLLNALAGAELAIVSAVAGTTRDVVSQTIQIHGVPLHVADTAGLRESSDEVEQIGVARA 305 Query: 293 FLEVENADLILLLKEINSKKEISF---------------PKNIDFIFIGTKSDLYSTYTE 337 + ++E+AD +L L ++ + + P ++ + + K D T Sbjct: 306 WGQIESADAVLFLHDLTRAAQPDYAAADAEILRGLQGKLPASVPVLDVWNKQDAAPTAAP 365 Query: 338 EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP-SHKRHLYHLS--QTVRYLEMAS 394 +S+ TG G+E L +++ ++ ++ +P + + RH+ L +T L + Sbjct: 366 ARGIALSAKTGLGIEALRDQLLAMAG--WQSVPEGVYLARARHVQALGKVETHLALAASH 423 Query: 395 LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L + LD++AE LRLA +L +ITG + LL +IFS+FCIGK Sbjct: 424 LAAQAQLLDLLAEELRLAQNALNEITGEFGADDLLGVIFSRFCIGK 469 >gi|260912765|ref|ZP_05919251.1| tRNA modification GTPase TrmE [Pasteurella dagmatis ATCC 43325] gi|260633143|gb|EEX51308.1| tRNA modification GTPase TrmE [Pasteurella dagmatis ATCC 43325] Length = 476 Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 171/464 (36%), Positives = 255/464 (54%), Gaps = 41/464 (8%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64 KETI A +T I I+R+SGP +V + K P PR A F LDG +LD+G Sbjct: 26 KETIVAQATAPGRGGIGILRVSGPKAVEVANTVLGKC-PKPRMADYLPFKDLDGTVLDQG 84 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 + + F +P SFTGED E HGG V++ +L+ + ++ +RLA PGEFS +AF N K+D Sbjct: 85 IALYFKAPNSFTGEDVLELQGHGGQVVLDLLLKRILQIDGIRLARPGEFSEQAFLNDKLD 144 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ADLI + +E R +++ + GE S+ Q +D + ++R+++EA +DF +EE + Sbjct: 145 LAQAEAIADLIDASSEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEAAIDFPDEE-I 203 Query: 185 QNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 + ++ LNDI+ N + S QG I+R G K+VI G NAGKSSL NALA Sbjct: 204 DFLADGKIEAHLNDIIEQLNKVRSEAKQGS---ILREGMKVVIAGRPNAGKSSLLNALAG 260 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 ++ AIVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI R + E+E AD Sbjct: 261 REAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREATDEVERIGIVRAWSEIEQADR 320 Query: 302 ILLLKEINSKKE-----------ISFPKNIDFIFIGTKSDL------------YSTYTEE 338 ILL+ + + P I + K+DL Y+ T Sbjct: 321 ILLMLDSTEQDNQNLDNVWPEFLAKLPSQIPVTIVRNKADLSGEAEGIQENSGYTIVT-- 378 Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLN 396 +S+ T +G+E L +K + + + + +RHL L + +L++ L Sbjct: 379 ----LSAKTQQGVELLREHLKQSMGYQ-TNMEGGFLARRRHLDALEKAAEHLQLGHVQLT 433 Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + G +++AE LR+ L +ITG + LL IFS FCIGK Sbjct: 434 QFYAG-ELLAEELRMVQEHLSEITGQFTSDDLLGNIFSSFCIGK 476 >gi|145637307|ref|ZP_01792968.1| tRNA modification GTPase [Haemophilus influenzae PittHH] gi|145269559|gb|EDK09501.1| tRNA modification GTPase [Haemophilus influenzae PittHH] Length = 452 Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 168/455 (36%), Positives = 253/455 (55%), Gaps = 23/455 (5%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64 KETI A +T I I+R+SGP +V + I K P PR A F DG ILD+G Sbjct: 2 KETIVAQATAPGRGGIGILRVSGPLATKVAQAILGKC-PKPRMADYLPFKDADGTILDQG 60 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 + + F SP SFTGED E HGG V++ +L+ + K+ +RLA PGEFS +AF N K+D Sbjct: 61 IALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILKIDGIRLARPGEFSEQAFLNDKLD 120 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ADLI + +E R +++ + GE S + +D + ++R+++EA +DF +EE + Sbjct: 121 LAQAEAIADLIDATSEQAVRSALKSLQGEFSKKVNELVDSVIYLRTYVEASIDFPDEE-I 179 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + ++ ++ + N + S+ K G I+R G K+VI G NAGKSSL NALA ++ Sbjct: 180 DFLADGKIEANLRGIINQLEDVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREA 239 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIVTDI GTTRDVL + ++G + I DTAG+R+ D VE+ GI R + E+E AD I+L Sbjct: 240 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDATDEVERIGISRAWTEIEQADRIIL 299 Query: 305 -----------LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347 L ++ S+ P + + K DL E + +S+ T Sbjct: 300 MLDSSDPESVDLSKVRSEFLAKLPSTLPVTMVRNKIDLNGEQASESEQGGYQIISLSAQT 359 Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDII 405 +G++ L +K + + + + +RHL L + +L+ + L E G +++ Sbjct: 360 HDGVKLLREHLKQAMGFQ-TGMEGGFLARRRHLDALDKAAEHLQIGLVQLTEFHAG-ELL 417 Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 AE LRL L +ITG + LL IFS FCIGK Sbjct: 418 AEELRLVQSYLSEITGQFTSDDLLGNIFSSFCIGK 452 >gi|313669190|ref|YP_004049474.1| thiophene and furan oxidation protein [Neisseria lactamica ST-640] gi|313006652|emb|CBN88118.1| probable thiophene and furan oxidation protein [Neisseria lactamica 020-06] Length = 448 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 167/456 (36%), Positives = 256/456 (56%), Gaps = 24/456 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+ TI AV+T + +IR+SG + + E +C K P PR A+ F DG+ Sbjct: 1 MSDNVPTIAAVATAPGRGGVGVIRISGKNLLPMAEALCGKT-PKPRVATYADFTDADGQA 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D GLL+ F +P SFTGED E HGG V++ +L ++ RLA PGEF++RAF N Sbjct: 60 IDSGLLLFFAAPASFTGEDVIELQGHGGPVVMDMLLNRCLEL-GARLAEPGEFTKRAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE +ADLI + + RL++ + G+ S ++ L +R +EA LDF E Sbjct: 119 DKLDLAQAEGVADLIDASSRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEATLDFPE 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E D+ + + + L+ + ++ + G I+R G +V++G N GKSSL NALA Sbjct: 179 E-DIDFLEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 +VAIVTDI GTTRD + + ++G V I DTAG+RETDD+VE+ GI+R+ V AD Sbjct: 238 GDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEAD 297 Query: 301 LILLLKE----INSKKEI---SFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347 + L+L + +N K + + P + I I +KSDL++ + +S+ T Sbjct: 298 VALVLVDPREGLNEKTRMILDALPPELKRIEIHSKSDLHAHAAGGFGTGAETVIALSAKT 357 Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG---LDI 404 G+GL+ L + + + + + RH+ L L +A+L CG +++ Sbjct: 358 GDGLDALKRMLLREAGWQGESEGLFL-ARTRHVNALKAAQEELSLAAL----CGNHQIEL 412 Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +AE+LRLA V+ G+ITG + LL +IFS+FCIGK Sbjct: 413 LAEHLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448 >gi|68249586|ref|YP_248698.1| tRNA modification GTPase TrmE [Haemophilus influenzae 86-028NP] gi|81335985|sp|Q4QLQ9|MNME_HAEI8 RecName: Full=tRNA modification GTPase mnmE gi|68057785|gb|AAX88038.1| probable tRNA modification GTPase TrmE [Haemophilus influenzae 86-028NP] Length = 452 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 167/455 (36%), Positives = 255/455 (56%), Gaps = 23/455 (5%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64 KETI A +T I I+R+SGP +V + I K P PR A F DG ILD+G Sbjct: 2 KETIVAQATAPGRGGIGILRVSGPLATKVAQAILGKC-PKPRMADYLPFKDADGTILDQG 60 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 + + F SP SFTGED E HGG V++ +L+ + ++ +RLA PGEFS +AF N K+D Sbjct: 61 IALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQIDGIRLARPGEFSEQAFLNDKLD 120 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ADLI + +E R +++ + GE S + +D + ++R+++EA +DF +EE + Sbjct: 121 LAQAEAIADLIDATSEQAARSALKSLQGEFSKKVNELVDSVIYLRTYVEASIDFPDEE-I 179 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + ++ ++ + N + + S+ K G I+R G K+VI G NAGKSSL NALA ++ Sbjct: 180 DFLADGKIEANLRGIINQLENVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREA 239 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIVTDI GTTRDVL + ++G + I DTAG+R+ D VE+ GI R + E+E AD I+L Sbjct: 240 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDATDEVERIGISRAWTEIEQADRIIL 299 Query: 305 -----------LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347 L ++ S+ P + + K DL E + +S+ T Sbjct: 300 MLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKIDLNGEQASESEQGGYQIISLSAQT 359 Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDII 405 +G++ L + +K + + + + +RHL L + +L+ + L E G +++ Sbjct: 360 HDGVKLLRDHLKQAMGFQ-TGIEGGFLARRRHLDALEKAAEHLQIGLVQLTEFHAG-ELL 417 Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 AE LRL L +ITG + LL IFS FCIGK Sbjct: 418 AEELRLVQSYLSEITGQFTSDDLLGNIFSSFCIGK 452 >gi|194909733|ref|XP_001981998.1| GG12352 [Drosophila erecta] gi|190656636|gb|EDV53868.1| GG12352 [Drosophila erecta] Length = 493 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 169/478 (35%), Positives = 261/478 (54%), Gaps = 52/478 (10%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK--PFPRKASLRYFFGLDGR-ILDK 63 TI+++S+G + +S+IR+SGP + I K+ P R+A L+ F+ + ++D+ Sbjct: 24 TIYSLSSGHVKCGVSVIRVSGPQTKKALRAIVANKEYEPKARQAYLKSFYHPASKEMIDR 83 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 GLL+ FP P SFTGEDS EF VHG +AV+ +L+ L ++ LR A PGEF++RAF GK+ Sbjct: 84 GLLLWFPGPASFTGEDSCEFQVHGSLAVIAAMLDALGRVDGLRPAAPGEFTKRAFFGGKL 143 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL E E LADLI +ETE QR+ ++ +G L+ LY W +L + +EA +DF+EEE Sbjct: 144 DLTEVEGLADLIHAETEAQRKQALLQSTGALARLYDNWRRRLIRCAAHLEAYIDFAEEEQ 203 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 ++ ++ ++ +K +I H+S + GE++R+G + VI+G N GKSSL N L ++ Sbjct: 204 IEGGIILQLGKELKAVKREIREHLSDQRQGELLRDGVRTVIIGAPNVGKSSLLNLLCQRS 263 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEVENADLI 302 V+IVTD GTTRD++ + GY V SDTAG+R T D +E+EG++R V +DLI Sbjct: 264 VSIVTDQAGTTRDIIETMHNFGGYPVVFSDTAGLRRYTTDSIEQEGMQRAKNCVVQSDLI 323 Query: 303 LLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSI- 361 LLL E + +++ + + +Y E D + +G+ L+ + NK ++ Sbjct: 324 LLLAEAKNIAQLTHDDAV--------APFVDSYLGELDIPLDMCSGKRLQLVANKTDTLS 375 Query: 362 ---------LSN-------KFKKLPFSIPSHKRHLYHL-----------------SQTVR 388 LSN K K+P + S ++ L L Q R Sbjct: 376 DEEHQQLDKLSNVLAISCHKPDKMPVFLGSLEKQLQELCGEPQAENPRITNTRYRQQLER 435 Query: 389 YLEMASLNEKDCGLD------IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +E + +D D I A LR A + +ITG + E +LD++F FCIGK Sbjct: 436 CIENIDIFLRDYRPDVYPDMAIAASKLRNAVRCIERITGHISCEDILDVVFKDFCIGK 493 >gi|113972266|ref|YP_736059.1| tRNA modification GTPase TrmE [Shewanella sp. MR-4] gi|123324470|sp|Q0HD65|MNME_SHESM RecName: Full=tRNA modification GTPase mnmE gi|113886950|gb|ABI41002.1| tRNA modification GTPase trmE [Shewanella sp. MR-4] Length = 453 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 165/453 (36%), Positives = 255/453 (56%), Gaps = 21/453 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + IIR+SG V + P PR A F G+++D+G+ Sbjct: 4 DTIVAQATAPGRGGVGIIRISGDKATDVAMAVLGHL-PKPRYADYCDFKNASGQVIDQGI 62 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + F P SFTGED E HGG V++ +++ + ++ +R+A PGEFS +AF N K+DL Sbjct: 63 ALFFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVLEVEGIRIAKPGEFSEQAFMNDKLDL 122 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E + +++ + GE S + +D++TH+R ++EA +DF +EE V Sbjct: 123 TQAEAIADLIDATSEQAAKSALQSLQGEFSKEVHELVDQVTHLRLYVEAAIDFPDEE-VD 181 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S ++ N + + + +S + K G IIR G K+VI G NAGKSSL NALA K+ A Sbjct: 182 FLSDGKIANALYKIIDKLSVVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKESA 241 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVT+I GTTRDVL + L+G + I DTAG+R+T D VE+ GI+R + E+ +AD +L + Sbjct: 242 IVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTTDTVEQIGIERAWNEINSADRVLFM 301 Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYS---TYTEEYD---HLISSFTG 348 + + + P N+ + K+DL TEE + IS+ TG Sbjct: 302 VDGTTTDAVDPHDIWPDFIDRLPANLGVTVVRNKADLTGENLAMTEEKGYSVYRISAKTG 361 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407 G+EEL +KS++ + L + +RHL L +L++ E +++AE Sbjct: 362 LGVEELKQHLKSLMGYQ-SNLEGGFIARRRHLEALDVAASHLQLGKEQLEIYLAGELLAE 420 Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LR+A ++L +ITG + LL IFS FCIGK Sbjct: 421 ELRMAQLALSEITGRFTSDDLLGKIFSSFCIGK 453 >gi|148826352|ref|YP_001291105.1| tRNA modification GTPase TrmE [Haemophilus influenzae PittEE] gi|166200480|sp|A5UD71|MNME_HAEIE RecName: Full=tRNA modification GTPase mnmE gi|148716512|gb|ABQ98722.1| tRNA modification GTPase TrmE [Haemophilus influenzae PittEE] Length = 452 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 169/455 (37%), Positives = 258/455 (56%), Gaps = 23/455 (5%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64 KETI A +T I I+R+SGP +V + I K P PR A F DG ILD+G Sbjct: 2 KETIVAQATAPGRGGIGILRVSGPLATEVAQAILGKC-PKPRMADYLPFKDADGTILDQG 60 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 + + F SP SFTGED E HGG V++ +L+ + ++ +RLA PGEFS +AF N K+D Sbjct: 61 IALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQIDGIRLARPGEFSEQAFLNDKLD 120 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ADLI + +E R +++ + GE S + +D + ++R+++EA +DF +EE + Sbjct: 121 LAQAEAIADLIDATSEQAARSALKSLQGEFSKKVNELVDSVIYLRTYVEASIDFPDEE-I 179 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + ++ ++ + N + + S+ K G I+R G K+VI G NAGKSSL NALA ++ Sbjct: 180 DFLADGKIEANLRGIINQLENVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREA 239 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIVTDI GTTRDVL + ++G + I DTAG+R+ D VE+ GI R + E+E AD I+L Sbjct: 240 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDATDEVERIGISRAWTEIEQADRIIL 299 Query: 305 -----------LKEINSKKEISFPKNIDFIFIGTKSDL---YSTYTEEYDHLI---SSFT 347 L ++ S+ P + + K DL ++ +EE + I S+ T Sbjct: 300 MLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKIDLNGEQASESEEGGYQIISLSAQT 359 Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDII 405 +G++ L +K + + + + +RHL L + +L+ + L E G +++ Sbjct: 360 HDGVKLLREHLKQAMGFQ-TGIEGGFLARRRHLDALEKAAEHLQIGLVQLTEFHAG-ELL 417 Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 AE LRL L +ITG + LL IFS FCIGK Sbjct: 418 AEELRLVQSYLSEITGQFTSDDLLGNIFSSFCIGK 452 >gi|187479888|ref|YP_787913.1| tRNA modification GTPase TrmE [Bordetella avium 197N] gi|123513530|sp|Q2KTI2|MNME_BORA1 RecName: Full=tRNA modification GTPase mnmE gi|115424475|emb|CAJ51029.1| probable tRNA modification GTPase [Bordetella avium 197N] Length = 450 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 170/450 (37%), Positives = 250/450 (55%), Gaps = 23/450 (5%) Query: 8 IFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLI 67 I A++T I ++R+SGP + + PR A F DG +D+G+ I Sbjct: 7 IAAIATAPGRGGIGVVRVSGPRLDAYIRALLGRDL-TPRHAHYLPFLAEDGERIDEGIAI 65 Query: 68 VFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEFSRRAFENGKID 124 F P S+TGED E HGG AV+ +L E + +RLA PGEF+RRAF N ++D Sbjct: 66 YFQGPHSYTGEDVLELQGHGGPAVLKRLLARCLEAGRSLGMRLAEPGEFTRRAFLNDRMD 125 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED- 183 L +AE++ADLI + +E R +M +SGE S ++ H+R +EA LDF EEE Sbjct: 126 LAQAEAVADLIEASSEAAARGAMASLSGEFSQRINDLSGRIVHLRMLVEATLDFPEEEID 185 Query: 184 -VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 ++ + ++ L+ L+ D+ + I+Q + G I+R G +V+ G N GKSSL NALA Sbjct: 186 FLEKYQARPTLDG---LRQDLDTLIAQARQGIILREGLHVVLAGQPNVGKSSLLNALAGD 242 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 D+AIVT I GTTRD + ++ ++G + I DTAG+RET+D VE GI RT+ E+E ADLI Sbjct: 243 DIAIVTPIAGTTRDKVVQEIFIDGVPLHIVDTAGLRETEDTVESIGIARTWKEIERADLI 302 Query: 303 LLLKEINSKKEI-------SFPKNIDFIFIGTKSDLYSTYTE--EYDHLISSFTGEGLEE 353 L L++ + +I P + + K DL ++ + E IS+ G GLEE Sbjct: 303 LHLQDATAPGDILDVDITARLPARTPVLAVFNKIDLLTSTAQLAENSIGISAKQGLGLEE 362 Query: 354 LINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LNEKDCGLDIIAENLR 410 L ++ + N + P+ + +RHL+ L +L++A+ + D LD+ AE LR Sbjct: 363 LRARLLQMAGWNPGAESPWL--ARERHLHALQAARDHLDIAAEHASHDDRVLDLFAEELR 420 Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L+ SL ITG + LL IFS FCIGK Sbjct: 421 LSHESLSSITGKFTSDDLLGEIFSSFCIGK 450 >gi|259417693|ref|ZP_05741612.1| tRNA modification GTPase TrmE [Silicibacter sp. TrichCH4B] gi|259346599|gb|EEW58413.1| tRNA modification GTPase TrmE [Silicibacter sp. TrichCH4B] Length = 428 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 163/438 (37%), Positives = 254/438 (57%), Gaps = 14/438 (3%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TIFA++T + +++IR+SGP+ QV + + ++ P R +G+ILD+ L Sbjct: 2 DTIFALATSQGKAGVAVIRVSGPNAIQVGKNLTRRTLP-ARGMIFSKLKDKEGQILDEAL 60 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNL-RLANPGEFSRRAFENGKID 124 ++ F +P+SFTGE+ EF +HG AVV+ ++ L ++ NL RLA+PGEF+RRA +NGK+D Sbjct: 61 VLSFTAPDSFTGENIVEFQIHGSTAVVSAVMSAL-EVSNLARLADPGEFTRRALDNGKLD 119 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L + E LADLI +ETE QR+ + +SG L +L +W L S IE +DF++EE V Sbjct: 120 LTQVEGLADLIDAETEAQRKQAQVILSGALGALADRWRTDLIRAASLIEVTIDFADEE-V 178 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + EV + + DI + + E IR G+++ I+G N GKS+L NALA ++ Sbjct: 179 PVDVTPEVGALLFGVFTDIQKEVQGVSIAERIREGFEVAIVGSPNVGKSTLLNALAGRNA 238 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AI ++ GTTRDV+ + +DL G V + DTAG+R+TDD VE GI+ AD+ + Sbjct: 239 AITSEYAGTTRDVIEVRMDLAGLPVTLLDTAGLRDTDDHVEGIGIQLAQERANAADIRVF 298 Query: 305 LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364 L E N ++ F ++ D + + +T IS TG+G+++L++ I S L N Sbjct: 299 LAEENETFDVPF-RDGDLSLLPKADERDATR-----GAISGKTGQGIDDLVSHIASTLKN 352 Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLASVSLGKITGC 422 + I + RH + + + L+ A L + D+ AE++R A +L + G Sbjct: 353 RSTHA--GIATRARHRDAMKRALESLQRAIDVLQQGPEFYDLAAEDMRSAIRALELLVGR 410 Query: 423 VDVEQLLDIIFSKFCIGK 440 +DVE LLD IFS FC+GK Sbjct: 411 IDVENLLDEIFSSFCLGK 428 >gi|145634177|ref|ZP_01789888.1| tRNA modification GTPase [Haemophilus influenzae PittAA] gi|145268621|gb|EDK08614.1| tRNA modification GTPase [Haemophilus influenzae PittAA] Length = 452 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 167/455 (36%), Positives = 254/455 (55%), Gaps = 23/455 (5%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64 KETI A +T I I+R+SGP +V + I K P PR A F DG ILD+G Sbjct: 2 KETIVAQATAPGRGGIGILRVSGPLATEVAQAILGKC-PKPRMADYLPFKDADGTILDQG 60 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 + + F SP SFTGED E HGG V++ +L+ + ++ +RLA PGEFS +AF N K+D Sbjct: 61 IALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQIDGIRLARPGEFSEQAFLNDKLD 120 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ADLI + +E R +++ + GE S + +D + ++R+++EA +DF +EE + Sbjct: 121 LAQAEAIADLIDATSEQAARSALKSLQGEFSKKVNELVDSVIYLRTYVEASIDFPDEE-I 179 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + ++ ++ + N + + S+ K G I+R G K+VI G NAGKSSL NALA ++ Sbjct: 180 DFLADGKIEANLRGIINQLENVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREA 239 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIVTDI GTTRDVL + ++G + I DTAG+R+ D VE+ GI R + E+E AD I+L Sbjct: 240 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDATDEVERIGISRAWTEIEQADRIIL 299 Query: 305 -----------LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347 L ++ S+ P + + K DL E + +S+ T Sbjct: 300 MLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKIDLNGEQASESEQGGYQIISLSAQT 359 Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDII 405 +G++ L +K + + + + +RHL L + +L+ + L E G +++ Sbjct: 360 HDGVKLLREHLKQAMGFQ-TGIEGGFLARRRHLDALEKAAEHLQIGLVQLTEFHAG-ELL 417 Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 AE LRL L +ITG + LL IFS FCIGK Sbjct: 418 AEELRLVQSYLSEITGQFTSDDLLGNIFSSFCIGK 452 >gi|82703888|ref|YP_413454.1| tRNA modification GTPase TrmE [Nitrosospira multiformis ATCC 25196] gi|123543757|sp|Q2Y5A9|MNME_NITMU RecName: Full=tRNA modification GTPase mnmE gi|82411953|gb|ABB76062.1| tRNA modification GTPase trmE [Nitrosospira multiformis ATCC 25196] Length = 452 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 164/453 (36%), Positives = 254/453 (56%), Gaps = 23/453 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 + I A++T I ++R+SG + Q P PR+ASL F + R++D+G+ Sbjct: 5 DVIAAIATPPGRGGIGVVRVSGRN-LQSLALKVAGCVPEPRRASLTRFRDENDRVIDQGI 63 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + FP+P+S+TGE+ E HGG AV+N +L RLA PGEF+ RAF N K+DL Sbjct: 64 ALYFPAPQSYTGEEVLELQGHGGPAVMNLLLASCLSA-GARLAQPGEFTLRAFLNNKLDL 122 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AES+ADLI + TE R ++ + GE S+ + LT +R +EA LDFSEEE ++ Sbjct: 123 AQAESVADLIDASTEEAARCAIRSLQGEFSNAIHTSVQALTDLRMLVEASLDFSEEE-IE 181 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S +E+ + ++ + S + G ++R G I ++G N GKSSL N LA ++VA Sbjct: 182 FISGRELEFRLEHIRQQLEQVFSAARQGSLLREGIWIALVGQPNVGKSSLLNRLAGEEVA 241 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 +VT++PGTTRDV+ +++EG + + DTAG+RET+D +EK G+ RT ++ A ++LLL Sbjct: 242 LVTEVPGTTRDVIRQVIEIEGVPMHLLDTAGLRETEDAIEKMGMARTRSTIDKASIVLLL 301 Query: 306 KEINSKKEI---------SFPKNIDFIFIGTKSDL--------YSTYTEEYDHLISSFTG 348 ++S+ I S P + I + K+DL ST T D +S+ TG Sbjct: 302 --VDSRVGITPEDQAILASLPPGLRLIVVHNKTDLLESPPNSTVSTATATADIWVSAKTG 359 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDIIAE 407 G+ L + ++ + + + +RHL L+ +LE A +L +++ AE Sbjct: 360 AGIGSLQQGLLEMIGWQPSTGEGAFMARQRHLSALTAARTHLEAACALANSLDQVELFAE 419 Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LRLA ++L ITG + LL IFS+FCIGK Sbjct: 420 ELRLAQLALSSITGEFSADDLLGEIFSRFCIGK 452 >gi|260870437|ref|YP_003236839.1| GTPase TrmE [Escherichia coli O111:H- str. 11128] gi|257766793|dbj|BAI38288.1| GTPase TrmE [Escherichia coli O111:H- str. 11128] gi|323177718|gb|EFZ63302.1| tRNA modification GTPase TrmE [Escherichia coli 1180] Length = 454 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 166/459 (36%), Positives = 255/459 (55%), Gaps = 29/459 (6%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63 + +TI A +T + I+R+SG +V E + K P PR A F +G +LD+ Sbjct: 3 DNDTIVAQATPPGRGGVGILRISGLKAREVAETVLGKL-PKPRYADYLPFKDANGSVLDQ 61 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 G+ + FP P SFTGED E HGG +++ +L+ + +P LR+A PGEFS RAF K+ Sbjct: 62 GIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLYDKL 121 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL +AE++ADLI + +E R ++ + G S+ ++ LTH+R ++EA +DF +EE Sbjct: 122 DLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE- 180 Query: 184 VQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 + S ++ LND++ D+ + ++ + G ++R G K+VI G NAGKSSL NALA Sbjct: 181 IDFLSDGKIEAQLNDVI---ADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+E AD Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 297 Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDHL---I 343 +L + + + + P + + K+D+ +E H + Sbjct: 298 RVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRL 357 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401 S+ TGEG++ L N +K + + + +RHL L Q +L+ A L G Sbjct: 358 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWAG 416 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LRLA +L +ITG + LL IFS FCIGK Sbjct: 417 -ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454 >gi|300115604|ref|YP_003762179.1| tRNA modification GTPase TrmE [Nitrosococcus watsonii C-113] gi|299541541|gb|ADJ29858.1| tRNA modification GTPase TrmE [Nitrosococcus watsonii C-113] Length = 459 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 162/450 (36%), Positives = 252/450 (56%), Gaps = 20/450 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A++T ++ I+R+SGP C QV + + + P PR A YF DG ++D+G+ Sbjct: 15 DTIAAIATPPGQGSVGIVRVSGPLCRQVAKQVTGRV-PLPRYALFGYFRNRDGELIDQGV 73 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + FP P SFTGED E HG AV++ +L + ++ RLA PGEFS RAF N KIDL Sbjct: 74 ALYFPGPHSFTGEDVLELQGHGSPAVMDWLLSRVLQL-GARLARPGEFSERAFLNNKIDL 132 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI S ++ R ++ + GE S+ ++LT +R +EA++DFS+E D+ Sbjct: 133 AQAEAIADLIESASDQAARSALRSLHGEFSAQIRDLREQLTELRCVVEANIDFSDE-DID 191 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 V + +++ + S + G ++R G K+V+ G N GKSSL N LA + A Sbjct: 192 FIERGAVAERLKGIQSTLQSIHRSARQGALLREGIKVVLAGRPNVGKSSLHNRLAGFEAA 251 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL- 304 IVTD+PGTTRD+L + ++G + +SDTAG+ ++ D +E+EG++RT E+ +AD +LL Sbjct: 252 IVTDVPGTTRDLLREHVTIDGLPIHLSDTAGLHDSRDTIEQEGMRRTREELTHADHVLLV 311 Query: 305 ------LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFTGEGLE 352 L E+ P N+ + I K DL ++ +S+ TG G++ Sbjct: 312 ADDQSGLTEVEQAILDELPDNVTYTLIFNKVDLSGASVGRWEDPQGIALRLSALTGAGMD 371 Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LNEKDCGLDIIAENLR 410 L ++K ++ + + +RHL L + + +A L EK +++AE LR Sbjct: 372 LLRQRLKECAGFDGEREGY-FSARRRHLEALQRAGAAVVVARKILREKGAE-EMLAEELR 429 Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A SL +ITG + LL IFS FCIGK Sbjct: 430 QAQNSLAEITGEYRADDLLGEIFSTFCIGK 459 >gi|311281727|ref|YP_003943958.1| tRNA modification GTPase TrmE [Enterobacter cloacae SCF1] gi|308750922|gb|ADO50674.1| tRNA modification GTPase TrmE [Enterobacter cloacae SCF1] Length = 454 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 165/459 (35%), Positives = 253/459 (55%), Gaps = 24/459 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+H +TI A +T + I+R+SG +V E + K P PR A F DG Sbjct: 1 MSH-NDTIVAQATPPGRGGVGILRISGLKAREVAEAVLGKL-PKPRYADYLPFNDADGAA 58 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG +++ +L+ + +P LR+A PGEFS RAF N Sbjct: 59 LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + +E R ++ + G S+ ++ LTH+R ++EA +DF + Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + S ++ + + D+ + ++ + G ++R G K+VI G NAGKSSL NALA Sbjct: 179 EE-IDFLSDGKIEAQLNGVMADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + ++G + I DTAG+R+ D VE+ GI+R + E+E AD Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQAD 297 Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYS---TYTEEYDH---LI 343 +L + + + + P N+ + K+D+ +E H + Sbjct: 298 RVLFMVDGTTTDAVDPAQIWPDFIARLPTNLPITVVRNKADMTGEAVGLSEVNGHSLIRL 357 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401 S+ GEG++ L N +K + + + +RHL L +L+ A L G Sbjct: 358 SARQGEGVDLLRNHLKQSMGFD-TNMEGGFLARRRHLQALETAANHLQQGKAQLIGAWAG 416 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LRLA +L +ITG + LL IFS FCIGK Sbjct: 417 -ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454 >gi|145640677|ref|ZP_01796260.1| tRNA modification GTPase [Haemophilus influenzae R3021] gi|145274603|gb|EDK14466.1| tRNA modification GTPase [Haemophilus influenzae 22.4-21] Length = 452 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 167/455 (36%), Positives = 253/455 (55%), Gaps = 23/455 (5%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64 KETI A +T I I+R+SGP +V + I K P PR A F DG ILD+G Sbjct: 2 KETIVAQATAPGRGGIGILRVSGPLATKVAQAILGKC-PKPRMADYLPFKDADGTILDQG 60 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 + + F SP SFTGED E HGG V++ +L+ + ++ +RLA PGEFS +AF N K+D Sbjct: 61 IALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQIDGIRLARPGEFSEQAFLNDKLD 120 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ADLI + +E R +++ + GE S + +D + ++R+++EA +DF +EE + Sbjct: 121 LAQAEAIADLIDATSEQAVRSALKSLQGEFSKKVNELVDSVIYLRTYVEASIDFPDEE-I 179 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + ++ ++ + N + S+ K G I+R G K+VI G NAGKSSL NALA ++ Sbjct: 180 DFLADGKIEANLRGIINQLEDVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREA 239 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIVTDI GTTRDVL + ++G + I DTAG+R+ D VE+ GI R + E+E AD I+L Sbjct: 240 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDATDEVERIGISRAWTEIEQADRIIL 299 Query: 305 -----------LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347 L ++ S+ P + + K DL E + +S+ T Sbjct: 300 MLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKIDLNGEQASESEQGGYQIISLSAQT 359 Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDII 405 +G++ L +K + + + + +RHL L + +L+ + L E G +++ Sbjct: 360 HDGVQLLREHLKQAMGFQ-TGMEGGFLARRRHLDALDKAAEHLQIGLVQLTEFHAG-ELL 417 Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 AE LRL L +ITG + LL IFS FCIGK Sbjct: 418 AEELRLVQSYLSEITGQFTSDDLLGSIFSSFCIGK 452 >gi|238750293|ref|ZP_04611795.1| tRNA modification GTPase mnmE [Yersinia rohdei ATCC 43380] gi|238711526|gb|EEQ03742.1| tRNA modification GTPase mnmE [Yersinia rohdei ATCC 43380] Length = 497 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 165/454 (36%), Positives = 248/454 (54%), Gaps = 23/454 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + I+R+SG + V + + K P PR A F +DG LD+G+ Sbjct: 48 DTIVAQATPPGRGGVGILRVSGRAAASVAQAVLGKL-PKPRYADYLPFKDIDGSTLDQGI 106 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + FP P SFTGED E HGG +++ +L+ + +P LR+A PGEFS RAF N K+DL Sbjct: 107 ALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILALPGLRIARPGEFSERAFLNDKLDL 166 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E R ++ + G S Q ++ LTH+R ++EA +DF +EE + Sbjct: 167 AQAEAIADLIDASSEQAARSAVNSLQGAFSVRIHQLVEALTHLRIYVEAAIDFPDEE-ID 225 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S ++ + + D+ ++ + G ++R G K+VI G NAGKSSL NALA ++ A Sbjct: 226 FLSDGKIEGQLNGVMADLEQVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAA 285 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTDI GTTRDVL + ++G + I DTAG+RE +D VE+ GI+R + E+E AD +L + Sbjct: 286 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREANDEVERIGIERAWHEIEQADRVLFM 345 Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDH---LISSFTG 348 + + P + + K+D+ TE H +S+ TG Sbjct: 346 VDGTTTDATEPAAIWPEFMARLPATLPITVVRNKADVTGETLGLTEVNGHSLIRLSARTG 405 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIA 406 EG++ L N +K + + +RHL L ++L L G +++A Sbjct: 406 EGIDLLRNHLKQCMGFT-SNTEGGFLARRRHLQALETAAQHLVQGHEQLVSARAG-ELLA 463 Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E LRLA SL +ITG + LL IFS FCIGK Sbjct: 464 EELRLAQQSLSEITGEFSSDDLLGRIFSSFCIGK 497 >gi|296313895|ref|ZP_06863836.1| tRNA modification GTPase TrmE [Neisseria polysaccharea ATCC 43768] gi|296839424|gb|EFH23362.1| tRNA modification GTPase TrmE [Neisseria polysaccharea ATCC 43768] Length = 448 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 167/456 (36%), Positives = 255/456 (55%), Gaps = 24/456 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+ TI AV+T + +IR+SG + + E +C K P PR A+ F DG+ Sbjct: 1 MSDNVPTIAAVATAPGRGGVGVIRISGKNLLPMAEALCGKT-PKPRVATYADFTDADGQA 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D GLL+ F +P SFTGED E HGG V++ +L ++ RLA PGEF++RAF N Sbjct: 60 IDSGLLLFFAAPASFTGEDVIELQGHGGPVVMDMLLNRCLEL-GARLAEPGEFTKRAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE +ADLI + + RL++ + G+ S ++ L +R +EA LDF E Sbjct: 119 DKLDLAQAEGVADLIDASSRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEATLDFPE 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E D+ + + + L+ + ++ + G I+R G +V++G N GKSSL NALA Sbjct: 179 E-DIDFLEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 +VAIVTDI GTTRD + + ++G V I DTAG+RETDD+VE+ GI+R+ V AD Sbjct: 238 GDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEAD 297 Query: 301 LILLLKE----INSKKEI---SFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347 + L+L + +N K + P + I I +KSDL++ + +S+ T Sbjct: 298 VALVLVDPREGVNDKTRAILDALPSELKRIEIHSKSDLHAHAAGGFGTGAETVIALSAKT 357 Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG---LDI 404 G+GL+ L + + + + + RH+ L L +A+L CG +++ Sbjct: 358 GDGLDALKRTLLREAGWQGESEGLFL-ARTRHVNALKAAQEELSLAAL----CGNHQIEL 412 Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +AE+LRLA V+ G+ITG + LL +IFS+FCIGK Sbjct: 413 LAEHLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448 >gi|332253640|ref|XP_003275944.1| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial-like [Nomascus leucogenys] Length = 415 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 165/439 (37%), Positives = 239/439 (54%), Gaps = 63/439 (14%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFF-GLDGRILDKG 64 TIFA+S+G I++IR SGP+ + + P R ASLR G LD+ Sbjct: 35 TIFALSSGQGRCGIAVIRTSGPASGHALRILTAPRDLPPARHASLRLLSDPRSGEPLDRA 94 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 L++ FPSP+SFTGED EFHVHGG+AVV+G+L+ L +P LR A GEF+RRAF NGK++ Sbjct: 95 LVLWFPSPQSFTGEDCVEFHVHGGLAVVSGVLQALGSVPGLRPAEAGEFTRRAFANGKLN 154 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L E E LADLI +ETE QRR ++ + GEL L W + LT + +EA +DF E++++ Sbjct: 155 LTEVEGLADLIHAETEAQRRQALRQLDGELGHLCRGWAETLTKALAHVEAYIDFGEDDNL 214 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + ++ ++ L+ + +H+ + G+ +R+G +V+ G NAGKSSL N L++K V Sbjct: 215 EEGVLEQADIEVRALEVALGAHLRDARRGQRLRSGAHVVVTGPPNAGKSSLVNLLSRKPV 274 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 +IV+ PGTTRDVL +DL G+ V +SDTAG+RE VE+EG++R Sbjct: 275 SIVSPEPGTTRDVLETPVDLAGFPVLLSDTAGLREGVGPVEQEGVRRA------------ 322 Query: 305 LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364 +E + +D + T S L+SS G+ Sbjct: 323 -RE----------RWVDRVIGKTMS------------LVSSRCGD--------------- 344 Query: 365 KFKKLPFSIP---SHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITG 421 P + P + RH +HL + L KD L + AE LR+A L ++TG Sbjct: 345 -----PSTDPPLLTRARHQHHLQGCLDALGHYK-QSKD--LALAAEALRVARGHLTRLTG 396 Query: 422 CVDVEQLLDIIFSKFCIGK 440 E++LDIIF FC+GK Sbjct: 397 GGGTEEILDIIFRDFCVGK 415 >gi|262040470|ref|ZP_06013713.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259042223|gb|EEW43251.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 454 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 163/459 (35%), Positives = 255/459 (55%), Gaps = 24/459 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+H +TI A +T + I+R+SG V + + K P PR A F +DG Sbjct: 1 MSH-NDTIVAQATPPGRGGVGILRISGLKARDVAQAVLGKL-PKPRYADYLPFNDVDGTP 58 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG +++ +L+ + +P LR+A PGEFS RAF N Sbjct: 59 LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIARPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + +E R ++ + G S+ ++ LTH+R ++EA +DF + Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + S ++ + + D+ + ++ + G ++R G K+VI G NAGKSSL NALA Sbjct: 179 EE-IDFLSDGKIEAQLHEVMADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + ++G + I DTAG+R+ +D VE+ GI+R + E+ AD Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDANDEVERIGIERAWQEIAQAD 297 Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYS-----TYTEEYDHL-I 343 +L + + + + P + + K+D+ + + H+ + Sbjct: 298 RVLFMVDGTTTGAVDPAEIWPDFIERLPAKLPITVVRNKADVTGEALGISEVNGHSHIRL 357 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401 S+ TGEG+E L N +K + + + +RHL L + +L+ A L G Sbjct: 358 SARTGEGVEVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEEAANHLQQGKAQLLGAWAG 416 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LRLA +L +ITG + LL IFS FCIGK Sbjct: 417 -ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454 >gi|254804213|ref|YP_003082434.1| putative tRNA modification GTPase [Neisseria meningitidis alpha14] gi|254667755|emb|CBA03677.1| putative tRNA modification GTPase [Neisseria meningitidis alpha14] Length = 448 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 166/456 (36%), Positives = 255/456 (55%), Gaps = 24/456 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+ TI AV+T + +IR+SG + + + +C K P PR A+ F DG+ Sbjct: 1 MSDNVPTIAAVATAPGRGGVGVIRISGKNLLPMAQALCGKT-PKPRTATYADFTDADGQA 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D GLL+ F +P SFTGED E HGG V++ +L ++ RLA PGEF++RAF N Sbjct: 60 IDSGLLLFFAAPASFTGEDVIELQGHGGPVVMDMLLNRCLEL-GARLAEPGEFTKRAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE +ADLI + + RL++ + G+ S ++ L +R +EA LDF E Sbjct: 119 DKLDLAQAEGVADLIDASSRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEATLDFPE 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E D+ + + + L+ + ++ + G I+R G +V++G N GKSSL NALA Sbjct: 179 E-DIDFLEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 +VAIVTDI GTTRD + + ++G V I DTAG+RETDD+VE+ GI+R+ V AD Sbjct: 238 GDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEAD 297 Query: 301 LILLLKE----INSKKEI---SFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347 + L+L + +N K + P + I I +KSDL++ + +S+ T Sbjct: 298 VALVLVDPREGVNDKTRAILDALPPELKRIEIHSKSDLHAHAAGGFGTGAETVIALSAKT 357 Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG---LDI 404 G+GL+ L + + + + + RH+ L L +A+L CG +++ Sbjct: 358 GDGLDALKRTLLREAGWQGESEGLFL-ARTRHVNALKAAQEELSLAAL----CGNHQIEL 412 Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +AE+LRLA V+ G+ITG + LL +IFS+FCIGK Sbjct: 413 LAEHLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448 >gi|301169727|emb|CBW29328.1| GTPase [Haemophilus influenzae 10810] Length = 452 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 167/455 (36%), Positives = 253/455 (55%), Gaps = 23/455 (5%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64 KETI A +T I I+R+SGP +V + I K P PR A F DG ILD+G Sbjct: 2 KETIVAQATAPGRGGIGILRVSGPLATKVAQAILGKC-PKPRMADYLPFKDADGTILDQG 60 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 + + F SP SFTGED E HGG V++ +L+ + ++ +RLA PGEFS +AF N K+D Sbjct: 61 IALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQIDGIRLARPGEFSEQAFLNDKLD 120 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ADLI + +E R +++ + GE S + +D + ++R+++EA +DF +EE + Sbjct: 121 LAQAEAIADLIDATSEQAVRSALKSLQGEFSKKVNELVDSVIYLRTYVEASIDFPDEE-I 179 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + ++ ++ + N + S+ K G I+R G K+VI G NAGKSSL NALA ++ Sbjct: 180 DFLADGKIEANLRGIINQLEDVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREA 239 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIVTDI GTTRDVL + ++G + I DTAG+R+ D VE+ GI R + E+E AD I+L Sbjct: 240 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDATDEVERIGISRAWTEIEQADRIIL 299 Query: 305 -----------LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347 L ++ S+ P + + K DL E + +S+ T Sbjct: 300 MLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKIDLNGEQASESEQGGYQMISLSAQT 359 Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDII 405 +G++ L +K + + + + +RHL L + +L+ + L E G +++ Sbjct: 360 HDGVQLLREHLKQAMGFQ-TGMEGGFLARRRHLDALDKAAEHLQIGLVQLTEFHAG-ELL 417 Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 AE LRL L +ITG + LL IFS FCIGK Sbjct: 418 AEELRLVQSYLSEITGQFTSDDLLGNIFSSFCIGK 452 >gi|195504826|ref|XP_002099245.1| GE10804 [Drosophila yakuba] gi|194185346|gb|EDW98957.1| GE10804 [Drosophila yakuba] Length = 493 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 169/478 (35%), Positives = 260/478 (54%), Gaps = 52/478 (10%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK--PFPRKASLRYFFGLDGR-ILDK 63 TI+++S+G + +S+IR+SGP + I K+ P R+A L+ F+ + ++D+ Sbjct: 24 TIYSLSSGHVKCGVSVIRVSGPQTKKALRAIVANKEYEPKARQAYLKSFYHPASKEMIDR 83 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 GLL+ FP P SFTGEDS EF VHG +AV+ +L+ L K+ LR A PGEF++RAF GK+ Sbjct: 84 GLLLWFPGPASFTGEDSCEFQVHGSLAVIAAMLDALGKVDGLRPAEPGEFTKRAFFGGKL 143 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL E E LADLI +ETE QR+ ++ +G L+ LY W +L + +EA +DF+EEE Sbjct: 144 DLTEVEGLADLIHAETEAQRKQALLQSTGALARLYDNWRRRLIRCAAHLEAYIDFAEEEQ 203 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 ++ ++ ++ +K +I H+S + GE++R+G + VI+G N GKSSL N L ++ Sbjct: 204 IEGGIILQLGKELKAVKREIREHLSDQRQGELLRDGVRTVIIGAPNVGKSSLLNLLCQRS 263 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEVENADLI 302 V+IVTD GTTRD++ + GY V SDTAG+R T D +E+EG++R + +DLI Sbjct: 264 VSIVTDQAGTTRDIIETMHNFGGYPVVFSDTAGLRRYTTDSIEQEGMQRAKNCLVQSDLI 323 Query: 303 LLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSI- 361 LLL E +++ + + +Y E D + +G+ L+ + NK ++ Sbjct: 324 LLLAEAKHIAQLTHDDAV--------APFVDSYLGELDIPLDMCSGKRLQLVANKTDTLS 375 Query: 362 ---------LSN-------KFKKLPFSIPSHKRHLYHL-----------------SQTVR 388 LSN K K+P + S ++ L L Q R Sbjct: 376 DEEHQQLDKLSNVLAISCHKPDKMPVFLGSLEKQLQELCGEPRAENPRITNTRYRQQLER 435 Query: 389 YLEMASLNEKDCGLD------IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +E + +D D I A LR A + +ITG + E +LD++F FCIGK Sbjct: 436 CIENIDIFLRDYRPDVYPDMAIAASKLRNAVRCIERITGHISCEDILDVVFKDFCIGK 493 >gi|294671265|ref|ZP_06736117.1| hypothetical protein NEIELOOT_02974 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291306992|gb|EFE48235.1| hypothetical protein NEIELOOT_02974 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 454 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 166/458 (36%), Positives = 257/458 (56%), Gaps = 22/458 (4%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+ + TI A++T + +IRLSG + + + + K P PR A F G DG+ Sbjct: 1 MSATQPTIAAIATAPGRGGVGVIRLSGKNLLPLAQTLSGGKTPKPRTALYTDFLGGDGQP 60 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D G+L+ F +P SFTGED E HGG V++ +L ++ R+A PGEF++RAF N Sbjct: 61 IDNGILLYFAAPASFTGEDVIELQGHGGPVVMDMLLSRCLEL-GARMAEPGEFTKRAFLN 119 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AES+ADLI + ++ R+++ + G S + +D L +R +EA LDF E Sbjct: 120 NKLDLAQAESVADLIDASSKSAARMALRSLKGAFSQHIHELVDDLITLRMLVEATLDFPE 179 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E D+ + + + L+ + + ++ + G I+R G +V++G N GKSSL NALA Sbjct: 180 E-DIDFLEAADARGKLQALQGRLKTVLASAEQGAILREGMNVVLVGAPNVGKSSLLNALA 238 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 D+AIVTDI GTTRD + + L+G V I DTAG+RETDD+VE+ GI+R+ V AD Sbjct: 239 GDDIAIVTDIAGTTRDTVREQITLDGVPVHIIDTAGLRETDDVVEQIGIERSRKAVSEAD 298 Query: 301 LILLL----KEINSKKEI---SFPKNIDFIFIGTKSDLYS-TYTEEYDHL---------- 342 + L+L + +N+K + S P + I I K+DL D L Sbjct: 299 VALILIDPREGVNAKTQAILNSLPAGLKKIEIHNKADLTGEPVAVRSDGLAQTGADTVIS 358 Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402 +S+ TG GL+ L + + + + + + + RHL L + LE A+L + + + Sbjct: 359 LSAKTGAGLDLLKHALLQEVGWQGESESLFL-ARSRHLNALHKAEAELENAALCDNNQ-I 416 Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++ AE+LRLA + +ITG + LL +IFS+FCIGK Sbjct: 417 ELFAEHLRLAQNACSEITGEFTADDLLGVIFSRFCIGK 454 >gi|304388556|ref|ZP_07370656.1| tRNA modification GTPase TrmE [Neisseria meningitidis ATCC 13091] gi|304337453|gb|EFM03622.1| tRNA modification GTPase TrmE [Neisseria meningitidis ATCC 13091] Length = 448 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 167/456 (36%), Positives = 255/456 (55%), Gaps = 24/456 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+ TI AV+T + + +IR+SG + + E +C K P PR A+ F DG+ Sbjct: 1 MSDNVPTIAAVATASGRGGVGVIRISGKNLLPMAEALCGKT-PKPRVATYADFTDADGQA 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D GLL+ F +P SFTGED E HGG V++ +L ++ RLA PGEF++RAF N Sbjct: 60 IDSGLLLFFAAPASFTGEDVIELQGHGGPVVMDMLLNRCLEL-GARLAEPGEFTKRAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE +ADLI + + RL++ + G+ S ++ L +R +EA LDF E Sbjct: 119 DKLDLAQAEGVADLIDASSRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEATLDFPE 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E D+ + + + L+ + ++ + G I+R G +V++G N GKSSL NALA Sbjct: 179 E-DIDFLEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 +VAIVTDI GTTRD + + ++G V I DTAG+RETDD+VE+ GI+R+ V AD Sbjct: 238 GDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEAD 297 Query: 301 LILLLKE----INSKKEI---SFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347 + L+L + +N K + P + I I +KSDL++ + +S+ T Sbjct: 298 VALVLVDPREGLNEKTRAILDTLPSELKRIEIHSKSDLHAHAAGGFGTGAETVIALSAKT 357 Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG---LDI 404 G GL+ L + + + + + RH+ L L +A+L CG +++ Sbjct: 358 GNGLDALKRTLLREAGWQGESEGLFL-ARTRHVNALKAAQEELSLAAL----CGNHQIEL 412 Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +AE+LRLA V+ G+ITG + LL +IFS+FCIGK Sbjct: 413 LAEHLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448 >gi|114049515|ref|YP_740065.1| tRNA modification GTPase TrmE [Shewanella sp. MR-7] gi|123030127|sp|Q0HPE7|MNME_SHESR RecName: Full=tRNA modification GTPase mnmE gi|113890957|gb|ABI45008.1| tRNA modification GTPase trmE [Shewanella sp. MR-7] Length = 453 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 165/453 (36%), Positives = 255/453 (56%), Gaps = 21/453 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + IIR+SG V + P PR A F G+++D+G+ Sbjct: 4 DTIVAQATAPGRGGVGIIRISGDKATDVAMAVLGHL-PKPRYADYCDFKNASGQVIDQGI 62 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + F P SFTGED E HGG V++ +++ + ++ +R+A PGEFS +AF N K+DL Sbjct: 63 ALYFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVLEVEGIRIAKPGEFSEQAFMNDKLDL 122 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E + +++ + GE S + +D++TH+R ++EA +DF +EE V Sbjct: 123 TQAEAIADLIDATSEQAAKSALQSLQGEFSKEVHELVDQVTHLRLYVEAAIDFPDEE-VD 181 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S ++ N + + + +S + K G IIR G K+VI G NAGKSSL NALA K+ A Sbjct: 182 FLSDGKIANALYKIIDKLSVVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKESA 241 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVT+I GTTRDVL + L+G + I DTAG+R+T D VE+ GI+R + E+ +AD +L + Sbjct: 242 IVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTTDTVEQIGIERAWNEINSADRVLFM 301 Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYS---TYTEEYD---HLISSFTG 348 + + + P N+ + K+DL TEE + IS+ TG Sbjct: 302 VDGTTTDAVDPHDIWPDFINRLPANLGVTVVRNKADLTGENLAMTEEKGYSVYRISAKTG 361 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407 G+EEL +KS++ + L + +RHL L +L++ E +++AE Sbjct: 362 LGVEELKQHLKSLMGYQ-SNLEGGFIARRRHLEALDIAASHLQLGKEQLEIYLAGELLAE 420 Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LR+A ++L +ITG + LL IFS FCIGK Sbjct: 421 ELRMAQLALSEITGRFTSDDLLGKIFSSFCIGK 453 >gi|330831723|ref|YP_004394675.1| tRNA modification GTPase mnmE [Aeromonas veronii B565] gi|328806859|gb|AEB52058.1| tRNA modification GTPase mnmE [Aeromonas veronii B565] Length = 453 Score = 266 bits (681), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 169/453 (37%), Positives = 251/453 (55%), Gaps = 21/453 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + I+R+SGP+ QV + K P R A F G++LD+G+ Sbjct: 4 DTIVAQATAPGRGGVGIVRVSGPAAEQVAGIVLGKL-PRVRYAEYLPFRDEQGQVLDQGI 62 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 ++F +P SFTGED E HGG +++ ++ + K+ +R A PGEFS RAF N K+DL Sbjct: 63 ALLFKAPNSFTGEDVLELQGHGGPVIMDMLIRRILKIDGIRPARPGEFSERAFINDKLDL 122 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E R +M + G+ SS Q ++ L +R ++EA +DF +EE + Sbjct: 123 AQAEAIADLIEASSEQAARSAMHSLQGQFSSKIQQLVESLIRLRIYVEAAIDFPDEE-ID 181 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S +V D+ + +++ + K G ++R G K+VI G NAGKSSL NALA ++ A Sbjct: 182 FLSDGKVAGDLYAIMSELDDVRGEAKQGALLREGMKVVIAGRPNAGKSSLLNALAGRESA 241 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVT+I GTTRDVL + L+G + I DTAG+R+T D VE+ GI+R + E+E AD +L + Sbjct: 242 IVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTQDKVEQIGIERAWAEIEQADRVLFM 301 Query: 306 -----------KEINSKKEISFPKNIDFIFIGTKSDLYS---TYTEEYDHL---ISSFTG 348 +EI + PKNI I K+DL ++E H IS+ T Sbjct: 302 VDGTTTDAVDPREIWPEFVDRLPKNIGLTVIRNKADLTGEDLAPSQELGHAVYRISAKTE 361 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407 GL L +K+ + + + +RHL L + L +A E +++AE Sbjct: 362 LGLPALREHLKACMGFQ-GNTEGGFMARRRHLDALERAAERLLVAKEQLEVFVAGELVAE 420 Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LRLA SL +ITG + LL IFS FCIGK Sbjct: 421 ELRLAQESLSEITGEFSSDDLLGRIFSSFCIGK 453 >gi|325983265|ref|YP_004295667.1| tRNA modification GTPase TrmE [Nitrosomonas sp. AL212] gi|325532784|gb|ADZ27505.1| tRNA modification GTPase TrmE [Nitrosomonas sp. AL212] Length = 464 Score = 266 bits (681), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 168/448 (37%), Positives = 254/448 (56%), Gaps = 18/448 (4%) Query: 8 IFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLI 67 I A++T I +IR+SG + ++ + I K P PR ASL F +G+I+D+G+++ Sbjct: 20 IAAIATPPGRGGIGVIRISGNNLAKLAQVILGKL-PKPRHASLGKFLDTEGQIIDQGIVL 78 Query: 68 VFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLE 127 FP P S+TGED E H HGG AV+N +L+ RLA PGEF+ RA+ N KIDL++ Sbjct: 79 YFPGPHSYTGEDVLELHGHGGPAVINLLLKSCLSA-GARLAQPGEFTLRAYLNNKIDLIQ 137 Query: 128 AESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNF 187 AES+A LI + T+ R ++ + G S+ + L +R IEA LDF E+E + N Sbjct: 138 AESVAALIEASTQEAARCAVNSLQGHFSARIDVLVGLLITLRMLIEATLDFPEDE-IDNL 196 Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247 + ++ + + + +S + G +++ G +IV+ G N GKSSL N L ++D AIV Sbjct: 197 KTLQIREKLDHIVAQLEQTLSGARQGNLLQEGIRIVLAGAPNVGKSSLLNQLVEEDAAIV 256 Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307 T+IPGTTRD + + L G + I DTAG+RET DIVE++GI+RT ++ A+L+L L + Sbjct: 257 TEIPGTTRDTIHRTITLGGMPIHIIDTAGLRETGDIVEQKGIERTLAAIKCANLVLRLLD 316 Query: 308 INSKKEIS-------FPKNIDFIFIGTKSDLYS----TYTEEYDHLI--SSFTGEGLEEL 354 + + + P + I + K DL + +E++ +I S+ TG G+E L Sbjct: 317 SSQHQPAAPDPIKQYIPDDKPQITVFNKIDLRNESPKMEADEHNSIIHLSAKTGAGIELL 376 Query: 355 INKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMAS-LNEKDCGLDIIAENLRLA 412 KI + +F I + +RHL L+Q +L+ A E + L++IAE LRLA Sbjct: 377 RQKILHLAGWQFNHAGEGIFMARQRHLEALTQASAHLQNAQEYAENEYQLELIAEELRLA 436 Query: 413 SVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +L ITG + LL IFS FCIGK Sbjct: 437 QTALSAITGQFTADDLLGEIFSHFCIGK 464 >gi|118602976|ref|YP_904191.1| tRNA modification GTPase TrmE [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|166234818|sp|A1AXR3|MNME_RUTMC RecName: Full=tRNA modification GTPase mnmE gi|118567915|gb|ABL02720.1| tRNA modification GTPase trmE [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 447 Score = 266 bits (681), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 172/458 (37%), Positives = 264/458 (57%), Gaps = 29/458 (6%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK---KPFPRKASLRYFFGLD 57 MN + TI A+++G I ++R+SGP +C+ I KK P PR A FF + Sbjct: 1 MNSSETTICALASGVCKGGIGVVRVSGP----LCKVIAKKMLGFVPKPRYAHYGLFFDQE 56 Query: 58 GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 +DKG+ + FP P SFTGED EF HGG++V+ +LE + M + A+PGEFS+RA Sbjct: 57 NDEIDKGIALFFPKPHSFTGEDILEFQGHGGMSVMCCLLESVISM-GAKPADPGEFSKRA 115 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NGK++L++AE++AD+I++ ++ + + +SGE S+ + +R F+EA +D Sbjct: 116 FLNGKMNLVQAEAVADMINANSKRASKSAFRSLSGEFSNQVNALTKSIVELRVFVEATID 175 Query: 178 FSEEE-DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 FS+EE D F ++V +K + + + G I+R G +VI G NAGKSSL Sbjct: 176 FSDEEIDFLQF--EQVKLKAKGIKQAVETILKSATQGVILREGLNVVIAGKPNAGKSSLL 233 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 NAL ++ AIVTDI GTTRDVL + + G + I DTAG+ ++DD +EKEGIKR E+ Sbjct: 234 NALTQESSAIVTDIAGTTRDVLKETICVNGMPLNIIDTAGLHDSDDKIEKEGIKRAHFEI 293 Query: 297 ENADLILLLKEI-NSKKEIS-FPKNID---FIFIGTKSDLYSTYTEE------YDHLISS 345 E AD++L++ + + K + S PKNID + I K DL S ++ IS+ Sbjct: 294 ERADVVLMVFDAQDDKPDFSILPKNIDDQPLLLIKNKVDLISGAVKKEMINNIVQLSISA 353 Query: 346 FTGEGLEELINKIKSILSNKFKKLPFS---IPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402 +G+E L ++ I + FS + S KRH+ L +++ ++ A + ++ + Sbjct: 354 KHSKGMELLRKELSDIAGLE----DFSEGVVLSRKRHIIALEESLASIDNAIMQLENGVV 409 Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE+LR A +G ITG + LL IFS FCIGK Sbjct: 410 ELMAEDLRFAGQFMGSITGEFSSDDLLGEIFSSFCIGK 447 >gi|254671681|emb|CBA09438.1| putative tRNA modification GTPase [Neisseria meningitidis alpha153] Length = 448 Score = 266 bits (681), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 167/456 (36%), Positives = 255/456 (55%), Gaps = 24/456 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+ TI AV+T + + +IR+SG + + E +C K P PR A+ F DG+ Sbjct: 1 MSDNVPTIAAVATASGRGGVGVIRISGKNLLPMAEALCGKT-PKPRVATYADFTDADGQA 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D GLL+ F +P SFTGED E HGG V++ +L ++ RLA PGEF++RAF N Sbjct: 60 IDSGLLLFFAAPASFTGEDVIELQGHGGPVVMDMLLNRCLEL-GARLAEPGEFTKRAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE +ADLI + + RL++ + G+ S ++ L +R +EA LDF E Sbjct: 119 DKLDLAQAEGVADLIDASSRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEATLDFPE 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E D+ + + + L+ + ++ + G I+R G +V++G N GKSSL NALA Sbjct: 179 E-DIDFLEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 +VAIVTDI GTTRD + + ++G V I DTAG+RETDD+VE+ GI+R+ V AD Sbjct: 238 GDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEAD 297 Query: 301 LILLLKE----INSKKEI---SFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347 + L+L + +N K + P + I I +KSDL++ + +S+ T Sbjct: 298 VALVLVDPREGLNEKTRAILDALPPELKRIEIHSKSDLHAHAAGGFGTGAETVIALSAKT 357 Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG---LDI 404 G+GL+ L + + + + + RH+ L L +A+L CG +++ Sbjct: 358 GDGLDALKRTLLREAGWQGESEGLFL-ARTRHVNALKAAQEELSLAAL----CGNHQIEL 412 Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 AE+LRLA V+ G+ITG + LL +IFS+FCIGK Sbjct: 413 FAEHLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448 >gi|205829165|sp|A8ACL8|MNME_CITK8 RecName: Full=tRNA modification GTPase mnmE Length = 454 Score = 266 bits (681), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 164/459 (35%), Positives = 255/459 (55%), Gaps = 24/459 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+H +TI A +T + I+R+SG +V E + K P PR A F DG Sbjct: 1 MSH-NDTIVAQATPPGRGGVGILRISGLKAREVAEAVLGKL-PKPRYADYLPFKDADGTA 58 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG +++ +L+ + +P LR+A PGEFS RAF N Sbjct: 59 LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIARPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + +E R ++ + G S+ ++ LTH+R ++EA +DF + Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + S ++ + + D+ + ++ + G ++R G K+VI G NAGKSSL NALA Sbjct: 179 EE-IDFLSDGKIEAQLNGVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + ++G + I DTAG+R+ D VE+ GI+R + E+E AD Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQAD 297 Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTY---TEEYDH---LI 343 +L + + + + P + + K+D+ +E H + Sbjct: 298 RVLFMVDGTTTDAVDPAEIWPDFIARLPAKLPITVVRNKADITGETLGISEVNGHSLVRL 357 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401 S+ TGEG++ L N +K + + + +RHL L++ +L+ + L G Sbjct: 358 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALAEAAEHLQQGKSQLLGAWAG 416 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LRLA +L +ITG + LL IFS FCIGK Sbjct: 417 -ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454 >gi|161170269|gb|ABX59239.1| predicted GTPase [uncultured marine bacterium EB000_55B11] gi|297183798|gb|ADI19921.1| hypothetical protein [uncultured marine bacterium EB000_55B11] Length = 432 Score = 266 bits (681), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 169/445 (37%), Positives = 251/445 (56%), Gaps = 29/445 (6%) Query: 8 IFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLI 67 IFA+++ + +S+IR+SG + E I +K K LR + + ++D+ L++ Sbjct: 5 IFALTSAKGRAGVSVIRISGDNSITSVEKILRKNLSSNNKC-LRKIYDSNNSVIDEVLIL 63 Query: 68 VFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLE 127 F SFTG+++ E H HG IAVV+ IL L+ + N R+A PGEF+R+A ENG +DL++ Sbjct: 64 TFKKSASFTGDETVEIHCHGSIAVVSHILRTLSSLENFRIAEPGEFTRKALENGNLDLIQ 123 Query: 128 AESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNF 187 E LADLI SETE QRRL++ M G LS W L S IEA +DF+ +ED+ Sbjct: 124 VEGLADLIESETEAQRRLAVRSMDGALSKKVQIWRKDLIRAVSLIEATIDFA-DEDIPTD 182 Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247 + EVL+ I + +I S I E IR G+++ I+G N GKS+L NALA +D AI Sbjct: 183 VTPEVLDLINKTQIEIKSEIDGSFAAERIREGFEVAIVGPPNIGKSTLLNALAGRDAAIT 242 Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307 +D+ GTTRDV+ + +D+ G+ V + DTAG+RET D VEK G++ +NAD+ + + Sbjct: 243 SDVAGTTRDVIEVKMDINGFAVTLLDTAGLRETTDKVEKIGVELAKTRAKNADIRVFITH 302 Query: 308 INSKKEISF-PKNIDFIFIGTKSDLYSTYTEEYDHL-ISSFTGEGLEELINKIKSILSNK 365 + E+ P+ D I IG KSDL ++ D L IS +GEGL+ L+ I IL + Sbjct: 303 DGTVNELKLKPELNDIIVIG-KSDLL----DKTDILSISGKSGEGLDSLLKTISDILEDL 357 Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASV----------S 415 + + +RH + + +YL D G ++ ++L L+ + Sbjct: 358 C--VGAQTATRERHRVAMVKAQKYL--------DEGKALMVDSLELSEFASSEFHQGIQT 407 Query: 416 LGKITGCVDVEQLLDIIFSKFCIGK 440 L + G V VE LLD IFS FC+GK Sbjct: 408 LSSLIGSVGVEDLLDEIFSSFCLGK 432 >gi|206578096|ref|YP_002241307.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae 342] gi|288937945|ref|YP_003442004.1| tRNA modification GTPase TrmE [Klebsiella variicola At-22] gi|290511686|ref|ZP_06551054.1| tRNA modification GTPase TrmE [Klebsiella sp. 1_1_55] gi|254811487|sp|B5XZP4|MNME_KLEP3 RecName: Full=tRNA modification GTPase mnmE gi|206567154|gb|ACI08930.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae 342] gi|288892654|gb|ADC60972.1| tRNA modification GTPase TrmE [Klebsiella variicola At-22] gi|289775476|gb|EFD83476.1| tRNA modification GTPase TrmE [Klebsiella sp. 1_1_55] Length = 454 Score = 266 bits (681), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 164/459 (35%), Positives = 254/459 (55%), Gaps = 24/459 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+H +TI A +T + I+R+SG V + + K P PR A F +DG Sbjct: 1 MSH-NDTIVAQATPPGRGGVGILRISGLKARDVAQAVLGKL-PKPRYADYLPFNDVDGTP 58 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG +++ +L+ + +P +R+A PGEFS RAF N Sbjct: 59 LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + +E R ++ + G S+ ++ LTH+R ++EA +DF + Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + S ++ + + D+ + ++ + G ++R G K+VI G NAGKSSL NALA Sbjct: 179 EE-IDFLSDGKIEAQLNGVMADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + ++G + I DTAG+R+ D VE+ GI+R + E+E AD Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQAD 297 Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYS---TYTEEYDH---LI 343 +L + + + + P + + K+D+ +E H + Sbjct: 298 RVLFMVDGTTTSAVDPAEIWPDFIERLPAKLPITVVRNKADVTGEALGLSEVNGHSLIRL 357 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401 S+ TGEG+E L N +K + + + +RHL L + +L+ A L G Sbjct: 358 SARTGEGVEVLRNHLKQSMGFD-TSMEGGFLARRRHLQALEEAANHLQQGKAQLLGAWAG 416 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LRLA +L +ITG + LL IFS FCIGK Sbjct: 417 -ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454 >gi|126463651|ref|YP_001044765.1| tRNA modification GTPase TrmE [Rhodobacter sphaeroides ATCC 17029] gi|205415802|sp|A3PNS7|MNME_RHOS1 RecName: Full=tRNA modification GTPase mnmE gi|126105315|gb|ABN77993.1| tRNA modification GTPase trmE [Rhodobacter sphaeroides ATCC 17029] Length = 428 Score = 266 bits (681), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 163/438 (37%), Positives = 248/438 (56%), Gaps = 14/438 (3%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI+A+++ + ++++RLSGP + + P R A+LR D +LD+ L Sbjct: 2 DTIYALASARGKAGVAVLRLSGPRSHEAVQAFGVLLPPL-RHAALRRLTWND-EVLDEAL 59 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 +++F + SFTGE SAE H+HG A V+ +L L+ +P LR A GEF+RRA ENG++DL Sbjct: 60 VLLFGAGASFTGETSAELHLHGSPAAVSSVLRVLSGLPGLRAAEAGEFTRRALENGRLDL 119 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 + E LADLI +ETE QRR +M SG + +W L + +EA +DF+ +EDV Sbjct: 120 AQVEGLADLIDAETEAQRRQAMRVFSGAIGERAERWRADLIRAAALLEATIDFA-DEDVP 178 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 + EVL I L D+ + ++ E IR+G+++ I+G NAGKS+L NALA+++ A Sbjct: 179 VDVTPEVLTLIDGLLADLRREVDGSRIAERIRDGFEVAIVGAPNAGKSTLLNALARREAA 238 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL-ILL 304 I ++I GTTRDV+ + +DL+G V DTAG+R+T D+VE GI+R + ADL + L Sbjct: 239 ITSEIAGTTRDVIEVRMDLDGLPVTFLDTAGLRDTSDLVESLGIERAVTRAKAADLRVFL 298 Query: 305 LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364 L + I+ D + + K+DL + +S TGEG+ EL+ I L Sbjct: 299 LDDSGPLPGITV--QADDLVVQGKADLRPGHGLR----LSGRTGEGVPELVAAIGERLLG 352 Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDIIAENLRLASVSLGKITGC 422 + + +RH + + + +E A L ++ A++LR A SL + G Sbjct: 353 RTAG--AGSLTRERHRLAIERAIGAMESVRAELLRGQQHTELAADDLRRAIRSLDSLVGR 410 Query: 423 VDVEQLLDIIFSKFCIGK 440 VDVE LL IF+ FCIGK Sbjct: 411 VDVESLLGEIFASFCIGK 428 >gi|45550813|ref|NP_651251.3| CG18528 [Drosophila melanogaster] gi|17946252|gb|AAL49166.1| RE57978p [Drosophila melanogaster] gi|17946567|gb|AAL49314.1| RH13838p [Drosophila melanogaster] gi|45446626|gb|AAF56288.3| CG18528 [Drosophila melanogaster] Length = 493 Score = 266 bits (681), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 168/478 (35%), Positives = 261/478 (54%), Gaps = 52/478 (10%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK--PFPRKASLRYFFGLDGR-ILDK 63 TI+++S+G + +S+IR+SGP + I K+ P R+A L+ F+ + ++D+ Sbjct: 24 TIYSLSSGHVKCGVSVIRVSGPQTKKALRAIVANKEYEPKARQAYLKSFYHPASKEMIDR 83 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 GLL+ FP P SFTGEDS EF VHG +AV+ +L+ L K+ LR A PGEF++RAF GK+ Sbjct: 84 GLLLWFPGPASFTGEDSCEFQVHGSLAVIAAMLDALGKVDGLRPAEPGEFTKRAFFGGKL 143 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL E E LADLI +ETE QR+ ++ +G L+ LY W +L + +EA +DF+EEE Sbjct: 144 DLTEVEGLADLIHAETEAQRKQALLQSTGALARLYDNWRRRLIRCAAHLEAYIDFAEEEQ 203 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 ++ ++ ++ +K +I H+S + GE++R+G + VI+G N GKSSL N L ++ Sbjct: 204 IEGGIILQLGKELKAVKREIREHLSDQRQGELLRDGVRTVIIGAPNVGKSSLLNLLCQRS 263 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEVENADLI 302 V+IVTD GTTRD++ + GY V SDTAG+R T D +E+EG++R + +DLI Sbjct: 264 VSIVTDQAGTTRDIIETMHNFGGYPVVFSDTAGLRRYTTDSIEQEGMQRAKNCLVQSDLI 323 Query: 303 LLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSI- 361 LLL E + +++ + + +Y E D + +G+ L+ + NK ++ Sbjct: 324 LLLAEAKNIAQLTHDDAV--------APFVDSYLGELDIPLDMCSGKRLQLVANKTDTLT 375 Query: 362 ---------LSN-------KFKKLPFSIPSHKRHLYHL-----------------SQTVR 388 LSN K K+P + S ++ L L Q R Sbjct: 376 DEEHQQLDKLSNVLAISCHKPDKMPVFLGSLEKQLQELCGEPRAENPRITNTRYRQQLER 435 Query: 389 YLEMASLNEKDCGLD------IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +E + +D D I A LR + + +ITG + E +LD++F FCIGK Sbjct: 436 CIENIDIFLRDYRPDVYPDMAIAASKLRNSVRCIERITGHISCEDILDVVFKDFCIGK 493 >gi|195389280|ref|XP_002053305.1| GJ23413 [Drosophila virilis] gi|194151391|gb|EDW66825.1| GJ23413 [Drosophila virilis] Length = 494 Score = 266 bits (680), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 161/482 (33%), Positives = 264/482 (54%), Gaps = 60/482 (12%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICK--KKKPFPRKASLRYFFGLDGR-ILDK 63 TI+++S+G + +S+IR+SGP Q I + +P R+A L+ F+ + I+D+ Sbjct: 25 TIYSLSSGHVKCGVSVIRVSGPQTKQALRAIVDNGEYEPKQRQAYLKSFYHPTSKEIIDR 84 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 GLL+ FP P SFTGED+ EF VHG +AV+ +L+ L ++P LR A PGEF++RAF GK+ Sbjct: 85 GLLLWFPGPASFTGEDACEFQVHGSLAVIAAMLDALGQLPGLRPAQPGEFTKRAFFGGKL 144 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL E E LADLI +ETE QR+ ++ +G L LY W +L + +EA +DF+EEE Sbjct: 145 DLTEVEGLADLIHAETEAQRKQALLQSTGALGRLYDSWRKRLIRCAAHLEAYIDFAEEEQ 204 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 ++ ++ ++ +K +I +H++ + GE++R+G + VI+G N GKSSL N L ++ Sbjct: 205 IEGGVIVKLTRELNAVKQEIRAHLNDQRQGELLRDGVRTVIIGAPNVGKSSLLNLLCQRA 264 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEVENADLI 302 V+IVT+ GTTRD++ + GY V +DTAG+R+ T D +E EG+ R + ++DLI Sbjct: 265 VSIVTEQAGTTRDIIETMHNFGGYPVVFADTAGLRKHTTDTIEVEGMARAKQCLASSDLI 324 Query: 303 LLLKEINSKKEI----SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKI 358 LLL + + +++ + +ID Y EE D +G+ L+ + NK Sbjct: 325 LLLTDARALRKVENNEALTGHID------------NYLEELDIPPELCSGKRLQLVANKT 372 Query: 359 KSILSNKFKKLP------------------------------FSIP-------SHKRHLY 381 ++ + + ++L +P +H R+ Sbjct: 373 DTLSAEEVQRLSKLDNVLALSCHKQDNLPEFLGSLQQLLQQLCGVPQAEHPRITHTRYRQ 432 Query: 382 HLSQTVRYLEMASLNEKD---CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCI 438 L + + ++E+ + K + I A+ LR + + +ITG V E +LD++F FCI Sbjct: 433 QLERCIDHIEIFLRDYKPDVYPDMAIAAQQLRKSVRCIERITGHVSCEDILDVVFKDFCI 492 Query: 439 GK 440 GK Sbjct: 493 GK 494 >gi|326562321|gb|EGE12647.1| tRNA modification GTPase TrmE [Moraxella catarrhalis 103P14B1] gi|326575525|gb|EGE25450.1| tRNA modification GTPase TrmE [Moraxella catarrhalis 101P30B1] Length = 466 Score = 266 bits (680), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 170/464 (36%), Positives = 264/464 (56%), Gaps = 37/464 (7%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66 TI A+++ + IIRLSG + +++ + ++ PR A F+G +G ++D+G++ Sbjct: 10 TIAAIASPIGQGGVGIIRLSGKNAYRIGCLMTRRSNLIPRMAYFGGFYGQEG-VIDEGVI 68 Query: 67 IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126 I F +P SFTGED E HGG+ + N +L + ++ R A GEFS RAFEN KIDL+ Sbjct: 69 IYFKAPHSFTGEDVVELQGHGGMVLQNMLLARVFEL-GARQAAAGEFSYRAFENDKIDLV 127 Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186 +AE+++D IS+ + Q ++ ++GE S + +DKL H+R ++EA +DF EEEDV Sbjct: 128 QAEAISDAISATSVAQATSAIRSLTGEFSQKINELLDKLVHLRLYVEASIDFPEEEDVDF 187 Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246 S + N + + + I ++ K G+++R+G +V+ G NAGKSSL N L+ + AI Sbjct: 188 LSDGIIENKLTEILSGIDRILATAKQGQLLRDGVHVVLAGKPNAGKSSLLNRLSGTERAI 247 Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306 VT+I GTTRD L L L G V ++DTAG+R+TDD VEK GIKR F + AD+++++ Sbjct: 248 VTEIAGTTRDTLEETLILNGLTVHLTDTAGLRKTDDHVEKIGIKRAFDAIHQADVLMMVY 307 Query: 307 EINSKKE-ISFPKNI---------------DFIFIGTKSDL--------YSTYTEEYDHL 342 ++ ++ + ++ + I + KSDL S T+ L Sbjct: 308 DVTTETDPLALADQLFCEDVTEDVGDIIRQKLILVANKSDLLVSKPVLQVSCETKSAPKL 367 Query: 343 --ISSFTGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLN 396 +S TGEGL+ELI IL+ K F S+ + RHL L++ Y A L Sbjct: 368 VYVSCETGEGLDELIE----ILTQKVGFHPPENSLIARTRHLDALNRAKGYAIEAYEQLT 423 Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G +++AE+LR + +LG+ITG + ++LL IFS FCIGK Sbjct: 424 IYHAG-ELVAESLRQSQQALGEITGQMSADELLGKIFSSFCIGK 466 >gi|260580092|ref|ZP_05847922.1| tRNA modification GTPase TrmE [Haemophilus influenzae RdAW] gi|205371770|sp|P43730|MNME_HAEIN RecName: Full=tRNA modification GTPase mnmE gi|260093376|gb|EEW77309.1| tRNA modification GTPase TrmE [Haemophilus influenzae RdAW] Length = 452 Score = 266 bits (680), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 167/455 (36%), Positives = 253/455 (55%), Gaps = 23/455 (5%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64 KETI A +T I I+R+SGP +V + I K P PR A F DG ILD+G Sbjct: 2 KETIVAQATAPGRGGIGILRVSGPLATKVAQAILGKC-PKPRMADYLPFKDADGTILDQG 60 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 + + F SP SFTGED E HGG V++ +L+ + ++ +RLA PGEFS +AF N K+D Sbjct: 61 IALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQIDGIRLARPGEFSEQAFLNDKLD 120 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ADLI + +E R +++ + GE S + +D + ++R+++EA +DF +EE + Sbjct: 121 LAQAEAIADLIDATSEQAVRSALKSLQGEFSKKVNELVDSVIYLRTYVEASIDFPDEE-I 179 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + ++ ++ + N + S+ K G I+R G K+VI G NAGKSSL NALA ++ Sbjct: 180 DFLADGKIEANLRGIINQLEDVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREA 239 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIVTDI GTTRDVL + ++G + I DTAG+R+ D VE+ GI R + E+E AD I+L Sbjct: 240 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAIDEVERIGISRAWTEIEQADRIIL 299 Query: 305 -----------LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347 L ++ S+ P + + K DL E + +S+ T Sbjct: 300 MLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKIDLNGEQASESEQGGYQMISLSAQT 359 Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDII 405 +G++ L +K + + + + +RHL L + +L+ + L E G +++ Sbjct: 360 HDGVQLLREHLKQAMGFQ-TGMEGGFLARRRHLDALDKAAEHLQIGLVQLTEFHAG-ELL 417 Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 AE LRL L +ITG + LL IFS FCIGK Sbjct: 418 AEELRLVQSYLSEITGQFTSDDLLGNIFSSFCIGK 452 >gi|221640727|ref|YP_002526989.1| tRNA modification GTPase TrmE [Rhodobacter sphaeroides KD131] gi|221161508|gb|ACM02488.1| tRNA modification GTPase trmE [Rhodobacter sphaeroides KD131] Length = 428 Score = 266 bits (680), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 163/438 (37%), Positives = 247/438 (56%), Gaps = 14/438 (3%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI+A+++ + ++++RLSGP + + P R A+LR D +LD+ L Sbjct: 2 DTIYALASARGKAGVAVLRLSGPRSHEAVQAFGVPLPPL-RHAALRRLTWND-EVLDEAL 59 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 +++F + SFTGE SAE H+HG A V+ +L L+ +P LR A GEF+RRA ENG++DL Sbjct: 60 VLLFGAGASFTGETSAELHLHGSPAAVSSVLRVLSGLPGLRAAEAGEFTRRALENGRLDL 119 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 + E LADLI +ETE QRR +M SG + +W L + +EA +DF+ +EDV Sbjct: 120 AQVEGLADLIDAETEAQRRQAMRVFSGAIGERAERWRADLIRAAALLEATIDFA-DEDVP 178 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 + EVL I L D+ + ++ E IR+G+++ I+G NAGKS+L NALA+++ A Sbjct: 179 VDVTPEVLTLIDGLLADLRREVDGSRIAERIRDGFEVAIVGAPNAGKSTLLNALARREAA 238 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL-ILL 304 I ++I GTTRDV+ + +DL+G V DTAG+R+T D+VE GI+R + ADL + L Sbjct: 239 ITSEIAGTTRDVIEVRMDLDGLPVTFLDTAGLRDTSDLVESLGIERAVTRAKAADLRVFL 298 Query: 305 LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364 L + I+ D + + K+DL +S TGEG+ EL+ I L Sbjct: 299 LDDSGPLHGITV--QADDLVVQGKADLRPGQGLR----LSGRTGEGVPELVAAIGERLLG 352 Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDIIAENLRLASVSLGKITGC 422 + + +RH + + + +E A L ++ A++LR A SL + G Sbjct: 353 RIAG--AGSLTRERHRLAIERAIGAMESVRAELLRGQQHTELAADDLRRAIRSLDSLVGR 410 Query: 423 VDVEQLLDIIFSKFCIGK 440 VDVE LL IF+ FCIGK Sbjct: 411 VDVESLLGEIFASFCIGK 428 >gi|254673772|emb|CBA09462.1| putative tRNA modification GTPase [Neisseria meningitidis alpha275] Length = 448 Score = 266 bits (680), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 167/456 (36%), Positives = 255/456 (55%), Gaps = 24/456 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+ TI AV+T + + +IR+SG + + E +C K P PR A+ F DG+ Sbjct: 1 MSDNVPTIAAVATASGRGGVGVIRISGKNLLPMAEALCGKT-PKPRVATYADFTDADGQA 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D GLL+ F +P SFTGED E HGG V++ +L ++ RLA PGEF++RAF N Sbjct: 60 IDSGLLLFFAAPASFTGEDVIELQGHGGPVVMDMLLNRCLEL-GARLAEPGEFTKRAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE +ADLI + + RL++ + G+ S ++ L +R +EA LDF E Sbjct: 119 DKLDLAQAEGVADLIDASSRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEATLDFPE 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E D+ + + + L+ + ++ + G I+R G +V++G N GKSSL NALA Sbjct: 179 E-DIDFLEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 +VAIVTDI GTTRD + + ++G V I DTAG+RETDD+VE+ GI+R+ V AD Sbjct: 238 GDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEAD 297 Query: 301 LILLLKE----INSKKEI---SFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347 + L+L + +N K + P + I I +KSDL++ + +S+ T Sbjct: 298 VALVLVDPREGLNEKTRAILDALPPELKRIEIHSKSDLHAHAAGGFGTGAETVIALSAKT 357 Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG---LDI 404 G+GL+ L + + + + + RH+ L L +A+L CG +++ Sbjct: 358 GDGLDALKRTLLREAGWQGEGEGLFL-ARTRHVNALKAAQEELSLAAL----CGNHQIEL 412 Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 AE+LRLA V+ G+ITG + LL +IFS+FCIGK Sbjct: 413 FAEHLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448 >gi|121635645|ref|YP_975890.1| tRNA modification GTPase TrmE [Neisseria meningitidis FAM18] gi|205415783|sp|A1KW66|MNME_NEIMF RecName: Full=tRNA modification GTPase mnmE gi|120867351|emb|CAM11122.1| probable thiophene and furan oxidation protein [Neisseria meningitidis FAM18] gi|325131396|gb|EGC54105.1| tRNA modification GTPase TrmE [Neisseria meningitidis M6190] gi|325135580|gb|EGC58198.1| tRNA modification GTPase TrmE [Neisseria meningitidis M0579] gi|325137477|gb|EGC60063.1| tRNA modification GTPase TrmE [Neisseria meningitidis ES14902] gi|325141474|gb|EGC63948.1| tRNA modification GTPase TrmE [Neisseria meningitidis 961-5945] gi|325204937|gb|ADZ00391.1| tRNA modification GTPase TrmE [Neisseria meningitidis M01-240355] gi|325207354|gb|ADZ02806.1| tRNA modification GTPase TrmE [Neisseria meningitidis NZ-05/33] Length = 448 Score = 266 bits (680), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 167/456 (36%), Positives = 254/456 (55%), Gaps = 24/456 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+ TI AV+T + +IR+SG + + E +C K P PR A+ F DG+ Sbjct: 1 MSDNVPTIAAVATAPGRGGVGVIRISGKNLLPMAEALCGKT-PKPRVATYADFTDADGQA 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D GLL+ F +P SFTGED E HGG V++ +L ++ RLA PGEF++RAF N Sbjct: 60 IDSGLLLFFAAPASFTGEDVIELQGHGGPVVMDMLLNRCLEL-GARLAEPGEFTKRAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE +ADLI + + RL++ + G+ S ++ L +R +EA LDF E Sbjct: 119 DKLDLAQAEGVADLIDASSRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEATLDFPE 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E D+ + + + L+ + ++ + G I+R G +V++G N GKSSL NALA Sbjct: 179 E-DIDFLEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 +VAIVTDI GTTRD + + ++G V I DTAG+RETDD+VE+ GI+R+ V AD Sbjct: 238 GDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEAD 297 Query: 301 LILLLKE----INSKKEI---SFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347 + L+L + +N K + P + I I +KSDL++ + +S+ T Sbjct: 298 VALVLVDPREGVNDKTRAILDALPPELKRIEIHSKSDLHAHAAGGFGTGAETVIALSAKT 357 Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG---LDI 404 G+GL+ L + + + + + RH+ L L +A+L CG +++ Sbjct: 358 GDGLDALKRTLLREAGWQGEGEGLFL-ARTRHVNALKAAQEELSLAAL----CGNHQIEL 412 Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 AE+LRLA V+ G+ITG + LL +IFS+FCIGK Sbjct: 413 FAEHLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448 >gi|157144348|ref|YP_001451667.1| tRNA modification GTPase TrmE [Citrobacter koseri ATCC BAA-895] gi|157081553|gb|ABV11231.1| hypothetical protein CKO_00052 [Citrobacter koseri ATCC BAA-895] Length = 466 Score = 266 bits (680), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 164/459 (35%), Positives = 255/459 (55%), Gaps = 24/459 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+H +TI A +T + I+R+SG +V E + K P PR A F DG Sbjct: 13 MSH-NDTIVAQATPPGRGGVGILRISGLKAREVAEAVLGKL-PKPRYADYLPFKDADGTA 70 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG +++ +L+ + +P LR+A PGEFS RAF N Sbjct: 71 LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIARPGEFSERAFLN 130 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + +E R ++ + G S+ ++ LTH+R ++EA +DF + Sbjct: 131 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 190 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + S ++ + + D+ + ++ + G ++R G K+VI G NAGKSSL NALA Sbjct: 191 EE-IDFLSDGKIEAQLNGVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 249 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + ++G + I DTAG+R+ D VE+ GI+R + E+E AD Sbjct: 250 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQAD 309 Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTY---TEEYDH---LI 343 +L + + + + P + + K+D+ +E H + Sbjct: 310 RVLFMVDGTTTDAVDPAEIWPDFIARLPAKLPITVVRNKADITGETLGISEVNGHSLVRL 369 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401 S+ TGEG++ L N +K + + + +RHL L++ +L+ + L G Sbjct: 370 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALAEAAEHLQQGKSQLLGAWAG 428 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LRLA +L +ITG + LL IFS FCIGK Sbjct: 429 -ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 466 >gi|91790726|ref|YP_551678.1| tRNA modification GTPase TrmE [Polaromonas sp. JS666] gi|123164107|sp|Q121L2|MNME_POLSJ RecName: Full=tRNA modification GTPase mnmE gi|91699951|gb|ABE46780.1| tRNA modification GTPase trmE [Polaromonas sp. JS666] Length = 478 Score = 266 bits (680), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 168/481 (34%), Positives = 250/481 (51%), Gaps = 45/481 (9%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 + + I A++T A+ I+R+SG V IC + PR+A+ F G++ Sbjct: 2 LARHHDPIVAIATAPGRGAVGIVRVSGKDIAPVIAAICGRAL-APRQATYLPFRDAQGQV 60 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAK-------------MPNLRL 107 +D+GL I FP+P S+TGED E HGG V+ +L + + LR+ Sbjct: 61 IDQGLAIHFPAPHSYTGEDVLELQAHGGPVVLQLLLARCLEAGAALNPAIGQPWLAQLRV 120 Query: 108 ANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTH 167 A PGEF+ RAF N KIDL +AE++ADLI + TE R + MSGE S +++L H Sbjct: 121 AQPGEFTERAFLNDKIDLAQAEAIADLIDASTETAARSAARSMSGEFSLAVNTLLEQLIH 180 Query: 168 IRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227 +R +EA LDF EE D+ + + L+ ++ + + G I+R G K+VI G Sbjct: 181 LRMLVEATLDFPEE-DIDFLQKADAQGQLSRLQATLTGVMQRATQGAILREGIKVVIAGQ 239 Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKE 287 NAGKSSL NALA ++AIVT I GTTRD ++ + +EG + + DTAG+RE D VEK Sbjct: 240 PNAGKSSLLNALAGAELAIVTPIAGTTRDKVSELIQIEGVPLHVVDTAGLREALDEVEKI 299 Query: 288 GIKRTFLEVENADLILLLKEINSKKEI----------------------SFPKNIDFIFI 325 G++R + E+E+AD +L L +++ + P+N I + Sbjct: 300 GVERAWAEIESADAVLFLHDLSRRDAALPAQDTINYIAADDRIARTLANKLPENTAIIDV 359 Query: 326 GTKSDLYSTYTEEYDH---LISSFTGEGLEELINKIKSILSNKFKKLPFSI-PSHKRHLY 381 KSDL S + LIS+ TG GL+ L ++ ++ ++ P + + +RH+ Sbjct: 360 WNKSDLTSPAGLQQVQGGVLISAKTGAGLQTLRQRLLQVVG--WQAAPEGVFMARERHVR 417 Query: 382 HLSQTVRYLEMA--SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIG 439 L L A L LD++AE+LR A L +ITG + LL IFS+FCIG Sbjct: 418 ALHHVQDQLATAGRQLQAARPALDLLAEDLRQAQRQLSEITGEFTPDDLLGEIFSRFCIG 477 Query: 440 K 440 K Sbjct: 478 K 478 >gi|256823856|ref|YP_003147819.1| tRNA modification GTPase TrmE [Kangiella koreensis DSM 16069] gi|256797395|gb|ACV28051.1| tRNA modification GTPase TrmE [Kangiella koreensis DSM 16069] Length = 452 Score = 266 bits (680), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 173/455 (38%), Positives = 255/455 (56%), Gaps = 25/455 (5%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64 ++TI A++T + IIR+SG ++ + I K R+A+ F G +D+G Sbjct: 4 QDTIAAIATPPGRGGVGIIRVSGKDATKISQVILGKSIKV-REATYLPFLDHLGHTIDQG 62 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 + I+F +P SFTGED E HGG +++ +L+E+ R+A PGEFS RAF N K+D Sbjct: 63 IAILFKAPNSFTGEDVLELQGHGGPVILDMLLKEVVSA-GARIARPGEFSERAFLNDKLD 121 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ADLI S +E R +M + GE S+ Q ++ L H+R ++EA +DF EEE + Sbjct: 122 LAQAEAIADLIESTSEQAARSAMRSLQGEFSNKVNQLVESLIHLRIYVEAAIDFPEEE-I 180 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 S +V D+ + + I + + G I+R G +VI G NAGKSSL N LA K+ Sbjct: 181 DFLSDGKVQTDLYAIIDAIKQLKKEAQQGSILREGMTVVIAGKPNAGKSSLLNTLAGKES 240 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIVT+I GTTRDVL + ++G V I DTAG+RE+DD VEK GI+R + E++ AD I+L Sbjct: 241 AIVTEIAGTTRDVLREHIHIDGLPVHIIDTAGLRESDDTVEKIGIERAWQEIDKADQIVL 300 Query: 305 LKEINSKKEISFPKNIDFIF------------IGTKSDLYSTY----TEEYDHL-ISSFT 347 + + + + P ID F + K DL EY L +S+ T Sbjct: 301 VADASETHQF-VPHEIDPAFTKFEQFKDKLLIVANKVDLTDQLELPDATEYKVLPLSAKT 359 Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDII 405 G+G+EEL N +K I+ K + S + +RHL + + + Y E L G +++ Sbjct: 360 GQGIEELKNTLKDIVGFK-QTSEGSFIARRRHLDAIERALLYCENGRQQLEVYHAG-ELL 417 Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A+ LR A +L +ITG + LL IFS FCIGK Sbjct: 418 ADELRQAQNALSEITGEFTADDLLGRIFSSFCIGK 452 >gi|325127365|gb|EGC50299.1| tRNA modification GTPase TrmE [Neisseria meningitidis N1568] Length = 448 Score = 266 bits (680), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 167/456 (36%), Positives = 254/456 (55%), Gaps = 24/456 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+ TI AV+T + +IR+SG + + E +C K P PR A+ F DG+ Sbjct: 1 MSDNVPTIAAVATAPGRGGVGVIRISGKNLLPMAEALCGKT-PKPRTATYADFTDADGQA 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D GLL+ F +P SFTGED E HGG V++ +L ++ RLA PGEF++RAF N Sbjct: 60 IDSGLLLFFAAPASFTGEDVIELQGHGGPVVMDMLLNRCLEL-GARLAEPGEFTKRAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE +ADLI + + RL++ + G+ S ++ L +R +EA LDF E Sbjct: 119 DKLDLAQAEGVADLIDASSRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEATLDFPE 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E D+ + + + L+ + ++ + G I+R G +V++G N GKSSL NALA Sbjct: 179 E-DIDFLEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 +VAIVTDI GTTRD + + ++G V I DTAG+RETDD+VE+ GI+R+ V AD Sbjct: 238 GDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEAD 297 Query: 301 LILLLKE----INSKKEI---SFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347 + L+L + +N K + P + I I +KSDL++ + +S+ T Sbjct: 298 VALVLVDPREGLNEKTRAILDALPPELKRIEIHSKSDLHAHAAGGFGTGAETVIALSAKT 357 Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG---LDI 404 G+GL+ L + + + + + RH+ L L +A+L CG +++ Sbjct: 358 GDGLDALKRTLLREAGWQGEGEGLFL-ARTRHVNALKAAQEELSLAAL----CGNHQIEL 412 Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 AE+LRLA V+ G+ITG + LL +IFS+FCIGK Sbjct: 413 FAEHLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448 >gi|16272938|ref|NP_439164.1| tRNA modification GTPase TrmE [Haemophilus influenzae Rd KW20] gi|1574033|gb|AAC22664.1| thiophene and furan oxidation protein (thdF) [Haemophilus influenzae Rd KW20] Length = 461 Score = 266 bits (680), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 167/455 (36%), Positives = 253/455 (55%), Gaps = 23/455 (5%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64 KETI A +T I I+R+SGP +V + I K P PR A F DG ILD+G Sbjct: 11 KETIVAQATAPGRGGIGILRVSGPLATKVAQAILGKC-PKPRMADYLPFKDADGTILDQG 69 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 + + F SP SFTGED E HGG V++ +L+ + ++ +RLA PGEFS +AF N K+D Sbjct: 70 IALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQIDGIRLARPGEFSEQAFLNDKLD 129 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ADLI + +E R +++ + GE S + +D + ++R+++EA +DF +EE + Sbjct: 130 LAQAEAIADLIDATSEQAVRSALKSLQGEFSKKVNELVDSVIYLRTYVEASIDFPDEE-I 188 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + ++ ++ + N + S+ K G I+R G K+VI G NAGKSSL NALA ++ Sbjct: 189 DFLADGKIEANLRGIINQLEDVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREA 248 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIVTDI GTTRDVL + ++G + I DTAG+R+ D VE+ GI R + E+E AD I+L Sbjct: 249 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAIDEVERIGISRAWTEIEQADRIIL 308 Query: 305 -----------LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347 L ++ S+ P + + K DL E + +S+ T Sbjct: 309 MLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKIDLNGEQASESEQGGYQMISLSAQT 368 Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDII 405 +G++ L +K + + + + +RHL L + +L+ + L E G +++ Sbjct: 369 HDGVQLLREHLKQAMGFQ-TGMEGGFLARRRHLDALDKAAEHLQIGLVQLTEFHAG-ELL 426 Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 AE LRL L +ITG + LL IFS FCIGK Sbjct: 427 AEELRLVQSYLSEITGQFTSDDLLGNIFSSFCIGK 461 >gi|332163526|ref|YP_004300103.1| tRNA modification GTPase TrmE [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318608032|emb|CBY29530.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Yersinia enterocolitica subsp. palearctica Y11] gi|325667756|gb|ADZ44400.1| tRNA modification GTPase TrmE [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330861751|emb|CBX71925.1| tRNA modification GTPase mnmE [Yersinia enterocolitica W22703] Length = 454 Score = 266 bits (680), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 165/454 (36%), Positives = 247/454 (54%), Gaps = 23/454 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + I+R+SG + V + + K P PR A F +DG LD+G+ Sbjct: 5 DTIVAQATPPGRGGVGILRVSGRAAATVAQAVLGKL-PKPRYADYLPFKDVDGSTLDQGI 63 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + FP P SFTGED E HGG +++ +L+ + +P LR+A PGEFS RAF N K+DL Sbjct: 64 ALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILALPGLRIARPGEFSERAFLNDKLDL 123 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E R ++ + G S Q ++ LTH+R ++EA +DF +EE + Sbjct: 124 AQAEAIADLIDASSEQAARSAVNSLQGAFSVRIHQLVEALTHLRIYVEAAIDFPDEE-ID 182 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S ++ + + D+ ++ + G ++R G K+VI G NAGKSSL NALA ++ A Sbjct: 183 FLSDGKIEGQLNGVMADLEQVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAA 242 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+E AD +L + Sbjct: 243 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWHEIEQADRVLFM 302 Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYS---TYTEEYDH---LISSFTG 348 + + P + + K+D+ TE H +S+ TG Sbjct: 303 VDGTTTDATEPATIWPEFMARLPATLPITVVRNKADITGETLGLTEVNGHSLIRLSARTG 362 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIA 406 EG++ L N +K + + +RHL L ++L L G +++A Sbjct: 363 EGIDLLRNHLKQSMGFT-SNTEGGFLARRRHLQALETAAQHLAQGHEQLVSAYAG-ELLA 420 Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E LRLA SL +ITG + LL IFS FCIGK Sbjct: 421 EELRLAQQSLSEITGEFSSDDLLGRIFSSFCIGK 454 >gi|227354815|ref|ZP_03839232.1| tRNA modification GTPase [Proteus mirabilis ATCC 29906] gi|227165133|gb|EEI49964.1| tRNA modification GTPase [Proteus mirabilis ATCC 29906] Length = 454 Score = 266 bits (680), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 173/462 (37%), Positives = 256/462 (55%), Gaps = 33/462 (7%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62 H +TI A +T + I+R+SGP V + I K P PR A F D +LD Sbjct: 2 HSTDTIVAQATPPGRGGVGILRVSGPKAAVVAQTILGKV-PKPRYADYLPFRNEDNSVLD 60 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 +G+ + FP+P SFTGED E HGG +++ +L+ + ++P +R+A PGEFS RAF N K Sbjct: 61 QGIALFFPNPNSFTGEDVLELQGHGGPIILDLLLKRILQIPGIRIAKPGEFSERAFLNDK 120 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 +DL +AE++ADLI + +E R ++ + G SS + ++ LT++R ++EA +DF +EE Sbjct: 121 LDLAQAEAIADLIDASSEQAARSAINSLQGAFSSHINEMVESLTNLRIYVEAAIDFPDEE 180 Query: 183 DVQNFSSKEV----LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 +F S V LN ++ +D+ + QG L +R G K+VI G NAGKSSL NA Sbjct: 181 --IDFLSDGVIEGKLNTVISQLDDVRAQARQGSL---LREGMKVVIAGRPNAGKSSLLNA 235 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 LA ++ AIVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+E Sbjct: 236 LAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQ 295 Query: 299 ADLILLLKE-----------INSKKEISFPKNIDFIFIGTKSDLYSTYTE-----EYDHL 342 AD +L + + I + P + I KSDL E +Y + Sbjct: 296 ADRVLFMVDSTTTEATTPEEIWPEFMARLPSTLPVTVIRNKSDLTGEPAEITSQGDYPMI 355 Query: 343 -ISSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEK 398 +S+ G G+E L + +K + N + F + +RHL L+ +L+ L Sbjct: 356 RLSARDGMGIELLRSHLKEAMGFNSNTEGGFL--ARRRHLQALNTAAEHLQQGYQQLVYA 413 Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G +++AE LRLA +L +ITG + LL IFS FCIGK Sbjct: 414 KSG-ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454 >gi|170026449|ref|YP_001722954.1| tRNA modification GTPase TrmE [Yersinia pseudotuberculosis YPIII] gi|205829188|sp|B1JRQ1|MNME_YERPY RecName: Full=tRNA modification GTPase mnmE gi|169752983|gb|ACA70501.1| tRNA modification GTPase TrmE [Yersinia pseudotuberculosis YPIII] Length = 454 Score = 266 bits (680), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 165/454 (36%), Positives = 249/454 (54%), Gaps = 23/454 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + I+R+SG + +V + K P PR A F +DG LD+G+ Sbjct: 5 DTIVAQATPPGRGGVGILRVSGRAASEVAHAVLGKL-PKPRYADYLPFKDVDGSTLDQGI 63 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + FP P SFTGED E HGG +++ +L+ + +P LR+A PGEFS RAF N K+DL Sbjct: 64 ALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILALPGLRIARPGEFSERAFLNDKLDL 123 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E R ++ + G S+ Q ++ LTH+R ++EA +DF +EE + Sbjct: 124 AQAEAIADLIDASSEQAARSAVNSLQGAFSARIHQLVEALTHLRIYVEAAIDFPDEE-ID 182 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S ++ + + D+ ++ + G ++R G K+VI G NAGKSSL NALA ++ A Sbjct: 183 FLSDGKIEGQLNGVMADLEQVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAA 242 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTDI GTTRDVL + ++G + I DTAG+RE +D VE+ GI+R + E+E AD +L + Sbjct: 243 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREANDEVERIGIERAWNEIEQADRVLFM 302 Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDH---LISSFTG 348 + + P + + K+D+ TE H +S+ TG Sbjct: 303 VDGTTTDATEPAAIWPEFMARLPATLPITVVRNKADITGETLGLTEVNGHSLIRLSARTG 362 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIA 406 EG++ L + +K + + +RHL L R+L L G +++A Sbjct: 363 EGIDLLRDHLKQSMGFT-SNTEGGFLARRRHLQALETAARHLIQGHEQLVSAYAG-ELLA 420 Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E LRLA SL +ITG + LL IFS FCIGK Sbjct: 421 EELRLAQQSLSEITGEFSSDDLLGRIFSSFCIGK 454 >gi|123444347|ref|YP_001008312.1| tRNA modification GTPase TrmE [Yersinia enterocolitica subsp. enterocolitica 8081] gi|166234832|sp|A1JT87|MNME_YERE8 RecName: Full=tRNA modification GTPase mnmE gi|122091308|emb|CAL14194.1| putative thiophene and furan oxidation protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 454 Score = 266 bits (680), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 165/454 (36%), Positives = 247/454 (54%), Gaps = 23/454 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + I+R+SG + V + + K P PR A F +DG LD+G+ Sbjct: 5 DTIVAQATPPGRGGVGILRVSGRAAATVAQAVLGKL-PKPRYADYLPFKDVDGSTLDQGI 63 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + FP P SFTGED E HGG +++ +L+ + +P LR+A PGEFS RAF N K+DL Sbjct: 64 ALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILALPGLRIARPGEFSERAFLNDKLDL 123 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E R ++ + G S Q ++ LTH+R ++EA +DF +EE + Sbjct: 124 AQAEAIADLIDASSEQAARSAVNSLQGAFSVRIHQLVEALTHLRIYVEAAIDFPDEE-ID 182 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S ++ + + D+ ++ + G ++R G K+VI G NAGKSSL NALA ++ A Sbjct: 183 FLSDGKIEGQLNGVMADLEQVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAA 242 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+E AD +L + Sbjct: 243 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWHEIEQADRVLFM 302 Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYS---TYTEEYDH---LISSFTG 348 + + P + + K+D+ TE H +S+ TG Sbjct: 303 VDGTTTDATEPAAIWPEFMARLPATLPITVVRNKADITGETLGLTEVNGHSLIRLSARTG 362 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIA 406 EG++ L N +K + + +RHL L ++L L G +++A Sbjct: 363 EGIDLLRNHLKQSMGFT-SNTEGGFLARRRHLQALETAAQHLAQGHEQLVSAYAG-ELLA 420 Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E LRLA SL +ITG + LL IFS FCIGK Sbjct: 421 EELRLAQQSLSEITGEFSSDDLLGRIFSSFCIGK 454 >gi|309973499|gb|ADO96700.1| tRNA modification GTPase mnmE [Haemophilus influenzae R2846] Length = 461 Score = 266 bits (680), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 167/455 (36%), Positives = 252/455 (55%), Gaps = 23/455 (5%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64 KETI A +T I I+R+SGP +V + I K P PR A F DG ILD+G Sbjct: 11 KETIVAQATAPGRGGIGILRVSGPLATKVAQAILGKC-PKPRMADYLPFKDADGTILDQG 69 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 + + F SP SFTGED E HGG V++ +L+ + ++ +RLA PGEFS +AF N K+D Sbjct: 70 IALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQIDGIRLARPGEFSEQAFLNDKLD 129 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ADLI + +E R +++ + GE S +D + ++R+++EA +DF +EE + Sbjct: 130 LAQAEAIADLIDATSEQAARSALKSLQGEFSKKVNTLVDSVIYLRTYVEASIDFPDEE-I 188 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + ++ ++ + N + S+ K G I+R G K+VI G NAGKSSL NALA ++ Sbjct: 189 DFLADGKIEANLRGIINQLEDVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREA 248 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIVTDI GTTRDVL + ++G + I DTAG+R+ D VE+ GI R + E+E AD I+L Sbjct: 249 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDATDEVERIGISRAWTEIEQADRIIL 308 Query: 305 -----------LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347 L ++ S+ P + + K DL E + +S+ T Sbjct: 309 MLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKIDLNGEQASESEQGGYQMISLSAQT 368 Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDII 405 +G++ L +K + + + + +RHL L + +L+ + L E G +++ Sbjct: 369 HDGVKLLREHLKQAMGFQ-AGMEGGFLARRRHLDALDKAAEHLQIGLVQLTEFHAG-ELL 426 Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 AE LRL L +ITG + LL IFS FCIGK Sbjct: 427 AEELRLVQSYLSEITGQFTSDDLLGNIFSSFCIGK 461 >gi|326571730|gb|EGE21743.1| tRNA modification GTPase TrmE [Moraxella catarrhalis BC8] gi|326574355|gb|EGE24298.1| tRNA modification GTPase TrmE [Moraxella catarrhalis CO72] Length = 466 Score = 266 bits (680), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 170/464 (36%), Positives = 263/464 (56%), Gaps = 37/464 (7%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66 TI A+++ + IIRLSG +++ + ++ PR A F+G +G ++D+G++ Sbjct: 10 TIAAIASPIGQGGVGIIRLSGKDAYRIGCLMTRRSNLIPRMAYFGGFYGQEG-VIDEGVI 68 Query: 67 IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126 I F +P SFTGED E HGG+ + N +L + ++ R A GEFS RAFEN KIDL+ Sbjct: 69 IYFKAPHSFTGEDVVELQGHGGMVLQNMLLARVFEL-GARQAAAGEFSYRAFENDKIDLV 127 Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186 +AE+++D IS+ + Q ++ ++GE S + +DKL H+R ++EA +DF EEEDV Sbjct: 128 QAEAISDAISATSVAQATSAIRSLTGEFSQKINELLDKLVHLRLYVEASIDFPEEEDVDF 187 Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246 S + N + + + I ++ K G+++R+G +V+ G NAGKSSL N L+ + AI Sbjct: 188 LSDGIIENKLTEILSGIDRILATAKQGQLLRDGVHVVLAGKPNAGKSSLLNRLSGTERAI 247 Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306 VT+I GTTRD L L L G V ++DTAG+R+TDD VEK GIKR F + AD+++++ Sbjct: 248 VTEIAGTTRDTLEETLILNGLTVHLTDTAGLRKTDDHVEKIGIKRAFDAIRQADVLMMVY 307 Query: 307 EINSKKE-ISFPKNI---------------DFIFIGTKSDL--------YSTYTEEYDHL 342 ++ ++ + ++ + I + KSDL S T+ L Sbjct: 308 DVTTETDPLALADQLFCEGVTEDVGDIIRQKLILVANKSDLLISKPVLQVSCETKSAPKL 367 Query: 343 --ISSFTGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLN 396 +S TGEGL+ELI IL+ K F S+ + RHL L++ Y A L Sbjct: 368 VYVSCETGEGLDELIE----ILTQKVGFHPPENSLIARTRHLDALNRAKGYAIEAYEQLT 423 Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G +++AE+LR + +LG+ITG + ++LL IFS FCIGK Sbjct: 424 IYHAG-ELVAESLRQSQQALGEITGQMSADELLGKIFSSFCIGK 466 >gi|197286945|ref|YP_002152817.1| tRNA modification GTPase TrmE [Proteus mirabilis HI4320] gi|254811490|sp|B4F0U0|MNME_PROMH RecName: Full=tRNA modification GTPase mnmE gi|194684432|emb|CAR46143.1| probable tRNA modification GTPase [Proteus mirabilis HI4320] Length = 454 Score = 266 bits (679), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 173/462 (37%), Positives = 256/462 (55%), Gaps = 33/462 (7%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62 H +TI A +T + I+R+SGP V + I K P PR A F D +LD Sbjct: 2 HSTDTIVAQATPPGRGGVGILRVSGPKAAVVAQTILGKV-PKPRYADYLPFRNEDNSVLD 60 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 +G+ + FP+P SFTGED E HGG +++ +L+ + ++P +R+A PGEFS RAF N K Sbjct: 61 QGIALFFPNPNSFTGEDVLELQGHGGPIILDLLLKRILQIPGIRIAKPGEFSERAFLNDK 120 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 +DL +AE++ADLI + +E R ++ + G SS + ++ LT++R ++EA +DF +EE Sbjct: 121 LDLAQAEAIADLIDASSEQAARSAINSLQGAFSSHINEMVESLTNLRIYVEAAIDFPDEE 180 Query: 183 DVQNFSSKEV----LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 +F S V LN ++ +D+ + QG L +R G K+VI G NAGKSSL NA Sbjct: 181 --IDFLSDGVIEGKLNTVISQLDDVRTQARQGSL---LREGMKVVIAGRPNAGKSSLLNA 235 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 LA ++ AIVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+E Sbjct: 236 LAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQ 295 Query: 299 ADLILLLKE-----------INSKKEISFPKNIDFIFIGTKSDLYSTYTE-----EYDHL 342 AD +L + + I + P + I KSDL E +Y + Sbjct: 296 ADRVLFMVDSTTTEATTPEEIWPEFMARLPSTLPVTVIRNKSDLTGEPAEITSQGDYPMI 355 Query: 343 -ISSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEK 398 +S+ G G+E L + +K + N + F + +RHL L+ +L+ L Sbjct: 356 RLSARDGMGIELLRSHLKEAMGFNSNTEGGFL--ARRRHLQALNTAAEHLQQGYQQLVYA 413 Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G +++AE LRLA +L +ITG + LL IFS FCIGK Sbjct: 414 KSG-ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454 >gi|92115738|ref|YP_575467.1| tRNA modification GTPase TrmE [Nitrobacter hamburgensis X14] gi|123265484|sp|Q1QRZ0|MNME_NITHX RecName: Full=tRNA modification GTPase mnmE gi|91798632|gb|ABE61007.1| tRNA modification GTPase trmE [Nitrobacter hamburgensis X14] Length = 457 Score = 266 bits (679), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 162/460 (35%), Positives = 252/460 (54%), Gaps = 23/460 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+ ++TIFA+S+G PSAI+++R+SG + I P R A L G Sbjct: 1 MHPREQTIFALSSGRPPSAIAVVRVSGAEAGTALQEIAGAI-PVVRTAKRVLLRDLLGEA 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D +++ F P S TGED AEFHVHG AV+N + L+ + ++R A PGEF+RRAFEN Sbjct: 60 IDDAIVLWFAGPASATGEDVAEFHVHGSRAVLNALFAALSSIDHVRPAEPGEFTRRAFEN 119 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GKIDL EAE L DLI ++T+ QRR ++ + G L +W +L + IEA +DF++ Sbjct: 120 GKIDLTEAEGLDDLIHADTDRQRRQALRQLQGLLGDRAREWRRELIEASALIEAGIDFAD 179 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E DV + K + I L+ +I ++ E +R+G + I G NAGKS+L N LA Sbjct: 180 EGDVPDDLLKPAMEKIARLRREIEETLAASAQSERLRDGMTVAIAGPPNAGKSTLLNRLA 239 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 +++ AIV+ GTTRDV+ + LDL+GY V + DTAGIRETDD VE+EG++R +AD Sbjct: 240 RREAAIVSPYAGTTRDVIEVHLDLDGYPVTLIDTAGIRETDDPVEQEGVRRARDRAASAD 299 Query: 301 LILLLKE----INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH--------------- 341 L+L L + + + I + + K D+ ++ + Sbjct: 300 LVLWLADDDNGVGPSQTIG-EGGVPLWLVRNKIDVSGAESDGANPRQLEAKPGQGILPRH 358 Query: 342 -LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC 400 IS+ G+G++EL+ + + F ++ + RH ++ Q + Sbjct: 359 FWISASRGDGVDELVAALTAFSDGWFGSGETAVITRLRH-RNILQDAAASLAKAEALIGQ 417 Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G +++AE +R+A +G++ G VD++ +LD +F FCIGK Sbjct: 418 GDELVAEEIRIAVRLIGRLLGRVDIDDILDSLFHDFCIGK 457 >gi|240127321|ref|ZP_04739982.1| tRNA modification GTPase TrmE [Neisseria gonorrhoeae SK-93-1035] gi|268685687|ref|ZP_06152549.1| thiophene and furan oxidation protein [Neisseria gonorrhoeae SK-93-1035] gi|268625971|gb|EEZ58371.1| thiophene and furan oxidation protein [Neisseria gonorrhoeae SK-93-1035] Length = 448 Score = 266 bits (679), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 166/456 (36%), Positives = 255/456 (55%), Gaps = 24/456 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+ TI AV+T + +IR+SG + + + +C K P PR A+ F DG+ Sbjct: 1 MSDNVPTIAAVATAPGRGGVGVIRISGKNLLPMAQALCGKT-PEPRVATYADFTDADGQA 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D GLL+ F +P SFTGED E HGG V+ +L ++ RLA PGEF++RAF N Sbjct: 60 IDSGLLLFFAAPASFTGEDVIELQGHGGPVVMEMLLNRCLEL-GARLAEPGEFTKRAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE +ADLI + + RL++ + G+ S ++ L +R +EA LDF E Sbjct: 119 DKLDLAQAEGVADLIDASSRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEAALDFPE 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E D+ + + + L+ + ++ + G I+R G +V++G N GKSSL NALA Sbjct: 179 E-DIDFLEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 +VAIVTDI GTTRD + + ++G V I DTAG+RETDD+VE+ GI+R+ V AD Sbjct: 238 GDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEAD 297 Query: 301 LILLLKE----INSKKEI---SFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347 + L+L + +N K + + P ++ I I +KSDL++ + +S+ T Sbjct: 298 VALVLVDPREGLNEKTRMILDTLPSDLKRIEIHSKSDLHAHAAGGFGTGAETVIALSAKT 357 Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG---LDI 404 G+GL+ L + + + + + RH+ L L +A+L CG +++ Sbjct: 358 GDGLDALKRTLLCEAGWQGESEGLFL-ARTRHVNALKAAQEELSLAAL----CGNHQIEL 412 Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 AE+LRLA V+ G+ITG + LL +IFS+FCIGK Sbjct: 413 FAEHLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448 >gi|148828171|ref|YP_001292924.1| tRNA modification GTPase TrmE [Haemophilus influenzae PittGG] gi|166200481|sp|A5UID5|MNME_HAEIG RecName: Full=tRNA modification GTPase mnmE gi|148719413|gb|ABR00541.1| tRNA modification GTPase [Haemophilus influenzae PittGG] Length = 452 Score = 266 bits (679), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 166/455 (36%), Positives = 252/455 (55%), Gaps = 23/455 (5%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64 KETI A +T I I+R+SGP +V + I K P PR A F DG ILD+G Sbjct: 2 KETIVAQATAPGRGGIGILRVSGPLATEVAQAILGKC-PKPRMADYLPFKDADGTILDQG 60 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 + + F SP SFTGED E HGG V++ +L+ + ++ +RLA PGEFS +AF N K D Sbjct: 61 IALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQIDGIRLARPGEFSEQAFLNDKFD 120 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ADLI + +E R +++ + GE S + +D + ++R+++EA +DF +EE + Sbjct: 121 LAQAEAIADLIDATSEQAARSALKSLQGEFSKKVNELVDSVIYLRTYVEASIDFPDEE-I 179 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + ++ ++ + N + ++ K G I+R G K+VI G NAGKSSL NALA ++ Sbjct: 180 DFLADGKIEANLRSIINQLEDVRAEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREA 239 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIVTDI GTTRDVL + ++G + I DTAG+R+ D VE+ GI R + E+E AD I+L Sbjct: 240 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDATDEVERIGISRAWTEIEQADRIIL 299 Query: 305 -----------LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347 L ++ S+ P + + K DL E + +S+ T Sbjct: 300 MLDSSDPESVDLSKVRSEFLAKLPSTLPVTIVRNKIDLNGEQASESEQSGYQMISLSAQT 359 Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDII 405 +G++ L +K + + + + +RHL L + +L+ + L E G +++ Sbjct: 360 HDGVKLLREHLKQAMGFQ-TGMEGGFLARRRHLDALDKAAEHLQIGLVQLTEFHAG-ELL 417 Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 AE LRL L +ITG + LL IFS FCIGK Sbjct: 418 AEELRLVQSYLSEITGQFTSDDLLGNIFSSFCIGK 452 >gi|326561737|gb|EGE12072.1| tRNA modification GTPase TrmE [Moraxella catarrhalis 7169] Length = 466 Score = 266 bits (679), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 170/464 (36%), Positives = 263/464 (56%), Gaps = 37/464 (7%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66 TI A+++ + IIRLSG +++ + ++ PR A F+G +G ++D+G++ Sbjct: 10 TIAAIASPIGQGGVGIIRLSGKDAYRIGCLMTRRSNLIPRMAYFGGFYGQEG-VIDEGVI 68 Query: 67 IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126 I F +P SFTGED E HGG+ + N +L + ++ R A GEFS RAFEN KIDL+ Sbjct: 69 IYFKAPHSFTGEDVVELQGHGGMVLQNMLLARVFEL-GARQAAAGEFSYRAFENDKIDLV 127 Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186 +AE+++D IS+ + Q ++ ++GE S + +DKL H+R ++EA +DF EEEDV Sbjct: 128 QAEAISDAISATSVAQATSAIRSLTGEFSQKINELLDKLVHLRLYVEASIDFPEEEDVDF 187 Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246 S + N + + + I ++ K G+++R+G +V+ G NAGKSSL N L+ + AI Sbjct: 188 LSDGIIENKLTEILSGIDRILATAKQGQLLRDGVHVVLAGKPNAGKSSLLNRLSGTERAI 247 Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306 VT+I GTTRD L L L G V ++DTAG+R+TDD VEK GIKR F + AD+++++ Sbjct: 248 VTEIAGTTRDTLEETLILNGLTVHLTDTAGLRKTDDHVEKIGIKRAFDAIRQADVLMMVY 307 Query: 307 EINSKKE-ISFPKNI---------------DFIFIGTKSDL--------YSTYTEEYDHL 342 ++ ++ + ++ + I + KSDL S T+ L Sbjct: 308 DLTTETDPLALADQLFCEGVTEDVGDIIRQKLILVANKSDLLVSKPVLQVSCETKSVPKL 367 Query: 343 --ISSFTGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLN 396 +S TGEGL+ELI IL+ K F S+ + RHL L++ Y A L Sbjct: 368 VYVSCETGEGLDELIE----ILTQKVGFHPPENSLIARTRHLDALNRAKGYAIEAYEQLT 423 Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G +++AE+LR + +LG+ITG + ++LL IFS FCIGK Sbjct: 424 IYHAG-ELVAESLRQSQQALGEITGQMSADELLGKIFSSFCIGK 466 >gi|145632387|ref|ZP_01788122.1| tRNA modification GTPase [Haemophilus influenzae 3655] gi|144987294|gb|EDJ93824.1| tRNA modification GTPase [Haemophilus influenzae 3655] Length = 452 Score = 266 bits (679), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 167/455 (36%), Positives = 253/455 (55%), Gaps = 23/455 (5%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64 KETI A +T I I+R+SGP +V + I K P PR A F DG ILD+G Sbjct: 2 KETIVAQATAPGRGGIGILRVSGPLATKVAQAILGKC-PKPRMADYLPFKDADGTILDQG 60 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 + + F SP SFTGED E HGG V++ +L+ + ++ +RLA PGEFS +AF N K+D Sbjct: 61 IALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQIDGIRLARPGEFSEQAFLNDKLD 120 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ADLI + +E R +++ + GE S + +D + ++R+++EA +DF +EE + Sbjct: 121 LAQAEAIADLIDATSEQAVRSALKSLQGEFSKKVNELVDSVIYLRTYVEASIDFPDEE-I 179 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + ++ ++ + N + S+ K G I+R G K+VI G NAGKSSL NALA ++ Sbjct: 180 DFLADGKIEANLRGIINQLEDVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREA 239 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIVTDI GTTRDVL + ++G + I DTAG+R+ D VE+ GI R + E+E AD I+L Sbjct: 240 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAIDEVERIGISRAWTEIEQADRIIL 299 Query: 305 -----------LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347 L ++ S+ P + + K DL E + +S+ T Sbjct: 300 MLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKIDLNGEQASESEQGGYQMISLSAQT 359 Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDII 405 +G++ L +K + + + + +RHL L + +L+ + L E G +++ Sbjct: 360 HDGVKLLREHLKQAMGFQ-TGMEGGFLARRRHLDALDKAAEHLQIGLVQLTEFHAG-ELL 417 Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 AE LRL L +ITG + LL IFS FCIGK Sbjct: 418 AEELRLVQSYLSEITGQFTSDDLLGNIFSSFCIGK 452 >gi|15677815|ref|NP_274979.1| tRNA modification GTPase TrmE [Neisseria meningitidis MC58] gi|14195279|sp|Q9JXL4|MNME_NEIMB RecName: Full=tRNA modification GTPase mnmE gi|7227248|gb|AAF42314.1| thiophene and furan oxidation protein ThdF [Neisseria meningitidis MC58] gi|316985629|gb|EFV64576.1| tRNA modification GTPase TrmE [Neisseria meningitidis H44/76] gi|325139307|gb|EGC61848.1| tRNA modification GTPase TrmE [Neisseria meningitidis CU385] gi|325143695|gb|EGC66014.1| tRNA modification GTPase TrmE [Neisseria meningitidis M01-240013] gi|325201035|gb|ADY96490.1| tRNA modification GTPase TrmE [Neisseria meningitidis H44/76] gi|325206892|gb|ADZ02345.1| tRNA modification GTPase TrmE [Neisseria meningitidis M04-240196] Length = 448 Score = 266 bits (679), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 166/456 (36%), Positives = 254/456 (55%), Gaps = 24/456 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+ TI AV+T + +IR+SG + + + +C K P PR A+ F DG+ Sbjct: 1 MSDNVPTIAAVATAPGRGGVGVIRISGKNLLPMAQALCGKT-PKPRTATYADFTDTDGQA 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D GLL+ F +P SFTGED E HGG V++ +L ++ RLA PGEF++RAF N Sbjct: 60 IDSGLLLFFAAPASFTGEDVIELQGHGGPVVMDMLLNRCLEL-GARLAEPGEFTKRAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE +ADLI + + RL++ + G+ S ++ L +R +EA LDF E Sbjct: 119 DKLDLAQAEGVADLIDASSRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEATLDFPE 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E D+ + + + L+ + ++ + G I+R G +V++G N GKSSL NALA Sbjct: 179 E-DIDFLEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 +VAIVTDI GTTRD + + ++G V I DTAG+RETDD+VE+ GI+R+ V AD Sbjct: 238 GDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEAD 297 Query: 301 LILLLKE----INSKKEI---SFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347 + L+L + +N K + P + I I +KSDL++ + +S+ T Sbjct: 298 VALVLVDPREGLNEKTRAILDALPPELKRIEIHSKSDLHAHAAGGFGTGAETVIALSAKT 357 Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG---LDI 404 G+GL+ L + + + + + RH+ L L +A+L CG +++ Sbjct: 358 GDGLDALKRTLLREAGWQGESEGLFL-ARTRHVNALKAAQEELSLAAL----CGNHQIEL 412 Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 AE+LRLA V+ G+ITG + LL +IFS+FCIGK Sbjct: 413 FAEHLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448 >gi|319897487|ref|YP_004135684.1| tRNA modification gtpase mnme [Haemophilus influenzae F3031] gi|317432993|emb|CBY81364.1| tRNA modification GTPase mnmE [Haemophilus influenzae F3031] Length = 452 Score = 266 bits (679), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 167/455 (36%), Positives = 253/455 (55%), Gaps = 23/455 (5%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64 KETI A +T I I+R+SGP +V + I K P PR A F DG ILD+G Sbjct: 2 KETIVAQATAPGRGGIGILRVSGPLATKVAQAILGKC-PKPRMADYLPFKDADGTILDQG 60 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 +++ F SP SFTGED E HGG V++ +L+ + ++ +RLA PGEFS +AF N K+D Sbjct: 61 IVLYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQIDGIRLARPGEFSEQAFLNDKLD 120 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ADLI + +E R +++ + GE S + +D + ++R+++EA +DF +EE + Sbjct: 121 LAQAEAIADLIDATSEQAVRSALKSLQGEFSKKVNELVDSVIYLRTYVEASIDFPDEE-I 179 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 ++ ++ + N + S+ K G I+R G K+VI G NAGKSSL NALA ++ Sbjct: 180 DFLVDGKIEANLRGIINQLEDVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREA 239 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIVTDI GTTRDVL + ++G + I DTAG+R+ D VE+ GI R + E+E AD I+L Sbjct: 240 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAIDEVERIGISRAWTEIEQADRIIL 299 Query: 305 -----------LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347 L ++ S+ P + + K DL E + +S+ T Sbjct: 300 MLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKIDLNGEQASESEQGGYQMISLSAQT 359 Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDII 405 +G++ L +K + + + + +RHL L + +L+ + L E G +++ Sbjct: 360 HDGVQLLREHLKQAMGFQ-TGMEGGFLARRRHLDALDKAAEHLQIGLVQLTEFHAG-ELL 417 Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 AE LRL L +ITG + LL IFS FCIGK Sbjct: 418 AEELRLVQSYLSEITGQFTSDDLLGNIFSSFCIGK 452 >gi|283787594|ref|YP_003367459.1| tRNA modification GTPase [Citrobacter rodentium ICC168] gi|282951048|emb|CBG90726.1| probable tRNA modification GTPase [Citrobacter rodentium ICC168] Length = 454 Score = 266 bits (679), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 165/462 (35%), Positives = 257/462 (55%), Gaps = 30/462 (6%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+H +TI A +T + I+R+SG +V E + K P PR A F DG Sbjct: 1 MSH-NDTIVAQATPPGRGGVGILRISGLKAREVAEAVLGKL-PRPRYADYLPFKDADGAA 58 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG +++ +L+ + +P +R+A PGEFS RAF N Sbjct: 59 LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + +E R ++ + G S+ ++ LTH+R ++EA +DF + Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 178 Query: 181 EEDVQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 EE + S ++ LN+++ D+ + ++ + G ++R G K+VI G NAGKSSL N Sbjct: 179 EE-IDFLSDGKIEAQLNEVI---ADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLN 234 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 ALA ++ AIVTDI GTTRDVL + ++G + I DTAG+R+ D VE+ GI+R + E+E Sbjct: 235 ALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIE 294 Query: 298 NADLILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTY---TEEYDH-- 341 AD +L + + + + P + + K+D+ +E H Sbjct: 295 QADRVLFMVDGTTTDAVDPVEIWPDFIARLPAKLPITVVRNKADITGEALGISEVNGHSL 354 Query: 342 -LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEK 398 +S+ TGEG++ L N +K + + + +RHL L++ +L+ L Sbjct: 355 VRLSARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALAEAAEHLQQGKGQLLGA 413 Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G +++AE LRLA +L +ITG + LL IFS FCIGK Sbjct: 414 WAG-ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454 >gi|238897217|ref|YP_002921965.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae NTUH-K2044] gi|330005209|ref|ZP_08305168.1| tRNA modification GTPase TrmE [Klebsiella sp. MS 92-3] gi|238549547|dbj|BAH65898.1| tRNA modification GTPase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|328536341|gb|EGF62703.1| tRNA modification GTPase TrmE [Klebsiella sp. MS 92-3] Length = 454 Score = 266 bits (679), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 164/459 (35%), Positives = 254/459 (55%), Gaps = 24/459 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+H +TI A +T + I+R+SG V + + K P PR A F +DG Sbjct: 1 MSH-NDTIVAQATPPGRGGVGILRISGLKARDVAQAVLGKL-PKPRYADYLPFNDVDGTP 58 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG +++ +L+ + +P LR+A PGEFS RAF N Sbjct: 59 LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIARPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + +E R ++ + G S+ ++ LTH+R ++EA +DF + Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + S ++ + + D+ + ++ + G ++R G K+VI G NAGKSSL NALA Sbjct: 179 EE-IDFLSDGKIEAQLNEVMADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + ++G + I DTAG+R+ +D VE+ GI+R + E+ AD Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDANDEVERIGIERAWQEIAQAD 297 Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTY---TEEYDH---LI 343 +L + + + + P + + K+D+ +E H + Sbjct: 298 RVLFMVDGTTTGAVDPAEIWPDFIERLPAKLPITVVRNKADVTGEALGISEVNGHSLIRL 357 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401 S+ TGEG+E L N +K + + + +RHL L + +L+ A L G Sbjct: 358 SARTGEGVEVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEEAANHLQQGKAQLLGAWAG 416 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LRLA +L +ITG + LL IFS FCIGK Sbjct: 417 -ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454 >gi|157368276|ref|YP_001476265.1| tRNA modification GTPase TrmE [Serratia proteamaculans 568] gi|166991115|sp|A8G7P7|MNME_SERP5 RecName: Full=tRNA modification GTPase mnmE gi|157320040|gb|ABV39137.1| tRNA modification GTPase TrmE [Serratia proteamaculans 568] Length = 454 Score = 266 bits (679), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 166/454 (36%), Positives = 249/454 (54%), Gaps = 23/454 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + I+R+SG V + + K P PR A F G LD+G+ Sbjct: 5 DTIVAQATPPGRGGVGILRISGRGAKDVAQALLGKL-PKPRYADYLPFRDAAGATLDQGI 63 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + FP P SFTGED E HGG +++ +L+ + +P +R+A PGEFS RAF N K+DL Sbjct: 64 ALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRVLALPGMRIARPGEFSERAFLNDKLDL 123 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E R +M + G S+ Q ++ LTH+R ++EA +DF +EE + Sbjct: 124 AQAEAIADLIDASSEQAARSAMNSLQGAFSTRIHQLVEALTHLRIYVEAAIDFPDEE-ID 182 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S ++ + + D+ S ++ + G ++R G K+VI G NAGKSSL NALA ++ A Sbjct: 183 FLSDGKIEAQLNGVMADLDSVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAA 242 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+E AD +L + Sbjct: 243 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWNEIEQADRVLFM 302 Query: 306 -----------KEINSKKEISFPKNIDFIFIGTKSDLYST---YTEEYDH---LISSFTG 348 EI + P + + K+D+ TE H +S+ TG Sbjct: 303 VDGTTTAATEPAEIWPEFMARLPHRLPITVVRNKADITGETLGMTEVNGHSLIRLSARTG 362 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIA 406 EG++ L + +K + + + +RHL L Q ++L L G +++A Sbjct: 363 EGIDLLRDHLKQSMGFT-SNMEGGFLARRRHLQALEQAAQHLVEGKEQLVSAYAG-ELLA 420 Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E LRLA +L +ITG + LL IFS FCIGK Sbjct: 421 EELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454 >gi|260428910|ref|ZP_05782887.1| tRNA modification GTPase TrmE [Citreicella sp. SE45] gi|260419533|gb|EEX12786.1| tRNA modification GTPase TrmE [Citreicella sp. SE45] Length = 427 Score = 265 bits (678), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 163/445 (36%), Positives = 245/445 (55%), Gaps = 29/445 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TIFA+++ + +++IR+SGP ++ + P PR+ ++R G +LD+ L Sbjct: 2 DTIFALASAPGKAGVAVIRVSGPLAWEAGVRLAGSL-PEPRRTAVRVLRDRQGGVLDEAL 60 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 ++ FP SFTGE EF +HG A++ +L EL + LR+A PGEF+RRA EN ++DL Sbjct: 61 VLAFPDGASFTGERVVEFQIHGSQAILRAVLRELDAVDGLRMAEPGEFTRRALENDRLDL 120 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE--- 182 + E+LADLI SETE QR ++ SG L W L S +E +DF++EE Sbjct: 121 TQVEALADLIESETESQRVQALRVFSGALGQKVDGWRRDLIQAASLLEVTIDFADEEVPV 180 Query: 183 ----DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 DV F + L + + + E IR+G+++ I+G N GKSSL NA Sbjct: 181 DVSDDVSGFLDRVTLA--------LEAELRGLDAAERIRSGFEVAIVGAPNVGKSSLLNA 232 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L+ +D AI ++I GTTRDV+ + +++ G V + DTAG+RET D VEK GI R Sbjct: 233 LSGRDAAITSEIAGTTRDVIEVRMEIAGLPVTLLDTAGLRETQDPVEKIGIARALDRART 292 Query: 299 ADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKI 358 +DL ++L + EI+ P D I +G+K+DL + + +S+ TG+G++ L+ +I Sbjct: 293 SDLRVILVDDRGLPEIT-PVAGD-IVVGSKADLTG-----HANGLSAVTGQGVDWLVREI 345 Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS---LNEKDCGLDIIAENLRLASVS 415 LS + + + + +RH Q L A DC D+ AE +R A S Sbjct: 346 GERLSERVQS--AGLATRERHRVAFEQGKTSLGAAKDLLTRGPDC-YDLAAEEIRSAIRS 402 Query: 416 LGKITGCVDVEQLLDIIFSKFCIGK 440 L + G VDVE LLD IFS FC+GK Sbjct: 403 LELLIGRVDVENLLDEIFSSFCLGK 427 >gi|114769773|ref|ZP_01447383.1| tRNA modification GTPase [alpha proteobacterium HTCC2255] gi|114549478|gb|EAU52360.1| tRNA modification GTPase [alpha proteobacterium HTCC2255] Length = 432 Score = 265 bits (678), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 169/447 (37%), Positives = 252/447 (56%), Gaps = 29/447 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 + IFA+++ + +S+IR+SG + E I +K K LR + + ++D+ L Sbjct: 3 DIIFALASAKGRAGVSVIRISGDNSITSVEKILRKNLSSNNKC-LRKIYDSNNSVIDEVL 61 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 ++ F SFTG+++ E H HG IAVV+ IL L+ + N R+A PGEF+R+A ENG +DL Sbjct: 62 ILTFKKSASFTGDETVEIHCHGSIAVVSHILRTLSSLENFRIAEPGEFTRKALENGNLDL 121 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 ++ E LADLI SETE QRRL++ M G LS W L S IEA +DF+ +ED+ Sbjct: 122 IQVEGLADLIESETEAQRRLAVRSMDGALSKKVQIWRKDLIRAVSLIEATIDFA-DEDIP 180 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 + EVL+ I + +I S I E IR G+++ I+G N GKS+L NALA +D A Sbjct: 181 TDVTPEVLDLINKTQIEIKSEIDGSFAAERIREGFEVAIVGPPNIGKSTLLNALAGRDAA 240 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 I +D+ GTTRDV+ + +D+ G+ V + DTAG+RET D VEK G++ +NAD+ + + Sbjct: 241 ITSDVAGTTRDVIEVKMDINGFAVTLLDTAGLRETTDKVEKIGVELAKTRAKNADIRVFI 300 Query: 306 KEINSKKEISF-PKNIDFIFIGTKSDLYSTYTEEYDHL-ISSFTGEGLEELINKIKSILS 363 + E+ P+ D I IG KSDL ++ D L IS +GEGL+ L+ I IL Sbjct: 301 THDGTVNELKLKPELNDIIVIG-KSDLL----DKTDILSISGKSGEGLDSLLKIISDILE 355 Query: 364 NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASV--------- 414 + + + +RH + + +YL D G ++ ++L L+ Sbjct: 356 DLC--VGAQTATRERHRVAMVKAQKYL--------DEGKALMVDSLELSEFASSEFHQGI 405 Query: 415 -SLGKITGCVDVEQLLDIIFSKFCIGK 440 +L + G V VE LLD IFS FC+GK Sbjct: 406 QTLSSLIGSVGVEDLLDEIFSSFCLGK 432 >gi|309378889|emb|CBX22476.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 448 Score = 265 bits (678), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 166/456 (36%), Positives = 254/456 (55%), Gaps = 24/456 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+ TI AV+T + +IR+SG + + + +C K P PR A+ F DG+ Sbjct: 1 MSDNVPTIAAVATAPGRGGVGVIRISGKNLLPMAQALCGKT-PKPRVATYADFTDADGQA 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D GLL+ F +P SFTGED E HGG V++ +L ++ RLA PGEF++RAF N Sbjct: 60 IDSGLLLFFAAPASFTGEDVIELQGHGGPVVMDMLLNRCLEL-GARLAEPGEFTKRAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE +ADLI + + RL++ + G+ S ++ L +R +EA LDF E Sbjct: 119 DKLDLAQAEGVADLIDASSRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEATLDFPE 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E D+ + + + L+ + ++ + G I+R G +V++G N GKSSL NALA Sbjct: 179 E-DIDFLEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 +VAIVTDI GTTRD + + ++G V I DTAG+RETDD+VE+ GI+R+ V AD Sbjct: 238 GDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEAD 297 Query: 301 LILLLKE----INSKKEI---SFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347 + L+L + +N K + P + I I +KSDL++ + +S+ T Sbjct: 298 VALVLVDPREGVNDKTRAILDALPSELKRIEIHSKSDLHAHAAGGFGTGAETVIALSAKT 357 Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG---LDI 404 G+GL+ L + + + + + RH+ L L +A+L CG +++ Sbjct: 358 GDGLDALKRTLLREAGWQGESEGLFL-ARTRHVNALKAAQEELSLAAL----CGNHQIEL 412 Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 AE+LRLA V+ G+ITG + LL +IFS+FCIGK Sbjct: 413 FAEHLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448 >gi|325133445|gb|EGC56109.1| tRNA modification GTPase TrmE [Neisseria meningitidis M13399] Length = 448 Score = 265 bits (678), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 167/456 (36%), Positives = 254/456 (55%), Gaps = 24/456 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+ TI AV+T + +IR+SG + + E +C K P PR A+ F DG+ Sbjct: 1 MSDNVPTIAAVATAPGRGGVGVIRISGKNLLPMAEALCGKT-PKPRVATYADFTDADGQA 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D GLL+ F +P SFTGED E HGG V++ +L ++ RLA PGEF++RAF N Sbjct: 60 IDSGLLLFFAAPASFTGEDVIELQGHGGPVVMDMLLNRCLEL-GARLAEPGEFTKRAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE +ADLI + + RL++ + G+ S ++ L +R +EA LDF E Sbjct: 119 DKLDLAQAEGVADLIDASSRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEATLDFPE 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E D+ + + + L+ + ++ + G I+R G +V++G N GKSSL NALA Sbjct: 179 E-DIDFLEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 +VAIVTDI GTTRD + + ++G V I DTAG+RETDD+VE+ GI+R+ V AD Sbjct: 238 GDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEAD 297 Query: 301 LILLLKE----INSKKEI---SFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347 + L+L + +N K + P + I I +KSDL++ + +S+ T Sbjct: 298 VALVLVDPREGLNEKTRAILDALPPELKRIEIHSKSDLHAHAAGGFGTGAETVIALSAKT 357 Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG---LDI 404 G+GL+ L + + + + + RH+ L L +A+L CG +++ Sbjct: 358 GDGLDALKRTLLREAGWQGESEGLFL-ARTRHVNALKAAQEELSLAAL----CGNHQIEL 412 Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 AE+LRLA V+ G+ITG + LL +IFS+FCIGK Sbjct: 413 FAEHLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448 >gi|57238770|ref|YP_179906.1| tRNA modification GTPase TrmE [Ehrlichia ruminantium str. Welgevonden] gi|58578693|ref|YP_196905.1| tRNA modification GTPase TrmE [Ehrlichia ruminantium str. Welgevonden] gi|81819295|sp|Q5HCD7|MNME_EHRRW RecName: Full=tRNA modification GTPase mnmE gi|57160849|emb|CAH57749.1| putative tRNA modification GTPase [Ehrlichia ruminantium str. Welgevonden] gi|58417319|emb|CAI26523.1| tRNA modification GTPase [Ehrlichia ruminantium str. Welgevonden] Length = 439 Score = 265 bits (678), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 171/453 (37%), Positives = 254/453 (56%), Gaps = 35/453 (7%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66 TIFA+ T S +++IR+SG + PR A+ + ++D+ ++ Sbjct: 3 TIFALCTPWGKSGVAVIRVSGQDAVKTFMHFKISNAIKPRVATFTPLYNAAHEVIDEVIV 62 Query: 67 IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126 + F +P SFTGED E H HG IAV+ IL EL K+ A PGEFS RAF N K+DL Sbjct: 63 VYFSAPNSFTGEDVVELHTHGSIAVIRMILCELGKI--FIPAGPGEFSLRAFLNNKVDLT 120 Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186 AE++ DLI++ETEMQ + ++ MSG L LY W +L + S +EA +DF EE Sbjct: 121 RAEAIVDLINAETEMQAKQAIRQMSGSLEKLYQSWRQQLIDVLSNMEAYIDFPEE----- 175 Query: 187 FSSKEVLNDILFL----KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 + + +I FL K + +H++ G+ GEI+R G + ILG N+GKS+LFN LAK+ Sbjct: 176 -VTSSAVENISFLLDKIKESLENHLNDGRKGEILRQGIYVAILGEPNSGKSTLFNHLAKR 234 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD-- 300 D+AIV++ GTTRDVL +D+ GY + I DTAGIR+++D VE+EGI+R L+ E+AD Sbjct: 235 DIAIVSEYAGTTRDVLETHIDIAGYPIVIIDTAGIRDSNDPVEQEGIRRAKLKAESADFK 294 Query: 301 LILLLKEINSKKEISFPKNIDF-----IFIGTKSD-----LYSTYTEEYDHLISSFTGEG 350 +I+L E KK+ + ID I + +KSD +S G Sbjct: 295 IIMLPYE---KKDALNNEIIDLIDDRSICVLSKSDSIITQNLININNINFIPVSVCCNLG 351 Query: 351 LEELINKIKSILSNKFK---KLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAE 407 +E L++ I+ + FK PF + +R H+ V L+ S + +++I+E Sbjct: 352 IEHLLSAIQKKVEADFKFCSTSPFI--TSERQRVHIQNAVNILKNISF---ELPMELISE 406 Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +LRL+ L K+ G + E++LD +F KFCIGK Sbjct: 407 DLRLSVRELEKVVGVISNEEILDNVFGKFCIGK 439 >gi|153949187|ref|YP_001403100.1| tRNA modification GTPase TrmE [Yersinia pseudotuberculosis IP 31758] gi|166991119|sp|A7FPC2|MNME_YERP3 RecName: Full=tRNA modification GTPase mnmE gi|152960682|gb|ABS48143.1| tRNA modification GTPase TrmE [Yersinia pseudotuberculosis IP 31758] Length = 454 Score = 265 bits (678), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 165/454 (36%), Positives = 248/454 (54%), Gaps = 23/454 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + I+R+SG + +V + K P PR A F +DG LD+G+ Sbjct: 5 DTIVAQATPPGRGGVGILRVSGRAASEVAHAVLGKL-PKPRYADYLPFKDVDGSTLDQGI 63 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + FP P SFTGED E HGG +++ +L+ + +P LR+A PGEFS RAF N K+DL Sbjct: 64 ALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILALPGLRIARPGEFSERAFLNDKLDL 123 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E R ++ + G S+ Q ++ LTH+R ++EA +DF +EE + Sbjct: 124 AQAEAIADLIDASSEQAARSAVNSLQGAFSARIHQLVEALTHLRIYVEAAIDFPDEE-ID 182 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S ++ + + D+ ++ + G ++R G K+VI G NAGKSSL NALA ++ A Sbjct: 183 FLSDGKIEGQLNGVMADLEQVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAA 242 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTDI GTTRDVL + + G + I DTAG+RE +D VE+ GI+R + E+E AD +L + Sbjct: 243 IVTDIAGTTRDVLREHIHINGMPLHIIDTAGLREANDEVERIGIERAWNEIEQADRVLFM 302 Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYS---TYTEEYDH---LISSFTG 348 + + P + + K+D+ TE H +S+ TG Sbjct: 303 VDGTTTDATEPAAIWPEFMARLPATLPITVVRNKADITGETLGLTEVNGHSLIRLSARTG 362 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIA 406 EG++ L + +K + + +RHL L R+L L G +++A Sbjct: 363 EGIDLLRDHLKQSMGFT-SNTEGGFLARRRHLQALETAARHLIQGHEQLVSAYAG-ELLA 420 Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E LRLA SL +ITG + LL IFS FCIGK Sbjct: 421 EELRLAQQSLSEITGEFSSDDLLGRIFSSFCIGK 454 >gi|261378121|ref|ZP_05982694.1| tRNA modification GTPase TrmE [Neisseria cinerea ATCC 14685] gi|269145579|gb|EEZ71997.1| tRNA modification GTPase TrmE [Neisseria cinerea ATCC 14685] Length = 448 Score = 265 bits (678), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 169/456 (37%), Positives = 260/456 (57%), Gaps = 24/456 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+ + TI AV+T + ++R+SG + + + +C K P PR A+ F ++G Sbjct: 1 MSDKDSTIAAVATAPGRGGVGVVRVSGKNLLPMAQALCGKT-PLPRVATYADFKDVNGEA 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D GLL+ F +P SFTGED E HGG V+ +L ++ RLA PGEF++RAF N Sbjct: 60 IDNGLLLFFAAPASFTGEDVIELQGHGGPVVMEMLLNRCLEL-GARLAEPGEFTKRAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE +ADLI + + RL++ + G+ S +D L +R +EA LDF E Sbjct: 119 DKLDLAQAEGVADLIDASSRTAARLALRSLKGDFSRRIHGLVDDLVTLRMLVEATLDFPE 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E D+ + + + L+ + ++ + G I+R G +V++G N GKSSL NALA Sbjct: 179 E-DIDFLEAADARGKLEGLRRSVDEVLANARQGAILREGMNVVLVGAPNVGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 +VAIVTDI GTTRD + + ++G V I DTAG+RETDD+VE+ GI+R+ V AD Sbjct: 238 GDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEAD 297 Query: 301 LILLLKE----INSKKEI---SFPKNIDFIFIGTKSDLYS----TYTEEYDHLI--SSFT 347 + L+L + +N K + + P ++ I I +KSDL++ + D +I S+ T Sbjct: 298 VALVLVDPREGLNEKTRMILDTLPSDLKRIEIHSKSDLHTGAAVAFETGADTVIPLSAKT 357 Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG---LDI 404 G GL+ L + + + + + + RHL L LE+A+L CG +++ Sbjct: 358 GAGLDVLRQTLLREVGWQGEGEGLFL-ARARHLNALKAAQGELELAAL----CGNGQIEL 412 Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +AE+LRLA V+ G+ITG + LL +IFS+FCIGK Sbjct: 413 LAEHLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448 >gi|229843939|ref|ZP_04464080.1| tRNA modification GTPase TrmE [Haemophilus influenzae 6P18H1] gi|229812933|gb|EEP48621.1| tRNA modification GTPase TrmE [Haemophilus influenzae 6P18H1] Length = 452 Score = 265 bits (678), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 167/455 (36%), Positives = 252/455 (55%), Gaps = 23/455 (5%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64 KETI A +T I I+R+SGP +V + I K P PR A F DG ILD+G Sbjct: 2 KETIVAQATAPGRGGIGILRVSGPLATKVAQAILGKC-PKPRMADYLPFKDADGTILDQG 60 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 + + F SP SFTGED E HGG V++ +L+ + ++ +RLA PGEFS +AF N K+D Sbjct: 61 IALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQIDGIRLARPGEFSEQAFLNDKLD 120 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ADLI + +E R +++ + GE S +D + ++R+++EA +DF +EE + Sbjct: 121 LAQAEAIADLIDATSEQAVRSALKSLQGEFSKKVNALVDSVIYLRTYVEASIDFPDEE-I 179 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + ++ ++ + N + S+ K G I+R G K+VI G NAGKSSL NALA ++ Sbjct: 180 DFLADGKIEANLRGIINQLEDVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREA 239 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIVTDI GTTRDVL + ++G + I DTAG+R+ D VE+ GI R + E+E AD I+L Sbjct: 240 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDATDEVERIGISRAWTEIEQADRIIL 299 Query: 305 -----------LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347 L ++ S+ P + + K DL E + +S+ T Sbjct: 300 MLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKIDLNGEQASESEQGGYQMISLSAQT 359 Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDII 405 +G++ L +K + + + + +RHL L + +L+ + L E G +++ Sbjct: 360 HDGVKLLREHLKQAMGFQ-AGMEGGFLARRRHLDALDKAAEHLQIGLVQLTEFHAG-ELL 417 Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 AE LRL L +ITG + LL IFS FCIGK Sbjct: 418 AEELRLVQSYLSEITGQFTSDDLLGNIFSSFCIGK 452 >gi|109900608|ref|YP_663863.1| tRNA modification GTPase TrmE [Pseudoalteromonas atlantica T6c] gi|123170439|sp|Q15MS9|MNME_PSEA6 RecName: Full=tRNA modification GTPase mnmE gi|109702889|gb|ABG42809.1| tRNA modification GTPase trmE [Pseudoalteromonas atlantica T6c] Length = 460 Score = 265 bits (678), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 166/459 (36%), Positives = 254/459 (55%), Gaps = 29/459 (6%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63 +++TI A +T + + I+R+SG +V E I P R A F G LD+ Sbjct: 9 DQDTIVAQATASGRGGVGIVRVSGSLAAKVAEQIIGHV-PLIRNAQYVPFKSNTGEPLDQ 67 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 G+ + F +P SFTGED E HGG V++ +++ +PN+RLA PGEFS RA+ N K+ Sbjct: 68 GIALFFKAPHSFTGEDVLELQGHGGQVVLDMLIKATLHVPNVRLARPGEFSERAYLNDKL 127 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL +AE++ADLI + +E R ++ + GE S+ ++ LTH+R ++EA +DF +EE Sbjct: 128 DLAQAEAIADLIDASSEQAARGALRSLQGEFSTQINSLVELLTHLRIYVEAAIDFPDEE- 186 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 + S +V ND+ + +SS SQ + G ++R G ++VI G NAGKSSL NALA +D Sbjct: 187 IDFLSDGKVQNDLKAITKQLSSVKSQARQGSLLREGMRVVIAGRPNAGKSSLLNALAGRD 246 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303 AIVT I GTTRDVL + ++G + I DTAG+R++ D VE+ GI+R + E+E AD +L Sbjct: 247 AAIVTAIAGTTRDVLKEHIHIDGMPLHIIDTAGLRDSSDEVERIGIERAWQEIEQADRVL 306 Query: 304 LLKEINSKKE-----------ISFPKNIDFIFIGTKSDLYSTYTE--EYDHL----ISSF 346 + + E PKN+ I K+DL +YD +S+ Sbjct: 307 FMLDSTETHENDPYKIWPEFMRRLPKNMGLTVIRNKADLSGENVGKVQYDDYPVFQLSAS 366 Query: 347 TGEGLEELINKIKSIL----SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCG 401 +G+E L +K + SN+ + + + +RH+ + + +L + E + Sbjct: 367 HKQGIEVLAEHLKECMGFHSSNEGQFI-----ARRRHIDAIERAEEHLLLGKQQLEDNLA 421 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LRLA L +ITG + LL IFS FCIGK Sbjct: 422 GELLAEELRLAQAYLSEITGEFSSDDLLGKIFSSFCIGK 460 >gi|326560694|gb|EGE11062.1| tRNA modification GTPase TrmE [Moraxella catarrhalis 46P47B1] Length = 466 Score = 265 bits (678), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 170/464 (36%), Positives = 263/464 (56%), Gaps = 37/464 (7%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66 TI A+++ + IIRLSG +++ + ++ PR A F+G +G ++D+G++ Sbjct: 10 TIAAIASPIGQGGVGIIRLSGKDAYRIGCLMTRRSNLIPRMAYFGGFYGQEG-VIDEGVI 68 Query: 67 IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126 I F +P SFTGED E HGG+ + N +L + ++ R A GEFS RAFEN KIDL+ Sbjct: 69 IYFKAPHSFTGEDVVELQGHGGMVLQNMLLARVFEL-GARQAAAGEFSYRAFENDKIDLV 127 Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186 +AE+++D IS+ + Q ++ ++GE S + +DKL H+R ++EA +DF EEEDV Sbjct: 128 QAEAISDAISATSVAQATSAIRSLTGEFSQKINELLDKLVHLRLYVEASIDFPEEEDVDF 187 Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246 S + N + + + I ++ K G+++R+G +V+ G NAGKSSL N L+ + AI Sbjct: 188 LSDGIIENKLTEILSGIDRILATAKQGQLLRDGVHVVLAGKPNAGKSSLLNRLSGTERAI 247 Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306 VT+I GTTRD L L L G V ++DTAG+R+TDD VEK GIKR F + AD+++++ Sbjct: 248 VTEIAGTTRDTLEETLVLNGLTVHLTDTAGLRKTDDHVEKIGIKRAFDAIRQADVLIMVY 307 Query: 307 EINSKKE-ISFPKNI---------------DFIFIGTKSDL--------YSTYTEEYDHL 342 ++ ++ + ++ + I + KSDL S T+ L Sbjct: 308 DVTTETDPLALADQLFCEGVTEDVGDIIRQKLILVANKSDLLISKPVLQVSCETKSAPKL 367 Query: 343 --ISSFTGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLN 396 +S TGEGL+ELI IL+ K F S+ + RHL L++ Y A L Sbjct: 368 VYVSCETGEGLDELIE----ILTQKVGFHPPENSLIARTRHLDALNRAKGYAIEAYEQLT 423 Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G +++AE+LR + +LG+ITG + ++LL IFS FCIGK Sbjct: 424 IYHAG-ELVAESLRQSQQALGEITGQMSADELLGKIFSSFCIGK 466 >gi|56461736|ref|YP_157017.1| tRNA modification GTPase TrmE [Idiomarina loihiensis L2TR] gi|81821749|sp|Q5QZJ5|MNME_IDILO RecName: Full=tRNA modification GTPase mnmE gi|56180746|gb|AAV83468.1| ThdF [Idiomarina loihiensis L2TR] Length = 458 Score = 265 bits (678), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 167/454 (36%), Positives = 255/454 (56%), Gaps = 23/454 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + I+R+SG +C +V E + P PRKA F+ L ++LD+G+ Sbjct: 9 DTIVAQATPPGRGGVGIVRVSGKACKEVAEKLLGHC-PKPRKAEYLPFYDLQEQLLDEGI 67 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + FP P SFTGED E HGG +++ I+ + ++P +R A PGEFS RAF N K+DL Sbjct: 68 ALFFPGPNSFTGEDVLELQGHGGPVIIDMIIRAILEIPGIRPARPGEFSERAFLNDKLDL 127 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E + +++ + GE S Q +D + H+R ++EA +DF +EE + Sbjct: 128 TQAEAIADLIDTNSEQAAKAALQSLKGEFSHKIDQLVDAVIHLRIYVEAAIDFPDEE-ID 186 Query: 186 NFSSKEVLNDILFLKNDISSHISQ-GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 S +V D+ + + + HI Q K G ++R G +IVI G NAGKSSL NALA ++ Sbjct: 187 FLSDGKVSGDLAEIIDQL-FHIEQEAKQGTLMREGMRIVIAGRPNAGKSSLLNALAGRES 245 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIVT+I GTTRDVL + ++ + I DTAG+RE+ D VEK GI+R + E+ AD +L Sbjct: 246 AIVTEIAGTTRDVLREHIQIDSMPLHIIDTAGLRESPDHVEKIGIERAWDEIRQADRVLF 305 Query: 305 LKEINSKKEI-----------SFPKNIDFIFIGTKSDLYSTYT--EEYDHL----ISSFT 347 + + I P+++ + I K DL T +E++++ +S+ T Sbjct: 306 MVDSQETSAIHPDDIWPEFFAQLPEDMPYTVIRNKVDLSEEPTGIDEHNNIPVIHLSAKT 365 Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT-VRYLEMASLNEKDCGLDIIA 406 G G+E L +K + S + +RHL L++ V L+ E + +I+A Sbjct: 366 GHGIELLREHLKHCVGYSATS-EGSFMARRRHLEALAKAKVHLLQGLEQLEANMAGEILA 424 Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E LRL L +ITG + LL IF FCIGK Sbjct: 425 EELRLTQQHLNEITGEFTSDDLLGQIFGSFCIGK 458 >gi|326563099|gb|EGE13372.1| tRNA modification GTPase TrmE [Moraxella catarrhalis 12P80B1] Length = 466 Score = 265 bits (678), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 170/464 (36%), Positives = 263/464 (56%), Gaps = 37/464 (7%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66 TI A+++ + IIRLSG +++ + ++ PR A F+G +G ++D+G++ Sbjct: 10 TIAAIASPIGQGGVGIIRLSGKDAYRIGCLMTRRSNLIPRMAYFGGFYGQEG-VIDEGVI 68 Query: 67 IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126 I F +P SFTGED E HGG+ + N +L + ++ R A GEFS RAFEN KIDL+ Sbjct: 69 IYFKAPHSFTGEDVVELQGHGGMVLQNMLLARVFEL-GARQAAAGEFSYRAFENDKIDLV 127 Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186 +AE+++D IS+ + Q ++ ++GE S + +DKL H+R ++EA +DF EEEDV Sbjct: 128 QAEAISDAISATSVAQATSAIRSLTGEFSQKINELLDKLVHLRLYVEASIDFPEEEDVDF 187 Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246 S + N + + + I ++ K G+++R+G +V+ G NAGKSSL N L+ + AI Sbjct: 188 LSDGIIENKLTEILSGIDRILATAKQGQLLRDGVHVVLAGKPNAGKSSLLNRLSGTERAI 247 Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306 VT+I GTTRD L L L G V ++DTAG+R+TDD VEK GIKR F + AD+++++ Sbjct: 248 VTEIAGTTRDTLEETLILNGLTVHLTDTAGLRKTDDHVEKIGIKRAFDAIRQADVLIMVY 307 Query: 307 EINSKKE-ISFPKNI---------------DFIFIGTKSDL--------YSTYTEEYDHL 342 ++ ++ + ++ + I + KSDL S T+ L Sbjct: 308 DVTTETDPLALADQLFCEGVTEDVGDIIRQKLILVANKSDLLISKPVLQVSCETKSAPKL 367 Query: 343 --ISSFTGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLN 396 +S TGEGL+ELI IL+ K F S+ + RHL L++ Y A L Sbjct: 368 VYVSCETGEGLDELIE----ILTQKVGFHPPENSLIARTRHLDALNRAKGYAIEAYEQLT 423 Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G +++AE+LR + +LG+ITG + ++LL IFS FCIGK Sbjct: 424 IYHAG-ELVAESLRQSQQALGEITGQMSADELLGKIFSSFCIGK 466 >gi|117619237|ref|YP_858697.1| tRNA modification GTPase TrmE [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|166200466|sp|A0KQZ6|MNME_AERHH RecName: Full=tRNA modification GTPase mnmE gi|117560644|gb|ABK37592.1| tRNA modification GTPase TrmE [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 453 Score = 265 bits (678), Expect = 9e-69, Method: Compositional matrix adjust. Identities = 168/453 (37%), Positives = 249/453 (54%), Gaps = 21/453 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + I+R+SGP+ QV E + K P R A F G+ LD+G+ Sbjct: 4 DTIVAQATAPGRGGVGIVRVSGPAAEQVAEIVLGKL-PRVRYAEYLPFRDEQGQPLDQGI 62 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 ++F +P SFTGED E HGG +++ ++ + ++ LR A PGEFS RAF N K+DL Sbjct: 63 ALLFKAPNSFTGEDVLELQGHGGPVIMDMLVRRILQIKGLRPARPGEFSERAFMNDKLDL 122 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E R +M + G+ S Q ++ LT +R ++EA +DF +EE + Sbjct: 123 AQAEAIADLIEASSEQAARSAMHSLQGQFSGKIQQLVESLTRLRIYVEAAIDFPDEE-ID 181 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S +V D+ + ++ + K G ++R G K+VI G NAGKSSL NALA ++ A Sbjct: 182 FLSDGKVAGDLYAIMAELDDVRGEAKQGALLREGMKVVIAGRPNAGKSSLLNALAGRESA 241 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVT+I GTTRDVL + L+G + I DTAG+R+T D VE+ GI+R + E+E AD +L + Sbjct: 242 IVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTQDKVEQIGIERAWAEIEQADRVLFM 301 Query: 306 -----------KEINSKKEISFPKNIDFIFIGTKSDLYS---TYTEEYDHL---ISSFTG 348 +EI + PK I + K+DL ++E H IS+ T Sbjct: 302 VDGTTTAAVDPREIWPEFVDRLPKKIGLTVVRNKADLTGEDLAPSQELGHAVYRISAKTE 361 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407 GL L +K+ + + + +RHL L + L +A E +++AE Sbjct: 362 LGLSALREHLKACMGFQ-GNTEGGFMARRRHLDALERAAERLLVAKEQLEVFVAGELVAE 420 Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LRLA SL +ITG + LL IFS FCIGK Sbjct: 421 ELRLAQESLSEITGEFSSDDLLGRIFSSFCIGK 453 >gi|242241426|ref|YP_002989607.1| tRNA modification GTPase TrmE [Dickeya dadantii Ech703] gi|242133483|gb|ACS87785.1| tRNA modification GTPase TrmE [Dickeya dadantii Ech703] Length = 453 Score = 265 bits (678), Expect = 9e-69, Method: Compositional matrix adjust. Identities = 168/462 (36%), Positives = 258/462 (55%), Gaps = 31/462 (6%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+H +TI A +T + I+R+SG + V + + K P PR A F DG + Sbjct: 1 MSH-SDTIVAQATPPGRGGVGILRISGAAAAAVAQAVLGKL-PRPRHADYLPFRDTDGSV 58 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP+P SFTGED E HGG +++ +L+ + P++R+A PGEFS RAF N Sbjct: 59 LDQGIALWFPAPNSFTGEDVLELQGHGGPVILDLLLKRILAQPDVRIARPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + +E R ++ + G S+ Q ++ LTH+R ++EA +DF + Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSAVNSLQGAFSTHVHQLVEALTHLRIYVEAAIDFPD 178 Query: 181 EEDVQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 EE + S ++ LND++ ++ + +Q + G ++R G K+VI G NAGKSSL N Sbjct: 179 EE-IDFLSDGKIEAQLNDVI---ANLDAVRAQARQGSLLREGMKVVIAGRPNAGKSSLLN 234 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 ALA +D AIVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+E Sbjct: 235 ALAGRDAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIE 294 Query: 298 NADLILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTY--TEEYDHL-- 342 AD +L + + + + P + I K+D E+ H Sbjct: 295 QADRVLFMVDGTTTDAVEPSAIWPEFMARLPATLPITVIRNKADTTGEPLGMEQNTHTLI 354 Query: 343 -ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401 +S+ TG G++ L + +K + + +RHL L Q +L+ +E+ G Sbjct: 355 RLSARTGAGVDLLRDHLKQSMGFT-SNTEGGFLARRRHLQALEQAAEHLQQG--HEQLVG 411 Query: 402 L---DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LRLA +L +ITG + LL IFS FCIGK Sbjct: 412 AYAGELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 453 >gi|53802851|ref|YP_115425.1| tRNA modification GTPase TrmE [Methylococcus capsulatus str. Bath] gi|81823572|sp|Q602M5|MNME_METCA RecName: Full=tRNA modification GTPase mnmE gi|53756612|gb|AAU90903.1| tRNA modification GTPase TrmE [Methylococcus capsulatus str. Bath] Length = 448 Score = 265 bits (678), Expect = 9e-69, Method: Compositional matrix adjust. Identities = 168/449 (37%), Positives = 256/449 (57%), Gaps = 17/449 (3%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63 +++TI A++T + I+R+SG + V + + + P PR A R+F DGR +D Sbjct: 5 DRDTITAIATPPGKGGVGIVRISGSNLGPVLDALLGRP-PRPRYAEFRHFLDADGRAIDS 63 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 G+ + FP+P SFTGE+ E H HGG V++ +L ++ RLA PGEFS RA+ NGK+ Sbjct: 64 GIALYFPAPRSFTGENVLELHGHGGPVVLDLLLRRTLQL-GCRLARPGEFSERAYLNGKL 122 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL +AE++ADLI S TE R + + GE S+ + L +R+++EA +DFS+E D Sbjct: 123 DLAQAEAIADLIDSSTEESARSAQRSLQGEFSAHIHHLQECLVRLRTYVEAAIDFSDE-D 181 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 + + ++I L +++ + ++ G ++R G VI G N GKSSL NALA +D Sbjct: 182 IDLLDDATLGHEITGLLDELDTIDTKAHQGALLREGLTTVIAGRPNVGKSSLLNALAGRD 241 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303 +AIVT+IPGTTRD+L L + G + I DTAG+R+++D +E+EGI+R + NAD IL Sbjct: 242 LAIVTEIPGTTRDLLRESLQVGGLPLHIVDTAGLRDSEDPIEREGIRRARDALANADCIL 301 Query: 304 LL-----KEINSKKEISFPKNIDFIFIGTKSDLY---STYTEEYDHLI---SSFTGEGLE 352 L+ E P+ I I I K DL ++ T E + + S+ TGEG++ Sbjct: 302 LVCDARHTEAGDALPADLPETIPLIRIFNKIDLTGAPASLTVERETTVIHLSARTGEGVD 361 Query: 353 ELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411 L +I I +KK + + +RHL + + + A L +++AE LR Sbjct: 362 LLRQEI--IRRAGYKKGTEGVFSARRRHLDAIRRARAAVANARLYLHTKTAELLAEELRA 419 Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A +LG+ITG E LL+ IFS FC+GK Sbjct: 420 AQKALGEITGEFTNEDLLNRIFSSFCLGK 448 >gi|30248403|ref|NP_840473.1| tRNA modification GTPase TrmE [Nitrosomonas europaea ATCC 19718] gi|46577435|sp|Q82XA1|MNME_NITEU RecName: Full=tRNA modification GTPase mnmE gi|30138289|emb|CAD84297.1| GTP-binding protein (HSR1-related):tRNA modification GTPase TrmE [Nitrosomonas europaea ATCC 19718] Length = 451 Score = 265 bits (678), Expect = 9e-69, Method: Compositional matrix adjust. Identities = 171/455 (37%), Positives = 252/455 (55%), Gaps = 28/455 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A++T I I+R+SG + + I K P PR A L F + +I+D+G+ Sbjct: 5 DTIAAIATPPGRGGIGIVRISGTNLESLARGILGKL-PDPRHAGLFSFLDQNSQIIDQGI 63 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + FPSP S+TGE+ E HGG AV+N +L+ ++ RLA PGEF+ RAF N K+DL Sbjct: 64 ALYFPSPHSYTGEEVLELQGHGGPAVMNLLLDRCLQL-GARLAEPGEFTLRAFLNDKLDL 122 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE +ADLI++ T R ++ + GE SS Q + L +R +EA LDF EEE + Sbjct: 123 AQAEGVADLIAASTANAARCAVRSLHGEFSSTIHQLVSALIDLRVLVEATLDFPEEE-ID 181 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S + ++ + + + G +++ G K+V+ G N GKSSL N LA +VA Sbjct: 182 FLQSAHAAEQLATIRAKLEQVLVASRQGNLLQEGIKVVLAGQPNVGKSSLLNRLAGDEVA 241 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTDIPGTTRD + +++EG + + DTAG+RET DIVE+ GI RT+ +E ADL+LLL Sbjct: 242 IVTDIPGTTRDTVRQSIEIEGIPLHLIDTAGLRETSDIVEQHGIARTYAAIEQADLVLLL 301 Query: 306 KEINSKKEIS---------FPKNIDFIFIGTKSDLYST------YTEEYDHLISSFTGEG 350 ++S+ ++ P+ + + + K DL + T +S+ GEG Sbjct: 302 --VDSRHGVTEEDRSVLTRLPERLPVLTVHNKIDLSAQPPRLEENTSGPTIYLSAINGEG 359 Query: 351 LEEL---INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LNEKDCGLDII 405 +E L + K +N + + + +RHL L Q LE A+ L+ D L+I+ Sbjct: 360 IELLRAALLKTAGWQANIAGEGAYM--ARQRHLQALIQAKELLERAAAWLHRADQ-LEIL 416 Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 AE LRLA +L ITG + LL IFS FCIGK Sbjct: 417 AEELRLAQQALSSITGEFTSDDLLGEIFSSFCIGK 451 >gi|260581920|ref|ZP_05849716.1| tRNA modification GTPase TrmE [Haemophilus influenzae NT127] gi|260095113|gb|EEW79005.1| tRNA modification GTPase TrmE [Haemophilus influenzae NT127] Length = 452 Score = 265 bits (678), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 166/455 (36%), Positives = 252/455 (55%), Gaps = 23/455 (5%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64 KETI A +T I I+R+SGP +V + I K P PR A F DG ILD+G Sbjct: 2 KETIVAQATAPGRGGIGILRVSGPLATEVAQAILGKC-PKPRMADYLPFKDADGTILDQG 60 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 + + F SP SFTGED E HGG V++ +L+ + ++ +RLA PGEFS +AF N K D Sbjct: 61 IALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQIDGIRLARPGEFSEQAFLNDKFD 120 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ADLI + +E R +++ + GE S + +D + ++R+++EA +DF +EE + Sbjct: 121 LAQAEAIADLIDATSEQAARSALKSLQGEFSKKVNELVDSVIYLRTYVEASIDFPDEE-I 179 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + ++ ++ + N + ++ K G I+R G K+VI G NAGKSSL NALA ++ Sbjct: 180 DFLADGKIEANLRGIINQLEDVRAEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREA 239 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIVTDI GTTRDVL + ++G + I DTAG+R+ D VE+ GI R + E+E AD I+L Sbjct: 240 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDATDEVERIGISRAWTEIEQADRIIL 299 Query: 305 -----------LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347 L ++ S+ P + + K DL E + +S+ T Sbjct: 300 MLDSSDPESVNLSKVRSEFLAKLPSTLPVTIVRNKIDLNGEQASESEQGGYQIISLSAQT 359 Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDII 405 +G++ L +K + + + + +RHL L + +L+ + L E G +++ Sbjct: 360 HDGVKLLREHLKQAMGFQ-TGIEGGFLARRRHLDALEKAAEHLQIGLVQLTEFHAG-ELL 417 Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 AE LRL L +ITG + LL IFS FCIGK Sbjct: 418 AEELRLVQSYLSEITGQFTSDDLLGNIFSSFCIGK 452 >gi|269215192|ref|ZP_06159102.1| tRNA modification GTPase TrmE [Neisseria lactamica ATCC 23970] gi|269208082|gb|EEZ74537.1| tRNA modification GTPase TrmE [Neisseria lactamica ATCC 23970] Length = 536 Score = 265 bits (678), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 167/456 (36%), Positives = 255/456 (55%), Gaps = 24/456 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+ TI AV+T + +IR+SG + + E +C K P PR A+ F DG+ Sbjct: 89 MSDNVPTIAAVATAPGRGGVGVIRISGKNLLPMAEALCGKT-PKPRVATYADFTDADGQA 147 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D GLL+ F +P SFTGED E HGG V++ +L ++ RLA PGEF++RAF N Sbjct: 148 IDSGLLLFFAAPASFTGEDVIELQGHGGPVVMDMLLNRCLEL-GARLAEPGEFTKRAFLN 206 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE +ADLI + + RL++ + G+ S ++ L +R +EA LDF E Sbjct: 207 DKLDLAQAEGVADLIDASSRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEATLDFPE 266 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E D+ + + + L+ + ++ + G I+R G +V++G N GKSSL NALA Sbjct: 267 E-DIDFLEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALA 325 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 +VAIVTDI GTTRD + + ++G V I DTAG+RETDD+VE+ GI+R+ V AD Sbjct: 326 GDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEAD 385 Query: 301 LILLLKE----INSKKEI---SFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347 + L+L + +N K + P + I I +KSDL++ + +S+ T Sbjct: 386 VALVLVDPREGLNEKTRAILDALPPELKRIEIHSKSDLHAHAAGGFGTGAETVIALSAKT 445 Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG---LDI 404 G+GL+ L + + + + + RH+ L L +A+L CG +++ Sbjct: 446 GDGLDALKRTLLREAGWQGESEGLFL-ARTRHVNALKAAQEELSLAAL----CGNHQIEL 500 Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +AE+LRLA V+ G+ITG + LL +IFS+FCIGK Sbjct: 501 LAEHLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 536 >gi|325201374|gb|ADY96828.1| tRNA modification GTPase TrmE [Neisseria meningitidis M01-240149] Length = 448 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 166/456 (36%), Positives = 254/456 (55%), Gaps = 24/456 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+ TI AV+T + +IR+SG + + + +C K P PR A+ F DG+ Sbjct: 1 MSDNVPTIAAVATAPGRGGVGVIRISGKNLLPMAQALCGKT-PKPRVATYADFTDADGQA 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D GLL+ F +P SFTGED E HGG V++ +L ++ RLA PGEF++RAF N Sbjct: 60 IDSGLLLFFAAPASFTGEDVIELQGHGGPVVMDMLLNRCLEL-GARLAEPGEFTKRAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE +ADLI + + RL++ + G+ S ++ L +R +EA LDF E Sbjct: 119 DKLDLAQAEGVADLIDASSRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEATLDFPE 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E D+ + + + L+ + ++ + G I+R G +V++G N GKSSL NALA Sbjct: 179 E-DIDFLEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 +VAIVTDI GTTRD + + ++G V I DTAG+RETDD+VE+ GI+R+ V AD Sbjct: 238 GDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEAD 297 Query: 301 LILLLKE----INSKKEI---SFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347 + L+L + +N K + P + I I +KSDL++ + +S+ T Sbjct: 298 VALVLVDPREGVNDKTRAILDALPPELKRIEIHSKSDLHAHAAGGFGTGAETVIALSAKT 357 Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG---LDI 404 G+GL+ L + + + + + RH+ L L +A+L CG +++ Sbjct: 358 GDGLDALKRTLLREAGWQGEGEGLFL-ARTRHVNALKAAQEELSLAAL----CGNHQIEL 412 Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 AE+LRLA V+ G+ITG + LL +IFS+FCIGK Sbjct: 413 FAEHLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448 >gi|255068623|ref|ZP_05320478.1| tRNA modification GTPase TrmE [Neisseria sicca ATCC 29256] gi|255047121|gb|EET42585.1| tRNA modification GTPase TrmE [Neisseria sicca ATCC 29256] Length = 454 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 165/458 (36%), Positives = 257/458 (56%), Gaps = 22/458 (4%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+ + TI A++T + +IRLSG + + + + K P PR A F G DG+ Sbjct: 1 MSASQPTIAAIATAPGRGGVGVIRLSGKNLLPLAQTLSGGKTPKPRTALYTDFLGGDGQP 60 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D G+L+ F +P SFTGED E HG V++ +L ++ R+A PGEF++RAF N Sbjct: 61 IDNGILLYFAAPASFTGEDVIELQGHGSPVVMDMLLSRCLEL-GARMAEPGEFTKRAFLN 119 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AES+ADLI + ++ R+++ + G S + +D L +R +EA LDF E Sbjct: 120 NKLDLAQAESVADLIDASSKSAARMALRSLKGAFSQHIHELVDDLITLRMLVEATLDFPE 179 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E D+ + + + L+ + + ++ + G I+R G +V++G N GKSSL NALA Sbjct: 180 E-DIDFLEAADARGKLQALQGRLKTVLASAEQGAILREGMNVVLVGAPNVGKSSLLNALA 238 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 D+AIVTDI GTTRD + + L+G V I DTAG+RETDD+VE+ GI+R+ V AD Sbjct: 239 GDDIAIVTDIAGTTRDTVREQITLDGVPVHIIDTAGLRETDDVVEQIGIERSRKAVSEAD 298 Query: 301 LILLL----KEINSKKEI---SFPKNIDFIFIGTKSDLYS-TYTEEYDHL---------- 342 + L+L + +N+K + S P+ + I I K+DL D L Sbjct: 299 VALILIDPREGVNAKTQAILNSLPEGLKKIEIHNKADLTGEPVAVRSDGLAQTGAETVIS 358 Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402 +S+ TG GL+ L + + + + + + + RHL L + LE A+L + + + Sbjct: 359 LSAKTGAGLDLLKHALLQEVGWQGESESLFL-ARSRHLNALHEAETELENAALCDNNQ-I 416 Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++ AE+LRLA + +ITG + LL +IFS+FCIGK Sbjct: 417 ELFAEHLRLAQNACSEITGEFTADDLLGVIFSRFCIGK 454 >gi|51598233|ref|YP_072424.1| tRNA modification GTPase TrmE [Yersinia pseudotuberculosis IP 32953] gi|186897489|ref|YP_001874601.1| tRNA modification GTPase TrmE [Yersinia pseudotuberculosis PB1/+] gi|81638080|sp|Q663S6|MNME_YERPS RecName: Full=tRNA modification GTPase mnmE gi|254811499|sp|B2K868|MNME_YERPB RecName: Full=tRNA modification GTPase mnmE gi|51591515|emb|CAH23187.1| putative thiophene and furan oxidation protein [Yersinia pseudotuberculosis IP 32953] gi|186700515|gb|ACC91144.1| tRNA modification GTPase TrmE [Yersinia pseudotuberculosis PB1/+] Length = 454 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 164/454 (36%), Positives = 249/454 (54%), Gaps = 23/454 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + I+R+SG + +V + K P PR A F +DG LD+G+ Sbjct: 5 DTIVAQATPPGRGGVGILRVSGRAASEVAHAVLGKL-PKPRYADYLPFKDVDGSTLDQGI 63 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + FP P SFTGED E HGG +++ +L+ + +P LR+A PGEFS RAF N K+DL Sbjct: 64 ALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILALPGLRIARPGEFSERAFLNDKLDL 123 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E R ++ + G S+ Q ++ LTH+R ++EA +DF +EE + Sbjct: 124 AQAEAIADLIDASSEQAARSAVNSLQGAFSARIHQLVEALTHLRIYVEAAIDFPDEE-ID 182 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S ++ + + D+ ++ + G ++R G K+VI G NAGKSSL NALA ++ A Sbjct: 183 FLSDGKIEGQLNGVMADLEQVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAA 242 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTDI GTTRDVL + ++G + I DTAG+RE +D VE+ GI+R + E+E AD +L + Sbjct: 243 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREANDEVERIGIERAWNEIEQADRVLFM 302 Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYS---TYTEEYDH---LISSFTG 348 + + P + + K+D+ T+ H +S+ TG Sbjct: 303 VDGTTTDATEPAAIWPEFMARLPATLPITVVRNKADITGETLGLTKVNGHSLIRLSARTG 362 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIA 406 EG++ L + +K + + +RHL L R+L L G +++A Sbjct: 363 EGIDLLRDHLKQSMGFT-SNTEGGFLARRRHLQALETAARHLVQGHEQLVSAYAG-ELLA 420 Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E LRLA SL +ITG + LL IFS FCIGK Sbjct: 421 EELRLAQQSLSEITGEFSSDDLLGRIFSSFCIGK 454 >gi|332288923|ref|YP_004419775.1| tRNA modification GTPase TrmE [Gallibacterium anatis UMN179] gi|330431819|gb|AEC16878.1| tRNA modification GTPase TrmE [Gallibacterium anatis UMN179] Length = 454 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 172/466 (36%), Positives = 263/466 (56%), Gaps = 43/466 (9%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63 EKETI A +T + I+R+SGP QV + + K PR A+ F +DG +LD+ Sbjct: 3 EKETIVAQATPPGRGGVGILRVSGPLSEQVAKEVLGKTLK-PRFANYLPFKDIDGSVLDQ 61 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 G+ + F +P SFTGED E HGG +++ +L+ + ++ +RLA PGEFS +AF N KI Sbjct: 62 GIALFFKAPNSFTGEDVLELQGHGGQVILDLLLKRILQIKGIRLARPGEFSEQAFLNDKI 121 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL +AE++ADLI + +E R +++ + GE S+ Q +D+L ++R+++EA +DF +EE Sbjct: 122 DLAQAEAIADLIDASSEQAARSALKSLQGEFSTKVHQLVDELIYLRTYVEAAIDFPDEE- 180 Query: 184 VQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 + + ++ LN I+ ++ SQ K G ++R G K+VI G NAGKSSL NALA Sbjct: 181 IDFLADGKIEAHLNQIIAKVAEVQ---SQAKQGSLLREGMKVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 +D AIVTDI GTTRDVL + L+G + I DTAG+R D VE+ GI+R + E++ AD Sbjct: 238 GRDAAIVTDIAGTTRDVLREHIHLDGMPLHIIDTAGLRTATDEVERIGIERAWQEIDQAD 297 Query: 301 LILLLKEINSKKEI-----------SFPKNIDFIFIGTKSDL------------YSTYTE 337 +L + + + E P +I I K+D+ Y+T T Sbjct: 298 RVLFMLDSTTTDETLPEKIWPEFMSRLPPSIPVTIIRNKADISGEAEGIRTENGYTTIT- 356 Query: 338 EYDHLISSFTGEGLEELINKIK-SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--S 394 +S+ T +G++ L +K SI + F + +RHL L Q ++L+ Sbjct: 357 -----LSAKTQQGIQLLKAHLKESIGYQTVTEGGFL--ARRRHLEALEQAAQHLQQGHIQ 409 Query: 395 LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L + G +++AE L++A +L +ITG + LL IFS FCIGK Sbjct: 410 LTQFYAG-ELLAEELKMAQNALSEITGQFTSDDLLGNIFSSFCIGK 454 >gi|304398073|ref|ZP_07379948.1| tRNA modification GTPase TrmE [Pantoea sp. aB] gi|304354359|gb|EFM18731.1| tRNA modification GTPase TrmE [Pantoea sp. aB] Length = 454 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 165/459 (35%), Positives = 252/459 (54%), Gaps = 24/459 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+H +TI A +T + I+R+SG +V + K P PR A F DG + Sbjct: 1 MSH-SDTIVAQATPPGRGGVGILRVSGAQAAEVARQLLGKL-PKPRYADYLPFTDSDGSV 58 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG +++ +L+ + +P +R+A PGEFS RAF N Sbjct: 59 LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRIVALPGVRIAQPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + +E R ++ + G S+ ++ LTH+R ++EA +DF + Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSAVNSLQGAFSTRINHLVEALTHLRIYVEAAIDFPD 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + S + + + D+ + ++ + G ++R G K+VI G NAGKSSL NALA Sbjct: 179 EE-IDFLSDGRIEAQLNTVIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 +D AIVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+E AD Sbjct: 238 GRDAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 297 Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDH---LI 343 +L + + + P + + K+D+ S TE H + Sbjct: 298 RVLFMVDGTTTDATEAAAIWPDFVSRLPPELPITVVRNKADVTSEPPGLTEINGHSLIRL 357 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401 S+ T EG++EL + +K + + + +RHL L +L+ A L G Sbjct: 358 SARTSEGVDELRDHLKQSMGFA-GNMEGGFLARRRHLQALELAAMHLQQGRAQLLGARAG 416 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LR+A +L +ITG + LL IFS FCIGK Sbjct: 417 -ELLAEELRVAQQALSEITGEFTSDDLLGRIFSSFCIGK 454 >gi|264680930|ref|YP_003280840.1| tRNA modification GTPase TrmE [Comamonas testosteroni CNB-2] gi|262211446|gb|ACY35544.1| tRNA modification GTPase TrmE [Comamonas testosteroni CNB-2] Length = 475 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 168/478 (35%), Positives = 252/478 (52%), Gaps = 42/478 (8%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 + + I A++T A+ I+R+SG + +C K+ PR+A+ F G Sbjct: 2 LPRHNDPIAAIATAPGRGAVGIVRVSGKGIAALVRTLCGKELK-PREATYLPFRDAGGSP 60 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPN---------LRLA 108 +D GL I FP P S+TGED E HGG V+ +L E A+ N LRLA Sbjct: 61 IDHGLAIYFPGPHSYTGEDVLELQAHGGPVVLQLLLARCLEAAQSANEDGKPVLTGLRLA 120 Query: 109 NPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHI 168 PGEF+ RAF N KIDL +AE++ADLI + TE R + +SG S D L H+ Sbjct: 121 QPGEFTERAFLNDKIDLAQAEAIADLIDASTEAAARSASRSLSGAFSQEIHVLRDALVHL 180 Query: 169 RSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHS 228 R +EA LDF EEE + + + L++ +++ +++ G ++R G K+VI G Sbjct: 181 RMLVEATLDFPEEE-IDFLQKADAFGQLERLRHQVTAVLARAHQGALLREGIKVVIAGQP 239 Query: 229 NAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEG 288 NAGKSSL NALA ++AIVT I GTTRD + + +EG + + DTAG+R++DD VE+ G Sbjct: 240 NAGKSSLLNALAGAELAIVTPIAGTTRDKVQQTIQIEGVPLHVIDTAGLRDSDDEVERIG 299 Query: 289 IKRTFLEVENADLILLLKEINSKKEIS---------------FPKNIDFIFIGTKSDL-- 331 I R + E+ AD +L L ++ ++ P + I + K+D+ Sbjct: 300 IARAWDEIAAADAVLFLHDLTRVEQADYAAADADIARTLQDKLPAQVPVIHVWNKTDMAA 359 Query: 332 ---YSTYTEEYDH---LISSFTGEGLEELINKIKSILSNKFKKLPFSIP-SHKRHLYHLS 384 S +T + + +S+ TG+GL+ L ++ + ++ P + + RH+ L Sbjct: 360 ADVQSRHTAQLNAEQIALSARTGDGLDALRKRLLEVAG--WQSAPEGLYLARARHVEALQ 417 Query: 385 QTVRYLEMA--SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +LEMA L + LD++AE LRLA +SL ITG + LL +IFS FCIGK Sbjct: 418 AVDAHLEMADEQLAAQSAHLDLLAEELRLAQLSLNSITGEFSSDDLLGVIFSSFCIGK 475 >gi|319775065|ref|YP_004137553.1| tRNA modification GTPase mnmE [Haemophilus influenzae F3047] gi|317449656|emb|CBY85862.1| tRNA modification GTPase mnmE [Haemophilus influenzae F3047] Length = 452 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 167/455 (36%), Positives = 251/455 (55%), Gaps = 23/455 (5%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64 KETI A +T I I+R+SGP +V + I K P PR A F DG ILD+G Sbjct: 2 KETIVAQATAPGRGGIGILRVSGPLATKVAQAILGKC-PKPRMADYLPFKDADGTILDQG 60 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 + + F SP SFTGED E HGG V++ +L+ + ++ +RLA PGEFS +AF N K+D Sbjct: 61 IALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQIDGIRLARPGEFSEQAFLNDKLD 120 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ADLI + +E R +++ + GE S + +D + ++R+++EA +DF +EE + Sbjct: 121 LAQAEAIADLIDATSEQAVRSALKSLQGEFSKKVNELVDSVIYLRTYVEASIDFPDEE-I 179 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + ++ ++ + N + S+ K G I+R G K+VI G NAGKSSL NALA + Sbjct: 180 DFLADGKIEANLRGIINQLEDVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGHEA 239 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIVTDI GTTRDVL + ++G + I DTAG+R D VE+ GI R + E+E AD I+L Sbjct: 240 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRNATDEVERIGISRAWTEIEQADRIIL 299 Query: 305 -----------LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347 L ++ S+ P + + K DL E + +S+ T Sbjct: 300 MLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKIDLNGEQASESEQGGYQMISLSAQT 359 Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDII 405 +G++ L +K + + + + +RHL L + +L+ + L E G +++ Sbjct: 360 HDGVQLLREHLKQAMGFQ-TGMEGGFLARRRHLDALDKAAEHLQIGLVQLTEFHAG-ELL 417 Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 AE LRL L +ITG + LL IFS FCIGK Sbjct: 418 AEELRLVQSYLSEITGQFTSDDLLGNIFSSFCIGK 452 >gi|255020153|ref|ZP_05292222.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Acidithiobacillus caldus ATCC 51756] gi|254970295|gb|EET27788.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Acidithiobacillus caldus ATCC 51756] Length = 449 Score = 265 bits (676), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 155/446 (34%), Positives = 252/446 (56%), Gaps = 16/446 (3%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF-PRKASLRYFFGLDGRILDKG 64 +TI A +T + + I+RLSGP + +C++++P+ PR+A L+ F+ G LD+G Sbjct: 9 DTIVAPATAMGEAGVGILRLSGPRALAIARALCRRQRPWEPRRAYLQRFYDDRGGALDQG 68 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 +++ FP+P SFTGED E HG V+ +L++ A+ R A PGEFS RAF NG++D Sbjct: 69 IVLYFPAPNSFTGEDVVELQGHGSPLVLQ-LLQQSARRLGARDARPGEFSERAFLNGRMD 127 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE LADLI +++E Q R ++ + G S + + + + + EA LDFSEE D+ Sbjct: 128 LAQAEGLADLIHAQSESQARAALASLEGRFSEKINELREAILQVLALCEAGLDFSEE-DL 186 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + + + + + S + Q + G + G ++ ++G N GKSSL NALA ++ Sbjct: 187 GSAHRDALEQALKTSQRRLESLLQQARQGARLARGARVALIGRPNVGKSSLLNALAGRES 246 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIVT I GTTRD++ +L + G V++ DTAG++++ D VE+EGI+R+ V ++ +LL Sbjct: 247 AIVTAIAGTTRDLVREELQIGGLTVELVDTAGLQDSADPVEREGIRRSRATVASSQWVLL 306 Query: 305 LKEINS---KKEISFPKNID---FIFIGTKSDLYS---TYTEEYDHL-ISSFTGEGLEEL 354 + + + + +D + K DL + E L +S+ TG GL+ L Sbjct: 307 VADAAAGWKSDDARILAELDSQRLTIVWNKGDLVAKAPVLPEPRPQLVVSARTGAGLDAL 366 Query: 355 INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASV 414 +++ L + PFS + RH++ L + L A+ +++AE LR A Sbjct: 367 RMELQRSL-GAVEAAPFS--ARNRHVHALEECGNALTEAATALSMGNEELLAECLRAAGA 423 Query: 415 SLGKITGCVDVEQLLDIIFSKFCIGK 440 SL +TG +DVE++L IFS+FCIGK Sbjct: 424 SLATVTGAMDVEEILGAIFSQFCIGK 449 >gi|161869216|ref|YP_001598382.1| tRNA modification GTPase TrmE [Neisseria meningitidis 053442] gi|205415782|sp|A9M0N5|MNME_NEIM0 RecName: Full=tRNA modification GTPase mnmE gi|161594769|gb|ABX72429.1| thiophene and furan oxidation protein [Neisseria meningitidis 053442] gi|261393317|emb|CAX50949.1| tRNA modification GTPase TrmE [Neisseria meningitidis 8013] gi|308390087|gb|ADO32407.1| tRNA modification GTPase TrmE [Neisseria meningitidis alpha710] gi|325129416|gb|EGC52248.1| tRNA modification GTPase TrmE [Neisseria meningitidis OX99.30304] Length = 448 Score = 265 bits (676), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 166/456 (36%), Positives = 254/456 (55%), Gaps = 24/456 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+ TI AV+T + +IR+SG + + + +C K P PR A+ F DG+ Sbjct: 1 MSDNVPTIAAVATAPGRGGVGVIRISGKNLLPMAQALCGKT-PKPRVATYADFTDADGQA 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D GLL+ F +P SFTGED E HGG V++ +L ++ RLA PGEF++RAF N Sbjct: 60 IDSGLLLFFAAPASFTGEDVIELQGHGGPVVMDMLLNRCLEL-GARLAEPGEFTKRAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE +ADLI + + RL++ + G+ S ++ L +R +EA LDF E Sbjct: 119 DKLDLAQAEGVADLIDASSRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEATLDFPE 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E D+ + + + L+ + ++ + G I+R G +V++G N GKSSL NALA Sbjct: 179 E-DIDFLEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 +VAIVTDI GTTRD + + ++G V I DTAG+RETDD+VE+ GI+R+ V AD Sbjct: 238 GDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEAD 297 Query: 301 LILLLKE----INSKKEI---SFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347 + L+L + +N K + P + I I +KSDL++ + +S+ T Sbjct: 298 VALVLVDPREGLNEKTRAILDALPSELKRIEIHSKSDLHAHAAGGFGTGAETVIALSAKT 357 Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG---LDI 404 G+GL+ L + + + + + RH+ L L +A+L CG +++ Sbjct: 358 GDGLDALKRTLLREAGWQGEGEGLFL-ARTRHVNALKAAQEELSLAAL----CGNHQIEL 412 Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 AE+LRLA V+ G+ITG + LL +IFS+FCIGK Sbjct: 413 FAEHLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448 >gi|317494662|ref|ZP_07953074.1| tRNA modification GTPase TrmE [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917264|gb|EFV38611.1| tRNA modification GTPase TrmE [Enterobacteriaceae bacterium 9_2_54FAA] Length = 454 Score = 265 bits (676), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 165/456 (36%), Positives = 253/456 (55%), Gaps = 23/456 (5%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63 + +TI A +T + I+R+SG +V + K P PR A F DG +LD+ Sbjct: 3 QSDTIVAQATPPGRGGVGILRISGRQAEEVAMALLGKL-PKPRYADYLPFKDADGSVLDQ 61 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 G+ + FP P SFTGED E HGG +++ +L+ + MPN+R+A PGEFS RAF N K+ Sbjct: 62 GIALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILLMPNVRIARPGEFSERAFLNDKL 121 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL +AE++ADLI + +E R ++ + G S+ Q ++ LTH+R F+EA +DF +EE Sbjct: 122 DLAQAEAIADLIDASSEQAARSAVNSLQGAFSNRVNQLVEALTHLRIFVEAAIDFPDEE- 180 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 + S ++ + + ++ + ++ + G ++R G K+VI G NAGKSSL NALA ++ Sbjct: 181 IDFLSDGKIEAQLNGVMGELQAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGRE 240 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303 AIVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+E AD +L Sbjct: 241 AAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWNEIEQADRVL 300 Query: 304 LLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYS-----TYTEEYDHL-ISSF 346 + + + I PK + + K+D+ + Y + +S+ Sbjct: 301 FMVDGTTTDAIEPATIWPEFMARLPKTLPITVVRNKADVTGETLGLSEVNGYSLIRLSAR 360 Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDI 404 TGEG++ L + +K + + + +RHL L +LE L G ++ Sbjct: 361 TGEGIDVLRDHLKQSMGFT-SNMEGGFLARRRHLQALETAAMHLEQGKEQLLSAYAG-EL 418 Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +AE LRLA +L +ITG + LL IFS FCIGK Sbjct: 419 LAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454 >gi|152972614|ref|YP_001337760.1| tRNA modification GTPase TrmE [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|166200482|sp|A6TG09|MNME_KLEP7 RecName: Full=tRNA modification GTPase mnmE gi|150957463|gb|ABR79493.1| tRNA modification GTPase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 454 Score = 265 bits (676), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 163/459 (35%), Positives = 254/459 (55%), Gaps = 24/459 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+H +TI A +T + I+R+SG V + + K P PR A F +DG Sbjct: 1 MSH-NDTIVAQATPPGRGGVGILRISGLKARDVAQAVLGKL-PKPRYADYLPFNDVDGTP 58 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG +++ +L+ + +P LR+A PGEFS RAF N Sbjct: 59 LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIARPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + +E R ++ + G S+ ++ LTH+R ++EA +DF + Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + S ++ + + D+ + ++ + G ++R G K+VI G NAGKSSL NALA Sbjct: 179 EE-IDFLSDGKIEAQLNEVMADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + ++G + I DTAG+R+ +D VE+ GI+R + E+ AD Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDANDEVERIGIERAWQEIAQAD 297 Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTY---TEEYDH---LI 343 +L + + + + P + + K+D+ +E H + Sbjct: 298 RVLFMVDGTTTSAVDPAEIWPDFIERLPAKLPITVVRNKADVTGEALGISEVNGHSLIRL 357 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401 S+ TG+G+E L N +K + + + +RHL L + +L+ A L G Sbjct: 358 SARTGDGVEVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEEAANHLQQGKAQLLGAWAG 416 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LRLA +L +ITG + LL IFS FCIGK Sbjct: 417 -ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454 >gi|87198163|ref|YP_495420.1| tRNA modification GTPase TrmE [Novosphingobium aromaticivorans DSM 12444] gi|123491120|sp|Q2GC37|MNME_NOVAD RecName: Full=tRNA modification GTPase mnmE gi|87133844|gb|ABD24586.1| tRNA modification GTPase trmE [Novosphingobium aromaticivorans DSM 12444] Length = 437 Score = 265 bits (676), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 167/450 (37%), Positives = 240/450 (53%), Gaps = 30/450 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFF-GLDGRILDKG 64 +TIFA+S+G P+ I +IR+SGP + + P PR+A+L DG LD+ Sbjct: 3 DTIFALSSGQPPAGIGVIRISGPGAGAALSSLAGRL-PSPRRATLATLADPRDGTHLDRT 61 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 +++ P P + TGED AE H+HGG AV+ + L+ +P LR A PGEF+RRAF NG+ID Sbjct: 62 MVLWLPGPATATGEDCAELHLHGGRAVIAAVEAALSSLPGLRRARPGEFTRRAFANGRID 121 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L EAE LADL+S+ETE+QRR ++ G LS +W L I + +EA LDFS+E+DV Sbjct: 122 LAEAEGLADLLSAETELQRRTALAMAEGALSREVDEWRTTLLQISARLEAALDFSDEDDV 181 Query: 185 QNFSSKEVLN--------DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 + + D + L +++ + + + E ++ G+++V+ G NAGKS+LF Sbjct: 182 GAGDGTQRASLLPPHFAADCISLACSLNTWLDRPR-AEPLKEGFRVVLAGPPNAGKSTLF 240 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLE 295 NAL + + AI PGTTRD+LT L+G DTAG+R E +E+ GI R Sbjct: 241 NALVEHEAAITAAEPGTTRDLLTHAAALDGVPFTFVDTAGLRDEGAGEIERIGIARARAA 300 Query: 296 VENADLILLLKEINSKKEISFPKNIDFIFIGTKS-DLYSTYTEEYDHLISSFTGEGL--- 351 E ADLIL L E P I ++ D + + +S+ TGEG+ Sbjct: 301 AEKADLILWL-----GPEGLGPAGRTLWEIAARADDPGAGRKSQCAFHLSAVTGEGMAAF 355 Query: 352 -EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLR 410 LI +S L P ++R HLS+ R LE A+ + + AENLR Sbjct: 356 RSALIAHARSAL-----PAPGEAALNQRQHTHLSEVARALEDAAAEQDPL---LAAENLR 407 Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L L + G E +LD +F +FCIGK Sbjct: 408 LGRRGLDALVGRTGTEDMLDTLFGRFCIGK 437 >gi|85712623|ref|ZP_01043670.1| tRNA modification GTPase [Idiomarina baltica OS145] gi|85693614|gb|EAQ31565.1| tRNA modification GTPase [Idiomarina baltica OS145] Length = 467 Score = 265 bits (676), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 161/453 (35%), Positives = 249/453 (54%), Gaps = 21/453 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 ++I A +T + I+R+SGP QV + P PRKA F+ +G +LD+G+ Sbjct: 18 DSIVAQATPPGRGGVGIVRVSGPQAKQVASALIGHCPP-PRKAEYVPFYDKEGHLLDEGI 76 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + F P SFTGED E HGG +++ I++ + ++P++R A PGEFS RAF N K+DL Sbjct: 77 ALFFKGPNSFTGEDVLELQGHGGPVLIDMIIKAILELPDIRPARPGEFSERAFLNDKLDL 136 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E + +++ + GE S +D + H+R ++EA +DF +EE + Sbjct: 137 TQAEAIADLIDTNSEQAAKAALQSLKGEFSHKIDVLVDAVIHLRMYVEAAIDFPDEE-ID 195 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S +V ND+ + + + Q K G ++R G +IVI G NAGKSSL NALA ++ A Sbjct: 196 FLSDGKVANDLAEIIDQLFHIEQQAKQGTLMREGMRIVIAGRPNAGKSSLLNALAGRESA 255 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVT+I GTTRDVL + ++G + I DTAG+R++ D VE+ GI+R + E+ AD +L + Sbjct: 256 IVTEIAGTTRDVLREHIQIDGMPLHIIDTAGLRDSPDQVERIGIERAWDEIRQADRVLFM 315 Query: 306 KEINSKKEI-----------SFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFTG 348 + I P ++ F I K DL T +H +S+ TG Sbjct: 316 VDSQETSAIHPDDIWPEFFAQLPDDMPFTVIRNKIDLTQENTGLTEHNGIPVIQLSAKTG 375 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407 G+E+L +K + S + +RHL L + +L + + E + +++AE Sbjct: 376 HGIEQLREHLKHCVGYSATS-EGSFMARRRHLDALEKAKSHLLLGQEHLELNLAGELLAE 434 Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LRL L +ITG + LL IF FCIGK Sbjct: 435 ELRLTQQHLNEITGEFTSDDLLGQIFGSFCIGK 467 >gi|260774975|ref|ZP_05883875.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio coralliilyticus ATCC BAA-450] gi|260609065|gb|EEX35224.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio coralliilyticus ATCC BAA-450] Length = 453 Score = 265 bits (676), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 167/454 (36%), Positives = 250/454 (55%), Gaps = 23/454 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 ETI A +T + IIR+SGP +V + K+ PR A F DG LD+G+ Sbjct: 4 ETIVAQATAPGRGGVGIIRVSGPLAAKVASEVTGKEL-RPRYAEYLSFTAQDGTQLDQGI 62 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + FP+P SFTGED E HGG V++ +++ + ++P +R A PGEFS RAF N K+DL Sbjct: 63 ALYFPNPNSFTGEDVLELQGHGGPVVMDMLIKRILQIPGIRTARPGEFSERAFLNDKLDL 122 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E + +++ + G S+ ++ L H+R ++EA +DF EEE + Sbjct: 123 AQAEAIADLIDASSEQAAKSALKSLQGAFSNRIQTLVESLIHLRIYVEAAIDFPEEE-ID 181 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 + +V D+ + +++++ + G I+R G K+VI G NAGKSSL NAL+ K+ A Sbjct: 182 FLADGKVSADLQTIIDNLTAVRKEATQGAIMREGMKVVIAGRPNAGKSSLLNALSGKESA 241 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTDI GTTRDVL + ++G + I DTAG+R+ D VEK GI+R + E+E AD +L + Sbjct: 242 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVEKIGIERAWEEIEQADRVLFM 301 Query: 306 -----KEINSKKEI------SFPKNIDFIFIGTKSDLYSTYTEEYDHL-------ISSFT 347 + KEI P NI I K D + T H+ +S+ T Sbjct: 302 VDGTTTDATDPKEIWPDFVDRLPSNIGMTVIRNKVD-QTDETLGICHVNDPTLIRLSART 360 Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIA 406 G+G+E L +K + + +RHL L + +L++ E +I+A Sbjct: 361 GQGVESLRTHLKECMGFAGGH-EGGFMARRRHLEALEKAAEHLDIGQQQLEGYMAGEILA 419 Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E LR+A L +ITG + LL IFS FCIGK Sbjct: 420 EELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 453 >gi|229846059|ref|ZP_04466171.1| tRNA modification GTPase TrmE [Haemophilus influenzae 7P49H1] gi|229811063|gb|EEP46780.1| tRNA modification GTPase TrmE [Haemophilus influenzae 7P49H1] Length = 452 Score = 265 bits (676), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 169/455 (37%), Positives = 255/455 (56%), Gaps = 23/455 (5%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64 KETI A +T I I+R+SGP +V + I K P PR A F DG ILD+G Sbjct: 2 KETIVAQATAPGRGGIGILRVSGPLATKVAQAILGKC-PKPRMADYLPFKDADGTILDQG 60 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 + + F SP SFTGED E HGG V++ +L+ + ++ +RLA PGEFS +AF N K+D Sbjct: 61 IALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQIDGIRLARPGEFSEQAFLNDKLD 120 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ADLI + +E R +++ + GE S +D + ++R+++EA +DF +EE + Sbjct: 121 LAQAEAIADLIDATSEQAVRSALKSLQGEFSKKVNALVDSVIYLRTYVEASIDFPDEE-I 179 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + ++ ++ + N + S+ K G I+R G K+VI G NAGKSSL NALA ++ Sbjct: 180 DFLADGKIEANLRGIINQLEDVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREA 239 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIVTDI GTTRDVL + ++G + I DTAG+R+ D VE+ GI R + E+E AD I+L Sbjct: 240 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDATDEVERIGISRAWTEIEQADRIIL 299 Query: 305 -----------LKEINSKKEISFPKNIDFIFIGTKSDL---YSTYTEEYDHLI---SSFT 347 L ++ S+ P + + K DL ++ +EE + I S+ T Sbjct: 300 MLDSSDPESVDLSKVRSEFLAKLPSTLPVTIVRNKIDLNGEQASESEEGGYQIISLSAQT 359 Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDII 405 +G++ L +K + + + + +RHL L + +L+ + L E G +++ Sbjct: 360 HDGVKLLREHLKQAMGFQ-TGIEGGFLARRRHLDALEKAAEHLQIGLVQLTEFHAG-ELL 417 Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 AE LRL L +ITG LL IFS FCIGK Sbjct: 418 AEELRLVQSYLSEITGQFTSNDLLGNIFSSFCIGK 452 >gi|329123024|ref|ZP_08251595.1| tRNA modification GTPase TrmE [Haemophilus aegyptius ATCC 11116] gi|327471955|gb|EGF17395.1| tRNA modification GTPase TrmE [Haemophilus aegyptius ATCC 11116] Length = 461 Score = 265 bits (676), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 167/455 (36%), Positives = 253/455 (55%), Gaps = 23/455 (5%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64 KETI A +T I I+R+SGP +V + I K P PR A F DG ILD+G Sbjct: 11 KETIVAQATAPGRGGIGILRVSGPLATKVAQAILGKC-PKPRMADYLPFKDADGTILDQG 69 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 + + F SP SFTGED E HGG V++ +L+ + ++ +RLA PGEFS +AF N K+D Sbjct: 70 IALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQIDGIRLARPGEFSEQAFLNDKLD 129 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ADLI + +E R +++ + GE S + +D + ++R+++EA +DF +EE + Sbjct: 130 LAQAEAIADLIYATSEQAVRSALKSLQGEFSKKVNELVDSVIYLRTYVEASIDFPDEE-I 188 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + ++ ++ + N + S+ K G I+R G K+VI G NAGKSSL NALA ++ Sbjct: 189 DFLADGKIEANLRGIINQLEDVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREA 248 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIVTDI GTTRDVL + ++G + I DTAG+R+ D VE+ GI R + E+E AD I+L Sbjct: 249 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAIDEVERIGISRAWTEIEQADRIIL 308 Query: 305 -----------LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347 L ++ S+ P + + K DL E + +S+ T Sbjct: 309 MLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKIDLNGEQASESEQGGYQMISLSAHT 368 Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDII 405 +G++ L +K + + + + +RHL L + +L+ + L E G +++ Sbjct: 369 HDGVQLLREHLKQAMGFQ-AGMEGGFLARRRHLDALDKAAEHLQIGLVQLTEFHEG-ELL 426 Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 AE LRL L +ITG + LL IFS FCIGK Sbjct: 427 AEELRLVQSYLSEITGQFTSDDLLGNIFSSFCIGK 461 >gi|240013240|ref|ZP_04720153.1| tRNA modification GTPase TrmE [Neisseria gonorrhoeae DGI18] gi|240015686|ref|ZP_04722226.1| tRNA modification GTPase TrmE [Neisseria gonorrhoeae FA6140] gi|240079821|ref|ZP_04724364.1| tRNA modification GTPase TrmE [Neisseria gonorrhoeae FA19] gi|240116977|ref|ZP_04731039.1| tRNA modification GTPase TrmE [Neisseria gonorrhoeae PID1] gi|240120311|ref|ZP_04733273.1| tRNA modification GTPase TrmE [Neisseria gonorrhoeae PID24-1] gi|268595964|ref|ZP_06130131.1| tRNA modification GTPase mnmE [Neisseria gonorrhoeae FA19] gi|268602658|ref|ZP_06136825.1| thiophene and furan oxidation protein [Neisseria gonorrhoeae PID1] gi|268549752|gb|EEZ44771.1| tRNA modification GTPase mnmE [Neisseria gonorrhoeae FA19] gi|268586789|gb|EEZ51465.1| thiophene and furan oxidation protein [Neisseria gonorrhoeae PID1] Length = 448 Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 166/456 (36%), Positives = 254/456 (55%), Gaps = 24/456 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+ TI AV+T + +IR+SG + + + +C K P PR A+ F DG+ Sbjct: 1 MSDNVPTIAAVATAPGRGGVGVIRISGKNLLPMAQALCGKT-PEPRVATYADFTDADGQA 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D GLL+ F +P SFTGED E HGG V+ +L ++ RLA PGEF++RAF N Sbjct: 60 IDSGLLLFFAAPASFTGEDVIELQGHGGPVVMEMLLNRCLEL-GARLAEPGEFTKRAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE +ADLI + RL++ + G+ S ++ L +R +EA LDF E Sbjct: 119 DKLDLAQAEGVADLIDASGRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEAALDFPE 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E D+ + + + L+ + ++ + G I+R G +V++G N GKSSL NALA Sbjct: 179 E-DIDFLEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 +VAIVTDI GTTRD + + ++G V I DTAG+RETDD+VE+ GI+R+ V AD Sbjct: 238 GDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEAD 297 Query: 301 LILLLKE----INSKKEI---SFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347 + L+L + +N K + + P ++ I I +KSDL++ + +S+ T Sbjct: 298 VALVLVDPREGLNEKTRMILDTLPSDLKRIEIHSKSDLHAHAAGGFGTGAETVIALSAKT 357 Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG---LDI 404 G+GL+ L + + + + + RH+ L L +A+L CG +++ Sbjct: 358 GDGLDALKRTLLCEAGWQGESEGLFL-ARTRHVNALKAAQEELSLAAL----CGNHQIEL 412 Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 AE+LRLA V+ G+ITG + LL +IFS+FCIGK Sbjct: 413 FAEHLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448 >gi|261341633|ref|ZP_05969491.1| hypothetical protein ENTCAN_08099 [Enterobacter cancerogenus ATCC 35316] gi|288315988|gb|EFC54926.1| tRNA modification GTPase TrmE [Enterobacter cancerogenus ATCC 35316] Length = 454 Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 164/459 (35%), Positives = 254/459 (55%), Gaps = 24/459 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+H +TI A +T + I+R+SG +V E + K P PR A F DG Sbjct: 1 MSH-NDTIVAQATPPGRGGVGILRISGLKAREVAEAVLGKL-PKPRYADYLPFKDSDGTP 58 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG +++ +L+ + +P LR+A PGEFS RAF N Sbjct: 59 LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGLRIAKPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + +E R ++ + G S+ ++ LTH+R ++EA +DF + Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + S ++ + + D+ + ++ + G ++R G K+VI G NAGKSSL NALA Sbjct: 179 EE-IDFLSDGKIEAQLNEVMKDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + ++G + I DTAG+R+ D VE+ GI+R + E+E AD Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQAD 297 Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTY---TEEYDH---LI 343 +L + + + + P + + K+D+ ++ H + Sbjct: 298 RVLFMVDGTTTDAVDPADIWPDFIARLPAKLPITVVRNKADVTGETLGISDVNGHSLIRL 357 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401 S+ TGEG+++L N +K + + + +RHL L + +L A L G Sbjct: 358 SARTGEGVDDLRNHLKQSMGFD-TSMEGGFLARRRHLQALEEAANHLVQGKAQLIGAWAG 416 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LRLA +L +ITG + LL IFS FCIGK Sbjct: 417 -ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454 >gi|299530922|ref|ZP_07044336.1| tRNA modification GTPase TrmE [Comamonas testosteroni S44] gi|298721143|gb|EFI62086.1| tRNA modification GTPase TrmE [Comamonas testosteroni S44] Length = 475 Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 168/478 (35%), Positives = 252/478 (52%), Gaps = 42/478 (8%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 + + I A++T A+ I+R+SG + +C K+ PR+A+ F G Sbjct: 2 LPRHNDPIAAIATAPGRGAVGIVRVSGKGIAALVRALCGKELK-PREATYLPFRDAGGSP 60 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPN---------LRLA 108 +D GL I FP P S+TGED E HGG V+ +L E A+ N LRLA Sbjct: 61 IDHGLAIYFPGPHSYTGEDVLELQAHGGPVVLQLLLARCLEAAQSTNEDGKPVLTGLRLA 120 Query: 109 NPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHI 168 PGEF+ RAF N KIDL +AE++ADLI + TE R + +SG S D L H+ Sbjct: 121 QPGEFTERAFLNDKIDLAQAEAIADLIDASTEAAVRSASRSLSGAFSQEIHVLRDALVHL 180 Query: 169 RSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHS 228 R +EA LDF EEE + + + L++ +++ +++ G ++R G K+VI G Sbjct: 181 RMLVEATLDFPEEE-IDFLQKADAFGQLERLRHQVTAVLARAHQGALLREGIKVVIAGQP 239 Query: 229 NAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEG 288 NAGKSSL NALA ++AIVT I GTTRD + + +EG + + DTAG+R++DD VE+ G Sbjct: 240 NAGKSSLLNALAGAELAIVTPIAGTTRDKVQQTIQIEGVPLHVIDTAGLRDSDDEVERIG 299 Query: 289 IKRTFLEVENADLILLLKEINSKKEIS---------------FPKNIDFIFIGTKSDL-- 331 I R + E+ AD +L L ++ ++ P + I + K+D+ Sbjct: 300 IARAWDEIAAADAVLFLHDLTRVEQADYAAADADIARTLQDKLPAQVPVIHVWNKTDMAA 359 Query: 332 ---YSTYTEEYDH---LISSFTGEGLEELINKIKSILSNKFKKLPFSIP-SHKRHLYHLS 384 S +T + + +S+ TG+GL+ L ++ + ++ P + + RH+ L Sbjct: 360 ADVQSRHTAQLNAEQIALSARTGDGLDALRKRLLEVAG--WQSAPEGLYLARARHVEALQ 417 Query: 385 QTVRYLEMA--SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +LEMA L + LD++AE LRLA +SL ITG + LL +IFS FCIGK Sbjct: 418 AVDAHLEMADEQLAAQSAHLDLLAEELRLAQLSLNSITGEFSSDDLLGVIFSSFCIGK 475 >gi|296114112|ref|YP_003628050.1| tRNA modification GTPase TrmE [Moraxella catarrhalis RH4] gi|295921806|gb|ADG62157.1| tRNA modification GTPase TrmE [Moraxella catarrhalis RH4] Length = 466 Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 169/464 (36%), Positives = 262/464 (56%), Gaps = 37/464 (7%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66 TI A+++ + IIRLSG +++ + ++ PR A F+G +G ++D+G++ Sbjct: 10 TIAAIASPIGQGGVGIIRLSGKDAYRIGCLMTRRSNLIPRMAHFGGFYGQEG-VIDEGVI 68 Query: 67 IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126 I F +P SFTGED E HGG+ + N +L + ++ R A GEFS RAFEN KIDL+ Sbjct: 69 IYFKAPHSFTGEDVVELQGHGGMVLQNMLLARVFEL-GARQAAAGEFSYRAFENDKIDLV 127 Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186 +AE+++D IS+ + Q ++ ++GE S + +DKL H+R ++EA +DF EEEDV Sbjct: 128 QAEAISDAISATSVAQATSAIRSLTGEFSQKINELLDKLVHLRLYVEASIDFPEEEDVDF 187 Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246 + N + + + I ++ K G+++R+G +V+ G NAGKSSL N L+ + AI Sbjct: 188 LPDGIIENKLTEILSGIDRILATAKQGQLLRDGVHVVLAGKPNAGKSSLLNRLSGTERAI 247 Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306 VT+I GTTRD L L L G V ++DTAG+R+TDD VEK GIKR F + AD+++++ Sbjct: 248 VTEIAGTTRDTLEETLILNGLTVHLTDTAGLRKTDDHVEKIGIKRAFDAIRQADVLMMVY 307 Query: 307 EINSKKE-ISFPKNI---------------DFIFIGTKSDL--------YSTYTEEYDHL 342 ++ ++ + ++ + I + KSDL S T+ L Sbjct: 308 DVTTETDPLALADQLFCEGVTEDVGDIIRQKLILVANKSDLLVSKPVLQVSCETKSAPKL 367 Query: 343 --ISSFTGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLN 396 +S TGEGL+ELI IL+ K F S+ + RHL L++ Y A L Sbjct: 368 VYVSCETGEGLDELIE----ILTQKVGFHPPENSLIARTRHLDALNRAKGYAIEAYEQLT 423 Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G +++AE+LR + +LG+ITG + ++LL IFS FCIGK Sbjct: 424 IYHAG-ELVAESLRQSQQALGEITGQMSADELLGKIFSSFCIGK 466 >gi|145628055|ref|ZP_01783856.1| tRNA modification GTPase TrmE [Haemophilus influenzae 22.1-21] gi|144979830|gb|EDJ89489.1| tRNA modification GTPase TrmE [Haemophilus influenzae 22.1-21] Length = 452 Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 167/455 (36%), Positives = 252/455 (55%), Gaps = 23/455 (5%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64 KETI A +T I I+R+SGP +V + I K P PR A F DG ILD+G Sbjct: 2 KETIVAQATAPGRGGIGILRVSGPLATKVAQAILGKC-PKPRMADYLPFKDADGTILDQG 60 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 + + F SP SFTGED E HGG V++ +L+ + ++ +RLA PGEFS +AF N K+D Sbjct: 61 VALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQIDGIRLARPGEFSEQAFLNDKLD 120 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ADLI + +E R +++ + GE S +D + ++R+++EA +DF +EE + Sbjct: 121 LAQAEAIADLIDATSEQAVRSALKSLQGEFSKKVNALVDSVIYLRTYVEASIDFPDEE-I 179 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + ++ ++ + N + S+ K G I+R G K+VI G NAGKSSL NALA ++ Sbjct: 180 DFLADGKIEANLRGIINQLEDVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREA 239 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIVTDI GTTRDVL + ++G + I DTAG+R+ D VE+ GI R + E+E AD I+L Sbjct: 240 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDATDEVERIGISRAWTEIEQADRIIL 299 Query: 305 -----------LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347 L ++ S+ P + + K DL E + +S+ T Sbjct: 300 MLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKIDLNGEQASESEQGGYQIISLSAQT 359 Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDII 405 +G++ L +K + + + + +RHL L + +L+ + L E G +++ Sbjct: 360 HDGVKLLREHLKQAMGFQ-TGIEGGFLARRRHLDALEKAAEHLQIGLVQLTEFYAG-ELL 417 Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 AE LRL L +ITG + LL IFS FCIGK Sbjct: 418 AEELRLVQSYLSEITGQFTSDDLLGSIFSSFCIGK 452 >gi|59802408|ref|YP_209120.1| tRNA modification GTPase TrmE [Neisseria gonorrhoeae FA 1090] gi|194100062|ref|YP_002003202.1| tRNA modification GTPase TrmE [Neisseria gonorrhoeae NCCP11945] gi|239998058|ref|ZP_04717982.1| tRNA modification GTPase TrmE [Neisseria gonorrhoeae 35/02] gi|240112030|ref|ZP_04726520.1| tRNA modification GTPase TrmE [Neisseria gonorrhoeae MS11] gi|240124802|ref|ZP_04737688.1| tRNA modification GTPase TrmE [Neisseria gonorrhoeae SK-92-679] gi|254492836|ref|ZP_05106007.1| thiophene and furan oxidation protein [Neisseria gonorrhoeae 1291] gi|268593908|ref|ZP_06128075.1| tRNA modification GTPase mnmE [Neisseria gonorrhoeae 35/02] gi|268598084|ref|ZP_06132251.1| thiophene and furan oxidation protein [Neisseria gonorrhoeae MS11] gi|268683378|ref|ZP_06150240.1| thiophene and furan oxidation protein [Neisseria gonorrhoeae SK-92-679] gi|293397863|ref|ZP_06642069.1| tRNA modification GTPase TrmE [Neisseria gonorrhoeae F62] gi|81311136|sp|Q5F529|MNME_NEIG1 RecName: Full=tRNA modification GTPase mnmE gi|226704783|sp|B4RRB9|MNME_NEIG2 RecName: Full=tRNA modification GTPase mnmE gi|59719303|gb|AAW90708.1| putative thiophene and furan oxidation protein [Neisseria gonorrhoeae FA 1090] gi|193935352|gb|ACF31176.1| tRNA modification GTPase [Neisseria gonorrhoeae NCCP11945] gi|226511876|gb|EEH61221.1| thiophene and furan oxidation protein [Neisseria gonorrhoeae 1291] gi|268547297|gb|EEZ42715.1| tRNA modification GTPase mnmE [Neisseria gonorrhoeae 35/02] gi|268582215|gb|EEZ46891.1| thiophene and furan oxidation protein [Neisseria gonorrhoeae MS11] gi|268623662|gb|EEZ56062.1| thiophene and furan oxidation protein [Neisseria gonorrhoeae SK-92-679] gi|291611809|gb|EFF40878.1| tRNA modification GTPase TrmE [Neisseria gonorrhoeae F62] gi|317165500|gb|ADV09041.1| tRNA modification GTPase TrmE [Neisseria gonorrhoeae TCDC-NG08107] Length = 448 Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 166/456 (36%), Positives = 254/456 (55%), Gaps = 24/456 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+ TI AV+T + +IR+SG + + + +C K P PR A+ F DG+ Sbjct: 1 MSDNVPTIAAVATAPGRGGVGVIRISGKNLLPMAQALCGKT-PEPRVATYADFTDADGQA 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D GLL+ F +P SFTGED E HGG V+ +L ++ RLA PGEF++RAF N Sbjct: 60 IDSGLLLFFAAPASFTGEDVIELQGHGGPVVMEMLLNRCLEL-GARLAEPGEFTKRAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE +ADLI + RL++ + G+ S ++ L +R +EA LDF E Sbjct: 119 DKLDLAQAEGVADLIDASGRSAARLALRSLKGDFSRRIHGLVEGLITLRMLVEAALDFPE 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E D+ + + + L+ + ++ + G I+R G +V++G N GKSSL NALA Sbjct: 179 E-DIDFLEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 +VAIVTDI GTTRD + + ++G V I DTAG+RETDD+VE+ GI+R+ V AD Sbjct: 238 GDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEAD 297 Query: 301 LILLLKE----INSKKEI---SFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347 + L+L + +N K + + P ++ I I +KSDL++ + +S+ T Sbjct: 298 VALVLVDPREGLNEKTRMILDTLPSDLKRIEIHSKSDLHAHAAGGFGTGAETVIALSAKT 357 Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG---LDI 404 G+GL+ L + + + + + RH+ L L +A+L CG +++ Sbjct: 358 GDGLDALKRTLLCEAGWQGESEGLFL-ARTRHVNALKAAQEELSLAAL----CGNHQIEL 412 Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 AE+LRLA V+ G+ITG + LL +IFS+FCIGK Sbjct: 413 FAEHLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448 >gi|22127986|ref|NP_671409.1| tRNA modification GTPase TrmE [Yersinia pestis KIM 10] gi|45443733|ref|NP_995272.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Microtus str. 91001] gi|108810138|ref|YP_654054.1| tRNA modification GTPase TrmE [Yersinia pestis Antiqua] gi|108814120|ref|YP_649887.1| tRNA modification GTPase TrmE [Yersinia pestis Nepal516] gi|145601169|ref|YP_001165245.1| tRNA modification GTPase TrmE [Yersinia pestis Pestoides F] gi|150260963|ref|ZP_01917691.1| putative thiophene and furan oxidation protein [Yersinia pestis CA88-4125] gi|162421232|ref|YP_001608454.1| tRNA modification GTPase TrmE [Yersinia pestis Angola] gi|165926155|ref|ZP_02221987.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Orientalis str. F1991016] gi|165939964|ref|ZP_02228501.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Orientalis str. IP275] gi|166009545|ref|ZP_02230443.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Antiqua str. E1979001] gi|166213299|ref|ZP_02239334.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Antiqua str. B42003004] gi|167401538|ref|ZP_02307032.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167422868|ref|ZP_02314621.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425489|ref|ZP_02317242.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229839810|ref|ZP_04459969.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229841895|ref|ZP_04462051.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Yersinia pestis biovar Orientalis str. India 195] gi|229896772|ref|ZP_04511935.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Yersinia pestis Pestoides A] gi|229904660|ref|ZP_04519771.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Yersinia pestis Nepal516] gi|270488372|ref|ZP_06205446.1| tRNA modification GTPase TrmE [Yersinia pestis KIM D27] gi|294505627|ref|YP_003569689.1| tRNA modification GTPase [Yersinia pestis Z176003] gi|123073044|sp|Q1CCJ3|MNME_YERPN RecName: Full=tRNA modification GTPase mnmE gi|123245359|sp|Q1C0B3|MNME_YERPA RecName: Full=tRNA modification GTPase mnmE gi|166234833|sp|A4TSL0|MNME_YERPP RecName: Full=tRNA modification GTPase mnmE gi|254811500|sp|A9R5S1|MNME_YERPG RecName: Full=tRNA modification GTPase mnmE gi|21961132|gb|AAM87660.1|AE014013_5 GTP-binding protein [Yersinia pestis KIM 10] gi|45438603|gb|AAS64149.1| GTP-binding protein [Yersinia pestis biovar Microtus str. 91001] gi|108777768|gb|ABG20287.1| tRNA modification GTPase trmE [Yersinia pestis Nepal516] gi|108782051|gb|ABG16109.1| tRNA modification GTPase trmE [Yersinia pestis Antiqua] gi|145212865|gb|ABP42272.1| tRNA modification GTPase trmE [Yersinia pestis Pestoides F] gi|149290371|gb|EDM40448.1| putative thiophene and furan oxidation protein [Yersinia pestis CA88-4125] gi|162354047|gb|ABX87995.1| tRNA modification GTPase TrmE [Yersinia pestis Angola] gi|165912090|gb|EDR30730.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Orientalis str. IP275] gi|165922015|gb|EDR39192.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Orientalis str. F1991016] gi|165991467|gb|EDR43768.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Antiqua str. E1979001] gi|166205597|gb|EDR50077.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Antiqua str. B42003004] gi|166958260|gb|EDR55281.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048920|gb|EDR60328.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055503|gb|EDR65296.1| tRNA modification GTPase TrmE [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229678778|gb|EEO74883.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Yersinia pestis Nepal516] gi|229691234|gb|EEO83287.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Yersinia pestis biovar Orientalis str. India 195] gi|229696176|gb|EEO86223.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229700210|gb|EEO88246.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Yersinia pestis Pestoides A] gi|262363792|gb|ACY60513.1| tRNA modification GTPase [Yersinia pestis D106004] gi|262367728|gb|ACY64285.1| tRNA modification GTPase [Yersinia pestis D182038] gi|270336876|gb|EFA47653.1| tRNA modification GTPase TrmE [Yersinia pestis KIM D27] gi|294356086|gb|ADE66427.1| tRNA modification GTPase [Yersinia pestis Z176003] gi|320017433|gb|ADW01005.1| 5-methylaminomethyl-2-thiouridine-synthesizing GTPase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 454 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 164/454 (36%), Positives = 249/454 (54%), Gaps = 23/454 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + I+R+SG + +V + K P PR A F +DG LD+G+ Sbjct: 5 DTIVAQATPPGRGGVGILRVSGRAASEVAHAVLGKL-PKPRYADYLPFKDVDGSTLDQGI 63 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + FP P SFTGED E HGG +++ +L+ + +P LR+A PGEFS RAF N K+DL Sbjct: 64 ALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILALPGLRIARPGEFSERAFLNDKLDL 123 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E R ++ + G S+ Q ++ LTH+R ++EA +DF +EE + Sbjct: 124 AQAEAIADLIDASSEQAARSAVNSLQGAFSARIHQLVEALTHLRIYVEAAIDFPDEE-ID 182 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S ++ + + D+ ++ + G ++R G K+VI G NAGKSSL NALA ++ A Sbjct: 183 FLSDGKIEGQLNGVMADLEQVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAA 242 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTDI GTTRDVL + ++G + I DTAG+RE +D VE+ GI+R + E+E AD +L + Sbjct: 243 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREANDEVERIGIERAWNEIEQADRVLFM 302 Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYS---TYTEEYDH---LISSFTG 348 + + P + + K+D+ T+ H +S+ TG Sbjct: 303 VDGTTTDATEPAAIWPEFMARLPATLPITVVRNKADITGETLGLTKVNGHSLIRLSARTG 362 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIA 406 EG++ L + +K + + +RHL L R+L L G +++A Sbjct: 363 EGIDLLRDHLKQSMGFT-SNTEGGFLARRRHLQALETAARHLIQGHEQLVSAYAG-ELLA 420 Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E LRLA SL +ITG + LL IFS FCIGK Sbjct: 421 EELRLAQQSLSEITGEFSSDDLLGRIFSSFCIGK 454 >gi|309751333|gb|ADO81317.1| tRNA modification GTPase mnmE [Haemophilus influenzae R2866] Length = 461 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 167/455 (36%), Positives = 250/455 (54%), Gaps = 23/455 (5%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64 KETI A +T I I+R+SGP +V + I K P PR A F DG ILD+G Sbjct: 11 KETIVAQATAPGRGGIGILRVSGPLATKVAQAILGKC-PKPRMADYLPFKDADGTILDQG 69 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 + + F SP SFTGED E HGG V++ +L+ + ++ +RLA PGEFS +AF N K+D Sbjct: 70 IALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQIDGIRLARPGEFSEQAFLNDKLD 129 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ADLI + +E R +++ + GE S +D + ++R+++EA +DF +EE + Sbjct: 130 LAQAEAIADLIDATSEQAVRSALKSLQGEFSKKVNALVDSVIYLRTYVEASIDFPDEE-I 188 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + ++ ++ + N + S+ K G I+R G K+VI G NAGKSSL NALA + Sbjct: 189 DFLADGKIEANLRGIINQLEDVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGHEA 248 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIVTDI GTTRDVL + ++G + I DTAG+R D VE+ GI R + E+E AD I+L Sbjct: 249 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRNATDEVERIGISRAWTEIEQADRIIL 308 Query: 305 -----------LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347 L ++ S+ P + + K DL E + +S+ T Sbjct: 309 MLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKIDLNGEQASESEQGGYQIISLSAQT 368 Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDII 405 +G++ L +K + + + + +RHL L + +L+ + L E G +++ Sbjct: 369 HDGVQLLREHLKQAMGFQ-TGMEGGFLARRRHLDALDKAAEHLQIGLVQLTEFHAG-ELL 426 Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 AE LRL L +ITG + LL IFS FCIGK Sbjct: 427 AEELRLVQSYLSEITGQFTSDDLLGNIFSSFCIGK 461 >gi|322789734|gb|EFZ14900.1| hypothetical protein SINV_07474 [Solenopsis invicta] Length = 458 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 166/462 (35%), Positives = 250/462 (54%), Gaps = 49/462 (10%) Query: 19 AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD-GRILDKGLLIVFPSPESFTG 77 ++++R+SG + + + K PR+A LR G ++D GL + FP P SFTG Sbjct: 6 GVAVVRISGSRSLEALKRMTSISKLEPRRAFLRKIRDPKTGEVIDNGLCLWFPGPYSFTG 65 Query: 78 EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137 EDS EFHVHGG A++ +++ L+K+ ++ A PGEF+RRAF N K+DL E E LADLI + Sbjct: 66 EDSVEFHVHGGSAILTRLMQVLSKL-QVQPALPGEFTRRAFYNNKLDLTEVEGLADLIEA 124 Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197 ETE QR+ ++ G L LY W L+ + IEA +DF EE+++++ + + + Sbjct: 125 ETECQRKQALLQADGILRKLYDNWRKVLSESVASIEAYIDFGEEDNIESDVVQNAHHALR 184 Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257 L D+ H++ G+ GEI+RNG + VI+G N GKSSL N L +++ AIVT I GTTRDV Sbjct: 185 QLMRDLEEHLADGRRGEILRNGVRTVIVGEPNVGKSSLLNHLVQRNAAIVTPIAGTTRDV 244 Query: 258 LTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENA----------------- 299 + + ++ GY V I+DTAGI +T DIVE EG++R ENA Sbjct: 245 IELTANISGYPVLIADTAGITDDTGDIVEAEGVRRARRHAENADFVVVVVDAFKCASSGM 304 Query: 300 -------------DLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF 346 ++ LL +I ++ + D + K + +++ L S Sbjct: 305 MYEDYIREYLSSLGILELLTKIGRERYVVIANKKDLL----KEEEKRCFSDTEAILTSCR 360 Query: 347 TGEGLEELI----NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR----YLEMASLNEK 398 T +G ++L+ ++ I N + P S RH HL+Q +R Y E+ + + Sbjct: 361 TEDGFQDLLRSLTDRFSKICGNPSAESP--TISQARHRNHLAQCLRHLQSYFELCANEQH 418 Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D + I AE + A LG+ITG V ++LDIIF FCIGK Sbjct: 419 D--MAIAAEEIHKAMRELGRITGHVSTNEILDIIFKNFCIGK 458 >gi|311109664|ref|YP_003982517.1| tRNA modification GTPase TrmE [Achromobacter xylosoxidans A8] gi|310764353|gb|ADP19802.1| tRNA modification GTPase TrmE [Achromobacter xylosoxidans A8] Length = 450 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 172/438 (39%), Positives = 251/438 (57%), Gaps = 23/438 (5%) Query: 20 ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGED 79 I ++R+SG ++ + +++ PR A F G +LD+G+ I F +P S+TGED Sbjct: 19 IGVVRISGTDLSELVRRLFQREL-TPRHAHYLPFKSGAGELLDEGIAIYFRAPHSYTGED 77 Query: 80 SAEFHVHGGIAVVNGILEE-LAKMPNL--RLANPGEFSRRAFENGKIDLLEAESLADLIS 136 E HGG AV+ +LE LA +L RLA PGEF+RRAF N ++DL +AE++ADLI Sbjct: 78 VLELQGHGGPAVLRRVLESCLAAGRDLDIRLAEPGEFTRRAFLNDRMDLAQAEAVADLIE 137 Query: 137 SETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED--VQNFSSKEVLN 194 + + R +M +SG+ S+ D++ H+R +EA LDF EEE ++ + ++ L Sbjct: 138 ASSVAAARGAMASLSGDFSARVNDLSDRIIHLRMLVEATLDFPEEEIDFLEKYQARPTLE 197 Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254 L D+S I+Q + G I+R G +V+ G N GKSSL NALA D+AIVT I GTT Sbjct: 198 ---ALTADLSKLIAQARQGVILREGLHVVLAGQPNVGKSSLLNALAGDDIAIVTPIAGTT 254 Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK-------E 307 RD + ++ ++G + I DTAG+RET+D VE GI RT+ E+E AD+IL L+ E Sbjct: 255 RDKVVQEIHIDGVPLHIVDTAGLRETEDTVESIGIARTWQEIERADVILHLQDATQPGDE 314 Query: 308 INSKKEISFPKNIDFIFIGTKSDLYST-YTEEYDHL-ISSFTGEGLEELINKIKSILS-N 364 ++++ P + + K DL ST + L IS+ G GL+EL ++ I N Sbjct: 315 LDAQITARLPPRTPVLKVFNKVDLLSTPFAAGPQELGISAKRGAGLDELRAELLRIAGWN 374 Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN--EKDCGLDIIAENLRLASVSLGKITGC 422 + P+ + +RHL+ L +LE+A + + D LD+ AE LRLA SL ITG Sbjct: 375 PGGESPWL--ARERHLHALQDAAEHLELAGAHAEQDDRVLDLFAEELRLAHDSLSSITGK 432 Query: 423 VDVEQLLDIIFSKFCIGK 440 + LL IFS FCIGK Sbjct: 433 FTSDDLLGEIFSSFCIGK 450 >gi|52424535|ref|YP_087672.1| tRNA modification GTPase TrmE [Mannheimia succiniciproducens MBEL55E] gi|81387495|sp|Q65VC3|MNME_MANSM RecName: Full=tRNA modification GTPase mnmE gi|52306587|gb|AAU37087.1| ThdF protein [Mannheimia succiniciproducens MBEL55E] Length = 454 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 170/458 (37%), Positives = 259/458 (56%), Gaps = 29/458 (6%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64 KETI A +T + I+R+SGP +V + + K+ PR A+ F DG ILD+G Sbjct: 4 KETIVAQATPIGRGGVGILRVSGPLATEVAKAVVDKELK-PRMANYLPFKDEDGTILDQG 62 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 + + F SP SFTGED EF HGG V++ +L+ + ++ +RLA PGEFS +AF N K+D Sbjct: 63 IALYFKSPNSFTGEDVVEFQGHGGQVVLDLLLKRILQVKGVRLARPGEFSEQAFLNDKLD 122 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ADLI++ +E R +++ + GE S Q +D + ++R+++EA +DF +EE + Sbjct: 123 LAQAEAIADLINASSEQAARSALKSLQGEFSKKINQLVDSVIYLRTYVEAAIDFPDEE-I 181 Query: 185 QNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 + ++ LND++ + + S QG I+R G K+VI G NAGKSSL NALA Sbjct: 182 DFLADGKIEGHLNDLIGQLDKVRSEAKQGS---ILREGMKVVIAGRPNAGKSSLLNALAG 238 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 ++ AIVTDI GTTRDVL + ++G + I DTAG+R+ D VE+ GI R + E+E AD Sbjct: 239 REAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDATDEVERIGITRAWNEIEQADR 298 Query: 302 ILLL--------KEINSKKE---ISFPKNIDFIFIGTKSDLYS--TYTEEYDHL----IS 344 ++L+ K+++ K P NI + KSDL EE + +S Sbjct: 299 VILMLDSTDPDSKDLDQAKAEFLSKLPGNIPVTIVRNKSDLSGEKESIEEQEGFTVIRLS 358 Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGL 402 + T +G+ L +K + + + +RHL L +L++ L + G Sbjct: 359 AQTQQGVSLLREHLKQSMGYQ-TGTEGGFLARRRHLEALEHAAEHLQIGRVQLTQFHAG- 416 Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LR+ LG+ITG + LL IFS FCIGK Sbjct: 417 ELLAEELRIVQDYLGEITGKFTSDDLLGNIFSSFCIGK 454 >gi|213405481|ref|XP_002173512.1| tRNA modification GTPase mss1 [Schizosaccharomyces japonicus yFS275] gi|212001559|gb|EEB07219.1| tRNA modification GTPase mss1 [Schizosaccharomyces japonicus yFS275] Length = 501 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 171/484 (35%), Positives = 257/484 (53%), Gaps = 54/484 (11%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASL-RYFFGLDGRIL 61 K T++A+ST +A+++IR+SGP +V + +C P PR A+L R R + Sbjct: 26 QSKHTVYALSTAPGKAAVAVIRVSGPQASEVAKTLCGSV-PKPRMATLLRLLHPKTKRQI 84 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELA--KMPNLRLANPGEFSRRAFE 119 D+ L++ FP P SFTGED+ EFH HGG VV L +A ++P LR A GEFS++AF Sbjct: 85 DRALVLFFPGPASFTGEDTIEFHTHGGSGVVQETLTAIAETRLPALRYAERGEFSKQAFY 144 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NGK+DLL+ ESLAD+I +ET Q L+ E + + QW D + R+ +E LDFS Sbjct: 145 NGKMDLLQLESLADVIDAETAEQVYLANEDIDTQTRKRVSQWRDTILECRALLETLLDFS 204 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 EE V+ S+ VL+ L ND+ S + + E R G + V+ G +NAGKSSL N+L Sbjct: 205 EEHSVEEDFSRAVLDKTRSLLNDMHSFQIRQRTREAFRFGTQAVLFGPTNAGKSSLVNSL 264 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD--DIVEKEGIKRTFLEVE 297 A++ VA+V+D PGTTRD L + L++ GY V +SDTAG+R + VE GI+ + Sbjct: 265 ARRQVALVSDEPGTTRDALQVQLNIHGYPVWLSDTAGLRHHNVSSAVEAAGIQLAKQRTK 324 Query: 298 NADLILLLKEINSK---------------KEISFPKNID---FIFIGTKSDLYSTYTEEY 339 + L+ L+ +N + +S +N I K+DL E Sbjct: 325 QSQLLFLVLPMNEYLHNSQAVTQEAKGLLRSLSCDENNSQRLLFVILNKADLL-----EN 379 Query: 340 DH---------------------LISSFTGEGLEELINKIKSILSNKFKK--LPFSIPSH 376 DH ++S TG GL+ +N++ +IL + + + S Sbjct: 380 DHQKQQAQKAVCSEFGLSPERVAVLSCLTGNGLDSFLNQVSTILRSFTARNIQNNELASE 439 Query: 377 KRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKF 436 R+ L ++L++ D + I+AE LRLAS SL + G ++ E++L +F +F Sbjct: 440 NRYRQCLKDCCQHLQIVLTPNLD--VTIMAEELRLASNSLEMMIGTMNNEEVLSQVFQRF 497 Query: 437 CIGK 440 CIGK Sbjct: 498 CIGK 501 >gi|315634810|ref|ZP_07890092.1| tRNA modification GTPase TrmE [Aggregatibacter segnis ATCC 33393] gi|315476362|gb|EFU67112.1| tRNA modification GTPase TrmE [Aggregatibacter segnis ATCC 33393] Length = 451 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 170/457 (37%), Positives = 253/457 (55%), Gaps = 28/457 (6%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64 KETI A +T I I+R+SGP V + K P PR A F DG +LD+G Sbjct: 2 KETIVAQATAPGRGGIGILRVSGPKAADVAHAVLGKC-PKPRMADYLPFKDADGTVLDQG 60 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 + + F P SFTGED E HGG V++ +L+ + + +RLA PGEFS +AF N K+D Sbjct: 61 ITLYFKGPNSFTGEDVLELQGHGGQVVLDLLLKRILLIDGIRLARPGEFSEQAFLNDKLD 120 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ADLI + +E R +++ + GE S+ Q +D + ++R+++EA +DF +EE + Sbjct: 121 LAQAEAIADLIDASSEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEAAIDFPDEE-I 179 Query: 185 QNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 + ++ LN I+ + + + QG I+R G K+VI G NAGKSSL NALA Sbjct: 180 DFLADGKIEGHLNGIIAQLDQVRAEAKQGS---ILREGMKVVIAGRPNAGKSSLLNALAG 236 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 ++ AIVTDI GTTRDVL + L+G + I DTAG+R+ D VE+ GI R + E+E AD Sbjct: 237 REAAIVTDIAGTTRDVLREHIHLDGMPLHIIDTAGLRDATDEVERIGISRAWNEIEQADR 296 Query: 302 ILL----------LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH------LISS 345 ILL L ++ S+ P NI I K+DL Y+ +S+ Sbjct: 297 ILLMLDSSDSEQDLAKVRSEFLAKLPNNIPVTIIRNKADLTGETERLYEQDGYTVVNLSA 356 Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLD 403 T +G++ L +K + + + + +RHL L Q ++L+ L + G + Sbjct: 357 KTQQGVDLLREHLKQAMGYQ-TGIEGGFLARRRHLEALEQAAQHLQTGHIQLTQFHAG-E 414 Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++AE LR+ +L +ITG + LL IFS FCIGK Sbjct: 415 LLAEELRMVQDALSEITGQFTSDDLLTNIFSSFCIGK 451 >gi|99082704|ref|YP_614858.1| tRNA modification GTPase TrmE [Ruegeria sp. TM1040] gi|122984065|sp|Q1GCM0|MNME_SILST RecName: Full=tRNA modification GTPase mnmE gi|99038984|gb|ABF65596.1| tRNA modification GTPase trmE [Ruegeria sp. TM1040] Length = 428 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 160/439 (36%), Positives = 248/439 (56%), Gaps = 16/439 (3%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 ETIFA++T + +++IR+SGP ++ E + ++ P R G ILD+ L Sbjct: 2 ETIFALATAQGKAGVAVIRVSGPHAIEIGEKLTRRTLP-ARGMIFSKLKDSAGEILDEAL 60 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 ++ F SP+SFTGE+ EF +HG IAVV+ ++ + + RLA+PGEF+RRA +NGK+DL Sbjct: 61 VLSFTSPDSFTGENIVEFQLHGSIAVVSAVMSAIEETGVARLADPGEFTRRALDNGKLDL 120 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 + E LADLI +ETE QR+ + ++G L L +W L S IE +DF++EE Sbjct: 121 TQVEGLADLIDAETEAQRKQAQVILAGTLGDLADRWRTDLIRAASLIEVTIDFADEEVPV 180 Query: 186 NFSS--KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 + + K++L+ +L +DI + + E IR G+++ I+G N GKS+L NALA + Sbjct: 181 DVTPEVKQLLSGVL---HDIEKEVDGVAIAERIREGFEVAIVGSPNVGKSTLLNALAGRT 237 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303 AI ++ GTTRDV+ + +DL G V + DTAG+RETDD VE GI+ E AD+ + Sbjct: 238 AAITSEYAGTTRDVIEVRMDLAGLPVTLLDTAGLRETDDHVEGIGIRLAQERAERADIRV 297 Query: 304 LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363 L E + I + D + + S IS TG+G+++L+++I L Sbjct: 298 FLAEEDESFSIQMREG-DLRLLPKADERRSAK-----GAISGRTGQGVDDLVSRISDTLR 351 Query: 364 NKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLASVSLGKITG 421 N+ I + RH +++ V L A + + D+ AE++R A +L + G Sbjct: 352 NRTAH--DGIATRARHRETMNRAVLSLRQAIEVVEQGPEFYDLAAEDMRSAIRALELLVG 409 Query: 422 CVDVEQLLDIIFSKFCIGK 440 ++VE LLD IFS FC+GK Sbjct: 410 RINVENLLDEIFSSFCLGK 428 >gi|302381483|ref|YP_003817306.1| tRNA modification GTPase TrmE [Brevundimonas subvibrioides ATCC 15264] gi|302192111|gb|ADK99682.1| tRNA modification GTPase TrmE [Brevundimonas subvibrioides ATCC 15264] Length = 433 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 169/440 (38%), Positives = 252/440 (57%), Gaps = 14/440 (3%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFF-GLDGRILDKG 64 +TIFA++T A AI+I+RLSGP + R ASLR G D ++D+ Sbjct: 3 DTIFALATPAGRGAIAILRLSGPDTDAALTALGAGTV-RARVASLRTLRQGPD--VIDQA 59 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 L++ FP P S+TGED AE H+HGG AVV L + LR A+PGEF+RRAFENG++D Sbjct: 60 LVLRFPGPGSYTGEDCAELHLHGGRAVVEAASSALIAL-GLRPADPGEFTRRAFENGRMD 118 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE-- 182 L +AE++ADLI +ET Q ++ + G LS Y + L + +EA++DF +EE Sbjct: 119 LAQAEAVADLIDAETRAQAGQALGQLEGALSQTYAGFRRDLLKALALVEAEIDFPDEELP 178 Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 D ++ VL+ + N + +G+ +R GY+IV++G +NAGKS+LFNAL + Sbjct: 179 DHLAQTAGPVLDGLSEALNAALADADRGRR---VREGYRIVLIGETNAGKSALFNALVAR 235 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 + AIVT I GTTRDVL DL + GY V +SDTAG+R++ D VE EG++R + ADL Sbjct: 236 EAAIVTPIAGTTRDVLDADLIMGGYAVTLSDTAGLRDSADPVEAEGVRRARARAQAADLR 295 Query: 303 LLLKEINSKK--EISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKS 360 L ++ + F D + + TK+DL + ++S+ TGEG+ +L I++ Sbjct: 296 LWVRAPGDPEGDAAMFTTPQDLV-VWTKADLGARDPAAGGLVVSATTGEGMSDLRAAIEA 354 Query: 361 ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKIT 420 L F + +RH L + + +E A ++ E+LR A+ +LG++T Sbjct: 355 RLIRDLAGADFPAVTRERHRRRLVEALASVE-AGRARLGSAPELAGEDLRRAADALGRVT 413 Query: 421 GCVDVEQLLDIIFSKFCIGK 440 G + VE +L +FS FCIGK Sbjct: 414 GAIGVEDILGEVFSTFCIGK 433 >gi|270264114|ref|ZP_06192381.1| tRNA modification GTPase mnmE [Serratia odorifera 4Rx13] gi|270041763|gb|EFA14860.1| tRNA modification GTPase mnmE [Serratia odorifera 4Rx13] Length = 455 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 166/459 (36%), Positives = 250/459 (54%), Gaps = 23/459 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+ +TI A +T + I+R+SG + + K P PR A F G Sbjct: 1 MSSTTDTIVAQATPPGRGGVGILRISGRGAKDAAQALLGKL-PKPRYADYLPFRDAAGAT 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG +++ +L+ + +P +R+A PGEFS RAF N Sbjct: 60 LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRVLALPGVRIARPGEFSERAFLN 119 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + +E R +M + G S+ Q ++ LTH+R ++EA +DF + Sbjct: 120 DKLDLAQAEAIADLIDASSEQAARSAMNSLQGAFSTRIHQLVEALTHLRIYVEAAIDFPD 179 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + S ++ + + D+ + ++ + G ++R G K+VI G NAGKSSL NALA Sbjct: 180 EE-IDFLSDGKIEAQLNGVMADLDNVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 238 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 +D AIVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+E AD Sbjct: 239 GRDAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWNEIEQAD 298 Query: 301 LILLL-----------KEINSKKEISFPKNIDFIFIGTKSDLYS---TYTEEYDH---LI 343 +L + EI + P ++ + K+D+ TE H + Sbjct: 299 RVLFMVDGTTTAATEPAEIWPEFMARLPHSLPITVVRNKADITGETLGMTEVNGHSLIRL 358 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCG 401 S+ TGEG++ L + +K + + + +RHL L Q +L L G Sbjct: 359 SARTGEGIDLLRDHLKQSMGFT-SNMEGGFLARRRHLQALEQAALHLVEGKEQLVSAYAG 417 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LRLA +L +ITG + LL IFS FCIGK Sbjct: 418 -ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 455 >gi|145301203|ref|YP_001144044.1| tRNA modification GTPase TrmE [Aeromonas salmonicida subsp. salmonicida A449] gi|166200467|sp|A4STS4|MNME_AERS4 RecName: Full=tRNA modification GTPase mnmE gi|142853975|gb|ABO92296.1| tRNA modification GTPase TrmE [Aeromonas salmonicida subsp. salmonicida A449] Length = 453 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 169/453 (37%), Positives = 251/453 (55%), Gaps = 21/453 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + I+R+SGP+ QV E + K P R A F G+ LD+G+ Sbjct: 4 DTIVAQATAPGRGGVGIVRVSGPAAEQVAEIVLGKL-PRVRYAEYLPFKDEQGQPLDQGI 62 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 ++F +P SFTGED E HGG +++ ++ + ++ LR A PGEFS RAF N K+DL Sbjct: 63 ALLFKAPNSFTGEDVLELQGHGGPVIMDMLVRRILQIKGLRPARPGEFSERAFMNDKLDL 122 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E R +M + G+ SS Q ++ L +R ++EA +DF +EE + Sbjct: 123 AQAEAIADLIEASSEQAARSAMHSLQGQFSSKIQQLVESLIRLRIYVEAAIDFPDEE-ID 181 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S +V D+ + ++ S+ K G ++R G K+VI G NAGKSSL NALA ++ A Sbjct: 182 FLSDGKVAGDLYAIMAELDGVRSEAKQGALLREGMKVVIAGRPNAGKSSLLNALAGRESA 241 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVT+I GTTRDVL + L+G + I DTAG+R+T D VE+ GI+R + E+E AD +L + Sbjct: 242 IVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTLDKVEQIGIERAWAEIEQADRVLFM 301 Query: 306 -----------KEINSKKEISFPKNIDFIFIGTKSDLYS---TYTEEYDHL---ISSFTG 348 +EI + PK+I + K+DL ++E H IS+ T Sbjct: 302 VDGTTTDAIDPREIWPEFVDRLPKDIGLTVVRNKADLTGEDLAPSQELGHAVYRISAKTE 361 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407 GL L +K+ + + + +RHL L + L +A E +++AE Sbjct: 362 LGLPALREHLKACMGFQ-GNTEGGFMARRRHLDALERAAERLLVAKDQLEIYVAGELVAE 420 Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LRLA SL +ITG + LL IFS FCIGK Sbjct: 421 ELRLAQESLSEITGEFSSDDLLGRIFSSFCIGK 453 >gi|145638177|ref|ZP_01793787.1| tRNA modification GTPase TrmE [Haemophilus influenzae PittII] gi|145272506|gb|EDK12413.1| tRNA modification GTPase TrmE [Haemophilus influenzae PittII] Length = 452 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 167/455 (36%), Positives = 250/455 (54%), Gaps = 23/455 (5%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64 KETI A +T I I+R+SGP +V + I K P PR A F DG ILD+G Sbjct: 2 KETIVAQATAPGRGGIGILRVSGPLATKVAQAILGKC-PKPRMADYLPFKDADGTILDQG 60 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 + + F SP SFTGED E HGG V++ +L+ + ++ +RLA PGEFS +AF N K+D Sbjct: 61 IALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQIDGIRLARPGEFSEQAFLNDKLD 120 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ADLI + +E R +++ + GE S +D + ++R+++EA +DF +EE + Sbjct: 121 LAQAEAIADLIDATSEQAVRSALKSLQGEFSKKVNALVDSVIYLRTYVEASIDFPDEE-I 179 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + ++ ++ + N + S+ K G I+R G K+VI G NAGKSSL NALA + Sbjct: 180 DFLADGKIEANLRGIINQLEDVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGHEA 239 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIVTDI GTTRDVL + ++G + I DTAG+R D VE+ GI R + E+E AD I+L Sbjct: 240 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRNATDEVERIGISRAWTEIEQADRIIL 299 Query: 305 -----------LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347 L ++ S+ P + + K DL E + +S+ T Sbjct: 300 MLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKIDLNGEQASESEQGGYQIISLSAQT 359 Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDII 405 +G++ L +K + + + + +RHL L + +L+ + L E G +++ Sbjct: 360 HDGVQLLREHLKQAMGFQ-TGMEGGFLARRRHLDALDKAAEHLQIGLVQLTEFHAG-ELL 417 Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 AE LRL L +ITG + LL IFS FCIGK Sbjct: 418 AEELRLVQSYLSEITGQFTSDDLLGNIFSSFCIGK 452 >gi|254447523|ref|ZP_05060989.1| tRNA modification GTPase TrmE [gamma proteobacterium HTCC5015] gi|198262866|gb|EDY87145.1| tRNA modification GTPase TrmE [gamma proteobacterium HTCC5015] Length = 432 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 163/437 (37%), Positives = 245/437 (56%), Gaps = 21/437 (4%) Query: 20 ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGED 79 + I+R+SGP + E + + + PR A F+ +G++LD+G+ + FP P S+TGED Sbjct: 1 MGIVRVSGPQARSMGEQLTRLSECRPRYAHYGPFYDSEGQVLDRGISLYFPGPHSYTGED 60 Query: 80 SAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET 139 EF HGG V+N +L+ + K+ R A PGEF+ RAF N K+DL +AE++ADLI S T Sbjct: 61 VFEFQGHGGPVVLNLLLKSVFKL-GARPAQPGEFTERAFLNDKMDLAQAEAVADLIESTT 119 Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFL 199 E + +SG SS +D L +IR +IEA LDF EEE + E+ + L Sbjct: 120 EQAALAATRSLSGAFSSRIQTLLDSLIYIRLYIEAALDFPEEE-IDFLGDSELAQRMQQL 178 Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259 + D++S + G+++R G +V+LG NAGKSSL NALA D AIVTD+ GTTRDVL Sbjct: 179 RLDVASVKQSVRQGKLLREGMSVVLLGQPNAGKSSLLNALAGDDTAIVTDVAGTTRDVLQ 238 Query: 260 IDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP-- 317 + L+G + I DTAG+R+T D+VE EG++R + VE AD +LLL I++++ Sbjct: 239 QAIHLDGLPLNIIDTAGLRDTQDVVEAEGVRRAWAAVEQADRVLLL--IDAERGFDHGDQ 296 Query: 318 --------KNIDFIFIGTKSDLYSTYTE------EYDHLISSFTGEGLEELINKIKSILS 363 + +F ++ K D + ++ IS+ GEG++ L +K + Sbjct: 297 AIVDALDRHSTNFDYLWNKIDRLGQAPKIEKKSGQWHLSISASLGEGIDLLSKHLKEAMG 356 Query: 364 NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCV 423 K + I + +RH+ L + +E A+ ++ AE LR A S+ +ITG Sbjct: 357 YKQETEGLFI-ARQRHIESLEAASKAIECAADQLSVGAGELAAEELRQAQESMSQITGEF 415 Query: 424 DVEQLLDIIFSKFCIGK 440 + LL IFS+FCIGK Sbjct: 416 SSDDLLGEIFSRFCIGK 432 >gi|195573463|ref|XP_002104713.1| GD18297 [Drosophila simulans] gi|194200640|gb|EDX14216.1| GD18297 [Drosophila simulans] Length = 493 Score = 264 bits (674), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 171/478 (35%), Positives = 261/478 (54%), Gaps = 52/478 (10%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK--PFPRKASLRYFFGLDGR-ILDK 63 TI+++S+G + +S+IR+SGP + I K+ P R+A L+ F+ + ++D+ Sbjct: 24 TIYSLSSGHVKCGVSVIRVSGPQTKKALRAIVANKEYEPKARQAYLKSFYHPASKEMIDR 83 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 GLL+ FP P SFTGEDS EF VHG +AV+ +L+ L K+ LR A PGEF++RAF GK+ Sbjct: 84 GLLLWFPGPASFTGEDSCEFQVHGSLAVIAAMLDALGKVDGLRPAEPGEFTKRAFFGGKL 143 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL E E LADLI +ETE QR+ ++ +G L+ LY W +L + +EA +DF+EEE Sbjct: 144 DLTEVEGLADLIHAETEAQRKQALLQSTGALARLYDNWRRRLIRCAAHLEAYIDFAEEEQ 203 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 ++ ++ ++ +K +I H+S + GE++R+G + VI+G N GKSSL N L ++ Sbjct: 204 IEGGIILQLGKELKAVKLEIREHLSDQRQGELLRDGVRTVIIGAPNVGKSSLLNLLCQRS 263 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEVENADLI 302 V+IVTD GTTRD++ + GY V SDTAG+R T D +E+EG++R + +DLI Sbjct: 264 VSIVTDQAGTTRDIIETMHNFGGYPVVFSDTAGLRRYTTDSIEQEGMQRAKNCLVQSDLI 323 Query: 303 LLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSI- 361 LLL E K I+ + D + + Y E D + +G+ L+ + NK ++ Sbjct: 324 LLLAE---AKNIAHLTHDDAV-----APFVDNYLGELDIPLDMCSGKRLQLVANKTDTLT 375 Query: 362 ---------LSN-------KFKKLPFSIPSHKRHLYHL-----------------SQTVR 388 LSN K K+P + S ++ L L Q R Sbjct: 376 EEEHQQLDKLSNVLAISCHKPDKMPVLLGSLEKQLQELCGEPRAENPRITNTRYRQQLER 435 Query: 389 YLEMASLNEKDCGLD------IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +E + +D D I A LR + + +ITG + E +LD++F FCIGK Sbjct: 436 CIENIDIFLRDYRPDVYPDMAIAASKLRNSVRCIERITGHISCEDILDVVFKDFCIGK 493 >gi|300719145|ref|YP_003743948.1| tRNA modification GTPase [Erwinia billingiae Eb661] gi|299064981|emb|CAX62101.1| tRNA modification GTPase [Erwinia billingiae Eb661] Length = 454 Score = 264 bits (674), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 167/460 (36%), Positives = 250/460 (54%), Gaps = 26/460 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+H ETI A +T + I+R+SG +V + + K P PR A F DG+ Sbjct: 1 MSH-SETIVAQATPPGRGGVGILRISGSKAAEVAQALLGKL-PKPRYADYLPFRDTDGKA 58 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG +++ +L+ + MP LR+A PGEFS RAF N Sbjct: 59 LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRIVAMPGLRIARPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + +E R ++ + G S ++ LTH+R ++EA +DF + Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSLRVNHLVEALTHLRIYVEAAIDFPD 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + S ++ + + D+ ++ + G ++R G K+VI G NAGKSSL NALA Sbjct: 179 EE-IDFLSDGKIEAQLEQVIADLDGVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+E AD Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWNEIEQAD 297 Query: 301 LILLL-----------KEINSKKEISFPKNIDFIFIGTKSDL---YSTYTEEYDH---LI 343 +L + EI P + + K+D+ TE H + Sbjct: 298 RVLFMVDGTTTGATEPAEIWPDFIARLPATLPITVVRNKADVTGEAQGLTEVNGHSLIRL 357 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL- 402 S+ TG+G++ L N +K + + + +RHL L +L E+ G Sbjct: 358 SARTGDGIDVLRNHLKESMGFS-GNMEGGFLARRRHLQALELAATHLLQG--REQLLGAR 414 Query: 403 --DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LR+A +L +ITG + LL IFS FCIGK Sbjct: 415 AGELLAEELRVAQQALSEITGEFTSDDLLGRIFSSFCIGK 454 >gi|119773150|ref|YP_925890.1| tRNA modification GTPase TrmE [Shewanella amazonensis SB2B] gi|166234819|sp|A1S1G4|MNME_SHEAM RecName: Full=tRNA modification GTPase mnmE gi|119765650|gb|ABL98220.1| tRNA modification GTPase TrmE [Shewanella amazonensis SB2B] Length = 453 Score = 264 bits (674), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 164/453 (36%), Positives = 251/453 (55%), Gaps = 21/453 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + IIR+SG V + P PR A F DG ++D+G+ Sbjct: 4 DTIVAQATAPGRGGVGIIRVSGKLASDVAHTLLGHL-PKPRYADFCDFKAADGSVIDQGI 62 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + F P SFTGED E HGG V++ ++ + K+ +R+A PGEFS +AF N K+DL Sbjct: 63 ALFFKGPNSFTGEDVLELQGHGGQVVMDMLIRAVLKVKGVRIARPGEFSEQAFMNDKLDL 122 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E + ++ + GE S+ +DK+T++R ++EA +DF +EE V Sbjct: 123 TQAEAIADLIDATSEQAAKSALHSLQGEFSTQVHTLVDKITNLRLYVEAAIDFPDEE-VD 181 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S ++ + + + + + K G IIR G K+VI G NAGKSSL NALA K+ A Sbjct: 182 FLSDGKIAAALYAIIDQLDEVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKESA 241 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTDI GTTRDVL + L+G + I DTAG+R+T D VE+ GI+R + E+ +AD +L + Sbjct: 242 IVTDIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTTDEVERIGIERAWSEIASADRVLFM 301 Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLY-----STYTEEYD-HLISSFTG 348 + + PK + + K+DL +T + Y + IS+ TG Sbjct: 302 VDGTDTAAVDPHEIWPDFIDRLPKAMGVTVVRNKADLTGEPLEATEEQGYSVYRISAKTG 361 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407 G++ L +KS++ + L + +RHL L Q +L++ + E +++AE Sbjct: 362 LGVDALKQHLKSLMGYQ-SNLEGGFIARRRHLEALEQASEHLQLGKVQLEVYLAGELLAE 420 Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LR+A +L +ITG + LL IFS FCIGK Sbjct: 421 ELRMAQQALSEITGEFTSDDLLGKIFSSFCIGK 453 >gi|326569041|gb|EGE19110.1| tRNA modification GTPase TrmE [Moraxella catarrhalis BC1] Length = 466 Score = 264 bits (674), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 170/464 (36%), Positives = 262/464 (56%), Gaps = 37/464 (7%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66 TI A+++ + IIRLSG +++ + ++ PR A F+G +G ++D+G++ Sbjct: 10 TIAAIASPIGQGGVGIIRLSGKDAYRIGCLMTRRSNLIPRMAYFGGFYGQEG-VIDEGVI 68 Query: 67 IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126 I F +P SFTGED E HGG+ + N +L + ++ R A GEFS RAFEN KIDL+ Sbjct: 69 IYFKAPHSFTGEDVVELQGHGGMVLQNMLLARVFEL-GARQAAAGEFSYRAFENDKIDLV 127 Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186 +AE+++D IS+ + Q ++ ++GE S + +DKL H+R ++EA +DF EEEDV Sbjct: 128 QAEAISDAISATSVAQATSAIRSLTGEFSQKINELLDKLVHLRLYVEASIDFPEEEDVDF 187 Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246 S + N + + I ++ K G+++R+G +V+ G NAGKSSL N L+ + AI Sbjct: 188 LSDGIIENKLTEILLGIDRILATAKQGQLLRDGVHVVLAGKPNAGKSSLLNRLSGTERAI 247 Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306 VT+I GTTRD L L L G V ++DTAG+R+TDD VEK GIKR F + AD+++++ Sbjct: 248 VTEIAGTTRDTLEETLILNGLTVHLTDTAGLRKTDDHVEKIGIKRAFDAIRQADVLMMVY 307 Query: 307 EINSKKE-ISFPKNI---------------DFIFIGTKSDL--------YSTYTEEYDHL 342 ++ ++ + ++ + I + KSDL S T+ L Sbjct: 308 DLTTETDPLALADQLFCEGVTEDVGDIIRQKLILVANKSDLLVSKPVLQVSCETKSVPKL 367 Query: 343 --ISSFTGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLN 396 +S TGEGL+ELI IL+ K F S+ + RHL L++ Y A L Sbjct: 368 VYVSCETGEGLDELIE----ILTQKVGFHPPENSLIARTRHLDALNRAKGYAIEAYEQLT 423 Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G +++AE+LR + +LG+ITG + ++LL IFS FCIGK Sbjct: 424 IYHAG-ELVAESLRQSQQALGEITGQMSADELLGKIFSSFCIGK 466 >gi|118387767|ref|XP_001026986.1| small GTP-binding protein domain containing protein [Tetrahymena thermophila] gi|89308756|gb|EAS06744.1| small GTP-binding protein domain containing protein [Tetrahymena thermophila SB210] Length = 550 Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 165/532 (31%), Positives = 273/532 (51%), Gaps = 98/532 (18%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-----RKASLRYFFGLD 57 H + I+A+++G + + +SIIR+SG +C Q + + + + + ++ + L Sbjct: 23 HFSDNIYAIASGNVKAGVSIIRISGSNCLQAGQMLVQNAQQRQLIKGMNNSQVQDYLNLK 82 Query: 58 GRI------------------------------LDKGLLIVFPSPESFTGEDSAEFHVHG 87 R +D+G+ + F P+S+TGED E H+HG Sbjct: 83 NRYAHFKKLYSLIDPTVSPQNQSFQKQDLIYQQIDQGIFMYFQGPKSYTGEDIVEMHIHG 142 Query: 88 GIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSM 147 A+ +L EL+++ N RLA+PGEF++RA N K+DLLE E LADL++SETE QR S Sbjct: 143 SRALQKKVLLELSQLNNFRLADPGEFTKRAMINNKLDLLEVEGLADLLNSETESQRVQST 202 Query: 148 EGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFS----SKEVLNDILFLKNDI 203 + G+ S + W +L + EA +DF ++D F+ ++E + ++ DI Sbjct: 203 QQFLGKSSQILEDWRFQLIRALAHAEAFIDFESDQDDVEFNILGKTQENVQQVI---KDI 259 Query: 204 SSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD 263 + +S GEI+R+G KI I+G NAGKS+L N LAKKD+AIV++IPGTTRD L++ L+ Sbjct: 260 NEQLSDRNRGEILRDGMKISIIGKPNAGKSTLLNCLAKKDIAIVSEIPGTTRDALSVSLN 319 Query: 264 LEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE-------------------------- 297 + G+ + + DTAGIR+T D++E++G+ + ++ Sbjct: 320 ISGFPILLYDTAGIRQTKDVIEEKGVNKALQNIQVLKQIIKLKLQFGKIKRQHARESDLN 379 Query: 298 -----------NADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTE--------- 337 AD ++++I EI IFI K D ++ E Sbjct: 380 IWIIDIDDVIKQADGSYIVQDIKEISEILESNQNTLIFI-NKIDKVNSQKEITDITIRDK 438 Query: 338 --EYDHLISSFTGEGLEELINKIKSILSNKF-------KKLPFSIPSHKRHLYHLSQTVR 388 + D IS+ + + L++K+ ++ + SI + RH L + + Sbjct: 439 KFKIDGQISAQHNQNINSLLDKLTKKINERLDITDGIMSSGTISIITQTRHRLELQKCLE 498 Query: 389 YLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +LE+ S N+++ +DI+ E LR A +G+ITG VDVE++LD++FS+FCIGK Sbjct: 499 HLEIFSRNKQNLPVDIVCEELRQAVNCIGRITGRVDVEEVLDVLFSEFCIGK 550 >gi|205422392|sp|Q0AE55|MNME_NITEC RecName: Full=tRNA modification GTPase mnmE Length = 451 Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 171/451 (37%), Positives = 253/451 (56%), Gaps = 20/451 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A++T I I+R+SG + Q+ + I K P PR A L F + +++D+G+ Sbjct: 5 DTIAAIATPPGRGGIGIVRISGTNLEQLAQTILGKL-PDPRHAGLFNFLDQNNQVIDQGI 63 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 ++ FPSP S+TGED E H HGG AV+N +L ++ RLA PGEF+ RAF N K+DL Sbjct: 64 VLYFPSPNSYTGEDVLELHGHGGPAVMNLLLTRCLQL-GARLAEPGEFTLRAFLNEKLDL 122 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE +ADLI + T R ++ + GE SS Q + L +R +EA LDF EEE + Sbjct: 123 AQAEGVADLIEASTANAARCAVRSLHGEFSSAIHQLVSALIDLRVLVEATLDFPEEE-ID 181 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S + + ++ + +S + G +++ G K+V+ G N GKSSL N LA ++A Sbjct: 182 FLQSAHAVEQLASIQTKLEQVLSASRRGNLLQEGIKVVLTGQPNVGKSSLLNRLAGDEIA 241 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVT+IPGTTRD + +++EG + + DTAG+RET DIVE+ GI R + +E ADL+LLL Sbjct: 242 IVTEIPGTTRDTIRQSIEIEGIPLHLIDTAGLRETSDIVEQHGIARAYAAIEQADLVLLL 301 Query: 306 KEIN---SKKEIS----FPKNIDFIFIGTKSDLYSTYTE-EYDH-----LISSFTGEGLE 352 + +K++ S PK + + + K DL + E D +S +GEG+E Sbjct: 302 VDGRYGVTKEDHSVLARLPKELPVLTVHNKIDLSGQLSRIEEDTSGTAIYLSVKSGEGIE 361 Query: 353 ELINK-IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LNEKDCGLDIIAENL 409 L +K++ + + +RHL L L+ A L+ D L+I+AE L Sbjct: 362 LLRTVLLKTVGWQTNIAGEGAYMARQRHLQALLHAKELLKRAETWLHTADQ-LEILAEEL 420 Query: 410 RLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 RLA +L ITG + LL IFS FCIGK Sbjct: 421 RLAQQALSSITGEFTSDDLLGEIFSNFCIGK 451 >gi|114332120|ref|YP_748342.1| tRNA modification GTPase TrmE [Nitrosomonas eutropha C91] gi|114309134|gb|ABI60377.1| tRNA modification GTPase trmE [Nitrosomonas eutropha C91] Length = 459 Score = 263 bits (673), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 171/451 (37%), Positives = 253/451 (56%), Gaps = 20/451 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A++T I I+R+SG + Q+ + I K P PR A L F + +++D+G+ Sbjct: 13 DTIAAIATPPGRGGIGIVRISGTNLEQLAQTILGKL-PDPRHAGLFNFLDQNNQVIDQGI 71 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 ++ FPSP S+TGED E H HGG AV+N +L ++ RLA PGEF+ RAF N K+DL Sbjct: 72 VLYFPSPNSYTGEDVLELHGHGGPAVMNLLLTRCLQL-GARLAEPGEFTLRAFLNEKLDL 130 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE +ADLI + T R ++ + GE SS Q + L +R +EA LDF EEE + Sbjct: 131 AQAEGVADLIEASTANAARCAVRSLHGEFSSAIHQLVSALIDLRVLVEATLDFPEEE-ID 189 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S + + ++ + +S + G +++ G K+V+ G N GKSSL N LA ++A Sbjct: 190 FLQSAHAVEQLASIQTKLEQVLSASRRGNLLQEGIKVVLTGQPNVGKSSLLNRLAGDEIA 249 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVT+IPGTTRD + +++EG + + DTAG+RET DIVE+ GI R + +E ADL+LLL Sbjct: 250 IVTEIPGTTRDTIRQSIEIEGIPLHLIDTAGLRETSDIVEQHGIARAYAAIEQADLVLLL 309 Query: 306 KEIN---SKKEIS----FPKNIDFIFIGTKSDLYSTYTE-EYDH-----LISSFTGEGLE 352 + +K++ S PK + + + K DL + E D +S +GEG+E Sbjct: 310 VDGRYGVTKEDHSVLARLPKELPVLTVHNKIDLSGQLSRIEEDTSGTAIYLSVKSGEGIE 369 Query: 353 ELINK-IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LNEKDCGLDIIAENL 409 L +K++ + + +RHL L L+ A L+ D L+I+AE L Sbjct: 370 LLRTVLLKTVGWQTNIAGEGAYMARQRHLQALLHAKELLKRAETWLHTAD-QLEILAEEL 428 Query: 410 RLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 RLA +L ITG + LL IFS FCIGK Sbjct: 429 RLAQQALSSITGEFTSDDLLGEIFSNFCIGK 459 >gi|254452743|ref|ZP_05066180.1| tRNA modification GTPase TrmE [Octadecabacter antarcticus 238] gi|198267149|gb|EDY91419.1| tRNA modification GTPase TrmE [Octadecabacter antarcticus 238] Length = 428 Score = 263 bits (673), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 163/437 (37%), Positives = 242/437 (55%), Gaps = 12/437 (2%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TIFA++T A + +SIIR+SGP + C + R+ L DG ++D+ Sbjct: 2 DTIFALATAAGKAGVSIIRVSGPDALKSCATMGAVLGDQDRR--LVKLASADGSLIDQAF 59 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 I F SFTGE E HG A+V +L+ L + NLRLA PGEF+RRA ENG +DL Sbjct: 60 AISFAPRRSFTGEQVVELQTHGSPAIVAAVLKRLGGL-NLRLAEPGEFTRRAMENGVLDL 118 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 + E LADLI +ETE QRR ++ G L L W L + +EA +DF +E DV Sbjct: 119 AQVEGLADLIDAETESQRRQAVRVFQGALGDLASGWRVSLVRAAALLEATIDFVDE-DVP 177 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 EV I + ++ + ++ E +R+G+++ ++G N+GKS+L N LA ++ A Sbjct: 178 VDVYPEVRGLIDIVTKEVRYEAAGVRVRERVRDGFEVALVGPPNSGKSTLLNRLAGREAA 237 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 I +DI GTTRDV+ + +DL+G V I DTAG+R++DD++E GI R AD+ + L Sbjct: 238 ITSDIAGTTRDVIEVKMDLDGLPVTILDTAGLRDSDDVLEGIGIARGKDRASAADVRVHL 297 Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365 E SK +D I++ +K+DL E +S TG G++ L+++I S L + Sbjct: 298 MENLSKNPAQSGFGLD-IYVKSKADLDK---EPVKDAVSGSTGYGMDRLLDQISSHLRQQ 353 Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LNEKDCGLDIIAENLRLASVSLGKITGCV 423 + + RH L L+ + L+ D +D++AE+LR+A SL + G V Sbjct: 354 LAG--AGVATRTRHQRALEAAAVALDAVTLGLDVDDMPVDLLAEDLRIAIRSLDSLIGRV 411 Query: 424 DVEQLLDIIFSKFCIGK 440 DVE +L IFS FCIGK Sbjct: 412 DVENVLGEIFSSFCIGK 428 >gi|260441411|ref|ZP_05795227.1| tRNA modification GTPase TrmE [Neisseria gonorrhoeae DGI2] gi|291044771|ref|ZP_06570480.1| tRNA modification GTPase mnmE [Neisseria gonorrhoeae DGI2] gi|291011665|gb|EFE03661.1| tRNA modification GTPase mnmE [Neisseria gonorrhoeae DGI2] Length = 448 Score = 263 bits (673), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 166/456 (36%), Positives = 253/456 (55%), Gaps = 24/456 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+ TI AV+T + +IR+SG + + + +C K P PR A+ F DG+ Sbjct: 1 MSDNVPTIAAVATAPGRGGVGVIRISGKNLLPMAQALCGKT-PEPRVATYADFTDADGQA 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D GLL+ F +P SFTGED E HGG V+ +L ++ RLA PGEF++RAF N Sbjct: 60 IDSGLLLFFAAPASFTGEDVIELQGHGGPVVMEMLLNRCLEL-GARLAEPGEFTKRAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE +ADLI + RL++ + G+ S ++ L +R +EA LDF E Sbjct: 119 DKLDLAQAEGVADLIDASGRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEAALDFPE 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E D+ + + + L+ + ++ + G I+R G +V++G N GKSSL NALA Sbjct: 179 E-DIDFLEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 +VAIVTDI GTTRD + + ++G V I DTAG+RETDD+VE+ GI+R+ V AD Sbjct: 238 GDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEAD 297 Query: 301 LILLLKE----INSKKEI---SFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347 + L+L + +N K + + P ++ I I +KSDL++ + +S+ T Sbjct: 298 VALVLVDPREGLNEKTRMILDTLPSDLKRIEIHSKSDLHAHAAGGFGTGAETVIALSAKT 357 Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG---LDI 404 G+GL+ L + + + + + RH+ L L +A L CG +++ Sbjct: 358 GDGLDALKRTLLCEAGWQGESEGLFL-ARTRHVNALKAAQEELSLAVL----CGNHQIEL 412 Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 AE+LRLA V+ G+ITG + LL +IFS+FCIGK Sbjct: 413 FAEHLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448 >gi|240114777|ref|ZP_04728839.1| tRNA modification GTPase TrmE [Neisseria gonorrhoeae PID18] gi|268600426|ref|ZP_06134593.1| thiophene and furan oxidation protein [Neisseria gonorrhoeae PID18] gi|268584557|gb|EEZ49233.1| thiophene and furan oxidation protein [Neisseria gonorrhoeae PID18] Length = 448 Score = 263 bits (673), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 166/456 (36%), Positives = 253/456 (55%), Gaps = 24/456 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+ TI AV+T + +IR+SG + + + +C K P PR A+ F DG+ Sbjct: 1 MSDNVPTIAAVATAPGRGGVGVIRISGKNLLPMAQALCGKT-PEPRVATYADFTDADGQA 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D GLL+ F +P SFTGED E HGG V+ +L ++ RLA PGEF++RAF N Sbjct: 60 IDSGLLLFFAAPASFTGEDVIELQGHGGPVVMEMLLNRCLEL-GARLAEPGEFTKRAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE +ADLI + RL++ + G+ S ++ L +R +EA LDF E Sbjct: 119 DKLDLAQAEGVADLIDASGRSAARLALRSLKGDFSRRIHGLVEGLITLRMLVEAALDFPE 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E D+ + + + L+ + ++ + G I+R G +V++G N GKSSL NALA Sbjct: 179 E-DIDFLEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 +VAIVTDI GTTRD + + ++G V I DTAG+RETDD+VE+ GI+R+ V AD Sbjct: 238 GDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEAD 297 Query: 301 LILLLKE----INSKKEI---SFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347 + L+L + +N K + + P ++ I I +KSDL++ + +S+ T Sbjct: 298 VALVLVDPREGLNEKTRMILDTLPSDLKRIEIHSKSDLHAHAAGGFGTGAETVIALSAKT 357 Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG---LDI 404 G+GL+ L + + + + + RH+ L L +A L CG +++ Sbjct: 358 GDGLDALKRTLLCEAGWQGESEGLFL-ARTRHVNALKAAQEELSLAVL----CGNHQIEL 412 Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 AE+LRLA V+ G+ITG + LL +IFS+FCIGK Sbjct: 413 FAEHLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448 >gi|145630099|ref|ZP_01785881.1| tRNA modification GTPase [Haemophilus influenzae R3021] gi|144984380|gb|EDJ91803.1| tRNA modification GTPase [Haemophilus influenzae R3021] Length = 452 Score = 263 bits (672), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 166/455 (36%), Positives = 252/455 (55%), Gaps = 23/455 (5%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64 KETI A +T I I+R+SGP +V + I K P PR A F D ILD+G Sbjct: 2 KETIVAQATAPGRGGIGILRVSGPLATKVAQAILGKC-PKPRMADYLPFKDADSTILDQG 60 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 + + F SP SFTGED E HGG V++ +L+ + ++ +RLA PGEFS +AF N K+D Sbjct: 61 IALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQIDGIRLARPGEFSEQAFLNDKLD 120 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ADLI + +E R +++ + GE S +D + ++R+++EA +DF +EE + Sbjct: 121 LAQAEAIADLIDATSEQAARSALKSLQGEFSKKVNTLVDSVIYLRTYVEASIDFPDEE-I 179 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + ++ ++ + N + + S+ K G I+R G K+VI G NAGKSSL NALA ++ Sbjct: 180 DFLADGKIEANLRGIINQLENVRSEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREA 239 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIVTDI GTTRDVL + ++G + I DTAG+R+ D VE+ GI R + E+E AD I+L Sbjct: 240 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDATDEVERIGISRAWTEIEQADRIIL 299 Query: 305 -----------LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347 L ++ S+ P + + K DL E + +S+ T Sbjct: 300 MLDSSDPESVDLTKVRSEFLAKLPSTLPVTIVRNKIDLNGEQASESEQGGYQIISLSAQT 359 Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDII 405 +G++ L +K + + + + +RHL L + +L+ + L E G +++ Sbjct: 360 HDGVKLLREHLKQAMGFQ-TGIEGGFLARRRHLDALEKAAEHLQIGLVQLTEFHAG-ELL 417 Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 AE LRL L +ITG + LL IFS FCIGK Sbjct: 418 AEELRLVQSYLSEITGQFTSDDLLGNIFSSFCIGK 452 >gi|269140891|ref|YP_003297592.1| hypothetical protein ETAE_3550 [Edwardsiella tarda EIB202] gi|267986552|gb|ACY86381.1| hypothetical protein ETAE_3550 [Edwardsiella tarda EIB202] gi|304560649|gb|ADM43313.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Edwardsiella tarda FL6-60] Length = 455 Score = 263 bits (672), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 164/462 (35%), Positives = 250/462 (54%), Gaps = 29/462 (6%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M +TI A +T + I+R+SGP Q K P PR A F DG + Sbjct: 1 MISSSDTIVAQATAPGRGGVGILRVSGPQA-QAVALALLGKLPKPRYADYLPFRDHDGTM 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG +++ +L+ + ++P LR+A PGEFS RAF N Sbjct: 60 LDQGIALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILQLPGLRIARPGEFSERAFLN 119 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + +E R ++ + G S+ Q ++ L H+R ++EA +DF + Sbjct: 120 DKMDLAQAEAIADLIDASSEQAARSAVNSLQGVFSARIHQLVESLIHLRIYVEAAIDFPD 179 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + S +V + + + ++ ++ + G ++R G K+VI G NAGKSSL NALA Sbjct: 180 EE-IDFLSDGKVEAQLNAVMDSLAGVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 238 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI R + E+E AD Sbjct: 239 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIARAWQEIEQAD 298 Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYS---TYTEEYDHL---I 343 +L + + + P ++ + K+D+ ++ H + Sbjct: 299 RVLFMVDGTTTDATDPAAIWPDFIARLPASLPITVVRNKADVTGEPLGISDGDGHTLVRL 358 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL- 402 S+ TG G++ L + +K + L + +RHL L Q +L+ KD L Sbjct: 359 SARTGAGVDVLRDHLKRSMGFD-TSLEGGFLARRRHLQALDQAALHLQQG----KDQLLG 413 Query: 403 ----DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LRLA SL +ITG + LL IF+ FCIGK Sbjct: 414 AMAGELLAEELRLAQQSLSEITGEFTSDDLLGRIFTSFCIGK 455 >gi|221135459|ref|ZP_03561762.1| tRNA modification GTPase TrmE [Glaciecola sp. HTCC2999] Length = 458 Score = 263 bits (672), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 165/463 (35%), Positives = 254/463 (54%), Gaps = 37/463 (7%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63 ++ETI A +T + IIR+SG + I P PR A F DG +LD+ Sbjct: 7 QQETIVAQATAIGKGGVGIIRVSGADATAIAIAILGHC-PAPRHAYYGNFHDNDGTVLDQ 65 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 G+ + FP+P SFTGED E HGG +++ +++ + K PN+RLA PGEFS RAF N K+ Sbjct: 66 GIALYFPNPNSFTGEDVLELQGHGGQIIMDMLIQAILKQPNVRLARPGEFSERAFLNDKL 125 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL +AE++ADLI + ++ R ++ + GE S ++++ H+R ++EA +DF EEE Sbjct: 126 DLAQAEAIADLIDATSQQAARSALRSLQGEFSQRIHTLVEEIIHLRMYVEAAIDFPEEE- 184 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 + S +V D+ + ++ Q K G I+R G ++VI G NAGKSSL NAL+ +D Sbjct: 185 IDFLSDGKVQGDLQHIVETLALVQQQAKQGTILREGMQVVIAGRPNAGKSSLLNALSGRD 244 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303 AIVT+I GTTRDVL+ + ++G + I DTAG+R++ D+VE+ GI+R + + +AD +L Sbjct: 245 AAIVTEIAGTTRDVLSEHIHIDGMPLHIIDTAGLRDSPDVVEQIGIERAWQAINDADRVL 304 Query: 304 LL-----------KEINSKKEISFPKNIDFIFIGTKSDL------------YSTYTEEYD 340 + +I + P N+ I K+DL Y T+T Sbjct: 305 FMVDSTESDSSDPHQIWPEFMAKLPDNMGVTIIKNKADLSGQQIGYDNNHGYPTFT---- 360 Query: 341 HLISSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNE 397 IS+ G+E + +K + N + F + +RH+ + +L + L E Sbjct: 361 --ISAANKIGIELVSAHLKDCMGFNTTSEGQFI--ARRRHVLAIETAANHLHTGKSQLEE 416 Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G +++AE LRLA ++L +ITG + LL IFS FCIGK Sbjct: 417 HFAG-ELLAEELRLAQLALNEITGEFSSDDLLGKIFSSFCIGK 458 >gi|218767437|ref|YP_002341949.1| tRNA modification GTPase TrmE [Neisseria meningitidis Z2491] gi|14195278|sp|Q9JWB7|MNME_NEIMA RecName: Full=tRNA modification GTPase mnmE gi|121051445|emb|CAM07738.1| probable thiophene and furan oxidation protein [Neisseria meningitidis Z2491] gi|319409699|emb|CBY90002.1| tRNA modification GTPase TrmE [Neisseria meningitidis WUE 2594] Length = 448 Score = 263 bits (672), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 166/456 (36%), Positives = 254/456 (55%), Gaps = 24/456 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+ TI AV+T + +IR+SG + + + +C K P PR A+ F DG+ Sbjct: 1 MSDNVPTIAAVATAPGRGGVGVIRISGKNLLPMAQALCGKT-PKPRVATYADFTDEDGQA 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D GLL+ F +P SFTGED E HGG V++ +L ++ RLA PGEF++RAF N Sbjct: 60 IDSGLLLFFAAPASFTGEDVIELQGHGGPVVMDMLLNRCLEL-GARLAEPGEFTKRAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE +ADLI + + RL++ + G+ S ++ L +R +EA LDF E Sbjct: 119 DKLDLAQAEGVADLIDASSRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEATLDFPE 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E D+ + + + L+ + ++ + G I+R G +V++G N GKSSL NALA Sbjct: 179 E-DIDFLEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 +VAIVTDI GTTRD + + ++G V I DTAG+RETDD+VE+ GI+R+ V AD Sbjct: 238 GDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEAD 297 Query: 301 LILLLKE----INSKKEI---SFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347 + L+L + +N K + P + I I +KSDL++ + +S+ T Sbjct: 298 VALVLVDPREGLNEKTRAILDALPLELKRIEIHSKSDLHAHAAGGFGTGAETVIALSAKT 357 Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG---LDI 404 G+GL+ L + + + + + RH+ L L +A+L CG +++ Sbjct: 358 GDGLDALKRTLLREAGWQGESEGLFL-ARTRHVNALKAAQEELSLAAL----CGNHQIEL 412 Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 AE+LRLA V+ G+ITG + LL +IFS+FCIGK Sbjct: 413 FAEHLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448 >gi|329118565|ref|ZP_08247269.1| tRNA modification GTPase TrmE [Neisseria bacilliformis ATCC BAA-1200] gi|327465300|gb|EGF11581.1| tRNA modification GTPase TrmE [Neisseria bacilliformis ATCC BAA-1200] Length = 454 Score = 263 bits (672), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 165/461 (35%), Positives = 250/461 (54%), Gaps = 28/461 (6%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+ +TI AV+T + +IR+SG + + I K P PR A F+ + R Sbjct: 1 MSATPQTIAAVATAPGRGGVGVIRISGKHLLPLAQQISGGKTPQPRLALYTDFYDAEKRT 60 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D GL++ F +P SFTGED E HGG V+ +L ++ RLA PGEF++RAF N Sbjct: 61 IDSGLMLYFAAPASFTGEDVIELQGHGGPVVMQMLLSRCLEL-GARLAEPGEFTKRAFLN 119 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AES+ADLI + ++ R+++ + G S +D L +R +EA LDF E Sbjct: 120 NKLDLAQAESVADLIDASSQSAARMAVRSLKGAFSQHIHALVDDLITLRMLVEATLDFPE 179 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E D+ + + L+ + + ++Q + G ++R G +V++G N GKSSL NALA Sbjct: 180 E-DIDFLEEADARGKLENLQGRLKAVLAQAQQGAVLREGMNVVLVGAPNVGKSSLLNALA 238 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 D+AIVTDI GTTRD + + L+G V I+DTAG+R+TDD VEK GI+R+ + AD Sbjct: 239 GDDIAIVTDIAGTTRDTVREQITLDGVPVHITDTAGLRDTDDTVEKIGIERSGKALAQAD 298 Query: 301 LILLL----KEINSKKE---ISFPKNIDFIFIGTKSDLYSTYTEEYDHL----------- 342 + L+L + +N K + P N+ I + K DL E D L Sbjct: 299 VALILIDPAEGLNQKTRDILAALPGNLKKIEVHNKIDLSGGTPEFSDVLCSESGADTLIR 358 Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG- 401 +S+ TG GL+ L + + + + + + +RH L LE A+ CG Sbjct: 359 LSAKTGAGLDLLKRALLQQIGWQGESEGLFL-ARRRHTAALEAAQTELEHAA----RCGN 413 Query: 402 --LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++++AE+LRLA + +ITG + LL +IFS+FCIGK Sbjct: 414 HQIELLAEHLRLAQAACSEITGEFTADDLLGVIFSRFCIGK 454 >gi|198453278|ref|XP_002137635.1| GA27334 [Drosophila pseudoobscura pseudoobscura] gi|198132291|gb|EDY68193.1| GA27334 [Drosophila pseudoobscura pseudoobscura] Length = 493 Score = 263 bits (672), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 168/474 (35%), Positives = 265/474 (55%), Gaps = 44/474 (9%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFI--CKKKKPFPRKASLRYFF-GLDGRILDK 63 TI+++S+G + +S+IR+SGP + I C +P R+A L+ FF + ++D+ Sbjct: 24 TIYSLSSGHVKCGVSVIRVSGPQTKRALRAIVGCNDYEPKARQAYLKSFFHPISKEMIDR 83 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 GLL+ FP P SFTGED+ EF VHG +AV+ +L+ L ++ LR A PGEF++RAF GK+ Sbjct: 84 GLLLWFPGPASFTGEDACEFQVHGSLAVIAAMLDALGRLDGLRPAEPGEFTKRAFFGGKL 143 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL E E LADLI +ETE QR+ ++ +G L LY +W +L + +EA +DF+EEE Sbjct: 144 DLTEVEGLADLIHAETEAQRKQALLQSTGALGRLYNKWRKRLIRCAAHLEAYIDFAEEEQ 203 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 ++ ++ ++ ++ +I +H++ + GE++R+G + VI+G N GKSSL N L ++ Sbjct: 204 IEGGVILQLTKELKAVRGEIRNHLNDQRQGELLRDGVRTVIIGAPNVGKSSLLNLLCQRS 263 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEVENADLI 302 V+IVT+ GTTRD++ + GY V SDTAG+R T D +E+EG+ R + +DLI Sbjct: 264 VSIVTEQAGTTRDIIETMHNFGGYPVIFSDTAGLRRNTADSIEREGMARAKKCLAESDLI 323 Query: 303 LLLKEINSKKEISFPKNIDFIF------IGTKSDLYSTYTEEYDHLISSFTGE-GLEEL- 354 LLL + + +E+ + + + SDL S E+ L+++ T LEE Sbjct: 324 LLLTDAMAVRELDSNETVAGYVESYLNELDIASDLCS---EKRVQLVANKTDTLSLEECH 380 Query: 355 -INKIKSILSNKFKKLPFSIPS-------------------HKR--HLYHLSQTVRYLEM 392 ++K+ SILS K P ++ + H R + + Q R +E Sbjct: 381 RLDKLSSILSISCHK-PANMATFLNALEQQLQELCGTPRAEHPRITNTRYRQQLERCIEN 439 Query: 393 ASLNEKDCGLD------IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + +D D I A LR + + +ITG V E +LD++F FCIGK Sbjct: 440 IDIFLRDYKPDVFPDMAIAAAKLRNSVRCIERITGHVSCEDILDVVFKDFCIGK 493 >gi|292493916|ref|YP_003529355.1| tRNA modification GTPase TrmE [Nitrosococcus halophilus Nc4] gi|291582511|gb|ADE16968.1| tRNA modification GTPase TrmE [Nitrosococcus halophilus Nc4] Length = 458 Score = 263 bits (671), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 167/451 (37%), Positives = 252/451 (55%), Gaps = 22/451 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A++T I ++R+SGP C QV + I + P PR A+ F +G +D+GL Sbjct: 14 DTIAAIATPPGRGGIGVVRVSGPLCRQVAKHITGRLPP-PRYAAFSRFRDGEGETIDRGL 72 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + FPSP SFTGED E HGG V++ +L + ++ +RLA PGEFS RAF N KIDL Sbjct: 73 ALYFPSPHSFTGEDVLELQGHGGPVVMDWLLSCVLQL-GVRLARPGEFSERAFLNNKIDL 131 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED-- 183 +AE++ADLI S +E R ++ + GE S+ D+L +R +EAD+DFS+E+ Sbjct: 132 AQAEAIADLIESASEQAARSALRSLHGEFSAQIQDLRDQLIELRCLVEADIDFSDEDIDF 191 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 ++ + E L ++ + I QG L +R G ++V++G N GKSSL N LA + Sbjct: 192 IEQGAVAERLQELQSILRRIHRSARQGAL---LREGIRVVLVGRPNVGKSSLHNRLAGFE 248 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303 AIVTD+PGTTRD+L + ++G +++SDTAG+ ++ DI+E+EG++RT E NAD +L Sbjct: 249 AAIVTDVPGTTRDLLREHITIDGLPIRLSDTAGLHDSMDIIEQEGMRRTREEFTNADHVL 308 Query: 304 L-------LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFTGEG 350 L L E+ P N+ I K DL E + +S TG G Sbjct: 309 LIADDQVGLTELEQSILGELPDNVSHTLILNKIDLSGASAERREDSQRVVLRLSVLTGAG 368 Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL-DIIAENL 409 ++ L+ ++K + + + + +RHL L + + A K+ G +++AE L Sbjct: 369 MDLLLQRLKECAGFDGEGEGYFL-ARRRHLEALQRAGAAVAAAGEILKEEGPEEMLAEEL 427 Query: 410 RLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 R A +L +ITG + LL IFS FCIGK Sbjct: 428 RQAQNALAEITGEYRSDDLLGEIFSTFCIGK 458 >gi|238921763|ref|YP_002935278.1| tRNA modification GTPase TrmE [Edwardsiella ictaluri 93-146] gi|238871332|gb|ACR71043.1| probable tRNA modification GTPase TrmE, putative [Edwardsiella ictaluri 93-146] Length = 455 Score = 263 bits (671), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 165/462 (35%), Positives = 251/462 (54%), Gaps = 29/462 (6%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M +TI A +T + I+R+SGP Q K P PR A F DG Sbjct: 1 MISSSDTIVAQATAPGRGGVGILRVSGPQA-QAVAMALLGKLPKPRYADYLPFRDHDGTP 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG +++ +L+ + ++P LR+A PGEFS RAF N Sbjct: 60 LDQGIALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILQLPELRIARPGEFSERAFLN 119 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + +E R ++ + G S+ Q ++ L H+R ++EA +DF + Sbjct: 120 DKMDLAQAEAIADLIDASSEQAARSAVNSLQGVFSARIHQLVESLIHLRIYVEAAIDFPD 179 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + S +V + + ++++ ++ + G ++R G K+VI G NAGKSSL NALA Sbjct: 180 EE-IDFLSDGKVEAHLNAVMDELAGVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 238 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+E AD Sbjct: 239 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIERAD 298 Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTYTEEYD---HL---I 343 +L + + + P ++ + K+D+ D H + Sbjct: 299 RVLFMVDGTTTDATDPAAIWPDFIARLPASLPITVVRNKADVTGETLGISDCDGHTLVRL 358 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL- 402 S+ TG G++ L + +K + +L + +RHL L Q +L+ KD L Sbjct: 359 SARTGAGVDVLRDHLKRSMGFD-TRLEGGFLARRRHLQALDQAALHLQQG----KDQLLG 413 Query: 403 ----DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LRLA SL +ITG + LL IF+ FCIGK Sbjct: 414 AMAGELLAEELRLAQQSLSEITGEFTSDDLLGRIFTSFCIGK 455 >gi|326573502|gb|EGE23468.1| tRNA modification GTPase TrmE [Moraxella catarrhalis O35E] Length = 466 Score = 263 bits (671), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 169/464 (36%), Positives = 262/464 (56%), Gaps = 37/464 (7%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66 TI A+++ + IIRLSG +++ + ++ PR A F+G +G ++D+G++ Sbjct: 10 TIAAIASPIGQGGVGIIRLSGKDAYRIGCLMTRRSNLIPRMAYFGGFYGQEG-VIDEGVI 68 Query: 67 IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126 I F +P SFTGED E HGG+ + N +L + ++ R A GEFS RAFEN KIDL+ Sbjct: 69 IYFKAPHSFTGEDVVELQGHGGMVLQNMLLARVFEL-GARQAAAGEFSYRAFENDKIDLV 127 Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186 +AE+++D IS+ + Q ++ ++GE S + +DKL H+R ++EA +DF EEEDV Sbjct: 128 QAEAISDAISATSVAQATSAIRSLTGEFSQKINELLDKLVHLRLYVEASIDFPEEEDVDF 187 Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246 S + N + + + I ++ K G+++R+G +V+ G NAGKSSL N L+ + AI Sbjct: 188 LSDGIIENKLTEILSGIDRILATAKQGQLLRDGVHVVLAGKPNAGKSSLLNRLSGTERAI 247 Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306 VT+I GTTRD L L L G V ++DTAG+R+TDD VEK GIKR F + AD+++++ Sbjct: 248 VTEIAGTTRDTLEETLILNGLTVHLTDTAGLRKTDDHVEKIGIKRAFDAIRQADVLMMVY 307 Query: 307 EINSKKE-ISFPKNI---------------DFIFIGTKSDL--------YSTYTEEYDHL 342 ++ ++ + ++ + I + KSDL S T+ L Sbjct: 308 DVTTETDPLALADQLFCEGVTEDVGDIIRQKLILVANKSDLLISKPVLQVSCETKSAPKL 367 Query: 343 --ISSFTGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLN 396 +S TG GL+ELI IL+ K F S+ + RHL L++ Y A L Sbjct: 368 VYVSCETGVGLDELIE----ILTQKVGFHPPENSLIARTRHLDALNRAKGYAIEAYEQLT 423 Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G +++AE+LR + +LG+ITG + ++LL IFS FCIGK Sbjct: 424 IYHAG-ELVAESLRQSQQALGEITGQMSADELLGKIFSSFCIGK 466 >gi|15606214|ref|NP_213591.1| tRNA modification GTPase TrmE [Aquifex aeolicus VF5] gi|6647876|sp|O67030|MNME_AQUAE RecName: Full=tRNA modification GTPase mnmE gi|2983408|gb|AAC06992.1| thiophene and furan oxidation protein [Aquifex aeolicus VF5] Length = 448 Score = 263 bits (671), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 175/453 (38%), Positives = 261/453 (57%), Gaps = 23/453 (5%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQ-VCEFICKKKKPFPRKASLRYFFGLDGRILDK 63 +E I A++T SAI I+RLSG V +F K++ PR A + G LD+ Sbjct: 2 REPIVAIATPYGESAIGIVRLSGKGVLDLVKKFFKTKREIKPRYAHFGVLYDDKGEELDE 61 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 G+LI + +P S+TGED E ++HG ++ LE L RLA PGEF++RAF NGK+ Sbjct: 62 GVLIYYKAPHSYTGEDMVELNLHGNPRILKRALE-LFVNAGARLAEPGEFTKRAFLNGKL 120 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL +AE++A+LIS++TE+ R+++++ + GELS + L + +++EAD++F+EE D Sbjct: 121 DLTQAEAVAELISAKTELARKVALKQLHGELSKHIRPLRETLLELLAYVEADIEFAEE-D 179 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 + + ++V+ + + I+ + K G+ IR G K+ I+G N GKSSLFNAL K++ Sbjct: 180 IPTLTKEQVIQMVDKVIEGINELLKTAKTGKFIREGVKLAIVGRPNVGKSSLFNALLKEE 239 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303 AIVTDI GTTRD + L ++G V++ DTAGIRET D+VE+ G++R+ +V+ ADLIL Sbjct: 240 RAIVTDIAGTTRDFIEETLQIKGVPVRLVDTAGIRETKDLVERIGVERSKQKVKEADLIL 299 Query: 304 LLKEINSKKEISFP--------KNIDFIFIGTKSDL-----YSTYTEEYDHLISSFTGEG 350 + I++ +EI+ K D I + K DL + E +S+ G G Sbjct: 300 FV--IDASQEITEEDLRIYEEIKEKDHIVVANKVDLGIRANLEKFKGEKIVKVSALKGTG 357 Query: 351 LEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAE 407 LEEL +I K + +N + + I RH L + LE EKD +I Sbjct: 358 LEELSEEILKKVGANLEESVNIYISV--RHETLLKKAKEVLERFKEEFREKDISPEIAML 415 Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +LR AS LG+I G + E LL IFS FCIGK Sbjct: 416 DLREASDYLGEILGEITTEDLLGKIFSTFCIGK 448 >gi|192361438|ref|YP_001984273.1| tRNA modification GTPase TrmE [Cellvibrio japonicus Ueda107] gi|190687603|gb|ACE85281.1| tRNA modification GTPase TrmE [Cellvibrio japonicus Ueda107] Length = 455 Score = 263 bits (671), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 171/462 (37%), Positives = 259/462 (56%), Gaps = 29/462 (6%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF-PRKASLRYFFGLDGR 59 MN +TI A++T + I+R+SGP + E + P PR A F G Sbjct: 1 MNPNTDTIAAIATATGRGGVGIVRISGPKARFIAERLLGI--PLQPRHAHFCDFRSHSGD 58 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 LD+G+ + FP+P SFTGED E HGG +++ +L E+ ++ +RLA PGEFS RAF Sbjct: 59 TLDQGIALFFPNPHSFTGEDVLELQGHGGPVILDLLLREILQL-GVRLARPGEFSERAFL 117 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 N K+DL +AE++ADLI + TE R ++ + G S ++ L H+R ++EA +DF Sbjct: 118 NDKLDLAQAEAIADLIDATTEQAARNALHSLQGAFSKRIQDLVESLIHLRIYVEASIDFP 177 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 EEE + S +V D+ + + + S + + G ++R+G ++VI G NAGKSSL NAL Sbjct: 178 EEE-IDFLSDGKVARDLDDICHRLDSVFKEARQGALVRDGMRVVIAGRPNAGKSSLLNAL 236 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 + ++ AIVT I GTTRDVL + +EG + I DTAG+R++ D VE+ GI+R + E++ A Sbjct: 237 SGRESAIVTPIEGTTRDVLREHIHIEGMPLHIIDTAGLRDSPDEVEQIGIQRAWSEIQQA 296 Query: 300 DLILLLKEINSKKEIS----FPKNID-------FIFIGTKSDLYSTY------TEEYDHL 342 D +LLL + E +P+ +D + K DL T D+L Sbjct: 297 DRVLLLVDSRHTAETDPRLIWPEFVDKLDDPHKITLVRNKIDLSGEQAGLFENTRGQDYL 356 Query: 343 -ISSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEK 398 IS+ TG G++ L + +K+I+ N + F+ + +RHL L + +L A L Sbjct: 357 GISAATGSGMDALKDHLKAIVGFNASGEGGFT--ARRRHLDALERAQHFLNAGQAQLQGF 414 Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G +++AE+LR A +LG+ITG + LL IFS FCIGK Sbjct: 415 AAG-ELLAEDLRQAQHALGEITGEFTPDDLLGRIFSSFCIGK 455 >gi|238759577|ref|ZP_04620739.1| tRNA modification GTPase mnmE [Yersinia aldovae ATCC 35236] gi|238702236|gb|EEP94791.1| tRNA modification GTPase mnmE [Yersinia aldovae ATCC 35236] Length = 454 Score = 263 bits (671), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 167/455 (36%), Positives = 248/455 (54%), Gaps = 25/455 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + I+R+SG + V + + K P PR A F +DG LD+G+ Sbjct: 5 DTIVAQATPPGRGGVGILRVSGRAAATVAQAVLGKL-PKPRYADYLPFKDVDGSTLDQGI 63 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + FP P SFTGED E HGG +++ +L+ + +P LR+A PGEFS RAF N K+DL Sbjct: 64 ALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILALPELRIARPGEFSERAFLNDKLDL 123 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E R ++ + G S Q ++ LTH+R ++EA +DF +EE + Sbjct: 124 AQAEAIADLIDASSEQAARSAVNSLQGAFSVRIHQLVEALTHLRIYVEAAIDFPDEE-ID 182 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S ++ + + ++ ++ + G ++R G K+VI G NAGKSSL NALA ++ A Sbjct: 183 FLSDGKIEGQLNGVMAELEQVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAA 242 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+E AD +L + Sbjct: 243 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAGDEVERIGIERAWNEIEQADRVLFM 302 Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDH---LISSFTG 348 + + P + + K+D+ TE H +S+ TG Sbjct: 303 VDGTTTDATEPAAIWPEFMARLPATLPITVVRNKADITGETLGLTEVNGHSLIRLSARTG 362 Query: 349 EGLEELINKIKSILSNKF-KKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDII 405 EG++ L N +K LS F + RHL L ++L L G +++ Sbjct: 363 EGIDLLRNHLK--LSMGFTSNTEGGFLARSRHLQALEAAAQHLVQGHEQLVSAYAG-ELL 419 Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 AE LRLA SL +ITG + LL IFS FCIGK Sbjct: 420 AEELRLAQQSLSEITGEFSSDDLLGRIFSSFCIGK 454 >gi|238793137|ref|ZP_04636765.1| tRNA modification GTPase mnmE [Yersinia intermedia ATCC 29909] gi|238727510|gb|EEQ19036.1| tRNA modification GTPase mnmE [Yersinia intermedia ATCC 29909] Length = 454 Score = 263 bits (671), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 164/454 (36%), Positives = 247/454 (54%), Gaps = 23/454 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + I+R+SG + +V + + K P PR A F DG LD+G+ Sbjct: 5 DTIVAQATPPGRGGVGILRVSGRAAAEVAQAVLGKL-PKPRYADYLPFKDTDGSTLDQGI 63 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + FP P SFTGED E HGG +++ +L+ + +P LR+A PGEFS RAF N K+DL Sbjct: 64 ALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILALPGLRIARPGEFSERAFLNDKLDL 123 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E R ++ + G S Q ++ LTH+R ++EA +DF +EE + Sbjct: 124 AQAEAIADLIDASSEQAARSAVNSLQGAFSVKIHQLVEALTHLRIYVEAAIDFPDEE-ID 182 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S ++ + + D+ ++ + G ++R G K+VI G NAGKSSL NALA ++ A Sbjct: 183 FLSDGKIEGQLNGVMADLEQVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAA 242 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+E AD +L + Sbjct: 243 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWNEIEQADRVLFM 302 Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDH---LISSFTG 348 + + P + + K+D+ TE H +S+ TG Sbjct: 303 VDGTTTDATEPAAIWPEFMARLPSTLPITVVRNKADVTGESLGLTEVNGHSLIRLSARTG 362 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIA 406 EG++ L + +K + + +RHL L ++L L G +++A Sbjct: 363 EGIDLLRSHLKQSMGFT-SNTEGGFLARRRHLQALETAAQHLVQGHEQLVSAYAG-ELLA 420 Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E LRLA SL +ITG + LL IFS FCIGK Sbjct: 421 EELRLAQQSLSEITGEFSSDDLLGRIFSSFCIGK 454 >gi|195331616|ref|XP_002032497.1| GM23491 [Drosophila sechellia] gi|194121440|gb|EDW43483.1| GM23491 [Drosophila sechellia] Length = 493 Score = 262 bits (670), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 165/478 (34%), Positives = 258/478 (53%), Gaps = 52/478 (10%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK--PFPRKASLRYFFGLDGR-ILDK 63 TI+++S+G + +S+IR+SGP + I K+ P R+A L+ F+ + ++D+ Sbjct: 24 TIYSLSSGHVKCGVSVIRVSGPQTKKALRAIIANKEYEPKARQAYLKSFYHPASKEMIDR 83 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 GLL+ FP P SFTGEDS EF VHG +AV+ +L+ L K+ LR A PGEF++RAF GK+ Sbjct: 84 GLLLWFPGPASFTGEDSCEFQVHGSLAVIAAMLDALGKVDGLRPAEPGEFTKRAFFGGKL 143 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL E E LADLI +ETE QR+ ++ +G L+ LY W +L + +EA +DF+EEE Sbjct: 144 DLTEVEGLADLIHAETEAQRKQALLQSTGALARLYDNWRRRLIRCAAHLEAYIDFAEEEQ 203 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 ++ ++ ++ +K +I H+S + GE++R+G + VI+G N GKSSL N L ++ Sbjct: 204 IEGGIILQLGKELKAVKREIREHLSDQRQGELLRDGVRTVIIGAPNVGKSSLLNLLCRRS 263 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEVENADLI 302 V+IVTD GTTRD++ + GY V SDTAG+R T D +E+EG++R + +DLI Sbjct: 264 VSIVTDQAGTTRDIIETMHNFGGYPVVFSDTAGLRRYTTDSIEQEGMQRAKNCLVQSDLI 323 Query: 303 LLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362 LLL E +++ + + +Y E D + +G+ L+ + NK ++ Sbjct: 324 LLLAEAKHIAQLTHDDAV--------APYVDSYLGELDIPLDMCSGKRLQLVANKTDTLT 375 Query: 363 SNKFKKLP-----FSIPSHK------------RHLYHL-----------------SQTVR 388 + ++L +I HK + L L Q R Sbjct: 376 EEEHQQLDKLSNVLAISCHKPDKMAVFLGSLEKQLQELCGEPRAENPRITNTRYRQQLER 435 Query: 389 YLEMASLNEKDCGLD------IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +E + +D D I A LR + + +ITG + E +LD++F FCIGK Sbjct: 436 CIENIDIFLRDYRPDVYPDMAIAASKLRNSVRCIERITGHISCEDILDVVFKDFCIGK 493 >gi|212712606|ref|ZP_03320734.1| hypothetical protein PROVALCAL_03701 [Providencia alcalifaciens DSM 30120] gi|212684822|gb|EEB44350.1| hypothetical protein PROVALCAL_03701 [Providencia alcalifaciens DSM 30120] Length = 454 Score = 262 bits (670), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 171/455 (37%), Positives = 250/455 (54%), Gaps = 25/455 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + I+R+SGP V E + K P PR A F DG +LD+G+ Sbjct: 5 DTIVAQATAPGRGGVGILRVSGPQAALVAETVLGKL-PKPRYADYLPFRDADGSVLDQGI 63 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 I FP P SFTGED E HGG +++ +L + + N+R+ANPGEFS RAF N K+DL Sbjct: 64 AIYFPGPNSFTGEDVLELQGHGGPVILDLLLRRILTIANIRIANPGEFSERAFLNDKLDL 123 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E R +M + G SS Q ++ LTH+R ++EA +DF +EE + Sbjct: 124 AQAEAIADLIDASSEQAARSAMNSLQGAFSSHIHQLVEALTHLRIYVEAAIDFPDEE-ID 182 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S ++ + + D+ SQ + G ++R G K+VI G NAGKSSL NALA ++ A Sbjct: 183 FLSDGKIEAKLNEVVADLDQVRSQARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAA 242 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+E AD +L + Sbjct: 243 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWKEIEQADRVLFM 302 Query: 306 -----------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTE-----EYDHL-ISSFTG 348 +EI + P+ + I K+D E Y + +S+ Sbjct: 303 VDSTTTDATEPQEIWPEFMARLPETLPVTVIRNKADKTGESVEFVADARYPLIRLSAREE 362 Query: 349 EGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDII 405 +G++ L + +K + N + F + +RHL L+ +L L G +++ Sbjct: 363 KGIDLLRDHLKETMGFNSNTEGGFL--ARRRHLQALNNAATHLAQGYDQLVNARSG-ELL 419 Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 AE LRLA L +ITG + LL IFS FCIGK Sbjct: 420 AEELRLAQQELSEITGEFTSDDLLGRIFSSFCIGK 454 >gi|308188770|ref|YP_003932901.1| tRNA modification GTPase [Pantoea vagans C9-1] gi|308059280|gb|ADO11452.1| tRNA modification GTPase [Pantoea vagans C9-1] Length = 454 Score = 262 bits (670), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 163/459 (35%), Positives = 250/459 (54%), Gaps = 24/459 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+H +TI A +T + I+R+SG +V + K P PR A F DG + Sbjct: 1 MSH-SDTIVAQATPPGRGGVGILRVSGAQAAEVARQLLGKL-PKPRYADYLPFTDSDGSV 58 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG +++ +L+ + +P +R+A PGEFS RAF N Sbjct: 59 LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRIVALPGVRIAQPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + +E R ++ + G S+ ++ LTH+R ++EA +DF + Sbjct: 119 DKLDLAQAEAIADLIDASSEQAVRSAVNSLQGAFSTRVNHLVEALTHLRIYVEAAIDFPD 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + S + + + D+ + ++ + G ++R G K+VI G NAGKSSL NALA Sbjct: 179 EE-IDFLSDGRIEAQLNTVIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 +D AIVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+E AD Sbjct: 238 GRDAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQAD 297 Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYS---TYTEEYDH---LI 343 +L + + + P + + K+D+ TE H + Sbjct: 298 RVLFMVDGTTTDATEAAAIWPDFVSRLPPELPITVVRNKADVTGEALGLTEVNGHSLIRL 357 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCG 401 S+ T EG++ L + +K + + + +RHL L +L+ A L G Sbjct: 358 SARTSEGVDALRDHLKQSMGFA-GNMEGGFLARRRHLQALELAATHLQQGKAQLLGAQAG 416 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LR+A +L +ITG + LL IFS FCIGK Sbjct: 417 -ELLAEELRVAQQALSEITGEFTSDDLLGRIFSSFCIGK 454 >gi|302693689|ref|XP_003036523.1| hypothetical protein SCHCODRAFT_48069 [Schizophyllum commune H4-8] gi|300110220|gb|EFJ01621.1| hypothetical protein SCHCODRAFT_48069 [Schizophyllum commune H4-8] Length = 520 Score = 262 bits (670), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 166/465 (35%), Positives = 254/465 (54%), Gaps = 27/465 (5%) Query: 2 NHEKETIFAVSTGALPSAISIIRLSGPSCFQ------VCEFICKKKKPFPRKA-SLRYFF 54 + +++TI+A+ST I++IR+SGP Q V + + P P +A R Sbjct: 57 DAQRKTIYALSTPPGRGGIAVIRISGPDALQAWAKLVVLQGRQQSSLPKPWRAYRCRVVH 116 Query: 55 GLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114 +D GL I F P+SFT ED E HVH G A+V+ +L ++ +P R A GEF+ Sbjct: 117 PSHKEPIDDGLAIYFRGPKSFTTEDVVELHVHSGRAIVSSLLSAISALPFCRPAEAGEFT 176 Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174 +RAF G++DL +AE L DLI +ETE QRR+++ G +LY ++ H + +EA Sbjct: 177 KRAFLGGRLDLTQAEGLKDLIDAETEGQRRIALNAARGSNRALYEDLRNRAIHCLAQVEA 236 Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234 +DF E +D++ + + L + H++ G+ GEI+R G ++ + G NAGKSS Sbjct: 237 LIDFGEGDDIEEGVLDQARTEARELLASLHRHLADGRRGEIVRAGVRLALFGPPNAGKSS 296 Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294 L N LA+++ AIVT +PGTTRD+L + LDL G +++SDTAG+R T D VE GI+R Sbjct: 297 LLNCLAQREAAIVTPVPGTTRDILELGLDLGGLPIRVSDTAGLRATQDEVEAIGIERAKR 356 Query: 295 EVENADL---ILLLKEINSKKEISFPKNID--------FIF----IGTKSDLYSTYTEEY 339 +E AD+ IL L + I P+ + F+F + T L + T Sbjct: 357 AIEGADVALCILSLPDCVRDGGIQVPEYVKTMITPETYFLFNKSDLATPEQLRAAATVPR 416 Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFS----IPSHKRHLYHLSQTVRYLEMASL 395 + S T EG I+ + L +++ S + +H RH HL R+++ A L Sbjct: 417 SWVTSLITKEGTSSFIDGFTTELQSRYHLDGVSEDPPLITHARHRVHLESAARFVQ-AFL 475 Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D + + AE LR A+ ++GKI+G +DVE +LD +F+ FCIGK Sbjct: 476 ESSDEDVIMGAEELRYAAQAIGKISGHIDVEDILDSVFNDFCIGK 520 >gi|71277760|ref|YP_271687.1| tRNA modification GTPase TrmE [Colwellia psychrerythraea 34H] gi|123630481|sp|Q47U36|MNME_COLP3 RecName: Full=tRNA modification GTPase mnmE gi|71143500|gb|AAZ23973.1| tRNA modification GTPase TrmE [Colwellia psychrerythraea 34H] Length = 471 Score = 262 bits (670), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 164/455 (36%), Positives = 251/455 (55%), Gaps = 37/455 (8%) Query: 19 AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDG----RILDKGLLIVFPSPES 74 + IIR+SGP V + I K P RKA F ++LD+G+ + F +P S Sbjct: 21 GVGIIRVSGPEAKNVAQAILGKL-PEVRKAEYLPFLDCTSTDKTQVLDQGIALYFKAPNS 79 Query: 75 FTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADL 134 FTGED EF HGG +++ +L+ + P + +A PGEFS +AF N K+DL +AE++ADL Sbjct: 80 FTGEDVIEFQGHGGPVILDMLLKVILAQPKVIMAKPGEFSEQAFLNDKLDLTQAEAIADL 139 Query: 135 ISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194 I+S +E R ++ + G+ S L + ++ + H+R ++EA +DF EEE + + K+++ Sbjct: 140 INSSSEQAARSALHSLQGDFSKLVNEMVESIIHLRMYVEAAIDFPEEE-IDFLADKKIVT 198 Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254 D+ + + + Q + G IIR G ++VI G NAGKSSL NAL+ K AIVTDI GTT Sbjct: 199 DLKAIISRVEDVRKQAQQGSIIREGMRVVIAGRPNAGKSSLLNALSGKQTAIVTDIAGTT 258 Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314 RDVL + ++G + I DTAG+R++DD+VEK GI+R + E+ AD +LL+ + + I Sbjct: 259 RDVLAEQIHIDGMPLHIIDTAGLRDSDDVVEKIGIERAWQEINQADRVLLMVDASEDHSI 318 Query: 315 ----------------SFPKNIDFIFIGTKSDLYS--------TYTEEYDHLI---SSFT 347 P+ I I K+D+ T T+ H I S+ T Sbjct: 319 LEDDQDIKDFYPEFFAKLPEKIGLTLIRNKADVNDAKTGFTEFTDTDGTQHAIITLSAKT 378 Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN--EKDCGLDII 405 G+G++ L +K+I+ + + +RHL L T ++L + L+ E +I+ Sbjct: 379 GKGVDSLKEHLKTIMGYQ-GGTEGGFMARRRHLVALENTHQHL-LTGLDQLESYVAGEIL 436 Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 AE LR+ L +ITG + LL IFS FCIGK Sbjct: 437 AEELRICQQELDQITGEFTSDDLLGKIFSSFCIGK 471 >gi|221069752|ref|ZP_03545857.1| tRNA modification GTPase TrmE [Comamonas testosteroni KF-1] gi|220714775|gb|EED70143.1| tRNA modification GTPase TrmE [Comamonas testosteroni KF-1] Length = 475 Score = 262 bits (670), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 166/478 (34%), Positives = 251/478 (52%), Gaps = 42/478 (8%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 + + I A++T A+ I+R+SG + +C ++ PR+A+ F G Sbjct: 2 LPRHNDPIAAIATAPGRGAVGIVRVSGKGLAALVRTLCGRELK-PREATYLPFRDAGGSP 60 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAK---------MPNLRLA 108 +D GL I FP P S+TGED E HGG V+ +L E A+ + LRLA Sbjct: 61 IDHGLAIYFPGPHSYTGEDVLELQAHGGPVVLQLLLARCLEAAQSGSEDGRPVLTGLRLA 120 Query: 109 NPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHI 168 PGEF+ RAF N KIDL +AE++ADLI + TE R + +SG S D L H+ Sbjct: 121 QPGEFTERAFLNDKIDLAQAEAIADLIDASTEAAARSASRSLSGAFSQEIHVLRDALVHL 180 Query: 169 RSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHS 228 R +EA LDF EEE + + + L+ +++ +++ G ++R G K+VI G Sbjct: 181 RMLVEATLDFPEEE-IDFLQKADAFGQLERLRAQVTAVLARAHQGALLREGIKVVIAGQP 239 Query: 229 NAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEG 288 NAGKSSL NALA ++AIVT I GTTRD + + +EG + + DTAG+R++DD VE+ G Sbjct: 240 NAGKSSLLNALAGAELAIVTPIAGTTRDKVQQTIQIEGVPLHVIDTAGLRDSDDEVERIG 299 Query: 289 IKRTFLEVENADLILLLKEINSKKEIS---------------FPKNIDFIFIGTKSDL-- 331 I R + E+ AD +L L ++ ++ P + I + K+D+ Sbjct: 300 IARAWDEIAAADAVLFLHDLTRVEQADYAAADADIARTLQGRLPAQVPVIHVWNKTDMAA 359 Query: 332 ---YSTYTEEYDH---LISSFTGEGLEELINKIKSILSNKFKKLPFSIP-SHKRHLYHLS 384 S +T + + +S+ TG+GL+ L ++ + ++ P + + RH+ L Sbjct: 360 ADVQSRHTAQLNAQQIALSARTGDGLDALRKRLLEVAG--WQSAPEGLYLARARHVEALQ 417 Query: 385 QTVRYLEM--ASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +LEM A L + LD++AE LRLA +SL ITG + LL +IFS FCIGK Sbjct: 418 AVDVHLEMADAQLAAQSAHLDLLAEELRLAQLSLNSITGEFSSDDLLGVIFSSFCIGK 475 >gi|260221780|emb|CBA30686.1| tRNA modification GTPase mnmE [Curvibacter putative symbiont of Hydra magnipapillata] Length = 469 Score = 262 bits (670), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 168/471 (35%), Positives = 249/471 (52%), Gaps = 34/471 (7%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 ++ + I A++T + A+ I+RLSG S + + K PR+A+ F G+ Sbjct: 2 LSRHSDPIAAIATASGRGAVGIVRLSGKSLGAFTQALLGKAL-RPREATYLPFPDEKGQP 60 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGG-----------IAVVNGILEELAK---MPNLR 106 +D GL + FP P SFTGED E HGG +A+ N + E +P LR Sbjct: 61 IDHGLALFFPGPHSFTGEDVLELQAHGGPVVLQLLVARCLALANSVQTEGVSSVLLPGLR 120 Query: 107 LANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLT 166 +A GEF++RAF N K+DL +AE++ADLI + TE R + + +SG S G D L Sbjct: 121 IAEAGEFTQRAFLNNKLDLAQAEAIADLIDASTEAAARSASQSLSGAFSKEIGILRDALI 180 Query: 167 HIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILG 226 H+R +EA LDF EEE + + + + L+ + +++ G ++R G K+VI G Sbjct: 181 HLRMLVEATLDFPEEE-IDFLQKADAVGQLQRLQQALQQVLAKATQGALLREGLKVVIAG 239 Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEK 286 NAGKSSL NALA ++AIVT I GTTRD + + +EG + I DTAG+R +DD VEK Sbjct: 240 QPNAGKSSLLNALAGAELAIVTPIAGTTRDKVQETIQIEGVPLHIIDTAGLRASDDAVEK 299 Query: 287 EGIKRTFLEVENADLILLLKEINSKKEISF---------------PKNIDFIFIGTKSDL 331 GI+R + +E AD +L L ++ I + P +I I + KSD Sbjct: 300 IGIERAWQAIEAADAVLFLHDLTRSSAIEYIAADADIAGAIAEKLPASIPVIHVWNKSDA 359 Query: 332 YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391 + T +S+ TG GL+ L + + + + + + +RH+ L ++L+ Sbjct: 360 ATPETGLEGIFLSAKTGVGLDALRQNLLTAAGWQPAQ-SGAFMARQRHVQALHLVGQHLD 418 Query: 392 MAS--LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 MAS L LD++AE LRL +L ITG + LL +IFSKFCIGK Sbjct: 419 MASELLASGSAALDLLAEELRLGQNALNSITGEFGADDLLGVIFSKFCIGK 469 >gi|153873147|ref|ZP_02001823.1| tRNA modification GTPase [Beggiatoa sp. PS] gi|152070386|gb|EDN68176.1| tRNA modification GTPase [Beggiatoa sp. PS] Length = 444 Score = 262 bits (669), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 164/451 (36%), Positives = 257/451 (56%), Gaps = 18/451 (3%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M +++TI A++T A I +IR+SGP ++ + + P PR + F G Sbjct: 1 MLEQQDTIAALATPAGRGGIGVIRISGPKVPEIARAVLGQL-PKPRYGTFSDFLEPTGEQ 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+G+ + FP+P SFTGE E HGG V++ +L+ + K R+A PGEFS RAF N Sbjct: 60 IDQGIALYFPAPHSFTGEAVLELQGHGGPVVMDLLLKAVLKY-GARVARPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GKIDL +AE++ADLI S + R ++ + GE S +++L +RS+IEA +DF + Sbjct: 119 GKIDLAQAEAIADLIDSASTQAARCALRSLQGEFSHQIHSLVEQLIWLRSYIEAGIDFVD 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + + +VL+ + L + + + + + + G +++ G +IV++G N GKSSL N+LA Sbjct: 179 EE-IDLLADGQVLDRMKKLLHGLDTILDKAQQGYLLKEGMRIVLVGEPNVGKSSLLNSLA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVT +PGTTRDV+ + + G + I+DTAG+RET+D+VE EGI+RT L ++ AD Sbjct: 238 GRETAIVTPLPGTTRDVVRDQIQINGMPLHITDTAGLRETEDLVELEGIRRTKLALKEAD 297 Query: 301 LILLL---KEINSKKEISFPKNID--FIFIGTKSDL---YSTYTEEYDHLISSFTGEGLE 352 L+++L + N + +D + + K DL + EE +S+ TGEG+E Sbjct: 298 LVIVLLDDRHSNDSIHANLLAELDKPPLIVRNKIDLSGHRAGMNEEGILYLSAKTGEGIE 357 Query: 353 ELINKIKSILSNKF---KKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENL 409 +L K + K + + +RHL L Q L A + +++AE L Sbjct: 358 QL----KDYFTQKMGLHSSAEGTFMARRRHLDALQQAKIALTTALNHAHTYQTELLAEEL 413 Query: 410 RLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 R A +LG+ITG + LL IFS FCIGK Sbjct: 414 RQAQHALGEITGEFTADDLLGQIFSTFCIGK 444 >gi|300725383|ref|YP_003714722.1| GTPase [Xenorhabdus nematophila ATCC 19061] gi|297631939|emb|CBJ92664.1| GTPase involved in tRNA modification and in thiophene and furan oxidation [Xenorhabdus nematophila ATCC 19061] Length = 454 Score = 262 bits (669), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 166/457 (36%), Positives = 255/457 (55%), Gaps = 29/457 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + I+R+SG +V E + K P PR A F +DG +LD+G+ Sbjct: 5 DTIVAQATPPGRGGVGILRISGRKAAEVAEVVLGKL-PKPRYADYLPFRDMDGSVLDQGI 63 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 ++ FP P SFTGED E HGG +++ +L+ + + +R+ANPGEFS RAF N K+DL Sbjct: 64 VLYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTISGVRIANPGEFSERAFLNDKLDL 123 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E R +M + G S Q ++ LT++R ++EA +DF +EE + Sbjct: 124 AQAEAIADLIDASSEQAARSAMNSLQGTFSHQVHQMVETLTNLRIYVEAAIDFPDEE-ID 182 Query: 186 NFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 S ++ L++++ +++ S QG L +R G K+VI G NAGKSSL NALA + Sbjct: 183 FLSDGKIEAKLDEVIAELDNVRSQARQGSL---LREGMKVVIAGRPNAGKSSLLNALAGR 239 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 + AIVTDI GTTRDVL + ++G + + DTAG+RE D VE+ GI+R + E+E AD + Sbjct: 240 EAAIVTDIAGTTRDVLREHIHIDGMPLHVIDTAGLREASDEVERIGIERAWQEIEQADRV 299 Query: 303 LLLKEINSKKEI-----------SFPKNIDFIFIGTKSDLYSTYTEEYD----HLI--SS 345 L + + + I P ++ I K+D+ T D LI S+ Sbjct: 300 LFMVDSTTTDAIEPAQIWPEFMAKLPASLPVTVIRNKTDMTGEATGVSDVSGYSLIRLSA 359 Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLD 403 G+G++ L + +K + + + +RHL L+ +L+ L G + Sbjct: 360 REGKGIDLLRDHLKETMGFN-SNIEGGFLARRRHLQALNTAADHLQEGHQQLVFARSG-E 417 Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++AE LRLA +L +ITG + LL IFS FCIGK Sbjct: 418 LLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454 >gi|240122615|ref|ZP_04735571.1| tRNA modification GTPase TrmE [Neisseria gonorrhoeae PID332] gi|268681207|ref|ZP_06148069.1| thiophene and furan oxidation protein [Neisseria gonorrhoeae PID332] gi|268621491|gb|EEZ53891.1| thiophene and furan oxidation protein [Neisseria gonorrhoeae PID332] Length = 448 Score = 262 bits (669), Expect = 9e-68, Method: Compositional matrix adjust. Identities = 165/456 (36%), Positives = 253/456 (55%), Gaps = 24/456 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+ TI AV+T + +IR+SG + + + +C K P PR A+ F DG+ Sbjct: 1 MSDNVPTIAAVATAPGRGGVGVIRISGKNLLPMAQALCGKT-PEPRVATYADFTDADGQA 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D GLL+ F +P SFTGED E HGG V+ +L ++ RLA PGEF++RAF N Sbjct: 60 IDSGLLLFFAAPASFTGEDVIELQGHGGPVVMEMLLNRCLEL-GARLAEPGEFTKRAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE +ADLI + RL++ + G+ S ++ L +R +EA LDF E Sbjct: 119 DKLDLAQAEGVADLIDASGRSAARLALRSLKGDFSRRIHGLVEDLITLRMLVEAALDFPE 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E D+ + + + L+ + ++ + G I+R G +V++G N GKSSL NALA Sbjct: 179 E-DIDFLEAADARGKLDGLRRAVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 +V+IVTDI GTTRD + + ++G V I DTAG+RETDD+VE+ GI+R+ V AD Sbjct: 238 GDEVSIVTDIAGTTRDAVRERILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEAD 297 Query: 301 LILLLKE----INSKKEI---SFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347 + L+L + +N K + + P ++ I I +KSDL++ + +S+ T Sbjct: 298 VALVLVDPREGLNEKTRMILDTLPSDLKRIEIHSKSDLHAHAAGGFGTGAETVIALSAKT 357 Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG---LDI 404 G+GL+ L + + + + + RH+ L L +A L CG +++ Sbjct: 358 GDGLDALKRTLLCEAGWQGESEGLFL-ARTRHVNALKAAQEELSLAVL----CGNHQIEL 412 Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 AE+LRLA V+ G+ITG + LL +IFS+FCIGK Sbjct: 413 FAEHLRLAQVACGEITGEFTADDLLGVIFSRFCIGK 448 >gi|167519733|ref|XP_001744206.1| hypothetical protein [Monosiga brevicollis MX1] gi|163777292|gb|EDQ90909.1| predicted protein [Monosiga brevicollis MX1] Length = 477 Score = 262 bits (669), Expect = 9e-68, Method: Compositional matrix adjust. Identities = 159/467 (34%), Positives = 256/467 (54%), Gaps = 35/467 (7%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVC-EFICKKKKPFPRKASL-RYFFGLDGRILDKG 64 T++A+S+ + ++++R+SGP + + K+ P PR+A++ R L +LD+ Sbjct: 13 TVYALSSAPGKAGVAVVRISGPEALAAAGQLLGKRALPIPRQATVARLSDPLTDDLLDQA 72 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 L++ FP P SFTGED E H+HG AVV G+L+ L ++ L A PGEF++RAF +GK+ Sbjct: 73 LVLTFPGPRSFTGEDVVELHLHGSRAVVAGVLDALGRLQGLAPAPPGEFTKRAFAHGKLG 132 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L + E LADLIS+ET QR+ ++ + G+ L W +L H + +EA +DFSE+E++ Sbjct: 133 LTQVEGLADLISAETTSQRQQALRHLEGDAQKLLLGWRQELLHALALLEAYIDFSEDENI 192 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + + + + ++ H++ + G+ +R+G +IV+ G N GKSSL N +++ Sbjct: 193 EEDAFSSASEKVGHMVEEMRRHVADSRAGQRVRDGVRIVLSGLPNVGKSSLLNYFCRQER 252 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD--DIVEKEGIKRTFLEVENADLI 302 AIVTDIPGTTRD+LT+DL+L G+ V DTAGIR D D VE+EG++R NAD+ Sbjct: 253 AIVTDIPGTTRDLLTVDLELRGFPVIFVDTAGIRFGDQVDRVEQEGVRRAQEAAANADVR 312 Query: 303 LLLKEINSKKEI------------------------SFPKNIDFIFIGTKSDLYSTYTEE 338 + L++ + + + S P ++ + + S E Sbjct: 313 ICLQDATNPESLCCSTLKQGGVPCACLHGSAINADQSTPPHLLRVVNKCDAKPLSMELSE 372 Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS--HKRHLYHLSQTVRYLEMA--- 393 +S + L++L + + +P+ RH HL+ + LE A Sbjct: 373 GVLSVSCLERKNLDQLTTVLGDTVETLCHTASGEVPTVVRHRHQQHLTAALEALEQALVS 432 Query: 394 SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 S DC L +AE +R A LG +TG V ++++LDI+FS+FCIGK Sbjct: 433 SALSADCVL--MAEEMRYALSELGHLTGHVKLDEMLDIVFSEFCIGK 477 >gi|254509080|ref|ZP_05121183.1| tRNA modification GTPase TrmE [Vibrio parahaemolyticus 16] gi|219548013|gb|EED25035.1| tRNA modification GTPase TrmE [Vibrio parahaemolyticus 16] Length = 453 Score = 262 bits (669), Expect = 9e-68, Method: Compositional matrix adjust. Identities = 166/453 (36%), Positives = 249/453 (54%), Gaps = 21/453 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + IIR+SGP +V + + K PR A F DG LD+G+ Sbjct: 4 DTIVAQATAPGRGGVGIIRVSGPLAEKVAQEVTGKTL-RPRYAEYLPFTSQDGSQLDQGI 62 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + FP+P SFTGED E HGG V++ +++ + ++P +R A PGEFS RAF N K+DL Sbjct: 63 ALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILQIPGIRTARPGEFSERAFLNDKLDL 122 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E + +++ + G S ++ L H+R ++EA +DF EEE + Sbjct: 123 AQAEAIADLIDASSEEAAKSALQSLQGAFSQRIHTLVESLIHLRIYVEAAIDFPEEE-ID 181 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 + +V D+ + +++S+ + G I+R G K+VI G NAGKSSL NAL+ K+ A Sbjct: 182 FLADGKVAGDLQAIIDNLSAVRQEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKESA 241 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTDI GTTRDVL + ++G + I DTAG+R+ D VEK GI+R + E+ AD +L + Sbjct: 242 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVEKIGIERAWDEIAQADRVLFM 301 Query: 306 -----KEINSKKEI------SFPKNIDFIFIGTKS-----DLYSTYTEEYDHL-ISSFTG 348 + KEI P NI I K+ DL + + +S+ TG Sbjct: 302 VDGTTTDATDPKEIWPDFVDRLPDNIGMTVIRNKADQTGEDLGICHVNAPTLIRLSAKTG 361 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407 EG+E L + +K + + +RHL L + +L++ E +I+AE Sbjct: 362 EGVESLRSHLKECMGFAGGN-EGGFMARRRHLEALERAAEHLDIGQQQLEGYMAGEILAE 420 Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LR+A L +ITG + LL IFS FCIGK Sbjct: 421 ELRIAQQHLSEITGEFSSDDLLGRIFSSFCIGK 453 >gi|253690652|ref|YP_003019842.1| tRNA modification GTPase TrmE [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259495843|sp|C6DK97|MNME_PECCP RecName: Full=tRNA modification GTPase mnmE gi|251757230|gb|ACT15306.1| tRNA modification GTPase TrmE [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 454 Score = 262 bits (669), Expect = 9e-68, Method: Compositional matrix adjust. Identities = 162/454 (35%), Positives = 252/454 (55%), Gaps = 23/454 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + I+R+SG + +V + + K P PR A F +G LD+G+ Sbjct: 5 DTIVAQATPPGRGGVGILRVSGRAAAEVAQAVLGKL-PKPRHADYLPFRDANGTTLDQGI 63 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + FP P SFTGED E HGG +++ +L+ + +PN+R+A PGEFS RAF N K+DL Sbjct: 64 ALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPNVRIARPGEFSERAFLNDKLDL 123 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E R ++ + G S+ Q ++ LTH+R ++EA +DF +EE + Sbjct: 124 AQAEAIADLIDASSEQAARSALNSLQGVFSTRVNQLVEALTHLRIYVEAAIDFPDEE-ID 182 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S ++ + + + D+ + ++ G ++R G K+VI G NAGKSSL NALA ++ A Sbjct: 183 FLSDGKIESQLNGVMADLDAVRAEAHQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAA 242 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTDI GTTRDVL + ++G + I DTAG+R+ D VE+ GI+R + E+E AD +L + Sbjct: 243 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFM 302 Query: 306 -----------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD---H---LISSFTG 348 ++I + PK + + K+D+ D H +S+ TG Sbjct: 303 VDGTTTQATEPEQIWPEFMARLPKTLPITVVRNKADVTGETLGIEDVNTHSLIRLSARTG 362 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIA 406 +G++ L + +K + + +RHL L ++L L G +++A Sbjct: 363 DGVDTLRDHLKQSMGFT-SNTEGGFLARRRHLQALELAAQHLIQGKEQLVSAYAG-ELLA 420 Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E LRLA SL +ITG + LL IFS FCIGK Sbjct: 421 EELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 454 >gi|326571815|gb|EGE21821.1| tRNA modification GTPase TrmE [Moraxella catarrhalis BC7] Length = 466 Score = 262 bits (669), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 168/464 (36%), Positives = 261/464 (56%), Gaps = 37/464 (7%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66 TI A+++ + IIRLSG +++ + ++ PR A F+G +G ++D+G++ Sbjct: 10 TIAAIASPIGQGGVGIIRLSGKDAYRIGCLMTRRSNLIPRMAHFGGFYGQEG-VIDEGVI 68 Query: 67 IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126 I F +P SFTGED E HGG+ + N +L + ++ R A GEFS RAFEN KIDL+ Sbjct: 69 IYFKAPHSFTGEDVVELQGHGGMVLQNMLLARVFEL-GARQAAAGEFSYRAFENDKIDLV 127 Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186 +AE+++D IS+ + Q ++ ++GE S + +DKL H+R ++EA +DF EEEDV Sbjct: 128 QAEAISDAISATSVAQATSAIRSLTGEFSQKINELLDKLVHLRLYVEASIDFPEEEDVDF 187 Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246 + N + + + I ++ K G+++R+G +V+ G NAGKSSL N L+ + AI Sbjct: 188 LPDGIIENKLTEILSGIDRILATAKQGQLLRDGVHVVLAGKPNAGKSSLLNRLSGTERAI 247 Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306 VT+I GTTRD L L L G V ++DTAG+R+TDD VEK GIKR F + AD+++++ Sbjct: 248 VTEIAGTTRDTLEETLILNGLTVHLTDTAGLRKTDDHVEKIGIKRAFDAIRQADVLMMVY 307 Query: 307 EINSKKE-ISFPKNI---------------DFIFIGTKSDL--------YSTYTEEYDHL 342 ++ ++ + ++ + I + KSDL S T+ L Sbjct: 308 DVTTETDPLALADQLFCEGVTEDVGDIIRQKLILVANKSDLLISKPVLQVSCETKSAPKL 367 Query: 343 --ISSFTGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLN 396 +S TGEGL+ELI IL+ K F S+ + RHL L++ Y A L Sbjct: 368 VYVSCETGEGLDELIE----ILTQKVGFHPPENSLIARTRHLDALNRAKGYAIEAYEQLT 423 Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G +++AE+LR + +LG+I G + ++LL IFS FCIGK Sbjct: 424 IYHAG-ELVAESLRQSQQALGEIIGQMSADELLGKIFSSFCIGK 466 >gi|329297776|ref|ZP_08255112.1| tRNA modification GTPase TrmE [Plautia stali symbiont] Length = 454 Score = 262 bits (669), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 168/462 (36%), Positives = 251/462 (54%), Gaps = 30/462 (6%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+H +TI A +T + I+R+SG +V + + K P PR A F DG + Sbjct: 1 MSH-SDTIVAQATPPGRGGVGILRISGAKAAEVAQAVLGKL-PKPRYADYLPFNDADGSV 58 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG +++ +L+ + +P++R+A PGEFS RAF N Sbjct: 59 LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRIVALPSVRIAQPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + +E R ++ + G S ++ LTH+R ++EA +DF + Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSAVNSLQGAFSLYVKALVEALTHLRIYVEAAIDFPD 178 Query: 181 EE-DVQNFSSKEV-LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 EE D + EV LN ++ N + + QG L +R G K+VI G NAGKSSL NA Sbjct: 179 EEIDFLSDGKIEVQLNAVIGDLNGVRAEARQGSL---LREGMKVVIAGRPNAGKSSLLNA 235 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 LA ++ AIVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+E Sbjct: 236 LAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQ 295 Query: 299 ADLILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYS---TYTEEYDH--- 341 AD +L + + + P + + K+D+ TE H Sbjct: 296 ADRVLFMVDGTTTDATEANAIWPDFVARLPAALPITVVRNKADMTGETLGLTEVNGHSLI 355 Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401 +S+ TG G++ L +K + + + +RHL L +L+ E+ G Sbjct: 356 RLSARTGAGVDTLREHLKQSMGFA-GNMEGGFLARRRHLQALELAATHLQQG--KEQLLG 412 Query: 402 L---DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LRLA +L +ITG + LL IFS FCIGK Sbjct: 413 AWAGELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454 >gi|157804128|ref|YP_001492677.1| tRNA modification GTPase TrmE [Rickettsia canadensis str. McKiel] gi|166234816|sp|A8EZV9|MNME_RICCK RecName: Full=tRNA modification GTPase mnmE gi|157785391|gb|ABV73892.1| tRNA modification GTPase [Rickettsia canadensis str. McKiel] Length = 445 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 163/453 (35%), Positives = 256/453 (56%), Gaps = 27/453 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYF----FGLDGRIL 61 ETIFA S+ + +++ R+SGP +V + + +K K+ L Y+ F G ++ Sbjct: 2 ETIFAQSSAFGKAGVAVFRISGPKSLEVLQLLTGRKD---FKSRLMYYQQITFPESGELI 58 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121 D +++ F SP SFTGED AE + HG A+ ++ L +PN+RLA GEF++RAF N Sbjct: 59 DNAMVVYFKSPGSFTGEDVAEIYTHGSKAISIMLINALLNIPNIRLAEAGEFTKRAFLNN 118 Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181 K DL AE +ADLI++ET MQ R ++ G L LY W ++L I S +EA +DF + Sbjct: 119 KFDLTAAEGIADLINAETIMQHRQAIRQAGGALEELYNNWREQLLQIISLLEAYIDFP-D 177 Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 ED+ + +V N L N+IS++++ + GE++ +G K+ I+G NAGKSSL N L + Sbjct: 178 EDIPDSILNKVNNTHTNLINEISNYLNDNRRGELLNSGLKLAIIGPPNAGKSSLLNFLMQ 237 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENAD 300 +D+AIV++I GTTRD++ LD+ GY + + DTAGIR E+ DI+E+EGIKR + AD Sbjct: 238 RDIAIVSNIAGTTRDIIEGHLDIGGYPIILQDTAGIREESSDIIEQEGIKRAINSAKTAD 297 Query: 301 LILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEE----------YDHLISSFTGE- 349 + +++ + ID I T + E Y L S Sbjct: 298 IKIIMFDAEKLDSSINEGIIDLIDENTIIIINKIDLIEPSKIFLIEDKYKCLRVSIKNNI 357 Query: 350 GLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAE 407 L +++ I++I N F + P+ +++RH ++L Q + YL+ +L D L + E Sbjct: 358 ALNDILKNIENIAENMAGFTETPY--ITNQRHRHYLKQGLTYLKNFTL---DNDLVLATE 412 Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++R+ +G ITG ++V ++L IF FCIGK Sbjct: 413 DIRMTVRCIGTITGVINVNEILGEIFKNFCIGK 445 >gi|88860621|ref|ZP_01135258.1| predicted GTPase [Pseudoalteromonas tunicata D2] gi|88817216|gb|EAR27034.1| predicted GTPase [Pseudoalteromonas tunicata D2] Length = 454 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 166/454 (36%), Positives = 249/454 (54%), Gaps = 21/454 (4%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64 +ETI A +T + IIR+SG V E + K P R A F L G LD+G Sbjct: 4 QETIAAQATAPGRGGVGIIRVSGKLARSVAEQLLGKC-PKTRYAEYVPFKALSGDELDQG 62 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 + + F P SFTGED E HGG V++ +L+E+ K+ ++RLA PGEFS RAF N K+D Sbjct: 63 IALFFEGPNSFTGEDVLELQGHGGPVVLDMLLKEICKINDVRLAKPGEFSERAFMNDKLD 122 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ADLI++ +E + ++ + GE S ++++ H+R ++EA +DF +EE + Sbjct: 123 LTQAEAIADLINATSEQAAKSALHSLQGEFSKHISTLVEQVIHLRMYVEAAIDFPDEE-I 181 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 S +V D+ + + +S +Q K G IIR G ++VI G NAGKSSL NALA +D Sbjct: 182 DFLSDGKVSADLNAIISQLSEVTNQAKQGSIIREGMRVVIAGRPNAGKSSLLNALAGRDA 241 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIVTDI GTTRDVL + ++G + I DTAG+R++ DIVE+ GI+R + E++ AD +L Sbjct: 242 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDSPDIVEQIGIERAWDEIKQADRVLF 301 Query: 305 LKEINSKKEIS-----------FPKNIDFIFIGTKSDLYS---TYTEEYDHLISSFTG-- 348 + + + P N+ I K DL + E ++H + S + Sbjct: 302 MLDGTESTDTDPAAIWPEFIDKLPANLGITVIRNKIDLSGEQVSIQEHHNHPVISLSAKN 361 Query: 349 -EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIA 406 +G++ + +K + + + +RHL LS +L+ E +I+A Sbjct: 362 NQGIDLVREHLKQCMGYQ-GATEGGFMARRRHLEALSNAAYHLQTGKDQLEMHIAGEILA 420 Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E LRL L +ITG + LL IFS FCIGK Sbjct: 421 EELRLTQQFLNEITGEFTSDDLLGKIFSSFCIGK 454 >gi|268593483|ref|ZP_06127704.1| tRNA modification GTPase TrmE [Providencia rettgeri DSM 1131] gi|291310904|gb|EFE51357.1| tRNA modification GTPase TrmE [Providencia rettgeri DSM 1131] Length = 454 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 170/455 (37%), Positives = 250/455 (54%), Gaps = 25/455 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + I+R+SGP QV E + K P PR A F +G +LD+G+ Sbjct: 5 DTIVAQATPPGRGGVGILRVSGPKAAQVAEIVLGKL-PKPRYADYLPFRDEEGSVLDQGI 63 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + FP P SFTGED E HGG +++ +L + + +R+ANPGEFS RAF N K+DL Sbjct: 64 ALYFPGPNSFTGEDVLELQGHGGPVILDLLLRRILTIDGIRIANPGEFSERAFLNDKLDL 123 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E R +M + G SS Q ++ LTH+R ++EA +DF +EE + Sbjct: 124 AQAEAIADLIDASSEQAARSAMNSLQGAFSSHIHQLVEALTHLRIYVEAAIDFPDEE-ID 182 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S ++ + + D+ SQ + G ++R G K+VI G NAGKSSL NALA ++ A Sbjct: 183 FLSDGKIEAKLNEVVADLEQVRSQARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAA 242 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+E AD +L + Sbjct: 243 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWKEIEQADHVLFM 302 Query: 306 -----------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------ISSFTG 348 +EI + P + I K+D+ E D+ +S+ Sbjct: 303 VDSTTTNATEPQEIWPEFMARLPDELPVTVIRNKADMTGEPVEFIDNTRYPLIRLSAREE 362 Query: 349 EGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDII 405 +G++ L + +K + N + F + RHL L+ +LE L G +++ Sbjct: 363 KGIDLLRDHLKEAIGFNSNTEGGFL--ARSRHLQALNAAAVHLEQGYDQLVNARSG-ELL 419 Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 AE LRLA L +ITG + LL IFS FCIGK Sbjct: 420 AEELRLAQQELSEITGEFTSDDLLGRIFSSFCIGK 454 >gi|218931079|ref|YP_002348954.1| tRNA modification GTPase TrmE [Yersinia pestis CO92] gi|21363009|sp|Q8Z9U2|MNME_YERPE RecName: Full=tRNA modification GTPase mnmE gi|115349690|emb|CAL22671.1| putative thiophene and furan oxidation protein [Yersinia pestis CO92] Length = 454 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 163/454 (35%), Positives = 248/454 (54%), Gaps = 23/454 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + I+R+SG + +V + K P PR A F +DG LD+G+ Sbjct: 5 DTIVAQATPPGRGGVGILRVSGRAASEVAHAVLGKL-PKPRYADYLPFKDVDGSTLDQGI 63 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + FP P SFTGED E HGG +++ +L+ + +P LR+A PGEFS RAF N K+DL Sbjct: 64 ALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILALPGLRIARPGEFSERAFLNDKLDL 123 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E R ++ + G S+ Q ++ LTH+R ++EA +DF +EE + Sbjct: 124 AQAEAIADLIDASSEQAARSAVNSLQGAFSARIHQLVEALTHLRIYVEAAIDFPDEE-ID 182 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S ++ + + D+ ++ + G ++R G K+VI G NAGKSSL NALA ++ A Sbjct: 183 FLSDGKIEGQLNGVMADLEQVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAA 242 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTDI GTTRDVL + ++G + I DTAG+RE +D VE+ GI+R + E+E AD +L + Sbjct: 243 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREANDEVERIGIERAWNEIEQADRVLFM 302 Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYS---TYTEEYDH---LISSFTG 348 + + P + + K+D+ T+ H +S+ TG Sbjct: 303 VDGTTTDATEPAAIWPEFMARLPATLPITVVRNKADITGETLGLTKVNGHSLIRLSARTG 362 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIA 406 EG++ L + +K + + + HL L R+L L G +++A Sbjct: 363 EGIDLLRDHLKQSMGFT-SNTEGGFLARRPHLQALETAARHLIQGHEQLVSAYAG-ELLA 420 Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E LRLA SL +ITG + LL IFS FCIGK Sbjct: 421 EELRLAQQSLSEITGEFSSDDLLGRIFSSFCIGK 454 >gi|254436182|ref|ZP_05049689.1| tRNA modification GTPase TrmE [Nitrosococcus oceani AFC27] gi|207089293|gb|EDZ66565.1| tRNA modification GTPase TrmE [Nitrosococcus oceani AFC27] Length = 431 Score = 261 bits (667), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 160/436 (36%), Positives = 252/436 (57%), Gaps = 20/436 (4%) Query: 20 ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGED 79 + I+R+SGP C Q+ E + + P PR A+ +F G ILD+GL++ FP P SFTGED Sbjct: 1 MGIVRVSGPFCRQIAEQVTGRVPP-PRYATFCHFRNRYGEILDQGLILYFPGPHSFTGED 59 Query: 80 SAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET 139 E HGG A+++ +L + ++ +RLA PGEFS RAF N KIDL +AE++ADLI S + Sbjct: 60 VLELQGHGGPAIMDWLLSSVLQL-GVRLARPGEFSERAFLNNKIDLAQAEAIADLIESAS 118 Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFL 199 E R ++ + GE S+ ++LT +R +EA++DFS+E D+ V + + Sbjct: 119 EQAARSALRSLHGEFSAQIQTLREQLTELRCVVEANIDFSDE-DIDFIERGMVAERLKEI 177 Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259 ++ + S + G ++R G ++V+ G N GKSSL N LA + AIVTD+PGTTRD+L Sbjct: 178 QSTLQSIHRSARQGALLREGVRVVLAGRPNVGKSSLHNRLAGFEAAIVTDVPGTTRDLLR 237 Query: 260 IDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEI 314 ++ ++G + +SDTAG+ + D +E+EG++RT E+ +AD +LL+ + S ++ I Sbjct: 238 ENITIDGLPIHLSDTAGLHNSKDTIEQEGMRRTREELIHADHVLLVADDQSGLTEAEQAI 297 Query: 315 --SFPKNIDFIFIGTKSDLYSTYTEEYDHL------ISSFTGEGLEELINKIKSILS-NK 365 P ++ + I K DL ++ L +S+ TG G++ L ++K ++ Sbjct: 298 LDELPDDVTYTLIFNKIDLSGAPAGRWEELQGIALRLSALTGAGMDLLCQRLKECAGFDR 357 Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL-DIIAENLRLASVSLGKITGCVD 424 + FS + +RHL L + + +A D G +I+AE LR A +L +ITG Sbjct: 358 ESEGCFS--ARRRHLEALQRAGAAVVVARKILGDKGAEEILAEELRQAQNALAEITGEYR 415 Query: 425 VEQLLDIIFSKFCIGK 440 + LL IFS FCIGK Sbjct: 416 SDDLLGEIFSTFCIGK 431 >gi|127514790|ref|YP_001095987.1| tRNA modification GTPase TrmE [Shewanella loihica PV-4] gi|166234821|sp|A3QJT0|MNME_SHELP RecName: Full=tRNA modification GTPase mnmE gi|126640085|gb|ABO25728.1| tRNA modification GTPase trmE [Shewanella loihica PV-4] Length = 453 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 164/454 (36%), Positives = 251/454 (55%), Gaps = 23/454 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + IIR+SG V + P R A F DG ++D+G+ Sbjct: 4 DTIVAQATAPGRGGVGIIRVSGDKASDVAMAVLGHL-PKVRYADYCDFKAADGAVIDQGI 62 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + F P SFTGED E HGG V++ +++ + + +R+A PGEFS +AF N K+DL Sbjct: 63 ALYFKGPNSFTGEDVLELQGHGGQVVLDMLIKRVMDVDGVRIAKPGEFSEQAFMNDKLDL 122 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E + ++ + GE S+ + +D++T++R ++EA +DF +EE V Sbjct: 123 TQAEAIADLIDATSEQAAKSALNSLQGEFSTQVHELVDQVTNLRLYVEAAIDFPDEE-VD 181 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S ++ + + + S S K G IIR G K+VI G NAGKSSL NALA K+ A Sbjct: 182 FLSDGKIAASLGKIITKLDSVQSSAKQGAIIREGMKVVIAGRPNAGKSSLLNALAGKESA 241 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVT+I GTTRDVL + L+G + I DTAG+R+T D VE+ GI+R + E+E AD +L + Sbjct: 242 IVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTTDTVEQIGIERAWAEIETADQVLFM 301 Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYS---TYTEEYDHLI---SSFTG 348 + + + PKN+ + K+DL T+E H + S+ TG Sbjct: 302 VDGTTTDAVDPHDIWPDFIDRLPKNLGVTVVRNKADLTGESLDATDEQGHKVFRLSAKTG 361 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIA 406 G++EL +KS++ + L + +RHL L +L + L G +++A Sbjct: 362 SGVDELKAHLKSLMGYQ-SNLEGGFLARRRHLEALELASSHLALGQEQLEVYQAG-ELLA 419 Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E LR+ ++L +ITG + LL IFS FCIGK Sbjct: 420 EELRMCQLALSEITGKFTSDDLLGKIFSSFCIGK 453 >gi|254788525|ref|YP_003075954.1| tRNA modification GTPase TrmE [Teredinibacter turnerae T7901] gi|237685930|gb|ACR13194.1| tRNA modification GTPase TrmE [Teredinibacter turnerae T7901] Length = 449 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 172/462 (37%), Positives = 256/462 (55%), Gaps = 41/462 (8%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A++T + I+R+SGP C Q+ I P PR+A FF + +LD+G+ Sbjct: 2 DTIAAIATAPGRGGVGIVRVSGPGCQQIAHRILGLLPP-PREAKYTPFFDRNKNLLDQGI 60 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + F +P SFTGED EF HGG +++ +L E+ RLA PGEFS RAF N K+DL Sbjct: 61 ALYFSAPNSFTGEDVLEFQGHGGPVILDMLLAEILAA-GARLARPGEFSERAFLNDKLDL 119 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + ++ + ++ + G S +++L H+R ++E+ +DF EEE + Sbjct: 120 AQAEAIADLIDASSQQAAKQAINSLQGAFSEQINHLVEELIHLRMYVESAIDFPEEE-ID 178 Query: 186 NFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 S +V L+++L +DI QG L +R G K+VI G NAGKSSL NALA++ Sbjct: 179 FLSDGKVAAQLDNVLERASDILHTAQQGVL---MREGMKVVIAGRPNAGKSSLLNALAQR 235 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 D+AIVTDI GTTRDVL + ++G + I DTAG+R D VE+ GI+R + E++ AD I Sbjct: 236 DIAIVTDIEGTTRDVLREQIHIDGMPLHIVDTAGLRAATDKVEQIGIERAWQEIDQADRI 295 Query: 303 LLLKEINSKKEIS---------------------FPKNIDFIFIGTKSDLYSTYTEEYDH 341 LL+ + ++S + K D F T D + Y E Sbjct: 296 LLMVDSTRLPDLSREDYWQQLSKHQPTLEKVTVIYNKIDDSGF--TLPDTPAVYKEIA-- 351 Query: 342 LISSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEK 398 +S+ TG G++ LI +KS++ + + FS + +RHL + + YL L Sbjct: 352 -LSAKTGAGIDALIAHLKSVMGYQQTGEGGFS--ARRRHLDAIQHALTYLNNGRNQLQLH 408 Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G +++AE+LRLA L +ITG + LL IFS FCIGK Sbjct: 409 AAG-ELLAEDLRLAQDHLSEITGKFTSDDLLGKIFSSFCIGK 449 >gi|290477349|ref|YP_003470270.1| GTPase involved in tRNA modification and in thiophene and furan oxidation [Xenorhabdus bovienii SS-2004] gi|289176703|emb|CBJ83512.1| GTPase involved in tRNA modification and in thiophene and furan oxidation [Xenorhabdus bovienii SS-2004] Length = 454 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 165/455 (36%), Positives = 253/455 (55%), Gaps = 25/455 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + I+R+SGP +V E + K P PR A F +DG +LD+G+ Sbjct: 5 DTIVAQATPPGRGGVGILRISGPKAAEVAEVVLGKL-PKPRYADYLPFRDVDGTVLDQGI 63 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + FP P SFTGED E HGG +++ +L+ + + +R+ANPGEFS RAF N K+DL Sbjct: 64 ALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTISAVRIANPGEFSERAFLNDKLDL 123 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E R +M + G S Q ++ LT++R ++EA +DF +EE + Sbjct: 124 AQAEAIADLIDASSEQAARSAMNSLQGTFSHQVHQMVEALTNLRIYVEAAIDFPDEE-ID 182 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S ++ + + ++ SQ + G ++R G K+VI G NAGKSSL NALA ++ A Sbjct: 183 FLSDGKIEARLDEVIEELDHVRSQARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAA 242 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+E AD +L + Sbjct: 243 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFM 302 Query: 306 KEINSKKEI-----------SFPKNIDFIFIGTKSDLYSTYT-----EEYDHL-ISSFTG 348 + + + P ++ I K+D+ T Y + +S+ G Sbjct: 303 VDSTTTDAVEPAKIWPEFMAKLPASLPVTVIRNKTDMTGEETGVLEVSGYSLIRLSAREG 362 Query: 349 EGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDII 405 +G++ L + +K + N + F + +RHL L+ +L+ L G +++ Sbjct: 363 KGIDLLRDHLKEAMGFNSNTEGGFL--ARRRHLQALNTAAEHLQEGHQQLVFARSG-ELL 419 Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 AE LRLA L +ITG + LL IFS FCIGK Sbjct: 420 AEELRLAQQVLCEITGEFTSDDLLGRIFSSFCIGK 454 >gi|89067424|ref|ZP_01154937.1| tRNA modification GTPase [Oceanicola granulosus HTCC2516] gi|89046993|gb|EAR53047.1| tRNA modification GTPase [Oceanicola granulosus HTCC2516] Length = 422 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 158/444 (35%), Positives = 248/444 (55%), Gaps = 32/444 (7%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFF-GLDGRILDK 63 +TIFA+++ + ++++RLSGP E + P P +LR G D LD+ Sbjct: 2 DTIFALASARGRAGVAVVRLSGPQARAAVERLAG---PLPEDGRTLRKLRDGADE--LDE 56 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 L++VFP SFTGE+ E H+HG +AV++ +L+ L + LR+A GEF+ RAF NG++ Sbjct: 57 ALVLVFPEGRSFTGEEVVELHLHGSLAVISAVLQRLGQDRRLRMAAAGEFTNRAFVNGRL 116 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL + E LADLI +ETE+QR+ ++ + G L W +L + +EA +DF+ +ED Sbjct: 117 DLAQVEGLADLIDAETEVQRKQAVRALDGALGRKAELWRAQLIRAVALVEATIDFA-DED 175 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 V S EV + ++ D++S + E +R G+++ ILG N GKS+L NALA ++ Sbjct: 176 VPEDVSAEVAELVEGVRTDLASEARGVGIAERVRAGFEVAILGAPNVGKSTLLNALAGRE 235 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303 AI +++ GTTRDV+ + ++L G V + DTAG+RE D VE+ G++R E ADL + Sbjct: 236 AAITSEVAGTTRDVIEVRMELAGLPVTVLDTAGLREATDQVERIGVERALARAEQADLRV 295 Query: 304 LLKEINSKKEISFPKNI--DFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSI 361 L + P N+ D I + K+DL +S TG G+++L+ ++ Sbjct: 296 HLVDGGQS-----PANVRADDIVVQAKADLRGEG-------VSGLTGAGVDKLVAELGQR 343 Query: 362 LSNKFKKLPFSIP-----SHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSL 416 LS + ++ + +R L+ VR + + L E D++AE LR A ++ Sbjct: 344 LSARVPDGAVAVRERHRLAMERAAEGLASVVRQITL--LEEMP---DLLAEELRGAIRAI 398 Query: 417 GKITGCVDVEQLLDIIFSKFCIGK 440 + G VDVEQ+L IFS FCIGK Sbjct: 399 DSLVGRVDVEQVLGEIFSSFCIGK 422 >gi|119947214|ref|YP_944894.1| tRNA modification GTPase TrmE [Psychromonas ingrahamii 37] gi|166234813|sp|A1T0N0|MNME_PSYIN RecName: Full=tRNA modification GTPase mnmE gi|119865818|gb|ABM05295.1| tRNA modification GTPase trmE [Psychromonas ingrahamii 37] Length = 455 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 167/454 (36%), Positives = 250/454 (55%), Gaps = 23/454 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + IIR+SGP V + I K P R A F +LD+G+ Sbjct: 6 DTIVAQATAPGRGGVGIIRISGPDVEAVAKVILGKV-PKLRFAEYLSFSDQHNEVLDQGI 64 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + F +P SFTGED E HGG V++ +++ + + NLR ANPGEFS RAF N K+DL Sbjct: 65 ALFFKAPNSFTGEDVLELQGHGGPVVMDMLIKAILSIKNLRGANPGEFSERAFMNDKLDL 124 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE +ADLI + +E + ++ + GE S Q ++ L ++R ++EA +DF EEE V Sbjct: 125 AQAEGIADLIEATSEQAAKSALHSLQGEFSEKIEQLVESLIYLRIYVEASIDFPEEE-VD 183 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S ++ + + +++ + Q K G I+R+G K+VI G NAGKSSL N+L + A Sbjct: 184 FLSDGKISKGLYQIIDNLEAVKKQAKQGAILRDGMKVVIAGRPNAGKSSLLNSLVGVERA 243 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTDI GTTRDV+ + ++G + I DTAG+RE D +EK GI+R + E+ AD IL + Sbjct: 244 IVTDIAGTTRDVMREHIHIDGMPLHIIDTAGLREGADEIEKIGIERAWQEITTADRILFM 303 Query: 306 KEINSK-----KEI------SFPKNIDFIFIGTKSDLYS---TYTEEYDH---LISSFTG 348 + + ++I PK++ + K+DL + TE +DH IS+ TG Sbjct: 304 LDATTTSAEDPRQIWPDFIDKLPKSVGLTVVRNKADLTGEAFSMTENHDHPVYRISAKTG 363 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL--EMASLNEKDCGLDIIA 406 +G++ L +K I+ + + +RHL + R+L L E G +++A Sbjct: 364 QGVDLLKEHLKDIMGYQGHTTS-GFMARRRHLEAIDNAQRHLLEGKVQLEEYKAG-ELLA 421 Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E LRL L +ITG + LL IFS FCIGK Sbjct: 422 EELRLTQQYLSEITGAFSSDDLLGKIFSSFCIGK 455 >gi|325267233|ref|ZP_08133896.1| tRNA modification GTPase TrmE [Kingella denitrificans ATCC 33394] gi|324981294|gb|EGC16943.1| tRNA modification GTPase TrmE [Kingella denitrificans ATCC 33394] Length = 458 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 160/454 (35%), Positives = 253/454 (55%), Gaps = 24/454 (5%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66 TI A++T + ++R+SG + + I K P PR A F G +D GLL Sbjct: 9 TIAAIATANGRGGVGVVRISGKNLLPFAQQITGGKTPEPRTALYTDFLDAQGNAIDNGLL 68 Query: 67 IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126 + F +P SFTGED E HGG V+ +L+ ++ R+A GEF++RAF N K+DL Sbjct: 69 LYFTAPASFTGEDVLELQGHGGQIVLQMLLQRCLEL-GARIAEAGEFTKRAFLNNKLDLA 127 Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186 +AES+ADLI + ++ R+++ + G S+ +D L +R +EA LDF EE D+ Sbjct: 128 QAESVADLIDASSQSAARMAVRSLKGAFSAQIHTLVDDLITLRMLVEATLDFPEE-DIDF 186 Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246 + + + L+ ++ ++ + G I+R+G +V++G N GKSSL NALA DVAI Sbjct: 187 LEAADAKGKLRALQTQLADILANARQGAILRDGMSVVLVGAPNVGKSSLLNALAGDDVAI 246 Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306 VTDI GTTRD + + L+G + I+DTAG+R+TDD+VEK GI+R+ V+NAD+ L+L Sbjct: 247 VTDIAGTTRDTVREQITLDGVPIHITDTAGLRQTDDVVEKIGIERSEKAVQNADVALILV 306 Query: 307 E----IN-SKKEI--SFPKNIDFIFIGTKSDLYSTYTEEYDHL-------------ISSF 346 + IN + ++I P ++ I + K DL + D +S+ Sbjct: 307 DPSEGINKTTRDIMCRLPAHLKRIEVHNKIDLRNVQAARSDDAAAQSLSGADTVISLSAK 366 Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIA 406 TG GL+ L + + + + + + RH++ L LE A+L + + ++++A Sbjct: 367 TGAGLDLLKAALLQQIGWQGESEGLFL-ARTRHIHALQTAQAELENAALCDNNH-IELLA 424 Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E+LRLA + +ITG + LL +IFS+FCIGK Sbjct: 425 EHLRLAQAACNQITGEFTSDDLLGVIFSRFCIGK 458 >gi|284007058|emb|CBA72333.1| probable tRNA modification GTPase [Arsenophonus nasoniae] Length = 470 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 169/467 (36%), Positives = 258/467 (55%), Gaps = 41/467 (8%) Query: 2 NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRIL 61 + +TI A +T + I+R+SGP ++ + K P PR A F+ +G++L Sbjct: 17 TYTNDTIIAQATPPGRGGVGILRISGPKVIEIARIVLGKL-PQPRYADYLPFYDSNGKVL 75 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121 D+G+ + FP+P SFTGED E HGG +++ +L+ + + +R+ANPGEFS RAF N Sbjct: 76 DQGIALYFPAPNSFTGEDVLELQGHGGPVIIDLLLKRILVIDEIRIANPGEFSERAFLND 135 Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181 K+DL +AE++ADLI + TE R ++ + G S + ++ LT++R ++EA +DF +E Sbjct: 136 KMDLAQAEAIADLIDASTEQAARSAVNSLQGVFSQQIYEMVEALTNLRIYVEAAIDFPDE 195 Query: 182 EDVQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E + S ++ LN+++ + + S QG L +R G K+VI G NAGKSSL NA Sbjct: 196 E-IDFLSDGKIETKLNEVIAHLDSVRSQAYQGSL---LREGMKVVIAGRPNAGKSSLLNA 251 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L+ ++ AIVTDI GTTRDVL + ++G + I DTAG+RE D VEK G++R + E+E Sbjct: 252 LSGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREATDEVEKIGVERAWQEIEQ 311 Query: 299 ADLILLL-----------KEINSKKEISFPKNIDFIFIGTKSDLYS-----TYTEEYDHL 342 AD IL + K+I + PK++ I K D+ T Y + Sbjct: 312 ADHILFMVDSTTTQATEPKQIWPEFMARLPKSLPITVIRNKVDITDEPIAITKVGNYSLI 371 Query: 343 -ISSFTGEGLEELINKIK-SILSNKFKKLPFSIPSHKRHLY-------HLSQTVRYLEMA 393 +S++ EG++ L +K SI N + F + +RH+ HL Q + L +A Sbjct: 372 RLSAYRKEGIDLLRQHLKESIGFNHHIEGGFL--ARRRHIQALNIAAEHLQQGYQQLVVA 429 Query: 394 SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E ++AE LRL +L +ITG + LL IFS FCIGK Sbjct: 430 HSGE------LLAEELRLTQQALSEITGEFSSDDLLGSIFSSFCIGK 470 >gi|257095986|ref|YP_003169627.1| tRNA modification GTPase TrmE [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257048510|gb|ACV37698.1| tRNA modification GTPase TrmE [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 458 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 156/436 (35%), Positives = 255/436 (58%), Gaps = 20/436 (4%) Query: 18 SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77 I +IR++G S + E + ++ P R+A+L F D ++D GLL+ FP+P SFTG Sbjct: 30 GGIGVIRVAGASLLEFAEALSGRR-PLARRATLCEFRAADHVVIDTGLLLYFPAPHSFTG 88 Query: 78 EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137 +D E H HGG V+ +L ++ RLA+PGEF+RRA+ NGK+DL +AE++ DLI + Sbjct: 89 DDVLELHGHGGPVVMQMLLVRCLEL-GARLADPGEFTRRAYLNGKLDLAQAEAVIDLIDA 147 Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197 T R ++ + GE S +D+L +R+ +EA LDF +E DV + + + Sbjct: 148 ATAAAARSAVRSLQGEFSGEVRVLLDQLIELRALVEATLDFPDE-DVDFLEAADAFGRLD 206 Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257 L+ ++ + + G +++ G +V++G N GKSSL N LA +VAIVT +PGTTRD+ Sbjct: 207 RLEQRLTRVFERARQGRLLQGGLHVVLVGKPNVGKSSLLNRLAGDEVAIVTPLPGTTRDL 266 Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI-----NSKK 312 + L +EG + + DTAG+R+T+D +E+ GI+RT+ E+E AD+++LL + ++++ Sbjct: 267 VRSTLQVEGIPLHVIDTAGLRDTEDQIERLGIERTWREIERADVVVLLVDARTGVGDAER 326 Query: 313 EI--SFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFTGEGLEELINKIKSILSN 364 I FP + +F+ K DL S E + ++S+ +GEG E L ++ I Sbjct: 327 VILAKFPAKLARVFVYNKIDLTSRAAERREEADGVAIMLSARSGEGSELLRQELLRIAGW 386 Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVD 424 + F + +RHL+ L++T + ++ A + L++ AE LRLA ++L +ITG Sbjct: 387 HPAEDVFI--ARERHLHALAETRQNIDAA--RRQLPSLELFAEELRLAQLALSRITGEYS 442 Query: 425 VEQLLDIIFSKFCIGK 440 + LL IF +FCIGK Sbjct: 443 ADDLLGEIFGRFCIGK 458 >gi|254467101|ref|ZP_05080512.1| tRNA modification GTPase TrmE [Rhodobacterales bacterium Y4I] gi|206688009|gb|EDZ48491.1| tRNA modification GTPase TrmE [Rhodobacterales bacterium Y4I] Length = 428 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 157/437 (35%), Positives = 243/437 (55%), Gaps = 12/437 (2%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TIFA+++ + +++IR+SGP +C P R SLR G LD+ L Sbjct: 2 DTIFALASAQGKAGVAVIRVSGPLALTAGAQLCGGHLP-ARGTSLRILQDESGERLDEAL 60 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 ++ F +P SFTGE++ EF HG AV++ +L+ L ++ LR+A PGEF+RRA ENG +DL Sbjct: 61 VLSFTAPHSFTGENTVEFQTHGSTAVISAVLDSLRRIDGLRIAEPGEFTRRALENGHLDL 120 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 + E LADLI +ETE QR+ + ++G L L W KL S IE +DF+ +EDV Sbjct: 121 AQVEGLADLIDAETEAQRKQAQVILAGGLGRLAEDWRGKLIRAASLIEVTIDFA-DEDVP 179 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 + EV + ++ + ++ E IR+G+++ I+G N GKS+L NALA ++ A Sbjct: 180 VDVTPEVSALLADVQAGLEKETVGVRIAERIRSGFEVAIVGAPNVGKSTLLNALAGREAA 239 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 I ++ GTTRD++ + +DL G V + DTAG+R+TDD VE GI ++ADL + L Sbjct: 240 ITSEYAGTTRDIIEVRMDLAGLPVTLLDTAGLRDTDDHVEGIGIALARKRAQDADLRVFL 299 Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365 E + ++ + I + K+DL ++ IS +G+G++ L++ I +L N+ Sbjct: 300 AERDEVLDVEMQQG--DIRLLPKADLR----DDAGDAISGQSGQGIDRLVDHISKVLQNR 353 Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LNEKDCGLDIIAENLRLASVSLGKITGCV 423 + I + RH + + L A L DI AE +R A +L + G + Sbjct: 354 SAQ--AGIATRARHRDAMVSALASLAGAQEILKRGPEFYDIAAEEMRSAIRALEMLVGRI 411 Query: 424 DVEQLLDIIFSKFCIGK 440 VE LLD IFS FC+GK Sbjct: 412 GVENLLDEIFSSFCLGK 428 >gi|156936085|ref|YP_001440001.1| tRNA modification GTPase TrmE [Cronobacter sakazakii ATCC BAA-894] gi|166200478|sp|A7MN03|MNME_ENTS8 RecName: Full=tRNA modification GTPase mnmE gi|156534339|gb|ABU79165.1| hypothetical protein ESA_03979 [Cronobacter sakazakii ATCC BAA-894] Length = 454 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 169/463 (36%), Positives = 257/463 (55%), Gaps = 32/463 (6%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+H +TI A +T + I+R+SG V + + K P R A F DG Sbjct: 1 MSH-NDTIVAQATPPGRGGVGILRVSGQQARNVAQAVLGKL-PKARYADYLPFKDADGTA 58 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG +++ +L+ + +P +R+A PGEFS RAF N Sbjct: 59 LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + +E R ++ + G S+ ++ LTH+R F+EA +DF + Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPD 178 Query: 181 EEDVQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 EE + S ++ LN+++ D+ + ++ + G ++R G K+VI G NAGKSSL N Sbjct: 179 EE-IDFLSDGKIEAQLNEVI---GDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLN 234 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 ALA ++ AIVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+E Sbjct: 235 ALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIE 294 Query: 298 NADLILLLKEINSKKEISFPKNI--DFI----------FIGTKSDLYSTY---TEEYDH- 341 AD +L + + + + + P I DFI + K+D+ +E H Sbjct: 295 QADRVLFMVD-GTTTDATDPAQIWPDFIARLPAKLPITVVRNKADVTGEQPGISEVNGHS 353 Query: 342 --LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNE 397 +S+ T EG++ L N +K + + + +RHL L +L+ A L Sbjct: 354 LIRLSARTNEGVDVLRNHLKQSMGFD-TSMEGGFLARRRHLQALEDAANHLQQGKAQLLG 412 Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G +++AE LRLA +L +ITG + LL IFS FCIGK Sbjct: 413 AWAG-ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454 >gi|219114453|ref|XP_002176397.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217402643|gb|EEC42633.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 609 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 173/498 (34%), Positives = 261/498 (52%), Gaps = 64/498 (12%) Query: 5 KETIFAVSTGAL---PSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLDGR- 59 ++TIFA+S+GA +A+++IRLSGP + + + + P PR A+LR LD Sbjct: 114 QDTIFALSSGAATGQATAVAVIRLSGPQAGVILQRLTPGRPLPKPRTAALRKLHDLDDPK 173 Query: 60 -ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 +LD+ L++ F P SFTG+D E VHG AVV +LE L RLA PGEF++RA+ Sbjct: 174 VVLDQALVLYFSGPNSFTGDDVVELQVHGSRAVVTAVLETLGTAA--RLAEPGEFTQRAW 231 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 GK+D L+ E+LADL++++T QR+ ++ + G+LS++Y W D L + EA +DF Sbjct: 232 LAGKLDALQVEALADLLTADTATQRQQALAQLDGQLSAVYDTWRDMLVAGLAHAEAVIDF 291 Query: 179 SEEEDV---------QNFSSKEVLNDIL----FLKNDISSHISQGKLGEIIRNGYKIVIL 225 ++E + Q + V ++ L+ + + + GE++R G +I I+ Sbjct: 292 GDDERLDDALLDEEDQQLAQDNVWGGVVGNMEVLERSMRRQLQDARRGELVRQGLQIAIV 351 Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIV 284 G NAGKSSLFN LA +D AIV+ GTTRDVL + L+L G + DTAG+R TDD + Sbjct: 352 GPPNAGKSSLFNILADRDAAIVSPTAGTTRDVLELSLNLGGVKCVLQDTAGVRTFTDDAI 411 Query: 285 EKEGIKRTFLEVENADLILLL---KEINSKKEI-----SFPKNID---FIFIGTKSDLYS 333 E EGI R ADL+L + ++ S EI N+D + + KSDL Sbjct: 412 EMEGIARATRAAAQADLVLAMVDSSDVESGLEILTTILQNSPNLDRQHVLLLLNKSDLRE 471 Query: 334 TYTEEYD-------------HLISSFTGEGLEELINKIKSILSNKFKKLPFS-------- 372 + + + IS T G++ + + I + S Sbjct: 472 EKHQTIEVPGKDVVELIGGQYEISCATQNGVDTFLESLTRICVARVSNTDASDRDKTSIV 531 Query: 373 --------IPSHKRHLYHLSQTVRYLE-MASLNEKDC-GLDIIAENLRLASVSLGKITGC 422 + + RH H+ V LE +L+++ +D+ AE LRLA+ LG+ITG Sbjct: 532 DRETSEGTLITRARHRQHVQAAVEALERFQTLSQQGTMSVDLAAEELRLAASELGRITGA 591 Query: 423 VDVEQLLDIIFSKFCIGK 440 VDVE +LD +F+ FCIGK Sbjct: 592 VDVEDVLDKLFADFCIGK 609 >gi|149911784|ref|ZP_01900388.1| tRNA modification GTPase [Moritella sp. PE36] gi|149805130|gb|EDM65152.1| tRNA modification GTPase [Moritella sp. PE36] Length = 454 Score = 260 bits (664), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 167/454 (36%), Positives = 249/454 (54%), Gaps = 23/454 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 ETI A +T + IIR+SG V + I K P RKA F D + +D+G+ Sbjct: 5 ETIIAQATPPGRGGVGIIRISGAKTELVAQTILNKI-PAVRKADYLSFLDEDQQTIDQGI 63 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 I+F +P SFTGED E HGG +++ ++ + K+ +R+A PGEFS RAF N K+DL Sbjct: 64 AILFKAPNSFTGEDVLELQGHGGPVIMDMLMRRILKIDGIRMARPGEFSERAFLNDKMDL 123 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E + +M + GE S + L H+R ++EA +DF EEE V Sbjct: 124 TQAEAIADLIDATSERAAKSAMNSLQGEFSKKINTLTESLIHLRIYVEAAIDFPEEE-VD 182 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 + ++ + + +++S+ + K G IIR G K+VI G NAGKSSL NALA K+ A Sbjct: 183 FLADGKIAQALYNIMDNLSAVQKEAKQGAIIREGMKVVIAGRPNAGKSSLLNALAGKESA 242 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTDI GTTRDVL + ++G + I DTAG+R++ D VE+ GI+R + E+ NAD +L + Sbjct: 243 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDSPDRVEQIGIERAWQEINNADQVLFM 302 Query: 306 -----KEINSKKEI------SFPKNIDFIFIGTKSDLYS---TYTEEYDHLISSFTGE-- 349 + EI P +I I K DL T +++ H + + + Sbjct: 303 VDGTTTDATDPAEIWPDFIDRLPSSIGLTVIRNKVDLTGETLTVSDDQSHPVFKISAKEN 362 Query: 350 -GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIA 406 GL+EL + +K + K + +RHL L + +L++ L G +++A Sbjct: 363 LGLDELKDHLKQCMGYK-SNTEGGFIARRRHLDALEKADEHLQIGKQQLEVYKAG-ELLA 420 Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E LRLA L +ITG + LL IF+ FCIGK Sbjct: 421 EELRLAQQQLSEITGEFSSDDLLGRIFTSFCIGK 454 >gi|167855706|ref|ZP_02478462.1| tRNA modification GTPase TrmE [Haemophilus parasuis 29755] gi|167853162|gb|EDS24420.1| tRNA modification GTPase TrmE [Haemophilus parasuis 29755] Length = 452 Score = 260 bits (664), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 172/462 (37%), Positives = 255/462 (55%), Gaps = 37/462 (8%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64 KETI A +T I I+R+SGP +V + + K P PR A F DG +LD+G Sbjct: 2 KETIVAQATPIGRGGIGILRVSGPLATEVAQAVLGKC-PKPRIADYLPFKDEDGTVLDQG 60 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 + + F +P SFTGED E HGG +++ +L + K+ +R+A GEFS +AF N K+D Sbjct: 61 IALFFKAPHSFTGEDVLELQGHGGQVILDLLLNRILKVKGVRIARAGEFSEQAFLNDKLD 120 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ADLI + +E R +++ + GE S+ + +D + ++R+++EA +DF +EE + Sbjct: 121 LAQAEAIADLIDATSEQAARSALKSLQGEFSNKINELVDSVIYLRTYVEAAIDFPDEE-I 179 Query: 185 QNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 + ++ LN+I+ ++ QG I+R G K+VI G NAGKSSL NALA Sbjct: 180 DFLADGKIEAKLNEIIAQLANVRQEAKQGT---ILREGMKVVIAGKPNAGKSSLLNALAG 236 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 ++ AIVTDI GTTRDVL + ++G + I DTAG+RE D VEK GIKR + E+E AD Sbjct: 237 REAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVEKIGIKRAWDEIEQADH 296 Query: 302 ILLLKEINSKKEISF-----------PKNIDFIFIGTKSDLYSTYTEEYDHLI------- 343 +LL+ + N + SF PKNI I K DL T E + L+ Sbjct: 297 VLLMIDSNESQADSFQQEWATFLAKLPKNIPVTVIRNKVDL----TGEAESLVQADNFTV 352 Query: 344 ---SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEK 398 S+ T G++ L +K + + + +RHL L +LE L + Sbjct: 353 IRLSAQTKVGVDLLREHLKKSMGYQ-SSTEGGFIARRRHLVALETAAEHLERGHIQLTQF 411 Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G +++AE LR+ +L +ITG + LL IFS FCIGK Sbjct: 412 YAG-ELLAEELRMVQNALSEITGQFTSDDLLGNIFSSFCIGK 452 >gi|239818256|ref|YP_002947166.1| tRNA modification GTPase TrmE [Variovorax paradoxus S110] gi|239804833|gb|ACS21900.1| tRNA modification GTPase TrmE [Variovorax paradoxus S110] Length = 471 Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 163/470 (34%), Positives = 251/470 (53%), Gaps = 40/470 (8%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF-PRKASLRYFFGLDGRILDKG 64 + I A++T + A+ I+R+SG + + +C + P PR+A+ F G +D G Sbjct: 7 DPIVAIATASGRGAVGIVRVSGARLAPLVDALCGR--PLKPREATYLPFRDAAGEPVDHG 64 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEEL-------------AKMPNLRLANPG 111 L I FPSP SFTGED E HGG V+ +L ++P LR+A PG Sbjct: 65 LAIHFPSPHSFTGEDVLELQAHGGTVVLQLLLARCLEAAAEADPVTGRPRLPGLRVAEPG 124 Query: 112 EFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSF 171 EFS+RAF NGKIDL +AE++ADLI + TE R + +SG S D L H+R Sbjct: 125 EFSQRAFLNGKIDLAQAEAIADLIDASTEAAARSAGRSLSGAFSREIHALRDALIHLRML 184 Query: 172 IEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAG 231 +EA LDF EEE + + + L+ +++ + K G ++R G K+VI G NAG Sbjct: 185 VEATLDFPEEE-IDFLQKADATGQLAKLQAQLAAVQQRAKQGALLREGIKVVIAGQPNAG 243 Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR 291 KSSL NALA ++AIV+ + GTTRDV++ + + G + + DTAG+RE+ D VE+ G+ R Sbjct: 244 KSSLLNALAGAELAIVSAVAGTTRDVVSETIQIHGVPLHVVDTAGLRESSDEVEQIGVAR 303 Query: 292 TFLEVENADLILLLKEINSKKEISF---------------PKNIDFIFIGTKSD---LYS 333 + ++E AD +L L ++ + + P ++ + + K D + Sbjct: 304 AWGQIEGADAVLFLHDLTRTGQPEYAAADAEILRVLQHKLPASVPVLDVWNKQDAAPMPE 363 Query: 334 TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP-SHKRHLYHLSQ--TVRYL 390 T +S+ TG G+E L ++ ++ ++ +P + + RH+ L Q T L Sbjct: 364 TAGAAQGIALSAKTGLGIEALREQLLAMAG--WQAVPEGVYLARARHVQALGQVETHLAL 421 Query: 391 EMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + L + LD++AE LRLA +L +ITG + LL +IFS+FCIGK Sbjct: 422 AASHLAAQAQLLDLLAEELRLAQNALNEITGEFGADDLLGVIFSRFCIGK 471 >gi|326319555|ref|YP_004237227.1| tRNA modification GTPase TrmE [Acidovorax avenae subsp. avenae ATCC 19860] gi|323376391|gb|ADX48660.1| tRNA modification GTPase TrmE [Acidovorax avenae subsp. avenae ATCC 19860] Length = 476 Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 166/479 (34%), Positives = 247/479 (51%), Gaps = 43/479 (8%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 + + I A++T A+ I+R+SG + E +C + PR+A+ F G+ Sbjct: 2 LPRHTDPIAAIATAPGRGAVGIVRVSGRGVGPLVEALCGRTL-RPREATYLPFRDAAGQS 60 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEEL-------------AKMPNLRL 107 +D+GL + FP+P S+TGED E HGG V+ +L ++P LRL Sbjct: 61 IDQGLALYFPAPHSYTGEDVLELQAHGGPVVLQLLLARCLQAASEPDRATGRPRLPGLRL 120 Query: 108 ANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTH 167 A PGEF+ RAF N KIDL +AE++ADLI + TE R + ++G S + D L H Sbjct: 121 ARPGEFTERAFLNDKIDLAQAEAIADLIDASTEAAARSASRSLAGAFSDEIHRLRDALVH 180 Query: 168 IRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227 +R +EA LDF EEE + + + L+ ++ + + + G ++R G K+VI G Sbjct: 181 LRMLVEATLDFPEEE-IDFLRKADAHGQLAALQRTLAEVMGRTRQGALLREGIKVVIAGQ 239 Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKE 287 NAGKSSL NALA ++AIVT I GTTRD + + +EG + + DTAG+RE+DD VE+ Sbjct: 240 PNAGKSSLLNALAGAELAIVTPIAGTTRDKVQQTIQIEGVPLHVIDTAGLRESDDEVERI 299 Query: 288 GIKRTFLEVENADLILLLKEINSKKEISF---------------PKNIDFIFIGTKSDLY 332 GI+R + E+ AD +L L ++ + + P + + + KSD Sbjct: 300 GIERAWQEIAAADAVLFLHDLTRAGQPDYEAADAEIAARLAGMAPAQVPVVDVWNKSDRA 359 Query: 333 STYTEEYDHL--------ISSFTGEGLEELINKIKSILSNKFKKLPFSI-PSHKRHLYHL 383 + +S+ TGEGL+ L + I ++ P I + RHL L Sbjct: 360 EGSSGAAPDAPGRAAAVRLSARTGEGLDGLRRVLLDIAG--WQSAPEGIYTARARHLEAL 417 Query: 384 SQTVRYL-EMASLNEKD-CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +L E A+ E D LD++AE LRLA +L ITG + LL +IFS FCIGK Sbjct: 418 QAVDAHLMEAAAQLESDGPALDLLAEELRLAQQALNAITGEFTSDDLLGVIFSSFCIGK 476 >gi|226947216|ref|YP_002802289.1| tRNA modification GTPase TrmE [Azotobacter vinelandii DJ] gi|226722143|gb|ACO81314.1| tRNA modification GTPase TrmE [Azotobacter vinelandii DJ] Length = 455 Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 165/460 (35%), Positives = 256/460 (55%), Gaps = 25/460 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF-PRKASLRYFFGLDGR 59 M+ +ETI A++T + I+R+SGP + IC + P PR A F G+ Sbjct: 1 MHSARETIAAIATAQGRGGVGIVRVSGPLAGTIATGICAR--PLRPRHAHYGAFRDGTGQ 58 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 +LD+G+ + FP P SFTGED E HGG V++ +L ++ R+A PGEFS +AF Sbjct: 59 VLDEGIALFFPGPHSFTGEDVLELQGHGGPLVLDLLLRRCLEL-GARMARPGEFSEQAFL 117 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 N K+DL +AE++ADLI + + R ++ + GE S ++L +R ++EA +DF Sbjct: 118 NDKLDLAQAEAIADLIEASSAQAARNALRSLQGEFSRRVNALGERLIELRLYVEAAIDFP 177 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 EEE + + VL + L+ D+S+ + + G ++R+G +VI G NAGKSSL NAL Sbjct: 178 EEE-IDFLADGRVLELLDGLRADLSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNAL 236 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 A ++ AIVTDI GTTRD+L + ++G + I DTAG+R+T+D VE+ G++R + A Sbjct: 237 AGRESAIVTDIAGTTRDLLREHIHIDGMPLHIVDTAGLRDTEDRVERIGVERALQAIREA 296 Query: 300 DLILLLKEINSKKEIS----FPKNIDF-------IFIGTKSDLYS---TYTEEYD-HLI- 343 D +LL+ + ++ + +P+ +D I K DL + + D H++ Sbjct: 297 DRVLLVIDASAPEAADPFALWPEFLDLPPEPGKVTLIRNKIDLTGEPIVHEQGSDGHVVI 356 Query: 344 --SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401 S+ TGEGL+ L +K+ + + + + S + RHL L + LE CG Sbjct: 357 GLSARTGEGLDLLRKHLKACMGFE-QTIESSFSARCRHLEALRRAANSLEHGHAQLIGCG 415 Query: 402 L-DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE+LR A LG+ITG + LL IFS FCIGK Sbjct: 416 AGELLAEDLRQAQQHLGEITGAFTSDDLLGRIFSSFCIGK 455 >gi|311696589|gb|ADP99462.1| tRNA modification GTPase TrmE [marine bacterium HP15] Length = 468 Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 166/460 (36%), Positives = 252/460 (54%), Gaps = 24/460 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+ +TI A++T + + I+R+SGP + + + + P PR A F G + Sbjct: 13 MSQSSDTIAAIATAPGQAGVGIVRISGPKSLAIAKKMLGFE-PKPRYAHYGPFHDSHGEL 71 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+G+ + FP+P SFTGED E HGG +++ +L E+ RLA PGEFS RAF N Sbjct: 72 IDEGIGLFFPNPHSFTGEDVFELQGHGGTVILDLLLREVCGQ-GARLARPGEFSERAFLN 130 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI S +E R ++ M G S +D +TH+R ++EA +DF E Sbjct: 131 DKLDLAQAEAIADLIESSSEQAARCAVRSMQGVFSRQIEDLVDAVTHLRIYVEAAIDFPE 190 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + + +V +D+ L + +++ + G I+R+G K+VI G NAGKSSL NALA Sbjct: 191 EE-IDFLADGKVASDLQNLLERLGKILAEAQQGTILRDGMKVVIGGRPNAGKSSLLNALA 249 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVT I GTTRDVL + ++G + I DTAG+R++ D VE+ GI R + E+ AD Sbjct: 250 GREAAIVTAIEGTTRDVLREHIHIDGMPLHIIDTAGLRDSPDEVEQIGIARAWEEIRQAD 309 Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLY--STYTEEYDHL----- 342 ILL+ + + ++ S P N I K DL + DH Sbjct: 310 RILLMVDATTTEKTSPHEIWPDFIDQLPANAPVTVIRNKVDLSGETVGISAEDHQSAPVI 369 Query: 343 -ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401 +++ + EGLE L + +K + + +RHL L + L + G Sbjct: 370 RLAAKSAEGLEILRDHLKQCMGFA-STTEGGFLARRRHLDALERAQALLIQGQSQLEGFG 428 Query: 402 L-DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE+LR A SLG+ITG + ++LL IFS FCIGK Sbjct: 429 AGELLAEDLRAAQDSLGEITGHLTPDELLGKIFSSFCIGK 468 >gi|50123364|ref|YP_052531.1| tRNA modification GTPase TrmE [Pectobacterium atrosepticum SCRI1043] gi|81643492|sp|Q6CYQ9|MNME_ERWCT RecName: Full=tRNA modification GTPase mnmE gi|49613890|emb|CAG77342.1| probable tRNA modification GTPase [Pectobacterium atrosepticum SCRI1043] Length = 454 Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 162/454 (35%), Positives = 249/454 (54%), Gaps = 23/454 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + I+R+SG + +V + K P PR A F +G LD+G+ Sbjct: 5 DTIVAQATPPGRGGVGILRVSGQAAAEVAHAVLGKL-PKPRHADYLPFRDTNGTTLDQGI 63 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + FP P SFTGED E HGG +++ +L+ + +PN+R+A PGEFS RAF N K+DL Sbjct: 64 ALWFPGPNSFTGEDVLELQGHGGPVILDLLLQRILTLPNVRIARPGEFSERAFLNDKLDL 123 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E R ++ + G S+ Q ++ LTH+R ++EA +DF +EE + Sbjct: 124 AQAEAIADLIDASSEQAARSALNSLQGVFSTRINQLVEALTHLRIYVEAAIDFPDEE-ID 182 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S ++ + + D+ + ++ G ++R G K+VI G NAGKSSL NALA ++ A Sbjct: 183 FLSDGKIEAQLNGVMADLDAVRTEAHQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAA 242 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVT I GTTRDVL + ++G + I DTAG+R+ D VE+ GI+R + E+E AD +L + Sbjct: 243 IVTAIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFM 302 Query: 306 -----------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD---H---LISSFTG 348 ++I + PK + + K+D+ D H +S+ TG Sbjct: 303 VDGTTTQATEPEQIWPEFMARLPKTLPITVVRNKADVTGETLGIADVNTHSLIRLSARTG 362 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIA 406 EG++ L + +K + + +RHL L ++L L G +++A Sbjct: 363 EGVDTLRDHLKQSMGFT-SNTEGGFLARRRHLQALELAAQHLIQGKEQLVSAYAG-ELLA 420 Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E LRLA SL +ITG + LL IFS FCIGK Sbjct: 421 EELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 454 >gi|261823804|ref|YP_003261910.1| tRNA modification GTPase TrmE [Pectobacterium wasabiae WPP163] gi|261607817|gb|ACX90303.1| tRNA modification GTPase TrmE [Pectobacterium wasabiae WPP163] Length = 454 Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 163/454 (35%), Positives = 249/454 (54%), Gaps = 23/454 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + I+R+SG + +V I K P PR A F +G LD+G+ Sbjct: 5 DTIVAQATPPGRGGVGILRVSGRAAAEVAHAILGKL-PKPRHADYLPFRDTNGTTLDQGI 63 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + FP P SFTGED E HGG +++ +L+ + +PN+R+A PGEFS RAF N K+DL Sbjct: 64 ALWFPGPNSFTGEDVLELQGHGGPVILDLLLQRILTLPNVRIARPGEFSERAFLNDKLDL 123 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E R ++ + G S+ Q ++ LTH+R ++EA +DF +EE + Sbjct: 124 AQAEAIADLIDASSEQAARSALNSLQGVFSTRINQLVEALTHLRIYVEAAIDFPDEE-ID 182 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S ++ + + D+ + ++ G ++R G K+VI G NAGKSSL NALA ++ A Sbjct: 183 FLSDGKIEAQLNGVMADLDAVRAEAHQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAA 242 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVT I GTTRDVL + ++G + I DTAG+R+ D VE+ GI+R + E+E AD +L + Sbjct: 243 IVTAIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFM 302 Query: 306 -----------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD---H---LISSFTG 348 ++I + PK + + K+D+ D H +S+ TG Sbjct: 303 VDGTTTQATEPEQIWPEFMARLPKTLPITVVRNKADVTGETLGIEDVNTHSLIRLSARTG 362 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIA 406 EG++ L + +K + + +RHL L ++L L G +++A Sbjct: 363 EGVDTLRDHLKQSMGFT-SNTEGGFLARRRHLQALELAAQHLVQGKEQLVSAYAG-ELLA 420 Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E LRLA SL +ITG + LL IFS FCIGK Sbjct: 421 EELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 454 >gi|220936472|ref|YP_002515371.1| tRNA modification GTPase TrmE [Thioalkalivibrio sp. HL-EbGR7] gi|219997782|gb|ACL74384.1| tRNA modification GTPase TrmE [Thioalkalivibrio sp. HL-EbGR7] Length = 446 Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 162/446 (36%), Positives = 243/446 (54%), Gaps = 15/446 (3%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64 ++TI A++T + ++R+SGP+ + I + P PR A+ F G G LD G Sbjct: 6 EDTIAAIATPPGFGGVGVVRISGPNTAALARAILGRL-PAPRHATYAPFLGEQGETLDDG 64 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 + + FP P S+TGED+ E HGG V++ +L + R A PGEF+ RAF NG++D Sbjct: 65 IALFFPGPRSYTGEDTLELQGHGGPVVLDLLLSRCLAL-GCRAARPGEFTERAFLNGRLD 123 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ADLI + + R + + G LS +D LT +R +EA LDF +E DV Sbjct: 124 LAQAEAVADLIEAGSAQAARSARRALEGALSHEVNALLDALTGLRVSVEAALDFPDE-DV 182 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 +V + L I I G ++R G ++VI G NAGKSSL N L +++ Sbjct: 183 DILREAQVQARLADLSGRIDRLIRGAAQGALLREGLRLVIAGRPNAGKSSLLNRLVRREA 242 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIVT IPGTTRDVL + L+G + + DTAG+RE+DD VE+EGI+R + E+E AD +LL Sbjct: 243 AIVTHIPGTTRDVLRETVSLDGLPLHLVDTAGLRESDDPVEQEGIRRAWAEIEAADAVLL 302 Query: 305 L-------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL--ISSFTGEGLEELI 355 + E + P ++ I + K DL + + +S+ G+G++ L Sbjct: 303 VVDDALGEGEEEAAIRARLPGHLPVICVHNKIDLTGRVPGKQGGVLYLSAQDGQGVDSLR 362 Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDIIAENLRLASV 414 +K+ F + +RHL L++T ++ A G +++AE+LRLA Sbjct: 363 EHLKA--QAGFSGGEGLFLARRRHLDALTRTAGHVATARDALAVGAGPELVAEDLRLAQE 420 Query: 415 SLGKITGCVDVEQLLDIIFSKFCIGK 440 +LG+ITG + LL IFS FCIGK Sbjct: 421 TLGEITGRFSSDDLLGRIFSTFCIGK 446 >gi|114322028|ref|YP_743711.1| tRNA modification GTPase TrmE [Alkalilimnicola ehrlichii MLHE-1] gi|122310594|sp|Q0A4L6|MNME_ALHEH RecName: Full=tRNA modification GTPase mnmE gi|114228422|gb|ABI58221.1| tRNA modification GTPase trmE [Alkalilimnicola ehrlichii MLHE-1] Length = 444 Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 162/448 (36%), Positives = 254/448 (56%), Gaps = 18/448 (4%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64 + TI A++T +++IR+SGP+ + + + P PR+A L F G LD+G Sbjct: 3 RTTICALATPPGRGGVAVIRVSGPAVPAIARALAGRL-PEPRRAVLARFCDAGGDTLDEG 61 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 L++ FP+P SFTGED E HGG VV+ +L L + A PGEFS RAF NG++D Sbjct: 62 LMLYFPAPRSFTGEDVLELQGHGGEVVVDRLLRRLHAL-GAHPARPGEFSERAFLNGRMD 120 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ADLI++++E + ++ + G + + ++T +R +EA +DFS+EE + Sbjct: 121 LTQAEAIADLIAADSEASAQAALRSLEGAFGDAVRELVARVTRLRVQVEAAIDFSDEE-I 179 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + + V I L + + + + G ++R+G ++V+ G NAGKSSL NAL + D Sbjct: 180 DFLADEAVAGQIGALIDQLQALRDKAGQGRVLRDGMQVVLAGPPNAGKSSLLNALTEDDS 239 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIVT++PGTTRD+L L ++G + + DTAG+R+ D +E EGI+R + AD +LL Sbjct: 240 AIVTEVPGTTRDLLREHLHIDGMPLHVIDTAGLRDDPDRIEAEGIRRARAAMAEADRVLL 299 Query: 305 LKEINSKK----EISFPKNIDFIFIGTKSDLYSTYT------EEYDHLISSFTGEGLEEL 354 +++I ++ P +I + K DL +E +S+ TG GL L Sbjct: 300 IQDIREPPIDPAALALPGDIPLTRVYNKVDLSDEAPGPRRAGDEVAIAVSALTGVGLPAL 359 Query: 355 INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLA 412 + +KS++ FS + +RHL L++ +L +A +L E+ G +I AE LRL Sbjct: 360 RDHLKSVMGYGEAGSHFS--ARRRHLDALARAADHLALARRALVEEMAG-EIAAEELRLV 416 Query: 413 SVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +LG+ITG E LL IFS FCIGK Sbjct: 417 QHNLGEITGEFTSEDLLGEIFSSFCIGK 444 >gi|120600873|ref|YP_965447.1| tRNA modification GTPase TrmE [Shewanella sp. W3-18-1] gi|166991118|sp|A1RQE8|MNME_SHESW RecName: Full=tRNA modification GTPase mnmE gi|120560966|gb|ABM26893.1| tRNA modification GTPase trmE [Shewanella sp. W3-18-1] gi|319428592|gb|ADV56666.1| tRNA modification GTPase TrmE [Shewanella putrefaciens 200] Length = 453 Score = 259 bits (663), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 163/453 (35%), Positives = 255/453 (56%), Gaps = 21/453 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + IIR+SG V + P R A F G+++D+G+ Sbjct: 4 DTIVAQATAPGRGGVGIIRISGDKATDVAMAVLGHL-PKTRYADYCDFKNATGQVIDQGI 62 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + F P SFTGED E HGG V++ +++ + ++ +R+A PGEFS +AF N K+DL Sbjct: 63 ALFFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVLEVEGIRIAKPGEFSEQAFMNDKLDL 122 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E + +++ + GE S + +D++T++R ++EA +DF +EE V Sbjct: 123 TQAEAIADLIDATSEQAAKSALQSLQGEFSKEVHELVDQVTNLRLYVEAAIDFPDEE-VD 181 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S ++ N + + + +S+ + K G IIR G K+VI G NAGKSSL NALA K+ A Sbjct: 182 FLSDGKIANALYKIIDKLSTVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKESA 241 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVT+I GTTRDVL + L+G + I DTAG+R+T D VE+ GI+R + E+ +AD +L + Sbjct: 242 IVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTTDTVEQIGIERAWNEINSADRVLFM 301 Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYS---TYTEEYD---HLISSFTG 348 + + + P N+ I K+DL TEE + IS+ TG Sbjct: 302 VDGTTTDAVDPHDIWPDFINRLPANLGVTVIRNKADLTGENLDMTEEKGYSVYRISAKTG 361 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407 G++EL +KS++ + L + +RHL L +L++ E +++AE Sbjct: 362 LGVDELKLHLKSLMGYQ-SNLEGGFIARRRHLEALDVAASHLQLGKEQLEVYLAGELLAE 420 Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LR+A ++L +ITG + LL IFS FCIGK Sbjct: 421 ELRMAQIALSEITGRFTSDDLLGKIFSSFCIGK 453 >gi|149375642|ref|ZP_01893411.1| tRNA modification GTPase TrmE [Marinobacter algicola DG893] gi|149360044|gb|EDM48499.1| tRNA modification GTPase TrmE [Marinobacter algicola DG893] Length = 456 Score = 259 bits (663), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 165/460 (35%), Positives = 251/460 (54%), Gaps = 24/460 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M + +TI A++T S + I+R+SGP + + + P PR A F G + Sbjct: 1 MFNATDTIAAIATAPGQSGVGIVRVSGPHATAIARQMLGFE-PRPRYAHYGPFLDTQGEL 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+G+ + FP+P SFTGED E HGG +++ +L + ++ RLA PGEFS RAF N Sbjct: 60 IDEGIGLYFPNPHSFTGEDVFELQGHGGTVILDLLLRTVCEL-GARLARPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI S +E R ++ + G S ++ +TH+R ++EA +DF E Sbjct: 119 DKLDLTQAEAIADLIESSSEQAARCAVRSLQGVFSRRIDALVEAVTHLRIYVEAAIDFPE 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + + +V ND+ + D+ +++ + G I+R+G K+VI G NAGKSSL NALA Sbjct: 179 EE-IDFLADGKVANDLQVIIQDLDIILAEAQQGTILRDGMKVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVT + GTTRDVL + ++G + I DTAG+R++ D VE+ GI R + E+ AD Sbjct: 238 GREAAIVTAVEGTTRDVLREHIHIDGMPLHIIDTAGLRDSPDEVEQIGIARAWDEIRQAD 297 Query: 301 LILLLKEINSKKEI-----------SFPKNIDFIFIGTKSDLYSTYT--EEYDH------ 341 ILL+ + + E P I K DL EE D Sbjct: 298 RILLMVDATTTPETEPHQLWPDFIDQLPSGAPLTVIRNKVDLTGEPAGFEELDASAAPVV 357 Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT-VRYLEMASLNEKDC 400 I++ + +GLE L + +K + I + +RHL L + V L+ + Sbjct: 358 RIAAKSADGLEVLRDHLKQCMGFASTTEGGFI-ARRRHLDALERARVSLLQGEDQLQGYG 416 Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE+LR A SLG+ITG + + LL IFS FCIGK Sbjct: 417 AGELLAEDLRAAQDSLGEITGAMTPDDLLGKIFSSFCIGK 456 >gi|195151833|ref|XP_002016843.1| GL21987 [Drosophila persimilis] gi|194111900|gb|EDW33943.1| GL21987 [Drosophila persimilis] Length = 493 Score = 259 bits (663), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 161/478 (33%), Positives = 255/478 (53%), Gaps = 52/478 (10%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFI--CKKKKPFPRKASLRYFF-GLDGRILDK 63 TI+++S+G + +S+IR+SGP + I C +P R+A L+ FF + ++D+ Sbjct: 24 TIYSLSSGHVKCGVSVIRVSGPQTKRALRAIVGCNDYEPKARQAYLKSFFHPISKEMIDR 83 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 GLL+ FP P SFTGED+ EF VHG +AV+ +L+ L ++ LR A PGEF++RAF GK+ Sbjct: 84 GLLLWFPGPASFTGEDACEFQVHGSLAVIAAMLDALGRLDGLRPAEPGEFTKRAFFGGKL 143 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL E E LADLI +ETE QR+ ++ G L LY +W +L + +EA +DF+EEE Sbjct: 144 DLTEVEGLADLIHAETEAQRKQALLQSMGALGRLYNKWRKRLIRCAAHLEAYIDFAEEEQ 203 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 ++ ++ ++ ++ +I +H++ + GE++R+G + VI+G N GKSSL N L ++ Sbjct: 204 IEGGVILQLTKELKAVRGEIRNHLNDQRQGELLRDGVRTVIIGAPNVGKSSLLNLLCQRS 263 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEVENADLI 302 V+IVT+ GTTRD++ + GY V SDTAG+R T D +E+EG+ R + +DLI Sbjct: 264 VSIVTEQAGTTRDIIETMHNFGGYPVIFSDTAGLRRNTADSIEREGMARAKKCLAESDLI 323 Query: 303 LLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362 LLL + + +E+ + + + +Y E D +G+ ++ + NK ++ Sbjct: 324 LLLTDAMAVRELDSNETV--------AGYVESYLNELDIASDLCSGKRVQLVANKTDTLS 375 Query: 363 SNKFKKLP-----FSIPSHK------------RHLYHLSQTVRYLEMASLNEK------D 399 + +L SI HK + L L T R N + Sbjct: 376 LEECHRLDKLSSILSISCHKPANMATFLNALEQQLQELCGTPRAEHPRITNTRYRQQLER 435 Query: 400 C-----------------GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 C + I A LR + + +ITG V E +LD++F FCIGK Sbjct: 436 CIENIDIFLRDYKPDVFPDMAIAAAKLRNSVRCIERITGHVSCEDILDVVFKDFCIGK 493 >gi|320581325|gb|EFW95546.1| hypothetical protein HPODL_2880 [Pichia angusta DL-1] Length = 479 Score = 259 bits (663), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 159/462 (34%), Positives = 262/462 (56%), Gaps = 29/462 (6%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR-ILDKGL 65 T++A+ST SAI+++R++GPS + + +++P PR A+L + + ILD+ + Sbjct: 19 TVYALSTYPARSAIAVVRITGPSSVSIYRALTARQQPKPRIATLAKLYHPKTKVILDEAI 78 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILE--ELAKMPN--LRLANPGEFSRRAFENG 121 ++ F P S+TGED E H+HGG AV+ I+E EL P +R A PG+FS++AF+NG Sbjct: 79 VLYFKGPNSYTGEDMLELHLHGGTAVIKCIMESLELLHTPANPIRPAEPGDFSKKAFQNG 138 Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181 K+DL +AE + LI +ETE QR LS+ M GE L+ W +++ + + I +DF EE Sbjct: 139 KMDLTQAEGINSLIHAETERQRLLSLTSMKGETKELFHHWREQILNTYALITTLIDFGEE 198 Query: 182 EDVQNFSS--KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 D++ + +DI L+ ++ ++ + + + + +G+KI + G NAGKSSL N + Sbjct: 199 HDIEEIGQLFERAESDIKTLETEVRGYLERVQRSQTLMDGFKITLSGPPNAGKSSLLNII 258 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 A +D AIV++I GTTRD + + LD+ GY V I DTAGIR ++ +E+EGI+R ++ A Sbjct: 259 ANEDRAIVSEIEGTTRDSIEVPLDINGYKVVIGDTAGIRNAENQIEQEGIRRAKMKTSEA 318 Query: 300 DLILLL-----KEINS--KKEISFPKNIDFIFIGTKSDLYS---------TYTEEYD--- 340 DL L+L +E+ K I + I KSDL + +E++ Sbjct: 319 DLNLVLLPCTPRELRKEMKDHIRSCDKEKLLIILNKSDLVTPDQVGNLVAQLEQEFEPKE 378 Query: 341 -HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399 +IS +G+ +L+N I L + + P + S +++ + E ++ K Sbjct: 379 IKVISCRNKDGIHDLLNTITQKLDHWTQDEPIFVSSRVQNIIQHDLLFGFEEFY-MHSKS 437 Query: 400 CGLDIIAENLRLASVSLGKITG-CVDVEQLLDIIFSKFCIGK 440 + + AE L+++ +GKITG + VE++L IF+ FCIGK Sbjct: 438 NDVVLAAEALKISMEGIGKITGEAIGVEEILGSIFANFCIGK 479 >gi|219871858|ref|YP_002476233.1| tRNA modification GTPase TrmE [Haemophilus parasuis SH0165] gi|219692062|gb|ACL33285.1| tRNA modification GTPase TrmE [Haemophilus parasuis SH0165] Length = 452 Score = 259 bits (663), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 172/462 (37%), Positives = 255/462 (55%), Gaps = 37/462 (8%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64 KETI A +T I I+R+SGP +V + + K P PR A F DG +LD+G Sbjct: 2 KETITAQATPIGRGGIGILRVSGPLATEVAQAVLGKC-PKPRIADYLPFKDEDGTVLDQG 60 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 + + F +P SFTGED E HGG +++ +L + K+ +R+A GEFS +AF N K+D Sbjct: 61 IALFFKAPNSFTGEDVLELQGHGGQVILDLLLNRILKVKGVRIARAGEFSEQAFLNDKLD 120 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ADLI + +E R +++ + GE S+ + +D + ++R+++EA +DF +EE + Sbjct: 121 LAQAEAIADLIDATSEQAARSALKSLQGEFSNKINELVDSVIYLRTYVEAAIDFPDEE-I 179 Query: 185 QNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 + ++ LN+I+ ++ QG I+R G K+VI G NAGKSSL NALA Sbjct: 180 DFLADGKIEAKLNEIIAQLANVRQEAKQGT---ILREGMKVVIAGKPNAGKSSLLNALAG 236 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 ++ AIVTDI GTTRDVL + ++G + I DTAG+RE D VEK GIKR + E+E AD Sbjct: 237 REAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVEKIGIKRAWDEIEQADH 296 Query: 302 ILLLKEINSKKEISF-----------PKNIDFIFIGTKSDLYSTYTEEYDHLI------- 343 +LL+ + N + SF PKNI I K DL T E + L+ Sbjct: 297 VLLMIDSNESQADSFQQEWATFLAKLPKNIPVTVIRNKVDL----TGEAESLVQADNFTV 352 Query: 344 ---SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEK 398 S+ T G++ L +K + + + +RHL L +LE L + Sbjct: 353 IRLSAQTKVGVDLLREHLKKSMGYQ-SSTEGGFIARRRHLVALETAAEHLERGHIQLTQF 411 Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G +++AE LR+ +L +ITG + LL IFS FCIGK Sbjct: 412 YAG-ELLAEELRMVQNALSEITGQFTSDDLLGNIFSSFCIGK 452 >gi|149204377|ref|ZP_01881344.1| tRNA modification GTPase [Roseovarius sp. TM1035] gi|149142262|gb|EDM30309.1| tRNA modification GTPase [Roseovarius sp. TM1035] Length = 428 Score = 259 bits (663), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 166/437 (37%), Positives = 250/437 (57%), Gaps = 12/437 (2%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +T++A++T + ++++R+SGP F C IC P PR + LR G LD+ L Sbjct: 2 DTVYALATAQGKAGVAVVRVSGPRAFDACLHICGDV-PEPRNSVLRVLRDGQGAQLDQAL 60 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 ++ F +SFTGE++ EFH+HG +AVV +L+ L + LRLA PGEF+RRA ENG++DL Sbjct: 61 VLTFAEKQSFTGEETVEFHLHGSVAVVAAVLDVLGGIDGLRLAEPGEFTRRALENGRLDL 120 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 E LADLI +ETE QR+ ++ SG L W L + +EA +DF++EE V Sbjct: 121 ARVEGLADLIDAETEAQRKQALRVFSGALGGKCEAWRGLLLRAVALLEATIDFADEE-VP 179 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S EV + + + I+ +GE IR+G+++ I+G N GKS+L N+LA ++ A Sbjct: 180 VDVSFEVTALVREVAEALEREIAGSWVGERIRSGFEVAIIGAPNVGKSTLLNSLAGREAA 239 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 I ++ GTTRDV+ + +DL G V + DTAG+RET D VE GI R + ADL + L Sbjct: 240 ITSEYAGTTRDVIEVRMDLAGLPVTLLDTAGLRETVDAVESIGIARARARADAADLRVFL 299 Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365 E K E+ P+ D I + K+DL ++ IS TG G+ EL+ +I +LS + Sbjct: 300 VEAGEKPEMD-PRE-DDIILWAKADLLG----RVENAISGKTGAGVSELVARIGQVLSKR 353 Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLASVSLGKITGCV 423 I + RH + + + L+ A L + ++ AE LR+A +L + G + Sbjct: 354 VAG--AGIATRARHRQAMERGLGALQAALELLPYGEASAEVAAEELRVAIRALDSLVGRI 411 Query: 424 DVEQLLDIIFSKFCIGK 440 DVE +LD IF+ FC+GK Sbjct: 412 DVEMVLDEIFASFCLGK 428 >gi|258544267|ref|ZP_05704501.1| tRNA modification GTPase TrmE [Cardiobacterium hominis ATCC 15826] gi|258520505|gb|EEV89364.1| tRNA modification GTPase TrmE [Cardiobacterium hominis ATCC 15826] Length = 446 Score = 259 bits (662), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 162/452 (35%), Positives = 254/452 (56%), Gaps = 18/452 (3%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M ++TI A++T +SIIR+SG + + P PR+A+L + G Sbjct: 1 MQPARDTIAAIATPPGTGGVSIIRISGGEALAIAARVSGIT-PAPRRATLAHIRDARGDT 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+ LL+ +P+P S+TGED+ E HGGIAV +L + RLA PGE++RRA+ N Sbjct: 60 LDQALLLYYPAPHSYTGEDTLEIQGHGGIAVTQAVLAAVLDA-GARLAEPGEYTRRAYLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 KIDL +AE++ADLI++ ++ + + + G+ S L +R +IEA LDF E Sbjct: 119 NKIDLAQAEAIADLINARSQAAVKAANRSLQGDFSRQIETLAADLLALRIYIEAALDFPE 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + ++ + + + ++Q G ++ +G +VI G NAGKSSL NAL Sbjct: 179 EE-IDFLREGDIAARLQGWGERLRTLLAQSTQGRLMNDGINLVIAGKPNAGKSSLLNALV 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVT GTTRD++ + + G V I DTAG+RE D+VE+EGI+RT + AD Sbjct: 238 GEERAIVTAQAGTTRDIVRETILIHGMPVNILDTAGLREASDLVEQEGIRRTRQALNQAD 297 Query: 301 LILLLKE---INSKKEISFP---KNIDFIFIGTKSDLY--STYTEEYDHL-ISSFTGEGL 351 LILLL++ ++ + + + P + + K+D + + D L +S+ TG G+ Sbjct: 298 LILLLRDGSALDDRGDETLPPESADTPLLLAYNKADQTPPAVQAQHADGLWLSAKTGAGI 357 Query: 352 EELINKIK-SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDIIAEN 408 + L + I ++ + ++ P+ + +RHL L Q R+ + +A L+ G ++IAE+ Sbjct: 358 DALRDAIACAVGRDSREESPYI--ARERHLRALHQAERHYQHALAQLHASQNG-ELIAED 414 Query: 409 LRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LRLA +LG ITG V + LL IFS FCIGK Sbjct: 415 LRLAHDALGSITGAVSSDDLLGHIFSSFCIGK 446 >gi|157826149|ref|YP_001493869.1| tRNA modification GTPase TrmE [Rickettsia akari str. Hartford] gi|166234814|sp|A8GPN6|MNME_RICAH RecName: Full=tRNA modification GTPase mnmE gi|157800107|gb|ABV75361.1| tRNA modification GTPase TrmE [Rickettsia akari str. Hartford] Length = 445 Score = 259 bits (662), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 161/450 (35%), Positives = 263/450 (58%), Gaps = 21/450 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR-ILDKG 64 ETIFA S+ + +++ R+SGP +V + + KK PR + + + ++D Sbjct: 2 ETIFAQSSAFGKAGVAVFRISGPKSLEVLQLLTGKKAFKPRLMYYQQIIAPETKELIDNA 61 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 +++ F P SFTGED E H HG A+ ++ L + ++RLA GEF++RAF N K D Sbjct: 62 MVVYFKLPNSFTGEDVVEIHTHGSKAISIMMINTLLNISDIRLAEAGEFTKRAFLNNKFD 121 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L AE +ADLI++ET MQ R ++ SG L LY W +L I S +EA +DF +ED+ Sbjct: 122 LTAAEGIADLINAETIMQHRQAIRQASGRLEELYNSWRSQLLKIISLLEAYIDFP-DEDI 180 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + +V N L N+IS++++ + GE++ +G K+ I+G N GKSSL N L ++D+ Sbjct: 181 PDSVLNDVNNTHKNLVNEISNYLNDNRRGELLNSGLKLAIVGPPNTGKSSLLNFLMQRDI 240 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLIL 303 A+V++I GTTRD++ LD+ GY + + DTAGIR E+ DI+E+EGIKR + AD+ + Sbjct: 241 AMVSNIAGTTRDIIEGHLDIGGYPIILQDTAGIREESSDIIEQEGIKRAINSAKTADIKI 300 Query: 304 LL---KEINS--KKEISFPKNIDFIFIGTKSDLYS-----TYTEEYDHL-ISSFTGEGLE 352 ++ K+++S ++I+ + + I I K DL + ++Y L +S L Sbjct: 301 IMFDAKKLDSSINEDITGLIDENTIVIINKIDLIEPSKVFSIEDKYKCLRVSVKNNIALS 360 Query: 353 ELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLR 410 ++ I++I N F + P+ +++RH ++L Q + +L SL D L + E++R Sbjct: 361 SILKNIENIAENMAGFTETPY--ITNQRHRHYLKQALSHLTDFSL---DNDLVLATEDIR 415 Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + + +G ITG ++VE++L IF FCIGK Sbjct: 416 ITARCIGAITGVINVEEILGEIFQNFCIGK 445 >gi|330991277|ref|ZP_08315228.1| tRNA modification GTPase mnmE [Gluconacetobacter sp. SXCC-1] gi|329761296|gb|EGG77789.1| tRNA modification GTPase mnmE [Gluconacetobacter sp. SXCC-1] Length = 372 Score = 259 bits (662), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 147/390 (37%), Positives = 231/390 (59%), Gaps = 28/390 (7%) Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 +LD+ L++ FP P+S+TGEDSAE H+H G AV+N + + L + R A PGEFSRRAF Sbjct: 2 LLDRALVLWFPGPDSYTGEDSAELHLHAGQAVINAVADALVAL-GARPAEPGEFSRRAFM 60 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 +G++DL++AE +ADLI +ETE QR+ ++ + G S LY W D+L + + EA +DF Sbjct: 61 HGRMDLMQAEGIADLIEAETEAQRQQALSQVDGAQSRLYQHWADRLRTLLAHQEALIDFP 120 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 +EE + +E+ N + L + + +++++G E +R G I+G N GKSSL NAL Sbjct: 121 DEE-LPPEVEQELCNGLRELHDTMQAYLAEGAGAERLRRGLVFAIVGEPNVGKSSLLNAL 179 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 A +D AIV+ GTTRD + + + + V + DTAG+RET+D +E EG++R+ V+ A Sbjct: 180 AGRDAAIVSSRAGTTRDAIEVRMVMGNVPVTLVDTAGLRETEDEIEAEGVRRSLFHVKQA 239 Query: 300 DLILLLKEINSKKEISFPKNIDF--IFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINK 357 D ++ + N P ++D + + K+DL T + IS T G++ L Sbjct: 240 DCVVQVFAGNPA-----PPSLDGADVLVCNKTDL--TPAPDGAIGISVLTNTGMDVL--- 289 Query: 358 IKSILSNKFKKL-------PFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLR 410 +++L++K + L PF + RH + +TVR++ A ++ E +R Sbjct: 290 -RTVLADKARALTAGRAVAPF---TRARHRAAIEETVRHIGQALAMPWP---EMRGEEMR 342 Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LA +LG++TG VDVE LLD +F +FCIGK Sbjct: 343 LAMRALGRLTGAVDVEALLDTVFGQFCIGK 372 >gi|157829012|ref|YP_001495254.1| tRNA modification GTPase TrmE [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933734|ref|YP_001650523.1| tRNA modification GTPase TrmE [Rickettsia rickettsii str. Iowa] gi|166234817|sp|A8GTM1|MNME_RICRS RecName: Full=tRNA modification GTPase mnmE gi|189036206|sp|B0BV57|MNME_RICRO RecName: Full=tRNA modification GTPase mnmE gi|157801493|gb|ABV76746.1| tRNA modification GTPase TrmE [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908821|gb|ABY73117.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase [Rickettsia rickettsii str. Iowa] Length = 445 Score = 259 bits (662), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 162/456 (35%), Positives = 256/456 (56%), Gaps = 33/456 (7%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD----GRIL 61 ETIFA S+ + +++ R+SGP +V + + +K K+ L Y+ + ++ Sbjct: 2 ETIFAQSSAFGKAGVAVFRISGPKSLEVLQLLTGRKD---FKSRLMYYQQITVPETKELI 58 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121 D +++ F SP SFTGED E H HG A+ + L + +RLA GEF++RAF N Sbjct: 59 DNVMVVYFKSPGSFTGEDVVEIHTHGSKAISIMLTNALLNIAGIRLAEAGEFTKRAFLNN 118 Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181 K+DL AE +ADLI++ET MQ + ++ SG+L +LY W +L I S +EA +DF + Sbjct: 119 KLDLTAAEGIADLINAETIMQHKQAIRQASGKLEALYNNWRSQLLKILSLLEAYIDFP-D 177 Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 ED+ + EV N L N IS +++ + GE++R+G K+ I+G N GKSSL N L + Sbjct: 178 EDIPDTVLNEVTNTHTILVNTISEYLNDNRKGELLRSGLKLAIIGPPNVGKSSLLNFLMQ 237 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENAD 300 +D+AIV++I GTTRD++ LD+ GY + + DTAGIR E+ DI+E+EGIKR + AD Sbjct: 238 RDIAIVSNIAGTTRDIIEGHLDIGGYPIILQDTAGIREESSDIIEQEGIKRAINSAKTAD 297 Query: 301 LILLL-------KEIN-------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF 346 + +++ IN + I+ ID I S ++S + +S Sbjct: 298 IKIIMFDAEKLDSSINEDIINLIDENTITIINKIDLI---EASKIFSIENKYKCLRVSVK 354 Query: 347 TGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI 404 L ++ I++I N F + P+ +++RH +L Q + +L SL D L + Sbjct: 355 NNIALSSILKNIENIAENMAGFTETPY--ITNQRHRNYLQQALSHLTAFSL---DNDLVL 409 Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E++R+ + +G ITG ++VE++L IF FCIGK Sbjct: 410 ATEDIRMTARCIGAITGVINVEEILGEIFKNFCIGK 445 >gi|258626075|ref|ZP_05720926.1| tRNA modification GTPase [Vibrio mimicus VM603] gi|258581601|gb|EEW06499.1| tRNA modification GTPase [Vibrio mimicus VM603] Length = 464 Score = 259 bits (662), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 162/453 (35%), Positives = 251/453 (55%), Gaps = 21/453 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + IIR+SGP QV + + + PR A F +G+ LD+G+ Sbjct: 15 DTIVAQATAPGRGGVGIIRVSGPLAAQVAQTVTGRTL-RPRYAEYLPFTDENGQQLDQGI 73 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + FP+P SFTGED E HGG V++ ++ + ++ +R A PGEFS RAF N K+DL Sbjct: 74 ALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQINGVRPARPGEFSERAFLNDKMDL 133 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E + +++ + GE S ++ L H+R ++EA +DF EEE + Sbjct: 134 TQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPEEE-ID 192 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 + +V D+ + +++++ + G I+R G K+VI G NAGKSSL NAL+ K+ A Sbjct: 193 FLADGKVSADLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKESA 252 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTDI GTTRDVL + ++G + I DTAG+R+ D VEK GI+R + E+ AD +L + Sbjct: 253 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDAVEKIGIERAWEEIRQADRVLFM 312 Query: 306 -----KEINSKKEI------SFPKNIDFIFIGTKSD-----LYSTYTEEYDHL-ISSFTG 348 E +EI P+NI I K+D L + + + +S+ TG Sbjct: 313 VDGTTTEATDPQEIWPDFVDKLPENIGITVIRNKADQTGEPLGICHVNQPTLIRLSAKTG 372 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407 +G++ L +K + + + +RHL L + +L++ E +I+AE Sbjct: 373 QGVDALRQHLKECMGFAGNQ-EGGFMARRRHLDALERAAEHLDIGQQQLEGYMAGEILAE 431 Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LR+A L +ITG + LL IFS FCIGK Sbjct: 432 ELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 464 >gi|319639448|ref|ZP_07994198.1| tRNA modification GTPase mnmE [Neisseria mucosa C102] gi|317399343|gb|EFV80014.1| tRNA modification GTPase mnmE [Neisseria mucosa C102] Length = 454 Score = 259 bits (662), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 166/458 (36%), Positives = 258/458 (56%), Gaps = 22/458 (4%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+ + TI A++T + +IRLSG + + + + K P PR A F G DG+ Sbjct: 1 MSASQPTIAAIATAPGRGGVGVIRLSGKNLLPLVQTLSGGKTPKPRTALYTDFLGGDGQP 60 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D G+L+ F +P SFTGED E HGG V++ +L ++ R+A PGEF++RAF N Sbjct: 61 IDNGILLYFAAPASFTGEDVIELQGHGGPVVMDMLLSRCLEL-GARMAEPGEFTKRAFLN 119 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AES+ADLI + ++ R+++ + G S + +D L +R +EA LDF E Sbjct: 120 NKLDLAQAESVADLIDASSKSAARMALRSLKGAFSQHIHELVDDLITLRMLVEATLDFPE 179 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E D+ + + + L+ + + ++ + G I+R G +V++G N GKSSL NALA Sbjct: 180 E-DIDFLEAADARGKLQALQGRLKTVLASAEQGAILREGMNVVLVGAPNVGKSSLLNALA 238 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 D+AIVTDI GTTRD + + L+G V I DTAG+RETDD+VE+ GI+R+ V AD Sbjct: 239 GDDIAIVTDIAGTTRDTVREQITLDGVPVHIIDTAGLRETDDVVEQIGIERSRKAVSEAD 298 Query: 301 LILLL----KEINSKKEI---SFPKNIDFIFIGTKSDLYS-TYTEEYDHL---------- 342 + L+L + +N+K + S P+ + I I K+DL D L Sbjct: 299 VALILIDPREGVNAKTQAILNSLPEGLKKIEIHNKADLTGEPVAVRSDGLAQTGADTVIS 358 Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402 +S+ TG GL+ L + + + + + + + RHL L + LE A+L + + + Sbjct: 359 LSAKTGAGLDLLKHALLQEVGWQGESESLFL-ARSRHLNALHEAEAELENAALCDNNQ-I 416 Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++ AE+LRLA + +ITG + LL +IFS+FCIGK Sbjct: 417 ELFAEHLRLAQNACSEITGEFTADDLLGVIFSRFCIGK 454 >gi|312882243|ref|ZP_07741989.1| tRNA modification GTPase TrmE [Vibrio caribbenthicus ATCC BAA-2122] gi|309370087|gb|EFP97593.1| tRNA modification GTPase TrmE [Vibrio caribbenthicus ATCC BAA-2122] Length = 453 Score = 259 bits (662), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 166/457 (36%), Positives = 249/457 (54%), Gaps = 29/457 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + IIR+SGP QV I K PR A F DG +D+G+ Sbjct: 4 DTIVAQATAPGRGGVGIIRVSGPLATQVASEITGKDL-RPRYAEYLAFKAQDGTEIDQGI 62 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + FP+P SFTGED E HGG V++ +++ + +P LR A PGEFS RAF N K+DL Sbjct: 63 ALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILTIPGLRTARPGEFSERAFLNDKLDL 122 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E + ++ + G S ++ L H+R ++EA +DF EEE + Sbjct: 123 AQAEAIADLIDASSEEAAKSALMSLQGAFSGRIHTLVESLIHLRIYVEAAIDFPEEE-ID 181 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 + +V D+ + +++++ + G I+R G K+VI G NAGKSSL NAL+ K+ A Sbjct: 182 FLADGKVAGDLQSIIDNLAAVRQEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKESA 241 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTDI GTTRDVL + ++G + I DTAG+R+ D VEK GI+R + E+ AD +L + Sbjct: 242 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVEKIGIERAWEEISQADRVLFM 301 Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSD-----LYSTYTEEYDHL-ISSFTG 348 + + +E P NI I K+D L + + + +S+ TG Sbjct: 302 VDGTTTQETDPKQIWPDFIDRLPDNIGITVIRNKADQTDEPLGICHVNDPTLIRLSAKTG 361 Query: 349 EGLEELINKIKSIL----SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLD 403 EG+E L +K + SN+ + + +RHL L + +L++ E + Sbjct: 362 EGVESLRLHLKQCMGFSGSNEGGFM-----ARRRHLEALDRAAEHLQIGQQQLESYMAGE 416 Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 I+AE LR+ L +ITG + LL IFS FCIGK Sbjct: 417 ILAEELRITQQHLSEITGEFSSDDLLGRIFSSFCIGK 453 >gi|157373142|ref|YP_001471742.1| tRNA modification GTPase TrmE [Shewanella sediminis HAW-EB3] gi|189036210|sp|A8FP41|MNME_SHESH RecName: Full=tRNA modification GTPase mnmE gi|157315516|gb|ABV34614.1| tRNA modification GTPase TrmE [Shewanella sediminis HAW-EB3] Length = 453 Score = 259 bits (661), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 161/454 (35%), Positives = 254/454 (55%), Gaps = 23/454 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + IIR+SG +V + P R A F +G ++D+G+ Sbjct: 4 DTIVAQATAPGRGGVGIIRISGDQASEVAMALLGHI-PKTRYADYCDFKDGEGEVIDQGI 62 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + F P SFTGED E HGG V++ +++ + ++ +R+A PGEFS +AF N K+DL Sbjct: 63 ALYFQGPNSFTGEDVLELQGHGGQIVLDMLIKRVMEVEGIRIAKPGEFSEQAFMNDKLDL 122 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E + ++ + GE S+ + +D++T++R ++EA +DF +EE V Sbjct: 123 TQAEAIADLIDATSEQAAKSALNSLQGEFSTQVHELVDRVTNLRLYVEAAIDFPDEE-VD 181 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S ++ + + + S + K G IIR G K+VI G NAGKSSL NALA K+ A Sbjct: 182 FLSDGKIAGSLYRIITKLDSVQASAKQGAIIREGMKVVIAGRPNAGKSSLLNALAGKESA 241 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVT+I GTTRDVL + L+G + I DTAG+R+T D VE+ GI+R + E+E AD +L + Sbjct: 242 IVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTADTVEQIGIERAWAEIETADQVLFM 301 Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYS---TYTEEYDH---LISSFTG 348 + + + P+ + + K+D+ T T+++ H IS+ TG Sbjct: 302 VDGTTTDAVDPHEIWPDFIDRLPEKLGITVVRNKADITGEALTVTQDHGHNVFRISAKTG 361 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIA 406 G+EEL +KS++ + L + +RHL L +L + L G +++A Sbjct: 362 LGVEELQQHLKSLMGYQ-SNLEGGFIARRRHLEALELATSHLMIGKEQLEVYQAG-ELLA 419 Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E LR+ ++L +ITG + LL IFS FCIGK Sbjct: 420 EELRMTQMALSEITGKFTSDDLLGKIFSSFCIGK 453 >gi|298369774|ref|ZP_06981091.1| tRNA modification GTPase TrmE [Neisseria sp. oral taxon 014 str. F0314] gi|298282331|gb|EFI23819.1| tRNA modification GTPase TrmE [Neisseria sp. oral taxon 014 str. F0314] Length = 454 Score = 259 bits (661), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 166/458 (36%), Positives = 257/458 (56%), Gaps = 22/458 (4%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+ + TI A++T + +IRLSG + + + + K P PR A F G DG+ Sbjct: 1 MSASQPTIAAIATAPGRGGVGVIRLSGKNLLPLAQTLSGGKTPKPRTALYTDFLGGDGQP 60 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D G+L+ F +P SFTGED E HGG V++ +L ++ R+A PGEF++RAF N Sbjct: 61 IDNGILLYFAAPASFTGEDVVELQGHGGPVVMDMLLSRCLEL-GARMAQPGEFTKRAFLN 119 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AES+ADLI + ++ R+++ + G S + +D L +R +EA LDF E Sbjct: 120 NKLDLAQAESVADLIDASSKSAARMALRSLKGAFSRHIHELVDDLITLRMLVEATLDFPE 179 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E D+ + + + L+ + + ++ + G I+R G +V++G N GKSSL NALA Sbjct: 180 E-DIDFLEAADARGKLQALQGRLKTVLASAEQGAILREGMNVVLVGAPNVGKSSLLNALA 238 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 D+AIVTDI GTTRD + + L+G V I DTAG+RETDD+VE+ GI+R+ V AD Sbjct: 239 GDDIAIVTDIAGTTRDTVREQITLDGVPVHIIDTAGLRETDDVVEQIGIERSRKAVSEAD 298 Query: 301 LILLL----KEINSKKEI---SFPKNIDFIFIGTKSDLYST---------YTEEYDHLI- 343 + L+L + +N+K + S P + I I K+DL D +I Sbjct: 299 VALILIDPREGVNAKTQAILNSLPAGLKKIEIHNKADLTGEPVAVRSGGLAQTGADTVIS 358 Query: 344 -SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402 S+ TG GL+ L + + + + + + + RHL L + LE A+L + + + Sbjct: 359 LSAKTGAGLDLLKHALLQEVGWQGESESLFL-ARSRHLNALHEAEAELENAALCDNNQ-I 416 Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++ AE+LRLA + +ITG + LL +IFS+FCIGK Sbjct: 417 ELFAEHLRLAQNACSEITGEFTADDLLGVIFSRFCIGK 454 >gi|146295079|ref|YP_001185503.1| tRNA modification GTPase TrmE [Shewanella putrefaciens CN-32] gi|166991116|sp|A4YCM1|MNME_SHEPC RecName: Full=tRNA modification GTPase mnmE gi|145566769|gb|ABP77704.1| tRNA modification GTPase trmE [Shewanella putrefaciens CN-32] Length = 453 Score = 259 bits (661), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 163/453 (35%), Positives = 255/453 (56%), Gaps = 21/453 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + IIR+SG V + P R A F G+++D+G+ Sbjct: 4 DTIVAQATAPGRGGVGIIRISGDKATDVAMAVLGHL-PKTRYADYCDFKNATGQVIDQGI 62 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + F P SFTGED E HGG V++ +++ + ++ +R+A PGEFS +AF N K+DL Sbjct: 63 ALFFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVLEVEGIRIAKPGEFSEQAFMNDKLDL 122 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E + +++ + GE S + +D++T++R ++EA +DF +EE V Sbjct: 123 TQAEAIADLIDATSEQAAKSALQSLQGEFSKEVHELVDQVTNLRLYVEAAIDFPDEE-VD 181 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S ++ N + + + +S+ + K G IIR G K+VI G NAGKSSL NALA K+ A Sbjct: 182 FLSDGKIANALYKIIDKLSTVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKESA 241 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVT+I GTTRDVL + L+G + I DTAG+R+T D VE+ GI+R + E+ +AD +L + Sbjct: 242 IVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTTDTVEQIGIERAWNEINSADRVLFM 301 Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYS---TYTEEYD---HLISSFTG 348 + + + P N+ I K+DL TEE + IS+ TG Sbjct: 302 VDGTTTDAVDPHDIWPDFINRLPANLGVTVIRNKADLTGENLDMTEEKGYSVYRISAKTG 361 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407 G++EL +KS++ + L + +RHL L +L++ E +++AE Sbjct: 362 LGVDELKLHLKSLMGYQ-SNLEGGFIARRRHLEALDVAASHLQLGKEQLEVYLAGELLAE 420 Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LR+A ++L +ITG + LL IFS FCIGK Sbjct: 421 ELRMAQLALSEITGRFTSDDLLGKIFSSFCIGK 453 >gi|261365695|ref|ZP_05978578.1| tRNA modification GTPase TrmE [Neisseria mucosa ATCC 25996] gi|288565791|gb|EFC87351.1| tRNA modification GTPase TrmE [Neisseria mucosa ATCC 25996] Length = 454 Score = 259 bits (661), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 166/458 (36%), Positives = 258/458 (56%), Gaps = 22/458 (4%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+ + TI A++T + +IRLSG + + + + K P PR A F G DG+ Sbjct: 1 MSASQPTIAAIATAPGRGGVGVIRLSGKNLLPLAQTLSGGKTPKPRTALYTDFLGGDGQP 60 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D G+L+ F +P SFTGED E HGG V++ +L ++ R+A PGEF++RAF N Sbjct: 61 IDNGILLYFAAPASFTGEDVIELQGHGGPVVMDMLLSRCLEL-GARMAEPGEFTKRAFLN 119 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AES+ADLI + ++ R+++ + G S + +D L +R +EA LDF E Sbjct: 120 NKLDLAQAESVADLIDASSKSAARMALRSLKGAFSQHIHELVDDLITLRMLVEATLDFPE 179 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E D+ + + + L+ + + ++ + G I+R G +V++G N GKSSL NALA Sbjct: 180 E-DIDFLEAADARGKLQALQGRLKTVLASAEQGAILREGMNVVLVGAPNVGKSSLLNALA 238 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 D+AIVTDI GTTRD + + L+G V I DTAG+RETDD+VE+ GI+R+ V AD Sbjct: 239 GDDIAIVTDIAGTTRDTVREQITLDGVPVHIIDTAGLRETDDVVEQIGIERSRKAVSEAD 298 Query: 301 LILLL----KEINSKKEI---SFPKNIDFIFIGTKSDLYS-TYTEEYDHL---------- 342 + L+L + +N+K + S P+ + I I K+DL D L Sbjct: 299 VALILIDPREGLNAKTQAILNSLPEGLKKIEIHNKADLTGEPVAVRSDGLAQTGADTVIS 358 Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402 +S+ TG GL+ L + + + + + + + RHL L + LE A+L + + + Sbjct: 359 LSAKTGAGLDLLKHALLQEVGWQGESESLFL-ARSRHLNALHEAEAELENAALCDNNQ-I 416 Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++ AE+LRLA + +ITG + LL +IFS+FCIGK Sbjct: 417 ELFAEHLRLAQNACSEITGEFTADDLLGVIFSRFCIGK 454 >gi|195450224|ref|XP_002072419.1| GK22335 [Drosophila willistoni] gi|194168504|gb|EDW83405.1| GK22335 [Drosophila willistoni] Length = 507 Score = 259 bits (661), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 162/492 (32%), Positives = 257/492 (52%), Gaps = 68/492 (13%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK----------KPFPRKASLRYFF-G 55 TI+++S+G + +S+IRLSGP Q I +P PR+A L+ F+ Sbjct: 26 TIYSLSSGHVKCGVSVIRLSGPRTKQALRAIIASGSKNTQNGFEFEPKPRQAYLKSFYHP 85 Query: 56 LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 + ++D+GLL+ FP P SFTGEDS EF VHG +AV+ +L+ L + LR A PGEF++ Sbjct: 86 VSKEMIDRGLLLWFPGPASFTGEDSCEFQVHGSLAVIAAMLDALGQCDGLRPAEPGEFTK 145 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF GK+DL E E LADLI +ETE QR+ ++ +G L+ LY W +L + +EA Sbjct: 146 RAFFGGKLDLTEVEGLADLIHAETEAQRKQALLQSTGALARLYDSWRKRLIRCAAHLEAY 205 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +DF+EEE ++ ++ ++ +K +I H++ + GE++R+G + I+G N GKSSL Sbjct: 206 IDFAEEEQIEGGVILQLTRELNTVKAEIRDHLNDQRQGELLRDGVRTCIVGAPNVGKSSL 265 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFL 294 N L ++ V+IVT GTTRD++ + GY V +DTAG+R +T D +E EG++R Sbjct: 266 LNMLCQRSVSIVTPQAGTTRDIIETMHNFGGYPVVFADTAGLRRQTSDAIELEGMQRAKQ 325 Query: 295 EVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY----DHLISSFTGEG 350 + +DLILL+ + +E++ ++S + Y E+Y D + + G Sbjct: 326 WINQSDLILLVAD---ARELA-------TLDSSQSKSLTNYIEKYLNDLDIQLDLYNGNV 375 Query: 351 LEELINKIKSILSNKFKKL------------------------------------PFSIP 374 L+ + NK ++ +++ K L P + Sbjct: 376 LKLVANKTDTLTTDELKNLHKLSNILTISCLQPTNEALQRFLQALEQQLQQLCGTPRAEH 435 Query: 375 SHKRHLYHLSQTVRYLEMASLNEKDCGLD------IIAENLRLASVSLGKITGCVDVEQL 428 H+ + Q R +E + D D I A+ LR + + +ITG V E + Sbjct: 436 PRITHMRYRQQLERCIEHIDIFLSDYKPDVYPDMAIAAQKLRQSVRCIERITGHVSCEDI 495 Query: 429 LDIIFSKFCIGK 440 LD++F FCIGK Sbjct: 496 LDVVFKDFCIGK 507 >gi|145344534|ref|XP_001416786.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144577012|gb|ABO95079.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 489 Score = 258 bits (660), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 165/489 (33%), Positives = 252/489 (51%), Gaps = 58/489 (11%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKAS--------------- 49 +ETI+A++T + +S++R+SGP+ + P +S Sbjct: 6 RETIYALATARGRAGVSVVRVSGPNARDALRLT---RPPGGANSSDGAATAAEHGRLRLV 62 Query: 50 --LRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRL 107 R D +D G + VF SP SFTGED E H HG AV +++ L + N R+ Sbjct: 63 EFARGDAARDEPPIDVGFVAVFASPRSFTGEDVVELHAHGSAAVQRALMDALGTLDNFRV 122 Query: 108 ANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSME-GMSGELSSLYGQWIDKLT 166 A GEFSRRAF NGK+DL +AE LADL+ ++TE QRR +M + S+Y W +L Sbjct: 123 AEAGEFSRRAFRNGKMDLTQAEGLADLLDADTEAQRRQAMMLSRNAAQRSMYETWRKELL 182 Query: 167 HIRSFIEADLDFSEEEDV-QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVIL 225 ++ EA LDF EEED+ + ++V + L++ + ++ GE+IR G ++ ++ Sbjct: 183 TCAAYCEAALDFGEEEDIASDVVERKVRERVKALRDTLQKYLDAPARGELIRRGVRVALV 242 Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVE 285 G N GKSS+ NALA +D AIV+ GTTRDVL + L+L GY V +SDTAG+RET+D VE Sbjct: 243 GSPNVGKSSMLNALAGRDAAIVSPHAGTTRDVLEVSLELGGYKVIVSDTAGLRETEDDVE 302 Query: 286 KEGIKRTFLEVENADLILLLKEINSK------KEISFPKNIDFIFIGTKSDLYS------ 333 K GI R E+AD+++ L + + K ++ K + + KSD S Sbjct: 303 KLGIARALERAEDADVVVALADATNDASNIDLKALNLSKKT-IVNVWNKSDALSDGQTRE 361 Query: 334 -------TYTEEYD-HLISSFTGEGLEELINKIKSILSNK---------FKKLPFSIPSH 376 T + Y+ ++S TG GL+ I+ + I++ K +I + Sbjct: 362 LMEIENETAADGYETAVVSCLTGAGLDGFISTLTRIVAQKCTIGDDASDANDSTLAI-TR 420 Query: 377 KRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASV-----SLGKITGCVDVEQLLDI 431 RH +L++ V L+ A + A L + +LG++TG DVE +LD+ Sbjct: 421 SRHRVNLARCVASLDAAVARARASSASASALELEAEELKLAARALGRVTGAYDVEDVLDV 480 Query: 432 IFSKFCIGK 440 +F FC+GK Sbjct: 481 VFRDFCVGK 489 >gi|152981181|ref|YP_001355383.1| tRNA modification GTPase TrmE [Janthinobacterium sp. Marseille] gi|205829159|sp|A6T4D6|MNME_JANMA RecName: Full=tRNA modification GTPase mnmE gi|151281258|gb|ABR89668.1| tRNA modification GTPase [Janthinobacterium sp. Marseille] Length = 465 Score = 258 bits (660), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 167/468 (35%), Positives = 251/468 (53%), Gaps = 31/468 (6%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP--FPRKASLRYFFGLDG 58 MN + I A++T I ++R+SG + + E +C K PR A+ F DG Sbjct: 1 MNFDSSPIAAIATAPGRGGIGVVRVSGKNISSIIEAVCATKGAELQPRHATFTNFVNADG 60 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEFSR 115 ++D+GL I F +P S+TGED E HGG V+ +L E LR+A PGEF+ Sbjct: 61 SVIDQGLAIYFKAPHSYTGEDVLELQGHGGPIVLQMLLTRCLEAGTDIGLRMAQPGEFTH 120 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF N K+DL +AE + DLI + TE + + + +SG S +DK+T++R +EA Sbjct: 121 RAFLNDKLDLAQAEGVIDLIEASTEAAAKSASQSLSGAFSKTIQDLVDKITNLRMLVEAT 180 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 LDF EEE + + + ++ + + +Q G ++R+G IV+ G N GKSSL Sbjct: 181 LDFPEEE-IDFLEKSDARGQLNGIREALQAVFTQASQGALLRDGLNIVLAGQPNVGKSSL 239 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRT 292 NALA DVAIVT I GTTRD + + +EG V + DTAGIR+ D VE+ GI+RT Sbjct: 240 LNALAGSDVAIVTAIAGTTRDKVIETIQIEGIPVNVIDTAGIRDASDATDEVERIGIERT 299 Query: 293 FLEVENADLILLLKEIN-----SKKEI--SFPKNIDFIFIGTKSDLYSTYTEEYDHL--- 342 + V+ AD+I+ + + N + ++I FP+NI + I K DL S + D + Sbjct: 300 WAAVKTADVIIHMLDANRGPTRADEQIVERFPENIPVMRIWNKIDL-SGHRPAIDRMPDS 358 Query: 343 ----ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398 +S+ +G++ L ++ ++ + + + +RHL L +LEMA+ + Sbjct: 359 THIYVSATDLQGMDLLRGELLRLIGWQQTGESLYL-ARERHLVALKSAHDHLEMAAQHAA 417 Query: 399 ------DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D LD+ AE LRLA L ITG + LL +IFS+FCIGK Sbjct: 418 HDSEATDPALDLFAEELRLAQERLSSITGEFTSDDLLGVIFSRFCIGK 465 >gi|327482917|gb|AEA77324.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae LMA3894-4] Length = 453 Score = 258 bits (660), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 162/453 (35%), Positives = 250/453 (55%), Gaps = 21/453 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T S + IIR+SGP V + + + PR A F DG+ LD+G+ Sbjct: 4 DTIVAQATAPGRSGVGIIRVSGPLAAHVAQTVTGRTL-RPRYAEYLPFTDEDGQQLDQGI 62 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + FP+P SFTGED E HGG V++ ++ + ++ +R A PGEFS RAF N K+DL Sbjct: 63 ALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIKGVRPARPGEFSERAFLNDKMDL 122 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E + +++ + GE S ++ L H+R ++EA +DF EEE + Sbjct: 123 TQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPEEE-ID 181 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 + +V D+ + +++++ + G I+R G K+VI G NAGKSSL NAL+ K+ A Sbjct: 182 FLADGKVSADLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKESA 241 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTDI GTTRDVL + ++G + I DTAG+R+ D VEK GI+R + E+ AD +L + Sbjct: 242 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDAVEKIGIERAWEEIRQADRVLFM 301 Query: 306 -----KEINSKKEI------SFPKNIDFIFIGTKSD-----LYSTYTEEYDHL-ISSFTG 348 E ++I P+NI I K+D L + + + +S+ TG Sbjct: 302 VDGTTTEATDPQDIWPDFVDKLPENIGITVIRNKADQTGEPLGICHVNQPTLIRLSAKTG 361 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407 +G++ L +K + + + +RHL L + +L + E +I+AE Sbjct: 362 QGVDALRQHLKECMGFSGNQ-EGGFMARRRHLDALERAAEHLAIGQQQLEGYMAGEILAE 420 Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LR+A L +ITG + LL IFS FCIGK Sbjct: 421 ELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 453 >gi|262402089|ref|ZP_06078653.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio sp. RC586] gi|262351735|gb|EEZ00867.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio sp. RC586] Length = 453 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 162/453 (35%), Positives = 250/453 (55%), Gaps = 21/453 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + IIR+SGP V + + + PR A F DG+ LD+G+ Sbjct: 4 DTIVAQATAPGRGGVGIIRVSGPLSAHVAQTVTGRTL-RPRYAEYLPFTDEDGQQLDQGI 62 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + FP+P SFTGED E HGG V++ ++ + ++ +R A PGEFS RAF N K+DL Sbjct: 63 ALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQINGVRPARPGEFSERAFLNDKMDL 122 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E + +++ + GE S ++ L H+R ++EA +DF EEE + Sbjct: 123 TQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPEEE-ID 181 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 + +V D+ + +++++ + G I+R G K+VI G NAGKSSL NAL+ K+ A Sbjct: 182 FLADGKVSADLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKESA 241 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTDI GTTRDVL + ++G + I DTAG+R+ D VEK GI+R + E+ AD +L + Sbjct: 242 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDAVEKIGIERAWEEIRQADRVLFM 301 Query: 306 -----KEINSKKEI------SFPKNIDFIFIGTKSD-----LYSTYTEEYDHL-ISSFTG 348 E +EI P+NI I K+D L + + + +S+ TG Sbjct: 302 VDGTTTEATDPQEIWPDFVDKLPENIGITVIRNKADQTGEPLGICHVNQPTLIRLSAKTG 361 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407 +G++ L +K + + + +RHL L + +L++ E +I+AE Sbjct: 362 QGVDALRQHLKECMGFAGNQ-EGGFMARRRHLDALERAAEHLDIGQQQLEGYMAGEILAE 420 Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LR+A L +ITG + LL IFS FCIGK Sbjct: 421 ELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 453 >gi|261346747|ref|ZP_05974391.1| tRNA modification GTPase TrmE [Providencia rustigianii DSM 4541] gi|282565147|gb|EFB70682.1| tRNA modification GTPase TrmE [Providencia rustigianii DSM 4541] Length = 454 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 168/454 (37%), Positives = 249/454 (54%), Gaps = 23/454 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + I+R+SGP V E + K P PR A F +DG +LD+G+ Sbjct: 5 DTIVAQATPPGRGGVGILRVSGPKAALVAETVLGKL-PKPRYAEYLPFRDVDGSVLDQGI 63 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 I FP P SFTGED E HGG +++ +L + + +R+ANPGEFS RAF N K+DL Sbjct: 64 AIYFPGPNSFTGEDVLELQGHGGPVILDLLLRRILTIGAIRIANPGEFSERAFLNDKLDL 123 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E R +M + G SS Q ++ LTH+R ++EA +DF +EE + Sbjct: 124 AQAEAIADLIDASSEQAARSAMNSLQGAFSSHIHQLVEALTHLRIYVEAAIDFPDEE-ID 182 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S ++ + + +D+ SQ + G ++R G K+VI G NAGKSSL NALA ++ A Sbjct: 183 FLSDGKIEAKLNEVVDDLEQVRSQARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAA 242 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+E AD +L + Sbjct: 243 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWKEIEQADRVLFM 302 Query: 306 -----------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTE-----EYDHL-ISSFTG 348 +EI + P+ + I K+D E Y + +S+ Sbjct: 303 VDSTTTDATEPQEIWPEFMARLPETLPVTVIRNKADKTGESIEFVADVRYPLIRLSAREE 362 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIA 406 +G++ L + +K + + +RHL L+ +L L G +++A Sbjct: 363 KGIDLLRDHLKETMGFS-GNTEGGFLARRRHLQALNNAATHLAQGYDQLVNARSG-ELLA 420 Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E LRLA + L +ITG + LL IFS FCIGK Sbjct: 421 EELRLAQLELSEITGEFTSDDLLGRIFSSFCIGK 454 >gi|120613418|ref|YP_973096.1| tRNA modification GTPase TrmE [Acidovorax citrulli AAC00-1] gi|205829049|sp|A1TWI4|MNME_ACIAC RecName: Full=tRNA modification GTPase mnmE gi|120591882|gb|ABM35322.1| tRNA modification GTPase trmE [Acidovorax citrulli AAC00-1] Length = 482 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 165/486 (33%), Positives = 247/486 (50%), Gaps = 51/486 (10%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 + + I A++T A+ I+R+SG + E +C + PR+A+ F G+ Sbjct: 2 LPRHTDPIAAIATAPGRGAVGIVRVSGRGIGPLVEALCGRAL-RPREATYLPFRDAGGQA 60 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEEL-------------AKMPNLRL 107 +D+GL + FP+P S+TGED E HGG V+ +L ++P LRL Sbjct: 61 IDQGLALYFPAPHSYTGEDVLELQAHGGPVVLQLLLARCLQAAGEADRATGRPRLPGLRL 120 Query: 108 ANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTH 167 A PGEF+ RAF N KIDL +AE++ADLI + TE R + ++G S + D L H Sbjct: 121 ARPGEFTERAFLNDKIDLAQAEAIADLIDASTEAAARSASRSLAGAFSDEIHRLRDALVH 180 Query: 168 IRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227 +R +EA LDF EEE + + + L+ ++ + + + G ++R G K+VI G Sbjct: 181 LRMLVEATLDFPEEE-IDFLRKADAHGQLAALQRTLAEVMGRTRQGALLREGIKVVIAGQ 239 Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKE 287 NAGKSSL NALA ++AIVT I GTTRD + + +EG + + DTAG+RE+DD VE+ Sbjct: 240 PNAGKSSLLNALAGAELAIVTPIAGTTRDKVQQTIQIEGVPLHVIDTAGLRESDDEVERI 299 Query: 288 GIKRTFLEVENADLILLLKEINSKKEISF---------------PKNIDFIFIGTKSD-- 330 GI+R + E+ AD +L L ++ + + P ++ + + KSD Sbjct: 300 GIERAWQEIAAADAVLFLHDLTRAGQPDYEAADAEIAARLARMAPAHVPVVDVWNKSDRA 359 Query: 331 ------------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI-PSHK 377 S +S+ TGEGL+ L + I ++ P I + Sbjct: 360 EGSAAAGQGGVATASASGRAAAVRLSARTGEGLDGLRRVLLDIAG--WQSAPEGIYTARA 417 Query: 378 RHLYHLSQTVRYLEMASLNEKDC---GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFS 434 RHL L +L M + + C LD++AE LRLA +L ITG + LL +IFS Sbjct: 418 RHLEALRAVDMHL-MEAAAQLQCDGPALDLLAEELRLAQQALNAITGEFTSDDLLGVIFS 476 Query: 435 KFCIGK 440 FCIGK Sbjct: 477 SFCIGK 482 >gi|126668974|ref|ZP_01739913.1| tRNA modification GTPase [Marinobacter sp. ELB17] gi|126626558|gb|EAZ97216.1| tRNA modification GTPase [Marinobacter sp. ELB17] Length = 456 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 164/460 (35%), Positives = 249/460 (54%), Gaps = 24/460 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 MNH ETI A++T + + I+R+SGP + + P PR A F + Sbjct: 1 MNHPTETIAAIATAPGQAGVGIVRVSGPQATVIAHSLLGYA-PKPRYAHYGPFKDSQDEL 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+G+ + FP+P SFTGED E HGG +++ +L E+ + RLA PGEFS RAF N Sbjct: 60 IDEGIGLFFPNPYSFTGEDVFELQGHGGTVILDLLLREVCAL-GARLARPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI S +E R ++ M G S +D +TH+R ++EA +DF E Sbjct: 119 DKLDLAQAEAIADLIESSSEQAARCAVRSMQGVFSRRIETLVDAVTHLRIYVEAAIDFPE 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + + +V D+ L++ + + + + G I+R+G K+VI G NAGKSSL NALA Sbjct: 179 EE-IDFLADGKVATDLQSLRDQLQGIMLEAQQGTIMRDGMKVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVT I GTTRDVL + ++G + I DTAG+R++ D VE+ GI R + E+ AD Sbjct: 238 GREAAIVTAIEGTTRDVLREHIHIDGMPLHIIDTAGLRDSPDEVEQIGIARAWDEIRQAD 297 Query: 301 LILLLKEINSKKEIS----FPKNID-------FIFIGTKSDLYS------TYTEEYDHLI 343 ILL+ + + S +P ID I K DL + + +I Sbjct: 298 RILLMVDATTTDRTSPHEIWPDFIDQLPAAAPITVIRNKVDLSGESVGLIELSPQQAPVI 357 Query: 344 --SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401 ++ + GL+ L + +K + + +RHL L + +L + G Sbjct: 358 RLAAKSSAGLDALRDHLKQCMGFA-STTEGGFLARRRHLDALERAAEFLVQGQTQLEGYG 416 Query: 402 L-DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE+LR A +LG+ITG + + LL IF FCIGK Sbjct: 417 AGELLAEDLRAAQSALGEITGQITPDDLLGKIFGSFCIGK 456 >gi|89902988|ref|YP_525459.1| tRNA modification GTPase TrmE [Rhodoferax ferrireducens T118] gi|122478002|sp|Q21QM5|MNME_RHOFD RecName: Full=tRNA modification GTPase mnmE gi|89347725|gb|ABD71928.1| tRNA modification GTPase trmE [Rhodoferax ferrireducens T118] Length = 469 Score = 258 bits (659), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 165/472 (34%), Positives = 255/472 (54%), Gaps = 37/472 (7%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 + ++ I A++T A+ I+R+SG S + + + ++ R+A+ F Sbjct: 3 LPRHQDPIVAIATAPGRGAVGIVRVSGKSIGSLMQALLGRQL-RAREATYLPFLDRSQLA 61 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGIL----------EELAKMP---NLRL 107 +D+G+ + FP+P SFTGED E HGG V+ +L + +++MP LR Sbjct: 62 IDQGIALYFPAPHSFTGEDVLELQAHGGPVVLQLLLARCLEAGAELDPVSQMPRLVGLRP 121 Query: 108 ANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTH 167 A PGEFS RAF N KIDL +AE++ADLI + TE R + +SG S + L H Sbjct: 122 ALPGEFSERAFLNDKIDLAQAEAIADLIDASTEAAARSASRSLSGAFSQEIHILREALIH 181 Query: 168 IRSFIEADLDFSEEED--VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVIL 225 +R +EA LDF EEE ++ ++ L+D L+ + S + + G ++R G +VI Sbjct: 182 LRMLVEATLDFPEEEIDFLRQADARGQLSD---LQQSLQSVLQKASQGALLREGITVVIA 238 Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVE 285 G N GKSSL NALA ++AIVT I GTTRD + + +EG V + DTAG+R++DD++E Sbjct: 239 GQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVQQTIQIEGVPVHVIDTAGLRDSDDVIE 298 Query: 286 KEGIKRTFLEVENADLILLLKEINSKKEISF---------------PKNIDFIFIGTKSD 330 K GI RT+ +E AD +L L ++ K + ++ I I K+D Sbjct: 299 KIGIARTWDVIEAADAVLFLHDLTRKNATDYIAADAVIAEAIAGKLSASVPVIEIWNKAD 358 Query: 331 LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL 390 + ++ +S+ TG GL+ L K+ ++ + K + + +RH+ L +T +L Sbjct: 359 VIDRPCQQAGLQLSAKTGAGLDTLRRKLLELVGWQSKPEGVYM-ARERHVQALHRTAAHL 417 Query: 391 EMAS--LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A L K LD++AE LRLA +LG+ITG + LL +IFS+FCIGK Sbjct: 418 MTAGFHLEAKAQALDLLAEELRLAQNALGEITGDFSSDDLLGVIFSRFCIGK 469 >gi|160877621|ref|YP_001556937.1| tRNA modification GTPase TrmE [Shewanella baltica OS195] gi|189036207|sp|A9KX19|MNME_SHEB9 RecName: Full=tRNA modification GTPase mnmE gi|160863143|gb|ABX51677.1| tRNA modification GTPase TrmE [Shewanella baltica OS195] gi|315269820|gb|ADT96673.1| tRNA modification GTPase TrmE [Shewanella baltica OS678] Length = 453 Score = 258 bits (659), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 162/453 (35%), Positives = 253/453 (55%), Gaps = 21/453 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + IIR+SG V + P R A F G+++D+G+ Sbjct: 4 DTIVAQATAPGRGGVGIIRISGDKASDVAMAVLGHL-PKTRYADYCDFKSASGQVIDQGI 62 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + F P SFTGED E HGG V++ +++ + ++ +R+A PGEFS +AF N K+DL Sbjct: 63 ALFFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVMEVGGIRIAKPGEFSEQAFMNDKLDL 122 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E + +++ + GE S + +D++T++R ++EA +DF +EE V Sbjct: 123 TQAEAIADLIDATSEQAAKSALQSLQGEFSKEVHELVDQVTNLRLYVEAAIDFPDEE-VD 181 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S ++ N + + + + + K G IIR G K+VI G NAGKSSL NALA K+ A Sbjct: 182 FLSDGKIANALYKIIDKLDLVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKESA 241 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVT+I GTTRDVL + L+G + I DTAG+R+T+D VE+ GI+R + E+ +AD +L + Sbjct: 242 IVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTNDTVEQIGIERAWNEINSADRVLFM 301 Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYS---TYTEEYD---HLISSFTG 348 + + + P N+ I K+DL TEE + IS+ TG Sbjct: 302 VDGTTTAAVDPHTIWPDFVDRLPSNLGVTVIRNKADLTGEDLMMTEEQGYSVYRISAKTG 361 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407 G+EEL +KS++ + L + +RHL L +L++ E +++AE Sbjct: 362 LGVEELKQHLKSLMGYQ-SNLEGGFIARRRHLEALELAAGHLQLGKEQLEVYLAGELLAE 420 Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LR+ ++L +ITG + LL IFS FCIGK Sbjct: 421 ELRMCQLALSEITGRFTSDDLLGKIFSSFCIGK 453 >gi|323496919|ref|ZP_08101947.1| tRNA modification GTPase TrmE [Vibrio sinaloensis DSM 21326] gi|323317993|gb|EGA70976.1| tRNA modification GTPase TrmE [Vibrio sinaloensis DSM 21326] Length = 453 Score = 258 bits (659), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 164/453 (36%), Positives = 247/453 (54%), Gaps = 21/453 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + IIR+SGP V + K PR A F DG +D+G+ Sbjct: 4 DTIVAQATAPGRGGVGIIRVSGPLAATVALEVTGKTL-RPRYAEYLPFTATDGTQIDQGI 62 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + FP+P SFTGED E HGG V++ +++ + +P +R A PGEFS RAF N K+DL Sbjct: 63 ALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILDIPGIRTARPGEFSERAFLNDKLDL 122 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E + +++ + G S ++ L H+R ++EA +DF EEE + Sbjct: 123 AQAEAIADLIDASSEEAAKSALQSLQGAFSQRIHTLVESLIHLRIYVEAAIDFPEEE-ID 181 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 + +V D+ + +++++ + G I+R G K+VI G NAGKSSL NAL+ K+ A Sbjct: 182 FLADGKVSADLQAIIDNLAAVRQEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKESA 241 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTDI GTTRDVL + ++G + I DTAG+R+ D VEK GI+R + E+ AD +L + Sbjct: 242 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVEKIGIERAWDEIAQADRVLFM 301 Query: 306 -----KEINSKKEI------SFPKNIDFIFIGTKS-----DLYSTYTEEYDHL-ISSFTG 348 + KEI P NI I K+ DL + + + +S+ TG Sbjct: 302 VDGTTTDATDPKEIWPDFVDRLPDNIGMTVIRNKADQTNEDLGICHVNDPTLIRLSAKTG 361 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407 +G+E L N +K + + +RHL L + +L++ E +I+AE Sbjct: 362 QGVESLRNHLKECMGFAGGN-EGGFMARRRHLEALERAAEHLDIGQQQLEGYMAGEILAE 420 Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LR+A L +ITG + LL IFS FCIGK Sbjct: 421 ELRIAQQHLSEITGEFSSDDLLGRIFSSFCIGK 453 >gi|260774545|ref|ZP_05883458.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio metschnikovii CIP 69.14] gi|260610451|gb|EEX35657.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio metschnikovii CIP 69.14] Length = 453 Score = 258 bits (659), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 166/457 (36%), Positives = 252/457 (55%), Gaps = 29/457 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF---PRKASLRYFFGLDGRILD 62 +TI A +T + IIR+SGP F+ K+ PR A F DG LD Sbjct: 4 DTIVAQATAPGRGGVGIIRVSGPQA----AFVAKQVTGMDLKPRYAKYLPFKDADGAELD 59 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 +G+ + FP+P SFTGED E HGG V++ +++ + +P LR A PGEFS RAF N K Sbjct: 60 QGIALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILAIPGLRPARPGEFSERAFLNDK 119 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 +DL +AE++ADLI + +E + +++ + G+ S ++ L H+R ++EA +DF EEE Sbjct: 120 LDLTQAEAIADLIDASSEQAAKSALQSLQGQFSKRINTLVESLIHLRIYVEAAIDFPEEE 179 Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 + + +V D+ + +++++ + G I+R G K+VI G NAGKSSL NAL+ K Sbjct: 180 -IDFLADGKVSADLQAIIDNLAAVRQEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGK 238 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 D AIVTDI GTTRDVL + ++G + I DTAG+R+ D VEK GI+R + E++ AD + Sbjct: 239 DSAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVEKIGIERAWEEIKQADRV 298 Query: 303 LLLKEINSKKEISFPKNI--DFI----------FIGTKSD-----LYSTYTEEYDHL-IS 344 L + + + E + PK+I DF+ I K D L + + + +S Sbjct: 299 LFMVD-GTTTEATDPKDIWPDFVDRLPDQMGMTVIRNKVDQTGETLGVCHASQPTLIRLS 357 Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLD 403 + TG+G+E L +K + + + +RHL L + +L + E + Sbjct: 358 AKTGQGVEALRTHLKECMGFTGNQ-EGGFMARRRHLDALERAAEHLAIGQQQLEGYMAGE 416 Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 I+AE LR+A L +ITG + LL IFS FCIGK Sbjct: 417 ILAEELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 453 >gi|160872053|ref|ZP_02062185.1| tRNA modification GTPase TrmE [Rickettsiella grylli] gi|159120852|gb|EDP46190.1| tRNA modification GTPase TrmE [Rickettsiella grylli] Length = 462 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 170/455 (37%), Positives = 253/455 (55%), Gaps = 24/455 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 ETI A++T I++IR+SG + ++ + ++ P R A F DG ++D+GL Sbjct: 12 ETIVALATPQGRGGIAVIRISGSTIKRIANQLLRRA-PRKRYAEYCSFLAKDGSLIDQGL 70 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + FP+P SFTGED E HGG VV+ +L+ + ++ RLA PGEF+ RAF N K+DL Sbjct: 71 ALYFPAPHSFTGEDVLELQCHGGPIVVDCLLKRVLQL-GARLARPGEFTERAFLNAKLDL 129 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 ++AE++ADLI++E+E R +M + G+ S Q D + +R ++EA +DFS+E ++ Sbjct: 130 VQAEAIADLINAESEQAARAAMRSLQGDFSLRINQIRDSIIELRMWLEASIDFSDE-NID 188 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 +VL + + DI + + K G +++ G + I+G NAGKSSL N L+ K+ + Sbjct: 189 CLKDGDVLTRLNSILTDIQNIKNLAKQGTLLQEGINLAIVGPPNAGKSSLLNRLSLKEAS 248 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVT GTTRDV+ + +EG L+ I DTAG+R T D +EKEGIKRT E+ A+LIL + Sbjct: 249 IVTSFAGTTRDVIREKIQIEGLLIHIVDTAGLRITIDEIEKEGIKRTLAEIAKANLILWV 308 Query: 306 KEINS---------KKEISFPKNI----DFIFIGTKSDLYSTYTEEYDHL------ISSF 346 + N+ K++ F KNI + I K DL L +S+ Sbjct: 309 VDHNTTRHEDLIFWKEQELFLKNIFLDNRILIIRNKIDLSQENARIEKELNFNVIKLSAK 368 Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL-DII 405 TGEG L N +K+ + + + +RHL LS T L A K+ ++I Sbjct: 369 TGEGFSLLYNYLKN-YAGYTNSSESNFSARRRHLDALSHTQMTLNKALKKIKENTFSELI 427 Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 AE+L +A LG+ITG LL IFS FCIGK Sbjct: 428 AEDLAMAQNFLGEITGHFTTHDLLGKIFSNFCIGK 462 >gi|213155396|ref|YP_002317441.1| tRNA modification GTPase TrmE [Acinetobacter baumannii AB0057] gi|213054556|gb|ACJ39458.1| tRNA modification GTPase TrmE [Acinetobacter baumannii AB0057] Length = 406 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 160/410 (39%), Positives = 240/410 (58%), Gaps = 22/410 (5%) Query: 48 ASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRL 107 A R F+ DG I+D+G+++ FP+P SFTGED E HGG + N +L L ++ + Sbjct: 2 AGFRKFYDTDGSIMDEGIVLCFPNPHSFTGEDVVELQGHGGPVIQNALLGRLFELGAIA- 60 Query: 108 ANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTH 167 A GEFS RAFENGK+DL++AE++ADLI + ++ R ++ + G S+ ++KL H Sbjct: 61 AKAGEFSMRAFENGKMDLVQAEAIADLIDATSQAAARSAVRSLQGAFSTKINTVLEKLIH 120 Query: 168 IRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227 +R +EA +DF EEE + + ++L + ++ + + + + G+++R G ++VI G Sbjct: 121 LRLHVEAAIDFPEEE-IDFLADGKILALLEDVQQSVHAVQTSARQGQLLREGLQVVIAGK 179 Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKE 287 NAGKSSL NALA + AIVTDI GTTRDVL + L G + ++DTAG+RET DIVEKE Sbjct: 180 PNAGKSSLLNALAGVERAIVTDIAGTTRDVLHEKISLNGLPITLTDTAGLRETGDIVEKE 239 Query: 288 GIKRTFLEVENADLILLLKEINSK------KEISFPKNID---FIFIGTKSDLYSTYTEE 338 GI+R E+E ADL+LL+ ++N + F ++I+ + IG K DL E Sbjct: 240 GIRRAIKEIEQADLLLLVYDLNQGDDPLKLAQEYFSEHIEPRRLMLIGNKCDLTGQSAEI 299 Query: 339 YD-----HLISSFTGE-GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM 392 D H+ S E G++ L++ I + F + + RHL + +T YL Sbjct: 300 SDYQGFRHITVSAKQEMGVQGLVDAITA--HAGFHPEEDTFIARTRHLDAMKRTQLYLAE 357 Query: 393 A--SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A L + G +++AE+LRLA +LG+ITG + LL IF FCIGK Sbjct: 358 AREQLVIFNAG-ELVAESLRLAQNALGEITGDFSADDLLGKIFGSFCIGK 406 >gi|229515956|ref|ZP_04405413.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae TMA 21] gi|229347056|gb|EEO12018.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae TMA 21] Length = 453 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 162/454 (35%), Positives = 249/454 (54%), Gaps = 23/454 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + IIR+SGP V + + + PR A F DG+ LD+G+ Sbjct: 4 DTIVAQATALGRGGVGIIRVSGPLAAHVAQTVTGRTL-RPRYAEYLPFTDEDGQQLDQGI 62 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + FP+P SFTGED E HGG V++ ++ + ++ +R A PGEFS RAF N K+DL Sbjct: 63 ALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIKGVRPARPGEFSERAFLNDKMDL 122 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E + +++ + GE S ++ L H+R ++EA +DF EEE + Sbjct: 123 TQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPEEE-ID 181 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 + +V D+ + +++++ + G I+R G K+VI G NAGKSSL NAL+ K+ A Sbjct: 182 FLADGKVSADLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKESA 241 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTDI GTTRDVL + ++G + I DTAG+R+ D VEK GI+R + E+ AD +L + Sbjct: 242 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDAVEKIGIERAWEEIRQADRVLFM 301 Query: 306 -----KEINSKKEI------SFPKNIDFIFIGTKSDLYSTYTEEYDHL-------ISSFT 347 E ++I P+NI I K+D + E H+ +S+ T Sbjct: 302 VDGTTTEATDPQDIWPDFVDKLPENIGITVIRNKAD-QTGEPLEICHVNQPTLIRLSAKT 360 Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIA 406 G+G++ L +K + + + +RHL L + +L + E +I+A Sbjct: 361 GQGVDALRQHLKECMGFSGNQ-EGGFMARRRHLDALERAAEHLAIGQQQLEGYMAGEILA 419 Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E LR+A L +ITG + LL IFS FCIGK Sbjct: 420 EELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 453 >gi|304412701|ref|ZP_07394304.1| tRNA modification GTPase TrmE [Shewanella baltica OS183] gi|304348911|gb|EFM13326.1| tRNA modification GTPase TrmE [Shewanella baltica OS183] Length = 453 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 162/453 (35%), Positives = 253/453 (55%), Gaps = 21/453 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + IIR+SG V + P R A F G+++D+G+ Sbjct: 4 DTIVAQATAPGRGGVGIIRISGDKASDVAMAVLGHL-PKTRYADYCDFKSASGQVIDQGI 62 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + F P SFTGED E HGG V++ +++ + ++ +R+A PGEFS +AF N K+DL Sbjct: 63 ALFFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVMEVGGIRIAKPGEFSEQAFMNDKLDL 122 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E + +++ + GE S + +D++T++R ++EA +DF +EE V Sbjct: 123 TQAEAIADLIDATSEQAAKSALQSLQGEFSKEVHELVDQVTNLRLYVEAAIDFPDEE-VD 181 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S ++ N + + + + + K G IIR G K+VI G NAGKSSL NALA K+ A Sbjct: 182 FLSDGKIANALYKIIDKLDLVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKESA 241 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVT+I GTTRDVL + L+G + I DTAG+R+T D VE+ GI+R + E+ +AD +L + Sbjct: 242 IVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTTDTVEQIGIERAWNEINSADRVLFM 301 Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYS---TYTEEYD---HLISSFTG 348 + + ++ P N+ I K+DL TEE + IS+ TG Sbjct: 302 VDGTTTADVDPHTIWPDFVDRLPSNLGVTVIRNKADLTGEDLMMTEEQGYSVYRISAKTG 361 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407 G+EEL +KS++ + L + +RHL L +L++ E +++AE Sbjct: 362 LGVEELKQHLKSLMGYQ-SNLEGGFIARRRHLEALELAAGHLQLGKEQLEVYLAGELLAE 420 Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LR+ ++L +ITG + LL IFS FCIGK Sbjct: 421 ELRMCQLALSEITGRFTSDDLLGKIFSSFCIGK 453 >gi|205829067|sp|A1WDB4|MNME_ACISJ RecName: Full=tRNA modification GTPase mnmE Length = 466 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 167/468 (35%), Positives = 246/468 (52%), Gaps = 31/468 (6%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 + + I A++T A+ I+R+SG + + +C + PR+A+ F G+ Sbjct: 2 LPRHSDPIVAIATAPGRGAVGIVRVSGKQIGALVQALCGRALK-PREATYLPFRDAAGQA 60 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAK--MPNLRLANPGEFSR 115 +D+GL + FP+P S+TGED E HGG V+ +L E A+ +P LRLA PGEF+ Sbjct: 61 IDQGLALYFPAPHSYTGEDVLELQAHGGPVVLQLLLARCLEAAQGLLPRLRLAEPGEFTE 120 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF N KIDL +AE++ADLI + TE R + +SG+ S D L H+R +EA Sbjct: 121 RAFLNDKIDLAQAEAIADLIDASTEAAARGASRSLSGDFSREIHTLRDALVHLRMLVEAT 180 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 LDF EEE + + + LK ++ + + G ++R G K+VI G NAGKSSL Sbjct: 181 LDFPEEE-IDFLRKADASGQLSNLKRSLARVMQRASQGALLREGIKVVIAGQPNAGKSSL 239 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 NALA ++AIVT I GTTRD + + +EG + + DTAG+RE+DD VE+ GI R + E Sbjct: 240 LNALAGAELAIVTPIAGTTRDKVQQTIQIEGVPLHVIDTAGLRESDDEVERIGIARAWDE 299 Query: 296 VENADLILLLKEINSKKEISF---------------PKNIDFIFIGTKSDLYSTYT---- 336 + AD +L L ++ + P + + + K+D Sbjct: 300 IAGADAVLFLHDLTRWGSAQYQDDDAAIAHTLSNRLPAGVPVVDVWNKADAAPQAAAPAR 359 Query: 337 --EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMA 393 E L+S+ TG+GL+ L ++ I + I + RH+ L +L E A Sbjct: 360 EGESQAVLLSARTGQGLDTLRRQLLQIAGWQSAAEGVYI-ARARHIEALRAVDAHLMEAA 418 Query: 394 SLNEKDC-GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + E D LD++AE LRLA +L ITG + LL +IFS FCIGK Sbjct: 419 AQLESDGPALDLLAEELRLAQNALNTITGEFTSDDLLGVIFSSFCIGK 466 >gi|229524906|ref|ZP_04414311.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae bv. albensis VL426] gi|229338487|gb|EEO03504.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae bv. albensis VL426] Length = 453 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 161/453 (35%), Positives = 249/453 (54%), Gaps = 21/453 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + IIR+SGP V + + + PR A F DG+ LD+G+ Sbjct: 4 DTIVAQATAPGRGGVGIIRVSGPLAAHVAQTVTGRTL-RPRYAEYSPFTDEDGQQLDQGI 62 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + FP+P SFTGED E HGG V++ ++ + ++ +R A PGEFS RAF N K+DL Sbjct: 63 ALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIKGVRPARPGEFSERAFLNDKMDL 122 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E + +++ + GE S ++ L H+R ++EA +DF EEE + Sbjct: 123 TQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPEEE-ID 181 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 + +V D+ + +++++ + G I+R G K+VI G NAGKSSL NAL+ K+ A Sbjct: 182 FLADGKVSADLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKESA 241 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTDI GTTRDVL + ++G + I DTAG+R+ D VEK GI+R + E+ AD +L + Sbjct: 242 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDAVEKIGIERAWEEIRQADRVLFM 301 Query: 306 -----KEINSKKEI------SFPKNIDFIFIGTKSD-----LYSTYTEEYDHL-ISSFTG 348 E ++I P+NI I K+D L + + + +S+ TG Sbjct: 302 VDGTTTEATDPQDIWPDFVDKLPENIGITVIRNKADQTGESLGICHVNQPTLIRLSAKTG 361 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407 +G++ L +K + + + +RHL L + +L + E +I+AE Sbjct: 362 QGVDALRQHLKECMGFSGSQ-EGGFMARRRHLDALERAAEHLAIGQQQLEGYMAGEILAE 420 Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LR+A L +ITG + LL IFS FCIGK Sbjct: 421 ELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 453 >gi|237654729|ref|YP_002891043.1| tRNA modification GTPase TrmE [Thauera sp. MZ1T] gi|237625976|gb|ACR02666.1| tRNA modification GTPase TrmE [Thauera sp. MZ1T] Length = 448 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 162/445 (36%), Positives = 245/445 (55%), Gaps = 16/445 (3%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A++T I ++R+SG +C + P PR A F R +D+G+ Sbjct: 10 DTIAAIATAPGRGGIGVVRVSGAGLGAFALALCGRT-PQPRIAHFTRFLDEHERPIDEGI 68 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 L+ F +P SFTGED E HGG V+ +LE ++ RLA PGEF+RRAF NGK+DL Sbjct: 69 LLYFAAPASFTGEDVLELQGHGGPVVMQMLLERCLQL-GARLAEPGEFTRRAFLNGKLDL 127 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE +ADLI + T R ++ +SG+ S + +D L +R +EA LDF EEE + Sbjct: 128 AQAEGVADLIEASTAAAARSAVRSLSGQFSEEVHRIVDALIDLRMLVEATLDFPEEE-ID 186 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 + + ++ + + + + G ++R+G +V++G N GKSSL N LA ++ A Sbjct: 187 FLERARAMPRLESIREALEGVLDRARQGALLRSGLDVVLVGAPNVGKSSLLNQLAGEERA 246 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTDI GTTRD L + +EG + I DTAG+RET+D VE+ GI+RT+ E+ AD+IL L Sbjct: 247 IVTDIAGTTRDALRETIQVEGIPLHIIDTAGLRETEDRVERIGIERTWREIARADVILHL 306 Query: 306 KEINSKKEI----SFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFTGEGLEELI 355 E E P+ ++ I + K DL + +S+ +GEG+ EL+ Sbjct: 307 VEAGVAAEGDLDERLPQGVERIMVANKIDLAGLPAGRVEAGGRVRLQVSARSGEGV-ELV 365 Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVS 415 + ++ I + +RHL L + +R++E A + L++ AE LRLA Sbjct: 366 RQELLRIAGWHAHGEDVILARERHLLALREALRHVEAA--GTQLGALELFAEELRLAQEE 423 Query: 416 LGKITGCVDVEQLLDIIFSKFCIGK 440 LG ITG + LL +IF++FCIGK Sbjct: 424 LGTITGEFSADDLLGVIFARFCIGK 448 >gi|229520177|ref|ZP_04409604.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae TM 11079-80] gi|229342771|gb|EEO07762.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae TM 11079-80] Length = 453 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 161/453 (35%), Positives = 249/453 (54%), Gaps = 21/453 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + IIR+SGP V + + + PR A F DG+ LD+G+ Sbjct: 4 DTIVAQATAPGRGGVGIIRVSGPLAAHVAQTVTGRTL-RPRYAEYLPFTDEDGQQLDQGI 62 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + FP+P SFTGED E HGG V++ ++ + ++ +R A PGEFS RAF N K+DL Sbjct: 63 ALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIKGVRPARPGEFSERAFLNDKMDL 122 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E + +++ + GE S ++ L H+R ++EA +DF EEE + Sbjct: 123 TQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPEEE-ID 181 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 + +V D+ + +++++ + G I+R G K+VI G NAGKSSL NAL+ K+ A Sbjct: 182 FLADGKVSTDLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKESA 241 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTDI GTTRDVL + ++G + I DTAG+R+ D VEK GI+R + E+ AD +L + Sbjct: 242 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDAVEKIGIERAWEEIRQADRVLFM 301 Query: 306 -----KEINSKKEI------SFPKNIDFIFIGTKSD-----LYSTYTEEYDHL-ISSFTG 348 E ++I P+NI I K+D L + + + +S+ TG Sbjct: 302 VDGTTTEATDPQDIWPDFVDKLPENIGITVIRNKADQTGEPLGICHVNQPTLIRLSAKTG 361 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407 +G++ L +K + + + +RHL L + +L + E +I+AE Sbjct: 362 QGVDALRQHLKECMGFSGNQ-EGGFMARRRHLDALERAAEHLAIGQQQLEGYMAGEILAE 420 Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LR+A L +ITG + LL IFS FCIGK Sbjct: 421 ELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 453 >gi|104784446|ref|YP_610944.1| tRNA modification GTPase TrmE [Pseudomonas entomophila L48] gi|122401168|sp|Q1I2H5|MNME_PSEE4 RecName: Full=tRNA modification GTPase mnmE gi|95113433|emb|CAK18161.1| tRNA modification GTPase [Pseudomonas entomophila L48] Length = 456 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 168/462 (36%), Positives = 256/462 (55%), Gaps = 28/462 (6%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 MN +ETI A++T + I+RLSGP Q + I + PR A F DG + Sbjct: 1 MNTVRETIAAIATAQGRGGVGIVRLSGPLASQAGQAITGRTLT-PRHAHYGPFRDADGLV 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG V++ +L+ ++ RLA PGEFS RAF N Sbjct: 60 LDEGIALFFPGPNSFTGEDVLELQGHGGPVVMDMLLQRCLQL-GCRLARPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + + R ++ + G S + L +R ++EA +DF E Sbjct: 119 DKLDLAQAEAIADLIEASSTQAARNALRSLQGAFSKRVHGLTEALIALRIYVEAAIDFPE 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + + VL + +++++S+ + G ++R+G +VI G NAGKSSL N LA Sbjct: 179 EE-IDFLADGHVLRMLDDVRSELSTVQREAGQGALLRDGMTVVIAGRPNAGKSSLLNQLA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + ++G + + DTAG+R+TDD VEK G++R + AD Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTDDHVEKIGVERALKAIGEAD 297 Query: 301 LILLLKEINSKKEIS-----FPKNID-------FIFIGTKSDLYSTYT--EEYD--HLIS 344 +LL+ + ++ E S +P+ +D I K+DL + E+ D H+ Sbjct: 298 RVLLVVD-STAPEASDPFALWPEFLDQRPDVAKVTLIRNKADLSGEHVGMEQSDDGHVTI 356 Query: 345 SFTGE----GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEK 398 + + GL+ L + +K+ + + + S + +RHL L Q +LE A L Sbjct: 357 TLSAREDDMGLDLLRDHLKACMGYE-QTAESSFSARRRHLEALRQASAHLEHGRAQLTLA 415 Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G +++AE+LR A +LG+ITG + LL IFS FCIGK Sbjct: 416 GAG-ELLAEDLRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 456 >gi|121596419|ref|YP_988315.1| tRNA modification GTPase TrmE [Acidovorax sp. JS42] gi|120608499|gb|ABM44239.1| tRNA modification GTPase trmE [Acidovorax sp. JS42] Length = 486 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 167/468 (35%), Positives = 246/468 (52%), Gaps = 31/468 (6%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 + + I A++T A+ I+R+SG + + +C + PR+A+ F G+ Sbjct: 22 LPRHSDPIVAIATAPGRGAVGIVRVSGKQIGALVQALCGRALK-PREATYLPFRDAAGQA 80 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAK--MPNLRLANPGEFSR 115 +D+GL + FP+P S+TGED E HGG V+ +L E A+ +P LRLA PGEF+ Sbjct: 81 IDQGLALYFPAPHSYTGEDVLELQAHGGPVVLQLLLARCLEAAQGLLPRLRLAEPGEFTE 140 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF N KIDL +AE++ADLI + TE R + +SG+ S D L H+R +EA Sbjct: 141 RAFLNDKIDLAQAEAIADLIDASTEAAARGASRSLSGDFSREIHTLRDALVHLRMLVEAT 200 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 LDF EEE + + + LK ++ + + G ++R G K+VI G NAGKSSL Sbjct: 201 LDFPEEE-IDFLRKADASGQLSNLKRSLARVMQRASQGALLREGIKVVIAGQPNAGKSSL 259 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 NALA ++AIVT I GTTRD + + +EG + + DTAG+RE+DD VE+ GI R + E Sbjct: 260 LNALAGAELAIVTPIAGTTRDKVQQTIQIEGVPLHVIDTAGLRESDDEVERIGIARAWDE 319 Query: 296 VENADLILLLKEINSKKEISF---------------PKNIDFIFIGTKSDLYSTYT---- 336 + AD +L L ++ + P + + + K+D Sbjct: 320 IAGADAVLFLHDLTRWGSAQYQDDDAAIAHTLSNRLPAGVPVVDVWNKADAAPQAAAPAR 379 Query: 337 --EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMA 393 E L+S+ TG+GL+ L ++ I + I + RH+ L +L E A Sbjct: 380 EGESQAVLLSARTGQGLDTLRRQLLQIAGWQSAAEGVYI-ARARHIEALRAVDAHLMEAA 438 Query: 394 SLNEKDC-GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + E D LD++AE LRLA +L ITG + LL +IFS FCIGK Sbjct: 439 AQLESDGPALDLLAEELRLAQNALNTITGEFTSDDLLGVIFSSFCIGK 486 >gi|323493772|ref|ZP_08098890.1| tRNA modification GTPase TrmE [Vibrio brasiliensis LMG 20546] gi|323311906|gb|EGA65052.1| tRNA modification GTPase TrmE [Vibrio brasiliensis LMG 20546] Length = 453 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 164/453 (36%), Positives = 248/453 (54%), Gaps = 21/453 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + IIR+SGP +V K+ PR A F DG LD+G+ Sbjct: 4 DTIVAQATAPGRGGVGIIRVSGPLASKVA-LEVTGKELRPRYAEYLPFTAEDGSQLDQGI 62 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + FP+P SFTGED EF HGG V++ +++ + K+ +R A PGEFS RAF N K+DL Sbjct: 63 ALFFPNPHSFTGEDVVEFQGHGGPVVMDMLIKRILKISGIRTARPGEFSERAFLNDKLDL 122 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E + +++ + G S ++ L H+R ++EA +DF EEE + Sbjct: 123 AQAEAIADLIDASSEEAAKSALQSLQGAFSGRINTLVESLIHLRIYVEAAIDFPEEE-ID 181 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 + +V D+ + +++++ + G I+R G K+VI G NAGKSSL NAL+ K+ A Sbjct: 182 FLADGKVAADLQTIIDNLAAVRKEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKESA 241 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTDI GTTRDVL + ++G + I DTAG+R+ D VEK GI+R + E+ AD +L + Sbjct: 242 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVEKIGIERAWEEISQADRVLFM 301 Query: 306 -----KEINSKKEI------SFPKNIDFIFIGTKS-----DLYSTYTEEYDHL-ISSFTG 348 + K+I P+NI I K+ DL + + + +S+ TG Sbjct: 302 VDGTTTDATDPKDIWPDFVDRLPENIGMTVIRNKADQTGEDLGICHVNDPTLIRLSAKTG 361 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407 +G+E L +K + + +RHL L + +LE+ E +I+AE Sbjct: 362 DGVEALRTHLKECMGFAGGN-EGGFMARRRHLEALERAAEHLEIGQQQLEGYMAGEILAE 420 Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LR+ L +ITG + LL IFS FCIGK Sbjct: 421 ELRITQQHLSEITGEFSSDDLLGRIFSSFCIGK 453 >gi|205422232|sp|Q12HM9|MNME_SHEDO RecName: Full=tRNA modification GTPase mnmE Length = 453 Score = 257 bits (657), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 162/453 (35%), Positives = 252/453 (55%), Gaps = 21/453 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + IIR+SG V + K P R A F D R++D+G+ Sbjct: 4 DTIVAQATAPGRGGVGIIRISGDLATNVAMAVLGKV-PKTRYADYCDFKDADDRVIDQGI 62 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + F P SFTGED E HGG V++ +++ + ++ +R+A PGEFS +AF N K+DL Sbjct: 63 ALFFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVMQVSGVRIAKPGEFSEQAFLNDKLDL 122 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E + +++ + GE S + ++++T++R ++EA +DF +EE V Sbjct: 123 TQAEAIADLIDATSEQAAKSALQSLQGEFSKEVHELVEQVTNLRLYVEAAIDFPDEE-VD 181 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S ++ N + + + + K G IIR G K+VI G NAGKSSL NALA K+ A Sbjct: 182 FLSDGKIANALYRIIAKLDTVQDSAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKESA 241 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVT+I GTTRDVL + L+G + I DTAG+R+T D VEK GI+R + E+ AD +L + Sbjct: 242 IVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTLDTVEKIGIERAWAEIATADRVLFM 301 Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTYTEE-----YD-HLISSFTG 348 + + + P + + K+DL E+ +D + IS+ TG Sbjct: 302 VDGTTTDAVDPHDIWPDFIDRLPTRLGVTVVRNKADLTGESLEKSQEQGFDVYRISAKTG 361 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407 G+EEL +KS++ + L + +RHL L +L++ E +++AE Sbjct: 362 LGVEELKQHLKSLMGYQ-SNLEGGFIARRRHLEALELAASHLQLGKEQLEVYLAGELLAE 420 Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LR+A ++L +ITG + LL IFS FCIGK Sbjct: 421 ELRMAQMALSEITGKFTSDDLLGKIFSSFCIGK 453 >gi|91795119|ref|YP_564770.1| tRNA modification GTPase TrmE [Shewanella denitrificans OS217] gi|91717121|gb|ABE57047.1| tRNA modification GTPase trmE [Shewanella denitrificans OS217] Length = 466 Score = 257 bits (657), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 162/453 (35%), Positives = 252/453 (55%), Gaps = 21/453 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + IIR+SG V + K P R A F D R++D+G+ Sbjct: 17 DTIVAQATAPGRGGVGIIRISGDLATNVAMAVLGKV-PKTRYADYCDFKDADDRVIDQGI 75 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + F P SFTGED E HGG V++ +++ + ++ +R+A PGEFS +AF N K+DL Sbjct: 76 ALFFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVMQVSGVRIAKPGEFSEQAFLNDKLDL 135 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E + +++ + GE S + ++++T++R ++EA +DF +EE V Sbjct: 136 TQAEAIADLIDATSEQAAKSALQSLQGEFSKEVHELVEQVTNLRLYVEAAIDFPDEE-VD 194 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S ++ N + + + + K G IIR G K+VI G NAGKSSL NALA K+ A Sbjct: 195 FLSDGKIANALYRIIAKLDTVQDSAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKESA 254 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVT+I GTTRDVL + L+G + I DTAG+R+T D VEK GI+R + E+ AD +L + Sbjct: 255 IVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTLDTVEKIGIERAWAEIATADRVLFM 314 Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTYTEE-----YD-HLISSFTG 348 + + + P + + K+DL E+ +D + IS+ TG Sbjct: 315 VDGTTTDAVDPHDIWPDFIDRLPTRLGVTVVRNKADLTGESLEKSQEQGFDVYRISAKTG 374 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407 G+EEL +KS++ + L + +RHL L +L++ E +++AE Sbjct: 375 LGVEELKQHLKSLMGYQ-SNLEGGFIARRRHLEALELAASHLQLGKEQLEVYLAGELLAE 433 Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LR+A ++L +ITG + LL IFS FCIGK Sbjct: 434 ELRMAQMALSEITGKFTSDDLLGKIFSSFCIGK 466 >gi|84684647|ref|ZP_01012548.1| tRNA modification GTPase [Maritimibacter alkaliphilus HTCC2654] gi|84667626|gb|EAQ14095.1| tRNA modification GTPase [Rhodobacterales bacterium HTCC2654] Length = 423 Score = 257 bits (657), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 170/437 (38%), Positives = 252/437 (57%), Gaps = 17/437 (3%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TIFA+++ + +++IR+SGP F E + P R LR + I D+ L Sbjct: 2 DTIFALASARGKAGVAVIRVSGPDAFSAGEVLAGALPP-ARTTGLRTLRNGNDPI-DEAL 59 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 ++ F SFTGE EFH+HG AVV+ +L L+ +P LR+A PGEF+RRA EN ++DL Sbjct: 60 VLSFSEGASFTGEPVVEFHLHGSTAVVSSVLSTLSSVPGLRMAEPGEFTRRAMENERLDL 119 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 + E LADLI SETE QR+ ++ +SG L QW L + +EA +DF++EE V Sbjct: 120 AQVEGLADLIDSETEAQRKQALRVLSGALGDKTSQWRKDLVRATALLEATIDFADEE-VP 178 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S EVL+ + + + + ++ E IR+G+++ I+G NAGKS+L NALA +D A Sbjct: 179 VDVSPEVLDLVDRTLAGVRTETAGARISERIRDGFEVAIVGAPNAGKSTLLNALAGRDAA 238 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 I +++ GTTRDVL + +DL G V I DTAG+RE++D++E+ GI+R +ADL + L Sbjct: 239 ITSEVAGTTRDVLEVRMDLAGLPVTILDTAGLRESEDVIERLGIERAKARAADADLRIFL 298 Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365 ++ + P + D + G KSDL T IS TGEGL+ L+ +I S+LS + Sbjct: 299 --LSGEVLPMDPMDGDIVVQG-KSDLTGTG-------ISGKTGEGLDFLVEQITSVLSER 348 Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG--LDIIAENLRLASVSLGKITGCV 423 +I +RH LS LE A + + ++ AE L A +L + G V Sbjct: 349 ASHAGTAI--RERHRVALSMAQVALENARIEVQSGSERSELAAEELWSAIRALDALMGRV 406 Query: 424 DVEQLLDIIFSKFCIGK 440 DVE +LD IF+ FC+GK Sbjct: 407 DVEVVLDEIFASFCLGK 423 >gi|307305834|ref|ZP_07585580.1| tRNA modification GTPase TrmE [Shewanella baltica BA175] gi|306911327|gb|EFN41753.1| tRNA modification GTPase TrmE [Shewanella baltica BA175] Length = 458 Score = 257 bits (657), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 162/453 (35%), Positives = 253/453 (55%), Gaps = 21/453 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + IIR+SG V + P R A F G+++D+G+ Sbjct: 9 DTIVAQATAPGRGGVGIIRISGDKASDVAMAVLGHL-PKTRYADYCDFKSASGQVIDQGI 67 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + F P SFTGED E HGG V++ +++ + ++ +R+A PGEFS +AF N K+DL Sbjct: 68 ALFFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVMEVGGIRIAKPGEFSEQAFMNDKLDL 127 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E + +++ + GE S + +D++T++R ++EA +DF +EE V Sbjct: 128 TQAEAIADLIDATSEQAAKSALQSLQGEFSKEVHELVDQVTNLRLYVEAAIDFPDEE-VD 186 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S ++ N + + + + + K G IIR G K+VI G NAGKSSL NALA K+ A Sbjct: 187 FLSDGKIANALYKIIDKLDLVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKESA 246 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVT+I GTTRDVL + L+G + I DTAG+R+T D VE+ GI+R + E+ +AD +L + Sbjct: 247 IVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTTDTVEQIGIERAWNEINSADRVLFM 306 Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYS---TYTEEYD---HLISSFTG 348 + + ++ P N+ I K+DL TEE + IS+ TG Sbjct: 307 VDGTTTADVDPHTIWPDFVDRLPSNLGVTVIRNKADLTGEDLMMTEEQGYSVYRISAKTG 366 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407 G+EEL +KS++ + L + +RHL L +L++ E +++AE Sbjct: 367 LGVEELKQHLKSLMGYQ-SNLEGGFIARRRHLEALELAAGHLQLGKEQLEVYLAGELLAE 425 Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LR+ ++L +ITG + LL IFS FCIGK Sbjct: 426 ELRMCQLALSEITGRFTSDDLLGKIFSSFCIGK 458 >gi|15893098|ref|NP_360812.1| tRNA modification GTPase TrmE [Rickettsia conorii str. Malish 7] gi|21363014|sp|Q92GE8|MNME_RICCN RecName: Full=tRNA modification GTPase mnmE gi|15620303|gb|AAL03713.1| possible thiophene and furan oxidation protein thdF [Rickettsia conorii str. Malish 7] Length = 445 Score = 257 bits (657), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 161/456 (35%), Positives = 255/456 (55%), Gaps = 33/456 (7%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD----GRIL 61 ETIFA S+ + +++ R+SGP +V + + +K K+ L Y+ + ++ Sbjct: 2 ETIFAQSSAFGKAGVAVFRISGPKSLEVLQLLTGRKD---FKSRLMYYQQITVPETKELI 58 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121 D +++ F SP SFTGED E H HG A+ + L + +RLA GEF++RAF N Sbjct: 59 DNVMVVYFKSPGSFTGEDVVEIHTHGSKAISIMLTNALLNIAGIRLAEAGEFTKRAFLNN 118 Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181 K DL AE +ADLI++ET MQ + ++ SG+L +LY W +L + S +EA +DF + Sbjct: 119 KFDLTAAEGIADLINAETIMQHKQAIRQASGKLEALYNNWRSQLLKMLSLLEAYIDFP-D 177 Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 ED+ + EV N L N IS +++ + GE++R+G K+ I+G N GKSSL N L + Sbjct: 178 EDIPDTVLNEVTNTHTILVNTISEYLNDNRKGELLRSGLKLAIIGPPNVGKSSLLNFLMQ 237 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENAD 300 +D+AIV++I GTTRD++ LD+ GY + + DTAGIR E+ DI+E+EGIKR + AD Sbjct: 238 RDIAIVSNIAGTTRDIIEGHLDIGGYPIILQDTAGIREESSDIIEQEGIKRAINSAKTAD 297 Query: 301 LILLL-------KEIN-------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF 346 + +++ IN + I+ ID I S ++S + +S Sbjct: 298 IKIIMFDAEKLDSSINEDIINLIDENTITIINKIDLI---EASKIFSIENKYKCLRVSVK 354 Query: 347 TGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI 404 L ++ I++I N F + P+ +++RH +L Q + +L SL D L + Sbjct: 355 NNIALSSILKNIENIAENMAGFTETPY--ITNQRHRNYLQQALSHLTAFSL---DNDLVL 409 Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E++R+ + +G ITG ++VE++L IF FCIGK Sbjct: 410 ATEDIRMTARCIGAITGVINVEEILGEIFKNFCIGK 445 >gi|260595826|ref|YP_003208397.1| tRNA modification GTPase TrmE [Cronobacter turicensis z3032] gi|260215003|emb|CBA26661.1| tRNA modification GTPase mnmE [Cronobacter turicensis z3032] Length = 454 Score = 257 bits (657), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 167/463 (36%), Positives = 258/463 (55%), Gaps = 32/463 (6%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+H +TI A +T + I+R+SG V + + K P R A F DG Sbjct: 1 MSH-NDTIVAQATPPGRGGVGILRVSGQQARDVAQAVLGKL-PKARYADYLPFKDADGTA 58 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG +++ +L+ + +P +R+A PGEFS RAF N Sbjct: 59 LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGVRIAKPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + +E R ++ + G S+ ++ LTH+R F+EA +DF + Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPD 178 Query: 181 EEDVQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 EE + S ++ LN+++ D+ + ++ + G ++R G K+VI G NAGKSSL N Sbjct: 179 EE-IDFLSDGKIEAQLNEVI---GDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLN 234 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 ALA ++ AIVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+E Sbjct: 235 ALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIE 294 Query: 298 NADLILLLKEINSKKEISFPKNI--DFI----------FIGTKSDLYSTY---TEEYDH- 341 AD +L + + + + + P I DFI + K+D+ + +E H Sbjct: 295 QADRVLFMVD-GTTTDATDPAQIWPDFIARLPAKLPITVVRNKADVTGEHPGLSEVNGHS 353 Query: 342 --LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNE 397 +S+ T +G++ L + +K + + + +RHL L +L+ A L Sbjct: 354 LIRLSARTSDGVDVLRSHLKQSMGFD-TSMEGGFLARRRHLQALEDAANHLQQGKAQLLG 412 Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G +++AE LRLA +L +ITG + LL IFS FCIGK Sbjct: 413 AWAG-ELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454 >gi|91204852|ref|YP_537207.1| tRNA modification GTPase TrmE [Rickettsia bellii RML369-C] gi|122426138|sp|Q1RKJ6|MNME_RICBR RecName: Full=tRNA modification GTPase mnmE gi|91068396|gb|ABE04118.1| tRNA modification GTPase TrmE [Rickettsia bellii RML369-C] Length = 445 Score = 257 bits (657), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 163/453 (35%), Positives = 254/453 (56%), Gaps = 27/453 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL----DGRIL 61 ETIFA S+ + +++ R+SG +V + + K PR Y+ L ++ Sbjct: 2 ETIFAQSSSFGKAGVAVFRVSGTKSLEVLKLLTGKSNFKPR---FMYYQKLTSPESNDLI 58 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121 D +++ F +P SFTGED E H HG A+ + L +P +RLA GEF++RAF N Sbjct: 59 DNAMVVYFKAPNSFTGEDVVEIHTHGSKAISIMLTNALLNIPGVRLAEAGEFTKRAFLNN 118 Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181 K DL AE +ADLI++ET MQ + ++ G L LY W +L I S +EA +DF + Sbjct: 119 KFDLTAAEGIADLINAETIMQHKQAIRQAGGALEELYNSWRSQLLRIISLLEAYIDFP-D 177 Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 ED+ K+V N L N IS +++ + GE++R+G K+ I+G NAGKSSL N L + Sbjct: 178 EDIPESVLKDVTNTHKTLINTISEYLNDNRKGELLRSGLKLAIIGPPNAGKSSLLNFLMR 237 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENAD 300 +D+AIV++I GTTRD++ LD+ GY + + DTAGIR E++D++E+EGIKR + AD Sbjct: 238 RDIAIVSNIAGTTRDIIEGHLDIGGYPIILQDTAGIRGESNDVIEQEGIKRAIDSAKKAD 297 Query: 301 LILLLKEINS-----KKEISFPKNIDFIFIGTKSDLYS-----TYTEEYDHLISSFTGE- 349 + +++ + + ++I+ + + I I K DL +Y L S Sbjct: 298 IKIVMFDAETLDSAVNEDITGLIDENTIVIINKIDLIPENRIFNIENKYRCLKVSIKNNI 357 Query: 350 GLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAE 407 L ++ I+ I N F + P+ +++RH +HL Q + YL+ +L D L + E Sbjct: 358 ALPSILKNIEEIAENMAGFTETPYI--TNERHRHHLKQALVYLKDFNL---DNDLVLATE 412 Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++R+ +G ITG +DVE++L IF FCIGK Sbjct: 413 DIRMTMRRIGAITGIIDVEEILGEIFKNFCIGK 445 >gi|153002874|ref|YP_001368555.1| tRNA modification GTPase TrmE [Shewanella baltica OS185] gi|166234820|sp|A6WUK3|MNME_SHEB8 RecName: Full=tRNA modification GTPase mnmE gi|151367492|gb|ABS10492.1| tRNA modification GTPase TrmE [Shewanella baltica OS185] Length = 453 Score = 257 bits (657), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 162/453 (35%), Positives = 252/453 (55%), Gaps = 21/453 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + IIR+SG V + P R A F G+++D+G+ Sbjct: 4 DTIVAQATAPGRGGVGIIRISGDKASDVAMAVLGHL-PKTRYADYCDFKSASGQVIDQGI 62 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + F P SFTGED E HGG V++ +++ + ++ +R+A PGEFS +AF N K+DL Sbjct: 63 ALFFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVMEVGGIRIAKPGEFSEQAFMNDKLDL 122 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E + +++ + GE S + +D++T++R ++EA +DF +EE V Sbjct: 123 TQAEAIADLIDATSEQAAKSALQSLQGEFSKEVHELVDQVTNLRLYVEAAIDFPDEE-VD 181 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S ++ N + + + + + K G IIR G K+VI G NAGKSSL NALA K+ A Sbjct: 182 FLSDGKIANALYKIIDKLDLVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKESA 241 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVT+I GTTRDVL + L+G + I DTAG+R+T D VE+ GI+R + E+ +AD +L + Sbjct: 242 IVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTTDTVEQIGIERAWNEINSADRVLFM 301 Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYS---TYTEEYD---HLISSFTG 348 + + + P N+ I K+DL TEE + IS+ TG Sbjct: 302 VDGTTTAAVDPHTIWPDFVDRLPSNLGVTVIRNKADLTGEDLMMTEEQGYSVYRISAKTG 361 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407 G+EEL +KS++ + L + +RHL L +L++ E +++AE Sbjct: 362 LGVEELKQHLKSLMGYQ-SNLEGGFIARRRHLEALELAAGHLQLGKEQLEVYLAGELLAE 420 Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LR+ ++L +ITG + LL IFS FCIGK Sbjct: 421 ELRMCQLALSEITGRFTSDDLLGKIFSSFCIGK 453 >gi|330961500|gb|EGH61760.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. maculicola str. ES4326] Length = 456 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 166/461 (36%), Positives = 249/461 (54%), Gaps = 26/461 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 MN +ETI A++T + I+R+SGP + + + + P PR A F G + Sbjct: 1 MNVPRETIAAIATAQGRGGVGIVRVSGPLAGKTAQAMIGRT-PKPRYAHYGPFSDDAGEV 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG V++ +L+ ++ + RLA PGEFS RAF N Sbjct: 60 LDEGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQLGS-RLARPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + + R ++ + G S +KL +R ++EA +DF E Sbjct: 119 DKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSQRVDNLTEKLISLRIYVEAAIDFPE 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + + VL + ++ ++S+ + + G ++R+G +VI G NAGKSSL NALA Sbjct: 179 EE-IDFLADGHVLTMLDDVRLELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVT+I GTTRDVL + ++G + + DTAG+R T+D VE G++R + AD Sbjct: 238 GREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRNTEDQVEMIGVQRALKAIGEAD 297 Query: 301 LILLLKEINSKKEI-----------SFPKNIDFIFIGTKSDL----YSTYTEEYDHLISS 345 ILL+ + + + P I KSDL +T + H+ S Sbjct: 298 RILLVVDATAPEAADPFALWPEFLEQRPDPAKVTLIRNKSDLSGDHVGLFTSDDGHVTIS 357 Query: 346 FT----GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKD 399 + GEGLE L +K+ + + + S + +RHL L LE A L Sbjct: 358 LSARSGGEGLELLREHLKACMGYE-QTSESSFSARRRHLEALRHASHSLEHGRAQLTLAG 416 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G +++AE+LR A SLG+ITG + LL IFS FCIGK Sbjct: 417 AG-ELLAEDLRQAQQSLGEITGAFSSDDLLGRIFSSFCIGK 456 >gi|34581226|ref|ZP_00142706.1| possible thiophene and furan oxidation protein thdF [Rickettsia sibirica 246] gi|229587120|ref|YP_002845621.1| tRNA modification GTPase TrmE [Rickettsia africae ESF-5] gi|28262611|gb|EAA26115.1| possible thiophene and furan oxidation protein thdF [Rickettsia sibirica 246] gi|228022170|gb|ACP53878.1| tRNA modification GTPase TrmE [Rickettsia africae ESF-5] Length = 445 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 161/456 (35%), Positives = 255/456 (55%), Gaps = 33/456 (7%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD----GRIL 61 ETIFA S+ + +++ R+SGP +V + + +K K+ L Y+ + ++ Sbjct: 2 ETIFAQSSAFGKAGVAVFRISGPKSLEVLQLLTGRKD---FKSRLMYYQQITVPETKELI 58 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121 D +++ F SP SFTGED E H HG A+ + L + +RLA GEF++RAF N Sbjct: 59 DNVMVVYFKSPGSFTGEDVVEIHTHGSKAISIMLTNALLNIAGIRLAEAGEFTKRAFLNN 118 Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181 K DL AE +ADLI++ET MQ + ++ SG+L +LY W +L + S +EA +DF + Sbjct: 119 KFDLTAAEGIADLINAETIMQHKQAIRQASGKLEALYNNWRSQLLKMISLLEAYIDFP-D 177 Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 ED+ + EV N L N IS +++ + GE++R+G K+ I+G N GKSSL N L + Sbjct: 178 EDIPDTVLNEVTNTHTILVNTISEYLNDNRKGELLRSGLKLAIIGPPNVGKSSLLNFLMQ 237 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENAD 300 +D+AIV++I GTTRD++ LD+ GY + + DTAGIR E+ DI+E+EGIKR + AD Sbjct: 238 RDIAIVSNIAGTTRDIIEGHLDIGGYPIILQDTAGIREESSDIIEQEGIKRAINSAKTAD 297 Query: 301 LILLL-------KEIN-------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF 346 + +++ IN + I+ ID I S ++S + +S Sbjct: 298 IKIIMFDAEKLDSSINEDIINLIDENTITIINKIDLI---EASKIFSIENKYKCLRVSVK 354 Query: 347 TGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI 404 L ++ I++I N F + P+ +++RH +L Q + +L SL D L + Sbjct: 355 NNIALSSILKNIENIAENMAGFTETPY--ITNQRHRNYLQQALSHLTAFSL---DNDLVL 409 Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E++R+ + +G ITG ++VE++L IF FCIGK Sbjct: 410 ATEDIRMTARCIGAITGVINVEEILGEIFKNFCIGK 445 >gi|217975462|ref|YP_002360213.1| tRNA modification GTPase TrmE [Shewanella baltica OS223] gi|217500597|gb|ACK48790.1| tRNA modification GTPase TrmE [Shewanella baltica OS223] Length = 453 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 162/453 (35%), Positives = 252/453 (55%), Gaps = 21/453 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + IIR+SG V + P R A F G+++D+G+ Sbjct: 4 DTIVAQATAPGRGGVGIIRISGDKASDVAMAVLGHL-PKTRYADYCDFKSASGQVIDQGI 62 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + F P SFTGED E HGG V++ +++ + ++ +R+A PGEFS +AF N K+DL Sbjct: 63 ALFFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVMEVGGIRIAKPGEFSEQAFMNDKLDL 122 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E + +++ + GE S + +D++T++R ++EA +DF +EE V Sbjct: 123 TQAEAIADLIDATSEQAAKSALQSLQGEFSKEVHELVDQVTNLRLYVEAAIDFPDEE-VD 181 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S ++ N + + + + + K G IIR G K+VI G NAGKSSL NALA K+ A Sbjct: 182 FLSDGKIANALYKIIDKLDLVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKESA 241 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVT+I GTTRDVL + L+G + I DTAG+R+T D VE+ GI+R + E+ +AD +L + Sbjct: 242 IVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTTDTVEQIGIERAWNEINSADRVLFM 301 Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYS---TYTEEYD---HLISSFTG 348 + + + P N+ I K+DL TEE + IS+ TG Sbjct: 302 VDGTTTAAVDPHAIWPDFVDRLPSNLGVTVIRNKADLTGEDLMMTEEQGYSVYRISAKTG 361 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407 G+EEL +KS++ + L + +RHL L +L++ E +++AE Sbjct: 362 LGVEELKQHLKSLMGYQ-SNLEGGFIARRRHLEALELAAGHLQLGKEQLEVYLAGELLAE 420 Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LR+ ++L +ITG + LL IFS FCIGK Sbjct: 421 ELRMCQLALSEITGRFTSDDLLGKIFSSFCIGK 453 >gi|153821980|ref|ZP_01974647.1| tRNA modification GTPase TrmE [Vibrio cholerae B33] gi|229508290|ref|ZP_04397794.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae BX 330286] gi|229508871|ref|ZP_04398362.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae B33] gi|229517142|ref|ZP_04406588.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae RC9] gi|229606564|ref|YP_002877212.1| tRNA modification GTPase TrmE [Vibrio cholerae MJ-1236] gi|255746813|ref|ZP_05420759.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholera CIRS 101] gi|262155893|ref|ZP_06029015.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae INDRE 91/1] gi|31340537|sp|Q9KVY5|MNME_VIBCH RecName: Full=tRNA modification GTPase mnmE gi|126520519|gb|EAZ77742.1| tRNA modification GTPase TrmE [Vibrio cholerae B33] gi|229346205|gb|EEO11177.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae RC9] gi|229354146|gb|EEO19078.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae B33] gi|229354563|gb|EEO19485.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae BX 330286] gi|229369219|gb|ACQ59642.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae MJ-1236] gi|255735570|gb|EET90969.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholera CIRS 101] gi|262030345|gb|EEY48987.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae INDRE 91/1] Length = 453 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 161/453 (35%), Positives = 249/453 (54%), Gaps = 21/453 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + IIR+SGP V + + + PR A F DG+ LD+G+ Sbjct: 4 DTIVAQATAPGRGGVGIIRVSGPLAAHVAQTVTGRTL-RPRYAEYLPFTDEDGQQLDQGI 62 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + FP+P SFTGED E HGG V++ ++ + ++ +R A PGEFS RAF N K+DL Sbjct: 63 ALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIKGVRPARPGEFSERAFLNDKMDL 122 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E + +++ + GE S ++ L H+R ++EA +DF EEE + Sbjct: 123 TQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPEEE-ID 181 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 + +V D+ + +++++ + G I+R G K+VI G NAGKSSL NAL+ K+ A Sbjct: 182 FLADGKVSADLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKESA 241 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTDI GTTRDVL + ++G + I DTAG+R+ D VEK GI+R + E+ AD +L + Sbjct: 242 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDAVEKIGIERAWEEIRQADRVLFM 301 Query: 306 -----KEINSKKEI------SFPKNIDFIFIGTKSD-----LYSTYTEEYDHL-ISSFTG 348 E ++I P+NI I K+D L + + + +S+ TG Sbjct: 302 VDGTTTEATDPQDIWPDFVDKLPENIGITVIRNKADQTGEPLGICHVNQPTLIRLSAKTG 361 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407 +G++ L +K + + + +RHL L + +L + E +I+AE Sbjct: 362 QGVDALRQHLKECMGFSGNQ-EGGFMARRRHLDALERAAEHLAIGQQQLEGYMAGEILAE 420 Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LR+A L +ITG + LL IFS FCIGK Sbjct: 421 ELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 453 >gi|229530209|ref|ZP_04419598.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae 12129(1)] gi|229332342|gb|EEN97829.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae 12129(1)] Length = 453 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 161/453 (35%), Positives = 249/453 (54%), Gaps = 21/453 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + IIR+SGP V + + + PR A F DG+ LD+G+ Sbjct: 4 DTIVAQATAPGRGGVGIIRVSGPLAAHVAQTVTGRTL-RPRYAEYLPFTDEDGQQLDQGI 62 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + FP+P SFTGED E HGG V++ ++ + ++ +R A PGEFS RAF N K+DL Sbjct: 63 ALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIKGVRPARPGEFSERAFLNDKMDL 122 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E + +++ + GE S ++ L H+R ++EA +DF EEE + Sbjct: 123 TQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPEEE-ID 181 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 + +V D+ + +++++ + G I+R G K+VI G NAGKSSL NAL+ K+ A Sbjct: 182 FLADGKVSADLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKESA 241 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTDI GTTRDVL + ++G + I DTAG+R+ D VEK GI+R + E+ AD +L + Sbjct: 242 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDAVEKIGIERAWEEIRQADRVLFM 301 Query: 306 -----KEINSKKEI------SFPKNIDFIFIGTKSD-----LYSTYTEEYDHL-ISSFTG 348 E ++I P+NI I K+D L + + + +S+ TG Sbjct: 302 VDGTTTEATDPQDIWPDFFDKLPENIGITVIRNKADQTGEPLGICHVNQPTLIRLSAKTG 361 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407 +G++ L +K + + + +RHL L + +L + E +I+AE Sbjct: 362 QGVDALRQHLKECMGFSGNQ-EGGFMARRRHLDALERAAEHLAIGQQQLEGYMAGEILAE 420 Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LR+A L +ITG + LL IFS FCIGK Sbjct: 421 ELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 453 >gi|15640035|ref|NP_062587.1| tRNA modification GTPase TrmE [Vibrio cholerae O1 biovar El Tor str. N16961] gi|153827657|ref|ZP_01980324.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae MZO-2] gi|227080240|ref|YP_002808791.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae M66-2] gi|254851569|ref|ZP_05240919.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae MO10] gi|298501189|ref|ZP_07010988.1| tRNA modification GTPase TrmE [Vibrio cholerae MAK 757] gi|9654394|gb|AAF93181.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae O1 biovar El Tor str. N16961] gi|149737870|gb|EDM52775.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae MZO-2] gi|227008128|gb|ACP04340.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae M66-2] gi|254847274|gb|EET25688.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae MO10] gi|297540061|gb|EFH76123.1| tRNA modification GTPase TrmE [Vibrio cholerae MAK 757] Length = 464 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 161/453 (35%), Positives = 249/453 (54%), Gaps = 21/453 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + IIR+SGP V + + + PR A F DG+ LD+G+ Sbjct: 15 DTIVAQATAPGRGGVGIIRVSGPLAAHVAQTVTGRTL-RPRYAEYLPFTDEDGQQLDQGI 73 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + FP+P SFTGED E HGG V++ ++ + ++ +R A PGEFS RAF N K+DL Sbjct: 74 ALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIKGVRPARPGEFSERAFLNDKMDL 133 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E + +++ + GE S ++ L H+R ++EA +DF EEE + Sbjct: 134 TQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPEEE-ID 192 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 + +V D+ + +++++ + G I+R G K+VI G NAGKSSL NAL+ K+ A Sbjct: 193 FLADGKVSADLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKESA 252 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTDI GTTRDVL + ++G + I DTAG+R+ D VEK GI+R + E+ AD +L + Sbjct: 253 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDAVEKIGIERAWEEIRQADRVLFM 312 Query: 306 -----KEINSKKEI------SFPKNIDFIFIGTKSD-----LYSTYTEEYDHL-ISSFTG 348 E ++I P+NI I K+D L + + + +S+ TG Sbjct: 313 VDGTTTEATDPQDIWPDFVDKLPENIGITVIRNKADQTGEPLGICHVNQPTLIRLSAKTG 372 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407 +G++ L +K + + + +RHL L + +L + E +I+AE Sbjct: 373 QGVDALRQHLKECMGFSGNQ-EGGFMARRRHLDALERAAEHLAIGQQQLEGYMAGEILAE 431 Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LR+A L +ITG + LL IFS FCIGK Sbjct: 432 ELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 464 >gi|294010016|ref|YP_003543476.1| tRNA modification GTPase [Sphingobium japonicum UT26S] gi|292673346|dbj|BAI94864.1| tRNA modification GTPase [Sphingobium japonicum UT26S] Length = 427 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 157/442 (35%), Positives = 239/442 (54%), Gaps = 24/442 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRK--ASLRYFFGLDGRILDK 63 ETIFA+S+GA P+ I+++R+SGP Q + P R +SLR DG +LD+ Sbjct: 3 ETIFALSSGAPPAGIAVVRISGPGAGQALLALAGSLPPARRARLSSLRDPR--DGALLDR 60 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 L++ FP P++ TGED AE H HGG AV+ + + LA + LR A GEF+RRAF NG++ Sbjct: 61 ALVLWFPGPDTATGEDLAELHCHGGRAVIAAVEQALASLQGLRRAEAGEFTRRAFANGRM 120 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL E L+DL+++ET+ QRR ++ G S QW+ L + + EA LDFS+E+D Sbjct: 121 DLNAVEGLSDLLAAETQQQRRAALLMAEGHFSQRVEQWLRTLLDLSAMTEAALDFSDEDD 180 Query: 184 VQNFS-SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 V + + + L D+ + ++ E +R+G ++V+ G NAGKS+L N L + Sbjct: 181 VPDHGIETRIGQGVRILAEDVRAVLASPS-AERLRDGVRVVLAGPPNAGKSTLLNRLVGR 239 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADL 301 D AIV+D+ GTTRD + + L G +DTAG+R ET D +E GI R +E AD+ Sbjct: 240 DAAIVSDVAGTTRDRIEVPAALGGTAFLFTDTAGLRGETGDAIEAIGIDRARGALEAADI 299 Query: 302 ILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSI 361 IL L + P+ D I I + D ++ + +S+ TGEG++ L + + Sbjct: 300 ILWLGPADEA-----PRE-DAIVIAAQCDRHA-KADRPGLPLSAVTGEGMDRLASML--- 349 Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQ---TVRYLEMASLNEKDCGLDIIAENLRLASVSLGK 418 ++ +P + H Q R + + L I+AE LR A ++ Sbjct: 350 ----LERAAMLLPGEGDYALHQRQREGAARLHAHLTSAQGSDDLLIVAEELRQARHAIDL 405 Query: 419 ITGCVDVEQLLDIIFSKFCIGK 440 +TG E +LD +F+ FCIGK Sbjct: 406 LTGRAGTEDMLDRLFAGFCIGK 427 >gi|262172771|ref|ZP_06040449.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio mimicus MB-451] gi|261893847|gb|EEY39833.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio mimicus MB-451] Length = 453 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 161/453 (35%), Positives = 250/453 (55%), Gaps = 21/453 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + IIR+SGP V + + + PR A F +G+ LD+G+ Sbjct: 4 DTIVAQATAPGRGGVGIIRVSGPLAAHVAQTVTGRTL-RPRYAEYLPFTDENGQQLDQGI 62 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + FP+P SFTGED E HGG V++ ++ + ++ +R A PGEFS RAF N K+DL Sbjct: 63 ALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQINGVRPARPGEFSERAFLNDKMDL 122 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E + +++ + GE S ++ L H+R ++EA +DF EEE + Sbjct: 123 TQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPEEE-ID 181 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 + +V D+ + +++++ + G I+R G K+VI G NAGKSSL NAL+ K+ A Sbjct: 182 FLADGKVSADLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKESA 241 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTDI GTTRDVL + ++G + I DTAG+R+ D VEK GI+R + E+ AD +L + Sbjct: 242 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDAVEKIGIERAWEEIRQADRVLFM 301 Query: 306 -----KEINSKKEI------SFPKNIDFIFIGTKSD-----LYSTYTEEYDHL-ISSFTG 348 E +EI P+NI I K+D L + + + +S+ TG Sbjct: 302 VDGTTTEATDPQEIWPDFVDKLPENIGITVIRNKADQTGEPLGICHVNQPTLIRLSAKTG 361 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407 +G++ L +K + + + +RHL L + +L++ E +I+AE Sbjct: 362 QGVDALRQHLKECMGFAGNQ-EGGFMARRRHLDALERAAEHLDIGQQQLEGYMAGEILAE 420 Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LR+A L +ITG + LL IFS FCIGK Sbjct: 421 ELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 453 >gi|304313413|ref|YP_003813011.1| tRNA modification GTPase [gamma proteobacterium HdN1] gi|301799146|emb|CBL47389.1| tRNA modification GTPase [gamma proteobacterium HdN1] Length = 464 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 166/459 (36%), Positives = 246/459 (53%), Gaps = 27/459 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF-PRKASLRYFFGLDGRILDKG 64 +TI A +T + I+RLSGP + IC + R A FF G +LD G Sbjct: 9 DTIAAQATPPGRGGVGIVRLSGPEALSIGLAICLRSGVLQARHAYFSEFFDAAGNVLDHG 68 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 LL+ FPSP SFTGED E HGG V++ +++ + RLA PGEFS RAF N K+D Sbjct: 69 LLLYFPSPHSFTGEDVIELQAHGGPFVISQLMDRAITL-GARLARPGEFSERAFHNDKLD 127 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ADLI S +E R ++ + G S +++++L +R F+EA +DF EEE + Sbjct: 128 LAQAEAIADLIDSGSEQAARSAIRSLQGAFSIKINEFLNELIRLRVFVEAAIDFPEEE-I 186 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 S V + + L + + S+ K G +++ G ++V+ G NAGKSSL N LA D Sbjct: 187 DFLSDGRVQDQLNKLLAHLDAIFSEAKRGVLLKEGMRVVLAGKPNAGKSSLLNQLAGTDR 246 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIVT I GTTRDVL + L+G + ISDTAG+RE+ D VE+EGI+R + E+E AD ILL Sbjct: 247 AIVTPIAGTTRDVLHEHIHLDGMPLHISDTAGLRESADEVEQEGIRRAWQEIERADRILL 306 Query: 305 LKEINSKKEIS----FPKNID------------FIFIGTKSDLYSTYTEEYDH------L 342 L + + ++ +P+ I+ + K DL + +H Sbjct: 307 LTDASEHLDLHPAKFWPEFINTLHERAPSAMNRMTIVRNKIDLADEAAGQSEHDNIPTIR 366 Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402 + + +G+G++ L +K I+ + + + + +RHL L +L G Sbjct: 367 LCARSGQGVDLLREHLKQIMGYE-EPAETTFSARQRHLLALETAREFLVTGQQQLLSHGA 425 Query: 403 -DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE+LR A L ITG + LL IFS FCIGK Sbjct: 426 GELLAEDLRAAQEQLSTITGQFTSDDLLGEIFSSFCIGK 464 >gi|227328550|ref|ZP_03832574.1| tRNA modification GTPase TrmE [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 454 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 161/454 (35%), Positives = 248/454 (54%), Gaps = 23/454 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + I+R+SG + V + K P PR A F +G LD+G+ Sbjct: 5 DTIVAQATPPGRGGVGILRISGQAAADVAHTVLGKL-PKPRHADYLPFRDANGTTLDQGI 63 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + FP P SFTGED E HGG +++ +L+ + + N+R+A PGEFS RAF N K+DL Sbjct: 64 ALWFPGPNSFTGEDVLELQGHGGPVILDLLLQRILTLSNVRIARPGEFSERAFLNDKLDL 123 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E R ++ + G S+ Q ++ LTH+R ++EA +DF +EE + Sbjct: 124 AQAEAIADLIDASSEQAARSALNSLQGVFSTRINQLVEALTHLRIYVEAAIDFPDEE-ID 182 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S ++ + + D+ + ++ G ++R G K+VI G NAGKSSL NALA ++ A Sbjct: 183 FLSDGKIEAQLNGVMADLDAVRAEAHQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAA 242 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTDI GTTRDVL + ++G + I DTAG+R+ D VE+ GI+R + E+E AD +L + Sbjct: 243 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFM 302 Query: 306 -----------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD---H---LISSFTG 348 ++I + PK + + K+D+ D H +S+ TG Sbjct: 303 VDGTTTQATEPEQIWPEFMARLPKTLPITVVRNKADVTGEALGIEDVNTHSLIRLSARTG 362 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIA 406 EG++ L + +K + + +RHL L ++L L G +++A Sbjct: 363 EGIDTLRDHLKQSMGFT-SNTEGGFLARRRHLQALELAAQHLIQGKEQLVSAYAG-ELLA 420 Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E LRLA +L +ITG + LL IFS FCIGK Sbjct: 421 EELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454 >gi|83594953|ref|YP_428705.1| tRNA modification GTPase TrmE [Rhodospirillum rubrum ATCC 11170] gi|123525454|sp|Q2RN77|MNME_RHORT RecName: Full=tRNA modification GTPase mnmE gi|83577867|gb|ABC24418.1| tRNA modification GTPase trmE [Rhodospirillum rubrum ATCC 11170] Length = 455 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 163/456 (35%), Positives = 242/456 (53%), Gaps = 25/456 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK------------KKPFPRKASLRYF 53 +TIFA +T + ++I+RLSGP + + + P Sbjct: 4 DTIFAPATARGRAGVAIVRLSGPRAATALTLLAGRLPEARRATRAALRSPPSGPGPTGPG 63 Query: 54 FGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEF 113 G +LD L++ FP+P SFTGED AE H+HGG AV+ +L L +P LR A GEF Sbjct: 64 PEEGGEVLDDALVLWFPAPASFTGEDVAELHIHGGRAVLAAVLGALGDLPGLRPAEAGEF 123 Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173 SRRAF NG++DL AE+LADL+ +ET+ QRR ++ G L LY W + + +E Sbjct: 124 SRRAFLNGRLDLTAAEALADLVDAETQAQRRQALRQADGALVRLYEGWRKTGIGLLAHLE 183 Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233 A LDF +ED+ V I L + ++ H+ GE +R+G ++ ++G N GKS Sbjct: 184 AVLDFP-DEDLPPEVETAVRGGIGALADALAGHLDDRHRGERLRDGLQVAVVGAPNVGKS 242 Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293 SL N LA+++ AIV+DI GTTRD++ + LDL GY + ++DTAG+RET D +E EG++R Sbjct: 243 SLVNRLARREAAIVSDIAGTTRDIVEVALDLGGYPLVVADTAGLRETSDGIEAEGVRRAR 302 Query: 294 LEVENADLILLLKEINSKKEISFPK----NIDFIFIGTKSDLYSTYTEEY-----DHLIS 344 + ADL L + + + P + + TK DL E +S Sbjct: 303 ARLAAADLTLAVSDGTVENGADDPAADLTGEAVLRVVTKRDLLDPRAVERWLARGALPVS 362 Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI 404 + TGEGL+ L ++S F+ P+ R H S + + ++ Sbjct: 363 TLTGEGLDALEAALESRARAFFEG--DGTPALTRQ-RHRSALMEARAALRRAAEAPLAEL 419 Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +AE+LRLA ++G+ITG V V+ +LD+IF FCIGK Sbjct: 420 VAEDLRLALRAIGRITGRVTVDDVLDVIFRDFCIGK 455 >gi|227113121|ref|ZP_03826777.1| tRNA modification GTPase TrmE [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 454 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 161/454 (35%), Positives = 249/454 (54%), Gaps = 23/454 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + I+R+SG + V + K P PR A F +G LD+G+ Sbjct: 5 DTIVAQATPPGRGGVGILRISGQAAADVAHAVLGKL-PKPRHADYLPFRDANGTTLDQGI 63 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + FP P SFTGED E HGG +++ +L+ + + +R+A PGEFS RAF N K+DL Sbjct: 64 ALWFPGPNSFTGEDVLELQGHGGPVILDLLLQRILTLSTVRIARPGEFSERAFLNDKLDL 123 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E R ++ + G S+ Q ++ LTH+R ++EA +DF +EE + Sbjct: 124 AQAEAIADLIDASSEQAARSALNSLQGVFSTRINQLVEALTHLRIYVEAAIDFPDEE-ID 182 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S ++ + + D+ + ++ G ++R G K+VI G NAGKSSL NALA ++ A Sbjct: 183 FLSDGKIEAQLNGVMADLDAVRAEAHQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAA 242 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTDI GTTRDVL + ++G + I DTAG+R+ D VE+ GI+R + E+E AD +L + Sbjct: 243 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFM 302 Query: 306 -----------KEINSKKEISFPKNIDFIFIGTKSDLY--STYTEEYDH----LISSFTG 348 ++I + PK + + K+D+ + EE + +S+ TG Sbjct: 303 VDGTTTQATEPEQIWPEFMARLPKTLPITVVRNKADVTGETLGIEEVNTHSLIRLSARTG 362 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIA 406 EG++ L + +K + + +RHL L ++L L G +++A Sbjct: 363 EGIDTLRDHLKQSMGFT-SNTEGGFLARRRHLQALELAAQHLIQGKEQLVSAYAG-ELLA 420 Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E LRLA SL +ITG + LL IFS FCIGK Sbjct: 421 EELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 454 >gi|325199077|gb|ADY94533.1| tRNA modification GTPase TrmE [Neisseria meningitidis G2136] Length = 427 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 161/435 (37%), Positives = 245/435 (56%), Gaps = 24/435 (5%) Query: 22 IIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSA 81 +IR+SG + + E +C K P PR A+ F DG+ +D GLL+ F +P SFTGED Sbjct: 1 MIRISGKNLLPMAEALCGKT-PKPRVATYADFTDADGQAIDSGLLLFFAAPASFTGEDVI 59 Query: 82 EFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEM 141 E HGG V++ +L ++ RLA PGEF++RAF N K+DL +AE +ADLI + + Sbjct: 60 ELQGHGGPVVMDMLLNRCLEL-GARLAEPGEFTKRAFLNDKLDLAQAEGVADLIDASSRS 118 Query: 142 QRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKN 201 RL++ + G+ S ++ L +R +EA LDF EE D+ + + + L+ Sbjct: 119 AARLALRSLKGDFSRRIHGLVEDLITLRMLVEATLDFPEE-DIDFLEAADARGKLDGLRR 177 Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261 + ++ + G I+R G +V++G N GKSSL NALA +VAIVTDI GTTRD + Sbjct: 178 AVDDVLANAQQGAILREGLNVVLVGAPNVGKSSLLNALAGDEVAIVTDIAGTTRDAVRER 237 Query: 262 LDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE----INSKKEI--- 314 + ++G V I DTAG+RETDD+VE+ GI+R+ V AD+ L+L + +N K Sbjct: 238 ILIDGVPVHIVDTAGLRETDDVVERIGIERSRKAVSEADVALVLVDPREGVNDKTRAILD 297 Query: 315 SFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFTGEGLEELINKIKSILSNKFKK 368 + P + I I +KSDL++ + +S+ TG+GL+ L + + + Sbjct: 298 ALPPELKRIEIHSKSDLHAHAAGGFGTGAETVIALSAKTGDGLDALKRTLLREAGWQGEG 357 Query: 369 LPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG---LDIIAENLRLASVSLGKITGCVDV 425 + + RH+ L L +A+L CG +++ AE+LRLA V+ G+ITG Sbjct: 358 EGLFL-ARTRHVNALKAAQEELSLAAL----CGNHQIELFAEHLRLAQVACGEITGEFTA 412 Query: 426 EQLLDIIFSKFCIGK 440 + LL +IFS+FCIGK Sbjct: 413 DDLLGVIFSRFCIGK 427 >gi|157826422|ref|YP_001495486.1| tRNA modification GTPase TrmE [Rickettsia bellii OSU 85-389] gi|166234815|sp|A8GUF3|MNME_RICB8 RecName: Full=tRNA modification GTPase mnmE gi|157801726|gb|ABV78449.1| tRNA modification GTPase TrmE [Rickettsia bellii OSU 85-389] Length = 445 Score = 256 bits (655), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 163/453 (35%), Positives = 254/453 (56%), Gaps = 27/453 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL----DGRIL 61 ETIFA S+ + +++ R+SG +V + + K PR Y+ L ++ Sbjct: 2 ETIFAQSSSFGKAGVAVFRVSGTKSLEVLKLLTGKSNFKPR---FMYYQKLTSPESNDLI 58 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121 D +++ F +P SFTGED E H HG A+ + L +P +RLA GEF++RAF N Sbjct: 59 DNAMVVYFKAPNSFTGEDVVEIHTHGSKAISIMLTNALLNIPGVRLAEAGEFTKRAFLNN 118 Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181 K DL AE +ADLI++ET MQ + ++ G L LY W +L I S +EA +DF + Sbjct: 119 KFDLTAAEGIADLINAETIMQHKQAIRQAGGALEELYNSWRSQLLRIISLLEAYIDFP-D 177 Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 ED+ K+V N L N IS +++ + GE++R+G K+ I+G NAGKSSL N L + Sbjct: 178 EDIPESVLKDVTNTHKTLINTISEYLNDNRKGELLRSGLKLAIIGPPNAGKSSLLNFLMR 237 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENAD 300 +D+AIV++I GTTRD++ LD+ GY + + DTAGIR E++D++E+EGIKR + AD Sbjct: 238 RDIAIVSNIAGTTRDIIEGHLDIGGYPIILQDTAGIRGESNDVIEQEGIKRAIDSAKKAD 297 Query: 301 LILLLKEINS-----KKEISFPKNIDFIFIGTKSDLYS-----TYTEEYDHLISSFTGE- 349 + +++ + + ++I+ + + I I K DL +Y L S Sbjct: 298 IKIVMFDAETLDSAVNEDITGLIDENTIVIINKIDLIPENRIFNIENKYRCLKVSIKNNI 357 Query: 350 GLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAE 407 L ++ I+ I N F + P+ +++RH +HL Q + YL+ +L D L + E Sbjct: 358 ALPSILKNIEEIAENMAGFTETPYI--TNERHRHHLKQALVYLKDFNL---DNDLVLATE 412 Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++R+ +G ITG +DVE++L IF FCIGK Sbjct: 413 DIRMTMHRIGAITGIIDVEEILGEIFKNFCIGK 445 >gi|307215187|gb|EFN89959.1| tRNA modification GTPase GTPBP3, mitochondrial [Harpegnathos saltator] Length = 435 Score = 256 bits (655), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 167/432 (38%), Positives = 244/432 (56%), Gaps = 41/432 (9%) Query: 45 PRKASLRYFFGLD-GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP 103 PRKA LR + G ++D GL + FP P SFTGEDS EFHVHGG A+++ +++ L+K+ Sbjct: 9 PRKAFLRKIRDPETGEVIDHGLCLWFPGPHSFTGEDSVEFHVHGGPAILSRLMQTLSKL- 67 Query: 104 NLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWID 163 + A PGEF+RRAF N K+DL E E LADLI +ETE QR+ ++ G L LY W Sbjct: 68 QVYPAQPGEFTRRAFYNNKLDLTEVEGLADLIEAETECQRKQALLQADGLLRKLYDNWRK 127 Query: 164 KLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIV 223 L+ + IEA +DF E++++++ + + L +D+ H++ G+ GEI+RNG + V Sbjct: 128 VLSEGVASIEAYIDFGEDDNIESDVVERTHGTLKKLISDMEEHLADGRKGEILRNGVRTV 187 Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDD 282 I+G N GKSSL N L +++ IVT I GTTRDV+ + ++ GY V I+DTAGI + TDD Sbjct: 188 IVGEPNVGKSSLLNHLVQRNAVIVTPIAGTTRDVIELSANISGYPVLIADTAGITDHTDD 247 Query: 283 IVEKEGIKRTFLEVENADLILLLKEIN--SKKEISFPKNID------------------- 321 IVE EG++R V NAD ++++ + + + +++ + Sbjct: 248 IVEAEGVRRARKHVVNADFVVVVMDASKVAASNVTYDDYVHEYLSSLGIHELLTKMGKQR 307 Query: 322 FIFIGTKSDLYSTYTEEY-----DHLISSFTGEGLEELI----NKIKSILSNKFKKLPFS 372 F+ I K DL S E LIS T G +L+ ++ ++I N + P Sbjct: 308 FVVIMNKRDLLSEEDERRLSDTEGVLISCKTESGFRDLLRSLTDRFRNICGNPSAESP-- 365 Query: 373 IPSHKRHLYHLSQTVR----YLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQL 428 S RH HL+Q +R YLE+ + D I AE + A LG+ITG V +++ Sbjct: 366 TISQARHRNHLTQCLRHLQNYLELCTNERHDVA--IAAEEIHKAMRELGRITGHVSTDEI 423 Query: 429 LDIIFSKFCIGK 440 LDIIF FCIGK Sbjct: 424 LDIIFKNFCIGK 435 >gi|238765479|ref|ZP_04626398.1| tRNA modification GTPase mnmE [Yersinia kristensenii ATCC 33638] gi|238696303|gb|EEP89101.1| tRNA modification GTPase mnmE [Yersinia kristensenii ATCC 33638] Length = 454 Score = 256 bits (655), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 165/454 (36%), Positives = 248/454 (54%), Gaps = 23/454 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + I+R+SG + V E + K P PR A F DG LD+G+ Sbjct: 5 DTIVAQATPPGRGGVGILRVSGRAAAAVAEAVLGKL-PKPRYADYLPFKDADGSTLDQGI 63 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + FP P SFTGED E HGG +++ +L+ + +P LR+A PGEFS RAF N K+DL Sbjct: 64 ALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILALPGLRIARPGEFSERAFLNDKLDL 123 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E R ++ + G S + ++ LTH+R ++EA +DF +EE + Sbjct: 124 AQAEAIADLIDASSEQAARSAVNSLQGAFSVRIHKLVEALTHLRIYVEAAIDFPDEE-ID 182 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S ++ + + D+ ++ + G ++R G K+VI G NAGKSSL NALA ++ A Sbjct: 183 FLSDGKIEGQLNGVMADLEQVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAA 242 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTDI GTTRDVL + ++G + I DTAG+RE +D VE+ GI+R + E+E AD +L + Sbjct: 243 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREANDEVERIGIERAWHEIEQADRVLFM 302 Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDH---LISSFTG 348 + + + P + + K+D+ TE H +S+ TG Sbjct: 303 VDGTTTEATEPAAIWPEFMARLPATLPITVVRNKADITGETLGLTEVNGHSLIRLSARTG 362 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIA 406 EG++ L N +K + + +RHL L ++L L G +++A Sbjct: 363 EGIDLLRNHLKQSMGFT-SNTEGGFLARRRHLQALETAAQHLVQGHEQLVSAYAG-ELLA 420 Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E LRLA SL +ITG + LL IFS FCIGK Sbjct: 421 EELRLAQQSLSEITGEFSSDDLLGRIFSSFCIGK 454 >gi|121730054|ref|ZP_01682463.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae V52] gi|147673066|ref|YP_001218408.1| tRNA modification GTPase TrmE [Vibrio cholerae O395] gi|254291135|ref|ZP_04961932.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae AM-19226] gi|121628203|gb|EAX60726.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae V52] gi|146314949|gb|ABQ19488.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae O395] gi|150422980|gb|EDN14930.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae AM-19226] gi|227011994|gb|ACP08204.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae O395] Length = 464 Score = 256 bits (655), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 161/453 (35%), Positives = 249/453 (54%), Gaps = 21/453 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + IIR+SGP V + + + PR A F DG+ LD+G+ Sbjct: 15 DTIVAQATALGRGGVGIIRVSGPLAAHVAQTVTGRTL-RPRYAEYLPFTDEDGQQLDQGI 73 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + FP+P SFTGED E HGG V++ ++ + ++ +R A PGEFS RAF N K+DL Sbjct: 74 ALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIKGVRPARPGEFSERAFLNDKMDL 133 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E + +++ + GE S ++ L H+R ++EA +DF EEE + Sbjct: 134 TQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPEEE-ID 192 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 + +V D+ + +++++ + G I+R G K+VI G NAGKSSL NAL+ K+ A Sbjct: 193 FLADGKVSADLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKESA 252 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTDI GTTRDVL + ++G + I DTAG+R+ D VEK GI+R + E+ AD +L + Sbjct: 253 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDAVEKIGIERAWEEIRQADRVLFM 312 Query: 306 -----KEINSKKEI------SFPKNIDFIFIGTKSD-----LYSTYTEEYDHL-ISSFTG 348 E ++I P+NI I K+D L + + + +S+ TG Sbjct: 313 VDGTTTEATDPQDIWPDFVDKLPENIGITVIRNKADQTGEPLGICHVNQPTLIRLSAKTG 372 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407 +G++ L +K + + + +RHL L + +L + E +I+AE Sbjct: 373 QGVDALRQHLKECMGFSGNQ-EGGFMARRRHLDALERAAEHLAIGQQQLEGYMAGEILAE 431 Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LR+A L +ITG + LL IFS FCIGK Sbjct: 432 ELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 464 >gi|332531204|ref|ZP_08407117.1| tRNA modification GTPase TrmE [Hylemonella gracilis ATCC 19624] gi|332039311|gb|EGI75724.1| tRNA modification GTPase TrmE [Hylemonella gracilis ATCC 19624] Length = 452 Score = 256 bits (655), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 162/460 (35%), Positives = 245/460 (53%), Gaps = 29/460 (6%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 + E I A++T A+ I+R SG + +C K PR A+ G Sbjct: 2 LARHHEPIVAIATAPGRGAVGIVRASGRDLTTLVHAVCGKAL-MPRHATYLPLRDARGEA 60 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEE-LAKMPNLRLANPGEFSRRAFE 119 +D GL I FP+P S+TGE+ E VHGG V+ +L L +P R+A PGEF++RAF Sbjct: 61 IDHGLAIHFPAPHSYTGEEVLELQVHGGPVVLQLLLARCLEALPGSRIALPGEFTQRAFL 120 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NGK+DL +AE++ADLI + TE R + + G S Q + L H+R +EA LDF Sbjct: 121 NGKLDLAQAEAVADLIDASTEAAARSAGRSLEGAFSREIAQLREALVHLRMLVEATLDFP 180 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 EE D+ + + L+ + + Q + G ++R G K+VI G NAGKSSL NAL Sbjct: 181 EE-DIDFLRQADAQGQLSRLQVQLQVILRQAQQGSLLREGIKVVIAGQPNAGKSSLLNAL 239 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 A ++AIVT I GTTRDV+ + +EG + + DTAG+RE+ D VE+ GI+R + ++ +A Sbjct: 240 AGAELAIVTPIAGTTRDVVQQTIQIEGVPLHVVDTAGLRESQDEVERIGIERAWAQIASA 299 Query: 300 DLILLLKEINSKKEISF-----------PKNIDFIFIGTKSDLYSTYTEEYDHLISSFTG 348 D +L L ++ + + + P ++ I I K D +S+ TG Sbjct: 300 DAVLFLHDLTRQIQADYLASDEALAQRLPSDVPVIHIWNKHDQAPEAVNRPGISLSAKTG 359 Query: 349 EGLEELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMASLNEKDCGLD---- 403 GL+ L + + + ++ P + + +RH+ L R+L+ A +C LD Sbjct: 360 AGLDLLRQAL--LRTVGWQSAPEGLFLARERHVQALRSVSRHLQAA-----ECHLDEKAL 412 Query: 404 ---IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++AE LRLA +L +ITG + LL +IFS+FCIGK Sbjct: 413 ALDLLAEELRLAQNALNEITGEFTSDDLLGVIFSRFCIGK 452 >gi|258622951|ref|ZP_05717966.1| tRNA modification GTPase [Vibrio mimicus VM573] gi|258584734|gb|EEW09468.1| tRNA modification GTPase [Vibrio mimicus VM573] Length = 464 Score = 256 bits (655), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 161/453 (35%), Positives = 250/453 (55%), Gaps = 21/453 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + IIR+SGP V + + + PR A F +G+ LD+G+ Sbjct: 15 DTIVAQATALGRGGVGIIRVSGPLAAHVAQTVTGRTL-RPRYAEYLPFTDENGQQLDQGI 73 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + FP+P SFTGED E HGG V++ ++ + ++ +R A PGEFS RAF N K+DL Sbjct: 74 ALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQINGVRPARPGEFSERAFLNDKMDL 133 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E + +++ + GE S ++ L H+R ++EA +DF EEE + Sbjct: 134 TQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPEEE-ID 192 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 + +V D+ + +++++ + G I+R G K+VI G NAGKSSL NAL+ K+ A Sbjct: 193 FLADGKVSADLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKESA 252 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTDI GTTRDVL + ++G + I DTAG+R+ D VEK GI+R + E+ AD +L + Sbjct: 253 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDAVEKIGIERAWEEIRQADRVLFM 312 Query: 306 -----KEINSKKEI------SFPKNIDFIFIGTKSD-----LYSTYTEEYDHL-ISSFTG 348 E +EI P+NI I K+D L + + + +S+ TG Sbjct: 313 VDGTTTEATDPQEIWPDFVDKLPENIGITVIRNKADQTGEPLGICHVNQPTLIRLSAKTG 372 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407 +G++ L +K + + + +RHL L + +L++ E +I+AE Sbjct: 373 QGVDALRQHLKECMGFAGNQ-EGGFMARRRHLDALERAAEHLDIGQQQLEGYMAGEILAE 431 Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LR+A L +ITG + LL IFS FCIGK Sbjct: 432 ELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 464 >gi|167036429|ref|YP_001671660.1| tRNA modification GTPase TrmE [Pseudomonas putida GB-1] gi|189036205|sp|B0KRC0|MNME_PSEPG RecName: Full=tRNA modification GTPase mnmE gi|166862917|gb|ABZ01325.1| tRNA modification GTPase TrmE [Pseudomonas putida GB-1] Length = 456 Score = 256 bits (655), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 168/463 (36%), Positives = 259/463 (55%), Gaps = 30/463 (6%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 MN +ETI A++T + I+RLSGP + + I + PR A F DG + Sbjct: 1 MNTVRETIAAIATAQGRGGVGIVRLSGPLAGKAGQLITGRTLT-PRHAHYGPFRDDDGLV 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG V++ +L+ ++ RLA PGEFS RAF N Sbjct: 60 LDEGIALFFPGPNSFTGEDVLELQGHGGPVVLDMLLQRCVQV-GCRLARPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + + R ++ + GE S + L +R ++EA +DF E Sbjct: 119 DKLDLAQAEAIADLIEASSSQAARNALRSLQGEFSKRVHSLTEALIALRIYVEAAIDFPE 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + + VL+ + ++ ++S+ + G ++R+G +VI G NAGKSSL N LA Sbjct: 179 EE-IDFLADGHVLSMLDAVRGELSTVQREAGQGALLRDGMTVVIAGRPNAGKSSLLNQLA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRD+L + ++G + + DTAG+R+TDD VEK G++R + AD Sbjct: 238 GREAAIVTDIAGTTRDILREHIHIDGMPLHVVDTAGLRDTDDHVEKIGVERALKAIGEAD 297 Query: 301 LILLLKEINSKKEIS-----FPKNID-------FIFIGTKSDLYSTYT--EEYD--HLIS 344 +LL+ + ++ E S +P+ +D I K+DL + E+ D H+ Sbjct: 298 RVLLVVD-STAPEASDPFALWPEFLDQRPDPAKVTLIRNKADLSGEHVGLEQCDDGHVTI 356 Query: 345 SFTGE----GLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNE 397 + + + GL+ L + +K+ + + + FS + +RHL L Q +LE A L Sbjct: 357 TLSAKGDDTGLQLLRDHLKACMGYEQTAESGFS--ARRRHLDALRQASEHLEHGRAQLTL 414 Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G +++AE+LR A +LG+ITG + LL IFS FCIGK Sbjct: 415 AGAG-ELLAEDLRQAQHALGEITGAFSSDDLLGRIFSSFCIGK 456 >gi|205829218|sp|A5F485|MNME_VIBC3 RecName: Full=tRNA modification GTPase mnmE Length = 453 Score = 256 bits (655), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 161/453 (35%), Positives = 249/453 (54%), Gaps = 21/453 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + IIR+SGP V + + + PR A F DG+ LD+G+ Sbjct: 4 DTIVAQATALGRGGVGIIRVSGPLAAHVAQTVTGRTL-RPRYAEYLPFTDEDGQQLDQGI 62 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + FP+P SFTGED E HGG V++ ++ + ++ +R A PGEFS RAF N K+DL Sbjct: 63 ALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIKGVRPARPGEFSERAFLNDKMDL 122 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E + +++ + GE S ++ L H+R ++EA +DF EEE + Sbjct: 123 TQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPEEE-ID 181 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 + +V D+ + +++++ + G I+R G K+VI G NAGKSSL NAL+ K+ A Sbjct: 182 FLADGKVSADLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKESA 241 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTDI GTTRDVL + ++G + I DTAG+R+ D VEK GI+R + E+ AD +L + Sbjct: 242 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDAVEKIGIERAWEEIRQADRVLFM 301 Query: 306 -----KEINSKKEI------SFPKNIDFIFIGTKSD-----LYSTYTEEYDHL-ISSFTG 348 E ++I P+NI I K+D L + + + +S+ TG Sbjct: 302 VDGTTTEATDPQDIWPDFVDKLPENIGITVIRNKADQTGEPLGICHVNQPTLIRLSAKTG 361 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407 +G++ L +K + + + +RHL L + +L + E +I+AE Sbjct: 362 QGVDALRQHLKECMGFSGNQ-EGGFMARRRHLDALERAAEHLAIGQQQLEGYMAGEILAE 420 Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LR+A L +ITG + LL IFS FCIGK Sbjct: 421 ELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 453 >gi|239946722|ref|ZP_04698475.1| tRNA modification GTPase TrmE [Rickettsia endosymbiont of Ixodes scapularis] gi|239920998|gb|EER21022.1| tRNA modification GTPase TrmE [Rickettsia endosymbiont of Ixodes scapularis] Length = 445 Score = 256 bits (655), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 161/456 (35%), Positives = 257/456 (56%), Gaps = 33/456 (7%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD----GRIL 61 ETIFA S+ + +++ R+SGP +V + + +K K+ L Y+ + ++ Sbjct: 2 ETIFAQSSAFGKAGVAVFRISGPKSLEVLQLLTGRKD---FKSRLMYYQQITVPETKELI 58 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121 D +++ F SP SFTGED E H HG A+ ++ L + ++RLA GEF++RAF N Sbjct: 59 DNAMVVYFKSPGSFTGEDVVEIHTHGSKAISIMLINALLNIADIRLAEAGEFTKRAFLNN 118 Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181 K DL AE +ADLI++ET MQ R ++ SG L LY W +L I S +EA +DF + Sbjct: 119 KFDLTAAEGIADLINAETIMQHRQAIRQASGGLEELYNNWRSQLLKIISLLEAYIDFP-D 177 Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 ED+ + +V N L N+IS++++ + GE++ +G K+ I+G N GKSSL N L + Sbjct: 178 EDIPDSVLNDVNNTHKNLVNEISNYLNDNRRGELLNSGLKLAIIGPPNVGKSSLLNFLMQ 237 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENAD 300 +D+AIV++I GTTRD++ LD+ GY + + DTAGIR E+ DI+E+EGIKR + AD Sbjct: 238 RDIAIVSNIAGTTRDIIEGHLDIGGYPIILQDTAGIREESSDIIEQEGIKRAINSAKTAD 297 Query: 301 LILLL-------KEIN-------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF 346 + +++ IN + I+ ID I S ++S + +S Sbjct: 298 IKIIMFDAEKLDSSINEDIINLIDENTITIINKIDLI---EASKIFSIENKYKCLRVSVK 354 Query: 347 TGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI 404 L ++ I++I N F + P+ +++RH ++L Q + +L SL D L + Sbjct: 355 NNIALSSILKNIENIAENMAGFTETPY--ITNQRHRHYLKQALLHLTAFSL---DNDLVL 409 Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E++R+ + +G ITG ++VE++L IF FCIGK Sbjct: 410 ATEDIRMTARCIGTITGVINVEEILGEIFKNFCIGK 445 >gi|205422224|sp|A3DAS7|MNME_SHEB5 RecName: Full=tRNA modification GTPase mnmE Length = 453 Score = 256 bits (655), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 162/453 (35%), Positives = 251/453 (55%), Gaps = 21/453 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + IIR+SG V + P R A F G+++D+G+ Sbjct: 4 DTIVAQATAPGRGGVGIIRISGDKASNVAMAVLGHL-PKTRYADYCDFKSASGQVIDQGI 62 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + F P SFTGED E HGG V++ +++ + ++ +R+A PGEFS +AF N K+DL Sbjct: 63 ALFFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVMEVGGIRIAKPGEFSEQAFMNDKLDL 122 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + E + +++ + GE S + +D++T++R ++EA +DF +EE V Sbjct: 123 TQAEAIADLIDATCEQAAKSALQSLQGEFSKEVHELVDQVTNLRLYVEAAIDFPDEE-VD 181 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S ++ N + + + + + K G IIR G K+VI G NAGKSSL NALA K+ A Sbjct: 182 FLSDGKIANALYKIIDKLDLVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKESA 241 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVT+I GTTRDVL + L+G + I DTAG+R+T D VE+ GI+R + E+ +AD +L + Sbjct: 242 IVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTTDTVEQIGIERAWNEINSADRVLFM 301 Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYS---TYTEEYD---HLISSFTG 348 + + + P N+ I K+DL TEE + IS+ TG Sbjct: 302 VDGTTTAAVDPHAIWPDFVDRLPSNLGVTVIRNKADLTGEDLMMTEEQGYSVYRISAKTG 361 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407 G+EEL +KS++ + L + +RHL L +L++ E +++AE Sbjct: 362 LGVEELKQHLKSLMGYQ-SNLEGGFIARRRHLEALELAAGHLQLGKEQLEVYLAGELLAE 420 Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LR+ ++L +ITG + LL IFS FCIGK Sbjct: 421 ELRMCQLALSEITGRFTSDDLLGKIFSSFCIGK 453 >gi|19114056|ref|NP_593144.1| mitochondrial GTPase (predicted) [Schizosaccharomyces pombe 972h-] gi|14194952|sp|Q9UTE7|MSS1_SCHPO RecName: Full=tRNA modification GTPase mss1, mitochondrial; Flags: Precursor gi|6433990|emb|CAB60697.1| mitochondrial GTPase (predicted) [Schizosaccharomyces pombe] Length = 496 Score = 256 bits (654), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 164/481 (34%), Positives = 262/481 (54%), Gaps = 48/481 (9%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYF-FGLDGRIL 61 H+ TI+A+ST SA++I+R+SGP+ +V + + P PR ASLR + ++ Sbjct: 21 HQIPTIYALSTPPGTSAVAIVRISGPNACKVAKTLAGSV-PKPRIASLRTIKHPVRSEVI 79 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAK--MPNLRLANPGEFSRRAFE 119 DK L++ F P SFTGED E +HGG AVV+ LE + + +PN+R A PGEFS RAF Sbjct: 80 DKALMLYFKKPSSFTGEDVVELQLHGGTAVVDVTLEAIKQSGIPNIRYAKPGEFSERAFY 139 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NG+ DL + E L D+I+++T Q + + G + + +W KL R+F+EA +DFS Sbjct: 140 NGRADLTQLEGLIDVINAQTAEQLYSANKEAHGSIYDICFRWRKKLIEYRAFLEASIDFS 199 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 EE ++ + + ++ ++ +K++I +HI GK E++R G + ILG SNAGKSSL N L Sbjct: 200 EEHELDDIETIKLFEELNEMKDEIDAHIEGGKCKEVLRKGINVAILGPSNAGKSSLINLL 259 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI--VEKEGIKRTFLEVE 297 A + ++IV+ GTTRD + + +D+ G+ V +SDTAG+R+ +D+ +EK GI+ E Sbjct: 260 ANRRISIVSPQSGTTRDAIEVLVDINGFPVLLSDTAGLRKGEDVQEIEKIGIEIAKARAE 319 Query: 298 NADLILLLKEIN--------SKKEI------SFPKNIDFIFIGTKSDLYSTYT------- 336 + L L + IN + EI + F+ K D S YT Sbjct: 320 ESQLTLFVFPINYHSFSESLKQSEILETIKDCLRQRKPIHFLINKVDCVSDYTTMFKPIK 379 Query: 337 ----------EEYDHLISSFTGEGLEELINKIKSI-------LSNKFKKLPFSIPSHKRH 379 E H +S T EGL + + + S L+N K+ ++ ++R Sbjct: 380 AYLQKNFLIPENRIHAVSCKTKEGLIDFLQALSSTFECMVNPLTN--NKIQANLGWNERQ 437 Query: 380 LYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIG 439 + ++ +K + + AE ++LA+ +G++TG VD+E + +IFSKFC+G Sbjct: 438 --RQCLSSCSSHLSLALQKSSDIVVAAEEVKLATEDIGRVTGAVDMENVFSVIFSKFCVG 495 Query: 440 K 440 K Sbjct: 496 K 496 >gi|190171254|gb|ACE63697.1| ThdF [Leclercia adecarboxylata] Length = 439 Score = 256 bits (654), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 155/433 (35%), Positives = 242/433 (55%), Gaps = 23/433 (5%) Query: 20 ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGED 79 + I+R+SG +V E + K P PR A F DG LD+G+ + FP P SFTGED Sbjct: 11 VGILRISGQKAREVAEAVLGKL-PKPRYADYLPFKDTDGTALDQGIALWFPGPNSFTGED 69 Query: 80 SAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET 139 E HGG +++ +L+ + +P LR+A PGEFS RAF N K+DL +AE++ADLI + + Sbjct: 70 VLELQGHGGPVILDLLLKRILTLPGLRIARPGEFSERAFLNDKLDLAQAEAIADLIDASS 129 Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFL 199 E R ++ + G S+ ++ LTH+R ++EA +DF +EE + S ++ + + Sbjct: 130 EQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE-IDFLSDGKIEAQLNAV 188 Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259 ND+ + ++ + G ++R G K+VI G NAGKSSL NALA ++ AIVTDI GTTRDVL Sbjct: 189 MNDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLR 248 Query: 260 IDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS---- 315 + ++G + I DTAG+R+ D VE+ GI+R + E+E AD +L + + + + Sbjct: 249 EHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGTTTAAVDPAAI 308 Query: 316 -------FPKNIDFIFIGTKSDLYSTYTEEYD---H---LISSFTGEGLEELINKIKSIL 362 P N+ + K+D+ D H +S+ TGEG++EL + +K + Sbjct: 309 WPDFIARLPANLPITVVRNKADVTGETLGLSDVNGHSLIRLSARTGEGVDELRDHLKQSM 368 Query: 363 SNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSLGKIT 420 + + +RHL L + ++L+ A L G +++AE LRLA +L +IT Sbjct: 369 GFD-TSMEGGFLARRRHLQALEEAAQHLDQGKAQLLGAWAG-ELLAEELRLAQQALSEIT 426 Query: 421 GCVDVEQLLDIIF 433 G + LL IF Sbjct: 427 GEFTSDDLLGRIF 439 >gi|190171218|gb|ACE63679.1| ThdF [Enterobacter hormaechei ATCC 49162] Length = 439 Score = 256 bits (654), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 157/435 (36%), Positives = 241/435 (55%), Gaps = 23/435 (5%) Query: 18 SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77 + I+R+SG +V E + K P PR A F DG LD+G+ + FP P SFTG Sbjct: 9 GGVGILRISGLKAREVAEAVLGKL-PKPRYADYLPFKDADGTPLDQGIALWFPGPNSFTG 67 Query: 78 EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137 ED E HGG +++ +L+ + +P LR+A PGEFS RAF N K+DL +AE++ADLI + Sbjct: 68 EDVLELQGHGGPVILDLLLKRILTLPGLRIAKPGEFSERAFLNDKLDLAQAEAIADLIDA 127 Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197 +E R ++ + G S+ ++ LTH+R ++EA +DF +EE + S ++ + Sbjct: 128 SSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE-IDFLSDGKIEAQLN 186 Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257 + ND+ + ++ + G ++R G K+VI G NAGKSSL NALA ++ AIVTDI GTTRDV Sbjct: 187 QVMNDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDV 246 Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS-- 315 L + ++G + I DTAG+R+ D VE+ GI+R + E+E AD +L + + + + Sbjct: 247 LREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPA 306 Query: 316 ---------FPKNIDFIFIGTKSDLYSTYTEEYD---H---LISSFTGEGLEELINKIKS 360 P + + K+D+ D H +S+ TGEG+E+L N +K Sbjct: 307 EIWPDFIARLPAKLPITVVRNKADVTGETLGISDVNGHSLIRLSARTGEGVEDLRNHLKQ 366 Query: 361 ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSLGK 418 + + + +RHL L + R+LE A L G +++AE LRLA +L + Sbjct: 367 SMGFD-TSMEGGFLARRRHLQALEEAARHLEQGKAQLIGAWAG-ELLAEELRLAQQNLSE 424 Query: 419 ITGCVDVEQLLDIIF 433 ITG + LL IF Sbjct: 425 ITGEFTSDDLLGRIF 439 >gi|254282403|ref|ZP_04957371.1| tRNA modification GTPase TrmE [gamma proteobacterium NOR51-B] gi|219678606|gb|EED34955.1| tRNA modification GTPase TrmE [gamma proteobacterium NOR51-B] Length = 450 Score = 256 bits (654), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 173/460 (37%), Positives = 259/460 (56%), Gaps = 39/460 (8%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF-PRKASLRYFFGLDGRILD 62 +K+TI A++T + IIRLSGP + E IC P PR A R F +D Sbjct: 7 DKDTIAAIATPPGRGGVGIIRLSGPRALPIAEAICGG--PLAPRTAHFRSFSDQQNDAID 64 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 G+ + FP+P SFTGED E HGG + + +LE ++ R+A PGEFS RAF N K Sbjct: 65 NGIALSFPAPHSFTGEDVVELQGHGGPVIQSLLLERCLEL-GARMARPGEFSERAFLNDK 123 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFIEADLDF 178 IDL++AE++ADLI ++T + + +SG +L++L G +D +R ++EA +DF Sbjct: 124 IDLVQAEAIADLIDAQTRSAAKQAKASLSGRFSDQLTALAGTILD----LRKYVEAAIDF 179 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 +E D+ + +V + L N+ ++ + G I+R G ++V+ G NAGKSSL N Sbjct: 180 PDE-DIDFLAEGKVAGQLTALANNAKELLAGARRGAIVRAGAQVVLAGKPNAGKSSLMNR 238 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 LA VAIVTD+PGTTRD+L ++L G + ++DTAG+R+++D VE+EG+KR +E Sbjct: 239 LAGDAVAIVTDVPGTTRDLLRQPIELGGVALHLTDTAGLRDSEDTVEQEGVKRARSAIEM 298 Query: 299 ADLILLLKEINSKKEISFPKN----ID--FIFIGTKSDLYSTYTEEYDH------LISSF 346 AD+IL + I+ + S P N ID + + K DL + IS+ Sbjct: 299 ADVILHV--IDDTQTDSAPSNSTETIDGKTLLVYNKIDLSGRKPGHIEGESTAAVAISTK 356 Query: 347 TGEGL---EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE---KDC 400 TG G+ EE++ I + ++ + PFS + +RH+ L +TV +L + Sbjct: 357 TGAGMASFEEVLLGILGVSTD--TEDPFS--ARERHIRIL-ETVNNSLATALEQFLLSGA 411 Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G +++AE+LRL LG+ITG V E LL IFS FCIGK Sbjct: 412 G-ELLAEDLRLTHDQLGEITGRVTTEDLLGEIFSNFCIGK 450 >gi|153212987|ref|ZP_01948581.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae 1587] gi|124116213|gb|EAY35033.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae 1587] Length = 464 Score = 256 bits (654), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 161/453 (35%), Positives = 249/453 (54%), Gaps = 21/453 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + IIR+SGP V + + + PR A F DG+ LD+G+ Sbjct: 15 DTIVAQATALGRGGVGIIRVSGPLAAHVAQTVTGRTL-RPRYAEYLPFTDEDGQQLDQGI 73 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + FP+P SFTGED E HGG V++ ++ + ++ +R A PGEFS RAF N K+DL Sbjct: 74 ALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIKGVRPARPGEFSERAFLNDKMDL 133 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E + +++ + GE S ++ L H+R ++EA +DF EEE + Sbjct: 134 TQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPEEE-ID 192 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 + +V D+ + +++++ + G I+R G K+VI G NAGKSSL NAL+ K+ A Sbjct: 193 FLADGKVSADLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKESA 252 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTDI GTTRDVL + ++G + I DTAG+R+ D VEK GI+R + E+ AD +L + Sbjct: 253 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDAVEKIGIERAWEEIRQADRVLFM 312 Query: 306 -----KEINSKKEI------SFPKNIDFIFIGTKSD-----LYSTYTEEYDHL-ISSFTG 348 E ++I P+NI I K+D L + + + +S+ TG Sbjct: 313 VDGTTTEATDPQDIWPDFFDKLPENIGITVIRNKADQTGEPLGICHVNQPTLIRLSAKTG 372 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407 +G++ L +K + + + +RHL L + +L + E +I+AE Sbjct: 373 QGVDALRQHLKECMGFSGNQ-EGGFMARRRHLDALERAAEHLAIGQQQLEGYMAGEILAE 431 Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LR+A L +ITG + LL IFS FCIGK Sbjct: 432 ELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 464 >gi|205829220|sp|Q31DJ0|MNME_THICR RecName: Full=tRNA modification GTPase mnmE Length = 451 Score = 256 bits (654), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 153/449 (34%), Positives = 250/449 (55%), Gaps = 18/449 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A++T + I+R+SG ++ E + K P PR A F G +G++LD+G+ Sbjct: 7 DTIAAIATAPGRGGVGIVRVSGIKAAEIAEHVLGKC-PKPRYAHYGPFLGAEGQVLDQGI 65 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + FP+P SFTGE+ E HGG ++ +LE + ++ RLA PGEFS++AF N K+DL Sbjct: 66 ALFFPNPHSFTGENVLELQGHGGPVILQWLLERVVQL-GARLAEPGEFSKQAFLNDKLDL 124 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + ++ R ++ + G+ S+ + +++L +R ++EA +DF EEE + Sbjct: 125 AQAEAIADLIDASSQQAARSALRSLQGDFSNQVNELVEQLIQLRIYVEAAIDFPEEE-ID 183 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S +V + + + ++ + G ++R G +VILG NAGKSSL NAL+ ++ A Sbjct: 184 FLSDGKVAGQLQHILEQLHRVLASAQQGVLLREGMSVVILGRPNAGKSSLLNALSGRESA 243 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTDI GTTRD++ ++ ++G + + DTAG+RE D VE+ GI+R + +E AD IL++ Sbjct: 244 IVTDIAGTTRDIVKEEIQIDGMPLHVLDTAGLREATDAVEQIGIQRAWAAIEEADRILVM 303 Query: 306 KEINSKKEIS-------FPKNIDFIFIGTKSDLYSTYTE------EYDHLISSFTGEGLE 352 + N P +I I K DL E E + +S+ GL+ Sbjct: 304 VQANEAIHPEDQAILEKMPSHIPVTLIHNKIDLIEKSPELSENDGETEIWLSAKHHLGLD 363 Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAENLRL 411 L +K+ + + + + KRHL L + ++E E +++AE+LR Sbjct: 364 LLKQHLKTEMGYAQTEEGVFM-ARKRHLEALETALHFVETGQQQLEHFAAGELLAEDLRQ 422 Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A +L +ITG + LL IF+ FCIGK Sbjct: 423 AQQALSEITGQFTSDDLLGRIFTSFCIGK 451 >gi|126643000|ref|YP_001085984.1| tRNA modification GTPase TrmE [Acinetobacter baumannii ATCC 17978] Length = 406 Score = 256 bits (654), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 159/410 (38%), Positives = 240/410 (58%), Gaps = 22/410 (5%) Query: 48 ASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRL 107 A R F+ DG I+D+G+++ FP+P SFTGED E HGG + N +L L ++ + Sbjct: 2 AGFRKFYDADGSIMDEGIVLCFPNPHSFTGEDVVELQGHGGPVIQNALLGRLFELGAIA- 60 Query: 108 ANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTH 167 A GEFS RAFENGK+DL++AE++ADLI + ++ R ++ + G S+ ++KL + Sbjct: 61 AKAGEFSMRAFENGKMDLVQAEAIADLIDATSQAAARSAVRSLQGAFSTKINTVLEKLIY 120 Query: 168 IRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227 +R +EA +DF EEE + + ++L + ++ + + + + G+++R G ++VI G Sbjct: 121 LRLHVEAAIDFPEEE-IDFLADGKILALLEDVQQSVHAVQTSARQGQLLREGLQVVIAGK 179 Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKE 287 NAGKSSL NALA + AIVTDI GTTRDVL + L G + ++DTAG+RET DIVEKE Sbjct: 180 PNAGKSSLLNALAGVERAIVTDIAGTTRDVLHEKISLNGLPITLTDTAGLRETGDIVEKE 239 Query: 288 GIKRTFLEVENADLILLLKEINSK------KEISFPKNID---FIFIGTKSDLYSTYTEE 338 GI+R E+E ADL+LL+ ++N + F ++I+ + IG K DL E Sbjct: 240 GIRRAIKEIEQADLLLLVYDLNQGDDPLKLAQEYFSEHIEPRRLMLIGNKCDLTGQSAEI 299 Query: 339 YD-----HLISSFTGE-GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM 392 D H+ S E G++ L++ I + F + + RHL + +T YL Sbjct: 300 SDYQGFRHITVSAKQEMGVQGLVDAITA--HAGFHPEEDTFIARTRHLDAMKRTQLYLAE 357 Query: 393 A--SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A L + G +++AE+LRLA +LG+ITG + LL IF FCIGK Sbjct: 358 AREQLVVFNAG-ELVAESLRLAQNALGEITGDFSADDLLGKIFGSFCIGK 406 >gi|190150819|ref|YP_001969344.1| tRNA modification GTPase TrmE [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307264169|ref|ZP_07545762.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189915950|gb|ACE62202.1| tRNA modification GTPase TrmE [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306870489|gb|EFN02240.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 452 Score = 256 bits (653), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 167/458 (36%), Positives = 256/458 (55%), Gaps = 29/458 (6%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64 K+TI A +T +SI+R+SGP +V + + K+ PR A+ F DG +LD+G Sbjct: 2 KDTIVAQATPIGRGGVSILRISGPLAQEVAKEVLGKELK-PRLANYLPFKDQDGTVLDQG 60 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 + + F +P SFTGED E HGG +++ +L+ + K+ +R+A GEFS +AF N K+D Sbjct: 61 IALFFKAPNSFTGEDVLELQGHGGQVILDILLKRILKIKGIRIARAGEFSEQAFLNDKLD 120 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ADLI + +E R +++ + GE S+ Q +D + ++R+++EA +DF +EE + Sbjct: 121 LAQAEAIADLIDATSEQAARSALKSLQGEFSNKINQLVDSVIYLRTYVEAAIDFPDEE-I 179 Query: 185 QNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 + ++ LNDI+ N + QG I+R G K+VI G NAGKSSL NALA Sbjct: 180 DFLADGKIEGHLNDIIRQLNGVRKEAKQGA---ILREGMKVVIAGRPNAGKSSLLNALAG 236 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 ++ AIVT+I GTTRDVL + ++G + I DTAG+RE D VEK GI+R + E+E AD Sbjct: 237 REAAIVTNIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVEKIGIQRAWDEIEQADH 296 Query: 302 ILLLKEINSKKEISF-----------PKNIDFIFIGTKSDLYSTYT--EEYDHL----IS 344 +LL+ + + +F P+NI I K DL +E D +S Sbjct: 297 VLLMIDSTEQTAEAFKTEWADFLAKLPQNIPVTVIRNKVDLSGEAEGLQELDGFTLIRLS 356 Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGL 402 + T G++ L +K + + + +RHL L +LE L + G Sbjct: 357 AQTKVGVDLLREHLKKSMGYQ-SSTEGGFLARRRHLQALETAAEHLERGHIQLTQFFAG- 414 Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LR+ +L +ITG + LL IFS FCIGK Sbjct: 415 ELLAEELRMVQNALSEITGQFTSDDLLGNIFSSFCIGK 452 >gi|330987014|gb|EGH85117.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. lachrymans str. M301315] Length = 456 Score = 256 bits (653), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 167/461 (36%), Positives = 248/461 (53%), Gaps = 26/461 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 MN +ETI A++T + I+R+SGP + E I + P PR A F G+ Sbjct: 1 MNVPRETIAAIATAQGRGGVGIVRVSGPLASKAAEAIIGRT-PKPRFAHYGPFVDKAGQT 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG V++ +L+ ++ + RLA PGEFS RAF N Sbjct: 60 LDEGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQLGS-RLARPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + + R ++ + G S +KL +R ++EA +DF E Sbjct: 119 DKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSRRVDNLTEKLISLRIYVEAAIDFPE 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + + VLN + ++ ++S+ + + G ++R+G +VI G NAGKSSL NALA Sbjct: 179 EE-IDFLADGHVLNMLDDVRAELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVT+I GTTRDVL + ++G + + DTAG+R+T D VE G++R + AD Sbjct: 238 GREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTQDQVEMIGVQRALKAIGEAD 297 Query: 301 LILLLKEINSKKEI-----------SFPKNIDFIFIGTKSDLYST----YTEEYDHLISS 345 ILL+ + + + P I K+DL T H+ S Sbjct: 298 RILLVVDATAPEAADPFALWPEFLEQRPDPSKVTLIRNKADLSGDPVDLQTSVDGHVTIS 357 Query: 346 FT----GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKD 399 + GEGLE L +K+ + + + S + +RHL L LE A L Sbjct: 358 LSARSGGEGLELLREHLKACMGYE-QTSESSFSARRRHLEALRHASDSLEHGRAQLTLAG 416 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G +++AE+LR A +LG+ITG + LL IFS FCIGK Sbjct: 417 AG-ELLAEDLRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 456 >gi|28896776|ref|NP_796381.1| tRNA modification GTPase TrmE [Vibrio parahaemolyticus RIMD 2210633] gi|153838496|ref|ZP_01991163.1| tRNA modification GTPase TrmE [Vibrio parahaemolyticus AQ3810] gi|260361954|ref|ZP_05774959.1| tRNA modification GTPase TrmE [Vibrio parahaemolyticus K5030] gi|260876535|ref|ZP_05888890.1| tRNA modification GTPase TrmE [Vibrio parahaemolyticus AN-5034] gi|260897408|ref|ZP_05905904.1| tRNA modification GTPase TrmE [Vibrio parahaemolyticus Peru-466] gi|31340459|sp|Q87TR6|MNME_VIBPA RecName: Full=tRNA modification GTPase mnmE gi|28804984|dbj|BAC58265.1| thiophene and furan oxidation protein ThdF [Vibrio parahaemolyticus RIMD 2210633] gi|149748119|gb|EDM58978.1| tRNA modification GTPase TrmE [Vibrio parahaemolyticus AQ3810] gi|308087879|gb|EFO37574.1| tRNA modification GTPase TrmE [Vibrio parahaemolyticus Peru-466] gi|308090361|gb|EFO40056.1| tRNA modification GTPase TrmE [Vibrio parahaemolyticus AN-5034] gi|308114188|gb|EFO51728.1| tRNA modification GTPase TrmE [Vibrio parahaemolyticus K5030] gi|328471230|gb|EGF42132.1| tRNA modification GTPase TrmE [Vibrio parahaemolyticus 10329] Length = 453 Score = 256 bits (653), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 163/454 (35%), Positives = 246/454 (54%), Gaps = 23/454 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVC-EFICKKKKPFPRKASLRYFFGLDGRILDKG 64 +TI A +T + IIR+SGP QV E K KP R A F DG +LD+G Sbjct: 4 DTIVAQATAPGRGGVGIIRVSGPKANQVALEVTGKTLKP--RYAEYLPFQAEDGTVLDQG 61 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 + + FP+P SFTGED E HGG V++ +++ + + +R A PGEFS RAF N K+D Sbjct: 62 IALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILGIAGVRAARPGEFSERAFLNDKMD 121 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ADLI + +E + +++ + G+ S ++ L H+R ++EA +DF EEE + Sbjct: 122 LTQAEAIADLIDASSEEAAKSALQSLQGQFSQRIQTLVESLIHLRIYVEAAIDFPEEE-I 180 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + +V D+ + +++ + + G I+R G K+VI G NAGKSSL NAL+ K+ Sbjct: 181 DFLADGKVAGDLQAIIDNLDAVRKEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKES 240 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIVTDI GTTRDVL + ++G + I DTAG+R+ D VEK GI+R + E+ AD +L Sbjct: 241 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVEKIGIERAWDEIAQADRVLF 300 Query: 305 L-----KEINSKKEI------SFPKNIDFIFIGTKSDLYST------YTEEYDHLISSFT 347 + + KEI P++I I K+D + +S+ T Sbjct: 301 MVDGTTTDATDPKEIWPDFVDRLPESIGMTVIRNKADQTGEDMGICHVNDPTLIRLSAKT 360 Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIA 406 G G++ L N +K + + +RHL L + ++L++ E +I+A Sbjct: 361 GAGVDALRNHLKECMGFS-GNTEGGFMARRRHLDALERAAQHLQIGQEQLEGYMAGEILA 419 Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E LR+ L +ITG + LL IFS FCIGK Sbjct: 420 EELRITQQHLNEITGEFSSDDLLGRIFSSFCIGK 453 >gi|114565212|ref|YP_752726.1| tRNA modification GTPase TrmE [Shewanella frigidimarina NCIMB 400] gi|122298225|sp|Q07VS7|MNME_SHEFN RecName: Full=tRNA modification GTPase mnmE gi|114336505|gb|ABI73887.1| tRNA modification GTPase trmE [Shewanella frigidimarina NCIMB 400] Length = 453 Score = 256 bits (653), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 160/453 (35%), Positives = 253/453 (55%), Gaps = 21/453 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + IIR+SG V I P R A F DG+++D+G+ Sbjct: 4 DTIVAQATAPGRGGVGIIRISGDLATNVATAIIGHV-PKTRYAEYCDFNNADGQVIDQGI 62 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + F P SFTGED E HGG V++ +++ + ++ +R+A PGEFS +AF N K+DL Sbjct: 63 ALFFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVMEIDGIRIARPGEFSEQAFMNDKLDL 122 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E + +++ + GE S + +D++T++R ++EA +DF +EE V Sbjct: 123 TQAEAIADLIDATSEQAAKSALQSLQGEFSKEVHELVDQVTNLRLYVEAAIDFPDEE-VD 181 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S ++ N + + + + + + K G IIR G K+VI G NAGKSSL NALA K+ A Sbjct: 182 FLSDGKIANALYKIISKLDTVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKESA 241 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVT+I GTTRDVL + L+G + I DTAG+R+T D VE+ GI+R + E+ +AD +L + Sbjct: 242 IVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTLDTVEQIGIERAWAEIASADRVLFM 301 Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTY---TEEYD---HLISSFTG 348 + + ++ P + + K+DL TEE + IS+ TG Sbjct: 302 VDGTTTDAVNPHEIWPDFIDRLPAKLGVTVVRNKADLTGETLDKTEEQGSCVYRISAKTG 361 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407 G++EL +KS++ + L + +RHL L +L++ E +++AE Sbjct: 362 LGIDELKQHLKSLMGYQ-SNLEGGFIARRRHLEALELAANHLQLGKEQLEVYLAGELLAE 420 Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LR+ ++L +ITG + LL IF FCIGK Sbjct: 421 ELRMTQMALSEITGKFTSDDLLGKIFGSFCIGK 453 >gi|330800057|ref|XP_003288056.1| hypothetical protein DICPUDRAFT_152248 [Dictyostelium purpureum] gi|325081944|gb|EGC35443.1| hypothetical protein DICPUDRAFT_152248 [Dictyostelium purpureum] Length = 503 Score = 256 bits (653), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 169/483 (34%), Positives = 265/483 (54%), Gaps = 55/483 (11%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLD-GRIL 61 K+TIF +S+G S ++I+R+SGP V + + KK +P R A+L F+ + Sbjct: 29 KDTIFNLSSGVGKSGVAIVRVSGPDSKLVLKELTKKSNIEPKERLATLSTFYHPKTNEQV 88 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121 DKG+ + FPSP SFTGED EFH+HGG AV++ L+ ++ + R + GEF+RRAFENG Sbjct: 89 DKGIFVWFPSPNSFTGEDVVEFHIHGGRAVISETLDAISSVDGTRPSEQGEFTRRAFENG 148 Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181 K+DL + E L+DL+ + T Q++++++ M G + Y L +++EA +DF ++ Sbjct: 149 KMDLTQIEGLSDLLDASTSYQKKIALKQMQGSIGQFYFSLRKDLIRASAYMEAFIDFGDD 208 Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 ++ N + ++ I+ +++ I +H+ G+ GE +R+G I I+G N+GKSSL N L+ Sbjct: 209 AEIDNETVEQSKRSIIAIRDKIQAHLDDGRRGERLRDGASIAIVGPPNSGKSSLINLLSN 268 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENAD 300 + +IV+ I GTTRD++ + LD+ GY V I DTAG+R T+DI+EKEGI+ +D Sbjct: 269 RKASIVSPIAGTTRDIVEVTLDIGGYPVVIGDTAGLRLSTNDIIEKEGIEMAKDRFNQSD 328 Query: 301 LILLLKEINS-------------KKEISFPKNIDFIFIGTKSDLYSTYTEE-YDHL---- 342 + L L + N + ++F N + I I K DL +++ + L Sbjct: 329 IKLFLFDSNQLFNLDNNSNDNELENLLNFIDN-ETIIIFNKFDLIKNSSQDKWSQLKSNI 387 Query: 343 -----------------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP--SHKRHLYHL 383 IS ++ELI+ +K LSN F+ P + R+ HL Sbjct: 388 LEKIKTKNNLTNVQSIEISCNENIKIKELISLLKLNLSNMFEMNDQESPLLTRARYKQHL 447 Query: 384 SQTV----RYLEMASLNEKDCGLDII--AENLRLASVSLGKITGCVDVEQLLDIIFSKFC 437 ++ V RYL C DI+ +E LR A +S+ IT VD+ LLD+IF FC Sbjct: 448 TECVESLDRYLYY-------CDEDIVIASEELRRALLSISAITHPVDLNDLLDVIFRDFC 500 Query: 438 IGK 440 IGK Sbjct: 501 IGK 503 >gi|319788687|ref|YP_004148162.1| tRNA modification GTPase TrmE [Pseudoxanthomonas suwonensis 11-1] gi|317467199|gb|ADV28931.1| tRNA modification GTPase TrmE [Pseudoxanthomonas suwonensis 11-1] Length = 445 Score = 256 bits (653), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 154/446 (34%), Positives = 251/446 (56%), Gaps = 16/446 (3%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A++T + I+RLSGP + +C ++ PR+A +F DG ++D G+ Sbjct: 5 DTIAAIATAPGAGGVGIVRLSGPEALAIAAALCGREA-APRRALRAFFREADGAVIDDGI 63 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 ++ FP P SFTGED AE HG V+ ++E ++ R A PGEFS RAF NGK+DL Sbjct: 64 VLAFPGPHSFTGEDVAELQAHGSPVVLQRLVERCREL-GARQARPGEFSERAFLNGKLDL 122 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 ++AE++ADLI++ R + + G S D L +R +EA +DF +E ++ Sbjct: 123 VQAEAIADLIAASDLRAARAARRSLEGVFSRQVEDASDALLRLRIHVEAAIDFVDEP-IE 181 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 +V + L++++ +++ + G +R+G V+LG NAGKSSL NALA A Sbjct: 182 TLGLPQVATALARLQDELGELLARAERGRRLRDGLHAVLLGPPNAGKSSLLNALAGDARA 241 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IV D+ GTTRDVL + ++G + ++DTAG+RE D +E+EG++R EVE ADL LL+ Sbjct: 242 IVADVAGTTRDVLREVVRIDGLELVLADTAGLREGGDAIEREGMRRARAEVERADLALLV 301 Query: 306 KEINSKKEI-----SFPKNIDF-IFIGTKSDLYSTYTEEYDHLI--SSFTGEGLEELINK 357 + + + +++ ++I K+DL + + I S+ TG+GL+ L Sbjct: 302 LDARAPQADRAALEEAARDVPLKLWIHNKADLLPRLPADGEDAIHVSALTGQGLDRLHAA 361 Query: 358 IKSILSNKFKKLP---FSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASV 414 ++ + ++ + FS + RHL L + + + +A+ + L++ AE LR+A Sbjct: 362 LRRLAASGAPEAAEGEFS--ARARHLEALREALDAIAVAAAELEAGQLELAAEQLRMAHD 419 Query: 415 SLGKITGCVDVEQLLDIIFSKFCIGK 440 ++G +TG + +QLL IFS FCIGK Sbjct: 420 AMGTLTGRLTADQLLGHIFSSFCIGK 445 >gi|238797848|ref|ZP_04641340.1| tRNA modification GTPase mnmE [Yersinia mollaretii ATCC 43969] gi|238718264|gb|EEQ10088.1| tRNA modification GTPase mnmE [Yersinia mollaretii ATCC 43969] Length = 454 Score = 256 bits (653), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 164/454 (36%), Positives = 247/454 (54%), Gaps = 23/454 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + I+R+SG + V + + K P PR A F +DG LD+G+ Sbjct: 5 DTIVAQATPPGRGGVGILRVSGRAAAAVAQAVLGKL-PKPRYADYLPFKDVDGSTLDQGI 63 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + FP P SFTGED E HGG +++ +L+ + +P LR+A PGEFS RAF N K+DL Sbjct: 64 ALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILALPELRIARPGEFSERAFLNDKLDL 123 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E R ++ + G S Q ++ LTH+R ++EA +DF +EE + Sbjct: 124 AQAEAIADLIDASSEQAARSAVNSLQGAFSVRIHQLVEALTHLRIYVEAAIDFPDEE-ID 182 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S ++ + + ++ ++ + G ++R G K+VI G NAGKSSL NALA ++ A Sbjct: 183 FLSDGKIEGQLNGVMAELEQVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAA 242 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+E AD +L + Sbjct: 243 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWNEIEQADRVLFM 302 Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDH---LISSFTG 348 + + P + + K+D+ TE H +S+ TG Sbjct: 303 VDGTTTDATEPAAIWPEFMARLPSTLPITVVRNKADITGETLGLTEVNGHSLIRLSARTG 362 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIA 406 EG++ L N +K + + +RHL L ++L L G +++A Sbjct: 363 EGIDLLRNHLKQSMGFT-SNTEGGFLARRRHLQALETAAQHLVQGHEQLVSAYAG-ELLA 420 Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E LRLA SL +ITG + LL IFS FCIGK Sbjct: 421 EELRLAQQSLSEITGEFSSDDLLGRIFSSFCIGK 454 >gi|238783044|ref|ZP_04627071.1| tRNA modification GTPase mnmE [Yersinia bercovieri ATCC 43970] gi|238716045|gb|EEQ08030.1| tRNA modification GTPase mnmE [Yersinia bercovieri ATCC 43970] Length = 482 Score = 256 bits (653), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 164/454 (36%), Positives = 247/454 (54%), Gaps = 23/454 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + I+R+SG + V + + K P PR A F +DG LD+G+ Sbjct: 33 DTIVAQATPPGRGGVGILRVSGRAAAAVAQAVLGKL-PKPRYADYLPFKDVDGSTLDQGI 91 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + FP P SFTGED E HGG +++ +L+ + +P LR+A PGEFS RAF N K+DL Sbjct: 92 ALYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILALPGLRIARPGEFSERAFLNDKLDL 151 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E R ++ + G S Q ++ LTH+R ++EA +DF +EE + Sbjct: 152 AQAEAIADLIDASSEQAARSAVNSLQGAFSVRIHQLVEALTHLRIYVEAAIDFPDEE-ID 210 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S ++ + + ++ ++ + G ++R G K+VI G NAGKSSL NALA ++ A Sbjct: 211 FLSDGKIEGQLNGVMAELEQVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAA 270 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+E AD +L + Sbjct: 271 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWNEIEQADRVLFM 330 Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYST---YTEEYDH---LISSFTG 348 + + P + + K+D+ TE H +S+ TG Sbjct: 331 VDGTTTDATEPAAIWPEFMARLPSTLPITVVRNKADITGETLGLTEVNGHSLIRLSARTG 390 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIA 406 EG++ L N +K + + +RHL L ++L L G +++A Sbjct: 391 EGIDLLRNHLKQSMGFT-SNTEGGFLARRRHLQALETAAQHLVQGHEQLVSAYAG-ELLA 448 Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E LRLA SL +ITG + LL IFS FCIGK Sbjct: 449 EELRLAQQSLSEITGEFSSDDLLGRIFSSFCIGK 482 >gi|120556798|ref|YP_961149.1| tRNA modification GTPase TrmE [Marinobacter aquaeolei VT8] gi|166200483|sp|A1U7J3|MNME_MARAV RecName: Full=tRNA modification GTPase mnmE gi|120326647|gb|ABM20962.1| tRNA modification GTPase trmE [Marinobacter aquaeolei VT8] Length = 456 Score = 256 bits (653), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 162/460 (35%), Positives = 248/460 (53%), Gaps = 24/460 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M +TI A++T + + I+R+SGP + + + P PR A F G + Sbjct: 1 MQPATDTIAAIATAPGQAGVGIVRVSGPRAMAIARTMLGFE-PKPRYAHYGPFRDRQGEL 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+G+ + FP+P SFTGED E HGG +++ +L E+ + RLA PGEFS RAF N Sbjct: 60 IDEGIGLYFPNPHSFTGEDVFELQGHGGTVILDILLREVCSL-GARLARPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI S +E R ++ M G S ++ +TH+R ++EA +DF E Sbjct: 119 DKLDLAQAEAIADLIESSSEQAARCAVRSMQGVFSKRVDNLVEAITHLRIYVEAAIDFPE 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + + +V +D+ L + + + + G I+R+G K+VI G NAGKSSL NALA Sbjct: 179 EE-IDFLADGKVASDLQGLLEQVQQILGEAQQGTILRDGMKVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVT I GTTRDVL + ++G + I DTAG+R++ D VE+ GI R + E+ AD Sbjct: 238 GREAAIVTAIEGTTRDVLREHIHIDGMPLHIIDTAGLRDSPDEVEQIGIARAWEEIRQAD 297 Query: 301 LILLLKEINSKKEI-----------SFPKNIDFIFIGTKSDL------YSTYTEEYDHLI 343 ILL+ + + + P++ I K DL S + + +I Sbjct: 298 RILLMVDATTTDKTEPHEIWPDFIDQLPRSAPVTVIRNKVDLSGEPLGISAESHQTAPVI 357 Query: 344 --SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401 ++ EGLE L +K + + +RHL L + L + G Sbjct: 358 RLAAKAAEGLEVLREHLKECIGFA-STTEGGFLARRRHLDALERARDSLLQGQTQLEGYG 416 Query: 402 L-DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE+LR A +LG+ITG + ++LL IFS FCIGK Sbjct: 417 AGELLAEDLRAAQDALGEITGHLTPDELLGKIFSSFCIGK 456 >gi|331007811|ref|ZP_08330916.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [gamma proteobacterium IMCC1989] gi|330418378|gb|EGG92939.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [gamma proteobacterium IMCC1989] Length = 471 Score = 256 bits (653), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 168/462 (36%), Positives = 255/462 (55%), Gaps = 28/462 (6%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR-IL 61 + +TI A++T + IIR+SG + E I + + PR A F D + L Sbjct: 14 YSTDTIAAIATAPGRGGVGIIRISGAKALAIGEKISQHRLT-PRYAHYGDFIDPDTQETL 72 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121 D+G+ + FP+P SFTGED E H HGG V++ +L + + LA PGEFS RAF N Sbjct: 73 DQGISLFFPNPHSFTGEDVVELHGHGGPIVLDQLLRVITR-SGATLAKPGEFSERAFLND 131 Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181 K+DL +AE++ADLI + +E R ++ + G S +++LT +R ++EA +DF EE Sbjct: 132 KMDLTQAEAIADLIDANSEQAMRNALNSLQGAFSEQIHTLVEQLTQLRIYVEAAIDFPEE 191 Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 E + + + + + + ++ +Q K G ++R G K+VI G NAGKSSL NALA Sbjct: 192 E-IDFLQDQHIHSQLHDIHRQLNKVFTQAKQGVLVREGMKVVIAGKPNAGKSSLLNALAG 250 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 ++ AIVT+I GTTRDVL + L+G + I DTAG+R ++D+VE+ GI+R ++E+E AD Sbjct: 251 REAAIVTNIAGTTRDVLREHIHLDGMPLHIIDTAGLRSSNDVVEQIGIERAWVEIEQADR 310 Query: 302 ILLL--------------KEINSKKEISFPKNIDFIFIG---TKSDL--YSTYTEEYDHL 342 ILLL EI + + KNID I K D + T D++ Sbjct: 311 ILLLIDSTNYNADTPDINTEIRQFIDDNKHKNIDISRISVICNKIDQSGITPNTSMIDNI 370 Query: 343 ----ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398 +S+ G+E L++ +KS++ K + +RHL L++ L A + Sbjct: 371 PVIYLSAKANTGIELLVSHLKSVMGYK-NTAEGGFTARRRHLDALTRADESLVHAMQQLQ 429 Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE+LRL+ LG+ITG V + LL IFS FCIGK Sbjct: 430 LGAGELLAEDLRLSQQHLGEITGEVSADDLLGKIFSSFCIGK 471 >gi|149190487|ref|ZP_01868758.1| tRNA modification GTPase TrmE [Vibrio shilonii AK1] gi|148835741|gb|EDL52707.1| tRNA modification GTPase TrmE [Vibrio shilonii AK1] Length = 474 Score = 256 bits (653), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 165/454 (36%), Positives = 248/454 (54%), Gaps = 23/454 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + IIR+SGP +V + K PR A F DG LD+G+ Sbjct: 25 DTIVAQATAPGRGGVGIIRVSGPLAAEVALQVTGKTLK-PRYADYLPFKAQDGSELDQGI 83 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + FP+P SFTGED E HGG V++ +++ + +P +R A PGEFS RAF N K+DL Sbjct: 84 ALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILLIPGVRPARPGEFSERAFLNDKMDL 143 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E + +++ + G+ S ++ L H+R ++EA +DF EEE + Sbjct: 144 TQAEAIADLIDASSEEAAKSALQSLQGQFSKRIQVLVESLIHLRIYVEAAIDFPEEE-ID 202 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 + +V D+ + +++ S + G I+R G K+VI G NAGKSSL NAL+ K+ A Sbjct: 203 FLADGKVAGDLQHIIDNLESVRKEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKESA 262 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTDI GTTRDVL + ++G + I DTAG+R+ D VE+ GI+R + E+E AD +L + Sbjct: 263 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWEEIEQADRVLFM 322 Query: 306 -----KEINSKKEI------SFPKNIDFIFIGTKSDLYSTYTEEYDHL-------ISSFT 347 + KEI P +I I K D + T H+ +S+ T Sbjct: 323 VDGTTTDATDPKEIWPDFIDRLPSSIGITVIRNKVD-ETGETLGICHVNDPTLIRLSART 381 Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIA 406 G+G+ L +K+I+ + +RHL L + +L++ E +I+A Sbjct: 382 GKGVPALREHLKAIMGFSGAN-EGGFMARRRHLDALERAAEHLDIGQQQLEGYMAGEILA 440 Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E LR+A L +ITG + LL IFS FCIGK Sbjct: 441 EELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 474 >gi|78486532|ref|YP_392457.1| tRNA modification GTPase TrmE [Thiomicrospira crunogena XCL-2] gi|78364818|gb|ABB42783.1| tRNA modification GTPase trmE [Thiomicrospira crunogena XCL-2] Length = 475 Score = 256 bits (653), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 153/449 (34%), Positives = 250/449 (55%), Gaps = 18/449 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A++T + I+R+SG ++ E + K P PR A F G +G++LD+G+ Sbjct: 31 DTIAAIATAPGRGGVGIVRVSGIKAAEIAEHVLGKC-PKPRYAHYGPFLGAEGQVLDQGI 89 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + FP+P SFTGE+ E HGG ++ +LE + ++ RLA PGEFS++AF N K+DL Sbjct: 90 ALFFPNPHSFTGENVLELQGHGGPVILQWLLERVVQL-GARLAEPGEFSKQAFLNDKLDL 148 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + ++ R ++ + G+ S+ + +++L +R ++EA +DF EEE + Sbjct: 149 AQAEAIADLIDASSQQAARSALRSLQGDFSNQVNELVEQLIQLRIYVEAAIDFPEEE-ID 207 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S +V + + + ++ + G ++R G +VILG NAGKSSL NAL+ ++ A Sbjct: 208 FLSDGKVAGQLQHILEQLHRVLASAQQGVLLREGMSVVILGRPNAGKSSLLNALSGRESA 267 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTDI GTTRD++ ++ ++G + + DTAG+RE D VE+ GI+R + +E AD IL++ Sbjct: 268 IVTDIAGTTRDIVKEEIQIDGMPLHVLDTAGLREATDAVEQIGIQRAWAAIEEADRILVM 327 Query: 306 KEINSKKEI-------SFPKNIDFIFIGTKSDLYSTYTE------EYDHLISSFTGEGLE 352 + N P +I I K DL E E + +S+ GL+ Sbjct: 328 VQANEAIHPEDQAILEKMPSHIPVTLIHNKIDLIEKSPELSENDGETEIWLSAKHHLGLD 387 Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAENLRL 411 L +K+ + + + + KRHL L + ++E E +++AE+LR Sbjct: 388 LLKQHLKTEMGYAQTEEGVFM-ARKRHLEALETALHFVETGQQQLEHFAAGELLAEDLRQ 446 Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A +L +ITG + LL IF+ FCIGK Sbjct: 447 AQQALSEITGQFTSDDLLGRIFTSFCIGK 475 >gi|126176560|ref|YP_001052709.1| tRNA modification GTPase TrmE [Shewanella baltica OS155] gi|125999765|gb|ABN63840.1| tRNA modification GTPase trmE [Shewanella baltica OS155] Length = 479 Score = 256 bits (653), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 162/453 (35%), Positives = 251/453 (55%), Gaps = 21/453 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + IIR+SG V + P R A F G+++D+G+ Sbjct: 30 DTIVAQATAPGRGGVGIIRISGDKASNVAMAVLGHL-PKTRYADYCDFKSASGQVIDQGI 88 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + F P SFTGED E HGG V++ +++ + ++ +R+A PGEFS +AF N K+DL Sbjct: 89 ALFFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVMEVGGIRIAKPGEFSEQAFMNDKLDL 148 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + E + +++ + GE S + +D++T++R ++EA +DF +EE V Sbjct: 149 TQAEAIADLIDATCEQAAKSALQSLQGEFSKEVHELVDQVTNLRLYVEAAIDFPDEE-VD 207 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S ++ N + + + + + K G IIR G K+VI G NAGKSSL NALA K+ A Sbjct: 208 FLSDGKIANALYKIIDKLDLVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKESA 267 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVT+I GTTRDVL + L+G + I DTAG+R+T D VE+ GI+R + E+ +AD +L + Sbjct: 268 IVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTTDTVEQIGIERAWNEINSADRVLFM 327 Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYS---TYTEEYD---HLISSFTG 348 + + + P N+ I K+DL TEE + IS+ TG Sbjct: 328 VDGTTTAAVDPHAIWPDFVDRLPSNLGVTVIRNKADLTGEDLMMTEEQGYSVYRISAKTG 387 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407 G+EEL +KS++ + L + +RHL L +L++ E +++AE Sbjct: 388 LGVEELKQHLKSLMGYQ-SNLEGGFIARRRHLEALELAAGHLQLGKEQLEVYLAGELLAE 446 Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LR+ ++L +ITG + LL IFS FCIGK Sbjct: 447 ELRMCQLALSEITGRFTSDDLLGKIFSSFCIGK 479 >gi|257485604|ref|ZP_05639645.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331011892|gb|EGH91948.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 456 Score = 255 bits (652), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 166/461 (36%), Positives = 248/461 (53%), Gaps = 26/461 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 MN +ETI A++T + I+R+SGP + E I + P PR A F G+ Sbjct: 1 MNVPRETIAAIATAQGRGGVGIVRVSGPLASKAAEAIIGRT-PKPRFAHYGPFVDEAGQT 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG V++ +L+ ++ + RLA PGEFS RAF N Sbjct: 60 LDEGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQLGS-RLARPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + + R ++ + G S +KL +R ++EA +DF E Sbjct: 119 DKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSRRVDNLTEKLISLRIYVEAAIDFPE 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + + VLN + ++ ++S+ + + G ++R+G +VI G NAGKSSL NALA Sbjct: 179 EE-IDFLADGHVLNMLDDVRAELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVT+I GTTRDVL + ++G + + DTAG+R+T D VE G++R + AD Sbjct: 238 GREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTQDQVEMIGVQRALKAIGEAD 297 Query: 301 LILLLKEINSKKEI-----------SFPKNIDFIFIGTKSDLYSTY----TEEYDHLISS 345 ILL+ + + + P I K+DL + T H+ S Sbjct: 298 RILLVVDATAPEAADPFALWPEFLEQRPDPAKVTLIRNKADLSGDHIDLQTSVDGHVTIS 357 Query: 346 FT----GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKD 399 + G GLE L +K+ + + + S + +RHL L LE A L Sbjct: 358 LSARSGGAGLELLREHLKACMGYE-QTSESSFSARRRHLEALRHASDSLEHGRAQLTLAG 416 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G +++AE+LR A +LG+ITG + LL IFS FCIGK Sbjct: 417 AG-ELLAEDLRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 456 >gi|28872710|ref|NP_795329.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. tomato str. DC3000] gi|213968446|ref|ZP_03396589.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. tomato T1] gi|301384266|ref|ZP_07232684.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. tomato Max13] gi|302063883|ref|ZP_07255424.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. tomato K40] gi|302131967|ref|ZP_07257957.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. tomato NCPPB 1108] gi|32171793|sp|Q87TS2|MNME_PSESM RecName: Full=tRNA modification GTPase mnmE gi|28855966|gb|AAO59024.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. tomato str. DC3000] gi|213926734|gb|EEB60286.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. tomato T1] Length = 456 Score = 255 bits (652), Expect = 9e-66, Method: Compositional matrix adjust. Identities = 165/461 (35%), Positives = 249/461 (54%), Gaps = 26/461 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 MN +ETI A++T + I+R+SGP + + I + P PR A F G++ Sbjct: 1 MNVPRETIAAIATAQGRGGVGIVRVSGPLAGKTAQAITGRM-PKPRFAHYGPFADESGQV 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG V++ +L+ ++ + RLA PGEFS RAF N Sbjct: 60 LDEGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQLGS-RLARPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + + R ++ + G S +KL +R ++EA +DF E Sbjct: 119 DKLDLAQAEAIADLIEASSAQAARNALRSLQGVFSQRVDNLTEKLISLRIYVEAAIDFPE 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + + VL + ++ ++S+ + + G ++R+G +VI G NAGKSSL NALA Sbjct: 179 EE-IDFLADGHVLGMLDDVRAELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVT+I GTTRDVL + ++G + + DTAG+R+T D VE G++R + AD Sbjct: 238 GREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTQDQVEMIGVQRALKAIGEAD 297 Query: 301 LILLLKEINSKKEI-----------SFPKNIDFIFIGTKSDL----YSTYTEEYDHLISS 345 ILL+ + + + P I K+DL + T H+ S Sbjct: 298 RILLVVDATAPEAADPFALWPEFLEQRPDPAKVTLIRNKADLSGDSIALQTSADGHVTIS 357 Query: 346 FT----GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKD 399 + GEGLE L +K+ + + + S + +RHL L LE A L Sbjct: 358 LSARSGGEGLELLREHLKACMGYE-QTSESSFSARRRHLEALRHASDSLEHGRAQLTLAG 416 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G +++AE+LR A +LG+ITG + LL IFS FCIGK Sbjct: 417 AG-ELLAEDLRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 456 >gi|241781518|ref|XP_002400281.1| GTPase mss1/trme, putative [Ixodes scapularis] gi|215510712|gb|EEC20165.1| GTPase mss1/trme, putative [Ixodes scapularis] Length = 382 Score = 255 bits (652), Expect = 9e-66, Method: Compositional matrix adjust. Identities = 156/382 (40%), Positives = 223/382 (58%), Gaps = 30/382 (7%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD-GRILDKGL 65 TI+A+S+GA+ SA++ IR+SGP+ V + + K+ PRKA LR + G LD + Sbjct: 1 TIYALSSGAVRSALATIRVSGPNTASVLRRMARIKRAAPRKALLRRLIHPESGVHLDTAI 60 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR---AFENGK 122 +I FPSP S+TGED E HVHGG AVVNG+L+ L++M +LR A PGEF++R AF NGK Sbjct: 61 VIWFPSPRSYTGEDCCELHVHGGAAVVNGVLKALSEMEDLRQAQPGEFTQRQVSAFLNGK 120 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 +DL E E LADL+ +ETE QR ++ M G+LS LY W+D L + IEA +DFSE++ Sbjct: 121 MDLAEVEGLADLLQAETEAQRMQALAQMEGDLSKLYRGWMDNLKKCLANIEAFIDFSEDQ 180 Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 + L +I H+S G+ GE +R G K+ I+G +N GKSSLFNAL ++ Sbjct: 181 GIDEAILGSAAAQAKRLAKEIQDHLSDGRRGERLRGGVKVAIVGRTNVGKSSLFNALCRR 240 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 D AIV+ I GTTRDV+ LD+ GY DTAG+R ++D VE EG+ R ADL Sbjct: 241 DAAIVSPIAGTTRDVVESPLDIGGYPAVFCDTAGLRTSEDPVETEGVLRARRWASAADLA 300 Query: 303 LLLKEIN-----SKKEISFPKNID----------FIFIGTKSDLYSTYTE---------- 337 L++ + + S ++D +F+ K+DL S Sbjct: 301 LVVADCRELLCADGADSSVEAHLDQLGVEPCPGGLLFVLNKTDLLSQEDRALLRERLAGG 360 Query: 338 EYDHLISSF-TGEGLEELINKI 358 E+D + +S T EG+ +L+ ++ Sbjct: 361 EHDCVFTSCATHEGIADLVARL 382 >gi|119471653|ref|ZP_01614038.1| tRNA modification GTPase [Alteromonadales bacterium TW-7] gi|119445432|gb|EAW26719.1| tRNA modification GTPase [Alteromonadales bacterium TW-7] Length = 454 Score = 255 bits (652), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 168/460 (36%), Positives = 251/460 (54%), Gaps = 33/460 (7%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64 ++TI A +T + IIR+SG V E + K P R A F L+G LD+G Sbjct: 4 QDTIAAQATAPGRGGVGIIRVSGSLAKSVAEKVIGKI-PKVRYADYVPFKNLNGDQLDQG 62 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 + I F P SFTGED E HGG V++ +L+E++K+ ++RLA PGEFS RAF N K+D Sbjct: 63 IAIYFAGPNSFTGEDVLELQGHGGPVVLDMLLKEISKIESVRLAKPGEFSERAFMNDKLD 122 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE+++DLI++ +E + +++ + GE S ++K+ H+R ++EA +DF +EE + Sbjct: 123 LTQAEAISDLINATSEQAAKSALQSLQGEFSKHIETLVEKVIHLRMYVEAAIDFPDEE-I 181 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 S +V D+ + N +++ Q K G I+R G ++VI G NAGKSSL NALA ++ Sbjct: 182 DFLSDGKVSGDLDAIINQLNTVTDQAKQGSIMREGMRVVIAGRPNAGKSSLLNALAGREA 241 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIVT+I GTTRDVL + ++G + I DTAG+RE+ D VE+ GI+R + E+ AD +L Sbjct: 242 AIVTEIAGTTRDVLREHIHIDGMPLHIIDTAGLRESPDRVEQIGIERAWDEINQADRVLF 301 Query: 305 L-----------KEINSKKEISFPKNIDFIFIGTKSDLYSTY-----TEEYDHL-ISSFT 347 + +I + PK + I K+DL ++Y + +S+ Sbjct: 302 MLDGTDTVDTDPHKIWPEFMAKLPKGMGVTVIRNKADLSGDIVGLDENQQYPVISLSAKN 361 Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHL-------YHLSQTVRYLEMASLNEKDC 400 EG+E + +K+ + + +RHL YHL LEM E Sbjct: 362 AEGIELVREHLKACIGFD-GATEGGFMARRRHLDALESAAYHLDTGKTQLEMHVAGE--- 417 Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 I+AE LRL L +ITG + LL IFS FCIGK Sbjct: 418 ---ILAEELRLTQQFLNEITGEFTSDDLLGKIFSSFCIGK 454 >gi|332308614|ref|YP_004436465.1| tRNA modification GTPase TrmE [Glaciecola agarilytica 4H-3-7+YE-5] gi|332175943|gb|AEE25197.1| tRNA modification GTPase TrmE [Glaciecola agarilytica 4H-3-7+YE-5] Length = 460 Score = 255 bits (652), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 157/459 (34%), Positives = 254/459 (55%), Gaps = 29/459 (6%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63 +++TI A +T + + I+R+SG +V E I P R A F G LD+ Sbjct: 9 DQDTIVAQATASGRGGVGIVRVSGTLAAKVAEQIIGHVPPV-RNAQYVPFVSNTGEALDQ 67 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 G+ + F +P SFTGED E HGG V++ +++ ++P++RLA PGEFS RA+ N K+ Sbjct: 68 GIALYFKAPHSFTGEDVLELQGHGGQVVLDMLIKATLQIPDVRLARPGEFSERAYLNDKL 127 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL +AE++ADLI + +E R ++ + GE S+ ++ LTH+R ++EA +DF +EE Sbjct: 128 DLAQAEAIADLIDASSEQAARGALRSLQGEFSTQINHLVELLTHLRIYVEAAIDFPDEE- 186 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 + S +V ND+ + +S+ ++ + G ++R G ++VI G NAGKSSL NALA +D Sbjct: 187 IDFLSDGKVQNDLSAITAQLSAVKNKAQQGSLLREGMRVVIAGRPNAGKSSLLNALAGRD 246 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303 AIVT I GTTRDVL + ++G + I DTAG+R++ D VE+ GI+R + E+E AD +L Sbjct: 247 AAIVTAIAGTTRDVLKEHIHIDGMPLHIIDTAGLRDSSDEVERIGIERAWQEIEQADRVL 306 Query: 304 LLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTYTEEYDH------LISSF 346 + + +E P + I K+DL + ++ +S+ Sbjct: 307 FMLDSTETQESDPYKIWPDFMQRLPDKMGLTVIRNKADLSGESIGKVEYKGYPVFQLSAS 366 Query: 347 TGEGLEELINKIKSIL----SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCG 401 +G++ L +K + SN+ + + + +RH+ + + +L + E + Sbjct: 367 HKQGIDVLAEHLKECMGFHSSNEGQFI-----ARRRHIDAIERAEEHLLLGKQQLEDNLA 421 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LRLA L +ITG + LL IFS FCIGK Sbjct: 422 GELLAEELRLAQSYLSEITGEFSSDDLLGKIFSSFCIGK 460 >gi|116074031|ref|ZP_01471293.1| tRNA modification GTPase [Synechococcus sp. RS9916] gi|116069336|gb|EAU75088.1| tRNA modification GTPase [Synechococcus sp. RS9916] Length = 463 Score = 255 bits (652), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 159/458 (34%), Positives = 254/458 (55%), Gaps = 30/458 (6%) Query: 6 ETIFAVSTGALPS--AISIIRLSGPSCFQVCEFICKKKKPFPRK---ASLRYFFG----L 56 +TI AV+T P I++IRLSGP QV + I FP + AS R +G Sbjct: 13 DTIVAVATAVAPGQGGIAVIRLSGPQAQQVVQTIAH----FPGQQEWASHRVLYGHVLAA 68 Query: 57 DG-RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 DG LD+ L++V +P SFT ED E H HGG+ V +L + + P +R A PGEFS+ Sbjct: 69 DGVERLDEVLVLVMQAPRSFTAEDVVEIHCHGGVIAVQRVLARVLEQPGVRRALPGEFSQ 128 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RA NG++DL AE++ DL+++ ++ +L+M G+ G + G ++L S +EA Sbjct: 129 RAVLNGRLDLTRAEAITDLVAARSQRAAQLAMAGLDGGIQRRIGALRERLLDQLSELEAR 188 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +DF EED+ +L ++L +++ + ++ G+ G+ +R G ++ ++G N GKSSL Sbjct: 189 VDF--EEDLPPLDGPALLRELLAVRDALLELVADGERGDALRTGLRVALVGRPNVGKSSL 246 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N L++++ AIVTD+PGTTRD+L ++ LEG + + DTAGIR T D VE+ GI R+ Sbjct: 247 LNRLSRRERAIVTDLPGTTRDLLESEIVLEGVPITLLDTAGIRVTTDAVEQLGIARSHDA 306 Query: 296 VENADLILLLKEINSKKEIS-------FPKNIDFIFIGTKSDLYSTYTEE-----YDHLI 343 + +ADL+LLL +++ P+ ++ + +G K+DL + E D + Sbjct: 307 LASADLVLLLFDLSEGWTAEDQALLARIPEGVEHLLVGNKADLAAPVQAEGRPLAVDVQL 366 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGL 402 S+ TG+G EL+ + + P + ++R + + L+ + + + Sbjct: 367 SAQTGDGEAELVQAMLR-RCGALSEQPLLLALNQRQVDLAAAAAAALQRSEEVAAQGLPW 425 Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D +LR A SLG+ITG E +LD IFS+FCIGK Sbjct: 426 DFWTIDLRQAIQSLGEITGEELTESVLDRIFSRFCIGK 463 >gi|153830815|ref|ZP_01983482.1| tRNA modification GTPase TrmE [Vibrio cholerae 623-39] gi|148873699|gb|EDL71834.1| tRNA modification GTPase TrmE [Vibrio cholerae 623-39] Length = 453 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 160/453 (35%), Positives = 250/453 (55%), Gaps = 21/453 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + IIR+SGP V + + + PR A F +G+ LD+G+ Sbjct: 4 DTIVAQATAPGRGGVGIIRVSGPLAAHVAQTVTGRTL-RPRYAEYLPFTDENGQQLDQGI 62 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + FP+P SFTGED E HGG V++ ++ + ++ +R A PGEFS RAF N K+DL Sbjct: 63 ALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQINGVRPARPGEFSERAFLNDKMDL 122 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E + +++ + GE S ++ L H+R ++EA +DF EEE + Sbjct: 123 TQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPEEE-ID 181 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 + +V D+ + +++++ + G I+R G K+VI G NAGKSSL NAL+ K+ A Sbjct: 182 FLADGKVSADLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKESA 241 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTDI GTTRDVL + ++G + I DTAG+R+ D VEK GI+R + E+ AD +L + Sbjct: 242 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDAVEKIGIERAWEEIRQADRVLFM 301 Query: 306 -----KEINSKKEI------SFPKNIDFIFIGTKSD-----LYSTYTEEYDHL-ISSFTG 348 E + ++I P+NI I K+D L + + + +S+ TG Sbjct: 302 VDGTTTEATNPQDIWPDFVDRLPENIGITVIRNKADQTGEPLGICHVNQPTLIRLSAKTG 361 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407 G++ L +K + + + +RHL L + +L++ E +I+AE Sbjct: 362 HGVDALRQHLKECMGFAGNQ-EGGFMARRRHLDALERAAEHLDIGQQQLEGYMAGEILAE 420 Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LR+A L +ITG + LL IFS FCIGK Sbjct: 421 ELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 453 >gi|262167093|ref|ZP_06034808.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae RC27] gi|262024479|gb|EEY43165.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae RC27] Length = 453 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 161/453 (35%), Positives = 248/453 (54%), Gaps = 21/453 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + IIR+SGP V + + + PR A F DG+ LD+G+ Sbjct: 4 DTIVAQATALGRGGVGIIRVSGPLAAHVAQTVTGRTL-RPRYAEYLPFTDEDGQQLDQGI 62 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + FP+P SFTGED E HGG V++ ++ + ++ +R A PGEFS RAF N K+DL Sbjct: 63 ALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIKGVRPARPGEFSERAFLNDKMDL 122 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E + +++ + GE S ++ L H+R ++EA +DF EEE + Sbjct: 123 TQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPEEE-ID 181 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 + +V D+ + +++ + + G I+R G K+VI G NAGKSSL NAL+ K+ A Sbjct: 182 FLADGKVSADLQTIIDNLVAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKESA 241 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTDI GTTRDVL + ++G + I DTAG+R+ D VEK GI+R + E+ AD +L + Sbjct: 242 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDAVEKIGIERAWEEIRQADRVLFM 301 Query: 306 -----KEINSKKEI------SFPKNIDFIFIGTKSD-----LYSTYTEEYDHL-ISSFTG 348 E ++I P+NI I K+D L + + + +S+ TG Sbjct: 302 VDGTTTEATDPQDIWPDFVDKLPENIGITVIRNKADQTGEPLGICHVNQPTLIRLSAKTG 361 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407 +G++ L +K + + + +RHL L + +L + E +I+AE Sbjct: 362 QGVDALRQHLKECMGFSGNQ-EGGFMARRRHLDALERAAEHLAIGQQQLEGYMAGEILAE 420 Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LR+A L +ITG + LL IFS FCIGK Sbjct: 421 ELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 453 >gi|312964013|ref|ZP_07778484.1| tRNA modification GTPase TrmE [Pseudomonas fluorescens WH6] gi|311282048|gb|EFQ60658.1| tRNA modification GTPase TrmE [Pseudomonas fluorescens WH6] Length = 456 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 163/461 (35%), Positives = 250/461 (54%), Gaps = 26/461 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+ +ETI AV+T + I+R+SGP + I ++ PR A F D + Sbjct: 1 MSAPRETIAAVATAQGRGGVGIVRISGPLAGHAAKAISGRELK-PRYAHYGPFLDADESV 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+GL + FP P SFTGED E HGG V++ +L+ ++ RLA PGEFS RAF N Sbjct: 60 LDEGLTLYFPGPNSFTGEDVLELQGHGGPVVLDMLLQRCLQL-GCRLARPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + + R ++ + G S ++L +R ++EA +DF E Sbjct: 119 DKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSLRVHNLTEQLISLRIYVEAAIDFPE 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + + VL + +++++S+ + + G ++R+G +VI G NAGKSSL NALA Sbjct: 179 EE-IDFLADGHVLTMLDKVRDELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVT+I GTTRD+L + ++G + + DTAG+R+TDD VEK G++R + AD Sbjct: 238 GREAAIVTEIAGTTRDILREHIHIDGMPLHVVDTAGLRDTDDQVEKIGVERALKAIGEAD 297 Query: 301 LILLLKEINSKKEI-----------SFPKNIDFIFIGTKSDLY----STYTEEYDHLISS 345 +LL+ + + + + P I K+DL + T H+ S Sbjct: 298 RVLLVVDATAPEAVDPFALWPEFLEQRPDPAKVTLIRNKADLTGEAIALATSADGHVTIS 357 Query: 346 FT----GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKD 399 + G+GLE L + +K+ + + + S + +RHL L LE A L Sbjct: 358 LSAKSAGDGLELLRDHLKACMGYE-QTSESSFSARRRHLEALRHASAALEHGRAQLTLAG 416 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G +++AE+LR A LG+ITG + LL IFS FCIGK Sbjct: 417 AG-ELLAEDLRQAQQLLGEITGAFSSDDLLGRIFSSFCIGK 456 >gi|113460278|ref|YP_718336.1| tRNA modification GTPase TrmE [Haemophilus somnus 129PT] gi|122945114|sp|Q0I0Z2|MNME_HAES1 RecName: Full=tRNA modification GTPase mnmE gi|112822321|gb|ABI24410.1| tRNA modification GTPase trmE [Haemophilus somnus 129PT] Length = 452 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 163/454 (35%), Positives = 258/454 (56%), Gaps = 22/454 (4%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64 ++TI A +T + I+R+SGP QV E + K PR A+ F DG +LD+G Sbjct: 3 RDTIVAQATPIGRGGVGILRVSGPLAQQVAEQVLGKTLT-PRMANYLPFKDSDGTVLDQG 61 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 + + F +P SFTGED E HGG V++ +L+ + ++ +RLA PGEFS +AF N K+D Sbjct: 62 IALYFKAPNSFTGEDVLELQGHGGQIVMDLLLKRILQIDGIRLARPGEFSEQAFLNDKLD 121 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ADLI + +E R +++ + GE S+ + +D + ++R+++EA +DF +EE + Sbjct: 122 LAQAEAIADLIEASSEQAARSALKSLQGEFSNKINELVDSVIYLRTYVEAAIDFPDEE-I 180 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + ++ + + ++ ++ K G I+R G K+VI G NAGKSSL N LA ++ Sbjct: 181 DFLADGKIETHLREIIAKLAKVKNEAKQGAILREGMKVVIAGRPNAGKSSLLNTLAGREA 240 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIVTDI GTTRDVL + ++G + I DTAG+R+ D VEK GI+R + E+E AD ILL Sbjct: 241 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDATDEVEKIGIRRAWDEIEQADRILL 300 Query: 305 LKE----------INSKKEISFPKNIDFIFIGTKSDLY--STYTEEYDHL----ISSFTG 348 + + + S+ P +I + K+DL + +E + L +S+ T Sbjct: 301 ILDSTENQVELDLVQSEFMAKLPPHIPLTIVRNKADLSGEAEVLDEQNGLAVISLSAKTQ 360 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDIIA 406 +G++ L +K + + + +RHL L Q +L+ + L E G +++A Sbjct: 361 KGVDLLRQHLKQSMGYQVCT-EGGFLARRRHLEALEQADIHLQAGLIQLTEFYAG-ELVA 418 Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E LR+A L +ITG + LL IFS FCIGK Sbjct: 419 EELRIAQHHLSEITGQFTSDDLLGNIFSSFCIGK 452 >gi|332967862|gb|EGK06958.1| tRNA modification GTPase TrmE [Kingella kingae ATCC 23330] Length = 459 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 161/441 (36%), Positives = 242/441 (54%), Gaps = 24/441 (5%) Query: 20 ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGED 79 + +IR+SG + I K P PR A F G +D GLL+ F +P SFTGED Sbjct: 23 VGVIRISGKDLLPFAQHITGGKTPKPRTALYTDFVDQHGNAIDNGLLLYFAAPASFTGED 82 Query: 80 SAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET 139 E HGG V+ +L+ ++ R+A GEF++RAF N K+DL +AES+ADLI + + Sbjct: 83 VIELQGHGGQIVLQMLLQRCLEL-GARIAEAGEFTKRAFLNNKLDLAQAESVADLIDASS 141 Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFL 199 + R+++ + G S +D L +R +EA LDF EEE + + + + L Sbjct: 142 QAAARMAVRSLKGAFSQHIHSLVDDLITLRMLVEATLDFPEEE-IDFLEAADAKGKLARL 200 Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259 + +S+ + Q G I+R G +V++G N GKSSL NALA DVAIVT+I GTTRD + Sbjct: 201 QAQLSTVLQQAGQGAILREGMNVVLVGAPNVGKSSLLNALAGDDVAIVTNIAGTTRDTVR 260 Query: 260 IDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL----KEINSKKEI- 314 + L+G + I+DTAG+R+TDD+VEK GI+R+ V+NAD+ L+L + IN + Sbjct: 261 EQITLDGVPIHITDTAGLRQTDDVVEKIGIERSEKAVQNADVALILIDPAEGINPTTQAI 320 Query: 315 --SFPKNIDFIFIGTKSDL-----------YSTYTEEYDHLI--SSFTGEGLEELINKIK 359 P ++ I + K DL + D LI S+ TG GL+ L + Sbjct: 321 LDKLPTSLQRIEVHNKIDLRDESASLHNESAGCFLSGADVLIKLSAKTGAGLDLLKQTLL 380 Query: 360 SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKI 419 + + + + + RH++ L LE A+L + L+++AE+LRLA V+ +I Sbjct: 381 DAIGWQGESEGLFL-ARTRHIHALQAAQVELENAALCSNN-QLELLAEHLRLAQVACNEI 438 Query: 420 TGCVDVEQLLDIIFSKFCIGK 440 TG + LL +IFS+FCIGK Sbjct: 439 TGEFTADDLLGVIFSRFCIGK 459 >gi|190171190|gb|ACE63665.1| ThdF [Enterobacter cancerogenus] Length = 439 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 157/435 (36%), Positives = 240/435 (55%), Gaps = 23/435 (5%) Query: 18 SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77 + I+R+SG +V E + K P PR A F DG LD+G+ + FP P SFTG Sbjct: 9 GGVGILRISGLKAREVAEAVLGKL-PKPRYADYLPFKDADGTSLDQGIALWFPGPNSFTG 67 Query: 78 EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137 ED E HGG +++ +L+ + +P LR+A PGEFS RAF N K+DL +AE++ADLI + Sbjct: 68 EDVLELQGHGGPVILDLLLKRILTLPGLRIAKPGEFSERAFLNDKLDLAQAEAIADLIDA 127 Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197 +E R ++ + G S+ ++ LTH+R ++EA +DF +EE + S ++ + Sbjct: 128 SSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE-IDFLSDGKIEAQLN 186 Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257 + ND+ + ++ + G ++R G K+VI G NAGKSSL NALA ++ AIVTDI GTTRDV Sbjct: 187 QVMNDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDV 246 Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS-- 315 L + ++G + I DTAG+R+ D VE+ GI+R + E+E AD +L + + + + Sbjct: 247 LREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPA 306 Query: 316 ---------FPKNIDFIFIGTKSDLYSTYTEEYD---H---LISSFTGEGLEELINKIKS 360 P + + K+D+ D H +S+ TGEG+E L N +K Sbjct: 307 EIWPDFIARLPAKLPITVVRNKADVTGETLGISDVNGHSLIRLSARTGEGVEALRNHLKQ 366 Query: 361 ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSLGK 418 + + + +RHL L + R+LE A L G +++AE LRLA +L + Sbjct: 367 SMGFD-TSMEGGFLARRRHLQALEEAARHLEQGKAQLIGAWAG-ELLAEELRLAQQNLSE 424 Query: 419 ITGCVDVEQLLDIIF 433 ITG + LL IF Sbjct: 425 ITGEFTSDDLLGRIF 439 >gi|77461959|ref|YP_351466.1| tRNA modification GTPase TrmE [Pseudomonas fluorescens Pf0-1] gi|123602666|sp|Q3K429|MNME_PSEPF RecName: Full=tRNA modification GTPase mnmE gi|77385962|gb|ABA77475.1| putative tRNA modification GTPase [Pseudomonas fluorescens Pf0-1] Length = 456 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 164/461 (35%), Positives = 254/461 (55%), Gaps = 26/461 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+ +ETI AV+T + I+R+SGP + I ++ PR A FF + ++ Sbjct: 1 MSAPRETIAAVATAQGRGGVGIVRISGPLASVAAKAISGRELK-PRFAHYGPFFSDNQQV 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+GL + FP P SFTGED E HGG V++ +L+ ++ RLA PGEFS RAF N Sbjct: 60 LDEGLALYFPGPNSFTGEDVLELQGHGGPIVLDMLLKRCLEL-GCRLARPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + + R ++ + G S ++L +R ++EA +DF E Sbjct: 119 DKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSQRVHNLTEQLIGLRIYVEAAIDFPE 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + + VL+ + ++N++S+ + + G ++R+G +VI G NAGKSSL NALA Sbjct: 179 EE-IDFLADGHVLSMLDKVRNELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVT+I GTTRD+L + ++G + + DTAG+R+TDD VEK G++R + AD Sbjct: 238 GREAAIVTEIAGTTRDILREHIHIDGMPLHVVDTAGLRDTDDHVEKIGVERALKAIGEAD 297 Query: 301 LILLLKEINSKKEI-----------SFPKNIDFIFIGTKSDLY----STYTEEYDHLISS 345 +LL+ + + + + P I K+DL + + H+ S Sbjct: 298 RVLLVVDATAPEAADPFALWPEFLETRPDPAKVTLIRNKADLTGEPIALEVSDDGHVTIS 357 Query: 346 FT----GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKD 399 + GEGL+ L + +K+ + + + S + +RHL L LE A L Sbjct: 358 LSAKSAGEGLDLLRDHLKACMGYE-QTSESSFSARRRHLEALRHASDALEHGRAQLTLAG 416 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G +++AE+LR A SLG+ITG + LL IFS FCIGK Sbjct: 417 AG-ELLAEDLRQAQQSLGEITGAFSSDDLLGRIFSSFCIGK 456 >gi|289548080|ref|YP_003473068.1| tRNA modification GTPase TrmE [Thermocrinis albus DSM 14484] gi|289181697|gb|ADC88941.1| tRNA modification GTPase TrmE [Thermocrinis albus DSM 14484] Length = 450 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 170/454 (37%), Positives = 258/454 (56%), Gaps = 18/454 (3%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQ-VCEFICKKKKPFPRKASLRYFFGLDGR 59 M ++E I A++T SAI ++RLSG + + F+ K PR A L +GR Sbjct: 1 MIRQREPIVALATPYGESAIGVLRLSGKGVLEKIKPFLKLKGAVKPRYAHLVTLVDEEGR 60 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 +D+G+L+ +PSP+S+TGED E +HG +++ LE L +RLA PGEF+RRAF Sbjct: 61 EIDEGILVFYPSPKSYTGEDMIELSLHGNPLILHRALE-LFLSAGIRLAEPGEFTRRAFL 119 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NGK+DLL+AE++ADLI + TE+ R ++ + GELS + +L + +++EAD++FS Sbjct: 120 NGKMDLLQAEAVADLIGARTELAVRCALRQLRGELSDRIERIRSQLLELIAYVEADIEFS 179 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 E+ D+ S +E+L + L D+ ++ ++G +R G + I+G N GKSSLFNAL Sbjct: 180 EQ-DIPTLSREEILKRLEDLIKDLEDLLATARVGNFLRKGLNLAIVGKPNVGKSSLFNAL 238 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 AIVTDIPGTTRD L ++ G + + DTAGIR T D VE+ G++R+ ++ +A Sbjct: 239 LGSQRAIVTDIPGTTRDFLQEQWNIGGIPINLVDTAGIRTTTDPVEQMGVQRSIEKLGSA 298 Query: 300 DLILLLKEINSKKE------ISFPKNIDFIFIGTKSDL-----YSTYTEEYDHLISSFTG 348 ++LL+ + + E S K+ D I + K DL + E+ ++S+ TG Sbjct: 299 HIVLLVVDGSKPLEEEDLSIYSMVKDKDHIVVLNKKDLGVCEDTAKAFPEF-VMVSAKTG 357 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRH--LYHLSQTVRYLEMASLNEKDCGLDIIA 406 +GLE+L +I + + SI RH L S +V L L E+D +I+ Sbjct: 358 DGLEDLRKEILR-RAGFYTAEGGSIYVSARHANLLQNSLSVIKLVYQQLREQDISPEILM 416 Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LR A L ++ G V E +LD IFS FCIGK Sbjct: 417 LYLREAVHYLEEVIGTVTTEDVLDSIFSSFCIGK 450 >gi|40063333|gb|AAR38151.1| tRNA modification GTPase TrmE [uncultured marine bacterium 578] Length = 449 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 174/455 (38%), Positives = 251/455 (55%), Gaps = 27/455 (5%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRY---FFGLDGR 59 H+ ETI A++T S I ++R+SGP + + I +K KA Y F+ Sbjct: 5 HKVETICALATAIGQSGIGVVRVSGP----LSKAIGQKLLHIELKARHAYYGSFYDKGSN 60 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 +DKG+ I FP P S+TGED EF HGG++V+ +LE R A PGEF++RAF Sbjct: 61 KIDKGVSIFFPGPNSYTGEDVIEFQGHGGMSVLRKLLET-TTFFGARHAEPGEFTKRAFL 119 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NGK+DL++AE++ DLI S +E ++ ++GE S + LT +R F+EA +DFS Sbjct: 120 NGKMDLVQAEAVQDLIQSSSEQSALSAVRSLTGEFSEKINHLLADLTSLRVFVEATIDFS 179 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 +EE + S EV + LKN + + G I+R+G + I G NAGKSSL NAL Sbjct: 180 DEE-IDFLESHEVSVKLQTLKNLLLEILESANQGAILRDGLYVAIAGKPNAGKSSLLNAL 238 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 K+ AIVTDI GTTRDVL + ++G + I DTAG+ +++I+E+EGI+R E+ NA Sbjct: 239 TKQPSAIVTDIAGTTRDVLKETIHIDGMPLHIIDTAGLHNSNNIIEQEGIRRAHTEINNA 298 Query: 300 DLILLLKEINSK-KEIS-FP---KNIDFIFIGTKSDLYSTYTE--EYDHL----ISSFTG 348 D++LL+ + K + S P KN I I K DL E E H +S+ G Sbjct: 299 DVVLLVYDAKDKLADFSILPEAVKNKPIICIRNKIDLLKAKAEIKEVKHQTEVSLSAKNG 358 Query: 349 EGLEELINKIKSILSNKFKKLPFS---IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDII 405 +G I+ ++ LS P + KRH+ + T+ Y+ A + +++ Sbjct: 359 DG----IDLLRQALSEAAGYKPDGEGVFLARKRHILSIELTLNYVNSAIEQLEGGASELV 414 Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 AE+LR A +SLG ITG + LL IFS FCIGK Sbjct: 415 AEDLRQAGMSLGTITGEFSSDDLLGEIFSSFCIGK 449 >gi|163803610|ref|ZP_02197476.1| tRNA modification GTPase TrmE [Vibrio sp. AND4] gi|159172604|gb|EDP57462.1| tRNA modification GTPase TrmE [Vibrio sp. AND4] Length = 453 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 165/457 (36%), Positives = 251/457 (54%), Gaps = 29/457 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVC-EFICKKKKPFPRKASLRYFFGLDGRILDKG 64 +TI A +T + IIR+SGP QV E KK KP R A F DG +LD+G Sbjct: 4 DTIVAQATAPGRGGVGIIRVSGPKANQVALEVTGKKLKP--RYAEYLPFQAGDGTVLDQG 61 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 + + FP+P SFTGED E HGG V++ +++ + + ++R A PGEFS RAF N K+D Sbjct: 62 IALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILGINDVRAARPGEFSERAFLNDKMD 121 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ADLI + +E + +++ + G+ S ++ L H+R ++EA +DF EEE + Sbjct: 122 LTQAEAIADLIDASSEEAAKSALQSLQGQFSQRIQTLVESLIHLRIYVEAAIDFPEEE-I 180 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + +V D+ + +++++ + G I+R G K+VI G NAGKSSL NAL+ K+ Sbjct: 181 DFLADGKVSGDLQAIIDNLNAVRKEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKES 240 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIVTDI GTTRDVL + ++G + I DTAG+R+ D VEK GI+R + E+ AD +L Sbjct: 241 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVEKIGIERAWDEIAQADRVLF 300 Query: 305 L-----KEINSKKEI------SFPKNIDFIFIGTKSDLYSTYTEEYD--HL-------IS 344 + + + K+I P +I I K+D EE H+ +S Sbjct: 301 MVDGTTTDATNPKDIWPDFVDRLPNSIGMTVIRNKADQTG---EEMGICHVNDPTLIRLS 357 Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLD 403 + TG G++ L +K + + +RHL L + ++L++ E + Sbjct: 358 AKTGTGVDALRTHLKECMGFS-GNTEGGFMARRRHLDSLERAAQHLQIGQEQLEGYMAGE 416 Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 I+AE LR+ L +ITG + LL IFS FCIGK Sbjct: 417 ILAEELRITQQHLNEITGEFSSDDLLGRIFSSFCIGK 453 >gi|152979629|ref|YP_001345258.1| tRNA modification GTPase TrmE [Actinobacillus succinogenes 130Z] gi|205829052|sp|A6VQS6|MNME_ACTSZ RecName: Full=tRNA modification GTPase mnmE gi|150841352|gb|ABR75323.1| tRNA modification GTPase TrmE [Actinobacillus succinogenes 130Z] Length = 452 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 168/458 (36%), Positives = 254/458 (55%), Gaps = 29/458 (6%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64 KETI A +T + I+R+SGP V + + K PR A+ F DG LD+G Sbjct: 2 KETIVAQATPIGRGGVGILRVSGPLAADVAKAVVGKALK-PRFANYLPFKDEDGTTLDQG 60 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 + + F SP SFTGED E HGG V++ +L+ + ++ +RLA PGEFS +AF N K+D Sbjct: 61 IALFFQSPNSFTGEDILELQGHGGQVVLDLLLKRILQVNGVRLARPGEFSEQAFLNDKLD 120 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ADLI + +E R +++ + GE S+ Q +D + ++R+++EA +DF +EE + Sbjct: 121 LAQAEAIADLIDASSEQAARSALKSLQGEFSNKVNQLVDGVIYLRTYVEAAIDFPDEE-I 179 Query: 185 QNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 + ++ LNDI+ + S+ K G I+R G K+VI G NAGKSSL NALA Sbjct: 180 DFLADGKIEGHLNDIIAQLERVR---SEAKQGSILREGMKVVIAGRPNAGKSSLLNALAG 236 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 ++ AIVTDI GTTRDVL + ++G + I DTAG+R+ D VE+ GI R + E+E AD Sbjct: 237 REAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDATDEVERIGITRAWNEIEQADR 296 Query: 302 ILLL-----------KEINSKKEISFPKNIDFIFIGTKSDLYST---YTEEYDHLI---S 344 +LL+ +++ S+ P +I I K+DL T+E + S Sbjct: 297 VLLMLDSSDPDSRQPEKVRSEFLAKLPSHIPVTIIRNKTDLSGENEGVTQENGFTVIRLS 356 Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGL 402 + T +G++ L +K + + + +RHL L + +L L E G Sbjct: 357 AQTRQGIDLLREHLKQSMGYQ-TGTEGGFLARRRHLDALEKAAYHLRQGHIQLTEFRAG- 414 Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LR+ L +ITG + LL IFS FCIGK Sbjct: 415 ELLAEELRMVQSHLSEITGQFTSDDLLSNIFSSFCIGK 452 >gi|261250646|ref|ZP_05943221.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio orientalis CIP 102891] gi|260939215|gb|EEX95202.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio orientalis CIP 102891] Length = 453 Score = 254 bits (650), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 164/453 (36%), Positives = 247/453 (54%), Gaps = 21/453 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + IIR+SGP +V + K+ PR A F DG LD+G+ Sbjct: 4 DTIVAQATAPGRGGVGIIRVSGPLAAKVALEVTGKEL-RPRYAEYLPFTAEDGAQLDQGI 62 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + FP+P SFTGED E HGG V++ +++ + K+ +R A PGEFS RAF N K+DL Sbjct: 63 ALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILKISGIRTARPGEFSERAFLNDKLDL 122 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E + +++ + G S ++ L H+R ++EA +DF EEE + Sbjct: 123 AQAEAIADLIDASSEEAAKSALQSLQGAFSGRINTLVESLIHLRIYVEAAIDFPEEE-ID 181 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 + +V D+ + +++++ + G I+R G K+VI G NAGKSSL NAL+ K+ A Sbjct: 182 FLADGKVAADLQTIIDNLAAVRQEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKESA 241 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTDI GTTRDVL + ++G + I DTAG+R+ D VEK GI+R + E+ AD +L + Sbjct: 242 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVEKIGIERAWDEITQADRVLFM 301 Query: 306 -----KEINSKKEI------SFPKNIDFIFIGTKS-----DLYSTYTEEYDHL-ISSFTG 348 + KEI P NI I K+ DL + + + +S+ TG Sbjct: 302 VDGTTTDATDPKEIWPDFVDRLPNNIGMTVIRNKADQTGEDLGICHVNDPTLIRLSAKTG 361 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407 EG+E L +K + + +RHL L +L++ E +I+AE Sbjct: 362 EGVEALRTHLKECMGFAGGH-EGGFMARRRHLEALESASDHLDIGQQQLEGYMAGEILAE 420 Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LR+A L +ITG + LL IF+ FCIGK Sbjct: 421 ELRIAQQHLSEITGEFSSDDLLGRIFTSFCIGK 453 >gi|325275324|ref|ZP_08141277.1| tRNA modification GTPase TrmE [Pseudomonas sp. TJI-51] gi|324099572|gb|EGB97465.1| tRNA modification GTPase TrmE [Pseudomonas sp. TJI-51] Length = 456 Score = 254 bits (650), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 168/463 (36%), Positives = 258/463 (55%), Gaps = 30/463 (6%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 MN +ETI A++T + I+RLSGP + + I + PR A F DG + Sbjct: 1 MNIVRETIAAIATAQGRGGVGIVRLSGPLAAKAGQLITGRTLT-PRHAHYGPFRDEDGLV 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG V++ +L+ ++ RLA PGEFS RAF N Sbjct: 60 LDEGIALFFPGPNSFTGEDVLELQGHGGPVVLDMLLQRCVQV-GCRLARPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + + R ++ + GE S + L +R ++EA +DF E Sbjct: 119 DKLDLAQAEAIADLIEASSSQAARNALRSLQGEFSKRVHGLTEALIALRIYVEAAIDFPE 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + + VL+ + ++ ++S+ + G ++R+G +VI G NAGKSSL N LA Sbjct: 179 EE-IDFLADGHVLSMLDTVRRELSTVQREAGQGALLRDGMTVVIAGRPNAGKSSLLNQLA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRD+L + ++G + + DTAG+R TDD VEK G++R + AD Sbjct: 238 GREAAIVTDIAGTTRDILREHIHIDGMPLHVVDTAGLRATDDHVEKIGVERALKAIGEAD 297 Query: 301 LILLLKEINSKKEIS-----FPKNID-------FIFIGTKSDLYSTYT--EEYD--HLIS 344 +LL+ + ++ E S +P+ +D I K+DL E+ D H+ Sbjct: 298 RVLLVVD-STAPEASDPFALWPEFLDQRPDPAKVTLIRNKADLSGERVGLEQSDDGHVTI 356 Query: 345 SFTGE----GLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNE 397 + + + GL+ L + +K+ + + + FS + +RHL L Q +LE A L Sbjct: 357 TLSAKGNDAGLQLLRDHLKACMGYEQTAESGFS--ARRRHLEALRQASEHLEHGRAQLTL 414 Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G +++AE+LR A +LG+ITG + + LL IFS FCIGK Sbjct: 415 AGAG-ELLAEDLRQAQHALGEITGALSSDDLLGRIFSSFCIGK 456 >gi|85709802|ref|ZP_01040867.1| tRNA modification GTPase [Erythrobacter sp. NAP1] gi|85688512|gb|EAQ28516.1| tRNA modification GTPase [Erythrobacter sp. NAP1] Length = 428 Score = 254 bits (650), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 163/443 (36%), Positives = 248/443 (55%), Gaps = 18/443 (4%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+ E TIFAVS+G+ P+AI +IR+SGPS + + PR+ASL +G Sbjct: 1 MSSESSTIFAVSSGSPPAAIGVIRISGPSAGLALRQLAGRSFT-PRRASLAVLRDANGDT 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+ L++ F P + TGED AE H HGG AV+ + + L ++ LR A GEF+RRAF N Sbjct: 60 LDQALVLWFEGPATATGEDLAELHCHGGRAVLRAVTKALGEIDGLRPAEEGEFTRRAFAN 119 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G+IDL EAE LADL+ +ETE+QR ++ +S LSS +W +++ + + +EA LDFS+ Sbjct: 120 GRIDLAEAEGLADLLEAETELQRAAAVANVSSALSSKINEWREQVLRLSAQVEAALDFSD 179 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E+DV + N I L + + + K E ++ G+++V+ G NAGKS+LFNAL Sbjct: 180 EDDVSDLPEGFTWN-IEELSLGLGEWLERPK-SEKLKEGFRVVLAGPPNAGKSTLFNALI 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENA 299 + + AI + I GTTRDV+ + + G DTAG+R ++D+ +E GI+R E+ A Sbjct: 238 ESEAAITSPIAGTTRDVIERSVAIGGVPFTFVDTAGLRDDSDEEIEVIGIERARDELARA 297 Query: 300 DLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEE-YDHLISSFTGEGLEEL-INK 357 DLIL L E ++ IG ++D + H S+ +G+G+EEL ++ Sbjct: 298 DLILWLGVEGQGPEGAWE-------IGARTDAQDHVAKRSARHNCSAISGQGIEELKLDL 350 Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLG 417 +++ S+ + P + R L + LE A L +I E LR A V+ Sbjct: 351 VQAARSSLPR--PGEAALNARQHARLREAFDALESARTQSD---LLLIGEELRRARVAFD 405 Query: 418 KITGCVDVEQLLDIIFSKFCIGK 440 ++ G E +LD +F +FCIGK Sbjct: 406 RLVGRATTEDMLDALFGRFCIGK 428 >gi|317050193|ref|YP_004117841.1| tRNA modification GTPase TrmE [Pantoea sp. At-9b] gi|316951810|gb|ADU71285.1| tRNA modification GTPase TrmE [Pantoea sp. At-9b] Length = 454 Score = 254 bits (650), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 159/462 (34%), Positives = 251/462 (54%), Gaps = 30/462 (6%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+H +TI A +T + I+R+SG + + K P PR A F DG + Sbjct: 1 MSH-SDTIVAQATPPGRGGVGILRISGAKAADIARAVLGKL-PKPRYADYLPFADSDGSV 58 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG +++ +L+ + +P +R+A PGEFS RAF N Sbjct: 59 LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRIVALPGVRIAQPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + +E R ++ + G S ++ LT++R ++EA +DF + Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSAVNSLQGAFSVRINALVEALTYLRIYVEAAIDFPD 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + S ++ + + D+++ ++ + G ++R G K+VI G NAGKSSL NALA Sbjct: 179 EE-IDFLSDGKIEAQLNAVIGDLNAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + ++G + I DTAG+R+ +D VE+ GI+R + E+E AD Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDANDEVERIGIERAWQEIEQAD 297 Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYS---TYTEEYDH---LI 343 +L + + + P + + K+D+ +E H + Sbjct: 298 RVLFMVDGTTTDATEAAAIWPDFVSRLPAELPITVVRNKADMTGESLGLSEVNGHSLIRL 357 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL- 402 S+ TG G++ L + +K + + + +RHL L +L+ KD L Sbjct: 358 SARTGAGVDTLRDHLKQTMGFS-GNMEGGFLARRRHLQALELAATHLQQG----KDQLLG 412 Query: 403 ----DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LRLA +L +ITG + LL IFS FCIGK Sbjct: 413 AWAGELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFCIGK 454 >gi|331017732|gb|EGH97788.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 456 Score = 254 bits (650), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 165/461 (35%), Positives = 249/461 (54%), Gaps = 26/461 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 MN +ETI A++T + I+R+SGP + + I + P PR A F G++ Sbjct: 1 MNVPRETIAAIATAQGRGGVGIVRVSGPLAGKTAQAIIGRM-PKPRFAHYGPFADESGQV 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG V++ +L+ ++ + RLA PGEFS RAF N Sbjct: 60 LDEGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQLGS-RLARPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + + R ++ + G S +KL +R ++EA +DF E Sbjct: 119 DKLDLAQAEAIADLIEASSAQAARNALRSLQGVFSQRVDNLTEKLISLRIYVEAAIDFPE 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + + VL + ++ ++S+ + + G ++R+G +VI G NAGKSSL NALA Sbjct: 179 EE-IDFLADGHVLGILDDVRAELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVT+I GTTRDVL + ++G + + DTAG+R+T D VE G++R + AD Sbjct: 238 GREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTQDQVEMIGVQRALKAIGEAD 297 Query: 301 LILLLKEINSKKEI-----------SFPKNIDFIFIGTKSDL----YSTYTEEYDHLISS 345 ILL+ + + + P I K+DL + T H+ S Sbjct: 298 RILLVVDATAPEAADPFALWPEFLEQRPDPAKVTLIRNKADLSGDSIALQTSADGHVTIS 357 Query: 346 FT----GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKD 399 + GEGLE L +K+ + + + S + +RHL L LE A L Sbjct: 358 LSARSGGEGLELLREHLKACMGYE-QTSESSFSARRRHLEALRHASDSLEHGRAQLTLAG 416 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G +++AE+LR A +LG+ITG + LL IFS FCIGK Sbjct: 417 AG-ELLAEDLRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 456 >gi|323143419|ref|ZP_08078104.1| tRNA modification GTPase TrmE [Succinatimonas hippei YIT 12066] gi|322416824|gb|EFY07473.1| tRNA modification GTPase TrmE [Succinatimonas hippei YIT 12066] Length = 456 Score = 254 bits (650), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 179/470 (38%), Positives = 260/470 (55%), Gaps = 51/470 (10%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR-ILDK 63 ++TI A++T I+IIR+SG V + +C P RKA R F+ DG+ I+D+ Sbjct: 4 EDTIAAIATAPGRGGIAIIRVSGSKALDVAKNVCHII-PEARKAYFRKFY--DGQSIVDE 60 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 G+L+ FP P S+TGED+ E HGG +L + K+ +R A PGEF+RRAF NGK+ Sbjct: 61 GVLLYFPGPNSYTGEDTVELQGHGGNVAPQRVLSSVLKIAGVRQAEPGEFTRRAFLNGKM 120 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE-E 182 DL AE++ DLIS+ +E + ++ + GE ++ DKLT R +E LDF EE E Sbjct: 121 DLTAAEAVEDLISAGSESAAKAALSSLEGEFAAKLNTLTDKLTTFRMRLEGCLDFPEEHE 180 Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 D F S + +D+ L ++ K G + G +IV+ G NAGKSSL NALA + Sbjct: 181 DF--FDSGKAADDLHDLIAIADESLTTAKQGVKLNEGARIVLAGSPNAGKSSLLNALAGE 238 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET-DDIVEKEGIKRTFLEVENADL 301 + AIVT+IPGTTRD+L+I++++ G V I+DTAGIR+T D +E GIKR ++ ADL Sbjct: 239 ERAIVTNIPGTTRDILSINIEIGGIPVTITDTAGIRDTPSDEIEAIGIKRAIEMLKKADL 298 Query: 302 ILLLKEINSK-----------KEISFPKNIDFIFIGTKSDL--------------YSTYT 336 +LL+ + +S KEI F N + + I +KSDL +S Y Sbjct: 299 VLLMVDASSPAPEAEHTLKRLKEI-FGDNTNLLLIKSKSDLPENKETAKLLNNPDFSQYK 357 Query: 337 EEYDHLISSFTGE--GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV----RYL 390 + ISS T GL+ L ++K L + FS + +RH+ + +T+ R + Sbjct: 358 Q-----ISSSTKNPTGLDNLRAELKKALGEIPAEGVFS--ARRRHVNAIKETIDALHRSI 410 Query: 391 EMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 EM L + L + A + +A LG ITG V + +L IFS FCIGK Sbjct: 411 EMLDLGD----LVLCAREIAIAQDHLGTITGKVTSDDILGKIFSTFCIGK 456 >gi|238753998|ref|ZP_04615357.1| tRNA modification GTPase mnmE [Yersinia ruckeri ATCC 29473] gi|238707750|gb|EEQ00109.1| tRNA modification GTPase mnmE [Yersinia ruckeri ATCC 29473] Length = 454 Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 162/454 (35%), Positives = 249/454 (54%), Gaps = 23/454 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + I+R+SG + V + + K P PR A F DG LD+G+ Sbjct: 5 DTIVAQATPPGRGGVGILRVSGRAVAAVAQAVLGKL-PKPRYADYLPFRDTDGTTLDQGI 63 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 ++ FP P SFTGED E HGG +++ +L+ + +P LR+A PGEFS RAF N K+DL Sbjct: 64 VLYFPGPNSFTGEDVLELQGHGGPVILDLLLKRILALPGLRIARPGEFSERAFLNDKLDL 123 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E R ++ + G S Q ++ LTH+R ++EA +DF +EE + Sbjct: 124 AQAEAIADLIDASSEQAARSAVNSLQGAFSIRIHQLVEALTHLRIYVEAAIDFPDEE-ID 182 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S ++ + + +D++ ++ + G ++R G K+VI G NAGKSSL NALA ++ A Sbjct: 183 FLSDGKIEGQLNGVMSDLAKVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAA 242 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+E AD +L + Sbjct: 243 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWNEIEQADRVLFM 302 Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYS-----TYTEEYDHL-ISSFTG 348 + + P + + K+D+ T Y + +S+ TG Sbjct: 303 VDGTTTDATEPAAIWPEFMARLPATLPITVVRNKADVTDETLGLTEVNGYSLIRLSARTG 362 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIA 406 +G++ L + +K + + +RHL L ++L L G +++A Sbjct: 363 DGIDLLRDHLKQSMGFT-SNTEGGFLARRRHLQALEMAAQHLVQGKEQLVSNYAG-ELLA 420 Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E LRLA SL +ITG + LL IFS FCIGK Sbjct: 421 EELRLAQQSLSEITGEFSSDDLLGRIFSSFCIGK 454 >gi|254428001|ref|ZP_05041708.1| tRNA modification GTPase TrmE [Alcanivorax sp. DG881] gi|196194170|gb|EDX89129.1| tRNA modification GTPase TrmE [Alcanivorax sp. DG881] Length = 456 Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 162/455 (35%), Positives = 254/455 (55%), Gaps = 25/455 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A++T + ++RLSGP + + ++ PR A R F G +LD+GL Sbjct: 7 DTIVAIATAPGRGGVGVVRLSGPQALSIASLVVGEQSLSPRVAHFRRFRDQAGEVLDEGL 66 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 +I FP+P SFTGED E HGG +++ +L R A GEFS+RAF N K+DL Sbjct: 67 VITFPAPHSFTGEDVVELQGHGGPVILD-MLVAACIAAGARQARAGEFSQRAFLNDKMDL 125 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + T R ++ + G S Q ++ L +R ++EA +DF EEE + Sbjct: 126 TQAEAIADLIDAGTSASARAALHSLQGVFSDEVNQLVEALIGLRIYVEAAIDFPEEE-ID 184 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S +V +D+ ++ + + G ++R G +VI G NAGKSSL NALA D A Sbjct: 185 FLSDGKVASDLTAVRRQCLRVLDEANQGRLVREGMTLVIAGKPNAGKSSLMNALAGFDAA 244 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD-LILL 304 IVTDI GTTRDVL + L+G + + DTAG+R++ D+VE+EGI+R + E+ AD L+++ Sbjct: 245 IVTDIAGTTRDVLRESIQLDGMPLNLIDTAGLRDSADVVEQEGIRRAYAEMRKADRLLVM 304 Query: 305 LKEINSKKEIS-----FPKN--------IDFIFIGTKSDLY---STYTEEYDHLISSFTG 348 + +S+ +I+ P++ + + K+DL + E+ +IS+ +G Sbjct: 305 VDSRDSEGDINDIHSLLPQSQQQLENLELPVTVVLNKADLSGLPAGQREDGAFVISAASG 364 Query: 349 EGLEELINKIKSILSNKFK-KLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDII 405 +GLE L +K + + + FS + +RH+ L Q + L+ L+ G +++ Sbjct: 365 DGLEALRRHLKDAAGYQGEGQSRFS--ARRRHITALEQALAALDSGERQLHGHAAG-ELL 421 Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 AE+LR A +L +ITG + LL IFS FCIGK Sbjct: 422 AEDLRAAQKALEEITGTFTADDLLGRIFSSFCIGK 456 >gi|90413741|ref|ZP_01221729.1| tRNA modification GTPase [Photobacterium profundum 3TCK] gi|90325210|gb|EAS41707.1| tRNA modification GTPase [Photobacterium profundum 3TCK] Length = 455 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 167/460 (36%), Positives = 251/460 (54%), Gaps = 25/460 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 MN +TI A +T + IIR+SGP +V + ++ R A F DG Sbjct: 1 MNEHTDTIVAQATPPGRGGVGIIRVSGPKAKEVALAVAGRELK-TRYAEYLPFKNEDGTA 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + F +P SFTGED E HGG +++ ++ + K+ +R A PGEFS RAF N Sbjct: 60 LDQGIALFFKAPNSFTGEDVLELQGHGGPVLIDMMIRRILKLDGIRPARPGEFSERAFMN 119 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + +E + + + + G S+ + ++ + H+R ++EA +DF E Sbjct: 120 DKLDLTQAEAIADLIDASSEEAAKSAFKSLQGVFSTKVNELVEAVIHLRIYVEAAIDFPE 179 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + S +V ND+ + + + + + G IIR G K+VI G NAGKSSL NAL+ Sbjct: 180 EE-IDFLSDGKVSNDLHAIIDTLKAVRREANQGSIIREGMKVVIAGRPNAGKSSLLNALS 238 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 KD AIVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E++ AD Sbjct: 239 GKDSAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWEEIQQAD 298 Query: 301 LILLLKEINSKKEISFPKNI--DFI----------FIGTKSDLYSTYTEEYDHL------ 342 +L + + + + PK+I DFI I K +L + H+ Sbjct: 299 RVLFMVDGTTTNDTD-PKDIWPDFIERLPASMGLTVIRNKVEL-TGEAAGICHVNNPTLV 356 Query: 343 -ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDC 400 +S+ TGEG++ L +K + + +RHL L Q ++LE+ E Sbjct: 357 RLSALTGEGVDSLREHLKECMGFS-GTTEGGFMARRRHLEALEQAAQHLEIGKEQLEGFM 415 Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +I+AE LRLA L +ITG + LL IF+ FCIGK Sbjct: 416 AGEILAEELRLAQQYLSEITGEFTSDDLLGRIFTSFCIGK 455 >gi|330876348|gb|EGH10497.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 456 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 165/461 (35%), Positives = 249/461 (54%), Gaps = 26/461 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 MN +ETI A++T + I+R+SGP + + I + P PR A F G++ Sbjct: 1 MNVPRETIAAIATAQGRGGVGIVRVSGPLAGKTAQAITGRM-PKPRFAHYGPFADESGQV 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG V++ +L+ ++ + RLA PGEFS RAF N Sbjct: 60 LDEGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQLGS-RLARPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + + R ++ + G S +KL +R ++EA +DF E Sbjct: 119 DKLDLAQAEAIADLIEASSAQAARNALRSLQGVFSLRVDNLTEKLISLRIYVEAAIDFPE 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + + VL + ++ ++S+ + + G ++R+G +VI G NAGKSSL NALA Sbjct: 179 EE-IDFLADGHVLGMLDDVRAELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVT+I GTTRDVL + ++G + + DTAG+R+T D VE G++R + AD Sbjct: 238 GREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTQDQVEMIGVQRALKAIGEAD 297 Query: 301 LILLLKEINSKKEI-----------SFPKNIDFIFIGTKSDL----YSTYTEEYDHLISS 345 ILL+ + + + P I K+DL + T H+ S Sbjct: 298 RILLVVDATAPEAADPFALWPEFLEQRPDPAKVTLIRNKADLSGDSIALQTSADGHVTIS 357 Query: 346 FT----GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKD 399 + GEGLE L +K+ + + + S + +RHL L LE A L Sbjct: 358 LSARSGGEGLELLREHLKACMGYE-QTSESSFSARRRHLEALRHASDSLEHGRAQLTLAG 416 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G +++AE+LR A +LG+ITG + LL IFS FCIGK Sbjct: 417 AG-ELLAEDLRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 456 >gi|110835613|ref|YP_694472.1| tRNA modification GTPase [Alcanivorax borkumensis SK2] gi|123345176|sp|Q0VKU8|MNME_ALCBS RecName: Full=tRNA modification GTPase mnmE gi|110648724|emb|CAL18200.1| tRNA modification GTPase [Alcanivorax borkumensis SK2] Length = 456 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 163/462 (35%), Positives = 256/462 (55%), Gaps = 29/462 (6%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 + +TI A++T + ++RLSGP + I ++ PR A F DG + Sbjct: 2 LTSSPDTIVAIATAPGRGGVGVVRLSGPQALSIASSIVGERLLSPRLAHFCRFRNQDGDV 61 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+GL+I FP+P SFTGED E HGG +++ ++ + R A GEFS+RAF N Sbjct: 62 LDEGLVISFPAPHSFTGEDVVELQGHGGPVILDMLVATCIE-AGARQARAGEFSQRAFLN 120 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + T R ++ + G S+ Q ++ L +R ++EA +DF E Sbjct: 121 DKMDLTQAEAIADLIDAGTAASARAALHSLQGVFSAEVNQLVEALIGLRIYVEAAIDFPE 180 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + S +V +D+ ++ + + G ++R G +VI G NAGKSSL NALA Sbjct: 181 EE-IDFLSDGKVASDLRAVRKQCLRVLGEANQGRLVREGMTLVIAGKPNAGKSSLMNALA 239 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 D AIVTDI GTTRDVL + L+G + + DTAG+R++ D+VE+EGI+R + E+ AD Sbjct: 240 GFDAAIVTDIAGTTRDVLRESIQLDGMPLNLIDTAGLRDSADVVEQEGIRRAYAEMRKAD 299 Query: 301 LILLLKEINSKKEIS--------FPK------NIDF--IFIGTKSDLYSTYT---EEYDH 341 +L++ ++S+ + P+ N+D + K+DL T + Sbjct: 300 RLLVM--VDSRDPLDDIHNLHDLLPQSQQQLENLDLPVTVVLNKADLSGLSTGPRADGAF 357 Query: 342 LISSFTGEGLEELINKIKSILSNKFK-KLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEK 398 +IS+ GEGL+ L +K + + + + FS + +RH+ L + + LE L+ + Sbjct: 358 VISAANGEGLDALRGHLKQVAGYQGEGQSRFS--ARRRHITALEKALMALESGEQQLHGQ 415 Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G +++AE+LR A +L +ITG + LL IFS FCIGK Sbjct: 416 AAG-ELLAEDLRAAQKALEEITGVFTADDLLGRIFSSFCIGK 456 >gi|298484604|ref|ZP_07002709.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298160861|gb|EFI01877.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 456 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 166/461 (36%), Positives = 247/461 (53%), Gaps = 26/461 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 MN +ETI A++T + I+R+SGP + E I + P PR A F G+ Sbjct: 1 MNVPRETIAAIATAQGRGGVGIVRVSGPLASKAAEAIIGRT-PKPRFAHYGPFVDEAGQT 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG V++ +L+ ++ + RLA PGEFS RAF N Sbjct: 60 LDEGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQLGS-RLARPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + + R ++ + G S +KL +R ++EA +DF E Sbjct: 119 DKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSRRVDNLTEKLISLRIYVEAAIDFPE 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + + VLN + ++ ++S+ + + G ++R+G +VI G NAGKSSL NALA Sbjct: 179 EE-IDFLADGHVLNMLDDVRAELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVT+I GTTRDVL + ++G + + DTAG+R+T D VE G++R + AD Sbjct: 238 GREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTQDQVEMIGVQRALKAIGEAD 297 Query: 301 LILLLKEINSKKEI-----------SFPKNIDFIFIGTKSDLYST----YTEEYDHLISS 345 ILL+ + + + P I K+DL T H+ S Sbjct: 298 RILLVVDATAPEAADPFALWPEFLEQRPDPAKVTLIRNKADLSGDPIDLQTSVDGHVTIS 357 Query: 346 FT----GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKD 399 + G GLE L +K+ + + + S + +RHL L LE A L Sbjct: 358 LSARSGGAGLELLREHLKACMGYE-QTSESSFSARRRHLEALRHASDSLEHGRAQLTLAG 416 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G +++AE+LR A +LG+ITG + LL IFS FCIGK Sbjct: 417 AG-ELLAEDLRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 456 >gi|66048357|ref|YP_238198.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. syringae B728a] gi|81307750|sp|Q4ZL12|MNME_PSEU2 RecName: Full=tRNA modification GTPase mnmE gi|63259064|gb|AAY40160.1| tRNA modification GTPase TrmE:Small GTP-binding protein domain:GTP-binding [Pseudomonas syringae pv. syringae B728a] Length = 456 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 167/461 (36%), Positives = 249/461 (54%), Gaps = 26/461 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 MN +ETI A++T + IIR+SGP + E I + PR A F G++ Sbjct: 1 MNVPRETIAAIATAQGRGGVGIIRVSGPLAGKAAEAIIGRTLK-PRFAHYGPFVDGTGQV 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG V++ +L+ ++ + RLA PGEFS RAF N Sbjct: 60 LDEGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQLGS-RLARPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + + R ++ + G S +KL +R ++EA +DF E Sbjct: 119 DKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSRRVDNLTEKLISLRIYVEAAIDFPE 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + + VLN + ++ ++S+ + + G ++R+G +VI G NAGKSSL NALA Sbjct: 179 EE-IDFLADGHVLNMLDDVRAELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVT+I GTTRDVL + ++G + + DTAG+R+T D VE G++R + AD Sbjct: 238 GREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTQDQVEMIGVQRALKAIGEAD 297 Query: 301 LILLLKEINSKKEI-----------SFPKNIDFIFIGTKSDL----YSTYTEEYDHLISS 345 ILL+ + + + P I K+DL + T H+ S Sbjct: 298 RILLVVDATAPEAADPFALWPEFLEQRPDPSKVTLIRNKADLSGDPINLQTSVDGHVTIS 357 Query: 346 FT----GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKD 399 + GEGLE L +K+ + + + S + +RHL L LE A L Sbjct: 358 LSARSGGEGLELLREHLKACMGYE-QTSESSFSARRRHLEALRHASDSLEHGRAQLTLAG 416 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G +++AE+LR A +LG+ITG + LL IFS FCIGK Sbjct: 417 AG-ELLAEDLRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 456 >gi|254483166|ref|ZP_05096399.1| tRNA modification GTPase TrmE [marine gamma proteobacterium HTCC2148] gi|214036537|gb|EEB77211.1| tRNA modification GTPase TrmE [marine gamma proteobacterium HTCC2148] Length = 460 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 167/458 (36%), Positives = 249/458 (54%), Gaps = 26/458 (5%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63 + +TI A++T + I+RLSGP + E I PR A F + +LD Sbjct: 8 DGDTIAAIATAPGRGGVGIVRLSGPEALVIGESISGLTLS-PRHAHFSKFKNSNENVLDS 66 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 G+ + FP P SFTGED E H HGG V++ +++ R A PGEFS RA+ N KI Sbjct: 67 GIALYFPGPHSFTGEDVVELHGHGGPVVLDLLIKTCINY-GARQARPGEFSERAYLNDKI 125 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL +AE++ADLI+S TE + + G S + +T +R ++EA +DF EEE Sbjct: 126 DLTQAEAIADLINSTTEHAALNASRSLQGVFSQKIDALVTSVTQLRVYVEAAIDFPEEE- 184 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 + +V N + + +++ + Q K G + + G K+VI G NAGKSSL NAL+ +D Sbjct: 185 IDFIQDGQVSNQLSAIIAQLNAVMHQAKQGSLQQEGMKLVIAGKPNAGKSSLLNALSGQD 244 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303 AIVT I GTTRDVL + ++G + I DTAG+R + D VEKEGI+R + E+E+AD IL Sbjct: 245 TAIVTAIEGTTRDVLREHIQIDGMPLHIVDTAGLRNSADEVEKEGIRRAWNEIESADHIL 304 Query: 304 LLKEINSKKEIS-------------FPKNIDFIFIGTKSDLYS---TYTEEYDHL---IS 344 L+ + ++ ++ S F +NI I K DL + T+ ++ +S Sbjct: 305 LVVDGSNPEQHSNDPSVIWPDFTEHFSRNIPVSVIRNKCDLSQHEPSVTDSVNYCTIELS 364 Query: 345 SFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL- 402 + TG G+ L +K+ + + + FS + +RHL L + L ++ G Sbjct: 365 AKTGAGMTLLKEHLKTCMGYRQGNETNFS--ARRRHLLSLEGAAKSLTAGQHQLENAGAG 422 Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE+LR LG+ITG V +QLL IFS FCIGK Sbjct: 423 ELLAEDLRACQNLLGEITGAVSSDQLLGEIFSSFCIGK 460 >gi|330964186|gb|EGH64446.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. actinidiae str. M302091] Length = 456 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 165/461 (35%), Positives = 249/461 (54%), Gaps = 26/461 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 MN +ETI A++T + I+R+SGP + + I + P PR A F G++ Sbjct: 1 MNVPRETIAAITTAQGRGGVGIVRVSGPLAGKTAQAITGRM-PKPRFAHYGPFADESGQV 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG V++ +L+ ++ + RLA PGEFS RAF N Sbjct: 60 LDEGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQLGS-RLARPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + + R ++ + G S +KL +R ++EA +DF E Sbjct: 119 DKLDLAQAEAIADLIEASSAQAARNALRSLQGVFSLRVDNLTEKLISLRIYVEAAIDFPE 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + + VL + ++ ++S+ + + G ++R+G +VI G NAGKSSL NALA Sbjct: 179 EE-IDFLADGHVLGMLDDVRAELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVT+I GTTRDVL + ++G + + DTAG+R+T D VE G++R + AD Sbjct: 238 GREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTQDQVEMIGVQRALKAIGEAD 297 Query: 301 LILLLKEINSKKEI-----------SFPKNIDFIFIGTKSDL----YSTYTEEYDHLISS 345 ILL+ + + + P I K+DL + T H+ S Sbjct: 298 RILLVVDATAPEAADPFALWPEFLEQRPDPAKVTLIRNKADLSGDSIALQTSADGHVTIS 357 Query: 346 FT----GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKD 399 + GEGLE L +K+ + + + S + +RHL L LE A L Sbjct: 358 LSARSGGEGLELLREHLKACMGYE-QTSESSFSARRRHLEALRHASDSLEHGRAQLTLAG 416 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G +++AE+LR A +LG+ITG + LL IFS FCIGK Sbjct: 417 AG-ELLAEDLRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 456 >gi|51473927|ref|YP_067684.1| tRNA modification GTPase TrmE [Rickettsia typhi str. Wilmington] gi|81389958|sp|Q68VZ0|MNME_RICTY RecName: Full=tRNA modification GTPase mnmE gi|51460239|gb|AAU04202.1| thiophene and furan oxidation protein; tRNA modification GTPase [Rickettsia typhi str. Wilmington] Length = 445 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 159/454 (35%), Positives = 262/454 (57%), Gaps = 29/454 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL----DGRIL 61 ETIFA S+ + +++ R+SGP +V + + +K PR L Y+ + ++ Sbjct: 2 ETIFAQSSAFGKAGVAVFRISGPKSLEVLQLLTGRKDFKPR---LMYYQQIISPETNELI 58 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121 D +++ F P SFTGED E H HG A+ ++ L + ++RLA GEF++RAF N Sbjct: 59 DNAMVVYFKLPNSFTGEDVVEIHTHGSKAISIMLINTLLNIDDIRLAEAGEFTKRAFLNN 118 Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181 K DL AE +ADLI++ET MQ R ++ +G L LY W ++L I + +EA LDF + Sbjct: 119 KFDLTAAEGIADLINAETIMQHRQAVRQANGGLEELYNNWRNQLLKIIALLEAYLDFP-D 177 Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 ED+ + +V N + N+IS++++ + GE++ NG K+ I+G N GKSSL N L + Sbjct: 178 EDIPDSILNDVNNTHKNIVNEISNYLNDNRRGELLNNGLKLAIIGPPNTGKSSLLNFLMQ 237 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENAD 300 +++AIV++I GTTRD++ LD+ GY + + DTAGIR E+ DI+E+EGIKR + A+ Sbjct: 238 RNIAIVSNIAGTTRDIIEGHLDIGGYPIILQDTAGIRAESTDIIEREGIKRAINSAKTAN 297 Query: 301 LILLLKEINSKKEISFPKNI------DFIFIGTKSDLYSTYT-----EEYDHL-ISSFTG 348 + +++ + K ++S +I + I I K DL ++Y L +S Sbjct: 298 IKIIMFDA-EKLDLSINNDIIDLIDENTIVIINKIDLIEPSQIFPIEKKYKCLRVSVKNN 356 Query: 349 EGLEELINKIKSILSN--KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIA 406 L ++ I++I N F + P+ +++RH ++L Q + +L +L D L + Sbjct: 357 IALSSILKNIENIAENIAGFTETPYI--TNQRHRHYLKQALSHLMAFNL---DNDLVLAT 411 Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E++R+ + +G ITG ++VE++L+ IF FCIGK Sbjct: 412 EDMRMTARCIGLITGVINVEEILNEIFKNFCIGK 445 >gi|289628219|ref|ZP_06461173.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649109|ref|ZP_06480452.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. aesculi str. 2250] gi|330870070|gb|EGH04779.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 456 Score = 254 bits (648), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 166/461 (36%), Positives = 248/461 (53%), Gaps = 26/461 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 MN +ETI A++T + I+R+SGP + E I + P PR A F G+ Sbjct: 1 MNVPRETIAAIATAQGRGGVGIVRVSGPLASKAAEAIIGRT-PKPRFAHYGPFVDEAGQT 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG V++ +L+ ++ + RLA PGEFS RAF N Sbjct: 60 LDEGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQLGS-RLARPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + + R ++ + G S +KL +R ++EA +DF E Sbjct: 119 DKLDLAQAEAIADLIEASSAQAVRNALRSLQGAFSRRVDNLTEKLISLRIYVEAAIDFPE 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + + VLN + ++ ++S+ + + G ++R+G +VI G NAGKSSL NALA Sbjct: 179 EE-IDFLADGHVLNMLDDVRAELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVT+I GTTRDVL + ++G + + DTAG+R+T D VE G++R + AD Sbjct: 238 GREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTQDQVEMIGVQRALKAIGEAD 297 Query: 301 LILLLKEINSKKEI-----------SFPKNIDFIFIGTKSDLYSTYTEEY----DHLISS 345 ILL+ + + + P I K+DL + H+ S Sbjct: 298 RILLVVDATAPEAADPFALWPEFLEQRPDPAKVTLIRNKADLSGDPIDLQISVDGHVTIS 357 Query: 346 FT----GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKD 399 + GEGLE L +K+ + + + S + +RHL L LE A L Sbjct: 358 LSARSGGEGLELLREHLKACMGYE-QTSESSFSARRRHLEALRHASDSLEHGRAQLTLAG 416 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G +++AE+LR A +LG+ITG + LL IFS FCIGK Sbjct: 417 AG-ELLAEDLRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 456 >gi|170729246|ref|YP_001763272.1| tRNA modification GTPase TrmE [Shewanella woodyi ATCC 51908] gi|205415805|sp|B1KQ64|MNME_SHEWM RecName: Full=tRNA modification GTPase mnmE gi|169814593|gb|ACA89177.1| tRNA modification GTPase TrmE [Shewanella woodyi ATCC 51908] Length = 453 Score = 254 bits (648), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 160/453 (35%), Positives = 250/453 (55%), Gaps = 21/453 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + IIR+SG V + P R A F + ++D+G+ Sbjct: 4 DTIVAQATAPGRGGVGIIRISGDKASDVAMAVLGHL-PKTRYADYCDFKDAENAVIDQGI 62 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + F P SFTGED E HGG V++ +++ + ++ +R+A PGEFS +AF N K+DL Sbjct: 63 ALYFQGPNSFTGEDVLELQGHGGQIVLDMLIKRVMEVDGVRIAKPGEFSEQAFMNDKMDL 122 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E + ++ + GE S + ++++T++R ++EA +DF +EE V Sbjct: 123 TQAEAIADLIDATSEQAAKSALNSLQGEFSVQIHELVEQVTNLRLYVEAAIDFPDEE-VD 181 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S ++ + + + S + K G IIR G K+VI G NAGKSSL NALA K+ A Sbjct: 182 FLSDGKIAGSLNRIITKLDSVQASAKQGAIIREGMKVVIAGRPNAGKSSLLNALAGKESA 241 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVT+I GTTRDVL + L+G + I DTAG+R+TDD VE GI+R + E+E AD +L + Sbjct: 242 IVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTDDTVEMIGIERAWAEIETADQVLFM 301 Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYS---TYTEEYDHL---ISSFTG 348 + + + PKN+ + K+D+ T T+++ H IS+ TG Sbjct: 302 VDGTTTDAVDPREIWPDFIDRLPKNLGITVVRNKADITGEPLTVTQDHGHSVFKISAKTG 361 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407 G+E L +KS++ + L + +RHL L +L + E +++AE Sbjct: 362 LGVESLQQHLKSLMGYQ-SNLEGGFIARRRHLEALDLASSHLMIGKEQLEVYLAGELLAE 420 Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LR+ ++L +ITG + LL IFS FCIGK Sbjct: 421 ELRMTQMALSEITGKFTSDDLLGKIFSSFCIGK 453 >gi|225024775|ref|ZP_03713967.1| hypothetical protein EIKCOROL_01662 [Eikenella corrodens ATCC 23834] gi|224942482|gb|EEG23691.1| hypothetical protein EIKCOROL_01662 [Eikenella corrodens ATCC 23834] Length = 455 Score = 254 bits (648), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 167/446 (37%), Positives = 238/446 (53%), Gaps = 34/446 (7%) Query: 19 AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGE 78 + +IRLSG + + I K P PR+A F G +D GLL+ FP+P SFTGE Sbjct: 20 GVGVIRLSGKQLLPLAQQISGGKTPQPRRALHTDFVDAAGEAIDNGLLLYFPAPASFTGE 79 Query: 79 DSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLI 135 D E H HGG V+ +L+ EL P A PGEF++RAF NGK+DL +AES+ADLI Sbjct: 80 DVIELHGHGGRVVLQMLLQRCFELGAQP----AEPGEFTKRAFLNGKLDLAQAESVADLI 135 Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195 + ++ RL++ + G S + +D+L +R +EA LDF EE D+ + +V Sbjct: 136 DAASQSAARLAVRSLKGAFSQQIHELVDELITLRMLVEATLDFPEE-DIDFLAEAKVDER 194 Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255 + L+ + ++Q + G I+R G +V++G N GKSSL NALA +DVAIVTDI GTTR Sbjct: 195 LAALQERLVRVLAQAEQGAILREGMNVVLVGAPNVGKSSLLNALAGEDVAIVTDIAGTTR 254 Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL-------LKEI 308 D + + LEG V I DTAG+R+T D VE+ GI+R+ V+ AD+ L+ L E Sbjct: 255 DTVREQITLEGIPVHIIDTAGLRDTTDPVEQIGIERSRQAVQQADVALILIDPNEGLNEA 314 Query: 309 NSKKEISFPKNIDFIFIGTKSDLYSTYTEE---------YDHLI--SSFTGEGLEELINK 357 K P + I I K DL E D LI S+ G GL+ L Sbjct: 315 TCKILAQLPPGLKRIEIRNKIDLSGEAAESCEQSGQPSGADTLIKLSAKNGAGLDLLKQA 374 Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG---LDIIAENLRLASV 414 + + + + + + RHL + + + CG L++ AE+LRLA Sbjct: 375 LLQQIGWQGESESLFL-ARSRHL----RALEAAQAELELAALCGRHQLELFAEHLRLAQN 429 Query: 415 SLGKITGCVDVEQLLDIIFSKFCIGK 440 + ITG + + LL +IFS+FCIGK Sbjct: 430 ACNTITGEFNADDLLGVIFSRFCIGK 455 >gi|297581962|ref|ZP_06943882.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae RC385] gi|297533829|gb|EFH72670.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae RC385] Length = 464 Score = 254 bits (648), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 160/453 (35%), Positives = 248/453 (54%), Gaps = 21/453 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + IIR+SGP V + + + PR A F DG+ LD+G+ Sbjct: 15 DTIVAQATALGRGGVGIIRVSGPLSAHVAQTVTGRTL-RPRYAEYLPFTDEDGQQLDQGI 73 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + FP+P SFTGED E HGG V++ ++ + ++ +R A PGEFS AF N K+DL Sbjct: 74 ALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIKGVRPARPGEFSEHAFLNDKMDL 133 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E + +++ + GE S ++ L H+R ++EA +DF EEE + Sbjct: 134 TQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPEEE-ID 192 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 + +V D+ + +++++ + G I+R G K+VI G NAGKSSL NAL+ K+ A Sbjct: 193 FLADGKVSADLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKESA 252 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTDI GTTRDVL + ++G + I DTAG+R+ D VEK GI+R + E+ AD +L + Sbjct: 253 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDAVEKIGIERAWEEIRQADRVLFM 312 Query: 306 -----KEINSKKEI------SFPKNIDFIFIGTKSD-----LYSTYTEEYDHL-ISSFTG 348 E ++I P+NI I K+D L + + + +S+ TG Sbjct: 313 VDGTTTEATDPQDIWPDFVDKLPENIGITVIRNKADQTGEPLGICHVNQPTLIRLSAKTG 372 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407 +G++ L +K + + + +RHL L + +L + E +I+AE Sbjct: 373 QGVDALRQHLKECMGFSGNQ-EGGFMARRRHLDALERAAEHLAIGQQQLEGYMAGEILAE 431 Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LR+A L +ITG + LL IFS FCIGK Sbjct: 432 ELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 464 >gi|37678186|ref|NP_932795.1| tRNA modification GTPase TrmE [Vibrio vulnificus YJ016] gi|37196925|dbj|BAC92766.1| thiophene and furan oxidation protein ThdF [Vibrio vulnificus YJ016] Length = 462 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 165/454 (36%), Positives = 244/454 (53%), Gaps = 23/454 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVC-EFICKKKKPFPRKASLRYFFGLDGRILDKG 64 +TI A +T + IIR+SGP QV E K K R A F DG LD+G Sbjct: 13 DTIVAQATAPGRGGVGIIRVSGPQAAQVALEVTGKTLKA--RYAEYLPFKAQDGSELDQG 70 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 + + FP+P SFTGED E HGG V++ +++ + + +R A PGEFS RAF N K+D Sbjct: 71 IALFFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILTISGVRPARPGEFSERAFLNDKMD 130 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ADLI + +E + +++ + G+ S ++ L H+R ++EA +DF EEE + Sbjct: 131 LTQAEAIADLIDASSEEAAKSALQSLQGQFSKRIHTLVESLIHLRIYVEAAIDFPEEE-I 189 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + +V D+ + +++ + + G I+R G K+VI G NAGKSSL NAL+ KD Sbjct: 190 DFLADGKVAGDLQAIIDNLDAVRKEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKDS 249 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIVTDI GTTRDVL + ++G + I DTAG+R+ D VEK GI+R + E+ AD +L Sbjct: 250 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVEKIGIERAWDEIRQADRVLF 309 Query: 305 L-----KEINSKKEI------SFPKNIDFIFIGTKSDLYST------YTEEYDHLISSFT 347 + + KEI P+ I I K+D ++ +S+ T Sbjct: 310 MVDGTTTDATDPKEIWPDFIDRLPEQIGITVIRNKADQTQESLGICHVSQPTLIRLSAKT 369 Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIA 406 G+G+E L N +K + + +RHL L + +L + E +I+A Sbjct: 370 GQGVEALRNHLKECMGFSGNS-EGGFMARRRHLDALQRAAEHLLIGQEQLEGYMAGEILA 428 Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E LR+A L +ITG + LL IFS FCIGK Sbjct: 429 EELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 462 >gi|190171252|gb|ACE63696.1| ThdF [Leclercia adecarboxylata ATCC 23216] Length = 439 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 154/433 (35%), Positives = 242/433 (55%), Gaps = 23/433 (5%) Query: 20 ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGED 79 + I+R+SG +V E + K P PR A F DG LD+G+ + FP P SFTGED Sbjct: 11 VGILRISGQKAREVAEAVLGKL-PKPRYADYLPFKDTDGTALDQGIALWFPGPNSFTGED 69 Query: 80 SAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET 139 E HGG +++ +L+ + +P LR+A PGEFS RAF N K+DL +AE++ADLI + + Sbjct: 70 VLELQGHGGPVILDLLLKRILTLPGLRIARPGEFSERAFLNDKLDLAQAEAIADLIDASS 129 Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFL 199 E R ++ + G S+ ++ LTH+R ++EA +DF +EE + S ++ + + Sbjct: 130 EQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE-IDFLSDGKIEAQLNAV 188 Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259 +D+ + ++ + G ++R G K+VI G NAGKSSL NALA ++ AIVTDI GTTRDVL Sbjct: 189 MSDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLR 248 Query: 260 IDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS---- 315 + ++G + I DTAG+R+ D VE+ GI+R + E+E AD +L + + + + Sbjct: 249 EHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGTTTAAVDPAAI 308 Query: 316 -------FPKNIDFIFIGTKSDLYSTYTEEYD---H---LISSFTGEGLEELINKIKSIL 362 P N+ + K+D+ D H +S+ TGEG++EL + +K + Sbjct: 309 WPDFIARLPANLPITVVRNKADVTGETLGLSDVNGHSLIRLSARTGEGVDELRDHLKQSM 368 Query: 363 SNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSLGKIT 420 + + +RHL L + ++L+ A L G +++AE LRLA +L +IT Sbjct: 369 GFD-TSMEGGFLARRRHLQALEEAAQHLDQGKAQLLGAWAG-ELLAEELRLAQQALSEIT 426 Query: 421 GCVDVEQLLDIIF 433 G + LL IF Sbjct: 427 GEFTSDDLLGRIF 439 >gi|46577354|sp|Q7MQK6|MNME_VIBVY RecName: Full=tRNA modification GTPase mnmE Length = 453 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 165/454 (36%), Positives = 244/454 (53%), Gaps = 23/454 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVC-EFICKKKKPFPRKASLRYFFGLDGRILDKG 64 +TI A +T + IIR+SGP QV E K K R A F DG LD+G Sbjct: 4 DTIVAQATAPGRGGVGIIRVSGPQAAQVALEVTGKTLKA--RYAEYLPFKAQDGSELDQG 61 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 + + FP+P SFTGED E HGG V++ +++ + + +R A PGEFS RAF N K+D Sbjct: 62 IALFFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILTISGVRPARPGEFSERAFLNDKMD 121 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ADLI + +E + +++ + G+ S ++ L H+R ++EA +DF EEE + Sbjct: 122 LTQAEAIADLIDASSEEAAKSALQSLQGQFSKRIHTLVESLIHLRIYVEAAIDFPEEE-I 180 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + +V D+ + +++ + + G I+R G K+VI G NAGKSSL NAL+ KD Sbjct: 181 DFLADGKVAGDLQAIIDNLDAVRKEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKDS 240 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIVTDI GTTRDVL + ++G + I DTAG+R+ D VEK GI+R + E+ AD +L Sbjct: 241 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVEKIGIERAWDEIRQADRVLF 300 Query: 305 L-----KEINSKKEI------SFPKNIDFIFIGTKSDLYST------YTEEYDHLISSFT 347 + + KEI P+ I I K+D ++ +S+ T Sbjct: 301 MVDGTTTDATDPKEIWPDFIDRLPEQIGITVIRNKADQTQESLGICHVSQPTLIRLSAKT 360 Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIA 406 G+G+E L N +K + + +RHL L + +L + E +I+A Sbjct: 361 GQGVEALRNHLKECMGFSGNS-EGGFMARRRHLDALQRAAEHLLIGQEQLEGYMAGEILA 419 Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E LR+A L +ITG + LL IFS FCIGK Sbjct: 420 EELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 453 >gi|261213270|ref|ZP_05927552.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio sp. RC341] gi|260837544|gb|EEX64247.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio sp. RC341] Length = 453 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 160/453 (35%), Positives = 248/453 (54%), Gaps = 21/453 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + IIR+SGP V + + + PR A F +G+ LD+G+ Sbjct: 4 DTIVAQATAPGRGGVGIIRVSGPLAAHVAQTVTGRML-RPRYAEYLPFTDENGQQLDQGI 62 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + FP+P SFTGED E HGG V++ ++ + ++ +R A PGEFS RAF N K+DL Sbjct: 63 ALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQINGVRPARPGEFSERAFLNDKMDL 122 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E + +++ + GE S + L H+R ++EA +DF EEE + Sbjct: 123 TQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVGSLIHLRIYVEAAIDFPEEE-ID 181 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 + +V D+ + +++++ + G I+R G K+VI G NAGKSSL NAL+ K+ A Sbjct: 182 FLADGKVSADLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKESA 241 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTDI GTTRDVL + ++G + I DTAG+R+ D VEK GI+R + E+ AD +L + Sbjct: 242 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDAVEKIGIERAWEEIRQADRVLFM 301 Query: 306 -----KEINSKKEI------SFPKNIDFIFIGTKSD-----LYSTYTEEYDHL-ISSFTG 348 E ++I P+NI I K+D L + + + +S+ TG Sbjct: 302 VDGTTTEATDPQDIWPDFVDRLPENIGITVIRNKADQTGEPLGICHVNQPTLIRLSAKTG 361 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407 G++ L +K + + + +RHL L + +L++ E +I+AE Sbjct: 362 HGVDALRQHLKECMGFSGNQ-EGGFMARRRHLDALERAAEHLDIGQQQLEGYMAGEILAE 420 Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LR+A L +ITG + LL IFS FCIGK Sbjct: 421 ELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 453 >gi|17544724|ref|NP_518126.1| tRNA modification GTPase TrmE [Ralstonia solanacearum GMI1000] gi|17427013|emb|CAD13533.1| probable trna modification gtpase trme protein [Ralstonia solanacearum GMI1000] Length = 481 Score = 253 bits (647), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 154/459 (33%), Positives = 245/459 (53%), Gaps = 29/459 (6%) Query: 8 IFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLI 67 I A++T I ++R+SGP V + +C + P PR+A+ F DG +D+G+ + Sbjct: 26 IAAIATAPGRGGIGVVRVSGPDVRAVMQAVCGRLLP-PRQATYLPFLDADGAAIDRGIAL 84 Query: 68 VFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN---LRLANPGEFSRRAFENGKID 124 FP+P S+TGED E HGG V+ +L + + LR+A PGEF+RRAF N K+D Sbjct: 85 WFPAPHSYTGEDVLELQGHGGPVVMQLLLSRCLRAGHGIGLRVAEPGEFTRRAFLNDKLD 144 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ADLI + TE R + + G S ++++ H+R +EA LDF EEE + Sbjct: 145 LAQAEAVADLIEASTEAAARSAARSLDGVFSQTVHALVERVIHLRMLVEATLDFPEEE-I 203 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + + + ++ + ++Q + G ++R G +V+ G N GKSSL NALA ++ Sbjct: 204 DFLEAADARGQLADIRARLDGVLAQARQGALLREGLHVVLAGQPNVGKSSLLNALAGAEL 263 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIVT I GTTRD + + +EG + I DTAG+R+T+D VE+ GI+RT+ + AD++L Sbjct: 264 AIVTPIAGTTRDKVQQTIQIEGIPLNIVDTAGLRDTEDEVERIGIERTWAAIARADVVLH 323 Query: 305 L---------------KEINSKKEISFPKNIDFIFIGTKSDLYSTY------TEEYDHLI 343 L I+++ P + + + K DL + + + Sbjct: 324 LLDAADYRAHGLSAEDAAIDARIAEHVPPGVPTLRVINKIDLAGAAVPGRVDAQPPEVWL 383 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LNEKDCG 401 S+ G G+E L + I + + + +RHL L +L +A+ +++ Sbjct: 384 SARDGSGIELLRAALLEIAGWQGGGEGLYL-ARERHLSALRSAREHLTIAADHADQRAQS 442 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LD+ AE LRLA +L ITG + LL +IFS+FCIGK Sbjct: 443 LDLFAEELRLAQEALNSITGAFSSDDLLGVIFSRFCIGK 481 >gi|262392791|ref|YP_003284645.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio sp. Ex25] gi|262336385|gb|ACY50180.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio sp. Ex25] Length = 453 Score = 253 bits (647), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 166/457 (36%), Positives = 246/457 (53%), Gaps = 29/457 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVC-EFICKKKKPFPRKASLRYFFGLDGRILDKG 64 +TI A +T + IIR+SGP QV E K KP R A F DG +LD+G Sbjct: 4 DTIVAQATAPGRGGVGIIRVSGPKANQVALEVTGKTLKP--RYAEYLPFKSEDGTVLDQG 61 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 + + FP+P SFTGED E HGG V++ +++ + + +R A PGEFS RAF N K+D Sbjct: 62 IALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILGIDGIRAARPGEFSERAFLNDKLD 121 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ADLI + +E + +++ + G S ++ L H+R ++EA +DF EEE + Sbjct: 122 LAQAEAIADLIDASSEEAAKSALQSLQGAFSGRINTLVESLIHLRIYVEAAIDFPEEE-I 180 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + +V D+ + +++ + + G I+R G K+VI G NAGKSSL NAL+ K+ Sbjct: 181 DFLADGKVAGDLQAIIDNLDAVRKEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKES 240 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIVTDI GTTRDVL + ++G + I DTAG+R+ D VEK GI+R + E+ AD +L Sbjct: 241 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVEKIGIERAWDEIAQADRVLF 300 Query: 305 L-----KEINSKKEI------SFPKNIDFIFIGTKSDLYSTYTEEYD--HL-------IS 344 + + K+I P NI I K+D EE H+ +S Sbjct: 301 MVDGTTTDATDPKDIWPDFVDRLPDNIGITVIRNKADQTG---EEMGICHVNNPTLIRLS 357 Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLD 403 + TG G+E L +K + + +RHL L + ++L++ E + Sbjct: 358 AKTGAGVEALREHLKECMGFSGNS-EGGFMARRRHLDALERAAQHLQIGQEQLEGYMAGE 416 Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 I+AE LR+ L +ITG + LL IFS FCIGK Sbjct: 417 ILAEELRITQQHLNEITGEFSSDDLLGRIFSSFCIGK 453 >gi|254995465|ref|ZP_05277655.1| tRNA modification GTPase TrmE [Anaplasma marginale str. Mississippi] Length = 411 Score = 253 bits (647), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 158/414 (38%), Positives = 235/414 (56%), Gaps = 23/414 (5%) Query: 41 KKPF-PRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEEL 99 K+P R A+ + + + +D+ +++ FP P SFTGED E VHG +AV+ + EEL Sbjct: 7 KEPVRSRVATCKTLYDKKRQPIDQAVVLYFPGPGSFTGEDVVELQVHGSLAVIRLLFEEL 66 Query: 100 AKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYG 159 + R+A PGEFS RAF NGKIDL AE +ADL++SETE Q R + SG L LY Sbjct: 67 QTV--FRIAEPGEFSLRAFLNGKIDLTRAEGIADLVNSETEAQLRQAFAQSSGFLERLYE 124 Query: 160 QWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG 219 +W L I S +EA +DF ++ Q S V + + L N + H+ G GE +R+G Sbjct: 125 EWRSSLVDILSDLEAYIDFPDDVSPQILRS--VHDRVKELHNSLERHLDDGHRGERLRHG 182 Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 ++ ILG N GKS+LFN LA++D+AIV++ PGTTRDVL +D+ GY + DTAGIRE Sbjct: 183 MRVAILGKPNVGKSTLFNHLARRDMAIVSEYPGTTRDVLEAHVDIGGYPFIVVDTAGIRE 242 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNID------FIFIGTKSDLYS 333 + D VE+EGI R E AD+ ++L + + + I+ I++ +K+D S Sbjct: 243 STDFVEREGIMRAKSEAATADIRIMLFPHSEAGNLGVHEAIEGGDDGKTIYVLSKAD--S 300 Query: 334 TYTEEYD-------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT 386 E +L+S T G++ L++ +K + F K + + +RH HL Sbjct: 301 AKEGETRIIEGKQFYLVSVHTNLGVDSLLSALKERAIDGFPKSGDVLITSQRHRGHLQSA 360 Query: 387 VRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + + + + +I+AE LRLA+ +GK+TG V + +LD IF +FCIGK Sbjct: 361 AKVISDIT---DEMPAEIVAEYLRLATKEIGKVTGAVYGDDILDNIFKRFCIGK 411 >gi|332533705|ref|ZP_08409564.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Pseudoalteromonas haloplanktis ANT/505] gi|332036869|gb|EGI73330.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Pseudoalteromonas haloplanktis ANT/505] Length = 454 Score = 253 bits (647), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 163/454 (35%), Positives = 249/454 (54%), Gaps = 21/454 (4%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64 ++TI A +T + IIR+SG V E + K P R A F L G LD+G Sbjct: 4 QDTIAAQATAPGRGGVGIIRVSGSLAKSVAEKVVGKI-PKVRYADYVPFKSLAGEQLDQG 62 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 + I F P SFTGED E HGG V++ +L+E++K+ +RLA PGEFS RAF N K+D Sbjct: 63 IAIYFAGPNSFTGEDVLELQGHGGPVVLDMLLKEISKIEGVRLAKPGEFSERAFMNDKLD 122 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ADLI++ +E + +++ + GE S ++K+ H+R ++EA +DF +EE + Sbjct: 123 LTQAEAIADLINATSEQAAKSALQSLQGEFSKHIETLVEKVIHLRMYVEAAIDFPDEE-I 181 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 S +V D+ + +++ +Q K G I+R G ++VI G NAGKSSL NALA ++ Sbjct: 182 DFLSDGKVSGDLDTIITQLNTVTNQAKQGSIMREGMRVVIAGRPNAGKSSLLNALAGREA 241 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIVT+I GTTRDVL + ++G + I DTAG+RE+ D VE+ GI+R + E+ AD +L Sbjct: 242 AIVTEIAGTTRDVLREHIHIDGMPLHIIDTAGLRESPDRVEQIGIERAWDEINQADRVLF 301 Query: 305 L-----------KEINSKKEISFPKNIDFIFIGTKSDLYSTYT-----EEYDHL-ISSFT 347 + +I + P+ + I K+DL ++Y + +S+ Sbjct: 302 MLDGTDTIDTDPHKIWPEFMAKLPEGMGVTVIRNKADLSGDIVGMEQEQQYPVISLSAKN 361 Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIA 406 +G+E + +K+ + + + +RHL L +LE E +I+A Sbjct: 362 ADGIELVREHLKACIGFQ-GATEGGFMARRRHLDALESAAYHLETGKTQLEMHIAGEILA 420 Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E LRL L +ITG + LL IFS FCIGK Sbjct: 421 EELRLTQQYLNEITGEFTSDDLLGKIFSSFCIGK 454 >gi|330952339|gb|EGH52599.1| tRNA modification GTPase TrmE [Pseudomonas syringae Cit 7] Length = 456 Score = 253 bits (647), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 166/461 (36%), Positives = 248/461 (53%), Gaps = 26/461 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 MN +ETI A++T + I+R+SGP + E I + PR A F G++ Sbjct: 1 MNVPRETIAAIATAQGRGGVGIVRVSGPLAGRAAEAIIGRTLK-PRFAHYGPFVDDAGQV 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG V++ +L+ ++ + RLA PGEFS RAF N Sbjct: 60 LDEGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQLGS-RLARPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + + R ++ + G S +KL +R ++EA +DF E Sbjct: 119 DKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSRRVDNLTEKLISLRIYVEAAIDFPE 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + + VLN + ++ ++S+ + + G ++R+G +VI G NAGKSSL NALA Sbjct: 179 EE-IDFLADGHVLNMLDDVRAELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVT+I GTTRDVL + ++G + + DTAG+R+T D VE G++R + AD Sbjct: 238 GREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTQDQVEMIGVQRALKAIGEAD 297 Query: 301 LILLLKEINSKKEI-----------SFPKNIDFIFIGTKSDLYST----YTEEYDHLISS 345 ILL+ + + + P I K+DL T H+ S Sbjct: 298 RILLVVDATAPEAADPFALWPEFLEQRPDPSKVTLIRNKADLSGDPVDLQTSVDGHVTIS 357 Query: 346 FT----GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKD 399 + GEGLE L +K+ + + + S + +RHL L LE A L Sbjct: 358 LSARSGGEGLELLREHLKACMGYE-QTSESSFSARRRHLEALRHASDSLEHGRAQLTLAG 416 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G +++AE+LR A +LG+ITG + LL IFS FCIGK Sbjct: 417 AG-ELLAEDLRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 456 >gi|238650604|ref|YP_002916456.1| tRNA modification GTPase TrmE [Rickettsia peacockii str. Rustic] gi|238624702|gb|ACR47408.1| tRNA modification GTPase TrmE [Rickettsia peacockii str. Rustic] Length = 445 Score = 253 bits (647), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 159/456 (34%), Positives = 255/456 (55%), Gaps = 33/456 (7%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD----GRIL 61 ETIFA S+ + +++ R+SGP +V + + +K K+ L Y+ + ++ Sbjct: 2 ETIFAQSSAFGKAGVAVFRISGPKSLEVLQLLTGRKD---FKSRLMYYQQITVPETKELI 58 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121 D +++ F SP SFTGED E H HG A+ + L + +RLA GEF++RAF N Sbjct: 59 DNVMVVYFKSPGSFTGEDVVEIHTHGSKAISIMLTNALLNIAGIRLAEAGEFTKRAFLNN 118 Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181 K DL AE +ADLI++ET MQ + ++ SG+L +LY W +L I S +EA +DF + Sbjct: 119 KFDLTAAEGIADLINAETIMQHKQAIRQASGKLEALYNNWRSQLLKIISLLEAYIDFP-D 177 Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 ED+ + EV N L N IS +++ + GE++R+G K+ I+G N GKSSL N L + Sbjct: 178 EDIPDTVLNEVTNTHTILVNTISEYLNDNRKGELLRSGLKLAIIGPPNVGKSSLLNFLMQ 237 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENAD 300 +D+AIV++I GTTRD++ LD+ GY + + DTAGIR E+ DI+E+EGIKR + AD Sbjct: 238 RDIAIVSNIAGTTRDIIEGHLDIGGYPIILQDTAGIREESSDIIEQEGIKRAINSAKTAD 297 Query: 301 LILLLKEINSKKEISFPKNIDFIFI--------------GTKSDLYSTYTEEYDHLISSF 346 + +++ + +++ N D I + S ++S + +S Sbjct: 298 IKIIMFD---AEKLDSSINEDIINLIDENTIIIINKIDLIEASKIFSIENKYKCLRVSVK 354 Query: 347 TGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI 404 L ++ I++I N F ++P+ +++RH +L Q + +L SL D L + Sbjct: 355 NNIALSSILKNIENIAENMAGFTEIPY--ITNQRHRNYLQQALSHLTAFSL---DNDLVL 409 Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E++R+ +G ITG ++VE++L IF FCIGK Sbjct: 410 ATEDIRMTVRCIGAITGVINVEEILGEIFKNFCIGK 445 >gi|207727483|ref|YP_002255877.1| trna modification gtpase trme protein [Ralstonia solanacearum MolK2] gi|206590720|emb|CAQ56332.1| trna modification gtpase trme protein [Ralstonia solanacearum MolK2] Length = 491 Score = 253 bits (647), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 154/459 (33%), Positives = 246/459 (53%), Gaps = 29/459 (6%) Query: 8 IFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLI 67 I A++T I ++R+SGP V + +C + PR+A+ F G DG +D+G+ + Sbjct: 36 IAAIATAPGRGGIGVVRVSGPDVRAVMQAVCGRLLQ-PRQAAYLPFLGADGHAIDRGIAL 94 Query: 68 VFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEFSRRAFENGKID 124 FP+P S+TGED E HGG V+ +L + + +R+A PGEF+RRAF N K+D Sbjct: 95 WFPAPHSYTGEDVLELQGHGGPVVMQLLLSRCLQAGREIGVRVAEPGEFTRRAFLNDKMD 154 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ADLI + TE R + + G S ++++ H+R +EA LDF EEE + Sbjct: 155 LAQAEAVADLIEASTEAAARSAARSLDGAFSQAVHALVERVIHLRMLVEATLDFPEEE-I 213 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + + + ++ + ++Q + G ++R G +V+ G N GKSSL NALA ++ Sbjct: 214 DFLEAADARGQLADIRARLDGVLAQARQGALLREGLHVVLAGQPNVGKSSLLNALAGAEL 273 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIVT I GTTRD + + +EG + I DTAG+R+T+D VE+ GI+RT+ + AD++L Sbjct: 274 AIVTPIAGTTRDKVQQTIQIEGIPLNIVDTAGLRDTEDEVERIGIERTWAAIARADVVLH 333 Query: 305 L---------------KEINSKKEISFPKNIDFIFIGTKSDLYSTYT------EEYDHLI 343 L I+++ P + + + K DL T + + + Sbjct: 334 LLDAADYRAHGLSAEDAAIDARIAGHVPAGVPTLRVINKIDLSGAATPARVDAQPPEVWL 393 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LNEKDCG 401 S+ G G+E L + I + + + +RHL L +L +A+ +++ Sbjct: 394 SARDGSGIELLRAVLLEIAGWQGGGEGLYL-ARERHLSALRTAKDHLAIAADHADQRAQS 452 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LD+ AE LRLA +L ITG + LL +IFS+FCIGK Sbjct: 453 LDLFAEELRLAQEALNSITGAFSSDDLLGVIFSRFCIGK 491 >gi|205371771|sp|Q8Y3H5|MNME_RALSO RecName: Full=tRNA modification GTPase mnmE Length = 474 Score = 253 bits (647), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 154/459 (33%), Positives = 245/459 (53%), Gaps = 29/459 (6%) Query: 8 IFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLI 67 I A++T I ++R+SGP V + +C + P PR+A+ F DG +D+G+ + Sbjct: 19 IAAIATAPGRGGIGVVRVSGPDVRAVMQAVCGRLLP-PRQATYLPFLDADGAAIDRGIAL 77 Query: 68 VFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN---LRLANPGEFSRRAFENGKID 124 FP+P S+TGED E HGG V+ +L + + LR+A PGEF+RRAF N K+D Sbjct: 78 WFPAPHSYTGEDVLELQGHGGPVVMQLLLSRCLRAGHGIGLRVAEPGEFTRRAFLNDKLD 137 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ADLI + TE R + + G S ++++ H+R +EA LDF EEE + Sbjct: 138 LAQAEAVADLIEASTEAAARSAARSLDGVFSQTVHALVERVIHLRMLVEATLDFPEEE-I 196 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + + + ++ + ++Q + G ++R G +V+ G N GKSSL NALA ++ Sbjct: 197 DFLEAADARGQLADIRARLDGVLAQARQGALLREGLHVVLAGQPNVGKSSLLNALAGAEL 256 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIVT I GTTRD + + +EG + I DTAG+R+T+D VE+ GI+RT+ + AD++L Sbjct: 257 AIVTPIAGTTRDKVQQTIQIEGIPLNIVDTAGLRDTEDEVERIGIERTWAAIARADVVLH 316 Query: 305 L---------------KEINSKKEISFPKNIDFIFIGTKSDLYSTY------TEEYDHLI 343 L I+++ P + + + K DL + + + Sbjct: 317 LLDAADYRAHGLSAEDAAIDARIAEHVPPGVPTLRVINKIDLAGAAVPGRVDAQPPEVWL 376 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LNEKDCG 401 S+ G G+E L + I + + + +RHL L +L +A+ +++ Sbjct: 377 SARDGSGIELLRAALLEIAGWQGGGEGLYL-ARERHLSALRSAREHLTIAADHADQRAQS 435 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LD+ AE LRLA +L ITG + LL +IFS+FCIGK Sbjct: 436 LDLFAEELRLAQEALNSITGAFSSDDLLGVIFSRFCIGK 474 >gi|269965284|ref|ZP_06179405.1| tRNA modification GTPase [Vibrio alginolyticus 40B] gi|269830085|gb|EEZ84313.1| tRNA modification GTPase [Vibrio alginolyticus 40B] Length = 453 Score = 253 bits (646), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 164/455 (36%), Positives = 246/455 (54%), Gaps = 25/455 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVC-EFICKKKKPFPRKASLRYFFGLDGRILDKG 64 +TI A +T + IIR+SGP QV E K KP R A F DG +LD+G Sbjct: 4 DTIVAQATAPGRGGVGIIRVSGPKANQVALEVTGKTLKP--RYAEYLPFKSEDGTVLDQG 61 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 + + FP+P SFTGED E HGG V++ +++ + + +R A PGEFS RAF N K+D Sbjct: 62 IALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILGIDGIRAARPGEFSERAFLNDKLD 121 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ADLI + +E + +++ + G S ++ L H+R ++EA +DF EEE + Sbjct: 122 LAQAEAIADLIDASSEEAAKSALQSLQGAFSGRINTLVESLIHLRIYVEAAIDFPEEE-I 180 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + +V D+ + +++ + + G I+R G K+VI G NAGKSSL NAL+ K+ Sbjct: 181 DFLADGKVAGDLQAIIDNLDAVRKEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKES 240 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIVTDI GTTRDVL + ++G + I DTAG+R+ D VEK GI+R + E+ AD +L Sbjct: 241 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVEKIGIERAWDEIAQADRVLF 300 Query: 305 L-----KEINSKKEI------SFPKNIDFIFIGTKSDLYSTYTEEYDHL-------ISSF 346 + + K+I P NI I K+D + H+ +S+ Sbjct: 301 MVDGTTTDATDPKDIWPDFVDRLPDNIGITVIRNKAD-QTGEDMGICHVNNPTLIRLSAK 359 Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDII 405 TG G+E L + +K + + +RHL L + ++L++ E +I+ Sbjct: 360 TGAGVEALRDHLKECMGFSGNS-EGGFMARRRHLDALERAAQHLQIGQEQLEGYMAGEIL 418 Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 AE LR+ L +ITG + LL IFS FCIGK Sbjct: 419 AEELRITQQHLNEITGEFSSDDLLGRIFSSFCIGK 453 >gi|90415379|ref|ZP_01223313.1| tRNA modification GTPase [marine gamma proteobacterium HTCC2207] gi|90332702|gb|EAS47872.1| tRNA modification GTPase [marine gamma proteobacterium HTCC2207] Length = 454 Score = 253 bits (646), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 159/460 (34%), Positives = 256/460 (55%), Gaps = 26/460 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M + ++I A++T + I+R+SGP I K PR+A+ +F G++G + Sbjct: 1 MQNSLDSIVAIATAPGRGGVGIVRVSGPDISAFTSAITGKTL-LPRQATFSHFNGVNGEV 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+G+ I FP+P SFTGE E HGG +++ +++ ++ R A PGEFS RAF N Sbjct: 60 IDEGVAIYFPAPASFTGEHVLELQGHGGPVILDALVQRCVQL-GARPARPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + + R ++ + G+ S L +++L +IR ++EA +DF E Sbjct: 119 DKLDLAQAEAIADLIDATSIQAARCAVRSLQGDFSRLVNGLVERLINIRLYVEAAIDFPE 178 Query: 181 EEDVQNFSSKEVLN-DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 EE +F + E L+ ++ L+ +++ +SQ + G ++R+G +V+ G NAGKSSL NAL Sbjct: 179 EE--IDFLADERLSLNLQKLREALTNTLSQAQQGSLLRDGMTVVLAGKPNAGKSSLLNAL 236 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 A +D AIVT GTTRDVL + L+G + I DTA +R++DD +E EGI+R +LE+E A Sbjct: 237 AGRDAAIVTPKAGTTRDVLRETITLDGMPLHIVDTARLRDSDDEIELEGIRRAWLEIEQA 296 Query: 300 DLILLLKEINSKKEISFPKNIDFIFI---GTKSDLYSTYT--EEYDH------------L 342 D +L L + N F G K + +E H Sbjct: 297 DQLLFLVDANESDNPDLAAIWPEYFARYGGAKQPITVVLNKIDESGHQPGRQVGDANNFA 356 Query: 343 ISSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401 IS+ G+++L+ ++S + ++ + FS + +RHL L + + + + G Sbjct: 357 ISAKHKTGIDQLVAFLQSSMGFDERSEGVFS--ARRRHLAALEKALELVVVGQRQLSGSG 414 Query: 402 L-DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE+LRLA L +ITG + LL IFS FCIGK Sbjct: 415 AGELLAEDLRLAQAHLSEITGVFSSDDLLGHIFSSFCIGK 454 >gi|315128182|ref|YP_004070185.1| tRNA modification GTPase TrmE [Pseudoalteromonas sp. SM9913] gi|315016696|gb|ADT70034.1| tRNA modification GTPase TrmE [Pseudoalteromonas sp. SM9913] Length = 454 Score = 253 bits (646), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 166/460 (36%), Positives = 249/460 (54%), Gaps = 33/460 (7%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64 ++TI A +T + IIR+SG QV E I K P R A F L G LD+G Sbjct: 4 QDTIAAQATAPGRGGVGIIRVSGSLAKQVAEKIVGKI-PKVRFADYVPFNNLAGDQLDQG 62 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 + I F P SFTGED E HGG V++ +L+E++K+ +RLA PGEFS RAF N K+D Sbjct: 63 IAIYFAGPHSFTGEDVLELQGHGGPVVLDMLLKEISKIDGVRLAKPGEFSERAFMNDKLD 122 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ADLI++ +E + +++ + G+ S ++K+ H+R ++EA +DF +EE + Sbjct: 123 LTQAEAIADLINATSEQAAKSALQSLQGQFSKHIETLVEKVIHLRMYVEAAIDFPDEE-I 181 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 S +V D+ + +++ +Q K G I+R G ++VI G NAGKSSL NALA ++ Sbjct: 182 DFLSDGKVGGDLNAIIEQLNAVTNQAKQGSIMREGMRVVIAGRPNAGKSSLLNALAGREA 241 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIVT+I GTTRDVL + ++G + I DTAG+RE+ D VE+ GI+R + E+ AD +L Sbjct: 242 AIVTEIAGTTRDVLREHIHIDGMPLHIIDTAGLRESPDRVEQIGIERAWDEINQADRVLF 301 Query: 305 LKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTYT-----EEYDHL-ISSFT 347 + + + P+ + I K+DL ++Y + +S+ Sbjct: 302 MLDGTDTADTDPHAIWPEFMAKLPQGMGVTVIRNKADLSGDVVGMDQEQQYPVISLSAKN 361 Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHL-------YHLSQTVRYLEMASLNEKDC 400 +G+E + +K+ + + +RHL YHL LEM E Sbjct: 362 ADGIELVREHLKACIGFD-GATEGGFMARRRHLDALEHAAYHLDTGKTQLEMHVAGE--- 417 Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 I+AE LRL L +ITG + LL IFS FCIGK Sbjct: 418 ---ILAEELRLTQQYLNEITGEFTSDDLLGKIFSSFCIGK 454 >gi|322515697|ref|ZP_08068669.1| tRNA modification GTPase TrmE [Actinobacillus ureae ATCC 25976] gi|322118229|gb|EFX90524.1| tRNA modification GTPase TrmE [Actinobacillus ureae ATCC 25976] Length = 493 Score = 253 bits (646), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 166/458 (36%), Positives = 255/458 (55%), Gaps = 29/458 (6%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64 K+TI A +T + I+R+SGP +V + + K+ PR A+ F DG +LD+G Sbjct: 43 KDTIVAQATPIGRGGVGILRISGPLAQEVAKEVLGKELK-PRLANYLPFKDQDGTVLDQG 101 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 + + F +P SFTGED E HGG +++ +L+ + + +R+A GEFS +AF N K+D Sbjct: 102 IALFFKAPNSFTGEDVLELQGHGGQMILDILLKRILAVKGVRIARAGEFSEQAFLNDKLD 161 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ADLI + +E R +++ + GE S+ Q +D + ++R+++EA +DF +EE + Sbjct: 162 LAQAEAIADLIDATSEQAARSALKSLQGEFSNKINQLVDSVIYLRTYVEAAIDFPDEE-I 220 Query: 185 QNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 + ++ LNDI+ N + QG I+R G K+VI G NAGKSSL NALA Sbjct: 221 DFLADGKIEGHLNDIIRQLNGVRKEAKQGA---ILREGMKVVIAGRPNAGKSSLLNALAG 277 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 +D AIVT+I GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+E AD Sbjct: 278 RDAAIVTNIAGTTRDVLCEHIHIDGMPLHIIDTAGLREASDEVERIGIQRAWDEIEQADH 337 Query: 302 ILLLKEINSKKEISF-----------PKNIDFIFIGTKSDLYSTYT--EEYDHL----IS 344 +LL+ + + +F P+NI I K DL S +E D +S Sbjct: 338 VLLMIDSTEQTAEAFKTEWADFLAKLPQNIPVTVIRNKVDLSSEAEGLQELDGFTLIRLS 397 Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGL 402 + T G++ L +K + + + +RHL L +LE L + G Sbjct: 398 AQTKVGVDLLREHLKKSMGYQ-SSTEGGFLARRRHLQALETAAEHLERGHIQLTQFFAG- 455 Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LR+ +L +ITG + LL IFS FCIGK Sbjct: 456 ELLAEELRMVQNALSEITGQFTSDDLLGNIFSSFCIGK 493 >gi|87122923|ref|ZP_01078788.1| tRNA modification GTPase [Marinomonas sp. MED121] gi|86161796|gb|EAQ63096.1| tRNA modification GTPase [Marinomonas sp. MED121] Length = 460 Score = 253 bits (646), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 162/456 (35%), Positives = 250/456 (54%), Gaps = 23/456 (5%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63 +K+TI A +T + IIRLSGP + E + K P R A F +G +D Sbjct: 9 DKDTIAAQATPPGRGGVGIIRLSGPLSLSIAEQVLGFK-PTARHAHYGPFKDAEGEQIDL 67 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 G+ I FP+P SFTGED E HGG +++ +L + ++ RLA PGEFS RAF N K+ Sbjct: 68 GIAIYFPNPNSFTGEDVIELQGHGGPVIIDMLLSRVLEL-GARLARPGEFSERAFLNDKM 126 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL +AE++ADLI S + + ++ + G S + ++ L H+R ++EA +DF EEE Sbjct: 127 DLTQAEAIADLIDSASTQAAKCALRSLQGAFSKRIDELVESLIHLRIYVEAAIDFPEEE- 185 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 + +V ND+ ++ ++ + + K G IIR G +VI G NAGKSSL NAL+ KD Sbjct: 186 IDFIGDGKVANDLKGIQQNLIAVQKEAKQGAIIREGMNVVIAGRPNAGKSSLLNALSGKD 245 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303 AIVT+I GTTRDVL + ++G + I DTAG+R++ D VE+ GI+R + E+ AD IL Sbjct: 246 SAIVTNIEGTTRDVLREQIHIDGMPLHIIDTAGLRDSPDEVEQIGIQRAWQEIHKADRIL 305 Query: 304 LLKEINSKKEISFPKNI------------DFIFIGTKSDLYS--TYTEEYDHL----ISS 345 L+ + S + P +I + + K DL + + +++ +S+ Sbjct: 306 LMVDSKSSSNETDPAHIWPEFVAQLANQDNLTLVRNKVDLTTEKVGVTQVNNIPVISLSA 365 Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL-DI 404 +G+E L +K ++ I + +RH+ L++ +L SL D G ++ Sbjct: 366 KNQDGVELLTQHLKDVMGYDSTTEGGFI-ARRRHIEALNKASEFLNAGSLQLHDFGAGEL 424 Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +AE+L+ A +L +ITG + LL IF FCIGK Sbjct: 425 LAEDLKEAQNALSEITGAFTSDDLLGRIFGSFCIGK 460 >gi|190171250|gb|ACE63695.1| ThdF [Escherichia vulneris] Length = 439 Score = 253 bits (646), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 155/435 (35%), Positives = 241/435 (55%), Gaps = 23/435 (5%) Query: 18 SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77 + I+R+SG +V E + K P PR A F DG LD+G+ + FP P SFTG Sbjct: 9 GGVGILRISGLKAREVAEAVLGKL-PKPRYADYLPFKDADGTPLDQGIALWFPGPNSFTG 67 Query: 78 EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137 ED E HGG +++ +L+ + +P LR+A PGEFS RAF N K+DL +AE++ADLI + Sbjct: 68 EDVLELQGHGGPVILDLLLKRILTLPGLRIAKPGEFSERAFLNDKLDLAQAEAIADLIDA 127 Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197 +E R ++ + G S+ ++ LTH+R ++EA +DF +EE + S ++ + Sbjct: 128 SSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE-IDFLSDGKIEAQLN 186 Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257 + ND+ + ++ + G ++R G K+VI G NAGKSSL NALA ++ AIVTDI GTTRDV Sbjct: 187 QVMNDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDV 246 Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS-- 315 L + ++G + I DTAG+R+ D VE+ GI+R + E+E AD +L + + + + Sbjct: 247 LREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPA 306 Query: 316 ---------FPKNIDFIFIGTKSDLYSTY---TEEYDH---LISSFTGEGLEELINKIKS 360 P + + K+D+ ++ H +S+ TGEG+E L + +K Sbjct: 307 EIWPDFIARLPAKLPITVVRNKADVTGETLGISDVNGHSLIRLSARTGEGVEALRSHLKQ 366 Query: 361 ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSLGK 418 + + + +RHL L + R+LE A L G +++AE LRLA +L + Sbjct: 367 SMGFD-TSMEGGFLARRRHLQALEEAARHLEQGKAQLIGAWAG-ELLAEELRLAQQNLSE 424 Query: 419 ITGCVDVEQLLDIIF 433 ITG + LL IF Sbjct: 425 ITGEFTSDDLLGRIF 439 >gi|330813392|ref|YP_004357631.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Candidatus Pelagibacter sp. IMCC9063] gi|327486487|gb|AEA80892.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Candidatus Pelagibacter sp. IMCC9063] Length = 446 Score = 253 bits (646), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 165/449 (36%), Positives = 259/449 (57%), Gaps = 19/449 (4%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66 TI+A+ST S I+IIRLSGP+ + + I PR A L+ F+ I+D+G++ Sbjct: 2 TIYALSTPPGVSGIAIIRLSGPNSLTITKDIIHGTIDKPRMALLKTFYDSKKEIIDEGIV 61 Query: 67 IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126 + +P +S+TG+D EFHVHG AV+N L EL+ + +LA GEF+++AF N KI+L Sbjct: 62 VWYPKGQSYTGDDLIEFHVHGSKAVINKFLNELSLRSDCQLAEAGEFTKQAFLNNKINLY 121 Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186 EAES+ADL+++ETE QR ++ + S L+ +W +++ +RS EA +DFSEE+ + Sbjct: 122 EAESIADLLNAETEGQRIQALRLKNS--SPLFMKWREQILDVRSKCEAAIDFSEEDLPAS 179 Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246 V I + +I+ + K+GEI+R G+KI I G N+GKSS N LAK+ AI Sbjct: 180 ILEGNV-QKIKEISQEITVMLDDSKVGEIMREGFKIAIFGPPNSGKSSFLNLLAKRKAAI 238 Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL- 305 V++I GTTRDV+ + L ++ + V +SDTAGIR + +EK GI ++ ++L +L+ Sbjct: 239 VSEIKGTTRDVIEVQLQIKNFPVVLSDTAGIRAAKNKIEKIGIALALKQITKSNLNILIL 298 Query: 306 ------------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY--DHLISSFTGEGL 351 K IN K I K F G + L + +++ H IS+ T G Sbjct: 299 DGTIKTISNEIKKLINEKTLIIINKQDKKNFDG-RLVLKNIKGKKFLGIHKISTLTKFGY 357 Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411 ++LI +K+IL++ ++ S RH LS+T ++L+ + ++ AE L++ Sbjct: 358 KKLIEDLKNILNSLHDHGDDTLISRSRHRTLLSKTSKHLKNYLKISQSAEIEKTAEELKI 417 Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 AS L +I G + VE++L IF FC+GK Sbjct: 418 ASNYLSEIVGFIGVEEVLGRIFKDFCVGK 446 >gi|237801669|ref|ZP_04590130.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. oryzae str. 1_6] gi|331024528|gb|EGI04584.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. oryzae str. 1_6] Length = 456 Score = 253 bits (646), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 166/461 (36%), Positives = 248/461 (53%), Gaps = 26/461 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 MN +ETI A++T + I+R+SGP + I + PR A F G++ Sbjct: 1 MNVPRETIAAIATAQGRGGVGIVRVSGPLASKTAYAIAGRTLK-PRYAHYGPFSDGTGQV 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG V++ +L+ ++ + RLA PGEFS RAF N Sbjct: 60 LDEGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQLGS-RLARPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + + R ++ + G S +KL +R ++EA +DF E Sbjct: 119 DKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSQRVDNLTEKLISLRIYVEAAIDFPE 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + + VL + ++ ++S+ + + G ++R+G +VI G NAGKSSL NALA Sbjct: 179 EE-IDFLADGHVLGMLDDVRLELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVT+I GTTRDVL + ++G + + DTAG+R+T D VE G++R + AD Sbjct: 238 GREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTQDQVEMIGVQRALKAIGEAD 297 Query: 301 LILLLKEINSKKEI-----------SFPKNIDFIFIGTKSDL----YSTYTEEYDHLISS 345 ILL+ + + + + P I K+DL T E H+ S Sbjct: 298 RILLVVDATAPEAMDPFALWPEFLEQRPDPSKVTLIRNKADLSGDSVGLQTSEDGHVTIS 357 Query: 346 FT----GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKD 399 + GEGLE L +KS + + + S + +RHL L LE A L Sbjct: 358 LSARSGGEGLELLREHLKSCMGYE-QTSESSFSARRRHLEALRHASDSLEHGRAQLTLAG 416 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G +++AE+LR A +LG+ITG + LL IFS FCIGK Sbjct: 417 AG-ELLAEDLRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 456 >gi|190171192|gb|ACE63666.1| ThdF [Enterobacter cloacae] Length = 439 Score = 253 bits (646), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 157/438 (35%), Positives = 244/438 (55%), Gaps = 29/438 (6%) Query: 18 SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77 + I+R+SG +V E + K P PR A F DG LD+G+ + FP P SFTG Sbjct: 9 GGVGILRISGLKAREVAEAVLGKL-PKPRYADYLPFKDSDGTPLDQGIALWFPGPNSFTG 67 Query: 78 EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137 ED E HGG +++ +L+ + +P LR+A PGEFS RAF N K+DL +AE++ADLI + Sbjct: 68 EDVLELQGHGGPVILDLLLKRILTLPGLRIAKPGEFSERAFLNDKLDLAQAEAIADLIDA 127 Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LN 194 +E R ++ + G S+ ++ LTH+R ++EA +DF +EE + S ++ LN Sbjct: 128 SSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE-IDFLSDGKIEAQLN 186 Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254 D++ D+ + ++ + G ++R G K+VI G NAGKSSL NALA ++ AIVTDI GTT Sbjct: 187 DVM---TDLEAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTT 243 Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314 RDVL + ++G + I DTAG+R+ D VE+ GI+R + E+E AD +L + + + + Sbjct: 244 RDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAV 303 Query: 315 S-----------FPKNIDFIFIGTKSDLYSTY---TEEYDH---LISSFTGEGLEELINK 357 P + + K+D+ ++ H +S+ TGEG+++L N Sbjct: 304 DPAEIWPDFIARLPAKLPITVVRNKADVTGETLGISDVNGHSLIRLSARTGEGVDDLRNH 363 Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVS 415 +K + + + +RHL L + R+LE A L G +++AE LRLA + Sbjct: 364 LKQSMGFD-TSMEGGFLARRRHLQALEEAARHLEQGKAQLIGAWAG-ELLAEELRLAQQN 421 Query: 416 LGKITGCVDVEQLLDIIF 433 L +ITG + LL IF Sbjct: 422 LSEITGEFTSDDLLGRIF 439 >gi|163751386|ref|ZP_02158611.1| tRNA modification GTPase [Shewanella benthica KT99] gi|161328689|gb|EDP99837.1| tRNA modification GTPase [Shewanella benthica KT99] Length = 453 Score = 253 bits (645), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 160/453 (35%), Positives = 249/453 (54%), Gaps = 21/453 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + IIR+SG +V + P R A F DG ++D+G+ Sbjct: 4 DTIVAQATAPGRGGVGIIRISGDQASEVAMAMLGHI-PKTRYADYCDFKTADGEVIDQGI 62 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + F P+SFTGED E HGG V++ +++ + + +R+A PGEFS +AF N K+DL Sbjct: 63 ALYFKGPKSFTGEDVLELQGHGGQIVLDMLIKRVMETKGIRIARPGEFSEQAFMNDKLDL 122 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E + ++ + GE S+ ++++T++R ++EA +DF +EE V Sbjct: 123 TQAEAIADLIDATSEQAAKSALNSLQGEFSAEVHALVEQVTNLRLYVEAAIDFPDEE-VD 181 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S ++ + + + S + K G IIR G K+VI G NAGKSSL NALA K+ A Sbjct: 182 FLSDGKISGSLNKIITKLDSVKASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKETA 241 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVT++ GTTRDVL + L+G + I DTAG+RET D VEK GI+R + E+E AD +L + Sbjct: 242 IVTEVAGTTRDVLREHIHLDGMPLHIIDTAGLRETVDTVEKIGIERAWAEIETADQVLFM 301 Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYS---TYTEEYDH---LISSFTG 348 + + + P + + K+DL +E++ H IS+ TG Sbjct: 302 LDGTTTDAVDPHEIWPDFIDRLPNKLGITVVRNKADLTGESLALSEDHGHPVFPISAKTG 361 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAE 407 G+E L +KS++ + L + +RHL L +L + E +++AE Sbjct: 362 LGIEALKQHLKSLMGYQ-SNLEGGFIARRRHLEALDLASSHLMLGKEQLEVYLAGELLAE 420 Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LR+ ++L +ITG + LL IFS FCIGK Sbjct: 421 ELRMTQLALSEITGKFTSDDLLGKIFSSFCIGK 453 >gi|59710609|ref|YP_203385.1| tRNA modification GTPase TrmE [Vibrio fischeri ES114] gi|197334085|ref|YP_002154774.1| tRNA modification GTPase TrmE [Vibrio fischeri MJ11] gi|81311054|sp|Q5E8Z9|MNME_VIBF1 RecName: Full=tRNA modification GTPase mnmE gi|59478710|gb|AAW84497.1| tRNA modification GTPase TrmE [Vibrio fischeri ES114] gi|197315575|gb|ACH65022.1| tRNA modification GTPase TrmE [Vibrio fischeri MJ11] Length = 455 Score = 253 bits (645), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 161/458 (35%), Positives = 250/458 (54%), Gaps = 21/458 (4%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M +TI A +T + IIR+SGP V + K+ PR A F +G Sbjct: 1 MTLHTDTIVAQATAPGRGGVGIIRVSGPKAKDVALAVIGKELK-PRYAEYAPFKDENGLE 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP+P SFTGED E HGG V++ +++ + K+ +R A PGEFS RAF N Sbjct: 60 LDQGIALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILKIDGIRTARPGEFSERAFLN 119 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + +E + ++ + G S+ ++ L ++R ++EA +DF E Sbjct: 120 DKMDLAQAEAIADLIDASSEEAAKSALNSLQGVFSNKINTLVESLIYLRIYVEAAIDFPE 179 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + + +V D+ + +++++ + G I+R G K+VI G NAGKSSL NAL+ Sbjct: 180 EE-IDFLADGKVSGDLQGIIDNLNAVRKEANQGAIMREGMKVVIAGRPNAGKSSLLNALS 238 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 KD AIVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+ AD Sbjct: 239 GKDTAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWDEIAQAD 298 Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKS-----DLYSTYTEEYDHL-I 343 +L + + + PKN+ I K+ DL + + + + Sbjct: 299 RVLFMVDGTTTDATDPKLIWPEFLDRLPKNMGMTVIRNKADQTGEDLGICHVNDPTLIRL 358 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGL 402 S+ TGEG++ L N +K + + + +RHL L + ++L++ E Sbjct: 359 SAKTGEGVDALRNHLKECMGFSGNQ-EGGFMARRRHLEALEKAAQHLDIGQQQLEGYMAG 417 Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +I+AE LR+A L +ITG + LL IF+ FCIGK Sbjct: 418 EILAEELRIAQQHLSEITGEFTSDDLLGRIFTSFCIGK 455 >gi|296134494|ref|YP_003641741.1| tRNA modification GTPase TrmE [Thermincola sp. JR] gi|296033072|gb|ADG83840.1| tRNA modification GTPase TrmE [Thermincola potens JR] Length = 458 Score = 253 bits (645), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 174/458 (37%), Positives = 256/458 (55%), Gaps = 25/458 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFG--LD--GR 59 +TI A+ T + I IIR+SG ++ + F K KK S +G +D G Sbjct: 3 DTIAAIGTPIGAAGIGIIRVSGEDAIEIVDRIFRSKNKKNLHEVPSHNIVYGHIVDEKGE 62 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 ++D+ L+ V +P+SFT E+ E + HGG V LE + K RLA PGEF++RAF Sbjct: 63 VIDEVLVTVMLAPKSFTTENVVEINCHGGTVAVRKTLEAVLK-AGARLAEPGEFAKRAFL 121 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NG+IDL +AES+ DLI+++T R+++ + G+LS+ KL +R+ IEA +DF Sbjct: 122 NGRIDLAQAESIMDLINAKTAASLRVAVGQLEGKLSAQIKDIRAKLLELRAHIEAGIDFP 181 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 E D+++ S +++ + LK+ I + G+I R G K VI+G N GKSSL NAL Sbjct: 182 EH-DIEDLSKEQIKVATVELKSRIDKILESADSGKIFREGLKTVIIGKPNVGKSSLLNAL 240 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 K+ AIVTDIPGTTRDV+ + + G +KI DTAGIRET+D+VEK G++R+ +E A Sbjct: 241 VKEKRAIVTDIPGTTRDVIEEFVSIRGIPLKILDTAGIRETEDVVEKIGVQRSKEALEQA 300 Query: 300 DLILLLKEINSK-----KEI-SFPKNIDFIFIGTKSDLYSTYTEEYDH---------LIS 344 D L + ++ S+ EI +F K++ I I K+DL + +S Sbjct: 301 DFFLFVVDVASEISSEDMEIAAFLKDLSGIIIANKTDLTGGLNRDLQKELGLDVPVVAMS 360 Query: 345 SFTGEGLEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLE-MASLNEKDCGL 402 G+GL+EL KI I+ +N+F + + S+ RH L+ YL + + + Sbjct: 361 LLNGQGLDELEEKIVDIVYNNEFHSVDEILVSNVRHERALTAASEYLTGVLETLANNMPM 420 Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D + +L A LGKITG E LLD IFS+FCIGK Sbjct: 421 DCVTIDLNSAWEELGKITGETVGEDLLDQIFSQFCIGK 458 >gi|303256375|ref|ZP_07342389.1| tRNA modification GTPase TrmE [Burkholderiales bacterium 1_1_47] gi|331001498|ref|ZP_08325116.1| tRNA modification GTPase TrmE [Parasutterella excrementihominis YIT 11859] gi|302859866|gb|EFL82943.1| tRNA modification GTPase TrmE [Burkholderiales bacterium 1_1_47] gi|329568227|gb|EGG50044.1| tRNA modification GTPase TrmE [Parasutterella excrementihominis YIT 11859] Length = 463 Score = 253 bits (645), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 172/463 (37%), Positives = 263/463 (56%), Gaps = 38/463 (8%) Query: 8 IFAVSTGALPSAISIIRLSG-----PSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62 I A++TG + + I+R+SG + FQ F K+ KP R A L G+ILD Sbjct: 9 IIAIATGNGNAGVGIVRISGEEEDVKALFQKM-FPGKEIKP--RYAELLPIRDTQGQILD 65 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEEL---AKMPNLRLANPGEFSRRAFE 119 G++I F +P S+TGE E VHGG ++N I++E+ K LR A PGEF+ RAF Sbjct: 66 TGIVIYFRAPFSYTGESVLELQVHGGRVLLNWIVQEVLIFGKEFGLRQALPGEFTERAFL 125 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NGKIDL++AE++ADLI + + + + ++GE S+ D L ++R +EA LDF Sbjct: 126 NGKIDLVQAEAVADLIEANSRNAAKAASRSLTGEFSNKVNALNDALINLRVEVEAILDFP 185 Query: 180 EEED--VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 EEE + + S+E L DI +N + S + + GEI+R+G ++ ++G +N GKSSL N Sbjct: 186 EEEIDFLSEYQSQEKLEDI---QNRLESVLDSARQGEILRDGLRVALVGETNVGKSSLLN 242 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 LA +++AIV+DI GTTRD + DL + G DTAGIRET+D +E+ GI+RT E+ Sbjct: 243 YLAGEEIAIVSDIAGTTRDKIQTDLIISGVPFHFVDTAGIRETEDRIEQIGIERTKQEIS 302 Query: 298 NADLILLLKEINSKK-----------EISFPKNIDFIFIGTKSDLYSTYTEEYDHL---- 342 AD+IL +++I ++ ++ K++ I + K DL ST + Sbjct: 303 KADVILEIRDIRDQQNKNKDSMQTALKMIKGKDVPIITVLNKVDLISTPLPNTKDVSRGT 362 Query: 343 ---ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LNE 397 S+ TG+G++EL +++ + F + + +RH+++L L+ A+ LN Sbjct: 363 IIETSAVTGKGMQELKSELLKLAG--FSENQSIYMARERHIHNLLNVKESLKRAASYLNS 420 Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L++ AE LR AS LG+ITG + + LL IFS FCIGK Sbjct: 421 TSPQLELFAEELRGASDELGEITGKISSDDLLGKIFSGFCIGK 463 >gi|116053718|ref|YP_794045.1| tRNA modification GTPase TrmE [Pseudomonas aeruginosa UCBPP-PA14] gi|122256262|sp|Q02DE1|MNME_PSEAB RecName: Full=tRNA modification GTPase mnmE gi|115588939|gb|ABJ14954.1| putative GTPase for tRNA modification and thiophene and furan oxidation [Pseudomonas aeruginosa UCBPP-PA14] Length = 455 Score = 253 bits (645), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 165/461 (35%), Positives = 255/461 (55%), Gaps = 27/461 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M ETI A++T + I+R+SGP Q+ + ++ R A F G++ Sbjct: 1 MQAATETIVAIATAQGRGGVGIVRISGPLAGQIAVAVSGRQLK-ARHAHYGPFLDAGGQV 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+GL + FP P SFTGED E HGG V++ +++ ++ R A PGEFS RAF N Sbjct: 60 IDEGLSLYFPGPNSFTGEDVLELQGHGGPVVLDLLVQRCLEL-GARQARPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + +E R ++ + GE S ++L +R ++EA +DF E Sbjct: 119 DKLDLAQAEAIADLIEASSEQAARNALRSLQGEFSRRVHALTEQLISLRIYVEAAIDFPE 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + + VL + ++ ++S+ + G ++R+G +VI G NAGKSSL NALA Sbjct: 179 EE-IDFLADGHVLGLLEKVRTELSTVQREASQGALLRDGMTVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + ++G + + DTAG+R+T+D VEK G++R + AD Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTEDHVEKIGVERALKAIGEAD 297 Query: 301 LILLLKEINSKKEIS----FPKNID-------FIFIGTKSDLYS---TYTEEYD-HL--- 342 +LL+ + + + +P+ +D I K+DL + E D H+ Sbjct: 298 RVLLVVDATAPEAADPFSLWPEFLDQRPEPGKVTLIRNKADLSTESIGLEESADGHVTIT 357 Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFS-IPSHKRHLYHLSQTVRYLE--MASLNEKD 399 +S+ TG GLE L +K+ + F++ S + +RHL L Q + LE + L Sbjct: 358 LSARTGAGLELLREHLKACMG--FEQTAESGFSARRRHLEALRQAGQALEHGHSQLIHNG 415 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G +++AE+LR A LG+ITG + LL IFS FCIGK Sbjct: 416 AG-ELLAEDLRQAQQHLGEITGAFTPDDLLGRIFSSFCIGK 455 >gi|307825358|ref|ZP_07655577.1| tRNA modification GTPase TrmE [Methylobacter tundripaludum SV96] gi|307733533|gb|EFO04391.1| tRNA modification GTPase TrmE [Methylobacter tundripaludum SV96] Length = 448 Score = 253 bits (645), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 170/451 (37%), Positives = 257/451 (56%), Gaps = 25/451 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A++T + IIR+SG ++ + + K PR A F DG ++D G+ Sbjct: 7 DTIAAIATPPGNGGVGIIRVSGALVPEIAKHLVNKALT-PRLAQYSSFTDDDGSVIDSGI 65 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 ++ F +P S+TGED E HGG V++ +L + + RLANPGEF+ RAF N K+DL Sbjct: 66 ILYFLAPASYTGEDILELQGHGGSVVLDMLLRRVLSL-GARLANPGEFTERAFLNDKLDL 124 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI S TE R + + M G S + +++LT +R ++EA +DF +EE + Sbjct: 125 AQAEAVADLIESSTEQSVRSAQKSMQGVFSVQINELVEELTELRIYVEAAIDFVDEE-ID 183 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 + V N I+ + + I + G ++R+G +V+ G NAGKSSL NALA + A Sbjct: 184 FLTDGVVENRIVKILHRIGEIQKTAQQGRLLRDGMTVVLAGKPNAGKSSLLNALAGHEAA 243 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTDI GTTRDVL + L+G + I DTAG+RE+D+ +E+EGI+R E++NAD ILLL Sbjct: 244 IVTDIAGTTRDVLKERIQLDGMPLHIIDTAGLRESDNAIEQEGIRRAHEEIKNADKILLL 303 Query: 306 KEINSKKEISFPK------NIDFIF-----IGTKSDLYSTY--TEEYDHLISSFTGEGLE 352 + + S K NI I+ +G K ++ T T+ Y +S TG+G+E Sbjct: 304 IDAREAETESLLKTLPSGGNITQIYNKIDLLGLKPEIKQTELGTQIY---LSIKTGDGME 360 Query: 353 ELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENL 409 L +K S F + ++ + +RH+ L++ ++E A L G +++AE+L Sbjct: 361 LLKQHLKQ--SVGFNEATDNVFIARRRHIEALNKGHEFVESALDQLRGSQAG-ELVAEDL 417 Query: 410 RLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 R A SL +ITG + LL IFS FCIGK Sbjct: 418 RQAQNSLAEITGKFTSDDLLGKIFSSFCIGK 448 >gi|307246406|ref|ZP_07528481.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307255391|ref|ZP_07537200.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307259841|ref|ZP_07541558.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306852686|gb|EFM84916.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306861648|gb|EFM93633.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866087|gb|EFM97958.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 452 Score = 253 bits (645), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 165/458 (36%), Positives = 255/458 (55%), Gaps = 29/458 (6%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64 K+TI A +T + I+R+SGP +V + + K+ PR A+ F DG +LD+G Sbjct: 2 KDTIVAQATPIGRGGVGILRISGPLAQEVAKEVLGKELK-PRLANYLPFKEQDGTVLDQG 60 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 + + F +P SFTGED E HGG +++ +L+ + + +R+A GEFS +AF N K+D Sbjct: 61 IALFFKAPNSFTGEDVLELQGHGGQVILDILLKRILTIKGIRIARAGEFSEQAFLNDKLD 120 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ADLI + +E R +++ + GE S+ Q +D + ++R+++EA +DF +EE + Sbjct: 121 LAQAEAIADLIDATSEQAARSALKSLQGEFSNKINQLVDSVIYLRTYVEAAIDFPDEE-I 179 Query: 185 QNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 + ++ LNDI+ N + QG I+R G K+VI G NAGKSSL NALA Sbjct: 180 DFLADGKIEGHLNDIIRQLNGVRKEAKQGA---ILREGMKVVIAGRPNAGKSSLLNALAG 236 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 ++ AIVT+I GTTRDVL + ++G + I DTAG+RE +D VEK GI+R + E+E AD Sbjct: 237 REAAIVTNIAGTTRDVLREHIHIDGMPLHIIDTAGLREANDEVEKIGIQRAWDEIEQADH 296 Query: 302 ILLLKEINSKKEISF-----------PKNIDFIFIGTKSDLYSTYT--EEYDHL----IS 344 +LL+ + + +F P+NI I K DL +E D +S Sbjct: 297 VLLMIDSTEQTAEAFKTEWADFLAKLPQNIPVTVIRNKVDLSGEAEGLQELDGFTLIRLS 356 Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGL 402 + T G++ L +K + + + +RHL L +LE L + G Sbjct: 357 AQTKVGVDLLREHLKKSMGYQ-SSTEGGFLARRRHLQALETAAEHLERGHIQLTQFFAG- 414 Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LR+ +L +ITG + LL IFS FCIGK Sbjct: 415 ELLAEELRMVQNALSEITGQFTSDDLLGNIFSSFCIGK 452 >gi|326423790|ref|NP_759969.2| tRNA modification GTPase TrmE [Vibrio vulnificus CMCP6] gi|319999155|gb|AAO09496.2| tRNA modification GTPase TrmE [Vibrio vulnificus CMCP6] Length = 462 Score = 252 bits (644), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 164/454 (36%), Positives = 244/454 (53%), Gaps = 23/454 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVC-EFICKKKKPFPRKASLRYFFGLDGRILDKG 64 +TI A +T + IIR+SGP QV E K K R A F DG LD+G Sbjct: 13 DTIVAQATAPGRGGVGIIRVSGPQAAQVALEVTGKTLKA--RYAEYLPFKAQDGSELDQG 70 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 + + FP+P SFTGED E HGG V++ +++ + + +R A PGEFS RAF N K+D Sbjct: 71 IALFFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILTISGVRPARPGEFSERAFLNDKMD 130 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ADLI + +E + +++ + G+ S ++ L H+R ++EA +DF EEE + Sbjct: 131 LTQAEAIADLIDASSEEAAKSALQSLQGQFSKRIHTLVESLIHLRIYVEAAIDFPEEE-I 189 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + +V D+ + +++ + + G I+R G K+VI G NAGKSSL NAL+ KD Sbjct: 190 DFLADGKVAGDLQAIIDNLDAVRKEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKDS 249 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIVTDI GTTRDVL + ++G + I DTAG+R+ D VEK GI+R + E+ AD +L Sbjct: 250 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVEKIGIERAWDEIRQADRVLF 309 Query: 305 L-----KEINSKKEI------SFPKNIDFIFIGTKSDLYST------YTEEYDHLISSFT 347 + + KEI P+ I I K+D ++ +S+ T Sbjct: 310 MVDGTTTDATDPKEIWPDFIDRLPEQIGITVIRNKADQTQESLGICHVSQPTLIRLSAKT 369 Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIA 406 G+G++ L N +K + + +RHL L + +L + E +I+A Sbjct: 370 GQGVDALRNHLKECMGFSGNS-EGGFMARRRHLDALQRAAEHLLIGQEQLEGYMAGEILA 428 Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E LR+A L +ITG + LL IFS FCIGK Sbjct: 429 EELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 462 >gi|86147167|ref|ZP_01065483.1| tRNA modification GTPase [Vibrio sp. MED222] gi|85835051|gb|EAQ53193.1| tRNA modification GTPase [Vibrio sp. MED222] Length = 453 Score = 252 bits (644), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 167/457 (36%), Positives = 248/457 (54%), Gaps = 29/457 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVC-EFICKKKKPFPRKASLRYFFGLDGRILDKG 64 +TI A +T + IIR+SGP QV E K KP R A F +G LD+G Sbjct: 4 DTIVAQATAPGRGGVGIIRVSGPQAAQVALEVTGKVLKP--RYAEYLPFKSHNGTELDQG 61 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 + + FP+P SFTGED E HGG V++ +++ + + +R A PGEFS RAF N K+D Sbjct: 62 IALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILSISGVRAARPGEFSERAFLNDKMD 121 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ADLI + +E + +++ + GE S +D L ++R ++EA +DF EEE + Sbjct: 122 LTQAEAIADLIDASSEEAAKSALQSLQGEFSKRINTLVDSLIYLRIYVEAAIDFPEEE-I 180 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + +V D+ + +++ + + G I+R G K+VI G NAGKSSL NAL+ K+ Sbjct: 181 DFLADGKVSTDLQAIIDNLEAVRQEANQGSIMREGMKVVIAGRPNAGKSSLLNALSGKES 240 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIVTDI GTTRDVL + ++G + I DTAG+RE D VEK GI+R + E+ AD +L Sbjct: 241 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVEKIGIERAWEEIAQADRVLF 300 Query: 305 L-----KEINSKKEI------SFPKNIDFIFIGTKSDLYSTYTEEYD--HL-------IS 344 + + K+I P NI I K+D S EE H+ +S Sbjct: 301 MVDGTTTDATDPKDIWPDFVDRLPNNIGMTVIRNKADQTS---EELGICHVNDPTLIRLS 357 Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLD 403 + TG+G++ L + +K + + +RHL L + +L++ E + Sbjct: 358 AKTGQGVDALRSHLKDCMGFAGGH-EGGFMARRRHLDALERASEHLDIGQQQLEGYMAGE 416 Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 I+AE LR+ L +ITG + LL IFS FCIGK Sbjct: 417 ILAEELRITQQHLNEITGEFSSDDLLGRIFSSFCIGK 453 >gi|150863681|ref|XP_001382235.2| hypothetical protein PICST_56161 [Scheffersomyces stipitis CBS 6054] gi|149384937|gb|ABN64206.2| predicted protein [Scheffersomyces stipitis CBS 6054] Length = 478 Score = 252 bits (644), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 171/485 (35%), Positives = 266/485 (54%), Gaps = 56/485 (11%) Query: 5 KETIFAVSTGALPSAISIIRLSGP-SCFQVCEFICKKKKPFPRKASLRYFFGL-DGRILD 62 + TI+A+ST +AI +IR+SGP S + + K +P R AS+R + G +LD Sbjct: 1 QPTIYALSTKLGRAAIGVIRVSGPESKYVFNKLTNTKTQPKHRVASVRKLYSPKSGILLD 60 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP------NLRLANPGEFSRR 116 + L + F SP ++TGED E H+HGG A++ +L + ++ N+R A GEFS R Sbjct: 61 EALTLFFNSPNTYTGEDLLELHLHGGTAIIKSVLAAIKELHDPKKGINIRYAENGEFSSR 120 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NG+ DL E E + D+I +ETE QR S+ ++G L+ QW + + + + + Sbjct: 121 AFVNGRFDLTEIEGIRDMIDAETETQRIASLSSLTGNTKELFSQWRVGILNNIALMTTLI 180 Query: 177 DFSEEEDVQNFSS--KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234 DF E+ D++ + V +I L+ +I ++ + + E + G ++V+LG NAGKSS Sbjct: 181 DFGEDHDLEETAQLFDNVEENIKKLEQEIHKYLQKVRSSETLLRGIRMVLLGPPNAGKSS 240 Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD--DIVEKEGIKRT 292 L N LA +D AIV+DI GTTRD++ + LD+ GY V I DTAGIR+T+ D +E EG+KR Sbjct: 241 LLNLLANEDAAIVSDIAGTTRDIIDVPLDINGYKVVIGDTAGIRDTESADKIEIEGMKRA 300 Query: 293 FLEVENADLIL---------------LLKEINSKKEISFPKNI-----DFI-FIGTKSDL 331 + N DLIL L+ ++S +E++ P + D I +G K +L Sbjct: 301 IAKSYNCDLILAVLPFETDNKSDLHQLISHLSSLRELNRPVLVVLNKEDLIKNLGEKQEL 360 Query: 332 YSTYTE------EYDHLISSFTGEGLEELINKIKSILSNKFKKL-------PFSIPSHKR 378 ++E EY H++S TG G IN +KS LS+ F+ + P I S + Sbjct: 361 LKYFSEKLQISPEYFHVVSCLTGGG----INSLKSALSHTFRAITSSETTDPIIISSRAQ 416 Query: 379 HLYHLSQTVRYLEMASLNEKDCGLDII--AENLRLASVSLGKITG-CVDVEQLLDIIFSK 435 L + + S +D D++ E+L+ + +GKITG + VE++L ++FS Sbjct: 417 DLLENDVLQGFEDFCSWKARD---DVVLATESLKQSVEGIGKITGDAIGVEEILGVVFSS 473 Query: 436 FCIGK 440 FCIGK Sbjct: 474 FCIGK 478 >gi|212632921|ref|YP_002309446.1| tRNA modification GTPase TrmE [Shewanella piezotolerans WP3] gi|212554405|gb|ACJ26859.1| tRNA modification GTPase TrmE:Small GTP-binding protein domain:GTP-binding [Shewanella piezotolerans WP3] Length = 453 Score = 252 bits (644), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 163/454 (35%), Positives = 250/454 (55%), Gaps = 23/454 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + IIR+SG V + P R A F G ++D+G+ Sbjct: 4 DTIVAQATAPGRGGVGIIRVSGDLASNVAMAVLGHI-PKTRYADYCDFKDEQGGVIDQGI 62 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + F P SFTGED E HGG V++ +++ + + LR+A PGEFS +AF N K+DL Sbjct: 63 ALYFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVMETEGLRIAKPGEFSEQAFMNDKLDL 122 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E + ++ + GE S+ + ++++T++R ++EA +DF +EE V Sbjct: 123 TQAEAIADLIDATSEQAAKSALNSLQGEFSTQVHELVEQVTNLRLYVEAAIDFPDEE-VD 181 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S ++ + + + + + K G IIR G K+VI G NAGKSSL NALA K+ A Sbjct: 182 FLSDGKISGSLNRIITKLDTVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKESA 241 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVT+I GTTRDVL + L+G + I DTAG+R+T D VEK GI+R + E++ AD +L + Sbjct: 242 IVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTADTVEKIGIERAWDEIKTADQVLFM 301 Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTY---TEEYD---HLISSFTG 348 + + + PKN+ + K+DL TEE H IS+ TG Sbjct: 302 VDGTTTNAVDPHEIWPDFIDRLPKNLGVTVVRNKADLTGETLEITEEAGHPVHRISAKTG 361 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIA 406 G+ L +KS++ + L + +RHL L +L++ L G +++A Sbjct: 362 LGVPALQQHLKSLMGYQ-SNLEGGFIARRRHLEALDLASSHLDLGREQLEVYQAG-ELLA 419 Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E LR+A ++L +ITG + LL IFS FCIGK Sbjct: 420 EELRMAQLALSEITGKFTSDDLLGKIFSSFCIGK 453 >gi|330937305|gb|EGH41313.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. pisi str. 1704B] Length = 456 Score = 252 bits (644), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 166/461 (36%), Positives = 247/461 (53%), Gaps = 26/461 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 MN +ETI A++T + I+R+SGP + E I + PR A F G++ Sbjct: 1 MNVPRETIAAIATAQGRGGVGIVRVSGPLAGKAAEAIIGRTLK-PRFAHYGPFVDDAGQV 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG V++ +L+ ++ + RLA PGEFS RAF N Sbjct: 60 LDEGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQLGS-RLARPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + + R ++ + G S +KL +R ++EA +DF E Sbjct: 119 DKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSRRVDNLTEKLISLRIYVEAAIDFPE 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + + VLN + + ++S+ + + G ++R+G +VI G NAGKSSL NALA Sbjct: 179 EE-IDFLADGHVLNMLDDARAELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVT+I GTTRDVL + ++G + + DTAG+R+T D VE G++R + AD Sbjct: 238 GREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTQDQVEMIGVQRALKAIGEAD 297 Query: 301 LILLLKEINSKKEI-----------SFPKNIDFIFIGTKSDLYST----YTEEYDHLISS 345 ILL+ + + + P I K+DL T H+ S Sbjct: 298 RILLVVDATAPEAADPFALWPEFLEQRPDPSKVTLIRNKADLSGDPVDLQTSVDGHVTIS 357 Query: 346 FT----GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKD 399 + GEGLE L +K+ + + + S + +RHL L LE A L Sbjct: 358 LSARSGGEGLELLREHLKACMGYE-QTSESSFSARRRHLEALRHASDSLEHGRAQLTLAG 416 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G +++AE+LR A +LG+ITG + LL IFS FCIGK Sbjct: 417 AG-ELLAEDLRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 456 >gi|229593496|ref|YP_002875615.1| tRNA modification GTPase TrmE [Pseudomonas fluorescens SBW25] gi|229365362|emb|CAY53749.1| probable tRNA modification GTPase [Pseudomonas fluorescens SBW25] Length = 456 Score = 252 bits (644), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 163/461 (35%), Positives = 248/461 (53%), Gaps = 26/461 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+ +ETI AV+T + I+R+SGP I ++ PR A F D + Sbjct: 1 MSAPRETIAAVATAQGRGGVGIVRISGPLASVAANAISGRELK-PRYAHYGPFLDADQSV 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+GL + FP P SFTGED E HGG V++ +L+ ++ RLA PGEFS +AF N Sbjct: 60 LDEGLALYFPGPNSFTGEDVLELQGHGGPVVLDMLLQRCLQL-GCRLARPGEFSEQAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + + R ++ + G S ++L +R ++EA +DF E Sbjct: 119 DKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSLRVHNLTEQLISLRIYVEAAIDFPE 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + + VL + +++++S+ + + G ++R+G +VI G NAGKSSL NALA Sbjct: 179 EE-IDFLADGHVLAMLDKVRDELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVT+I GTTRD+L + ++G + + DTAG+R+TDD VEK G++R + AD Sbjct: 238 GREAAIVTEIAGTTRDILREHIHIDGMPLHVVDTAGLRDTDDQVEKIGVERALKAIGEAD 297 Query: 301 LILLLKEINSKKEI-----------SFPKNIDFIFIGTKSDLY----STYTEEYDHLISS 345 +LL+ + + + + P I K+DL + T H+ S Sbjct: 298 RVLLVVDATAPEAVDPFALWPEFLEQRPDPAKVTLIRNKADLTGEAIAMETSADGHVTLS 357 Query: 346 FT----GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKD 399 + GEGLE L +K+ + + + S + +RHL L LE A L Sbjct: 358 LSAKSAGEGLELLREHLKACMGYE-QTSESSFSARRRHLEALRHASAALEHGRAQLTLAG 416 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G +++AE+LR A LG+ITG + LL IFS FCIGK Sbjct: 417 AG-ELLAEDLRQAQQLLGEITGAFSSDDLLGRIFSSFCIGK 456 >gi|165976918|ref|YP_001652511.1| tRNA modification GTPase TrmE [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|303251175|ref|ZP_07337358.1| tRNA modification GTPase TrmE [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303252998|ref|ZP_07339152.1| tRNA modification GTPase TrmE [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307248533|ref|ZP_07530550.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307250764|ref|ZP_07532696.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307253139|ref|ZP_07535019.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307257560|ref|ZP_07539322.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|205829051|sp|B0BR82|MNME_ACTPJ RecName: Full=tRNA modification GTPase mnmE gi|165877019|gb|ABY70067.1| tRNA modification GTPase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|302648130|gb|EFL78332.1| tRNA modification GTPase TrmE [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302649975|gb|EFL80148.1| tRNA modification GTPase TrmE [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306854956|gb|EFM87142.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306857200|gb|EFM89324.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306859382|gb|EFM91415.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306863936|gb|EFM95857.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 452 Score = 252 bits (644), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 165/458 (36%), Positives = 254/458 (55%), Gaps = 29/458 (6%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64 K+TI A +T + I+R+SGP +V + + K+ PR A+ F DG +LD+G Sbjct: 2 KDTIVAQATPIGRGGVGILRISGPLAQEVAKEVLGKELK-PRLANYLPFKDQDGTVLDQG 60 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 + + F +P SFTGED E HGG +++ +L+ + + +R+A GEFS +AF N K+D Sbjct: 61 IALFFKAPNSFTGEDVLELQGHGGQVILDILLKRILTIKGIRIARAGEFSEQAFLNDKLD 120 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ADLI + +E R +++ + GE S+ Q +D + ++R+++EA +DF +EE + Sbjct: 121 LAQAEAIADLIDATSEQAARSALKSLQGEFSNKINQLVDSVIYLRTYVEAAIDFPDEE-I 179 Query: 185 QNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 + ++ LNDI+ N + QG I+R G K+VI G NAGKSSL NALA Sbjct: 180 DFLADGKIEGHLNDIIRQLNGVRKEAKQGA---ILREGMKVVIAGRPNAGKSSLLNALAG 236 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 ++ AIVT+I GTTRDVL + ++G + I DTAG+RE D VEK GI+R + E+E AD Sbjct: 237 REAAIVTNIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVEKIGIQRAWDEIEQADH 296 Query: 302 ILLLKEINSKKEISF-----------PKNIDFIFIGTKSDLYSTYT--EEYDHL----IS 344 +LL+ + + +F P+NI I K DL +E D +S Sbjct: 297 VLLMIDSTEQTAEAFKTEWADFLAKLPQNIPVTVIRNKVDLSGEAEGLQELDGFTLIRLS 356 Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGL 402 + T G++ L +K + + + +RHL L +LE L + G Sbjct: 357 AQTKVGVDLLREHLKKSMGYQ-SSTEGGFLARRRHLQALETAAEHLERGHIQLTQFFAG- 414 Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LR+ +L +ITG + LL IFS FCIGK Sbjct: 415 ELLAEELRMVQNALSEITGQFTSDDLLGNIFSSFCIGK 452 >gi|320157825|ref|YP_004190204.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio vulnificus MO6-24/O] gi|31340460|sp|Q8DDI1|MNME_VIBVU RecName: Full=tRNA modification GTPase mnmE gi|319933137|gb|ADV88001.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio vulnificus MO6-24/O] Length = 453 Score = 252 bits (644), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 164/454 (36%), Positives = 244/454 (53%), Gaps = 23/454 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVC-EFICKKKKPFPRKASLRYFFGLDGRILDKG 64 +TI A +T + IIR+SGP QV E K K R A F DG LD+G Sbjct: 4 DTIVAQATAPGRGGVGIIRVSGPQAAQVALEVTGKTLKA--RYAEYLPFKAQDGSELDQG 61 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 + + FP+P SFTGED E HGG V++ +++ + + +R A PGEFS RAF N K+D Sbjct: 62 IALFFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILTISGVRPARPGEFSERAFLNDKMD 121 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ADLI + +E + +++ + G+ S ++ L H+R ++EA +DF EEE + Sbjct: 122 LTQAEAIADLIDASSEEAAKSALQSLQGQFSKRIHTLVESLIHLRIYVEAAIDFPEEE-I 180 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + +V D+ + +++ + + G I+R G K+VI G NAGKSSL NAL+ KD Sbjct: 181 DFLADGKVAGDLQAIIDNLDAVRKEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKDS 240 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIVTDI GTTRDVL + ++G + I DTAG+R+ D VEK GI+R + E+ AD +L Sbjct: 241 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVEKIGIERAWDEIRQADRVLF 300 Query: 305 L-----KEINSKKEI------SFPKNIDFIFIGTKSDLYST------YTEEYDHLISSFT 347 + + KEI P+ I I K+D ++ +S+ T Sbjct: 301 MVDGTTTDATDPKEIWPDFIDRLPEQIGITVIRNKADQTQESLGICHVSQPTLIRLSAKT 360 Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIA 406 G+G++ L N +K + + +RHL L + +L + E +I+A Sbjct: 361 GQGVDALRNHLKECMGFSGNS-EGGFMARRRHLDALQRAAEHLLIGQEQLEGYMAGEILA 419 Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E LR+A L +ITG + LL IFS FCIGK Sbjct: 420 EELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 453 >gi|330890255|gb|EGH22916.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. mori str. 301020] Length = 456 Score = 252 bits (643), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 166/461 (36%), Positives = 247/461 (53%), Gaps = 26/461 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 MN +ETI A++T + I+R+SGP + E I + PR A F G++ Sbjct: 1 MNVPRETIAAIATAQGRGGVGIVRVSGPLAGRAAEAIIGRTLK-PRFAHYGPFVDDAGQV 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG V++ +L+ ++ + RLA PGEFS RAF N Sbjct: 60 LDEGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQLGS-RLARPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + + R ++ + G S +KL +R ++EA +DF E Sbjct: 119 DKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSRRVDNLTEKLISLRIYVEAAIDFPE 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + + VLN + ++ ++S+ + + G ++R+G +VI G NAGKSSL NALA Sbjct: 179 EE-IDFLADGHVLNMLDDVRAELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + ++G + + DTAG+R+T D VE G++R + AD Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTQDQVEMIGVQRALKAIGEAD 297 Query: 301 LILLLKEINSKKEI-----------SFPKNIDFIFIGTKSDLYST----YTEEYDHLISS 345 ILL+ + + + P I K+DL T H+ S Sbjct: 298 RILLVVDATAPEAADPFALWPEFLEQRPDPSKVTLIRNKADLSGDPIDLQTSVDGHVTIS 357 Query: 346 FT----GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKD 399 + GEGLE L +K+ + + + S + +RHL L LE A L Sbjct: 358 LSARSGGEGLELLREHLKACMGYE-QTSESSFSARRRHLEALRHASDSLEHGRAQLTLAG 416 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G +++AE+ R A +LG+ITG + LL IFS FCIGK Sbjct: 417 AG-ELLAEDPRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 456 >gi|190171248|gb|ACE63694.1| ThdF [Escherichia vulneris] Length = 439 Score = 252 bits (643), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 154/435 (35%), Positives = 240/435 (55%), Gaps = 23/435 (5%) Query: 18 SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77 + I+R+SG +V + + K P PR A F DG LD+G+ + FP P SFTG Sbjct: 9 GGVGILRISGHKAREVAQAVLGKL-PKPRYADYLPFNDADGTALDQGIALWFPGPNSFTG 67 Query: 78 EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137 ED E HGG +++ +L+ + +P LR+A PGEFS RAF N K+DL +AE++ADLI + Sbjct: 68 EDVLELQGHGGPVILDLLLKRILTLPGLRIARPGEFSERAFLNDKLDLAQAEAIADLIDA 127 Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197 +E R ++ + G S+ ++ LTH+R ++EA +DF +EE + S ++ + Sbjct: 128 SSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE-IDFLSDGKIEAQLN 186 Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257 + D+ + ++ + G ++R G K+VI G NAGKSSL NALA ++ AIVTDI GTTRDV Sbjct: 187 GVMADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDV 246 Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS-- 315 L + ++G + I DTAG+R+ D VE+ GI+R + E+E AD +L + + + + Sbjct: 247 LREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPA 306 Query: 316 ---------FPKNIDFIFIGTKSDLYSTY---TEEYDH---LISSFTGEGLEELINKIKS 360 P + + K+DL +E H +S++TGEG++ L N +K Sbjct: 307 DIWPDFIARLPAKLPITVVRNKADLTGETLGISEVNGHSLVRLSAYTGEGIDVLRNHLKQ 366 Query: 361 ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSLGK 418 + ++ + +RHL L +L+ A L G +++AE LRLA SL + Sbjct: 367 SMGFD-TQMEGGFLARRRHLQALELAAEHLQQGKAQLLGAWAG-ELLAEELRLAQQSLSE 424 Query: 419 ITGCVDVEQLLDIIF 433 ITG + LL IF Sbjct: 425 ITGEFTSDDLLGRIF 439 >gi|190171222|gb|ACE63681.1| ThdF [Enterobacter ludwigii] Length = 439 Score = 252 bits (643), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 153/435 (35%), Positives = 241/435 (55%), Gaps = 23/435 (5%) Query: 18 SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77 + I+R+SG +V E + K P PR A F DG LD+G+ + FP P SFTG Sbjct: 9 GGVGILRISGLKAREVAEAVLGKL-PKPRYADYLPFKDTDGTPLDQGIALWFPGPNSFTG 67 Query: 78 EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137 ED E HGG +++ +L+ + +P +R+A PGEFS RAF N K+DL +AE++ADLI + Sbjct: 68 EDVLELQGHGGPVILDLLLKRILTLPGMRIAKPGEFSERAFLNDKLDLAQAEAIADLIDA 127 Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197 +E R ++ + G S+ ++ LTH+R ++EA +DF +EE + S ++ + Sbjct: 128 SSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE-IDFLSDGKIEAQLN 186 Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257 + D+ + ++ + G ++R G K+VI G NAGKSSL NALA ++ AIVTDI GTTRDV Sbjct: 187 SVMADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDV 246 Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS-- 315 L + ++G + I DTAG+R+ D VE+ GI+R + E+E AD +L + + + + Sbjct: 247 LREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPA 306 Query: 316 ---------FPKNIDFIFIGTKSDLYSTY---TEEYDH---LISSFTGEGLEELINKIKS 360 P + + K+D+ +E H +S+ TGEG+++L N +K Sbjct: 307 DIWPDFIARLPAKLPITVVRNKADVTGETLGISEVNGHSLIRLSARTGEGVDDLRNHLKQ 366 Query: 361 ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSLGK 418 + + + +RHL L R+L+ A L G +++AE LRLA +L + Sbjct: 367 SMGFD-TSMEGGFLARRRHLQALEDAARHLDQGKAQLLGAWAG-ELLAEELRLAQQNLSE 424 Query: 419 ITGCVDVEQLLDIIF 433 ITG + + LL IF Sbjct: 425 ITGEITSDDLLGRIF 439 >gi|262273126|ref|ZP_06050943.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Grimontia hollisae CIP 101886] gi|262222882|gb|EEY74190.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Grimontia hollisae CIP 101886] Length = 454 Score = 252 bits (643), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 163/461 (35%), Positives = 251/461 (54%), Gaps = 28/461 (6%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M H +TI A +T + IIR+SGP V + + + P R+A F +G Sbjct: 1 MTH-SDTIVAQATPPGRGGVGIIRVSGPKAKAVAKAVTGRDLPV-RRAEYLPFKDAEGNA 58 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + F +P SFTGED E HGG +++ +++ + ++ +R A PGEFS RAF N Sbjct: 59 LDQGIALYFQAPNSFTGEDVLELQGHGGPVIMDMLIKRIVEIDGVRTARPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + +E + +++ + G SS ++ L H+R ++EA +DF + Sbjct: 119 DKLDLAQAEAIADLIDASSEQAAKSALQSLQGAFSSKVNALVEALIHLRIYVEAAIDFPD 178 Query: 181 EEDVQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 EE + S +V LN+I+ +++ +QG I+R G K+VI G NAGKSSL N Sbjct: 179 EE-IDFLSDGKVAGDLNNIITSLDEVRKAANQGA---IMREGMKVVIAGRPNAGKSSLLN 234 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 AL+ K+ AIVTDI GTTRDVL + ++G + I DTAG+R+ D VE+ GI+R + E+ Sbjct: 235 ALSGKESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWDEIA 294 Query: 298 NADLILLL-----KEINSKKEI------SFPKNIDFIFIGTKSDLYST------YTEEYD 340 AD +L + + S +EI P N+ I K+D+ ++ Sbjct: 295 QADRVLFMVDGTTTDATSPEEIWPEFIDRLPSNMGMTVIRNKADITGETLGICHASQPTL 354 Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKD 399 +S+ TG G++ L +K+ + + +RHL L R+LE+ E Sbjct: 355 IRLSAKTGAGVDALREHLKACMGFS-GAAEGGFMARRRHLEALDAAARHLEIGKDQLEGY 413 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +I+AE LR+A L +ITG + LL IFS FCIGK Sbjct: 414 MAGEILAEELRIAQQHLSEITGEFSSDDLLGRIFSSFCIGK 454 >gi|317401615|gb|EFV82241.1| tRNA modification GTPase mnmE [Achromobacter xylosoxidans C54] Length = 450 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 166/439 (37%), Positives = 246/439 (56%), Gaps = 23/439 (5%) Query: 19 AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGE 78 I ++R+SG ++ + +++ PR A F +DG +LD+G+ + F P S+TGE Sbjct: 18 GIGVVRVSGADLSELVRRLFQRELT-PRHAHYLPFKAVDGELLDEGIALYFKGPHSYTGE 76 Query: 79 DSAEFHVHGGIAVVNGILEEL---AKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLI 135 D E HGG AV+ +L+ + LRLA PGEF+RRAF N ++DL +AE++ADLI Sbjct: 77 DVLELQGHGGPAVLRRVLDSCLAAGRDLGLRLAEPGEFTRRAFLNDRMDLAQAEAVADLI 136 Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED--VQNFSSKEVL 193 + + R +M +SG+ S+ D++ H+R +EA LDF EEE ++ + ++ L Sbjct: 137 EASSVAAARGAMASLSGDFSARVNDLSDRIIHLRMLVEATLDFPEEEIDFLEKYQARPTL 196 Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253 L D+ I+Q + G I+R G +V+ G N GKSSL NALA DVAIVT I GT Sbjct: 197 EK---LAGDLGHLIAQARQGVILREGLHVVLAGQPNVGKSSLLNALAGDDVAIVTPIAGT 253 Query: 254 TRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK------- 306 TRD + + ++G + I DTAG+RET+D VE GI R++ E+E AD+IL L+ Sbjct: 254 TRDKVVQQIHIDGVPLHIVDTAGLRETEDTVESIGIARSWQEIERADVILHLQDATQPGD 313 Query: 307 EINSKKEISFPKNIDFIFIGTKSDLYST-YTEEYDHL-ISSFTGEGLEELINKIKSILS- 363 E++++ P + + K DL ST + L IS+ G GL+ L ++ I Sbjct: 314 ELDAQITARLPPRTPVLKVFNKVDLLSTAFAAGPGELGISAKRGAGLDALRAELLRIAGW 373 Query: 364 NKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LNEKDCGLDIIAENLRLASVSLGKITG 421 N + P+ + +RHL+ L +L +A+ + D LD+ AE LRLA SL ITG Sbjct: 374 NPGAESPWL--ARERHLHALQDAADHLALAAEHAEQDDRVLDLFAEELRLAHDSLSSITG 431 Query: 422 CVDVEQLLDIIFSKFCIGK 440 + LL IFS FCIGK Sbjct: 432 KFTSDDLLGEIFSSFCIGK 450 >gi|160901486|ref|YP_001567068.1| tRNA modification GTPase TrmE [Delftia acidovorans SPH-1] gi|160367070|gb|ABX38683.1| tRNA modification GTPase TrmE [Delftia acidovorans SPH-1] Length = 473 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 166/476 (34%), Positives = 244/476 (51%), Gaps = 40/476 (8%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 + + I A++T A+ I+R+SG + +C + PR+A+ F G Sbjct: 2 LPRHNDPIAAIATAPGRGAVGIVRVSGKGVAPLVRALCGRDLK-PREATYLPFRDAQGGP 60 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAK---------MPNLRLA 108 +D GL + FP+P S+TGED E HGG V+ +L E A+ +P LRLA Sbjct: 61 IDHGLALFFPAPHSYTGEDVLELQAHGGPVVLQLLLARCLEAAQDPREGHRSVLPGLRLA 120 Query: 109 NPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHI 168 PGEF+ RAF N KIDL +AE++ADLI + TE R + +SG S D L H+ Sbjct: 121 QPGEFTERAFLNDKIDLAQAEAIADLIDASTEAAARSASRSLSGAFSEEIHGLRDALVHL 180 Query: 169 RSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHS 228 R +EA LDF EEE + + + L+ + +S+ G ++R G K+VI G Sbjct: 181 RMLVEATLDFPEEE-IDFLQKADASGQLARLRGKLDQVLSRAHQGALLREGIKVVIAGQP 239 Query: 229 NAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEG 288 NAGKSSL NALA ++AIVT I GTTRD + + +EG + + DTAG+RE+ D VE+ G Sbjct: 240 NAGKSSLLNALAGAELAIVTPIAGTTRDKVQQTIQIEGVPLHVIDTAGLRESSDEVERIG 299 Query: 289 IKRTFLEVENADLILLLKEINSKKEISF---------------PKNIDFIFIGTKSD--- 330 I R + E+ AD +L L ++ E + P+ + I + K+D Sbjct: 300 IARAWDEIAAADAVLFLHDLTRMGEHDYLAADAAIAETLAQKLPRQVPVIDVWNKTDRAE 359 Query: 331 ---LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP-SHKRHLYHLSQT 386 + E +S+ TG+GL+ L ++ + ++ P + + RH+ L Sbjct: 360 PARMQEHGGREGSVALSARTGDGLDALRRRLLDVAG--WQSAPEGLYLARARHVEALQAV 417 Query: 387 VRYLEMASLNEKDCG--LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +L+ A L LD++AE LRLA VSL ITG + LL +IFS FCIGK Sbjct: 418 AAHLQEAELQLAAQAAHLDLLAEELRLAQVSLNSITGEFSSDDLLGVIFSSFCIGK 473 >gi|218708090|ref|YP_002415711.1| tRNA modification GTPase TrmE [Vibrio splendidus LGP32] gi|218321109|emb|CAV17059.1| tRNA modification GTPase trmE [Vibrio splendidus LGP32] Length = 467 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 168/457 (36%), Positives = 248/457 (54%), Gaps = 29/457 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVC-EFICKKKKPFPRKASLRYFFGLDGRILDKG 64 +TI A +T + IIR+SGP QV E K KP R A F DG LD+G Sbjct: 18 DTIVAQATAPGRGGVGIIRVSGPLATQVALEVTGKTLKP--RYAEYLPFKSHDGIELDQG 75 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 + + FP+P SFTGED E HGG V++ +++ + + +R A PGEFS RAF N K+D Sbjct: 76 IALFFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILAISGVRAARPGEFSERAFLNDKMD 135 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ADLI + +E + +++ + GE S +D L ++R ++EA +DF EEE + Sbjct: 136 LTQAEAIADLIDASSEEAAKSALQSLQGEFSKRINTLVDSLIYLRIYVEAAIDFPEEE-I 194 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + +V D+ + +++ + + G I+R G K+VI G NAGKSSL NAL+ K+ Sbjct: 195 DFLADGKVSADLQAIIDNLEAVRQEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKES 254 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIVTDI GTTRDVL + ++G + I DTAG+RE D VEK GI+R + E+ AD +L Sbjct: 255 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVEKIGIERAWEEIAQADRVLF 314 Query: 305 L-----KEINSKKEI------SFPKNIDFIFIGTKSDLYSTYTEEYD--HL-------IS 344 + + K+I P NI I K+D S EE H+ +S Sbjct: 315 MVDGTTTDATDPKDIWPDFVDRLPDNIGMTVIRNKADQTS---EELGICHVNDPTLIRLS 371 Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLD 403 + TG+G++ L + +K + + +RHL L + +L++ E + Sbjct: 372 AKTGQGVDALRSHLKDCMGFAGGH-EGGFMARRRHLDALERASEHLDIGQQQLEGYMAGE 430 Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 I+AE LR+ L +ITG + LL IFS FCIGK Sbjct: 431 ILAEELRITQQHLNEITGEFSSDDLLGRIFSSFCIGK 467 >gi|300313619|ref|YP_003777711.1| tRNA modification (thiophene/furan oxidation) GTPase [Herbaspirillum seropedicae SmR1] gi|300076404|gb|ADJ65803.1| tRNA modification (thiophene/furan oxidation) GTPase protein [Herbaspirillum seropedicae SmR1] Length = 479 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 171/471 (36%), Positives = 247/471 (52%), Gaps = 36/471 (7%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M + I A++T I ++RLSG + V + +C + PR A+ F DG Sbjct: 14 MTFDSSPIAAIATAPGRGGIGVVRLSGKNLAPVIQAVCGRASLAPRHATYLPFLNEDGSA 73 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN---LRLANPGEFSRRA 117 +D+GL I FP+P S+TGED E HGG V+ +L + + LRLA PGEF++RA Sbjct: 74 IDQGLAIHFPAPHSYTGEDVLELQGHGGPVVMQMLLARCVQAGSEIGLRLAEPGEFTQRA 133 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F N KIDL +AE++ADLI + TE + + E +SG S + + +D++T +R +EA LD Sbjct: 134 FLNDKIDLAQAEAVADLIEATTEAAAKSASESLSGAFSKVIHELVDQVTRLRMLVEATLD 193 Query: 178 FSEEED--VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 F EEE ++ ++ L I ++ H +QG L +R+G V+ G N GKSSL Sbjct: 194 FPEEEIDFLKQSDARGQLATIRSTLEEVFKHAAQGAL---LRDGLNAVLAGKPNVGKSSL 250 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI------VEKEGI 289 N LA DVAIVT I GTTRD +T + +EG + I DTAGIRE D VE+ GI Sbjct: 251 LNVLAGSDVAIVTPIAGTTRDKVTQTIQIEGMPLNIIDTAGIREAGDDGSGPDEVERIGI 310 Query: 290 KRTFLEVENADLILLLKEINSKKEIS-------FPKNIDFIFIGTKSDLYSTYTEEYDHL 342 +RT+ EV AD+IL + + + + FP + I I K D S + D + Sbjct: 311 ERTWAEVAKADVILHMLDADRGPTLEDEKITSRFPDGVPIIRIWNKID-RSGHKAAVDKM 369 Query: 343 -------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL-----SQTVRYL 390 +S+ G+G++ L ++ I + + + + +RHL L Sbjct: 370 PDATHVYLSASEGQGVDLLRAELLRIAGWQ-QTVESRYLARERHLLALKAADEHLAHAAA 428 Query: 391 EMASLNEK-DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A NE + LD+ AE LRLA L ITG + LL +IFS+FCIGK Sbjct: 429 HAALDNEAGEHALDLFAEELRLAQERLSSITGKFTPDDLLGVIFSRFCIGK 479 >gi|222112656|ref|YP_002554920.1| tRNA modification gtpase trme [Acidovorax ebreus TPSY] gi|221732100|gb|ACM34920.1| tRNA modification GTPase TrmE [Acidovorax ebreus TPSY] Length = 467 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 163/469 (34%), Positives = 243/469 (51%), Gaps = 32/469 (6%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 + + I A++T A+ I+R+SG + + +C + PR+A+ F G+ Sbjct: 2 LPRHSDPIVAIATAPGRGAVGIVRVSGKQIGALVQALCGRALK-PREATYLPFRDAAGQA 60 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAK------MPNLRLANPGEFS 114 +D+GL + FP+P S+TGED E HGG V+ +L + + LRLA PGEF+ Sbjct: 61 IDQGLALYFPAPHSYTGEDVLELQAHGGPVVLQLLLARCLEAATGGVLDRLRLAEPGEFT 120 Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174 RAF N KIDL +AE++ADLI + TE R + +SG+ S D L H+R +EA Sbjct: 121 ERAFLNNKIDLAQAEAIADLIDASTEAAARGASRSLSGDFSREIHTLRDALVHLRMLVEA 180 Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234 LDF EEE + + + L+ ++ + + G ++R G K+VI G NAGKSS Sbjct: 181 TLDFPEEE-IDFLRKADARGQLSNLQQSLARVMQRAGQGALLREGIKVVIAGQPNAGKSS 239 Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294 L NALA ++AIVT I GTTRD + + +EG + + DTAG+RE+DD VE+ GI R + Sbjct: 240 LLNALAGAELAIVTPIAGTTRDKVQQTIQIEGVPLHVIDTAGLRESDDEVERIGIARAWD 299 Query: 295 EVENADLILLLKEINSKKEISF---------------PKNIDFIFIGTKSDLYSTYT--- 336 E+ AD +L L ++ + P + + + K+D Sbjct: 300 EIAGADAVLFLHDLTRWGSAQYQDDDAAIAHTLSTRLPAGVPVVDVWNKADAAPQAAAPA 359 Query: 337 ---EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EM 392 E L+S+ TG+GL+ L ++ I + I + RH+ L +L E Sbjct: 360 REGESQAVLLSARTGQGLDTLRRQLLQIAGWQSAAEGVYI-ARARHIEALRAVDAHLMEA 418 Query: 393 ASLNEKDC-GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A+ E D LD++AE LRLA +L ITG + LL +IFS FCIGK Sbjct: 419 AAQLESDGPALDLLAEELRLAQNALNTITGEFTSDDLLGVIFSSFCIGK 467 >gi|330970320|gb|EGH70386.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. aceris str. M302273PT] Length = 456 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 165/461 (35%), Positives = 249/461 (54%), Gaps = 26/461 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 MN +ETI A++T + I+R+SGP + E I + PR A F G++ Sbjct: 1 MNVPRETIAAIATAQGRGGVGIVRVSGPLAGKAAEAIIGRTLK-PRFAHYGPFVDGTGQV 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGE+ E HGG V++ +L+ ++ + RLA PGEFS RAF N Sbjct: 60 LDEGIALYFPGPNSFTGENVLELQGHGGPIVLDMLLQRCLQLGS-RLARPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + + R ++ + G S +KL +R ++EA +DF E Sbjct: 119 DKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSRRVDNLTEKLISLRIYVEAAIDFPE 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + + VLN + ++ ++S+ + + G ++R+G +VI G NAGKSSL NALA Sbjct: 179 EE-IDFLADGHVLNMLDDVRAELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVT+I GTTRDVL + ++G + + DTAG+R+T D VE G++R + AD Sbjct: 238 GREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTQDQVEMIGVQRALKAIGEAD 297 Query: 301 LILLLKEINSKKEI-----------SFPKNIDFIFIGTKSDL----YSTYTEEYDHLISS 345 ILL+ + + + P I K+DL + T H+ S Sbjct: 298 RILLVVDATAPEAADPFALWPEFLEQRPDPSKVTLIRNKADLSGDPINLQTSVDGHVTIS 357 Query: 346 FT----GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKD 399 + GEGLE L +K+ + + + S + +RHL L LE A L Sbjct: 358 LSARSGGEGLELLREHLKACMGYE-QTSESSFSARRRHLEALRHASDSLEHGRAQLTLAG 416 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G +++AE+LR A +LG+ITG + LL IFS FCIGK Sbjct: 417 AG-ELLAEDLRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 456 >gi|300176248|emb|CBK23559.2| unnamed protein product [Blastocystis hominis] Length = 492 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 159/481 (33%), Positives = 261/481 (54%), Gaps = 57/481 (11%) Query: 16 LPSAISIIRLSGPSCFQVCEFICKKKK--PFPRKASLRYFFGLDGR-ILDKGLLI-VFPS 71 + S +++IR+SG + F + + ++ P PR+ASLR + ++DKGL++ FP Sbjct: 13 VKSGVAVIRVSGSNAFDAIKQMTSEQCSFPTPRQASLRSILDSQTKEVIDKGLVMHRFPL 72 Query: 72 PESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESL 131 SFT ED EFHVHG AVVN L L+ +P R+A PGEF++RAF NGK+ LE E+L Sbjct: 73 SLSFTDEDVVEFHVHGSPAVVNATLRSLSHIPYFRVAEPGEFTKRAFLNGKMSFLEVEAL 132 Query: 132 ADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKE 191 ADL+++ETE QR+ ++ G+SGELS+L +W +L H + E L+F+++ D ++ + Sbjct: 133 ADLLNAETETQRQQAIHGLSGELSALCWKWRSQLMHSLAHAETILEFADDMDEESVLLAD 192 Query: 192 VLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIP 251 + +++ + + + ++++ G ++ + G N GKSSL N L + AIV+ IP Sbjct: 193 ATRQLGSIRDSMQQLLRGFRRSQLVKEGIRVTLFGPPNVGKSSLLNVLTGSEEAIVSAIP 252 Query: 252 GTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL-------- 303 GTTRDVL +DLDLEG+ V + DTAG+ +++++VE+EG+ R V + + + Sbjct: 253 GTTRDVLKVDLDLEGWKVILQDTAGLHDSEEVVEREGMNRARAAVAESSVRMVVVDVARD 312 Query: 304 -------LLKEINSKKEISFPKNI------------------DFIFIGTKSDLYST-YTE 337 +++EI K E + + + + KSDL S E Sbjct: 313 AKENVESMMREIEGKGEAERKGKMGESCLEGKENTKKSQLEGEVLVVLNKSDLVSKEQVE 372 Query: 338 EYDHL-------------ISSFTGEGLEELINKIKSILSNKFKKLP----FSIPSHKRHL 380 E IS +G+E ++ +K ++ + + + +R Sbjct: 373 EVREFVLNKYPFVQNVLSISCKQKQGIEAVLTALKEVVGRVAHENTEGDHSQLITRERQR 432 Query: 381 YHLSQTVRYLEMA-SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIG 439 L Q + ++ L+E+D +D+ AE LR SL ++TG VDVE++LDI+FS+FCIG Sbjct: 433 NCLEQCISSIDRCMELSEEDL-VDLEAEELRYCLKSLSRLTGEVDVEEILDIVFSEFCIG 491 Query: 440 K 440 K Sbjct: 492 K 492 >gi|269103815|ref|ZP_06156512.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Photobacterium damselae subsp. damselae CIP 102761] gi|268163713|gb|EEZ42209.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Photobacterium damselae subsp. damselae CIP 102761] Length = 455 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 164/459 (35%), Positives = 244/459 (53%), Gaps = 23/459 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 MN +TI A +T + IIR+SGP +V ++ PR A F DG Sbjct: 1 MNQHTDTIVAQATPPGRGGVGIIRVSGPKAKEVA-LAVAGRELRPRYAEYLPFKNEDGTA 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + F P SFTGED E HGG +++ ++ + + +R A PGEFS RAF N Sbjct: 60 LDQGIALFFKGPNSFTGEDVLELQGHGGPVLMDMLIRRILTLDGIRPARPGEFSERAFMN 119 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + +E + + + + G S+ + ++ L ++R ++EA +DF E Sbjct: 120 DKLDLAQAEAIADLIDASSEEAAKSAFQSLQGAFSTRVNELVESLIYLRMYVEAAIDFPE 179 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + S +V D+ + + + + + G I+R G K+VI G NAGKSSL NAL+ Sbjct: 180 EE-IDFLSDGKVSGDLNRIIDRLEAVRKEANQGSIMREGMKVVIAGRPNAGKSSLLNALS 238 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 KD AIVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+ AD Sbjct: 239 GKDSAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWDEILQAD 298 Query: 301 LILLL-----KEINSKKEI------SFPKNIDFIFIGTKSDLYSTYTEEYDHL------- 342 +L + + KEI P+N+ I K +L H+ Sbjct: 299 RVLFMVDGTTTDATDPKEIWPDFIERLPENMGLTVIRNKIELTGEQA-GICHVNNPTLIR 357 Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCG 401 +S+ TGEG++ L +K + + +RHL L + +LE+ S E Sbjct: 358 LSALTGEGVDSLRQHLKECMGFS-GTTEGGFMARRRHLDALERAAEHLEIGKSQLEGYMA 416 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +I+AE LRLA L +ITG + LL IF+ FCIGK Sbjct: 417 GEILAEELRLAQQHLSEITGEFTSDDLLGRIFTSFCIGK 455 >gi|237747089|ref|ZP_04577569.1| tRNA modification GTPase mnmE [Oxalobacter formigenes HOxBLS] gi|229378440|gb|EEO28531.1| tRNA modification GTPase mnmE [Oxalobacter formigenes HOxBLS] Length = 462 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 169/465 (36%), Positives = 251/465 (53%), Gaps = 28/465 (6%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQ-VCEFI--CKKKKPF-PRKASLRYFFGL 56 MN + I A++T + I+R+SG + + EF K P PR A F Sbjct: 1 MNTDSSPIAAIATAPGRGGVGIVRISGKNLEPFISEFFRAASKDLPLKPRYAHFLPFLDA 60 Query: 57 DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEF 113 DG I+D+G+ + F +P SFTGED E HGG V+ +L+ ++ K LR+A PGEF Sbjct: 61 DGNIIDEGIALYFKAPHSFTGEDVLELQGHGGPVVLQMVLKRCLQVGKTIQLRIAEPGEF 120 Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173 +RRAF N +IDL +AE++ADLI + TE R + +SG S + +R +E Sbjct: 121 TRRAFLNDRIDLAQAEAIADLIDATTEEAVRSASRSLSGVFSKEIRDLASAIIQLRMMVE 180 Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233 + LDF EE D+ + V I+ ++ + ISQ G ++R G +V+ G +N GKS Sbjct: 181 SSLDFPEE-DIDFLKKENVKEKIISIRESLRGIISQAAQGALLREGIHVVLAGQTNVGKS 239 Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET--DDIVEKEGIKR 291 SL N L D+AIVT + GTTRD +T + LEG V + DTAGIR + +D VE+ GI+R Sbjct: 240 SLLNVLTGSDIAIVTPVAGTTRDKITETIQLEGIPVTLIDTAGIRPSTAEDEVERIGIER 299 Query: 292 TFLEVENADLILLLKEI-------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL-- 342 + E+E AD+IL L + + K FP NI I I K D+ S + D++ Sbjct: 300 AWTEIEKADVILHLLDASLGPTRSDEKIAADFPPNIPVIQIWNKIDI-SGHRPSTDNMFG 358 Query: 343 -----ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN- 396 +S+ TGEG++ L ++ I + + + + +RHL + +L +A+ + Sbjct: 359 ITQVYLSTQTGEGIDLLKTELLKI-AGWVQTGESTYLARERHLTAMKMADTHLAIATEHA 417 Query: 397 -EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LD++AE LRLA +L ITG + LL +IFS+FCIGK Sbjct: 418 VSGSPSLDLLAEELRLAQDALNSITGEFTSDDLLGLIFSRFCIGK 462 >gi|156972770|ref|YP_001443677.1| tRNA modification GTPase TrmE [Vibrio harveyi ATCC BAA-1116] gi|166234831|sp|A7N0X8|MNME_VIBHB RecName: Full=tRNA modification GTPase mnmE gi|156524364|gb|ABU69450.1| hypothetical protein VIBHAR_00435 [Vibrio harveyi ATCC BAA-1116] Length = 453 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 164/457 (35%), Positives = 247/457 (54%), Gaps = 29/457 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVC-EFICKKKKPFPRKASLRYFFGLDGRILDKG 64 +TI A +T + IIR+SGP QV E K KP R A F DG +LD+G Sbjct: 4 DTIVAQATAPGRGGVGIIRVSGPKANQVALEVTGKTLKP--RYAEYLPFQAEDGTVLDQG 61 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 + + FP+P SFTGED E HGG V++ +++ + + +R A PGEFS RAF N K+D Sbjct: 62 IALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILGIDGVRAARPGEFSERAFLNDKMD 121 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ADLI + +E + +++ + G+ S ++ L H+R ++EA +DF EEE + Sbjct: 122 LTQAEAIADLIDASSEEAAKSALQSLQGQFSQRIQTLVESLIHLRIYVEAAIDFPEEE-I 180 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + +V D+ + +++ + + G I+R G K+VI G NAGKSSL NAL+ K+ Sbjct: 181 DFLADGKVSGDLQAIIDNLDAVRKEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKES 240 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIVTDI GTTRDVL + ++G + I DTAG+R+ D VEK GI+R + E+ AD +L Sbjct: 241 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVEKIGIERAWDEIAQADRVLF 300 Query: 305 L-----KEINSKKEI------SFPKNIDFIFIGTKSDLYSTYTEEYD--HL-------IS 344 + + K+I P +I I K+D EE H+ +S Sbjct: 301 MVDGTTTDATDPKDIWPDFVDRLPNSIGMTVIRNKADQTG---EEMGICHVNDPTLIRLS 357 Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLD 403 + TG G++ L +K + + +RHL L + ++L++ E + Sbjct: 358 AKTGAGVDALRTHLKECMGFS-GNTEGGFMARRRHLDALERAAQHLQIGQEQLEGYMAGE 416 Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 I+AE LR+ L +ITG + LL IFS FCIGK Sbjct: 417 ILAEELRITQQHLNEITGEFSSDDLLGRIFSSFCIGK 453 >gi|190171182|gb|ACE63661.1| ThdF [Enterobacter amnigenus] Length = 439 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 155/435 (35%), Positives = 239/435 (54%), Gaps = 23/435 (5%) Query: 18 SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77 + I+R+SG +V E + K P PR A F DG LD+G+ + FP P SFTG Sbjct: 9 GGVGILRISGLKAREVAEAVLGKL-PKPRYADYLPFKDADGTALDQGIALWFPGPNSFTG 67 Query: 78 EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137 ED E HGG +++ +L+ + +P LR+A PGEFS RAF N K+DL +AE++ADLI + Sbjct: 68 EDVLELQGHGGPVILDLLLKRILTLPGLRIAKPGEFSERAFLNDKLDLAQAEAIADLIDA 127 Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197 +E R ++ + G S+ ++ LTH+R ++EA +DF +EE + S ++ + Sbjct: 128 SSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE-IDFLSDGKIEAQLN 186 Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257 + D+ + ++ + G ++R G K+VI G NAGKSSL NALA ++ AIVTDI GTTRDV Sbjct: 187 TVMADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDV 246 Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS-- 315 L + ++G + I DTAG+R+ D VE+ GI+R + E+E AD +L + + + + Sbjct: 247 LREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWHEIEQADRVLFMVDGTTTSAVDPA 306 Query: 316 ---------FPKNIDFIFIGTKSDLYSTYTEEYD---H---LISSFTGEGLEELINKIKS 360 P + + K+D+ D H +S+ TGEG+E+L N +K Sbjct: 307 DIWPDFIARLPAKLPITVVRNKADMTGETLGLSDVNGHSLIRLSARTGEGIEDLRNHLKQ 366 Query: 361 ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSLGK 418 + + + + +RHL L +L+ A L G +++AE LRLA SL + Sbjct: 367 SMGFE-TNMEGGFLARRRHLQALEAAANHLDQGKAQLLGAWAG-ELLAEELRLAQQSLSE 424 Query: 419 ITGCVDVEQLLDIIF 433 ITG + LL IF Sbjct: 425 ITGEFTSDDLLGRIF 439 >gi|71735987|ref|YP_277292.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. phaseolicola 1448A] gi|123634468|sp|Q48BF3|MNME_PSE14 RecName: Full=tRNA modification GTPase mnmE gi|71556540|gb|AAZ35751.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. phaseolicola 1448A] gi|320321683|gb|EFW77782.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. glycinea str. B076] gi|320331115|gb|EFW87086.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. glycinea str. race 4] gi|330881913|gb|EGH16062.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. glycinea str. race 4] Length = 456 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 165/461 (35%), Positives = 247/461 (53%), Gaps = 26/461 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 MN +ETI A++T + I+R+SGP + E I + PR A F G++ Sbjct: 1 MNVPRETIAAIATAQGRGGVGIVRVSGPLAGRAAEAIIGRTLK-PRFAHYGPFVDDAGQV 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG V++ +L+ ++ + RLA PGEFS RAF N Sbjct: 60 LDEGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQLGS-RLARPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + + R ++ + G S +KL +R ++EA +DF E Sbjct: 119 DKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSRRVDNLTEKLISLRIYVEAAIDFPE 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + + VLN + ++ ++S+ + + G ++R+G +VI G NAGKSSL NALA Sbjct: 179 EE-IDFLADGHVLNMLDDVRAELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVT+I GTTRDVL + ++G + + DTAG+R+T D VE G++R + AD Sbjct: 238 GREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTQDQVEMIGVQRALKAIGEAD 297 Query: 301 LILLLKEINSKKEI-----------SFPKNIDFIFIGTKSDLYST----YTEEYDHLISS 345 ILL+ + + + P I K+DL T H+ S Sbjct: 298 RILLVVDATAPEAADPFALWPEFLEQRPDPAKVTLIRNKADLSGDPIDLQTSVDGHVTIS 357 Query: 346 FT----GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKD 399 + G GLE L +K+ + + + S + +RHL L LE A L Sbjct: 358 LSARSGGAGLELLREHLKACMGYE-QTSESSFSARRRHLEALRHASDSLEHGRAQLTLAG 416 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G +++AE+LR A +LG+ITG + LL IFS FCIGK Sbjct: 417 AG-ELLAEDLRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 456 >gi|170106165|ref|XP_001884294.1| predicted protein [Laccaria bicolor S238N-H82] gi|164640640|gb|EDR04904.1| predicted protein [Laccaria bicolor S238N-H82] Length = 527 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 158/468 (33%), Positives = 250/468 (53%), Gaps = 37/468 (7%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFI----CKKKK-----PFPRKAS-LRYF 53 ++ TI+A+ST + +++IR+SGP V + CK+K P P K R Sbjct: 66 QRRTIYALSTPPGKAGVAVIRVSGPEALDVWRRVIQPTCKRKALADYIPTPWKMERCRVV 125 Query: 54 FGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEF 113 +LD GL + F +P SFT ED E H+H G A+V +L LA +P+ R A PGEF Sbjct: 126 HPETQEMLDDGLAVYFRAPHSFTTEDVVELHIHSGRAIVASVLGSLALLPSCRPAEPGEF 185 Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173 +RRAF G++DL + E L DLI +ET+ QRR++++ + ++ + + + + IE Sbjct: 186 TRRAFLGGRLDLTQVEGLKDLIDAETDAQRRIALQAAG--VGEIFDELRKGIINCLAQIE 243 Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233 A +DF E ED++ E L + + +++ + GE++R+G ++ I G NAGKS Sbjct: 244 ALIDFGEGEDIEEGVYDEARIQGKVLLDTMKLYLNDHRRGELMRSGLRLAIFGPPNAGKS 303 Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293 SL N L K AIVT IPGTTRD+L + LD+ G V ++DTAG+R T+D+VE G++R Sbjct: 304 SLLNFLGKLQAAIVTSIPGTTRDILELSLDIGGLPVIVADTAGLRHTEDVVESIGVERAR 363 Query: 294 LEVENADLILLL--------------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY 339 V+ D+ L + + I+S +++ P+ F+ KSDL + Sbjct: 364 NAVKATDIALCVLSLPETLDSQSGMKESIHSLRDLISPET---FFLFNKSDLLGQSSRGL 420 Query: 340 -------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM 392 D+L+ + + S+ ++ + + + RH HL ++LE Sbjct: 421 PDPEDLRDNLLGNQHHNSKSGQRAWVASLSTDNWTPSQTPLITRARHRTHLESACQFLE- 479 Query: 393 ASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A L + + AE LR A+V++GK+TG +DVE +LD +F FCIGK Sbjct: 480 AFLELPPEDVVLAAEELRYAAVAVGKVTGHIDVEDILDAVFRDFCIGK 527 >gi|70733512|ref|YP_263287.1| tRNA modification GTPase TrmE [Pseudomonas fluorescens Pf-5] gi|123651832|sp|Q4K396|MNME_PSEF5 RecName: Full=tRNA modification GTPase mnmE gi|68347811|gb|AAY95417.1| tRNA modification GTPase TrmE [Pseudomonas fluorescens Pf-5] Length = 456 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 162/461 (35%), Positives = 251/461 (54%), Gaps = 26/461 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 MN +ETI A++T + I+R+SGP + I ++ PR A F + Sbjct: 1 MNVPRETIAAIATAQGRGGVGIVRISGPLAGAAAKAISGRELK-PRFAHYGPFLSEQEEV 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+++ FP P SFTGED E HGG V++ +L+ ++ RLA PGEFS RAF N Sbjct: 60 LDEGIVLYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLEL-GCRLARPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + + R ++ + G S ++L +R ++EA +DF E Sbjct: 119 DKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSQRVYNLTEQLIALRIYVEAAIDFPE 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + + VL+ + +++++S+ + + G ++R+G +VI G NAGKSSL NALA Sbjct: 179 EE-IDFLADGHVLSMLDAVRDELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRD+L + ++G + + DTAG+R+T+D VEK G++R + AD Sbjct: 238 GREAAIVTDIAGTTRDILREHIHIDGMPLHVVDTAGLRDTEDQVEKIGVERALKAISEAD 297 Query: 301 LILLLKEINSKKEI-----------SFPKNIDFIFIGTKSDLY----STYTEEYDHLISS 345 +LL+ + + + P I K+DL + T + H+ S Sbjct: 298 RVLLVVDATAAEAADPFALWPEFLEQRPDPAKVTLIRNKADLTGEPIALETCDDGHVTIS 357 Query: 346 FT----GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKD 399 + G GLE L + +K+ + + + S + +RHL L LE A L Sbjct: 358 LSAMAAGSGLELLRDHLKACMGYE-QTSESSFSARRRHLEALHYASAALEHGRAQLTLAG 416 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G +++AE+LR A SLG+ITG + LL IFS FCIGK Sbjct: 417 AG-ELLAEDLRQAQQSLGEITGAFSSDDLLGRIFSSFCIGK 456 >gi|153835787|ref|ZP_01988454.1| tRNA modification GTPase TrmE [Vibrio harveyi HY01] gi|148867486|gb|EDL66856.1| tRNA modification GTPase TrmE [Vibrio harveyi HY01] Length = 453 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 164/457 (35%), Positives = 247/457 (54%), Gaps = 29/457 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVC-EFICKKKKPFPRKASLRYFFGLDGRILDKG 64 +TI A +T + IIR+SGP QV E K KP R A F DG +LD+G Sbjct: 4 DTIVAQATAPGRGGVGIIRVSGPKANQVALEVTGKTLKP--RYAEYLPFQAEDGTVLDQG 61 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 + + FP+P SFTGED E HGG V++ +++ + + +R A PGEFS RAF N K+D Sbjct: 62 VALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILGIDGVRAARPGEFSERAFLNDKMD 121 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ADLI + +E + +++ + G+ S ++ L H+R ++EA +DF EEE + Sbjct: 122 LTQAEAIADLIDASSEEAAKSALQSLQGQFSQRIQTLVESLIHLRIYVEAAIDFPEEE-I 180 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + +V D+ + +++ + + G I+R G K+VI G NAGKSSL NAL+ K+ Sbjct: 181 DFLADGKVSGDLQAIIDNLDAVRKEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKES 240 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIVTDI GTTRDVL + ++G + I DTAG+R+ D VEK GI+R + E+ AD +L Sbjct: 241 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVEKIGIERAWDEIAQADRVLF 300 Query: 305 L-----KEINSKKEI------SFPKNIDFIFIGTKSDLYSTYTEEYD--HL-------IS 344 + + K+I P +I I K+D EE H+ +S Sbjct: 301 MVDGTTTDATDPKDIWPDFVDRLPNSIGMTVIRNKADQTG---EEMGICHVNDPTLIRLS 357 Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLD 403 + TG G++ L +K + + +RHL L + ++L++ E + Sbjct: 358 AKTGAGVDALRTHLKECMGFS-GNTEGGFMARRRHLDALERAAQHLQIGQEQLEGYMAGE 416 Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 I+AE LR+ L +ITG + LL IFS FCIGK Sbjct: 417 ILAEELRITQQHLNEITGEFSSDDLLGRIFSSFCIGK 453 >gi|269962685|ref|ZP_06177030.1| tRNA modification GTPase [Vibrio harveyi 1DA3] gi|269832608|gb|EEZ86722.1| tRNA modification GTPase [Vibrio harveyi 1DA3] Length = 453 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 163/455 (35%), Positives = 251/455 (55%), Gaps = 25/455 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVC-EFICKKKKPFPRKASLRYFFGLDGRILDKG 64 +TI A +T + IIR+SGP QV E K KP R A F DG +LD+G Sbjct: 4 DTIVAQATAPGRGGVGIIRVSGPKANQVALEVTGKTLKP--RYAEYLPFQAEDGTVLDQG 61 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 + + FP+P SFTGED E HGG V++ +++ + + +R A PGEFS RAF N K+D Sbjct: 62 IALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILGIDGVRAARPGEFSERAFLNDKMD 121 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ADLI + +E + +++ + G+ S ++ L H+R ++EA +DF EEE + Sbjct: 122 LTQAEAIADLIDASSEEAAKSALQSLQGQFSQRIQTLVESLIHLRIYVEAAIDFPEEE-I 180 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + +V D+ + +++ + + G I+R G K+VI G NAGKSSL NAL+ K+ Sbjct: 181 DFLADGKVSGDLQTIIDNLDAVRKEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKES 240 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIVTDI GTTRDVL + ++G + I DTAG+R+ D VEK GI+R + E+ AD +L Sbjct: 241 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVEKIGIERAWDEIAQADRVLF 300 Query: 305 LKEINSKKEISFPKNI--DFI-----FIG----------TKSDLYSTYTEEYDHL-ISSF 346 + + + + + PK+I DF+ IG T D+ + + + +S+ Sbjct: 301 MVD-GTTTDATDPKDIWPDFVDRLPNSIGMTVIRNKADQTGEDMGICHVNDPTLIRLSAK 359 Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDII 405 TG G++ L +K + + +RHL L + ++L++ E +I+ Sbjct: 360 TGAGVDALRTHLKECMGFS-GNTEGGFMARRRHLDALERAAQHLQIGQEQLEGYMAGEIL 418 Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 AE LR+ L +ITG + LL IFS FCIGK Sbjct: 419 AEELRITQQHLNEITGEFSSDDLLGRIFSSFCIGK 453 >gi|148245045|ref|YP_001219739.1| tRNA modification GTPase TrmE [Candidatus Vesicomyosocius okutanii HA] gi|166234830|sp|A5CVJ3|MNME_VESOH RecName: Full=tRNA modification GTPase mnmE gi|146326872|dbj|BAF62015.1| tRNA modification GTPase [Candidatus Vesicomyosocius okutanii HA] Length = 447 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 168/454 (37%), Positives = 253/454 (55%), Gaps = 21/454 (4%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK---PFPRKASLRYFFGLD 57 MN K TI A+++ I I+R+SGP +C+ I KK P PR A FF + Sbjct: 1 MNSSKTTICALASSVGKGGIGIVRVSGP----LCKVIAKKMLGFIPKPRYAYYGLFFDQE 56 Query: 58 GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 +DKG+ + FP P SFTGED EF HGG+ + +LE M +LA GEFS+R+ Sbjct: 57 STEIDKGIALFFPKPYSFTGEDVLEFQGHGGMIGMRLLLESAISM-GAKLAESGEFSKRS 115 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NGK+DL++AE+++D+I++ ++ + + +SG+ S+ + +R F+EA +D Sbjct: 116 FLNGKMDLVQAEAISDMINANSKRASKSAFRSLSGDFSNQINGLTKSIIELRVFVEATID 175 Query: 178 FSEEE-DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 FS+EE D F +V I +K I + + G I+R G + I G NAGKSSL Sbjct: 176 FSDEEIDFLQFD--QVKCKIKDIKQTIETILKSATQGIILREGLNVAIAGKPNAGKSSLL 233 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 NAL ++ AIVTDI GTTRDVL + + G + I DTAG+R + D +EKEGIKR E+ Sbjct: 234 NALTQESSAIVTDIAGTTRDVLKETIHVNGVPLSIIDTAGLRNSHDKIEKEGIKRANFEI 293 Query: 297 ENADLILLLKEI-NSKKEIS-FPKNID---FIFIGTKSDLYSTYT--EEYDHLISSFTGE 349 E+AD++L++ + + K ++S PKNI+ + I K DL S E + ++ Sbjct: 294 EHADVVLMVFDAQDDKPDLSILPKNINDQSLLLIKNKVDLTSGAIKREVINDIVQLSVSA 353 Query: 350 GLEELINKIKSILSNKFKKLPFS---IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIA 406 E I ++ LSN S + + +RH+ L ++ + A + + ++++A Sbjct: 354 KYSEGIKLLRKELSNISGLEDLSEGVVLARRRHIIALEASLVSIGNAIMQLEIGAIELMA 413 Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E+LR A +G ITG + LLD IFS FCIGK Sbjct: 414 EDLRFAGQFMGSITGEFSSDDLLDEIFSSFCIGK 447 >gi|169635760|emb|CAQ16333.1| t-RNA modification GTPase protein [Halomonas cupida] Length = 458 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 162/463 (34%), Positives = 250/463 (53%), Gaps = 28/463 (6%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+ ETI AV+T P + I+R+SGP + +++ PR A F+G + + Sbjct: 1 MSVAAETIAAVATAQGPGGVGIVRISGP-LASIAAKAFSERELKPRYAHYGPFYGENREV 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG V++ +L+ ++ RLA PGEFS RAF N Sbjct: 60 LDEGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCIQL-GCRLARPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + + R ++ + G S ++L +R ++EA +DF E Sbjct: 119 DKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSQRVHNLTEQLIGLRIYVEAAIDFPE 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + + VL + ++ ++S+ + + G ++R+G +VI G NAGKSSL +ALA Sbjct: 179 EE-IDFLADGHVLGMLDTVRQELSTVMREAGQGALLRDGMTVVIAGRPNAGKSSLLDALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVT+I GTTRDVL + ++G + + DTAG+R+TDD VEK G++R + AD Sbjct: 238 GREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTDDQVEKIGVQRALKAIGEAD 297 Query: 301 LILLLKEINSKKE-----------ISFPKNIDFIFIGTKSDLYSTYTE----EYDHLISS 345 +LL+ + + + P I K+DL + H+ S Sbjct: 298 RVLLVVDATAPEADDPFALWPEFLQQRPDPAKVTLIRNKADLTGEDIRLQVCDDGHVTIS 357 Query: 346 FT------GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNE 397 + G+GLE L + +K+ + + + S + +RHL L LE A L Sbjct: 358 LSARSTDAGDGLELLRDHLKACMGYE-QTSESSFSARRRHLEALRHASDALEHGRAQLTL 416 Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G +++AE+LR A SLG+ITG + LL IFS FCIGK Sbjct: 417 AGAG-ELLAEDLRQAQHSLGEITGAFSSDDLLGRIFSSFCIGK 458 >gi|54307239|ref|YP_128259.1| tRNA modification GTPase TrmE [Photobacterium profundum SS9] gi|81828901|sp|Q6LW56|MNME_PHOPR RecName: Full=tRNA modification GTPase mnmE gi|46911659|emb|CAG18457.1| Putative thiophene and furan oxidation protein ThdF [Photobacterium profundum SS9] Length = 455 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 166/460 (36%), Positives = 250/460 (54%), Gaps = 25/460 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 MN +TI A +T + IIR+SGP +V + ++ R A F DG Sbjct: 1 MNEYTDTIVAQATPPGRGGVGIIRVSGPKAKEVALAVAGRELK-TRYAEYLPFKNEDGSA 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + F P SFTGED E HGG +++ ++ + K+ +R A PGEFS RAF N Sbjct: 60 LDQGIALFFKGPNSFTGEDVLELQGHGGPVLMDMMIRRILKLEGIRPARPGEFSERAFMN 119 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + +E + + + G S+ + ++ + H+R ++EA +DF E Sbjct: 120 DKLDLAQAEAIADLIDASSEEAAKSAFRSLQGAFSTKVNELVEAVIHLRIYVEAAIDFPE 179 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + S +V ND+ + +++ + + G IIR G K+VI G NAGKSSL NAL+ Sbjct: 180 EE-IDFLSDGKVSNDLHGIIDNLEAVRREANQGSIIREGMKVVIAGRPNAGKSSLLNALS 238 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 KD AIVTDI GTTRDVL + ++G + I DTAG+RE + VE+ GI+R + E++ AD Sbjct: 239 GKDSAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASNEVERIGIERAWEEIQQAD 298 Query: 301 LILLLKEINSKKEISFPKNI--DFI----------FIGTKSDLYSTYTEEYDHL------ 342 +L + + + + PK+I DFI I K +L + H+ Sbjct: 299 RVLFMVDGTTTNDTD-PKDIWPDFIERLPESMGLTVIRNKVEL-TGEAAGICHVNNPPLI 356 Query: 343 -ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDC 400 +S+ TGEG++ L +K + + +RHL L Q ++LE+ E Sbjct: 357 RLSARTGEGIDSLREHLKDCMGFS-GTTEGGFMARRRHLEALEQAAQHLEIGKEQLEGFM 415 Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +I+AE LRLA L +ITG + LL IF+ FCIGK Sbjct: 416 AGEILAEELRLAQQHLSEITGEFTSDDLLGRIFTSFCIGK 455 >gi|330976397|gb|EGH76454.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 456 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 166/461 (36%), Positives = 248/461 (53%), Gaps = 26/461 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 MN +ETI A++T + I+R+SGP + E I + PR A F G++ Sbjct: 1 MNVPRETIAAIATAQGRGGVGIVRVSGPLAGKAAEAIIGRTLK-PRFAHYGPFVDDAGQV 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG V++ +L+ ++ + RLA PGEFS RAF N Sbjct: 60 LDEGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQLGS-RLARPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + + R ++ + G S +KL +R ++EA +DF E Sbjct: 119 DKLDLAQAEAIADLIEAISAQAARNALRSLQGAFSRRVDNLTEKLISLRIYVEAAIDFPE 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + + VLN + ++ ++S+ + + G ++R+G +VI G NAGKSSL NALA Sbjct: 179 EE-IDFLADGHVLNMLDDVRAELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVT+I GTTRDVL + ++G + + DTAG+R+T D VE G++R + AD Sbjct: 238 GREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTQDQVEMIGVQRALKAIGEAD 297 Query: 301 LILLLKEINSKKEI-----------SFPKNIDFIFIGTKSDLYST----YTEEYDHLISS 345 ILL+ + + + P I K+DL T H+ S Sbjct: 298 RILLVVDATAPEAADPFALWPEFLEQRPDPSKVTLIRNKADLSGDPVDLQTSVDGHVTIS 357 Query: 346 FT----GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKD 399 + GEGLE L +K+ + + + S + +RHL L LE A L Sbjct: 358 LSARSGGEGLELLREHLKACMGYE-QTSESSFSARRRHLEALRHASDSLEHGRAQLTLAG 416 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G +++AE+LR A +LG+ITG + LL IFS FCIGK Sbjct: 417 AG-ELLAEDLRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 456 >gi|330812748|ref|YP_004357210.1| tRNA modification GTPase, TrmE [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327380856|gb|AEA72206.1| putative tRNA modification GTPase, TrmE [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 456 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 165/462 (35%), Positives = 252/462 (54%), Gaps = 28/462 (6%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+ +ETI AV+T + I+R+SGP + I ++ PR A FF D ++ Sbjct: 1 MSAPRETIAAVATAQGRGGVGIVRISGPLASVAAKAISGRELK-PRFAHYGPFFSDDQQV 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+GL + FP P SFTGED E HGG V++ +L+ ++ RLA PGEFS RAF N Sbjct: 60 LDEGLALYFPGPNSFTGEDVLELQGHGGPVVLDMLLKRCLEL-GCRLARPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + + R ++ + G S ++L +R ++EA +DF E Sbjct: 119 DKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSLRVHNLTEQLIGLRIYVEAAIDFPE 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + + VL+ + +++++S+ + + G ++R+G +VI G NAGKSSL NALA Sbjct: 179 EE-IDFLADGHVLSMLDKVRDELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVT+I GTTRD+L + ++G + + DTAG+R+T+D VEK G++R + AD Sbjct: 238 GREAAIVTEIAGTTRDILREHIHIDGMPLHVVDTAGLRDTEDQVEKIGVERALKAIGEAD 297 Query: 301 LILLLKEINSKK------------EISFPKNIDFIFIGTKSDLYSTY----TEEYDHLIS 344 +LL+ + + + E+ P I K+DL H+ Sbjct: 298 RVLLVVDATAPEADDPFALWPEFLEVR-PDPAKVTLIRNKADLTGEAIVLEVSNDGHVTI 356 Query: 345 SFT----GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEK 398 S + GEGLE L +K+ + + + S + +RHL L LE A L Sbjct: 357 SLSAKAAGEGLELLREHLKACMGYE-QTSESSFSARRRHLEALRHASAALEHGRAQLTLA 415 Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G +++AE+LR A SLG+ITG + LL IFS FCIGK Sbjct: 416 GAG-ELLAEDLRQAQHSLGEITGAFSSDDLLGRIFSSFCIGK 456 >gi|83950775|ref|ZP_00959508.1| tRNA modification GTPase [Roseovarius nubinhibens ISM] gi|83838674|gb|EAP77970.1| tRNA modification GTPase [Roseovarius nubinhibens ISM] Length = 391 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 153/405 (37%), Positives = 224/405 (55%), Gaps = 22/405 (5%) Query: 43 PFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKM 102 P R S+R D +LD+ L++ F + SFTGE++ EF VHG +A++ +L L +M Sbjct: 2 PARRVGSVRLLRQGD-EVLDEALILTFDAGHSFTGEETVEFQVHGSVAIIGALLARLGEM 60 Query: 103 PNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWI 162 P LR A PGEF+RRA EN ++DL + E LADL+ SETE QRR +M+ SG L W Sbjct: 61 PGLRQAEPGEFTRRALENERLDLAQIEGLADLLESETEAQRRQAMKMFSGALGQKAEGWR 120 Query: 163 DKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI 222 KL + +E +DF++EE V EV+ + + ++ I+ E IR G+++ Sbjct: 121 GKLIRAMALLEVTIDFADEE-VPEDVYPEVIAVLDGVMAELRVEITGVAAAERIRTGFEV 179 Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282 I+G N GKS+L N LA +D AI +D+ GTTRDV+ + +D+ G V DTAG+RET+D Sbjct: 180 AIVGAPNVGKSTLLNGLAGRDAAITSDVAGTTRDVIEVRMDVAGLPVTFLDTAGLRETED 239 Query: 283 IVEKEGIKRTFLEVENADL-ILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH 341 +VE GI R ADL + LL + + E++ + I + K+D+ Sbjct: 240 VVESVGIARAKERAAQADLRVFLLDDPSQGAELAEEGD---ILLQAKADVAGGSFPG--- 293 Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401 +S TG G+ ELI I LS++ + +H RH L + LE A +D Sbjct: 294 -VSGKTGAGIAELITAISERLSSRVAH--AGVATHLRHKRALQEGCDALEQA----RDLM 346 Query: 402 L------DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L +I+AE +R A +L + G VDVE +LD +FS FC+GK Sbjct: 347 LQNVEMSEIVAEEIRRAVYALDSLVGRVDVEAILDEVFSSFCLGK 391 >gi|190171242|gb|ACE63691.1| ThdF [Enterobacter sp. OD1121_04] Length = 439 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 154/435 (35%), Positives = 240/435 (55%), Gaps = 23/435 (5%) Query: 18 SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77 + I+R+SG +V E + K P PR A F DG LD+G+ + FP P SFTG Sbjct: 9 GGVGILRISGLKAREVAEAVLGKL-PKPRYADYLPFKDTDGTPLDQGIALWFPGPNSFTG 67 Query: 78 EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137 ED E HGG +++ +L+ + +P LR+A PGEFS RAF N K+DL +AE++ADLI + Sbjct: 68 EDVLELQGHGGPVILDLLLKRILTLPGLRIAKPGEFSERAFLNDKLDLAQAEAIADLIDA 127 Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197 +E R ++ + G S+ ++ LTH+R ++EA +DF +EE + S ++ + Sbjct: 128 SSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE-IDFLSDGKIEAQLN 186 Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257 + D+ + ++ + G ++R G K+VI G NAGKSSL NALA ++ AIVTDI GTTRDV Sbjct: 187 SVMADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDV 246 Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS-- 315 L + ++G + I DTAG+R+ D VE+ GI+R + E+E AD +L + + + + Sbjct: 247 LREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPA 306 Query: 316 ---------FPKNIDFIFIGTKSDLYSTY---TEEYDH---LISSFTGEGLEELINKIKS 360 P + + K+D+ +E H +S+ TGEG+++L N +K Sbjct: 307 DIWPDFIARLPAKLPITVVRNKADVTGETLGISEVNGHSLIRLSARTGEGVDDLRNHLKQ 366 Query: 361 ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSLGK 418 + + + +RHL L R+L+ A L G +++AE LRLA +L + Sbjct: 367 SMGFD-TSMEGGFLARRRHLQALEDAARHLDQGKAQLLGAWAG-ELLAEELRLAQQNLSE 424 Query: 419 ITGCVDVEQLLDIIF 433 ITG + LL IF Sbjct: 425 ITGEFTSDDLLGRIF 439 >gi|77361917|ref|YP_341492.1| tRNA modification GTPase TrmE [Pseudoalteromonas haloplanktis TAC125] gi|123589159|sp|Q3IK56|MNME_PSEHT RecName: Full=tRNA modification GTPase mnmE gi|76876828|emb|CAI88050.1| enzyme adding cmnm(5) to tRNA-s(2)U34, forming (with subsequent MnmG action) cmnm(5)s(2)U34-tRNA, an intermediate in mnm(5)s(2)U34-tRNA synthesis [Pseudoalteromonas haloplanktis TAC125] Length = 454 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 166/460 (36%), Positives = 248/460 (53%), Gaps = 33/460 (7%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64 ++TI A +T + IIR+SG V E + K P R A F L G LD+G Sbjct: 4 QDTIAAQATAPGRGGVGIIRVSGSLAKSVAEKVVGKI-PKVRYADYVPFKSLAGEQLDQG 62 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 + I F P SFTGED E HGG V++ +L+E++K+ +RLA PGEFS RAF N K+D Sbjct: 63 IAIYFAGPNSFTGEDVLELQGHGGPVVLDMLLKEISKIEGVRLAKPGEFSERAFMNDKLD 122 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ADLI++ +E + +++ + GE S ++K+ H+R ++EA +DF +EE + Sbjct: 123 LTQAEAIADLINATSEQAAKSALQSLQGEFSKHIETLVEKVIHLRMYVEAAIDFPDEE-I 181 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 S +V D+ + +++ Q K G I+R G ++VI G NAGKSSL NALA ++ Sbjct: 182 DFLSDGKVSGDLDAIIAQLNTVTDQAKQGSIMREGMRVVIAGRPNAGKSSLLNALAGREA 241 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIVT+I GTTRDVL + ++G + I DTAG+RE+ D+VE+ GI+R + E+ AD +L Sbjct: 242 AIVTEIAGTTRDVLREHIHIDGMPLHIIDTAGLRESPDLVEQIGIERAWDEINQADRVLF 301 Query: 305 L-----------KEINSKKEISFPKNIDFIFIGTKSDLYSTYT-----EEYDHL-ISSFT 347 + +I + P + I K+DL ++Y + +S+ Sbjct: 302 MLDGTDTIDTDPHKIWPEFMAKLPVGLGVTVIRNKADLSGDVVGMDQNQQYPVISLSAKN 361 Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHL-------YHLSQTVRYLEMASLNEKDC 400 +G+E + +K+ + + +RHL YHL LEM E Sbjct: 362 ADGIELVREHLKACIGFD-GATEGGFMARRRHLDALEHAAYHLDTGKAQLEMHIAGE--- 417 Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 I+AE LRL L +ITG + LL IFS FCIGK Sbjct: 418 ---ILAEELRLTQQYLNEITGEFTSDDLLGKIFSSFCIGK 454 >gi|254225543|ref|ZP_04919152.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae V51] gi|125621863|gb|EAZ50188.1| thiophene and furan oxidation protein ThdF [Vibrio cholerae V51] Length = 449 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 157/437 (35%), Positives = 242/437 (55%), Gaps = 21/437 (4%) Query: 22 IIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSA 81 IIR+SGP V + + + PR A F DG+ LD+G+ + FP+P SFTGED Sbjct: 16 IIRVSGPLAAHVAQTVTGRTL-RPRYAEYLPFTDEDGQQLDQGIALFFPNPHSFTGEDVL 74 Query: 82 EFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEM 141 E HGG V++ ++ + ++ +R A PGEFS RAF N K+DL +AE++ADLI + +E Sbjct: 75 ELQGHGGPVVMDMLIRRILQIKGVRPARPGEFSERAFLNDKMDLTQAEAIADLIDASSEQ 134 Query: 142 QRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKN 201 + +++ + GE S ++ L H+R ++EA +DF EEE + + +V D+ + + Sbjct: 135 AAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPEEE-IDFLADGKVSADLQTIID 193 Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261 ++++ + G I+R G K+VI G NAGKSSL NAL+ K+ AIVTDI GTTRDVL Sbjct: 194 NLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKESAIVTDIAGTTRDVLREH 253 Query: 262 LDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL-----KEINSKKEI-- 314 + ++G + I DTAG+R+ D VEK GI+R + E+ AD +L + E ++I Sbjct: 254 IHIDGMPLHIIDTAGLRDASDTVEKIGIERAWEEIRQADRVLFMVDGTTTEATDPQDIWP 313 Query: 315 ----SFPKNIDFIFIGTKSD-----LYSTYTEEYDHL-ISSFTGEGLEELINKIKSILSN 364 P+NI I K+D L + + + +S+ TG+G++ L +K + Sbjct: 314 DFVDKLPENIGITVIRNKADQTGEPLGICHVNQPTLIRLSAKTGQGVDALRQHLKECMGF 373 Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAENLRLASVSLGKITGCV 423 + + +RHL L + +L + E +I+AE LR+A L +ITG Sbjct: 374 SGNQ-EGGFMARRRHLDALERAAEHLAIGQQQLEGYMAGEILAEELRIAQQHLNEITGEF 432 Query: 424 DVEQLLDIIFSKFCIGK 440 + LL IFS FCIGK Sbjct: 433 SSDDLLGRIFSSFCIGK 449 >gi|261856983|ref|YP_003264266.1| tRNA modification GTPase TrmE [Halothiobacillus neapolitanus c2] gi|261837452|gb|ACX97219.1| tRNA modification GTPase TrmE [Halothiobacillus neapolitanus c2] Length = 448 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 167/453 (36%), Positives = 256/453 (56%), Gaps = 18/453 (3%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+ +TI A++T + IIRLSG + E I P + + G + Sbjct: 1 MHSPHDTIAAIATAPGRGGVGIIRLSGTQAHAIAERIVSTLPPIRYARHVPFKHPNTGAL 60 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D GL +VF +P S+TGED E HGG V++ +L+ L RLA PGEF+ RAF N Sbjct: 61 IDDGLCLVFSAPHSYTGEDVVELQGHGGPVVLDHLLK-LILQQGARLARPGEFTERAFLN 119 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G++DL +AE++ADLI + ++ + + + + G S + +L +R FIE+ LDF E Sbjct: 120 GRMDLAQAEAVADLIDAGSQAAAQAASQALQGVFSERVHRVTQQLIALRMFIESALDFPE 179 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + S ++ L ++I+ +S+ + G ++R G ++ I+G NAGKSSL N LA Sbjct: 180 EE-IDFLSDARLITQSQQLVDEIAELLSETQQGVLLREGMRVAIVGQPNAGKSSLLNQLA 238 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 D AIVTDIPGTTRDVL ++ ++G V I DTAG+RE+D+ +E+EGI+R + EVE AD Sbjct: 239 GDDRAIVTDIPGTTRDVLRAEIQIDGLPVHIIDTAGLRESDEPIEREGIRRAWREVEQAD 298 Query: 301 LILLLKEI-------NSKKEISFPKNIDFIFIGTKSDLY---STYTEEYDHL-ISSFTGE 349 +L L++ + K P+ I++ K DL + + +E HL IS+ TG Sbjct: 299 AVLFLQDDHRNNPDEDEKIRAMLPRK-HTIWVFNKIDLSGRPAGFDQEKIHLGISAKTGA 357 Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL--SQTVRYLEMASLNEKDCGLDIIAE 407 G++EL +K I+ + + I + +RHL L +Q ++L + G ++ AE Sbjct: 358 GIKELRAHLKEIMGYQSTEGGQFI-ARRRHLDALLGAQKEIISAHSALTTQSAG-ELAAE 415 Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +LR A ++L +ITG + LL IFS FCIGK Sbjct: 416 SLRRAQLALDEITGKFTADDLLGEIFSNFCIGK 448 >gi|164685874|ref|ZP_01947569.2| tRNA modification GTPase TrmE [Coxiella burnetii 'MSU Goat Q177'] gi|165922497|ref|ZP_02219668.1| tRNA modification GTPase TrmE [Coxiella burnetii RSA 334] gi|164601391|gb|EAX31811.2| tRNA modification GTPase TrmE [Coxiella burnetii 'MSU Goat Q177'] gi|165916702|gb|EDR35306.1| tRNA modification GTPase TrmE [Coxiella burnetii RSA 334] Length = 452 Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 175/463 (37%), Positives = 258/463 (55%), Gaps = 45/463 (9%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFI--CKKKKPFPRKASLRYFFGLDGRILDK 63 ETI A +T + I ++R+SG + + I C P PR A+ F G ++D+ Sbjct: 7 ETIAAQATPSGRGGIGVVRVSGEKTKAIAQKILGCV---PKPRYATFVKFRD-SGSVIDE 62 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 G+ + FP P SFTGED E H HGG V++ +L + K R A PGEFS RAF N KI Sbjct: 63 GIALYFPKPNSFTGEDVLELHGHGGPVVMDRLLNTVLKA-GARQARPGEFSERAFLNNKI 121 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL +AE++ADLI++ +E R +M + GE S Q +D L +R +IEA +DF EEE Sbjct: 122 DLAQAEAVADLINASSEQAARSAMRSLQGEFSKRIHQLVDALIQLRMYIEASIDFPEEEI 181 Query: 184 --VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 + + KE L ++ +I QG L +R G +VI G N GKSSL N L+ Sbjct: 182 DFLADERIKETLENLTHQVQEIEKTAKQGAL---LREGITVVIAGEPNVGKSSLLNLLSG 238 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 ++ AIVTDI GTTRD++ + ++G + + DTAG+R T+D+VEKEG++RT V+ ADL Sbjct: 239 QETAIVTDIAGTTRDIIRESIHIDGLPIHVVDTAGLRLTEDVVEKEGVRRTQKAVQQADL 298 Query: 302 ILLLKEINS-----KKEIS--FPKN---IDFIFIGTKSDLYSTY----TEEYDHL-ISSF 346 +LL+ + + KK I+ F +N I + I K DL +EY H+ +S Sbjct: 299 LLLMIDASKPTEDFKKIIAQWFSENDNKIPTLIIENKIDLIGEAPRKENKEYPHIKLSVK 358 Query: 347 TGEGLEELINKIKSILS------NKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS---LNE 397 T G+E L N +K+ N F + +RH +++ +L+ A+ LN+ Sbjct: 359 TRAGVELLKNHLKNTAGFEATHENNF-------IARRRHCDAIARASAFLKNANNHLLNQ 411 Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 K +++AE+L+LA +L +ITG + LL IFS+FCIGK Sbjct: 412 KAG--ELVAEDLKLAQNALSEITGEFTSDDLLGKIFSEFCIGK 452 >gi|330447275|ref|ZP_08310925.1| tRNA modification GTPase TrmE [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491466|dbj|GAA05422.1| tRNA modification GTPase TrmE [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 455 Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 169/461 (36%), Positives = 247/461 (53%), Gaps = 27/461 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 MN +TI A +T + IIR+SGP +V + ++ R A F DG Sbjct: 1 MNQHIDTIVAQATPPGRGGVGIIRVSGPKAKEVALAVAGRELK-TRYAEYLPFKNEDGIA 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + F P SFTGED E HGG +++ ++ + K+ +R A PGEFS RAF N Sbjct: 60 LDQGIALFFKGPNSFTGEDVLELQGHGGPVLMDMMIRRILKIDGIRAARPGEFSERAFMN 119 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + +E + + + + G S+ ++ L H+R ++EA +DF E Sbjct: 120 DKLDLAQAEAIADLIDASSEEAAKSAFKSLQGAFSTKVNDLVEALIHLRIYVEAAIDFPE 179 Query: 181 EEDVQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 EE + S +V LN I+ ND+ +QG I+R G K+VI G NAGKSSL N Sbjct: 180 EE-IDFLSDGKVSGDLNGIIERLNDVRKEANQGA---IMREGMKVVIAGRPNAGKSSLLN 235 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 AL+ KD AIVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+E Sbjct: 236 ALSGKDSAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWDEIE 295 Query: 298 NADLILLL-----KEINSKKEI------SFPKNIDFIFIGTKSDLYSTYT----EEYDHL 342 +AD +L + + KEI P ++ I K++L T L Sbjct: 296 HADRVLFMVDSTTTDATDPKEIWPDFIERLPADMGLTVIRNKAELTGEQTGICHANNPTL 355 Query: 343 I--SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKD 399 I S+ TG+G++ L +K + + +RHL L + +L++ E Sbjct: 356 IRLSARTGDGVDALREHLKQCMGFS-GTTEGGFMARRRHLDALERAAEHLDIGKEQLEGF 414 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +I+AE LRLA L +ITG + LL IF+ FCIGK Sbjct: 415 MAGEILAEELRLAQQHLSEITGEFTSDDLLGRIFTSFCIGK 455 >gi|92115430|ref|YP_575358.1| tRNA modification GTPase TrmE [Chromohalobacter salexigens DSM 3043] gi|122419006|sp|Q1QS99|MNME_CHRSD RecName: Full=tRNA modification GTPase mnmE gi|91798520|gb|ABE60659.1| tRNA modification GTPase trmE [Chromohalobacter salexigens DSM 3043] Length = 458 Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 163/459 (35%), Positives = 247/459 (53%), Gaps = 28/459 (6%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62 + ++TI A++T + IIRLSGP+ + E I P PR A F+ D ++LD Sbjct: 7 YRQDTIAAIATPPGRGGVGIIRLSGPASRDLAERILGHC-PAPRHAHYGPFYDADAQVLD 65 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 +G+ + FP P SFTGED E HGG +++ +L + RLA PGEFS RAF N K Sbjct: 66 EGIALFFPGPHSFTGEDVLELQGHGGPVIMDLLLARCVAL-GARLARPGEFSERAFLNDK 124 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 +DL +AE++ADLI + + ++ + GE S+ +DKL +R F+EA +DF EEE Sbjct: 125 LDLAQAEAIADLIDASSRAAAENALRSLQGEFSTRVSALVDKLIELRMFVEAAIDFPEEE 184 Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 + + +V + + + + G ++R G +VI G NAGKSSL NAL ++ Sbjct: 185 -IDFLADGKVAAMLQGAQETLGEVRAAAGQGALMREGMNVVIAGRPNAGKSSLLNALTER 243 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 D AIVTDI GTTRDVL + ++G + + DTAG+R+T D +EK G+ R + E+E AD + Sbjct: 244 DSAIVTDIEGTTRDVLREYIHIDGMPLHVIDTAGLRDTPDAIEKIGVARAWEEIEKADRV 303 Query: 303 LLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTYTEEYDH-------LIS 344 LLL + + + P + K D S TE+ D +S Sbjct: 304 LLLVDATTTTQTDPMQLWPEFVARLPHPERLTLVRNKID-ESGETEQSDLSTSPPIVRLS 362 Query: 345 SFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCG 401 + TG G++ L +K+++ + + FS + +RHL L + L+ +A L G Sbjct: 363 AKTGLGVDNLKEHLKAVMGFDATTEGRFS--ARRRHLDALDRAGDALDNGIAQLRGHGAG 420 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE+LR A +L +ITG + LL IF FCIGK Sbjct: 421 -ELLAEDLRDAQQALSEITGEFTADDLLGEIFGSFCIGK 458 >gi|299068431|emb|CBJ39655.1| GTPase involved in tRNA modification and in thiophene and furan oxidation [Ralstonia solanacearum CMR15] Length = 481 Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 154/459 (33%), Positives = 245/459 (53%), Gaps = 29/459 (6%) Query: 8 IFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLI 67 I A++T I ++R+SGP V + +C + PR+A+ F DG +D+G+ + Sbjct: 26 IAAIATAPGRGGIGVVRVSGPDVRAVMQAVCGRLLQ-PRQATYLPFLDADGAAIDRGIAL 84 Query: 68 VFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN---LRLANPGEFSRRAFENGKID 124 FP+P S+TGED E HGG V+ +L + + LR+A PGEF+RRAF N K+D Sbjct: 85 WFPAPHSYTGEDVFELQGHGGPVVMQLLLSRCLRAGHGIGLRVAEPGEFTRRAFLNDKLD 144 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ADLI + TE R + + G S ++++ H+R +EA LDF EEE + Sbjct: 145 LAQAEAVADLIEASTEAAARSAARSLDGVFSQTVHALVERVIHLRVLVEATLDFPEEE-I 203 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + + + ++ + ++Q + G ++R G +V+ G N GKSSL NALA ++ Sbjct: 204 DFLEAADARGQLADIRARLDGVLAQARQGALLREGLHVVLAGQPNVGKSSLLNALAGAEL 263 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIVT I GTTRD + + +EG + I DTAG+R+T+D VE+ GI+RT+ + AD++L Sbjct: 264 AIVTPIAGTTRDKVQQTIQIEGIPLNIVDTAGLRDTEDEVERIGIERTWAAIARADVVLH 323 Query: 305 L---------------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY------DHLI 343 L I+++ P + + + K DL T + + + Sbjct: 324 LLDAADYRAHGLSAEDATIDARIAEHVPSGVPTLRVINKIDLAGTAAPDRVDAQPPEVWL 383 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LNEKDCG 401 S+ G G+E L + I + + + +RHL L +L +A+ +++ Sbjct: 384 SARDGSGIELLRAALLEIAGWQGGGEGLYL-ARERHLSALRTAREHLAIAADHADQRAQS 442 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LD+ AE LRLA +L ITG + LL +IFS+FCIGK Sbjct: 443 LDLFAEELRLAQEALNSITGAFSSDDLLGVIFSRFCIGK 481 >gi|190171168|gb|ACE63654.1| ThdF [Citrobacter freundii] Length = 439 Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 154/435 (35%), Positives = 242/435 (55%), Gaps = 23/435 (5%) Query: 18 SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77 + I+R+SG +V E + K P PR A F DG LD+G+ + FP P SFTG Sbjct: 9 GGVGILRISGLKAREVAETVLGKL-PKPRYADYLPFKDADGSTLDQGIALWFPGPNSFTG 67 Query: 78 EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137 ED E HGG +++ +L+ + +P LR+A PGEFS RAF N K+DL +AE++ADLI + Sbjct: 68 EDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKLDLAQAEAIADLIDA 127 Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197 +E R ++ + G S+ ++ LTH+R ++EA +DF +EE + S ++ + Sbjct: 128 SSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE-IDFLSDGKIEAQLN 186 Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257 + +D+ + ++ + G ++R G K+VI G NAGKSSL NALA ++ AIVTDI GTTRDV Sbjct: 187 NVISDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDV 246 Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS-- 315 L + ++G + I DTAG+R+ D VE+ GI+R + E+E AD +L + + + + Sbjct: 247 LREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPA 306 Query: 316 ---------FPKNIDFIFIGTKSDLYST---YTEEYDH---LISSFTGEGLEELINKIKS 360 P + + K+D+ +E H +S+ TGEG++ L N +K Sbjct: 307 DIWPDFIARLPAKLPITVVRNKADITGETLGLSEVNGHSLVRLSARTGEGVDVLRNHLKQ 366 Query: 361 ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSLGK 418 + + + + +RHL L++ +LE A L G +++AE LRLA +L + Sbjct: 367 SMGFE-TNMEGGFLARRRHLQALAEAAEHLEQGKAQLLGAWAG-ELLAEELRLAQQNLSE 424 Query: 419 ITGCVDVEQLLDIIF 433 ITG + LL IF Sbjct: 425 ITGEFTSDDLLGRIF 439 >gi|168187283|ref|ZP_02621918.1| tRNA modification GTPase TrmE [Clostridium botulinum C str. Eklund] gi|169294804|gb|EDS76937.1| tRNA modification GTPase TrmE [Clostridium botulinum C str. Eklund] Length = 459 Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 179/462 (38%), Positives = 265/462 (57%), Gaps = 28/462 (6%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGLDG 58 E +TI A++T S +SIIR+SG + I K R S+RY F +D Sbjct: 2 KEFDTIAAIATNLGESGVSIIRVSGDKALSIVSSIFSGKNDRKLDDIRTYSMRYGFIIDK 61 Query: 59 RI---LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 LD+ ++ P SFT ED E + HGG+ V ILEE+ K RLA+PGEF++ Sbjct: 62 DTKEKLDEVIVSYMKGPRSFTAEDVVEINCHGGVVVTKRILEEVVK-AGARLASPGEFTK 120 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG+IDL +AE++ DLIS++TE+ + ++E G+LS G+ +KL I + IEA Sbjct: 121 RAFLNGRIDLSQAEAVIDLISAKTELSAKSALEQSEGKLSREIGKIRNKLLEIIASIEAT 180 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +D+ E+ D++ +S++ + L ++I S ++ G+I+R G VI+G N GKSSL Sbjct: 181 VDYPED-DLEEVTSEKGRESVSKLVDEIDSLLAHADEGKILREGLNTVIVGKPNVGKSSL 239 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 NAL + AIVTD+PGTTRDV+ + +EG +KI DTAGIR+TDD+VEK G++++ + Sbjct: 240 LNALLMETRAIVTDVPGTTRDVIEEYMSIEGIPIKIVDTAGIRDTDDVVEKIGVEKSREK 299 Query: 296 VENADLILLLKE-----INSKKE-ISFPKNIDFIFIGTKSDLYSTYTEE--------YDH 341 + ++DL +L+ + N KE I+F K+ +I + K DL S +E Y Sbjct: 300 INSSDLTVLVLDNSRSLDNEDKEIINFIKDKKYIVLLNKVDLESKIDKEALKELNSKYII 359 Query: 342 LISSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN--EK 398 IS+ TG GL++ IK + S K I ++ RH L + LE AS N E Sbjct: 360 EISAKTGSGLDKFKEVIKELFFSGKVTSKDVMI-TNTRHKEALIRAKDSLE-ASKNALED 417 Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D+ + +LR A SLG+I G E ++D IFSKFC+GK Sbjct: 418 TFAIDLASIDLRNAWKSLGEINGDTVEEDIIDKIFSKFCLGK 459 >gi|212217715|ref|YP_002304502.1| tRNA modification GTPase TrmE [Coxiella burnetii CbuK_Q154] gi|212011977|gb|ACJ19357.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase [Coxiella burnetii CbuK_Q154] Length = 473 Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 175/463 (37%), Positives = 258/463 (55%), Gaps = 45/463 (9%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFI--CKKKKPFPRKASLRYFFGLDGRILDK 63 ETI A +T + I ++R+SG + + I C P PR A+ F G ++D+ Sbjct: 28 ETIAAQATPSGRGGIGVVRVSGEKTKAIAQKILGCV---PKPRYATFVKFRD-SGSVIDE 83 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 G+ + FP P SFTGED E H HGG V++ +L + K R A PGEFS RAF N KI Sbjct: 84 GIALYFPKPNSFTGEDVLELHGHGGPVVMDRLLNTVLKA-GARQARPGEFSERAFLNNKI 142 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL +AE++ADLI++ +E R +M + GE S Q +D L +R +IEA +DF EEE Sbjct: 143 DLAQAEAVADLINASSEQAARSAMRSLQGEFSKRIHQLVDALIQLRMYIEASIDFPEEEI 202 Query: 184 --VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 + + KE L ++ +I QG L +R G +VI G N GKSSL N L+ Sbjct: 203 DFLADERIKETLENLTHQVQEIEKTAKQGAL---LREGITVVIAGEPNVGKSSLLNLLSG 259 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 ++ AIVTDI GTTRD++ + ++G + + DTAG+R T+D+VEKEG++RT V+ ADL Sbjct: 260 QETAIVTDIAGTTRDIIRESIHIDGLPIHVVDTAGLRLTEDVVEKEGVRRTQKAVQQADL 319 Query: 302 ILLLKEINS-----KKEIS--FPKN---IDFIFIGTKSDLYSTY----TEEYDHL-ISSF 346 +LL+ + + KK I+ F +N I + I K DL +EY H+ +S Sbjct: 320 LLLMIDASKPTEDFKKIIAQWFSENDNKIPTLIIENKIDLIGEAPRKENKEYPHIKLSVK 379 Query: 347 TGEGLEELINKIKSILS------NKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS---LNE 397 T G+E L N +K+ N F + +RH +++ +L+ A+ LN+ Sbjct: 380 TRAGVELLKNHLKNTAGFEATHENNFI-------ARRRHCDAIARASAFLKNANNHLLNQ 432 Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 K +++AE+L+LA +L +ITG + LL IFS+FCIGK Sbjct: 433 K--AGELVAEDLKLAQNALSEITGEFTSDDLLGKIFSEFCIGK 473 >gi|84394513|ref|ZP_00993223.1| tRNA modification GTPase [Vibrio splendidus 12B01] gi|84374866|gb|EAP91803.1| tRNA modification GTPase [Vibrio splendidus 12B01] Length = 453 Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 167/457 (36%), Positives = 248/457 (54%), Gaps = 29/457 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVC-EFICKKKKPFPRKASLRYFFGLDGRILDKG 64 +TI A +T + IIR+SGP QV E K KP R A F DG LD+G Sbjct: 4 DTIVAQATAPGRGGVGIIRVSGPLATQVALEVTGKTLKP--RYAEYLPFKSDDGIELDQG 61 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 + + FP+P SFTGED E HGG V++ +++ + + +R A PGEFS RAF N K+D Sbjct: 62 IALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILAISGVRAARPGEFSERAFLNDKMD 121 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ADLI + +E + +++ + GE S +D L ++R ++EA +DF EEE + Sbjct: 122 LTQAEAIADLIDASSEEAAKSALQSLQGEFSKRINTLVDSLIYLRIYVEAAIDFPEEE-I 180 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + +V D+ + +++ + + G I+R G K+VI G NAGKSSL NAL+ K+ Sbjct: 181 DFLADGKVSTDLQAIIDNLEAVRQEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKES 240 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIVTDI GTTRDVL + ++G + I DTAG+R+ D VEK GI+R + E+ AD +L Sbjct: 241 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVEKIGIERAWEEIAQADRVLF 300 Query: 305 L-----KEINSKKEI------SFPKNIDFIFIGTKSDLYSTYTEEYD--HL-------IS 344 + + K+I P NI I K+D S EE H+ +S Sbjct: 301 MVDGTTTDATDPKDIWPDFVDRLPDNIGMTVIRNKADQTS---EELGICHVNDPTLIRLS 357 Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLD 403 + TG+G++ L + +K + + +RHL L + +L++ E + Sbjct: 358 AKTGQGVDALRSHLKDCMGFAGGH-EGGFMARRRHLDALERASEHLDIGQQQLEGYMAGE 416 Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 I+AE LR+ L +ITG + LL IFS FCIGK Sbjct: 417 ILAEELRITQQHLNEITGEFSSDDLLGRIFSSFCIGK 453 >gi|157964906|ref|YP_001499730.1| tRNA modification GTPase TrmE [Rickettsia massiliae MTU5] gi|166991114|sp|A8F2P7|MNME_RICM5 RecName: Full=tRNA modification GTPase mnmE gi|157844682|gb|ABV85183.1| tRNA modification GTPase TrmE [Rickettsia massiliae MTU5] Length = 445 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 159/456 (34%), Positives = 252/456 (55%), Gaps = 33/456 (7%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD----GRIL 61 ETIFA S+ + +++ R+SGP +V + + +K K+ L Y+ + ++ Sbjct: 2 ETIFAQSSAFGKAGVAVFRISGPKSLEVLQLLTGRKD---FKSRLMYYQQITVPETKELI 58 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121 D +++ F SP SFTGED E H HG A+ + L + +RLA GEF++RAF N Sbjct: 59 DNVMVVYFKSPGSFTGEDVVEIHTHGSKAISIILTNALLNIAGIRLAEAGEFTKRAFLNN 118 Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181 K DL AE +ADLI++ET MQ + ++ +G+L LY W +L I S +EA +DF + Sbjct: 119 KFDLTAAEGIADLINAETIMQHKQAIRQANGKLEELYNNWRSQLLKIISLLEAYIDFP-D 177 Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 ED+ + EV N L N IS +++ + GE++R+G K+ I+G N GKSSL N L + Sbjct: 178 EDIPDTVLNEVTNTHTILVNTISEYLNDNRKGELLRSGLKLAIIGPPNVGKSSLLNFLMQ 237 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RETDDIVEKEGIKRTFLEVENAD 300 +D+AIV++I GTTRD++ LD+ GY + + DTAGI E+ DI+E+EGIKR + AD Sbjct: 238 RDIAIVSNIAGTTRDIIEGHLDIGGYPIILQDTAGIGEESSDIIEQEGIKRAINSAKTAD 297 Query: 301 LILLL-------KEIN-------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF 346 + +++ IN + I+ ID I S ++S + +S Sbjct: 298 IKIIMFDAEKLDSSINEDIINLIDENTITIINKIDLI---EASKIFSIENKYKCLRVSVK 354 Query: 347 TGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI 404 L ++ I++I N F + P+ +++RH +L Q + +L SL D L + Sbjct: 355 NNIALSSILKNIENIAENMAGFTETPY--ITNQRHRNYLQQALSHLTAFSL---DNDLVL 409 Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E++R+ + +G I G ++VE++L IF FCIGK Sbjct: 410 ATEDIRMTARCIGAIMGVINVEEILGEIFKNFCIGK 445 >gi|209693636|ref|YP_002261564.1| tRNA modification GTPase TrmE [Aliivibrio salmonicida LFI1238] gi|208007587|emb|CAQ77687.1| probable tRNA modification GTPase [Aliivibrio salmonicida LFI1238] Length = 455 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 163/459 (35%), Positives = 249/459 (54%), Gaps = 23/459 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVC-EFICKKKKPFPRKASLRYFFGLDGR 59 M +TI A +T + IIR+SGP QV E + K KP R A F +G Sbjct: 1 MTLHTDTIVAQATAPGRGGVGIIRVSGPKAQQVALEVVGKTLKP--RYAEYTPFKDDNGL 58 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 LD+G+ + FP+P SFTGED E HGG V++ +++ + K+ +R A PGEFS RAF Sbjct: 59 ELDQGIALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILKIEGIRTARPGEFSERAFL 118 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 N K+DL +AE++ADLI + +E + ++ + G S ++ L ++R ++EA +DF Sbjct: 119 NDKMDLAQAEAIADLIDASSEEAAKSALNSLQGVFSRKINTLVESLIYLRIYVEAAIDFP 178 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 EEE + + +V D+ + +++++ + G I+R G K+VI G NAGKSSL NAL Sbjct: 179 EEE-IDFLADGKVSGDLQGIIDNLNAVRQEANQGAIMREGMKVVIAGRPNAGKSSLLNAL 237 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 + KD AIVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+ A Sbjct: 238 SGKDSAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIAQA 297 Query: 300 DLILLLKEINSKKEIS-----------FPKNIDFIFIGTKSD-----LYSTYTEEYDHL- 342 D +L + + + PKN+ I K+D L + + + Sbjct: 298 DRVLFMVDGTTTDATDPKVIWPEFLDRLPKNMGMTVIRNKADQTGENLGICHVNDPTLIR 357 Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCG 401 +S+ TGEG++ L +K + + + +RHL L + +L++ E Sbjct: 358 LSAKTGEGVDALRLHLKECMGFSGNQ-EGGFMARRRHLEALEKASEHLDIGQQQLEGYMA 416 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +I+AE LR+A L +ITG + LL IF+ FCIGK Sbjct: 417 GEILAEELRIAQQHLSEITGEFSSDDLLGRIFTSFCIGK 455 >gi|161830089|ref|YP_001597738.1| tRNA modification GTPase TrmE [Coxiella burnetii RSA 331] gi|14195264|sp|P94612|MNME_COXBU RecName: Full=tRNA modification GTPase mnmE gi|189036199|sp|A9KBS9|MNME_COXBN RecName: Full=tRNA modification GTPase mnmE gi|189036200|sp|A9NBA7|MNME_COXBR RecName: Full=tRNA modification GTPase mnmE gi|1780759|emb|CAA71458.1| unnamed protein product [Coxiella burnetii] gi|161761956|gb|ABX77598.1| tRNA modification GTPase TrmE [Coxiella burnetii RSA 331] Length = 452 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 174/463 (37%), Positives = 258/463 (55%), Gaps = 45/463 (9%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFI--CKKKKPFPRKASLRYFFGLDGRILDK 63 ETI A +T + I ++R+SG + + I C P PR A+ F G ++D+ Sbjct: 7 ETIAAQATPSGRGGIGVVRVSGEKTKAIAQKILGCV---PKPRYATFVKFRD-SGSVIDE 62 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 G+ + FP P SFTGED E H HGG V++ +L + K R A PGEFS RAF N KI Sbjct: 63 GIALYFPKPNSFTGEDVLELHGHGGPVVMDRLLNTVLKA-GARQARPGEFSERAFLNNKI 121 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL +AE++ADLI++ +E R +M + GE S Q +D L +R +IEA +DF EEE Sbjct: 122 DLAQAEAVADLINASSEQAARSAMRSLQGEFSKRIHQLVDALIQLRMYIEASIDFPEEEI 181 Query: 184 --VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 + + KE L ++ +I QG L +R G +VI G N GKSSL N L+ Sbjct: 182 DFLADERIKETLENLTHQVQEIEKTAKQGAL---LREGITVVIAGEPNVGKSSLLNLLSG 238 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 ++ AIVTDI GTTRD++ + ++G + + DTAG+R T+D+VEKEG++RT V+ ADL Sbjct: 239 QETAIVTDIAGTTRDIIRESIHIDGLPIHVVDTAGLRLTEDVVEKEGVRRTQKAVQQADL 298 Query: 302 ILLLKEINS-----KKEIS--FPKN---IDFIFIGTKSDLYSTY----TEEYDHL-ISSF 346 +LL+ + + KK I+ F +N I + + K DL +EY H+ +S Sbjct: 299 LLLMIDASKPTEDFKKIIAQWFSENDNKIPTLIVENKIDLIGEAPRKENKEYPHIKLSVK 358 Query: 347 TGEGLEELINKIKSILS------NKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS---LNE 397 T G+E L N +K+ N F + +RH +++ +L+ A+ LN+ Sbjct: 359 TRAGVELLKNHLKNTAGFEATHENNF-------IARRRHCDAIARASAFLKNANNHLLNQ 411 Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 K +++AE+L+LA +L +ITG + LL IFS+FCIGK Sbjct: 412 KAG--ELVAEDLKLAQNALSEITGEFTSDDLLGKIFSEFCIGK 452 >gi|170718319|ref|YP_001785331.1| tRNA modification GTPase TrmE [Haemophilus somnus 2336] gi|205829154|sp|B0URU2|MNME_HAES2 RecName: Full=tRNA modification GTPase mnmE gi|168826448|gb|ACA31819.1| tRNA modification GTPase TrmE [Haemophilus somnus 2336] Length = 452 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 161/454 (35%), Positives = 256/454 (56%), Gaps = 22/454 (4%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64 ++TI A +T + I+R+SGP QV E + K PR A+ F DG +LD+G Sbjct: 3 RDTIVAQATPIGRGGVGILRVSGPLAQQVAEQVLGKTLT-PRMANYLPFKDSDGSVLDQG 61 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 + + F +P SFTGE+ E HGG V++ +L+ + ++ +RLA PGEFS +AF N K+D Sbjct: 62 IALYFKAPNSFTGENVLELQGHGGQIVMDLLLKRILQIDGIRLARPGEFSEQAFLNDKLD 121 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ADLI + +E R +++ + GE S+ + +D + ++R+++EA +DF +EE + Sbjct: 122 LAQAEAIADLIEASSEQAARSALKSLQGEFSNKINELVDSVIYLRTYVEAAIDFPDEE-I 180 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + ++ + + ++ ++ K G I+R G K+VI G NAGKSSL N LA ++ Sbjct: 181 DFLADGKIETHLREIIAKLAKVKNEAKQGAILREGMKVVIAGRPNAGKSSLLNTLAGREA 240 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIVTDI GTTRDVL + ++G + I DTAG+R+ D VEK GI+R + E+E AD ILL Sbjct: 241 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDATDEVEKIGIRRAWDEIEQADRILL 300 Query: 305 LKE----------INSKKEISFPKNIDFIFIGTKSDLY--STYTEEYDHL----ISSFTG 348 + + + S+ P +I + K+DL + E + L +S+ T Sbjct: 301 ILDSTENQVELDLVRSEFMAKLPPHIPLTIVRNKADLSGEAEVLNEQNGLTVISLSAKTQ 360 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDIIA 406 +G++ L +K + + + +RHL L Q +L+ + L E G +++A Sbjct: 361 KGVDLLRQHLKQSMGYQVCT-EGGFLARRRHLEALEQADIHLQAGLIQLTEFYAG-ELVA 418 Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E LR+ L +ITG + LL IFS FCIGK Sbjct: 419 EELRIVQHHLSEITGQFTSDDLLGNIFSSFCIGK 452 >gi|260771040|ref|ZP_05879968.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio furnissii CIP 102972] gi|260613929|gb|EEX39120.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio furnissii CIP 102972] gi|315178633|gb|ADT85547.1| tRNA modification GTPase trmE [Vibrio furnissii NCTC 11218] Length = 453 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 161/454 (35%), Positives = 248/454 (54%), Gaps = 23/454 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + IIR+SGP +V + + PR A F G LD+G+ Sbjct: 4 DTIVAQATAPGRGGVGIIRVSGPKATEVALAVTGRTLK-PRYAEYLPFKTESGVELDQGI 62 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + FP+P SFTGED E HGG V++ +++ + +P +R A PGEFS RAF N K+DL Sbjct: 63 ALFFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILMIPGVRPARPGEFSERAFLNDKMDL 122 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E + +++ + G+ S ++ L H+R ++EA +DF EEE + Sbjct: 123 TQAEAIADLIDASSEEAAKSALKSLQGQFSKRIHTLVESLIHLRIYVEAAIDFPEEE-ID 181 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 + +V D+ + +++++ + G I+R G K+VI G NAGKSSL NAL+ K+ A Sbjct: 182 FLADGKVSGDLQAIIDNLNAVRQEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKESA 241 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTDI GTTRDVL + ++G + I DTAG+RE D VEK GI+R + E+ AD +L + Sbjct: 242 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVEKIGIERAWDEIAQADRVLFM 301 Query: 306 KEINSKKEISFPKNI--DFIFIGTKSDLYSTYTEEYDHL----------------ISSFT 347 + + + PK+I DF+ S + + D +S+ T Sbjct: 302 VD-GTTTSATDPKDIWPDFVDRLPDSMGMTVIRNKVDQTGETLGICHVNQPTLIRLSAKT 360 Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIA 406 GEG++ L + +K+ + + + +RHL L + +L + E +I+A Sbjct: 361 GEGVDALRSHLKACMGFTGNQ-EGGFMARRRHLDALERAAEHLSIGQQQLEGYMAGEILA 419 Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E LRLA L +ITG + LL IFS FCIGK Sbjct: 420 EELRLAQQHLNEITGEFSSDDLLGRIFSSFCIGK 453 >gi|29655207|ref|NP_820899.1| tRNA modification GTPase TrmE [Coxiella burnetii RSA 493] gi|209363710|ref|YP_001423624.2| tRNA modification GTPase TrmE [Coxiella burnetii Dugway 5J108-111] gi|29542479|gb|AAO91413.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase [Coxiella burnetii RSA 493] gi|207081643|gb|ABS78334.2| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase [Coxiella burnetii Dugway 5J108-111] Length = 473 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 174/463 (37%), Positives = 258/463 (55%), Gaps = 45/463 (9%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFI--CKKKKPFPRKASLRYFFGLDGRILDK 63 ETI A +T + I ++R+SG + + I C P PR A+ F G ++D+ Sbjct: 28 ETIAAQATPSGRGGIGVVRVSGEKTKAIAQKILGCV---PKPRYATFVKFRD-SGSVIDE 83 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 G+ + FP P SFTGED E H HGG V++ +L + K R A PGEFS RAF N KI Sbjct: 84 GIALYFPKPNSFTGEDVLELHGHGGPVVMDRLLNTVLKA-GARQARPGEFSERAFLNNKI 142 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL +AE++ADLI++ +E R +M + GE S Q +D L +R +IEA +DF EEE Sbjct: 143 DLAQAEAVADLINASSEQAARSAMRSLQGEFSKRIHQLVDALIQLRMYIEASIDFPEEEI 202 Query: 184 --VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 + + KE L ++ +I QG L +R G +VI G N GKSSL N L+ Sbjct: 203 DFLADERIKETLENLTHQVQEIEKTAKQGAL---LREGITVVIAGEPNVGKSSLLNLLSG 259 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 ++ AIVTDI GTTRD++ + ++G + + DTAG+R T+D+VEKEG++RT V+ ADL Sbjct: 260 QETAIVTDIAGTTRDIIRESIHIDGLPIHVVDTAGLRLTEDVVEKEGVRRTQKAVQQADL 319 Query: 302 ILLLKEINS-----KKEIS--FPKN---IDFIFIGTKSDLYSTY----TEEYDHL-ISSF 346 +LL+ + + KK I+ F +N I + + K DL +EY H+ +S Sbjct: 320 LLLMIDASKPTEDFKKIIAQWFSENDNKIPTLIVENKIDLIGEAPRKENKEYPHIKLSVK 379 Query: 347 TGEGLEELINKIKSILS------NKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS---LNE 397 T G+E L N +K+ N F + +RH +++ +L+ A+ LN+ Sbjct: 380 TRAGVELLKNHLKNTAGFEATHENNFI-------ARRRHCDAIARASAFLKNANNHLLNQ 432 Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 K +++AE+L+LA +L +ITG + LL IFS+FCIGK Sbjct: 433 K--AGELVAEDLKLAQNALSEITGEFTSDDLLGKIFSEFCIGK 473 >gi|26986750|ref|NP_742175.1| tRNA modification GTPase TrmE [Pseudomonas putida KT2440] gi|148550508|ref|YP_001270610.1| tRNA modification GTPase TrmE [Pseudomonas putida F1] gi|60415983|sp|P0A175|MNME_PSEPK RecName: Full=tRNA modification GTPase mnmE gi|60415984|sp|P0A176|MNME_PSEPU RecName: Full=tRNA modification GTPase mnmE gi|166234811|sp|A5WBB6|MNME_PSEP1 RecName: Full=tRNA modification GTPase mnmE gi|24981340|gb|AAN65639.1|AE016190_5 tRNA modification GTPase [Pseudomonas putida KT2440] gi|45710|emb|CAA44418.1| unnamed protein product [Pseudomonas putida] gi|148514566|gb|ABQ81426.1| tRNA modification GTPase trmE [Pseudomonas putida F1] gi|313496414|gb|ADR57780.1| MnmE [Pseudomonas putida BIRD-1] Length = 456 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 164/462 (35%), Positives = 251/462 (54%), Gaps = 28/462 (6%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 MN +ETI A++T + I+RLSGP + I + PR A F +G + Sbjct: 1 MNTVRETIAAIATAQGRGGVGIVRLSGPLAAKAGLLITGRTLT-PRHAHYGPFRDDEGLV 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG V++ +L+ ++ RLA PGEFS RAF N Sbjct: 60 LDEGIALFFPGPNSFTGEDVLELQGHGGPVVLDMLLQRCVQV-GCRLARPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + + R ++ + GE S + L +R ++EA +DF E Sbjct: 119 DKLDLAQAEAIADLIEASSSQAARNALRSLQGEFSRRVHSLTEALIALRIYVEAAIDFPE 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + + VL+ + +++++S+ + G ++R+G +VI G NAGKSSL N LA Sbjct: 179 EE-IDFLADGHVLSMLDAVRSELSTVQREAGQGALLRDGMTVVIAGRPNAGKSSLLNQLA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRD+L + ++G + + DTAG+R+TDD VEK G++R + AD Sbjct: 238 GREAAIVTDIAGTTRDILREHIHIDGMPLHVVDTAGLRDTDDHVEKIGVERALKAIGEAD 297 Query: 301 LILLLKEINSKKE-----------ISFPKNIDFIFIGTKSDLYSTYT--EEYD--HLISS 345 +LL+ + + + P I K+DL E+ D H+ + Sbjct: 298 RVLLVVDSTAPEASDPFALWPEFLAQRPDPAKVTLIRNKADLSGERVALEQCDDGHVTIT 357 Query: 346 FTGE----GLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEK 398 + + GL+ L + +K + + + FS + +RHL L Q +LE A L Sbjct: 358 LSAKGDDTGLQLLRDHLKGCMGYEQTAESGFS--ARRRHLDALRQASEHLEHGRAQLTLA 415 Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G +++AE+LR A +LG+ITG + LL IFS FCIGK Sbjct: 416 GAG-ELLAEDLRQAQHALGEITGAFSSDDLLGRIFSSFCIGK 456 >gi|304413431|ref|ZP_07394904.1| putative GTPase [Candidatus Regiella insecticola LSR1] gi|304284274|gb|EFL92667.1| putative GTPase [Candidatus Regiella insecticola LSR1] Length = 457 Score = 250 bits (638), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 170/459 (37%), Positives = 253/459 (55%), Gaps = 25/459 (5%) Query: 2 NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR-I 60 N E +TI A +T + I+R+SG V + I K P PR A F+ D I Sbjct: 4 NKENDTIVAQATPPGRGGVGILRISGALASAVAQAILNKLPP-PRYAHYLKFYDEDSNSI 62 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP--NLRLANPGEFSRRAF 118 LD+G+ + F P SFTGED E HGG V++ +L+ + +P LR+A PGEF RAF Sbjct: 63 LDQGIALYFQGPHSFTGEDILELQGHGGPIVLDLLLKRILALPLPGLRIARPGEFLERAF 122 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 N KIDL +AE++ADLI++ +E R ++ + G S + L +R+++EA +DF Sbjct: 123 LNNKIDLTQAEAVADLINANSEQAARSAVNSLQGVFSDRIKAFSQNLIDLRAYVEAAMDF 182 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 SEEE + S ++ + + N++ + G ++R G K+VI G NAGKSSL NA Sbjct: 183 SEEE-INFLSDGKIEGQLNNIINELKKVQAAAHQGSLLREGMKVVIAGRPNAGKSSLLNA 241 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 LA K+ AIVT + GTTRDVL + ++G + I DTAG+RET +I+EK GI+R + E+EN Sbjct: 242 LAGKESAIVTAVAGTTRDVLREYIHIDGMPLHIIDTAGLRETSEIIEKIGIERAWHEIEN 301 Query: 299 ADLILLLKEINSKKEI--------SFPKNIDFIFIGTKSDLYS-----TYTEEYDHL-IS 344 AD +L + + +S + P + I + K D+ T + Y + +S Sbjct: 302 ADSLLFIVDSSSTEATLPDPELIARLPTTLPIIVVRNKIDMTDEQCGLTEVKGYPVIRLS 361 Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFS-IPSHKRHLYHLSQTVRYLEMA--SLNEKDCG 401 + TG+G+E L +K S F + P + +RHL L + +++L L G Sbjct: 362 AKTGQGIENLQQYLKK--SMGFTQHPEGHFLARRRHLDALEKALKHLNNGHEQLVIMQAG 419 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LRLA +L +ITG + LL IFS FCIGK Sbjct: 420 -ELLAEELRLAQSALEEITGEFSSDDLLGEIFSNFCIGK 457 >gi|56477029|ref|YP_158618.1| tRNA modification GTPase TrmE [Aromatoleum aromaticum EbN1] gi|81821140|sp|Q5P4P5|MNME_AZOSE RecName: Full=tRNA modification GTPase mnmE gi|56313072|emb|CAI07717.1| Thiophene and furan oxidation protein ThdF [Aromatoleum aromaticum EbN1] Length = 451 Score = 250 bits (638), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 154/449 (34%), Positives = 248/449 (55%), Gaps = 21/449 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 + I A++T I ++R+SG + + ++ P PR A+ +F G+ +D+G+ Sbjct: 10 DIIAALATAPGRGGIGVVRVSGAALAPFARALTGRE-PKPRHAAFTHFVDAVGKPIDEGI 68 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 L+ FP+P SFTGED E HGG V+ +L ++ RLA PGEFSRRAF NGK+DL Sbjct: 69 LLYFPAPHSFTGEDVIELQGHGGPVVLQLVLARCLEL-GARLAEPGEFSRRAFLNGKMDL 127 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + T + R ++ +SG S + D L +R +EA LDF +E DV+ Sbjct: 128 AQAEAVADLIEASTVVAARSAVRSLSGVFSDEMHRLTDALIDLRMLVEATLDFPDE-DVE 186 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 + L + ++ + + + + G ++R+G +V++G N GKSSL N LA + A Sbjct: 187 FLENARALERLDAIRVKLERVLERARQGALLRSGMNVVLVGQPNVGKSSLLNCLAGDERA 246 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTDI GTTRD + + +EG + + DTAG+RET D VE+ G++RT+ E+ AD+IL + Sbjct: 247 IVTDIAGTTRDAVRETIAIEGIPIHVIDTAGLRETADPVERLGVERTWREIARADVILRI 306 Query: 306 KEI-------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFTGEGLE 352 + + + + P+ ++ I I K DL H +S+ G++ Sbjct: 307 VDARVGPQPGDDAIDAALPEGVERITIFNKIDLCGLEPARLQHDDGVVIQLSAQLALGVD 366 Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG-LDIIAENLRL 411 L +++ + + + + +RHL L + ++ A CG L++ AE LRL Sbjct: 367 LLRSELLRV-AGWHAHGDDVVLARERHLVALRDALTHVVAA---RSQCGALELFAEELRL 422 Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A + +G+ITG + LL +IFS+FCIGK Sbjct: 423 AQIRIGEITGEFSSDDLLGVIFSRFCIGK 451 >gi|83747145|ref|ZP_00944188.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase [Ralstonia solanacearum UW551] gi|83726120|gb|EAP73255.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase [Ralstonia solanacearum UW551] Length = 491 Score = 250 bits (638), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 153/459 (33%), Positives = 245/459 (53%), Gaps = 29/459 (6%) Query: 8 IFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLI 67 I A++T I ++R+SGP V + +C + PR+A+ F DG +D+G+ + Sbjct: 36 IAAIATAPGRGGIGVVRVSGPDVRAVMQAVCGRLLQ-PRQAAYLPFLDADGHAIDRGIAL 94 Query: 68 VFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEFSRRAFENGKID 124 FP+P S+TGED E HGG V+ +L + + +R+A PGEF+RRAF N K+D Sbjct: 95 WFPAPHSYTGEDVLELQGHGGPVVMQLLLSRCLQAGREIGVRVAEPGEFTRRAFLNDKMD 154 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ADLI + TE R + + G S ++++ H+R +EA LDF EEE + Sbjct: 155 LAQAEAVADLIEASTEAAARSAARSLDGAFSQAVHALVERVIHLRMLVEATLDFPEEE-I 213 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + + + ++ + ++Q + G ++R G +V+ G N GKSSL NALA ++ Sbjct: 214 DFLEAADARGQLADIRARLDGVLAQARQGALLREGLHVVLAGQPNVGKSSLLNALAGAEL 273 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIVT I GTTRD + + +EG + I DTAG+R+T+D VE+ GI+RT+ + AD++L Sbjct: 274 AIVTPIAGTTRDKVQQTIQIEGIPLNIVDTAGLRDTEDEVERIGIERTWAAIARADVVLH 333 Query: 305 L---------------KEINSKKEISFPKNIDFIFIGTKSDLYSTYT------EEYDHLI 343 L I+++ P + + + K DL T + + + Sbjct: 334 LLDAADYRAHGLSAEDAAIDARIAGHVPAGVPTLRVINKIDLSGAATPARVDAQPPEVWL 393 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LNEKDCG 401 S+ G G+E L + I + + + +RHL L +L +A+ +++ Sbjct: 394 SARDGSGIELLRAVLLEIAGWQGGGEGLYL-ARERHLSALRTAKDHLAIAADHADQRAQS 452 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LD+ AE LRLA +L ITG + LL +IFS+FCIGK Sbjct: 453 LDLFAEELRLAQEALNSITGAFSSDDLLGVIFSRFCIGK 491 >gi|90408840|ref|ZP_01216982.1| thiophene and furan oxidation protein ThdF [Psychromonas sp. CNPT3] gi|90310067|gb|EAS38210.1| thiophene and furan oxidation protein ThdF [Psychromonas sp. CNPT3] Length = 455 Score = 250 bits (638), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 162/459 (35%), Positives = 245/459 (53%), Gaps = 23/459 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M +TI A +T + IIR+SGP V + I K P R A F G + Sbjct: 1 MTKVTDTIVAQATATGRGGVGIIRVSGPDVELVAKHILGKL-PKVRYAEYLPFMDDKGEV 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + F +P SFTGED E HGG V++ +++ + + NLR A PGEFS RAF N Sbjct: 60 LDQGIALFFKAPHSFTGEDVLELQGHGGPIVMDMLIQAILTIKNLRGAAPGEFSERAFLN 119 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + +E R ++ + GE S+ ++ L H+R ++EA +DF E Sbjct: 120 DKMDLAQAEAIADLIEATSEQAARSALHSLQGEFSNKINALVESLIHLRIYVEASIDFPE 179 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE V S ++ +D+ + ++ S + + G I+R+G K+VI G NAGKSSL N+L Sbjct: 180 EE-VDFLSDGKIASDLAQIVANLESVKKEAQQGAILRDGMKVVIAGRPNAGKSSLLNSLV 238 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 D AIVT+I GTTRDV+ + ++G + I DTAG+RE+ D VEK GI+R + E++ AD Sbjct: 239 GADRAIVTEIAGTTRDVMREYIHIDGMPLHIIDTAGLRESADEVEKIGIERAWKEIKTAD 298 Query: 301 LILLLKEINSKKEI-----------SFPKNIDFIFIGTKSDLY--STYTEEYDHL----I 343 +L + + + P+++ + K+DL S +E + + Sbjct: 299 RVLFMLDATTTDSTDPYAIWPDFMKQLPESVGLTVVRNKADLTGESVLVKEGNQYPVYSL 358 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL--EMASLNEKDCG 401 S+ TG G++ L +K + + +RHL L +L L E G Sbjct: 359 SAKTGLGMQALKEHLKESMGYT-GSTGGGFMARRRHLEALDNAQHHLLEGKVQLEEYKAG 417 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LR+ L ITG + LL IFS FCIGK Sbjct: 418 -ELLAEELRITQQYLSDITGAFSSDDLLGKIFSSFCIGK 455 >gi|223041689|ref|ZP_03611885.1| tRNA modification GTPase TrmE [Actinobacillus minor 202] gi|198246542|gb|ACH82231.1| tRNA modification GTPase TrmE [Actinobacillus minor 202] Length = 452 Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 162/458 (35%), Positives = 258/458 (56%), Gaps = 29/458 (6%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64 KETI A +T + I+R+SGP +V + + K+ PR A+ F DG +LD+G Sbjct: 2 KETIVAQATPIGRGGVGILRVSGPLASEVAKAVVGKELK-PRLANYLPFMDTDGTVLDQG 60 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 + + F +P SFTGED E HGG +++ +L+ + ++ +R+A GEFS +AF N K+D Sbjct: 61 IALFFKAPNSFTGEDVLELQGHGGQVILDLLLKRILEVKGVRIARAGEFSEQAFLNDKLD 120 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ADLI + +E R +++ + GE S+ + +D + ++R+++EA +DF +EE + Sbjct: 121 LAQAEAIADLIDATSEQAARSALKSLQGEFSNKVNELVDSVIYLRTYVEAAIDFPDEE-I 179 Query: 185 QNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 + ++ LNDI+ +++ + K G I+R G K+VI G NAGKSSL NALA Sbjct: 180 DFLADGKIEAKLNDII---TQLANVRKEAKQGSILREGMKVVIAGKPNAGKSSLLNALAG 236 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 ++ AIVT+I GTTRDVL + ++G + I DTAG+R+ D VE+ GI+R + E+ AD Sbjct: 237 REAAIVTNIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIQRAWDEIAQADH 296 Query: 302 ILLLKEINSKKEISF-----------PKNIDFIFIGTKSDLY--STYTEEYDHL----IS 344 +LL+ + + ++ F P+NI I K DL S E+ D +S Sbjct: 297 VLLMIDSSEQQADVFKTEWAEFLAKLPQNIPVTVIRNKVDLSGESEGLEQQDGFTLIRLS 356 Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGL 402 + T G++ L +K + + + +RHL L +LE L + G Sbjct: 357 AQTKVGVDLLREHLKQSMGYQ-SSTEGGFLARRRHLQALETAAEHLERGHVQLTQFFAG- 414 Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LR+ +L +ITG + LL IFS FCIGK Sbjct: 415 ELLAEELRMVQNALSEITGQFTSDDLLGNIFSSFCIGK 452 >gi|85060406|ref|YP_456108.1| tRNA modification GTPase TrmE [Sodalis glossinidius str. 'morsitans'] gi|123518608|sp|Q2NQ72|MNME_SODGM RecName: Full=tRNA modification GTPase mnmE gi|84780926|dbj|BAE75703.1| thiophene and furan oxidation protein [Sodalis glossinidius str. 'morsitans'] Length = 454 Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 163/459 (35%), Positives = 245/459 (53%), Gaps = 29/459 (6%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63 + +TI A++T ++ I+R+SGP V + K P PR+A F DG LD+ Sbjct: 3 QTDTITALATPPGRGSVGILRVSGPLAAPVARALLGKL-PRPRQAEYLPFRDDDGTTLDQ 61 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 G+ + FP P SFTGED E HGG +++ +L+ + MP +R+A PGEFS RAF N K+ Sbjct: 62 GIALFFPGPHSFTGEDVLELQGHGGPVILDLLLQRIVAMPGVRIARPGEFSERAFLNDKL 121 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL +AE++ADLI + + R ++ + G S + + LT++R ++EA +DF +EE Sbjct: 122 DLAQAEAIADLIDASSAQAARSAINSLQGAFSGRIHELVKALTNLRIYVEAAIDFPDEE- 180 Query: 184 VQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 + S ++ LND++ + + QG L +R G K+VI G NAGKSSL NALA Sbjct: 181 IDFLSEGKIEASLNDVIARLERVRTEARQGSL---LREGMKVVIAGKPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVT I GTTRDVL + L+G + I DTAG+R D VE+ GI+R + E+E AD Sbjct: 238 GREAAIVTAIAGTTRDVLREHIHLDGMPLHIIDTAGLRNAGDEVERIGIERAWREIEQAD 297 Query: 301 LILLLKEINSKKEIS------------FPKNIDFIFIGTKSDLYSTYTEEYD------HL 342 +LL+ + + +S P + + K+DL D Sbjct: 298 HVLLMVD-GAATPLSDPDMLWPAFIARLPSGMPVTVVRNKADLTGESVAISDISGYLLIT 356 Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCG 401 +S+ +G G++ L +K + + + +RHL L +L+ C Sbjct: 357 LSAQSGVGMDLLRTHLKQSMGFTGGTEGGFL-ARRRHLDALETAATHLQQGKEQLVSACY 415 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LRLA SL +ITG + LL IFS FCIGK Sbjct: 416 GELLAEELRLAQQSLSEITGEFSSDDLLGRIFSSFCIGK 454 >gi|307261970|ref|ZP_07543627.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306868331|gb|EFN00151.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 452 Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 164/458 (35%), Positives = 254/458 (55%), Gaps = 29/458 (6%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64 K+TI A +T + I+R+SGP +V + + K+ PR A+ F DG +LD+G Sbjct: 2 KDTIVAQATPIGRGGVGILRISGPLAQEVAKEVLGKELK-PRLANYLPFKDQDGTVLDQG 60 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 + + F +P SFTGED E HGG +++ +L+ + + +R+A GEFS +AF N K+D Sbjct: 61 IALFFKAPNSFTGEDVLELQGHGGQVILDILLKRILTIKGIRIARAGEFSEQAFLNDKLD 120 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ADLI + +E R +++ + GE S+ Q +D + ++R+++EA +DF +EE + Sbjct: 121 LAQAEAIADLIDATSEQAARSALKSLQGEFSNKINQLVDSVIYLRTYVEAAIDFPDEE-I 179 Query: 185 QNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 + ++ LNDI+ N + QG I+R G K+VI G NAGKSSL NALA Sbjct: 180 DFLADGKIEGHLNDIIRQLNGVRKEAKQGA---ILREGMKVVIAGRPNAGKSSLLNALAG 236 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 ++ AIVT+I GTTRDVL + ++G + I DTAG+RE D VEK GI+R + E+E AD Sbjct: 237 REAAIVTNIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVEKIGIQRAWDEIEQADH 296 Query: 302 ILLLKEINSKKEISF-----------PKNIDFIFIGTKSDLYSTYT--EEYDHL----IS 344 +LL+ + + +F P++I I K DL +E D +S Sbjct: 297 VLLMIDSTEQTAEAFKTEWADFLAKLPQSIPVTVIRNKVDLSGEAEGLQELDGFTLIRLS 356 Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGL 402 + T G++ L +K + + + +RHL L +LE L + G Sbjct: 357 AQTKVGVDLLREHLKKSMGYQ-SSTEGGFLARRRHLQALETAAEHLERGHIQLTQFFAG- 414 Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LR+ +L +ITG + LL IFS FCIGK Sbjct: 415 ELLAEELRMVQNALSEITGQFTSDDLLGNIFSSFCIGK 452 >gi|157964067|ref|YP_001504101.1| tRNA modification GTPase TrmE [Shewanella pealeana ATCC 700345] gi|189036209|sp|A8HAH9|MNME_SHEPA RecName: Full=tRNA modification GTPase mnmE gi|157849067|gb|ABV89566.1| tRNA modification GTPase TrmE [Shewanella pealeana ATCC 700345] Length = 453 Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 163/454 (35%), Positives = 249/454 (54%), Gaps = 23/454 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + IIR+SG V + P R A F G ++D+G+ Sbjct: 4 DTIVAQATAPGRGGVGIIRVSGDLATNVAIAVLGHI-PKTRYADYCDFKDEAGEVIDQGI 62 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + F P SFTGED E HGG V++ +++ + ++ LR+A PGEFS +AF N K+DL Sbjct: 63 ALFFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVMEVDGLRIAKPGEFSEQAFMNDKLDL 122 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E + ++ + GE S+ ++K+T++R ++EA +DF +EE V Sbjct: 123 TQAEAIADLIDATSEQAAKSALNSLQGEFSTQIHDLVEKVTNLRLYVEAAIDFPDEE-VD 181 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S ++ + + + + K G IIR G K+VI G NAGKSSL NALA K+ A Sbjct: 182 FLSDGKIAASLNGIVGKLDGVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKESA 241 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVT+I GTTRDVL + L+G + I DTAG+R+T D VEK GI+R + E++ AD +L + Sbjct: 242 IVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTVDTVEKIGIERAWDEIKTADRVLFM 301 Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYS---TYTEEYDH---LISSFTG 348 + + I P N+ + K+DL + T+E H IS+ TG Sbjct: 302 VDGTTTAAIDPHEIWPDFIDRLPSNLGVTVVRNKADLTGEDLSVTQEAGHSVYRISAKTG 361 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIA 406 G+E+L +KS++ + L + +RHL L +L + L G +++A Sbjct: 362 LGVEDLKQHLKSLMGYQ-SNLEGGFIARRRHLEALDLASSHLMLGKEQLEVYQAG-ELLA 419 Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E LR+ ++L +ITG + LL IFS FCIGK Sbjct: 420 EELRMCQMALSEITGKFTSDDLLGKIFSSFCIGK 453 >gi|33239666|ref|NP_874608.1| tRNA modification GTPase TrmE [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|46577393|sp|Q7VE01|MNME_PROMA RecName: Full=tRNA modification GTPase mnmE gi|33237191|gb|AAP99260.1| Predicted GTPase [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 455 Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 158/456 (34%), Positives = 265/456 (58%), Gaps = 28/456 (6%) Query: 5 KETIFAVSTGALPS--AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62 +E I A+++ P AI+I+++SG S +V + + + P L G ++D Sbjct: 8 EENIAAIASAVAPGQGAIAIVKVSGASAKEVVKNVVRT----PSNKIWSSHKILYGHVID 63 Query: 63 KG--------LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114 K L+++ P SFTGED E H HGG+ VV +L+ + K P R A PGEFS Sbjct: 64 KSTKKNIDEVLILIMDGPRSFTGEDVVEIHCHGGLIVVQQVLDAILKQPKTRRAFPGEFS 123 Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174 +RA NG++D+ +AE++ DLI + ++ +L++ G+ G++++ +KL S IEA Sbjct: 124 QRAVLNGRLDITQAEAINDLIHARSQKAAQLAIAGIDGDITNKINYLREKLLDQLSEIEA 183 Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234 +DF EED+ +SK++L D++ ++ ++ I+ K G +IRNG K+ ++G N GKSS Sbjct: 184 RIDF--EEDLPKLNSKKLLTDLMLIRAELKQLINDAKQGSLIRNGLKVALVGLPNVGKSS 241 Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294 + N L+K + AIVTD+PGTTRD+L ++ LEG + + DTAGIRET++ +EK G+ + Sbjct: 242 ILNLLSKHERAIVTDLPGTTRDLLESEIILEGVPITLIDTAGIRETNNEIEKIGVSLSQK 301 Query: 295 EVENADLILLLKEIN---SKKEISF----PKNIDFIFIGTKSDLYSTYTEEYDH-LISSF 346 + AD+++L+ +++ +K + + PK + IG K+DL S T H +++ Sbjct: 302 TLFTADIVVLIFDLSKGWNKNDQNLLEKIPKGTPTLIIGNKADLKSQSTNIQPHATMTAI 361 Query: 347 TGEGLEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGLDI 404 TGEG +ELI ++ + +N+ + + ++ ++R L + V L ++ + + D Sbjct: 362 TGEGEKELIQELLKLAGANELEGIEVAL--NQRQLDLVKVAVNALDQIEKVAAESLAWDF 419 Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +LR A LG++TG E LLD IFS+FCIGK Sbjct: 420 WTIDLREAIYKLGELTGEEVTEALLDRIFSRFCIGK 455 >gi|294138797|ref|YP_003554775.1| tRNA modification GTPase TrmE [Shewanella violacea DSS12] gi|293325266|dbj|BAI99996.1| tRNA modification GTPase TrmE [Shewanella violacea DSS12] Length = 453 Score = 249 bits (637), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 157/454 (34%), Positives = 251/454 (55%), Gaps = 21/454 (4%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64 ++TI A +T + IIR+SG +V + P R A F DG ++D+G Sbjct: 3 EDTIVAQATAPGRGGVGIIRISGDQASEVAMAMLGHI-PKTRYADYCDFKTADGVVIDQG 61 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 + + F P SFTGED E HGG V++ +++ + + ++R+A PGEFS +AF N K+D Sbjct: 62 IALYFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVLETKDIRIARPGEFSEQAFMNDKLD 121 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ADLI + +E + ++ + GE S+ ++K+T++R ++EA +DF +EE V Sbjct: 122 LTQAEAIADLIDATSEQAAKSALNSLQGEFSTEVHALVEKVTNLRLYVEAAIDFPDEE-V 180 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 S ++ + + + S + K G IIR G K+VI G NAGKSSL NALA K+ Sbjct: 181 DFLSDGKIAGSLNKIITRLDSVKASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKES 240 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIVT++ GTTRDVL + ++G + I DTAG+R+T D VEK GI+R + E+E AD +L Sbjct: 241 AIVTEVAGTTRDVLREHIHIDGMPLHIIDTAGLRDTSDTVEKIGIERAWAEIETADQVLF 300 Query: 305 LKEINSKKEIS-----------FPKNIDFIFIGTKSDLYS---TYTEEYDH---LISSFT 347 + + + + P + + K+DL T+++ H IS+ T Sbjct: 301 MVDGTTTDAVDPHEIWPDFIDRLPSKLGITVVRNKADLTGESLELTQDHGHPVYRISAKT 360 Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIA 406 G G++ + +KS++ + L + +RHL L +L + E +++A Sbjct: 361 GLGIDSVKQHLKSLMGYQ-SNLEGGFIARRRHLEALDLASSHLMLGKEQLEVYLAGELLA 419 Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E LR++ ++L +ITG + LL IFS FCIGK Sbjct: 420 EELRMSQMALSEITGKFTSDDLLGKIFSSFCIGK 453 >gi|332525677|ref|ZP_08401826.1| tRNA modification GTPase TrmE [Rubrivivax benzoatilyticus JA2] gi|332109236|gb|EGJ10159.1| tRNA modification GTPase TrmE [Rubrivivax benzoatilyticus JA2] Length = 449 Score = 249 bits (637), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 162/456 (35%), Positives = 252/456 (55%), Gaps = 28/456 (6%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64 ++ I AV+T A A+ I+R SGP + + + + PR A+L F DG +LD+G Sbjct: 2 RDPIAAVATAAGRGAVGIVRASGPDLAPLVQALFGRALA-PRAATLLPFTAADGSVLDRG 60 Query: 65 LLIVFPSPESFTGEDSAEFHVHGG----IAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 L I FP+P S+TGED E HGG ++ +LE A + LRLA GEF+ RAF N Sbjct: 61 LAIHFPAPNSYTGEDVLELQAHGGPVLLQLLLARVLEAGAGI-GLRLARAGEFTERAFLN 119 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 KIDL +AE++ADLI + TE R + + G S+ ++ +R+ +EA LDF E Sbjct: 120 DKIDLAQAEAVADLIDASTEAAARSAARSLDGAFSAEIHTLAGRIVELRALVEATLDFPE 179 Query: 181 EED--VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 EE ++ ++E L+ I + QG L +R G ++VI G N GKSSL NA Sbjct: 180 EEIDFLEKARARERLDAIEAAIGAALARARQGAL---LREGMRVVIAGQPNVGKSSLLNA 236 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEVE 297 LA ++AIVT IPGTTRD + + +EG + + DTAG+RE D VE+ GI R++ +E Sbjct: 237 LAGAELAIVTPIPGTTRDRVAETIQIEGVPLHVVDTAGLREHAADEVERIGIGRSWEAIE 296 Query: 298 NADLILLLKEINSKKEISFP----------KNIDFIFIGTKSDLYSTYTEEYDHLISSFT 347 AD +L + ++ + + ++ + D + + K+D + + ++S+ Sbjct: 297 GADAVLFVHDLTRRGDAAYEAAEAEIATRLQGADVLHVHNKADAAAQVAGD-GVVLSAKA 355 Query: 348 GEGLEELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMASLN--EKDCGLDI 404 G GLE L ++ + ++ P + + RH+ L +T+ +L +A + ++D LD+ Sbjct: 356 GTGLETLRREL--LRRAGWQAQPDGVFIARARHVDALQRTLAHLHLAQAHAAQRDAALDL 413 Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +AE LRL+ +LG+ITG E LL IF +FCIGK Sbjct: 414 LAEELRLSHQALGEITGEFGTEDLLGEIFGRFCIGK 449 >gi|212211699|ref|YP_002302635.1| tRNA modification GTPase TrmE [Coxiella burnetii CbuG_Q212] gi|212010109|gb|ACJ17490.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase [Coxiella burnetii CbuG_Q212] Length = 473 Score = 249 bits (637), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 174/463 (37%), Positives = 258/463 (55%), Gaps = 45/463 (9%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFI--CKKKKPFPRKASLRYFFGLDGRILDK 63 ETI A +T + I ++R+SG + + I C P PR A+ F G ++D+ Sbjct: 28 ETIAAQATPSGRGGIGVVRVSGEKTKAIAQKILGCV---PKPRYATFVKFRD-SGSVIDE 83 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 G+ + FP P SFTGED E H HGG V++ +L + K R A PGEFS RAF N KI Sbjct: 84 GISLYFPKPNSFTGEDVLELHGHGGPVVMDRLLNTVLKA-GARQARPGEFSERAFLNNKI 142 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL +AE++ADLI++ +E R +M + GE S Q +D L +R +IEA +DF EEE Sbjct: 143 DLAQAEAVADLINASSEQAARSAMRSLQGEFSKRIHQLVDALIQLRMYIEASIDFPEEEI 202 Query: 184 --VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 + + KE L ++ +I QG L +R G +VI G N GKSSL N L+ Sbjct: 203 DFLADERIKETLENLTHQVQEIEKTAKQGAL---LREGITVVIAGEPNVGKSSLLNLLSG 259 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 ++ AIVTDI GTTRD++ + ++G + + DTAG+R T+D+VEKEG++RT V+ ADL Sbjct: 260 QETAIVTDIAGTTRDIIRESIHIDGLPIHVVDTAGLRLTEDVVEKEGVRRTQKAVQQADL 319 Query: 302 ILLLKEINS-----KKEIS--FPKN---IDFIFIGTKSDLYSTY----TEEYDHL-ISSF 346 +LL+ + + KK I+ F +N I + + K DL +EY H+ +S Sbjct: 320 LLLMIDASKPTEDFKKIIAQWFSENDNKIPTLIVENKIDLIGEAPRKENKEYPHIKLSVK 379 Query: 347 TGEGLEELINKIKSILS------NKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS---LNE 397 T G+E L N +K+ N F + +RH +++ +L+ A+ LN+ Sbjct: 380 TRAGVELLKNHLKNTAGFEATHENNFI-------ARRRHCDAIARASAFLKNANNHLLNQ 432 Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 K +++AE+L+LA +L +ITG + LL IFS+FCIGK Sbjct: 433 K--AGELVAEDLKLAQNALSEITGEFTSDDLLGKIFSEFCIGK 473 >gi|302185835|ref|ZP_07262508.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. syringae 642] Length = 456 Score = 249 bits (637), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 164/461 (35%), Positives = 248/461 (53%), Gaps = 26/461 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 MN +ETI A++T + I+R+SGP + E I + PR A F G++ Sbjct: 1 MNVPRETIAAIATAQGRGGVGIVRVSGPLASKAAEAIIGRTLK-PRFAHYGPFVDDAGQV 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG V++ +L+ ++ + RLA PGEFS RAF N Sbjct: 60 LDEGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQLGS-RLARPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE+++DLI + + R ++ + G S +KL +R ++EA +DF E Sbjct: 119 DKLDLAQAEAISDLIEASSAQAARNALRSLQGAFSRRVDNLTEKLISLRIYVEAAIDFPE 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + + VL+ + ++ ++S+ + + G ++R+G +VI G NAGKSSL NALA Sbjct: 179 EE-IDFLADGHVLSMLDDVRAELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVT+I GTTRDVL + ++G + + DTAG+R+T D VE G++R + AD Sbjct: 238 GREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTQDQVEMIGVQRALKAIGEAD 297 Query: 301 LILLLKEINSKKEI-----------SFPKNIDFIFIGTKSDLYST----YTEEYDHLISS 345 ILL+ + + + P I K+DL T H+ S Sbjct: 298 RILLVVDATAPEAADPFALWPEFLEQRPDPSKVTLIRNKADLSGDRVDLQTSVDGHVTIS 357 Query: 346 FT----GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKD 399 + GEGLE L +K+ + + + S + +RHL L LE A L Sbjct: 358 LSARSGGEGLELLREHLKACMGYE-QTSESSFSARRRHLEALRHASDSLEHGRAQLTLAG 416 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G +++AE+LR A +LG+ITG + LL IFS FCIGK Sbjct: 417 AG-ELLAEDLRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 456 >gi|307297010|ref|ZP_07576826.1| tRNA modification GTPase TrmE [Sphingobium chlorophenolicum L-1] gi|306877536|gb|EFN08764.1| tRNA modification GTPase TrmE [Sphingobium chlorophenolicum L-1] Length = 426 Score = 249 bits (637), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 160/440 (36%), Positives = 240/440 (54%), Gaps = 21/440 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFF-GLDGRILDKG 64 ++IFA+S+GA P+ I +IR+SGPS + P PR A L DG +LD+ Sbjct: 3 DSIFALSSGAPPAGIGVIRISGPSAGPALIALAGALPP-PRHARLSSLTDPRDGALLDRA 61 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 L++ FP P + TGED AE H HGG AV+ I E L+ +P LR A GEF+RRAF NG++D Sbjct: 62 LILWFPGPSTVTGEDLAELHCHGGRAVIAAIEEALSTLPGLRRAEAGEFTRRAFANGRMD 121 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L E L+DL+++ET+ QRR ++ G S W L + + EA LDFS+E+DV Sbjct: 122 LNAVEGLSDLLAAETQQQRRAALLMAEGHFSRRVEDWRRTLLDLSAMTEAALDFSDEDDV 181 Query: 185 QNFS-SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 + + I L +D+ + I E +R+G ++V+ G NAGKS+L N L ++ Sbjct: 182 PDEGIEARIGQGIQTLADDVEA-ILAAPSAERLRDGVRVVLAGPPNAGKSTLLNRLVGRE 240 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLI 302 AIV+DI GTTRD + + L G DTAG+R ET D +E G++R ++ AD+I Sbjct: 241 AAIVSDIAGTTRDRIEVPAALGGAAFLFMDTAGLRDETSDAIEAIGMERARGALDAADII 300 Query: 303 LLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL-ISSFTGEGLEELINKIKSI 361 L L + D I + + D T+ L +S+ TGEG+ EL+ + Sbjct: 301 LWLGPADEA------PRADAILLAPQCD---RRTDSRPGLRLSAITGEGMPELVALLLDR 351 Query: 362 LSNKFK-KLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKIT 420 + + +++ +R L T +L A++++ L I+AE LR A ++ ++T Sbjct: 352 AARLLPGEGDYALHRRQRDAASLLHT--HLASAAVSDD---LLIVAELLRQARNAIDQLT 406 Query: 421 GCVDVEQLLDIIFSKFCIGK 440 G E +LD +FS FCIGK Sbjct: 407 GRASTEDMLDHLFSGFCIGK 426 >gi|240949809|ref|ZP_04754138.1| tRNA modification GTPase TrmE [Actinobacillus minor NM305] gi|240295726|gb|EER46421.1| tRNA modification GTPase TrmE [Actinobacillus minor NM305] Length = 452 Score = 249 bits (636), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 162/458 (35%), Positives = 257/458 (56%), Gaps = 29/458 (6%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64 KETI A +T + I+R+SGP +V + + K+ PR A+ F DG +LD+G Sbjct: 2 KETIVAQATPIGRGGVGILRVSGPLANEVAKAVVGKELK-PRLANYLPFMDTDGTVLDQG 60 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 + + F +P SFTGED E HGG +++ +L+ + + +R+A GEFS +AF N K+D Sbjct: 61 IALFFKAPNSFTGEDVLELQGHGGQVILDLLLKRILAVKGVRIARAGEFSEQAFLNDKLD 120 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ADLI + +E R +++ + GE S+ + +D + ++R+++EA +DF +EE + Sbjct: 121 LAQAEAIADLIDATSEQAARSALKSLQGEFSNKVNELVDSVIYLRTYVEAAIDFPDEE-I 179 Query: 185 QNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 + ++ LNDI+ +++ + K G I+R G K+VI G NAGKSSL NALA Sbjct: 180 DFLADGKIEAKLNDII---TQLANVRKEAKQGSILREGMKVVIAGKPNAGKSSLLNALAG 236 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 ++ AIVT+I GTTRDVL + ++G + I DTAG+R+ D VE+ GI+R + E+ AD Sbjct: 237 REAAIVTNIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIQRAWDEIAQADH 296 Query: 302 ILLLKEINSKKEISF-----------PKNIDFIFIGTKSDLY--STYTEEYDHL----IS 344 +LL+ + + ++ F P+NI I K DL S E+ D +S Sbjct: 297 VLLMIDSSEQQADVFKTEWAEFLAKLPQNIPVTVIRNKVDLSGESEGLEQQDGFTLIRLS 356 Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGL 402 + T G++ L +K + + + +RHL L +LE L + G Sbjct: 357 AQTKVGVDLLREHLKQSMGYQ-SSTEGGFLARRRHLQALETAAEHLERGHVQLTQFFAG- 414 Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LR+ +L +ITG + LL IFS FCIGK Sbjct: 415 ELLAEELRMVQNALSEITGQFTSDDLLGNIFSSFCIGK 452 >gi|313111481|ref|ZP_07797282.1| putative GTPase for tRNA modification and thiophene and furan oxidation [Pseudomonas aeruginosa 39016] gi|310883784|gb|EFQ42378.1| putative GTPase for tRNA modification and thiophene and furan oxidation [Pseudomonas aeruginosa 39016] Length = 455 Score = 249 bits (636), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 164/461 (35%), Positives = 254/461 (55%), Gaps = 27/461 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M ETI A++T + I+R+SGP Q+ + ++ R A F G++ Sbjct: 1 MQAATETIVAIATAQGRGGVGIVRVSGPLAGQMAVAVSGRQLK-ARHAHYGPFLDAGGQV 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+GL + FP P SFTGED E HGG V++ +++ ++ R A PGEFS RAF N Sbjct: 60 IDEGLSLYFPGPNSFTGEDVLELQGHGGPVVLDLLVQRCLEL-GARQARPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + +E R ++ + GE S ++L +R ++EA +DF E Sbjct: 119 DKLDLAQAEAIADLIEASSEQAARNALRSLQGEFSRRVHALTEQLISLRIYVEAAIDFPE 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + + VL + ++ ++S+ + G ++R+G +VI G NAGKSSL NALA Sbjct: 179 EE-IDFLADGHVLGLLEKVRTELSTVQREASQGALLRDGMTVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + ++G + + DTAG+R+T+D VEK G++R + AD Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTEDHVEKIGVERALKAIGEAD 297 Query: 301 LILLLKEINSKKEIS----FPKNID-------FIFIGTKSDLYS---TYTEEYD-HL--- 342 +LL+ + + + +P+ +D I K+DL + E D H+ Sbjct: 298 RVLLVVDATAPEAADPFSLWPEFLDQRPEPGKVTLIRNKADLSTESIGLEESADGHVTIT 357 Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFS-IPSHKRHLYHLSQTVRYLE--MASLNEKD 399 +S+ T GLE L +K+ + F++ S + +RHL L Q + LE + L Sbjct: 358 LSARTSAGLELLREHLKACMG--FEQTAESGFSARRRHLEALRQAGQALEHGHSQLIHNG 415 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G +++AE+LR A LG+ITG + LL IFS FCIGK Sbjct: 416 AG-ELLAEDLRQAQQHLGEITGAFTPDDLLGRIFSSFCIGK 455 >gi|190171196|gb|ACE63668.1| ThdF [Enterobacter helveticus] gi|190171198|gb|ACE63669.1| ThdF [Enterobacter helveticus] gi|190171200|gb|ACE63670.1| ThdF [Enterobacter helveticus] gi|190171202|gb|ACE63671.1| ThdF [Enterobacter helveticus] gi|190171204|gb|ACE63672.1| ThdF [Enterobacter helveticus] gi|190171206|gb|ACE63673.1| ThdF [Enterobacter helveticus] gi|190171208|gb|ACE63674.1| ThdF [Enterobacter helveticus] gi|190171210|gb|ACE63675.1| ThdF [Enterobacter helveticus] gi|190171212|gb|ACE63676.1| ThdF [Enterobacter helveticus] gi|190171216|gb|ACE63678.1| ThdF [Enterobacter helveticus] Length = 439 Score = 249 bits (636), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 154/434 (35%), Positives = 241/434 (55%), Gaps = 23/434 (5%) Query: 19 AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGE 78 + I+R+SG V + + K P PR A F D LD+G+ + FP P SFTGE Sbjct: 10 GVGILRISGKQARDVAQAVLGKL-PKPRYADYLPFKDSDNTPLDQGIALWFPGPNSFTGE 68 Query: 79 DSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSE 138 D E HGG +++ +L+ + +P +R+A PGEFS RAF N K+DL +AE++ADLI + Sbjct: 69 DVLELQGHGGPVILDLLLKRILTIPGVRIARPGEFSERAFLNDKLDLAQAEAIADLIDAS 128 Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILF 198 +E R ++ + G S+ ++ LTH+R F+EA +DF +EE + S ++ + Sbjct: 129 SEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEE-IDFLSDGKIEAQLNT 187 Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 + D+ + ++ + G ++R G K+VI G NAGKSSL NALA ++ AIVTDI GTTRDVL Sbjct: 188 VIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVL 247 Query: 259 TIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS--- 315 + ++G + I DTAG+RE D VE+ GI+R + E+E AD +L + + + + Sbjct: 248 REHIHIDGMPLHIIDTAGLREASDEVERIGIERAWKEIEQADRVLFMVDGTTTDAVDPAQ 307 Query: 316 --------FPKNIDFIFIGTKSDLY---STYTEEYDH---LISSFTGEGLEELINKIKSI 361 P+N+ + K+D+ + +E H +S+ +GEG+E L + +KS Sbjct: 308 IWPDFMARLPQNLPITVVRNKADVTGEPAGLSEVNGHSLIRLSARSGEGVEVLRDHLKSS 367 Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSLGKI 419 + + + +RHL L + +L+ A L G +++AE LRLA SL +I Sbjct: 368 MGFD-TNMEGGFLARRRHLQALEEAANHLQQGKAQLLGAWAG-ELLAEELRLAQQSLSEI 425 Query: 420 TGCVDVEQLLDIIF 433 TG + LL IF Sbjct: 426 TGEFTSDDLLGRIF 439 >gi|218681276|ref|ZP_03529173.1| tRNA modification GTPase TrmE [Rhizobium etli CIAT 894] Length = 212 Score = 249 bits (636), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 117/212 (55%), Positives = 158/212 (74%) Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 ++ FP+P SFTGED AE +HG AV+ + L +P +R+A GEFSRRAFENGK+DL Sbjct: 1 MLFFPAPNSFTGEDVAELQIHGSRAVLAALFHALGDVPGVRMAVEGEFSRRAFENGKLDL 60 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +E E LADLI +ETEMQRRL++E +G LS++Y W ++LT R+ IEA+LDF +E+DV Sbjct: 61 VEIEGLADLIGAETEMQRRLAIEQSAGGLSAIYDSWAERLTRARAMIEAELDFPDEDDVP 120 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S V D+ L+++I H++ GEIIR+G+K+VI G NAGKSSL NAL ++DVA Sbjct: 121 GSVSDMVWTDMEKLRSEIEEHLAAASAGEIIRDGFKVVIAGAPNAGKSSLLNALTRRDVA 180 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 IVT+I GTTRDVL +DLD++GYL+K+ DTAG+ Sbjct: 181 IVTEIAGTTRDVLQVDLDIDGYLIKLYDTAGL 212 >gi|170724368|ref|YP_001752056.1| tRNA modification GTPase TrmE [Pseudomonas putida W619] gi|205415795|sp|B1JFV3|MNME_PSEPW RecName: Full=tRNA modification GTPase mnmE gi|169762371|gb|ACA75687.1| tRNA modification GTPase TrmE [Pseudomonas putida W619] Length = 456 Score = 249 bits (636), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 165/463 (35%), Positives = 257/463 (55%), Gaps = 30/463 (6%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 MN +ETI A++T + I+RLSGP + + I + PR A F +G + Sbjct: 1 MNTVRETIAAIATAQGRGGVGIVRLSGPLAAKAGQLITGRTLT-PRHAHYGPFRDQEGLV 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG V++ +L+ ++ RLA PGEFS RAF N Sbjct: 60 LDEGIALFFPGPNSFTGEDVLELQGHGGPVVLDMLLQRCVQV-GCRLARPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + + R ++ + GE S + L +R ++EA +DF E Sbjct: 119 DKLDLAQAEAIADLIEASSSQAARNALRSLQGEFSKRVHSLTEALIALRIYVEAAIDFPE 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + + VL+ + ++ ++S+ + G ++R+G +VI G NAGKSSL N LA Sbjct: 179 EE-IDFLADGHVLSMLDSVRAELSTVQREAGQGALLRDGMTVVIAGRPNAGKSSLLNQLA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVT I GTTRD+L + ++G + + DTAG+R+TDD VEK G++R + AD Sbjct: 238 GREAAIVTAIAGTTRDILREHIHIDGMPLHVVDTAGLRDTDDHVEKIGVERALKAIGEAD 297 Query: 301 LILLLKEINSKKEIS-----FPKNID-------FIFIGTKSDLYSTYT--EEYD--HLIS 344 +LL+ + ++ E S +P+ +D I K+DL E+ D H+ Sbjct: 298 RVLLVVD-STAPEASDPFALWPEFLDQRPDPGKVTLIRNKADLSGEPVGLEQCDDGHVTI 356 Query: 345 SFTGEGLEE----LINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNE 397 + + +G ++ L + +K+ + + + FS + +RHL L Q +LE A L Sbjct: 357 TLSAKGDDQGLLLLRDHLKACMGYEQTAESGFS--ARRRHLDALRQACAHLEHGRAQLTL 414 Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G +++AE+LR A +LG+ITG + LL IFS FCIGK Sbjct: 415 AGAG-ELLAEDLRQAQHALGEITGAFSSDDLLGRIFSSFCIGK 456 >gi|254237759|ref|ZP_04931082.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|126169690|gb|EAZ55201.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] Length = 455 Score = 249 bits (636), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 164/460 (35%), Positives = 252/460 (54%), Gaps = 25/460 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M ETI A++T + I+R+SGP Q+ + ++ R A F G++ Sbjct: 1 MQAATETIVAIATAQGRGGVGIVRVSGPLAGQMAVAVSGRQLK-ARHAHYGPFLDAGGQV 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+GL + FP P SFTGED E HGG V++ +++ ++ R A PGEFS RAF N Sbjct: 60 IDEGLSLYFPGPNSFTGEDVLELQGHGGPVVLDLLVQRCLEL-GARQARPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + +E R ++ + GE S ++L +R ++EA +DF E Sbjct: 119 DKLDLAQAEAIADLIEASSEQAARNALRSLQGEFSRRVHALTEQLISLRIYVEAAIDFPE 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + + VL + ++ ++S+ + G ++R+G +VI G NAGKSSL NALA Sbjct: 179 EE-IDFLADGHVLGLLEKVRTELSTVQREASQGALLRDGMTVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + ++G + + DTAG+R+T+D VEK G++R + AD Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTEDHVEKIGVERALKAIGEAD 297 Query: 301 LILLLKEINSKKEIS----FPKNID-------FIFIGTKSDLYS---TYTEEYD-HL--- 342 +LL+ + + + +P+ +D I K+DL + E D H+ Sbjct: 298 RVLLVVDATAPEAADPFSLWPEFLDQRPEPGKVTLIRNKADLSTESIGLEESADGHVTIT 357 Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFS-IPSHKRHLYHLSQTVRYLEMASLNEKDCG 401 +S+ TG GLE L +K+ + F++ S + +RHL L + LE G Sbjct: 358 LSARTGAGLELLREHLKACMG--FEQTAESGFSARRRHLEALRLAGQALEHGYSQLIHNG 415 Query: 402 LD-IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D ++AE+LR A LG+ITG + LL IFS FCIGK Sbjct: 416 ADELLAEDLRQAQQHLGEITGAFTPDDLLGRIFSSFCIGK 455 >gi|221126301|ref|XP_002165330.1| PREDICTED: similar to predicted protein [Hydra magnipapillata] Length = 498 Score = 249 bits (636), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 157/427 (36%), Positives = 228/427 (53%), Gaps = 33/427 (7%) Query: 45 PRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGG-----------IAVVN 93 PR+A+ F G+ +D GL + FP P SFTGED E HGG +A+ N Sbjct: 74 PREATYLPFPDEKGQPIDHGLALFFPGPHSFTGEDVLELQAHGGPVVLQLLVARCLALAN 133 Query: 94 GILEELAK---MPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGM 150 + E +P LR+A GEF++RAF N K+DL +AE++ADLI + TE R + + + Sbjct: 134 SVQTEGVSSVLLPGLRIAEAGEFTQRAFLNNKLDLAQAEAIADLIDASTEAAARSASQSL 193 Query: 151 SGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQG 210 SG S G D L H+R +EA LDF EEE + + + + L+ + +++ Sbjct: 194 SGAFSKEIGILRDALIHLRMLVEATLDFPEEE-IDFLQKADAVGQLQRLQQALQQVLAKA 252 Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270 G ++R G K+VI G NAGKSSL NALA ++AIVT I GTTRD + + +EG + Sbjct: 253 TQGALLREGLKVVIAGQPNAGKSSLLNALAGAELAIVTPIAGTTRDKVQETIQIEGVPLH 312 Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF-------------- 316 I DTAG+R +DD VEK GI+R + +E AD +L L ++ I + Sbjct: 313 IIDTAGLRASDDAVEKIGIERAWQAIEAADAVLFLHDLTRSSAIEYIAADADIAGAIAEK 372 Query: 317 -PKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375 P +I I + KSD + T +S+ TG GL+ L + + + + + + Sbjct: 373 LPASIPVIHVWNKSDAATPETGLEGIFLSAKTGVGLDALRQNLLTAAGWQPAQ-SGAFMA 431 Query: 376 HKRHLYHLSQTVRYLEMAS--LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIF 433 +RH+ L ++L+MAS L LD++AE LRL +L ITG + LL +IF Sbjct: 432 RQRHVQALHLVGQHLDMASELLASGSAALDLLAEELRLGQNALNSITGEFGADDLLGVIF 491 Query: 434 SKFCIGK 440 SKFCIGK Sbjct: 492 SKFCIGK 498 >gi|190171170|gb|ACE63655.1| ThdF [Citrobacter sp. NZ3872_90] Length = 439 Score = 249 bits (635), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 153/434 (35%), Positives = 241/434 (55%), Gaps = 23/434 (5%) Query: 19 AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGE 78 + I+R+SG +V E + K P PR A F DG LD+G+ + FP P SFTGE Sbjct: 10 GVGILRISGLKASEVAETVLGKL-PKPRYADYLPFKDEDGSALDQGIALWFPGPNSFTGE 68 Query: 79 DSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSE 138 D E HGG +++ +L+ + +P LR+A PGEFS RAF N K+DL +AE++ADLI + Sbjct: 69 DVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKLDLAQAEAIADLIDAS 128 Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILF 198 +E R ++ + G S+ ++ LTH+R ++EA +DF +EE + S ++ + Sbjct: 129 SEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE-IDFLSDGKIEAQLNS 187 Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 + D+ + ++ + G ++R G K+VI G NAGKSSL NALA ++ AIVTDI GTTRDVL Sbjct: 188 VMADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVL 247 Query: 259 TIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS--- 315 + ++G + I DTAG+R+ D VE+ GI+R + E+E AD +L + + + + Sbjct: 248 REHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAD 307 Query: 316 --------FPKNIDFIFIGTKSDLYST---YTEEYDH---LISSFTGEGLEELINKIKSI 361 P + + K+D+ +E H +S+ TGEG++ L N +K Sbjct: 308 IWPDFIARLPAKLPITVVRNKADITGETLGLSEVNGHSLVRLSARTGEGVDVLRNHLKQS 367 Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSLGKI 419 + + + + +RHL L++ +L+ A L G +++AE LRLA +L +I Sbjct: 368 MGFE-TNMEGGFLARRRHLQALAEAAEHLQQGKAQLLGAWAG-ELLAEELRLAQQNLSEI 425 Query: 420 TGCVDVEQLLDIIF 433 TG + LL IF Sbjct: 426 TGEFTSDDLLGRIF 439 >gi|190171240|gb|ACE63690.1| ThdF [Enterobacter sp. KM877_04] Length = 439 Score = 249 bits (635), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 154/435 (35%), Positives = 240/435 (55%), Gaps = 23/435 (5%) Query: 18 SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77 + I+R+SG +V E + K P PR A F DG LD+G+ + FP P SFTG Sbjct: 9 GGVGILRISGLKAREVAEAVLGKL-PKPRYADYLPFKDTDGTPLDQGIALWFPGPNSFTG 67 Query: 78 EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137 ED E HGG +++ +L+ + +P LR+A PGEFS RAF N K+DL +AE++ADLI + Sbjct: 68 EDVLELQGHGGPVILDLLLKRILMLPGLRIAKPGEFSERAFLNDKLDLAQAEAIADLIDA 127 Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197 +E R ++ + G S+ ++ LTH+R ++EA +DF +EE + S ++ + Sbjct: 128 SSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE-IDFLSDGKIEAQLN 186 Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257 + D+ + ++ + G ++R G K+VI G NAGKSSL NALA ++ AIVTDI GTTRDV Sbjct: 187 SVMADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDV 246 Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS-- 315 L + ++G + I DTAG+R+ D VE+ GI+R + E+E AD +L + + + + Sbjct: 247 LREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIELADRVLFMVDGTTTDAVDPA 306 Query: 316 ---------FPKNIDFIFIGTKSDLYSTY---TEEYDH---LISSFTGEGLEELINKIKS 360 P + + K+D+ +E H +S+ TGEG+++L N +K Sbjct: 307 DIWPDFIARLPAKLPITVVRNKADVTGETLGISEVNGHSLIRLSARTGEGVDDLRNHLKQ 366 Query: 361 ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSLGK 418 + + + +RHL L R+L+ A L G +++AE LRLA +L + Sbjct: 367 SMGFD-TSMEGGFLARRRHLQALEDAARHLDQGKAQLLGAWAG-ELLAEELRLAQQNLSE 424 Query: 419 ITGCVDVEQLLDIIF 433 ITG + LL IF Sbjct: 425 ITGEFTSDDLLGRIF 439 >gi|260576109|ref|ZP_05844102.1| small GTP-binding protein [Rhodobacter sp. SW2] gi|259021589|gb|EEW24892.1| small GTP-binding protein [Rhodobacter sp. SW2] Length = 428 Score = 249 bits (635), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 166/443 (37%), Positives = 248/443 (55%), Gaps = 24/443 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP--RKASLRYFFGLDGRILDK 63 +TI+A+++ + ++++RLSGP F + + P P R+ LR G LD+ Sbjct: 2 DTIYALASARGKAGVAVVRLSGPQAFAAVQALAG---PLPDLRRVGLRRLV-WQGVELDQ 57 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 L+++F SFTGE AE H+HG AVV+ +L L++ LRLA PGEF+RRA ENG + Sbjct: 58 ALVLLFGDGASFTGEAVAELHLHGSTAVVSAVLRALSEQNGLRLAMPGEFTRRALENGCL 117 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL + E LADLI +ETE QRR ++ +SG + + W L + +EA +DF+ +ED Sbjct: 118 DLAQIEGLADLIDAETESQRRQALRVLSGAVGKIAQGWRHDLIRAAALLEATIDFA-DED 176 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 V + EV + L + I ++ E IR+G+++ ILG N GKS+L N LA ++ Sbjct: 177 VPLDVTPEVCVLLDGLLAALRREIDGSRIAERIRDGFEVAILGAPNVGKSTLLNTLAGRE 236 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303 AI ++I GTTRDV+ + +DL G V + DTAG+RET D VE GI+R +ADL + Sbjct: 237 AAITSEIAGTTRDVIEVRMDLGGLPVTLLDTAGLRETLDQVEGIGIQRALARAADADLRV 296 Query: 304 LLKEINSKKEISFPKNI---DFIFIGTKSDLYSTYTEEYDHL-ISSFTGEGLEELINKIK 359 L E I P + D I +G K+D+ D L +S TGEG+ +L+ +I Sbjct: 297 FLLE----DGIDLPGIVPGPDDILVGGKADIRGG-----DGLRVSGKTGEGIADLVAEIT 347 Query: 360 SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDIIAENLRLASVSLG 417 L + L +I + +RH + +R +E A + +++ AE L A ++ Sbjct: 348 RRLVQR-SGLAGTI-TRERHRIAIEGAIRAMESARAEVGSALPRVELAAEALHQAIRAMD 405 Query: 418 KITGCVDVEQLLDIIFSKFCIGK 440 + G VDVE LLD IF+ FCIGK Sbjct: 406 SLVGRVDVENLLDEIFASFCIGK 428 >gi|183597177|ref|ZP_02958670.1| hypothetical protein PROSTU_00420 [Providencia stuartii ATCC 25827] gi|188023491|gb|EDU61531.1| hypothetical protein PROSTU_00420 [Providencia stuartii ATCC 25827] Length = 454 Score = 249 bits (635), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 167/463 (36%), Positives = 252/463 (54%), Gaps = 41/463 (8%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + I+R+SGP V + + K P PR A F +D +LD+G+ Sbjct: 5 DTIVAQATPPGRGGVGILRVSGPKAAVVAQTVLGKL-PKPRYADYLPFRDVDDTVLDQGI 63 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 I FP P SFTGED E HGG +++ +L + + +R+ANPGEFS RAF N K+DL Sbjct: 64 AIFFPGPNSFTGEDVLELQGHGGPVILDLLLRRILTIDGVRIANPGEFSERAFLNDKLDL 123 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E R +M + G S+ Q ++ LT +R ++EA +DF +EE + Sbjct: 124 AQAEAIADLIDASSEQAARSAMNSLQGAFSAQIHQMVEALTTLRIYVEAAIDFPDEE-ID 182 Query: 186 NFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 S ++ L+D++ D+ S+ + G ++R G K+VI G NAGKSSL NALA + Sbjct: 183 FLSDGKIEAKLDDVI---ADLERVRSEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGR 239 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 + AIVTDI GTTRDVL + ++G + + DTAG+RE D VE+ GI+R + E+E AD + Sbjct: 240 EAAIVTDIAGTTRDVLREHIHIDGMPLHVIDTAGLREASDEVERIGIERAWKEIEQADRV 299 Query: 303 LLL-----------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------ISS 345 L + +EI + P+ + I K+D E + + +S+ Sbjct: 300 LFMLDSTTTDATEPQEIWPEFMARLPETLPVTVIRNKADKTGEKIEFVEDVRYPLIRLSA 359 Query: 346 FTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHL-------YHLSQTVRYLEMASLNE 397 +G++ L + +K + N + F + +RHL HL+Q L +A E Sbjct: 360 REEKGIDLLRDHLKETMGFNSNTEGGFL--ARRRHLQALDAAAMHLAQGHEQLVVARSGE 417 Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++AE LRLA L +ITG + LL IFS FCIGK Sbjct: 418 ------LLAEELRLAQQELSEITGEFTSDDLLGRIFSSFCIGK 454 >gi|190171186|gb|ACE63663.1| ThdF [Enterobacter asburiae] Length = 439 Score = 249 bits (635), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 154/435 (35%), Positives = 239/435 (54%), Gaps = 23/435 (5%) Query: 18 SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77 + I+R+SG +V E + K P PR A F DG LD+G+ + FP P SFTG Sbjct: 9 GGVGILRISGLKAREVAEAVLGKL-PKPRYADYLPFKDTDGTPLDQGIALWFPGPNSFTG 67 Query: 78 EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137 ED E HGG +++ +L+ + +P LR+A PGEFS RAF N K+DL +AE++ADLI + Sbjct: 68 EDVLELQGHGGPVILDLLLKRILTLPGLRIAKPGEFSERAFLNDKLDLAQAEAIADLIDA 127 Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197 +E R ++ + G S+ ++ LTH+R ++EA +DF +EE + S ++ + Sbjct: 128 SSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE-IDFLSDGKIEAQLN 186 Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257 + ND+ + ++ + G ++R G K+VI G NAGKSSL NALA ++ AIVTDI GTTRDV Sbjct: 187 QVMNDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDV 246 Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS-- 315 L + ++G + I DTAG+R+ D VE+ GI+R + E+E AD +L + + + + Sbjct: 247 LREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPA 306 Query: 316 ---------FPKNIDFIFIGTKSDLYSTYTEEYD---H---LISSFTGEGLEELINKIKS 360 P + + K+D+ D H +S+ TGEG+++L N +K Sbjct: 307 EIWPDFIARLPAKLPITVVRNKADVTGETLGISDVNGHSLIRLSARTGEGVDDLRNHLKQ 366 Query: 361 ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSLGK 418 + + + +RHL L + +L A L G +++AE LRLA +L + Sbjct: 367 SMGFD-TSMEGGFLARRRHLQALEEAANHLVQGKAQLIGAWAG-ELLAEELRLAQQNLSE 424 Query: 419 ITGCVDVEQLLDIIF 433 ITG + LL IF Sbjct: 425 ITGEFTSDDLLGRIF 439 >gi|299752969|ref|XP_001832975.2| tRNA modification GTPase GTPBP3 [Coprinopsis cinerea okayama7#130] gi|298410084|gb|EAU88664.2| tRNA modification GTPase GTPBP3 [Coprinopsis cinerea okayama7#130] Length = 501 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 158/477 (33%), Positives = 255/477 (53%), Gaps = 44/477 (9%) Query: 2 NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK-----KKKPFPRK-ASLRYFFG 55 + ++ TI+A+ T + ++++R+SGP + + K + P P K R Sbjct: 31 DAQRSTIYALGTPPGKAGVAVVRVSGPDALETWRGMVKGSGGHETTPQPWKLKRCRIVHP 90 Query: 56 LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 +G +D GL + F P+SFT ED+ E H+H G AV+ L L+ P R A PGEF+R Sbjct: 91 QNGETIDDGLAVFFKGPKSFTAEDTVELHLHSGPAVIAAALAALSTFPTCRPAAPGEFTR 150 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG++DL + E L DLI + TE QR++++ G + + + ++ + +EA Sbjct: 151 RAFLNGRMDLTQVEGLKDLIDAGTESQRKIALRAAEGAIREKFDELRQRIISALAKVEAL 210 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +DF E E+++ ++ + + + + I +++ + GE++R+G ++ I G NAGKSSL Sbjct: 211 IDFGEGEEIEEGVYEDARSQVTEVVDIIKGYLNDHRRGELLRSGIRLAIFGPPNAGKSSL 270 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N LA+++ AIVT IPGTTRD+L + LD+ G V ++DTAG+R+TDD VE+ GI+R Sbjct: 271 LNILARREAAIVTPIPGTTRDILELALDIGGLPVIVADTAGLRKTDDTVEQIGIERARKA 330 Query: 296 VENADLIL----------LLKEINSKKEISFPKNIDFIFIGTKSDLYST----------- 334 V N+D+ + L ++ N+ KE+ P F+ K+DL Sbjct: 331 VANSDVSICVLSLPDLQNLTEDGNNWKELITPNT---YFLLNKADLMPAQWRPDSAVLRE 387 Query: 335 --YTEEYDHLISSFTGEGLEELINKIKSILSNKF-------KKLPFSIPSHKRHLYHLSQ 385 +E + S +G E ++ S L +F + I + +RH +L Sbjct: 388 LGVVQERMWVSSLAKRDGFEVFLSGFASALQKQFGMSDDLTEATQSPIITRQRHRENLEN 447 Query: 386 TVRYLEMASLNEKDCGLDII--AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 R+LE A D DI+ AE LR A+ ++GK+TG + VE +LD +F FCIGK Sbjct: 448 ATRFLESALAYGPD---DIVFAAEELRYAANAIGKVTGAIGVEDVLDAVFRDFCIGK 501 >gi|190171178|gb|ACE63659.1| ThdF [Citrobacter koseri] Length = 439 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 152/435 (34%), Positives = 241/435 (55%), Gaps = 23/435 (5%) Query: 18 SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77 + I+R+SG +V E + K P PR A F DG LD+G+ + FP P SFTG Sbjct: 9 GGVGILRISGLKAREVAEAVLGKL-PKPRYADYLPFKDADGTALDQGIALWFPGPNSFTG 67 Query: 78 EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137 ED E HGG +++ +L+ + +P LR+A PGEFS RAF N K+DL +AE++ADLI + Sbjct: 68 EDVLELQGHGGPVILDLLLKRILTLPGLRIARPGEFSERAFLNDKLDLAQAEAIADLIDA 127 Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197 +E R ++ + G S+ ++ LTH+R ++EA +DF +EE + S ++ + Sbjct: 128 SSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE-IDFLSDGKIEAQLN 186 Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257 + D+ + ++ + G ++R G K+VI G NAGKSSL NALA ++ AIVTDI GTTRDV Sbjct: 187 GVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDV 246 Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS-- 315 L + ++G + I DTAG+R+ D VE+ GI+R + E+E AD +L + + + + Sbjct: 247 LREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPA 306 Query: 316 ---------FPKNIDFIFIGTKSDLYSTY---TEEYDH---LISSFTGEGLEELINKIKS 360 P + + K+D+ +E H +S+ TGEG++ L N +K Sbjct: 307 EIWPDFIARLPAKLPITVVRNKADITGETLGISEVNGHSLVRLSARTGEGVDVLRNHLKQ 366 Query: 361 ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSLGK 418 + + + +RHL L++ ++L+ + L G +++AE LRLA +L + Sbjct: 367 SMGFD-TNMEGGFLARRRHLQALAEAAKHLQQGKSQLLGAWAG-ELLAEELRLAQQALSE 424 Query: 419 ITGCVDVEQLLDIIF 433 ITG + LL IF Sbjct: 425 ITGEFTSDDLLGRIF 439 >gi|169635754|emb|CAQ16331.1| t-RNA modification GTPase protein [Pseudomonas syringae] Length = 458 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 162/463 (34%), Positives = 249/463 (53%), Gaps = 28/463 (6%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+ ETI AV+T + I+R+SGP + +++ PR A F+G + + Sbjct: 1 MSVAAETIAAVATAQGRGGVGIVRISGP-LASIAAKAFSERELKPRYAHYGPFYGENREV 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG V++ +L+ ++ RLA PGEFS RAF N Sbjct: 60 LDEGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCIQL-GCRLARPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + + R ++ + G S ++L +R ++EA +DF E Sbjct: 119 DKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSQRVHNLTEQLIGLRIYVEAAIDFPE 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + + VL + ++ ++S+ + + G ++R+G +VI G NAGKSSL NALA Sbjct: 179 EE-IDFLADGHVLGMLDKVRQELSTVMREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVT+I GTTRDVL + ++G + + DTAG+R+TDD VEK G++R + AD Sbjct: 238 GREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTDDQVEKIGVQRALKAIGEAD 297 Query: 301 LILLLKEINSKKE-----------ISFPKNIDFIFIGTKSDLYSTYTE----EYDHLISS 345 +LL+ + + + P I K+DL + H+ S Sbjct: 298 RVLLVVDATAPEADDPFALWPEFLQQRPDPAKVTLIRNKADLTGEDIRLQVCDDGHVTIS 357 Query: 346 FT------GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNE 397 + G+GLE L + +K+ + + + S + +RHL L LE A L Sbjct: 358 LSARSTDAGDGLELLRDHLKACMGYE-QTSESSFSARRRHLEALRHASDALEHGRAQLTL 416 Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G +++AE+LR A SLG+ITG + LL IFS FCIGK Sbjct: 417 AGAG-ELLAEDLRQAQHSLGEITGAFSSDDLLGRIFSSFCIGK 458 >gi|300692994|ref|YP_003753989.1| GTPase involved in tRNA modification and in thiophene and furan oxidation [Ralstonia solanacearum PSI07] gi|299080054|emb|CBJ52729.2| GTPase involved in tRNA modification and in thiophene and furan oxidation [Ralstonia solanacearum PSI07] Length = 474 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 152/459 (33%), Positives = 243/459 (52%), Gaps = 29/459 (6%) Query: 8 IFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLI 67 I A++T I ++R+SGP V + +C + PR+A+ F DG +D+G+ + Sbjct: 19 IAAIATAPGRGGIGVVRVSGPDVRAVMQAVCGRLLQ-PRQATYLPFLDADGSAIDRGIAL 77 Query: 68 VFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN---LRLANPGEFSRRAFENGKID 124 FP+P S+TGED E HGG V+ +L + + LR+A PGEF+RRAF N K+D Sbjct: 78 WFPAPHSYTGEDVLELQGHGGPVVMQLLLSRCLQAGHGIGLRVAEPGEFTRRAFLNDKLD 137 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ADLI + TE R + + G S ++++ H+R +EA LDF EEE + Sbjct: 138 LAQAEAVADLIEASTEAAARSAARSLDGAFSQAVHALVERVIHLRMLVEATLDFPEEE-I 196 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + + + ++ + ++Q + G ++R G +V+ G N GKSSL NALA ++ Sbjct: 197 DFLEASDARGQLADIRARLDGVLAQARQGALLREGLHVVLAGQPNVGKSSLLNALAGAEL 256 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIVT I GTTRD + + +EG + I DTAG+R+T+D VE+ GI+RT+ + AD++L Sbjct: 257 AIVTPIAGTTRDKVQQTIQIEGIPLNIVDTAGLRDTEDEVERIGIERTWAAIARADVVLH 316 Query: 305 L---------------KEINSKKEISFPKNIDFIFIGTKSDLYSTY------TEEYDHLI 343 L I+++ P + + + K DL + + + Sbjct: 317 LLDAADYRAHGLCAEDAAIDARIAGHVPSGVPTLRVINKIDLTGLAVPGRVDAQPPEVWL 376 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LNEKDCG 401 S+ G G+E L + I + + + +RHL L +L + + +++ Sbjct: 377 SARDGSGIESLRAALLEIAGWQGGGEGLYL-ARERHLAALRAAKAHLAIGADHADQQAQS 435 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LD+ AE LRLA +L ITG + LL +IFS+FCIGK Sbjct: 436 LDLFAEELRLAQEALNSITGAFSSDDLLGVIFSRFCIGK 474 >gi|15600760|ref|NP_254254.1| tRNA modification GTPase TrmE [Pseudomonas aeruginosa PAO1] gi|107104668|ref|ZP_01368586.1| hypothetical protein PaerPA_01005747 [Pseudomonas aeruginosa PACS2] gi|218894669|ref|YP_002443539.1| tRNA modification GTPase TrmE [Pseudomonas aeruginosa LESB58] gi|14195275|sp|Q9HT07|MNME_PSEAE RecName: Full=tRNA modification GTPase mnmE gi|9951908|gb|AAG08952.1|AE004968_6 conserved hypothetical protein [Pseudomonas aeruginosa PAO1] gi|218774898|emb|CAW30717.1| putative GTPase for tRNA modification and thiophene and furan oxidation [Pseudomonas aeruginosa LESB58] Length = 455 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 164/461 (35%), Positives = 254/461 (55%), Gaps = 27/461 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M ETI A++T + I+R+SGP Q+ + ++ R A F G++ Sbjct: 1 MQAATETIVAIATAQGRGGVGIVRVSGPLAGQMAVAVSGRQLK-ARHAHYGPFLDAGGQV 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+GL + FP P SFTGED E HGG V++ +++ ++ R A PGEFS RAF N Sbjct: 60 IDEGLSLYFPGPNSFTGEDVLELQGHGGPVVLDLLVQRCLEL-GARQARPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + +E R ++ + GE S ++L +R ++EA +DF E Sbjct: 119 DKLDLAQAEAIADLIEASSEQAARNALRSLQGEFSRRVHALTEQLISLRIYVEAAIDFPE 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + + VL + ++ ++S+ + G ++R+G +VI G NAGKSSL NALA Sbjct: 179 EE-IDFLADGHVLGLLEKVRTELSTVQREASQGALLRDGMTVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + ++G + + DTAG+R+T+D VEK G++R + AD Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTEDHVEKIGVERALKAIGEAD 297 Query: 301 LILLLKEINSKKEIS----FPKNID-------FIFIGTKSDLYS---TYTEEYD-HL--- 342 +LL+ + + + +P+ +D I K+DL + E D H+ Sbjct: 298 RVLLVVDATAPEAADPFSLWPEFLDQRPEPGKVTLIRNKADLSTESIGLEESADGHVTIT 357 Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFS-IPSHKRHLYHLSQTVRYLE--MASLNEKD 399 +S+ TG GLE L +K+ + F++ S + +RHL L + LE + L Sbjct: 358 LSARTGAGLELLREHLKACMG--FEQTAESGFSARRRHLEALRLAGQALEHGHSQLIHNG 415 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G +++AE+LR A LG+ITG + LL IFS FCIGK Sbjct: 416 AG-ELLAEDLRQAQQHLGEITGAFTPDDLLGRIFSSFCIGK 455 >gi|190171172|gb|ACE63656.1| ThdF [Citrobacter sp. OD1158_06] Length = 439 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 153/434 (35%), Positives = 242/434 (55%), Gaps = 23/434 (5%) Query: 19 AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGE 78 + I+R+SG +V E + K P PR A F DG LD+G+ + FP P SFTGE Sbjct: 10 GVGILRISGLKAREVAETVLGKL-PKPRYADYLPFKDEDGSALDQGIALWFPGPNSFTGE 68 Query: 79 DSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSE 138 D E HGG +++ +L+ + +P LR+A PGEFS RAF N K+DL +AE++ADLI + Sbjct: 69 DVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDKLDLAQAEAIADLIDAS 128 Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILF 198 +E R ++ + G S+ ++ LTH+R ++EA +DF +EE + S ++ + Sbjct: 129 SEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE-IDFLSDGKIEAQLNS 187 Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 + +D+ + ++ + G ++R G K+VI G NAGKSSL NALA ++ AIVTDI GTTRDVL Sbjct: 188 VISDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVL 247 Query: 259 TIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS--- 315 + ++G + I DTAG+R+ D VE+ GI+R + E+E AD +L + + + + Sbjct: 248 REHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAD 307 Query: 316 --------FPKNIDFIFIGTKSDLYST---YTEEYDH---LISSFTGEGLEELINKIKSI 361 P + + K+D+ +E H +S+ TGEG++ L N +K Sbjct: 308 IWPDFIARLPAKLPITVVRNKADITGETLGLSEVNGHSLVRLSARTGEGVDVLRNHLKQS 367 Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSLGKI 419 + + + + +RHL L++ +LE + L G +++AE LRLA +L +I Sbjct: 368 MGFE-TNMEGGFLARRRHLQALAEAAEHLEQGKSQLLGAWAG-ELLAEELRLAQQNLSEI 425 Query: 420 TGCVDVEQLLDIIF 433 TG + LL IF Sbjct: 426 TGEFTSDDLLGRIF 439 >gi|134096615|ref|YP_001101690.1| tRNA modification GTPase TrmE [Herminiimonas arsenicoxydans] gi|205829158|sp|A4GAN2|MNME_HERAR RecName: Full=tRNA modification GTPase mnmE gi|133740518|emb|CAL63569.1| tRNA modification GTPase TrmE [Herminiimonas arsenicoxydans] Length = 466 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 168/469 (35%), Positives = 248/469 (52%), Gaps = 32/469 (6%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF---PRKASLRYFFGLD 57 M + I A++T I ++R+SG V +C K R A+ F D Sbjct: 1 MTFDSSPIAAIATAPGRGGIGVVRISGKDLSSVMRAVCGADKGSSLQARHATYLDFVNSD 60 Query: 58 GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEFS 114 G ++D+GL I F +P S+TGED E HGG V+ +L E LR+A PGEF+ Sbjct: 61 GSVIDQGLAIYFKAPHSYTGEDVLELQGHGGPVVLQMLLTRCLEAGADIGLRMAEPGEFT 120 Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174 RAF N K+DL +AE + DLI + TE + + + +SG S + +DK+T++R +EA Sbjct: 121 HRAFLNDKLDLAQAEGVIDLIEASTEAAAKSATQSLSGAFSKTIQELVDKITNLRMLVEA 180 Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234 LDF EEE + + + ++ + SQ G ++R+G IV+ G N GKSS Sbjct: 181 TLDFPEEE-IDFLEKSDARGQLTNIREALQRVFSQAAQGALLRDGLNIVLAGQPNVGKSS 239 Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKR 291 L NALA DVAIVT I GTTRD + + +EG V + DTAGIR+ D VE+ GI+R Sbjct: 240 LLNALAGSDVAIVTPIAGTTRDKVIETIQIEGIPVNVIDTAGIRDAADAGDEVERIGIER 299 Query: 292 TFLEVENADLILLLKEIN-----SKKEIS--FPKNIDFIFIGTKSDLYSTYTEEYD---- 340 T+ V+ AD+I+ + + + + ++I+ FP N+ + + K DL S + D Sbjct: 300 TWAAVQTADVIVHMLDASRGPTRADEQITERFPANVPVMRVWNKIDL-SGHRPAIDRMPD 358 Query: 341 --HLISSFTG-EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL-- 395 H+ S TG G++ L ++ ++ + + + +RHL L +LEMA+ Sbjct: 359 ATHIYLSATGLLGMDLLRTELLHLVGWQQTGESLYL-ARERHLVALKSAHSHLEMAAQHA 417 Query: 396 ---NEK-DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 NE D LD+ AE LRLA L ITG + LL +IFS+FCIGK Sbjct: 418 AHDNEATDPALDLFAEELRLAQERLSSITGEFTSDDLLGVIFSRFCIGK 466 >gi|103488330|ref|YP_617891.1| tRNA modification GTPase TrmE [Sphingopyxis alaskensis RB2256] gi|123379471|sp|Q1GP64|MNME_SPHAL RecName: Full=tRNA modification GTPase mnmE gi|98978407|gb|ABF54558.1| tRNA modification GTPase trmE [Sphingopyxis alaskensis RB2256] Length = 419 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 160/427 (37%), Positives = 244/427 (57%), Gaps = 17/427 (3%) Query: 23 IRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAE 82 +R+SG + + + + P PR+ASL DG LD L++ FP P + TGED AE Sbjct: 1 MRISGIDAAKALQALAGRL-PTPRRASLARLTDTDGGALDHALILWFPGPATATGEDLAE 59 Query: 83 FHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQ 142 H+HGG AVV + LA MP LR A GEF+RRAF NG+IDL EAE LADL+++ETE Q Sbjct: 60 LHLHGGRAVVAAVEAALAAMPGLRRAEAGEFTRRAFANGRIDLAEAEGLADLLAAETESQ 119 Query: 143 RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ--NFSSKEVLNDILFLK 200 R +++ SG +S W +L + + EA+L+F++E+DV+ ++ V + L Sbjct: 120 RVQALDHASGHVSRAVAGWQARLLALMAAAEAELNFADEDDVEVGEGVAQRVSEGMAALA 179 Query: 201 NDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260 ++ +++ E+I G +VI G NAGKS+L NALA++++AIV+ + GTTRDV+ Sbjct: 180 GELGEWLAR-PAAEVIAEGLSVVIAGPPNAGKSTLINALAQRELAIVSPVAGTTRDVIET 238 Query: 261 DLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319 L L+G ++ SDTAG+R E+ D +E GI R VE AD++L L + KE P++ Sbjct: 239 PLALDGIAMRFSDTAGLRGESADAIEMIGIDRAKAAVEGADILLWL---GAPKEA--PEH 293 Query: 320 IDFIFIGTKSDLY------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373 I I ++D + D ++S+ TGEG++ L I + + Sbjct: 294 PRTILIAAQADRWRGDAAAEAEAAHCDLILSAATGEGMDRLHTMIVEMARTLLPR-EGEA 352 Query: 374 PSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIF 433 +R L++ +LE+ + + + L ++AE LRLA +L +ITG VE +LD +F Sbjct: 353 TLRQRQRDALAEAKGWLEVETGSREAGDLILLAERLRLAGATLDRITGRGGVEDMLDTLF 412 Query: 434 SKFCIGK 440 +FCIGK Sbjct: 413 GRFCIGK 419 >gi|89074711|ref|ZP_01161169.1| tRNA modification GTPase [Photobacterium sp. SKA34] gi|89049475|gb|EAR55036.1| tRNA modification GTPase [Photobacterium sp. SKA34] Length = 455 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 164/458 (35%), Positives = 245/458 (53%), Gaps = 21/458 (4%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 MN +TI A +T + IIR+SGP +V + ++ R A F DG Sbjct: 1 MNQHIDTIVAQATPPGRGGVGIIRVSGPKAKEVALAVAGRELK-TRYAEYLPFKNEDGTA 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + F P SFTGED E HGG +++ ++ + K+ +R A PGEFS RAF N Sbjct: 60 LDQGIALFFKGPNSFTGEDVLELQGHGGPVLMDMMIRRILKIDGIRAARPGEFSERAFMN 119 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + +E + + + + G S+ + ++ L H+R F+EA +DF E Sbjct: 120 DKLDLAQAEAIADLIDASSEEAAKSAFKSLQGAFSTKVNELVEALIHLRIFVEAAIDFPE 179 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + S +V D+ + + +++ + G I+R G K+VI G NAGKSSL NAL+ Sbjct: 180 EE-IDFLSDGKVGGDLNGIIDRLNAVRKEANQGAIMREGMKVVIAGRPNAGKSSLLNALS 238 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 KD AIVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+ +AD Sbjct: 239 GKDSAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWDEIAHAD 298 Query: 301 LILLL-----KEINSKKEI------SFPKNIDFIFIGTKSDLYSTYT----EEYDHLI-- 343 +L + + KEI P ++ I K++L T LI Sbjct: 299 RVLFMVDGTTTDATDPKEIWPDFIERLPADMGLTVIRNKAELTGEQTGICHANNPTLIRL 358 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGL 402 S+ TG+G++ L +K + + +RHL L + +L + E Sbjct: 359 SARTGDGVDALREHLKQCMGFS-GTTEGGFMARRRHLDALERAAEHLAIGKEQLEGFMAG 417 Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +I+AE LRLA L +ITG + LL IF+ FCIGK Sbjct: 418 EILAEELRLAQQHLSEITGEFTSDDLLGRIFTSFCIGK 455 >gi|297276443|ref|XP_001114421.2| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial-like, partial [Macaca mulatta] Length = 330 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 129/288 (44%), Positives = 183/288 (63%), Gaps = 2/288 (0%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFF-GLDGRILDKG 64 TIFA+S+G I++IR SGPS + + P R ASLR G LD+ Sbjct: 35 TIFALSSGQGRCGIAVIRTSGPSSGHALRILTAARDLPPARHASLRLLSDPRSGEPLDRA 94 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 L++ FP P SFTGED EFHVHGG AVV+G+L+ L +P LR A GEF+RRAF NGK++ Sbjct: 95 LVLWFPGPRSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFANGKLN 154 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L E E LADLI +ETE QRR ++ + GEL L W + LT + +EA +DF E++++ Sbjct: 155 LTEVEGLADLIHAETEAQRRQALRQLDGELGHLCRGWAETLTKALAHVEAYIDFGEDDNL 214 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + ++ ++ L+ + +H+ + G+ +R+G +V+ G NAGKSSL N L++K V Sbjct: 215 EEGVLEQADIEVRALEVALGAHLRDARRGQRLRSGAHVVVTGPPNAGKSSLVNLLSRKPV 274 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292 +IV+ PGTTRDVL +DL G+ V +SDTAG+RE VE+EG++R Sbjct: 275 SIVSPEPGTTRDVLETPVDLAGFPVLLSDTAGLREGVGPVEQEGVRRA 322 >gi|21672311|ref|NP_660378.1| tRNA modification GTPase TrmE [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|2495118|sp|Q44633|MNME_BUCAP RecName: Full=tRNA modification GTPase mnmE gi|1369898|dbj|BAA12845.1| thiophene and furan oxidation protein [Buchnera aphidicola] gi|2827009|gb|AAC38101.1| tRNA methyltransferase [Buchnera aphidicola] gi|21622910|gb|AAM67589.1| thiophene and furan oxidation protein [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 456 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 177/461 (38%), Positives = 266/461 (57%), Gaps = 35/461 (7%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A T SA+ I+R+SG QV F K P PR A+ FF ++LD+G+ Sbjct: 5 DTIIAQVTCPGKSAVGILRVSGIHANQVA-FAVLGKIPKPRFATYSKFFDESKKVLDEGI 63 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNL--RLANPGEFSRRAFENGKI 123 + FP+P S TGED E HG +++ +++ + + N+ R+A PGEF +RAF NGKI Sbjct: 64 SLWFPAPFSLTGEDVLELQGHGNPFIMDLLIKRILCLKNIKIRIAQPGEFCQRAFLNGKI 123 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE- 182 DL++AE++ DLI+SETE R S+ + G S + I KL R+ IEA +DFSEE Sbjct: 124 DLIQAEAIDDLINSETESVVRASLNSLHGNFSFYIQKIIKKLIEFRTNIEASIDFSEENI 183 Query: 183 ----DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 ++ S+ E LND FLK I + +S+G L IR +IVI+G NAGKSSL N Sbjct: 184 DFDFNIFIMSNFEKLND-KFLK--IKNIVSEGSL---IREAKRIVIVGPPNAGKSSLLNV 237 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L+ +D AIVTD+PGTTRDVL ++++ G +I DTAG+RET+D +EK GI+R++ ++N Sbjct: 238 LSCRDRAIVTDLPGTTRDVLYENINIHGISCEIIDTAGLRETEDKIEKIGIQRSWEMIKN 297 Query: 299 ADLILLLK------EINSKKEISFPKNI------DFIFIGTKSDLYSTYT--EEYDHL-- 342 +D +L + E K I F K I + F+ K+DL + + ++L Sbjct: 298 SDHVLYVMDKTISLEDQKKTSIQFMKQISSYNIQEVTFVLNKNDLVEDFCGITKIENLLF 357 Query: 343 --ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE-KD 399 IS+ TG+G++ L + + +K ++ F + +RH++ + + L A N K Sbjct: 358 ISISALTGQGIDILKKHLSNRQKDKSQEGLF--IARRRHIHQIDLSYCELLKAQKNWLKY 415 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++++AE+L + + LG+ITG LL IFS FCIGK Sbjct: 416 KNIELLAESLNIINKLLGEITGEFTSSDLLKRIFSTFCIGK 456 >gi|83649688|ref|YP_438123.1| tRNA modification GTPase TrmE [Hahella chejuensis KCTC 2396] gi|123529917|sp|Q2S6M6|MNME_HAHCH RecName: Full=tRNA modification GTPase mnmE gi|83637731|gb|ABC33698.1| tRNA modification GTPase TrmE [Hahella chejuensis KCTC 2396] Length = 454 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 156/426 (36%), Positives = 238/426 (55%), Gaps = 41/426 (9%) Query: 43 PFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKM 102 P PR A FF +G LD G+ ++F +P SFTGED EF HGG V++ +++ + + Sbjct: 42 PKPRHAHYSPFFNEEGDTLDSGIALLFIAPNSFTGEDVVEFQGHGGPVVLDILVKRIVSL 101 Query: 103 PNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWI 162 RLA PGEFS RAF N K+DL++AE++ADLI + +E +M + G+ S I Sbjct: 102 -GARLARPGEFSERAFMNDKLDLVQAEAIADLIEATSEQAAHSAMRSLQGQFSKEIENLI 160 Query: 163 DKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI 222 + L +R ++EA +DF EEE + S +VLND+ L + S + K G ++R G + Sbjct: 161 ESLIQLRIYVEAAIDFPEEE-IDFLSDGKVLNDLDTLLSQTQSVFASAKQGALMREGMTV 219 Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282 VI G NAGKSSL NALA ++ AIVT+I GTTRDVL + ++G + I DTAG+R++DD Sbjct: 220 VIAGRPNAGKSSLLNALAGRESAIVTEIEGTTRDVLREHIHIDGMPLHIVDTAGLRDSDD 279 Query: 283 IVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL 342 +VEK GI+R + E++ AD IL L + E+S P+ I + Y+ E +DH+ Sbjct: 280 VVEKIGIERAWKEIDQADRILFLVDATQTNEVS-PERI-------WPEFYA-RIEHHDHI 330 Query: 343 --------------------------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376 +S+ G G++ L +K+ + + + Sbjct: 331 TVVRNKIDLSEEAQGIDLSLSHPVIRLSAKAGNGIDVLREHLKACVGFE-SHAEGGFMAR 389 Query: 377 KRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFS 434 +RHL L+ +++++A L + G +++AE+LR+A +L +ITG + LL IFS Sbjct: 390 RRHLEALTVAEKHIQLAKQQLLSANAG-ELVAEDLRVAQNALSEITGAFTSDDLLGRIFS 448 Query: 435 KFCIGK 440 FCIGK Sbjct: 449 SFCIGK 454 >gi|190348630|gb|EDK41117.2| hypothetical protein PGUG_05215 [Meyerozyma guilliermondii ATCC 6260] Length = 503 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 168/478 (35%), Positives = 257/478 (53%), Gaps = 52/478 (10%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK-KPFPRKASLRYFFG-LDGRILDKG 64 TI+A+ST +AI ++R+SG + + + KK+ +P PR A++R + G LD Sbjct: 34 TIYALSTKMGRAAIGVVRISGSQSRYIYKKLTKKESEPLPRVAAVRNLYSSRSGVQLDNA 93 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN------LRLANPGEFSRRAF 118 L + F +P ++TGED E H+HGG AVV +L+ + ++ +R A GEFSRRAF Sbjct: 94 LTLFFQAPHTYTGEDLLELHLHGGTAVVQSVLKAIEELHQPEKQIFIRYAENGEFSRRAF 153 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NGK DL+E E + ++I +ETE QR S+ M G S L+ W ++ + + +DF Sbjct: 154 INGKYDLMEIEGIREMIDAETESQRLASLASMDGSNSGLFRSWRQEIARNVALLTTVIDF 213 Query: 179 SEEEDVQNFSS--KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 E+ D++ S +V +I L++ I ++ + + +++ NG K+ +LG NAGKSSL Sbjct: 214 GEDHDIEEVSQLFGQVGANIHQLESSIREYLYRAERSQVLLNGIKLSLLGPPNAGKSSLL 273 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--ETDDIVEKEGIKRTFL 294 N LA K+ AIV++I GTTRD++ I LD+ GY + I DTAGIR E D +EKEGIKR Sbjct: 274 NCLASKNAAIVSEIAGTTRDIIDIPLDINGYKIIIGDTAGIRSLEDADTIEKEGIKRAKA 333 Query: 295 EVENADLILLLKEINS-----------KKEISFPKNIDFIFIGTKSDLYS-----TYTEE 338 +D++LL+ ++ K+ K I +F K DL + E+ Sbjct: 334 ASLTSDIVLLVLPVDKPVVDDSFLEHIKQLTQHKKRIIVVF--NKRDLSNETLNKNLLEK 391 Query: 339 YD----------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL-----YHL 383 Y H +S TGEG++ L + S N P + + R L H Sbjct: 392 YSRVFGIEKPLFHFVSCNTGEGIDSLAKSLVSEFQNVTTSDPIIVSTRTRDLLVNDVLHG 451 Query: 384 SQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITG-CVDVEQLLDIIFSKFCIGK 440 + +Y +++D L +E+LR + +GKITG V VE++L I+FS FCIGK Sbjct: 452 FKEFQYWR----DQEDVVL--ASESLRQSVEGIGKITGDAVGVEEILGIVFSSFCIGK 503 >gi|15604593|ref|NP_221111.1| tRNA modification GTPase TrmE [Rickettsia prowazekii str. Madrid E] gi|6647889|sp|Q9ZCI1|MNME_RICPR RecName: Full=tRNA modification GTPase mnmE gi|3861288|emb|CAA15187.1| POSSIBLE THIOPHENE AND FURAN OXIDATION PROTEIN THDF (thdF) [Rickettsia prowazekii] gi|292572404|gb|ADE30319.1| tRNA modification GTPase TrmE [Rickettsia prowazekii Rp22] Length = 445 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 158/451 (35%), Positives = 260/451 (57%), Gaps = 23/451 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL----DGRIL 61 ETIFA S+ + +++ R+SGP +V + + +K PR L Y+ + ++ Sbjct: 2 ETIFAQSSAFGKAGVAVFRISGPKSLEVLQLLTGRKDFKPR---LMYYQQIIVPETNELI 58 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121 D +++ F P SFTGED E H HG A+ ++ L + ++RLA GEF++RAF N Sbjct: 59 DNAMVVYFKLPNSFTGEDVVEIHTHGSKAISIMLINTLLNIADIRLAEAGEFTKRAFLNN 118 Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181 K DL AE +ADLI++ET MQ R ++ +G L LY +W ++L I S +EA +DF + Sbjct: 119 KFDLTAAEGIADLINAETIMQHRQAVRQANGGLKELYNKWRNQLLKIISLLEAYIDFP-D 177 Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 ED+ +V N + N+IS++++ + GE++ NG K+ I+G N GKSSL N L + Sbjct: 178 EDIPESILNDVNNTHKNIVNEISNYLNDNRRGELLNNGLKLAIIGPPNTGKSSLLNFLMQ 237 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENAD 300 +++AIV++I GTTRD++ LD+ GY + + DTAGIR E+ DI+E+EGIKR + A+ Sbjct: 238 RNIAIVSNIAGTTRDIIEGHLDIGGYPIILQDTAGIRTESTDIIEQEGIKRAINSAKTAN 297 Query: 301 LILLL---KEINS--KKEISFPKNIDFIFIGTKSDLY---STYTEE--YDHL-ISSFTGE 349 + +++ ++++S +I+ + + I I K DL T+ E Y L +S Sbjct: 298 IKIVMFDAEKLDSSINNDITGLIDENTIVIINKIDLIEPNKTFAIENRYKCLRVSVKNNI 357 Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENL 409 L ++ I++I N +++RH ++L Q + +L +L D L + E++ Sbjct: 358 ALSNILKNIENIAENLAGVTETPYITNQRHRHYLKQALSHLIDFNL---DNDLVLATEDI 414 Query: 410 RLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 R+ +G ITG ++VE++L+ IF FCIGK Sbjct: 415 RMTVRCIGLITGVINVEEILNEIFKNFCIGK 445 >gi|32034848|ref|ZP_00134954.1| COG0486: Predicted GTPase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208954|ref|YP_001054179.1| tRNA modification GTPase TrmE [Actinobacillus pleuropneumoniae L20] gi|166200465|sp|A3N2D8|MNME_ACTP2 RecName: Full=tRNA modification GTPase mnmE gi|126097746|gb|ABN74574.1| tRNA modification GTPase TrmE [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 452 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 163/458 (35%), Positives = 253/458 (55%), Gaps = 29/458 (6%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64 K+TI A +T + I+R+SGP +V + + K+ PR A+ F DG +LD+G Sbjct: 2 KDTIVAQATPIGRGGVGILRISGPLAQEVAKEVLGKELK-PRLANYLPFKDQDGTVLDQG 60 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 + + F +P SFTGED E HGG +++ +L+ + + +R+A GEFS +AF N K+D Sbjct: 61 IALFFKAPNSFTGEDVLELQGHGGQVILDILLKRILTIKGIRIARAGEFSEQAFLNDKLD 120 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ADLI + +E R +++ + GE S+ Q +D + ++R+++EA +DF +EE + Sbjct: 121 LAQAEAIADLIDATSEQAARSALKSLQGEFSNKINQLVDSVIYLRTYVEAAIDFPDEE-I 179 Query: 185 QNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 + ++ LND + N + QG I+R G K+VI G NAGKSSL NALA Sbjct: 180 DFLADGKIEGHLNDTIRQLNGVRKEAKQGA---ILREGMKVVIAGRPNAGKSSLLNALAG 236 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 ++ AIVT+I GTTRDVL + ++G + I DTAG+RE D VEK GI+R + E+E AD Sbjct: 237 REAAIVTNIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVEKIGIQRAWDEIEQADH 296 Query: 302 ILLLKEINSKKEISF-----------PKNIDFIFIGTKSDLYSTYT--EEYDHL----IS 344 +LL+ + + +F P++I I K DL +E D +S Sbjct: 297 VLLMIDSTEQTAEAFKTEWADFLAKLPQSIPVTVIRNKVDLSGEAEGLQELDGFTLIRLS 356 Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGL 402 + T G++ L +K + + + +RHL L +LE L + G Sbjct: 357 AQTKVGVDLLREHLKKSMGYQ-SSTEGGFLARRRHLQALETAAEHLERGHIQLTQFFAG- 414 Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LR+ +L +ITG + LL IFS FCIGK Sbjct: 415 ELLAEELRMVQNALSEITGQFTSDDLLGNIFSSFCIGK 452 >gi|90194066|gb|ABD92594.1| ThdF [Pasteurella multocida] Length = 436 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 161/443 (36%), Positives = 243/443 (54%), Gaps = 41/443 (9%) Query: 19 AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGE 78 I I+R+SGP +V + K P PR A F DG +LD+G+ + F +P SFTGE Sbjct: 7 GIGILRVSGPKAVEVAHAVLGKC-PKPRMADYLPFKDSDGNVLDQGIALYFKAPHSFTGE 65 Query: 79 DSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSE 138 D E HGG V++ +L+ + ++ LRLA PGEFS +AF N K+DL +AE++ADLI + Sbjct: 66 DVLELQGHGGQVVLDLLLKRILQLEGLRLARPGEFSEQAFLNDKLDLAQAEAIADLIDAS 125 Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LND 195 +E R +++ + GE S+ Q +D + ++R+++EA +DF +EE + + ++ LND Sbjct: 126 SEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEAAIDFPDEE-IDFLADGKIEAHLND 184 Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255 I+ + + S+ K G I+R G K+VI G NAGKSSL NALA ++ AIVTDI GTTR Sbjct: 185 IITQLDHVR---SEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTR 241 Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL----------- 304 DVL + ++G + I DTAG+RE D VE+ GI R + E+E AD ILL Sbjct: 242 DVLREHIHIDGMPLHIIDTAGLREATDEVERIGIVRAWSEIEQADRILLMLDSTEADNQD 301 Query: 305 LKEINSKKEISFPKNIDFIFIGTKSDL------------YSTYTEEYDHLISSFTGEGLE 352 L+++ S+ P NI + K+DL Y+ T +S+ T +G+ Sbjct: 302 LEKVRSEFLTKLPSNIPVTIVRNKADLSGENEGIVEQNGYTVIT------LSAKTQQGVA 355 Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLR 410 L +K + + + + +RHL L Q +L+ L + G +++AE LR Sbjct: 356 LLREHLKQSMGYQ-TNMEGGFLARRRHLEALEQAATHLQQGHVQLTQFYAG-ELLAEELR 413 Query: 411 LASVSLGKITGCVDVEQLLDIIF 433 L +ITG + LL IF Sbjct: 414 RVQNHLSEITGQFTSDDLLGNIF 436 >gi|90194136|gb|ABD92629.1| ThdF [Pasteurella multocida subsp. gallicida] Length = 436 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 161/443 (36%), Positives = 243/443 (54%), Gaps = 41/443 (9%) Query: 19 AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGE 78 I I+R+SGP +V + K P PR A F DG +LD+G+ + F +P SFTGE Sbjct: 7 GIGILRVSGPKAVEVAHAVLGKC-PKPRMADYLPFKDSDGNVLDQGIALYFKAPHSFTGE 65 Query: 79 DSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSE 138 D E HGG V++ +L+ + ++ LRLA PGEFS +AF N K+DL +AE++ADLI + Sbjct: 66 DVLELQGHGGQVVLDLLLKRILQLEGLRLARPGEFSEQAFLNDKLDLAQAEAIADLIDAS 125 Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LND 195 +E R +++ + GE S+ Q +D + ++R+++EA +DF +EE + + ++ LND Sbjct: 126 SEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEAAIDFPDEE-IDFLADGKIEAHLND 184 Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255 I+ + + S+ K G I+R G K+VI G NAGKSSL NALA ++ AIVTDI GTTR Sbjct: 185 IITQLDHVR---SEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTR 241 Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL----------- 304 DVL + ++G + I DTAG+RE D VE+ GI R + E+E AD ILL Sbjct: 242 DVLREHIHIDGMPLHIIDTAGLREATDEVERIGIVRAWSEIEQADRILLMLDSTEADNQD 301 Query: 305 LKEINSKKEISFPKNIDFIFIGTKSDL------------YSTYTEEYDHLISSFTGEGLE 352 L+++ S+ P NI + K+DL Y+ T +S+ T +G+ Sbjct: 302 LEKVRSEFLTKLPSNIPVTVVRNKADLSGENEGIVEQNGYTVIT------LSAKTQQGVA 355 Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLR 410 L +K + + + + +RHL L Q +L+ L + G +++AE LR Sbjct: 356 LLREHLKQSMGYQ-TNMEGGFLARRRHLEALEQAATHLQQGHVQLTQFYAG-ELLAEELR 413 Query: 411 LASVSLGKITGCVDVEQLLDIIF 433 L +ITG + LL IF Sbjct: 414 RVQNHLSEITGQFTSDDLLGNIF 436 >gi|146412448|ref|XP_001482195.1| hypothetical protein PGUG_05215 [Meyerozyma guilliermondii ATCC 6260] Length = 503 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 168/478 (35%), Positives = 257/478 (53%), Gaps = 52/478 (10%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK-KPFPRKASLRYFFG-LDGRILDKG 64 TI+A+ST +AI ++R+SG + + + KK+ +P PR A++R + G LD Sbjct: 34 TIYALSTKMGRAAIGVVRISGSQSRYIYKKLTKKESEPLPRVAAVRNLYSSRSGVQLDNA 93 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN------LRLANPGEFSRRAF 118 L + F +P ++TGED E H+HGG AVV +L+ + ++ +R A GEFSRRAF Sbjct: 94 LTLFFQAPHTYTGEDLLELHLHGGTAVVQSVLKAIEELHQPEKQIFIRYAENGEFSRRAF 153 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NGK DL+E E + ++I +ETE QR S+ M G S L+ W ++ + + +DF Sbjct: 154 INGKYDLMEIEGIREMIDAETESQRLASLASMDGSNSGLFRSWRQEIARNVALLTTVIDF 213 Query: 179 SEEEDVQNFSS--KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 E+ D++ S +V +I L++ I ++ + + +++ NG K+ +LG NAGKSSL Sbjct: 214 GEDHDIEEVSQLFGQVGANIHQLESSIREYLYRAERSQVLLNGIKLSLLGPPNAGKSSLL 273 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--ETDDIVEKEGIKRTFL 294 N LA K+ AIV++I GTTRD++ I LD+ GY + I DTAGIR E D +EKEGIKR Sbjct: 274 NCLASKNAAIVSEIAGTTRDIIDIPLDINGYKIIIGDTAGIRSLEDADTIEKEGIKRAKA 333 Query: 295 EVENADLILLLKEINS-----------KKEISFPKNIDFIFIGTKSDLYS-----TYTEE 338 +D++LL+ ++ K+ K I +F K DL + E+ Sbjct: 334 ASLTSDIVLLVLPVDKPVVDDSFLEHIKQLTQHKKRIIVVF--NKRDLSNETLNKNLLEK 391 Query: 339 YD----------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL-----YHL 383 Y H +S TGEG++ L + S N P + + R L H Sbjct: 392 YSRVFGIEKPLFHFVSCNTGEGIDSLAKSLVSEFQNVTTSDPIIVSTRTRDLLVNDVLHG 451 Query: 384 SQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITG-CVDVEQLLDIIFSKFCIGK 440 + +Y +++D L +E+LR + +GKITG V VE++L I+FS FCIGK Sbjct: 452 FKEFQYWR----DQEDVVL--ASESLRQSVEGIGKITGDAVGVEEILGIVFSSFCIGK 503 >gi|328950860|ref|YP_004368195.1| tRNA modification GTPase mnmE [Marinithermus hydrothermalis DSM 14884] gi|328451184|gb|AEB12085.1| tRNA modification GTPase mnmE [Marinithermus hydrothermalis DSM 14884] Length = 437 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 157/444 (35%), Positives = 249/444 (56%), Gaps = 23/444 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DGRI 60 +TI A++T AI ++RLSGP +V + + P R+ +G G + Sbjct: 8 DTIAAIATPPGKGAIGVVRLSGPQALEVAARLWRGADPRTLPGG-RFSYGRVVDPETGEV 66 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+GLL+VF +P S+TG+D+ EF VHG AV+ +LE + R ANPGE++ RA+ N Sbjct: 67 LDEGLLLVFRAPRSYTGQDAVEFQVHGSPAVLRRVLEACLQA-GARPANPGEYTLRAYLN 125 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G++DL +AE++ LI +E++ RR ++ G+S LS+ +L + + I+A LD+ E Sbjct: 126 GRMDLAQAEAVLALIEAESDAARRQALRGLSRALSTKIEALAQRLLDLLAHIQALLDYPE 185 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E V+ ++ V+ +L +I ++ G + +G +I ++G NAGKSSL NAL Sbjct: 186 E-GVEPHEAERVIAQVL---AEIERLLATTAAGRVAAHGARITLVGAPNAGKSSLLNALL 241 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 D AIVTDIPGTTRD L L++ G V DTAG+RET+D VE+ G++R AD Sbjct: 242 GYDRAIVTDIPGTTRDYLEAPLEIGGVPVIAVDTAGVRETEDAVERAGVERALELAREAD 301 Query: 301 LILLLKEINSKKEISFPKNIDF---IFIGTKSDLYSTYTEEYDHL-ISSFTGEGLEELIN 356 LIL L + K P + + + + TK+DL + + E+ ++L +SS TG GLE L Sbjct: 302 LILFLADRTQPK--PTPPELPWERTLKVATKADLPALW-EDPEYLSVSSKTGAGLEALRR 358 Query: 357 KIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSL 416 I++ L + I +++RH L + +L L + D++ +L+ A +L Sbjct: 359 AIRTRLLGGLSEGEVWI-ANERHAEALREARAHL----LEARHAPEDLMGLSLQAAVEAL 413 Query: 417 GKITGCVDVEQLLDIIFSKFCIGK 440 +I G E+++D +F FC+GK Sbjct: 414 NRILGKDVPEEVVDRVFRNFCVGK 437 >gi|190171176|gb|ACE63658.1| ThdF [Citrobacter koseri] Length = 439 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 152/435 (34%), Positives = 240/435 (55%), Gaps = 23/435 (5%) Query: 18 SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77 + I+R+SG +V E + K P PR A F DG LD+G+ + FP P SFTG Sbjct: 9 GGVGILRISGLKAREVAEAVLGKL-PKPRYADYLPFKDADGTALDQGIALWFPGPNSFTG 67 Query: 78 EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137 ED E HGG +++ +L+ + +P LR+A PGEFS RAF N K+DL +AE++ADLI + Sbjct: 68 EDVLELQGHGGPVILDLLLKRILTLPGLRIARPGEFSERAFLNDKLDLAQAEAIADLIDA 127 Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197 +E R ++ + G S+ ++ LTH+R ++EA +DF +EE + S ++ + Sbjct: 128 SSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE-IDFLSDGKIEAQLN 186 Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257 + D+ + ++ + G ++R G K+VI G NAGKSSL NALA ++ AIVTDI GTTRDV Sbjct: 187 GVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDV 246 Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS-- 315 L + ++G + I DTAG+R+ D VE+ GI+R + E+E AD +L + + + + Sbjct: 247 LREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPA 306 Query: 316 ---------FPKNIDFIFIGTKSDLYSTY---TEEYDH---LISSFTGEGLEELINKIKS 360 P + + K+D+ +E H +S+ TGEG++ L N +K Sbjct: 307 EIWPDFIARLPAKLPITVVRNKADITGETLGISEVNGHSLVRLSARTGEGVDVLRNHLKQ 366 Query: 361 ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSLGK 418 + + + +RHL L++ +L+ + L G +++AE LRLA +L + Sbjct: 367 SMGFD-TNMEGGFLARRRHLQALAEAAEHLQQGKSQLLGAWAG-ELLAEELRLAQQALSE 424 Query: 419 ITGCVDVEQLLDIIF 433 ITG + LL IF Sbjct: 425 ITGEFTSDDLLGRIF 439 >gi|33151312|ref|NP_872665.1| tRNA modification GTPase TrmE [Haemophilus ducreyi 35000HP] gi|46577376|sp|Q7U344|MNME_HAEDU RecName: Full=tRNA modification GTPase mnmE gi|33147532|gb|AAP95054.1| tRNA modification GTPase TrmE [Haemophilus ducreyi 35000HP] Length = 452 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 167/459 (36%), Positives = 253/459 (55%), Gaps = 31/459 (6%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64 KETI A +T + I+R+SGP QV + I K PR A F DG ILD+G Sbjct: 2 KETIVAQATPIGRGGVGILRVSGPLAQQVAQEILGKTLT-PRLAHYLPFKDNDGEILDQG 60 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 + + F +P SFTGED E HGG +++ +L+ + + +R+A GEFS +AF N K+D Sbjct: 61 IALFFKAPNSFTGEDVLELQGHGGQVILDLLLKRILTINGIRIARTGEFSEQAFLNDKLD 120 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ADLI + +E R +++ + GE S+ Q +D++ ++R+++EA +DF +EE + Sbjct: 121 LAQAEAIADLIDATSEQAARSALKSLQGEFSNKINQLVDQVIYLRTYVEAAIDFPDEE-I 179 Query: 185 QNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 + ++ LNDI+ + +++ + K G I+R G K VI G NAGKSSL NALA Sbjct: 180 DFLADGKIERHLNDII---HQLAAVRQEAKQGSILREGMKAVIAGRPNAGKSSLLNALAG 236 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 ++ AIVT+I GTTRDVL + L+G + I DTAG+RE D VEK GI+R + E+ AD Sbjct: 237 REAAIVTNIAGTTRDVLHEHIHLDGMPLHIIDTAGLREASDEVEKIGIQRAWNEIVAADH 296 Query: 302 ILLLKEINSKKEISF-----------PKNIDFIFIGTKSDLYSTYTEEYDHL-------I 343 +LL+ + + +F P + I K DL S E L + Sbjct: 297 VLLMLDSTEQSAYAFKTEWAEFLAKLPPKMPITIIRNKVDL-SGEVEGLTQLDGFTLIRL 355 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCG 401 S+ T G++ L +K+ + + + +RHL L ++L L + G Sbjct: 356 SAQTKIGVDVLREHLKTSMGYQ-SSTEGGFLARRRHLQALETAAKHLTQGHIQLTQFFAG 414 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LRL +L +ITG + LL IFS FCIGK Sbjct: 415 -ELLAEELRLVQNTLSEITGQFTSDDLLGNIFSSFCIGK 452 >gi|89092260|ref|ZP_01165214.1| GTP-binding protein in thiophene and furan oxidation [Oceanospirillum sp. MED92] gi|89083348|gb|EAR62566.1| GTP-binding protein in thiophene and furan oxidation [Oceanospirillum sp. MED92] Length = 455 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 162/454 (35%), Positives = 247/454 (54%), Gaps = 24/454 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + I+R+SGP + + K + PR A FF + + +D+G+ Sbjct: 7 DTITAQATPPGRGGVGIVRVSGPLAKAISTQVLKTELK-PRYAYYGPFFDSNDQEIDQGI 65 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + FP P SFTGED E HGG +V+ IL + ++ RLANPGEFS RAF N K+DL Sbjct: 66 ALYFPGPNSFTGEDVLELQGHGGPVIVDLILNRVKEL-GARLANPGEFSERAFLNDKLDL 124 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI S +E R ++ + GE S + ++ L ++R ++EA +DF EEE + Sbjct: 125 AQAEAIADLIDSSSEQAARCAIRSLQGEFSKRIHELVEALINLRIYVEAAIDFPEEE-ID 183 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 + +VL+D+ + + + ++ K G ++R G +VI G NAGKSSL NALA ++ A Sbjct: 184 FLADGKVLSDLKSVLGKVEAVQAEAKQGSLLREGMSVVIAGRPNAGKSSLLNALAGRETA 243 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTDI GTTRDVL + ++G + I DTAG+R+ D VE+ GI R + E+ AD +LL+ Sbjct: 244 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAPDEVERIGINRAWEEIRKADRVLLM 303 Query: 306 KEINSKKE-----------ISFPKNIDFIFIGTKSDLYST---YTEEYDHLISSFTGE-- 349 + S + P++ I K+DL E +DH + + + Sbjct: 304 VDSQSTQTDDPEQIWPEFVHQLPESSRITVIRNKADLSGETIGQREAHDHTTITLSAKEQ 363 Query: 350 -GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDIIA 406 G++ L N +K + + +RHL L + L+ + L G +++A Sbjct: 364 SGVDLLRNHLKETMGFS-STTEGGFMARRRHLDALERAHELLQTGLDQLEYNGAG-ELLA 421 Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E+LR A SL +ITG + LL IFS FCIGK Sbjct: 422 EDLRQAQNSLNEITGEFTPDDLLGRIFSSFCIGK 455 >gi|190171174|gb|ACE63657.1| ThdF [Citrobacter koseri] Length = 439 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 152/435 (34%), Positives = 240/435 (55%), Gaps = 23/435 (5%) Query: 18 SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77 + I+R+SG +V E + K P PR A F DG LD+G+ + FP P SFTG Sbjct: 9 GGVGILRISGLKAREVAEAVLGKL-PKPRYADYLPFKDADGTALDQGIALWFPGPNSFTG 67 Query: 78 EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137 ED E HGG +++ +L+ + +P LR+A PGEFS RAF N K+DL +AE++ADLI + Sbjct: 68 EDVLELQGHGGPVILDLLLKRILTLPGLRIARPGEFSERAFLNDKLDLAQAEAIADLIDA 127 Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197 +E R ++ + G S+ ++ LTH+R ++EA +DF +EE + S ++ + Sbjct: 128 SSEQAARSALNSLQGAFSARVNNLVEALTHLRIYVEAAIDFPDEE-IDFLSDGKIEAQLN 186 Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257 + D+ + ++ + G ++R G K+VI G NAGKSSL NALA ++ AIVTDI GTTRDV Sbjct: 187 GVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDV 246 Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS-- 315 L + ++G + I DTAG+R+ D VE+ GI+R + E+E AD +L + + + + Sbjct: 247 LREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPA 306 Query: 316 ---------FPKNIDFIFIGTKSDLYSTY---TEEYDH---LISSFTGEGLEELINKIKS 360 P + + K+D+ +E H +S+ TGEG++ L N +K Sbjct: 307 EIWPDFIARLPAKLPITVVRNKADITGETLGISEVNGHSLVRLSARTGEGVDVLRNHLKQ 366 Query: 361 ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSLGK 418 + + + +RHL L++ +L+ + L G +++AE LRLA +L + Sbjct: 367 SMGFD-TNMEGGFLARRRHLQALAEAAEHLQQGKSQLLGAWAG-ELLAEELRLAQQALSE 424 Query: 419 ITGCVDVEQLLDIIF 433 ITG + LL IF Sbjct: 425 ITGEFTSDDLLGRIF 439 >gi|190171180|gb|ACE63660.1| ThdF [Enterobacter aerogenes] Length = 439 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 155/438 (35%), Positives = 241/438 (55%), Gaps = 29/438 (6%) Query: 18 SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77 + I+R+SG V + + K P PR A F DG LD+G+ + FP P SFTG Sbjct: 9 GGVGILRISGLKARDVAQAVLGKL-PKPRYADYLPFKDADGTPLDQGIALWFPGPNSFTG 67 Query: 78 EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137 ED E HGG +++ +L+ + +P +R+ANPGEFS RAF N K+DL +AE++ADLI + Sbjct: 68 EDVLELQGHGGPVILDLLLKRILTLPGVRIANPGEFSERAFLNDKLDLAQAEAIADLIDA 127 Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LN 194 +E R ++ + G S+ ++ LTH+R ++EA +DF +EE + S ++ LN Sbjct: 128 SSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE-IDFLSDGKIEAQLN 186 Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254 D++ D+ + ++ + G ++R G K+VI G NAGKSSL NALA ++ AIVTDI GTT Sbjct: 187 DVI---ADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTT 243 Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314 RDVL + ++G + I DTAG+R+ D VE+ GI+R + E+E AD +L + + + + Sbjct: 244 RDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGTTTSAV 303 Query: 315 S-----------FPKNIDFIFIGTKSDLYST---YTEEYDH---LISSFTGEGLEELINK 357 P + + K+D+ +E H +S+ TGEG+E L N Sbjct: 304 DPAEIWPDFIERLPAKLPITVVRNKADVTGEALGLSEVNGHSLIRLSARTGEGVEVLRNH 363 Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVS 415 +K + + + +RHL L +L+ A L G +++AE LRL+ + Sbjct: 364 LKQSMGFD-TNMEGGFLARRRHLQALETAADHLQQGKAQLLGAWAG-ELLAEELRLSQQA 421 Query: 416 LGKITGCVDVEQLLDIIF 433 L +ITG + LL IF Sbjct: 422 LSEITGEFTSDDLLGRIF 439 >gi|52673270|emb|CAH56508.1| putative tRNA modification GTPase trmE [Bacillus amyloliquefaciens FZB42] Length = 462 Score = 247 bits (631), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 164/462 (35%), Positives = 263/462 (56%), Gaps = 31/462 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK--KKKPFPRKASLRYFFG-----LDG 58 +TI A+ST AI+I+RLSGP ++ + + K K K S +G G Sbjct: 5 DTIAAISTPMGEGAIAIVRLSGPEAVKIADKMYKGPKGKTLSSAESHTIHYGHIADSTTG 64 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 RI+++ ++ V +P +FT ED E + HGGI VN +L+ LA RLA PGEF++RAF Sbjct: 65 RIIEEVMVSVLRAPRTFTREDVIEINCHGGIVTVNQVLQ-LALREGARLAEPGEFTKRAF 123 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG+IDL +AE++ DLI ++T+ ++M M G LS+L + D+L + +E ++D+ Sbjct: 124 LNGRIDLSQAEAVMDLIRAKTDRAMNVAMNQMEGRLSALVRRLRDELLETLAHVEVNIDY 183 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E +DV+ + + ++ +K +I + + + G+I+R G VI+G N GKSSL N+ Sbjct: 184 PEYDDVEEMTHQLLVEKASGVKKEIEALLRTSEQGKILREGLSTVIIGRPNVGKSSLLNS 243 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L + AIVTDIPGTTRDV+ +++ G +++ DTAGIRET+DIVE+ G++R+ ++ Sbjct: 244 LVHETKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDIVERIGVERSRQVLKE 303 Query: 299 ADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTY-TEEYDHL------- 342 ADLILL+ +N +E+S + +D I I K+DL + E L Sbjct: 304 ADLILLV--LNHSEELSEEDVKLFEAVEGMDVIVIMNKTDLEAKIDAERVKELAKGRPVV 361 Query: 343 -ISSFTGEGLEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN--EK 398 S EG+++L I+S+ + + + S+ RH+ L Q + ++ A LN E+ Sbjct: 362 TTSLLKEEGIQDLEEAIQSLFYTGAIESGDLTYVSNTRHISILHQAKQAIDDA-LNGIEQ 420 Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D +D++ +L LG+I G E L+D +FS+FC+GK Sbjct: 421 DVPIDMVQIDLTRCWELLGEIIGDAVHESLIDQLFSQFCLGK 462 >gi|154688207|ref|YP_001423368.1| tRNA modification GTPase TrmE [Bacillus amyloliquefaciens FZB42] gi|308175809|ref|YP_003922514.1| tRNA modification GTPase TrmE [Bacillus amyloliquefaciens DSM 7] gi|205829057|sp|A7ZAW1|MNME_BACA2 RecName: Full=tRNA modification GTPase mnmE gi|154354058|gb|ABS76137.1| TrmE [Bacillus amyloliquefaciens FZB42] gi|307608673|emb|CBI45044.1| tRNA modification GTPase TrmE [Bacillus amyloliquefaciens DSM 7] gi|328555785|gb|AEB26277.1| tRNA modification GTPase TrmE [Bacillus amyloliquefaciens TA208] gi|328914174|gb|AEB65770.1| tRNA modification GTPase mnmE [Bacillus amyloliquefaciens LL3] Length = 459 Score = 247 bits (631), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 164/462 (35%), Positives = 263/462 (56%), Gaps = 31/462 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK--KKKPFPRKASLRYFFG-----LDG 58 +TI A+ST AI+I+RLSGP ++ + + K K K S +G G Sbjct: 2 DTIAAISTPMGEGAIAIVRLSGPEAVKIADKMYKGPKGKTLSSAESHTIHYGHIADSTTG 61 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 RI+++ ++ V +P +FT ED E + HGGI VN +L+ LA RLA PGEF++RAF Sbjct: 62 RIIEEVMVSVLRAPRTFTREDVIEINCHGGIVTVNQVLQ-LALREGARLAEPGEFTKRAF 120 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG+IDL +AE++ DLI ++T+ ++M M G LS+L + D+L + +E ++D+ Sbjct: 121 LNGRIDLSQAEAVMDLIRAKTDRAMNVAMNQMEGRLSALVRRLRDELLETLAHVEVNIDY 180 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E +DV+ + + ++ +K +I + + + G+I+R G VI+G N GKSSL N+ Sbjct: 181 PEYDDVEEMTHQLLVEKASGVKKEIEALLRTSEQGKILREGLSTVIIGRPNVGKSSLLNS 240 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L + AIVTDIPGTTRDV+ +++ G +++ DTAGIRET+DIVE+ G++R+ ++ Sbjct: 241 LVHETKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDIVERIGVERSRQVLKE 300 Query: 299 ADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTY-TEEYDHL------- 342 ADLILL+ +N +E+S + +D I I K+DL + E L Sbjct: 301 ADLILLV--LNHSEELSEEDVKLFEAVEGMDVIVIMNKTDLEAKIDAERVKELAKGRPVV 358 Query: 343 -ISSFTGEGLEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN--EK 398 S EG+++L I+S+ + + + S+ RH+ L Q + ++ A LN E+ Sbjct: 359 TTSLLKEEGIQDLEEAIQSLFYTGAIESGDLTYVSNTRHISILHQAKQAIDDA-LNGIEQ 417 Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D +D++ +L LG+I G E L+D +FS+FC+GK Sbjct: 418 DVPIDMVQIDLTRCWELLGEIIGDAVHESLIDQLFSQFCLGK 459 >gi|118444248|ref|YP_876979.1| tRNA modification GTPase TrmE [Clostridium novyi NT] gi|166200476|sp|A0PX77|MNME_CLONN RecName: Full=tRNA modification GTPase mnmE gi|118134704|gb|ABK61748.1| tRNA modification GTPase TrmE [Clostridium novyi NT] Length = 459 Score = 247 bits (631), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 177/463 (38%), Positives = 265/463 (57%), Gaps = 30/463 (6%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFP--RKASLRYFFGLDG 58 E +TI A++T S +SIIR+SG + F K + R S+RY F +D Sbjct: 2 KEFDTIAAIATNLGESGVSIIRVSGDKALSIVSSIFTGKNDRKLDDIRTYSMRYGFIIDK 61 Query: 59 RI---LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 LD+ ++ P SFT ED E + HGG+ V ILEE+ RLA+PGEF++ Sbjct: 62 DTKEKLDEVIVSYMKGPRSFTAEDVVEINCHGGVVVTKRILEEVV-AAGARLASPGEFTK 120 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG+IDL +AE++ DLI+++TE+ + ++E G+LS G+ +KL I + IEA Sbjct: 121 RAFLNGRIDLSQAEAVIDLINAKTELSAKSALEQSEGKLSREIGKIRNKLLEIIASIEAT 180 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +D+ E+ D++ +S++ + L ++I S + G+I+R G VI+G N GKSSL Sbjct: 181 VDYPED-DLEEVTSEKGRESVSKLLDEIDSLLDHADEGKILREGLNTVIVGKPNVGKSSL 239 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 NAL + AIVTD+PGTTRDV+ + ++G +KI DTAGIR+TDD+VEK G++++ + Sbjct: 240 LNALLMETRAIVTDVPGTTRDVIEEYMSIDGIPIKIIDTAGIRDTDDVVEKIGVEKSREK 299 Query: 296 VENADLILLLKEINS-------KKEISFPKNIDFIFIGTKSDLYSTYTEE--------YD 340 + N+DL +L+ + NS K+ I+F K+ +I + K DL S +E Y Sbjct: 300 INNSDLTVLVLD-NSRGLDDEDKEIINFIKDKKYIVLLNKMDLESKIDKEALKELNSKYI 358 Query: 341 HLISSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399 IS+ TG GL++ IK + S K I ++ RH L + LE AS N D Sbjct: 359 IEISAKTGSGLDKFKEVIKELFFSGKVASKDVMI-TNTRHKEALIRAKESLE-ASKNALD 416 Query: 400 C--GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D+ + +LR A SLG+I G E ++D IFSKFC+GK Sbjct: 417 NTFAIDLASIDLRNAWKSLGEINGDTVEEDIIDKIFSKFCLGK 459 >gi|295697832|ref|YP_003591070.1| tRNA modification GTPase TrmE [Bacillus tusciae DSM 2912] gi|295413434|gb|ADG07926.1| tRNA modification GTPase TrmE [Bacillus tusciae DSM 2912] Length = 461 Score = 247 bits (630), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 156/458 (34%), Positives = 255/458 (55%), Gaps = 24/458 (5%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DGR 59 ++ I AV T + I++IR+SGP C +V E I + ++ S R +G Sbjct: 6 EDVIAAVGTAPGEAGIAVIRVSGPGCARVVERIFRGRQSLQDAPSHRMVYGAVVDPDTAE 65 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 +LD+ L + +P S+TGED E H HGG AVV +L + + R A PGEF++RAF Sbjct: 66 VLDEVLAVRMQAPRSYTGEDVVEIHTHGGSAVVGRVLNAVVR-AGARPAEPGEFTKRAFL 124 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NG++DL +AE++ DLI S+T+ RRL++E + G LS+ Q + L + + IE +D+ Sbjct: 125 NGRLDLSQAEAVIDLIRSKTDAARRLALEQLKGGLSTRVKQMREILLDVMAQIEVTIDYP 184 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 E DV++ + +++ + ++ I ++ ++G ++R G + I+G N GKSSL NAL Sbjct: 185 EH-DVEDVTIEQIREAVDQVREQIDELLASSRVGRLVREGVRTAIVGRPNVGKSSLLNAL 243 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 A ++ AIVT IPGTTRDV+ + + G +I DTAGIR T+D VE+ G++R+ V A Sbjct: 244 AGRERAIVTAIPGTTRDVVDEWIHVRGVAFQILDTAGIRTTEDEVERIGVERSLKWVAEA 303 Query: 300 DLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEE------YDH---LIS 344 DL+L + + +S E + K+ F+ + K DL + H +S Sbjct: 304 DLVLCVLDGSSPLEKEDLELLDRIKDRPFLVVVNKIDLPGRLAGDGRLEKLPQHRMVRVS 363 Query: 345 SFTGEGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGL 402 + TG+G++EL +++ + +L + + ++ RH+ L + L+ A + + Sbjct: 364 ARTGDGVQELADRMAQVVLKGEGVSASSCMVTNVRHMALLEEAREDLDAAERAVSEGWTV 423 Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D+ A +LR A LG I G E+LL+ IFS+FC+GK Sbjct: 424 DVAAVDLRAAWEHLGDILGERAGEELLNRIFSQFCLGK 461 >gi|90194138|gb|ABD92630.1| ThdF [Pasteurella multocida subsp. septica] Length = 433 Score = 246 bits (629), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 158/433 (36%), Positives = 242/433 (55%), Gaps = 29/433 (6%) Query: 19 AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGE 78 I I+R+SGP +V + K P PR A F DG +LD+G+ + F +P SFTGE Sbjct: 7 GIGILRVSGPKAVEVAHAVLGKC-PKPRMADYLPFKDSDGSVLDQGIALYFKAPHSFTGE 65 Query: 79 DSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSE 138 D E HGG V++ +L+ + ++ LRLA PGEFS +AF N K+DL +AE++ADLI + Sbjct: 66 DVLELQGHGGQVVLDLLLKRILQLEGLRLARPGEFSEQAFLNDKLDLAQAEAIADLIDAS 125 Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LND 195 +E R +++ + GE S+ Q +D + ++R+++EA +DF +EE + + ++ LND Sbjct: 126 SEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEAAIDFPDEE-IDFLADGKIEAHLND 184 Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255 I+ + + S+ K G I+R G K+VI G NAGKSSL NALA ++ AIVTDI GTTR Sbjct: 185 IITQLDHVR---SEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTR 241 Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL----------- 304 DVL + ++G + I DTAG+RE D VE+ GI R + E+E AD ILL Sbjct: 242 DVLREHIHIDGMPLHIIDTAGLREATDEVERIGIVRAWSEIEQADRILLMLDSTEADNQD 301 Query: 305 LKEINSKKEISFPKNIDFIFIGTKSDLYST---YTEEYDHLI---SSFTGEGLEELINKI 358 L+++ S+ P NI + K+DL E++ + + S+ T +G+ L + Sbjct: 302 LEKVRSEFLTKLPSNIPVTIVRNKADLSGEKEGIVEQHGYTVITLSAKTQQGVALLREHL 361 Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLASVSL 416 K + + + + +RHL L Q +L+ L + G +++AE LR L Sbjct: 362 KHSMGYQ-TNMEGGFLARRRHLEALEQAATHLQQGHVQLTQFYAG-ELLAEELRRVQNHL 419 Query: 417 GKITGCVDVEQLL 429 +ITG + LL Sbjct: 420 SEITGQFTSDDLL 432 >gi|332143488|ref|YP_004429226.1| tRNA modification GTPase [Alteromonas macleodii str. 'Deep ecotype'] gi|327553510|gb|AEB00229.1| tRNA modification GTPase [Alteromonas macleodii str. 'Deep ecotype'] Length = 462 Score = 246 bits (629), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 156/461 (33%), Positives = 246/461 (53%), Gaps = 33/461 (7%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + I+R+SGP + E + + PR A+ F + ++D+G+ Sbjct: 9 DTITAQATAPGRGGVGIVRVSGPKAKAIAEALVPSELT-PRLATYTPFVDANKSVIDQGI 67 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + F P SFTGED E HGG V++ +++ + + RLA+PGEFS +AF N K+DL Sbjct: 68 ALFFKGPNSFTGEDVLELQGHGGQVVMDMLIDAVLATGHARLASPGEFSEQAFLNDKLDL 127 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + ++ R ++ + GE S+ D++ H+R ++EA +DF EEE + Sbjct: 128 AQAEAIADLIDASSKQAARSALRSLQGEFSTQIQTLSDQIVHLRMYVEAAIDFPEEE-ID 186 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S ++ D+ + ++ Q K G ++R G ++VI G NAGKSSL NALA +D A Sbjct: 187 FLSDGKISGDLSTIMQSLTKVRDQAKQGTLLREGMQVVIAGRPNAGKSSLLNALAGRDSA 246 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTDI GTTRDVL + ++G V I DTAG+RE+ D VE+ GI+R + + AD +L + Sbjct: 247 IVTDIAGTTRDVLKEHIHIDGMPVHIIDTAGLRESPDKVEQIGIERAWQAINEADHVLFV 306 Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDL-------YSTYTEEYD-HLISSF 346 + + I P+ I + K+DL S T++ D +I+ Sbjct: 307 VDSTATSVIDPYEIWPEFMARLPQGIPVTVVRNKADLSTLSIGQSSVNTQQGDISVINLS 366 Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPS------HKRHLYHLSQTVRYLEMASLNEKDC 400 EG + + ++ ++ K + F + +RH+ L Q Y+ D Sbjct: 367 AKEG-----SGVDTLKAHLAKTMGFDTTTEGQFIARRRHIDALDQAYSYVSTGEQQLHDA 421 Query: 401 -GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LRLA +L +ITG + LL IFS FCIGK Sbjct: 422 MAGELLAEELRLAHQALCEITGEFTPDDLLGKIFSSFCIGK 462 >gi|91777105|ref|YP_546861.1| tRNA modification GTPase TrmE [Methylobacillus flagellatus KT] gi|123078704|sp|Q1GXL7|MNME_METFK RecName: Full=tRNA modification GTPase mnmE gi|91711092|gb|ABE51020.1| tRNA modification GTPase trmE [Methylobacillus flagellatus KT] Length = 446 Score = 246 bits (629), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 165/448 (36%), Positives = 252/448 (56%), Gaps = 19/448 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A++T I ++R+SGPS + E + P PR A+ F ++D+G+ Sbjct: 5 DTIAAIATAPGSGGIGVVRISGPSSRLIAEAVLGHCPP-PRHAAYLAFRDAHALLIDRGI 63 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 I +P P S+TGED E HGG A++ +L+ ++ R A PGEF+RRA+ N K+DL Sbjct: 64 AIYYPGPHSYTGEDVLELQAHGGPALMQILLKRCLEL-GARQAEPGEFTRRAYLNDKLDL 122 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++AD+I++ TE R ++ +SGE S+ KL +R ++EA LDF EE D+ Sbjct: 123 AQAEAVADVINAATEAAARSAVRSLSGEFSARIHSLQQKLVDLRLYVEACLDFPEE-DID 181 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S V + + + + + + G ++R G ++V++G N GKSSL N LA ++VA Sbjct: 182 FISQGRVAEKLAEVTAGLEAVFREARQGNLLREGLQVVLVGQPNVGKSSLMNQLAGEEVA 241 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVT I GTTRD + + + G + I+DTAG+RET+D VE+ GI RT+ +ENA + LLL Sbjct: 242 IVTPIAGTTRDTIKNSIQINGITLHITDTAGLRETNDEVEQHGIARTWRALENAGVALLL 301 Query: 306 KEIN---SKKEIS----FPKNIDFIFIGTKSDLYSTYT--EEYD---HL-ISSFTGEGLE 352 + K E S P+ + I+I K DL ST EE D H+ +S+ TG+G+ Sbjct: 302 VDAAHGIGKVEKSILARLPQFLPKIWIHNKIDLESTPPKIEEQDGETHIHLSARTGDGVH 361 Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLA 412 L ++ I + + + RHL L++ +LE+A+ ++ AE LRLA Sbjct: 362 LLRQRLLDIAGWQPSGEGVFM-ARSRHLLALNKVRDHLEVAAGRLMQA--ELFAEELRLA 418 Query: 413 SVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +L ITG + LL IFS+FCIGK Sbjct: 419 QDALSTITGEFTSDDLLGEIFSRFCIGK 446 >gi|90581133|ref|ZP_01236932.1| tRNA modification GTPase [Vibrio angustum S14] gi|90437654|gb|EAS62846.1| tRNA modification GTPase [Vibrio angustum S14] Length = 455 Score = 246 bits (629), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 163/458 (35%), Positives = 244/458 (53%), Gaps = 21/458 (4%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 MN +TI A +T + IIR+SGP +V + ++ R A F DG Sbjct: 1 MNQHIDTIVAQATPPGRGGVGIIRVSGPKAKEVALAVAGRELK-TRYAEYLPFKNEDGTA 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + F P SFTGED E HGG +++ ++ + K+ +R A PGEFS RAF N Sbjct: 60 LDQGIALFFKGPNSFTGEDVLELQGHGGPVLMDMMIRRILKIDGIRAARPGEFSERAFMN 119 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + +E + + + + G S+ + ++ L H+R F+EA +DF E Sbjct: 120 DKLDLAQAEAIADLIDASSEEAAKSAFKSLQGAFSTKVNELVEALIHLRIFVEAAIDFPE 179 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + S +V D+ + + +++ + G I+R G K+VI G NAGKSSL NAL+ Sbjct: 180 EE-IDFLSDGKVGGDLNGIIDRLNAVRKEANQGAIMREGMKVVIAGRPNAGKSSLLNALS 238 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 KD AIVTDI GTTRDVL + ++G + I DTAG+RE D VE+ GI+R + E+ +AD Sbjct: 239 GKDSAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWDEIAHAD 298 Query: 301 LILLL-----KEINSKKEI------SFPKNIDFIFIGTKSDLYSTYT----EEYDHLI-- 343 +L + + KEI P ++ I K++L LI Sbjct: 299 RVLFMVDSTTTDATDPKEIWPDFIERLPADMGLTVIRNKAELTGEQAGICHANNPTLIRL 358 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGL 402 S+ TG+G++ L +K + + +RHL L + +L + E Sbjct: 359 SARTGDGVDALREHLKQCMGFS-GTTEGGFMARRRHLDALERAAEHLAIGKEQLEGFMAG 417 Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +I+AE LRLA L +ITG + LL IF+ FCIGK Sbjct: 418 EILAEELRLAQQHLSEITGEFTSDDLLGRIFTSFCIGK 455 >gi|238881895|gb|EEQ45533.1| conserved hypothetical protein [Candida albicans WO-1] Length = 499 Score = 246 bits (629), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 166/488 (34%), Positives = 272/488 (55%), Gaps = 54/488 (11%) Query: 2 NHEKETIFAVSTGALPSAISIIRLSGP-SCFQVCEFICKKKKPFPRKASLRYFFGLDGR- 59 N K T+FA+ST SAI+++R+SGP S + + K P R AS+R + + Sbjct: 17 NPLKPTVFALSTKFGKSAIAVVRISGPQSKYIYHKLTNSTKPPKNRIASVRKLYSPEPHS 76 Query: 60 -----ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKM--PN----LRLA 108 LD+ L + P P+++TGED E H+HGG+A++ +L+ + K+ PN +R A Sbjct: 77 NKKSVFLDEALTLFLPGPKTYTGEDLLELHLHGGVAIIKSVLQSIKKLHDPNNGVIIRQA 136 Query: 109 NPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHI 168 + GEFS++AF NG++DL E E + D+I++ETE QR S+ SG+ + +W +++ + Sbjct: 137 DRGEFSKQAFYNGRLDLTELEGINDMINAETESQRLASLASSSGQTKIEFMKWRNEIINQ 196 Query: 169 RSFIEADLDFSEEEDVQNFSS--KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILG 226 + + +DF E+ D++ ++V +I ++++I +++S+ K +I+ NG ++ +LG Sbjct: 197 MANLTMIIDFGEDHDIEETDRMIRDVKENIAKIESEIKAYLSKVKSSQILLNGIQLALLG 256 Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--ETDDIV 284 NAGKSS+ N LA KD AIV++I GTTRD+L I L++ GY V + DTAGIR E D + Sbjct: 257 PPNAGKSSILNILANKDAAIVSEIAGTTRDILDIPLEIGGYKVVVGDTAGIRSFEEADSI 316 Query: 285 EKEGIKRTFLEVENADL-ILLLKEINSKKE---------ISFPKNIDFIFIGTKSDLYST 334 E+EGIKR ADL I++L ++ +KE N + + K DL+++ Sbjct: 317 EQEGIKRAKQRSMLADLVIVVLDPMSVEKEPLELKEHLKTLVKANKQMLIVLNKQDLFAS 376 Query: 335 YTEE--------------YDHLISSFTGEGLEELINKIKSILSNKFKKL-------PFSI 373 +EE Y H++S TG G++ L + +L KFK L P + Sbjct: 377 RSEEMISNYSRLLDLPKNYFHVVSCSTGSGIDNL----QKLLIEKFKDLSQSETSNPIIV 432 Query: 374 PSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITG-CVDVEQLLDII 432 S + + + E + + L + + LR + +GKITG +D+E++LD++ Sbjct: 433 SSRVQDILENDILFGFKEFYHWADAEDVL-VATDCLRQSVDGIGKITGQSIDLEEILDVV 491 Query: 433 FSKFCIGK 440 FS FCIGK Sbjct: 492 FSSFCIGK 499 >gi|294656970|ref|XP_002770353.1| DEHA2D18546p [Debaryomyces hansenii CBS767] gi|199431868|emb|CAR65707.1| DEHA2D18546p [Debaryomyces hansenii] Length = 516 Score = 246 bits (629), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 162/484 (33%), Positives = 264/484 (54%), Gaps = 54/484 (11%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGLDGRILDK 63 K TI+A+ST SAI +IR+SG + + K K P + AS+R + + +LD+ Sbjct: 39 KPTIYALSTKLARSAIGVIRVSGSQSQYIYNQLTKTSKSPKLKIASVRKLYSQEDILLDE 98 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP------NLRLANPGEFSRRA 117 L + F SP+++TGED E H+HGG A++ +L + K+ N+R A GEFSRRA Sbjct: 99 ALTLYFKSPKTYTGEDILELHLHGGTAIIQSVLNAIKKLHEPNKGINIRYAENGEFSRRA 158 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NG+ DL E E + ++I +ETE QR ++ ++G+ + +W +++ + + +D Sbjct: 159 FINGRFDLTEIEGIREMIDAETESQRVAALSSLTGDTKKTFAKWREEIVKNVALLTTVID 218 Query: 178 FSEEEDVQNFSS--KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 F E+ D++ + V ++ L +I++ + + E++ G K+++LG NAGKSSL Sbjct: 219 FGEDHDIEEVAQLFDTVEQNMDTLTGEINTFLRKVLSSEVLMKGIKLILLGPPNAGKSSL 278 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD--DIVEKEGIKRTF 293 N LA K+ AIV+DI GTTRDV+ + LD+ GY V + DTAGIR T D +E EGIKR Sbjct: 279 LNYLANKEAAIVSDIAGTTRDVIDVPLDINGYKVIVGDTAGIRTTTNADKIELEGIKRAK 338 Query: 294 LEVENADLILLLKEINSKKEISFPKNI-----------DFIFIGTKSDLYS--------- 333 L+ DL+L++ + I + + + + + K DL S Sbjct: 339 LKSLGGDLVLVVLPLEDNSYIDYSDLVSHINLLKDEEKEIVVVLNKQDLLSSSNFTKNEI 398 Query: 334 --TYTE------EYDHLISSFTGEGLEELINKIKSILSNKFKKL-------PFSIPSHKR 378 +Y+E E HL+S TG+G+ EL+ +L++ FK + P I + + Sbjct: 399 IQSYSEKLILPVENFHLVSCITGDGISELM----CVLTDIFKAISLTETTDPIVISARAQ 454 Query: 379 HLYHLSQTVRY-LEMASLNEKDCGLDIIAENLRLASVSLGKITG-CVDVEQLLDIIFSKF 436 + L V Y +E + + + + +E+L+ A+ +GKITG + VE++L ++FS F Sbjct: 455 DI--LRNDVIYGIEQFKIWREQDDVVLASESLKQAAEGIGKITGEAIGVEEVLGVVFSSF 512 Query: 437 CIGK 440 CIGK Sbjct: 513 CIGK 516 >gi|291615448|ref|YP_003525605.1| tRNA modification GTPase TrmE [Sideroxydans lithotrophicus ES-1] gi|291585560|gb|ADE13218.1| tRNA modification GTPase TrmE [Sideroxydans lithotrophicus ES-1] Length = 447 Score = 246 bits (628), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 163/454 (35%), Positives = 245/454 (53%), Gaps = 21/454 (4%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+ + + I A++T I ++R+SG S I + PR A+ F DG Sbjct: 1 MSLKPDNIAAIATAPGRGGIGVVRVSG-SGLAAMAIILTGNRLTPRLATYTSFLAADGST 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP+P S+TGE+ E HGG AV+ +L ++ RLA PGEF++RAF N Sbjct: 60 LDQGICLFFPAPHSYTGEEVLELQGHGGPAVLQSLLHRCLEL-GARLAQPGEFTQRAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AES+ADLI + TE R +M + GE S+ + +L +R +EA LDF E Sbjct: 119 DKMDLAQAESVADLIDATTEQAARSAMRSLQGEFSAAIHHAVSQLIDLRMLVEATLDFPE 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE ++ + + L + ++ K G I+R G ++V++G NAGKSSL N A Sbjct: 179 EE-IETADRLLCASKLNILMDGLARIAGLAKQGSILREGAQVVLVGAPNAGKSSLLNRFA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 +++A+V++IPGTTRD + L + G + + DTAG+RET+D VE+ GI RT L + AD Sbjct: 238 GEEIALVSEIPGTTRDSIRQALQVRGVPLHLIDTAGLRETNDAVEQMGIARTKLALTRAD 297 Query: 301 LIL-LLKEINSKKE-------ISFPKNIDFIFIGTKSDLYSTYTE-EYD----HL-ISSF 346 ++L LL E + E P +++ K DL E D H+ +S+ Sbjct: 298 VVLVLLDESRRRTEPEDFAVLAQLPAKTPCLYLHNKVDLSGHMPGVEIDADKIHIYLSAK 357 Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIA 406 TG G+E L K+ + S + + + RHL L+ +LE A ++ +I A Sbjct: 358 TGAGMEVLEEKL--LESIGWHQETGVFMARTRHLEALATAGLHLEGA--RQQIDRPEIFA 413 Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E LR A +L ITG + LL IFS+FCIGK Sbjct: 414 EELRHAQEALSSITGEFSADDLLGEIFSRFCIGK 447 >gi|163783084|ref|ZP_02178079.1| tRNA modification GTPase TrmE [Hydrogenivirga sp. 128-5-R1-1] gi|159881764|gb|EDP75273.1| tRNA modification GTPase TrmE [Hydrogenivirga sp. 128-5-R1-1] Length = 448 Score = 246 bits (628), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 165/451 (36%), Positives = 256/451 (56%), Gaps = 19/451 (4%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCF-QVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63 K+ I A++T SAI ++RL+G V + K + PR A G +D+ Sbjct: 2 KDPIVAIATPFGESAIGVVRLTGKDVLPTVLRYFRTKSEVKPRYAHYGTLVDERGEPIDE 61 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 G+L+ + +P S+TGED E +HG ++ +LE L RLA PGEF+RRAF NGK+ Sbjct: 62 GILVYYRAPNSYTGEDMVELSLHGNPLILKRVLE-LFLSAGCRLAEPGEFTRRAFLNGKL 120 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL +AE++A+LIS++TE+ RR S+ + GELS + L + ++IEAD++FSEE D Sbjct: 121 DLAQAEAVAELISAKTELARRASLRQLRGELSRYVNSLRESLLELSAYIEADIEFSEE-D 179 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 + + ++V+ + + I +S K G+++R G K+ I+G N GKSSLFNAL K+D Sbjct: 180 IPTLTKEQVIGMVDRVLEGIDQLLSTAKTGKLLREGIKLAIVGRPNVGKSSLFNALLKED 239 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303 AIVTDI GTTRD + L+L G V++ DTAGIRE++D VE+ G++R+ ++E AD++L Sbjct: 240 RAIVTDIEGTTRDYIEESLNLRGIPVRLIDTAGIRESEDPVERIGVERSMEKIEEADVVL 299 Query: 304 LL----KEINSKKEISFPK--NIDFIFIGTKSDLYSTYTEE--YDHLI---SSFTGEG-- 350 + +E+ + + + K + D + + K D E H I S+ G G Sbjct: 300 FVVDASEELREEDSLIYEKLGDKDIVVVFNKIDRGEVVPLEKFQGHSIIKVSALKGYGLK 359 Query: 351 -LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENL 409 LEE I K ++++ + S+ H+ L +T+ E D +I ++ Sbjct: 360 DLEEEILKKAGAVAHEGLNIYVSV-RHEELLKKARETLSKFRDRYAKE-DISPEIAMLDV 417 Query: 410 RLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 R AS LG+I G + E++L IFS+FCIGK Sbjct: 418 REASDFLGEIVGHITTEEVLGSIFSRFCIGK 448 >gi|190171214|gb|ACE63677.1| ThdF [Enterobacter helveticus] Length = 427 Score = 246 bits (628), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 150/422 (35%), Positives = 236/422 (55%), Gaps = 23/422 (5%) Query: 19 AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGE 78 + I+R+SG V + + K P PR A F D LD+G+ + FP P SFTGE Sbjct: 10 GVGILRISGKQARDVAQAVLGKL-PKPRYADYLPFKDSDNTPLDQGIALWFPGPNSFTGE 68 Query: 79 DSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSE 138 D E HGG +++ +L+ + +P +R+A PGEFS RAF N K+DL +AE++ADLI + Sbjct: 69 DVLELQGHGGPVILDLLLKRILTIPGVRIARPGEFSERAFLNDKLDLAQAEAIADLIDAS 128 Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILF 198 +E R ++ + G S+ ++ LTH+R F+EA +DF +EE + S ++ + Sbjct: 129 SEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEE-IDFLSDGKIEAQLNT 187 Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 + D+ + ++ + G ++R G K+VI G NAGKSSL NALA ++ AIVTDI GTTRDVL Sbjct: 188 VIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVL 247 Query: 259 TIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS--- 315 + ++G + I DTAG+RE D VE+ GI+R + E+E AD +L + + + + Sbjct: 248 REHIHIDGMPLHIIDTAGLREASDEVERIGIERAWKEIEQADRVLFMVDGTTTDAVDPAQ 307 Query: 316 --------FPKNIDFIFIGTKSDLY---STYTEEYDH---LISSFTGEGLEELINKIKSI 361 P+N+ + K+D+ + +E H +S+ +GEG+E L + +KS Sbjct: 308 IWPDFMARLPQNLPITVVRNKADVTGEPAGLSEVNGHSLIRLSARSGEGVEVLRDHLKSS 367 Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSLGKI 419 + + + +RHL L + +L+ A L G +++AE LRLA SL +I Sbjct: 368 MGFD-TNMEGGFLARRRHLQALEEAANHLQQGKAQLLGAWAG-ELLAEELRLAQQSLSEI 425 Query: 420 TG 421 TG Sbjct: 426 TG 427 >gi|297539957|ref|YP_003675726.1| tRNA modification GTPase TrmE [Methylotenera sp. 301] gi|297259304|gb|ADI31149.1| tRNA modification GTPase TrmE [Methylotenera sp. 301] Length = 449 Score = 246 bits (628), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 163/448 (36%), Positives = 255/448 (56%), Gaps = 19/448 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A++T + I ++R+SGP Q+ + P PR A+ F +G ++D+G+ Sbjct: 8 DTIAAIATASGAGGIGVVRVSGPFSGQIATGVLGHI-PAPRHAAYLDFKQANGDLIDRGI 66 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 I +P+P S+TGED E HGG A++ +L ++ R A PGEF+RRA+ N KIDL Sbjct: 67 AIYYPNPHSYTGEDVLELQAHGGTALMQILLARCIEL-GARQAEPGEFTRRAYLNDKIDL 125 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI++ T + ++ +SGE S + KL +R F+EA LDF EEE + Sbjct: 126 AQAEAVADLINAATAEAAKSAVRSLSGEFSQRINTLLLKLIDLRMFVEACLDFPEEE-ID 184 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 + V + + + ++++ ++ K G ++R G +V++G N GKSSL N LA +++A Sbjct: 185 FITQGRVADKLATIIVELNAVFAKAKQGSLLREGINVVLVGQPNVGKSSLMNQLAGEEIA 244 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVT I GTTRD + + + G + + DTAG+RETDD VEK GI+RT+ ++A++ LLL Sbjct: 245 IVTSIAGTTRDTIKNAIQINGVPLHVIDTAGLRETDDEVEKFGIERTWRAAQSANIALLL 304 Query: 306 KE-----INSKKEI--SFPKNIDFIFIGTKSDLYS--TYTEEYD---HL-ISSFTGEGLE 352 + ++K I P+ I I++ K D+ + E D H+ +S+ TG GL+ Sbjct: 305 VDAAHGITETEKSILARLPQEIRKIWVHNKIDVANEPALVAEKDGAMHIYLSAKTGAGLD 364 Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLA 412 L + + L+ + RHL LSQ +L AS E+ ++IAE LR++ Sbjct: 365 LLKSHLLK-LAGYENNSEGVFMARARHLEALSQVQIHLNFAS--EQINSAELIAEELRIS 421 Query: 413 SVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +L ITG + LL IFSKFCIGK Sbjct: 422 QDALSSITGEFTPDDLLGEIFSKFCIGK 449 >gi|297182384|gb|ADI18549.1| predicted GTPase [uncultured gamma proteobacterium HF4000_23L14] Length = 446 Score = 246 bits (628), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 163/449 (36%), Positives = 252/449 (56%), Gaps = 21/449 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 ETI A++T S I +IR+SGP + + + PR A F+ + +DKG+ Sbjct: 5 ETICALATAIGQSGIGVIRVSGPLSKVIANKVLNVELE-PRVAHYGSFYDEESNQIDKGV 63 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 I F P+S+TGED E HGG++V+ +LE + RL+ PGEF++RAF NGK+DL Sbjct: 64 AIYFSGPQSYTGEDVLELQGHGGMSVLRKLLETVIFF-GARLSEPGEFTKRAFLNGKMDL 122 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 ++AE++ DLI + ++ ++ ++GE S Q + L +R F+EA +DFS+EE + Sbjct: 123 VQAEAVQDLIQASSDKSALSAVRSLTGEFSEKINQLLRDLIDLRVFVEATIDFSDEE-ID 181 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S EV + LK ++ + G I+R+G + I G NAGKSSL NAL K+ A Sbjct: 182 FLESHEVSTKLEILKKELLDTLDCANQGAILRDGLHVAIAGKPNAGKSSLLNALTKQPSA 241 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTDI GTTRDVL + +EG + I DTAG+ ++D+I+E+EGI+R E++NAD++LL+ Sbjct: 242 IVTDIAGTTRDVLKETIHVEGMPLHIIDTAGLHKSDNIIEQEGIRRAHAEIDNADVVLLV 301 Query: 306 KEI-NSKKEISFPKNI----DFIFIGTKSDLYST------YTEEYDHLISSFTGEGLEEL 354 + +S + S ++ I I K DL + + + + +S+ G+G+E L Sbjct: 302 YDAKDSSADPSILPDVMVSKPIIAIRNKIDLLNAKAGMRQFEGQTEISLSAKFGDGIELL 361 Query: 355 INKIKSILSNKFKKLPFS---IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411 + LS+ P + KRH+ + T+ + A + +++AE+LR Sbjct: 362 ----RQALSDVAGYNPVGNGVFLARKRHILAIESTLISINSAIEQLEVGASELVAEDLRQ 417 Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A +SLG ITG + LL IFS FCIGK Sbjct: 418 AGMSLGMITGEFSSDDLLGEIFSSFCIGK 446 >gi|294341965|emb|CAZ90394.1| tRNA modification GTPase trmE [Thiomonas sp. 3As] Length = 472 Score = 246 bits (628), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 163/472 (34%), Positives = 254/472 (53%), Gaps = 35/472 (7%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 + + + I A++T A+ I+R SG S + + I + PR A+ F G + Sbjct: 4 LAQDADPIVAIATAPGRGAVGIVRASGKSLGALAQAITGRVL-LPRHATYLPFGDGQGGV 62 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEEL---AKMPNLRLANPGEFSRRA 117 +D+GL + FP+P S+TGED E +HGG V+ +L L LR+A PGEF+RRA Sbjct: 63 IDRGLALFFPAPHSYTGEDVLELQIHGGPVVLQLLLARLLELGASSRLRVAQPGEFTRRA 122 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NGK+DL +AES+ADLI + TE R + ++GELS +L +R +EA LD Sbjct: 123 FLNGKLDLAQAESVADLIEASTEAAARSATRALAGELSQAVRALAAELVELRLLVEATLD 182 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 F EE D+ + + L+ + ++ + G ++R G ++V+ G N GKSSL N Sbjct: 183 FPEE-DIDFLRQAQAQRRLQALQQTLQQVQAKTRQGALLREGLQVVLAGQPNVGKSSLLN 241 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 ALA ++AIVT I GTTRD ++ + +EG + I DTAG+R++ D VE+ G++R++ + Sbjct: 242 ALAGAELAIVTPIAGTTRDKVSQTIQIEGVPLHIVDTAGLRDSADAVERIGVERSWHAIA 301 Query: 298 NADLILLLKEI---------NSKKEIS--FPKNIDFIFIGTKSD-------------LYS 333 AD+++ L ++ ++ EI+ PK + + K D +++ Sbjct: 302 GADVVVFLHDLTRLQAPGYAQAEAEIARGLPKGAPLLHVFNKRDCVETGAQARLLPQVWA 361 Query: 334 TYTEEYDH--LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391 + E IS+ TG+GL+EL K+ + + I + +RH+ L QT ++L Sbjct: 362 QWGVEAGESVWISAATGDGLQELRLKLLQLAGAQPTSEGVFI-ARQRHVQALEQTGQHLG 420 Query: 392 MA-SLNEKD--CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A L E D LD++AE LRL+ +L ITG + LL IFS FCIGK Sbjct: 421 AALHLIELDAQAPLDLLAEELRLSHQALMAITGEYTPDDLLGAIFSSFCIGK 472 >gi|331268194|ref|YP_004394686.1| tRNA modification GTPase TrmE [Clostridium botulinum BKT015925] gi|329124744|gb|AEB74689.1| tRNA modification GTPase TrmE [Clostridium botulinum BKT015925] Length = 462 Score = 246 bits (628), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 173/464 (37%), Positives = 266/464 (57%), Gaps = 32/464 (6%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFP--RKASLRYFFGLD- 57 E +TI A++T S +SIIR+SG + FI K + R S+RY F +D Sbjct: 5 KEFDTIAAIATNLGESGVSIIRVSGERALSIVSDIFIGKNDRKLDDIRTYSMRYGFIIDK 64 Query: 58 --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 G LD+ ++ P SFT ED E + HGG+ V ILEE+ K RLA+PGEF++ Sbjct: 65 VSGEKLDEVIVSYMKGPRSFTAEDVVEINCHGGVVVTKRILEEVMK-AGARLASPGEFTK 123 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG+IDL +AE++ DLI+++TE+ + ++E G+LS DKL I + IEA Sbjct: 124 RAFLNGRIDLSQAEAVIDLINAKTELSAKSALEQSEGKLSKEISHLRDKLLEIIANIEAT 183 Query: 176 LDFSEE--EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233 +D+ E+ E+V + KE ++ I+ ++I ++ G+I+R G VI+G N GKS Sbjct: 184 VDYPEDDLEEVTSERGKEAVDKIV---SEIDKLLNSANEGKILREGLNTVIVGKPNVGKS 240 Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293 S+ NAL + AIVTDIPGTTRDV+ + +EG +KI DTAGIRETDDIVEK G++++ Sbjct: 241 SILNALLMETRAIVTDIPGTTRDVIEEYMSIEGIPIKIVDTAGIRETDDIVEKIGVEKSR 300 Query: 294 LEVENADLILLL----KEINS--KKEISFPKNIDFIFIGTKSDLYSTYTEE------YDH 341 ++ N+DL +L+ +++++ K+ I F K+ +I + K DL + +E D+ Sbjct: 301 EKILNSDLTVLVLDSSRQLDAEDKEIIDFIKDKKYIVLLNKIDLDTKLDKESLNKLNSDY 360 Query: 342 L--ISSFTGEGLEELINKIKSILSN---KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396 + IS+ TG+GL+ IK + + K + + HK L ++ + Sbjct: 361 IIDISARTGKGLDRFKEVIKELFFSGEVTSKDVMITNTRHKEALIRAKSSL--IAGKGAL 418 Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E +D+ + +LR A +LG+I G E ++D IFSKFC+GK Sbjct: 419 ENTFAIDLASIDLRDAWKNLGEINGDTVEEDIIDKIFSKFCLGK 462 >gi|319765051|ref|YP_004128988.1| tRNA modification gtpase trme [Alicycliphilus denitrificans BC] gi|317119612|gb|ADV02101.1| tRNA modification GTPase TrmE [Alicycliphilus denitrificans BC] Length = 465 Score = 246 bits (628), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 161/467 (34%), Positives = 238/467 (50%), Gaps = 30/467 (6%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 + ++ I A++T A+ I+R+SG + + + PR+A F GR Sbjct: 2 LARHQDPIAAIATAPGRGAVGIVRVSGRGLAPFVQGLLGRSLQ-PRQAHYLPFPDAAGRS 60 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEEL-----AKMPNLRLANPGEFSR 115 +D+GL + FP+P S+TGED E HGG V+ +L A +P LRLA PGEF+ Sbjct: 61 IDQGLALFFPAPHSYTGEDVLELQAHGGPVVLQLLLARCLEAAQAVLPRLRLAEPGEFTE 120 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF N K+DL +AE++ADLI + TE R + +SG S D L H+R +EA Sbjct: 121 RAFLNDKLDLAQAEAIADLIDASTEAAARSAGRSLSGAFSQEIHGLRDALVHLRMLVEAT 180 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 LDF EEE + + + L+ +++ + + G ++R G K+VI G NAGKSSL Sbjct: 181 LDFPEEE-IDFLRKADARGQLSNLQQTLAAVMQRASQGALLREGIKVVIAGQPNAGKSSL 239 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 NALA ++AIVT I GTTRD + + +EG + I DTAG+RE+ D VE+ GI R + E Sbjct: 240 LNALAGAELAIVTPIAGTTRDKVQQTIQIEGVPLHIIDTAGLRESADEVERIGIARAWDE 299 Query: 296 VENADLILLLKE---------------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD 340 + AD +L L + I S +++ I + K+D + Sbjct: 300 ITQADAVLFLHDLTRLDAPEYIAADALIASTLVQKLSESVPVIDVWNKTDAAARPAPAAT 359 Query: 341 HL-----ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL--EMA 393 +S+ TG+GL+ L ++ + + I + RH+ L +L A Sbjct: 360 AGRAAVQLSARTGQGLDALRRELLRVAGWQSAAEGVYI-ARARHIEALRAVDAHLMEAAA 418 Query: 394 SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L LD++AE LRLA +L ITG + LL +IFS FCIGK Sbjct: 419 QLESTGPALDLLAEELRLAQSALNAITGEFTSDDLLGVIFSSFCIGK 465 >gi|190171230|gb|ACE63685.1| ThdF [Enterobacter pulveris] Length = 439 Score = 246 bits (628), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 154/434 (35%), Positives = 239/434 (55%), Gaps = 23/434 (5%) Query: 19 AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGE 78 + I+R+SG V + + K P PR A F D LD+G+ + FP P SFTGE Sbjct: 10 GVGILRISGKLARDVAQAVLGKL-PKPRYADYLPFKDSDNTPLDQGIALWFPGPNSFTGE 68 Query: 79 DSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSE 138 D E HGG +++ +L+ + +P +R+A PGEFS RAF N K+DL +AE++ADLI + Sbjct: 69 DVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAEAIADLIDAS 128 Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILF 198 +E R ++ + G S+ ++ LTH+R F+EA +DF +EE + S ++ + Sbjct: 129 SEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEE-IDFLSDGKIEAQLNT 187 Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 + D+ + ++ + G ++R G K+VI G NAGKSSL NALA ++ AIVTDI GTTRDVL Sbjct: 188 VIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVL 247 Query: 259 TIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS--- 315 + ++G + I DTAG+RE D VE+ GI+R + E+E AD +L + + + + Sbjct: 248 REHIHIDGMPLHIIDTAGLREASDEVERIGIERAWKEIEQADRVLFMVDGTTTDAVDPAQ 307 Query: 316 --------FPKNIDFIFIGTKSDLYST---YTEEYDH---LISSFTGEGLEELINKIKSI 361 P+ + + K+D+ TE H +S+ +GEG+E L + +KS Sbjct: 308 IWPDFMARLPQALPITVVRNKADVTGEAPGLTEVNGHSLIRLSARSGEGVEVLRDHLKSS 367 Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSLGKI 419 + + + +RHL L + +L+ A L G +++AE LRLA SL +I Sbjct: 368 MGFD-TNMEGGFLARRRHLQALEEAANHLQQGKAQLLGAWAG-ELLAEELRLAQQSLSEI 425 Query: 420 TGCVDVEQLLDIIF 433 TG + LL IF Sbjct: 426 TGEFTSDDLLGRIF 439 >gi|190171246|gb|ACE63693.1| ThdF [Escherichia hermannii] Length = 438 Score = 246 bits (628), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 155/438 (35%), Positives = 241/438 (55%), Gaps = 29/438 (6%) Query: 18 SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77 + I+R+SG V + + K P PR A F +D LD+G+ + FP P SFTG Sbjct: 8 GGVGILRISGLKARDVAQAVLGKL-PKPRYADYLPFRDVDNTALDQGIALWFPGPNSFTG 66 Query: 78 EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137 ED E HGG +++ +L+ + +P +R+A PGEFS RAF N K+DL +AE++ADLI + Sbjct: 67 EDVLELQGHGGPVILDLLLKRILTIPGVRIAKPGEFSERAFLNDKLDLAQAEAIADLIDA 126 Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LN 194 +E R ++ + G S+ Q ++ LTH+R ++EA +DF +EE + S ++ LN Sbjct: 127 SSEQAARSALNSLQGAFSTRVNQLVEALTHLRIYVEAAIDFPDEE-IDFLSDGKIEAQLN 185 Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254 D++ D+ + ++ + G ++R G K+VI G NAGKSSL NALA ++ AIVTDI GTT Sbjct: 186 DVM---ADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTT 242 Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314 RDVL + ++G + I DTAG+RE D VE+ GI+R + E+E AD +L + + + Sbjct: 243 RDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAT 302 Query: 315 S-----------FPKNIDFIFIGTKSDLY---STYTEEYDH---LISSFTGEGLEELINK 357 P+ + + K+D+ +E H +S+ TG G++ L + Sbjct: 303 DPAAIWPDFIARLPQKLPITVVRNKADITGEPQGLSEVNGHSLIRLSARTGNGVDVLRDH 362 Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVS 415 +K + + + +RHL L ++LE A L G +++AE LRLA S Sbjct: 363 LKHSMGFD-TNMEGGFLARRRHLQALENAAQHLEQGKAQLLGAWAG-ELLAEELRLAQQS 420 Query: 416 LGKITGCVDVEQLLDIIF 433 L +ITG + LL IF Sbjct: 421 LSEITGEFTSDDLLGRIF 438 >gi|190171226|gb|ACE63683.1| ThdF [Enterobacter pulveris] Length = 439 Score = 246 bits (628), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 154/433 (35%), Positives = 239/433 (55%), Gaps = 23/433 (5%) Query: 20 ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGED 79 + I+R+SG V + + K P PR A F D LD+G+ + FP P SFTGED Sbjct: 11 VGILRISGKLARDVAQAVLGKL-PKPRYADYLPFKDSDNTPLDQGIALWFPGPNSFTGED 69 Query: 80 SAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET 139 E HGG +++ +L+ + +P +R+A PGEFS RAF N K+DL +AE++ADLI + + Sbjct: 70 VLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAEAIADLIDASS 129 Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFL 199 E R ++ + G S+ ++ LTH+R F+EA +DF +EE + S ++ + + Sbjct: 130 EQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEE-IDFLSDGKIEAQLNTV 188 Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259 D+ + ++ + G ++R G K+VI G NAGKSSL NALA ++ AIVTDI GTTRDVL Sbjct: 189 IGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLR 248 Query: 260 IDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS---- 315 + ++G + I DTAG+RE D VE+ GI+R + E+E AD +L + + + + Sbjct: 249 EHIHIDGMPLHIIDTAGLREASDEVERIGIERAWKEIEQADRVLFMVDGTTTDAVDPAQI 308 Query: 316 -------FPKNIDFIFIGTKSDLYST---YTEEYDH---LISSFTGEGLEELINKIKSIL 362 P+ + + K+D+ TE H +S+ +GEG+E L + +KS + Sbjct: 309 WPDFMARLPQALPITVVRNKADVTGEAPGLTEVNGHSLIRLSARSGEGVEVLRDHLKSSM 368 Query: 363 SNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSLGKIT 420 + + +RHL L + +L+ A L G +++AE LRLA SL +IT Sbjct: 369 GFD-TNMEGGFLARRRHLQALEEAAAHLQQGKAQLLGAWAG-ELLAEELRLAQQSLSEIT 426 Query: 421 GCVDVEQLLDIIF 433 G + LL IF Sbjct: 427 GEFTSDDLLGRIF 439 >gi|222056913|ref|YP_002539275.1| tRNA modification GTPase TrmE [Geobacter sp. FRC-32] gi|221566202|gb|ACM22174.1| tRNA modification GTPase TrmE [Geobacter sp. FRC-32] Length = 455 Score = 246 bits (628), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 171/463 (36%), Positives = 259/463 (55%), Gaps = 38/463 (8%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DGR 59 ++TI A+ST ISIIR+SGP C + + I ++ + K S R+++G+ Sbjct: 4 RDTIAAISTPIGEGGISIIRISGPDCLSIADRIFRRSRDGGLK-SHRFYYGVIFDPDSAA 62 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 ILD+ ++++ P SFT ED E H HGG VV IL L RLA+PGEF++RAF Sbjct: 63 ILDEAMVVLMRGPNSFTREDVLELHCHGGYLVVRRILA-LVLRQGARLADPGEFTKRAFL 121 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NG+IDL++AE++ D+I S++EM L+ G LS Q + L +F+EA +DF Sbjct: 122 NGRIDLVQAEAIMDIIHSKSEMSLNLAQHQREGLLSRQLFQLKEYLLSSLAFLEAFIDFP 181 Query: 180 EEEDVQNFSSKE----VLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 EE+ + S+KE ++ L + +++ S S+G+ IIR G +VI G N GKSSL Sbjct: 182 EED--IDVSAKEHIGQNIDSSLLMLDELLSGFSEGR---IIREGVSVVIAGKPNVGKSSL 236 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 NAL ++ AIVT IPGTTRD++ + + G VK+ DTAGIRE+DD VEKEG+K + + Sbjct: 237 LNALLQEKRAIVTAIPGTTRDLIEEQMTINGLPVKLLDTAGIRESDDHVEKEGVKLSLEK 296 Query: 296 VENADLILLLKEINS------KKEISFPKNIDFIFIGTKSDLYSTYTEEYDH-----LIS 344 + +ADL+L + + +S + + F+ + KSD+ +Y ++ +S Sbjct: 297 LSSADLVLFVVDASSSFSAEDQSILERLSGFSFMVVKNKSDIDGSYVLPFEPELPVLSLS 356 Query: 345 SFTGEGLEELINKIKSILSNKFKKLP------FSIPSHKRHLYHLSQTVRYLEMASLN-E 397 + TG GL +L + + + F LP F S RH L+ L N + Sbjct: 357 THTGHGLVDL----QQAIFDFFIHLPDHDSREFVAISQVRHRDALTGCRNALANFKDNLD 412 Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++ LD++A +LR A SLG +TG + +LD IF +FCIGK Sbjct: 413 REVNLDLLAIDLRDALDSLGAVTGETTADDVLDRIFQQFCIGK 455 >gi|167626215|ref|YP_001676509.1| tRNA modification GTPase TrmE [Shewanella halifaxensis HAW-EB4] gi|189036208|sp|B0TQH0|MNME_SHEHH RecName: Full=tRNA modification GTPase mnmE gi|167356237|gb|ABZ78850.1| tRNA modification GTPase TrmE [Shewanella halifaxensis HAW-EB4] Length = 453 Score = 246 bits (627), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 161/454 (35%), Positives = 246/454 (54%), Gaps = 23/454 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + IIR+SG V + P R A F G ++D+G+ Sbjct: 4 DTIVAQATAPGRGGVGIIRVSGDLASNVAMAVLGHI-PKTRYADYCDFKEDSGEVIDQGI 62 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + F P SFTGED E HGG V++ +++ + ++ LR+A PGEFS +AF N K+DL Sbjct: 63 ALFFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVMEVDGLRIAKPGEFSEQAFMNDKLDL 122 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E + ++ + GE S+ ++K+T++R ++EA +DF +EE V Sbjct: 123 TQAEAIADLIDATSEQAAKSALNSLQGEFSTQVHDLVEKVTNLRLYVEAAIDFPDEE-VD 181 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S ++ + + + + K G IIR G K+VI G NAGKSSL NALA K+ A Sbjct: 182 FLSDGKIAASLNGIIGKLDGVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGKESA 241 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVT+I GTTRDVL + L+G + I DTAG+R+T D VEK GI+R + E+ AD +L + Sbjct: 242 IVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTADTVEKIGIERAWDEIRTADRVLFM 301 Query: 306 KEINSKKEIS-----------FPKNIDFIFIGTKSDLYS---TYTEEYDH---LISSFTG 348 + + + P N+ + K+DL T E H IS+ TG Sbjct: 302 VDGTTTPAVDPHEIWPDFIDRLPNNLGVTVVRNKADLTGEDLAITTEAGHSVYRISAKTG 361 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIA 406 G+++L +KS++ + L + +RHL L +L + L G +++A Sbjct: 362 LGVDDLKQHLKSLMGYQ-SNLEGGFIARRRHLEALDLASSHLLLGKEQLEVYQAG-ELLA 419 Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E LR+ ++L +ITG + LL IFS FCIGK Sbjct: 420 EELRMCQMALSEITGKFTSDDLLGKIFSSFCIGK 453 >gi|190171244|gb|ACE63692.1| ThdF [Escherichia hermannii] Length = 438 Score = 246 bits (627), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 155/438 (35%), Positives = 241/438 (55%), Gaps = 29/438 (6%) Query: 18 SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77 + I+R+SG V + + K P PR A F +D LD+G+ + FP P SFTG Sbjct: 8 GGVGILRISGLKARDVAQAVLGKL-PKPRYADYLPFRDVDNTALDQGIALWFPGPNSFTG 66 Query: 78 EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137 ED E HGG +++ +L+ + +P +R+A PGEFS RAF N K+DL +AE++ADLI + Sbjct: 67 EDVLELQGHGGPVILDLLLKRILTIPGVRIAKPGEFSERAFLNDKLDLAQAEAIADLIDA 126 Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LN 194 +E R ++ + G S+ Q ++ LTH+R ++EA +DF +EE + S ++ LN Sbjct: 127 SSEQAARSALNSLQGAFSTRVNQLVEALTHLRIYVEAAIDFPDEE-IDFLSDGKIEAQLN 185 Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254 D++ D+ + ++ + G ++R G K+VI G NAGKSSL NALA ++ AIVTDI GTT Sbjct: 186 DVM---ADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTT 242 Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314 RDVL + ++G + I DTAG+RE D VE+ GI+R + E+E AD +L + + + Sbjct: 243 RDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAT 302 Query: 315 S-----------FPKNIDFIFIGTKSDLY---STYTEEYDH---LISSFTGEGLEELINK 357 P+ + + K+D+ +E H +S+ TG G++ L + Sbjct: 303 DPAAIWPDFIARLPQKLPITVVRNKADITGEPQGLSEVNGHSLIRLSARTGNGVDVLRDH 362 Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVS 415 +K + + + +RHL L ++LE A L G +++AE LRLA S Sbjct: 363 LKHSMGFD-TNMEGGFLARRRHLQALETAAQHLEQGKAQLLGAWAG-ELLAEELRLAQQS 420 Query: 416 LGKITGCVDVEQLLDIIF 433 L +ITG + LL IF Sbjct: 421 LSEITGEFTSDDLLGRIF 438 >gi|190171184|gb|ACE63662.1| ThdF [Enterobacter asburiae] Length = 439 Score = 246 bits (627), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 153/435 (35%), Positives = 238/435 (54%), Gaps = 23/435 (5%) Query: 18 SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77 + I+R+SG +V E + K P PR A F DG LD+G+ + FP P SFTG Sbjct: 9 GGVGILRISGLKAREVAEAVLGKL-PKPRYADYLPFKDTDGTPLDQGIALWFPGPNSFTG 67 Query: 78 EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137 ED E HGG +++ +L+ + +P LR+A PGEFS RAF N K+DL +AE++ADLI + Sbjct: 68 EDVLELQGHGGPVILDLLLKRILTLPGLRIAKPGEFSERAFLNDKLDLAQAEAIADLIDA 127 Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197 +E R ++ + G S+ ++ LTH+R ++EA +DF +EE + S ++ + Sbjct: 128 SSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE-IDFLSDGKIEAQLN 186 Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257 + D+ + ++ + G ++R G K+VI G NAGKSSL NALA ++ AIVTDI GTTRDV Sbjct: 187 QVMADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDV 246 Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS-- 315 L + ++G + I DTAG+R+ D VE+ GI+R + E+E AD +L + + + + Sbjct: 247 LREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPA 306 Query: 316 ---------FPKNIDFIFIGTKSDLYSTYTEEYD---H---LISSFTGEGLEELINKIKS 360 P + + K+D+ D H +S+ TGEG+++L N +K Sbjct: 307 EIWPDFIARLPAKLPITVVRNKADVTGETLGISDVNGHSLIRLSARTGEGVDDLRNHLKQ 366 Query: 361 ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSLGK 418 + + + +RHL L + +L A L G +++AE LRLA +L + Sbjct: 367 SMGFD-TSMEGGFLARRRHLQALEEAANHLVQGKAQLIGAWAG-ELLAEELRLAQQNLSE 424 Query: 419 ITGCVDVEQLLDIIF 433 ITG + LL IF Sbjct: 425 ITGEFTSDDLLGRIF 439 >gi|190171220|gb|ACE63680.1| ThdF [Enterobacter kobei] Length = 439 Score = 246 bits (627), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 152/435 (34%), Positives = 240/435 (55%), Gaps = 23/435 (5%) Query: 18 SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77 + I+R+SG +V E + K P PR A F DG LD+G+ + FP P SFTG Sbjct: 9 GGVGILRISGLKAREVAEAVLGKL-PKPRYADYLPFKDSDGTPLDQGIALWFPGPNSFTG 67 Query: 78 EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137 ED E HGG +++ +L+ + +P LR+A PGEFS RAF N K+DL +AE++ADLI + Sbjct: 68 EDVLELQGHGGPVILDLLLKRILTLPGLRIAKPGEFSERAFLNDKLDLAQAEAIADLIDA 127 Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197 +E R ++ + G S+ ++ LTH+R ++EA +DF +EE + S ++ + Sbjct: 128 SSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE-IDFLSDGKIEAQLN 186 Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257 + +D+ + ++ + G ++R G K+VI G NAGKSSL NALA ++ AIVTDI GTTRDV Sbjct: 187 QVMSDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDV 246 Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS-- 315 L + ++G + I DTAG+R+ D VE+ GI+R + E+E AD +L + + + + Sbjct: 247 LREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPA 306 Query: 316 ---------FPKNIDFIFIGTKSDLYSTY---TEEYDH---LISSFTGEGLEELINKIKS 360 P + + K+D+ ++ H +S+ TGEG+++L N +K Sbjct: 307 EIWPDFIARLPAKLPITVVRNKADVTGETLGISDVNGHSLIRLSARTGEGVDDLRNHLKQ 366 Query: 361 ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSLGK 418 + + + +RHL L + +L A L G +++AE LRLA +L + Sbjct: 367 SMGFD-TSMEGGFLARRRHLQALEEAANHLVQGKAQLIGAWAG-ELLAEELRLAQQNLSE 424 Query: 419 ITGCVDVEQLLDIIF 433 ITG + LL IF Sbjct: 425 ITGEFTSDDLLGRIF 439 >gi|147679252|ref|YP_001213467.1| tRNA modification GTPase TrmE [Pelotomaculum thermopropionicum SI] gi|189036204|sp|A5CY46|MNME_PELTS RecName: Full=tRNA modification GTPase mnmE gi|146275349|dbj|BAF61098.1| predicted GTPase [Pelotomaculum thermopropionicum SI] Length = 459 Score = 246 bits (627), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 163/458 (35%), Positives = 259/458 (56%), Gaps = 25/458 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCE-FICKKKKPFPRKASLRYFFG----LDGRI 60 +TI A+ST I I+R+SGP +V + F K+K + + S R +G +G I Sbjct: 4 DTIAAISTPIGEGGIGIVRISGPDAVKVAKKFFLTKRKDWDQAGSHRLIYGHVFDREGNI 63 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+ LL +P ++T ED E + HGGI + +LE LA RLA PGEFS+RAF N Sbjct: 64 VDEVLLSFMRAPRTYTREDVVEINCHGGIVPLRKVLE-LALANGARLAEPGEFSKRAFLN 122 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G++DL +AES+ D+I S+TE R+++ + G+LS +L + + +EA++DF E Sbjct: 123 GRLDLAQAESVIDIIRSKTEAGLRVAVSQLRGDLSRKVEDLQGRLLGLLAQVEANIDFPE 182 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 + D++ + +++L L +I + + + G+I R G VI+G N GKSSL NAL Sbjct: 183 D-DLEEATVEDILRSGEDLIEEIKEIVRRAEAGKIYREGISTVIIGRPNVGKSSLLNALL 241 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 +++ AIVTDIPGTTRD++ +++ G +KI DTAG+RET D VE+ G+++ VE AD Sbjct: 242 RENRAIVTDIPGTTRDIIEEYINIRGIPLKIIDTAGLRETGDAVERIGVEKAREAVEQAD 301 Query: 301 LILLLKEIN---SKKEISFPKNI---DFIFIGTKSDLYSTYTEEYDH----------LIS 344 L+LL+ + ++++ + + + IFI K+D+ IS Sbjct: 302 LVLLVLDAARGLTEEDYAIIEKVGGKKVIFIVNKADVREKKISSEGAARIAGGRPVLWIS 361 Query: 345 SFTGEGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGL 402 + G GL++L KI + ++ + I S+ RH + + +L E S ++ + Sbjct: 362 ALEGTGLDKLEEKIVEMVMGGQVYPKDELIISNTRHRMAMERAADHLAEAVSGIRQNVPV 421 Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D++A +LR A SLG+ITG E L+D IF+ FCIGK Sbjct: 422 DVVAIDLRAAWESLGEITGTTVTEDLIDRIFADFCIGK 459 >gi|67459606|ref|YP_247230.1| tRNA modification GTPase TrmE [Rickettsia felis URRWXCal2] gi|75535997|sp|Q4UK70|MNME_RICFE RecName: Full=tRNA modification GTPase mnmE gi|67005139|gb|AAY62065.1| tRNA modification GTPase TrmE [Rickettsia felis URRWXCal2] Length = 480 Score = 246 bits (627), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 165/485 (34%), Positives = 262/485 (54%), Gaps = 56/485 (11%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPR---------------KASL 50 ETIFA S+ + +++ R+SGP +V + + + PR AS Sbjct: 2 ETIFAQSSAFGKAGVAVFRISGPKSLEVLQLLTGRADFKPRIMYYQQITVPKTIVNSASF 61 Query: 51 RY----------------FFGLDGRI-----LDKGLLIVFPSPESFTGEDSAEFHVHGGI 89 Y G I +D +++ F SP SFTGED E H HG Sbjct: 62 AYKEPRVEPITNRRATSDIVSEGGSIDYKELIDNAMVVYFKSPNSFTGEDVVEIHTHGSK 121 Query: 90 AVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEG 149 A+ ++ L + ++RLA GEF++RAF N K DL AE +ADLI++ET MQ R ++ Sbjct: 122 AISIMLINALLNIADIRLAEAGEFTKRAFLNNKFDLTAAEGIADLINAETIMQHRQAIRQ 181 Query: 150 MSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQ 209 SG L LY W +L I S +EA +DF +ED+ + +V N L N+IS++++ Sbjct: 182 ASGGLEELYNNWRTQLLKIISLLEAYIDFP-DEDIPDSVLNDVNNTHKNLVNEISNYLND 240 Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269 + GE++ +G K+ I+G N GKSSL N L ++D+AIV++I GTTRD++ LD+ GY + Sbjct: 241 NRRGELLNSGLKLAIIGPPNVGKSSLLNFLMQRDIAIVSNIAGTTRDIIEGHLDIGGYPI 300 Query: 270 KISDTAGIR-ETDDIVEKEGIKRTFLEVENADLILLL---KEINS--KKEISFPKNIDFI 323 + DTAGIR E+ DI+E+EGIKR + AD+ +++ ++++S ++I N + I Sbjct: 301 ILQDTAGIREESSDIIEQEGIKRAIHSAKTADIKIIMFDAEKLDSSINEDIMNLINENTI 360 Query: 324 FIGTKSDLYS-----TYTEEYDHL-ISSFTGEGLEELINKIKSILSNK--FKKLPFSIPS 375 I K DL + +Y L +S L ++ I++I N F + P+ + Sbjct: 361 TIINKIDLIEPNKIFSIENKYKCLRVSVKNNIALSSILKNIENIAENMAGFTETPYI--T 418 Query: 376 HKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSK 435 ++RH ++L Q + +L SL D L + E++R+ + +G ITG +++E++L IF Sbjct: 419 NQRHRHYLKQALSHLTAFSL---DNDLVLATEDIRMTARCIGAITGVINIEEILGEIFKN 475 Query: 436 FCIGK 440 FCIGK Sbjct: 476 FCIGK 480 >gi|190171236|gb|ACE63688.1| ThdF [Enterobacter radicincitans] Length = 439 Score = 246 bits (627), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 154/436 (35%), Positives = 240/436 (55%), Gaps = 29/436 (6%) Query: 20 ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGED 79 + I+R+SG V + + K P PR A F DG LD+G+ + FP P SFTGED Sbjct: 11 VGILRISGVKARDVAQAVLGKL-PKPRYADYLPFQDADGSALDQGIALWFPGPNSFTGED 69 Query: 80 SAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET 139 E HGG +++ +L+ + +P LR+A PGEFS RAF N K+DL +AE++ADLI + + Sbjct: 70 VLELQGHGGPVILDLLLKRILTLPGLRIARPGEFSERAFLNDKLDLAQAEAIADLIDASS 129 Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LNDI 196 E R ++ + G S+ ++ LTH+R ++EA +DF +EE + S ++ LND+ Sbjct: 130 EQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE-IDFLSDGKIEAQLNDV 188 Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 + D+ + ++ + G ++R G K+VI G NAGKSSL NALA ++ AIVTDI GTTRD Sbjct: 189 I---ADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRD 245 Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS- 315 VL + ++G + I DTAG+RE D VE+ GI+R + E+E AD +L + + + + Sbjct: 246 VLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDP 305 Query: 316 ----------FPKNIDFIFIGTKSDLYST---YTEEYDH---LISSFTGEGLEELINKIK 359 P + + K+D+ ++ +H +S+ TGEG++ L +K Sbjct: 306 AEIWPDFIARLPARLPITVVRNKADVTGEPLGISDVNNHSLVRLSARTGEGVDVLRQHLK 365 Query: 360 SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSLG 417 + + + +RHL L +L+ A L G +++AE LRLA +L Sbjct: 366 QSMGFD-TSMEGGFLARRRHLQALEAAAEHLQQGKAQLLGAWAG-ELLAEELRLAQQNLS 423 Query: 418 KITGCVDVEQLLDIIF 433 +ITG + LL IF Sbjct: 424 EITGEFTSDDLLGRIF 439 >gi|190171256|gb|ACE63698.1| ThdF [Pantoea sp. E147] Length = 439 Score = 245 bits (626), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 153/435 (35%), Positives = 236/435 (54%), Gaps = 23/435 (5%) Query: 18 SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77 + I+R+SG +V + K P PR A F DGR+LD+G+ + FP P SFTG Sbjct: 9 GGVGILRVSGAQAAEVARQLLGKL-PKPRYADYLPFTDSDGRVLDQGIALWFPGPNSFTG 67 Query: 78 EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137 ED E HGG +++ +L+ + +P +R+A PGEFS RAF N K+DL +AE++ADLI + Sbjct: 68 EDVLELQGHGGPVILDLLLKRIVALPGVRIAQPGEFSERAFLNDKLDLAQAEAIADLIDA 127 Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197 +E R ++ + G S+ ++ LTH+R ++EA +DF +EE + S + + Sbjct: 128 SSEQAARSAVNSLQGVFSTRINHLVEALTHLRIYVEAAIDFPDEE-IDFLSDGRIEAQLN 186 Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257 + D+ + ++ + G ++R G K+VI G NAGKSSL NALA +D AIVTDI GTTRDV Sbjct: 187 TVIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGRDAAIVTDIAGTTRDV 246 Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS-- 315 L + ++G + I DTAG+RE D VE+ GI+R + E+E AD +L + + + Sbjct: 247 LREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDATEAA 306 Query: 316 ---------FPKNIDFIFIGTKSDLYS---TYTEEYDH---LISSFTGEGLEELINKIKS 360 P + + K+D+ TE H +S+ T G++EL + +K Sbjct: 307 AIWPDFVSRLPPELPITVVRNKADVTGESLGLTEVNGHSLIRLSARTSAGVDELRDHLKQ 366 Query: 361 ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSLGK 418 + + + +RHL L +L+ A L G +++AE LRLA +L + Sbjct: 367 SMGFA-GDMEGGFLARRRHLQALELAATHLQQGKAQLLGAWAG-ELLAEELRLAQQALSE 424 Query: 419 ITGCVDVEQLLDIIF 433 ITG + LL IF Sbjct: 425 ITGEFTSDDLLGRIF 439 >gi|190171188|gb|ACE63664.1| ThdF [Enterobacter cancerogenus] Length = 439 Score = 245 bits (626), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 152/435 (34%), Positives = 239/435 (54%), Gaps = 23/435 (5%) Query: 18 SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77 + I+R+SG +V E + K P PR A F DG LD+G+ + FP P SFTG Sbjct: 9 GGVGILRISGLKAREVAEAVLGKL-PKPRYADYLPFKDSDGTPLDQGIALWFPGPNSFTG 67 Query: 78 EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137 ED E HGG +++ +L+ + +P LR+A PGEFS RAF N K+DL +AE++ADLI + Sbjct: 68 EDVLELQGHGGPVILDLLLKRILTLPGLRIAKPGEFSERAFLNDKLDLAQAEAIADLIDA 127 Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197 +E R ++ + G S+ ++ LTH+R ++EA +DF +EE + S ++ + Sbjct: 128 SSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE-IDFLSDGKIEAQLN 186 Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257 + D+ + ++ + G ++R G K+VI G NAGKSSL NALA ++ AIVTDI GTTRDV Sbjct: 187 EVMKDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDV 246 Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS-- 315 L + ++G + I DTAG+R+ D VE+ GI+R + E+E AD +L + + + + Sbjct: 247 LREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPA 306 Query: 316 ---------FPKNIDFIFIGTKSDLYSTY---TEEYDH---LISSFTGEGLEELINKIKS 360 P + + K+D+ ++ H +S+ TGEG+++L N +K Sbjct: 307 DIWPDFIARLPAKLPITVVRNKADVTGETLGISDVNGHSLIRLSARTGEGVDDLRNHLKQ 366 Query: 361 ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSLGK 418 + + + +RHL L + +L A L G +++AE LRLA +L + Sbjct: 367 SMGFD-TSMEGGFLARRRHLQALEEAANHLVQGKAQLIGAWAG-ELLAEELRLAQQNLSE 424 Query: 419 ITGCVDVEQLLDIIF 433 ITG + LL IF Sbjct: 425 ITGEFTSDDLLGRIF 439 >gi|254468542|ref|ZP_05081948.1| tRNA modification GTPase TrmE [beta proteobacterium KB13] gi|207087352|gb|EDZ64635.1| tRNA modification GTPase TrmE [beta proteobacterium KB13] Length = 453 Score = 245 bits (626), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 160/436 (36%), Positives = 242/436 (55%), Gaps = 20/436 (4%) Query: 19 AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGE 78 + +IR+SGP+ F + I +A F+ +G++LDKGLLI F P+SFTGE Sbjct: 24 GVGVIRISGPAAFTIAHQITHLDSIDSHRAQFTSFYSNEGQLLDKGLLIGFKGPKSFTGE 83 Query: 79 DSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSE 138 D AEF +HGG A++ +LEE M R+A PGEF+ RAF N K+DL +AE++AD+I++ Sbjct: 84 DVAEFQLHGGPALLQSLLEEALSM-GARMAKPGEFTYRAFLNNKLDLTQAEAVADIINAS 142 Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILF 198 T+ + + G S + KL IR +IEA LDF EEE + ++ + I Sbjct: 143 TKSAVINAANSLKGNFSLQINNLLKKLIDIRMYIEACLDFPEEE-IDFIEKGQIKSKIQS 201 Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 ++ I G++I++G+++ ++G N GKS+L N ++++VAIVT++PGTTRD + Sbjct: 202 IQQAIIVLQETAAKGQMIQDGFQVCLVGKPNVGKSTLMNLFSQEEVAIVTNVPGTTRDPV 261 Query: 259 TIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK 318 + L+G + DTAGIRET+DIVE+ GIK+T + + L+L+L E + + + Sbjct: 262 RASIALKGVPLNFVDTAGIRETEDIVEQAGIKKTREIISRSALVLVLLESLDEADDYLKQ 321 Query: 319 NI-----DFIFIGTKSDLYSTYTEEYDH------LISSFTGEGLEELINKI-KSILSNKF 366 NI + I++ K DL + D+ IS+ G GL+ L I +S N Sbjct: 322 NILQDECNVIWLLNKIDLNNEPPHVTDYAGQPLVAISAKCGTGLDLLEEHILQSFGLNHL 381 Query: 367 KKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLASVSLGKITGCVD 424 + S +RHL L Q +L A LN+ +++AE L LA + ITG Sbjct: 382 EANEQLFSSRQRHLEALKQIDHHLNTALDQLNQP----ELVAEELTLAQKEMSGITGEFS 437 Query: 425 VEQLLDIIFSKFCIGK 440 E LL IFS+FCIGK Sbjct: 438 TEDLLGEIFSRFCIGK 453 >gi|119475232|ref|ZP_01615585.1| tRNA modification GTPase [marine gamma proteobacterium HTCC2143] gi|119451435|gb|EAW32668.1| tRNA modification GTPase [marine gamma proteobacterium HTCC2143] Length = 465 Score = 245 bits (626), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 159/466 (34%), Positives = 253/466 (54%), Gaps = 34/466 (7%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDG----- 58 + +TI A++T + I+R+SGP+ + I + PR AS F+ + Sbjct: 5 DTDTIVAIATAPGRGGVGIVRVSGPNSKAIASLITDSQLA-PRYASYGAFYEANSTINTR 63 Query: 59 --RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 R++D GL + FP P SFTGED E HGG +++ +L E+ K+ RLA PGEFS R Sbjct: 64 SDRVIDYGLTLFFPGPNSFTGEDVLELQAHGGPVILDYLLSEIIKL-GARLARPGEFSER 122 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF N K+DL +AE++ADLI S + R ++ + G+ S + + ++R ++EA + Sbjct: 123 AFLNNKMDLTQAEAIADLIDSASLQAARNAVRSLQGQFSKKIMSLVSAVVNLRVYVEAAI 182 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 DF EEE + + +V +D+ + N ++ S+ K G +++ G +VI G NAGKSSL Sbjct: 183 DFPEEE-IDFLADGKVSSDLDTILNQLNRVFSEAKQGSLVQEGMTVVIAGKPNAGKSSLL 241 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 NAL+ +D AIVT+I GTTRDVL + ++G + I DTAG+R++ DI+E+EGI+R + E+ Sbjct: 242 NALSGRDSAIVTEIEGTTRDVLREHIQIDGMPLHIIDTAGLRDSPDIIEQEGIRRAWEEI 301 Query: 297 ENADLILLLKEINSKKEISFPKNI---------------DFIFIGTKSDLYSTYTE--EY 339 AD ILL+ + + +EI K I + + K+DL E E Sbjct: 302 NRADRILLVVDSTTSREIDPVKLIGDLGPDISSKLSSLANVTIVHNKADLSGQAVEIVEA 361 Query: 340 DHLISSFTG---EGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL 395 + + + + +G+E L +K+ + + + F+ + +RHL L+ L Sbjct: 362 EQTLITLSAKDDQGIELLRQHLKACMGYDGAGEGGFT--ARRRHLDALTNAQEALHAGQQ 419 Query: 396 NEKDCGL-DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G +++AE+LR +L +ITG + LL IFS FCIGK Sbjct: 420 QLLSYGAGELLAEDLRHCQNALSEITGEFSSDDLLGEIFSSFCIGK 465 >gi|332187013|ref|ZP_08388754.1| small GTP-binding domain protein [Sphingomonas sp. S17] gi|332013023|gb|EGI55087.1| small GTP-binding domain protein [Sphingomonas sp. S17] Length = 428 Score = 245 bits (626), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 149/445 (33%), Positives = 238/445 (53%), Gaps = 29/445 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TIFAVS+G P+AI++IR+SGP F E + + P PR+A LR G LD L Sbjct: 3 DTIFAVSSGQPPAAIAVIRVSGPQAFAATERLAGRL-PKPRRAGLRRLRDAAGETLDSAL 61 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 ++ FP P + TGED E H HGG AVV + LA P +R A PGEF+RRA +G+IDL Sbjct: 62 VLSFPGPATATGEDLVELHCHGGRAVVAAVEGALAAQPGVRHAEPGEFTRRALTHGRIDL 121 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 EAE LADL+ ++TE QRR ++ + G++S W+D+ + + IEA LDF+EE+DV Sbjct: 122 AEAEGLADLLEAQTERQRRAAIGAVEGQVSQALRGWMDRTATLSAAIEAMLDFAEEDDVP 181 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIR-------NGYKIVILGHSNAGKSSLFNA 238 ++ + ++ ++ ++Q L + R +G ++V+ G N+GKS+L N Sbjct: 182 LDAAA-----LAGIRGEMDG-LAQAMLEVVDRPPVDRLHDGIRVVLAGPPNSGKSTLLNL 235 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEVE 297 L +++ AIV+ I GTTRD + + G ++DTAG+ E TDD++E GI R ++ Sbjct: 236 LTEREAAIVSPIAGTTRDRIEASVLRGGIAYVLTDTAGLAEDTDDVIEAIGITRAQEAID 295 Query: 298 NADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINK 357 AD++L L + +E D +++ +++D+ ++ +G I Sbjct: 296 QADILLWLADTPPPRE-------DALWLHSRADVPGREGLPAGRQLAVRRDDGAS--IAA 346 Query: 358 IKSILSNKFKKLPFSIPSHKRHLY--HLSQTVRYLEMASLNEKDCGLDIIAENLRLASVS 415 + ++ + L +P + H R A L ++AE LR+A + Sbjct: 347 LWHAVAERAASL---LPREDAVGFKRHQQDQCRLAAQALLAAPKADALLMAEELRVARQA 403 Query: 416 LGKITGCVDVEQLLDIIFSKFCIGK 440 L + G E +LD +F +FC+GK Sbjct: 404 LAGLLGVSATETMLDALFGRFCLGK 428 >gi|330827243|ref|YP_004390546.1| tRNA modification GTPase mnmE [Alicycliphilus denitrificans K601] gi|329312615|gb|AEB87030.1| tRNA modification GTPase mnmE [Alicycliphilus denitrificans K601] Length = 465 Score = 245 bits (626), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 161/467 (34%), Positives = 238/467 (50%), Gaps = 30/467 (6%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 + ++ I A++T A+ I+R+SG + + + PR+A F GR Sbjct: 2 LARHQDPIAAIATAPGRGAVGIVRVSGRGLAPFVQGLLGRSLQ-PRQAHYLPFPDAAGRS 60 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEEL-----AKMPNLRLANPGEFSR 115 +D+GL + FP+P S+TGED E HGG V+ +L A +P LRLA PGEF+ Sbjct: 61 IDQGLALFFPAPHSYTGEDVLELQAHGGPVVLQLLLARCLEAAQAVLPRLRLAEPGEFTE 120 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF N K+DL +AE++ADLI + TE R + +SG S D L H+R +EA Sbjct: 121 RAFLNDKLDLAQAEAIADLIDASTEAAARSAGRSLSGAFSQEIHGLRDALVHLRMLVEAT 180 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 LDF EEE + + + L+ +++ + + G ++R G K+VI G NAGKSSL Sbjct: 181 LDFPEEE-IDFLRKADARGQLSNLQQTLAAVMQRASQGALLREGIKVVIAGQPNAGKSSL 239 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 NALA ++AIVT I GTTRD + + +EG + I DTAG+RE+ D VE+ GI R + E Sbjct: 240 LNALAGAELAIVTPIAGTTRDKVQQTIQIEGVPLHIIDTAGLRESADEVERIGIARAWDE 299 Query: 296 VENADLILLLKE---------------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD 340 + AD +L L + I S +++ I + K+D + Sbjct: 300 ITQADAVLFLHDLTRLDAPEYIAADALIASTLVQKLSESVPVIDVWNKTDAAARPAPAAT 359 Query: 341 HL-----ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL--EMA 393 +S+ TG+GL+ L ++ + + I + RH+ L +L A Sbjct: 360 AGRAAVQLSARTGQGLDALRRELLRVAGWQSAAEGVYI-ARARHIEALRAVDAHLMEAAA 418 Query: 394 SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L LD++AE LRLA +L ITG + LL +IFS FCIGK Sbjct: 419 QLESTGPALDLLAEELRLAQNALNAITGEFTSDDLLGVIFSSFCIGK 465 >gi|326386157|ref|ZP_08207781.1| tRNA modification GTPase TrmE [Novosphingobium nitrogenifigens DSM 19370] gi|326209382|gb|EGD60175.1| tRNA modification GTPase TrmE [Novosphingobium nitrogenifigens DSM 19370] Length = 432 Score = 245 bits (626), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 172/445 (38%), Positives = 240/445 (53%), Gaps = 26/445 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD-GRILDKG 64 +TIFA+S+G LP+AI ++R+SGP E + + P PR+A + D G +LD+ Sbjct: 4 DTIFALSSGQLPAAIGVMRISGPQAGLALERLAGRL-PSPRRAGVAALRHPDHGEVLDRT 62 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 L++ P P + TGED AE H+HGG AV + E L + LR A PGEF+RRAF NG+ID Sbjct: 63 LVLWLPGPHNATGEDCAELHLHGGRAVAAAVEEALLAL-GLRRAEPGEFTRRAFANGRID 121 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L EAE LADL+ +ETE+QRR + G LS W+ L + + +EA LDF++E DV Sbjct: 122 LAEAEGLADLLEAETELQRRSAQAMAGGALSRAVESWLQTLLGLSARLEASLDFADEGDV 181 Query: 185 QNFSSKEVLN---DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 + + + L +D+ +S+ + E +R GY++V+ G NAGKS+LFNAL + Sbjct: 182 DDGEATLPVGFGEACTRLVDDLGEWLSRPR-AEPLREGYRVVLAGPPNAGKSTLFNALVE 240 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD-DIVEKEGIKRTFLEVENAD 300 + AI++ PGTTRDVL + L G DTAG+RE VE GI R E E AD Sbjct: 241 SEAAIISAEPGTTRDVLVQGVALAGVPFSFVDTAGLREEGVGAVEAIGIARARAEAERAD 300 Query: 301 LILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL-ISSFTGEGL----EELI 355 L+L L E P+ I + D + +S+ TGEGL E L+ Sbjct: 301 LVLWL-----GPEGEGPQGPHVWEIAAQCDREDQAAKIAPMFRVSARTGEGLGTLREALV 355 Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVS 415 + +S + P ++R L Q L A L E+D L AE LRLA + Sbjct: 356 ERARSAMPA-----PGQAALNRRQHDLLDQAQAALRSACL-ERDPLL--AAECLRLARQA 407 Query: 416 LGKITGCVDVEQLLDIIFSKFCIGK 440 +TG D E +LD +F +FCIGK Sbjct: 408 FDALTGRADTEAMLDALFGRFCIGK 432 >gi|190171228|gb|ACE63684.1| ThdF [Enterobacter pulveris] gi|190171232|gb|ACE63686.1| ThdF [Enterobacter pulveris] Length = 439 Score = 245 bits (626), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 153/434 (35%), Positives = 239/434 (55%), Gaps = 23/434 (5%) Query: 19 AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGE 78 + I+R+SG V + + K P PR A F D LD+G+ + FP P SFTGE Sbjct: 10 GVGILRISGKLARDVAQAVLGKL-PKPRYADYLPFKDSDNTPLDQGIALWFPGPNSFTGE 68 Query: 79 DSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSE 138 D E HGG +++ +L+ + +P +R+A PGEFS RAF N K+DL +AE++ADLI + Sbjct: 69 DVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAEAIADLIDAS 128 Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILF 198 +E R ++ + G S+ ++ LTH+R F+EA +DF +EE + S ++ + Sbjct: 129 SEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEE-IDFLSDGKIEAQLNT 187 Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 + D+ + ++ + G ++R G K+VI G NAGKSSL NALA ++ AIVTDI GTTRDVL Sbjct: 188 VIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVL 247 Query: 259 TIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS--- 315 + ++G + I DTAG+RE D VE+ GI+R + E+E AD +L + + + + Sbjct: 248 REHIHIDGMPLHIIDTAGLREASDEVERIGIERAWKEIEQADRVLFMVDGTTTDAVDPAQ 307 Query: 316 --------FPKNIDFIFIGTKSDLYST---YTEEYDH---LISSFTGEGLEELINKIKSI 361 P+ + + K+D+ TE H +S+ +G+G+E L + +KS Sbjct: 308 IWPDFMARLPQTLPITVVRNKADVTGEAPGLTEVNGHSLIRLSARSGDGVEVLRDHLKSS 367 Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSLGKI 419 + + + +RHL L + +L+ A L G +++AE LRLA SL +I Sbjct: 368 MGFD-TNMEGGFLARRRHLQALEEAAAHLQQGKAQLLGAWAG-ELLAEELRLAQQSLSEI 425 Query: 420 TGCVDVEQLLDIIF 433 TG + LL IF Sbjct: 426 TGEFTSDDLLGRIF 439 >gi|190171194|gb|ACE63667.1| ThdF [Enterobacter cowanii] Length = 439 Score = 245 bits (625), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 154/436 (35%), Positives = 240/436 (55%), Gaps = 29/436 (6%) Query: 20 ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGED 79 + I+R+SG V + + K P PR A F DG LD+G+ + FP P SFTGED Sbjct: 11 VGILRISGLKARDVAQAVLGKL-PKPRYADYLAFQDADGSALDQGIALWFPGPNSFTGED 69 Query: 80 SAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET 139 E HGG +++ +L+ + +P LR+A PGEFS RAF N K+DL +AE++ADLI + + Sbjct: 70 VLELQGHGGPVILDLLLKRILTLPGLRIAKPGEFSERAFLNDKLDLAQAEAIADLIDASS 129 Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LNDI 196 E R ++ + G S+ ++ LTH+R ++EA +DF +EE + S ++ LN++ Sbjct: 130 EQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE-IDFLSDGKIEAQLNNV 188 Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 + +D+ + ++ + G ++R G K+VI G NAGKSSL NALA ++ AIVTDI GTTRD Sbjct: 189 I---SDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRD 245 Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS- 315 VL + ++G + I DTAG+RE D VE+ GI+R + E+E AD +L + + + + Sbjct: 246 VLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDP 305 Query: 316 ----------FPKNIDFIFIGTKSDLYSTY---TEEYDH---LISSFTGEGLEELINKIK 359 P + + K+D+ +E +H +S+ T EG++ L +K Sbjct: 306 ADIWPDFIARLPAKLPITVVRNKADVTGEQPGISEVNNHSLVRLSARTNEGVDVLRQHLK 365 Query: 360 SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSLG 417 + + + +RHL L +L+ A L G +++AE LRLA SL Sbjct: 366 QSMGFD-TSMEGGFLARRRHLQALEMAAEHLQQGKAQLLGAWAG-ELLAEELRLAQQSLS 423 Query: 418 KITGCVDVEQLLDIIF 433 +ITG + LL IF Sbjct: 424 EITGEFTSDDLLGRIF 439 >gi|321313663|ref|YP_004205950.1| tRNA modification GTPase TrmE [Bacillus subtilis BSn5] gi|291486741|dbj|BAI87816.1| tRNA modification GTPase TrmE [Bacillus subtilis subsp. natto BEST195] gi|320019937|gb|ADV94923.1| tRNA modification GTPase TrmE [Bacillus subtilis BSn5] Length = 459 Score = 245 bits (625), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 164/461 (35%), Positives = 260/461 (56%), Gaps = 29/461 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK--KKKPFPRKASLRYFFG-----LDG 58 +TI A+ST AI+I+RLSGP Q+ + I K K K S +G Sbjct: 2 DTIAAISTPMGEGAIAIVRLSGPEAIQIADKIYKGPKGKTLSSVESHTIHYGHIVDRPSD 61 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 R++++ ++ V +P +FT ED E + HGGI VN +L+ LA RLA PGEF++RAF Sbjct: 62 RVVEEVMVSVLKAPRTFTREDVIEINCHGGIVTVNQVLQ-LALREGARLAEPGEFTKRAF 120 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG+IDL +AE++ DLI ++T+ ++M M G LS+L + ++ + +E ++D+ Sbjct: 121 LNGRIDLSQAEAVMDLIRAKTDRAMNVAMNQMEGRLSALVRRLRSEILETLAHVEVNIDY 180 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E +DV+ + + ++ +K +I + + + G+I+R G VI+G N GKSSL N+ Sbjct: 181 PEYDDVEEMTHQILVEKATAVKKEIEALLRTSEQGKILREGLSTVIIGRPNVGKSSLLNS 240 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L + AIVTDIPGTTRDV+ +++ G +++ DTAGIRET+DIVE+ G++R+ ++ Sbjct: 241 LVHEAKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDIVERIGVERSRQVLKE 300 Query: 299 ADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTY-TEEYDHL------- 342 ADLILL+ +N +E+S + +D I I K+DL + TE L Sbjct: 301 ADLILLV--LNYSEELSEEDVKLFEAVEGMDVIVILNKTDLEAKIDTERVRELANGRPVV 358 Query: 343 -ISSFTGEGLEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKD 399 S EG+ +L I+S+ + + + S+ RH+ L Q R +E A S E+D Sbjct: 359 TTSLLKEEGINDLEEAIQSLFYTGAIESGDLTYVSNTRHISILQQAKRAIEDALSGIEQD 418 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+I G E L+D +FS+FC+GK Sbjct: 419 VPIDMVQIDLTRCWELLGEIIGDSVHESLIDQLFSQFCLGK 459 >gi|190171224|gb|ACE63682.1| ThdF [Enterobacter pulveris] gi|190171234|gb|ACE63687.1| ThdF [Enterobacter pulveris] Length = 439 Score = 245 bits (625), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 153/433 (35%), Positives = 239/433 (55%), Gaps = 23/433 (5%) Query: 20 ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGED 79 + I+R+SG V + + K P PR A F D LD+G+ + FP P SFTGED Sbjct: 11 VGILRISGKLARDVAQAVLGKL-PKPRYADYLPFKDSDNTPLDQGIALWFPGPNSFTGED 69 Query: 80 SAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET 139 E HGG +++ +L+ + +P +R+A PGEFS RAF N K+DL +AE++ADLI + + Sbjct: 70 VLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAEAIADLIDASS 129 Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFL 199 E R ++ + G S+ ++ LTH+R F+EA +DF +EE + S ++ + + Sbjct: 130 EQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEE-IDFLSDGKIEAQLNTV 188 Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259 D+ + ++ + G ++R G K+VI G NAGKSSL NALA ++ AIVTDI GTTRDVL Sbjct: 189 IADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLR 248 Query: 260 IDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS---- 315 + ++G + I DTAG+RE D VE+ GI+R + E+E AD +L + + + + Sbjct: 249 EHIHIDGMPLHIIDTAGLREASDEVERIGIERAWKEIEQADRVLFMVDGTTTDAVDPAQI 308 Query: 316 -------FPKNIDFIFIGTKSDLYST---YTEEYDH---LISSFTGEGLEELINKIKSIL 362 P+ + + K+D+ TE H +S+ +G+G+E L + +KS + Sbjct: 309 WPDFMARLPQTLPITVVRNKADVTGEAPGLTEVNGHSLIRLSARSGDGVEVLRDHLKSSM 368 Query: 363 SNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSLGKIT 420 + + +RHL L + +L+ A L G +++AE LRLA SL +IT Sbjct: 369 GFD-TNMEGGFLARRRHLQALEEAAAHLQQGKAQLLGAWAG-ELLAEELRLAQQSLSEIT 426 Query: 421 GCVDVEQLLDIIF 433 G + LL IF Sbjct: 427 GEFTSDDLLGRIF 439 >gi|68472595|ref|XP_719616.1| potential mitochondrial tRNA modification protein [Candida albicans SC5314] gi|68472852|ref|XP_719491.1| potential mitochondrial tRNA modification protein [Candida albicans SC5314] gi|46441310|gb|EAL00608.1| potential mitochondrial tRNA modification protein [Candida albicans SC5314] gi|46441440|gb|EAL00737.1| potential mitochondrial tRNA modification protein [Candida albicans SC5314] Length = 529 Score = 245 bits (625), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 165/488 (33%), Positives = 272/488 (55%), Gaps = 54/488 (11%) Query: 2 NHEKETIFAVSTGALPSAISIIRLSGP-SCFQVCEFICKKKKPFPRKASLRYFFGLDGR- 59 N K T+FA+ST SAI+++R+SGP S + + K P R AS+R + + Sbjct: 47 NPLKPTVFALSTKFGKSAIAVVRISGPQSKYIYHKLTNSTKPPKNRIASVRKLYSPEPHS 106 Query: 60 -----ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKM--PN----LRLA 108 LD+ L + P P+++TGED E H+HGG+A++ +L+ + K+ PN +R A Sbjct: 107 NKKSVFLDEALTLFLPGPKTYTGEDLLELHLHGGVAIIKSVLQSIKKLHDPNNGVIIRQA 166 Query: 109 NPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHI 168 + GEFS++AF NG++DL E E + D+I++ETE QR S+ SG+ + +W +++ + Sbjct: 167 DRGEFSKQAFYNGRLDLTELEGINDMINAETESQRLASLASSSGQTKIEFMKWRNEIINQ 226 Query: 169 RSFIEADLDFSEEEDVQNFSS--KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILG 226 + + +DF E+ D++ ++V +I ++++I +++S+ K +I+ NG ++ +LG Sbjct: 227 MANLTMIIDFGEDHDIEETDRMIRDVKENIAKIESEIKAYLSKVKSSQILLNGIQLALLG 286 Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--ETDDIV 284 NAGKSS+ N LA KD AIV++I GTTRD+L I L++ GY V + DTAGIR E D + Sbjct: 287 PPNAGKSSILNILANKDAAIVSEIAGTTRDILDIPLEIGGYKVVVGDTAGIRSFEEADSI 346 Query: 285 EKEGIKRTFLEVENAD-LILLLKEINSKKE---------ISFPKNIDFIFIGTKSDLYST 334 E+EGIKR AD +I++L ++ +KE N + + K DL+++ Sbjct: 347 EQEGIKRAKQRSMLADFVIVVLDPMSVEKEPLELKEHLKTLVKANKQMLIVLNKQDLFAS 406 Query: 335 YTEE--------------YDHLISSFTGEGLEELINKIKSILSNKFKKL-------PFSI 373 +EE Y H++S TG G++ L + +L KFK L P + Sbjct: 407 RSEEMISNYSRLLDLPKNYFHVVSCSTGSGIDNL----QKLLIEKFKDLSQSETSNPIIV 462 Query: 374 PSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITG-CVDVEQLLDII 432 S + + + E + + L + + LR + +GKITG +D+E++LD++ Sbjct: 463 SSRVQDILENDILFGFKEFYHWADAEDVL-VATDCLRQSVDGIGKITGQSIDLEEILDVV 521 Query: 433 FSKFCIGK 440 FS FCIGK Sbjct: 522 FSSFCIGK 529 >gi|50547191|ref|XP_501065.1| YALI0B18612p [Yarrowia lipolytica] gi|49646931|emb|CAG83318.1| YALI0B18612p [Yarrowia lipolytica] Length = 481 Score = 245 bits (625), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 175/484 (36%), Positives = 268/484 (55%), Gaps = 48/484 (9%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRK----ASLRYFFGL 56 + + K TI+A+S+ + +A+SIIR+SGP V + + + K P + A+L+ F Sbjct: 2 LRNTKSTIYALSSASGRAAVSIIRVSGPDTSTVYKQLTNRTKTPPHRVATLATLKQPFSN 61 Query: 57 DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKM-PN----LRLANPG 111 ++LD L + F P+S++GED E HVHGG AVV +L+ + ++ P+ +R A PG Sbjct: 62 PPKVLDHALTLFFNGPKSYSGEDLLELHVHGGPAVVRAVLDSIQRVKPSSGVPIRYAEPG 121 Query: 112 EFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSF 171 EFS+RAF NGK+D+ + E + +I +ETE QR+ S+E SG +Y W + + + Sbjct: 122 EFSKRAFYNGKLDMTQIEGIGSMIEAETESQRQASLEASSGHSKKVYEAWREGIVENMAL 181 Query: 172 IEADLDFSEEEDVQNFSSKEVL-----NDILFLKNDISSHISQGKLGEIIRNGYKIVILG 226 + A +DFS+ D Q S EVL ++ L DI +H++Q + EI+R+G + +LG Sbjct: 182 LTALIDFSD--DNQGIDSGEVLVGKTKENVGRLLKDIKNHLAQVQRSEILRSGIVMSLLG 239 Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--ETDDIV 284 NAGKSSL N LAK++ AIV++ GTTRDV+ I LD+ GY V + DTAG+R E +V Sbjct: 240 APNAGKSSLLNILAKRNAAIVSEEAGTTRDVVEIGLDVAGYKVVLGDTAGLRGGEQVGMV 299 Query: 285 EKEGIKRTFLEVE----------------NADLILLLKEIN-SKKEISFPKNI-----DF 322 EKEGIKR + ++D+I LK+++ ++K+I N D Sbjct: 300 EKEGIKRARERFQKSHMIMAVLPADGCDHSSDIIAELKQLHAAEKQIVVAINKTDLVEDH 359 Query: 323 IFIGTKSDLYSTYTEEYDHLI--SSFTGEGLEELINKIKSILSNKFKKLPFSIP--SHKR 378 + K+ L D +I S GLE L+ K+ S S K + S P + +R Sbjct: 360 VVEAFKNRLMEEIGLPRDSIIPVSCIASSGLETLLAKLSSEFS-KITTIEGSDPVLASQR 418 Query: 379 HLYHLSQTVRYLEMASLNEKDCGLDIIA-ENLRLASVSLGKITG-CVDVEQLLDIIFSKF 436 +L TV + + E D + A E LR+A+ +G ITG + +E++L +FSKF Sbjct: 419 VKDNLIATV-IPALETFMEYDLEAVVFATEELRMAAEGIGMITGQGIGIEEVLGAVFSKF 477 Query: 437 CIGK 440 CIGK Sbjct: 478 CIGK 481 >gi|257455160|ref|ZP_05620398.1| tRNA modification GTPase TrmE [Enhydrobacter aerosaccus SK60] gi|257447493|gb|EEV22498.1| tRNA modification GTPase TrmE [Enhydrobacter aerosaccus SK60] Length = 463 Score = 244 bits (624), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 161/460 (35%), Positives = 257/460 (55%), Gaps = 34/460 (7%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66 TI A++T + +IRLSGP+ +Q+ + ++ PR A F+ D ++D+GL+ Sbjct: 12 TIAAIATPIGRGGVGVIRLSGPNSYQIALALTGRQAFKPRFAHFCRFYDSDDTVIDEGLV 71 Query: 67 IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126 + FP+P SFTGED E HGG+ + +L + ++ A GEFS RAF+N K+DL+ Sbjct: 72 LYFPAPHSFTGEDVIELQGHGGMILQQQLLTRVFEL-GANQAVAGEFSARAFDNDKLDLV 130 Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186 +AE++AD I + + + +M ++GE S +++L +R ++EA +DF +EE V Sbjct: 131 QAEAIADAIDATSVAAAKSAMRSLTGEFSQKINALLEQLIQLRLYVEAAIDFPDEEGVDF 190 Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246 + + + + + +++ ++ K G+++R+G +VI G NAGKSSL N LA ++ AI Sbjct: 191 LADEHIAKQLRQVCEQLNNVLATAKQGQLLRDGVSVVIAGRPNAGKSSLLNRLAGQERAI 250 Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306 VTDI GTTRD+L + L G + ++DTAG+R+TDDIVE+ GI+R + ADL+L++ Sbjct: 251 VTDIAGTTRDILQETIVLNGLTLNLTDTAGLRQTDDIVEQAGIERARQAITQADLLLMVY 310 Query: 307 EINSKKEI---------SFPKNIDFIFIGTKSDL----------YSTYTEEYDHL-ISSF 346 + + + E S P + I K DL +S+ + Y + +S Sbjct: 311 DAHREHEPLRLATELFGSLPNANSILMIANKIDLSDNHQNLPKQFSSQEQIYHPVYVSCK 370 Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL---- 402 GLEEL+N+I + F S+ + RHL L +T +MA L E D L Sbjct: 371 YDTGLEELVNQICDKVG--FHPPENSLIARTRHLDALRRT----QMA-LQEADEQLHLFH 423 Query: 403 --DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE+LR A +SL +ITG + LL IF FCIGK Sbjct: 424 AGELVAESLRQAQISLNEITGEFTADDLLGKIFGSFCIGK 463 >gi|296330032|ref|ZP_06872516.1| tRNA modification GTPase TrmE [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305676756|ref|YP_003868428.1| tRNA modification GTPase [Bacillus subtilis subsp. spizizenii str. W23] gi|296153071|gb|EFG93936.1| tRNA modification GTPase TrmE [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305415000|gb|ADM40119.1| tRNA modification GTPase [Bacillus subtilis subsp. spizizenii str. W23] Length = 459 Score = 244 bits (624), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 161/461 (34%), Positives = 260/461 (56%), Gaps = 29/461 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK--KKKPFPRKASLRYFFG-----LDG 58 +TI A+ST AI+I+RLSGP Q+ + I K K K S +G Sbjct: 2 DTIAAISTPMGEGAIAIVRLSGPEAIQIADKIYKGPKGKTLSSVESHTIHYGHIVDRPSD 61 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 R++++ ++ V +P +FT ED E + HGGI VN +L+ LA RLA PGEF++RAF Sbjct: 62 RVVEEVMVSVLKAPRTFTREDVIEINCHGGIVTVNQVLQ-LALREGARLAEPGEFTKRAF 120 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG+IDL +AE++ DLI ++T+ ++M M G LS+L + ++ + +E ++D+ Sbjct: 121 LNGRIDLSQAEAVMDLIRAKTDRAMNVAMNQMEGRLSALVRRLRSEILETLAHVEVNIDY 180 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E +DV+ + + ++ +K +I + + + G+I+R G VI+G N GKSSL N+ Sbjct: 181 PEYDDVEEMTHQLLVEKATAVKKEIEALLRTSEQGKILREGLSTVIIGRPNVGKSSLLNS 240 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L + AIVTDIPGTTRDV+ +++ G +++ DTAGIRET+DIVE+ G++R+ ++ Sbjct: 241 LVHEAKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDIVERIGVERSRQVLKE 300 Query: 299 ADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTYTEEYDHLISS----- 345 ADLILL+ +N +E+S + +D I I K+DL + E +++ Sbjct: 301 ADLILLV--LNYSEELSEEDVKLFEAVEGMDVIVIMNKTDLEAKIDSERVRELANGRPVV 358 Query: 346 ----FTGEGLEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKD 399 EG+ +L I+S+ + + + S+ RH+ L Q R +E A S E+D Sbjct: 359 TTSLLKEEGINDLEEAIQSLFYTGAIESGDLTYVSNTRHISILQQAKRAIEDALSGIEQD 418 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+I G E L+D +FS+FC+GK Sbjct: 419 VPIDMVQIDLTRCWELLGEIIGDSVHESLIDQLFSQFCLGK 459 >gi|296137607|ref|YP_003644849.1| tRNA modification GTPase TrmE [Thiomonas intermedia K12] gi|295797729|gb|ADG32519.1| tRNA modification GTPase TrmE [Thiomonas intermedia K12] Length = 472 Score = 244 bits (624), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 162/472 (34%), Positives = 253/472 (53%), Gaps = 35/472 (7%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 + + + I A++T A+ I+R SG S + + I + PR A+ F G + Sbjct: 4 LAQDADPIVAIATAPGRGAVGIVRASGKSLGALAQAITGRAL-LPRHATYLPFGDGQGGV 62 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEEL---AKMPNLRLANPGEFSRRA 117 +D+GL + FP+P S+TGED E +HGG V+ +L L LR+A PGEF+RRA Sbjct: 63 IDRGLALFFPAPHSYTGEDVLELQIHGGPVVLQLLLARLLELGASSRLRVAQPGEFTRRA 122 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NGK+DL +AES+ADLI + TE R + ++GELS +L +R +EA LD Sbjct: 123 FLNGKLDLAQAESVADLIEASTEAAARSATRALAGELSQAVRALAAELVELRLLVEATLD 182 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 F EE D+ + + L+ + ++ + G ++R G ++V+ G N GKSSL N Sbjct: 183 FPEE-DIDFLRQAQAQRRLQALQQTLQQVQAKTRQGALLREGLQVVLAGQPNVGKSSLLN 241 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 ALA ++AIVT I GTTRD ++ + +EG + I DTAG+R++ D VE+ G++R++ + Sbjct: 242 ALAGAELAIVTPIAGTTRDKVSQTIQIEGVPLHIVDTAGLRDSADAVERIGVERSWHAIA 301 Query: 298 NADLILLLKEI---------NSKKEIS--FPKNIDFIFIGTKSD-------------LYS 333 AD+++ L ++ ++ EI+ PK + + K D +++ Sbjct: 302 GADVVVFLHDLTRLQAPGYAQAEAEIARGLPKGAPLLHVFNKRDCVETGAQARLLPQVWA 361 Query: 334 TYTEEYDH--LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391 + E IS+ TG+GL+ L K+ + + I + +RH+ L QT ++L Sbjct: 362 QWGVEAGESVWISAATGDGLQGLRLKLLQLAGAQPTSEGVFI-ARQRHVQALEQTGQHLG 420 Query: 392 MA-SLNEKD--CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A L E D LD++AE LRL+ +L ITG + LL IFS FCIGK Sbjct: 421 AALHLIELDAQAPLDLLAEELRLSHQALMAITGEYTPDDLLGAIFSSFCIGK 472 >gi|225629758|ref|ZP_03787706.1| tRNA modification GTPase [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225591387|gb|EEH12479.1| tRNA modification GTPase [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 439 Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 135/316 (42%), Positives = 196/316 (62%), Gaps = 2/316 (0%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M + ETIFA+ST S +++IR+SG + KK+ PR A+L + ++ Sbjct: 1 MTNTNETIFALSTVFGKSGVAVIRISGNYALKALNHFHIKKEIKPRFATLVDLYDDSSQL 60 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D G++I FP+P SFTGED E VHG AV+ ILEEL+K+ +A PGEFS RAF N Sbjct: 61 IDNGIIIYFPAPNSFTGEDVIELQVHGSKAVIKIILEELSKV--FVMAKPGEFSLRAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GK DL + E +ADLI +ET+MQ + +++ +SGEL LY W +L I+S IEA +DF E Sbjct: 119 GKFDLTQIEGIADLIDAETKMQAKQAIKQISGELERLYSNWRQRLITIQSKIEAYIDFPE 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 + + +++ N++ L I H++ + GE +R G IVI G N GKS+LFN LA Sbjct: 179 DIWAEKSELEKINNEVQSLVQLIQEHLNDNRRGERLREGLHIVITGEPNVGKSTLFNFLA 238 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 K+D+AIV++ GTTRD+L +D+ GY + +SDTAGIRE+ D +E EGI R AD Sbjct: 239 KRDIAIVSEYAGTTRDILEAHIDIGGYPIILSDTAGIRESSDPIELEGISRAKKRSFEAD 298 Query: 301 LILLLKEINSKKEISF 316 L + L + ++++ Sbjct: 299 LRIELFPFQQRHDVNY 314 >gi|187930816|ref|YP_001901303.1| tRNA modification GTPase TrmE [Ralstonia pickettii 12J] gi|309780188|ref|ZP_07674939.1| tRNA modification GTPase TrmE [Ralstonia sp. 5_7_47FAA] gi|187727706|gb|ACD28871.1| tRNA modification GTPase TrmE [Ralstonia pickettii 12J] gi|308920891|gb|EFP66537.1| tRNA modification GTPase TrmE [Ralstonia sp. 5_7_47FAA] Length = 481 Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 153/459 (33%), Positives = 239/459 (52%), Gaps = 29/459 (6%) Query: 8 IFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLI 67 I A++T I ++R+SGP V +C + PR+A+ F DG +D+G+ + Sbjct: 26 IAAIATAPGRGGIGVVRVSGPDVRAVMHAVCGRLL-TPRQATYLPFLDADGNAIDRGIAL 84 Query: 68 VFPSPESFTGEDSAEFHVHGGIAVVNGILEEL---AKMPNLRLANPGEFSRRAFENGKID 124 FP+P S+TGED E HGG V+ +L+ + LR+A PGEF+RRAF N K+D Sbjct: 85 WFPAPHSYTGEDVLELQGHGGPVVMQLLLQRCLTAGREIGLRVAEPGEFTRRAFLNDKMD 144 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ADLI + TE R + + G S ++++ H+R +EA LDF EEE + Sbjct: 145 LAQAEAVADLIEASTEAAARSAARSLDGAFSQTVHALVERVIHLRMLVEATLDFPEEE-I 203 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + + + ++ + ++Q + G ++R G +V+ G N GKSSL NALA ++ Sbjct: 204 DFLEASDARGQLANIRTAVDGVLAQARQGALLREGLHVVLAGQPNVGKSSLLNALAGAEL 263 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIVT I GTTRD + + +EG + I DTAG+R+T+D VE+ GI+RT+ + AD++L Sbjct: 264 AIVTPIAGTTRDKVQQTIQIEGIPLNIVDTAGLRDTEDEVERIGIERTWAAIARADVVLH 323 Query: 305 L---------------KEINSKKEISFPKNIDFIFIGTKSDLYSTY------TEEYDHLI 343 L I+++ P + + + K DL E + + Sbjct: 324 LLDATDYRAKGLSPEDTAIDARIAEHVPAGVPTLRVINKIDLSGVAIPCRVDAEPPEVWL 383 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL--EMASLNEKDCG 401 S+ G G+E L + I + + + +RHL L +L ++ Sbjct: 384 SARDGLGVELLRAALLEIAGWQGGGEGLYL-ARERHLAALRTAREHLATAAEHAAQQAQS 442 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LD+ AE LRLA +L ITG + LL +IFS+FCIGK Sbjct: 443 LDLFAEELRLAQEALNSITGAFSSDDLLGVIFSRFCIGK 481 >gi|254567177|ref|XP_002490699.1| Mitochondrial protein, forms a heterodimer complex with Mto1p [Pichia pastoris GS115] gi|238030495|emb|CAY68419.1| Mitochondrial protein, forms a heterodimer complex with Mto1p [Pichia pastoris GS115] gi|328351084|emb|CCA37484.1| tRNA modification GTPase mnmE [Pichia pastoris CBS 7435] Length = 503 Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 176/485 (36%), Positives = 263/485 (54%), Gaps = 58/485 (11%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICK----KKKPFPRKASLRYFFGL-DGRIL 61 TI+A+ST SAI++IR+SGPS V + + + K+ R AS+R + G +L Sbjct: 26 TIYALSTKQGRSAIAVIRISGPSTLDVFKRLSRIDDDKRLQRHRLASVRKLYDPKSGVLL 85 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKM----PNLRLANPGEFSRRA 117 D+ L + F P S+TGED E HVHGG AVV +L + + +R A+PGEFSRR Sbjct: 86 DEALSLFFKGPNSYTGEDVLELHVHGGNAVVKCVLNAIKYLHESAAPIRYADPGEFSRRG 145 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F+NGK DL E E + D+I +ETE QR ++ + GE L+ +W ++ + + +D Sbjct: 146 FQNGKFDLTEVEGVRDMIDAETEFQRVSALTSLKGETRHLFHRWRTEIVKNVALLTTVID 205 Query: 178 FSEEEDVQNFSS--KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 F E+ D++ + V +I L+ +I +++ + K EI+ G K+ ++G NAGKSSL Sbjct: 206 FGEDHDIEEVNELFGRVAKNIDLLEAEIKNYLEKVKRSEILMKGIKLSLIGPPNAGKSSL 265 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--ETDDIVEKEGIKRTF 293 N L+ D IV+DIPGTTRD + I LD+ GY V I DTAGIR E DI+EKEGIKR Sbjct: 266 LNVLSDSDSVIVSDIPGTTRDSIDIPLDVGGYKVVIGDTAGIRSFEDADIIEKEGIKRAT 325 Query: 294 LEVENADLILL-----LKEINSK--KEISFPKNI------DFIFIGTKSDL------YST 334 + N+D+ ++ L+EINS K I K+ + + KSDL +S Sbjct: 326 TKSLNSDVAVIILPVDLREINSDLIKHIENLKSSTSSCSENILVALNKSDLLEDPNQHSQ 385 Query: 335 YTEEYDH----------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384 +++ LIS +G++ L+ L +FK + + S + S Sbjct: 386 IIKQFSEALKLPESTFCLISCANRDGIDSLMGT----LIERFKIITLTTNSDPISISQRS 441 Query: 385 QTV-------RYLEMASLNEKDCGLDIIA-ENLRLASVSLGKITG-CVDVEQLLDIIFSK 435 Q + + E S N D D++A E+LR + +GKITG V +E++L ++FS Sbjct: 442 QDILSNDVLHGFQEFRSYNGID---DVLATESLRYSVEGIGKITGEAVGIEEILGVVFSS 498 Query: 436 FCIGK 440 FCIGK Sbjct: 499 FCIGK 503 >gi|7994696|sp|O51830|MNME_BUCMP RecName: Full=tRNA modification GTPase mnmE gi|2754806|gb|AAC04235.1| ThdF [Buchnera aphidicola (Myzus persicae)] Length = 453 Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 173/462 (37%), Positives = 258/462 (55%), Gaps = 40/462 (8%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 ETI A T SA+SI+R+SG V + + P R A+ F G + +LD+G+ Sbjct: 5 ETIVAPVTSPGKSAVSILRISGSQTKIVAKKVLGSI-PKARFATYSKFLGKNSVVLDQGI 63 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + FP+P SFTGED E HG +++ +++ + + N+R+A PGEFS RAF NGKIDL Sbjct: 64 SLWFPAPFSFTGEDVLELQGHGSPLIMDLLIKRITSIENVRMAKPGEFSERAFLNGKIDL 123 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 ++AE++ DLI+SETE R S+ + G+ SS Q I + R+ IE+ +DFSEEE Sbjct: 124 IQAEAIDDLINSETESSIRASLHSLQGDFSSHIKQLISTVIEFRTNIESSIDFSEEEIDI 183 Query: 186 NFSS------KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 + S KE+ + K IS G +++ G KIVI G NAGKSSL NAL Sbjct: 184 DLKSLIYIKLKELEEKFIKTKKVISE-------GSLLKEGKKIVIAGPPNAGKSSLLNAL 236 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 + + AIVT IPGTTRD+L ++ + G ++ DTAG+R+T + +E+ GI R + ++ A Sbjct: 237 SHSNRAIVTKIPGTTRDLLYENISINGISCQLIDTAGLRDTKNEIERIGIFRAWEVIKKA 296 Query: 300 DLILLLKEINSK------------KEISFPKNIDFIFIGTKSDLYSTY--TEEYDHL--- 342 D +L + + +K + IS NI FI K+DL TE+ + L Sbjct: 297 DHVLFVIDKTTKQSEQKKICNEFIQNISV-NNIQITFILNKNDLVQDKFNTEKIESLLFI 355 Query: 343 -ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK--- 398 IS+ TG+G+++L I I N+ K+ F + +RH+ ++ + Y E +K Sbjct: 356 NISARTGQGIDKLRKHIVKIAKNENKEGVF--IARRRHINQIN--LAYNEFLMAKKKWII 411 Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++++AE+LRL + LG+ITG LL IFS FCIGK Sbjct: 412 SKNIELLAESLRLINRFLGEITGRFTSNDLLKRIFSSFCIGK 453 >gi|16081154|ref|NP_391982.1| tRNA modification GTPase TrmE [Bacillus subtilis subsp. subtilis str. 168] gi|221312085|ref|ZP_03593932.1| tRNA modification GTPase TrmE [Bacillus subtilis subsp. subtilis str. 168] gi|221316410|ref|ZP_03598215.1| tRNA modification GTPase TrmE [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221321323|ref|ZP_03602617.1| tRNA modification GTPase TrmE [Bacillus subtilis subsp. subtilis str. JH642] gi|221325606|ref|ZP_03606900.1| tRNA modification GTPase TrmE [Bacillus subtilis subsp. subtilis str. SMY] gi|135725|sp|P25811|MNME_BACSU RecName: Full=tRNA modification GTPase mnmE gi|40025|emb|CAA44403.1| unnamed protein product [Bacillus subtilis] gi|467386|dbj|BAA05232.1| thiophen and furan oxidation [Bacillus subtilis] gi|2636649|emb|CAB16139.1| tRNA modification GTPase [Bacillus subtilis subsp. subtilis str. 168] Length = 459 Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 164/461 (35%), Positives = 259/461 (56%), Gaps = 29/461 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK--KKKPFPRKASLRYFFG-----LDG 58 +TI A+ST AI+I+RLSGP Q+ + I K K K S +G Sbjct: 2 DTIAAISTPMGEGAIAIVRLSGPEAIQIADKIYKGPKGKTLSSVESHTIHYGHIVDRPSD 61 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 R++++ ++ V +P +FT ED E + HGGI VN +L+ LA RLA PGEF++RAF Sbjct: 62 RVVEEVMVSVLKAPRTFTREDVIEINCHGGIVTVNQVLQ-LALREGARLAEPGEFTKRAF 120 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG+IDL +AE++ DLI ++T+ ++M M G LS+L + ++ + +E ++D+ Sbjct: 121 LNGRIDLSQAEAVMDLIRAKTDRAMNVAMNQMEGRLSALVRRLRSEILETLAHVEVNIDY 180 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E +DV+ + + ++ +K +I + + + G+I+R G VI+G N GKSSL N+ Sbjct: 181 PEYDDVEEMTHQILVEKATAVKKEIETLLRTSEQGKILREGLSTVIIGRPNVGKSSLLNS 240 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L + AIVTDIPGTTRDV+ +++ G +++ DTAGIRET+DIVE+ G++R+ ++ Sbjct: 241 LVHEAKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDIVERIGVERSRQVLKE 300 Query: 299 ADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTY-TEEYDHL------- 342 ADLILL+ +N +E+S + +D I I K+DL TE L Sbjct: 301 ADLILLV--LNYSEELSEEDVKLFEAVEGMDVIVILNKTDLEPKIDTERVRELANGRPVV 358 Query: 343 -ISSFTGEGLEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKD 399 S EG+ +L I+S+ + + + S+ RH+ L Q R +E A S E+D Sbjct: 359 TTSLLKEEGINDLEEAIQSLFYTGAIESGDLTYVSNTRHITILQQAKRAIEDALSGIEQD 418 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+I G E L+D +FS+FC+GK Sbjct: 419 VPIDMVQIDLTRCWELLGEIIGDSVHESLIDQLFSQFCLGK 459 >gi|254490328|ref|ZP_05103517.1| tRNA modification GTPase TrmE [Methylophaga thiooxidans DMS010] gi|224464461|gb|EEF80721.1| tRNA modification GTPase TrmE [Methylophaga thiooxydans DMS010] Length = 419 Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 165/420 (39%), Positives = 233/420 (55%), Gaps = 32/420 (7%) Query: 43 PFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKM 102 P PR A +F D I+D G+ + FP P SFTGED E HG V++ + + ++ Sbjct: 10 PKPRYAQFCHFREADDTIIDSGIALYFPGPASFTGEDVVELQGHGSPLVMDRLCQRAIEL 69 Query: 103 PNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWI 162 R+A PGEFS RAF N K+DL +AE++ADLI S TE R +M + G+ S+ ++ Sbjct: 70 -GARMARPGEFSERAFLNNKMDLAQAEAVADLIESSTEQAARSAMRSLQGDFSNRINAFL 128 Query: 163 DKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNG 219 ++LTH+R ++EA +DF++EE + + +V L D+L + I+ QG+L +R G Sbjct: 129 EELTHLRMYVEASIDFADEE-IDFLAEAQVDKQLQDLLTTLDGIAGSARQGRL---LREG 184 Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 +V+ G NAGKSSL N LA D AIVTD+ GTTRDVL + L+G ++ISDTAG+ E Sbjct: 185 ISVVLAGQPNAGKSSLHNQLAGHDAAIVTDVAGTTRDVLREQIHLDGLPLRISDTAGLHE 244 Query: 280 -TDDIVEKEGIKRTFLEVENADLILL-------LKEINSKKEISFPKNIDFIFIGTKSDL 331 T DIVE EGI+RT E+ AD ILL + ++K P + I K D Sbjct: 245 ATSDIVELEGIRRTQNELAQADHILLIIDDSLGMTPQDNKILNDMPADKPLTVIRNKIDR 304 Query: 332 YSTYTEEYDH------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ 385 E +S+ TGEG+E L + + ++ I + +RHL LS+ Sbjct: 305 SGHQIGETVEAGRQTIFLSAKTGEGMELLRQHLFEAVGYHPEEEGVFI-ARRRHLDALSR 363 Query: 386 TVRYLEMASLNEKDC--GL---DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +A + DC GL +++AE LR A +LG+ITG E LLD IFS FCIGK Sbjct: 364 A----RLAISHGYDCLAGLGAGELLAEELRQAQNALGEITGTFTTEDLLDHIFSSFCIGK 419 >gi|311070643|ref|YP_003975566.1| tRNA modification GTPase TrmE [Bacillus atrophaeus 1942] gi|310871160|gb|ADP34635.1| tRNA modification GTPase TrmE [Bacillus atrophaeus 1942] Length = 459 Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 163/462 (35%), Positives = 264/462 (57%), Gaps = 31/462 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK--KKKPFPRKASLRYFFG--LD---G 58 +TI A+ST AI+I+RLSGP Q+ + + K K K S +G +D Sbjct: 2 DTIAAISTPMGEGAIAIVRLSGPEAIQIADRMYKGPKGKTISSAESHTIHYGHIVDRSTQ 61 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 R++++ ++ V +P +FT ED E + HGGI VN +L+ LA RLA PGEF++RAF Sbjct: 62 RVVEEVMVSVLRAPRTFTREDVIEINCHGGIVTVNQVLQ-LALREGARLAEPGEFTKRAF 120 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG+IDL +AE++ DLI ++T+ ++M M G LS+L + ++L + +E ++D+ Sbjct: 121 LNGRIDLSQAEAVMDLIRAKTDRAMNVAMNQMEGRLSALVRRLRNELLETLAHVEVNIDY 180 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E +DV+ + + ++ +K +I + ++ + G+I+R G VI+G N GKSSL N+ Sbjct: 181 PEYDDVEEMTHQLLIEKASSVKKEIDALLTTSEQGKILREGLSTVIIGRPNVGKSSLLNS 240 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L + AIVTDIPGTTRDV+ +++ G +++ DTAGIRET+DIVEK G++R+ ++ Sbjct: 241 LVHETKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDIVEKIGVERSRQVLKE 300 Query: 299 ADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTYTEEYDHLISS----- 345 ADLILL+ +N +E+S K +D I I K+DL + +++ Sbjct: 301 ADLILLV--LNYSEELSEEDVKLFEAVKGMDVIVILNKTDLEPKIDADRVKELANGRPVV 358 Query: 346 ----FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN--EK 398 EG+ +L I+S+ + + + S+ RH+ L + R +E A LN E+ Sbjct: 359 TTSLLKEEGITDLEEAIQSLFFTGTIESGDLTYVSNTRHISILHEAKRAIEDA-LNGIEQ 417 Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D +D++ +L LG+I G E L+D +FS+FC+GK Sbjct: 418 DVPIDMVQIDLTRCWELLGEIIGDAVHESLIDQLFSQFCLGK 459 >gi|312081419|ref|XP_003143020.1| hypothetical protein LOAG_07439 [Loa loa] gi|307761818|gb|EFO21052.1| hypothetical protein LOAG_07439 [Loa loa] Length = 451 Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 170/457 (37%), Positives = 262/457 (57%), Gaps = 44/457 (9%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRK---ASLRYFFGLDGRILDK 63 TIFAVS+GALP+AIS+IR+SG + E + +KK PR+ A++R DG ++D+ Sbjct: 16 TIFAVSSGALPAAISVIRVSGKESRRCLEQLTGRKKILPRQLFYANIRR----DGELIDR 71 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 G+ + P P++ TGED AEF+VHG AVV+ +L+ L + N++LA GEF++RAF NGK+ Sbjct: 72 GMAVFLPGPKTSTGEDVAEFYVHGSRAVVDCLLQALGQFDNVQLARAGEFTKRAFFNGKM 131 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 L E +SLA L++++T+ QRRL++ +++L + +L +R+ +EA +DF +D Sbjct: 132 TLQEVQSLAYLLAAQTQRQRRLAL-----RMNTLGKK---QLIEVRASVEASIDFG--DD 181 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 V F +++ I + +++S+ Q G +I G +IVILG +N GKSSLFN +A +D Sbjct: 182 VW-FQWEDIRVVISLMISELSNIQEQMHRGMLINEGLRIVILGQTNVGKSSLFNRMANRD 240 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET-DDIVEKEGIKRTFLEVENADLI 302 +AIV+DI GTTRD L + L V I DTAGIRE D +E EGI+RT AD+ Sbjct: 241 MAIVSDIGGTTRDSLEATIQLSSIPVTIVDTAGIREILLDSLEAEGIRRTLRRAAEADIA 300 Query: 303 LLL----------KEINSKKEISFPKNIDFIFIG-TKSDLYSTYTE---EYDHL-ISSFT 347 +++ ++ S K +F+ K D+ + + + IS + Sbjct: 301 IVVIDSSMCKDFETDVRSVLSWCHLKKETPVFVALNKCDICNVPNNIVLPWPAVNISCIS 360 Query: 348 GEGLEELINKIKSILSNKFKKLPFS----IPSHKRHLYHLSQTVRYLEMASLNEKDCGLD 403 GEG+ L+ I +S + P S + S + H L +T+ L A L D Sbjct: 361 GEGISSLLEIICEHIS---ELCPVSDDSTLVSSQAHRLLLKETILVLRKA-LEVNDVA-- 414 Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++AE LR S + +++G + EQ+LD IFS FCIGK Sbjct: 415 VVAELLRDVSDYISEMSGTIVNEQILDQIFSSFCIGK 451 >gi|88798543|ref|ZP_01114127.1| tRNA modification GTPase [Reinekea sp. MED297] gi|88778643|gb|EAR09834.1| tRNA modification GTPase [Reinekea sp. MED297] Length = 455 Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 163/464 (35%), Positives = 249/464 (53%), Gaps = 33/464 (7%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFF-GLDGR 59 M +TI A++T + I+R+SG + V E I KK+ P PR A F+ G Sbjct: 1 MIASNDTITAIATPPGRGGVGIVRVSGKAATAVAEKILKKR-PEPRYAHYGPFYHPTQGD 59 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 ++D+G+ + FP P SFTGED E HGG ++ +LE + + RLA PGEFS RAF Sbjct: 60 VIDEGIALFFPGPNSFTGEDVLELQGHGGPVILELLLEAVCSL-GCRLARPGEFSERAFL 118 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 N KIDL +AE++ADLI + + R ++ + G+ S+ Q +++L +R ++EA +DF Sbjct: 119 NDKIDLTQAEAIADLIDASSREAARSAVRSLQGDFSNAVHQLVEQLIQLRIYVEAAIDFP 178 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 EEE + S +V D+ + + ++ + G ++R+G +VI G NAGKSSL NAL Sbjct: 179 EEE-IDFLSDGKVETDLRQVMSQLADVQATANQGSLMRDGMTVVIAGRPNAGKSSLLNAL 237 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 + ++ AIVTDI GTTRDVL + ++G + I DTAG+R+ D VE+ G++R + E+E A Sbjct: 238 SGQERAIVTDIAGTTRDVLKEHIHIDGMPLHIIDTAGLRDAPDAVERIGVERAWAEIETA 297 Query: 300 DLILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTYTEEYDHL------ 342 D ILL+ + + P+ I K D T E L Sbjct: 298 DRILLMVDATDTDAVDPETIWPDFMHRLPERAQLTVIRNKID----QTGEAAGLNMDSAV 353 Query: 343 ----ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLN 396 +S+ G+ L + +K ++ + I + KRHL L + L+ +A L Sbjct: 354 PVIRLSAQNRAGVNHLRDHLKQLMGFEGNHESGFI-ARKRHLDALLRAAEALDNGLAQLL 412 Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G +++AE+LR+A +L +ITG + LL IFS FCIGK Sbjct: 413 GPAAG-ELLAEDLRVAQNALNEITGEFSPDDLLGRIFSSFCIGK 455 >gi|94676628|ref|YP_588606.1| tRNA modification GTPase TrmE [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|166200469|sp|Q1LTV8|MNME_BAUCH RecName: Full=tRNA modification GTPase mnmE gi|94219778|gb|ABF13937.1| tRNA modification GTPase TrmE [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 457 Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 176/468 (37%), Positives = 255/468 (54%), Gaps = 39/468 (8%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 MN +TI A +T I I+R+SG +V + + K P RKA F+ +G I Sbjct: 1 MNLTFDTIAAQATPNGRGGIGIVRVSGTLTTRVAKELLGKV-PIQRKAEYLTFYHQNGNI 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +DKG+ + FP P SFTGED E H HGG V++ +L+ + +P +R+A PGEFS RAF N Sbjct: 60 IDKGIALFFPGPNSFTGEDILELHGHGGPVVLDLLLQRIITLPGVRIARPGEFSERAFLN 119 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 KIDL +AE++ADLI + + R ++ + G S+ ++KLT +R IEA ++F E Sbjct: 120 EKIDLAQAEAIADLIDANSAQAARAAISSLQGVFSTTINDLVEKLTSLRVDIEAKINFPE 179 Query: 181 EEDVQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 E + K++ L+ + N I + QG I+R G KIVI G N GKSS+ N Sbjct: 180 ENETNVSIDKKIIANLDQAILSINKIRTAAYQGC---ILREGIKIVITGKPNVGKSSIIN 236 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RETDDIVEKEGIKRTFLEV 296 ALA +VAIVT+I GTTRD+L + L+G V I DTAG+ + + VEK GI+R + E+ Sbjct: 237 ALAGHEVAIVTNIAGTTRDILREYIYLDGIPVSIIDTAGLCNVSHNEVEKIGIQRAWNEI 296 Query: 297 ENADLILLLKEINSKKE-----------ISFPKNIDFIFIGTKSDLYS-----TYTEEYD 340 + AD ILL+ + ++ K +FP I K+D+ T Y Sbjct: 297 KQADHILLVVDSSTTKLSEQDKLCNTLIANFPYKTPVTIIRNKADITGEKIGETLNNNYS 356 Query: 341 HL-ISSFTGEGLEELINKIKSILSNKFKKLPFSIP----SHKRHLYHLSQTVRYLEMASL 395 + IS+ + G+E L+ + I+S LP S + +RHL L T YL Sbjct: 357 VITISALSSLGIEILLKYLTKIIS-----LPSSTEGVFLARRRHLEALEITANYL--LQC 409 Query: 396 NEK---DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 EK L++IAE+L+LA +L +ITG +LL IFS+FC+GK Sbjct: 410 KEKISFPTMLELIAEDLQLAHNALSQITGKFSSHELLKKIFSRFCLGK 457 >gi|42520794|ref|NP_966709.1| tRNA modification GTPase TrmE [Wolbachia endosymbiont of Drosophila melanogaster] gi|99034610|ref|ZP_01314568.1| hypothetical protein Wendoof_01000618 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] gi|81831244|sp|Q73GH3|MNME_WOLPM RecName: Full=tRNA modification GTPase mnmE gi|42410534|gb|AAS14643.1| tRNA modification GTPase TrmE [Wolbachia endosymbiont of Drosophila melanogaster] Length = 508 Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 135/316 (42%), Positives = 196/316 (62%), Gaps = 2/316 (0%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M + ETIFA+ST S +++IR+SG + KK+ PR A+L + ++ Sbjct: 1 MTNTNETIFALSTVFGKSGVAVIRISGNYALKALNHFHIKKEIKPRFATLVDLYDDSSQL 60 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D G++I FP+P SFTGED E VHG AV+ ILEEL+K+ +A PGEFS RAF N Sbjct: 61 IDNGIIIYFPAPNSFTGEDVIELQVHGSKAVIKIILEELSKV--FVMAKPGEFSLRAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GK DL + E +ADLI +ET+MQ + +++ +SGEL LY W +L I+S IEA +DF E Sbjct: 119 GKFDLTQIEGIADLIDAETKMQAKQAIKQISGELERLYSNWRQRLITIQSKIEAYIDFPE 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 + + +++ N++ L I H++ + GE +R G IVI G N GKS+LFN LA Sbjct: 179 DIWAEKSELEKINNEVQSLVQLIQEHLNDNRRGERLREGLHIVITGEPNVGKSTLFNFLA 238 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 K+D+AIV++ GTTRD+L +D+ GY + +SDTAGIRE+ D +E EGI R AD Sbjct: 239 KRDIAIVSEYAGTTRDILEAHIDIGGYPIILSDTAGIRESSDPIELEGISRAKKRSFEAD 298 Query: 301 LILLLKEINSKKEISF 316 L + L + ++++ Sbjct: 299 LRIELFPFEQRHDVNY 314 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/94 (34%), Positives = 57/94 (60%), Gaps = 8/94 (8%) Query: 350 GLEELINKIKSILSNKF---KKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIA 406 G +LI+ IK KF + P + + +RH H+ + + +L+ ++ D +++I+ Sbjct: 420 GTNKLISLIKEKAEEKFGHDRDTP--VITRQRHRNHMKKALEHLQRFNI---DNPIELIS 474 Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E+LRLA+ LG + G +DVE++L +FS FC+GK Sbjct: 475 EDLRLAAFELGAVIGIIDVEEILSSVFSNFCVGK 508 >gi|307103609|gb|EFN51868.1| hypothetical protein CHLNCDRAFT_8246 [Chlorella variabilis] Length = 469 Score = 244 bits (622), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 152/482 (31%), Positives = 261/482 (54%), Gaps = 61/482 (12%) Query: 7 TIFAVSTGALPSAISIIRLSGPSC-FQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 TI+A+S+ A+++IR+SGP+ + + + + P RKA+L +G +LD+GL Sbjct: 1 TIYALSSAPGRGALAVIRISGPASDMALKHLMMRDELPPARKATLTSLTAPNGELLDRGL 60 Query: 66 LIVFPSPESFTG-EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 ++ F +P SFTG ED AE H+HG AVV+ + + L ++ LR A GEF+RRAF+ GK+D Sbjct: 61 VLRFQAPLSFTGGEDCAELHLHGSPAVVHAVQDALREL-RLRPAEAGEFARRAFDAGKLD 119 Query: 125 LLEA-------------------ESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKL 165 L +A E LADL++++TE QRR ++ + L+ + L Sbjct: 120 LTQARAQPHHAHLHAHHSAWLDVEGLADLLAADTESQRRQALLHSTAHLTVAF-----PL 174 Query: 166 THIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVIL 225 + + +EA +DF E+E + + VL + L+ + H++ GE++R G +I I+ Sbjct: 175 PSVAARLEAVIDFGEDEGIAEDVAAGVLPLVCDLRQQLEGHLASAASGELVRTGVRIAIV 234 Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVE 285 G NAGKSSL N LA ++ AIV+ PGTTRDV+ + L+L G V + D+AG+R+TD +E Sbjct: 235 GPPNAGKSSLLNLLAGQEAAIVSPAPGTTRDVVQVQLELGGVKVILIDSAGLRQTDCPIE 294 Query: 286 KEGIKRTFLEVENADLILLLKE---------INSKKEIS-----FPKNIDFIFIGTKSDL 331 EG++R A ++L L + ++S+ +++ P I +++ K+DL Sbjct: 295 AEGVRRAVAAAHQAHIVLHLADATSGAAADGVDSRGQLADVALPLPAQIVQLWVMNKADL 354 Query: 332 Y--------STYTEEYDHLISSFTGEGLEELINKIKS-----ILSNKFKKLPFSIPSHKR 378 +T L+S +G+G+++L+ ++ + S + ++ + R Sbjct: 355 VPGCHEAAGATVPPAPHLLVSCKSGQGIDQLLALLQQHVRALVASGGDGGMAGALVTRAR 414 Query: 379 HLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCI 438 H +V + +L L++ E +R A+ +LG++TG +D +LD +F +FCI Sbjct: 415 HKR---TSVPPDILVALQH----LEVQCEEVRAAARALGRVTGAIDTAMVLDSLFCEFCI 467 Query: 439 GK 440 GK Sbjct: 468 GK 469 >gi|254000528|ref|YP_003052591.1| tRNA modification GTPase TrmE [Methylovorus sp. SIP3-4] gi|253987207|gb|ACT52064.1| tRNA modification GTPase TrmE [Methylovorus sp. SIP3-4] Length = 446 Score = 244 bits (622), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 162/449 (36%), Positives = 250/449 (55%), Gaps = 21/449 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A++T I ++R+SGP+ Q+ + P PR A+ F DG+++D G+ Sbjct: 5 DTIAAIATAPGSGGIGVVRISGPASAQIAAAVLGHCPP-PRHAAYLPFKEADGQLIDSGI 63 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 I + P S+TGED E HGG A++ +L ++ R A PGEF+RRAF N K+DL Sbjct: 64 AIFYAGPHSYTGEDVLELQAHGGPALMQLLLLRCLQL-GARQAEPGEFTRRAFLNDKLDL 122 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++AD+I++ T R ++ +SGE S ++ L ++R ++EA LDF EE D+ Sbjct: 123 AQAEAVADVINAATAEAARSAVRSLSGEFSRYIQDLLESLINLRMYVEACLDFPEE-DID 181 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S V + + + + + G ++R G ++V++G N GKSSL N LA ++VA Sbjct: 182 FISQGRVAEKLQNIADALELVFKGARQGNLLREGIQVVLVGQPNVGKSSLMNQLAGEEVA 241 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVT I GTTRD + + +EG + + DTAG+RET+D VEK+GI RT+ +ENA+ LLL Sbjct: 242 IVTPIAGTTRDTIKNVVQIEGVPLHLIDTAGLRETEDEVEKQGIARTWRALENANAALLL 301 Query: 306 KE-----INSKKEI--SFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFTGEGLE 352 + ++K I P N+ I++ K DL+S + +H IS+ G GL+ Sbjct: 302 VDAAHGITETEKSILERLPANLPKIWVHNKIDLHSEQPRQREHEGELHLYISAKLGLGLD 361 Query: 353 ELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411 L + I ++ SI + RHL L +L+ A++ + +++AE LRL Sbjct: 362 ALKAHLLKIAG--WQPAGESIFMARTRHLQALQMVQGHLQNAAVYLEQP--ELLAEELRL 417 Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A L ITG + LL IFS+FCIGK Sbjct: 418 AQHVLSSITGEFTPDDLLGEIFSRFCIGK 446 >gi|241665032|ref|YP_002983392.1| tRNA modification GTPase TrmE [Ralstonia pickettii 12D] gi|240867059|gb|ACS64720.1| tRNA modification GTPase TrmE [Ralstonia pickettii 12D] Length = 481 Score = 244 bits (622), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 152/459 (33%), Positives = 240/459 (52%), Gaps = 29/459 (6%) Query: 8 IFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLI 67 I A++T I ++R+SGP V + +C + PR+A+ F +G +D+G+ + Sbjct: 26 IAAIATAPGRGGIGVVRVSGPDVRAVMQAVCGRVL-TPRQATYLPFLDAEGNAIDRGIAL 84 Query: 68 VFPSPESFTGEDSAEFHVHGGIAVVNGILEEL---AKMPNLRLANPGEFSRRAFENGKID 124 FP+P S+TGED E HGG V+ +L+ + LR+A PGEF+RRAF N K+D Sbjct: 85 WFPAPHSYTGEDVLELQGHGGPVVMQLLLQRCLTAGREIGLRVAEPGEFTRRAFLNDKMD 144 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ADLI + TE R + + G S ++++ H+R +EA LDF EEE + Sbjct: 145 LAQAEAVADLIEASTEAAARSAARSLEGAFSQAVHALVERVIHLRMLVEATLDFPEEE-I 203 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + + + ++ + ++Q + G ++R G +V+ G N GKSSL NALA ++ Sbjct: 204 DFLEASDARGQLAGIRTAVDGVLAQARQGALLREGLHVVLAGQPNVGKSSLLNALAGAEL 263 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIVT I GTTRD + + +EG + I DTAG+R+T+D VE+ GI+RT+ + AD++L Sbjct: 264 AIVTPIAGTTRDKVQQTIQIEGIPLNIVDTAGLRDTEDEVERIGIERTWAAIARADVVLH 323 Query: 305 L---------------KEINSKKEISFPKNIDFIFIGTKSDLYSTY------TEEYDHLI 343 L I+++ P + + + K DL E + + Sbjct: 324 LLDATDYRAKGLSPEDTAIDARIAEHVPAGVPTLRVINKIDLSGVAIPGRVDAEPPEVWL 383 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL--EMASLNEKDCG 401 S+ G G+E L + I + + + +RHL L +L ++ Sbjct: 384 SARDGLGVELLRAALLEIAGWQGGGEGLYL-ARERHLAALRTAREHLATAAEHAAQQAQS 442 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LD+ AE LRLA +L ITG + LL +IFS+FCIGK Sbjct: 443 LDLFAEELRLAQEALNSITGAFSSDDLLGVIFSRFCIGK 481 >gi|90194080|gb|ABD92601.1| ThdF [Lonepinella koalarum] Length = 436 Score = 244 bits (622), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 155/436 (35%), Positives = 248/436 (56%), Gaps = 27/436 (6%) Query: 19 AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGE 78 + I+R+SGP +V + + K PR A+ F +D +LD+G+ + F SP SFTGE Sbjct: 7 GVGILRVSGPLAMEVAQAVVGKALK-PRFANYLPFKNVDDTVLDQGIALFFKSPHSFTGE 65 Query: 79 DSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSE 138 D E HGG V++ +L+ + ++ +RLA PGEFS +AF NGK+DL +AE++ADLI + Sbjct: 66 DVLELQGHGGQMVLDLLLKRILQVQGVRLARPGEFSEQAFLNGKLDLAQAEAIADLIDAT 125 Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED--VQNFSSKEVLNDI 196 +E R +++ + GE S+ Q +D + ++R+++EA +DF +EE + + + LN+I Sbjct: 126 SEQAARSALKSLQGEFSNKVNQLVDNVIYLRTYVEAAIDFPDEEIDFLADGKIENKLNEI 185 Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 + + + + QG I+R G K+VI G NAGKSSL NALA +D AIVT+I GTTRD Sbjct: 186 IVQLDKVRAEAKQGS---ILREGMKVVIAGRPNAGKSSLLNALAGRDAAIVTNIAGTTRD 242 Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN------- 309 VL + ++G + I DTAG+R+ D VE+ GI R + E+E AD +LL+ + Sbjct: 243 VLREHIHIDGMPLHIIDTAGLRDATDEVERIGINRAWHEIEQADRVLLMLDSTDADSADL 302 Query: 310 SKKEISF----PKNIDFIFIGTKSDLYSTYT---EEYDHL---ISSFTGEGLEELINKIK 359 +K + F P+++ I K+DL T EE ++ +S+ T +G++ L +K Sbjct: 303 NKVRLEFLQKLPESLPVTIIRNKTDLSGENTGLSEENGYITIRLSAQTQQGVDLLREHLK 362 Query: 360 SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLASVSLG 417 + + + +RHL L + +L++ L + G +++AE LRL L Sbjct: 363 QTMGYQ-TTTEGGFLARRRHLEALEKAAEHLQLGHIQLTQFHAG-ELLAEELRLVQTYLS 420 Query: 418 KITGCVDVEQLLDIIF 433 +ITG + LL IF Sbjct: 421 EITGKFTSDDLLGNIF 436 >gi|332029663|gb|EGI69552.1| tRNA modification GTPase GTPBP3, mitochondrial [Acromyrmex echinatior] Length = 473 Score = 244 bits (622), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 155/413 (37%), Positives = 225/413 (54%), Gaps = 41/413 (9%) Query: 45 PRKASLRYFFGLDGR-ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP 103 PR+A L+ + R ++D GL + FP P SFTGEDS EFHVHGG A++ +++ L+++ Sbjct: 9 PRRAFLQKIRDPETREVIDNGLCLWFPGPHSFTGEDSVEFHVHGGSAILTKLMQALSRL- 67 Query: 104 NLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWID 163 + A PGEF+RRAF N K+DL E E LADLI +ETE QR+ ++ + G L LY W Sbjct: 68 QVHPALPGEFTRRAFYNNKLDLTEVEGLADLIEAETECQRKQALLQVDGILRKLYNSWRK 127 Query: 164 KLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIV 223 L+ + IEA +DF EE++++N + + + L ++ H++ G+ GEI+RNG + V Sbjct: 128 VLSESVASIEAYIDFGEEDNIENDVIQNAHHALRQLMRELEEHLADGRRGEILRNGVRTV 187 Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDD 282 I+G N GKSSL N L +++ AIVT I GTTRDV+ + ++ GY V I+DTAGI E D Sbjct: 188 IIGEPNVGKSSLLNHLVQRNAAIVTPIAGTTRDVIELTANISGYPVLIADTAGITEDIGD 247 Query: 283 IVEKEGIKRTFLEVENADLILL---------------------LKEINSKKEISFPKNID 321 IVE EGI+R ENAD +++ L + ++ ++ Sbjct: 248 IVEAEGIRRARSHAENADFVVVMIDALKCATSGLTYKDYVREYLSSLGIQELLAKIGRER 307 Query: 322 FIFIGTKSDLYSTYTEEYDH-------LISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374 FI I K DL EE H L+S T +G ++L+ + SN P Sbjct: 308 FIVIANKKDLLK--EEEKRHLDNAEAVLVSCRTEDGFQDLLRSLTDHFSNICGDPSAECP 365 Query: 375 --SHKRHLYHLSQTVR----YLEMASLNEKDCGLDIIAENLRLASVSLGKITG 421 S RH HL + +R Y E + + D + I AE + A LG+ITG Sbjct: 366 TISQARHRNHLDRCLRHLQKYFEFCANEQHD--MAIAAEEIHKAMRELGRITG 416 >gi|311086919|gb|ADP66999.1| tRNA modification GTPase TrmE [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 453 Score = 244 bits (622), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 174/461 (37%), Positives = 252/461 (54%), Gaps = 38/461 (8%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK--KKKPFPRKASLRYFFGLDGRILDK 63 ETI A T SA+ I+R+SG FQ K K P R A+ F + ILDK Sbjct: 5 ETIVAQVTCPGKSAVGILRISG---FQTKIVAIKILGKIPLARFATYSNFLDENNEILDK 61 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 G+ + FP+P S TGED E HG +++ ++ + + N+R+A PGEFS RAF NGK+ Sbjct: 62 GISLWFPAPHSLTGEDVLELQGHGSPLIMDLLIRRILSINNIRMAKPGEFSERAFLNGKM 121 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE- 182 DL++AES+ DLI+SETE+ R S+ + G+ S + ++ + R IE+++DFSEEE Sbjct: 122 DLIQAESIDDLINSETELSARASLNSLQGKFSFFIKELMNLIIEFRINIESNIDFSEEEI 181 Query: 183 -----DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 D+ N S+E+ + L LK + G ++R G KIVI G N+GKSSL N Sbjct: 182 NINMQDIINIKSRELHDKFLKLKATVLK-------GSLLREGKKIVIAGLPNSGKSSLLN 234 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 L+ D AIVTDIPGTTRD+L D+ + G ++ DTAG+R+TDD VE+ GI R + + Sbjct: 235 ILSYSDRAIVTDIPGTTRDLLYEDISINGVRCELIDTAGLRDTDDKVERIGIMRAWEMIR 294 Query: 298 NADLILLL--KEINSKKEIS----FPKNI-----DFIFIGTKSDLYSTY--TEEYDHL-- 342 +D +L + K ++ K+ F KNI F+ K+DL +E D Sbjct: 295 KSDHVLFVIDKTLSKSKQKKICDDFMKNILNNKTQVTFVLNKNDLIKDEFGIKEIDGTAF 354 Query: 343 --ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV-RYLEMASLNEKD 399 IS+ TGEG+ L I I N + F + +RH+ L +L + + Sbjct: 355 ISISARTGEGVNILREHIIKIEKNINNESVF--IARRRHIKQLDLAYDEFLTAENTWRES 412 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++++AE+L + S LG+I G E LL+ IFS FCIGK Sbjct: 413 ENIELLAESLSIISKFLGEIIGQCTSEDLLNHIFSSFCIGK 453 >gi|88608741|ref|YP_506593.1| tRNA modification GTPase TrmE [Neorickettsia sennetsu str. Miyayama] gi|123763699|sp|Q2GD53|MNME_NEOSM RecName: Full=tRNA modification GTPase mnmE gi|88600910|gb|ABD46378.1| tRNA modification GTPase TrmE [Neorickettsia sennetsu str. Miyayama] Length = 550 Score = 244 bits (622), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 132/304 (43%), Positives = 196/304 (64%), Gaps = 5/304 (1%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFI-CKKKKPFPRKASLRYFFGLDGRILDKGL 65 TI+A+ST S +++ R+SGP + E + K+P PR F + ++D+ L Sbjct: 3 TIYALSTVFGKSGVAVFRISGPDALRALELLGLDIKQPRPRFVYFARLFD-EQLLIDEVL 61 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 ++ F SP SFTGED E H HG IAV+ I E+L+ + + A PGEF+RRA N ++DL Sbjct: 62 VVYFASPASFTGEDVVELHSHGSIAVLRYISEKLSTL--FKPAEPGEFTRRAVLNNRMDL 119 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE + D+I+SET+ Q + + +SG+L+ Y DK+ + S++EA +DF +EE + Sbjct: 120 TKAEGIIDIINSETQEQLKQASRHLSGKLAEEYNSLRDKIIKVLSYLEAYIDFPDEE-IP 178 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 E+ I+ ++ DIS +++ GK+GE IR G+ +VI+G N GKS+LFN LAK+D+A Sbjct: 179 ETVLAEIQQSIVAIQCDISRYLADGKVGEKIREGFSVVIVGKPNVGKSTLFNYLAKRDLA 238 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTDIPGTTRD+L + LD GY V +SDTAGI+ET D +EK GI R + AD+I+ L Sbjct: 239 IVTDIPGTTRDILEVRLDCHGYPVILSDTAGIQETCDAIEKMGITRALKKATEADVIVFL 298 Query: 306 KEIN 309 ++I Sbjct: 299 RDIT 302 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 65/125 (52%), Gaps = 9/125 (7%) Query: 320 IDFIFIGTKSDLYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375 I + + TK D+ T + IS + GEG++ L++KI I+S+ + I + Sbjct: 431 IPVVKVVTKGDIAPTQLSFWQDKGYICISVYKGEGMQLLLDKIFDIISSS--NIEAHIIT 488 Query: 376 HKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSK 435 RH L + +L + D +++ AE ++LA+ + +TG + ++ +LD IFS Sbjct: 489 RARHRLALENALEHLRRFN---TDLPIELAAEEIKLAANHIASVTGEIKLDDVLDEIFSS 545 Query: 436 FCIGK 440 FCIGK Sbjct: 546 FCIGK 550 >gi|289826410|ref|ZP_06545522.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 426 Score = 244 bits (622), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 143/408 (35%), Positives = 229/408 (56%), Gaps = 21/408 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+H +TI A +T + I+R+SG V + + K P PR A F +DG Sbjct: 1 MSH-NDTIVAQATPPGRGGVGILRISGLKARDVAQEVLGKL-PKPRYADYLPFKDVDGSA 58 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG +++ +L+ + +P +R+A PGEFS RAF N Sbjct: 59 LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + +E R ++ + G S+ ++ LTH+R ++EA +DF + Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + S ++ + + D+ + ++ + G ++R G K+VI G NAGKSSL NALA Sbjct: 179 EE-IDFLSDGKIEAQLNGVIADLDAVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + ++G + I DTAG+R+ +D VE+ GI+R + E+E AD Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDANDEVERIGIERAWQEIEQAD 297 Query: 301 LILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTY---TEEYDH---LI 343 +L + + + + PKN+ + K+D+ +E H + Sbjct: 298 RVLFMVDGTTTDAVDPADIWPDFIARLPKNLPITVVRNKADITGETLGISEVNGHSLVRL 357 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391 S+ TGEG++ L N +K + + + +RHL L++ +LE Sbjct: 358 SARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALAEAANHLE 404 >gi|72383392|ref|YP_292747.1| tRNA modification GTPase TrmE [Prochlorococcus marinus str. NATL2A] gi|123620473|sp|Q46HI4|MNME_PROMT RecName: Full=tRNA modification GTPase mnmE gi|72003242|gb|AAZ59044.1| tRNA modification GTPase trmE [Prochlorococcus marinus str. NATL2A] Length = 464 Score = 243 bits (621), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 168/462 (36%), Positives = 258/462 (55%), Gaps = 31/462 (6%) Query: 5 KETIFAVSTGALPS--AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----D 57 ++TI A++T P +I+ IR+SG S + + I ++ + +G Sbjct: 8 EDTIAAIATAVSPGQGSIAAIRISGSSAIETSKNIVDVPG-IQDWSTHKVLYGHVTEENR 66 Query: 58 GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 + +D+ L++V P SFTGED E H HGGI V ILE + P++R A PGEFS+RA Sbjct: 67 KKYIDEVLILVMKGPRSFTGEDVVEIHCHGGIIPVQKILERILAFPSVRRAEPGEFSQRA 126 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 NG++ L +AES+++L+S+ + L++ G+ G + + +L + IEA +D Sbjct: 127 VLNGRLSLTQAESISELVSARSRKAAELAINGIEGNIQTTIQSIRKRLIEQLTEIEARID 186 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 F EED+ K V N+I+ +K D++ I K G +R+G K+ + G N GKSSL N Sbjct: 187 F--EEDLPLLDEKHVKNEIVAIKKDLNELIDNAKRGSWVRSGLKVALTGKPNVGKSSLMN 244 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 L+K++ AIVTD+PGTTRD+L ++ LEG V DTAG+R+T DI+EK GI RT + Sbjct: 245 RLSKQEKAIVTDLPGTTRDILESEIILEGIPVTFIDTAGLRDTKDIIEKIGISRTKKTLI 304 Query: 298 NADLILLLKE-----INSKKEI--SFPKNIDFIFIGTKSDLYSTYT----------EEYD 340 +ADLI+L+ + N + I P NI + +G KSDL + + +E Sbjct: 305 HADLIILIFDYSSGWTNEDESILKQLPINIPLLIVGNKSDLTNDQSFEKVPKYILKKENL 364 Query: 341 HLISSFTGEGLEELINK-IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE-MASLNEK 398 +IS+ TG G ++LIN +K S++ L ++ ++R L T++ LE + + ++ Sbjct: 365 VIISAKTGNGEDDLINYLLKKCGSSQTHGLDIAL--NERQLDLAKSTMKSLENINKVFDE 422 Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D +LR A LG++TG E LLD IFSKFCIGK Sbjct: 423 KLPWDFWTIDLRQAINYLGELTGEDLTESLLDNIFSKFCIGK 464 >gi|254360929|ref|ZP_04977075.1| possible tRNA modification GTP-binding protein TrmE [Mannheimia haemolytica PHL213] gi|261493844|ref|ZP_05990356.1| putative tRNA modification GTP-binding protein TrmE [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261495110|ref|ZP_05991574.1| putative tRNA modification GTP-binding protein TrmE [Mannheimia haemolytica serotype A2 str. OVINE] gi|153092408|gb|EDN73471.1| possible tRNA modification GTP-binding protein TrmE [Mannheimia haemolytica PHL213] gi|261309180|gb|EEY10419.1| putative tRNA modification GTP-binding protein TrmE [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310446|gb|EEY11637.1| putative tRNA modification GTP-binding protein TrmE [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 452 Score = 243 bits (621), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 156/457 (34%), Positives = 251/457 (54%), Gaps = 27/457 (5%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64 K+TI A +T + I+R+SGP V + + K P PR A+ F DG +LD+G Sbjct: 2 KDTIVAQATPIGRGGVGILRVSGPLAETVAQAVLGKTLP-PRIANYLPFKDEDGTVLDQG 60 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 + + F +P SFTGED E HGG +++ +L+ + ++ LR+A GEFS +AF N K+D Sbjct: 61 IALFFKAPNSFTGEDVLELQGHGGQVILDLLLKRILQVKGLRIARAGEFSEQAFLNDKLD 120 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ADLI + +E R +++ + GE S+ +D + ++R+++EA +DF +EE + Sbjct: 121 LAQAEAIADLIDATSEQAARSALKSLQGEFSNKINALVDSVIYLRTYVEAAIDFPDEE-I 179 Query: 185 QNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 + ++ LN+I+ + + QG I+R G K+VI G NAGKSSL NALA Sbjct: 180 DFLADGKIEAKLNEIIAQLDGVRREAKQGS---ILREGMKVVIAGRPNAGKSSLLNALAG 236 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 ++ AIVT+I GTTRDVL + ++G + I DTAG+R+ D VE+ GI+R + E+ AD Sbjct: 237 REAAIVTNIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIQRAWEEIAQADH 296 Query: 302 ILLLKEINSKKEISF-----------PKNIDFIFIGTKSDLYS-----TYTEEYDHL-IS 344 +LL+ + ++ F P N+ I K DL +++ + +S Sbjct: 297 VLLMIDSTEQQADQFRQEWAEFLAKLPANMPVTVIRNKVDLSGEQEGLIQVDDFTMIRLS 356 Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLD 403 + T G++ L +K + + + +RHL L +LE + + + Sbjct: 357 AQTKVGVDLLREHLKKSMGYQ-SSTEGGFLARRRHLQALETAAEHLERGHIQLTQFLAGE 415 Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++AE LR+ +L +ITG + LL IFS FCIGK Sbjct: 416 LLAEELRMVQNALSEITGQFTSDDLLGNIFSSFCIGK 452 >gi|332971197|gb|EGK10160.1| tRNA modification GTPase TrmE [Desmospora sp. 8437] Length = 458 Score = 243 bits (621), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 163/459 (35%), Positives = 250/459 (54%), Gaps = 24/459 (5%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DG 58 E +TI A+ST + I++IR+SGP +V + I + KK S +G G Sbjct: 2 ETDTIAAISTPVGEAGIAVIRVSGPEAIRVADRIYRGKKSLRDAESHTVHYGTIVNSGQG 61 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 +D+ L+ V SP +FT ED E HGG+ V +LEE+ RLA PGEF++RAF Sbjct: 62 NPIDEVLVTVMRSPRTFTREDVVEISCHGGMVPVQAVLEEVLS-AGARLAEPGEFTKRAF 120 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG+IDL +AE++ DLI S+T+ R++M+ G LS L Q ++ + + ++D+ Sbjct: 121 LNGRIDLSQAEAVIDLIRSKTDRAARVAMQQAEGRLSGLIQQLRREILETLAHLAVNVDY 180 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E D + + + +L ++ I+ + + G+I R G VI+G N GKSSL NA Sbjct: 181 PEY-DAEQLTEEIMLKKSRGIEERINHLLQTARQGKIYREGIGTVIVGRPNVGKSSLLNA 239 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 LA+++ AIVTDIPGTTRDV+ +++ G +++ DTAGIRET+D+VE+ G++R+ +E Sbjct: 240 LARENKAIVTDIPGTTRDVIEEYVNVRGIPLRLVDTAGIRETEDVVERIGVERSHQALEG 299 Query: 299 ADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYT-EEYDHLI-------- 343 ADLILLL + +K + +N I + K DL +E +LI Sbjct: 300 ADLILLLLNHGESLSEDDRKLLKMVRNQTVIVVVNKMDLPRRLDLQEVRNLIGEAPLITT 359 Query: 344 SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCG 401 S +G++ L I + L K + S+ RH+ L Q + + A E Sbjct: 360 SMIREQGIDPLEEAIVDLFLGGKAVAADATYVSNARHISLLKQAAQQVRDAIEGIEAGVP 419 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LD++ +L+ A SLG+I G E L+D IFS+FC+GK Sbjct: 420 LDMVEIDLKNAWQSLGEIIGDAVAEDLIDQIFSQFCLGK 458 >gi|304320459|ref|YP_003854102.1| tRNA modification GTPase [Parvularcula bermudensis HTCC2503] gi|303299361|gb|ADM08960.1| tRNA modification GTPase [Parvularcula bermudensis HTCC2503] Length = 421 Score = 243 bits (620), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 145/440 (32%), Positives = 241/440 (54%), Gaps = 39/440 (8%) Query: 18 SAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFT 76 + I++ RLSGP+ ++ + + + +P R+A+ RY +G +LD GL++ FP P S T Sbjct: 4 AGIAVWRLSGPASGEILDRLSGGRPRPQARRATHRYLVTPEGALLDDGLVLWFPGPASAT 63 Query: 77 GEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLIS 136 GED E H+HG +AV + L+ + R A PGEF+ R F +GK+ LL E LA L+ Sbjct: 64 GEDMVELHLHGSLAVARALPPILSNL-GARAAMPGEFTLRGFHHGKMSLLAVEGLAALLD 122 Query: 137 SETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDI 196 SETE QRR +M +SGE S+ +W L R+ +E+ +DF +EED+ ++EV + Sbjct: 123 SETEAQRRQAMRTLSGEGSAQVARWRAHLLRARAVLESAIDFPDEEDIPAQIAEEVRPAL 182 Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 + L ++ + +++ K +R G ++ I+G NAGKS+L NAL K+D A+V+ +PGTTRD Sbjct: 183 VALYGELQTALAEAKDARRLREGIEVAIIGPPNAGKSTLLNALLKEDRALVSSLPGTTRD 242 Query: 257 VLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 +++ L++ G +V+I DTAGIRE T D +E+ G++R+ ADL++ + Sbjct: 243 IVSARLEIGGRVVEILDTAGIREATTDDIERAGVERSRDAAARADLVIACSPAGAP---- 298 Query: 316 FPKNID----FIFIGTKSDLYSTYTEE-----------YDHLISSFTGEGLEELINKIKS 360 P ID + + TK+D ++ +D +++FT ++ Sbjct: 299 -PPAIDTDAQILAVATKADEGRAASDPRLAISVHSGANWDRFLTAFT-----------EA 346 Query: 361 ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKIT 420 +L+ L F+ + + + V + A L + +++AE +R +L +T Sbjct: 347 VLALGGGGL-FAYERQRLLIGEAATAVERILAADLADP----ELLAEQVRAIGHTLDALT 401 Query: 421 GCVDVEQLLDIIFSKFCIGK 440 G + E +L IFS FCIGK Sbjct: 402 GKIGTEDILGEIFSAFCIGK 421 >gi|187925952|ref|YP_001897594.1| tRNA modification GTPase TrmE [Burkholderia phytofirmans PsJN] gi|187717146|gb|ACD18370.1| tRNA modification GTPase TrmE [Burkholderia phytofirmans PsJN] Length = 464 Score = 243 bits (620), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 154/465 (33%), Positives = 245/465 (52%), Gaps = 27/465 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLS----GPSCFQVCEFICKKKKPFPRKASLRYFFGL 56 + + + I A++T I ++R+S G + Q + PR AS F + Sbjct: 2 LTTDSDPIVAIATAPGRGGIGVVRISFGRAGEAAAQPLMQALTGQTLAPRHASYVPFLDV 61 Query: 57 DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEF 113 G LD+G+ + FP+P S+TGE E HGG V+ +L+ + + LRLA PGEF Sbjct: 62 SGNALDRGIALYFPAPHSYTGEHVLELQGHGGPVVLQLVLQRCIDAGRAFGLRLAEPGEF 121 Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173 +RRAF N K+DL +AE++ADLI + TE R + + G S ++ + +R +E Sbjct: 122 TRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRDIHALVEDVITLRMLVE 181 Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233 A LDF EEE + + + + ++ ++ +S+ + G ++R G +V+ G N GKS Sbjct: 182 ATLDFPEEE-IDFLEAADARGKLTRIRERLAHVLSEARQGALLREGLSVVLAGQPNVGKS 240 Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293 SL NALA ++AIVT I GTTRD + + +EG + + DTAG+R+T+D VEK GI RT+ Sbjct: 241 SLLNALAGAELAIVTPIAGTTRDKVAQTIQIEGIPLHVIDTAGLRDTEDEVEKIGIARTW 300 Query: 294 LEVENADLILLLKEINSKKEIS-------FPKNIDFIFIGTKSDL--YSTYTEEYDH--- 341 E+E AD++L L + + FP+ + + + K+DL + T+ D Sbjct: 301 SEIERADVVLHLLDARTGMTAEDDAIAGRFPRGVPVVRVLNKTDLTGLAPATQALDADLE 360 Query: 342 ----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--L 395 +S+ G+G+ L +++ I + + + +RHL L +L A+ Sbjct: 361 LSEVRLSAKQGDGVALLRDELLRIAGWQAGAESVYL-ARERHLIALRAAEEHLATAAAHA 419 Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++ LD+ AE LRLA L ITG + LL +IFS+FCIGK Sbjct: 420 DQNSQALDLFAEELRLAQDQLNSITGEFSSDDLLGVIFSRFCIGK 464 >gi|90194072|gb|ABD92597.1| ThdF [Volucribacter psittacicida] Length = 436 Score = 243 bits (620), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 153/435 (35%), Positives = 244/435 (56%), Gaps = 23/435 (5%) Query: 18 SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77 I I+R+SGP V + + K P PR A F DG ILD+G+ + F +P SFTG Sbjct: 6 GGIGILRVSGPQASNVAQAVLGKC-PKPRMADYLPFKDADGTILDQGIALYFKAPHSFTG 64 Query: 78 EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137 ED E HGG V++ +L+ + ++ ++RLA PGEFS +AF N K+DL +AE++ADLI + Sbjct: 65 EDVLELQGHGGQVVLDLLLKRILQLDHIRLARPGEFSEQAFLNDKLDLAQAEAIADLIDA 124 Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197 +E R +++ + GE S Q +D+L ++R+++EA +DF +EE + + ++ + Sbjct: 125 NSEQAARSALKSLQGEFSHKINQLVDQLIYLRTYVEAAIDFPDEE-IDFLADGKIEGHLQ 183 Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257 + ++ + K G ++R G K+VI G NAGKSSL NALA ++ AIVTDI GTTRD+ Sbjct: 184 QIIQQLNQVQQEAKQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDI 243 Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL-----------LK 306 L + ++G + I DTAG+R+ D VEK GI R + E++ AD+ILL ++ Sbjct: 244 LREHIHIDGMPLHIIDTAGLRDATDEVEKIGIHRAWNEIKQADMILLMLDSTAPDNQNME 303 Query: 307 EINSKKEISFPKNIDFIFIGTKSDLYSTY---TEEYDHLI---SSFTGEGLEELINKIKS 360 ++ S+ P +I I K DL ++ D+ + S+ T G++ L +K Sbjct: 304 KVRSEFLQKLPPHIPVTIIRNKVDLTGETEGIQQQQDYTVIQLSAKTQYGVDLLREHLKQ 363 Query: 361 ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLASVSLGK 418 + + + +RHL L++ ++L L + G +++AE LRLA + L + Sbjct: 364 AMGYQ-SGTEGGFLARRRHLEALNKAAQHLAQGHIQLTQYFAG-ELLAEELRLAQLQLSE 421 Query: 419 ITGCVDVEQLLDIIF 433 ITG + LL IF Sbjct: 422 ITGQFTSDDLLTHIF 436 >gi|89052690|ref|YP_508141.1| tRNA modification GTPase TrmE [Jannaschia sp. CCS1] gi|122499793|sp|Q28VZ6|MNME_JANSC RecName: Full=tRNA modification GTPase mnmE gi|88862239|gb|ABD53116.1| tRNA modification GTPase trmE [Jannaschia sp. CCS1] Length = 426 Score = 243 bits (620), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 155/435 (35%), Positives = 241/435 (55%), Gaps = 10/435 (2%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TIFA +T + ++IIR+SGP F+V + P + +LR G +LD+GL Sbjct: 2 QTIFAQATARGKAGVAIIRISGPDAFEVGRCLLGSL-PDAGRFALRDVRTPLGELLDRGL 60 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 ++VF +P SFTGED+ E +HG +AVV + + RLA+ GEF++RA N +DL Sbjct: 61 VLVFKAPASFTGEDTVELQLHGSVAVVRAVEGAIRSTGLARLADAGEFTQRALLNDMLDL 120 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 + E L LI SETE QR+++ G LS +W + + +EA +DF +E+ V Sbjct: 121 TQVEGLGRLIDSETEAQRKVAQASFEGGLSDKAERWRHLMIRAAALLEASIDFVDED-VP 179 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 EV + ++ L D++ ++ + E + +G+++ ILG NAGKS+L N LA +++A Sbjct: 180 VDVVPEVQSILMGLDTDLAKEVTGAVVAERLHDGFEVAILGAPNAGKSTLLNVLADREIA 239 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 I +D+PGTTRDV+ LD+ G V DTAGIR+T D++EK G++R AD+ +LL Sbjct: 240 ITSDVPGTTRDVIEARLDVSGLPVTFLDTAGIRDTVDVIEKIGVQRAIDRALAADVRILL 299 Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365 + + IDF + K+DL IS TG G++ L+ I+ +LS K Sbjct: 300 EIDDWILPDVLSDTIDFRY-RAKADLSDGEG------ISGRTGVGIDRLLTDIEGVLSEK 352 Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDV 425 + ++ +R ++ V ++ L++ AE++R A SL + G VDV Sbjct: 353 MSAVRSAVTDRQRGGIEAAR-VSLDAGVTVLSGTAELELAAEHIRHAQRSLDSVIGRVDV 411 Query: 426 EQLLDIIFSKFCIGK 440 E LL IFS+FCIGK Sbjct: 412 ENLLGEIFSRFCIGK 426 >gi|253681274|ref|ZP_04862072.1| tRNA modification GTPase TrmE [Clostridium botulinum D str. 1873] gi|253562512|gb|EES91963.1| tRNA modification GTPase TrmE [Clostridium botulinum D str. 1873] Length = 459 Score = 243 bits (620), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 170/462 (36%), Positives = 262/462 (56%), Gaps = 28/462 (6%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFP--RKASLRYFFGLD- 57 E +TI A++T S +SIIR+SG + F+ K + S+RY F +D Sbjct: 2 KEFDTIAAIATNLGESGVSIIRVSGEKALSIVSKIFVGKNDRKLDDITTYSMRYGFIIDK 61 Query: 58 --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 G LD+ ++ P SFT ED E + HGG+ V ILEE+ K RLA+PGEF++ Sbjct: 62 VSGEKLDEVIVSYMKGPRSFTAEDVVEINCHGGVIVTKRILEEVIK-SGARLASPGEFTK 120 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG+IDL +AE++ DLI+++TE+ + ++E G+LS DKL I + IEA Sbjct: 121 RAFLNGRIDLSQAEAVIDLINAKTELSAKSALEQSEGKLSKEISHLRDKLLEIIAHIEAT 180 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +D+ E+ D++ +S++ D+ + +I +S G+I+R G VI+G N GKSS+ Sbjct: 181 VDYPED-DLEEVTSEKGKEDVDKIITEIDKLLSSANEGKILREGLNTVIVGKPNVGKSSI 239 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 NAL + AIVTDIPGTTRDV+ + +EG +KI DTAGIRETDDIVEK G++++ + Sbjct: 240 LNALLMETRAIVTDIPGTTRDVIEEYMSIEGIPIKIVDTAGIRETDDIVEKIGVEKSREK 299 Query: 296 VENADLILLL----KEINS--KKEISFPKNIDFIFIGTKSDL--------YSTYTEEYDH 341 + N+DL +L+ +E+++ K+ I F K+ +I + K DL + +Y Sbjct: 300 ILNSDLTVLVLDSSRELDAEDKEIIDFIKDKKYIVLLNKIDLDTKLDKGSLNKLNSDYII 359 Query: 342 LISSFTGEGLEELINKIKSILSN---KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398 IS+ TG+GL+ IK + + K + + HK L ++ + A E Sbjct: 360 DISAKTGKGLDRFKEVIKELFFSGEVTSKDVMITNTRHKEALIRAKNSLIAGKEAL--EN 417 Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D+ + ++R A +LG+I G E ++D IFSKFC+GK Sbjct: 418 TFAIDLASIDIRDAWKNLGEINGDTVEEDMIDKIFSKFCLGK 459 >gi|152998479|ref|YP_001343314.1| tRNA modification GTPase TrmE [Marinomonas sp. MWYL1] gi|205415779|sp|A6W3V0|MNME_MARMS RecName: Full=tRNA modification GTPase mnmE gi|150839403|gb|ABR73379.1| tRNA modification GTPase TrmE [Marinomonas sp. MWYL1] Length = 459 Score = 243 bits (619), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 163/458 (35%), Positives = 254/458 (55%), Gaps = 28/458 (6%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63 +++TI A +T + IIRLSGP + + I + P PR A F LD+ Sbjct: 9 DQDTIAAQATAPGRGGVGIIRLSGPKSLAIAKQIIGFE-PKPRYAHYVPFKTTGQEQLDE 67 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 G+ + FP P SFTGED E HGG +++ +L + RLA PGEFS RAF N K+ Sbjct: 68 GIALYFPGPNSFTGEDVFELQGHGGPVIMDMLLSHCVAL-GARLARPGEFSERAFMNDKM 126 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL +AE++ADLI S +E + ++ + G S + ++ L H+R ++EA +DF EEE Sbjct: 127 DLTQAEAIADLIDSTSEQAAKCALRSLQGAFSKRVDELVEALIHLRIYVEAAIDFPEEE- 185 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 + +V ++ ++ ++ + + G +IR G +VI G NAGKSSL NAL+ K+ Sbjct: 186 IDFIGDGKVAAELAGIQAKLAEVLKEANQGALIREGMNVVIAGRPNAGKSSLLNALSGKE 245 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303 AIVT+I GTTRDVL + L+G + I DTAG+R++ D VE+ GI+R + E+ AD IL Sbjct: 246 SAIVTNIEGTTRDVLREHIHLDGMPLHIIDTAGLRDSPDEVERIGIQRAWDEISKADRIL 305 Query: 304 LL---KEINSK--KEISFPKNID-------FIFIGTKSDLY--STYTEEYDHL----ISS 345 ++ + I+SK EI +P+ ++ + K DL T E + +S+ Sbjct: 306 MMVDSQSIDSKDPNEI-WPEFMEKLGDTKHLTLVRNKVDLTKEGTGIETVSGVPVVSLSA 364 Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL--- 402 TGEG+ +L +K+++ I + +RH+ L++ R+L+ NE+ G Sbjct: 365 KTGEGVTDLTEHLKAVMGFDSTTEGGFI-ARRRHIEALNKANRFLDAG--NEQLHGYGAG 421 Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE+L+ A +L +ITG + LL IF FCIGK Sbjct: 422 ELLAEDLKEAQQALSEITGAFTSDDLLGRIFGSFCIGK 459 >gi|73543138|ref|YP_297658.1| tRNA modification GTPase TrmE [Ralstonia eutropha JMP134] gi|123623715|sp|Q46VM0|MNME_RALEJ RecName: Full=tRNA modification GTPase mnmE gi|72120551|gb|AAZ62814.1| tRNA modification GTPase trmE [Ralstonia eutropha JMP134] Length = 475 Score = 243 bits (619), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 163/478 (34%), Positives = 249/478 (52%), Gaps = 41/478 (8%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M I A++T I ++R+SGP V IC + PR A+ F G++ Sbjct: 1 MTAPLPPIAAIATAPGRGGIGVVRVSGPDVRPVMHAICGQALK-PRHATYLPFLDGHGKV 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN---LRLANPGEFSRRA 117 +D GL + FP P S+TGE+ E HGG V+ +L + + LRLA PGEF+RRA Sbjct: 60 IDHGLALYFPGPNSYTGEEVLELQGHGGPVVMQMLLTRCLQAGHGIGLRLAEPGEFTRRA 119 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F N K+DL +AE++ADLI + TE R + M GE S ++K+ H+R +EA LD Sbjct: 120 FLNDKLDLAQAEAVADLIEASTEAAARSAARSMEGEFSHAIHTLVEKVIHLRMLVEATLD 179 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 F EEE + + + + ++ND+ + ++Q + G ++R G +V+ G N GKSSL N Sbjct: 180 FPEEE-IDFLEASDARGQLATIRNDLGNVLAQARQGALLREGLSVVLAGQPNVGKSSLLN 238 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEV 296 ALA ++AIVT I GTTRD + + +EG + I DTAG+R E D VE+ GI+RT+ + Sbjct: 239 ALAGAELAIVTPIAGTTRDRVKETIQIEGIPLHIIDTAGLRDEATDEVERIGIERTWDAI 298 Query: 297 ENADLILLLKE---------------INSKKEISFPKNIDFIFIGTKSDLYST-----YT 336 AD++L L + I+ + P + + K D+ T ++ Sbjct: 299 RRADIVLHLVDATDYLRHGLSEIDDAIDDRLSGQLPPGAPIVRVVNKIDVAPTVGGMMFS 358 Query: 337 EEYDHL------------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384 H+ IS+ TG G+E L ++ ++ + + + +RHL L Sbjct: 359 GNRPHVVAANGPNPTEIWISARTGSGIELLRKELLRLVGWQSGN-EGTFLARERHLTALR 417 Query: 385 QTVRYLEMAS-LNEKDC-GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 Q +L++A+ +E+ LD+ AE LRLA L ITG + LL IF++FCIGK Sbjct: 418 QAQSHLDVAAEQSERQAQALDLFAEELRLAQEHLNSITGEFTSDDLLGTIFTRFCIGK 475 >gi|209519685|ref|ZP_03268474.1| tRNA modification GTPase TrmE [Burkholderia sp. H160] gi|209499902|gb|EDZ99968.1| tRNA modification GTPase TrmE [Burkholderia sp. H160] Length = 464 Score = 243 bits (619), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 155/465 (33%), Positives = 246/465 (52%), Gaps = 27/465 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLS----GPSCFQVCEFICKKKKPFPRKASLRYFFGL 56 + + + I A++T I ++R+S G + Q + PR AS F Sbjct: 2 LTTDSDPIVAIATAPGRGGIGVVRISFGRAGEAAAQPLMQALTAQTLAPRHASYVPFLDA 61 Query: 57 DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEF 113 G LD+G+ + FP+P S+TGE E HGG V+ +L+ + + LRLA PGEF Sbjct: 62 SGNPLDRGIALYFPAPHSYTGEHVLELQGHGGPVVLQLVLQRCIDAGRAFGLRLAEPGEF 121 Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173 +RRAF N K+DL +AE++ADLI + TE R + + G S ++++ +R +E Sbjct: 122 TRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRDIHALVEEVITLRMLVE 181 Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233 A LDF EEE + + + + ++ ++ +S+ + G ++R G +V+ G N GKS Sbjct: 182 ATLDFPEEE-IDFLEAADARGKLTRIRERLAHVLSEARQGALLREGLSVVLAGQPNVGKS 240 Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293 SL NALA ++AIVT I GTTRD + + +EG + + DTAG+RET+D VEK GI+RT+ Sbjct: 241 SLLNALAGAELAIVTPIAGTTRDKVAQTIQIEGIPLHVIDTAGLRETEDEVEKIGIERTW 300 Query: 294 LEVENADLILLLKEINSKKEIS-------FPKNIDFIFIGTKSDL--YSTYTEEYDH--- 341 E+E AD++L L + + FP+ + + + K+DL + T+ D Sbjct: 301 GEIERADVVLHLLDARAGMTADDETIAGRFPRGVPVVRVLNKTDLTGLAPATQALDADLE 360 Query: 342 ----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN- 396 +S+ G+G+ L +++ I + + + +RHL L +L A+ + Sbjct: 361 LSEVRLSAKKGDGVALLRDELLRIAGWQAGAESVYL-ARERHLIALRAADEHLATAAAHA 419 Query: 397 -EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + LD+ AE LRLA L ITG + LL +IFS+FCIGK Sbjct: 420 EQNAQALDLFAEELRLAQDQLNSITGEFSSDDLLGVIFSRFCIGK 464 >gi|118594209|ref|ZP_01551556.1| tRNA modification GTPase [Methylophilales bacterium HTCC2181] gi|118439987|gb|EAV46614.1| tRNA modification GTPase [Methylophilales bacterium HTCC2181] Length = 450 Score = 243 bits (619), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 162/459 (35%), Positives = 254/459 (55%), Gaps = 28/459 (6%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M TI A+ST I I+RLSGP + + IC + PR+A F+ D I Sbjct: 1 MLRAANTIAAISTAGGVGGIGIVRLSGPEALAIAKTICSGQ-IVPREAGFHNFYNADQEI 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+G+++ FP+P+SFTGED EF HGG V+N +L L RLA PGEF+RRA+ N Sbjct: 60 VDQGVILFFPNPKSFTGEDVIEFQGHGGQTVLNAVLN-LCIDKGARLAEPGEFTRRAYLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AES+ D+I++ T + + + +SG+ S + KL +R F+EA LDF E Sbjct: 119 NKMDLAQAESVIDVINATTIEAVKSAAQSLSGKFSIKINGLLKKLIELRVFVEACLDFPE 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQ----GKLGEIIRNGYKIVILGHSNAGKSSLF 236 EE + V++ + N+I++ + Q + G++++ G +V++G N GKSSL Sbjct: 179 EE-IDFIEQGNVIDRL----NNIAAEVDQILLVARHGQLLKEGANVVLIGQPNVGKSSLL 233 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N L ++ AIVTD+PGTTRD + ++ + G + + DTAG+R TDD VE GI +T+ + Sbjct: 234 NQLVGEEKAIVTDVPGTTRDPIASNISIHGIPLNVFDTAGLRTTDDQVELLGISKTWESI 293 Query: 297 ENADLILLLKEI-----NSKKEI--SFPKNIDFIFIGTKSDLYSTYTEEYDH------LI 343 + + + ++L + N +K+I PKNI+ ++I K DL + +H I Sbjct: 294 KGSHIAMVLVDATKGAGNYEKDIISRLPKNIEILWIYNKIDLTDDKPKAVEHNQNKSIYI 353 Query: 344 SSFTGEGLEELINKIKSILS--NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401 S+ G++ L + IL+ + + + RH+ L+ V+ + L KD Sbjct: 354 SAKLDLGIDLLREALYEILTGGSAYNNNETVYIARSRHIDALN-AVKASIIMGLAHKDSS 412 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE L LA +L ITG + LL IFS+FCIGK Sbjct: 413 -ELLAEELMLAQNALSSITGEFSSDDLLGKIFSEFCIGK 450 >gi|90194074|gb|ABD92598.1| ThdF [Avibacterium gallinarum] Length = 435 Score = 242 bits (618), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 155/433 (35%), Positives = 250/433 (57%), Gaps = 24/433 (5%) Query: 20 ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGED 79 + I+R+SGP QV E + K PR A+ F +DG +LD+G+ + F +P SFTGED Sbjct: 8 VGILRVSGPLAQQVAEAVLGKNLK-PRVANYLPFKDIDGTVLDQGIALFFKAPNSFTGED 66 Query: 80 SAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET 139 E HGG +++ +L+ + ++ +RLA PGEFS +AF N K+DL +AE++ADLI + + Sbjct: 67 VLELQGHGGQIILDLLLKRILQVKGVRLARPGEFSEQAFLNDKLDLAQAEAIADLIDATS 126 Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFL 199 E R +++ + GE S+ Q +D + ++R+++EA +DF +EE + + ++ + + Sbjct: 127 EQAARSALKSLQGEFSNKINQLVDDVIYLRTYVEAAIDFPDEE-IDFLADGKIEAKLREI 185 Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259 +++ ++ K G I+R G K+VI G NAGKSSL NALA ++ AIVTDI GTTRDVL Sbjct: 186 IAQLAAVRAEAKQGAILREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLR 245 Query: 260 IDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD-LILLLKEINSKKEIS--- 315 + ++G + I DTAG+R+ D VE+ GI+R + E+E AD +IL+L +S++ ++ Sbjct: 246 EHIHIDGMPLHIIDTAGLRDATDEVERIGIRRAWDEIEQADRIILMLDSTDSEENLAQVR 305 Query: 316 ------FPKNIDFIFIGTKSDL---YSTYTEEYDHL---ISSFTGEGLEELINKIKSILS 363 P NI + K+DL T +E+ +S+ T G++ L +K + Sbjct: 306 SEFLAKLPNNIPLTIVRNKADLSGEAETISEQNGQTSISLSAKTQVGVDLLREHLKQAMG 365 Query: 364 -NKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDIIAENLRLASVSLGKIT 420 N + F + +RHL L Q +L+ + L E G +++AE LR+ L +IT Sbjct: 366 YNTSAEGGFL--ARRRHLEALEQADIHLQAGLIQLTEFYAG-ELLAEELRMVQNHLSEIT 422 Query: 421 GCVDVEQLLDIIF 433 G + LL IF Sbjct: 423 GQFTSDDLLGNIF 435 >gi|149185268|ref|ZP_01863585.1| tRNA modification GTPase [Erythrobacter sp. SD-21] gi|148831379|gb|EDL49813.1| tRNA modification GTPase [Erythrobacter sp. SD-21] Length = 424 Score = 242 bits (618), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 163/437 (37%), Positives = 247/437 (56%), Gaps = 17/437 (3%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TIFA+S+GA P+AI ++R+SGP E + P R+AS+R G DGR+LD+ L Sbjct: 3 DTIFALSSGAPPAAIGVVRISGPLAGDTVEAMTGAL-PGERRASVRAVKGADGRVLDRAL 61 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 ++ FP P++ TGED AEFH HGG AV+ I +LA LR A PGEF+RRAF NG IDL Sbjct: 62 VLWFPGPKTATGEDLAEFHCHGGRAVIAAIEADLAARDGLRRAEPGEFTRRAFANGVIDL 121 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 EAE L DL+S+ETE+QRR + G LS W ++ + + +E+ LDF +E+DV Sbjct: 122 AEAEGLGDLLSAETELQRRAAEAAAGGGLSQKVEGWRSRVLGLSALVESQLDFGDEDDVG 181 Query: 186 NFSSKEVLN-DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 E+ + ++ L + + ++ E +++G ++V+ G N GKSSLFNAL + Sbjct: 182 EL--PEMFHVELSGLLGEWRRALDAPQI-ERLKDGIRVVLAGPPNTGKSSLFNALLDEGA 238 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLIL 303 AIV+ GTTRDV+ + L + DTAG+R ++ +E+ GI R ++E AD++L Sbjct: 239 AIVSAEAGTTRDVIERPIALGSVPFVLVDTAGLRDDSAGEIERIGIDRARDQLERADIVL 298 Query: 304 LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363 L + E P + IG + DL + D+ +S TG G+E+L+ + Sbjct: 299 WLGD-----EGRGPDGC--LEIGARVDLGDSRKTSPDYEVSVVTGSGIEDLVRGLIENSR 351 Query: 364 NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCV 423 N + P + + R L+ L+ ++E D L + E LRLA ++L ++ G Sbjct: 352 NLLPR-PGEVALNFRQTSALNDAHEALQ--GIDEGDDVL-LTGERLRLARLALDRLLGRH 407 Query: 424 DVEQLLDIIFSKFCIGK 440 E +LD +F +FCIGK Sbjct: 408 STEDMLDALFGRFCIGK 424 >gi|66826549|ref|XP_646629.1| GTP-binding protein 3 [Dictyostelium discoideum AX4] gi|74897384|sp|Q55C52|GTPB3_DICDI RecName: Full=tRNA modification GTPase gtpbp3, mitochondrial; AltName: Full=GTP-binding protein 3; Flags: Precursor gi|60474527|gb|EAL72464.1| GTP-binding protein 3 [Dictyostelium discoideum AX4] Length = 512 Score = 242 bits (618), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 171/495 (34%), Positives = 264/495 (53%), Gaps = 66/495 (13%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK------KKPFPRKASLRYFFGLD- 57 K+TI+ +S+G S ++IIR+SGP V + KK ++ R A+L F+ Sbjct: 25 KDTIYNLSSGVGKSGVAIIRVSGPQAETVIRKLIKKSDVDKNEEIKSRYATLSTFYNPKT 84 Query: 58 GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 LDKG+ I FPSP SFTGED EFH+HGG AV+ +E + + R + GEF++RA Sbjct: 85 NEQLDKGMFIWFPSPNSFTGEDVVEFHIHGGRAVIYETMEAIGLIEGTRPSEQGEFTKRA 144 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 FENGK+DL + E L+DL+ + T Q++++++ M G +S Y L +++EA +D Sbjct: 145 FENGKMDLTQVEGLSDLLDASTSFQKKIALKQMQGSISEFYLSLRKDLIRASAYMEAFID 204 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 F ++ ++ + N I+ +++ I H++ GK GE +R+G I I+G NAGKSSL N Sbjct: 205 FGDDAELDPEIVDQSRNRIISIRDKIQQHLNDGKRGERLRDGANIAIVGPPNAGKSSLIN 264 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEV 296 L + +IV+ I GTTRD++ + LD++GY V I DTAG+R T+D +E EGI+ Sbjct: 265 LLTNRKASIVSPIAGTTRDIVEVILDIDGYPVIIGDTAGLRNSTNDQIEIEGIEMAKDRF 324 Query: 297 ENADLIL-------LLKEINSKKEISFPKNID-------------FIFIGTKSDLYSTYT 336 N+D+ L L ++N + ++ N + I I KSDL + Sbjct: 325 NNSDIKLFLFDSFNLFSQLNQNQNLNSSFNFNEEIKNLFNFIDNETIIIFNKSDLLKQFD 384 Query: 337 --EEYDHL---------------------ISSFTGEGLEELINKIKSILSNKFKKLPFSI 373 +E+++L IS E +++L+N +K L N F+ Sbjct: 385 NLKEWENLKLNLLDNIKKSNNLNSIQSIEISCNNNENIKDLLNLLKLNLKNLFEIQDKES 444 Query: 374 P--SHKRHLYHLSQTV----RYLEMASLNEKDCGLDII--AENLRLASVSLGKITGCVDV 425 P + R+ HLS V RYL C D++ +E LR A +S+ +IT V++ Sbjct: 445 PLLTRLRYKQHLSDCVESLDRYLYY-------CEHDVVLASEELRSAILSISEITHSVNI 497 Query: 426 EQLLDIIFSKFCIGK 440 + LLDIIF FCIGK Sbjct: 498 DDLLDIIFKDFCIGK 512 >gi|124024977|ref|YP_001014093.1| tRNA modification GTPase TrmE [Prochlorococcus marinus str. NATL1A] gi|166234805|sp|A2C018|MNME_PROM1 RecName: Full=tRNA modification GTPase mnmE gi|123960045|gb|ABM74828.1| putative thiophen / furan oxidation protein [Prochlorococcus marinus str. NATL1A] Length = 464 Score = 242 bits (618), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 168/462 (36%), Positives = 257/462 (55%), Gaps = 31/462 (6%) Query: 5 KETIFAVSTGALPS--AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----D 57 ++TI A++T P +I+ IR+SG S + + I ++ + +G Sbjct: 8 EDTIAAIATAVSPGQGSIAAIRISGSSAIETSKNIVDVPG-IQDWSTHKVLYGHVTEENR 66 Query: 58 GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 + +D+ L++V P SFTGED E H HGGI V ILE + P++R A PGEFS+RA Sbjct: 67 KKYIDEVLILVMKGPRSFTGEDVVEIHCHGGIIPVQKILERILAFPSVRRAEPGEFSQRA 126 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 NG++ L +AES+++L+S+ + L++ G+ G + + +L + IEA +D Sbjct: 127 VLNGRLSLTQAESISELVSARSRKAAELAINGIEGNIQTTIQSIRKRLIEQLTEIEARID 186 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 F EED+ K V N+I+ +K D++ I K G +R+G K+ + G N GKSSL N Sbjct: 187 F--EEDLPLLDEKHVKNEIVAIKKDLNELIDNAKRGSWVRSGLKVALAGKPNVGKSSLMN 244 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 L+K++ AIVTD+PGTTRD+L ++ LEG V DTAG+R+T DI+EK GI RT + Sbjct: 245 RLSKQEKAIVTDLPGTTRDILESEIVLEGIPVTFIDTAGLRDTKDIIEKIGISRTKKTLI 304 Query: 298 NADLILLLKE-----INSKKEI--SFPKNIDFIFIGTKSDLYS--------TYTEEYDHL 342 +ADLI+L+ + N + I P NI + +G KSDL + Y + ++L Sbjct: 305 HADLIILIFDYSSGWTNEDESILKQLPVNIPLLIVGNKSDLMNDQSFEKVPKYILKKENL 364 Query: 343 I--SSFTGEGLEELINK-IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE-MASLNEK 398 + S+ TG G ++LIN +K S++ L ++ ++R L T LE + + ++ Sbjct: 365 VILSAKTGNGEDDLINYLLKKCGSSQTHGLDIAL--NERQLDLAKSTTESLENINKVFDE 422 Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D +LR A LG++TG E LLD IFSKFCIGK Sbjct: 423 KLPWDFWTIDLRQAINYLGELTGEDLTENLLDNIFSKFCIGK 464 >gi|161526321|ref|YP_001581333.1| tRNA modification GTPase TrmE [Burkholderia multivorans ATCC 17616] gi|189348964|ref|YP_001944592.1| tRNA modification GTPase TrmE [Burkholderia multivorans ATCC 17616] gi|160343750|gb|ABX16836.1| tRNA modification GTPase TrmE [Burkholderia multivorans ATCC 17616] gi|189332986|dbj|BAG42056.1| tRNA modification GTPase [Burkholderia multivorans ATCC 17616] Length = 464 Score = 242 bits (618), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 158/466 (33%), Positives = 250/466 (53%), Gaps = 35/466 (7%) Query: 4 EKETIFAVSTGALPSAISIIRLS-----GPSCFQVCEFICKKKKPFPRKASLRYFFGLDG 58 + + I A++T A I ++R+S + + + +C ++ PR AS F G Sbjct: 5 DSDPIVAIATAAGRGGIGVVRVSFGRGGEAAALPMIDALCGQRLA-PRHASYVPFLDAQG 63 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEFSR 115 LD+G+ + FP+P S+TGE E HGG V+ +L+ ++ + LRLA PGEF+R Sbjct: 64 APLDRGIALYFPAPHSYTGEHVLELQGHGGPIVMQLLLQRCLDVGRAVGLRLAEPGEFTR 123 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF N K+DL +AE++ADLI + TE R + + G S +D + ++R +EA Sbjct: 124 RAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRQIHALVDDVINLRMLVEAT 183 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 LDF EEE + + + + ++ ++ + + G ++R G +V+ G N GKSSL Sbjct: 184 LDFPEEE-IDFLEAADARGKLAKIRAQLAHVLGDARQGALLREGLSVVLAGQPNVGKSSL 242 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 NALA ++AIVT I GTTRD + + +EG + I DTAG+RET+D VE+ GI RT+ E Sbjct: 243 LNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRETEDEVERIGIARTWSE 302 Query: 296 VENADLILLLKEINSKKEIS---------FPKNIDFIFIGTKSDL------YSTYTEEYD 340 +E AD++L L ++S+ ++ FP + + + K+DL + E D Sbjct: 303 IERADVVLHL--LDSRTGMTADDDAIAARFPAGVPVVRVLNKTDLTGVPASVAHPAAEGD 360 Query: 341 ----HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS-- 394 HL S+ G+G++ L ++ I + + + +RHL L +L A+ Sbjct: 361 LTEVHL-SAKRGDGIDLLRAELLRIAGWQAGAEGVYL-ARERHLMALRAAQDHLARAAEH 418 Query: 395 LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++ LD+ AE LRLA L ITG + LL +IFS+FCIGK Sbjct: 419 AEQRAQSLDLFAEELRLAQEQLNAITGEFTSDDLLGVIFSRFCIGK 464 >gi|90194140|gb|ABD92631.1| ThdF [Pasteurella canis] Length = 436 Score = 242 bits (618), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 161/443 (36%), Positives = 244/443 (55%), Gaps = 41/443 (9%) Query: 19 AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGE 78 I I+R+SGP +V + K P PR A F LDG ILD+G+ + F +P SFTGE Sbjct: 7 GIGILRVSGPKSVEVANAVLGKC-PKPRVADYLPFKDLDGTILDQGIALYFKAPHSFTGE 65 Query: 79 DSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSE 138 D E HGG V++ +L+ + ++ +RLA PGEFS +AF N K+DL +AE++ADLI + Sbjct: 66 DVLELQGHGGQVVLDLLLKRILQIEGVRLARPGEFSEQAFLNDKLDLAQAEAIADLIDAS 125 Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LND 195 +E R +++ + GE S+ Q +D + ++R+++EA +DF +EE + + ++ LN+ Sbjct: 126 SEQAARSALKSLQGEFSNKVNQLVDSVIYLRTYVEAAIDFPDEE-IDFLADGKIEAHLNE 184 Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255 I+ + + S+ K G I+R G K+VI G NAGKSSL NALA ++ AIVTDI GTTR Sbjct: 185 IILQLDKVR---SEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTR 241 Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL---KEINSKK 312 DVL + ++G + I DTAG+RE D VE+ GI R + E+E AD ILL+ E N++ Sbjct: 242 DVLREHIHIDGMPLHIIDTAGLREATDEVERIGIVRAWSEIEQADRILLMLDSTEPNNQD 301 Query: 313 ----EISF----PKNIDFIFIGTKSDL------------YSTYTEEYDHLISSFTGEGLE 352 + F P I I K+DL Y+ T +S+ T +G++ Sbjct: 302 LETIRVEFLAKLPATIPITMIRNKADLSGEIEGLKEQSGYTVIT------LSAKTQQGVD 355 Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLR 410 L +K + + + +RHL L + +L L + G +++AE LR Sbjct: 356 LLREHLKQSMGYQ-TNTEGGFLARRRHLEALEKAAHHLRQGHIQLTQFYAG-ELLAEELR 413 Query: 411 LASVSLGKITGCVDVEQLLDIIF 433 + L +ITG + LL IF Sbjct: 414 MVQNHLSEITGQFTSDDLLGNIF 436 >gi|262277801|ref|ZP_06055594.1| tRNA modification GTPase TrmE [alpha proteobacterium HIMB114] gi|262224904|gb|EEY75363.1| tRNA modification GTPase TrmE [alpha proteobacterium HIMB114] Length = 445 Score = 242 bits (618), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 162/451 (35%), Positives = 250/451 (55%), Gaps = 28/451 (6%) Query: 9 FAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIV 68 +A+ST S I+IIR+SG S Q+ I + PR A L+ F+ +G ++D+G+LI Sbjct: 4 YALSTPPGVSGIAIIRISGDSALQIANQITRTVIDHPRSALLKSFYDQEGELIDEGILIW 63 Query: 69 FPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEA 128 +P +S+TGE E H+HG AV+N +LE+L + RLA PGEF++ A++N +I+L EA Sbjct: 64 YPEGQSYTGEHLIEIHIHGSKAVINKLLEDLGDRKDCRLAEPGEFTKTAYQNNRINLYEA 123 Query: 129 ESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNF- 187 ES+ADL+ +ETE QR ++ + S + +W + + + S EA +DFSEE+ + Sbjct: 124 ESIADLLQAETEAQRIQALRLKNS--SPKFLEWRETILDVLSKTEASIDFSEEDLPEGIL 181 Query: 188 -SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246 +++E + I+ +DI + + +GEIIR+G+KI I+G NAGKSS N L K+ AI Sbjct: 182 KNNEEKIKSIV---SDIDEMLDE-TMGEIIRDGFKIAIIGPPNAGKSSFLNLLVKRQAAI 237 Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306 V+ I GTTRD++ + + Y V ++DTAGIR + +EK G++ A+L +L+ Sbjct: 238 VSSIKGTTRDIIEVKYHINNYPVILTDTAGIRNAKNKIEKTGVELALNASNEANLDILIL 297 Query: 307 EINSKKEISFPKNI------DFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEEL------ 354 + KK PKNI + I K D S ++ ++ + + L E+ Sbjct: 298 DGTEKK---IPKNILKLITHKTLIILNKKDKKSFNAKKIIKVLKGYKFQDLIEVSIKNKT 354 Query: 355 -INK----IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENL 409 INK +K I+S ++ S RH L + L K ++ AE L Sbjct: 355 GINKLNLRLKKIVSEIDTAQSTTLISRVRHRALLKKCSNRLHDFLKISKSDEVEKAAEEL 414 Query: 410 RLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 RLAS +LG I G + VE++L IF FCIGK Sbjct: 415 RLASNNLGHIVGFIGVEEILGKIFQDFCIGK 445 >gi|157694475|ref|YP_001488937.1| tRNA modification GTPase TrmE [Bacillus pumilus SAFR-032] gi|205829058|sp|A8FJG0|MNME_BACP2 RecName: Full=tRNA modification GTPase mnmE gi|157683233|gb|ABV64377.1| tRNA modification GTP-binding protein TrmE [Bacillus pumilus SAFR-032] Length = 459 Score = 242 bits (618), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 164/461 (35%), Positives = 260/461 (56%), Gaps = 29/461 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK--KKKPFPRKASLRYFFG--LDGR-- 59 +TI A+ST AI+IIRLSGP Q+ + + K K+K S +G +D R Sbjct: 2 DTIAAISTPMGEGAIAIIRLSGPEAVQIADRMYKGPKEKKLVSVDSHTIHYGHIVDARTD 61 Query: 60 -ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 ++++ ++ V +P++FT ED E + HGGI VN +L+ LA RLA PGEF++RAF Sbjct: 62 QVIEEVMVSVLRAPKTFTREDVIEINCHGGIVTVNKVLQ-LALREGARLAEPGEFTKRAF 120 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG+IDL +AE++ DLI ++T+ +++ M G LS L + ++ + IE ++D+ Sbjct: 121 LNGRIDLSQAEAVMDLIRAKTDRAMNVAITQMEGRLSGLVQRLRGEILETLAHIEVNIDY 180 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E +DV+ + + ++ +K +I S +S G+I+R G VI+G N GKSSL N+ Sbjct: 181 PEYDDVEEMTHRVLVEKATSVKKEIESLLSTSHQGKILREGLSTVIIGRPNVGKSSLLNS 240 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L ++ AIVTDIPGTTRDV+ +++ G +++ DTAGIRET+DIVE+ G++R+ ++ Sbjct: 241 LVQETKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDIVERIGVERSRQVLKE 300 Query: 299 ADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTY-TEEYDHL------- 342 ADLILL+ +N +E+S +D I I K+DL E+ L Sbjct: 301 ADLILLV--LNYSEELSEEDIKLFEAVSGMDIIVIVNKTDLEPKLDVEKVKQLAKDRPVV 358 Query: 343 -ISSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKD 399 S +G++EL I+S+ + + + S+ RH+ L + +E A E D Sbjct: 359 TTSLLQEKGIDELEMAIQSLFFTGSIESGDLTYVSNTRHIALLQAAKQSIEDALEGIEMD 418 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +DI+ +L LG+I G E L+D +FS+FC+GK Sbjct: 419 VPIDIVQIDLTRCWEQLGEIIGDAVHESLIDQLFSQFCLGK 459 >gi|254797067|ref|YP_003081905.1| tRNA modification GTPase TrmE [Neorickettsia risticii str. Illinois] gi|254590313|gb|ACT69675.1| tRNA modification GTPase TrmE [Neorickettsia risticii str. Illinois] Length = 550 Score = 242 bits (617), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 135/314 (42%), Positives = 201/314 (64%), Gaps = 11/314 (3%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFI-CKKKKPFPRKASLRYFFGLDGRILDKGL 65 TI+A+ST S +++ R+SGP Q + + K+P PR A F + ++D+ L Sbjct: 3 TIYALSTVFGKSGVAVFRISGPDALQALKVLGLDIKRPRPRFAYFTRLFD-EQLLIDEVL 61 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 +I F SP SFTGED E H HG IAV+ I E+L+ + + A PGEF+RRA N ++DL Sbjct: 62 VIYFASPASFTGEDVVEVHSHGSIAVLRYISEKLSTL--FKPAEPGEFTRRAVLNNRMDL 119 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE + D+I++ET Q + + +SG+L+ Y K+ + S++EA +DF +EE + Sbjct: 120 TKAEGIIDIINAETREQLKQASRHLSGKLAEGYHSLRSKIIKVLSYLEAYIDFPDEE-IP 178 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 E+ IL ++ DIS +++ GK+GE IR G+ +VI+G NAGKS+LFN LAK+D+A Sbjct: 179 ETVLVEIQQSILAIQRDISHYLADGKVGEKIREGFSVVIVGKPNAGKSTLFNYLAKRDLA 238 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTDIPGTTRD+L + LD GY + +SDTAGI+ET D +EK GI R + AD+I+ L Sbjct: 239 IVTDIPGTTRDILEVRLDCHGYPLILSDTAGIQETCDAIEKMGIARALKKATEADVIVFL 298 Query: 306 KEI------NSKKE 313 ++I N+++E Sbjct: 299 RDITELHVTNARRE 312 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 70/125 (56%), Gaps = 9/125 (7%) Query: 320 IDFIFIGTKSDLYST---YTEEYDHL-ISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375 I + + TK+D+ T + ++ ++ +S + GEG++ L++KI I+S+ + I + Sbjct: 431 IPVVKVVTKADIAPTQLSFWQDKGYICVSVYEGEGMQLLLDKIFDIISSS--NIEAHIIT 488 Query: 376 HKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSK 435 RH L + +L N D +++ AE ++LA+ + +TG + ++ +LD IFS Sbjct: 489 RARHRLALENALEHL--GRFN-TDLPIELAAEEIKLAANHVASVTGEIKLDDILDEIFSS 545 Query: 436 FCIGK 440 FCIGK Sbjct: 546 FCIGK 550 >gi|169635752|emb|CAQ16330.1| t-RNA modification GTPase protein [Brevibacterium linens] Length = 457 Score = 242 bits (617), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 161/463 (34%), Positives = 248/463 (53%), Gaps = 29/463 (6%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+ ETI AV+T + I+R+SGP + +++ PR A F+G + + Sbjct: 1 MSVAAETIAAVATARGRGGVGIVRISGP-LASIAAKAFSERELKPRYAHYGPFYGENREV 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG V++ +L+ ++ RLA PGEFS RAF N Sbjct: 60 LDEGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCIQL-GCRLARPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + + R ++ + G S ++L +R ++EA +DF E Sbjct: 119 DKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSQRVHNLTEQLIGLRIYVEAAIDFPE 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + + VL + ++ ++S+ + + G ++R+G +VI G NAGKSSL NALA Sbjct: 179 EE-IDFLADGHVLGMLDKVRQELSTVMREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVT+I GTTRDVL + ++G + + DTAG+R+TDD VEK G++R + AD Sbjct: 238 GREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTDDQVEKIGVQRALKAIGEAD 297 Query: 301 LILLLKEINSKKE-----------ISFPKNIDFIFIGTKSDLYSTYTE----EYDHLISS 345 +LL+ + + + P I K+DL + H+ S Sbjct: 298 RVLLVVDATAPEADDPFALWPEFLQQRPDPAKVTLIRNKADLTGEDIRLQVCDDGHVTIS 357 Query: 346 FT------GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNE 397 + G+GLE L + +K+ + + + S + +RHL L LE A L Sbjct: 358 LSARSTDAGDGLELLRDHLKACMGYE-QTSESSFSARRRHLEALRHASDALEHGRAQLTL 416 Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G +++AE+LR A SLG+ITG + LL IFS CIGK Sbjct: 417 AGAG-ELLAEDLRQAQHSLGEITGAFR-DDLLGRIFSSLCIGK 457 >gi|71066697|ref|YP_265424.1| tRNA modification GTPase TrmE [Psychrobacter arcticus 273-4] gi|123647608|sp|Q4FPR8|MNME_PSYA2 RecName: Full=tRNA modification GTPase mnmE gi|71039682|gb|AAZ19990.1| tRNA modification GTPase trmE [Psychrobacter arcticus 273-4] Length = 478 Score = 242 bits (617), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 161/464 (34%), Positives = 254/464 (54%), Gaps = 34/464 (7%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66 TI A++T + +IRLSG + + + K + PR AS F+ DG ++D+GL+ Sbjct: 19 TIAAIATPLGRGGVGVIRLSGTRAYSIACTLTGKSEFKPRMASFCRFYQADGTVVDEGLV 78 Query: 67 IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126 + F P SFTGED E HGG+ + N +L + ++ + A GEFS RAF+N K+DL+ Sbjct: 79 LYFKGPHSFTGEDVIELQGHGGMILQNQLLARVFEL-GAKQAGAGEFSYRAFDNDKLDLV 137 Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186 +AE++AD I + + ++ +SGE S Q +++L H+R +EA +DF +EEDV Sbjct: 138 QAEAIADAIDATSAAAASSAIRSLSGEFSKKINQLLEQLIHLRLHVEAAIDFPDEEDVDF 197 Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246 S + + + I ++ K G+++R+G +V+ G NAGKSSL N LA ++ AI Sbjct: 198 LSDGVIQGKLEQTQEKIQHVLATAKQGQLLRDGIHVVLAGRPNAGKSSLLNRLAGQERAI 257 Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306 VTD+ GTTRD L + L G + ++DTAG+RET+D VE+ GI+R + AD++L++ Sbjct: 258 VTDVAGTTRDTLQETVVLNGLTLHLTDTAGLRETEDTVERIGIERARTAITQADILLMVY 317 Query: 307 EINS--KKEIS-----------FPKNIDFIFIGTKSDLYS--------------TYTEEY 339 ++ ++EI+ P+ + I KSDL + Y Y Sbjct: 318 DVTCDLEEEITPLQLAEQLFGELPEAKCLLIIANKSDLLNHNSSKGMTSISQEEIYNRGY 377 Query: 340 DHL-ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLN 396 + + +S TG G+++L+ + + + F S+ + RHL L +T YL A L Sbjct: 378 EQVNVSCETGAGIDDLVETLCAKVG--FHPPENSLIARTRHLDALRRTAEYLAEAHEQLT 435 Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G +++AE+LR A SLG+ITG + LL IF FCIGK Sbjct: 436 VFKAG-ELVAESLRQAQHSLGEITGEFSADDLLGKIFGSFCIGK 478 >gi|296417286|ref|XP_002838289.1| hypothetical protein [Tuber melanosporum Mel28] gi|295634217|emb|CAZ82480.1| unnamed protein product [Tuber melanosporum] Length = 608 Score = 241 bits (616), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 156/507 (30%), Positives = 265/507 (52%), Gaps = 73/507 (14%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLDG--RILDK 63 TI+A++T + +AI+++R+SGP+C V +C + P PRKA+LR + + +LD Sbjct: 102 TIYALATASGRAAIAVVRVSGPACLNVYSSLCPSRPLPTPRKATLRTLYRPNSPKEVLDP 161 Query: 64 GLLIVF-PSPESFTGEDSAEFHVHGGIAVVNGILEELAKM--PNL--RLANPGEFSRRAF 118 G L++F P+P S TGED E H+HGG A++ +L ++ + P L R A PGEF+RRAF Sbjct: 162 GALVLFFPAPNSHTGEDVLELHLHGGPAIIRAVLFSISTLSTPQLSIRPAGPGEFTRRAF 221 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 N ++ L + E+L D +S+ETE QR+LS++ + LS Y QW L R +EA +DF Sbjct: 222 TNNRLSLPQIEALGDTLSAETEQQRKLSVQATTSGLSRKYEQWRRMLLSARGELEAIIDF 281 Query: 179 SEEEDVQNFSSK---EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 SE++ ++ V++ + LK + H+ GE++R G + ++G NAGKSSL Sbjct: 282 SEDQQFDTAPAEMCSNVVSLVQELKPMLQLHVDNAVRGELLRGGISLALIGAPNAGKSSL 341 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD--DIVEKEGIKRTF 293 N + ++ AIV+ GTTRDV+ + +D+ GY+ ++DTAG+R+ + +EKEG+ R Sbjct: 342 LNRVVGREAAIVSGEAGTTRDVVDLSVDIGGYMALLADTAGLRKAELAGEIEKEGMWRAK 401 Query: 294 LEVENADLILLLKEINSKKE--------ISFPKNI---------------------DFIF 324 V+++ +++ + I ++ + + P + D + Sbjct: 402 KRVQDSHVVIAVLSIETRNDNNGNNTPYLPIPDEVLEVLREAQDQCKPVLIAVNKTDLLH 461 Query: 325 IGTKSDL-----------YSTYTEEYDHLISSF---TGEGLEELINKIKSIL-------- 362 + T L + + H I+ +G++ L+ + I Sbjct: 462 LPTGQTLPERFLNQITPHFPALQHTHIHGITCTHPSPSDGIQPLLRTLTQIFTQITTAEI 521 Query: 363 -SNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDII--AENLRLASVSLG 417 S+ L +I + R L + + YL+ + + +DC D++ AE LR A+ L Sbjct: 522 DSDASSSLGDAIGATDRQRRLLEECISYLDAFLDRIAGEDCETDMVVAAEELRFAAGCLA 581 Query: 418 KIT----GCVDVEQLLDIIFSKFCIGK 440 +IT G DVE++L ++F KFC+GK Sbjct: 582 QITGIGEGSGDVEEVLGVVFEKFCVGK 608 >gi|170593343|ref|XP_001901424.1| tRNA modification GTPase TrmE family protein [Brugia malayi] gi|158591491|gb|EDP30104.1| tRNA modification GTPase TrmE family protein [Brugia malayi] Length = 1828 Score = 241 bits (616), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 171/458 (37%), Positives = 262/458 (57%), Gaps = 46/458 (10%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRK---ASLRYFFGLDGRILDK 63 TIFA+S+GALP+AIS+IR+SG + E + ++K PR+ A++R DG ++D+ Sbjct: 1393 TIFAMSSGALPAAISVIRVSGKESRRCLEELTGREKILPRELFYANIRR----DGELIDR 1448 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 G+ + P P++ TGED AEF+VHG AVV+ +LE LA+ N++ A GEF++RAF NGK+ Sbjct: 1449 GMAVFLPGPKTSTGEDVAEFYVHGSRAVVDCLLEALAQFDNVQPAKAGEFTKRAFFNGKM 1508 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 L E +SLA L+++ T+ QRRL++ + G+ ++ +R+ +EA +DF ++ + Sbjct: 1509 TLHEVQSLAYLLAARTQRQRRLALH------RNTLGK--KQIIEVRASVEASIDFGDDVE 1560 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 Q + ++ I+ +++S Q K G +I G +IVILG +N GKSSLFN +A +D Sbjct: 1561 FQWEDIRVAMSSII---SELSCIQEQMKRGALINEGLRIVILGQTNVGKSSLFNHMANRD 1617 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD-DIVEKEGIKRTFLEVENADLI 302 +AIV++I GTTRD L I + L V I DTAGIRE D +E EGI+RT AD+I Sbjct: 1618 MAIVSNIEGTTRDSLEITVQLSSVPVTIIDTAGIREIPLDSLEAEGIQRTLRRAVEADII 1677 Query: 303 LLL----------KEINSKKEISFPKNIDFIFIG-TKSDLYSTYTE---EYDHL-ISSFT 347 +++ +++ S K +F+ K DL S + + IS + Sbjct: 1678 IVVLDSSICKDFERDVRSVLSWCNLKKDTPVFVALNKCDLRSVPNNILLPWPAISISCIS 1737 Query: 348 GEGLEELINKIKSILSNKFKKL-PFS----IPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402 GEG+ L+ I+ + +L P S + S + H + + + L A L KD Sbjct: 1738 GEGISSLLK----IICDYIDELCPISDNSALVSSQIHRLLVKEAISVLTKA-LKAKDVA- 1791 Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 I AE LR S + +++G V EQ+LD IFS FCIGK Sbjct: 1792 -ITAELLRDVSDCISEMSGIVVNEQILDEIFSSFCIGK 1828 >gi|293400090|ref|ZP_06644236.1| tRNA modification GTPase TrmE [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306490|gb|EFE47733.1| tRNA modification GTPase TrmE [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 443 Score = 241 bits (615), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 150/447 (33%), Positives = 259/447 (57%), Gaps = 17/447 (3%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD---GRIL 61 ++TI A+ST A+ AISIIR+SG + Q+ + +C + ++ Y F LD + Sbjct: 3 QDTIAAISTAAVDGAISIIRMSGDAAIQIVDSLCSIDLTSKKSHTISYGFILDPITKEEI 62 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121 D+ L+ VF +P++FT ED E + HGG V IL+ L M RLA PGEF+RRAF NG Sbjct: 63 DEVLVSVFRAPKTFTREDIVEINCHGGRYVTKKILQ-LCLMQGARLAEPGEFTRRAFLNG 121 Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181 +IDL +AE++ D+I +++ R+L+M G+ G + L +I + I + IE ++D+ E Sbjct: 122 RIDLTQAEAINDMILADSNESRKLAMHGIRGSVKKLLEPFIKNILDIIANIEVNIDYPEY 181 Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 +DV+ S++ +L I + I + + + G++++ G K I+G N GKSSL NAL + Sbjct: 182 DDVEMLSNEVILPKIQKWLSQIDQLLERAESGQMMKEGIKTAIIGKPNVGKSSLLNALLE 241 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 +D AIVT+I GTTRD++ + L G + + DTAGIRET+D+VEK GI+R+ +E+A L Sbjct: 242 EDKAIVTEIAGTTRDIVEGHIHLGGLTLNLIDTAGIRETEDVVEKIGIERSMKAIEDAQL 301 Query: 302 ILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELI 355 I+L+ + + ++ + +N I + K DL + + S +E LI Sbjct: 302 IILVLDASRPLDEEDQQLMQMTENKTRIIVYNKKDL----NQHIKGICISAQHHEIEPLI 357 Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG--LDIIAENLRLAS 413 +++ + + + + +++R + + + + + +++++ G LD++ +++ A Sbjct: 358 HEVHRLFDSHKIVIEEPVLANERQISQMMKAKKSM-LSAVDAIAMGLELDVVEIDIQEAY 416 Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440 +L +I G V E LLD +F+ FC+GK Sbjct: 417 TALKEILGEVHREDLLDTLFANFCLGK 443 >gi|11135197|sp|P57132|MNME_BUCAI RecName: Full=tRNA modification GTPase mnmE gi|25319358|pir||H84931 thiophene and furan oxidation protein thdF [imported] - Buchnera sp. (strain APS) gi|10038709|dbj|BAB12744.1| thiophene and furan oxidation protein thdF [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 452 Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 170/459 (37%), Positives = 250/459 (54%), Gaps = 34/459 (7%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 ETI A T SA+ I+R+SG ++ K P R A+ F + ILDKG+ Sbjct: 4 ETIVAQVTCPGKSAVGILRISGFQT-KIVAIKILGKIPLARFATYSNFLDENNEILDKGI 62 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + FP+P S TGED E HG +++ ++ + + N+R+A PGEFS RAF NGK+DL Sbjct: 63 SLWFPAPHSLTGEDVLELQGHGSPLIMDLLIRRILSINNIRMAKPGEFSERAFLNGKMDL 122 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE--- 182 ++AES+ DLI+SETE+ R S+ + G+ S + ++ + R IE+++DFSEEE Sbjct: 123 IQAESIDDLINSETELSARASLNSLQGKFSFFIKELMNLIIEFRINIESNIDFSEEEINI 182 Query: 183 ---DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 D+ N +E+ + L LK + G ++R G KIVI G N+GKSSL N L Sbjct: 183 NMQDIINIKFRELHDKFLKLKATVLK-------GSLLREGKKIVIAGLPNSGKSSLLNIL 235 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 + D AIVTDIPGTTRD+L D+ + G ++ DTAG+R+TDD VE+ GI R + + + Sbjct: 236 SYSDRAIVTDIPGTTRDLLYEDISINGVRCELIDTAGLRDTDDKVERIGIMRAWEMIRKS 295 Query: 300 DLILLL--KEINSKKEIS----FPKNI-----DFIFIGTKSDLYSTY--TEEYDHL---- 342 D +L + K ++ K+ F KNI F+ K+DL +E D Sbjct: 296 DHVLFVIDKTLSKSKQKKICDDFMKNILNNKTQVTFVLNKNDLIKDEFGIKEIDGTAFIS 355 Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV-RYLEMASLNEKDCG 401 IS+ TGEG+ L I I N + F + +RH+ L +L + + Sbjct: 356 ISARTGEGVNILREHIIKIEKNINNESVF--IARRRHIKQLDLAYDEFLTAENTWRESEN 413 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++++AE+L + S LG+I G E LL+ IFS FCIGK Sbjct: 414 IELLAESLSIISKFLGEIIGQCTSEDLLNHIFSSFCIGK 452 >gi|28952039|ref|NP_239858.2| tRNA modification GTPase TrmE [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681404|ref|YP_002467789.1| tRNA modification GTPase [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219681960|ref|YP_002468344.1| tRNA modification GTPase [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471078|ref|ZP_05635077.1| tRNA modification GTPase TrmE [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|219621693|gb|ACL29849.1| tRNA modification GTPase [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624247|gb|ACL30402.1| tRNA modification GTPase [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311086343|gb|ADP66424.1| tRNA modification GTPase TrmE [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087508|gb|ADP67587.1| tRNA modification GTPase TrmE [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 453 Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 170/459 (37%), Positives = 250/459 (54%), Gaps = 34/459 (7%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 ETI A T SA+ I+R+SG ++ K P R A+ F + ILDKG+ Sbjct: 5 ETIVAQVTCPGKSAVGILRISGFQT-KIVAIKILGKIPLARFATYSNFLDENNEILDKGI 63 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + FP+P S TGED E HG +++ ++ + + N+R+A PGEFS RAF NGK+DL Sbjct: 64 SLWFPAPHSLTGEDVLELQGHGSPLIMDLLIRRILSINNIRMAKPGEFSERAFLNGKMDL 123 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE--- 182 ++AES+ DLI+SETE+ R S+ + G+ S + ++ + R IE+++DFSEEE Sbjct: 124 IQAESIDDLINSETELSARASLNSLQGKFSFFIKELMNLIIEFRINIESNIDFSEEEINI 183 Query: 183 ---DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 D+ N +E+ + L LK + G ++R G KIVI G N+GKSSL N L Sbjct: 184 NMQDIINIKFRELHDKFLKLKATVLK-------GSLLREGKKIVIAGLPNSGKSSLLNIL 236 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 + D AIVTDIPGTTRD+L D+ + G ++ DTAG+R+TDD VE+ GI R + + + Sbjct: 237 SYSDRAIVTDIPGTTRDLLYEDISINGVRCELIDTAGLRDTDDKVERIGIMRAWEMIRKS 296 Query: 300 DLILLL--KEINSKKEIS----FPKNI-----DFIFIGTKSDLYSTY--TEEYDHL---- 342 D +L + K ++ K+ F KNI F+ K+DL +E D Sbjct: 297 DHVLFVIDKTLSKSKQKKICDDFMKNILNNKTQVTFVLNKNDLIKDEFGIKEIDGTAFIS 356 Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV-RYLEMASLNEKDCG 401 IS+ TGEG+ L I I N + F + +RH+ L +L + + Sbjct: 357 ISARTGEGVNILREHIIKIEKNINNESVF--IARRRHIKQLDLAYDEFLTAENTWRESEN 414 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++++AE+L + S LG+I G E LL+ IFS FCIGK Sbjct: 415 IELLAESLSIISKFLGEIIGQCTSEDLLNHIFSSFCIGK 453 >gi|94312541|ref|YP_585751.1| tRNA modification GTPase TrmE [Cupriavidus metallidurans CH34] gi|205415800|sp|Q1LH94|MNME_RALME RecName: Full=tRNA modification GTPase mnmE gi|93356393|gb|ABF10482.1| GTPase [Cupriavidus metallidurans CH34] Length = 475 Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 163/475 (34%), Positives = 242/475 (50%), Gaps = 49/475 (10%) Query: 8 IFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLI 67 I A++T I ++R+SGP V +C + PR A+ F G ++D GL + Sbjct: 8 IAAIATAPGRGGIGVVRVSGPDVGAVMRAVCGRALQ-PRHATYLPFLDARGNVIDHGLAL 66 Query: 68 VFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEFSRRAFENGKID 124 FP+P S+TGE+ E HGG V+ +L E K LR+A PGEF+RRAF N K+D Sbjct: 67 YFPAPNSYTGEEVLELQGHGGPVVMQMLLSRCLEAGKDIGLRVAEPGEFTRRAFLNDKLD 126 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ADLI + TE R + M GE S ++K+ H+R +EA LDF EEE + Sbjct: 127 LAQAEAVADLIEASTEAAARSAARSMEGEFSKAIHALVEKVIHLRMLVEATLDFPEEE-I 185 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + + ++ D++ + Q + G ++R G +V+ G N GKSSL NALA D+ Sbjct: 186 DFLEASNARGQLTRIREDLAGVLKQARQGSLLREGLSVVLAGQPNVGKSSLLNALAGSDL 245 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLIL 303 AIVT I GTTRD + + ++G + I DTAG+R + D VE+ GI+RT+ + +AD++L Sbjct: 246 AIVTPIAGTTRDRVRETIQIDGIPLHIIDTAGLRDDAADEVERIGIERTWEAIRHADIVL 305 Query: 304 LL---------------KEINSKKEISFPKNIDFIFIGTKSDLYST-----YTEEYDHL- 342 L I+ + P + + K DL + + H+ Sbjct: 306 HLIDAADYIEHGISETDDHIDDRLSGQLPPGSPIVRVINKIDLAPSVGAMGFGGNRPHVV 365 Query: 343 -----------ISSFTGEGLE----ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV 387 IS+ TG G++ EL+ I N+ L + +RHL L Sbjct: 366 AANGPNPTEIWISARTGAGIDLMRSELLRLIGWQSGNEGAFL-----ARERHLIALRNAE 420 Query: 388 RYLEM--ASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +LE+ AS ++ LD+ AE LRLA L ITG + LL IF++FCIGK Sbjct: 421 SHLELAEASASQHAQALDLFAEELRLAQDHLNSITGEFTSDDLLGTIFTRFCIGK 475 >gi|190171268|gb|ACE63704.1| ThdF [Cronobacter genomosp. 1] Length = 439 Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 157/439 (35%), Positives = 242/439 (55%), Gaps = 31/439 (7%) Query: 18 SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77 + I+R+SG V + + K P R A F DG LD+G+ + FP P SFTG Sbjct: 9 GGVGILRVSGQQARDVAQAVLGKL-PKARYADYLPFKDADGTALDQGIALWFPGPNSFTG 67 Query: 78 EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137 ED E HGG +++ +L+ + +P +R+A PGEFS RAF N K+DL +AE++ADLI + Sbjct: 68 EDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAEAIADLIDA 127 Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LN 194 +E R ++ + G S+ ++ LTH+R F+EA +DF +EE + S ++ LN Sbjct: 128 SSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEE-IDFLSDGKIEAQLN 186 Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254 +++ D+ + ++ + G ++R G K+VI G NAGKSSL NALA ++ AIVTDI GTT Sbjct: 187 EVI---GDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTT 243 Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314 RDVL + ++G + I DTAG+RE D VE+ GI+R + E+E AD +L + + + + Sbjct: 244 RDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVD-GTTTDA 302 Query: 315 SFPKNI--DFI----------FIGTKSDLYSTY---TEEYDH---LISSFTGEGLEELIN 356 + P I DFI + K+D+ +E H +S+ T EG++ L N Sbjct: 303 TDPAQIWPDFIARLPAKLPITVVRNKADVTGEQPGLSEVNGHSLIRLSARTNEGVDVLRN 362 Query: 357 KIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASV 414 +K + + + +RHL L +L+ A L G +++AE LRLA Sbjct: 363 HLKQSMGFD-TSMEGGFLARRRHLQALEDAANHLQQGKAQLLGAWAG-ELLAEELRLAQQ 420 Query: 415 SLGKITGCVDVEQLLDIIF 433 +L +ITG + LL IF Sbjct: 421 ALSEITGEFTSDDLLGRIF 439 >gi|190171304|gb|ACE63722.1| ThdF [Cronobacter sakazakii] Length = 439 Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 157/437 (35%), Positives = 242/437 (55%), Gaps = 31/437 (7%) Query: 20 ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGED 79 + I+R+SG V + + K P R A F DG LD+G+ + FP P SFTGED Sbjct: 11 VGILRVSGQQARDVAQAVLGKL-PKARYADYLPFKDADGTALDQGIALWFPGPNSFTGED 69 Query: 80 SAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET 139 E HGG +++ +L+ + +P +R+A PGEFS RAF N K+DL +AE++ADLI + + Sbjct: 70 VLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAEAIADLIDASS 129 Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LNDI 196 E R ++ + G S+ ++ LTH+R F+EA +DF +EE + S ++ LN++ Sbjct: 130 EQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEE-IDFLSDGKIEAQLNEV 188 Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 + D+ + ++ + G ++R G K+VI G NAGKSSL NALA ++ AIVTDI GTTRD Sbjct: 189 I---GDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRD 245 Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316 VL + ++G + I DTAG+RE D VE+ GI+R + E+E AD +L + + + + + Sbjct: 246 VLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVD-GTTTDATD 304 Query: 317 PKNI--DFI----------FIGTKSDLYSTY---TEEYDH---LISSFTGEGLEELINKI 358 P I DFI + K+D+ +E H +S+ T EG++ L N + Sbjct: 305 PAQIWPDFIARLSAKLPITVVRNKADVTGEQPGISEVNGHSLIRLSARTNEGVDVLRNHL 364 Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSL 416 K + + + +RHL L +L+ A L G +++AE LRLA +L Sbjct: 365 KQSMGFD-TSMEGGFLARRRHLQALEDAANHLQQGKAQLLGAWAG-ELLAEELRLAQQAL 422 Query: 417 GKITGCVDVEQLLDIIF 433 +ITG + LL IF Sbjct: 423 SEITGEFTSDDLLGRIF 439 >gi|221214581|ref|ZP_03587551.1| tRNA modification GTPase TrmE [Burkholderia multivorans CGD1] gi|221165471|gb|EED97947.1| tRNA modification GTPase TrmE [Burkholderia multivorans CGD1] Length = 464 Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 158/466 (33%), Positives = 250/466 (53%), Gaps = 35/466 (7%) Query: 4 EKETIFAVSTGALPSAISIIRLS-----GPSCFQVCEFICKKKKPFPRKASLRYFFGLDG 58 + + I A++T A I ++R+S + + + +C ++ PR AS F G Sbjct: 5 DSDPIVAIATAAGRGGIGVVRVSFGRGGEAAALPMIDALCGQRLA-PRHASYVPFLDAQG 63 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEFSR 115 LD+G+ + FP+P S+TGE E HGG V+ +L+ ++ + LRLA PGEF+R Sbjct: 64 VPLDRGIALYFPAPHSYTGEHVLELQGHGGPIVMQLLLQRCLDVGRAVGLRLAEPGEFTR 123 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF N K+DL +AE++ADLI + TE R + + G S +D + ++R +EA Sbjct: 124 RAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRQIHALVDDVINLRMLVEAT 183 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 LDF EEE + + + + ++ ++ + + G ++R G +V+ G N GKSSL Sbjct: 184 LDFPEEE-IDFLEAADARGKLAKIRAQLAHVLGDARQGALLREGLSVVLAGQPNVGKSSL 242 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 NALA ++AIVT I GTTRD + + +EG + I DTAG+RET+D VE+ GI RT+ E Sbjct: 243 LNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRETEDEVERIGIARTWSE 302 Query: 296 VENADLILLLKEINSKKEIS---------FPKNIDFIFIGTKSDL------YSTYTEEYD 340 +E AD++L L ++S+ ++ FP + + + K+DL + E D Sbjct: 303 IERADVVLHL--LDSRTGMTADDDAIAARFPAGVPVVRVLNKTDLTGVPASVAHPAAEGD 360 Query: 341 ----HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS-- 394 HL S+ G+G++ L ++ I + + + +RHL L +L A+ Sbjct: 361 LTEVHL-SAKRGDGIDLLRAELLRIAGWQAGAEGVYL-ARERHLIALRAAQDHLARAAEH 418 Query: 395 LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++ LD+ AE LRLA L ITG + LL +IFS+FCIGK Sbjct: 419 AEQRAQSLDLFAEELRLAQEQLNAITGEFTSDDLLGVIFSRFCIGK 464 >gi|78044593|ref|YP_358878.1| tRNA modification GTPase TrmE [Carboxydothermus hydrogenoformans Z-2901] gi|123577255|sp|Q3AG56|MNME_CARHZ RecName: Full=tRNA modification GTPase mnmE gi|77996708|gb|ABB15607.1| tRNA modification GTPase TrmE [Carboxydothermus hydrogenoformans Z-2901] Length = 461 Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 169/462 (36%), Positives = 258/462 (55%), Gaps = 29/462 (6%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFG-----LD 57 ++TI A+ST I I+R+SGP + + FI ++ K + S +G D Sbjct: 3 EDTIAAISTPLGEGGIGIVRVSGPGAIEAVKNVFIPRQSKDLSKVPSFTLHYGKIVDPAD 62 Query: 58 GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 G+I+D+ L+ V +P+S+TGED E + HGGI V +LE + K +RLA PGEF++RA Sbjct: 63 GKIVDEVLVSVMRAPKSYTGEDVVEINCHGGIVAVEKVLELILKQ-GIRLAEPGEFTKRA 121 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NG+IDL +AE++ D+I ++TE +L+ +SGEL K+ +I +FIE +D Sbjct: 122 FLNGRIDLSQAEAVIDIIRAKTEASLKLAGRQLSGELREKINAVRQKIINILAFIEVSID 181 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 + E E + + L +I + ND+ +S + G I+R G VI G N GKSSL N Sbjct: 182 YPEYE-FDEVTPETALKNIDEIINDVRRLLSSYERGRILREGITAVIAGKPNVGKSSLLN 240 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 AL +K AIVTDIPGTTRDV+ L+L+G VKI DTAGIRET+D+VEK G+++T + Sbjct: 241 ALLRKKRAIVTDIPGTTRDVIEDYLNLKGIPVKIVDTAGIRETEDLVEKLGVEKTREYLN 300 Query: 298 NADLIL---------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL 342 AD+ L +L IN K + ID + + Y+ T + + Sbjct: 301 QADVTLFVVDVSIGIDEDDEKILSLINKDKSLLVINKIDLLQGKVNFEQYAVKTGIKNFV 360 Query: 343 -ISSFTGEGLEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC 400 S+ EGLE L NK+ IL + + ++ S+ RH +L + + L +++ Sbjct: 361 PFSARNFEGLEILENKLYEILIPEQEGEGESALISNLRHKNYLEKALNSL-LSAKESIAS 419 Query: 401 G--LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G +D++A +L A LG ITG +++++ IFS+FC+GK Sbjct: 420 GEPVDLVAIDLNEALRELGAITGDALGDEIINEIFSQFCVGK 461 >gi|190171322|gb|ACE63731.1| ThdF [Cronobacter sakazakii] gi|190171326|gb|ACE63733.1| ThdF [Cronobacter sakazakii] Length = 439 Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 157/437 (35%), Positives = 242/437 (55%), Gaps = 31/437 (7%) Query: 20 ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGED 79 + I+R+SG V + + K P R A F DG LD+G+ + FP P SFTGED Sbjct: 11 VGILRVSGQQARNVAQAVLGKL-PKARYADYLPFKDADGTALDQGIALWFPGPNSFTGED 69 Query: 80 SAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET 139 E HGG +++ +L+ + +P +R+A PGEFS RAF N K+DL +AE++ADLI + + Sbjct: 70 VLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAEAIADLIDASS 129 Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LNDI 196 E R ++ + G S+ ++ LTH+R F+EA +DF +EE + S ++ LN++ Sbjct: 130 EQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEE-IDFLSDGKIEAQLNEV 188 Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 + D+ + ++ + G ++R G K+VI G NAGKSSL NALA ++ AIVTDI GTTRD Sbjct: 189 I---GDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRD 245 Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316 VL + ++G + I DTAG+RE D VE+ GI+R + E+E AD +L + + + + + Sbjct: 246 VLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVD-GTTTDATD 304 Query: 317 PKNI--DFI----------FIGTKSDLYSTY---TEEYDH---LISSFTGEGLEELINKI 358 P I DFI + K+D+ +E H +S+ T EG++ L N + Sbjct: 305 PAQIWPDFIARLPAKLPITVVRNKADVTGEQPGISEVNGHSLIRLSARTNEGVDVLRNHL 364 Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSL 416 K + + + +RHL L +L+ A L G +++AE LRLA +L Sbjct: 365 KQSMGFD-TSMEGGFLARRRHLQALEDAANHLQQGKAQLLGAWAG-ELLAEELRLAQQAL 422 Query: 417 GKITGCVDVEQLLDIIF 433 +ITG + LL IF Sbjct: 423 SEITGEFTSDDLLGRIF 439 >gi|190171334|gb|ACE63737.1| ThdF [Cronobacter sakazakii] Length = 440 Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 157/437 (35%), Positives = 242/437 (55%), Gaps = 31/437 (7%) Query: 20 ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGED 79 + I+R+SG V + + K P R A F DG LD+G+ + FP P SFTGED Sbjct: 12 VGILRVSGQQARDVAQAVLGKL-PKARYADYLPFKDADGTALDQGIALWFPGPNSFTGED 70 Query: 80 SAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET 139 E HGG +++ +L+ + +P +R+A PGEFS RAF N K+DL +AE++ADLI + + Sbjct: 71 VLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAEAIADLIDASS 130 Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LNDI 196 E R ++ + G S+ ++ LTH+R F+EA +DF +EE + S ++ LN++ Sbjct: 131 EQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEE-IDFLSDGKIEAQLNEV 189 Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 + D+ + ++ + G ++R G K+VI G NAGKSSL NALA ++ AIVTDI GTTRD Sbjct: 190 I---GDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRD 246 Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316 VL + ++G + I DTAG+RE D VE+ GI+R + E+E AD +L + + + + + Sbjct: 247 VLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVD-GTTTDATD 305 Query: 317 PKNI--DFI----------FIGTKSDLYSTY---TEEYDH---LISSFTGEGLEELINKI 358 P I DFI + K+D+ +E H +S+ T EG++ L N + Sbjct: 306 PAQIWPDFIARLPAKLPITVVRNKADVTGEQPGISEVNGHSLIRLSARTNEGVDVLRNHL 365 Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSL 416 K + + + +RHL L +L+ A L G +++AE LRLA +L Sbjct: 366 KQSMGFD-TSMEGGFLARRRHLQALEDAANHLQQGKAQLLGAWAG-ELLAEELRLAQQAL 423 Query: 417 GKITGCVDVEQLLDIIF 433 +ITG + LL IF Sbjct: 424 SEITGEFTSDDLLGRIF 440 >gi|317051763|ref|YP_004112879.1| tRNA modification GTPase TrmE [Desulfurispirillum indicum S5] gi|316946847|gb|ADU66323.1| tRNA modification GTPase TrmE [Desulfurispirillum indicum S5] Length = 458 Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 163/467 (34%), Positives = 258/467 (55%), Gaps = 43/467 (9%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL----DG 58 +ETI AV+T A+ I+R+SGP+ + + F + +P + +FGL G Sbjct: 4 QETITAVATAPGEGAVGIVRVSGPAAPTLFQQFFRSRNLQPVQQPKPRHLYFGLFLDEGG 63 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 LD+ L + P P SFTGED EFH HGG +++ ILE + RLA PGEFSRRAF Sbjct: 64 HPLDQVLAVHMPGPHSFTGEDVVEFHCHGGSTIISRILELCST--RCRLAQPGEFSRRAF 121 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NGK+DL +AE++ D+I S+T R++ + M G L + +L I+ +EA ++F Sbjct: 122 LNGKLDLTQAEAIIDVIRSKTPEAARIASDVMQGRLRDTLQELRGELIAIQGNLEATMEF 181 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 S+E D+ S+ + + ++ + + ++ + G ++R+G + I+G N GKSSL NA Sbjct: 182 SDE-DIAPASTTALAQRLTGVRQQLETLLAHSRTGMLMRDGAAVAIVGKPNVGKSSLLNA 240 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L++ + +IVT IPGTTRD++ + + G +++ DTAGIR++ D VE+ GI+RT ++ Sbjct: 241 LSRSERSIVTAIPGTTRDIVEQYISVHGLPIRLLDTAGIRQSQDAVEQIGIERTRSAIQQ 300 Query: 299 ADLILLLKEINSKK-----EIS-FPKNIDFIFIGTKSDLYSTYTEE----YDH---LISS 345 AD+IL L + + EI+ + + + KSDL E DH L +S Sbjct: 301 ADIILWLLDTSRPADEEDHEIARLVQGKPCLVLLNKSDLPRAMDESILHAMDHDTILTTS 360 Query: 346 F-TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE-MASLNE------ 397 TG+GLE+L++ + F+KL S H+ H L R E MA+ E Sbjct: 361 LQTGDGLEKLMDTL-------FRKL--SGAHHESHSNPLLSRARQRESMANALESLGHAQ 411 Query: 398 ----KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + G ++++ +++ A LG+I G V + +LD IFS+FCIGK Sbjct: 412 DTLIRGLGYELVSMDIQHAFSYLGEILGEVVTDDILDTIFSEFCIGK 458 >gi|190171272|gb|ACE63706.1| ThdF [Cronobacter malonaticus] gi|190171274|gb|ACE63707.1| ThdF [Cronobacter malonaticus] gi|190171278|gb|ACE63709.1| ThdF [Cronobacter malonaticus] gi|190171280|gb|ACE63710.1| ThdF [Cronobacter malonaticus] gi|190171282|gb|ACE63711.1| ThdF [Cronobacter malonaticus] gi|190171284|gb|ACE63712.1| ThdF [Cronobacter malonaticus] Length = 439 Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 157/437 (35%), Positives = 242/437 (55%), Gaps = 31/437 (7%) Query: 20 ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGED 79 + I+R+SG V + + K P R A F DG LD+G+ + FP P SFTGED Sbjct: 11 VGILRVSGQQARDVAQAVLGKL-PKARYADYLPFKDADGTALDQGIALWFPGPNSFTGED 69 Query: 80 SAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET 139 E HGG +++ +L+ + +P +R+A PGEFS RAF N K+DL +AE++ADLI + + Sbjct: 70 VLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAEAIADLIDASS 129 Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LNDI 196 E R ++ + G S+ ++ LTH+R F+EA +DF +EE + S ++ LN++ Sbjct: 130 EQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEE-IDFLSDGKIEAQLNEV 188 Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 + D+ + ++ + G ++R G K+VI G NAGKSSL NALA ++ AIVTDI GTTRD Sbjct: 189 I---GDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRD 245 Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316 VL + ++G + I DTAG+RE D VE+ GI+R + E+E AD +L + + + + + Sbjct: 246 VLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVD-GTTTDATD 304 Query: 317 PKNI--DFI----------FIGTKSDLYSTY---TEEYDH---LISSFTGEGLEELINKI 358 P I DFI + K+D+ +E H +S+ T EG++ L N + Sbjct: 305 PAQIWPDFIARLPAKLPITVVRNKADVTGEQPGLSEVNGHSLIRLSARTNEGVDVLRNHL 364 Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSL 416 K + + + +RHL L +L+ A L G +++AE LRLA +L Sbjct: 365 KQSMGFD-TSMEGGFLARRRHLQALEDAANHLQQGKAQLLGAWAG-ELLAEELRLAQQAL 422 Query: 417 GKITGCVDVEQLLDIIF 433 +ITG + LL IF Sbjct: 423 SEITGEFTSDDLLGRIF 439 >gi|190171270|gb|ACE63705.1| ThdF [Cronobacter genomosp. 1] gi|190171276|gb|ACE63708.1| ThdF [Cronobacter malonaticus] gi|190171298|gb|ACE63719.1| ThdF [Cronobacter sakazakii] gi|190171300|gb|ACE63720.1| ThdF [Cronobacter sakazakii] gi|190171302|gb|ACE63721.1| ThdF [Cronobacter sakazakii] gi|190171306|gb|ACE63723.1| ThdF [Cronobacter sakazakii] gi|190171308|gb|ACE63724.1| ThdF [Cronobacter sakazakii] gi|190171310|gb|ACE63725.1| ThdF [Cronobacter sakazakii] gi|190171320|gb|ACE63730.1| ThdF [Cronobacter sakazakii] gi|190171324|gb|ACE63732.1| ThdF [Cronobacter sakazakii] gi|190171330|gb|ACE63735.1| ThdF [Cronobacter sakazakii] gi|190171336|gb|ACE63738.1| ThdF [Cronobacter sakazakii] gi|190171338|gb|ACE63739.1| ThdF [Cronobacter sakazakii] gi|190171340|gb|ACE63740.1| ThdF [Cronobacter sakazakii] gi|190171342|gb|ACE63741.1| ThdF [Cronobacter sakazakii] Length = 439 Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 157/437 (35%), Positives = 242/437 (55%), Gaps = 31/437 (7%) Query: 20 ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGED 79 + I+R+SG V + + K P R A F DG LD+G+ + FP P SFTGED Sbjct: 11 VGILRVSGQQARDVAQAVLGKL-PKARYADYLPFKDADGTALDQGIALWFPGPNSFTGED 69 Query: 80 SAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET 139 E HGG +++ +L+ + +P +R+A PGEFS RAF N K+DL +AE++ADLI + + Sbjct: 70 VLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAEAIADLIDASS 129 Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LNDI 196 E R ++ + G S+ ++ LTH+R F+EA +DF +EE + S ++ LN++ Sbjct: 130 EQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEE-IDFLSDGKIEAQLNEV 188 Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 + D+ + ++ + G ++R G K+VI G NAGKSSL NALA ++ AIVTDI GTTRD Sbjct: 189 I---GDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRD 245 Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316 VL + ++G + I DTAG+RE D VE+ GI+R + E+E AD +L + + + + + Sbjct: 246 VLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVD-GTTTDATD 304 Query: 317 PKNI--DFI----------FIGTKSDLYSTY---TEEYDH---LISSFTGEGLEELINKI 358 P I DFI + K+D+ +E H +S+ T EG++ L N + Sbjct: 305 PAQIWPDFIARLPAKLPITVVRNKADVTGEQPGISEVNGHSLIRLSARTNEGVDVLRNHL 364 Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSL 416 K + + + +RHL L +L+ A L G +++AE LRLA +L Sbjct: 365 KQSMGFD-TSMEGGFLARRRHLQALEDAANHLQQGKAQLLGAWAG-ELLAEELRLAQQAL 422 Query: 417 GKITGCVDVEQLLDIIF 433 +ITG + LL IF Sbjct: 423 SEITGEFTSDDLLGRIF 439 >gi|93007296|ref|YP_581733.1| tRNA modification GTPase TrmE [Psychrobacter cryohalolentis K5] gi|92394974|gb|ABE76249.1| tRNA modification GTPase trmE [Psychrobacter cryohalolentis K5] Length = 487 Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 159/464 (34%), Positives = 250/464 (53%), Gaps = 34/464 (7%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66 TI A++T + +IRLSG + + + K PR AS F+ DG ++D+GL+ Sbjct: 28 TIAAIATPLGRGGVGVIRLSGTHAYSIACTLTGKSAFKPRMASFCRFYQADGTVIDEGLV 87 Query: 67 IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126 + F P SFTGED E HGG+ + N +L + ++ + A+ GEFS RAF+N K+DL+ Sbjct: 88 LYFKGPHSFTGEDVIELQGHGGMILQNQLLARVFEL-GAKQASAGEFSYRAFDNDKLDLV 146 Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186 +AE++AD I + + ++ +SGE S Q +++L H+R +EA +DF +EEDV Sbjct: 147 QAEAIADAIDATSAAAASSAIRSLSGEFSQKINQLLEQLIHLRLHVEAAIDFPDEEDVDF 206 Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246 S + + + I ++ K G+++R+G +V+ G NAGKSSL N LA ++ AI Sbjct: 207 LSDGVIQGKLEQTQEKIQQVLATAKQGQLLRDGIHVVLAGRPNAGKSSLLNRLAGQERAI 266 Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306 VTD+ GTTRD L + L G + ++DTAG+RET+D VE+ GI+R + AD++L++ Sbjct: 267 VTDVAGTTRDTLQETVVLNGLTLHLTDTAGLRETEDTVERIGIERARTAIAQADMLLMVY 326 Query: 307 EINSKKE-------------ISFPKNIDFIFIGTKSDLYST--------------YTEEY 339 ++ E P+ + I KSDL + + Y Sbjct: 327 DVTRDLEEESTPLQLAEQLFGELPEAKRLLIIANKSDLLNNNSSKEITSISQQEIHNRGY 386 Query: 340 DHL-ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLN 396 + + +S TG G+++L+ + + + F S+ + RHL L +T YL A L Sbjct: 387 EQVNVSCETGAGIDDLVETLCAKVG--FHPPENSLIARTRHLDALRRTAEYLAEAHEQLT 444 Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G +++AE+LR A SLG+ITG + LL IF FCIGK Sbjct: 445 VFKAG-ELVAESLRQAQHSLGEITGEFSADDLLGKIFGSFCIGK 487 >gi|237749241|ref|ZP_04579721.1| tRNA modification GTPase mnmE [Oxalobacter formigenes OXCC13] gi|229380603|gb|EEO30694.1| tRNA modification GTPase mnmE [Oxalobacter formigenes OXCC13] Length = 462 Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 165/465 (35%), Positives = 250/465 (53%), Gaps = 28/465 (6%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK---PF-PRKASLRYFFGL 56 M + I A++T + I+R+SG + + + K P PR A F Sbjct: 1 MKTDSSPIVAIATPPGRGGVGIVRVSGKNLDPLINELFKDTMADLPLTPRYAHFLPFLDA 60 Query: 57 DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEEL---AKMPNLRLANPGEF 113 D I+D+GL I F +P SFTGED E HGG V+ +L+ + +LR+A PGEF Sbjct: 61 DKSIIDEGLAIYFKAPNSFTGEDVLELQGHGGTTVLQMVLKRCLLAGEKIDLRMAEPGEF 120 Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173 +RRAF N +IDL +AE++ADLI + TE R + +SG S + + + +R +E Sbjct: 121 TRRAFLNDRIDLAQAEAIADLIDATTEEAVRSASRSLSGVFSKEIHELVANIIQLRMMVE 180 Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233 + LDF EE D+ + V I ++ +S+ I+Q G ++R G +V+ G +N GKS Sbjct: 181 SSLDFPEE-DIDFLKKENVEGQIANIQEALSAIIAQSAQGALLREGIHVVLAGQTNVGKS 239 Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--ETDDIVEKEGIKR 291 SL N LA +VAIVT I GTTRD +T + +EG V + DTAGIR +D VE+ GI+R Sbjct: 240 SLLNTLAGSNVAIVTPIAGTTRDKITETIQIEGVPVTLIDTAGIRANSAEDEVERIGIER 299 Query: 292 TFLEVENADLILLL-------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL-- 342 T+ E+ AD+IL L + K FP+NI I I K D+ S + D + Sbjct: 300 TWTEIGKADVILHLLDASLGPTRADEKIAADFPENIPVIQIWNKIDI-SGHRPSVDSMFG 358 Query: 343 -----ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--L 395 +S+ T +G++ L +++ I + + + + +RHL + ++L +AS Sbjct: 359 ITQVYLSTQTEQGIDLLRDELLKI-AGWTQTGESTYLARERHLTAMKVAEQHLAIASEHA 417 Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + +D++AE LRLA +L ITG + LL +IFS+FCIGK Sbjct: 418 TAANPSIDLLAEELRLAQDALNSITGEFTSDDLLGLIFSRFCIGK 462 >gi|289677543|ref|ZP_06498433.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. syringae FF5] Length = 446 Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 160/451 (35%), Positives = 240/451 (53%), Gaps = 26/451 (5%) Query: 11 VSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFP 70 ++T + I+RLSGP + E I + PR A F G++LD+G+ + FP Sbjct: 1 IATAQGRGGVGIVRLSGPLAGKAAEAIIGRTLK-PRFAHYGPFVDDAGQVLDEGIALYFP 59 Query: 71 SPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAES 130 P SFTGED E HGG V++ +L+ ++ + RLA PGEFS RAF N K+DL +AE+ Sbjct: 60 GPNSFTGEDVLELQGHGGPIVLDMLLQRCLQLGS-RLARPGEFSERAFLNDKLDLAQAEA 118 Query: 131 LADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSK 190 +ADLI + + R ++ + G S +KL +R ++EA +DF EEE + + Sbjct: 119 IADLIEASSAQAARNALRSLQGAFSRRVDNLTEKLISLRIYVEAAIDFPEEE-IDFLADG 177 Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250 VL + ++ ++S+ + + G ++R+G +VI G NAGKSSL NALA ++ AIVT+I Sbjct: 178 HVLKMLDDVRAELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALAGREAAIVTEI 237 Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310 GTTRDVL + ++G + + DTAG+R+T D VE G++R + AD ILL+ + + Sbjct: 238 AGTTRDVLREHIHIDGMPLHVVDTAGLRDTQDQVEMIGVQRALKAIGEADRILLVVDATA 297 Query: 311 KKEI-----------SFPKNIDFIFIGTKSDLYST----YTEEYDHLISSFT----GEGL 351 + P I K+DL T H+ S + GEGL Sbjct: 298 PEAADPFALWPEFLEQRPDPSKVTLIRNKADLSGDPVDLQTSVDGHVTISLSARSGGEGL 357 Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDIIAENL 409 E L +K+ + + + S + +RHL L LE A L G +++AE+L Sbjct: 358 ELLREHLKACMGYE-QTSESSFSARRRHLEALRHASDSLEHGRAQLTLAGAG-ELLAEDL 415 Query: 410 RLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 R A +LG+ITG + LL IFS FCIGK Sbjct: 416 RQAQQALGEITGAFSSDDLLGRIFSSFCIGK 446 >gi|261190881|ref|XP_002621849.1| mitochondrial GTPase [Ajellomyces dermatitidis SLH14081] gi|239590893|gb|EEQ73474.1| mitochondrial GTPase [Ajellomyces dermatitidis SLH14081] Length = 609 Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 178/553 (32%), Positives = 273/553 (49%), Gaps = 114/553 (20%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLD-- 57 ++ TI+A+ST +AI+I+R+SGP+C Q+ +C K P PR A+LR F Sbjct: 58 LDEPSPTIYALSTAPGRAAIAIVRISGPACVQIYNALCPKSPLPEPRVAALRTLFDPSVP 117 Query: 58 ---GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP----------- 103 ILD+ +++ FP+P++ TGED E H+HGG AVV +L + + Sbjct: 118 LSVNSILDRAVVLHFPAPKTVTGEDVLELHIHGGPAVVKAVLNAIPRCAESASSDKFAPS 177 Query: 104 NLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWID 163 ++R A PGEF+RRAF N ++ L + E+L + +S+ETE QRRL++ G + L+ Y +W Sbjct: 178 SIRYAEPGEFTRRAFLNDRLSLPQIEALGNTLSAETEHQRRLAIRGTNDSLAVRYERWRQ 237 Query: 164 KLTHIRSFIEADLDFSEE----EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG 219 +L + R +EA +DFSE+ E + F S + + L I+ HI GE++RNG Sbjct: 238 QLLYTRGEMEALIDFSEDQHFDESTEEFVSS-ITGETRNLVRQINMHIENASKGELLRNG 296 Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 K+ +LG NAGKSSL N + ++ AIV+ GTTRD++ + +DL GY K D AG+R Sbjct: 297 IKVALLGAPNAGKSSLLNRIVGREAAIVSSEEGTTRDIVDVGVDLGGYFCKFGDMAGLRS 356 Query: 280 TD---------DIVEKEGIKRTFLEVENADLILL---LKEINSKKEISF---PKNID--- 321 VE+EGI+R +D++++ L+E +S + + P+ ID Sbjct: 357 GHIAQAGQMPIGAVEQEGIRRAKARALESDVVIVVLSLEEGDSGRGVKLVLEPEVIDAVQ 416 Query: 322 --------FIFIGTKSDLYSTYTE---EYDHLISSFTGE--------------------- 349 I K D Y+ T L++S GE Sbjct: 417 SCIALEKHMIVAVNKFDKYTPATNTDGTAQGLVNSLAGEITSLVPHIVQDQIFLISCREA 476 Query: 350 ---------------GLEELINKIKSILS--------NKFKKLPFSIP---SHK------ 377 L+ELI K + + +KF KL + +H+ Sbjct: 477 ENEQSETADPGNIQTLLKELIRTFKRMSTPSELENGNDKFDKLYWEDSLGVTHRQSSNLQ 536 Query: 378 ---RHLYH-LSQTVRYLEMASLNEK-DCGLDII--AENLRLASVSLGKITG---CVDVEQ 427 +HL LSQT + + A E+ + +DI+ AE+LR A+ L KITG DVE Sbjct: 537 KCVQHLNDFLSQTCQTPDNAGNAEQIELNIDIVTAAEHLRFAADCLAKITGRGESGDVED 596 Query: 428 LLDIIFSKFCIGK 440 +L ++F KFC+GK Sbjct: 597 VLGVVFEKFCVGK 609 >gi|190171258|gb|ACE63699.1| ThdF [Cronobacter dublinensis] Length = 439 Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 157/437 (35%), Positives = 242/437 (55%), Gaps = 31/437 (7%) Query: 20 ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGED 79 + I+R+SG V + + K P R A F DG LD+G+ + FP P SFTGED Sbjct: 11 VGILRVSGQQARDVAQAVLGKL-PKARYADYLPFKDADGTALDQGIALWFPGPNSFTGED 69 Query: 80 SAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET 139 E HGG +++ +L+ + +P +R+A PGEFS RAF N K+DL +AE++ADLI + + Sbjct: 70 VLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAEAIADLIDASS 129 Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LNDI 196 E R ++ + G S+ ++ LTH+R F+EA +DF +EE + S ++ LN++ Sbjct: 130 EQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEE-IDFLSDGKIEAQLNEV 188 Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 + D+ + ++ + G ++R G K+VI G NAGKSSL NALA ++ AIVTDI GTTRD Sbjct: 189 I---GDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRD 245 Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316 VL + ++G + I DTAG+RE D VE+ GI+R + E+E AD +L + + + + + Sbjct: 246 VLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVD-GTTTDATD 304 Query: 317 PKNI--DFI----------FIGTKSDLYSTY---TEEYDH---LISSFTGEGLEELINKI 358 P I DFI + K+D+ +E H +S+ T EG++ L N + Sbjct: 305 PAQIWPDFIARLPAKLPITVVRNKADVTGEQPGISEVNGHSLIRLSARTNEGVDVLRNHL 364 Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSL 416 K + + + +RHL L +L+ A L G +++AE LRLA +L Sbjct: 365 KQSMGFD-TSMEGGFLARRRHLQALETAANHLQQGKAQLLGAWAG-ELLAEELRLAQQAL 422 Query: 417 GKITGCVDVEQLLDIIF 433 +ITG + LL IF Sbjct: 423 SEITGEFTSDDLLGRIF 439 >gi|84514918|ref|ZP_01002281.1| tRNA modification GTPase [Loktanella vestfoldensis SKA53] gi|84511077|gb|EAQ07531.1| tRNA modification GTPase [Loktanella vestfoldensis SKA53] Length = 393 Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 148/402 (36%), Positives = 229/402 (56%), Gaps = 17/402 (4%) Query: 44 FPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP 103 P LR G ++D+ L++ F +SFTGED E H+HG AVV+ +L L P Sbjct: 4 VPVARGLRALRDRAGDLVDEALVLRFADGKSFTGEDVVELHLHGSPAVVSAVLRILGDDP 63 Query: 104 NLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWID 163 +R A GEF+RRA NG++DL + E LADLI +ETE QRR ++ SG L + W Sbjct: 64 AMRPAEAGEFTRRALTNGRLDLAQVEGLADLIDAETESQRRQAVRVFSGALGEIADSWRK 123 Query: 164 KLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL-FLKNDISSHISQGKLGEIIRNGYKI 222 +L + +EA +DF +E+ + D+L ++++++ + ++ E +R+G+++ Sbjct: 124 RLIRAAALLEATIDFVDED--VPVDVVPEVRDLLQAVRSEMAREAAGVRMAERLRDGFEV 181 Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282 I+G N GKS+L N LA++DVAI ++I GTTRDV+ + LDL+G V + DTAG+R+TDD Sbjct: 182 AIVGAPNVGKSTLMNRLARRDVAITSEIAGTTRDVIEVRLDLDGIPVTLLDTAGLRDTDD 241 Query: 283 IVEKEGIKRTFLEVENADLI--LLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD 340 +VE G+ R E AD+ +LL +++ I++ K+D + Sbjct: 242 LVESLGVARARARAEQADMRVHMLLDAPVPSHDLAAGD----IYVRAKADTGAGGG---- 293 Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LNEK 398 +S +G G+E LI I L + + ++ +RH L + V L+ A L+ + Sbjct: 294 LAVSGLSGMGVEALIALISGELGRRVASVGLAM--RERHRVALLRAVTSLDDAGAWLDAE 351 Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D LD+IAE+LR A ++ + G VDVEQ+LD IFS FCIGK Sbjct: 352 DGMLDLIAEDLRTAIRAVDSLVGRVDVEQVLDEIFSSFCIGK 393 >gi|167587873|ref|ZP_02380261.1| tRNA modification GTPase TrmE [Burkholderia ubonensis Bu] Length = 464 Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 153/463 (33%), Positives = 243/463 (52%), Gaps = 29/463 (6%) Query: 4 EKETIFAVSTGALPSAISIIRLS-----GPSCFQVCEFICKKKKPFPRKASLRYFFGLDG 58 + + I A++T A I ++R+S + + + +C ++ PR AS F G Sbjct: 5 DSDPIVAIATAAGRGGIGVVRVSFGRRGEAAALPLIDALCGQRLA-PRHASYVPFLDEHG 63 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEFSR 115 LD+G+ + FP+P S+TGE E HGG V+ +L+ + + LRLA PGEF+R Sbjct: 64 APLDRGIALYFPAPHSYTGEHVLELQGHGGPIVMQLLLQRCLDAGRSAGLRLAEPGEFTR 123 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF N K+DL +AE++ADLI + TE R + + G S +D + +R +EA Sbjct: 124 RAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRQIHTLVDDVITLRMLVEAT 183 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 LDF EEE + + + + ++ ++ + + G ++R G +V+ G N GKSSL Sbjct: 184 LDFPEEE-IDFLEAADARGKLARIREQLAHVLGDARQGALLREGLSVVLAGQPNVGKSSL 242 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 NALA ++AIVT I GTTRD + + +EG + I DTAG+RET+D VE+ GI RT+ E Sbjct: 243 LNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRETEDEVERIGIARTWSE 302 Query: 296 VENADLILLLKEINSKK-------EISFPKNIDFIFIGTKSDLY---------STYTEEY 339 +E AD++L L + FP + + + K+DL + + Sbjct: 303 IERADVVLHLLDARGGMTADDEAIAARFPAGVPVVRVLNKTDLTGAPASVAHPAAQGDLT 362 Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LNE 397 + +S+ G+G++ L ++ I + + + +RHL L +L +A+ + Sbjct: 363 EVRLSAKRGDGIDLLRGELLRIAGWQAGAEGVYL-ARERHLVALRAAQEHLALAADHAEQ 421 Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + LD+ AE LRLA L ITG + LL +IFS+FCIGK Sbjct: 422 RAQSLDLFAEELRLAQEQLNSITGEFTSDDLLGVIFSRFCIGK 464 >gi|332995875|gb|AEF05930.1| tRNA modification GTPase [Alteromonas sp. SN2] Length = 462 Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 160/459 (34%), Positives = 245/459 (53%), Gaps = 29/459 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + I+R+SGP + E + PR A+ F ++D+G+ Sbjct: 9 DTITAQATAPGRGGVGIVRVSGPYAKAIAEVLVPTALT-PRLATYTPFVDSQQNVIDQGI 67 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + F P SFTGED E HGG V++ +++ + RLANPGEFS +AF N K+DL Sbjct: 68 ALFFKGPNSFTGEDVLELQGHGGQVVMDMLIDAVLSTGKARLANPGEFSEQAFINDKLDL 127 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + ++ R ++ + GE S+ D++ H+R ++EA +DF EEE + Sbjct: 128 AQAEAIADLIDASSKQAARSALRSLQGEFSTQIQTLSDQIVHLRMYVEAAIDFPEEE-ID 186 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S +V D+ + + Q K G ++R G ++VI G NAGKSSL NALA +D A Sbjct: 187 FLSDGKVSGDLAAILAHLQVVREQAKQGSLLREGMQVVIAGRPNAGKSSLLNALAGRDSA 246 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVT+I GTTRDVL + + G V I DTAG+R++ D VEK GI+R + + AD +L + Sbjct: 247 IVTEIAGTTRDVLKEHIHINGMPVHIIDTAGLRDSPDKVEKIGIERAWQAISEADHVLFV 306 Query: 306 KEINSKKEIS------------FPKNIDFIFIGTKSDLY-------STYTEEYDHL---I 343 + ++ +I+ P+ I I K+DL TE D I Sbjct: 307 TD-STTTDIADPYKIWPEFMARLPEGIPTTVIKNKADLSDLQVGLNQVKTEHGDMPVINI 365 Query: 344 SSFTGEGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-G 401 S+ +G++ L + + K++ + + F + +RHL L + Y+ + D Sbjct: 366 SAKQSDGIDTLRDHLAKTMGFDTTTEGQFI--ARRRHLDALEKAYEYVVIGEQQLHDAMA 423 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LRLA SL +ITG + LL IFS FCIGK Sbjct: 424 GELLAEELRLAHQSLCEITGEFTSDDLLGKIFSSFCIGK 462 >gi|188993859|ref|YP_001905869.1| tRNA modification GTPase TrmE [Xanthomonas campestris pv. campestris str. B100] gi|205829191|sp|B0RMM4|MNME_XANCB RecName: Full=tRNA modification GTPase mnmE gi|167735619|emb|CAP53837.1| tRNA modification GTPase TrmE [Xanthomonas campestris pv. campestris] Length = 446 Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 152/449 (33%), Positives = 241/449 (53%), Gaps = 12/449 (2%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 MN TI A++T A I I+RLSGP Q+ + R A F G + Sbjct: 1 MNASPSTIVAIATAAGTGGIGIVRLSGPQSVQIAAALGIAGLQ-SRHARYARFRDAQGEV 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D G+ + FP+P SFTGE+ E HG ++ ++ + R A GEFS RAF N Sbjct: 60 IDDGIAVWFPAPHSFTGEEVVELQGHGSPVLLRQLVARCIAL-GARQARAGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GK+DL +AE++ADLI++ R + + G S + LT +R +EA +DF++ Sbjct: 119 GKLDLAQAEAIADLIAAGDLRAARAARRSLDGVFSRRVDAVSESLTRLRIHVEAAIDFAD 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E + +V ++ + ++ + + G +R+G V++G NAGKSSL NALA Sbjct: 179 EP-LDTLGGAQVREELTRTRALLAQLLRDAERGRKLRDGLHAVLIGPPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 D AIVTD+ GTTRD L + L+G+ + + DTAG+RE D +E+EG++R E++ AD Sbjct: 238 GSDRAIVTDVAGTTRDTLHEAIQLDGFELTLVDTAGLREGGDAIEREGMRRARAELQRAD 297 Query: 301 LILLLKEINSKKEI--SFPKNIDFI----FIGTKSDLYSTYTE-EYDHL-ISSFTGEGLE 352 L L++ + + + ID + +I K DL + + D + +S+ TG+GLE Sbjct: 298 LALIVLDARDPQAARDALGDAIDAVPRRLWIHNKCDLLAVAGPMDADAIAVSAVTGQGLE 357 Query: 353 ELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411 L +++ + L + + + + RH+ L + ++ + A L + L++ AE LRL Sbjct: 358 HLHTRLRELALGDGIESVDGEFSARTRHVDALHRAEQHADAADLELRYEQLELAAEELRL 417 Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A +LG+ITG + + LL IFS FCIGK Sbjct: 418 AHEALGEITGKLSADDLLGKIFSSFCIGK 446 >gi|226294718|gb|EEH50138.1| tRNA modification GTPase GTPBP3 [Paracoccidioides brasiliensis Pb18] Length = 667 Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 165/503 (32%), Positives = 260/503 (51%), Gaps = 69/503 (13%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGL-----DGRI 60 TI+A+ST +AI+IIR+SGP C Q+ + +C K P PR ASL + I Sbjct: 165 TIYALSTAPGRAAIAIIRVSGPGCVQIYKALCPKSPLPTPRVASLHTLYDPLLPPSINTI 224 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP-----------NLRLAN 109 LD+ +++ FP+P++ TGED E HVHGG AVV +L + + ++R A Sbjct: 225 LDRAMVLYFPAPKTVTGEDLLELHVHGGPAVVKAVLNAIPRCTKVDFTGSNFPLSIRYAE 284 Query: 110 PGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR 169 PGEF+RRAF N ++ L + E+L + +S+ETE QRRL++ G S L++ Y +W +L + R Sbjct: 285 PGEFTRRAFLNDRLSLPQIEALGNTLSAETEQQRRLAVRGTSDALATRYERWHQQLLYAR 344 Query: 170 SFIEADLDFSEEEDVQNFSSKEVL---NDILFLKNDISSHISQGKLGEIIRNGYKIVILG 226 +EA +DFSE++ + + VL ++I L I+ H+ GE++RNG K+ +LG Sbjct: 345 GEMEALIDFSEDQHFDESAEEFVLSVTDEIRNLVRQINLHVENASKGELLRNGIKVALLG 404 Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD---- 282 NAGKSSL N + ++ AIV+ GTTRD++ + +D+ G+ K D AG+R Sbjct: 405 APNAGKSSLLNRIVGREAAIVSSEEGTTRDIVDVGVDIGGFFCKFGDMAGLRPDHSAQAG 464 Query: 283 ------IVEKEGIKRTFLEVENADLILL---LKEINSKKEISF---PKNIDFI--FIGTK 328 VEKEGI+R +D++++ ++E + E P+ +D + + Sbjct: 465 QMPPIGAVEKEGIRRAKARALESDVVIVVLSVEECDGGTEAKLVLEPEVVDAVRSCLTLG 524 Query: 329 SDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL------------------- 369 ++ + S T EE ++ + +KF + Sbjct: 525 KNVIVAVNKADKCTTSMITAGTREEFFGRLAREIRSKFPHVAEDQIILISCREAENEQSE 584 Query: 370 ---PFSIPSHKRHLY---HLSQTVRYLEMASLNEK-DCGLDII--AENLRLASVSLGKIT 420 P +I L+ LSQT + E A E+ + +DI+ AE+LR A+ L KIT Sbjct: 585 TPDPGNIQILLGGLHLNDFLSQTEQTPENAENAEQIELNIDIVTAAEHLRFAADCLAKIT 644 Query: 421 G---CVDVEQLLDIIFSKFCIGK 440 G DVE +L ++F KFC+GK Sbjct: 645 GRGESGDVEDVLGVVFEKFCVGK 667 >gi|90194070|gb|ABD92596.1| ThdF [Gallibacterium anatis] Length = 436 Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 157/444 (35%), Positives = 249/444 (56%), Gaps = 43/444 (9%) Query: 19 AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGE 78 + I+R+SGP QV + + K PR A+ F +DG +LD+G+ + F +P SFTGE Sbjct: 7 GVGILRVSGPLSEQVAKEVLGKTLK-PRFANYLPFKDIDGSVLDQGIALFFKAPNSFTGE 65 Query: 79 DSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSE 138 D E HGG +++ +L+ + ++ +RLA PGEFS +AF N KIDL +AE++ADLI + Sbjct: 66 DVLELQGHGGQVILDLLLKRILQIKGIRLARPGEFSEQAFLNDKIDLAQAEAIADLIDAS 125 Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LND 195 +E R +++ + GE S+ Q +D+L ++R+++EA +DF +EE + + ++ LN Sbjct: 126 SEQAARSALKSLQGEFSTKVHQLVDELIYLRTYVEAAIDFPDEE-IDFLADGKIEAHLNQ 184 Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255 I+ ++ SQ K G ++R G K+VI G NAGKSSL NAL+ +D AIVTD+ GTTR Sbjct: 185 IIAKVAEVQ---SQAKQGSLLREGMKVVIAGRPNAGKSSLLNALSGRDAAIVTDVAGTTR 241 Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI- 314 DVL + L+G + I DTAG+R D VE+ GI+R + E++ AD +L + + + E Sbjct: 242 DVLREHIHLDGMPLHIIDTAGLRTATDEVERIGIERAWQEIDQADRVLFMLDSTTTDETL 301 Query: 315 ----------SFPKNIDFIFIGTKSDL------------YSTYTEEYDHLISSFTGEGLE 352 P +I I K+D+ Y+T T +S+ T +G++ Sbjct: 302 PEKIWPEFMSRLPPSIPVTIIRNKADISSETEGIRTENGYTTIT------LSAKTQQGIQ 355 Query: 353 ELINKIK-SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENL 409 L +K SI + F + +RHL L Q ++L+ L + G +++AE L Sbjct: 356 LLKAHLKESIGYQTVTEGGFL--ARRRHLEALEQAAQHLQQGHIQLTQFYAG-ELLAEEL 412 Query: 410 RLASVSLGKITGCVDVEQLLDIIF 433 ++A +L +ITG + LL IF Sbjct: 413 KMAQNALSEITGQFTSDDLLGNIF 436 >gi|221201821|ref|ZP_03574858.1| tRNA modification GTPase TrmE [Burkholderia multivorans CGD2M] gi|221207673|ref|ZP_03580681.1| tRNA modification GTPase TrmE [Burkholderia multivorans CGD2] gi|221172519|gb|EEE04958.1| tRNA modification GTPase TrmE [Burkholderia multivorans CGD2] gi|221178241|gb|EEE10651.1| tRNA modification GTPase TrmE [Burkholderia multivorans CGD2M] Length = 464 Score = 240 bits (613), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 158/466 (33%), Positives = 249/466 (53%), Gaps = 35/466 (7%) Query: 4 EKETIFAVSTGALPSAISIIRLS-----GPSCFQVCEFICKKKKPFPRKASLRYFFGLDG 58 + + I A++T A I ++R+S + + + +C ++ PR AS F G Sbjct: 5 DSDPIVAIATAAGRGGIGVVRVSFGRGGEAAALPMIDALCGQRLA-PRHASYVPFLDAQG 63 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEFSR 115 LD+G+ + FP+P S+TGE E HGG V+ +L+ ++ + LRLA PGEF+R Sbjct: 64 VPLDRGIALYFPAPHSYTGEHVLELQGHGGPIVMQLLLQRCLDVGRAVGLRLAEPGEFTR 123 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF N K+DL +AE++ADLI + TE R + + G S +D + +R +EA Sbjct: 124 RAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRQIHALVDDVIDLRMLVEAT 183 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 LDF EEE + + + + ++ ++ + + G ++R G +V+ G N GKSSL Sbjct: 184 LDFPEEE-IDFLEAADARGKLAKIRAQLAHVLGDARQGALLREGLSVVLAGQPNVGKSSL 242 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 NALA ++AIVT I GTTRD + + +EG + I DTAG+RET+D VE+ GI RT+ E Sbjct: 243 LNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRETEDEVERIGIARTWSE 302 Query: 296 VENADLILLLKEINSKKEIS---------FPKNIDFIFIGTKSDL------YSTYTEEYD 340 +E AD++L L ++S+ ++ FP + + + K+DL + E D Sbjct: 303 IERADVVLHL--LDSRTGMTADDDAIAARFPAGVPVVRVLNKTDLTGVPASVAHPAAEGD 360 Query: 341 ----HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS-- 394 HL S+ G+G++ L ++ I + + + +RHL L +L A+ Sbjct: 361 LTEVHL-SAKRGDGIDLLRAELLRIAGWQAGAEGVYL-ARERHLIALRAAQDHLARAAEH 418 Query: 395 LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++ LD+ AE LRLA L ITG + LL +IFS+FCIGK Sbjct: 419 AEQRAQSLDLFAEELRLAQEQLNAITGEFTSDDLLGVIFSRFCIGK 464 >gi|205422352|sp|Q1Q7V4|MNME_PSYCK RecName: Full=tRNA modification GTPase mnmE Length = 478 Score = 240 bits (613), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 159/464 (34%), Positives = 250/464 (53%), Gaps = 34/464 (7%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66 TI A++T + +IRLSG + + + K PR AS F+ DG ++D+GL+ Sbjct: 19 TIAAIATPLGRGGVGVIRLSGTHAYSIACTLTGKSAFKPRMASFCRFYQADGTVIDEGLV 78 Query: 67 IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126 + F P SFTGED E HGG+ + N +L + ++ + A+ GEFS RAF+N K+DL+ Sbjct: 79 LYFKGPHSFTGEDVIELQGHGGMILQNQLLARVFEL-GAKQASAGEFSYRAFDNDKLDLV 137 Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186 +AE++AD I + + ++ +SGE S Q +++L H+R +EA +DF +EEDV Sbjct: 138 QAEAIADAIDATSAAAASSAIRSLSGEFSQKINQLLEQLIHLRLHVEAAIDFPDEEDVDF 197 Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246 S + + + I ++ K G+++R+G +V+ G NAGKSSL N LA ++ AI Sbjct: 198 LSDGVIQGKLEQTQEKIQQVLATAKQGQLLRDGIHVVLAGRPNAGKSSLLNRLAGQERAI 257 Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306 VTD+ GTTRD L + L G + ++DTAG+RET+D VE+ GI+R + AD++L++ Sbjct: 258 VTDVAGTTRDTLQETVVLNGLTLHLTDTAGLRETEDTVERIGIERARTAIAQADMLLMVY 317 Query: 307 EINSKKE-------------ISFPKNIDFIFIGTKSDLYST--------------YTEEY 339 ++ E P+ + I KSDL + + Y Sbjct: 318 DVTRDLEEESTPLQLAEQLFGELPEAKRLLIIANKSDLLNNNSSKEITSISQQEIHNRGY 377 Query: 340 DHL-ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLN 396 + + +S TG G+++L+ + + + F S+ + RHL L +T YL A L Sbjct: 378 EQVNVSCETGAGIDDLVETLCAKVG--FHPPENSLIARTRHLDALRRTAEYLAEAHEQLT 435 Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G +++AE+LR A SLG+ITG + LL IF FCIGK Sbjct: 436 VFKAG-ELVAESLRQAQHSLGEITGEFSADDLLGKIFGSFCIGK 478 >gi|194016355|ref|ZP_03054969.1| tRNA modification GTPase TrmE [Bacillus pumilus ATCC 7061] gi|194011828|gb|EDW21396.1| tRNA modification GTPase TrmE [Bacillus pumilus ATCC 7061] Length = 459 Score = 240 bits (613), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 163/461 (35%), Positives = 260/461 (56%), Gaps = 29/461 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK--KKKPFPRKASLRYFFG--LDGR-- 59 +TI A+ST AI+IIRLSGP Q+ + + K K+K S +G +D R Sbjct: 2 DTIAAISTPMGEGAIAIIRLSGPEAVQIADRMYKGPKEKKLVSVDSHTIHYGHIVDARTD 61 Query: 60 -ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 ++++ ++ V +P++FT ED E + HGGI VN +L+ LA RLA PGEF++RAF Sbjct: 62 QVIEEVMVSVLRAPKTFTREDVIEINCHGGIVTVNKVLQ-LALREGARLAEPGEFTKRAF 120 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG+IDL +AE++ DLI ++T+ +++ M G LS L + ++ + IE ++D+ Sbjct: 121 LNGRIDLSQAEAVMDLIRAKTDRAMNVAITQMEGRLSGLVQRLRGEILETLAHIEVNIDY 180 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E +DV+ + + ++ +K +I S +S + G+I+R G VI+G N GKSSL N+ Sbjct: 181 PEYDDVEEMTHRVLVEKATSVKKEIESLLSTSQQGKILREGLSTVIIGRPNVGKSSLLNS 240 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L ++ AIVTDIPGTTRDV+ +++ G +++ DTAGIRET+DIVE+ G++R+ ++ Sbjct: 241 LVQETKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDIVERIGVERSRQVLKE 300 Query: 299 ADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTY-TEEYDHL------- 342 ADLILL+ +N +E+S +D I I K+DL E+ L Sbjct: 301 ADLILLV--LNYSEELSEEDIKLFEAVSGMDIIVIVNKTDLEPKLDVEKVKQLAKDRPVV 358 Query: 343 -ISSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKD 399 S +G++EL I+S+ + + + S+ RH+ L + +E A D Sbjct: 359 TTSLLQEKGIDELEMAIQSLFFTGSIESGDLTYVSNTRHIALLQAAKQSIEDALEGIAMD 418 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +DI+ +L LG+I G E L+D +FS+FC+GK Sbjct: 419 VPIDIVQIDLTRCWEQLGEIIGDAVHESLIDQLFSQFCLGK 459 >gi|194291282|ref|YP_002007189.1| tRNA modification gtpase trme [Cupriavidus taiwanensis LMG 19424] gi|193225117|emb|CAQ71128.1| GTPase involved in tRNA modification and in thiophene and furan oxidation [Cupriavidus taiwanensis LMG 19424] Length = 475 Score = 240 bits (613), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 162/478 (33%), Positives = 247/478 (51%), Gaps = 41/478 (8%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M + I A++T I ++R+SGP V +C + PR A+ F +G++ Sbjct: 1 MTAPQLPIAAIATAPGRGGIGVVRVSGPDVGPVMRAVCGQALK-PRHATYLPFLDGNGKV 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN---LRLANPGEFSRRA 117 +D GL + FP+P S+TGE+ E HGG V+ +L + + LRLA PGEF+RRA Sbjct: 60 IDHGLALYFPAPNSYTGEEVLELQGHGGPVVMQMLLTRCLQAGDGIGLRLAEPGEFTRRA 119 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F N K+DL +AE++ADLI + TE R + M GE S+ Q +DK+ H+R +EA LD Sbjct: 120 FLNDKLDLAQAEAVADLIEASTEAAARSAARSMEGEFSNAIRQLVDKVIHLRMLVEATLD 179 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 F EEE + + + +++++ + ++Q + G ++R G +V+ G N GKSSL N Sbjct: 180 FPEEE-IDFLEQSDARGQLATIRDELGAVLAQARQGALLREGLSVVLAGQPNVGKSSLLN 238 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEV 296 ALA ++AIVT I GTTRD + + ++G + I DTAG+R E D VE+ GI+RT+ + Sbjct: 239 ALAGAELAIVTPIAGTTRDRVRETIQIDGIPLHIIDTAGLREEAADEVERIGIERTWDAI 298 Query: 297 ENADLILLLKE---------------INSKKEISFPKNIDFIFIGTKSDLYSTYTE---- 337 AD++L L + I+ K P + I K D E Sbjct: 299 RRADIVLHLVDATDYLRHGLSEIDDAIDDKLSGQLPPGAPIVRIVNKIDKAPAVGEMMFG 358 Query: 338 -EYDHL------------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384 H+ IS+ TG G+E L ++ ++ + + + +RHL L Sbjct: 359 GNRPHVVAANGPNPTEIWISARTGAGIELLRRELLRLVGWQSGN-EGTFLARERHLTALR 417 Query: 385 QTVRYLEMAS--LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 Q L++A+ + LD+ AE LRLA L ITG + LL IF++FCIGK Sbjct: 418 QAQSRLDVAAEQSQRQAQALDLFAEELRLAQEHLNSITGEFTSDDLLGTIFTRFCIGK 475 >gi|313202487|ref|YP_004041145.1| tRNA modification GTPase TrmE [Methylovorus sp. MP688] gi|312441803|gb|ADQ85909.1| tRNA modification GTPase TrmE [Methylovorus sp. MP688] Length = 446 Score = 240 bits (613), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 160/449 (35%), Positives = 250/449 (55%), Gaps = 21/449 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A++T I ++R+SGP+ Q+ + P PR A+ F G+++D G+ Sbjct: 5 DTIAAIATAPGSGGIGVVRISGPASAQIAAAVLGHCPP-PRHAAYLPFKEAGGQLIDSGI 63 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 I + P S+TGED E HGG A++ +L ++ R A PGEF+RRAF N K+DL Sbjct: 64 AIFYAGPHSYTGEDVLELQAHGGPALMQLLLLRCLQL-GARQAEPGEFTRRAFLNDKLDL 122 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++AD+I++ T R ++ +SGE S ++ L ++R ++EA LDF +E D+ Sbjct: 123 AQAEAVADVINAATAEAARSAVRSLSGEFSRYIQDLLESLINLRMYVEACLDFPDE-DID 181 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S V + + + + + G ++R G ++V++G N GKSSL N LA ++VA Sbjct: 182 FISQGRVAEKLQNITDALELVFKGARQGNLLREGIQVVLVGQPNVGKSSLMNQLAGEEVA 241 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVT I GTTRD + + +EG + + DTAG+RET+D VEK+GI RT+ +ENA+ LLL Sbjct: 242 IVTPIAGTTRDTIKNVVQIEGVPLHLIDTAGLRETEDEVEKQGIARTWRALENANAALLL 301 Query: 306 KE-----INSKKEI--SFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFTGEGLE 352 + ++K I P N+ I++ K DL+S + +H IS+ G GL+ Sbjct: 302 VDAAHGITETEKSILERLPANLPKIWVHNKIDLHSEQPRQREHEGELHLYISAKLGLGLD 361 Query: 353 ELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411 L + I ++ SI + RHL L +L+ A++ + +++AE LRL Sbjct: 362 ALKAHLLKIAG--WQPAGESIFMARTRHLQALQMVQGHLQNAAVYLEQP--ELLAEELRL 417 Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A +L ITG + LL IFS+FCIGK Sbjct: 418 AQHALSSITGEFTPDDLLGEIFSRFCIGK 446 >gi|311085766|gb|ADP65848.1| tRNA modification GTPase TrmE [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] Length = 453 Score = 240 bits (613), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 169/459 (36%), Positives = 250/459 (54%), Gaps = 34/459 (7%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 ETI A T SA+ I+R+SG ++ K P R A+ F + ILDKG+ Sbjct: 5 ETIVAQVTCPGKSAVGILRISGFQT-KIVAIKILGKIPLARFATYSNFLDENNEILDKGI 63 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + FP+P S TGED E HG +++ ++ + + N+R+A PGEFS RAF NGK+DL Sbjct: 64 SLWFPAPHSLTGEDVLELQGHGSPLIMDLLIRRILSINNIRMAKPGEFSERAFLNGKMDL 123 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE--- 182 ++AES+ DLI+SETE+ R S+ + G+ S + ++ + R IE+++DFSEEE Sbjct: 124 IQAESIDDLINSETELSARASLNSLQGKFSFFIKELMNLIIEFRINIESNIDFSEEEINI 183 Query: 183 ---DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 D+ N +E+ + L LK + G ++R G KIVI G N+GKSSL N L Sbjct: 184 NMQDIINIKFRELHDKFLKLKATVLK-------GSLLREGKKIVIAGLPNSGKSSLLNIL 236 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 + D AIVTDIPGTTRD+L D+ + G ++ DTAG+R+TDD VE+ GI R + + + Sbjct: 237 SYSDRAIVTDIPGTTRDLLYEDISINGVRCELIDTAGLRDTDDKVERIGIMRAWEMIRKS 296 Query: 300 DLILLL--KEINSKKEIS----FPKNI-----DFIFIGTKSDLYSTY--TEEYDHL---- 342 D +L + K ++ K+ F +NI F+ K+DL +E D Sbjct: 297 DHVLFVIDKTLSKSKQKKICDDFMRNILNNKTQVTFVLNKNDLIKDEFGIKEIDGTAFIS 356 Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV-RYLEMASLNEKDCG 401 IS+ TGEG+ L I I N + F + +RH+ L +L + + Sbjct: 357 ISARTGEGVNILREHIIKIEKNINNESVF--IARRRHIKQLDLAYDEFLTAENTWRESEN 414 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++++AE+L + S LG+I G E LL+ IFS FCIGK Sbjct: 415 IELLAESLSIISKFLGEIIGQCTSEDLLNHIFSSFCIGK 453 >gi|260942413|ref|XP_002615505.1| hypothetical protein CLUG_04387 [Clavispora lusitaniae ATCC 42720] gi|238850795|gb|EEQ40259.1| hypothetical protein CLUG_04387 [Clavispora lusitaniae ATCC 42720] Length = 492 Score = 240 bits (613), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 163/471 (34%), Positives = 259/471 (54%), Gaps = 42/471 (8%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP-FPRKASLRYFFGLDGRILDKGL 65 TIFA+ST +AI +IR+SGP V + K KKP P++ S+R FG +G +LD+ L Sbjct: 27 TIFALSTRPGRAAIGVIRVSGPKAQYVYHQLTKSKKPPLPQRTSVRRIFGSNG-MLDEAL 85 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGIL---EELAKMPN---LRLANPGEFSRRAFE 119 + F P+++TGED E HVHGG A++ +L +EL N +R+A GEFSRRAF Sbjct: 86 TVFFRGPKTYTGEDLLELHVHGGNAIIKAVLGAIQELHDPENGTEIRMAQQGEFSRRAFM 145 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 +G++DL E E + ++I ++TE QR ++ ++GE ++ +W +++ + + +DF Sbjct: 146 SGRLDLTEIEGIREMIDADTESQRLSALASLTGENKQVFARWREEIVRNMALLTTVIDFG 205 Query: 180 EEEDVQN----FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 EE D++ FS+ E D L +I S++ + + +I+ G K+ +LG NAGKSSL Sbjct: 206 EEHDLEETKELFSTVEKSIDSLI--TEIESYLRKVRGSDILLRGIKVCLLGPPNAGKSSL 263 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--ETDDIVEKEGIKRTF 293 N LA D AIV+ I GTTRD+L + LD+ G+ V + D+AGIR E D +E+EGI+R Sbjct: 264 LNYLANNDTAIVSHIAGTTRDILDVPLDIGGFKVVVGDSAGIRSLEKADTIEQEGIRRAK 323 Query: 294 LEVENADLILLLKEINSKKEISFPKNIDF--------IFIGTKSDLY-----STYTE--- 337 D+++ + +N +++D + + K+DL + +T+ Sbjct: 324 QRSLVGDVVVAVLPVNEPLSPDLKEHMDLLRKEQKPTVVVLNKADLVEKVDKTAFTQALQ 383 Query: 338 ---EYDHLISSFTGEGLEELINKIKS---ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391 E H++S G+G++ L + + + S P I + + L L V Y Sbjct: 384 VKPENVHVVSCLNGQGMDSLREALVAHFKVASMSETSDPVVISARAQDL--LEHDVLYGL 441 Query: 392 MASLNEKDCGLDIIAEN-LRLASVSLGKITG-CVDVEQLLDIIFSKFCIGK 440 KD ++AE LR + +GKITG V VE++L ++FS FCIGK Sbjct: 442 KQFKVWKDSEDVVLAEECLRQSVEGIGKITGDAVGVEEILGVVFSSFCIGK 492 >gi|107024092|ref|YP_622419.1| tRNA modification GTPase TrmE [Burkholderia cenocepacia AU 1054] gi|116691178|ref|YP_836801.1| tRNA modification GTPase TrmE [Burkholderia cenocepacia HI2424] gi|123371157|sp|Q1BSF9|MNME_BURCA RecName: Full=tRNA modification GTPase mnmE gi|205829125|sp|A0KBN1|MNME_BURCH RecName: Full=tRNA modification GTPase mnmE gi|105894281|gb|ABF77446.1| tRNA modification GTPase trmE [Burkholderia cenocepacia AU 1054] gi|116649267|gb|ABK09908.1| tRNA modification GTPase trmE [Burkholderia cenocepacia HI2424] Length = 464 Score = 240 bits (613), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 159/466 (34%), Positives = 247/466 (53%), Gaps = 35/466 (7%) Query: 4 EKETIFAVSTGALPSAISIIRLS-----GPSCFQVCEFICKKKKPFPRKASLRYFFGLDG 58 + + I A++T A I ++R+S + + + +C +K PR AS F G Sbjct: 5 DSDPIVAIATAAGRGGIGVVRVSFGRGGEAAALPLIDALCGQKLA-PRHASYVPFLDAHG 63 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEFSR 115 LD+G+ + FP+P S+TGE E HGG V+ +L+ + + LRLA PGEF+R Sbjct: 64 APLDRGIALYFPAPHSYTGEHVLELQGHGGPIVMQLLLQRCLDAGRGFGLRLAEPGEFTR 123 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF N K+DL +AE++ADLI + TE R + + G S +D + +R +EA Sbjct: 124 RAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRQIHALVDDVITLRMLVEAT 183 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 LDF EEE + + + + ++ ++ + + G ++R G +V+ G N GKSSL Sbjct: 184 LDFPEEE-IDFLEAADARGKLAKIRAQLAHVLGDARQGALLREGLSVVLAGQPNVGKSSL 242 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 NALA ++AIVT I GTTRD + + +EG + I DTAG+RET+D VE+ GI RT+ E Sbjct: 243 LNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRETEDEVERIGIARTWSE 302 Query: 296 VENADLILLLKEINSKKEIS---------FPKNIDFIFIGTKSDLYST------YTEEYD 340 +E AD++L L ++S+ ++ FP + + + K+DL E D Sbjct: 303 IERADVVLHL--LDSRTGMTADDETIAARFPAGVPVVRVLNKTDLTGVPACVEHPAAEGD 360 Query: 341 ----HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS-- 394 HL S+ G+G++ L ++ I + + + +RHL L +L A+ Sbjct: 361 LTEVHL-SAKRGDGIDMLRAELLRIAGWQAGAEGVYL-ARERHLIALRAAQEHLAQAANH 418 Query: 395 LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++ LD+ AE LRLA L ITG + LL +IFS+FCIGK Sbjct: 419 AEQRAQSLDLFAEELRLAQEQLNAITGEFTSDDLLGVIFSRFCIGK 464 >gi|170734511|ref|YP_001766458.1| tRNA modification GTPase TrmE [Burkholderia cenocepacia MC0-3] gi|205829124|sp|B1K0Y2|MNME_BURCC RecName: Full=tRNA modification GTPase mnmE gi|169817753|gb|ACA92336.1| tRNA modification GTPase TrmE [Burkholderia cenocepacia MC0-3] Length = 464 Score = 240 bits (613), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 159/466 (34%), Positives = 247/466 (53%), Gaps = 35/466 (7%) Query: 4 EKETIFAVSTGALPSAISIIRLS-----GPSCFQVCEFICKKKKPFPRKASLRYFFGLDG 58 + + I A++T A I ++R+S + + + +C +K PR AS F G Sbjct: 5 DSDPIVAIATAAGRGGIGVVRVSFGRGGEAAALPLIDALCGQKLA-PRHASYVPFLDAHG 63 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEFSR 115 LD+G+ + FP+P S+TGE E HGG V+ +L+ + + LRLA PGEF+R Sbjct: 64 APLDRGIALYFPAPHSYTGEHVLELQGHGGPIVMQLLLQRCLDAGRGFGLRLAEPGEFTR 123 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF N K+DL +AE++ADLI + TE R + + G S +D + +R +EA Sbjct: 124 RAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRQIHALVDDVITLRMLVEAT 183 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 LDF EEE + + + + ++ ++ + + G ++R G +V+ G N GKSSL Sbjct: 184 LDFPEEE-IDFLEAADARGKLAKIRAQLAHVLGDARQGALLREGLSVVLAGQPNVGKSSL 242 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 NALA ++AIVT I GTTRD + + +EG + I DTAG+RET+D VE+ GI RT+ E Sbjct: 243 LNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRETEDEVERIGIARTWSE 302 Query: 296 VENADLILLLKEINSKKEIS---------FPKNIDFIFIGTKSDLYST------YTEEYD 340 +E AD++L L ++S+ ++ FP + + + K+DL E D Sbjct: 303 IERADVVLHL--LDSRTGMTPDDETIAARFPAGVPVVRVLNKTDLTGVPACVEHPAAEGD 360 Query: 341 ----HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS-- 394 HL S+ G+G++ L ++ I + + + +RHL L +L A+ Sbjct: 361 LTEVHL-SAKRGDGIDMLRAELLRIAGWQAGAEGVYL-ARERHLIALRAAQEHLAQAADH 418 Query: 395 LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++ LD+ AE LRLA L ITG + LL +IFS+FCIGK Sbjct: 419 AEQRAQSLDLFAEELRLAQEQLNAITGEFTSDDLLGVIFSRFCIGK 464 >gi|206558831|ref|YP_002229591.1| tRNA modification GTPase TrmE [Burkholderia cenocepacia J2315] gi|198034868|emb|CAR50740.1| putative tRNA modification GTPase [Burkholderia cenocepacia J2315] Length = 464 Score = 240 bits (613), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 159/466 (34%), Positives = 247/466 (53%), Gaps = 35/466 (7%) Query: 4 EKETIFAVSTGALPSAISIIRLS-----GPSCFQVCEFICKKKKPFPRKASLRYFFGLDG 58 + + I A++T A I ++R+S + + + +C +K PR AS F G Sbjct: 5 DSDPIVAIATAAGRGGIGVVRVSFGRGGEAAALPLIDALCGQKLA-PRHASYVPFLDAHG 63 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEFSR 115 LD+G+ + FP+P S+TGE E HGG V+ +L+ + + LRLA PGEF+R Sbjct: 64 APLDRGIALYFPAPHSYTGEHVLELQGHGGPIVMQLLLQRCLDAGRGFGLRLAEPGEFTR 123 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF N K+DL +AE++ADLI + TE R + + G S +D + +R +EA Sbjct: 124 RAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRQIHALVDDVITLRMLVEAT 183 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 LDF EEE + + + + ++ ++ + + G ++R G +V+ G N GKSSL Sbjct: 184 LDFPEEE-IDFLEAADARGKLAKIRAQLAHVLGDARQGALLREGLSVVLAGQPNVGKSSL 242 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 NALA ++AIVT I GTTRD + + +EG + I DTAG+RET+D VE+ GI RT+ E Sbjct: 243 LNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRETEDEVERIGIARTWSE 302 Query: 296 VENADLILLLKEINSKKEIS---------FPKNIDFIFIGTKSDLYST------YTEEYD 340 +E AD++L L ++S+ ++ FP + + + K+DL E D Sbjct: 303 IERADVVLHL--LDSRTGMTADDETIAARFPAGVPVVRVLNKTDLTGVPACVEHPAAEGD 360 Query: 341 ----HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS-- 394 HL S+ G+G++ L ++ I + + + +RHL L +L A+ Sbjct: 361 LTEVHL-SAKRGDGIDMLRAELLRIAGWQAGAEGVYL-ARERHLIALRAAQEHLAQAADH 418 Query: 395 LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++ LD+ AE LRLA L ITG + LL +IFS+FCIGK Sbjct: 419 AEQRAQSLDLFAEELRLAQEQLNAITGEFTSDDLLGVIFSRFCIGK 464 >gi|190171332|gb|ACE63736.1| ThdF [Cronobacter sakazakii] Length = 439 Score = 240 bits (613), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 157/439 (35%), Positives = 242/439 (55%), Gaps = 31/439 (7%) Query: 18 SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77 + I+R+SG V + + K P R A F +G LD+G+ + FP P SFTG Sbjct: 9 GGVGILRVSGQQARDVAQAVLGKL-PKARYADYLPFKDANGTALDQGIALWFPGPNSFTG 67 Query: 78 EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137 ED E HGG +++ +L+ + +P LR+A PGEFS RAF N K+DL +AE++ADLI + Sbjct: 68 EDVLELQGHGGPVILDLLLKRILTLPGLRIARPGEFSERAFLNDKLDLAQAEAIADLIDA 127 Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LN 194 +E R ++ + G S+ ++ LTH+R F+EA +DF +EE + S ++ LN Sbjct: 128 SSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEE-IDFLSDGKIEAQLN 186 Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254 +++ D+ + ++ + G ++R G K+VI G NAGKSSL NALA ++ AIVTDI GTT Sbjct: 187 EVI---GDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTT 243 Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314 RDVL + ++G + I DTAG+RE D VE+ GI+R + E+E AD +L + + + + Sbjct: 244 RDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVD-GTTTDA 302 Query: 315 SFPKNI--DFI----------FIGTKSDLYSTY---TEEYDH---LISSFTGEGLEELIN 356 + P I DFI + K+D+ +E H +S+ T EG++ L N Sbjct: 303 TDPAQIWPDFIARLPAKLPITVVRNKADVTGEQPGISEVNGHSLIRLSARTNEGVDVLRN 362 Query: 357 KIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASV 414 +K + + + +RHL L +L+ A L G +++AE LRLA Sbjct: 363 HLKQSMGFD-TSMEGGFLARRRHLQALEDAANHLQQGKAQLLGAWAG-ELLAEELRLAQQ 420 Query: 415 SLGKITGCVDVEQLLDIIF 433 +L +ITG + LL IF Sbjct: 421 ALSEITGEFTSDDLLGRIF 439 >gi|170694075|ref|ZP_02885231.1| tRNA modification GTPase TrmE [Burkholderia graminis C4D1M] gi|170141147|gb|EDT09319.1| tRNA modification GTPase TrmE [Burkholderia graminis C4D1M] Length = 464 Score = 240 bits (613), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 155/465 (33%), Positives = 247/465 (53%), Gaps = 27/465 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLS----GPSCFQVCEFICKKKKPFPRKASLRYFFGL 56 + + + I A++T I ++R+S G + Q + PR AS F Sbjct: 2 LTTDSDPIVAIATAPGRGGIGVVRISFGRAGDAAAQPLMQALTGQALAPRHASYVPFLDD 61 Query: 57 DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEF 113 +G LD+G+ + FP+P S+TGE E HGG V+ L+ + + LRLA PGEF Sbjct: 62 NGNPLDRGIALYFPAPHSYTGEHVLELQGHGGPVVLQLALQRCIDAGRAFGLRLAEPGEF 121 Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173 +RRAF N K+DL +AE++ADLI + TE R + + G S ++++ +R +E Sbjct: 122 TRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRDIHALVEEVITLRMLVE 181 Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233 A LDF EEE + + + + ++ ++S +++ + G ++R G +V+ G N GKS Sbjct: 182 ATLDFPEEE-IDFLEAADARGKLARIRERLASVLAEARQGALLREGLSVVLAGQPNVGKS 240 Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293 SL NALA ++AIVT I GTTRD + + +EG + + DTAG+R+T+D VEK GI RT+ Sbjct: 241 SLLNALAGAELAIVTPIAGTTRDKVAQTIQIEGIPLHVIDTAGLRDTEDEVEKIGIARTW 300 Query: 294 LEVENADLILLLKE----INSKKEI---SFPKNIDFIFIGTKSDLYS--TYTEEYDH--- 341 E+E AD++L L + + ++ E FP + + + K+DL +T D Sbjct: 301 SEIERADVVLHLLDARTGMTAEDETIAKRFPSGVPVVRVLNKTDLVGLPPHTRALDADLE 360 Query: 342 ----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--L 395 +S+ G+G+ L +++ I + + + +RHL L +L A+ Sbjct: 361 LSEVRLSAKQGDGVSLLRDELLRIAGWQAGAESVYL-ARERHLIALRAAQEHLATAAAHA 419 Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++ LD+ AE LRLA L ITG + LL +IFS+FCIGK Sbjct: 420 DQNSQALDLFAEELRLAQDQLNSITGEFSSDDLLGVIFSRFCIGK 464 >gi|253997708|ref|YP_003049772.1| tRNA modification GTPase TrmE [Methylotenera mobilis JLW8] gi|253984387|gb|ACT49245.1| tRNA modification GTPase TrmE [Methylotenera mobilis JLW8] Length = 449 Score = 240 bits (613), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 154/434 (35%), Positives = 234/434 (53%), Gaps = 19/434 (4%) Query: 20 ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGED 79 I ++R+SGP Q P PR A+ F DG ++D+G+ I +P+P S+TGED Sbjct: 22 IGVVRVSGP-LSQTIAVSVLGHCPKPRHAAYLDFLQADGDLIDRGIAIFYPNPHSYTGED 80 Query: 80 SAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET 139 E HGG A++ +L + R A PGEF+RRA+ N K+DL +AE++AD+I++ T Sbjct: 81 VLELQGHGGTALMQILLARCIAL-GARQAEPGEFTRRAYLNDKMDLAQAEAVADVINAAT 139 Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFL 199 + ++ +SGE S + KL +R ++EA LDF EEE + + V + + + Sbjct: 140 IEAAKSAVRSLSGEFSQRINTLLSKLIDLRMYVEACLDFPEEE-IDFITQGRVADKLDAI 198 Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259 ++ + + K G ++R G +V++G N GKSSL N LA ++VAIVT I GTTRD + Sbjct: 199 IAEMQAVFVKAKQGSLLREGINVVLVGQPNVGKSSLMNQLAGEEVAIVTAIAGTTRDTIK 258 Query: 260 IDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL-------KEINSKK 312 + + G + + DTAG+RETDD VEK GI RT+ E A + LLL E+ Sbjct: 259 NAIQINGVPLHVIDTAGLRETDDEVEKFGIARTWRATETAHIALLLVDATHGITEVEKSI 318 Query: 313 EISFPKNIDFIFIGTKSDLYS--TYTEEYDH----LISSFTGEGLEELINKIKSILSNKF 366 P+ I +++ K D+ E DH IS+ TG G++ L + + L+ Sbjct: 319 LARLPQKIPKVWVHNKIDVTQEPALITEQDHAIHIYISAKTGVGVDLLKHHLLQ-LAGYQ 377 Query: 367 KKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVE 426 + RHL L++ +L++A+ +++AE LRLA +L ITG + Sbjct: 378 NNAEGVFMARARHLSALTEVAAHLDLAASQINSA--ELVAEELRLAQEALSSITGEFTPD 435 Query: 427 QLLDIIFSKFCIGK 440 LL IFSKFCIGK Sbjct: 436 DLLGEIFSKFCIGK 449 >gi|90194126|gb|ABD92624.1| ThdF [Haemophilus parasuis] Length = 436 Score = 240 bits (613), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 160/440 (36%), Positives = 242/440 (55%), Gaps = 37/440 (8%) Query: 20 ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGED 79 I I+R+SGP +V + + K P PR A F DG +LD+G+ + F +P SFTGED Sbjct: 8 IGILRVSGPIATEVAQAVLGKC-PKPRIADYLPFKDEDGTVLDQGIALFFKAPHSFTGED 66 Query: 80 SAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET 139 E HGG +++ +L + K+ +R+A GEFS +AF N K+DL +AE++ADLI + + Sbjct: 67 VLELQGHGGQVILDLLLNRILKVKGVRIARAGEFSEQAFLNNKLDLAQAEAIADLIDATS 126 Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LNDI 196 E R +++ + GE S+ + +D + ++R+++EA +DF +EE + + ++ LN+I Sbjct: 127 EQAARSALKSLQGEFSNKINELVDSVIYLRTYVEAAIDFPDEE-IDFLADGKIEAKLNEI 185 Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 + ++ QG I+R G K+VI G NAGKSSL NALA ++ AIVTDI GTTRD Sbjct: 186 IAQLANVRQEAKQGT---ILREGMKVVIAGKPNAGKSSLLNALAGREAAIVTDIAGTTRD 242 Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316 VL + ++G + I DTAG+RE D VEK GIKR + E+E AD +LL+ + N + SF Sbjct: 243 VLREHIHIDGMPLHIIDTAGLREASDEVEKIGIKRAWDEIEQADHVLLMIDSNESQADSF 302 Query: 317 -----------PKNIDFIFIGTKSDLYSTYTEEYDHLI----------SSFTGEGLEELI 355 PKNI I K DL T E + L+ S+ T G++ L Sbjct: 303 QQEWATFLAKLPKNIPVTVIRNKVDL----TGEAESLVQADNFTVIRLSAQTKVGVDLLR 358 Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLAS 413 +K + + + +RHL L +LE L + G +++AE LR+ Sbjct: 359 EHLKKSMGYQ-SSTEGGFIARRRHLVALETAAEHLERGHIQLTQFYAG-ELLAEELRMVQ 416 Query: 414 VSLGKITGCVDVEQLLDIIF 433 +L +ITG + LL IF Sbjct: 417 NALSEITGQFTSDDLLGNIF 436 >gi|190171312|gb|ACE63726.1| ThdF [Cronobacter sakazakii] Length = 439 Score = 240 bits (612), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 157/439 (35%), Positives = 241/439 (54%), Gaps = 31/439 (7%) Query: 18 SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77 + I+R+SG V + + K P R A F DG LD+G+ + FP P SFTG Sbjct: 9 GGVGILRVSGQQARDVAQAVLGKL-PKARYADYLPFKDADGTALDQGIALWFPGPNSFTG 67 Query: 78 EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137 ED E HGG +++ +L+ + +P +R+A PGEFS RAF N K+DL +AE++ADLI + Sbjct: 68 EDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAEAIADLIDA 127 Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LN 194 +E R ++ + G S+ ++ LTH+R F+EA +DF +EE + S ++ LN Sbjct: 128 SSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEE-IDFLSDGKIEAQLN 186 Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254 +++ D+ + ++ + G ++R G K+VI G NAGKSSL NALA ++ AIVTDI GTT Sbjct: 187 EVI---GDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTT 243 Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314 RDVL + ++G + I DTAG+RE D VE+ GI+R + E+E AD +L + + + + Sbjct: 244 RDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVD-GTTTDA 302 Query: 315 SFPKNI--DFI----------FIGTKSDLYSTYT---EEYDH---LISSFTGEGLEELIN 356 + P I DFI + K+D+ E H +S+ T EG++ L N Sbjct: 303 TDPAQIWPDFIARLPAKLPITVVRNKADVTGEQPGIIEVNGHSLIRLSARTNEGVDVLRN 362 Query: 357 KIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASV 414 +K + + + +RHL L +L+ A L G +++AE LRLA Sbjct: 363 HLKQSMGFD-TSMEGGFLARRRHLQALEDAANHLQQGKAQLLGAWAG-ELLAEELRLAQQ 420 Query: 415 SLGKITGCVDVEQLLDIIF 433 +L +ITG + LL IF Sbjct: 421 ALSEITGEFTSDDLLGRIF 439 >gi|225848361|ref|YP_002728524.1| tRNA modification GTPase TrmE [Sulfurihydrogenibium azorense Az-Fu1] gi|225644654|gb|ACN99704.1| tRNA modification GTPase TrmE [Sulfurihydrogenibium azorense Az-Fu1] Length = 447 Score = 240 bits (612), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 170/456 (37%), Positives = 257/456 (56%), Gaps = 29/456 (6%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-RKASLRYFFGLDGRILD 62 +K+TI A +T +PSA+ I+R+SG ++ + I + RKA LDG +LD Sbjct: 2 KKDTIVANATPLIPSAVGIVRISGEDALKIGKQIFTLPQEIQERKAYFGKILDLDGSVLD 61 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 +GL I F +P+SFTGED E + HG + V+ I+E + + RLANPGEF+ RAF NGK Sbjct: 62 EGLFIYFKAPKSFTGEDVVEIYPHGSVPVIKKIIENVITLGG-RLANPGEFTYRAFLNGK 120 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 IDL +AE++ADLIS++TE + ++ + G+LS + L ++ S IEA+++F E Sbjct: 121 IDLTQAEAIADLISAKTEKASKAAVRLLEGKLSEKINSLRETLLNLISLIEAEINFPE-- 178 Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 DV+ S+ ++ ++L +K I + K G +I+ G K+ I+G N GKSSLFNA+ Sbjct: 179 DVEEIDSQLIVENLLKVKKSIDKLVGSYKKGSLIKEGIKLAIVGRPNVGKSSLFNAMVGY 238 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 + +IV+ GTTRD + L ++ + + DTAGIRET + VEK GI+R+ ++E AD+I Sbjct: 239 ERSIVSSYQGTTRDFIEETLKIKDIPIILLDTAGIRETAEYVEKLGIERSKQKIEEADII 298 Query: 303 LLLKEINS------KKEISFPKNIDFIFIGTKSDLYST---YTEEYDHLI--SSFTGEGL 351 L + + + KK KN I + K+DL + E+ D++I SS T +G+ Sbjct: 299 LFVIDGSQGFTDEDKKIYDEIKNKIHIIVINKADLITKPLDIFEKSDNIIYTSSVTFQGI 358 Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAEN--- 408 ++L KI IL + I + RH L Q + +E N +D + EN Sbjct: 359 KDLEEKIIEILG--ITETEDEIIINLRHYTLLKQAIEKIEKVVEN-----IDFLIENKEI 411 Query: 409 --LRLASV--SLGKITGCVDVEQLLDIIFSKFCIGK 440 L L V L +I G + E +L IFSKFCIGK Sbjct: 412 LMLDLQEVLNYLEEIVGHITTEDVLGNIFSKFCIGK 447 >gi|145590262|ref|YP_001156859.1| tRNA modification GTPase TrmE [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|205415793|sp|A4T0N1|MNME_POLSQ RecName: Full=tRNA modification GTPase mnmE gi|145048668|gb|ABP35295.1| tRNA modification GTPase trmE [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 457 Score = 240 bits (612), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 165/463 (35%), Positives = 257/463 (55%), Gaps = 29/463 (6%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M K I AV+T + + ++R+SG ++ E + + PR+A+L F D + Sbjct: 1 MMTRKVPIIAVATAPGKAGVGVVRISGQGLGELVETLFHRSLA-PRQATLLTFCDADNQP 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEFSRRA 117 +D+ L I F P SFTGED E HGG ++ +++ EL K L +A PGEF+ RA Sbjct: 60 IDQLLAIYFVGPASFTGEDVLELQCHGGPQLLELVMKRCLELGKALGLVIAEPGEFTLRA 119 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 + N K+DL +AE++ADLI +++E R + + G S I+++T +R +E+ LD Sbjct: 120 YLNNKVDLAQAEAIADLIDAQSEAAVRGAARSLQGSFSEDINGLIEEITQLRILVESTLD 179 Query: 178 FSEEED--VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 F EEE ++N ++E L + K + + + K G+I+R+G ++V+ G N GKSSL Sbjct: 180 FPEEEIEFLENAQARERLAAV---KKKLEALQAGAKQGKILRDGIQLVLAGAPNVGKSSL 236 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N LA ++VAIVT I GTTRD + + +EG + I DTAG+R+T D VE +GI+RT+ Sbjct: 237 LNRLAGEEVAIVTPIAGTTRDRVKESIQIEGVPMHIIDTAGLRKTVDEVEAKGIERTWEA 296 Query: 296 VENADLILLLKEINS-------KKEI--SFPKNIDFIFIGTKSDL------YSTYTEEYD 340 + ADL++ L N+ ++EI + P + + KSDL S+ E Sbjct: 297 IRLADLVIFLGAPNAEPGHESLREEILGALPAKCPILDVINKSDLIEGGLAVSSSNEASP 356 Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL---EMASLNE 397 LIS+ TG G++ L KI ++ + +I S +RHL L + ++ E + N Sbjct: 357 LLISAKTGAGIDALKQKILHVVGWNGAQ-EGAIVSRRRHLDCLERAAEHIAKSEQFAANG 415 Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + L++ AE L LA LG+ITG + + LL IFS+FCIGK Sbjct: 416 NNS-LELFAEELFLAQNHLGQITGKLLPDDLLGKIFSQFCIGK 457 >gi|239613201|gb|EEQ90188.1| mitochondrial GTPase [Ajellomyces dermatitidis ER-3] Length = 608 Score = 240 bits (612), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 178/553 (32%), Positives = 273/553 (49%), Gaps = 114/553 (20%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLD-- 57 ++ TI+A+ST +AI+I+R+SGP+C Q+ +C K P PR A+LR F Sbjct: 57 LDEPSPTIYALSTAPGRAAIAIVRISGPACVQIYNALCPKSPLPEPRVAALRTLFDPSVP 116 Query: 58 ---GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP----------- 103 ILD+ +++ FP+P++ TGED E H+HGG AVV +L + + Sbjct: 117 PSVNSILDRAVVLHFPAPKTVTGEDVLELHIHGGPAVVKAVLNAIPRCAESASSDKFAPS 176 Query: 104 NLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWID 163 ++R A PGEF+RRAF N ++ L + E+L + +S+ETE QRRL++ G + L+ Y +W Sbjct: 177 SIRYAEPGEFTRRAFLNDRLSLPQIEALGNTLSAETEHQRRLAIRGTNDSLAVRYERWRQ 236 Query: 164 KLTHIRSFIEADLDFSEE----EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG 219 +L + R +EA +DFSE+ E + F S + + L I+ HI GE++RNG Sbjct: 237 QLLYTRGEMEALIDFSEDQHFDESTEEFVSS-ITGETRNLVRQINMHIENASKGELLRNG 295 Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 K+ +LG NAGKSSL N + ++ AIV+ GTTRD++ + +DL GY K D AG+R Sbjct: 296 IKVALLGAPNAGKSSLLNRIVGREAAIVSSEEGTTRDIVDVGVDLGGYFCKFGDMAGLRS 355 Query: 280 TD---------DIVEKEGIKRTFLEVENADLILL---LKEINSKKEISF---PKNID--- 321 VE+EGI+R +D++++ L+E +S + + P+ ID Sbjct: 356 GHIAQAGQMPIGAVEQEGIRRAKARALESDVVIVVLSLEEGDSGRGVKLVLEPEVIDAVQ 415 Query: 322 --------FIFIGTKSDLYSTYTE---EYDHLISSFTGE--------------------- 349 I K D Y+ T L++S GE Sbjct: 416 SCIALEKHMIVAVNKFDKYTPATNTDGTAQGLVNSLAGEITSLVPHIVQDQIFLISCREA 475 Query: 350 ---------------GLEELINKIKSILS--------NKFKKLPFSIP---SHK------ 377 L+ELI K + + +KF KL + +H+ Sbjct: 476 ENEQSETADPGNIQTLLKELIRTFKRMSTPSELENGNDKFDKLYWEDSLGVTHRQSSNLQ 535 Query: 378 ---RHLYH-LSQTVRYLEMASLNEK-DCGLDII--AENLRLASVSLGKITG---CVDVEQ 427 +HL LSQT + + A E+ + +DI+ AE+LR A+ L KITG DVE Sbjct: 536 KCVQHLNDFLSQTCQTPDNAGNAEQIELNIDIVTAAEHLRFAADCLAKITGRGESGDVED 595 Query: 428 LLDIIFSKFCIGK 440 +L ++F KFC+GK Sbjct: 596 VLGVVFEKFCVGK 608 >gi|329894824|ref|ZP_08270624.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [gamma proteobacterium IMCC3088] gi|328922718|gb|EGG30052.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [gamma proteobacterium IMCC3088] Length = 460 Score = 240 bits (612), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 160/457 (35%), Positives = 241/457 (52%), Gaps = 24/457 (5%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63 + +TI A++T + IR+SGP + + + PR A F DG ++D Sbjct: 8 DTDTICAIATPPGRGGVGGIRISGPRALAIAKQLSSITNIAPRTAHFSSFKTPDGELVDT 67 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 GLL+ F +P SFTGED E HG V+N +L E+ + RLA PGEFS+RAF N K+ Sbjct: 68 GLLLFFATPRSFTGEDVVELQTHGSPIVLNRLLAEICGLGG-RLAEPGEFSKRAFLNNKL 126 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL++AE+++DLI++ TE + + + G SS + K+ +R +EA +DF EEE Sbjct: 127 DLVQAEAISDLINANTETAAKNAQNSLQGAFSSHVNGLLAKIIGLRVLVEAAIDFPEEE- 185 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 V S +V + + + ++Q G+II+ G + ++G NAGKSSL N L D Sbjct: 186 VDFISELDVQTQLNTIITETELTLNQANQGQIIQEGLTVALVGAPNAGKSSLLNQLCGLD 245 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303 AIVTDIPGTTRD L ++++G V DTAG+R TDD++E+ GI+R +E A L+L Sbjct: 246 KAIVTDIPGTTRDTLETVVNIKGVPVTFIDTAGLRLTDDVIEQAGIQRAVNTLERAQLVL 305 Query: 304 LLKEINSKKEIS------FPKNI-------DFIFIGTKSDLYS---TYTEEYDHLISSFT 347 L + ++ E S P N+ FI + K DL +E +S Sbjct: 306 FLMDASATSEQSVSLFTLLPSNLAEACLAHPFIGVSNKIDLLDGPIPQIQEATTNVSIAA 365 Query: 348 GEGLEELINKIKSILSNKFKKLPFS---IPSHKRHLYHLSQTVRYLEMASLN-EKDCGLD 403 GL I +K + + P S + +RH+ L T+ L+ + ++ + Sbjct: 366 KMGLN--IEGLKQAIIDAVGLHPESEHLFSARQRHISALQSTLSALKNGFVQLQEHAASE 423 Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++AE+LRLA ++ ITG + LL IFS FCIGK Sbjct: 424 LLAEDLRLAQQAINSITGEFTNDDLLGEIFSSFCIGK 460 >gi|119900277|ref|YP_935490.1| tRNA modification GTPase TrmE [Azoarcus sp. BH72] gi|205829056|sp|A1KCP8|MNME_AZOSB RecName: Full=tRNA modification GTPase mnmE gi|119672690|emb|CAL96604.1| probable tRNA modification GTPase [Azoarcus sp. BH72] Length = 452 Score = 240 bits (612), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 159/449 (35%), Positives = 245/449 (54%), Gaps = 20/449 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 E I A++T I ++R+SG + +C ++ P PR A+L F DG +D+G+ Sbjct: 10 EAIAAIATAPGRGGIGVVRVSGAGLTGFAQQLCGRE-PQPRLATLARFRDADGATIDEGI 68 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 L+ FP+P SFTGED E HGG V+ +L + RLA PGEF+RRAF NGK+DL Sbjct: 69 LLYFPAPASFTGEDVLELQGHGGPVVMQMLLARCLAL-GARLAEPGEFTRRAFLNGKLDL 127 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + T R ++ +SG+ S + D L +R +EA +DF EEE V+ Sbjct: 128 AQAEAVADLIEASTAAAARSALRSLSGQFSEEVLRIRDALIDLRMLVEATIDFPEEE-VE 186 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 L + ++ + + + + + G ++R G +V++G N GKSSL N LA +D A Sbjct: 187 FLDKGRALPRLAAIRTQLDALLDRARQGALLRTGMNVVLVGRPNVGKSSLLNQLAGEDRA 246 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTD+ GTTRD L + +EG + + DTAG+R+T D+VE+ GI+RT+ EVE AD++L + Sbjct: 247 IVTDVAGTTRDALREAIQIEGIPLHVIDTAGLRQTSDVVERIGIERTWREVERADVVLRV 306 Query: 306 KEINSKKEISF--------PKNIDFIFIGTKSDLYSTYTEEYDHL------ISSFTGEGL 351 + +E + P I + K DL E + +S+ +G+G+ Sbjct: 307 IDSEGAEEDALEAELAARCPSAAARITVVNKIDLLGLAPERTETAGAVRLRLSARSGDGV 366 Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411 + L ++ + + + +RHL L + + +L A L++ AE LRL Sbjct: 367 DLLRTELLRA-AGWHAHGEDVVLARERHLLALREALDHLAAAEAAASA--LELFAEELRL 423 Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A +L ITG + LL IFS+FCIGK Sbjct: 424 AQEALAGITGEFSADDLLGEIFSRFCIGK 452 >gi|189218144|ref|YP_001938786.1| tRNA modification GTPase, TrmE [Methylacidiphilum infernorum V4] gi|189185002|gb|ACD82187.1| tRNA modification GTPase, TrmE [Methylacidiphilum infernorum V4] Length = 441 Score = 239 bits (611), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 169/449 (37%), Positives = 246/449 (54%), Gaps = 22/449 (4%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK-KPFPRKASLR-YFFGLDGRILD 62 ++TI A +T SAI++IR+SGP ++ + +K K P++ R +FG + +LD Sbjct: 2 EDTIVAPATPPALSAIALIRMSGPKSLEIISSLLRKSFKGDPQRLYYRKLYFGEE--LLD 59 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 +L + SP S+TGED E HG +V ILE K RLA+PGEF++RAF NGK Sbjct: 60 DVVLSYWKSPRSYTGEDMIEISCHGNPYIVERILEACLKK-GARLASPGEFTKRAFLNGK 118 Query: 123 IDLLEAESLADLISS----ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 +DL +AE++ DLI + + + L G+S EL + + ID L + ++I DF Sbjct: 119 MDLTQAEAIIDLIHAGGMLALKSAQALQSGGLSKELLRIRAELIDILAEVEAYI----DF 174 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 EE D+Q +++ +L ++N +S+ +S L ++R G IV+ G N GKSSLFNA Sbjct: 175 PEE-DIQPEVGDQLIGRLLAMENKLSTLLSSAPLSRVLREGLTIVLAGSPNVGKSSLFNA 233 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L K++ AIV+ PGTTRD + + + +LVKI DTAG R DD +E EGI+R V+ Sbjct: 234 LLKENRAIVSPHPGTTRDTIEAECRISSFLVKIVDTAGQRVADDQIEAEGIRRAQEAVKR 293 Query: 299 ADLILLL---KEINSKKEISFPK---NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLE 352 DLIL L + S P+ I I +K+DL + H +S TG GLE Sbjct: 294 GDLILHLVSAPDDPSTDPYVLPQLQAQQKVIAIASKADLGIHPANKDKHALSIVTGMGLE 353 Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC-GLDIIAENLRL 411 EL KIK +L + F + FS + R L++ L A L K+ ++I+ L Sbjct: 354 ELEEKIKKLLES-FFPMDFSYGVNPRQQAALAKMAEALNKAILGIKNSLPPELISSELHE 412 Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +G+I G V E +LD IF KFCIGK Sbjct: 413 CLERVGEIVGLVSSEDILDKIFQKFCIGK 441 >gi|254246829|ref|ZP_04940150.1| hypothetical protein BCPG_01599 [Burkholderia cenocepacia PC184] gi|124871605|gb|EAY63321.1| hypothetical protein BCPG_01599 [Burkholderia cenocepacia PC184] Length = 464 Score = 239 bits (611), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 159/466 (34%), Positives = 247/466 (53%), Gaps = 35/466 (7%) Query: 4 EKETIFAVSTGALPSAISIIRLS-----GPSCFQVCEFICKKKKPFPRKASLRYFFGLDG 58 + + I A++T A I ++R+S + + + +C +K PR AS F G Sbjct: 5 DSDPIVAIATAAGRGGIGVVRVSFGRGGEATALPLIDALCGQKLA-PRHASYVPFLDAHG 63 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEFSR 115 LD+G+ + FP+P S+TGE E HGG V+ +L+ + + LRLA PGEF+R Sbjct: 64 APLDRGIALYFPAPHSYTGEHVLELQGHGGPIVMQLLLQRCLDAGRGFGLRLAEPGEFTR 123 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF N K+DL +AE++ADLI + TE R + + G S +D + +R +EA Sbjct: 124 RAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRQIHALVDDVITLRMLVEAT 183 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 LDF EEE + + + + ++ ++ + + G ++R G +V+ G N GKSSL Sbjct: 184 LDFPEEE-IDFLEAADARGKLAKIRAQLAHVLGDARQGALLREGLSVVLAGQPNVGKSSL 242 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 NALA ++AIVT I GTTRD + + +EG + I DTAG+RET+D VE+ GI RT+ E Sbjct: 243 LNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRETEDEVERIGIARTWSE 302 Query: 296 VENADLILLLKEINSKKEIS---------FPKNIDFIFIGTKSDLYST------YTEEYD 340 +E AD++L L ++S+ ++ FP + + + K+DL E D Sbjct: 303 IERADVVLHL--LDSRTGMTADDETIAARFPAGVPVVRVLNKTDLTGVPACVEHPAAEGD 360 Query: 341 ----HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS-- 394 HL S+ G+G++ L ++ I + + + +RHL L +L A+ Sbjct: 361 LTEVHL-SAKRGDGIDMLRAELLRIAGWQAGAEGVYL-ARERHLIALRAAQDHLAQAADH 418 Query: 395 LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++ LD+ AE LRLA L ITG + LL +IFS+FCIGK Sbjct: 419 AEQRAQSLDLFAEELRLAQEQLNAITGEFTSDDLLGVIFSRFCIGK 464 >gi|190171314|gb|ACE63727.1| ThdF [Cronobacter sakazakii] Length = 439 Score = 239 bits (611), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 157/439 (35%), Positives = 241/439 (54%), Gaps = 31/439 (7%) Query: 18 SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77 + I+R+SG V + + K P R A F DG LD+G+ + FP P SFTG Sbjct: 9 GGVGILRVSGQQARDVAQAVLGKL-PKARYADYLPFKDADGTALDQGIALWFPGPNSFTG 67 Query: 78 EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137 ED E HGG +++ +L+ + +P +R+A PGEFS RAF N K+DL +AE++ADLI + Sbjct: 68 EDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAEAIADLIDA 127 Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LN 194 +E R ++ + G S+ ++ LTH+R F+EA +DF +EE + S ++ LN Sbjct: 128 SSEQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEE-IDFLSDGKIEAQLN 186 Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254 +++ D+ + ++ + G ++R G K+VI G NAGKSSL NALA ++ AIVTDI GTT Sbjct: 187 EVI---GDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTT 243 Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314 RDVL + ++G + I DTAG+RE D VE+ GI+R + E+E AD +L + + + + Sbjct: 244 RDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVD-GTTTDA 302 Query: 315 SFPKNI--DFI----------FIGTKSDLYSTY---TEEYDH---LISSFTGEGLEELIN 356 + P I DFI + K+D+ +E H +S+ T EG+ L N Sbjct: 303 TDPAQIWPDFIARLPAKLPITVVRNKADVTGEQPGISEVNGHSLIRLSARTNEGVGVLRN 362 Query: 357 KIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASV 414 +K + + + +RHL L +L+ A L G +++AE LRLA Sbjct: 363 HLKQSMGFD-TSMEGGFLARRRHLQALEDAANHLQQGKAQLLGAWAG-ELLAEELRLAQQ 420 Query: 415 SLGKITGCVDVEQLLDIIF 433 +L +ITG + LL IF Sbjct: 421 ALSEITGEFTSDDLLGRIF 439 >gi|159902748|ref|YP_001550092.1| tRNA modification GTPase TrmE [Prochlorococcus marinus str. MIT 9211] gi|159887924|gb|ABX08138.1| putative thiophen / furan oxidation protein [Prochlorococcus marinus str. MIT 9211] Length = 455 Score = 239 bits (611), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 157/465 (33%), Positives = 257/465 (55%), Gaps = 46/465 (9%) Query: 5 KETIFAVSTGALPS--AISIIRLSGPSCFQVCEFICKKKKPFPRK---ASLRYFFG---- 55 +ETI A+++ P +++IR+SG S + C+ I P +S R +G Sbjct: 8 EETIAAIASAVSPGQGGVAVIRISGRSAQETCKQIVH----IPGDQIWSSHRIVYGHVIE 63 Query: 56 -LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114 + +D+ L+++ +P SFTGED E H HGG+ V IL ++ + P++R A PGEFS Sbjct: 64 KKTQKHIDEVLILIMEAPRSFTGEDVVEIHCHGGLISVQRILNQILEQPDVRRALPGEFS 123 Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174 +RA NG++DL++AE++ DLIS++++ L+M G+ G+++ DKL S IEA Sbjct: 124 QRAVLNGRLDLIQAEAINDLISAKSQKAAELAMAGVDGDITQRINSLRDKLLDQLSEIEA 183 Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234 +DF E+D+ + + +L D++ + N++ + K G I RNG KI ++G N GKSS Sbjct: 184 RIDF--EDDLPPLNKQALLADLIKINNELQQLVIDAKQGCIFRNGLKIALIGLPNVGKSS 241 Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294 + N L+K++ AIVT +PGTTRD+L ++ LEG + + DTAGIR T+D VEK G+ ++ Sbjct: 242 VLNRLSKRERAIVTALPGTTRDLLESEIILEGIPITLLDTAGIRSTNDEVEKIGVAKSKN 301 Query: 295 EVENADLILLLKEIN-----SKKEI--SFPKNIDFIFIGTKSDL-YSTYTEEYDHLISSF 346 + AD++L + +++ + +++ PK + + IG K+D+ T + + + S+ Sbjct: 302 ALMTADIVLFIFDMSIGWTTADQDLFDQIPKQMPTLLIGNKADIKVQQDTNQAEIIFSAL 361 Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG----- 401 TG+G LI + I H+ H ++ R L++ + K G Sbjct: 362 TGQGENNLIQALLKICG-----------LHETHGIEIALNERQLDLVNAASKALGKTLEV 410 Query: 402 ------LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D +LR A LG++TG E LLD IFS+FCIGK Sbjct: 411 TTQELPWDFWTIDLRDAIQKLGELTGHEISEALLDRIFSRFCIGK 455 >gi|161702952|ref|YP_370756.2| tRNA modification GTPase TrmE [Burkholderia sp. 383] gi|205829162|sp|Q39BQ4|MNME_BURS3 RecName: Full=tRNA modification GTPase mnmE Length = 464 Score = 239 bits (611), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 159/466 (34%), Positives = 247/466 (53%), Gaps = 35/466 (7%) Query: 4 EKETIFAVSTGALPSAISIIRLS-----GPSCFQVCEFICKKKKPFPRKASLRYFFGLDG 58 + + I A++T A I ++R+S + + + +C +K PR AS F G Sbjct: 5 DSDPIVAIATAAGRGGIGVVRVSFGRGGEAAALPLIDALCGQKLA-PRHASYVPFLDEHG 63 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEFSR 115 LD+G+ + FP+P S+TGE E HGG V+ +L+ + + LRLA PGEF+R Sbjct: 64 APLDRGIALYFPAPHSYTGEHVLELQGHGGPIVMQLLLQRCLDAGRGFGLRLAEPGEFTR 123 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF N K+DL +AE++ADLI + TE R + + G S +D + +R +EA Sbjct: 124 RAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRQIHALVDDVITLRMLVEAT 183 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 LDF EEE + + + + ++ ++ + + G ++R G +V+ G N GKSSL Sbjct: 184 LDFPEEE-IDFLEAADARGKLAKIRAQLAHVLGDARQGALLREGLSVVLAGQPNVGKSSL 242 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 NALA ++AIVT I GTTRD + + +EG + I DTAG+RET+D VE+ GI RT+ E Sbjct: 243 LNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRETEDEVERIGIARTWSE 302 Query: 296 VENADLILLLKEINSKKEIS---------FPKNIDFIFIGTKSDLYSTY------TEEYD 340 +E AD++L L ++S+ ++ FP + + + K+DL E D Sbjct: 303 IERADVVLHL--LDSRNGMTADDETIAARFPGGVPVVRVLNKTDLTGVAACVEHPAAEGD 360 Query: 341 ----HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS-- 394 HL S+ G+G++ L ++ I + + + +RHL L +L A+ Sbjct: 361 LTEVHL-SAKRGDGIDMLRAELLRIAGWQAGAEGVYL-ARERHLIALRAAQEHLAQAADH 418 Query: 395 LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++ LD+ AE LRLA L ITG + LL +IFS+FCIGK Sbjct: 419 AEQRAQSLDLFAEELRLAQEQLNAITGEFTSDDLLGVIFSRFCIGK 464 >gi|325922757|ref|ZP_08184491.1| tRNA modification GTPase trmE [Xanthomonas gardneri ATCC 19865] gi|325546753|gb|EGD17873.1| tRNA modification GTPase trmE [Xanthomonas gardneri ATCC 19865] Length = 446 Score = 239 bits (611), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 151/449 (33%), Positives = 244/449 (54%), Gaps = 12/449 (2%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+ TI A+++ A I I+RLSGP Q+ + PR A F G + Sbjct: 1 MSSSPSTIVAIASAAGTGGIGIVRLSGPQAAQIAAALGIATLQ-PRHARYARFRDAQGEV 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D G+ + FP+P SFTGED E HG ++ ++ + R A GEFS RAF N Sbjct: 60 IDDGIALWFPAPHSFTGEDVLELQGHGSPVLLRQVVARCIAL-GARQARAGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GK+DL +AE++ADLI++ R + + G S D LT +R +EA +DF++ Sbjct: 119 GKLDLAQAEAIADLIAAGDLRAARAARRSLDGVFSRRVDAVSDSLTRLRIHVEAAIDFAD 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E + +V + + ++ ++ + + G +R+G V++G NAGKSSL NALA Sbjct: 179 EP-LDTLGGTQVRDGLTHARSLLAQLLRDAERGRKLRDGLHAVLIGPPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 + AIVTD+ GTTRD L + L+G+ + + DTAG+R+ D +E+EG++R E++ AD Sbjct: 238 GSERAIVTDVAGTTRDTLQETIQLDGFELTLVDTAGLRDGGDAIEREGMRRARAELQRAD 297 Query: 301 LILLLKEINSKKEI--SFPKNIDFI----FIGTKSDLYSTYTE-EYDHL-ISSFTGEGLE 352 L L++ + + + ID + +I K DL + + D + +S+ TG+GLE Sbjct: 298 LALIVLDARDPQAARDAIGDAIDVVPRQLWIHNKCDLLVDALKLDSDAIAVSAVTGQGLE 357 Query: 353 ELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411 +L +++ + L + + + + RH+ L + ++ + A L L++ AE LRL Sbjct: 358 QLHIRLRELALGDGVESVDGEFSARTRHVEALRRAEQHADAADLELGFEQLELAAEELRL 417 Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A +LG+ITG + ++LL IFS FCIGK Sbjct: 418 AHEALGEITGKLSADELLGKIFSSFCIGK 446 >gi|241950667|ref|XP_002418056.1| GTPase MSS1, mitochondrial precursor [Candida dubliniensis CD36] gi|223641395|emb|CAX43355.1| GTPase MSS1, mitochondrial precursor [Candida dubliniensis CD36] Length = 536 Score = 239 bits (611), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 162/488 (33%), Positives = 266/488 (54%), Gaps = 54/488 (11%) Query: 2 NHEKETIFAVSTGALPSAISIIRLSGP-SCFQVCEFICKKKKPFPRKASLRYFFGLDGR- 59 N K T+FA+ST SAI+++R+SGP S + + K P R AS+R + R Sbjct: 54 NPLKPTVFALSTKFGKSAIAVVRISGPQSKYIYHKLTNSTKPPKNRIASVRKLYSFGHRC 113 Query: 60 -----ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN------LRLA 108 LD+ L + P P+++TGED E H+HGG++++ +L+ + + + +R A Sbjct: 114 NQKSVFLDEALTLFLPGPKTYTGEDLLELHLHGGVSIIKSVLQSIKNLHDPSNGIMIRQA 173 Query: 109 NPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHI 168 + GEFS++AF NG++DL E E + D+I++ETE QR S+ SG+ + W +++ + Sbjct: 174 DRGEFSKQAFYNGRLDLTELEGINDMINAETESQRLASLASSSGQTKIEFMNWRNEIVNQ 233 Query: 169 RSFIEADLDFSEEEDVQNFSS--KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILG 226 + + +DF E+ D++ ++V +I ++ +I +++ + K +I+ NG ++ +LG Sbjct: 234 MANLTMIIDFGEDHDIEETDQIIQDVKENIAKIELEIKAYLLKVKSSQILLNGIQLALLG 293 Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--ETDDIV 284 NAGKSS+ N LA KD AIV++I GTTRD+L I L++ GY V + DTAGIR E D + Sbjct: 294 PPNAGKSSILNILANKDAAIVSEIAGTTRDILDIPLEIGGYKVVVGDTAGIRSFEEADSI 353 Query: 285 EKEGIKRTFLEVENADLILL-------------LKE-----INSKKEISFPKNIDFIFIG 326 E+EGIKR ADL+++ LKE + K+I N +F+ Sbjct: 354 EQEGIKRAKKRSMLADLVIVVLDPISVEKDPLELKEHLEALVKENKQILIVLNKQDLFVS 413 Query: 327 TKSDLYSTYTE------EYDHLISSFTGEGLEELINKIKSILSNKFKKL-------PFSI 373 ++ S Y++ Y +++S TG G++ L + L KFK L P + Sbjct: 414 RSEEMISKYSQVFNLPKNYFYVVSCSTGSGIDNL----QKALIEKFKDLSQSETSDPIIV 469 Query: 374 PSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITG-CVDVEQLLDII 432 S + + + E + D L + A+ LR + +GKITG +D+E++LD++ Sbjct: 470 SSRVQDILENDILFGFKEFYQWADADDVL-LAADCLRQSVDGIGKITGQSIDLEEILDVV 528 Query: 433 FSKFCIGK 440 FS FCIGK Sbjct: 529 FSSFCIGK 536 >gi|310817163|ref|YP_003965127.1| tRNA modification GTPase [Ketogulonicigenium vulgare Y25] gi|308755898|gb|ADO43827.1| tRNA modification GTPase [Ketogulonicigenium vulgare Y25] Length = 425 Score = 239 bits (611), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 156/444 (35%), Positives = 238/444 (53%), Gaps = 29/444 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TIFA++T + +++IRLSGP+ E + P P ++D+ L Sbjct: 2 DTIFALATARGRAGVAVIRLSGPAARTAVEQLAG---PLPVHGRSLRLLREGAEVVDEAL 58 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 ++ F SFTGE E H+HG A+V +L L +LR A GEF+RRA ENG++DL Sbjct: 59 VLSFDHGRSFTGEVVVELHLHGSPAIVQAVLRILGNNADLRAAEAGEFTRRALENGRLDL 118 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 + E LADLI +ETEMQRR +M G + + W KL + IEA +DF+ +EDV Sbjct: 119 AQVEGLADLIDAETEMQRRQAMRIFQGAMGAKANVWRAKLLRAAALIEATIDFA-DEDVP 177 Query: 186 NFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 EV L D+L + + ++ + E +R+G+++ I+G N GKS+L N LA + Sbjct: 178 VDVRPEVEGLLVDVLIA---LEAEVAGVSVAERLRDGFEVAIVGRPNVGKSTLLNYLAGR 234 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 D AI + + GTTRDV+ + +D+ G V + DTAG+RET D VE+ GI R E AD+ Sbjct: 235 DAAITSHVAGTTRDVIEVRMDIAGLPVTLLDTAGLRETADEVEQIGIARARSRAELADIR 294 Query: 303 LLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD-HLISSFTGEGLEELINKIKSI 361 + + + E+ D + L+ E D + IS TG G++ L I+ Sbjct: 295 VHIVAADELPELPIQPG-DIV-------LHPRGDETGDVNGISGLTGYGVQRLTGHIEQE 346 Query: 362 LSNKFKKLPFSI-PSHKRHLYH----LSQTVRYLEMASLNEKDCGLDIIAENLRLASVSL 416 LS + + ++ H+ + H +++ + L A EK D++AE+LRLA ++ Sbjct: 347 LSARVASVGVAMRERHRLAMVHAITLMAEVIDLLPDAV--EK---ADLVAEDLRLAIRAI 401 Query: 417 GKITGCVDVEQLLDIIFSKFCIGK 440 + G +DVE +L IFS FCIGK Sbjct: 402 DSLVGRIDVEDILGEIFSSFCIGK 425 >gi|21233655|ref|NP_639572.1| tRNA modification GTPase TrmE [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66770621|ref|YP_245383.1| tRNA modification GTPase TrmE [Xanthomonas campestris pv. campestris str. 8004] gi|25009496|sp|Q8P340|MNME_XANCP RecName: Full=tRNA modification GTPase mnmE gi|81303432|sp|Q4UNL0|MNME_XANC8 RecName: Full=tRNA modification GTPase mnmE gi|21115528|gb|AAM43454.1| thiophene and furan oxidation protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575953|gb|AAY51363.1| thiophene and furan oxidation protein [Xanthomonas campestris pv. campestris str. 8004] Length = 446 Score = 239 bits (611), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 152/449 (33%), Positives = 241/449 (53%), Gaps = 12/449 (2%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 MN TI A++T A I I+RLSGP Q+ + R A F G + Sbjct: 1 MNALPSTIVAIATAAGTGGIGIVRLSGPQSVQIAAALGIAGLQ-SRHARYARFRDAQGEV 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D G+ + FP+P SFTGE+ E HG ++ ++ + R A GEFS RAF N Sbjct: 60 IDDGIAVWFPAPHSFTGEEVVELQGHGSPVLLRQLVARCIAL-GARQARAGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GK+DL +AE++ADLI++ R + + G S + LT +R +EA +DF++ Sbjct: 119 GKLDLAQAEAIADLIAAGDLRAARAARRSLDGVFSRRVDAVSESLTRLRIHVEAAIDFAD 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E + +V ++ + ++ + + G +R+G V++G NAGKSSL NALA Sbjct: 179 EP-LDTLGGAQVREELTRTRALLAQLLRDAERGRKLRDGLHAVLIGPPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 D AIVTD+ GTTRD L + L+G+ + + DTAG+RE D +E+EG++R E++ AD Sbjct: 238 GSDRAIVTDVAGTTRDTLHEAIQLDGFELTLVDTAGLREGGDAIEREGMRRARAELQRAD 297 Query: 301 LILLLKEINSKKEI--SFPKNIDFI----FIGTKSDLYSTYTE-EYDHL-ISSFTGEGLE 352 L L++ + + + ID + +I K DL + + D + +S+ TG+GLE Sbjct: 298 LALIVLDARDPQAARDALGDAIDAVPRRLWIHNKCDLLAVAGPMDADAIAVSAVTGQGLE 357 Query: 353 ELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411 L +++ + L + + + + RH+ L + ++ + A L + L++ AE LRL Sbjct: 358 HLHTRLRELALGDGIESVDGEFSARTRHVDALHRAEQHADAADLELRYEQLELAAEELRL 417 Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A +LG+ITG + + LL IFS FCIGK Sbjct: 418 AHEALGEITGKLSADDLLGKIFSSFCIGK 446 >gi|325294918|ref|YP_004281432.1| tRNA modification GTPase mnmE [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065366|gb|ADY73373.1| tRNA modification GTPase mnmE [Desulfurobacterium thermolithotrophum DSM 11699] Length = 463 Score = 239 bits (611), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 168/462 (36%), Positives = 263/462 (56%), Gaps = 30/462 (6%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK-----KKKPFPRKASLRYFFGLDG- 58 ++TI A+ T AI I+R+SG ++ + I + KK+ F + + Y +D Sbjct: 6 EDTIAAIGTPIGKGAIGIVRISGKDSLKILKEIFRTKEGSKKEKFENR-KMHYGLVVDRF 64 Query: 59 -RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 +D+ L + +P++FTGED E H HGGI VV IL E+ RLA PGEFS RA Sbjct: 65 EEPIDEVLAVYMRAPKTFTGEDIVEIHSHGGIVVVRKILREVLS-KGARLAEPGEFSMRA 123 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NGKIDL++AE++ +LI++ +E+ +L+++ + G LS+ + DKL ++++IEA +D Sbjct: 124 FINGKIDLVQAEAINELINATSEVGAKLALKQLEGALSNKIKELRDKLLEVKAYIEAAVD 183 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 F +EE ++ F + + IL + I +S K G++++ G K+ I+G N GKSSL N Sbjct: 184 FPDEE-IEIFETGHIREKILEIVEKIEKLVSTYKDGKVLKEGIKVAIVGRPNVGKSSLLN 242 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 A+ K++ AIVT+IPGTTRD++ + L+G +++ DTAGIRE D VE+ GI+RT +E Sbjct: 243 AILKEERAIVTEIPGTTRDIIEETVTLKGIPLRLIDTAGIREAIDKVEQIGIERTMKSLE 302 Query: 298 NADLILLL-------KEINSKKEISFPKNIDFIFIGTKSDLYSTYT--EEYDHL----IS 344 AD+IL + E + K K + I + K DL + E D +S Sbjct: 303 EADVILFVIDGSIGFTEEDRKISKVLKKKENVILVINKKDLGLKLSCRESIDWKECVELS 362 Query: 345 SFTGEGLEELINKIKSIL---SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401 + + EG++EL KI +++ K + +++RH L + L + ++ D G Sbjct: 363 AKSTEGIDELGEKIVNLVLLEPETILKGEEPLLTNERHRELLESAKKSL-LKVIDSLDTG 421 Query: 402 L---DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + I+ ++ A SLGKI G V E +LDIIFSKFCIGK Sbjct: 422 FESPEFISMDIDEALYSLGKIVGQVTTEDMLDIIFSKFCIGK 463 >gi|119508848|ref|ZP_01628000.1| tRNA modification GTPase [Nodularia spumigena CCY9414] gi|119466377|gb|EAW47262.1| tRNA modification GTPase [Nodularia spumigena CCY9414] Length = 463 Score = 239 bits (611), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 162/460 (35%), Positives = 250/460 (54%), Gaps = 32/460 (6%) Query: 7 TIFAVSTGALPS--AISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFG-----LD 57 TI A++T +P ++SI+R+SG + + F ++ + S R +G Sbjct: 10 TIAAIATAVIPQQGSVSIVRVSGSQAMAIAQALFSAPGQQVWE---SHRILYGHIRHPQT 66 Query: 58 GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 ++D+ LL++ +P S+T ED EFH HGGI V +L+ L RLA PGEF+ RA Sbjct: 67 QALVDEALLLIMQAPRSYTREDVVEFHCHGGIMAVQQVLQ-LCLEQGARLAQPGEFTLRA 125 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NG++DL +AES+ADL+ + + + ++ G+ G+L+S Q I + IEA +D Sbjct: 126 FLNGRLDLTQAESIADLVGARSPQAAQTALAGLQGKLASPIRQLRANCLDILAEIEARID 185 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 F EED+ K +++DI + +IS ++ GE++R G K+ I+G N GKSSL N Sbjct: 186 F--EEDLPPLDHKGIISDIDHVAAEISKFLATKDKGELLRTGLKVAIVGRPNVGKSSLLN 243 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 A ++ D AIVTD+PGTTRDV+ L + G V++ DTAGIRET D VEK G++R+ Sbjct: 244 AWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETVDQVEKIGVERSRRAAN 303 Query: 298 NADLILLLKEIN-----SKKEI-SFPKNIDFIFIGTKSDLYST-------YTEEYDHLIS 344 ADL+LL + + S +EI ++ I + K DL T Y +++ Sbjct: 304 AADLVLLTIDASAGWTESDQEIYDQVQHRPLILVINKIDLVETASIDSGKYPHNIHQIVT 363 Query: 345 SFTG--EGLEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-C 400 + +G++ L I +I+ + K + + ++R L+Q LE + D Sbjct: 364 TIAAKNQGIDALETAILNIVQTGKVQAADMDLAINQRQAAALTQAKISLEQVQVTITDQL 423 Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LD +LR A +LG+ITG E +LD IFS+FCIGK Sbjct: 424 PLDFWTIDLRGAIQALGEITGEQVTESVLDRIFSRFCIGK 463 >gi|190171350|gb|ACE63745.1| ThdF [Cronobacter turicensis] Length = 439 Score = 239 bits (610), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 156/437 (35%), Positives = 242/437 (55%), Gaps = 31/437 (7%) Query: 20 ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGED 79 + I+R+SG V + + K P R A F DG LD+G+ + FP P SFTGED Sbjct: 11 VGILRVSGQQARDVAQAVLGKL-PKARYADYLPFKDADGTALDQGIALWFPGPNSFTGED 69 Query: 80 SAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET 139 E HGG +++ +L+ + +P +R+A PGEFS RAF N K+DL +AE++ADLI + + Sbjct: 70 VLELQGHGGPVILDLLLKRILTIPGVRIAKPGEFSERAFLNDKLDLAQAEAIADLIDASS 129 Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LNDI 196 E R ++ + G S+ ++ LTH+R F+EA +DF +EE + S ++ LN++ Sbjct: 130 EQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEE-IDFLSDGKIEAQLNEV 188 Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 + D+ + ++ + G ++R G K+VI G NAGKSSL NALA ++ AIVTDI GTTRD Sbjct: 189 I---GDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRD 245 Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316 VL + ++G + I DTAG+RE D VE+ GI+R + E+E AD +L + + + + + Sbjct: 246 VLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVD-GTTTDATD 304 Query: 317 PKNI--DFI----------FIGTKSDLYSTY---TEEYDH---LISSFTGEGLEELINKI 358 P I DFI + K+D+ +E H +S+ T +G++ L N + Sbjct: 305 PAQIWPDFIARLPAKLPITVVRNKADVTGEQPGLSEVNGHSLIRLSARTSDGVDVLRNHL 364 Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSL 416 K + + + +RHL L +L+ A L G +++AE LRLA +L Sbjct: 365 KQSMGFD-TSMEGGFLARRRHLQALEDAANHLQQGKAQLLGAWAG-ELLAEELRLAQQAL 422 Query: 417 GKITGCVDVEQLLDIIF 433 +ITG + LL IF Sbjct: 423 SEITGEFTSDDLLGRIF 439 >gi|161899035|ref|YP_077161.2| tRNA modification GTPase TrmE [Symbiobacterium thermophilum IAM 14863] gi|205829222|sp|Q67J33|MNME_SYMTH RecName: Full=tRNA modification GTPase mnmE Length = 457 Score = 239 bits (610), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 159/470 (33%), Positives = 251/470 (53%), Gaps = 49/470 (10%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGL--DG 58 +ETI A++TGA I I+R+SG QV E I + ++ P R ++ Y + + G Sbjct: 3 EETIAAIATGAGEGGIGIVRISGADALQVAERIFRPRRGRPLGCRRSHTVTYGWVVTPGG 62 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 +D+ L +V P S+TGED E HGG V +LE+ A RLA PGEF+RRAF Sbjct: 63 DRIDEALALVMRGPHSYTGEDVVELQCHGGQLAVRRVLEQ-ALQAGARLAEPGEFTRRAF 121 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG++DL +AE++ DLI ++T+ ++ + G L G+ ++L + + +EAD+DF Sbjct: 122 LNGRLDLSQAEAVVDLIRAKTDRAMAAAVAHLRGSLRQAIGRIRERLMEMMAHLEADIDF 181 Query: 179 SEEE-DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 E E +VQ + +EV + ++ + + G I+R G + V+ G N GKSSL N Sbjct: 182 PELELEVQ--TREEVAAGCAWCLGEVERLLGGARTGRILREGLRAVLAGRPNVGKSSLLN 239 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 L +++ AIVT IPGTTRDV+ ++L G V++ DTAG+R TDD VE+ G+ RT + Sbjct: 240 RLVRENRAIVTPIPGTTRDVIAEWVELGGVPVQLFDTAGLRPTDDPVERIGVARTHEALA 299 Query: 298 NADLILLLKEINS------KKEIS-FPKNIDFIFIGTKSDLYSTYTEEYDHL-------- 342 A L+L++ + + ++ IS P+ + + K DL + E L Sbjct: 300 QAHLVLVVVDAAAGLGPEDREWISQLPQGAARVGVANKIDLNPAF--ELSALREALGGAP 357 Query: 343 ---ISSFTGEGLEELINKIKSILSNKF---------KKLPFSIPSHKRHLYHLSQTVRYL 390 +S+ TGEG + L ++ + + F + +I + HL T+ Sbjct: 358 VVGVSAETGEGFDALEAEVARV-AGAFDASEELLVNARQAEAIRRARNHLRDAQATL--- 413 Query: 391 EMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E G +++A +LR A ++LG++TG E+LLD IFS+FCIGK Sbjct: 414 ------ESGLGDELVAIDLRAAWMALGEVTGETAGEELLDQIFSRFCIGK 457 >gi|50294530|ref|XP_449676.1| hypothetical protein [Candida glabrata CBS 138] gi|49528990|emb|CAG62652.1| unnamed protein product [Candida glabrata] Length = 487 Score = 239 bits (610), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 166/487 (34%), Positives = 264/487 (54%), Gaps = 53/487 (10%) Query: 1 MNHEKE---TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGL 56 ++H ++ TI+++ T SA+S+IR+SG V + ++ P R+A LR + Sbjct: 7 LSHTRQRLPTIYSMVTPRAKSAVSVIRVSGDKAQYVYRKLTRRDDVPRSRQACLRGLYNG 66 Query: 57 DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN------LRLANP 110 D ++D+ L++ F SP SFTGED EF VHGG AV +L + + N +R+A+ Sbjct: 67 DNELIDRALVLYFKSPGSFTGEDVVEFQVHGGRAVSESVLSAIGSLNNRDQDVEIRMADR 126 Query: 111 GEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRS 170 GEFSRR+F NGK DL E + LI+++TE QRR +M +G+ +L+ +W D + Sbjct: 127 GEFSRRSFLNGKADLTGLEGINTLINADTEAQRRAAMGSFTGKNKALFNRWRDIAIQNSA 186 Query: 171 FIEADLDFSEEEDVQNFSSK---EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227 + A +DFSE+ D + + EV +++ L+ +I + I++ I+ NG + +LG Sbjct: 187 QLTAIIDFSEDSDFADEYTAVMAEVRQELMGLRTEIGNFIARVTKASIVENGINMTLLGA 246 Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEK 286 N GKSSL N +A D++IV+DIPGTTRD+++ +++ GY V + DTAGIR +T D +EK Sbjct: 247 PNVGKSSLLNQIASDDISIVSDIPGTTRDIVSSIVNINGYKVNLFDTAGIRVDTTDPIEK 306 Query: 287 EGIKRTFLEVENADLIL---------------LLKEIN-SKKEISFPKN-IDFIFIGTKS 329 GI++ F + ++D+ + LLK + S EI F N ID + K Sbjct: 307 MGIEKAFKRIGSSDICICVIDGTQPLPLNVLDLLKSSDLSGSEIIFVVNKIDIVDDSCKL 366 Query: 330 DLYSTY-----TEEYDHLISSFTGEGLEELINKIKSILSNKFKKL--------PFSIPSH 376 Y T +S G++EL+ ++L+ KFK L P + Sbjct: 367 SKIQQYIGNNLTGCKICFVSCLKSTGIDELV----TVLTGKFKTLTQNEENEDPIIVSDR 422 Query: 377 KRHLYHLSQTVRYLEMASLNEKDCGLDII--AENLRLASVSLGKITG-CVDVEQLLDIIF 433 + + L + V Y L +D DI+ E+LR +GKITG + +E++LD++F Sbjct: 423 VKEI--LEKDVLYGIDQFLQIQDDMHDIVIATEHLRYVIDGIGKITGEVIGLEEVLDVVF 480 Query: 434 SKFCIGK 440 SKFC+GK Sbjct: 481 SKFCVGK 487 >gi|254496744|ref|ZP_05109603.1| tRNA modification GTPase TrmE [Legionella drancourtii LLAP12] gi|254354039|gb|EET12715.1| tRNA modification GTPase TrmE [Legionella drancourtii LLAP12] Length = 411 Score = 239 bits (610), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 151/409 (36%), Positives = 238/409 (58%), Gaps = 20/409 (4%) Query: 45 PRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN 104 PR A+ F+ ++D+GL++ F +P SFTGED E HG V++ + + ++ Sbjct: 10 PRLATFCSFYS--DSLIDQGLMLYFKAPHSFTGEDVVEIQAHGSPVVLDMLTKACIEV-G 66 Query: 105 LRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDK 164 RLA PGEFS RAF N KIDL +AE++ADLI + ++ R++++ + GE S+ Q ++ Sbjct: 67 ARLARPGEFSERAFLNDKIDLTQAEAIADLIQASSQTAARMALKSLQGEFSNKINQLNEQ 126 Query: 165 LTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVI 224 L ++R ++EA +DF EEE + + +V + + ++++ Q G ++R G +VI Sbjct: 127 LIYLRLYVEAAIDFPEEE-IDFLNDGKVATLLKTILAELTAIRLQANQGVLLREGLSLVI 185 Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV 284 G NAGKS+L N LA +D+AIVT+I GTTRDV+ + L+ + I DTAG+RE+DD+V Sbjct: 186 AGRPNAGKSTLINNLAGRDIAIVTEIAGTTRDVMREHILLDDIPLHIIDTAGLRESDDVV 245 Query: 285 EKEGIKRTFLEVENADLILLLKEINSK-------KEI--SFPKNIDFIFIGTKSDLYSTY 335 EKEGIKR + E++ AD +LL+ +IN KEI + P ++ I + K D + Sbjct: 246 EKEGIKRAWQELKKADCVLLVVDINDSEHHHLLTKEIRAALPTDVPIITVFNKIDTVAQA 305 Query: 336 TEEYDHLI--SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA 393 + +H + S+ +G+G+ L IK ++ + + F + +RHL L + L Sbjct: 306 AQVQEHAVYLSAKSGDGINGLKQVIKDVVGYQPNEGQFL--ARRRHLQALDEAKNLLVTG 363 Query: 394 --SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L G +++AE+LRLA L +ITG + LL IFS FCIGK Sbjct: 364 QQQLAVHRAG-ELLAEDLRLAQQVLCEITGEFSSDDLLGRIFSSFCIGK 411 >gi|77968732|gb|ABB10112.1| tRNA modification GTPase trmE [Burkholderia sp. 383] Length = 489 Score = 239 bits (610), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 159/466 (34%), Positives = 247/466 (53%), Gaps = 35/466 (7%) Query: 4 EKETIFAVSTGALPSAISIIRLS-----GPSCFQVCEFICKKKKPFPRKASLRYFFGLDG 58 + + I A++T A I ++R+S + + + +C +K PR AS F G Sbjct: 30 DSDPIVAIATAAGRGGIGVVRVSFGRGGEAAALPLIDALCGQKLA-PRHASYVPFLDEHG 88 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEFSR 115 LD+G+ + FP+P S+TGE E HGG V+ +L+ + + LRLA PGEF+R Sbjct: 89 APLDRGIALYFPAPHSYTGEHVLELQGHGGPIVMQLLLQRCLDAGRGFGLRLAEPGEFTR 148 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF N K+DL +AE++ADLI + TE R + + G S +D + +R +EA Sbjct: 149 RAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRQIHALVDDVITLRMLVEAT 208 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 LDF EEE + + + + ++ ++ + + G ++R G +V+ G N GKSSL Sbjct: 209 LDFPEEE-IDFLEAADARGKLAKIRAQLAHVLGDARQGALLREGLSVVLAGQPNVGKSSL 267 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 NALA ++AIVT I GTTRD + + +EG + I DTAG+RET+D VE+ GI RT+ E Sbjct: 268 LNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRETEDEVERIGIARTWSE 327 Query: 296 VENADLILLLKEINSKKEIS---------FPKNIDFIFIGTKSDLYSTY------TEEYD 340 +E AD++L L ++S+ ++ FP + + + K+DL E D Sbjct: 328 IERADVVLHL--LDSRNGMTADDETIAARFPGGVPVVRVLNKTDLTGVAACVEHPAAEGD 385 Query: 341 ----HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS-- 394 HL S+ G+G++ L ++ I + + + +RHL L +L A+ Sbjct: 386 LTEVHL-SAKRGDGIDMLRAELLRIAGWQAGAEGVYL-ARERHLIALRAAQEHLAQAADH 443 Query: 395 LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++ LD+ AE LRLA L ITG + LL +IFS+FCIGK Sbjct: 444 AEQRAQSLDLFAEELRLAQEQLNAITGEFTSDDLLGVIFSRFCIGK 489 >gi|119503567|ref|ZP_01625650.1| tRNA modification GTPase [marine gamma proteobacterium HTCC2080] gi|119460629|gb|EAW41721.1| tRNA modification GTPase [marine gamma proteobacterium HTCC2080] Length = 437 Score = 239 bits (609), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 160/445 (35%), Positives = 237/445 (53%), Gaps = 19/445 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 ETI AV+T I I+RLSG ++ I ++ R A F R++D GL Sbjct: 2 ETIAAVATAPGRGGIGIVRLSGAKALEIALLITQRDSVDNRFAHYAKFTDRHDRVIDDGL 61 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 +I F P+SFTGED E HGG V+ +L+ ++ R ANPGEFS RAF NG+IDL Sbjct: 62 VIGFTGPQSFTGEDCVELQGHGGPVVIGLLLQRCLEL-GARHANPGEFSERAFLNGRIDL 120 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 ++AE++ADLI++++ R + +SG S+ Q + +T +R F+EA LDF EEE + Sbjct: 121 IQAEAIADLIAADSTTAARQAQASISGVFSTSINQIMRDITGLRVFVEAALDFPEEE-ID 179 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S V + + ++ I Q K G I++ G +V+ G N GKSSL NAL+ +D+A Sbjct: 180 FISEGNVDQQVDLILEHLARLIRQAKEGAILQGGATLVLAGKPNVGKSSLLNALSGEDIA 239 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTDI GTTRDVL + + G ++ DTAG+R ++D VE EG++R + AD++L + Sbjct: 240 IVTDIAGTTRDVLKQTVVICGVPFELIDTAGLRTSNDPVEIEGVRRAEAAISQADILLEV 299 Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH----LISSFTGEGLEELINKIKSI 361 + +S K++S I + K DL D +S TGEG++ L I Sbjct: 300 ID-DSSKDVSNSALTSGIKVVNKIDLTDRTPGPIDGGKAVAVSVHTGEGIDALKQLILET 358 Query: 362 LS------NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVS 415 L N+F + + + L++ V+ E ++AE+L+ Sbjct: 359 LGITEQTENRFSARERHLRALREGHTSLAEAVQRFLATRAGE------LLAEDLKKTHDI 412 Query: 416 LGKITGCVDVEQLLDIIFSKFCIGK 440 LG ITG + + LL IFS FCIGK Sbjct: 413 LGAITGKLTSDDLLGEIFSSFCIGK 437 >gi|307547060|ref|YP_003899539.1| tRNA modification GTPase TrmE [Halomonas elongata DSM 2581] gi|307219084|emb|CBV44354.1| tRNA modification GTPase TrmE [Halomonas elongata DSM 2581] Length = 456 Score = 239 bits (609), Expect = 9e-61, Method: Compositional matrix adjust. Identities = 158/458 (34%), Positives = 250/458 (54%), Gaps = 27/458 (5%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62 + ++TI A++T + IIR+SG + + E + P PR+A F G +G +LD Sbjct: 6 YAQDTIAALATPPGQGGVGIIRVSGSASRSIAESMLGHCPP-PRQAFYGPFRGENG-MLD 63 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 +G+ + F P SFTGED E HGG +++ +LE ++ RLA PGEFS RAF N K Sbjct: 64 EGIALFFEGPNSFTGEDVLELQGHGGTVIMDLLLEHCVQL-GARLARPGEFSERAFLNDK 122 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 +DL +AE++ADLI + + ++ + GE S + +L +R ++EA +DF EEE Sbjct: 123 LDLAQAEAIADLIEASSRGAAENALRSLQGEFSKRVEALVQELIELRMYVEAAIDFPEEE 182 Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 + + V + ++ ++ G ++R G +VI G NAGKSSL NAL ++ Sbjct: 183 -IDFLADGHVAGKLASIRARLADVRDSAGQGALMREGMSVVIAGRPNAGKSSLLNALTEQ 241 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 D AIVT+I GTTRDVL + L+G + + DTAG+R+T D VEK G+ R + E+E AD + Sbjct: 242 DTAIVTEIEGTTRDVLREHIHLDGMPLHVIDTAGLRDTPDAVEKIGVARAWSEIEKADRV 301 Query: 303 LLLKEINSKKEIS----FPKNIDFIFIGTKSDLYST---YTEEYDHL----------ISS 345 LL+ + + + +P+ + + ++ L ++E L +S+ Sbjct: 302 LLMVDATTTDALDPMSIWPEFVQRLADPSRLTLVRNKVDTSQEPPGLDLSTATPIVRLSA 361 Query: 346 FTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGL 402 TG+G++ L +K I+ + + FS + +RHL L + LE A L+ G Sbjct: 362 KTGQGVDNLKEHLKDIMGFSTTTEGRFS--ARRRHLDALDRAATALENGDAQLSGHGAG- 418 Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE+LR A +LG+ITG + LL IF FCIGK Sbjct: 419 ELLAEDLRDAQQALGEITGEFSADDLLGEIFGSFCIGK 456 >gi|262166779|ref|ZP_06034516.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio mimicus VM223] gi|262026495|gb|EEY45163.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio mimicus VM223] Length = 406 Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 147/402 (36%), Positives = 227/402 (56%), Gaps = 20/402 (4%) Query: 57 DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 +G+ LD+G+ + FP+P SFTGED E HGG V++ ++ + + +R A PGEFS R Sbjct: 7 NGQQLDQGIALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILHINGVRPARPGEFSER 66 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF N K+DL +AE++ADLI + +E + +++ + GE S ++ L H+R ++EA + Sbjct: 67 AFLNDKMDLTQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAI 126 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 DF EEE + + +V D+ + +++++ + G I+R G K+VI G NAGKSSL Sbjct: 127 DFPEEE-IDFLADGKVSADLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLL 185 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 NAL+ K+ AIVTDI GTTRDVL + ++G + I DTAG+R+ D VEK GI+R + E+ Sbjct: 186 NALSGKESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDAVEKIGIERAWEEI 245 Query: 297 ENADLILLL-----KEINSKKEI------SFPKNIDFIFIGTKSD-----LYSTYTEEYD 340 AD +L + E +EI P+NI I K+D L + + Sbjct: 246 RQADRVLFMVDGTTTEATDPQEIWPDFVDKLPENIGITVIRNKADQTGEPLGICHVNQPT 305 Query: 341 HL-ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EK 398 + +S+ TG+G++ L +K + + + +RHL L + +L++ E Sbjct: 306 LIRLSAKTGQGVDALRQHLKECMGFAGNQ-EGGFMARRRHLDALERAAEHLDIGQQQLEG 364 Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 DI+AE LR+A L +ITG + LL IFS FCIGK Sbjct: 365 YMAGDILAEELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 406 >gi|300857411|ref|YP_003782395.1| putative tRNA modification GTPase [Clostridium ljungdahlii DSM 13528] gi|300437526|gb|ADK17293.1| predicted tRNA modification GTPase [Clostridium ljungdahlii DSM 13528] Length = 460 Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 165/472 (34%), Positives = 279/472 (59%), Gaps = 44/472 (9%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--------KPFPRKASLRY 52 M E +TI AV+T ISIIR+SG ++ I K K KP+ S+RY Sbjct: 1 MMKEFDTIAAVATVLGEGGISIIRISGCDSLKIVNSIFKGKSNKNLIDMKPY----SMRY 56 Query: 53 FFGLD---GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLAN 109 + ++ G +LD+ L+ SP+S+T ED+ E + HGG+ +LEE+ K R+A Sbjct: 57 GYIVEKSTGELLDEVLVSFMKSPKSYTSEDTVEINCHGGVVATKKVLEEVIK-SGARIAE 115 Query: 110 PGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR 169 PGEF++RAF NG+IDL +AE++ D+I ++TE+ + +++ +G++S +KL + Sbjct: 116 PGEFTKRAFLNGRIDLSQAEAVIDIIRAKTELSMKSAVQQSTGKISKEINALREKLLEVI 175 Query: 170 SFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSN 229 + IEA +D+ EE D++ +S +V + + ++I+ +S + G+I+R+G VI+G N Sbjct: 176 AHIEATVDYPEE-DLEEMTSDKVSMRLQEILDEINHILSTAEEGKIVRDGLNTVIVGKPN 234 Query: 230 AGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGI 289 GKSSL N+L +++ AIVTD+PGTTRDV+ ++++G +K+ DTAGIRET+D+VEK G+ Sbjct: 235 VGKSSLLNSLIRENRAIVTDVPGTTRDVIEEYMNIDGIPIKVIDTAGIRETEDLVEKIGV 294 Query: 290 KRTFLEVENADLILLL----KEINSK-KEI-SFPKNIDFIFIGTKSDLYSTYT-EEYDHL 342 +R+ +++ ADL++L+ +E++ + KEI ++ K+ +I + K D+ ++ +L Sbjct: 295 ERSKQKIDEADLVILMLDSSEELDDEDKEIMNYVKDKKYIILLNKIDINDKINLDDICNL 354 Query: 343 ISSF-------TGEGLEELINKIKSILSNKFKK-------LPFSIPSHKRHLYHLSQTVR 388 SS TG+GL +KIK+ + + F K L + HK L ++ Sbjct: 355 DSSCIIKTSIKTGKGL----DKIKTCIKDLFFKGEVKPGDLFITNARHKEGLIRAKESC- 409 Query: 389 YLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +E + +D+ + ++R A +LGKITG E ++D IFS+FC+GK Sbjct: 410 -IEALGALKNTSAIDLASIDIRNAWDNLGKITGDTLEEDIIDKIFSQFCLGK 460 >gi|241767064|ref|ZP_04764843.1| tRNA modification GTPase TrmE [Acidovorax delafieldii 2AN] gi|241362387|gb|EER58354.1| tRNA modification GTPase TrmE [Acidovorax delafieldii 2AN] Length = 473 Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 158/476 (33%), Positives = 241/476 (50%), Gaps = 40/476 (8%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 + ++ I A++T A+ I+R+SG + +C + PR+A+ F G Sbjct: 2 LARHQDPIVAIATAPGRGAVGIVRVSGKGLTALVWALCGRALK-PREATYLPFRDARGEA 60 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAK-------------MPNLRL 107 +D+GL + FP P S+TGED E HGG V+ +L + + LR+ Sbjct: 61 IDQGLALYFPGPHSYTGEDVLELQAHGGPVVLQLLLARCLEAAAAPDAATGQPCLAGLRV 120 Query: 108 ANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTH 167 A PGEF+ RAF N KIDL +AE++ADLI + T R + ++G S+ D L H Sbjct: 121 AQPGEFTERAFLNDKIDLAQAEAIADLIDASTAAAARSASRSLTGAFSAEIHGLRDALIH 180 Query: 168 IRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227 +R +EA LDF EEE + + + L++ ++ + + + G ++R G K+VI G Sbjct: 181 LRMLVEATLDFPEEE-IDFLRKADARGQLSNLEHTLAKVMQRAQQGALLREGIKVVIAGQ 239 Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKE 287 NAGKSSL NALA ++AIVT I GTTRD + + +EG + + DTAG+R++ D VE+ Sbjct: 240 PNAGKSSLLNALAGAELAIVTPIAGTTRDKVQQTIQIEGVPLHVIDTAGLRDSVDEVERI 299 Query: 288 GIKRTFLEVENADLILLLKE---------------INSKKEISFPKNIDFIFIGTKSDLY 332 GI R + E+ AD +L L + I P + I + K D Sbjct: 300 GIARAWDEIAAADAVLFLHDLARWDCADYRAADAAIEGALADKLPTTVPVIDVWNKVDSV 359 Query: 333 STYT-----EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP-SHKRHLYHLSQT 386 S T + +S+ TG+GLE L + + + ++ P + + RH+ L Sbjct: 360 SAATVPGAPQRPSVALSARTGQGLEALRSVLLQVAG--WQSAPEGVYIARARHVQALQAV 417 Query: 387 VRYL--EMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +L A L+ + LD++AE LRLA +L ITG + LL +IFS FCIGK Sbjct: 418 QAHLAEAAAQLDARGPALDLLAEELRLAQNALNAITGEFSSDDLLGVIFSSFCIGK 473 >gi|190171262|gb|ACE63701.1| ThdF [Cronobacter dublinensis] gi|190171264|gb|ACE63702.1| ThdF [Cronobacter dublinensis] Length = 439 Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 155/437 (35%), Positives = 243/437 (55%), Gaps = 31/437 (7%) Query: 20 ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGED 79 + I+R+SG V + + K P R A F DG LD+G+ + FP P SFTGED Sbjct: 11 VGILRVSGQQARDVAQAVLGKL-PKSRYADYLPFKDADGTALDQGIALWFPGPNSFTGED 69 Query: 80 SAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET 139 E HGG +++ +L+ + +P +R+A PGEFS RAF N K+DL +AE++ADLI + + Sbjct: 70 VLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAEAIADLIDASS 129 Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LNDI 196 E R ++ + G S+ ++ LTH+R F+EA +DF +EE + S ++ LN++ Sbjct: 130 EQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEE-IDFLSDGKIEAQLNEV 188 Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 + D+ + ++ + G ++R G K+VI G NAGKSSL NALA ++ AIVTDI GTTRD Sbjct: 189 I---GDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRD 245 Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316 VL + ++G + I DTAG+RE D VE+ GI+R + E+E AD +L + + + + + Sbjct: 246 VLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVD-GTTTDATD 304 Query: 317 PKNI--DFI----------FIGTKSDLYSTY---TEEYDH---LISSFTGEGLEELINKI 358 P I DFI + K+D+ +E H +S+ T +G++ L + + Sbjct: 305 PAQIWPDFIARLPATLPITVVRNKADVTGEAPGISEVNGHSLVRLSARTSDGVDVLRSHL 364 Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSL 416 K + ++ + +RHL L +L+ A L G +++AE LRLA +L Sbjct: 365 KQSMGFD-TRMEGGFLARRRHLQALETAANHLQQGKAQLLGAWAG-ELLAEELRLAQQAL 422 Query: 417 GKITGCVDVEQLLDIIF 433 +ITG + LL IF Sbjct: 423 SEITGEFTSDDLLGRIF 439 >gi|190171346|gb|ACE63743.1| ThdF [Cronobacter turicensis] gi|190171348|gb|ACE63744.1| ThdF [Cronobacter turicensis] Length = 439 Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 155/437 (35%), Positives = 243/437 (55%), Gaps = 31/437 (7%) Query: 20 ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGED 79 + I+R+SG V + + K P R A F DG LD+G+ + FP P SFTGED Sbjct: 11 VGILRVSGQQARDVAQAVLGKL-PKARYADYLPFKDADGTALDQGIALWFPGPNSFTGED 69 Query: 80 SAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET 139 E HGG +++ +L+ + +P +R+A PGEFS RAF N K+DL +AE++ADLI + + Sbjct: 70 VLELQGHGGPVILDLLLKRILTIPGVRIAKPGEFSERAFLNDKLDLAQAEAIADLIDASS 129 Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LNDI 196 E R ++ + G S+ ++ LTH+R F+EA +DF +EE + S ++ LN++ Sbjct: 130 EQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEE-IDFLSDGKIEAQLNEV 188 Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 + D+ + ++ + G ++R G K+VI G NAGKSSL NALA ++ AIVTDI GTTRD Sbjct: 189 I---GDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRD 245 Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316 VL + ++G + I DTAG+RE D VE+ GI+R + E+E AD +L + + + + + Sbjct: 246 VLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVD-GTTTDATD 304 Query: 317 PKNI--DFI----------FIGTKSDLYSTY---TEEYDH---LISSFTGEGLEELINKI 358 P I DFI + K+D+ + +E H +S+ T +G++ L + + Sbjct: 305 PAQIWPDFIARLPAKLPITVVRNKADVTGEHPGLSEVNGHSLIRLSARTSDGVDVLRSHL 364 Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSL 416 K + + + +RHL L +L+ A L G +++AE LRLA +L Sbjct: 365 KQSMGFD-TSMEGGFLARRRHLQALEDAANHLQQGKAQLLGAWAG-ELLAEELRLAQQAL 422 Query: 417 GKITGCVDVEQLLDIIF 433 +ITG + LL IF Sbjct: 423 SEITGEFTSDDLLGRIF 439 >gi|307731534|ref|YP_003908758.1| tRNA modification GTPase TrmE [Burkholderia sp. CCGE1003] gi|307586069|gb|ADN59467.1| tRNA modification GTPase TrmE [Burkholderia sp. CCGE1003] Length = 464 Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 155/460 (33%), Positives = 244/460 (53%), Gaps = 27/460 (5%) Query: 6 ETIFAVSTGALPSAISIIRLS----GPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRIL 61 + I A++T I ++R+S G + Q + PR AS F G L Sbjct: 7 DPIVAIATAPGRGGIGVVRISFGRTGEAAAQPLMQALTGQPLAPRHASYVPFLDGSGNPL 66 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEFSRRAF 118 D+G+ + FP+P S+TGE E HGG V+ +L+ + + LRLA PGEF+RRAF Sbjct: 67 DRGIALYFPAPHSYTGEHVLELQGHGGPVVLQLVLQRCIDAGRAFGLRLAEPGEFTRRAF 126 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 N K+DL +AE++ADLI + TE R + + G S ++++ +R +EA LDF Sbjct: 127 LNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRDIHTLVEEVITLRMLVEATLDF 186 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 EEE + + + + ++ ++S +++ + G ++R G +V+ G N GKSSL NA Sbjct: 187 PEEE-IDFLEAADARGKLARIRERLASVLAEARQGALLREGLSVVLAGQPNVGKSSLLNA 245 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 LA ++AIVT I GTTRD + + +EG + + DTAG+R+T+D VEK GI RT+ E+E Sbjct: 246 LAGAELAIVTPIAGTTRDKVAQTIQIEGIPLHVIDTAGLRDTEDEVEKIGIARTWSEIER 305 Query: 299 ADLILLLKE----INSKKEI---SFPKNIDFIFIGTKSDLYS--TYTEEYD-------HL 342 AD++L L + + ++ E FP + + + K+DL T D Sbjct: 306 ADVVLHLLDARTGMTAEDETIAKRFPAGVPVVRVLNKTDLVGLPPQTRALDVDLDLSEVR 365 Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LNEKDC 400 +S+ G+G+ L +++ I + + + +RHL L +L A+ ++ Sbjct: 366 LSAKQGDGVSLLRDELLRIAGWQAGAESVYL-ARERHLIALRAAQEHLATAAAHADQNSQ 424 Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LD+ AE LRLA L ITG + LL +IFS+FCIGK Sbjct: 425 ALDLFAEELRLAQDQLNSITGEFSSDDLLGVIFSRFCIGK 464 >gi|190171266|gb|ACE63703.1| ThdF [Cronobacter dublinensis] Length = 439 Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 151/436 (34%), Positives = 238/436 (54%), Gaps = 29/436 (6%) Query: 20 ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGED 79 + I+R+SG V + + K P R A F DG LD+G+ + FP P SFTGED Sbjct: 11 VGILRVSGQQARDVAQAVLGKL-PKARYADYLPFKDADGTALDQGIALWFPGPNSFTGED 69 Query: 80 SAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET 139 E HGG +++ +L+ + +P +R+A PGEFS RAF N K+DL +AE++ADLI + + Sbjct: 70 VLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAEAIADLIDASS 129 Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LNDI 196 E R ++ + G S+ ++ LTH+R F+EA +DF +EE + S ++ LN++ Sbjct: 130 EQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEE-IDFLSDGKIEAQLNEV 188 Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 + D+ + ++ + G ++R G K+VI G NAGKSSL NALA ++ AIVTDI GTTRD Sbjct: 189 I---GDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRD 245 Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS- 315 VL + ++G + I DTAG+RE D VE+ GI+R + E+E AD +L + + + Sbjct: 246 VLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTNATDP 305 Query: 316 ----------FPKNIDFIFIGTKSDLYSTY---TEEYDH---LISSFTGEGLEELINKIK 359 P + + K+D+ +E H +S+ T +G++ L + +K Sbjct: 306 AQIWPDFIARLPATLPITVVRNKADVTGEAPGISEVNGHSLVRLSARTSDGVDVLRSHLK 365 Query: 360 SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSLG 417 + ++ + +RHL L +L+ A L G +++AE LRLA +L Sbjct: 366 QSMGFD-TRMEGGFLARRRHLQALETAANHLQQGKAQLLGAWAG-ELLAEELRLAQQALS 423 Query: 418 KITGCVDVEQLLDIIF 433 +ITG + LL IF Sbjct: 424 EITGEFTSDDLLGRIF 439 >gi|302880137|ref|YP_003848701.1| tRNA modification GTPase TrmE [Gallionella capsiferriformans ES-2] gi|302582926|gb|ADL56937.1| tRNA modification GTPase TrmE [Gallionella capsiferriformans ES-2] Length = 442 Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 158/435 (36%), Positives = 247/435 (56%), Gaps = 22/435 (5%) Query: 18 SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77 + ++R+SG + E I + P R A+ F G ++D+G+ + FP+P S+TG Sbjct: 18 GGVGVVRISGSGLGSIAEAILGRL-PVARHATYTDFKDETGEVIDQGIALYFPAPHSYTG 76 Query: 78 EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137 ED E HGG AV++ +L+ + +RLA GEF+RRAF N KIDL +AES+ADLI + Sbjct: 77 EDVLELQGHGGAAVLHLLLQRCLGL-GVRLAEAGEFTRRAFLNDKIDLAQAESVADLIEA 135 Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE-DVQNFSSKEVLNDI 196 T R +M + G+ S+ +++LT +R +EA LDF EE+ +V + S ++ L + Sbjct: 136 TTTEAARSAMRSLHGDFSAAINGLVEELTLLRMLVEAMLDFPEEDIEVVDTSHRDRL--L 193 Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 +K ++ ++ K G ++R G I ++G N GKSSL N LA ++VA+V+D+PGTTRD Sbjct: 194 EKIKTKLAQTLATAKQGSLLREGAHIALVGRPNVGKSSLLNRLAGEEVALVSDVPGTTRD 253 Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKE 313 V+ + + G + I DTAG+RE+ D VE G+ RT V ADLIL+L + S+ + Sbjct: 254 VIRQAIQIRGVPLHIMDTAGLRESGDEVENMGMARTHQTVGRADLILMLLDAAQGCSEGD 313 Query: 314 IS----FPKNIDFIFIGTKSD-LYSTYTEEYDHLISSFTGEGLEELINKI-KSILSNKFK 367 ++ FP I + + K+D L + + IS+ +G G++ L +I K I + + Sbjct: 314 LAIIAGFPVEIPRLQVYNKADLLQGALSNDAGIYISAKSGLGIDTLREQILKQIGWHNQE 373 Query: 368 KLPFSIPSHKRHLYHLSQTVRYLEMAS--LNEKDCGLDIIAENLRLASVSLGKITGCVDV 425 F + +RHL L+Q +L+ A L+ ++ AE LRL +L ITG Sbjct: 374 GGTFI--ARERHLIALNQANIHLQQAEQLLDHP----ELFAEELRLTQQALSSITGKFSA 427 Query: 426 EQLLDIIFSKFCIGK 440 + LL IFS+FCIGK Sbjct: 428 DDLLGEIFSRFCIGK 442 >gi|291296117|ref|YP_003507515.1| tRNA modification GTPase TrmE [Meiothermus ruber DSM 1279] gi|290471076|gb|ADD28495.1| tRNA modification GTPase TrmE [Meiothermus ruber DSM 1279] Length = 437 Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 158/445 (35%), Positives = 246/445 (55%), Gaps = 25/445 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DGRI 60 + I A++T A+ IIR+SG ++ + K K P + A R+ G G + Sbjct: 8 DVIAAIATPPGKGAVGIIRVSGEGALELVSRLWKGKNPS-KLAGGRFTHGQICDPHTGEV 66 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+ LL+VF P S+TG+DSAE H HG AV+ +L+ L ++ R A PGEF+ RA+ N Sbjct: 67 LDEALLLVFRQPHSYTGQDSAELHTHGSPAVLRRVLQALFEL-GARPAQPGEFTLRAYLN 125 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSS----LYGQWIDKLTHIRSFIEADL 176 GK+DL +AES+ LI +E++ RR ++ G+S LS L Q D L HI+++ L Sbjct: 126 GKMDLAQAESVLSLIEAESDAARRQALRGLSAGLSQKISYLSEQLFDLLAHIQAW----L 181 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D+ EE V+ + L +L +I+ ++ G I + G +I ++G NAGKSSL Sbjct: 182 DYPEE-GVEPAQIQAGLEPVL---QEITHLLATAPAGRIAQKGARIALVGAPNAGKSSLL 237 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 NAL + AIVT IPGTTRD L L++ G + DTAG+RETDD++EK G++R Sbjct: 238 NALLGYERAIVTPIPGTTRDYLEAPLEIAGVPIVAVDTAGVRETDDVIEKSGVERALAIA 297 Query: 297 ENADLILLLKEINSKKEISFPKNIDFIF-IGTKSDLYSTYTEEYDHLISSFTGEGLEELI 355 + ADL+L L + + + P + + TK+DL +++ +SS TG GL EL Sbjct: 298 QEADLVLYLADQSQPRPTPPPLPWERTLKVATKADLAPAWSDAAYLRVSSQTGLGLPELR 357 Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVS 415 +I L + + + S++RH+ L + +L+ A L + D+ A ++ A + Sbjct: 358 QQIHHRLLGQAPEGELWV-SNERHVEALRRAQGHLQEA-LQAPE---DLAALSIEQALEA 412 Query: 416 LGKITGCVDVEQLLDIIFSKFCIGK 440 L +I G E+++D +F FC+GK Sbjct: 413 LAEILGKDVSEEVIDRVFRNFCVGK 437 >gi|313675601|ref|YP_004053597.1| tRNA modification GTPase trme [Marivirga tractuosa DSM 4126] gi|312942299|gb|ADR21489.1| tRNA modification GTPase trmE [Marivirga tractuosa DSM 4126] Length = 457 Score = 238 bits (607), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 170/465 (36%), Positives = 266/465 (57%), Gaps = 34/465 (7%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---D 57 ++ KETI A+ST AI++IRLSG + + K K +K+ +F + + Sbjct: 2 LDQLKETIIALSTAPGVGAIAVIRLSGEDAITITNSVFKGKNLLQQKSHTAHFGTIRNDE 61 Query: 58 GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 G I+D+ + +F +P SFT E+ E HG +V +++ L +RLA GEF++RA Sbjct: 62 GEIIDEVVATLFIAPHSFTKENVVEISCHGSPYIVQRLIK-LFLTKGVRLAKAGEFTQRA 120 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NG+ DL +AE++ADLI+++TE + ++ M G S Q +L H S IE +LD Sbjct: 121 FLNGQFDLAQAEAVADLINADTEASHKAALNQMRGGFSEQIKQLRAELIHFASMIELELD 180 Query: 178 FSEEEDVQNFSS----KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233 F EE DV+ F+ K+++N +L + I++ +S LG +I+NG VI G N GKS Sbjct: 181 FGEE-DVE-FADRDDLKKLVNQLLSV---ITALVSSFDLGNVIKNGVPTVIAGKPNTGKS 235 Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293 +L NAL ++ AIV+DI GTTRD + +++LEG + + DTAG+R+T+D VE G++RT Sbjct: 236 TLLNALLNEEKAIVSDIAGTTRDFIEDEINLEGVVFRFIDTAGLRDTEDKVEAIGVQRTK 295 Query: 294 LEVENADLILL--------LKEINSKKEISFPKN--IDFIFIGTK-----SDLYSTYTEE 338 +++ A LI+ L E+N ++I+ +N I FI +G K DLY+ ++ Sbjct: 296 DKMKQASLIVYMFDLKNDTLTEVN--RDINMLENLGIPFIKVGNKLDEAQQDLYNEMKKD 353 Query: 339 YDHL-ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASL 395 + L IS+ EGLE L K+ ++ K ++ ++ RH +L QT L + L Sbjct: 354 KNTLFISAINKEGLEALKTKLVETVNLDNFKTGDTVVTNIRHYDNLVQTQNSLNAVLRGL 413 Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++ G D +A ++R A LG+ITG + + LL IFSKFCIGK Sbjct: 414 DDNITG-DFLALDIRHALRFLGEITGEITTDDLLANIFSKFCIGK 457 >gi|295678212|ref|YP_003606736.1| tRNA modification GTPase TrmE [Burkholderia sp. CCGE1002] gi|295438055|gb|ADG17225.1| tRNA modification GTPase TrmE [Burkholderia sp. CCGE1002] Length = 464 Score = 238 bits (607), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 153/465 (32%), Positives = 245/465 (52%), Gaps = 27/465 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLS----GPSCFQVCEFICKKKKPFPRKASLRYFFGL 56 + + + I A++T I ++R+S G + Q + R AS F Sbjct: 2 LTTDSDPIVAIATAPGRGGIGVVRISFGRAGAAAAQPLMQALTGQTLTARHASYVPFLDA 61 Query: 57 DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEF 113 G LD+G+ + FP+P S+TGE E HGG V+ +L+ + + LRLA PGEF Sbjct: 62 SGNPLDRGIALYFPAPHSYTGEHVLELQGHGGPVVLQLVLQRCIDAGRAFGLRLAEPGEF 121 Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173 +RRAF N K+DL +AE++ADLI + TE R + + G S ++++ +R +E Sbjct: 122 TRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRDIHALVEEVITLRMLVE 181 Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233 A LDF EEE + + + + ++ ++ +S+ + G ++R G +V+ G N GKS Sbjct: 182 ATLDFPEEE-IDFLEAADARGKLARIRERLAHVLSEARQGALLREGLSVVLAGQPNVGKS 240 Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293 SL NALA ++AIVT I GTTRD + + +EG + + DTAG+R+T+D VEK GI+RT+ Sbjct: 241 SLLNALAGAELAIVTPIAGTTRDKVAQTIQIEGIPLHVIDTAGLRDTEDEVEKIGIERTW 300 Query: 294 LEVENADLILLLKEINSKKEIS-------FPKNIDFIFIGTKSDL--YSTYTEEYDH--- 341 E+E AD++L L + + FP+ + + + K+DL + T+ D Sbjct: 301 GEIERADVVLHLLDARAGMTTDDETIAGRFPRGVPVVRVLNKTDLTGLAPATQALDADLE 360 Query: 342 ----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN- 396 +S+ G+G+ L +++ I + + + +RHL L +L A+ + Sbjct: 361 LSEVRLSAKQGDGVALLRDELLRIAGWQAGAESVYL-ARERHLIALRAADEHLATAAAHA 419 Query: 397 -EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + LD+ AE LRLA L ITG + LL +IFS+FCIGK Sbjct: 420 EQNAQALDLFAEELRLAQDQLNSITGEFSSDDLLGVIFSRFCIGK 464 >gi|186477840|ref|YP_001859310.1| tRNA modification GTPase TrmE [Burkholderia phymatum STM815] gi|184194299|gb|ACC72264.1| tRNA modification GTPase TrmE [Burkholderia phymatum STM815] Length = 466 Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 155/464 (33%), Positives = 244/464 (52%), Gaps = 29/464 (6%) Query: 4 EKETIFAVSTGALPSAISIIRLS----GPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR 59 + + I A++T I ++R+S G + Q + PR AS F G Sbjct: 5 DSDPIVAIATAPGRGGIGVVRISLGRAGEAAAQPMMQALSGQTWTPRHASYVPFLDGGGN 64 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEFSRR 116 LD+G+ + FP+P S+TGE E HGG V+ +L+ + + LRLA PGEF+RR Sbjct: 65 ALDRGIALYFPAPHSYTGEHVLELQGHGGPIVLQLVLQRCIDAGQAFGLRLAEPGEFTRR 124 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF N K+DL +AE++ADLI + TE R + + G S ++ + +R +EA L Sbjct: 125 AFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLEGAFSRDIHALVEDVITLRMLVEATL 184 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 DF EEE + + + + ++ ++ +S+ + G ++R G +V+ G N GKSSL Sbjct: 185 DFPEEE-IDFLEAADARGKLARIRERLALVLSEARQGALLREGLSVVLAGQPNVGKSSLL 243 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 NALA ++AIVT I GTTRD + + +EG + + DTAG+RET+D VEK GI+RT+ E+ Sbjct: 244 NALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHVIDTAGLRETEDEVEKIGIERTWGEI 303 Query: 297 ENADLILLLKEINSKK-------EISFPKNIDFIFIGTKSDL--YSTYTEEYDH------ 341 E AD++L L + S FP + + + K+DL + + E+ + Sbjct: 304 ERADVVLHLLDARSGMTDDDEAIAARFPAGVPVVRVLNKTDLTGAAPHVEKLNASGEPDL 363 Query: 342 ---LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LN 396 +S+ G+G+ L ++ I + + + +RHL L +L +A+ + Sbjct: 364 CEVRLSAKMGDGISLLRGELLRIAGWQAGAESVYL-ARERHLIALRAAQNHLGLAAEHAD 422 Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + LD+ AE LRLA L ITG + LL +IFS+FCIGK Sbjct: 423 QNAQALDLFAEELRLAQDQLNSITGEFTSDDLLGVIFSRFCIGK 466 >gi|326797440|ref|YP_004315260.1| tRNA modification GTPase mnmE [Marinomonas mediterranea MMB-1] gi|326548204|gb|ADZ93424.1| tRNA modification GTPase mnmE [Marinomonas mediterranea MMB-1] Length = 459 Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 161/457 (35%), Positives = 252/457 (55%), Gaps = 26/457 (5%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63 +++TI A +T + IIRLSGP + + I P PR A F + LD Sbjct: 9 DQDTIAAQATAPGRGGVGIIRLSGPKSLDIAKAIIGFD-PKPRYAHYVPFKDDNDEQLDM 67 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 G+ + FP P SFTGED E HGG +++ ++ + RLA PGEFS RAF N K+ Sbjct: 68 GIALYFPGPNSFTGEDVFELQGHGGPVILDMLMTRCTAL-GARLARPGEFSERAFLNDKM 126 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL +AE++ADLI S +E + ++ + G S + ++ L H+R ++EA +DF EEE Sbjct: 127 DLTQAEAIADLIDSSSEQAAKCALRSLQGAFSKRVTELVEALIHLRIYVEAAIDFPEEE- 185 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 + +V ++ ++ +++ + + G ++R G +VI G NAGKSSL N L+ KD Sbjct: 186 IDFIGDGKVAAELEGIQIKLNAVLKEANQGALLREGMNVVIAGRPNAGKSSLLNTLSGKD 245 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303 AIVT+I GTTRDVL + L+G + I DTAG+R++ D VE+ GI+R + E+ AD IL Sbjct: 246 SAIVTNIAGTTRDVLREHIHLDGMPLHIIDTAGLRDSPDEVEQIGIQRAWDEIHKADRIL 305 Query: 304 LL---KEINSK--KEI------SFPKNIDFIFIGTKSDLY--STYTEEYDHL----ISSF 346 L+ + + SK +EI P + K DL +T E + L +S+ Sbjct: 306 LMVDSQTVGSKDPEEIWPEFVAQLPSRDKLTLVRNKVDLTKETTGLESINDLPILSLSAK 365 Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL---D 403 TG+G++ L +K+++ + I + +RH+ L++T +L S +E+ G + Sbjct: 366 TGQGIDALSQHLKAVMGFESTTEGGFI-ARRRHIEALNKTNDFLR--SGHEQLHGFGAGE 422 Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++AE+L+ A +L +ITG + LL IF FCIGK Sbjct: 423 LLAEDLKEAQQALSEITGEFTSDDLLGRIFGSFCIGK 459 >gi|187735151|ref|YP_001877263.1| tRNA modification GTPase TrmE [Akkermansia muciniphila ATCC BAA-835] gi|226704777|sp|B2UPK5|MNME_AKKM8 RecName: Full=tRNA modification GTPase mnmE gi|187425203|gb|ACD04482.1| tRNA modification GTPase TrmE [Akkermansia muciniphila ATCC BAA-835] Length = 449 Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 150/451 (33%), Positives = 246/451 (54%), Gaps = 13/451 (2%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQV---CEFICKKKKPFPRKASLRYFFGLD 57 M + TI A +T A AI++IR+SGP C + C ++ PR+A+L + Sbjct: 1 MTDPERTIAAQATAAGQGAIAVIRMSGPGCMDILKQCTPAAFTERLRPRRATLVCIRDAE 60 Query: 58 GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 G +D+ L+ FP+P S+TGED+AE HGG+ V + +L+ L + A PGEF++RA Sbjct: 61 GAAIDQALVTWFPAPASYTGEDTAEISCHGGMLVTDRLLKRLYQC-GASPAEPGEFTKRA 119 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NG++DL +AE++ D+IS+ +++ + + + G + + + D L H+ + IEA +D Sbjct: 120 FLNGRMDLTQAEAVMDVISAGSDLALKAAQSQLDGGIGAQVDELKDNLVHVLAHIEAYID 179 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 F +E D+ ++ ++L + ++ + + + + G ++R G + I G N GKSSL N Sbjct: 180 FPDE-DISPDTASDLLARLRNMEEKLDTLLKTAEGGRLLREGIRTAIAGPPNVGKSSLLN 238 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 L D AIV++I GTTRD + + L G +++ DTAG+RE+ D++E+ GI RT +E Sbjct: 239 TLLGYDRAIVSNIAGTTRDTVEESIQLAGLALRLIDTAGVRESSDVIEQAGITRTNRALE 298 Query: 298 NADLILLLKEINSKKEISFPKNI---DFIFIGTKSDL--YSTYTEEYDHLISSFTGEGLE 352 ADL+L + + ++ + FP + + I K DL + + S TGEG + Sbjct: 299 TADLVLEVADASTPRVKDFPAPVLTAPRLLILNKCDLGIHPDWKAVPGIRFSCATGEGRK 358 Query: 353 ELINKIKSILSNKFKKLPFS--IPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAENL 409 EL I S+ S + + RH + L ++ +AS + + + A L Sbjct: 359 ELEEAIIQAFSSSLPGETGSSLVAINARHQHELGLCREHVRLASESISRQESPEFTALEL 418 Query: 410 RLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 R A LG+ITG VD E +L IFS FC+GK Sbjct: 419 REALTHLGEITGAVDTEDVLGAIFSSFCLGK 449 >gi|159899958|ref|YP_001546205.1| tRNA modification GTPase TrmE [Herpetosiphon aurantiacus ATCC 23779] gi|159892997|gb|ABX06077.1| tRNA modification GTPase TrmE [Herpetosiphon aurantiacus ATCC 23779] Length = 454 Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 170/462 (36%), Positives = 253/462 (54%), Gaps = 39/462 (8%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGLD--GRILD 62 +TI A++T + IIR+SGP + + + K ++K R +RY LD G+I+D Sbjct: 5 DTIAALATPPGVGGVGIIRVSGPQSLAIAQALIKPRRKGVWRSYQMRYGHVLDEHGQIVD 64 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 + L + F P SFTGED E H HGG + L LA RLANPGEFS RAF NG+ Sbjct: 65 EVLAVFFKGPRSFTGEDILEIHCHGGPLPLRRTLT-LALAHGARLANPGEFSLRAFANGR 123 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 IDL++AE+ D+I ++T + L+++ + G LS ++L + +++ A DF E+ Sbjct: 124 IDLVQAEATLDVIEAQTNLGLSLALDQLGGGLSRDLRTLREQLMYPLAYVTALTDFPED- 182 Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 + S+E+ + ++ +S ++ G ++R G + ++G NAGKSSL NAL + Sbjct: 183 ---DVPSEELQQPLQQAQSLLSQLLAGADQGVVVREGARAALVGRPNAGKSSLMNALLRT 239 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 + AIVT IPGTTRD L +L G V + DTAGI ETDD+VE+ G++R+ + ADL+ Sbjct: 240 ERAIVTAIPGTTRDTLEETANLGGIPVVLIDTAGITETDDVVERIGVERSRAALSKADLV 299 Query: 303 LLLKEINSKKEISFPKNIDF---------IFIGTKSDL-----YSTYTEEYDHL-----I 343 LLL I+ + +S P+++ I I TK+DL + T+ + L I Sbjct: 300 LLL--IDGSQPLS-PEDLAIAQLTHERPTIVIATKADLGQHADLTALTQTHPKLRGSIAI 356 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFS---IPSHKRHLYHLSQTVRYLEMA--SLNEK 398 SS G GL+ L + L LP S + ++ RH L + LE A L E Sbjct: 357 SSQAGTGLDYLGTMVAEQL---LGGLPLSDARLVTNPRHREALRRANAALEQAIQGLREG 413 Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D+IA +L A SLG+ITG LL++IFS+FCIGK Sbjct: 414 RP-VDLIAIDLHEAIASLGEITGETVEHDLLNMIFSRFCIGK 454 >gi|289662289|ref|ZP_06483870.1| tRNA modification GTPase TrmE [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 446 Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 153/450 (34%), Positives = 247/450 (54%), Gaps = 14/450 (3%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+ TI A+++ A + I+RLSGP Q+ + + PR A F G + Sbjct: 1 MSSSSSTIVAIASAAGIGGVGIVRLSGPQSVQIAAQLGIARLQ-PRHAHYARFRDAQGAV 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D G+ + F +P SFTGED E HG ++ ++ ++ R A GEFS RAF N Sbjct: 60 VDDGIALWFNAPHSFTGEDVVELQGHGSPVLLRQLVARCIEL-GARQARAGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GK+DL +AE++ADLI++ R + + G S D LT +R +EA +DF++ Sbjct: 119 GKLDLAQAEAIADLIAAGDLRAARAARRALDGVFSRRVDAVADTLTRLRIHVEAAIDFAD 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E + +V + + + ++ + + G +R+G V++G NAGKSSL NALA Sbjct: 179 EP-LDTLGGNQVRDGLTQARTLLAQLLRDAERGRKLRDGLHAVLIGPPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 D AIVTD+ GTTRD L + L+G+ + + DTAG+RE D +E+EG++R E+E AD Sbjct: 238 GSDRAIVTDVAGTTRDTLHEAIQLDGFELTLVDTAGLREGGDAIEREGMRRARAELERAD 297 Query: 301 LILLL---KEINSKKEISFPKNIDFI----FIGTKSDLYSTYT--EEYDHLISSFTGEGL 351 L L++ ++ + +E + ID + +I K DL S + ++S+ TG+GL Sbjct: 298 LALVVLDARDPQAARE-AIGDAIDAVPRQLWIHNKCDLLSDAVPLDANAIVVSAVTGQGL 356 Query: 352 EELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLR 410 E+L +++ + L + + + + RH+ L + +++++A L L++ AE LR Sbjct: 357 EQLHIRLRELALGDGVESVDGEFSARTRHVEALRRAEQHVDIADLELGFEQLELAAEELR 416 Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LA +LG+ITG + + LL IFS FCIGK Sbjct: 417 LAHEALGEITGKISADDLLGKIFSSFCIGK 446 >gi|190171290|gb|ACE63715.1| ThdF [Cronobacter muytjensii] Length = 439 Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 155/437 (35%), Positives = 242/437 (55%), Gaps = 31/437 (7%) Query: 20 ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGED 79 + I+R+SG V + + K P R A F DG LD+G+ + FP P SFTGED Sbjct: 11 VGILRVSGQQARDVAQAVLGKL-PKARYADYLPFKDADGTALDQGIALWFPGPNSFTGED 69 Query: 80 SAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET 139 E HGG +++ +L+ + +P +R+A PGEFS RAF N K+DL +AE++ADLI + + Sbjct: 70 VLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAEAIADLIDASS 129 Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LNDI 196 E R ++ + G S+ ++ LTH+R F+EA +DF +EE + S ++ LN++ Sbjct: 130 EQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEE-IDFLSDGKIEAQLNEV 188 Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 + D+ + ++ + G ++R G K+VI G NAGKSSL NALA ++ AIVTDI GTTRD Sbjct: 189 I---GDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRD 245 Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316 VL + ++G + I DTAG+RE D VE+ GI+R + E+E AD +L + + + + + Sbjct: 246 VLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVD-GTTTDATD 304 Query: 317 PKNI--DFI----------FIGTKSDLYSTY---TEEYDH---LISSFTGEGLEELINKI 358 P I DFI + K+D+ +E H +S+ T +G++ L + + Sbjct: 305 PAQIWPDFIARLPATLPITVVRNKADVTGELPGISEVNGHSLVRLSARTSDGVDVLRSHL 364 Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSL 416 K + + + +RHL L +L+ A L G +++AE LRLA +L Sbjct: 365 KQSMGFD-TSMEGGFLARRRHLQALETAANHLQQGKAQLLGAWAG-ELLAEELRLAQQAL 422 Query: 417 GKITGCVDVEQLLDIIF 433 +ITG + LL IF Sbjct: 423 SEITGEFTSDDLLGRIF 439 >gi|329908683|ref|ZP_08274923.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Oxalobacteraceae bacterium IMCC9480] gi|327546633|gb|EGF31597.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Oxalobacteraceae bacterium IMCC9480] Length = 433 Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 157/437 (35%), Positives = 235/437 (53%), Gaps = 28/437 (6%) Query: 27 GPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVH 86 G ++C + K R+A+ F DG +D+GL + F +P S+TGED E H Sbjct: 2 GNIAAEICAMLPGKTLQ-ARRATYTRFVDADGSTIDQGLALYFKAPHSYTGEDVLELQGH 60 Query: 87 GGIAVVNGILEELAKMP---NLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQR 143 GG V+ +L + +LRLA PGEF++RAF N K+DL +AE++ADLI + TE Sbjct: 61 GGPVVMQLLLARCLQAGSHIDLRLAQPGEFTQRAFLNDKLDLAQAEAVADLIDASTEAAA 120 Query: 144 RLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDI 203 R + + +SG S + ++++TH+R +EA LDF EEE + + + +++ + Sbjct: 121 RSASQSLSGVFSGIIRTLVEQVTHLRMLVEATLDFPEEE-IDFLEKSDARGKLAAIRDTL 179 Query: 204 SSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD 263 Q G ++R+G IV+ G N GKSSL NALA D+AIVT I GTTRD +T + Sbjct: 180 QKVFRQSAQGALLRDGLNIVLAGQPNVGKSSLLNALAGADIAIVTPIAGTTRDKVTETIQ 239 Query: 264 LEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS----- 315 +EG + I DTAGIR E D VE+ GI+RT+ V AD+I+ L + ++ Sbjct: 240 IEGIPLNIIDTAGIRYDAEAIDDVERIGIERTWAAVAQADVIIHLLDACRGPTLADESIV 299 Query: 316 --FPKNIDFIFIGTKSDLYSTYTEEYDHLISSF-----TGEGLEELINKIKSILSNKFKK 368 FP NI + + K DL S + D L+ + + L + + + + +++ Sbjct: 300 ARFPANIPVMRVWNKIDL-SGHKPAIDRLVDATHIYLSATDQLGMELLREELLRLAGWQQ 358 Query: 369 LPFSIP-SHKRHLYHLSQTVRYL----EMASLNEKDCGLDIIAENLRLASVSLGKITGCV 423 S+ + +RHL L+ +L E A+LN D LD+ AE LRLA L ITG Sbjct: 359 TGESLYLARERHLVALAAAQTHLQFAAEHAALN--DHALDLFAEELRLAQEQLSSITGAF 416 Query: 424 DVEQLLDIIFSKFCIGK 440 + LL +IFS+FCIGK Sbjct: 417 TSDDLLGVIFSRFCIGK 433 >gi|190171286|gb|ACE63713.1| ThdF [Cronobacter muytjensii] gi|190171288|gb|ACE63714.1| ThdF [Cronobacter muytjensii] gi|190171292|gb|ACE63716.1| ThdF [Cronobacter muytjensii] gi|190171294|gb|ACE63717.1| ThdF [Cronobacter muytjensii] Length = 439 Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 155/437 (35%), Positives = 242/437 (55%), Gaps = 31/437 (7%) Query: 20 ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGED 79 + I+R+SG V + + K P R A F DG LD+G+ + FP P SFTGED Sbjct: 11 VGILRVSGQQARDVAQAVLGKL-PKARYADYLPFKDADGTALDQGIALWFPGPNSFTGED 69 Query: 80 SAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET 139 E HGG +++ +L+ + +P +R+A PGEFS RAF N K+DL +AE++ADLI + + Sbjct: 70 VLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAEAIADLIDASS 129 Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LNDI 196 E R ++ + G S+ ++ LTH+R F+EA +DF +EE + S ++ LN++ Sbjct: 130 EQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEE-IDFLSDGKIEAQLNEV 188 Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 + D+ + ++ + G ++R G K+VI G NAGKSSL NALA ++ AIVTDI GTTRD Sbjct: 189 I---GDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRD 245 Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316 VL + ++G + I DTAG+RE D VE+ GI+R + E+E AD +L + + + + + Sbjct: 246 VLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVD-GTTTDATD 304 Query: 317 PKNI--DFI----------FIGTKSDLYSTY---TEEYDH---LISSFTGEGLEELINKI 358 P I DFI + K+D+ +E H +S+ T +G++ L + + Sbjct: 305 PAQIWPDFIARLPATLPITVVRNKADVTGELPGISEVNGHSLVRLSARTSDGVDVLRSHL 364 Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSL 416 K + + + +RHL L +L+ A L G +++AE LRLA +L Sbjct: 365 KQSMGFD-TSMEGGFLARRRHLQALETAANHLQQGKAQLLGAWAG-ELLAEELRLAQQAL 422 Query: 417 GKITGCVDVEQLLDIIF 433 +ITG + LL IF Sbjct: 423 SEITGEFTSDDLLGRIF 439 >gi|170697748|ref|ZP_02888835.1| tRNA modification GTPase TrmE [Burkholderia ambifaria IOP40-10] gi|170137363|gb|EDT05604.1| tRNA modification GTPase TrmE [Burkholderia ambifaria IOP40-10] Length = 464 Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 157/464 (33%), Positives = 246/464 (53%), Gaps = 31/464 (6%) Query: 4 EKETIFAVSTGALPSAISIIRLS-----GPSCFQVCEFICKKKKPFPRKASLRYFFGLDG 58 + + I A++T A I ++R+S + + + +C ++ PR AS F G Sbjct: 5 DSDPIVAIATAAGRGGIGVVRVSFGRGGEAAALPLIDALCGQRLT-PRHASYVPFVDEHG 63 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEFSR 115 LD+G+ + FP+P S+TGE E HGG V+ +L+ + + LRLA PGEF+R Sbjct: 64 APLDRGIALYFPAPHSYTGEHVLELQGHGGPIVMQLLLQRCLDAGRGFGLRLAQPGEFTR 123 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF N K+DL +AE++ADLI + TE R + + G S ++ + +R +EA Sbjct: 124 RAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRQIHALVEDVITLRMLVEAT 183 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 LDF EEE + + + + ++ ++ + + G ++R G +V+ G N GKSSL Sbjct: 184 LDFPEEE-IDFLEAADARGKLAKIREQLAQVLGDARQGALLREGLSVVLAGQPNVGKSSL 242 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 NALA ++AIVT I GTTRD + + +EG + I DTAG+RET+D VE+ GI RT+ E Sbjct: 243 LNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRETEDEVERIGIARTWSE 302 Query: 296 VENADLILLLKE----INSKKEI---SFPKNIDFIFIGTKSDLYST------YTEEYD-- 340 +E AD++L L + + + E+ FP + + + K+DL E D Sbjct: 303 IERADVVLHLLDSRTGMTADDEVIAARFPGGVPVVRVLNKTDLTGVPACVEHPAAEGDLT 362 Query: 341 --HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LN 396 HL S+ G+G++ L ++ I + + + +RHL L +L A+ Sbjct: 363 EVHL-SAKRGDGIDMLRTELLRIAGWQAGAEGVYL-ARERHLIALRAAQEHLAQAADHAE 420 Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++ LD+ AE LRLA L ITG + LL +IFS+FCIGK Sbjct: 421 QRAQSLDLFAEELRLAQEQLNAITGEFTSDDLLGVIFSRFCIGK 464 >gi|190171260|gb|ACE63700.1| ThdF [Cronobacter dublinensis] Length = 439 Score = 237 bits (605), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 155/437 (35%), Positives = 242/437 (55%), Gaps = 31/437 (7%) Query: 20 ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGED 79 + I+R+SG V + + K P R A F DG LD+G+ + FP P SFTGED Sbjct: 11 VGILRVSGQQARDVAQAVLGKL-PKARYADYLPFKDADGTALDQGIALWFPGPNSFTGED 69 Query: 80 SAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET 139 E HGG +++ +L+ + +P +R+A PGEFS RAF N K+DL +AE++ADLI + + Sbjct: 70 VLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLNDKLDLAQAEAIADLIDASS 129 Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LNDI 196 E R ++ + G S+ ++ LTH+R F+EA +DF +EE + S ++ LN++ Sbjct: 130 EQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEE-IDFLSDGKIEAQLNEV 188 Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 + D+ + ++ + G ++R G K+VI G NAGKSSL NALA ++ AIVTDI GTTRD Sbjct: 189 I---GDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRD 245 Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316 VL + ++G + I DTAG+RE D VE+ GI+R + E+E AD +L + + + + + Sbjct: 246 VLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVD-GTTTDATD 304 Query: 317 PKNI--DFI----------FIGTKSDLYSTY---TEEYDH---LISSFTGEGLEELINKI 358 P I DFI + K+D+ +E H +S+ T +G++ L + + Sbjct: 305 PAQIWPDFIARLPATLPITVVRNKADVTGEVPGISEVNGHSLVRLSARTSDGVDVLRSHL 364 Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSL 416 K + + + +RHL L +L+ A L G +++AE LRLA +L Sbjct: 365 KQSMGFD-TSMEGGFLARRRHLQALETAANHLQQGKAQLLGAWAG-ELLAEELRLAQQAL 422 Query: 417 GKITGCVDVEQLLDIIF 433 +ITG + LL IF Sbjct: 423 SEITGEFTSDDLLGRIF 439 >gi|190171296|gb|ACE63718.1| ThdF [Cronobacter sakazakii] gi|190171316|gb|ACE63728.1| ThdF [Cronobacter sakazakii] gi|190171318|gb|ACE63729.1| ThdF [Cronobacter sakazakii] gi|190171328|gb|ACE63734.1| ThdF [Cronobacter sakazakii] gi|190171344|gb|ACE63742.1| ThdF [Cronobacter sakazakii] Length = 439 Score = 237 bits (605), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 156/437 (35%), Positives = 241/437 (55%), Gaps = 31/437 (7%) Query: 20 ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGED 79 + I+R+SG V + + K P R A F DG LD+G+ + FP P SFTGED Sbjct: 11 VGILRVSGQQARDVAQAVLGKL-PKARYADYLPFKDADGTALDQGIALWFPGPNSFTGED 69 Query: 80 SAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET 139 E HGG +++ +L+ + + +R+A PGEFS RAF N K+DL +AE++ADLI + + Sbjct: 70 VLELQGHGGPVILDLLLKRILTLSGVRIARPGEFSERAFLNDKLDLAQAEAIADLIDASS 129 Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LNDI 196 E R ++ + G S+ ++ LTH+R F+EA +DF +EE + S ++ LN++ Sbjct: 130 EQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEE-IDFLSDGKIEAQLNEV 188 Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 + D+ + ++ + G ++R G K+VI G NAGKSSL NALA ++ AIVTDI GTTRD Sbjct: 189 I---GDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRD 245 Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316 VL + ++G + I DTAG+RE D VE+ GI+R + E+E AD +L + + + + + Sbjct: 246 VLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVD-GTTTDATD 304 Query: 317 PKNI--DFI----------FIGTKSDLYSTY---TEEYDH---LISSFTGEGLEELINKI 358 P I DFI + K+D+ +E H +S+ T EG++ L N + Sbjct: 305 PAQIWPDFIARLPAKLPITVVRNKADVTGEQPGISEVNGHSLIRLSARTNEGVDVLRNHL 364 Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSL 416 K + + + +RHL L +L+ A L G +++AE LRLA +L Sbjct: 365 KQSMGFD-TSMEGGFLARRRHLQALEDAANHLQQGKAQLLGAWAG-ELLAEELRLAQQAL 422 Query: 417 GKITGCVDVEQLLDIIF 433 +ITG + LL IF Sbjct: 423 SEITGEFTSDDLLGRIF 439 >gi|188996901|ref|YP_001931152.1| tRNA modification GTPase TrmE [Sulfurihydrogenibium sp. YO3AOP1] gi|188931968|gb|ACD66598.1| tRNA modification GTPase TrmE [Sulfurihydrogenibium sp. YO3AOP1] Length = 447 Score = 237 bits (605), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 168/456 (36%), Positives = 258/456 (56%), Gaps = 31/456 (6%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF-PRKASLRYFFGLDGRILDK 63 K+TI A +T +PSAISI+R+SG ++ I + PRK F G I+D+ Sbjct: 3 KDTIVANATPLIPSAISIVRISGDKALEIGRKIFSLPENITPRKVYFGKIFNNKGEIIDE 62 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 GL + F P+SFTGED E + HG + VV ILE M RLA PGEF+ RAF NGKI Sbjct: 63 GLFVYFQKPKSFTGEDLVEIYPHGSVPVVKSILEACF-MYGARLARPGEFTERAFLNGKI 121 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DLL+AE++ADLI++++E ++++ + G+LS +KL ++ S IEA+++F E D Sbjct: 122 DLLQAEAIADLINAKSERAAKIAVSILEGKLSKQINILREKLINLISLIEAEINFPE--D 179 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 V+ S +++ + +K+ I ++ K G +I+ G K+ I+G N GKSSLFNAL + Sbjct: 180 VEEIDSSLIISQLEEVKSQIDKLLASYKKGNLIKEGIKLAIVGRPNVGKSSLFNALVGYE 239 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303 AIV++I GTTRD + L ++ V + DTAG+R+T+D +EK GI++ ++ AD+IL Sbjct: 240 RAIVSEIQGTTRDFIEESLKIKDIPVILLDTAGLRDTEDKIEKIGIEKAQEKINEADIIL 299 Query: 304 LLKEINS------KKEISFPKNIDFIFIGTKSDLYST---YTEEYDHLI--SSFTGEGLE 352 + + +S KK K+ I + KSDL + + E+YD+++ S +G++ Sbjct: 300 FVIDASSGFTEEDKKIYDKIKDKPHIIVVNKSDLNNKPIDFFEKYDNIVYTSIINNQGIK 359 Query: 353 ELINKIKSILS------NKFKKLPFS--IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI 404 EL KI + L + F L S + K + + + YL +N K+ + Sbjct: 360 ELEEKIITSLGIIEKEDDLFINLRQSTLLKQAKEKIEEIENHINYL----INNKEILMIY 415 Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 I E L L ++ G + E +LD IFSKFCIGK Sbjct: 416 IQEALNY----LDEVVGAISTEDVLDNIFSKFCIGK 447 >gi|91785808|ref|YP_561014.1| tRNA modification GTPase TrmE [Burkholderia xenovorans LB400] gi|122970036|sp|Q13SH7|MNME_BURXL RecName: Full=tRNA modification GTPase mnmE gi|91689762|gb|ABE32962.1| tRNA modification GTPase trmE [Burkholderia xenovorans LB400] Length = 464 Score = 237 bits (605), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 153/465 (32%), Positives = 241/465 (51%), Gaps = 27/465 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLS----GPSCFQVCEFICKKKKPFPRKASLRYFFGL 56 + + + I A++T I ++R+S G + Q + R+AS F Sbjct: 2 LTTDSDPIVAIATAPGRGGIGVVRISFGRAGEAAAQPLMQALTGQTLAARRASYVPFLDA 61 Query: 57 DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEF 113 G LD+G+ + FP+P S+TGE E HGG V+ +L+ + + LRLA PGEF Sbjct: 62 SGDALDRGIALYFPAPHSYTGEHVLELQGHGGPVVLQLVLQRCIDAGRAFGLRLAEPGEF 121 Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173 +RRAF N K+DL +AE++ADLI + TE R + + G S ++ + +R +E Sbjct: 122 TRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRDIHALVEDVITLRMLVE 181 Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233 A LDF EEE + + + + ++ + +S+ + G ++R G +V+ G N GKS Sbjct: 182 ATLDFPEEE-IDFLEAADARGKLARIRERLGHVLSEARQGALLREGLSVVLAGQPNVGKS 240 Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293 SL NALA ++AIVT I GTTRD + + +EG + + DTAG+R+T+D VEK GI RT+ Sbjct: 241 SLLNALAGAELAIVTPIAGTTRDKVAQTIQIEGIPLHVIDTAGLRDTEDEVEKIGIARTW 300 Query: 294 LEVENADLILLLKEINSKKEIS-------FPKNIDFIFIGTKSDL--YSTYTEEYDH--- 341 E+E AD++L L + + + FP + + + K+DL + T D Sbjct: 301 NEIERADVVLHLLDARTGMTVEDEAIAGRFPAGVPVVRVLNKTDLTGLAPATRALDADLD 360 Query: 342 ----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--L 395 +S+ G+G+ L ++ I + + + +RHL L +L A+ Sbjct: 361 LSEVRLSAKQGDGVALLREELLRIAGWQAGAESVYL-ARERHLIALRAAEEHLATAAAHA 419 Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++ LD+ AE LRLA L ITG + LL +IFS+FCIGK Sbjct: 420 DQNSQALDLFAEELRLAQDQLNSITGEFSSDDLLGVIFSRFCIGK 464 >gi|296157619|ref|ZP_06840454.1| tRNA modification GTPase TrmE [Burkholderia sp. Ch1-1] gi|295892391|gb|EFG72174.1| tRNA modification GTPase TrmE [Burkholderia sp. Ch1-1] Length = 464 Score = 237 bits (605), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 153/465 (32%), Positives = 242/465 (52%), Gaps = 27/465 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLS----GPSCFQVCEFICKKKKPFPRKASLRYFFGL 56 + + + I A++T I ++R+S G + Q + R AS F Sbjct: 2 LTTDSDPIVAIATAPGRGGIGVVRISFGRAGEAAAQPLMQALTGQTLAARHASYVPFLDA 61 Query: 57 DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEF 113 +G LD+G+ + FP+P S+TGE E HGG V+ +L+ + + LRLA PGEF Sbjct: 62 NGSALDRGIALYFPAPHSYTGEHVLELQGHGGPVVLQLVLQRCIDAGRAFGLRLAEPGEF 121 Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173 +RRAF N K+DL +AE++ADLI + TE R + + G S ++ + +R +E Sbjct: 122 TRRAFLNDKLDLTQAEAVADLIEASTEAAARSAGRSLDGAFSRDIHALVEDVITLRMLVE 181 Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233 A LDF EEE + + + + ++ ++ +S+ + G ++R G +V+ G N GKS Sbjct: 182 ATLDFPEEE-IDFLEAADARGKLARIRERLAHVLSEARQGALLREGLSVVLAGQPNVGKS 240 Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293 SL NALA ++AIVT I GTTRD + + +EG + + DTAG+R+T+D VEK GI RT+ Sbjct: 241 SLLNALAGAELAIVTPIAGTTRDKVAQTIQIEGIPLHVIDTAGLRDTEDEVEKIGIARTW 300 Query: 294 LEVENADLILLLKEINSKKEIS-------FPKNIDFIFIGTKSDL--YSTYTEEYDH--- 341 E+E AD++L L + + + FP + + + K+DL + T D Sbjct: 301 NEIERADVVLHLLDARTGMTVEDEAIAGRFPAGVPVVRVLNKTDLTGLAPATRALDADPD 360 Query: 342 ----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--L 395 +S+ G+G+ L ++ I + + + +RHL L +L A+ Sbjct: 361 LSEVRLSAKQGDGVALLREELLRIAGWQAGAESVYL-ARERHLIALRAAEEHLATAAAHA 419 Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++ LD+ AE LRLA L ITG + LL +IFS+FCIGK Sbjct: 420 DQNSQALDLFAEELRLAQDQLNSITGEFSSDDLLGVIFSRFCIGK 464 >gi|123967744|ref|YP_001008602.1| tRNA modification GTPase TrmE [Prochlorococcus marinus str. AS9601] gi|166234808|sp|A2BNY4|MNME_PROMS RecName: Full=tRNA modification GTPase mnmE gi|123197854|gb|ABM69495.1| putative thiophen / furan oxidation protein [Prochlorococcus marinus str. AS9601] Length = 460 Score = 237 bits (605), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 170/442 (38%), Positives = 242/442 (54%), Gaps = 25/442 (5%) Query: 19 AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DGRILDKGLLIVFPSPE 73 ++IIR+SG C+ I + K + + S R F G + +D+ L++V SP Sbjct: 24 GVAIIRVSGKDAINSCKKIVQTKSKYAWE-SHRVFRGFIQENKQNKFIDEVLILVMKSPN 82 Query: 74 SFTGEDSAEFHVHGGIAVVNGILE-ELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLA 132 SFTGED E H HGGI +VN +L+ L+ +RLANPGEFS+RAF NGKIDL +AES+ Sbjct: 83 SFTGEDVVELHCHGGIIIVNKVLKILLSNNSRVRLANPGEFSQRAFLNGKIDLTQAESIN 142 Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192 LI++ L+ G+ GE+ + L + IEA +DF EED +F + Sbjct: 143 QLINASNARSAELAFSGVQGEIKKKIDDIKNDLINQLCEIEARVDF--EEDFTDFDYTKY 200 Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252 L +I +K I I K I NG I ++G +N GKSSL N LAKK+ AIVT+IPG Sbjct: 201 LKNIKKVKEKIELLIENAKRNSYIHNGISIALIGKTNVGKSSLLNLLAKKEKAIVTNIPG 260 Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI---- 308 TTRDV+ ++L + +KI DTAGIRET + +E GIK++F +++ +D I+ + + Sbjct: 261 TTRDVIEVNLTINDIPMKIIDTAGIRETHEQIESIGIKKSFGKIKESDFIIYIYSLEEGF 320 Query: 309 --NSKKEIS-FPKNIDFIFIGTKSDLY---STYTEEYDH--LISSFTGEGLEELINKIKS 360 KK I PK +G K DL + + E H L+S +G LI+ I Sbjct: 321 NEEDKKIIQEIPKEKLITILGNKKDLIDCKNINSNELKHTILMSIKNNDGERLLIDTI-- 378 Query: 361 ILSNKFKKLP-FSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGLDIIAENLRLASVSLGK 418 I K++ +I + RHL +LS + L + + E D+++ LR +L K Sbjct: 379 IKKCGLKQVENINIFLNDRHLTNLSACLSNLNDTDEIIENKLPFDLLSIELRDGIQNLSK 438 Query: 419 ITGCVDVEQLLDIIFSKFCIGK 440 ITG E+LLD IFSKFCIGK Sbjct: 439 ITGQELTEELLDNIFSKFCIGK 460 >gi|152988592|ref|YP_001351679.1| tRNA modification GTPase TrmE [Pseudomonas aeruginosa PA7] gi|166234809|sp|A6VF44|MNME_PSEA7 RecName: Full=tRNA modification GTPase mnmE gi|150963750|gb|ABR85775.1| tRNA modification GTPase TrmE [Pseudomonas aeruginosa PA7] Length = 455 Score = 237 bits (605), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 158/444 (35%), Positives = 245/444 (55%), Gaps = 27/444 (6%) Query: 18 SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77 + I+R+SGP ++ + ++ PR A F G+++D+GL + FP P SFTG Sbjct: 18 GGVGIVRVSGPLAGRIAVEVSGRELK-PRHAHYGPFLDGGGQVIDEGLSLYFPGPNSFTG 76 Query: 78 EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137 ED E HGG V++ +++ ++ R A PGEFS RAF N K+DL +AE++ADLI + Sbjct: 77 EDVLELQGHGGPVVLDLLVQRCLEL-GARQARPGEFSERAFLNDKLDLAQAEAIADLIEA 135 Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197 +E R ++ + GE S ++L +R ++EA +DF EEE + + VL + Sbjct: 136 SSEQAARNALRSLQGEFSRRVHALTEQLISLRIYVEAAIDFPEEE-IDFLADGHVLGLLE 194 Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257 ++ ++S+ + G ++R+G +VI G NAGKSSL NALA ++ AIVTDI GTTRDV Sbjct: 195 KVRTELSTVRREASQGALLRDGMTVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDV 254 Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS-- 315 L + ++G + + DTAG+R+T+D VEK G++R + AD +LL+ + + + Sbjct: 255 LREHIHIDGMPLHVVDTAGLRDTEDHVEKIGVERALKAIGEADRVLLVVDATAPEAADPF 314 Query: 316 --FPKNID-------FIFIGTKSDLYS---TYTEEYD-HL---ISSFTGEGLEELINKIK 359 +P+ +D I K+DL + E D H+ +S+ T GLE L +K Sbjct: 315 SLWPEFLDQRPEPGKVTLIRNKADLSTEAIGLEESADGHVTITLSARTNAGLELLREHLK 374 Query: 360 SILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDIIAENLRLASVSL 416 + + + + FS + +RHL L LE A L G +++AE+LR A L Sbjct: 375 ACMGFEQTAESGFS--ARRRHLEALRLAGNALEHGHAQLIHNGAG-ELLAEDLRQAQQHL 431 Query: 417 GKITGCVDVEQLLDIIFSKFCIGK 440 G+ITG + LL IFS FCIGK Sbjct: 432 GEITGAFTPDDLLGRIFSSFCIGK 455 >gi|113866134|ref|YP_724623.1| tRNA modification GTPase TrmE [Ralstonia eutropha H16] gi|113524910|emb|CAJ91255.1| Predicted GTPase [Ralstonia eutropha H16] Length = 488 Score = 237 bits (605), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 159/478 (33%), Positives = 246/478 (51%), Gaps = 41/478 (8%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M + I A++T I ++R+SGP V +C + PR A+ F G++ Sbjct: 14 MTAPQVPIAAIATAPGRGGIGVVRVSGPDVGPVMRSVCGQALK-PRHATYLPFLDGHGKV 72 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN---LRLANPGEFSRRA 117 +D GL + FP+P S+TGE+ E HGG V+ +L + + LRLA PGEF+RRA Sbjct: 73 IDHGLALYFPAPNSYTGEEVLELQGHGGPVVMQMLLTRCLQAGDGIGLRLAEPGEFTRRA 132 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F N K+DL +AE++ADLI + TE R + M GE S+ Q +DK+ H+R +EA LD Sbjct: 133 FLNDKLDLAQAEAVADLIEASTEAAARSAARSMEGEFSNAIRQLVDKVIHLRMLVEATLD 192 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 F EEE + + + ++ ++S ++Q + G ++R G +V+ G N GKSSL N Sbjct: 193 FPEEE-IDFLEQSDARGQLATIRTELSGVLAQARQGALLREGLSVVLAGQPNVGKSSLLN 251 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEV 296 ALA ++AIVT I GTTRD + + ++G + I DTAG+RE D VE+ GI+RT+ + Sbjct: 252 ALAGAELAIVTPIAGTTRDRVRETIQIDGIPLHIIDTAGLREHAADEVERIGIERTWDAI 311 Query: 297 ENADLILLLKE---------------INSKKEISFPKNI----------------DFIFI 325 AD++L L + I+ + P D +F Sbjct: 312 RRADIVLHLVDATDYLRHGLSETDDAIDDQLSGQLPPGSPIVRIVNKIDKAPAVGDVVFG 371 Query: 326 GTKSDLYSTYTEEYDHL-ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384 G + + + + IS+ TG G+E L ++ ++ + + + +RHL L Sbjct: 372 GNRPHVVAANGPNPTEIWISARTGAGIELLRRELLRLVGWQSGN-EGNFLARERHLTALR 430 Query: 385 QTVRYLEMAS--LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +L++A+ + LD+ AE LRLA L ITG + LL IF++FCIGK Sbjct: 431 NAQSHLDIAAEQAEHQAQALDLFAEELRLAQDCLNSITGEFTSDDLLGTIFTRFCIGK 488 >gi|190171352|gb|ACE63746.1| ThdF [Cronobacter turicensis] Length = 439 Score = 237 bits (605), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 155/437 (35%), Positives = 242/437 (55%), Gaps = 31/437 (7%) Query: 20 ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGED 79 + I+R+SG V + + K P R A F DG LD+G+ + FP P SFTGED Sbjct: 11 VGILRVSGQQARDVAQAVLGKL-PKARYADYLPFKDADGTALDQGIALWFPGPNSFTGED 69 Query: 80 SAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET 139 E HGG +++ +L+ + +P +R+A PGEFS RAF N K+DL +AE++ADLI + + Sbjct: 70 VLELQGHGGPVILDLLLKRILTIPGVRIAKPGEFSERAFLNDKLDLAQAEAIADLIDASS 129 Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LNDI 196 E R ++ + G S+ ++ LTH+R F+EA +DF +EE + S ++ LN++ Sbjct: 130 EQAARSALNSLQGAFSARVNHLVEALTHLRIFVEAAIDFPDEE-IDFLSDGKIEAQLNEV 188 Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 + D+ + ++ + G ++R G K+VI G NAGKSSL NALA ++ AIVTDI GTTRD Sbjct: 189 I---GDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRD 245 Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316 VL + ++G + I DTAG+RE D VE+ GI+R + E+E AD +L + + + + + Sbjct: 246 VLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVD-GTTTDATD 304 Query: 317 PKNI--DFI----------FIGTKSDLYSTY---TEEYDH---LISSFTGEGLEELINKI 358 P I DFI + K+D+ +E H +S+ T +G++ L + + Sbjct: 305 PAQIWPDFIARLPAKLPITVVRNKADVTGEQPGLSEVNGHSLIRLSARTSDGVDVLRSHL 364 Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSL 416 K + + + +RHL L +L+ A L G +++AE LRLA +L Sbjct: 365 KQSMGFD-TSMEGGFLARRRHLQALEDAANHLQQGKAQLLGAWAG-ELLAEELRLAQQAL 422 Query: 417 GKITGCVDVEQLLDIIF 433 +ITG + LL IF Sbjct: 423 SEITGEFTSDDLLGRIF 439 >gi|126657505|ref|ZP_01728661.1| tRNA modification GTPase [Cyanothece sp. CCY0110] gi|126621209|gb|EAZ91922.1| tRNA modification GTPase [Cyanothece sp. CCY0110] Length = 460 Score = 237 bits (605), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 167/467 (35%), Positives = 256/467 (54%), Gaps = 37/467 (7%) Query: 1 MNHEKETIFAVSTGALPS--AISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL 56 M + ETI A++T +P +I IIRLSG + + + FI K+ + S R +G Sbjct: 4 MITQGETIAAIATAIVPQQGSIGIIRLSGNNALNIAQTLFIAPGKQKW---ESHRILYGY 60 Query: 57 -----DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPG 111 ++LD+ LL++ +P S+T ED EFH HGGI V +L+ L LA PG Sbjct: 61 IRHPQTEQVLDEALLLMMLAPRSYTREDVIEFHCHGGIMPVQQVLQ-LCLEQGAILAQPG 119 Query: 112 EFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTH---- 167 EF+ RAF NG+IDL +AES+++L+S+ ++ ++++ G+ G+L+ Q I KL H Sbjct: 120 EFTLRAFLNGRIDLTQAESISELVSARSQQASQMALAGLQGKLA----QPIQKLRHHCLD 175 Query: 168 IRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227 I + IEA +DF E+D+ K + + + + S + + GE++RNG K+ I+G Sbjct: 176 ILAEIEARIDF--EDDLPPLDKKAISQGLEEILEQVESILKTAEQGELLRNGLKVAIVGR 233 Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKE 287 N GKSSL NA ++ D AIVTD+PGTTRDV+ L + G +++ DTAGIR+T D VEK Sbjct: 234 PNVGKSSLLNAWSRSDRAIVTDLPGTTRDVVESQLVVGGIPIQVLDTAGIRQTTDQVEKI 293 Query: 288 GIKRTFLEVENADLILLLKEIN-----SKKEISFP-KNIDFIFIGTKSDL----YSTYTE 337 G++R+ L ADL+LL + EI P +++ I + K DL S + Sbjct: 294 GVERSRLAASQADLVLLTIDATVGWTVEDSEIYQPIRHLPTILVINKIDLATPDLSQFPP 353 Query: 338 EYDHLI--SSFTGEGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS 394 E ++ S+ +G+E L + I + I K ++R L+++ L+ Sbjct: 354 EIKGIVKTSAANHQGIEALESTILQGINQQKLTANNLDFAINQRQAAALTRSKIALQQVQ 413 Query: 395 LN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + +D LD +LR A LG+ITG E +LD IFS+FCIGK Sbjct: 414 ITITEDLPLDFWTIDLRSAIQVLGEITGEEITESVLDKIFSRFCIGK 460 >gi|205422374|sp|Q0KFG6|MNME_RALEH RecName: Full=tRNA modification GTPase mnmE Length = 475 Score = 237 bits (604), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 159/478 (33%), Positives = 244/478 (51%), Gaps = 41/478 (8%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M + I A++T I ++R+SGP V +C + PR A+ F G++ Sbjct: 1 MTAPQVPIAAIATAPGRGGIGVVRVSGPDVGPVMRSVCGQALK-PRHATYLPFLDGHGKV 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN---LRLANPGEFSRRA 117 +D GL + FP+P S+TGE+ E HGG V+ +L + + LRLA PGEF+RRA Sbjct: 60 IDHGLALYFPAPNSYTGEEVLELQGHGGPVVMQMLLTRCLQAGDGIGLRLAEPGEFTRRA 119 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F N K+DL +AE++ADLI + TE R + M GE S+ Q +DK+ H+R +EA LD Sbjct: 120 FLNDKLDLAQAEAVADLIEASTEAAARSAARSMEGEFSNAIRQLVDKVIHLRMLVEATLD 179 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 F EEE + + + ++ ++S ++Q + G ++R G +V+ G N GKSSL N Sbjct: 180 FPEEE-IDFLEQSDARGQLATIRTELSGVLAQARQGALLREGLSVVLAGQPNVGKSSLLN 238 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEV 296 ALA ++AIVT I GTTRD + + ++G + I DTAG+RE D VE+ GI+RT+ + Sbjct: 239 ALAGAELAIVTPIAGTTRDRVRETIQIDGIPLHIIDTAGLREHAADEVERIGIERTWDAI 298 Query: 297 ENADLILLLKEINS-------------------------------KKEISFPKNIDFIFI 325 AD++L L + K P D +F Sbjct: 299 RRADIVLHLVDATDYLRHGLSETDDAIDDQLSGQLPPGSPIVRIVNKIDKAPAVGDVVFG 358 Query: 326 GTKSDLYSTYTEEYDHL-ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384 G + + + + IS+ TG G+E L ++ ++ + + + +RHL L Sbjct: 359 GNRPHVVAANGPNPTEIWISARTGAGIELLRRELLRLVGWQSGN-EGNFLARERHLTALR 417 Query: 385 QTVRYLEMAS--LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +L++A+ + LD+ AE LRLA L ITG + LL IF++FCIGK Sbjct: 418 NAQSHLDIAAEQAEHQAQALDLFAEELRLAQDCLNSITGEFTSDDLLGTIFTRFCIGK 475 >gi|90194122|gb|ABD92622.1| ThdF [Actinobacillus indolicus] Length = 436 Score = 237 bits (604), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 157/437 (35%), Positives = 240/437 (54%), Gaps = 29/437 (6%) Query: 19 AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGE 78 I I+R+SGP V E + K P PR A F DG +LD+G+ + F +P SFTGE Sbjct: 7 GIGILRVSGPLAADVAEAVLGKC-PKPRMADYLPFKDEDGTVLDQGIALFFKAPNSFTGE 65 Query: 79 DSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSE 138 D E HGG +++ +L + K+ +R+A GEFS +AF N K+DL +AE++ADLI + Sbjct: 66 DVLELQGHGGQVILDLLLNRILKVKGVRIARAGEFSEQAFLNDKLDLAQAEAIADLIDAT 125 Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LND 195 +E R +++ + GE S +D + ++R+++EA +DF +EE + + ++ LN+ Sbjct: 126 SEQAARSALKSLQGEFSHKINALVDNVIYLRTYVEAAIDFPDEE-IDFLADGKIEAKLNE 184 Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255 I+ +++ + K G I+R G K+VI G NAGKSSL NALA ++ AIVTDI GTTR Sbjct: 185 II---TQLANVRQEAKQGSILREGMKVVIAGKPNAGKSSLLNALAGREAAIVTDIAGTTR 241 Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 DVL + ++G + I DTAG+RE D VEK GIKR + E+E AD +LL+ + N + Sbjct: 242 DVLREHIHIDGMPLHIIDTAGLREASDEVEKIGIKRAWDEIEQADHVLLMIDSNESQADH 301 Query: 316 F-----------PKNIDFIFIGTKSDLYS-----TYTEEYDHL-ISSFTGEGLEELINKI 358 F PKNI I K DL T+ + + +S+ T G++ L + Sbjct: 302 FQQEWAEFLAKLPKNIPVTVIRNKVDLTGETESLVQTDNFTVIRLSAQTKVGVDLLREHL 361 Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLASVSL 416 K + + + +RHL L +L+ L + G +++AE LR+ +L Sbjct: 362 KKSMGYQ-SSTEGGFIARRRHLVALETAAEHLQRGHVQLTQFYAG-ELLAEELRMVQNAL 419 Query: 417 GKITGCVDVEQLLDIIF 433 +ITG + LL IF Sbjct: 420 SEITGQFTSDDLLGNIF 436 >gi|328865434|gb|EGG13820.1| GTP-binding protein 3 [Dictyostelium fasciculatum] Length = 640 Score = 237 bits (604), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 165/492 (33%), Positives = 257/492 (52%), Gaps = 65/492 (13%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK---------KKKPFPRKASLRYFFG 55 K+TIFA+S+G+ + +++IR+SG S V + + K PR A+L Sbjct: 95 KDTIFALSSGSNKAGVAVIRVSGRSSNDVLQRLTMFSSISGDGGTKTIVPRMATLSSIHH 154 Query: 56 LDGR-ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114 + +DK +L+ FP P SFTGED E HVHGG AVV+ L+ +A +P R A GEF+ Sbjct: 155 PQTKEQIDKAMLLWFPQPNSFTGEDVLELHVHGGRAVVHDTLDAIACVPGTRSAVAGEFT 214 Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174 RRAF+N K+DL E E L+DL+ ++T QRR+++ M G L+ ++L ++ EA Sbjct: 215 RRAFDNNKMDLSEVEGLSDLLDAQTNHQRRVALLQMQGSLAKFTSHLRNRLIRASAYTEA 274 Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234 +DF ++ ++ + I +K I H++ G++GE +R G I I+G NAGKSS Sbjct: 275 FIDFGDDAEIDPAVVETSKRAIREIKETIEGHLANGRIGERLREGASIAIVGPPNAGKSS 334 Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294 L N LA++ +IV+ IPGTTRDV+ + LD+ GY V I DTAGIR D +E+EGI Sbjct: 335 LINILAQRRASIVSSIPGTTRDVVEVVLDIGGYPVVIGDTAGIRVGQDEIEQEGIVMAKE 394 Query: 295 EVENADLIL----------------------LLKEINSKKEISFPKNIDFIFIG-----T 327 +++D+ + LL+ INS I F K + + Sbjct: 395 RFKDSDISICVFDSSSFFTSGQVGTIIIDPTLLELINSNTIIVFNKTDLLLNNNNDNKQS 454 Query: 328 KSDLYSTYTEEY------------DHL-ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374 D+ + + +H IS + +G+++L+ +++ L N F+ P Sbjct: 455 WKDIKTNLLNQIQQQQQSNSTTTINHCEISCSSNQGIKDLLLVLENNLKNLFETSNSDEP 514 Query: 375 -----SHKRHLYHLSQTV-RYLEMASLNEKDCGLDII--AENLRLASVSLGKITGCVDVE 426 HK HL + +++ R+L+ C D++ AE LR A +G I+ V+V+ Sbjct: 515 LLTRLRHKEHLRNCVESLDRFLDY-------CEYDVVIAAEELRSAIKEIGAISHHVNVD 567 Query: 427 QLLDIIFSKFCI 438 LLD+IF FCI Sbjct: 568 DLLDVIFKDFCI 579 >gi|225554700|gb|EEH02995.1| tRNA modification GTPase GTPBP3 [Ajellomyces capsulatus G186AR] Length = 615 Score = 237 bits (604), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 176/546 (32%), Positives = 274/546 (50%), Gaps = 116/546 (21%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLD-----GRI 60 TI+A+ST +AI+I+R+SGP+C Q+ + +C K+ P PR A+LR + I Sbjct: 63 TIYALSTAPGRAAIAIVRVSGPACVQIYDALCPKRPLPNPRVAALRTLYDPSVPPSVNTI 122 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAK-----------MPNLRLAN 109 LD+ +++ FP+P + TGED E H+HGG AVV +L + + MP++R A Sbjct: 123 LDRAVVLHFPAPNTVTGEDVLELHIHGGPAVVKAVLNAIPRCAGAFSNEKIAMPSIRYAE 182 Query: 110 PGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR 169 PGEF+RRAF N ++ L + E+L + +S+ETE QRRL++ G SG L+ Y +W +L + R Sbjct: 183 PGEFTRRAFLNDRLSLPQIEALGNTLSAETEHQRRLAVRGTSGSLAFRYERWRQQLLYAR 242 Query: 170 SFIEADLDFSE----EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVIL 225 +EA +DFSE +E +++F S + ++ L I+ HI GE++R+G +I +L Sbjct: 243 GEMEALIDFSEDQHFDESIEDFVSS-ITGEVRNLVRQINLHIENASKGELLRSGIRIALL 301 Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI-- 283 G NAGKSSL N + ++ AIV+ GTTRD++ + +D+ GY K D AG+R +D I Sbjct: 302 GAPNAGKSSLLNRIVGREAAIVSSEEGTTRDIVDVGVDIGGYFCKFGDMAGLR-SDHIAR 360 Query: 284 --------VEKEGIKRTFLEVENADLILL---LKEINSKKEISF---PKNID-------- 321 VE+EGI+R +D++++ L+E ++ + P+ +D Sbjct: 361 SGSMPIGAVEQEGIRRAKARALESDVVIVVLSLEESDNGTGVKLVLEPEVVDAVRSCIAL 420 Query: 322 ---FIFIGTKSDLYS--TYTEEYDH-LISSFTGE-------------------------- 349 I K D YS TYT L+ S T E Sbjct: 421 EKHMIVAVNKFDKYSPTTYTARTQQELVDSLTEEISSVEPRLTQDQIFLISCREAENEVS 480 Query: 350 ----------GLEELINKIKSI-----LSN---KFKKLPF--SIPSHKRHLYHLSQTVRY 389 L ELI K + L N +F KL + S+ R +L + V++ Sbjct: 481 KEADPGNIQKFLGELIRTFKRMSTPSELDNGNEQFDKLYWEDSLGVTHRQRSNLQKCVQH 540 Query: 390 L------------EMASLNEKDCGLDII--AENLRLASVSLGKITG---CVDVEQLLDII 432 L A+ + + DI+ AE+LR A+ L KITG DVE +L ++ Sbjct: 541 LNDFLSQTCQTPDNAANAEQIEVNFDIVTAAEHLRFAADCLAKITGRGESGDVEDVLGVV 600 Query: 433 FSKFCI 438 F K+ + Sbjct: 601 FEKYSL 606 >gi|307151569|ref|YP_003886953.1| tRNA modification GTPase TrmE [Cyanothece sp. PCC 7822] gi|306981797|gb|ADN13678.1| tRNA modification GTPase TrmE [Cyanothece sp. PCC 7822] Length = 458 Score = 237 bits (604), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 160/459 (34%), Positives = 252/459 (54%), Gaps = 31/459 (6%) Query: 6 ETIFAVSTGALPS--AISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL----- 56 ETI A++T +P +I I+RLSG + F K+ + + R +G Sbjct: 7 ETIAAIATAIVPQQGSIGIVRLSGTLALAIARTVFYAPGKQAW---ETHRILYGYIRHPQ 63 Query: 57 DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 G+++D+ LL++ +P S+T ED EFH HGGI V +L+ L RLA PGEF+ R Sbjct: 64 SGQLIDEALLLLMLAPRSYTKEDVIEFHCHGGIIPVQQVLQ-LCLENGARLAQPGEFTLR 122 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NG++DL +AES+A+L++S++ ++++ G+ G+L+ Q I + +EA + Sbjct: 123 AFLNGRLDLTQAESVAELVNSQSVQASQIALAGLQGKLAHPIRQLRSNCLDILAEVEARI 182 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 DF EED+ + E+ + + +++ ++ GE++R+G K+ I+G N GKSSL Sbjct: 183 DF--EEDLPPLNEDEIKQHLAAVLIEVNQILATADRGELLRSGLKVAIVGRPNVGKSSLL 240 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 NA ++ D AIVTD+PGTTRDV+ L + G +++ DTAGIRETDD VEK G++R+ Sbjct: 241 NAWSRSDRAIVTDLPGTTRDVVESQLVVGGIPIQVLDTAGIRETDDRVEKIGVERSRHAA 300 Query: 297 ENADLILLLKEINS------KKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFT--- 347 E ADLILL + + ++ K+ I + K+DL + Y I+S Sbjct: 301 EAADLILLTIDAQTGWTPEDEQIYQQVKHRPLILVINKTDLQEAKSVNYPSDITSVVETV 360 Query: 348 ---GEGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCG 401 EG+++L I S+ S I ++R L+Q L+ ++N + Sbjct: 361 AAKNEGIDQLEKIILNSVQSGHLTVTNLEIAINQRQAAALTQASLSLQQVQETINNQ-LP 419 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LD +LR A +LG+ITG E +LD IFS+FC+GK Sbjct: 420 LDFWTIDLRSAIQALGEITGEEVTESVLDRIFSRFCLGK 458 >gi|171464336|ref|YP_001798449.1| tRNA modification GTPase TrmE [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193874|gb|ACB44835.1| tRNA modification GTPase TrmE [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 454 Score = 237 bits (604), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 155/457 (33%), Positives = 255/457 (55%), Gaps = 20/457 (4%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M K I A++T + + ++R+SG + + + +KK PR+A+L G+ Sbjct: 1 MMTRKLPIIAIATAPGKAGVGVVRISGQNLIDLTTALFQKKLS-PRQANLLTLSDEHGQT 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEFSRRA 117 +D+ + I F P SFTGED E HGG ++ +++ EL K L +A PGEF+ RA Sbjct: 60 IDQLIAIYFAGPASFTGEDVLELQCHGGPQLLELVMKRCLELGKNEGLVIAEPGEFTLRA 119 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 + N KIDL +AE++ADLI +++E R + + G S I+++T +R +E+ LD Sbjct: 120 YLNNKIDLAQAEAIADLIDAQSEAAVRGAACSLQGAFSDDINNLIEEITQLRILVESTLD 179 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 F EEE ++ + + ++ +K + + + K G+I+R+G ++V+ G N GKSSL N Sbjct: 180 FPEEE-IEFLENAQARQRLVTVKEKLHTLRAGAKQGKILRDGVQLVLAGAPNVGKSSLIN 238 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 L ++VAIVT I GTTRD + + ++G + I DTAG+RET D+VE +GI+R++ + Sbjct: 239 RLVGEEVAIVTPIAGTTRDRVRESITIDGVPMHIMDTAGLRETADLVEAKGIERSWDSIR 298 Query: 298 NADLILLLKEINS-------KKEI--SFPKNIDFIFIGTKSDLYSTYTEEYDH---LISS 345 ADL++ L + S K +I P + + K+DL S +++ LIS+ Sbjct: 299 LADLVIFLTDAQSGAQKDDLKTQILKELPSKCAVLEVVNKADLLSDHSKSPSTGALLISA 358 Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL--NEKDCGLD 403 TG G+E L KI +++ + +I + +RHL + + ++E + + L+ Sbjct: 359 KTGAGIELLKQKILALVGWSGPQ-EGAILARRRHLDCIERAAEHIERSEYFAANGNNSLE 417 Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + AE L LA LG+ITG + + LL IFS+FCIGK Sbjct: 418 LFAEELSLAQKHLGEITGKLLPDDLLGKIFSQFCIGK 454 >gi|171316351|ref|ZP_02905571.1| tRNA modification GTPase TrmE [Burkholderia ambifaria MEX-5] gi|171098480|gb|EDT43282.1| tRNA modification GTPase TrmE [Burkholderia ambifaria MEX-5] Length = 464 Score = 237 bits (604), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 157/464 (33%), Positives = 247/464 (53%), Gaps = 31/464 (6%) Query: 4 EKETIFAVSTGALPSAISIIRLS-----GPSCFQVCEFICKKKKPFPRKASLRYFFGLDG 58 + + I A++T A I ++R+S + + + +C ++ PR AS F G Sbjct: 5 DSDPIVAIATAAGRGGIGVVRVSFGRGGEAAALPLIDALCGQRLA-PRHASYVPFLDEHG 63 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEFSR 115 LD+G+ + FP+P S+TGE E HGG V+ +L+ + + LRLA PGEF+R Sbjct: 64 APLDRGIALYFPAPHSYTGEHVLELQGHGGPIVMQLLLQRCLDAGRGFGLRLAQPGEFTR 123 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF N K+DL +AE++ADLI + TE R + + G S ++ + +R +EA Sbjct: 124 RAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRQIHALVEDVITLRMLVEAT 183 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 LDF EEE + + + + ++ + + + G ++R G +V+ G N GKSSL Sbjct: 184 LDFPEEE-IDFLEAADARGKLARIREQLVHVLGDARQGALLREGLSVVLAGQPNVGKSSL 242 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 NALA ++AIVT I GTTRD + + +EG + I DTAG+RET+D VE+ GI RT+ E Sbjct: 243 LNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRETEDEVERIGIARTWSE 302 Query: 296 VENADLILLLKE----INSKKEI---SFPKNIDFIFIGTKSDLYST------YTEEYD-- 340 +E AD++L L + + ++ E+ FP + + + K+DL + E D Sbjct: 303 IERADVVLHLLDSRTGMTAEDEVIAARFPGGVPVVRVLNKTDLTGVPACVEHPSAEGDLT 362 Query: 341 --HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LN 396 HL S+ G+G++ L ++ I + + + +RHL L +L A+ Sbjct: 363 EVHL-SAKRGDGIDMLRAELLRIAGWQAGAEGVYL-ARERHLIALRAAQEHLAQATDHAE 420 Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++ LD+ AE LRLA L ITG + LL +IFS+FCIGK Sbjct: 421 QRAQSLDLFAEELRLAQEQLNAITGEFTSDDLLGVIFSRFCIGK 464 >gi|115353264|ref|YP_775103.1| tRNA modification GTPase TrmE [Burkholderia ambifaria AMMD] gi|115283252|gb|ABI88769.1| tRNA modification GTPase trmE [Burkholderia ambifaria AMMD] Length = 489 Score = 236 bits (603), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 155/466 (33%), Positives = 246/466 (52%), Gaps = 35/466 (7%) Query: 4 EKETIFAVSTGALPSAISIIRLS-----GPSCFQVCEFICKKKKPFPRKASLRYFFGLDG 58 + + I A++T A I ++R+S + + + +C ++ PR AS F G Sbjct: 30 DSDPIVAIATAAGRGGIGVVRVSFGRGGEAAALPLIDALCGQRLA-PRHASYVPFVDEHG 88 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEFSR 115 LD+G+ + FP+P S+TGE E HGG V+ +L+ + + LRLA PGEF+R Sbjct: 89 APLDRGIALYFPAPHSYTGEHVLELQGHGGPIVMQLLLQRCLDAGRGFGLRLAQPGEFTR 148 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF N K+DL +AE++ADLI + TE R + + G S ++ + +R +EA Sbjct: 149 RAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRQIHALVEDVITLRMLVEAT 208 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 LDF EEE + + + + ++ ++ + + G ++R G +V+ G N GKSSL Sbjct: 209 LDFPEEE-IDFLEAADARGKLAKIREQLAHVLGDARQGALLREGLSVVLAGQPNVGKSSL 267 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 NALA ++AIVT I GTTRD + + +EG + I DTAG+RET+D VE+ GI RT+ E Sbjct: 268 LNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRETEDEVERIGIARTWSE 327 Query: 296 VENADLILLLKE----INSKKEI---SFPKNIDFIFIGTKSDLYST------------YT 336 +E AD++L L + + + E+ FP + + + K+DL T Sbjct: 328 IERADVVLHLLDSRTGMTADDEVIAARFPGGVPVVRVLNKTDLTGVPACVEHPAAAGDLT 387 Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS-- 394 E + +S+ G+G++ L ++ I + + + +RHL L +L A+ Sbjct: 388 EVH---LSAKRGDGIDMLRAELLRIAGWQAGAEGVYL-ARERHLIALRAAQEHLAQAADH 443 Query: 395 LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++ LD+ AE LRLA L ITG + LL +IFS+FCIGK Sbjct: 444 AEQRAQSLDLFAEELRLAQEQLNAITGEFTSDDLLGVIFSRFCIGK 489 >gi|90194120|gb|ABD92621.1| ThdF [Actinobacillus pleuropneumoniae serovar 8 str. 405] Length = 436 Score = 236 bits (603), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 156/437 (35%), Positives = 243/437 (55%), Gaps = 29/437 (6%) Query: 19 AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGE 78 +SI+R+SGP +V + + K+ PR A+ F DG +LD+G+ + F +P SFTGE Sbjct: 7 GVSILRISGPLAQEVAKEVLGKELK-PRLANYLPFKDQDGTVLDQGIALFFKAPNSFTGE 65 Query: 79 DSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSE 138 D E HGG +++ +L+ + K+ +R+A GEFS +AF N K+DL +AE++ADLI + Sbjct: 66 DVLELQGHGGQVILDILLKRILKIKGIRIARAGEFSEQAFLNDKLDLAQAEAIADLIDAT 125 Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LND 195 +E R +++ + GE S+ Q +D + ++R+++EA +DF +EE + + ++ LND Sbjct: 126 SEQAARSALKSLQGEFSNKINQLVDSVIYLRTYVEAAIDFPDEE-IDFLADGKIEGHLND 184 Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255 I+ N + QG I+R G K+VI G NAGKSSL NALA ++ AIVT+I GTTR Sbjct: 185 IIRQLNGVRKEAKQGA---ILREGMKVVIAGRPNAGKSSLLNALAGREAAIVTNIAGTTR 241 Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 DVL + ++G + I DTAG+RE D VEK GI+R + E+E AD +LL+ + + + Sbjct: 242 DVLREHIHIDGMPLHIIDTAGLREASDEVEKIGIQRAWDEIEQADHVLLMIDSTEQTAEA 301 Query: 316 F-----------PKNIDFIFIGTKSDLYSTYT--EEYDHL----ISSFTGEGLEELINKI 358 F P+NI I K DL +E D +S+ T G++ L + Sbjct: 302 FKTEWADFLAKLPQNIPVTVIRNKVDLSGEAEGLQELDGFTLIRLSAQTKVGVDLLREHL 361 Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLASVSL 416 K + + + +RHL L +LE L + G +++AE LR+ +L Sbjct: 362 KKSMGYQ-SSTEGGFLARRRHLQALETAAEHLERGHIQLTQFFAG-ELLAEELRMVQNAL 419 Query: 417 GKITGCVDVEQLLDIIF 433 +ITG + LL IF Sbjct: 420 SEITGQFTSDDLLGNIF 436 >gi|332827207|gb|EGJ99981.1| tRNA modification GTPase mnmE [Dysgonomonas gadei ATCC BAA-286] Length = 463 Score = 236 bits (603), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 168/469 (35%), Positives = 258/469 (55%), Gaps = 38/469 (8%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK---KKKPFPRKASLRYFFGL--D 57 E I A+ST A I+IIRLSG C ++ EF+ K KK +KA+ +F + D Sbjct: 2 QENNIIAAISTPAGVGGIAIIRLSGKGCIELTEFVFKPLGNKKLGEQKANTIHFGYIIKD 61 Query: 58 GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 +LD+ L+ VF +P SFTGED E HG + + IL+ L LA PGEF++RA Sbjct: 62 STVLDEVLISVFKAPHSFTGEDVVEISCHGSVYIQQNILQLLIS-KGAALAQPGEFTQRA 120 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NGK+DL +AES+ADLI+S + RL+M M G S+ + +L + S IE +LD Sbjct: 121 FLNGKMDLSQAESVADLIASSSAATHRLAMNQMRGGFSNKLIELRTELLNFASLIELELD 180 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQ----GKLGEIIRNGYKIVILGHSNAGKS 233 FSEE DV+ F+++E L + + DI HI + +LG ++NG + I+G +NAGKS Sbjct: 181 FSEE-DVE-FANRERLKETAY---DIELHIRKLAESFELGNAVKNGIPVAIIGETNAGKS 235 Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293 +L N L ++ AIV+DI GTTRDV+ ++++G ++ DTAGIR+T D +E GI+RTF Sbjct: 236 TLLNLLLHEEKAIVSDIHGTTRDVIEDTINIQGLTFRLIDTAGIRDTTDEIESIGIERTF 295 Query: 294 LEVENADLILLLKEINSKKE---------ISFPKNIDFIFIGTKSDLYST-YTEEYDHLI 343 ++E A++IL + ++ + E + KN I + K D+ S + + L+ Sbjct: 296 KKIEQANIILWITDVGTADEHIRDLAEKILPAIKNQKLILVFNKVDMISAERKDNKERLL 355 Query: 344 SS------FTGEGLEELINKIKSILSNKFKKLPF-----SIPSHKRHLYHLSQTVRYLEM 392 F E+ N ++S+L K +P I ++ RH L + ++ Sbjct: 356 KEEIPDRIFISAKYEQGTNDLESLLV-KAANIPEIGEQDIIVTNMRHYAALENALTAIKR 414 Query: 393 ASLN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E D +++++R LG+ITG + +++L IF KFCIGK Sbjct: 415 VGEGLELHLSGDFLSQDIRECMHYLGEITGQISTDEILGNIFGKFCIGK 463 >gi|172062136|ref|YP_001809788.1| tRNA modification GTPase TrmE [Burkholderia ambifaria MC40-6] gi|205829123|sp|B1YQJ5|MNME_BURA4 RecName: Full=tRNA modification GTPase mnmE gi|171994653|gb|ACB65572.1| tRNA modification GTPase TrmE [Burkholderia ambifaria MC40-6] Length = 464 Score = 236 bits (603), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 155/466 (33%), Positives = 246/466 (52%), Gaps = 35/466 (7%) Query: 4 EKETIFAVSTGALPSAISIIRLS-----GPSCFQVCEFICKKKKPFPRKASLRYFFGLDG 58 + + I A++T A I ++R+S + + + +C ++ PR AS F G Sbjct: 5 DSDPIVAIATAAGRGGIGVVRVSFGRGGEAAALPLIDALCGQQLA-PRHASYVPFVDEHG 63 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEFSR 115 LD+G+ + FP+P S+TGE E HGG V+ +L+ + + LRLA PGEF+R Sbjct: 64 APLDRGIALYFPAPHSYTGEHVLELQGHGGPIVMQLLLQRCLDAGRGFGLRLAQPGEFTR 123 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF N K+DL +AE++ADLI + TE R + + G S ++ + +R +EA Sbjct: 124 RAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRQIHALVEDVITLRMLVEAT 183 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 LDF EEE + + + + ++ ++ + + G ++R G +V+ G N GKSSL Sbjct: 184 LDFPEEE-IDFLEAADARGKLARIREQLAHVLGDARQGALLREGLSVVLAGQPNVGKSSL 242 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 NALA ++AIVT I GTTRD + + +EG + I DTAG+RET+D VE+ GI RT+ E Sbjct: 243 LNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRETEDEVERIGIARTWSE 302 Query: 296 VENADLILLLKE----INSKKEI---SFPKNIDFIFIGTKSDLYST------------YT 336 +E AD++L L + + + E+ FP + + + K+DL T Sbjct: 303 IERADVVLHLLDSRTGMTADDEVIAARFPGGVPVVRVLNKTDLTGVPACVEHPAAAGDLT 362 Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS-- 394 E + +S+ G+G++ L ++ I + + + +RHL L +L A+ Sbjct: 363 EVH---LSAKRGDGIDMLRAELLRIAGWQAGAEGVYL-ARERHLIALRAAQEHLAQAADH 418 Query: 395 LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++ LD+ AE LRLA L ITG + LL +IFS+FCIGK Sbjct: 419 AEQRAQSLDLFAEELRLAQEQLNAITGEFTSDDLLGVIFSRFCIGK 464 >gi|330723738|gb|AEC46108.1| tRNA modification GTPase TrmE [Mycoplasma hyorhinis MCLD] Length = 444 Score = 236 bits (603), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 151/444 (34%), Positives = 251/444 (56%), Gaps = 10/444 (2%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64 K+TI A+++G + AISIIR+SGP F I K + + + +G ++D+ Sbjct: 3 KDTIVAIASGQVNQAISIIRISGPEAFTTVAKIFKGRVGTTSREVTYGWIHNNGELIDEV 62 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 L++ F +F GED+ E + HGG+ N ILE L P++RLA GEFSRR+F NGK+D Sbjct: 63 LVLWFKGTNNFVGEDTVEINAHGGVLNTNLILELLLSQPHVRLAERGEFSRRSFLNGKMD 122 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L++A+++ DLI + T+ Q +LS++ SG+ S + I+ L +I + IE ++D+ E +DV Sbjct: 123 LIKAQAIHDLIMARTKKQAQLSIKQFSGKTSIFINELINDLLNIIAIIEVNIDYPEYDDV 182 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + +++ +L + L I + II G K+ ++G N GKSSL NAL ++D Sbjct: 183 EVLTTEVLLPKLEALLAKFEKTIEASERSRIIFEGIKVALVGTPNVGKSSLLNALIEQDK 242 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 +IV+D+ GTTRDV+ L + K+ DTAG+R+ + +E+ GIK++ ++E A +++ Sbjct: 243 SIVSDVAGTTRDVVEASFVLSDIVFKLVDTAGVRKAKNKIEQIGIKKSLEQIEKASIVIH 302 Query: 305 LKEINSKKEISF-------PKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINK 357 + + +K+E F KN D+I + K DL + + D ++ S + + +L + Sbjct: 303 IIDA-TKQENEFDKLIQEHSKNKDYIKVYNKKDLNPSNFDASDKILISAKHKDISQLESY 361 Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGLDIIAENLRLASVSL 416 +K NK + I S+ R L + YL+ A L+ K+ DI+ +L + L Sbjct: 362 MKKHFVNKISENE-EIISNTRSLSFIKSAFSYLKDAFLSLKNGFSPDIVIVDLTQSWKDL 420 Query: 417 GKITGCVDVEQLLDIIFSKFCIGK 440 ITG + + LLD IF+ FC+GK Sbjct: 421 KTITGELTSDSLLDTIFANFCLGK 444 >gi|296273895|ref|YP_003656526.1| tRNA modification GTPase TrmE [Arcobacter nitrofigilis DSM 7299] gi|296098069|gb|ADG94019.1| tRNA modification GTPase TrmE [Arcobacter nitrofigilis DSM 7299] Length = 447 Score = 236 bits (603), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 160/449 (35%), Positives = 247/449 (55%), Gaps = 20/449 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A++T +ISIIRLSG + + K+ PR A+L + D I+D+ L Sbjct: 5 DTIAAIATANGIGSISIIRLSGKDALPLALTLSKRTNLNPRLATLSSIYNSDNEIIDEAL 64 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 LI F +P SFTGED EF HGGIA+ N IL EL K+ RLANPGEFS+RAF N KIDL Sbjct: 65 LIYFKNPNSFTGEDIVEFQCHGGIAISNIILNELIKL-GARLANPGEFSKRAFLNNKIDL 123 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++A LI + +E +L + GEL++ + L + ++ E +D++E+ D+ Sbjct: 124 SKAEAIAKLIEARSEDAVKLLARQLKGELTNFVNDIREDLLFMLAYTEVSIDYAED-DLP 182 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 + +++ I + +S + K E + G+K+ I+G N GKSSL N L D A Sbjct: 183 SDIFEQIEKKIEKIVVKLSETLESSKRREGLIEGFKVAIIGKPNVGKSSLLNKLLNFDRA 242 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 I++DI GTTRD + + + +++KI DTAGIRE D +E+ GI+++ V AD+I+ L Sbjct: 243 IISDIAGTTRDTIEESVKIGTHIIKIVDTAGIREASDTIERIGIEKSLSAVNEADIIISL 302 Query: 306 ------------KEINSKKEISFPKNIDFIFIGTKSDLYSTY--TEEYDHLISSFTGEGL 351 K +N EI +N + I + K DL S + T+ D I T + Sbjct: 303 FDNSKVCDDEDKKILNILDEI---ENKEKIIVLNKIDLESKFDKTQLKDEYIELSTKNSI 359 Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411 L+ KI++IL N ++ S KR + + QT+ +++ A L+ A N+ Sbjct: 360 STLVKKIETILDNNSHDDDMTLIS-KRQVEAVEQTLYHVQEAKTPLMTGELEFFAHNIHE 418 Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A ++ IT + +Q+LD++F FC+GK Sbjct: 419 AIENISLITRPYENDQMLDVMFGAFCLGK 447 >gi|332976009|gb|EGK12880.1| tRNA modification GTPase [Psychrobacter sp. 1501(2011)] Length = 463 Score = 236 bits (602), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 162/465 (34%), Positives = 255/465 (54%), Gaps = 36/465 (7%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A++T + IIRLSGP + + + K PR AS F+ +LD+GL Sbjct: 5 KTIAAIATPLGRGGVGIIRLSGPKAYDIACQLTGKDHFTPRLASFCRFYDDQRNVLDEGL 64 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 ++ F +P SFTGED E HGG+ + N +L + ++ A PGEFS RAFEN K+DL Sbjct: 65 VLYFKAPYSFTGEDVIELQGHGGMILQNQLLARVFEL-GAHQAQPGEFSYRAFENDKLDL 123 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 L+AE++AD I + + ++ ++GE S+ ++ L +R ++EA +DF +EEDV Sbjct: 124 LQAEAIADAIDATSAAAASSAIRSLTGEFSNKINDILEALIELRLYVEASIDFPDEEDVD 183 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S + + + +++ + + ++ + G+++R+G +V+ G NAGKSSL N+LA ++ A Sbjct: 184 FLSDGVIESKLSRIQDRLKTILATAQQGQLLRDGVHVVLAGRPNAGKSSLLNSLAGQERA 243 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTD+ GTTRD L + L G + ++DTAG+R+T D VE+ GI+R + ADL+LL+ Sbjct: 244 IVTDVAGTTRDTLQETIVLNGLTIHLTDTAGLRDTTDAVERIGIERARTAIHQADLLLLV 303 Query: 306 KEINSKKE------------ISFPKNID---FIFIGTKSDLYSTYTEE----------YD 340 +++ + S N D + IG K DL + Y+ Sbjct: 304 HDLSKQANPLELATELFGTTASGTPNFDPAKLLLIGNKRDLVEQQQSQNLSDKVDVSGYE 363 Query: 341 HL-ISSFTGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMASLN- 396 + +S T EG++ LI + L +K F S+ + RHL L +T ++L A L Sbjct: 364 QVNVSCETSEGIDCLI----ATLCDKVGFHPPENSLIARTRHLDALRRTQQHLNDAHLQL 419 Query: 397 -EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E G +++AE+LR SLG+ITG + LL IF FCIGK Sbjct: 420 VEYQAG-ELVAESLRQGQYSLGEITGEFSADDLLGRIFGSFCIGK 463 >gi|205829166|sp|Q0BAQ4|MNME_BURCM RecName: Full=tRNA modification GTPase mnmE Length = 464 Score = 236 bits (602), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 155/466 (33%), Positives = 246/466 (52%), Gaps = 35/466 (7%) Query: 4 EKETIFAVSTGALPSAISIIRLS-----GPSCFQVCEFICKKKKPFPRKASLRYFFGLDG 58 + + I A++T A I ++R+S + + + +C ++ PR AS F G Sbjct: 5 DSDPIVAIATAAGRGGIGVVRVSFGRGGEAAALPLIDALCGQRLA-PRHASYVPFVDEHG 63 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEFSR 115 LD+G+ + FP+P S+TGE E HGG V+ +L+ + + LRLA PGEF+R Sbjct: 64 APLDRGIALYFPAPHSYTGEHVLELQGHGGPIVMQLLLQRCLDAGRGFGLRLAQPGEFTR 123 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF N K+DL +AE++ADLI + TE R + + G S ++ + +R +EA Sbjct: 124 RAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRQIHALVEDVITLRMLVEAT 183 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 LDF EEE + + + + ++ ++ + + G ++R G +V+ G N GKSSL Sbjct: 184 LDFPEEE-IDFLEAADARGKLAKIREQLAHVLGDARQGALLREGLSVVLAGQPNVGKSSL 242 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 NALA ++AIVT I GTTRD + + +EG + I DTAG+RET+D VE+ GI RT+ E Sbjct: 243 LNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRETEDEVERIGIARTWSE 302 Query: 296 VENADLILLLKE----INSKKEI---SFPKNIDFIFIGTKSDLYST------------YT 336 +E AD++L L + + + E+ FP + + + K+DL T Sbjct: 303 IERADVVLHLLDSRTGMTADDEVIAARFPGGVPVVRVLNKTDLTGVPACVEHPAAAGDLT 362 Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS-- 394 E + +S+ G+G++ L ++ I + + + +RHL L +L A+ Sbjct: 363 EVH---LSAKRGDGIDMLRAELLRIAGWQAGAEGVYL-ARERHLIALRAAQEHLAQAADH 418 Query: 395 LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++ LD+ AE LRLA L ITG + LL +IFS+FCIGK Sbjct: 419 AEQRAQSLDLFAEELRLAQEQLNAITGEFTSDDLLGVIFSRFCIGK 464 >gi|323527917|ref|YP_004230070.1| tRNA modification GTPase TrmE [Burkholderia sp. CCGE1001] gi|323384919|gb|ADX57010.1| tRNA modification GTPase TrmE [Burkholderia sp. CCGE1001] Length = 464 Score = 236 bits (602), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 154/465 (33%), Positives = 246/465 (52%), Gaps = 27/465 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLS----GPSCFQVCEFICKKKKPFPRKASLRYFFGL 56 + + + I A++T I ++R+S G + + PR AS F Sbjct: 2 LTTDSDPIVAIATAPGRGGIGVVRISFGRAGEAAAPPLMQALTGQTLAPRHASYVPFLDG 61 Query: 57 DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEF 113 G LD+G+ + FP+P S+TGE E HGG V+ +L+ + + LRLA PGEF Sbjct: 62 SGNALDRGIALYFPAPHSYTGEHVLELQGHGGPVVLQLLLQRCIDAGRAFGLRLAEPGEF 121 Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173 +RRAF N K+DL +AE++ADLI + TE R + + G S ++++ +R +E Sbjct: 122 TRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLEGAFSRDIHALVEEVITLRMLVE 181 Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233 A LDF EEE + + + + ++ ++S +++ + G ++R G +V+ G N GKS Sbjct: 182 ATLDFPEEE-IDFLEAADARGKLARIRERLASVLTEARQGALLREGLSVVLAGQPNVGKS 240 Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293 SL NALA ++AIVT I GTTRD + + +EG + + DTAG+R+T+D VEK GI RT+ Sbjct: 241 SLLNALAGAELAIVTPIAGTTRDKVAQTIQIEGIPLHVIDTAGLRDTEDEVEKIGIARTW 300 Query: 294 LEVENADLILLLKE----INSKKEI---SFPKNIDFIFIGTKSDLYSTYTE------EYD 340 E+E AD++L L + + ++ E FP + + + K+DL E ++D Sbjct: 301 SEIERADVVLHLLDARTGMTAEDETIARRFPAGVPVVRVLNKTDLVGLPPETRALDADFD 360 Query: 341 H---LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--L 395 +S+ G+G+ L ++ I + + + +RHL L +L A+ Sbjct: 361 LSEVRLSAKQGDGVGLLRGELLRIAGWQAGAESVYL-ARERHLIALRAAEEHLATAAAHA 419 Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++ LD+ AE LRLA L ITG + LL +IFS+FCIGK Sbjct: 420 DQNSQALDLFAEELRLAQDQLNSITGEFSSDDLLGVIFSRFCIGK 464 >gi|304373365|ref|YP_003856574.1| tRNA modification GTPase mnmE [Mycoplasma hyorhinis HUB-1] gi|304309556|gb|ADM22036.1| tRNA modification GTPase mnmE [Mycoplasma hyorhinis HUB-1] Length = 444 Score = 236 bits (602), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 151/444 (34%), Positives = 251/444 (56%), Gaps = 10/444 (2%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64 K+TI A+++G + AISIIR+SGP F I K + + + +G ++D+ Sbjct: 3 KDTIVAIASGQVNQAISIIRISGPEAFATVAKIFKGRVGTTSREVTYGWIHNNGELIDEV 62 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 L++ F +F GED+ E + HGG+ N ILE L P++RLA GEFSRR+F NGK+D Sbjct: 63 LVLWFKGTNNFVGEDTVEINAHGGVLNTNLILELLLSQPHVRLAERGEFSRRSFLNGKMD 122 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L++A+++ DLI + T+ Q +LS++ SG+ S + I+ L +I + IE ++D+ E +DV Sbjct: 123 LIKAQAIHDLIMARTKKQAQLSIKQFSGKTSIFINELINDLLNIIAIIEVNIDYPEYDDV 182 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + +++ +L + L I + II G K+ ++G N GKSSL NAL ++D Sbjct: 183 EVLTTEVLLPKLEALLAKFEKTIEASERSRIIFEGIKVALVGTPNVGKSSLLNALIEQDK 242 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 +IV+D+ GTTRDV+ L + K+ DTAG+R+ + +E+ GIK++ ++E A +++ Sbjct: 243 SIVSDVAGTTRDVVEASFVLSDIVFKLVDTAGVRKAKNKIEQIGIKKSLEQIEKASIVIH 302 Query: 305 LKEINSKKEISF-------PKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINK 357 + + +K+E F KN D+I + K DL + + D ++ S + + +L + Sbjct: 303 IIDA-TKQENEFDKLIQEHSKNKDYIKVYNKKDLNPSNFDASDKILISAKHKDISQLESY 361 Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGLDIIAENLRLASVSL 416 +K NK + I S+ R L + YL+ A L+ K+ DI+ +L + L Sbjct: 362 MKKHFVNKISENE-EIISNTRSLSFIKSAFSYLKDAFLSLKNGFSPDIVIVDLTQSWKDL 420 Query: 417 GKITGCVDVEQLLDIIFSKFCIGK 440 ITG + + LLD IF+ FC+GK Sbjct: 421 KTITGELTSDSLLDTIFANFCLGK 444 >gi|157412546|ref|YP_001483412.1| tRNA modification GTPase TrmE [Prochlorococcus marinus str. MIT 9215] gi|166991113|sp|A8G2J5|MNME_PROM2 RecName: Full=tRNA modification GTPase mnmE gi|157387121|gb|ABV49826.1| putative thiophen / furan oxidation protein [Prochlorococcus marinus str. MIT 9215] Length = 460 Score = 236 bits (602), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 170/447 (38%), Positives = 242/447 (54%), Gaps = 35/447 (7%) Query: 19 AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DGRILDKGLLIVFPSPE 73 ++IIR+SG C+ I + K + + S R F G + +D+ L+ V SP Sbjct: 24 GVAIIRVSGKDSINSCKKIVQTKSKYAWE-SHRVFHGFIQENKQNKFIDEVLISVMKSPN 82 Query: 74 SFTGEDSAEFHVHGGIAVVNGILE-ELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLA 132 SFTGED E H HGGI +VN +L+ L+ +RLANPGEFS+RAF NGKIDL +AES+ Sbjct: 83 SFTGEDVVELHCHGGIIIVNKVLKILLSSNSRVRLANPGEFSQRAFLNGKIDLTQAESIN 142 Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192 LI++ L+ G+ GE+ + L + IEA +DF EED +F + Sbjct: 143 QLINASNTRSAELAFSGIQGEIKKKINDIKNDLINQLCEIEARVDF--EEDFTDFDYTKY 200 Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252 L +I +K I I K I NG I ++G +N GKSSL N LAKK+ AIVT+IPG Sbjct: 201 LKNIKKVKEKIELLIENAKRNSYIHNGISIALIGKTNVGKSSLLNLLAKKEKAIVTNIPG 260 Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI---- 308 TTRDV+ I+L + +KI DTAGIRET + +E+ GIK++F +++ +D I+ + + Sbjct: 261 TTRDVIEINLTINDIPMKIIDTAGIRETSEQIERIGIKKSFRKIKESDFIIYIYSLEEGF 320 Query: 309 --NSKKEIS-FPKNIDFIFIGTKSDLYSTYTEEYDH-----LISSFTGEGLEELINKIKS 360 KK I PK +G K DL + L+S +G LI+ I Sbjct: 321 NEEDKKIIQEIPKEKLITILGNKKDLIDCKNINSNELKNTILMSIKNNDGERLLIDTI-- 378 Query: 361 ILSNKFKKLP-FSIPSHKRHLYHLSQTVRYLEMASLNEKD------CGLDIIAENLRLAS 413 I K++ +I ++RHL +LS +++LN+ D D+++ LR Sbjct: 379 IKKCGLKQVENINIFLNERHLANLSAC-----LSNLNDTDEIIKNKLPFDLLSIELRDGI 433 Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440 +L KITG E+LLD IFSKFCIGK Sbjct: 434 QNLSKITGQELTEELLDNIFSKFCIGK 460 >gi|150019907|ref|YP_001312161.1| tRNA modification GTPase TrmE [Clostridium beijerinckii NCIMB 8052] gi|189036196|sp|A6M3M5|MNME_CLOB8 RecName: Full=tRNA modification GTPase mnmE gi|149906372|gb|ABR37205.1| tRNA modification GTPase TrmE [Clostridium beijerinckii NCIMB 8052] Length = 462 Score = 236 bits (602), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 160/470 (34%), Positives = 273/470 (58%), Gaps = 41/470 (8%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGLD- 57 E +TI A++T +SIIR+SG + ++ I + + + +++Y +D Sbjct: 2 KEFDTICAIATPIGEGGVSIIRISGENVLKIASKIFTPRNKYDIESMKTYTMKYGNIVDL 61 Query: 58 ---GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114 I+D+ +L +P S+TGE+ E + HGG+ N +L+++ K RLA PGEF+ Sbjct: 62 ENKKEIIDEVILSYMKAPRSYTGENVVEINCHGGVISTNSVLDQVIK-AGARLAEPGEFT 120 Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174 +RAF NG+IDL +AE++ D+I+++TE+ + +M G LS + L ++ + IE Sbjct: 121 KRAFLNGRIDLSQAEAVMDIITAKTELSMKAAMIQSKGALSKEINELRGYLLNVLALIEY 180 Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLK---------NDISSHISQGKLGEIIRNGYKIVIL 225 +DF+E+++ ++++D L L+ + I + +S G+I+R+G IVI+ Sbjct: 181 AVDFTEDDE-------DIVDDNLILQIKDGIENTNSKIETLLSNADAGKIVRDGLNIVIV 233 Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVE 285 G N GKSSL NAL +++ AIVTD+PGTTRD++ ++L+G VKI+DTAGIR+T+D+VE Sbjct: 234 GKPNVGKSSLLNALLRENRAIVTDVPGTTRDIIEEYINLDGIPVKITDTAGIRDTEDVVE 293 Query: 286 KEGIKRTFLEVENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEE- 338 K G++++ ++E ADLI+L+ + + + I+ KN +I + K DL +E Sbjct: 294 KIGVEKSKEKIEEADLIILMLDASRYIDEEDSRIINKIKNRKYIVLLNKMDLKDIKIQEE 353 Query: 339 -YDHL-----ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM 392 +L IS+ TG+G++ L +++K + N I S+ RH L +++ +M Sbjct: 354 ILKNLSNIINISAKTGQGIDILKDEVKKLFFNGEISSESLIISNARHKQALYKSLENCKM 413 Query: 393 A--SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A +N + LD+I+ + A +LG+ITG E LL+ IFS+FC+GK Sbjct: 414 ALDKINANEY-LDLISIYITAAMKALGEITGDELEEDLLNKIFSEFCVGK 462 >gi|218437570|ref|YP_002375899.1| tRNA modification GTPase TrmE [Cyanothece sp. PCC 7424] gi|218170298|gb|ACK69031.1| tRNA modification GTPase TrmE [Cyanothece sp. PCC 7424] Length = 458 Score = 236 bits (602), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 169/464 (36%), Positives = 254/464 (54%), Gaps = 41/464 (8%) Query: 6 ETIFAVSTGALPS--AISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL----D 57 ETI A++T +P +I I+RLSG + F K+ + S R +G Sbjct: 7 ETIAAIATAIVPQQGSIGIVRLSGAKALDIARTLFHAPGKQVW---ESHRILYGYIRHPQ 63 Query: 58 GRIL-DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 +IL D+ LL++ +P S+T ED EFH HGGI V +L+ L RLA PGEF+ R Sbjct: 64 SQILIDEALLLLMFAPRSYTKEDVIEFHCHGGIIPVQQVLQ-LCLEQGARLAQPGEFTLR 122 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NG+IDL +AES+A+L++S++ ++++ G+ G+L+ Q I + +EA + Sbjct: 123 AFLNGRIDLTKAESVAELVNSQSVQASQVALAGLEGKLAHPIRQLRSTCLDILAEVEARI 182 Query: 177 DFSE------EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNA 230 DF E EED+ K+ L ++L N I ++ + GE++RNG K+ I+G N Sbjct: 183 DFEEDLPPLDEEDI-----KQRLTEVLVEVNQI---LATAERGELLRNGLKVAIVGRPNV 234 Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIK 290 GKSSL NA ++ D AIVTD+PGTTRDV+ L + G +++ DTAGIRET D VEK G++ Sbjct: 235 GKSSLLNAWSRSDRAIVTDLPGTTRDVVESQLVVGGIPIQVLDTAGIRETQDRVEKIGVE 294 Query: 291 RTFLEVENADLILLLKEINS-----KKEI-SFPKNIDFIFIGTKSDLYST----YTEEYD 340 R+ + ADLILL + + +EI K+ I I K+DL S Y E Sbjct: 295 RSRQAAQRADLILLTIDAQTGWTGEDEEIYQQVKHRPLILIINKTDLASADTINYPWEIT 354 Query: 341 HLISSFTG--EGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE 397 ++++ EG+E+L I S+ + K ++R L++T LE Sbjct: 355 QIVTTVAAKSEGIEDLEQMILNSVQAGKLTGANLEFAINQRQAAALTRTSVALEQVQDTI 414 Query: 398 KD-CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 K+ LD +LR A +LG++TG E +L+ +FS+FCIGK Sbjct: 415 KNQLPLDFWTIDLRSAIQALGEVTGEEVTESILNRVFSRFCIGK 458 >gi|259148601|emb|CAY81846.1| Mss1p [Saccharomyces cerevisiae EC1118] Length = 526 Score = 236 bits (602), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 178/497 (35%), Positives = 262/497 (52%), Gaps = 65/497 (13%) Query: 4 EKETIFAVSTGA-LPSAISIIRLSGPSC-FQVCEFICKKKKPFPRKASLRYFFGLDGR-- 59 ++ TI+A+ST A SAI+IIR+SG + + P RKA LR + Sbjct: 35 QQPTIYALSTPANQTSAIAIIRISGTHAKYIYNRLVDSSTVPPIRKAILRNIYSPSSCSV 94 Query: 60 ----------ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKM------P 103 +LD LL+ F +P SFTGED E HVHGG AVVN IL+ + + Sbjct: 95 KPHDQKESKILLDTSLLLYFQAPYSFTGEDVLELHVHGGKAVVNSILKAIGSLHDRSSGK 154 Query: 104 NLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWID 163 ++R A PG+FSRRAF+NGK DL + E + DLI SETE QRR ++ +G+ L+ W + Sbjct: 155 DIRFALPGDFSRRAFQNGKFDLTQLEGIKDLIDSETESQRRSALSSFNGDNKILFENWRE 214 Query: 164 KLTHIRSFIEADLDFSEEEDVQNFSSKEVLND----ILFLKNDISSHISQGKLGEIIRNG 219 + + + A +DF+++ + ++ E+ +D I+ L++ I + + + + I++NG Sbjct: 215 TIIENMAQLTAIIDFADDNSQEIQNTDEIFHDVEKNIICLRDQIVTFMQKVEKSTILQNG 274 Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 K+V+LG N GKSSL N+L D++IV+DIPGTTRD + +++ GY V I DTAGIRE Sbjct: 275 IKLVLLGAPNVGKSSLVNSLTNDDISIVSDIPGTTRDSIDAMINVNGYKVIICDTAGIRE 334 Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNI------------DFIFIG 326 + D +E GI R + +DL L + + ++ P++I I + Sbjct: 335 KSSDKIEMLGIDRAKKKSVQSDLCLFIVDPTDLSKL-LPEDILAHLSSKTFGNKRIIIVV 393 Query: 327 TKSDLYST--YTEEYDHL------------ISSFTGEGLEELINKIKSILSNKFKKLPFS 372 KSDL S T+ + L +S T EG+E LI S L++ F+ L S Sbjct: 394 NKSDLVSDDEMTKVLNKLQTRLGSKYPILSVSCKTKEGIESLI----STLTSNFESLSQS 449 Query: 373 ------IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDII--AENLRLASVSLGKITG-CV 423 + KR L V Y KD DI+ ENLR AS + KITG + Sbjct: 450 SADASPVIVSKRVSEILKNDVLYGLEEFFKSKDFHNDIVLATENLRYASDGIAKITGQAI 509 Query: 424 DVEQLLDIIFSKFCIGK 440 +E++LD +FSKFCIGK Sbjct: 510 GIEEILDSVFSKFCIGK 526 >gi|254582943|ref|XP_002499203.1| ZYRO0E06446p [Zygosaccharomyces rouxii] gi|238942777|emb|CAR30948.1| ZYRO0E06446p [Zygosaccharomyces rouxii] Length = 506 Score = 236 bits (601), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 160/484 (33%), Positives = 265/484 (54%), Gaps = 54/484 (11%) Query: 7 TIFAVSTG-ALPSAISIIRLSGP-SCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64 TI+A+ST SAI+++R+SG S + + +KK R+ LR +G +LDK Sbjct: 27 TIYALSTAPGTKSAIAVVRISGTHSKYVYHQLNNSEKKLIHRRTLLRNLYGPGKNLLDKA 86 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN------LRLANPGEFSRRAF 118 L + F SP+S+TGED E H+HGG AV +L + + + +R A PGEF++RAF Sbjct: 87 LTLFFDSPKSYTGEDLLELHIHGGKAVTGSVLNAIGSLNDRNSGIEIRYALPGEFTQRAF 146 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 +NGKIDL+E E + +LI +ETE QRR ++ +G +L+ W DK+ + + + A +DF Sbjct: 147 QNGKIDLIEVEGIRELIDAETETQRRCALSSFNGMNKNLFMLWRDKIVNNIAQLTAIIDF 206 Query: 179 SEEEDVQNFSS--KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 E+ ++++ ++ + V ++++ LK +I+ I + + I+++G K+V+LG NAGKSSL Sbjct: 207 GEDTEIEDTNNLLQLVKHNMVQLKQEINQFIQKIEKTSILQSGVKVVLLGPPNAGKSSLI 266 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLE 295 N+++ DV+I++ PGTTRD + +D+ GY V ISDTAGIR + D +E GI+R + Sbjct: 267 NSISNDDVSIISHTPGTTRDTVEASIDVNGYKVTISDTAGIRSHSSDEIELLGIERAIKK 326 Query: 296 VENADLILLLKEINSKKEIS----------FPKNIDFIFIGTKSDLYSTYTEE---YDHL 342 E DL LL+ + +K I+ + + +F+ I K DL + + D L Sbjct: 327 SEQCDLCLLIVDPLNKPLINEDLTQMIQSMYKEGKEFVIIVNKQDLLTDENQSKSVMDAL 386 Query: 343 ------------ISSFTGEGLEELINKIKSILSNKFKKL--------PFSIPSHKRHLYH 382 +S T EG+E L+ ++ I F++L P + + H Sbjct: 387 REKFGDKFPIITVSCKTQEGIEPLVKQLTQI----FQRLSETSDESDPIIASRRVKEILH 442 Query: 383 LSQTVRYLEMASLNEKDCGLD-----IIAENLRLASVSLGKITG-CVDVEQLLDIIFSKF 436 + + G D + +E+L A+ +GKITG V +E++L ++F+ F Sbjct: 443 SDVLYGIDSFFVTTDSEIGGDSYDVVMASEHLSHAADGIGKITGDAVGIEEVLGVVFANF 502 Query: 437 CIGK 440 C+GK Sbjct: 503 CVGK 506 >gi|301311540|ref|ZP_07217467.1| tRNA modification GTPase TrmE [Bacteroides sp. 20_3] gi|300830626|gb|EFK61269.1| tRNA modification GTPase TrmE [Bacteroides sp. 20_3] Length = 461 Score = 236 bits (601), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 158/464 (34%), Positives = 252/464 (54%), Gaps = 35/464 (7%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP-----FPRKASLRY--FFGLDGR 59 TI A+ST I++IR+SGP F++C+ I + KK + +L Y G + Sbjct: 3 TICAISTAPGVGGIAVIRVSGPDAFKICDRIFRPKKAGKSLSTQKAYTLTYGSIVGNNDE 62 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 +D+ + VF +P SFTGED+ E HG + IL+ L R+A PGE+++RAF Sbjct: 63 TIDEVIAAVFRAPHSFTGEDTVEITCHGSTYIQQQILQSLIS-SGCRIAQPGEYTQRAFM 121 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NGK+DL +AE++ADLI+S + Q RL++ M G S + ++L H S +E +LDFS Sbjct: 122 NGKMDLSQAEAVADLIASTSAGQHRLALSQMRGGFSRELAELRNQLLHFTSLMELELDFS 181 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQG-KLGEIIRNGYKIVILGHSNAGKSSLFNA 238 + E+++ F+ + L + + S ++Q +G I+NG + I+G +NAGKS+L NA Sbjct: 182 DHEELE-FADRSELRTLADHIEQVISKLAQSFSVGNAIKNGIPVAIIGETNAGKSTLLNA 240 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L +D AIV+DI GTTRDV+ +++ G L + DTAGIRET D +E GI+R+F ++ Sbjct: 241 LLNEDKAIVSDIHGTTRDVIEDTININGQLFRFIDTAGIRETSDTIEALGIERSFKALDQ 300 Query: 299 ADLILLLKEINSK--------KEISFPK--NIDFIFIGTKSDL--------YSTYTEEYD 340 A +++L+ ++ +EI+ P+ N I K D+ +S TE + Sbjct: 301 AQIVILMYDLTRDLKDFEAFYQEIA-PRLTNKSVILAMNKCDVLPTSSLPTFSFPTEGWH 359 Query: 341 HLISSFTGE----GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396 + S G+ L++L+ ++ SI + + + H L H + + ++ LN Sbjct: 360 QIAISAKGKLHIAELQQLLTEVSSIPTLHQSDIIVTNARHFEALTHALEAIHRVQ-EGLN 418 Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G D I+++LR L I G V +Q+L IF FCIGK Sbjct: 419 SSLSG-DFISQDLRECIFHLSDIVGEVTTDQVLGNIFQHFCIGK 461 >gi|172039509|ref|YP_001806010.1| tRNA modification GTPase TrmE [Cyanothece sp. ATCC 51142] gi|171700963|gb|ACB53944.1| tRNA modification GTPase [Cyanothece sp. ATCC 51142] Length = 460 Score = 236 bits (601), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 169/469 (36%), Positives = 257/469 (54%), Gaps = 41/469 (8%) Query: 1 MNHEKETIFAVSTGALPS--AISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL 56 M + ETI A++T +P +I IIRLSG + + FI K+ + S R +G Sbjct: 4 MITQGETIAAIATAIVPQQGSIGIIRLSGNKALNIAQTLFIAPGKQKW---ESHRILYGY 60 Query: 57 -----DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPG 111 +++D+ LL++ +P S+T ED EFH HGGI V +L+ L LA PG Sbjct: 61 IRHPQTEQVIDEALLLMMLAPRSYTREDVIEFHCHGGIMPVQQVLQ-LCLEQGAILAQPG 119 Query: 112 EFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTH---- 167 EF+ RAF NG+IDL +AES+ +L+S+ ++ ++++ G+ G+L+ Q I L H Sbjct: 120 EFTLRAFLNGRIDLTQAESIRELVSARSQQASQMALAGLQGKLA----QPIQTLRHHCLD 175 Query: 168 IRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227 I + IEA +DF EED+ + + + S ++ + GE++RNG K+ I+G Sbjct: 176 ILAEIEARIDF--EEDLPPLDENAISQGLKSILEQFESILNTAEQGELLRNGLKVAIVGR 233 Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKE 287 N GKSSL NA ++ D AIVTD+PGTTRDV+ L + G +++ DTAGIR+T D VEK Sbjct: 234 PNVGKSSLLNAWSRSDRAIVTDLPGTTRDVVESQLVVGGIPIQVLDTAGIRQTTDQVEKI 293 Query: 288 GIKRTFLEVENADLILL-----LKEINSKKEISFP-KNIDFIFIGTKSDL----YSTYTE 337 G++R+ L ADL+LL + + EI P +++ I + K DL S + Sbjct: 294 GVERSRLAASQADLVLLTIDATVGWTSQDSEIYQPIRHLPVILVINKIDLATPNLSQFPP 353 Query: 338 EYDHLI--SSFTGEGLEELINKI-KSILSNKF--KKLPFSIPSHKRHLYHLSQTVRYLEM 392 E ++ S+ +G+E L I K+I K L F+I ++R L++ L+ Sbjct: 354 EITEIVKTSAANHQGIEALEAAILKAINQQKLTANNLDFAI--NQRQSAALTRAKIALQQ 411 Query: 393 ASLN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + +D LD +LR A +LG+ITG E +LD IFS+FCIGK Sbjct: 412 VQITIAEDLPLDFWTIDLRSAIQALGEITGEEITESVLDKIFSRFCIGK 460 >gi|187777372|ref|ZP_02993845.1| hypothetical protein CLOSPO_00928 [Clostridium sporogenes ATCC 15579] gi|187774300|gb|EDU38102.1| hypothetical protein CLOSPO_00928 [Clostridium sporogenes ATCC 15579] Length = 461 Score = 236 bits (601), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 166/469 (35%), Positives = 264/469 (56%), Gaps = 42/469 (8%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--------KPFPRKASLRYFFG 55 E +TI AV+T ISIIR+SG + I + K KP+ S+RY F Sbjct: 3 EFDTIAAVATPLGEGGISIIRISGDKSLDIVSSIFRGKNDRLLDDIKPY----SMRYGFI 58 Query: 56 LDGR---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGE 112 ++ I+D+ L+ P SFT ED+ E + HGG+ IL+EL K RLA PGE Sbjct: 59 IEKESKEIIDEVLVSYMKGPRSFTAEDTLEINCHGGVIPTKKILKELIK-SGARLAEPGE 117 Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172 F++RAF NG+IDL +AE++ D+I S+T++ + +++ G LS +K+ I + I Sbjct: 118 FTKRAFLNGRIDLSQAEAVIDIIRSKTDLSMKSALKQAEGTLSKEINSIRNKMIKIIAHI 177 Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232 EA +D+ E+ D++ + +++ D+ + N I + IS + G+I+R G VI+G N GK Sbjct: 178 EATVDYPED-DLEEITGQKIKVDLKEIINKIDNLISASEEGKILREGLNTVIVGKPNVGK 236 Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292 SSL NAL ++ AIVT+IPGTTRDV+ ++++G +KI DTAGIRET+D+VEK G++++ Sbjct: 237 SSLLNALINENKAIVTEIPGTTRDVIEEYINIDGIPIKIVDTAGIRETEDVVEKIGVEKS 296 Query: 293 FLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF 346 ++ ADL++ + +++ K + ++F KN +I + KSDL EE +H I Sbjct: 297 KEKIAEADLVIFMLDLSRKIDEEDIEIMNFIKNKKYIVLLNKSDLNKDLNEE-NHFIKGL 355 Query: 347 -----------TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT----VRYLE 391 GL EL IK + + K I ++ RH L ++ ++ +E Sbjct: 356 DSKYIIRTSVKNNSGLNELKECIKDLFFSGEIKSDEIIVTNARHQEALIRSKESCIQAIE 415 Query: 392 MASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 S + +D+ + ++R A LG+ITG E ++D IFS+FC+GK Sbjct: 416 TLS---DEISIDLASIDIRNAWKYLGEITGDTLDENIIDKIFSEFCLGK 461 >gi|289667654|ref|ZP_06488729.1| tRNA modification GTPase TrmE [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 446 Score = 236 bits (601), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 153/450 (34%), Positives = 247/450 (54%), Gaps = 14/450 (3%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+ TI A+++ A + I+RLSGP Q+ + + PR A F G + Sbjct: 1 MSSSSSTIVAIASAAGIGGVGIVRLSGPQSVQIVAQLGIARLQ-PRHAHYARFRDAQGAV 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D G+ + F +P SFTGED E HG ++ ++ ++ R A GEFS RAF N Sbjct: 60 VDDGIALWFNAPHSFTGEDVVELQGHGSPVLLRQLVARCIEL-GARQARAGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GK+DL +AE++ADLI++ R + + G S D LT +R +EA +DF++ Sbjct: 119 GKLDLAQAEAIADLIAAGDLRAARAARRALDGVFSRRVDAVADTLTRLRIHVEAAIDFAD 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E + +V + + + ++ + + G +R+G V++G NAGKSSL NALA Sbjct: 179 EP-LDTLGGNQVRDGLTQARTLLAQLLRDAERGRKLRDGLHAVLIGPPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 D AIVTD+ GTTRD L + L+G+ + + DTAG+RE D +E+EG++R E+E AD Sbjct: 238 GSDRAIVTDVAGTTRDTLHEAIQLDGFELTLVDTAGLREGGDAIEREGMRRARAELERAD 297 Query: 301 LILLL---KEINSKKEISFPKNIDFI----FIGTKSDLYSTYT--EEYDHLISSFTGEGL 351 L L++ ++ + +E + ID + +I K DL S + ++S+ TG+GL Sbjct: 298 LALVVLDARDPQAARE-AIGDAIDAVPRQLWIHNKCDLLSDAVPLDANAIVVSAVTGQGL 356 Query: 352 EELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLR 410 E+L +++ + L + + + + RH+ L + +++++A L L++ AE LR Sbjct: 357 EQLHIRLRELALGDGVESVDGEFFARTRHVEALRRAEQHVDIADLELGFEQLELAAEELR 416 Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LA +LG+ITG + + LL IFS FCIGK Sbjct: 417 LAHEALGEITGKISADDLLGKIFSSFCIGK 446 >gi|151946184|gb|EDN64415.1| mitochondrial splicing system relatd protein [Saccharomyces cerevisiae YJM789] Length = 526 Score = 236 bits (601), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 179/497 (36%), Positives = 263/497 (52%), Gaps = 65/497 (13%) Query: 4 EKETIFAVSTGA-LPSAISIIRLSGPSC-FQVCEFICKKKKPFPRKASLRYFFGLDGR-- 59 ++ TI+A+ST A SAI+IIR+SG + + P RKA LR + Sbjct: 35 QQPTIYALSTPANQTSAIAIIRISGTHAKYIYNRLVDSSTVPPIRKAILRNIYSPSSCSV 94 Query: 60 ----------ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKM------P 103 +LD LL+ F +P SFTGED E HVHGG AVVN IL+ + + Sbjct: 95 KPHDQKESKILLDTSLLLYFQAPYSFTGEDVLELHVHGGKAVVNSILKAIGSLHDRSSGK 154 Query: 104 NLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWID 163 ++R A PG+FSRRAF+NGK DL + E + DLI SETE QRR ++ +G+ L+ W + Sbjct: 155 DIRFALPGDFSRRAFQNGKFDLTQLEGIKDLIDSETESQRRSALSSFNGDNKILFENWRE 214 Query: 164 KLTHIRSFIEADLDFSEE--EDVQNFSS--KEVLNDILFLKNDISSHISQGKLGEIIRNG 219 + + + A +DF+++ +++QN V +I+ L++ I + + + + I++NG Sbjct: 215 TIIENMAQLTAIIDFADDNSQEIQNTDEIFHNVEKNIICLRDQIVTFMQKVEKSTILQNG 274 Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 K+V+LG N GKSSL N+L D++IV+DIPGTTRD + +++ GY V I DTAGIRE Sbjct: 275 IKLVLLGAPNVGKSSLVNSLTNDDISIVSDIPGTTRDSIDAMINVNGYKVIICDTAGIRE 334 Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNI------------DFIFIG 326 + D +E GI+R + +DL L + + ++ P++I I + Sbjct: 335 KSSDKIEMLGIERAKKKSVQSDLCLFIVDPTDLSKL-LPEDILAHLSSKTFGNKRIIIVV 393 Query: 327 TKSDLYST--YTEEYDHL------------ISSFTGEGLEELINKIKSILSNKFKKLPFS 372 KSDL S T+ + L +S T EG+E LI S L++ F+ L S Sbjct: 394 NKSDLVSDDEMTKVLNKLQTRLGSKYPILSVSCKTKEGIESLI----STLTSNFESLSQS 449 Query: 373 ------IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDII--AENLRLASVSLGKITG-CV 423 + KR L V Y KD DI+ ENLR AS + KITG + Sbjct: 450 SADASPVIVSKRVSEILKNDVLYGLEEFFKSKDFHNDIVLATENLRYASDGIAKITGQAI 509 Query: 424 DVEQLLDIIFSKFCIGK 440 +E++LD +FSKFCIGK Sbjct: 510 GIEEILDSVFSKFCIGK 526 >gi|124269008|ref|YP_001023012.1| tRNA modification GTPase TrmE [Methylibium petroleiphilum PM1] gi|124261783|gb|ABM96777.1| putative thiophene and furan oxidation protein [Methylibium petroleiphilum PM1] Length = 480 Score = 236 bits (601), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 151/472 (31%), Positives = 237/472 (50%), Gaps = 35/472 (7%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 + + I A++T A+ I+R+SG + E +C + PR A F G Sbjct: 12 LPRHHDPIVAIATAPGRGAVGIVRVSGRGLGALIEAVCGRALQ-PRHAHYGPFLDAQGEA 70 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGG-------------IAVVNGILEELAKMPNLRL 107 +D+GL + FP+P S+TGE+ E HGG A L ++ LR+ Sbjct: 71 IDQGLALHFPAPHSYTGEEVLELQAHGGPVLLQLLLARCLEAAAQPDARSGLPRLRGLRV 130 Query: 108 ANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTH 167 A PGEF+ RAF N K+DL +AE++ADLI + TE R + ++G S D+L Sbjct: 131 AEPGEFTERAFLNDKLDLAQAEAVADLIDASTEAAARSAGRALAGAFSQQVDTLRDRLIE 190 Query: 168 IRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227 +R +EA LDF EEE + + + + + + +++ K G ++R G ++V+ G Sbjct: 191 LRMLVEATLDFPEEE-IDFLEKADARGRLARIAEALDAVLARAKQGALLREGLRVVLAGQ 249 Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---V 284 N GKSSL NALA ++AIVT I GTTRD + + +EG + + DTAG+R DD V Sbjct: 250 PNVGKSSLLNALAGAELAIVTPIAGTTRDKVAETIQIEGVPLHVVDTAGLRAEDDARDEV 309 Query: 285 EKEGIKRTFLEVENADLILLLKEINSKKEISF-----------PKNIDFIFIGTKSDLYS 333 E+ G++R++ + AD ++ L ++ + + P + + + K+D + Sbjct: 310 ERIGMQRSWGAIGEADAVIFLHDLTRAGDPGYDAAERDIEQRLPAGVHVLDVHNKADAAA 369 Query: 334 TYTEEYDHL---ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL 390 +S+ TGEGL+ L ++ + + I + RHL L T +L Sbjct: 370 AGAAALAPQALRLSARTGEGLDTLRRRLLQLAGWQAGSEGVFI-ARTRHLQALQATAEHL 428 Query: 391 EMAS--LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A + D LD++AE LRLA +LG ITG ++LL IFS+FCIGK Sbjct: 429 VRARQLADRADAALDLLAEELRLAHDALGAITGRYTPDELLGDIFSRFCIGK 480 >gi|205422403|sp|A2SMI8|MNME_METPP RecName: Full=tRNA modification GTPase mnmE Length = 471 Score = 236 bits (601), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 151/472 (31%), Positives = 237/472 (50%), Gaps = 35/472 (7%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 + + I A++T A+ I+R+SG + E +C + PR A F G Sbjct: 3 LPRHHDPIVAIATAPGRGAVGIVRVSGRGLGALIEAVCGRALQ-PRHAHYGPFLDAQGEA 61 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGG-------------IAVVNGILEELAKMPNLRL 107 +D+GL + FP+P S+TGE+ E HGG A L ++ LR+ Sbjct: 62 IDQGLALHFPAPHSYTGEEVLELQAHGGPVLLQLLLARCLEAAAQPDARSGLPRLRGLRV 121 Query: 108 ANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTH 167 A PGEF+ RAF N K+DL +AE++ADLI + TE R + ++G S D+L Sbjct: 122 AEPGEFTERAFLNDKLDLAQAEAVADLIDASTEAAARSAGRALAGAFSQQVDTLRDRLIE 181 Query: 168 IRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227 +R +EA LDF EEE + + + + + + +++ K G ++R G ++V+ G Sbjct: 182 LRMLVEATLDFPEEE-IDFLEKADARGRLARIAEALDAVLARAKQGALLREGLRVVLAGQ 240 Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---V 284 N GKSSL NALA ++AIVT I GTTRD + + +EG + + DTAG+R DD V Sbjct: 241 PNVGKSSLLNALAGAELAIVTPIAGTTRDKVAETIQIEGVPLHVVDTAGLRAEDDARDEV 300 Query: 285 EKEGIKRTFLEVENADLILLLKEINSKKEISF-----------PKNIDFIFIGTKSDLYS 333 E+ G++R++ + AD ++ L ++ + + P + + + K+D + Sbjct: 301 ERIGMQRSWGAIGEADAVIFLHDLTRAGDPGYDAAERDIEQRLPAGVHVLDVHNKADAAA 360 Query: 334 TYTEEYDHL---ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL 390 +S+ TGEGL+ L ++ + + I + RHL L T +L Sbjct: 361 AGAAALAPQALRLSARTGEGLDTLRRRLLQLAGWQAGSEGVFI-ARTRHLQALQATAEHL 419 Query: 391 EMAS--LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A + D LD++AE LRLA +LG ITG ++LL IFS+FCIGK Sbjct: 420 VRARQLADRADAALDLLAEELRLAHDALGAITGRYTPDELLGDIFSRFCIGK 471 >gi|254251057|ref|ZP_04944375.1| hypothetical protein BDAG_00227 [Burkholderia dolosa AUO158] gi|124893666|gb|EAY67546.1| hypothetical protein BDAG_00227 [Burkholderia dolosa AUO158] Length = 495 Score = 235 bits (600), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 156/465 (33%), Positives = 248/465 (53%), Gaps = 33/465 (7%) Query: 4 EKETIFAVSTGALPSAISIIRLS-----GPSCFQVCEFICKKKKPFPRKASLRYFFGLDG 58 + + I A++T A I ++R+S + + + +C ++ PR AS F G Sbjct: 36 DSDPIVAIATAAGRGGIGVVRVSFGRGGEAAALPLIDALCGQRLA-PRHASYVPFLDAHG 94 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEFSR 115 LD+G+ + FP+P S+TGE E HGG V+ +L+ + + LRLA PGEF+R Sbjct: 95 APLDRGIALYFPAPHSYTGEHVLELQGHGGPIVMQLLLQRCLDAGRGFGLRLAEPGEFTR 154 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF N K+DL +AE++ADLI + TE R + + G S +D + ++R +EA Sbjct: 155 RAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRQIHALVDHVINLRMLVEAT 214 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 LDF EEE + + + + ++ ++ + + G ++R G +V+ G N GKSSL Sbjct: 215 LDFPEEE-IDFLEAADARGKLAKIREQLTHVLGDARQGALLREGLSVVLAGQPNVGKSSL 273 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 NALA ++AIVT I GTTRD + + +EG + I DTAG+RETDD VE+ GI RT+ E Sbjct: 274 LNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRETDDEVERIGIARTWSE 333 Query: 296 VENADLILLLKEINSKKEIS---------FPKNIDFIFIGTKSDLY---------STYTE 337 +E AD++L L ++S+ ++ FP + + + K+DL + + Sbjct: 334 IERADVVLHL--LDSRTGMTADDERIAARFPAGVPVVRVLNKTDLTGVPACVEHPAAEGD 391 Query: 338 EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--L 395 D +S+ G+G++ L ++ I + + + +RHL L +L A+ Sbjct: 392 LTDVHLSAKRGDGIDLLRAELLRIAGWQAGAEGVYL-ARERHLIALRAAQAHLAQAADHA 450 Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++ LD+ AE LRLA L ITG + LL +IFS+FCIGK Sbjct: 451 EQRAQSLDLFAEELRLAQEQLNSITGEFTSDDLLGVIFSRFCIGK 495 >gi|323336238|gb|EGA77509.1| Mss1p [Saccharomyces cerevisiae Vin13] Length = 526 Score = 235 bits (600), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 177/497 (35%), Positives = 262/497 (52%), Gaps = 65/497 (13%) Query: 4 EKETIFAVSTGA-LPSAISIIRLSGPSC-FQVCEFICKKKKPFPRKASLRYFFGLDGR-- 59 ++ TI+A+ST A SAI+IIR+SG + + P RKA LR + Sbjct: 35 QQPTIYALSTPANQTSAIAIIRISGTHAKYIYNRLVDSSTVPPIRKAILRNIYSPSSCSV 94 Query: 60 ----------ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKM------P 103 +LD LL+ F +P SFTGED E HVHGG AVVN IL+ + + Sbjct: 95 KPHDQKESKILLDTSLLLYFQAPYSFTGEDVLELHVHGGKAVVNSILKAIGSLHDRSSGK 154 Query: 104 NLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWID 163 ++R A PG+FSRRAF+NGK DL + E + DLI SETE QRR ++ +G+ L+ W + Sbjct: 155 DIRFALPGDFSRRAFQNGKFDLTQLEGIKDLIDSETESQRRSALSSFNGDNKILFENWRE 214 Query: 164 KLTHIRSFIEADLDFSEEEDVQNFSSKEVLND----ILFLKNDISSHISQGKLGEIIRNG 219 + + + A +DF+++ + ++ E+ +B I+ L++ I + + + + I++NG Sbjct: 215 TIIENMAQLTAIIDFADDNSQEIQNTDEIFHBVEKNIICLRDQIVTFMQKVEKSTILQNG 274 Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 K+V+LG N GKSSL N+L D++IV+DIPGTTRD + +++ GY V I DTAGIRE Sbjct: 275 IKLVLLGAPNVGKSSLVNSLTNDDISIVSDIPGTTRDSIDAMINVNGYKVIICDTAGIRE 334 Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNI------------DFIFIG 326 + D +E GI R + +DL L + + ++ P++I I + Sbjct: 335 KSSDKIEMLGIXRAKKKSVQSDLCLFIVDPTDLSKL-LPEDILAHLSSKTFGNKRIIIVV 393 Query: 327 TKSDLYST--YTEEYDHL------------ISSFTGEGLEELINKIKSILSNKFKKLPFS 372 KSDL S T+ + L +S T EG+E LI S L++ F+ L S Sbjct: 394 NKSDLVSDDEMTKVLNKLQTRLGSKYPILSVSCKTKEGIESLI----STLTSNFESLSQS 449 Query: 373 ------IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDII--AENLRLASVSLGKITG-CV 423 + KR L V Y KD DI+ ENLR AS + KITG + Sbjct: 450 SADASPVIVSKRVSEILKNDVLYGLEEFFKSKDFHNDIVLATENLRYASDGIAKITGQAI 509 Query: 424 DVEQLLDIIFSKFCIGK 440 +E++LD +FSKFCIGK Sbjct: 510 GIEEILDSVFSKFCIGK 526 >gi|256841233|ref|ZP_05546740.1| tRNA modification GTPase TrmE [Parabacteroides sp. D13] gi|256737076|gb|EEU50403.1| tRNA modification GTPase TrmE [Parabacteroides sp. D13] Length = 461 Score = 235 bits (600), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 158/464 (34%), Positives = 252/464 (54%), Gaps = 35/464 (7%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP-----FPRKASLRY--FFGLDGR 59 TI A+ST I++IR+SGP F++C+ I + KK + +L Y G + Sbjct: 3 TICAISTAPGVGGIAVIRVSGPDTFKICDRIFRPKKAGKSLSTQKAYTLTYGSIVGNNDE 62 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 +D+ + VF +P SFTGED+ E HG + IL+ L R+A PGE+++RAF Sbjct: 63 TIDEVIAAVFCAPHSFTGEDTVEITCHGSTYIQQQILQSLIS-SGCRIAQPGEYTQRAFM 121 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NGK+DL +AE++ADLI+S + Q RL++ M G S + ++L H S +E +LDFS Sbjct: 122 NGKMDLSQAEAVADLIASTSAGQHRLALSQMRGGFSRELAELRNQLLHFTSLMELELDFS 181 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQG-KLGEIIRNGYKIVILGHSNAGKSSLFNA 238 + E+++ F+ + L + + S ++Q +G I+NG + I+G +NAGKS+L NA Sbjct: 182 DHEELE-FADRSELRTLADHIEQVISKLAQSFSVGNAIKNGIPVAIIGETNAGKSTLLNA 240 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L +D AIV+DI GTTRDV+ +++ G L + DTAGIRET D +E GI+R+F ++ Sbjct: 241 LLNEDKAIVSDIHGTTRDVIEDTININGQLFRFIDTAGIRETSDTIEALGIERSFKALDQ 300 Query: 299 ADLILLLKEINSK--------KEISFPK--NIDFIFIGTKSDL--------YSTYTEEYD 340 A +++L+ ++ +EI+ P+ N I K D+ +S TE + Sbjct: 301 AQIVILMYDLTRDLKDFEAFYQEIA-PRLTNKSVILAMNKCDVLPASSLPTFSFPTEGWH 359 Query: 341 HLISSFTGE----GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396 + S G+ L++L+ ++ SI + + + H L H + + ++ LN Sbjct: 360 QIAISAKGKLHIAELQQLLTEVSSIPTLHQSDIIVTNARHFEALTHALEAIHRVQ-EGLN 418 Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G D I+++LR L I G V +Q+L IF FCIGK Sbjct: 419 SSLSG-DFISQDLRECIFHLSDIVGEVTTDQVLGNIFQHFCIGK 461 >gi|256273535|gb|EEU08469.1| Mss1p [Saccharomyces cerevisiae JAY291] Length = 526 Score = 235 bits (600), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 179/500 (35%), Positives = 263/500 (52%), Gaps = 65/500 (13%) Query: 1 MNHEKETIFAVSTGA-LPSAISIIRLSGPSC-FQVCEFICKKKKPFPRKASLRYFFGLDG 58 + ++ TI+A+ST A SAI+IIR+SG + + P RKA LR + Sbjct: 32 LTFQQPTIYALSTPANQTSAIAIIRISGTHAKYIYNRLVDSSTVPPIRKAILRNIYSPSS 91 Query: 59 R------------ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKM---- 102 +LD LL+ F +P SFTGED E HVHGG AVVN IL+ + + Sbjct: 92 CSVKPHDQKESKILLDTSLLLYFQAPYSFTGEDVLELHVHGGKAVVNSILKAIGSLHDRS 151 Query: 103 --PNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQ 160 ++R A PG+FSRRAF+NGK DL + E + DLI SETE QRR ++ +G+ L+ Sbjct: 152 SGKDIRFALPGDFSRRAFQNGKFDLTQLEGIKDLIDSETESQRRSALSSFNGDNKILFEN 211 Query: 161 WIDKLTHIRSFIEADLDFSEE--EDVQNFSS--KEVLNDILFLKNDISSHISQGKLGEII 216 W + + + + A +DF+++ +++QN V +I+ L++ I + + + + I+ Sbjct: 212 WRETIIENMAQLTAIIDFADDNSQEIQNTDEIFHNVEKNIICLRDQIVTFMQKVEKSTIL 271 Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 +NG K+V+LG N GKSSL N+L D++IV+DIPGTTRD + +++ GY V I DTAG Sbjct: 272 QNGIKLVLLGAPNVGKSSLVNSLTNDDISIVSDIPGTTRDSIDAMINVNGYKVIICDTAG 331 Query: 277 IRE-TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNI------------DFI 323 IRE + D +E GI R + +DL L + + ++ P++I I Sbjct: 332 IREKSSDKIEMLGIDRAKKKSVQSDLCLFIVDPTDLSKL-LPEDILAHLSSKTFGNKRII 390 Query: 324 FIGTKSDLYST--YTEEYDHL------------ISSFTGEGLEELINKIKSILSNKFKKL 369 + KSDL S T+ + L +S T EG+E LI S L++ F+ L Sbjct: 391 IVVNKSDLVSDDEMTKVLNKLQTRLGSKYPILSVSCKTKEGIESLI----STLTSNFESL 446 Query: 370 PFS------IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDII--AENLRLASVSLGKITG 421 S + KR L V Y KD DI+ ENLR AS + KITG Sbjct: 447 SQSSADASPVIVSKRVSEILKNDVLYGLEEFFKSKDFHNDIVLATENLRYASDGIAKITG 506 Query: 422 -CVDVEQLLDIIFSKFCIGK 440 + +E++LD +FSKFCIGK Sbjct: 507 QAIGIEEILDSVFSKFCIGK 526 >gi|134297397|ref|YP_001121132.1| tRNA modification GTPase TrmE [Burkholderia vietnamiensis G4] gi|205829126|sp|A4JJ44|MNME_BURVG RecName: Full=tRNA modification GTPase mnmE gi|134140554|gb|ABO56297.1| tRNA modification GTPase trmE [Burkholderia vietnamiensis G4] Length = 464 Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 155/467 (33%), Positives = 244/467 (52%), Gaps = 37/467 (7%) Query: 4 EKETIFAVSTGALPSAISIIRLS----GPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR 59 + + I A++T A I ++R+S G + Q ++ PR AS F G Sbjct: 5 DSDPIVAIATAAGRGGIGVVRVSFGRGGEAAAQALSDALCGQRLAPRHASYVPFVDAHGA 64 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEFSRR 116 LD+G+ + FP+P S+TGE E HGG V+ +L+ + + LRLA PGEF+RR Sbjct: 65 PLDRGIALYFPAPHSYTGEHVLELQGHGGPIVMQLLLQRCLDAGRGFGLRLAEPGEFTRR 124 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF N K+DL +AE++ADLI + TE R + + S ++ + +R +EA L Sbjct: 125 AFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDSAFSRQIHALVEDVITLRMLVEATL 184 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 DF EEE + + + + ++ ++ + + G ++R G +V+ G N GKSSL Sbjct: 185 DFPEEE-IDFLEAADARGKLAKIREQLAHVLGDARQGALLREGLSVVLAGQPNVGKSSLL 243 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 NALA ++AIVT I GTTRD + + +EG + I DTAG+RET+D VE+ GI RT+ E+ Sbjct: 244 NALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRETEDEVERIGIARTWSEI 303 Query: 297 ENADLILLLKEINSKKEIS---------FPKNIDFIFIGTKSDLYST------------Y 335 E AD++L L ++S+ ++ FP + + + K+DL Sbjct: 304 ERADVVLHL--LDSRTGMTPEDETIAARFPDGVPVVRVLNKTDLTGVPACVEHPAAAGDL 361 Query: 336 TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS- 394 TE + +S+ G+G++ L ++ I + + + +RHL L +L A+ Sbjct: 362 TEVH---LSAKRGDGIDMLRAELLRIAGWQAGAEGVYL-ARERHLIALRAAQEHLAQAAD 417 Query: 395 -LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++ LD+ AE LRLA L ITG + LL +IFS+FCIGK Sbjct: 418 HAEQRAQSLDLFAEELRLAQEQLNAITGEFTSDDLLGVIFSRFCIGK 464 >gi|300705596|ref|YP_003747199.1| GTPase [Ralstonia solanacearum CFBP2957] gi|299073260|emb|CBJ44619.1| GTPase involved in tRNA modification and in thiophene and furan oxidation [Ralstonia solanacearum CFBP2957] Length = 434 Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 145/434 (33%), Positives = 232/434 (53%), Gaps = 29/434 (6%) Query: 33 VCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVV 92 V + +C + PR+A+ F DG +D+G+ + FP+P S+TGED E HGG V+ Sbjct: 4 VMQAVCGRLLQ-PRQATYLPFLDADGHAIDRGIALWFPAPHSYTGEDVLELQGHGGPVVM 62 Query: 93 NGILE---ELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEG 149 +L + + +R+A PGEF+RRAF N K+DL +AE++ADLI + TE R + Sbjct: 63 QLLLSRCLQTGREIGVRVAEPGEFTRRAFLNDKMDLAQAEAVADLIEASTEAAARSAARS 122 Query: 150 MSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQ 209 + G S ++++ H+R +EA LDF EEE + + + + ++ + ++Q Sbjct: 123 LDGAFSQAVHALVERVIHLRMLVEATLDFPEEE-IDFLEAADARGQLADIRARLDGVLAQ 181 Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269 + G ++R G +V+ G N GKSSL NALA ++AIVT I GTTRD + + +EG + Sbjct: 182 ARQGALLREGLHVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVQQTIQIEGIPL 241 Query: 270 KISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL---------------KEINSKKEI 314 I DTAG+R+T+D VE+ GI+RT+ + AD++L L I+++ Sbjct: 242 NIVDTAGLRDTEDEVERIGIERTWAAIARADVVLHLLDAADYRALGLSAEDAAIDARIAG 301 Query: 315 SFPKNIDFIFIGTKSDLYSTYT------EEYDHLISSFTGEGLEELINKIKSILSNKFKK 368 P + + + K DL T + + +S+ G G+E L + I + Sbjct: 302 HVPAGVPTLRVINKIDLSGAATPVRVDAQPPEVWLSARDGSGIELLRAALLEIAGWQGGG 361 Query: 369 LPFSIPSHKRHLYHLSQTVRYLEMAS--LNEKDCGLDIIAENLRLASVSLGKITGCVDVE 426 + + +RHL L +L +A+ +++ LD+ AE LRLA +L ITG + Sbjct: 362 EGLYL-ARERHLSALRAAKDHLAIAADHADQRAQSLDLFAEELRLAQEALNSITGAFSSD 420 Query: 427 QLLDIIFSKFCIGK 440 LL +IFS+FCIGK Sbjct: 421 DLLGVIFSRFCIGK 434 >gi|325095034|gb|EGC48344.1| tRNA modification GTPase GTPBP3 [Ajellomyces capsulatus H88] Length = 615 Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 173/545 (31%), Positives = 270/545 (49%), Gaps = 114/545 (20%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLD-----GRI 60 TI+A+ST +AI+I+R+SGP+C Q+ + +C K+ P PR A+LR + I Sbjct: 63 TIYALSTAPGRAAIAIVRVSGPACVQIYDALCPKRPLPNPRVAALRTLYDPSVPPSVNTI 122 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAK-----------MPNLRLAN 109 LD+ +++ FP+P + TGED E H+HGG AVV +L + + MP++R A Sbjct: 123 LDRAVVLHFPAPNTVTGEDVLELHIHGGPAVVKAVLNAIPRCAGAFSNEKIAMPSVRYAE 182 Query: 110 PGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR 169 PGEF+RRAF N ++ L + E+L + +S+ETE QRRL++ G SG L+ Y +W +L + R Sbjct: 183 PGEFTRRAFLNDRLSLPQIEALGNTLSAETEHQRRLAVRGTSGSLAFRYERWRQQLLYAR 242 Query: 170 SFIEADLDFSE----EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVIL 225 +EA +DFSE +E ++ F S + ++ L I+ HI GE++R+G ++ +L Sbjct: 243 GEMEALIDFSEDQHFDESIEEFVSS-ITGEVRNLVRQINLHIENASKGELLRSGIRVALL 301 Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD---- 281 G NAGKSSL N + ++ AIV+ GTTRD++ + +D+ GY K D AG+R Sbjct: 302 GAPNAGKSSLLNRIVGREAAIVSSEEGTTRDIVDVGVDIGGYFCKFGDMAGLRSGHIARS 361 Query: 282 -----DIVEKEGIKRTFLEVENADLILL---LKEINSKKEISF---PKNID--------- 321 VE+EGI+R +D++++ L+E ++ + P+ +D Sbjct: 362 GSMPIGAVEQEGIRRAKARALESDVVIVVLSLEESDNGTGVKLVLEPEVVDAVRSCIALE 421 Query: 322 --FIFIGTKSDLYS--TYTEEYDH-LISSFTGE--------------------------- 349 I K D YS TYT L+ S T E Sbjct: 422 KHMIVAVNKFDKYSPTTYTARTQQKLVDSLTEEISSVEPRLTQDQIFLISCREVENEVSQ 481 Query: 350 ---------GLEELINKIKSI-----LSN---KFKKLPF--SIPSHKRHLYHLSQTVRYL 390 L ELI K + L N +F KL + S+ R +L + V++L Sbjct: 482 EAEPGNIQKFLGELIRTFKRMSTPSELDNGNEQFDKLYWEDSLGVTHRQRSNLQKCVQHL 541 Query: 391 ------------EMASLNEKDCGLDII--AENLRLASVSLGKITG---CVDVEQLLDIIF 433 A+ + + DI+ AE+LR A+ L KITG DVE +L ++F Sbjct: 542 NDFLSQTCQTPDNAANAEQIEVNFDIVTAAEHLRFAADCLAKITGRGESGDVEDVLGVVF 601 Query: 434 SKFCI 438 K+ + Sbjct: 602 EKYSL 606 >gi|240277090|gb|EER40600.1| tRNA modification GTPase GTPBP3 [Ajellomyces capsulatus H143] Length = 615 Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 173/545 (31%), Positives = 270/545 (49%), Gaps = 114/545 (20%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLD-----GRI 60 TI+A+ST +AI+I+R+SGP+C Q+ + +C K+ P PR A+LR + I Sbjct: 63 TIYALSTAPGRAAIAIVRVSGPACVQIYDALCPKRPLPNPRVAALRTLYDPSVPPSVNTI 122 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAK-----------MPNLRLAN 109 LD+ +++ FP+P + TGED E H+HGG AVV +L + + MP++R A Sbjct: 123 LDRAVVLHFPAPNTVTGEDVLELHIHGGPAVVKAVLNAIPRCAGAFSNEKIAMPSVRYAE 182 Query: 110 PGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR 169 PGEF+RRAF N ++ L + E+L + +S+ETE QRRL++ G SG L+ Y +W +L + R Sbjct: 183 PGEFTRRAFLNDRLSLPQIEALGNTLSAETEHQRRLAVRGTSGSLAFRYERWRQQLLYAR 242 Query: 170 SFIEADLDFSE----EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVIL 225 +EA +DFSE +E ++ F S + ++ L I+ HI GE++R+G ++ +L Sbjct: 243 GEMEALIDFSEDQHFDESIEEFVSS-ITGEVRNLVRQINLHIENASKGELLRSGIRVALL 301 Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD---- 281 G NAGKSSL N + ++ AIV+ GTTRD++ + +D+ GY K D AG+R Sbjct: 302 GAPNAGKSSLLNRIVGREAAIVSSEEGTTRDIVDVGVDIGGYFCKFGDMAGLRSGHIARS 361 Query: 282 -----DIVEKEGIKRTFLEVENADLILL---LKEINSKKEISF---PKNID--------- 321 VE+EGI+R +D++++ L+E ++ + P+ +D Sbjct: 362 GSMPIGAVEQEGIRRAKARALESDVVIVVLSLEESDNGTGVKLVLEPEVVDAVRSCIALE 421 Query: 322 --FIFIGTKSDLYS--TYTEEYDH-LISSFTGE--------------------------- 349 I K D YS TYT L+ S T E Sbjct: 422 KHMIVAVNKFDKYSPTTYTARTQQKLVDSLTEEISSVEPRLTQDQIFLISCREVENEVSQ 481 Query: 350 ---------GLEELINKIKSI-----LSN---KFKKLPF--SIPSHKRHLYHLSQTVRYL 390 L ELI K + L N +F KL + S+ R +L + V++L Sbjct: 482 EADPGNIQKFLGELIRTFKRMSTPSELDNGNEQFDKLYWEDSLGVTHRQRSNLQKCVQHL 541 Query: 391 ------------EMASLNEKDCGLDII--AENLRLASVSLGKITG---CVDVEQLLDIIF 433 A+ + + DI+ AE+LR A+ L KITG DVE +L ++F Sbjct: 542 NDFLSQTCQTPDNAANAEQIEVNFDIVTAAEHLRFAADCLAKITGRGESGDVEDVLGVVF 601 Query: 434 SKFCI 438 K+ + Sbjct: 602 EKYSL 606 >gi|6323665|ref|NP_013736.1| Mss1p [Saccharomyces cerevisiae S288c] gi|1709142|sp|P32559|MSS1_YEAST RecName: Full=tRNA modification GTPase MSS1, mitochondrial; Flags: Precursor gi|798934|emb|CAA89126.1| Mss1p [Saccharomyces cerevisiae] gi|110610140|gb|ABG77646.1| mitochondrial GTP-binding protein [Saccharomyces cerevisiae] gi|190408262|gb|EDV11527.1| GTPase MSS1, mitochondrial precursor [Saccharomyces cerevisiae RM11-1a] gi|285814026|tpg|DAA09921.1| TPA: Mss1p [Saccharomyces cerevisiae S288c] gi|323332012|gb|EGA73423.1| Mss1p [Saccharomyces cerevisiae AWRI796] Length = 526 Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 179/497 (36%), Positives = 262/497 (52%), Gaps = 65/497 (13%) Query: 4 EKETIFAVSTGA-LPSAISIIRLSGPSC-FQVCEFICKKKKPFPRKASLRYFFGLDGR-- 59 ++ TI+A+ST A SAI+IIR+SG + + P RKA LR + Sbjct: 35 QQPTIYALSTPANQTSAIAIIRISGTHAKYIYNRLVDSSTVPPIRKAILRNIYSPSSCSV 94 Query: 60 ----------ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKM------P 103 +LD LL+ F +P SFTGED E HVHGG AVVN IL+ + + Sbjct: 95 KPHDQKESKILLDTSLLLYFQAPYSFTGEDVLELHVHGGKAVVNSILKAIGSLHDRSSGK 154 Query: 104 NLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWID 163 ++R A PG+FSRRAF+NGK DL + E + DLI SETE QRR ++ +G+ L+ W + Sbjct: 155 DIRFALPGDFSRRAFQNGKFDLTQLEGIKDLIDSETESQRRSALSSFNGDNKILFENWRE 214 Query: 164 KLTHIRSFIEADLDFSEE--EDVQNFSS--KEVLNDILFLKNDISSHISQGKLGEIIRNG 219 + + + A +DF+++ +++QN V +I+ L++ I + + + + I++NG Sbjct: 215 TIIENMAQLTAIIDFADDNSQEIQNTDEIFHNVEKNIICLRDQIVTFMQKVEKSTILQNG 274 Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 K+V+LG N GKSSL N+L D++IV+DIPGTTRD + +++ GY V I DTAGIRE Sbjct: 275 IKLVLLGAPNVGKSSLVNSLTNDDISIVSDIPGTTRDSIDAMINVNGYKVIICDTAGIRE 334 Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNI------------DFIFIG 326 + D +E GI R + +DL L + + ++ P++I I + Sbjct: 335 KSSDKIEMLGIDRAKKKSVQSDLCLFIVDPTDLSKL-LPEDILAHLSSKTFGNKRIIIVV 393 Query: 327 TKSDLYST--YTEEYDHL------------ISSFTGEGLEELINKIKSILSNKFKKLPFS 372 KSDL S T+ + L +S T EG+E LI S L++ F+ L S Sbjct: 394 NKSDLVSDDEMTKVLNKLQTRLGSKYPILSVSCKTKEGIESLI----STLTSNFESLSQS 449 Query: 373 ------IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDII--AENLRLASVSLGKITG-CV 423 + KR L V Y KD DI+ ENLR AS + KITG + Sbjct: 450 SADASPVIVSKRVSEILKNDVLYGLEEFFKSKDFHNDIVLATENLRYASDGIAKITGQAI 509 Query: 424 DVEQLLDIIFSKFCIGK 440 +E++LD +FSKFCIGK Sbjct: 510 GIEEILDSVFSKFCIGK 526 >gi|89100947|ref|ZP_01173794.1| tRNA modification GTPase [Bacillus sp. NRRL B-14911] gi|89084356|gb|EAR63510.1| tRNA modification GTPase [Bacillus sp. NRRL B-14911] Length = 461 Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 161/462 (34%), Positives = 262/462 (56%), Gaps = 27/462 (5%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK----KKKPFPRKASLRYFFGLD-- 57 E +TI A+ST AI+I+RLSG F + + + + K+ ++ Y +D Sbjct: 2 ELDTIAAISTPMGEGAIAIVRLSGDEAFSIADKLYRGVGGKRISDAASHTIHYGHIIDPK 61 Query: 58 -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 G++ ++ ++ V P++FT ED E + HGGI VN +L+ L RLA PGEF++R Sbjct: 62 TGQVAEEVMVSVMKGPKTFTKEDVVEINCHGGIVSVNRVLQ-LVLNHGARLAEPGEFTKR 120 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NG+IDL +AE++ DLI ++T+ +++ M G LS L + ++ + IE ++ Sbjct: 121 AFLNGRIDLSQAEAVMDLIRAKTDRAMNVALGQMEGRLSKLVKRLRQEILETLAHIEVNI 180 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D+ E +DV+ + + +L F+K +I + + G+I+R G VI+G N GKSSL Sbjct: 181 DYPEYDDVEEMTHQLLLEKAGFVKGEIEKLLKTSEQGKILREGLSTVIVGRPNVGKSSLL 240 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N+L ++ AIVTDIPGTTRDV+ +++ G +++ DTAGIRET+DIVE+ G++R+ + Sbjct: 241 NSLVHENKAIVTDIPGTTRDVIEEYVNVRGVPLRLLDTAGIRETEDIVERIGVERSRQVL 300 Query: 297 ENADLILLL----KEINSKKEISFP--KNIDFIFIGTKSDLYSTYTEEY-------DHLI 343 + ADLILL+ E+ + E F +++D I I K+DL E L+ Sbjct: 301 KEADLILLVVNYSDELTQEDENLFKVVEDMDVIVIVNKTDLPQQIDMERVRELAAGHRLV 360 Query: 344 SS--FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC 400 ++ +G++EL I S+ + + + S+ RH+ L+Q + +E A LN D Sbjct: 361 TTSLLEDQGVDELEESISSLFFAGSIEAGDMTYVSNTRHIALLNQALNSIEEA-LNGVDF 419 Query: 401 G--LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G +DII +L LG+I G + L+D +FS+FC+GK Sbjct: 420 GTPIDIIQIDLTRTWELLGEIIGESVHDSLIDQLFSQFCLGK 461 >gi|115629139|ref|XP_781610.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] gi|115969591|ref|XP_001188085.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] Length = 546 Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 132/338 (39%), Positives = 197/338 (58%), Gaps = 8/338 (2%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCE-FICKKKKPFPRKASLRYFFG-LDGRILD 62 + TIFA+++G ++++R+SGP V + I K+ R+A L + ++D Sbjct: 38 QRTIFALASGHGKCGVAVVRVSGPRANVVFDKMILSKRAIETRQAVLSPIYDPTTNELID 97 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 GL++ F P+SFTGED E VHGG AV+ + L K+ LA PGEFS+RAF NGK Sbjct: 98 HGLILWFTGPKSFTGEDVCELQVHGGPAVIAALYGALGKLDGFHLAEPGEFSKRAFYNGK 157 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 +DL E E L DLI +ETE QR+ ++ MSG LS LY W +L + +EA +DFSE+E Sbjct: 158 LDLTEVEGLGDLIQAETEAQRQQAVRQMSGVLSKLYEGWRGRLIRTVAHVEAFIDFSEDE 217 Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 +++ +E ++ L ++ H+ + GE +R+G + I G N GKS+L NAL ++ Sbjct: 218 NIEEGVLEEARQEVEQLLTEVRRHLQDSRKGERLRSGVHVTIAGQPNVGKSTLLNALCQR 277 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 AIV+ I GTTRDV+ L++ GY V +SDTAGIRE+ D +E+EG++R ADL+ Sbjct: 278 PAAIVSPIAGTTRDVVESSLNIGGYPVILSDTAGIRESLDEIEREGVRRARERTNLADLV 337 Query: 303 LLLKEINSKKEISFPK----NIDFIFIGTKSDLYSTYT 336 + + + + PK ID T+S L+ T Sbjct: 338 IYMLDATTLDPQPSPKAFLEQIDSYV--TQSKLWENRT 373 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 39/102 (38%), Positives = 58/102 (56%), Gaps = 9/102 (8%) Query: 343 ISSFTGEGLEELIN----KIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398 +S T EG++ ++ K+K + SN P+ + +RH HL++ L + S + Sbjct: 450 VSCKTEEGMDGFLDLLQEKLKKMCSNPTSSDPYL--TQERHRNHLTECA--LSLQSFESR 505 Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D L + AE LR+A LGKITG V E++LD+IF FCIGK Sbjct: 506 D-DLVMAAEELRIALRQLGKITGHVTTEEVLDVIFKDFCIGK 546 >gi|90194124|gb|ABD92623.1| ThdF [Actinobacillus porcinus] Length = 436 Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 154/437 (35%), Positives = 245/437 (56%), Gaps = 29/437 (6%) Query: 19 AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGE 78 + I+R+SGP V + + K PR A+ F +DG LD+G+ + F +P SFTGE Sbjct: 7 GVGILRVSGPLAEDVAKAVVGKTLK-PRLANYLPFKDIDGTTLDQGIALFFKAPNSFTGE 65 Query: 79 DSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSE 138 D E HGG V++ +L+ + ++ +RLA PGEFS +AF N K+DL +AE++ADLI + Sbjct: 66 DVLELQGHGGQIVLDLLLKRILQVKGVRLAKPGEFSEQAFLNDKLDLAQAEAIADLIDAS 125 Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LND 195 +E R +++ + GE S+ Q ++++ ++R+++EA +DF +EE + + ++ LN+ Sbjct: 126 SEQAARSALKSLQGEFSNKVNQLVEQVIYLRTYVEAAIDFPDEE-IDFLADGKIEGHLNE 184 Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255 I+ +++ QG I+R G K+VI G NAGKSSL NALA ++ AIVTDI GTTR Sbjct: 185 IIAQLDNVRREARQGS---ILREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTR 241 Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL----------- 304 DVL + ++G + I DTAG+R+ D VE+ GI R + E+E AD +LL Sbjct: 242 DVLREHIHIDGMPLHIIDTAGLRDATDEVERIGITRAWNEIEQADRVLLMLDSSDPASND 301 Query: 305 LKEINSKKEISFPKNIDFIFIGTKSDLYS---TYTEEYDHLI---SSFTGEGLEELINKI 358 L+++ S+ P N+ I K+DL + EE + I S+ T +G++ L + Sbjct: 302 LEKVRSEFLAKLPANLPVTIIRNKTDLSGEGESIQEENGYTIIRLSAQTQQGVDFLREHL 361 Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLASVSL 416 K + + + +RHL L + +L+ L + G +++AE LRL L Sbjct: 362 KQSMGYQ-TGTEGGFLARRRHLEALEKAAEHLQAGHIQLTQFYAG-ELLAEELRLVQNCL 419 Query: 417 GKITGCVDVEQLLDIIF 433 +ITG + LL IF Sbjct: 420 SEITGQFTSDDLLGNIF 436 >gi|255014529|ref|ZP_05286655.1| tRNA modification GTPase TrmE [Bacteroides sp. 2_1_7] Length = 461 Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 157/464 (33%), Positives = 252/464 (54%), Gaps = 35/464 (7%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP-----FPRKASLRY--FFGLDGR 59 TI A+ST I+++R+SGP F++C+ I + KK + +L Y G + Sbjct: 3 TICAISTAPGVGGIAVVRVSGPDAFKICDRIFRPKKAGKSLSTQKAYTLTYGSIVGNNDE 62 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 +D+ + VF +P SFTGED+ E HG + IL+ L R+A PGE+++RAF Sbjct: 63 TIDEVIAAVFRAPHSFTGEDTVEITCHGSTYIQQQILQSLIS-SGCRIAQPGEYTQRAFM 121 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NGK+DL +AE++ADLI+S + Q RL++ M G S + ++L H S +E +LDFS Sbjct: 122 NGKMDLSQAEAVADLIASTSTGQHRLALSQMRGGFSRELAELRNQLLHFTSLMELELDFS 181 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQG-KLGEIIRNGYKIVILGHSNAGKSSLFNA 238 + E+++ F+ + L + + S ++Q +G I+NG + I+G +NAGKS+L NA Sbjct: 182 DHEELE-FADRSELRTLADHIEQVISKLAQSFSVGNAIKNGIPVAIIGETNAGKSTLLNA 240 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L +D AIV+DI GTTRDV+ +++ G L + DTAGIRET D +E GI+R+F ++ Sbjct: 241 LLNEDKAIVSDIHGTTRDVIEDTININGQLFRFIDTAGIRETSDAIEALGIERSFKALDQ 300 Query: 299 ADLILLLKEINSK--------KEISFPK--NIDFIFIGTKSDL--------YSTYTEEYD 340 A +++L+ ++ +EI+ P+ N I K D+ +S TE + Sbjct: 301 AQIVILMYDLTRDLKDFEAFYQEIA-PRLTNKSVILAMNKCDVLPTSSLPTFSFPTEGWH 359 Query: 341 HLISSFTGE----GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396 + S G+ L++L+ ++ SI + + + H L H + + ++ LN Sbjct: 360 QIAISAKGKLHIAELQQLLTEVSSIPTLHQSDIIVTNARHFEALTHALEAIHRVQ-EGLN 418 Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G D I+++LR L I G V +Q+L IF FCIGK Sbjct: 419 SSLSG-DFISQDLRECIFHLSDIVGEVTTDQVLQNIFRYFCIGK 461 >gi|262383614|ref|ZP_06076750.1| tRNA modification GTPase TrmE [Bacteroides sp. 2_1_33B] gi|262294512|gb|EEY82444.1| tRNA modification GTPase TrmE [Bacteroides sp. 2_1_33B] Length = 461 Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 157/464 (33%), Positives = 252/464 (54%), Gaps = 35/464 (7%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP-----FPRKASLRY--FFGLDGR 59 TI A+ST I+++R+SGP F++C+ I + KK + +L Y G + Sbjct: 3 TICAISTAPGVGGIAVVRVSGPDAFKICDRIFRPKKAGKSLSTQKAYTLTYGSIVGNNDE 62 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 +D+ + VF +P SFTGED+ E HG + IL+ L R+A PGE+++RAF Sbjct: 63 TIDEVIAAVFRAPHSFTGEDTVEITCHGSTYIQQQILQSLIS-SGCRIAQPGEYTQRAFM 121 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NGK+DL +AE++ADLI+S + Q RL++ M G S + ++L H S +E +LDFS Sbjct: 122 NGKMDLSQAEAVADLIASTSAGQHRLALSQMRGGFSRELAELRNQLLHFTSLMELELDFS 181 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQG-KLGEIIRNGYKIVILGHSNAGKSSLFNA 238 + E+++ F+ + L + + S ++Q +G I+NG + I+G +NAGKS+L NA Sbjct: 182 DHEELE-FADRSELRTLADHIEQVISKLAQSFSVGNAIKNGIPVAIIGETNAGKSTLLNA 240 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L +D AIV+DI GTTRDV+ +++ G L + DTAGIRET D +E GI+R+F ++ Sbjct: 241 LLNEDKAIVSDIHGTTRDVIEDTININGQLFRFIDTAGIRETSDTIEALGIERSFKALDQ 300 Query: 299 ADLILLLKEINSK--------KEISFPK--NIDFIFIGTKSDL--------YSTYTEEYD 340 A +++L+ ++ +EI+ P+ N I K D+ +S TE + Sbjct: 301 AQIVILMYDLTRDLKDFEAFYQEIA-PRLTNKSVILAMNKCDVLPASSLPTFSFPTEGWH 359 Query: 341 HLISSFTGE----GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396 + S G+ L++L+ ++ SI + + + H L H + + ++ LN Sbjct: 360 QIAISAKGKLHIAELQQLLTEVSSIPTLHQSDIIVTNARHFEALTHALEAIHRVQ-EGLN 418 Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G D I+++LR L I G V +Q+L IF FCIGK Sbjct: 419 SSLSG-DFISQDLRECIFHLSDIVGEVTTDQVLGNIFRHFCIGK 461 >gi|255723826|ref|XP_002546842.1| hypothetical protein CTRG_01147 [Candida tropicalis MYA-3404] gi|240134733|gb|EER34287.1| hypothetical protein CTRG_01147 [Candida tropicalis MYA-3404] Length = 488 Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 161/485 (33%), Positives = 260/485 (53%), Gaps = 52/485 (10%) Query: 2 NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-RKASLRYFFGLDG-- 58 N K TIFA+ST SAI+++R+SGP + + + P R AS+R + Sbjct: 10 NTLKPTIFALSTKLGKSAIAVVRISGPQAKYIYNKLTRTTTPPKNRIASVRKLLSTETDK 69 Query: 59 -RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKM--PN----LRLANPG 111 ILD+ L + P P+++TGED E H+HGGIA++ ++ + + P+ +R A+ G Sbjct: 70 PSILDEALTLYLPGPKTYTGEDLLELHLHGGIAIIKAVMNSIKTLHAPDQGIIIRQADRG 129 Query: 112 EFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSF 171 EFSR+AF NG++DL E E + ++I+SETE QR ++ SG+ ++ QW + + Sbjct: 130 EFSRQAFVNGRLDLTELEGINEMINSETEQQRLANLSSSSGKTRLVFKQWRQDILEEIAN 189 Query: 172 IEADLDFSEEEDVQNFSS--KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSN 229 + +DF E+ D+ + V+ +I L+ I ++ + + EI+ NG K+ +LG N Sbjct: 190 LTTIIDFGEDHDLDETETLINNVIVNIKKLEEQIRKYLKKVRSSEILLNGIKLTLLGPPN 249 Query: 230 AGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--ETDDIVEKE 287 AGKSS+ N L KD AIV++I GTTRD L I ++ G+ V I DTAGIR E DI+E+E Sbjct: 250 AGKSSILNTLVNKDAAIVSEIAGTTRDALDIPCEIGGFKVVIGDTAGIRMLEKADIIERE 309 Query: 288 GIKRTFLEVENADLILLLKEINSKKEIS---------FPKNIDFIFIGTKSDLY----ST 334 GIKR ADLI+++ + + + + + + + K DLY + Sbjct: 310 GIKRAIERSYLADLIIVVLDPTTTENTDELKDHLANLMKEKKNILIVLNKQDLYPDSVND 369 Query: 335 YTEEYD----------HLISSFTGEGLEELINKIKSILSNKFKKL-------PFSIPSHK 377 E+Y ++S +G+G++EL + +L NKFK L P + S Sbjct: 370 MIEQYSVSLNVPKDLFQVVSCSSGQGMDEL----QELLVNKFKSLAETDESDPVLVSSRI 425 Query: 378 RHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASV-SLGKITG-CVDVEQLLDIIFSK 435 + + + E ++D ++A + SV +GKITG +D++++LD++FS Sbjct: 426 QDILENDILYGFNEFYKWAKQDDV--VVATDCLTQSVDGIGKITGEYIDLDEILDVVFSN 483 Query: 436 FCIGK 440 FCIGK Sbjct: 484 FCIGK 488 >gi|90194094|gb|ABD92608.1| ThdF [Actinobacillus ureae ATCC 25976] Length = 436 Score = 234 bits (598), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 155/437 (35%), Positives = 242/437 (55%), Gaps = 29/437 (6%) Query: 19 AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGE 78 + I+R+SGP +V + + K+ PR A+ F DG +LD+G+ + F +P SFTGE Sbjct: 7 GVGILRISGPLAQEVAKEVLGKELK-PRLANYLPFKDQDGTVLDQGIALFFKAPNSFTGE 65 Query: 79 DSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSE 138 D E HGG +++ +L+ + + +R+A GEFS +AF N K+DL +AE++ADLI + Sbjct: 66 DVLELQGHGGQMILDILLKRILAVKGVRIARAGEFSEQAFLNDKLDLAQAEAIADLIDAT 125 Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LND 195 +E R +++ + GE S+ Q +D + ++R+++EA +DF +EE + + ++ LND Sbjct: 126 SEQAARSALKSLQGEFSNKINQLVDSVIYLRTYVEAAIDFPDEE-IDFLADGKIEGHLND 184 Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255 I+ N + QG I+R G K+VI G NAGKSSL NALA +D AIVT+I GTTR Sbjct: 185 IIRQLNGVRKEAKQGA---ILREGMKVVIAGRPNAGKSSLLNALAGRDAAIVTNIAGTTR 241 Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 DVL + ++G + I DTAG+RE D VE+ GI+R + E+E AD +LL+ + + + Sbjct: 242 DVLCEHIHIDGMPLHIIDTAGLREASDEVERIGIQRAWDEIEQADHVLLMIDSTEQTAEA 301 Query: 316 F-----------PKNIDFIFIGTKSDLYSTYT--EEYDHL----ISSFTGEGLEELINKI 358 F P+NI I K DL S +E D +S+ T G++ L + Sbjct: 302 FKTEWADFLAKLPQNIPVTVIRNKVDLSSEAEGLQELDGFTLIRLSAQTKVGVDLLREHL 361 Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLASVSL 416 K + + + +RHL L +LE L + G +++AE LR+ +L Sbjct: 362 KKSMGYQ-SSTEGGFLARRRHLQALETAAEHLERGHIQLTQFFAG-ELLAEELRMVQNAL 419 Query: 417 GKITGCVDVEQLLDIIF 433 +ITG + LL IF Sbjct: 420 SEITGQFTSDDLLGNIF 436 >gi|148654184|ref|YP_001281277.1| tRNA modification GTPase TrmE [Psychrobacter sp. PRwf-1] gi|172048596|sp|A5WI36|MNME_PSYWF RecName: Full=tRNA modification GTPase mnmE gi|148573268|gb|ABQ95327.1| tRNA modification GTPase trmE [Psychrobacter sp. PRwf-1] Length = 465 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 161/470 (34%), Positives = 256/470 (54%), Gaps = 35/470 (7%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M H TI A++T + IIRLSGP + + + K+ PR AS F+ + + Sbjct: 1 MTHTT-TIAAIATPVGRGGVGIIRLSGPKAYAIACALTGKESFTPRLASFCRFYDANNNV 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+GL++ F +P SFTGED E HGG+ + N +L + ++ A GEFS RAF+N Sbjct: 60 LDEGLVLYFKAPHSFTGEDVIELQGHGGMILQNQLLARVFEL-GAHQAQAGEFSYRAFDN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DLL+AE++AD I + + ++ ++G S+ + ++ L +R ++EA +DF + Sbjct: 119 DKLDLLQAEAIADAIDATSAAAASSAIRSLTGAFSNKINEVLEALIELRLYVEASIDFPD 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EEDV S + + ++ +++ +S + G+++R+G +V+ G NAGKSSL N+LA Sbjct: 179 EEDVDFLSDGVIEGKLQRIQQQLTTILSTAQQGQLLRDGVHVVLAGRPNAGKSSLLNSLA 238 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTD+ GTTRD L + L G + ++DTAG+R+T D VE+ GI+R + AD Sbjct: 239 GQERAIVTDVAGTTRDTLQETIVLNGLTIHLTDTAGLRDTTDAVERIGIERARTAINQAD 298 Query: 301 LILLL----KEINSKKEIS--FPKNID---------FIFIGTKSDLYSTYTEEYDHL--- 342 L+LL+ +E++ K S F + ID + IG K DL E + L Sbjct: 299 LLLLVYDLSQEVDPLKLASELFGEGIDGTPNFDPSKLLLIGNKRDLVEDKGESANKLADK 358 Query: 343 ----------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM 392 +S T +G+ +LI + + F S+ + RHL L +T ++++ Sbjct: 359 ADILGYEQVNVSCETSQGIPQLIASLCDKVG--FHPPENSLIARTRHLDALRRTQQHVDE 416 Query: 393 A--SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A L G +++AE+LR SLG+ITG + LL IF FCIGK Sbjct: 417 AHQQLVIYQAG-ELVAESLRQGQYSLGEITGEFSADDLLGRIFGSFCIGK 465 >gi|312130569|ref|YP_003997909.1| tRNA modification gtpase trme [Leadbetterella byssophila DSM 17132] gi|311907115|gb|ADQ17556.1| tRNA modification GTPase trmE [Leadbetterella byssophila DSM 17132] Length = 444 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 156/448 (34%), Positives = 257/448 (57%), Gaps = 19/448 (4%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLDG-RILD 62 ++TI AV+T A++IIR+SGP + + + K K ++ Y +DG +++D Sbjct: 4 QDTICAVATPPGVGALAIIRVSGPEAISLVDAVFKGKSLKHAEGNTIVYGHIVDGEKVVD 63 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 + L+ VF +P SFTGEDS E HG ++ +++ L + R A PGEF++RAF NG+ Sbjct: 64 EVLVSVFRNPRSFTGEDSLEISTHGSPFIIRYVMKLLVQ-KGCRPAGPGEFTQRAFLNGR 122 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 +DL++AE++ADLI++++E + ++ + G S + L H S +E +LDF EE Sbjct: 123 LDLVQAEAVADLIAADSEAAHKTALNQLRGGFSRKLAILREDLIHFASLVELELDFGEE- 181 Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 DV+ ++ IL L++ I I + G I+ G+ + I+G NAGKS+L NAL + Sbjct: 182 DVEFADRDDLKALILNLQDQIRPLIQSFESGNAIKEGFPVAIIGAPNAGKSTLLNALLNE 241 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 D AIVTDI GTTRD++ L ++G + DTAGIRET+D++E GI+R+ +++A L+ Sbjct: 242 DRAIVTDIAGTTRDIIEDTLIIDGIKFRFIDTAGIRETEDLIEAMGIERSKKALQDARLV 301 Query: 303 LLLKEINSKKEISFPKNID--------FIFIGTKSDLYSTYTEEYDHLISSFTGEGLEEL 354 L L +S + F +++ ++ K+D+ + E + IS+ G+E L Sbjct: 302 LFL--YDSTQGYEFLQDLQGLIREDQTLFWVRNKTDIDESSIREGEIRISARAQVGIEAL 359 Query: 355 INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDIIAENLRLA 412 +I +++ K +I ++ RH HL++ L+ + L+ G D +A+++RLA Sbjct: 360 KKQISQSVAD-LKTTDTTI-TNVRHFDHLTKAYSALDDVLTGLHSGITG-DFLAQDIRLA 416 Query: 413 SVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LG+ITG + + LL IF KFCIGK Sbjct: 417 LHHLGEITGTISTDDLLKNIFGKFCIGK 444 >gi|170758742|ref|YP_001788985.1| tRNA modification GTPase TrmE [Clostridium botulinum A3 str. Loch Maree] gi|205829144|sp|B1KUB2|MNME_CLOBM RecName: Full=tRNA modification GTPase mnmE gi|169405731|gb|ACA54142.1| tRNA modification GTPase TrmE [Clostridium botulinum A3 str. Loch Maree] Length = 461 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 165/469 (35%), Positives = 264/469 (56%), Gaps = 42/469 (8%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--------KPFPRKASLRYFFG 55 E +TI AV+T ISIIR+SG + I K K KP+ S+RY F Sbjct: 3 EFDTITAVATPVGEGGISIIRISGDKSLDIVSSIFKGKNDRSLDDIKPY----SMRYGFI 58 Query: 56 LDGR---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGE 112 ++ I+D+ L+ P SFT ED+ E + HGG+ IL+EL K RLA PGE Sbjct: 59 IEKESKEIIDEVLVSYMKGPRSFTAEDTLEINCHGGVIPTKKILKELIK-SGARLAEPGE 117 Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172 F++RAF NG+IDL +AE++ D+I S+T++ + +++ G LS +++ I + I Sbjct: 118 FTKRAFLNGRIDLSQAEAVIDIIRSKTDLSMKSALKQAEGTLSKEINSIRNRMIKIIAHI 177 Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232 EA +D+ E+ D++ + +++ D+ + N I + IS + G+I+R G VI+G N GK Sbjct: 178 EATVDYPED-DLEEITGQKIKVDLKEIINKIDNLISASEEGKILREGLNTVIVGKPNVGK 236 Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292 SSL NAL ++ AIVT+IPGTTRDV+ ++++G +KI DTAGIRET+D+VEK G++++ Sbjct: 237 SSLLNALINENKAIVTEIPGTTRDVIEEYINIDGIPIKIVDTAGIRETEDVVEKIGVEKS 296 Query: 293 FLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF 346 +++ ADL++ + +++ K + + F KN +I + K DL EE +H I Sbjct: 297 KEKIDEADLVIFMLDLSRKIDEEDIEIMDFIKNKKYIVLLNKLDLNKDLNEE-NHFIKEL 355 Query: 347 -----------TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT----VRYLE 391 GL EL IK++ + K I ++ RH L ++ ++ +E Sbjct: 356 DSKYIIKTSVKNNSGLNELKECIKNLFFSGEIKSDELIVTNARHQEALIRSRESCIQAIE 415 Query: 392 MASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 S + +D+ + ++R A LG+ITG E ++D IFS+FC+GK Sbjct: 416 TLS---DEISIDLASIDIRNAWKYLGEITGDTLDENIIDKIFSEFCLGK 461 >gi|52082648|ref|YP_081439.1| tRNA modification GTPase TrmE [Bacillus licheniformis ATCC 14580] gi|52788047|ref|YP_093876.1| tRNA modification GTPase TrmE [Bacillus licheniformis ATCC 14580] gi|319648514|ref|ZP_08002730.1| tRNA modification GTPase mnmE [Bacillus sp. BT1B_CT2] gi|81384063|sp|Q65CN1|MNME_BACLD RecName: Full=tRNA modification GTPase mnmE gi|52005859|gb|AAU25801.1| ThdF protein - tRNA modification [Bacillus licheniformis ATCC 14580] gi|52350549|gb|AAU43183.1| ThdF [Bacillus licheniformis ATCC 14580] gi|317389593|gb|EFV70404.1| tRNA modification GTPase mnmE [Bacillus sp. BT1B_CT2] Length = 459 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 156/461 (33%), Positives = 258/461 (55%), Gaps = 29/461 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK----KKKPFPRKASLRYFFGLDG--- 58 +TI A+ST AI+I+R+SGP + + + K K+ ++ Y +D Sbjct: 2 DTIAAISTPMGEGAIAIVRMSGPEALAIADKVYKGPRGKRLSSVDSHTINYGHIVDPETE 61 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 +++++ ++ V +P++FT ED E + HGG+ VN +L+ L RLA PGEF++RAF Sbjct: 62 KVVEEVMVSVLKAPKTFTREDIVEINCHGGLVTVNQVLQ-LVLREGARLAEPGEFTKRAF 120 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG+IDL +AE++ DLI ++T+ ++M M G LSSL + ++ + +E ++D+ Sbjct: 121 LNGRIDLSQAEAVMDLIRAKTDRAMNVAMNQMEGRLSSLIKRLRAEILETLAHVEVNIDY 180 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E +DV+ + K ++ +K +I + ++ + G+I+R G VI+G N GKSSL N+ Sbjct: 181 PEYDDVEEMTHKMLIEKATKVKKEIEALLTTSEQGKILREGISTVIIGRPNVGKSSLLNS 240 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L + AIVTDIPGTTRDV+ +++ G +++ DTAGIRET+DIVE+ G++R+ ++ Sbjct: 241 LVHETKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDIVERIGVERSRQVLKE 300 Query: 299 ADLILLL---KEINSKKEISF---PKNIDFIFIGTKSDLYSTYTEEYDHL---------- 342 ADLILL+ E S ++I K +D I I K+DL + D + Sbjct: 301 ADLILLVLNYSESLSDEDIKLFEATKGMDIIVIVNKTDLEQKL--DLDRVRELAGNQPVV 358 Query: 343 -ISSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKD 399 S EG++EL I+S+ + + + S+ RH+ L + R + A E D Sbjct: 359 TTSLLKEEGIDELEEAIQSLFFTGAIESGDLTYVSNTRHISLLHEAKRAITDALEGIEND 418 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+I G E L+D +FS+FC+GK Sbjct: 419 VPIDMVQIDLTRCWEVLGEIIGDAVHESLIDQLFSQFCLGK 459 >gi|311032250|ref|ZP_07710340.1| tRNA modification GTPase TrmE [Bacillus sp. m3-13] Length = 462 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 160/462 (34%), Positives = 260/462 (56%), Gaps = 25/462 (5%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFG--LD- 57 +E +TI A+ST AI+I+RLSG F++ + F+ K AS +G +D Sbjct: 2 YEFDTIAAISTPMGEGAIAIVRLSGEEAFRIIDEIFVTPSSKKMKDVASHTIHYGHIVDP 61 Query: 58 --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 +I+++ ++ V P++FT ED E + HGG+ VN +L+ L RLA PGEF++ Sbjct: 62 KTDKIIEEVMVSVMRGPKTFTREDVVEINCHGGLVSVNKLLQ-LVLSRGARLAEPGEFTK 120 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG+IDL +AE++ DLI ++T+ +++ M G LS L + ++ + +E + Sbjct: 121 RAFLNGRIDLSQAEAVMDLIRAKTDRAMNVALGQMEGRLSKLIQKLRQEILETLAHVEVN 180 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +D+ E +DV+ + + +L ++K ++ + + G+I+R G VI+G N GKSSL Sbjct: 181 IDYPEYDDVEEMTHQLLLEKSTYVKEELEKLLQTSQQGKILREGLSTVIIGRPNVGKSSL 240 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N+L ++ AIVTDIPGTTRDV+ + + G +++ DTAGIRET+DIVE+ G++R+ Sbjct: 241 LNSLVHENKAIVTDIPGTTRDVIEEYVSVRGVPLRLVDTAGIRETEDIVERIGVERSREV 300 Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYS-----TYTEEYDH--L 342 ++ ADLILL+ N K+ K +D I I K+DL + E +H + Sbjct: 301 LKKADLILLVLNNNDDLTMEDKQLFEAVKGMDVIVIVNKTDLPTKIDIGQVKELANHHTV 360 Query: 343 ISSFTGE--GLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EK 398 IS+ E G++EL I S+ + + S+ RH+ ++Q + LE A + E Sbjct: 361 ISTSLKEEQGIDELEEAISSMFFQGDLEAGDMTYVSNSRHIGLITQAQQALEDAIVGMES 420 Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +DI+ +L LG+I G E L+D +FS+FC+GK Sbjct: 421 GVPIDIVQIDLTRTWEILGEIIGDAVHESLIDQLFSQFCLGK 462 >gi|138897067|ref|YP_001127520.1| tRNA modification GTPase TrmE [Geobacillus thermodenitrificans NG80-2] gi|196249888|ref|ZP_03148584.1| tRNA modification GTPase TrmE [Geobacillus sp. G11MC16] gi|166200479|sp|A4ITX1|MNME_GEOTN RecName: Full=tRNA modification GTPase mnmE gi|134268580|gb|ABO68775.1| Thiophen and furan oxidation [Geobacillus thermodenitrificans NG80-2] gi|196210764|gb|EDY05527.1| tRNA modification GTPase TrmE [Geobacillus sp. G11MC16] Length = 462 Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 158/463 (34%), Positives = 258/463 (55%), Gaps = 29/463 (6%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFI-----CKKKKPFPRKASLRYFFGLD- 57 E +TI A+ST AI+I+RLSG ++ + + K+ K P ++ Y +D Sbjct: 3 EFDTIAAISTPMGEGAIAIVRLSGDEAVEIADRLFRSPTGKQLKDVPSH-TIHYGHIVDP 61 Query: 58 --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 GRI+++ ++ V +P++FT ED E + HGG VN +L+ L RLA PGEF++ Sbjct: 62 KSGRIVEEVMVSVMRAPKTFTREDVVEINCHGGFVSVNRVLQ-LVLANGARLAEPGEFTK 120 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG+IDL +AE++ DLI ++T+ ++++ M G LS L + + + +E + Sbjct: 121 RAFLNGRIDLSQAEAVIDLIRAKTDRAMNVALQQMEGRLSKLIRELRQTILETLAHVEVN 180 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +D+ E +DV+ + + + +++ I +S G+I+R G VI+G N GKSSL Sbjct: 181 IDYPEYDDVEEMTPRLLKEKAEYVRGQIEKLLSTATQGKILREGLATVIIGRPNVGKSSL 240 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 NALA ++ AIVTDIPGTTRDV+ +++ G +++ DTAGIRET+DIVE+ G++R+ Sbjct: 241 LNALAHENRAIVTDIPGTTRDVIEEYVNVRGVPLRLIDTAGIRETEDIVERIGVERSRQM 300 Query: 296 VENADLILLLKEINS------KKEISFPKNIDFIFIGTKSDLYSTY-TEEYDHL------ 342 ++ ADLILL+ + ++ + + +D I I K+DL E L Sbjct: 301 LKKADLILLVLNYHEPLTEEDERLFAMTEGMDVIVIVNKTDLPQNIDIERVKELAAGRPI 360 Query: 343 --ISSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399 S G++EL I + + + + S+ RH+ L Q + +E A L+ D Sbjct: 361 VATSLLCERGIDELEKAIADLFFGGELEAGDLTYVSNSRHIALLEQAKKAIEDA-LSGID 419 Query: 400 CGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G+ D++ +LR A LG+I G E L+D +F++FC+GK Sbjct: 420 VGMPVDLVQIDLRRAWELLGEIVGDTVHESLIDQLFAQFCLGK 462 >gi|90194106|gb|ABD92614.1| ThdF [Actinobacillus equuli subsp. haemolyticus] Length = 436 Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 156/440 (35%), Positives = 244/440 (55%), Gaps = 33/440 (7%) Query: 18 SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77 + I+R+SGP +V + + K+ PR A+ F DG +LD+G+ + F +P SFTG Sbjct: 6 GGVGILRISGPLAQEVAKEVLGKELK-PRLANYLPFKDQDGTVLDQGIALFFKAPNSFTG 64 Query: 78 EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137 ED E HGG +++ +L+ + + +R+A GEFS +AF N K+DL +AE++ADLI + Sbjct: 65 EDVLELQGHGGQVILDILLKRILAVKGVRIARAGEFSEQAFLNDKLDLAQAEAIADLIDA 124 Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LN 194 +E R +++ + GE S+ Q +D + ++R+++EA +DF +EE + + ++ LN Sbjct: 125 TSEQAARSALKSLQGEFSNKINQLVDSVIYLRTYVEAAIDFPDEE-IDFLADGKIEGHLN 183 Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254 DI+ N + QG I+R G K+VI G NAGKSSL NALA ++ AIVT+I GTT Sbjct: 184 DIIRQLNGVRKEAKQGA---ILREGMKVVIAGRPNAGKSSLLNALAGREAAIVTNIAGTT 240 Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314 RDVL + ++G + I DTAG+RE D VEK GI+R + E+E AD +LL+ I+S ++I Sbjct: 241 RDVLREHIHIDGMPLHIIDTAGLREASDEVEKIGIQRAWDEIEQADHVLLM--IDSTEQI 298 Query: 315 S-------------FPKNIDFIFIGTKSDLYSTYT--EEYDHL----ISSFTGEGLEELI 355 + P+NI I K DL +E D +S+ T G++ L Sbjct: 299 AEAFKTEWADFLAKLPQNIPVTVIRNKVDLSGEAEGLQELDGFTLIRLSAQTKVGVDLLR 358 Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLAS 413 +K + + + +RHL L +LE L + G +++AE LR+ Sbjct: 359 EHLKKSMGYQ-SSTEGGFLARRRHLQALETAAEHLERGHIQLTQFFAG-ELLAEELRMVQ 416 Query: 414 VSLGKITGCVDVEQLLDIIF 433 +L +ITG + LL IF Sbjct: 417 NALSEITGQFTSDDLLGNIF 436 >gi|114762196|ref|ZP_01441664.1| tRNA modification GTPase [Pelagibaca bermudensis HTCC2601] gi|114545220|gb|EAU48223.1| tRNA modification GTPase [Roseovarius sp. HTCC2601] Length = 373 Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 149/383 (38%), Positives = 216/383 (56%), Gaps = 12/383 (3%) Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 +LD+ L+++F SFTGE AEFHVHG +A+ +L EL +M LR+A GEF+RRA E Sbjct: 1 MLDEALVLLFSKGASFTGEAVAEFHVHGSVAIQRAVLRELEEMDGLRMAEAGEFTRRALE 60 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 N ++DL + E+LADLI SETE QR ++ +G L W L H S +E +DF+ Sbjct: 61 NDRLDLTQVEALADLIESETESQRVQALRVFAGALGERVEDWRRDLVHAASLLEVTIDFA 120 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 +EE V S EV + + + I E IR G+++ I+G N GKSSL NAL Sbjct: 121 DEE-VPVDVSGEVREFLARVIAGLDREIRGMDGAERIRTGFEVAIVGAPNVGKSSLLNAL 179 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 A +D AI ++I GTTRDV+ + +++ G V + DTAG+RET D VE+ GI R + Sbjct: 180 AGRDAAITSEIAGTTRDVIEVRMEIAGLPVTLLDTAGLRETQDPVEQIGIARARDRAMTS 239 Query: 300 DLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIK 359 DL ++L + + F + I + +K+DL IS+ TG+GL+ LI++I Sbjct: 240 DLRVILS--DERGMPDFDVSDGDIVLRSKADLAGEA-----EGISAKTGQGLDALISEIG 292 Query: 360 SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDIIAENLRLASVSLG 417 LS+K + + + +RH + LE ++ L D+ AE +R A +L Sbjct: 293 ERLSDKVQ--AAGLATRERHRVAFLEGRIALEDAISLLARGPDSYDLAAEEIRAAIRALE 350 Query: 418 KITGCVDVEQLLDIIFSKFCIGK 440 + G +DVE LLD IFS FCIGK Sbjct: 351 LLIGRIDVENLLDEIFSSFCIGK 373 >gi|152990630|ref|YP_001356352.1| tRNA modification GTPase TrmE [Nitratiruptor sp. SB155-2] gi|172048731|sp|A6Q3D6|MNME_NITSB RecName: Full=tRNA modification GTPase mnmE gi|151422491|dbj|BAF69995.1| tRNA modification GTPase TrmE [Nitratiruptor sp. SB155-2] Length = 448 Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 155/454 (34%), Positives = 253/454 (55%), Gaps = 20/454 (4%) Query: 1 MNHEKE-TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR 59 MN E TI A++T +I+I+R+SGP + + + KKK PR A L + Sbjct: 1 MNFENNSTIAAIATAYGVGSIAIVRISGPKSLSIAQKLSKKKDIQPRVAHLVTLYDDQSE 60 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 +D+ +LI F +P+SFTGED EF HGG+ V N IL+EL K RLANPGEFS+RAF Sbjct: 61 PIDQAILIYFQAPKSFTGEDVVEFQCHGGVVVANMILQELLK-AGARLANPGEFSKRAFF 119 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NGKIDL EAE++A +I +++E ++ + + GEL + +KL I +++E ++D++ Sbjct: 120 NGKIDLSEAEAIAKMIEAKSEDAAKILAKQIKGELKNYIENLREKLIRILAYVEVNIDYA 179 Query: 180 EEEDVQNFSSK--EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 EE+ ++ + + LNDI + ++ ++ K + G+K+ I+G N GKSSL N Sbjct: 180 EEDLPKDLQEQIEQQLNDI---QEELQKIVASSKRRAGLIEGFKVAIIGKPNTGKSSLLN 236 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 AL + AIV+DI GTTRD + + + +LV+ DTAGIRE D +EK GI+R+ +E Sbjct: 237 ALLDYERAIVSDIAGTTRDTIEESVRIGTHLVRFVDTAGIREAHDTIEKIGIERSIQAIE 296 Query: 298 NADLILLL----KEINSK-KEI-----SFPKNIDFIFIGTKSDLYSTYT-EEYDHLISSF 346 +D+++ + K ++++ K+I S+ +FI + K D ++D L S Sbjct: 297 ESDIVIAMFDASKPLDAEDKKILELIESYKDQKEFIVVANKVDKGKHLDLSDFDALYMSV 356 Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIA 406 E + L K++ +L + F + R + ++ + + A + L+I A Sbjct: 357 KKE-ITPLTQKLQKLL-DSFANTEEIMLVTSRQIEAVTYALENINQARTPLQMGELEIFA 414 Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++ S+G IT + +LLD +F +FC+GK Sbjct: 415 FHINRVIESIGSITRPMQSSELLDKMFGEFCLGK 448 >gi|171693857|ref|XP_001911853.1| hypothetical protein [Podospora anserina S mat+] gi|170946877|emb|CAP73681.1| unnamed protein product [Podospora anserina S mat+] Length = 520 Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 176/523 (33%), Positives = 264/523 (50%), Gaps = 95/523 (18%) Query: 2 NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF-PRKASLRYFFGL---- 56 N +TI+A+S+GA + I++IR+SGP V + +C K P PR A +R Sbjct: 4 NENDDTIYALSSGAGKAGIAVIRISGPGSLSVYKALCPTKPPPKPRYAGVRTLLDPASAN 63 Query: 57 --DGRILDK-GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN---LRLANP 110 +G ILD L++ FP P++ TGED E HVHGG A + +L + K +R A P Sbjct: 64 LPNGNILDSDSLILYFPGPKTVTGEDVLELHVHGGSATIKAVLAAIPKCSTTGKVRYAEP 123 Query: 111 GEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRS 170 GEF+RRAF NG++DL + ESL D + + TE QRR++++G SG L Y +W ++L R Sbjct: 124 GEFTRRAFLNGRLDLAQVESLGDTLDAVTEQQRRVAVQGNSGVLGKTYERWREELLLARG 183 Query: 171 FIEADLDFSEEEDVQNF--SSKEVLNDILFLKNDISSHISQGKLG----EIIRNGYKIVI 224 IEA +DFSE+ Q+F S E+L ++ L I I+ KLG E++RNG +I + Sbjct: 184 EIEALIDFSED---QHFDESPTELLTNVRRLVEGILHSINMHKLGSQKSELLRNGIRIAL 240 Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--ETDD 282 LG NAGKSSL N + ++ +IV+ GTTRDV+ +LD+ GYL +DTAGIR T Sbjct: 241 LGPPNAGKSSLMNQIVGREASIVSSEAGTTRDVIEANLDIRGYLCSFADTAGIRTESTRS 300 Query: 283 I-------------VEKEGIKRTFLEVENADLILLLKEINSKK----EISF--------P 317 I +E+EGI+R + ++D++++L + + K +IS+ Sbjct: 301 IANLDGDSSPVIGAIEQEGIRRARQKAMDSDIVIVLASVEAVKGGGHQISYDVETLKLAA 360 Query: 318 KNIDFIFIGTKSDLYSTYTEEYDHLISSFTG---------EGLEEL-------------- 354 + KSD+ E + LI F +G E L Sbjct: 361 AAQQCLVAVNKSDVVE--RETLEPLIQGFKSSALGSVQGLQGAEPLTISCKAAATAAAGL 418 Query: 355 -----INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR--------YLEMASLNEKDCG 401 ++ + L F +L S+P HL +++ +LE + CG Sbjct: 419 TDPGGVHTLTERLVQSFSEL-TSLPGDVHHLLGVTERQNQLLFECQMHLEGFMTEAQACG 477 Query: 402 L----DII--AENLRLASVSLGKITG---CVDVEQLLDIIFSK 435 D++ AE+LRLA+ L ITG DVE++L +IF K Sbjct: 478 AGREPDVVLAAEHLRLAANRLACITGRGDSGDVEEVLGVIFEK 520 >gi|67922416|ref|ZP_00515927.1| tRNA modification GTPase TrmE:Small GTP-binding protein domain:GTP-binding [Crocosphaera watsonii WH 8501] gi|67855760|gb|EAM51008.1| tRNA modification GTPase TrmE:Small GTP-binding protein domain:GTP-binding [Crocosphaera watsonii WH 8501] Length = 460 Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 162/464 (34%), Positives = 251/464 (54%), Gaps = 37/464 (7%) Query: 4 EKETIFAVSTGALPS--AISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL--- 56 + ETI A++T +P +I IIRLSG + + FI P+ S +G Sbjct: 7 QGETIAAIATAIVPQQGSIGIIRLSGNKALSIAKTLFIAPGN---PKWQSHSILYGYIRH 63 Query: 57 --DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114 +++D+ LL++ +P S+T ED EFH HGGI V +L+ L LA PGEF+ Sbjct: 64 PQSQQVIDEALLLIMLAPRSYTREDVIEFHCHGGIMPVQQVLQ-LCIEQGATLAQPGEFT 122 Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTH----IRS 170 RAF NG+IDL +AES+++L+ + ++ ++++ G+ G+L+ Q + KL H I + Sbjct: 123 LRAFLNGRIDLTQAESISELVGARSQQASQMALAGLQGKLA----QPLQKLRHHCLDILA 178 Query: 171 FIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNA 230 IEA +DF EED+ K + + + + + ++ + GE++RNG K+ I+G N Sbjct: 179 EIEARIDF--EEDLPPLDKKAISQGLETILEQVQTILNTAERGELLRNGLKVAIVGRPNV 236 Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIK 290 GKSSL NA ++ D AIVTD+PGTTRDV+ L + G +++ DTAGIR+T D VEK G++ Sbjct: 237 GKSSLLNAWSRSDRAIVTDLPGTTRDVIESQLVVGGIPIQVLDTAGIRQTTDQVEKIGVE 296 Query: 291 RTFLEVENADLILLLKE---INSKKEISFPKNID---FIFIGTKSDLYSTYTEEYDHLIS 344 R+ L ADL+LL + + S ++ + I+ I + K DL + ++ IS Sbjct: 297 RSQLAASQADLVLLTVDATVVWSNQDNEIYQAIEHRPVILVINKIDLATPDLAQFPTQIS 356 Query: 345 SFT------GEGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE 397 +G+E L I K+I +K ++R L++ LE Sbjct: 357 EIVKTSAANNQGIEALETAILKAIHQDKLTASNLDFAINQRQSAALTRAKISLEQVQTTI 416 Query: 398 K-DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 K + LD +LR A +LG+ITG E +LD IFS+FCIGK Sbjct: 417 KEELPLDFWTIDLRSAIQALGEITGEEITESVLDRIFSRFCIGK 460 >gi|167627608|ref|YP_001678108.1| tRNA modification GTPase TrmE [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|189036203|sp|B0TYD1|MNME_FRAP2 RecName: Full=tRNA modification GTPase mnmE gi|167597609|gb|ABZ87607.1| GTPase of unknown function [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 450 Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 148/454 (32%), Positives = 248/454 (54%), Gaps = 21/454 (4%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62 + K+TI AV+T I I+R+SG + E + KK+ PR A+ + ++ I+D Sbjct: 2 YTKDTIVAVATPQGNGGIGIVRISGSDALSIAEKLTKKRLK-PRYATFCNIYNIN-EIID 59 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 G++I F SP S+TGED E HG ++N I++ + R+AN GEF+ RAF N K Sbjct: 60 HGIVIFFNSPNSYTGEDVVEIQAHGNPFILNLIIKATLEY-GARMANAGEFTERAFLNNK 118 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 +DL +AE++AD+I++ +E + + + + G+ S ++KL ++R ++EA +DF EEE Sbjct: 119 LDLTQAEAVADIINASSETAAKSAAKSLQGDFSKEINNLLEKLIYLRMYVEASIDFPEEE 178 Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 + +++ N + + I + K G I+ G ++++G NAGKSSL NALA K Sbjct: 179 -INFLEDQKIHNSLQDIYKTILDVKNSCKQGAILVEGITLILVGKPNAGKSSLLNALAGK 237 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 + AIVT I GTTRD++ + + G + I DTAG+R +DDI+E EGIKR +++ AD I Sbjct: 238 ESAIVTSIAGTTRDIVKEHIQINGVPMHIIDTAGLRSSDDIIESEGIKRAIKKIQEADQI 297 Query: 303 LLLKEINSKKEISF--------------PKNIDFIFIGTKSDLYSTYTEEYDH--LISSF 346 L + + + ++ F PK+ID ++ K DL +D+ IS+ Sbjct: 298 LFVTDDYTNSQVKFSDIKDIIPEFYHQIPKDIDITYVHNKIDLLKEVPLNHDNHIYISAE 357 Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIA 406 + G+++L + I + + + + +RH+ + ++++A + +++A Sbjct: 358 SNIGIDKLKDHILAKVGYTTQNESI-YTARERHVTAIDNAFDHIKLAKEQLELGNGELLA 416 Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E L + L ITG + LL IFS FCIGK Sbjct: 417 EELLIVQEHLNSITGEFSSDDLLGEIFSSFCIGK 450 >gi|171061051|ref|YP_001793400.1| tRNA modification GTPase TrmE [Leptothrix cholodnii SP-6] gi|205415776|sp|B1Y0F6|MNME_LEPCP RecName: Full=tRNA modification GTPase mnmE gi|170778496|gb|ACB36635.1| tRNA modification GTPase TrmE [Leptothrix cholodnii SP-6] Length = 479 Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 153/483 (31%), Positives = 241/483 (49%), Gaps = 48/483 (9%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF-PRKASLRYFFGLDGR 59 + E I A++T A+ I+R+SG + + + P PR AS F G Sbjct: 2 LPRHHEPIAAIATAPGRGAVGIVRVSGRGLTALATALVGR--PLRPRVASYGPFLDRQGG 59 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEEL------------AKMPNLRL 107 +D+GL + FP+P S+TGED E HGG V+ +L ++P LRL Sbjct: 60 AIDRGLALHFPAPHSYTGEDVLELQAHGGPVVLQLLLARCLEAAGEIGTDGRPRLPGLRL 119 Query: 108 ANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTH 167 A PGEF+ RA+ N K+DL +AE++ADLI + TE R + +SG+ S D L Sbjct: 120 AQPGEFTERAYLNDKLDLAQAEAVADLIDASTEAAARSAARSLSGDFSRQITHLRDGLIE 179 Query: 168 IRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227 +R+ +EA LDF EEE + + + L ++ + + G ++R G ++VI G Sbjct: 180 LRALVEATLDFPEEE-IDFLQRADAHGRLARLAERLAGLLDTARQGALLREGLRVVIAGQ 238 Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---ETDDIV 284 NAGKSSL NALA ++AIVT IPGTTRD ++ + +EG V + DTAG+R + D V Sbjct: 239 PNAGKSSLLNALAGAELAIVTPIPGTTRDKISETIQIEGVPVHVIDTAGLRSDEQAGDEV 298 Query: 285 EKEGIKRTFLEVENADLILLLKEINSKKEISF-----------PKNIDFIFIGTKSDLYS 333 E+ GI R++ + AD +LLL ++ + E ++ P ++ I + K+D Sbjct: 299 ERIGISRSWQAIAEADAVLLLHDLTREHEPAYSAADTAIAQRLPADVGLIHVHNKADAAP 358 Query: 334 TYT-------------EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI-PSHKRH 379 + ++S+ T +G++ + + + P + + +RH Sbjct: 359 EQAARVAARLAARQAGDAAGVVLSARTHDGID--ALRAALLARAGWHAAPEGVFIARERH 416 Query: 380 LYHLSQTVRYLEMAS--LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFC 437 + L ++ A + D LD++AE LR A +L +ITG + LL IF +FC Sbjct: 417 VRALRAAATHVTAAQGWAEQSDSALDLLAEELRSAHDALAEITGSYSSDDLLGDIFGRFC 476 Query: 438 IGK 440 IGK Sbjct: 477 IGK 479 >gi|37522021|ref|NP_925398.1| tRNA modification GTPase TrmE [Gloeobacter violaceus PCC 7421] gi|46577365|sp|Q7NHT3|MNME_GLOVI RecName: Full=tRNA modification GTPase mnmE gi|35213020|dbj|BAC90393.1| glr2452 [Gloeobacter violaceus PCC 7421] Length = 453 Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 157/456 (34%), Positives = 247/456 (54%), Gaps = 26/456 (5%) Query: 6 ETIFAVSTGALPS--AISIIRLSGPSCFQVCE--FICKKKKPF-PRKASLRYFFGLDGRI 60 +TI A++T +P ++ I+RLSG + + F + K+ F + +F DG I Sbjct: 3 DTICAIATAIVPQQGSVGIVRLSGSEALALAKRVFRLRGKQAFESHRIHYGHFLDADGGI 62 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+ L++ +P SFT ED EFH HGGIAV+ IL ++ RLA PGEF+ RAF N Sbjct: 63 LDECLVLYMQAPRSFTREDVVEFHCHGGIAVIQQILRRCVEL-GARLARPGEFTLRAFLN 121 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G+IDL EAE++A+L+S+ + RL++ G++G+L+ Q + + +EA LDF Sbjct: 122 GRIDLTEAEAVAELVSARSPEAARLAVGGLAGKLAGEVRQLRSGCLDLLAELEARLDF-- 179 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E+D+ + V +I ++ GE++R G K+ I+G N GKSSL NA + Sbjct: 180 EDDLPPLDTGAVRANIGQSLAHARRLMATSTRGELLRTGLKVAIVGRPNVGKSSLLNAWS 239 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 + D AIVTD+PGTTRDV+ L+++G V++ DTAGIRE D VE+ GI+R+ AD Sbjct: 240 RTDRAIVTDLPGTTRDVVESMLNVQGIPVQVLDTAGIREATDTVERIGIERSHAAAREAD 299 Query: 301 LILLLKEINSKKEISFPKNIDF--------IFIGTKSDLYS--TYTEEYDHLISSFTGEG 350 L+LL+ I+ + + + F I + KSDL YT L + T Sbjct: 300 LVLLV--IDRTEGWTCADSDIFAQVRERPVIVVVNKSDLEGPPVYTPSRGVLATVPTAAP 357 Query: 351 LEELINKIKSILSNKFKKLPFSIP------SHKRHLYHLSQTVRYLEMASLNEKDCGLDI 404 + + I+ ++ + + FS+ + +++ + V + + E +D Sbjct: 358 VGDGIDALEGAILAALGQEAFSVADGDFAVNERQYEALVRAEVALVRVVETVEAALPIDF 417 Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +LR A+ +LG++TG E +L+ IFSKFCIGK Sbjct: 418 WTIDLRAAAHALGEVTGESVTEAVLERIFSKFCIGK 453 >gi|226355396|ref|YP_002785136.1| tRNA modification GTPase TrmE [Deinococcus deserti VCD115] gi|226317386|gb|ACO45382.1| putative tRNA modification GTPase [Deinococcus deserti VCD115] Length = 439 Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 147/450 (32%), Positives = 234/450 (52%), Gaps = 33/450 (7%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----LDGRIL 61 +TI A++T + + I+R+SGP V + I ++ R R+ FG DG +L Sbjct: 8 DTIAAIATAPGSAGVGIVRVSGPEALTVADGIFSGRRTPSRIRGGRFVFGQLIAADGEVL 67 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121 D+GL +VF P S+TGED AE HG AV+ +L + ++ RLA PGEF+ RA+ +G Sbjct: 68 DEGLCLVFRRPHSYTGEDVAELQTHGSPAVLGRVLSRVLEL-GARLARPGEFTLRAYLSG 126 Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181 ++DL +AE++ L+ ++T+ RR + G+SG L + + +T + ++A LD+ EE Sbjct: 127 RLDLAQAEAVLGLVEAQTDAARRQASLGLSGALGTRVARIGANITRTLAAVQAMLDYPEE 186 Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 ++ + + D+S + + G++ G ++ ++G N GKSSL NAL Sbjct: 187 ----GVPEEDRELPLQAAEQDLSELVQSARAGQVATRGARLALIGRPNVGKSSLLNALLG 242 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 + +IVT IPGTTRD L ++L G V + DTAGIR T D VE G+++ ADL Sbjct: 243 YERSIVTPIPGTTRDYLEAGVELAGVPVTLVDTAGIRHTTDQVEAAGVRQAVALAGAADL 302 Query: 302 ILLLKEINSKKE---ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKI 358 +L L++ +E P+ I + TK+DL + + +S+ TGEGL EL I Sbjct: 303 VLALEDGQQPREPLPTELPEGARVIRVQTKADLEPAWNDPGALRVSAVTGEGLPELREAI 362 Query: 359 KSIL------SNKFKKLPFSIPSHKRHLYHLSQTVRYL--EMASLNEKDCGLDIIAENLR 410 + L S + + +R L H+ Q R L ++AS + E LR Sbjct: 363 HAALLGDAARSEAWLTTERQADAARRALGHV-QAARTLPDDLASWE--------LEEALR 413 Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +L +TG E ++D +F FC+GK Sbjct: 414 ----ALSDLTGRDVQEDVVDAVFRNFCVGK 439 >gi|116072006|ref|ZP_01469274.1| tRNA modification GTPase [Synechococcus sp. BL107] gi|116065629|gb|EAU71387.1| tRNA modification GTPase [Synechococcus sp. BL107] Length = 451 Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 147/445 (33%), Positives = 251/445 (56%), Gaps = 34/445 (7%) Query: 18 SAISIIRLSGPSCFQVCEFI--CKKKKPFPRKASLRYFFG----LDG-RILDKGLLIVFP 70 I++IRLSGP QV + + C ++ + S R +G +DG R LD+ LL++ Sbjct: 19 GGIAVIRLSGPVAEQVGQAVVRCPGRQEW---GSHRILYGHVMAVDGQRRLDEVLLLLMR 75 Query: 71 SPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAES 130 +P SFTGED E H HGG+ V ++E + + P +R A PGEFS+RA NG++DL +AE+ Sbjct: 76 APRSFTGEDVVEIHCHGGVMAVQQVMERVLEQPGVRRALPGEFSQRAVLNGRLDLTQAEA 135 Query: 131 LADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186 ++ L+S+ + L+M G+ G +++L + +D+LT + EA +DF E+D+ Sbjct: 136 VSALVSARSRRAADLAMAGLDGGIQARITALRERLLDQLTEL----EARVDF--EDDLPP 189 Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246 +LN++ ++ ++ + ++ G+ G+ +R+G ++ ++G N GKSSL N L++++ AI Sbjct: 190 LDGTALLNELQAVRTELLALVADGERGDALRHGLRVALVGRPNVGKSSLLNRLSRRERAI 249 Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL- 305 VT++PGTTRD+L ++ L+G + + DTAGIR T+D VE+ GI R+ + +ADL+LL+ Sbjct: 250 VTELPGTTRDLLESEIVLDGVPITLMDTAGIRATNDAVEQLGIARSEEALMSADLVLLIV 309 Query: 306 ------KEINSKKEISFPKNIDFIFIGTKSDL-YSTYTEEYDHLISSFTGEGLEELINK- 357 E +++ P + + + KSDL E D S+ G G + L+ Sbjct: 310 DGHAGWTETDAQLLARIPNAVPRVVVANKSDLDGPPLPREVDVQFSALNGAGEDALVQVL 369 Query: 358 IKSILSNKFKKLPFSIPSHKRH--LYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVS 415 ++ + + S+ + +R + R E+A ++ D +LR A Sbjct: 370 LERCGAGDAAAIVLSLNTRQRDLASAAAAALARSHEVA---QQQLPWDFWTIDLREAIRG 426 Query: 416 LGKITGCVDVEQLLDIIFSKFCIGK 440 LG+ITG E +L+ +FS+FCIGK Sbjct: 427 LGEITGEELTEAVLERVFSRFCIGK 451 >gi|17232169|ref|NP_488717.1| tRNA modification GTPase TrmE [Nostoc sp. PCC 7120] gi|21363007|sp|Q8YN91|MNME_ANASP RecName: Full=tRNA modification GTPase mnmE gi|17133814|dbj|BAB76376.1| thiophen / furan oxidation protein [Nostoc sp. PCC 7120] Length = 459 Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 160/460 (34%), Positives = 244/460 (53%), Gaps = 32/460 (6%) Query: 7 TIFAVSTGALPS--AISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL-----D 57 TI A++T +P ++ I+R+SG + + F K+ + S R +G Sbjct: 6 TIAAIATAIVPQQGSVGIVRVSGSQAIAIAQTLFDAPGKQVWE---SHRILYGYIRHPQT 62 Query: 58 GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 +I+D+ LL++ +P S+T ED EFH HGGI V +L+ L RLA PGEF+ RA Sbjct: 63 RQIVDEALLLLMKAPRSYTREDVVEFHCHGGIIAVQQVLQ-LCLESGARLAQPGEFTLRA 121 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NG++DL +AES+ADL+ + + + ++ G+ G+L+ Q I + IEA +D Sbjct: 122 FLNGRLDLTQAESIADLVGARSPQAAQTALAGLQGKLAHPIRQLRANCLDILAEIEARID 181 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 F EED+ + +++DI + +IS ++ GE++R G K+ I+G N GKSSL N Sbjct: 182 F--EEDLPPLDDEAIISDIENIAAEISQLLATKDKGELLRTGLKVAIVGRPNVGKSSLLN 239 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 A ++ D AIVTD+PGTTRDV+ L + G V++ DTAGIRET D VEK G++R+ Sbjct: 240 AWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAAN 299 Query: 298 NADLILLLKE-----INSKKEI-SFPKNIDFIFIGTKSDLYST-------YTEEYDHLIS 344 ADL+LL + +EI K+ I + K DL Y E ++ Sbjct: 300 TADLVLLTIDAATGWTTGDQEIYEQVKHRPLILVMNKIDLVEKQLITSLEYPENITQIVH 359 Query: 345 SFTG--EGLEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDC 400 + +G++ L I I+ + K + + ++R L+Q LE + Sbjct: 360 TAAAQKQGIDSLETAILEIVQTGKVQAADMDLAINQRQAAALTQAKMSLEQVQATITQQL 419 Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LD +LR A +LG+ITG E +LD IFS+FCIGK Sbjct: 420 PLDFWTIDLRGAIQALGEITGEEVTESVLDRIFSRFCIGK 459 >gi|77748780|ref|NP_644664.2| tRNA modification GTPase TrmE [Xanthomonas axonopodis pv. citri str. 306] Length = 446 Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 150/450 (33%), Positives = 245/450 (54%), Gaps = 14/450 (3%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+ TI A+++ A + I+RLSGP Q+ + + PR A F G + Sbjct: 1 MSSSTSTIVAIASAAGIGGVGIVRLSGPQSVQIAAHLGIARMQ-PRHAHYARFRDGHGAV 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D G+ + F +P SFTGED E HG ++ ++ ++ R A GEFS RAF N Sbjct: 60 IDDGIALWFNAPHSFTGEDVVELQGHGSPVLLRQLVARCIEL-GARQARAGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GK+DL +AE++ADLI++ R + + G S + LT +R +EA +DF++ Sbjct: 119 GKLDLAQAEAIADLIAAGDLRAARAARRALDGVFSQRVDALAETLTRLRIHVEAAIDFAD 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E + +V + + +N ++ + + G +R+G V++G NAGKSSL NALA Sbjct: 179 EP-LDTLGGNQVRDGLGQARNVLAQLLRDAERGRKLRDGLHAVLIGPPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 D AIVTD+ GTTRD L + L+G+ + + DTAG+R+ D +E+EG++R E+E AD Sbjct: 238 GSDRAIVTDVAGTTRDTLHEAIQLDGFELTLVDTAGLRDGGDAIEREGMRRARAELERAD 297 Query: 301 LILLL---KEINSKKEISFPKNIDFI----FIGTKSDLYSTYT--EEYDHLISSFTGEGL 351 L L++ +++ + ++ + ID + +I K DL + +S+ TG+GL Sbjct: 298 LALVVLDARDLQAARD-AIGDAIDTVPRQLWIHNKCDLLGNAASLDANAIAVSAVTGQGL 356 Query: 352 EELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLR 410 E+L +++++ L + + + RH+ L + ++ + A L L++ AE LR Sbjct: 357 EQLHIRLRALALGDGVDSVDGEFSARTRHVQALRRAEQHADAADLELGFEQLELAAEELR 416 Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LA +LG+ITG + + LL IFS FCIGK Sbjct: 417 LAHEALGEITGKLSADDLLGKIFSSFCIGK 446 >gi|78778577|ref|YP_396689.1| tRNA modification GTPase TrmE [Prochlorococcus marinus str. MIT 9312] gi|123554736|sp|Q31CZ2|MNME_PROM9 RecName: Full=tRNA modification GTPase mnmE gi|78712076|gb|ABB49253.1| tRNA modification GTPase trmE [Prochlorococcus marinus str. MIT 9312] Length = 460 Score = 234 bits (596), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 168/447 (37%), Positives = 242/447 (54%), Gaps = 35/447 (7%) Query: 19 AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DGRILDKGLLIVFPSPE 73 ++IIR+SG C+ I + K + + S R F G + +D+ L++V SP Sbjct: 24 GVAIIRVSGKDSINSCKKIVQTKSKYAWE-SHRVFHGFILENKQNKFIDEVLILVMKSPN 82 Query: 74 SFTGEDSAEFHVHGGIAVVNGILEEL-AKMPNLRLANPGEFSRRAFENGKIDLLEAESLA 132 SFTGED E H HGGI +VN +L+ L + +RLANPGEFS+RAF NGKIDL +AES+ Sbjct: 83 SFTGEDVVELHCHGGIILVNKVLQRLLSSNSRVRLANPGEFSQRAFLNGKIDLTQAESIN 142 Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192 LI++ L+ G+ G++ + L + IEA +DF EED +F + Sbjct: 143 QLINASNTRSAELAFSGVQGKIKKKINDIKNDLINQLCEIEARVDF--EEDFTDFDYNKY 200 Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252 L +I +K I I K I NG I ++G +N GKSSL N LAKK+ AIVT+IPG Sbjct: 201 LKNIKKVKEKIELLIENAKRNSYIHNGISIALIGKTNVGKSSLLNLLAKKEKAIVTNIPG 260 Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI---- 308 TTRDV+ ++L + +KI DTAGIRET + +E GIK++F +++ +D I+ + + Sbjct: 261 TTRDVIEVNLTINDIPMKIIDTAGIRETHEQIESIGIKKSFRKIKESDFIIYIYSLEEGF 320 Query: 309 --NSKKEIS-FPKNIDFIFIGTKSDLYSTYTEEYDH-----LISSFTGEGLEELINKIKS 360 KK I PK +G K DL + L+S +G LI+ I Sbjct: 321 NKEDKKIIQEIPKEKLITILGNKKDLIDCKNINSNELKNTILMSIKNNDGERLLIDTI-- 378 Query: 361 ILSNKFKKLP-FSIPSHKRHLYHLSQTVRYLEMASLNEKDC------GLDIIAENLRLAS 413 I K++ +I ++RHL +LS +++LN+ D D+++ LR Sbjct: 379 IKKCGLKQVENINIFLNERHLTNLSSC-----LSNLNDTDVIIKNKLPFDLLSIELRDGI 433 Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440 +L KITG E+LLD IFSKFCIGK Sbjct: 434 QNLSKITGQELTEELLDNIFSKFCIGK 460 >gi|90194102|gb|ABD92612.1| ThdF [Actinobacillus capsulatus] Length = 436 Score = 234 bits (596), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 155/438 (35%), Positives = 243/438 (55%), Gaps = 29/438 (6%) Query: 18 SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77 + I+R+SGP +V + + K+ PR A+ F DG +LD+G+ + F +P SFTG Sbjct: 6 GGVGILRISGPLAQEVAKEVLGKELK-PRLANYLPFKDQDGTVLDQGIALFFKAPNSFTG 64 Query: 78 EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137 ED E HGG +++ +L+ + + +R+A GEFS +AF N K+DL +AE++ADLI + Sbjct: 65 EDVLELQGHGGQVILDILLKRILAVKGVRIARAGEFSEQAFLNDKLDLAQAEAIADLIDA 124 Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LN 194 +E R +++ + GE S+ Q +D + ++R+++EA +DF +EE + + ++ LN Sbjct: 125 TSEQAARSALKSLQGEFSNKINQLVDSVIYLRTYVEAAIDFPDEE-IDFLADGKIEGHLN 183 Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254 DI+ N + QG I+R G K+VI G NAGKSSL NALA ++ AIVT+I GTT Sbjct: 184 DIIRQLNGVRKEAKQGA---ILREGMKVVIAGRPNAGKSSLLNALAGREAAIVTNIAGTT 240 Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314 RDVL + ++G + I DTAG+RE D VEK GI+R + E+E AD +LL+ + + Sbjct: 241 RDVLREHIHIDGMPLHIIDTAGLREASDEVEKIGIQRAWDEIEQADHVLLMIDSTEQTAE 300 Query: 315 SF-----------PKNIDFIFIGTKSDLY--STYTEEYDHL----ISSFTGEGLEELINK 357 +F P+NI I K DL S +E D +S+ T G++ L Sbjct: 301 AFKTEWADFLAKLPQNIPVTVIRNKVDLSGESEGLQELDGFTLIRLSAQTKVGVDLLREH 360 Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLASVS 415 +K+ + + + +RHL L +LE L + G +++AE LR+ + Sbjct: 361 LKNSMGYQ-SSTEGGFLARRRHLQALETAAEHLERGHIQLTQFFAG-ELLAEELRMVQNA 418 Query: 416 LGKITGCVDVEQLLDIIF 433 L +ITG + LL IF Sbjct: 419 LSEITGQFTSDDLLGNIF 436 >gi|15806039|ref|NP_294740.1| tRNA modification GTPase TrmE [Deinococcus radiodurans R1] gi|14195298|sp|Q9RVL1|MNME_DEIRA RecName: Full=tRNA modification GTPase mnmE gi|6458744|gb|AAF10590.1|AE001953_4 thiophene and furan oxidation protein [Deinococcus radiodurans R1] Length = 443 Score = 234 bits (596), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 146/448 (32%), Positives = 233/448 (52%), Gaps = 28/448 (6%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG---LDGRIL 61 ++TI AV+T + + I+R+SGP ++ + + + K+ R+ FG D +L Sbjct: 12 QDTIAAVATAPGSAGVGIVRVSGPRALEIADGLFRGKRRPSATPGGRFLFGELHADEELL 71 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121 D+GL +VF P S+TGED AE HG AV++ +L + RLA PGEF+ RA+ G Sbjct: 72 DEGLCLVFRGPRSYTGEDVAEVQTHGSPAVLSRVLARTLDL-GARLARPGEFTLRAYLAG 130 Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181 ++DL +AE++ L+ + TE RR S G+SG LS LT + I+A LD+ EE Sbjct: 131 RLDLTQAEAVLGLVEASTETARRQSALGLSGALSERVAGVARALTRTLAAIQALLDYPEE 190 Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 ++ +L ++ + ++ G I G ++ ++G NAGKSSL NAL Sbjct: 191 ----GVPDEDRAAPLLGAQSALEELLASAHAGRISTRGARLALIGRPNAGKSSLLNALLG 246 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 + +IVT +PGTTRD L L+L G V + DTAG+RET+D++E G+++ NADL Sbjct: 247 YERSIVTPLPGTTRDYLEAGLELAGVPVTLVDTAGLRETEDLIEAAGVRQAVALAGNADL 306 Query: 302 ILLLKEINSKKE---ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKI 358 +L+L++ + +E P + + TK+DL + +T+ +S+ TG GL L I Sbjct: 307 VLVLEDGSQPREPLPTELPPTATVLRLRTKADLPAAWTDPAALDVSAVTGAGLPALREAI 366 Query: 359 KSILSNKFKKLPFSIPSH------KRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLA 412 + L + + + +R L H+ Q R L D+ L A Sbjct: 367 GAALLGDATRGEAWLTTERQTDTVRRALTHV-QAARTLPD----------DLAGYELEEA 415 Query: 413 SVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +L ++TG E ++D +F FC+GK Sbjct: 416 LHALAELTGQDVQEDVVDAVFRNFCVGK 443 >gi|4006|emb|CAA49238.1| GTPase [Saccharomyces cerevisiae] Length = 526 Score = 234 bits (596), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 179/497 (36%), Positives = 261/497 (52%), Gaps = 65/497 (13%) Query: 4 EKETIFAVSTGA-LPSAISIIRLSGPSC-FQVCEFICKKKKPFPRKASLRYFFGLDGR-- 59 ++ TI+A+ST A SAI IIR+SG + + P RKA LR + Sbjct: 35 QQPTIYALSTPANQTSAIRIIRISGTHAKYIYNRLVDSSTVPPIRKAILRNIYSPSSCSV 94 Query: 60 ----------ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKM------P 103 +LD LL+ F +P SFTGED E HVHGG AVVN IL+ + + Sbjct: 95 KPHDQKESKILLDTSLLLYFQAPYSFTGEDVLELHVHGGKAVVNSILKAIGSLHDRSSGK 154 Query: 104 NLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWID 163 ++R A PG+FSRRAF+NGK DL + E + DLI SETE QRR ++ +G+ L+ W + Sbjct: 155 DIRFALPGDFSRRAFQNGKFDLTQLEGIKDLIDSETESQRRSALSSFNGDNKILFENWRE 214 Query: 164 KLTHIRSFIEADLDFSEE--EDVQNFSS--KEVLNDILFLKNDISSHISQGKLGEIIRNG 219 + + + A +DF+++ +++QN V +I+ L++ I + + + + I++NG Sbjct: 215 TIIENMAQLTAIIDFADDNSQEIQNTDEIFHNVEKNIICLRDQIVTFMQKVEKSTILQNG 274 Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 K+V+LG N GKSSL N+L D++IV+DIPGTTRD + +++ GY V I DTAGIRE Sbjct: 275 IKLVLLGAPNVGKSSLVNSLTNDDISIVSDIPGTTRDSIDAMINVNGYKVIICDTAGIRE 334 Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNI------------DFIFIG 326 + D +E GI R + +DL L + + ++ P++I I + Sbjct: 335 KSSDKIEMLGIDRAKKKSVQSDLCLFIVDPTDLSKL-LPEDILAHLSSKTFGNKRIIIVV 393 Query: 327 TKSDLYST--YTEEYDHL------------ISSFTGEGLEELINKIKSILSNKFKKLPFS 372 KSDL S T+ + L +S T EG+E LI S L++ F+ L S Sbjct: 394 NKSDLVSDDEMTKVLNKLQTRLGSKYPILSVSCKTKEGIESLI----STLTSNFESLSQS 449 Query: 373 ------IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDII--AENLRLASVSLGKITG-CV 423 + KR L V Y KD DI+ ENLR AS + KITG + Sbjct: 450 SADASPVIVSKRVSEILKNDVLYGLEEFFKSKDFHNDIVLATENLRYASDGIAKITGQAI 509 Query: 424 DVEQLLDIIFSKFCIGK 440 +E++LD +FSKFCIGK Sbjct: 510 GIEEILDSVFSKFCIGK 526 >gi|110638429|ref|YP_678638.1| tRNA modification GTPase TrmE [Cytophaga hutchinsonii ATCC 33406] gi|123354534|sp|Q11TG8|MNME_CYTH3 RecName: Full=tRNA modification GTPase mnmE gi|110281110|gb|ABG59296.1| tRNA modification GTPase trmE [Cytophaga hutchinsonii ATCC 33406] Length = 460 Score = 234 bits (596), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 159/452 (35%), Positives = 250/452 (55%), Gaps = 23/452 (5%) Query: 8 IFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGLDGRILDKGL 65 I A+++ AI +IRLSGP F + F K P +GRILD+ + Sbjct: 13 IVALASPQGIGAIGVIRLSGPQAFDITSSVFPSKNIAAVPTHTVHVGNIEDEGRILDEVV 72 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + VF P+SFT ED E HG +V +L+ L + R A PGEF+ RAF NG+ DL Sbjct: 73 VTVFKGPKSFTKEDVVEISCHGSTFIVKELLQLLLR-KGARHAKPGEFTMRAFLNGRFDL 131 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLISS++ +++++ M G S + ++L H S +E +LDFSEE DV+ Sbjct: 132 AQAEAVADLISSDSHASHQVALQQMRGGFSDEIRKLREQLIHFASMVELELDFSEE-DVE 190 Query: 186 NFSSKEVLNDILF-LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 F+ + L ++ +K I I LG +I+NG VI+G NAGKS+L N L ++ Sbjct: 191 -FADRTQLRKLIHEIKRVIDRLIHSFSLGNVIKNGVPTVIIGKPNAGKSTLLNTLLNEEK 249 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIV++I GTTRD + +L++EG + DTAG+RE D +E G+KRT ++ A L++ Sbjct: 250 AIVSEIAGTTRDFIEDELNVEGITFRFIDTAGLREATDAIEAMGVKRTREKMTQASLVIY 309 Query: 305 LKEINSKKEISFPKNID--------FIFIGTK----SDLYSTYTEEYDHL--ISSFTGEG 350 L ++ S E ++++ F+ +G K D T D + IS+ G Sbjct: 310 LFDVKSTSERELIRDLEELKALKAPFLVVGNKIDKREDAIITTFRNIDGIIYISAKQNIG 369 Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDIIAEN 408 +EEL + I+ + K ++ ++ RH L +T + L+ + ++ + G D++A++ Sbjct: 370 IEELKQNLLEIIQYESFKQNDTLVTNMRHYESLRETRKALDEVLTGMDSQVPG-DLLAQD 428 Query: 409 LRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +R + LG+ITG + + LLD IFSKFCIGK Sbjct: 429 IRQSLFHLGEITGDISTDDLLDNIFSKFCIGK 460 >gi|308490486|ref|XP_003107435.1| hypothetical protein CRE_14041 [Caenorhabditis remanei] gi|308251803|gb|EFO95755.1| hypothetical protein CRE_14041 [Caenorhabditis remanei] Length = 443 Score = 234 bits (596), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 157/454 (34%), Positives = 250/454 (55%), Gaps = 34/454 (7%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66 TIFA+S+G LPSAI++ R+SGP V + ++K P+ + + RI+D+ + Sbjct: 4 TIFALSSGTLPSAIAVFRVSGPQSLPVLRQLSRRKIWTPKMMEYTKLYDSERRIIDEAMA 63 Query: 67 IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126 + FP P++FTGED+AEF +HG AV L+++ N+R A GEF+RRAF NGK+ + Sbjct: 64 VYFPGPKTFTGEDTAEFFLHGSQAVATKFATCLSEIENVREAKRGEFTRRAFHNGKMSIS 123 Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186 L LI S TE +RR + M G + ++ + KL I S + +DF E ++Q Sbjct: 124 GVRGLDRLIRSRTEKERRAAFGKMRGGVRAV--EIRKKLVQILSKLFVIIDFGEHVELQL 181 Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246 ++ +++IL +I+ I+ E + G IV+ G N+GKSS+ N LA DVAI Sbjct: 182 EEAQRDVSEIL---QEINRMIAAWNGAERAQRGLNIVLYGRPNSGKSSILNQLAHDDVAI 238 Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEVENADLILLL 305 V+ IPGTTRD L L + G L +++DTAGIR TDD++E EG++R +E AD+I+++ Sbjct: 239 VSSIPGTTRDSLVTSLQINGVLCRLTDTAGIRRLTDDVIEAEGMRRAQQRLECADIIIVV 298 Query: 306 KE-----------INSKKEISFPKNIDFIFIGTKSDLYSTYTE------EYDHLISSF-- 346 + +N +E+ ++ I + K+DL Y E + H++S++ Sbjct: 299 VDPESTSDDVAAILNDVEELKSGES-KVIIVKNKTDLKLPYPEVLIDSMKKCHVVSTYAT 357 Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIA 406 + G EEL NK+ S++ + F + + L S + S+ +D I+ Sbjct: 358 SSNGCEELRNKLGSLVEELCPEANFLLDAE--LLRKCSDEL----TCSMLCQDAA--IMC 409 Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++ A S+G++T + E +LD IFSKFCIGK Sbjct: 410 SHIETALESIGELTEGIVNENVLDGIFSKFCIGK 443 >gi|168218051|ref|ZP_02643676.1| tRNA modification GTPase TrmE [Clostridium perfringens NCTC 8239] gi|182379938|gb|EDT77417.1| tRNA modification GTPase TrmE [Clostridium perfringens NCTC 8239] Length = 458 Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 161/463 (34%), Positives = 266/463 (57%), Gaps = 33/463 (7%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK--------KKKPFPRKASLRYFFG 55 E +TI A++T I+IIR+SG ++ I + KP+ ++RY Sbjct: 3 EFDTIAAIATALGEGGIAIIRVSGNKALEIVNKIFRGINGKDLLDIKPY----TMRYGHM 58 Query: 56 LD--GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEF 113 +D I+D+ ++ P SFT ED+ E + HGGI N +L+ + K RLA PGEF Sbjct: 59 IDENNEIIDEVIVSFMKGPRSFTAEDTVEINCHGGIVATNKVLQNVIK-AGARLAEPGEF 117 Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173 ++RAF NG+IDL +AE++ D+I+++TE+ + +M G LS+ + I + IE Sbjct: 118 TKRAFLNGRIDLSQAEAVMDIITAKTELSMKSAMTQSQGRLSTEINNLRKEALDILALIE 177 Query: 174 ADLDFSEE-EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232 D+DF+E+ E+ +V D++ L+ +++ I G++IR+G +VI+G N GK Sbjct: 178 YDVDFTEDDEEPDETIPVKVKEDVITLRGKVNNLIDTADEGKLIRDGLSMVIVGKPNVGK 237 Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292 SSL NAL + AIVTDI GTTRDV+ ++L+G V++ DTAGIRET+D+VEK G++++ Sbjct: 238 SSLLNALLNEKRAIVTDIAGTTRDVIEEYINLDGIPVRLVDTAGIRETEDVVEKIGVEKS 297 Query: 293 FLEVENADLILLL----KEIN--SKKEISFPKNIDFIFIGTKSDLYSTYTEE-YDHL--- 342 ++ ADL++L+ +E++ K+ I + K+ +I + K DL + E D+L Sbjct: 298 KEKINEADLVILMLDTSRELDEEDKEIIDYIKDRKYIVLLNKVDLDRKLSSEIVDNLENK 357 Query: 343 --ISSFTGEGLEELINKIKSILSN---KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE 397 +S+ TG G+++L +KIK + N + + + HK LY S+ + + LN Sbjct: 358 IELSAKTGFGIDDLKSKIKDLFFNGSIDAESVMVTNTRHKEALYRASENLDG-ALNGLNN 416 Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + LD+++ + A +LG+ITG E L++ IF++FC GK Sbjct: 417 NEF-LDLVSIYVTSALRALGEITGAELEEDLVNKIFAEFCCGK 458 >gi|298490946|ref|YP_003721123.1| tRNA modification GTPase TrmE ['Nostoc azollae' 0708] gi|298232864|gb|ADI64000.1| tRNA modification GTPase TrmE ['Nostoc azollae' 0708] Length = 464 Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 155/462 (33%), Positives = 247/462 (53%), Gaps = 35/462 (7%) Query: 7 TIFAVSTGALPS--AISIIRLSGPSCFQVCEFICKKKKPFPRKA---SLRYFFGL----- 56 TI A++T +P ++ I+R+SG + + + PR+ S R +G Sbjct: 10 TIAAIATAVVPQQGSVGIVRVSGDKAIAIAQTLFSA----PRRQVWESHRILYGYIRQPQ 65 Query: 57 DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 +++D+ LL++ +P SFT ED EFH HGGI V +L+ L RLA PGEF+ R Sbjct: 66 TRQLVDEALLLIMKAPRSFTREDVVEFHCHGGIIAVQQVLQ-LCLENGARLAQPGEFTLR 124 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NG++DL +AES+ADL+ +++ + ++ G+ G+L+ Q + I + IEA + Sbjct: 125 AFLNGRLDLTQAESVADLVGAKSPQAAQTALAGLQGKLAHPIRQLRAQCLDILAEIEARI 184 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 DF EED+ + ++++I + +I+ ++ GE++R G K+ I+G N GKSSL Sbjct: 185 DF--EEDLPPLDEQRIISEIDQVTLEITKFLATKDQGELLRTGLKVAIVGRPNVGKSSLL 242 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 NA ++ D AIVTD+PGTTRDV+ L + G V++ DTAGIRET D VEK G++R+ Sbjct: 243 NAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETADQVEKIGVERSRRAS 302 Query: 297 ENADLIL---------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH 341 ADL+L + +++ + I ID I I K L S Sbjct: 303 SAADLVLFTIDASAGWTQADQEIYEQVKHRPVILVINKIDLISIAEKQTLQSKIQSPKSK 362 Query: 342 LISSFT-GEGLEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EK 398 ++++ +G++ L + I+ + K + + ++R L++ LE + + Sbjct: 363 IVTAAAQNQGIDSLETAVLEIVKAGKVQAADIDLAINQRQAAALTKAKISLEQVQVTIIE 422 Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LD +LR A +LG+ITG E +LD IFSKFCIGK Sbjct: 423 QLPLDFWTIDLRGAIYALGEITGEEVTESVLDRIFSKFCIGK 464 >gi|262118592|pdb|3GEH|A Chain A, Crystal Structure Of Mnme From Nostoc In Complex With Gdp, Folinic Acid And Zn Length = 462 Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 160/460 (34%), Positives = 244/460 (53%), Gaps = 32/460 (6%) Query: 7 TIFAVSTGALPS--AISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL-----D 57 TI A++T +P ++ I+R+SG + + F K+ + S R +G Sbjct: 9 TIAAIATAIVPQQGSVGIVRVSGSQAIAIAQTLFDAPGKQVWE---SHRILYGYIRHPQT 65 Query: 58 GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 +I+D+ LL++ +P S+T ED EFH HGGI V +L+ L RLA PGEF+ RA Sbjct: 66 RQIVDEALLLLMKAPRSYTREDVVEFHCHGGIIAVQQVLQ-LCLESGARLAQPGEFTLRA 124 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NG++DL +AES+ADL+ + + + ++ G+ G+L+ Q I + IEA +D Sbjct: 125 FLNGRLDLTQAESIADLVGARSPQAAQTALAGLQGKLAHPIRQLRANCLDILAEIEARID 184 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 F EED+ + +++DI + +IS ++ GE++R G K+ I+G N GKSSL N Sbjct: 185 F--EEDLPPLDDEAIISDIENIAAEISQLLATKDKGELLRTGLKVAIVGRPNVGKSSLLN 242 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 A ++ D AIVTD+PGTTRDV+ L + G V++ DTAGIRET D VEK G++R+ Sbjct: 243 AWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAAN 302 Query: 298 NADLILLLKE-----INSKKEI-SFPKNIDFIFIGTKSDLYST-------YTEEYDHLIS 344 ADL+LL + +EI K+ I + K DL Y E ++ Sbjct: 303 TADLVLLTIDAATGWTTGDQEIYEQVKHRPLILVMNKIDLVEKQLITSLEYPENITQIVH 362 Query: 345 SFTG--EGLEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDC 400 + +G++ L I I+ + K + + ++R L+Q LE + Sbjct: 363 TAAAQKQGIDSLETAILEIVQTGKVQAADMDLAINQRQAAALTQAKMSLEQVQATITQQL 422 Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LD +LR A +LG+ITG E +LD IFS+FCIGK Sbjct: 423 PLDFWTIDLRGAIQALGEITGEEVTESVLDRIFSRFCIGK 462 >gi|148381580|ref|YP_001256121.1| tRNA modification GTPase TrmE [Clostridium botulinum A str. ATCC 3502] gi|153931640|ref|YP_001385957.1| tRNA modification GTPase TrmE [Clostridium botulinum A str. ATCC 19397] gi|153937169|ref|YP_001389364.1| tRNA modification GTPase TrmE [Clostridium botulinum A str. Hall] gi|168181110|ref|ZP_02615774.1| tRNA modification GTPase TrmE [Clostridium botulinum NCTC 2916] gi|170756593|ref|YP_001783278.1| tRNA modification GTPase TrmE [Clostridium botulinum B1 str. Okra] gi|226951095|ref|YP_002806186.1| tRNA modification GTPase TrmE [Clostridium botulinum A2 str. Kyoto] gi|166200473|sp|A7FPM0|MNME_CLOB1 RecName: Full=tRNA modification GTPase mnmE gi|166200474|sp|A5I816|MNME_CLOBH RecName: Full=tRNA modification GTPase mnmE gi|205829143|sp|B1IHR9|MNME_CLOBK RecName: Full=tRNA modification GTPase mnmE gi|148291064|emb|CAL85201.1| probable tRNA modification GTPase [Clostridium botulinum A str. ATCC 3502] gi|152927684|gb|ABS33184.1| tRNA modification GTPase TrmE [Clostridium botulinum A str. ATCC 19397] gi|152933083|gb|ABS38582.1| tRNA modification GTPase TrmE [Clostridium botulinum A str. Hall] gi|169121805|gb|ACA45641.1| tRNA modification GTPase TrmE [Clostridium botulinum B1 str. Okra] gi|182668135|gb|EDT80114.1| tRNA modification GTPase TrmE [Clostridium botulinum NCTC 2916] gi|226841162|gb|ACO83828.1| tRNA modification GTPase TrmE [Clostridium botulinum A2 str. Kyoto] gi|322807967|emb|CBZ05542.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Clostridium botulinum H04402 065] Length = 461 Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 164/469 (34%), Positives = 264/469 (56%), Gaps = 42/469 (8%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--------KPFPRKASLRYFFG 55 E +TI AV+T ISIIR+SG + I K K KP+ S+RY F Sbjct: 3 EFDTIAAVATPVGEGGISIIRISGDKSLDIVSSIFKGKNDRTLDDIKPY----SMRYGFI 58 Query: 56 LDGR---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGE 112 ++ ++D+ L+ P SFT ED+ E + HGG+ IL+EL K RLA PGE Sbjct: 59 IEKESKEMIDEVLVSYMKGPRSFTAEDTLEINCHGGVIPTKKILKELIK-SGARLAEPGE 117 Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172 F++RAF NG+IDL +AE++ D+I S+T++ + +++ G LS +++ I + I Sbjct: 118 FTKRAFLNGRIDLSQAEAVIDIIRSKTDLSMKSALKQAEGTLSKEINSIRNRMIKIIAHI 177 Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232 EA +D+ E+ D++ + +++ D+ + N I + IS + G+I+R G VI+G N GK Sbjct: 178 EATVDYPED-DLEEITGQKIKVDLKEIINKIDNLISASEEGKILREGLNTVIVGKPNVGK 236 Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292 SSL NAL ++ AIVT+IPGTTRDV+ ++++G +KI DTAGIRET+D+VEK G++++ Sbjct: 237 SSLLNALINENKAIVTEIPGTTRDVIEEYINIDGIPIKIVDTAGIRETEDVVEKIGVEKS 296 Query: 293 FLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF 346 +++ ADL++ + +++ K + + F KN +I + K DL EE +H I Sbjct: 297 KEKIDEADLVIFMLDLSRKIDEEDIEIMDFIKNKKYIVLLNKLDLNKDLNEE-NHFIKEL 355 Query: 347 -----------TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT----VRYLE 391 GL EL IK++ + K I ++ RH L ++ ++ +E Sbjct: 356 DSKYIIKTSVKNNSGLNELKECIKNLFFSGEIKSDELIVTNARHQEALIRSRESCIQAIE 415 Query: 392 MASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 S + +D+ + ++R A LG+ITG E ++D IFS+FC+GK Sbjct: 416 TLS---DEISIDLASIDIRNAWKYLGEITGDTLDENIIDKIFSEFCLGK 461 >gi|154276802|ref|XP_001539246.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1] gi|150414319|gb|EDN09684.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1] Length = 1231 Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 174/545 (31%), Positives = 269/545 (49%), Gaps = 114/545 (20%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLD-----GRI 60 TI+A+ST +AI+I+R+SGP+C Q+ + +C K+ P PR A+LR F I Sbjct: 679 TIYALSTAPGRAAIAIVRVSGPACVQIYDALCPKRPLPNPRVAALRTLFDPSVPPSVNSI 738 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAK-----------MPNLRLAN 109 LD+ +++ FP+P + TGED E H+HGG AVV +L + + MP++R A Sbjct: 739 LDRAVVLHFPAPNTVTGEDVLELHIHGGPAVVKAVLNAIPRCAGAFSNEKIAMPSIRYAE 798 Query: 110 PGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR 169 PGEF+RRAF N ++ L + E+L + +S+ETE QRRL++ G SG L+ Y +W +L + R Sbjct: 799 PGEFTRRAFLNDRLSLPQIEALGNTLSAETEHQRRLAVRGTSGSLAFRYERWRQQLLYAR 858 Query: 170 SFIEADLDFSE----EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVIL 225 +EA +DFSE +E ++ F S + ++ L I+ HI GE++R+G ++ +L Sbjct: 859 GEMEALIDFSEDQHFDESIEEFVSS-ITGEVRNLVRQINLHIENASKGELLRSGIRVALL 917 Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD---- 281 G NAGKSSL N + ++ AIV+ GTTRD++ + +D+ GY K D AG+R Sbjct: 918 GAPNAGKSSLLNRIVGREAAIVSSEEGTTRDIVDVGVDIGGYFCKFGDMAGLRSGHIARS 977 Query: 282 -----DIVEKEGIKRTFLEVENADLILL---LKEINSKKEISF---PKNID--------- 321 VE+EGI+R +D++++ L+E ++ + P+ +D Sbjct: 978 GSMPIGAVEQEGIRRAKARALESDVVIVVLSLEESDNGTGVKLVLEPEVVDAVRSCIALE 1037 Query: 322 --FIFIGTKSDLYS--TYTEEYDH-----------------------LISSFTGEG---- 350 I K D YS TYT LIS E Sbjct: 1038 KHMIVAVNKFDKYSPTTYTARTQQKFVDSLTEEISSVEPRLTQDQIFLISCREAENEVSQ 1097 Query: 351 ----------LEELINKIKSI-----LSN---KFKKLPF--SIPSHKRHLYHLSQTVRYL 390 L ELI K + L N +F KL + S+ R +L + V++L Sbjct: 1098 EADPGNIQKFLGELIRTFKRMSTPSELDNGNEQFDKLYWEDSLGVTHRQSSNLQKCVQHL 1157 Query: 391 ------------EMASLNEKDCGLDII--AENLRLASVSLGKITG---CVDVEQLLDIIF 433 A+ + + DI+ AE+LR A+ L KITG DVE +L ++F Sbjct: 1158 NDFLSQTCQTPDNAANAEQIEVNFDIVTAAEHLRFAADCLAKITGRGESGDVEDVLGVVF 1217 Query: 434 SKFCI 438 K+ + Sbjct: 1218 EKYSL 1222 >gi|260434789|ref|ZP_05788759.1| tRNA modification GTPase TrmE [Synechococcus sp. WH 8109] gi|260412663|gb|EEX05959.1| tRNA modification GTPase TrmE [Synechococcus sp. WH 8109] Length = 450 Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 147/450 (32%), Positives = 247/450 (54%), Gaps = 45/450 (10%) Query: 18 SAISIIRLSGPSCFQVCEFI--CKKKKPFPRKASLRYFFGL----DGRILDKGLLIVFPS 71 I++IRLSGP+ + C ++ + S R +G +GR LD+ LL++ Sbjct: 19 GGIAVIRLSGPAAEATGRSVVHCPGRQEW---GSHRVVYGHVMDGEGRRLDEVLLLLMRG 75 Query: 72 PESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESL 131 P SFTGED E H HGG+ V +LE++ + P +R A PGEFS+RA NG++DL AE++ Sbjct: 76 PRSFTGEDVVEIHCHGGVIAVQRVLEQVLRQPGVRRALPGEFSQRAVLNGRLDLTRAEAV 135 Query: 132 ADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNF 187 ++L+++ + L++ G+ G ++++L + +D+LT + EA +DF EED+ Sbjct: 136 SELVAARSRRAAELAIAGLDGGIQAQITALRERLLDQLTEL----EARVDF--EEDLPPL 189 Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247 + + + ++ ++ + G+ G+ +R G ++ ++G N GKSSL N L++++ AIV Sbjct: 190 DGEALQQQLQAVRLELQQLVRDGERGDALRKGLRVALVGRPNVGKSSLLNRLSRRERAIV 249 Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307 TD+PGTTRD+L ++ LEG + + DTAGIR TDD VE+ GI R+ + AD++LL+ + Sbjct: 250 TDLPGTTRDLLESEIALEGVPITLLDTAGIRSTDDAVERLGIARSEEALATADVVLLVLD 309 Query: 308 INSKKE-------ISFPKNIDFIFIGTKSDLYS-TYTEEYDHLISSFTGEGLEELINKIK 359 ++ P+ I I + K+DL + T+ + D +S+ G G +L+ Sbjct: 310 GHAGWTSEDAALLARIPEQIPRILVANKADLPAGTFPQPVDVQLSALEGTGEADLVQ--- 366 Query: 360 SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAE---------NLR 410 +L + + L L+Q R L + C ++ A+ +LR Sbjct: 367 -VLLER-----CGAAGTEGVLLALNQRQRDLAAQAAEALACSQEVAAQQLPWDFWTIDLR 420 Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A +LG+ITG E +LD +FS+FCIGK Sbjct: 421 EAIRALGEITGEEITEAVLDRVFSRFCIGK 450 >gi|298375973|ref|ZP_06985929.1| tRNA modification GTPase TrmE [Bacteroides sp. 3_1_19] gi|298267010|gb|EFI08667.1| tRNA modification GTPase TrmE [Bacteroides sp. 3_1_19] Length = 461 Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 157/464 (33%), Positives = 252/464 (54%), Gaps = 35/464 (7%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP-----FPRKASLRY--FFGLDGR 59 TI A+ST I++IR+SGP F++C+ I + KK + +L Y G + Sbjct: 3 TICAISTAPGVGGIAVIRVSGPDTFKICDRIFRPKKAGKSLSTQKAYTLTYGSIVGNNDE 62 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 +D+ + VF +P SFTGED+ E HG + IL+ L R+A PGE+++RAF Sbjct: 63 TIDEVIAAVFRAPHSFTGEDTVEITCHGSTYIQQQILQSLIS-SGCRIAQPGEYTQRAFM 121 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NGK+DL +AE++ADLI+S + Q RL++ M G S + ++L H S +E +LDFS Sbjct: 122 NGKMDLSQAEAVADLIASTSAGQHRLALSQMRGGFSRELAELRNQLLHFTSLMELELDFS 181 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQG-KLGEIIRNGYKIVILGHSNAGKSSLFNA 238 + E+++ F+ + L + + S ++Q +G I+NG + I+G +NAGKS+L NA Sbjct: 182 DHEELE-FADRSELRTLADHIEQVISKLAQSFSVGNAIKNGIPVAIIGETNAGKSTLLNA 240 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L +D AIV++I GTTRDV+ +++ G L + DTAGIRET D +E GI+R+F ++ Sbjct: 241 LLNEDKAIVSNIHGTTRDVIEDTININGQLFRFIDTAGIRETSDTIEALGIERSFKALDQ 300 Query: 299 ADLILLLKEINSK--------KEISFPK--NIDFIFIGTKSDL--------YSTYTEEYD 340 A +++L+ ++ +EI+ P+ N I K D+ +S TE + Sbjct: 301 AQIVILMYDLTRDLKDFETFYQEIA-PRLTNKSVILAMNKCDVLPASSLPTFSFPTEGWH 359 Query: 341 HLISSFTGE----GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396 + S G+ L++L+ ++ SI + + + H L H + + ++ LN Sbjct: 360 QIAISAKGKLHIAELQQLLTEVSSIPTLHQSDIIVTNARHFEALTHALEAIHRVQ-EGLN 418 Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G D I+++LR L I G V +Q+L IF FCIGK Sbjct: 419 SSLSG-DFISQDLRECIFHLSDIVGEVTTDQVLGNIFQHFCIGK 461 >gi|229542320|ref|ZP_04431380.1| tRNA modification GTPase TrmE [Bacillus coagulans 36D1] gi|229326740|gb|EEN92415.1| tRNA modification GTPase TrmE [Bacillus coagulans 36D1] Length = 461 Score = 233 bits (595), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 159/465 (34%), Positives = 263/465 (56%), Gaps = 33/465 (7%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFI-----CKKKKPFPRKASLRYFFGLD- 57 E +TI A+ST AISI+RLSG + + + KK P ++ Y +D Sbjct: 2 EMDTIAAISTPMGEGAISIVRLSGENAIAIANRLFAGVGGKKLVDVPSH-TIHYGKIVDP 60 Query: 58 --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 G +++ ++ V +P++FT ED E + HGG+ VN +L+ + K RLA PGEF++ Sbjct: 61 DTGETVEEAMVSVMKAPKTFTREDVVEINCHGGLVAVNRVLQLVLK-NGARLAEPGEFTK 119 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG+IDL +AE++ DLI ++T+ +++ M G LS L + ++ + + IE + Sbjct: 120 RAFLNGRIDLSQAEAVMDLIRAKTDKAMNVAIGQMEGRLSKLVKKLRQEILEVVAHIEVN 179 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +D+ E +DV+ + + + ++KN+I + G+I+R G I+G N GKSSL Sbjct: 180 IDYPEYDDVEEMTHRMLKEKAQYIKNEIEKLLRTAHQGKILREGLSTAIIGRPNVGKSSL 239 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N+L +++ AIVTDIPGTTRDV+ +++ G +++ DTAGIRET+DIVE+ G++R+ Sbjct: 240 LNSLVQENKAIVTDIPGTTRDVIEEYVNVRGVPLRLIDTAGIRETEDIVERIGVERSRKA 299 Query: 296 VENADLILLLKEINSKKEISFPKN---------IDFIFIGTKSDL-YSTYTEEYDHL--- 342 ++ ADLILL+ INS + +S P++ +D I I K DL + E L Sbjct: 300 LKEADLILLV--INSSEPLS-PEDEALFEAVEGMDVIVILNKWDLPHQVEMESVRELAQG 356 Query: 343 -----ISSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLE-MASL 395 S T EG+E+L + I ++ + + + S+ RH+ L+Q + ++ + + Sbjct: 357 AKILTTSLVTEEGMEKLEDAIAAMYFEGQMETGDLTYVSNSRHIALLNQALEAIQDVQNG 416 Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + + +DII +L LG+I G E LL+ +FS+FC+GK Sbjct: 417 IQSNTPIDIIQIDLTRTWDLLGEIIGDTVQESLLNQLFSQFCLGK 461 >gi|90194100|gb|ABD92611.1| ThdF [Actinobacillus genomosp. 1] Length = 436 Score = 233 bits (595), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 154/438 (35%), Positives = 241/438 (55%), Gaps = 29/438 (6%) Query: 18 SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77 + I+R+SGP +V + + K+ PR A+ F DG +LD+G+ + F +P SFTG Sbjct: 6 GGVGILRISGPLAQEVAKEVLGKELK-PRLANYLPFKDQDGTVLDQGIALFFKAPNSFTG 64 Query: 78 EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137 ED E HGG +++ +L+ + + +R+A GEFS +AF N K+DL +AE++ADLI + Sbjct: 65 EDVLELQGHGGQVILDILLKRILAVKGVRIARAGEFSEQAFLNDKLDLAQAEAIADLIDA 124 Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LN 194 +E R +++ + GE S+ Q +D + ++R+++EA +DF +EE + + ++ LN Sbjct: 125 TSEQAARSALKSLQGEFSNKINQLVDSVIYLRTYVEAAIDFPDEE-IDFLADGKIEGHLN 183 Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254 DI+ N + QG I+R G K+VI G NAGKSSL NALA +D AIVT+I GTT Sbjct: 184 DIIRQLNGVRKEAKQGA---ILREGMKVVIAGRPNAGKSSLLNALAGRDAAIVTNIAGTT 240 Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314 RDVL + ++G + I DTAG+RE D VE+ GI+R + E+E AD +LL+ + + Sbjct: 241 RDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIQRAWDEIEQADHVLLMIDSTEQTAE 300 Query: 315 SF-----------PKNIDFIFIGTKSDLYSTYT--EEYDHL----ISSFTGEGLEELINK 357 +F P+NI I K DL +E D +S+ T G++ L Sbjct: 301 AFKTEWADFLAKLPQNIPVTVIRNKVDLSGEAEGLQELDGFTLIRLSAQTKVGVDLLREH 360 Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLASVS 415 +K + + + +RHL L +LE L + G +++AE LR+ + Sbjct: 361 LKKSMGYQ-SSTEGGFLARRRHLQALETAAEHLERGHIQLTQFFAG-ELLAEELRMVQNA 418 Query: 416 LGKITGCVDVEQLLDIIF 433 L +ITG + LL IF Sbjct: 419 LSEITGQFTSDDLLGNIF 436 >gi|294627441|ref|ZP_06706025.1| tRNA modification GTPase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292598262|gb|EFF42415.1| tRNA modification GTPase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 446 Score = 233 bits (595), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 150/449 (33%), Positives = 241/449 (53%), Gaps = 12/449 (2%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+ TI A+++ + I+RLSGP Q+ + + PR A F G + Sbjct: 1 MSSSTSTIVAIASATGIGGVGIVRLSGPQSVQIAAHLGIARMR-PRHAHYARFRDGQGAV 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D G+ + F +P SFTGED E HG ++ ++ + R A GEFS RAF N Sbjct: 60 IDDGIALWFNAPHSFTGEDVVELQGHGSPVLLRQLVARCIAL-GARQARAGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GK+DL +AE++ADLI++ R + + G S + LT +R +EA +DF++ Sbjct: 119 GKLDLAQAEAIADLIAAGDLRAARAARRALDGVFSQRVDALAETLTRLRIHVEAAIDFAD 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E + K+V + + +N ++ + + G +R+G V++G NAGKSSL NALA Sbjct: 179 EP-LDTLGGKQVRDGLGQARNVLAQLLRDAERGRKLRDGLHAVLIGPPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 D AIVTD+ GTTRD L + L+G+ + + DTAG+R+ D +E+EG++R +E+E AD Sbjct: 238 GSDRAIVTDVAGTTRDTLHEAIQLDGFELTLVDTAGLRDGGDAIEREGMRRARVELERAD 297 Query: 301 LILLLKEINSKKEI--SFPKNIDFI----FIGTKSDLYSTYT--EEYDHLISSFTGEGLE 352 L L++ + + + ID + +I K DL + +S+ TG+GLE Sbjct: 298 LALVVLDARDPQAARDAIGDAIDAVPRQLWIHNKCDLLGNAASLDANAIAVSAVTGQGLE 357 Query: 353 ELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411 +L +++++ L + + + RH+ L + ++ + A L L++ AE LRL Sbjct: 358 QLHIRLRALALGDGVDSVDGEFSARTRHVEALRRAEQHADAADLELGFEQLELAAEELRL 417 Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A +LG+ITG + + LL IFS FCIGK Sbjct: 418 AHEALGEITGKLSADDLLGKIFSSFCIGK 446 >gi|325926224|ref|ZP_08187582.1| tRNA modification GTPase trmE [Xanthomonas perforans 91-118] gi|325543406|gb|EGD14831.1| tRNA modification GTPase trmE [Xanthomonas perforans 91-118] Length = 446 Score = 233 bits (595), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 149/449 (33%), Positives = 242/449 (53%), Gaps = 12/449 (2%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+ TI A+++ A + I+RLSGP Q+ + + PR A F G + Sbjct: 1 MSSSASTIVAIASAAGIGGVGIVRLSGPQSVQIAAQLGIARMQ-PRHAHYARFRDGQGAV 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D G+ + F +P SFTGED E HG ++ ++ ++ R A GEFS RAF N Sbjct: 60 IDDGIALWFHAPHSFTGEDVVELQGHGSPVLLRQLVARCIEL-GARQARAGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GK+DL +AE++ADLI++ R + + G S D LT +R +EA +DF++ Sbjct: 119 GKLDLAQAEAIADLIAAGDLRAARAARRALDGVFSRRVDAVADTLTRLRIHVEAAIDFAD 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E + ++ + + +N ++ + + G +R+G V++G NAGKSSL NALA Sbjct: 179 EP-LDTLGGNQLRDGLGQARNVLAQLLRDAERGRKLRDGLHAVLIGPPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 D AIVTD+ GTTRD L + L+G+ + + DTAG+R+ D +E+EG++R E+E AD Sbjct: 238 GSDRAIVTDVAGTTRDTLHEAIQLDGFELTLVDTAGLRDGGDAIEREGMRRARAELERAD 297 Query: 301 LILLLKEINSKKEI--SFPKNIDFI----FIGTKSDLYSTYT--EEYDHLISSFTGEGLE 352 L L++ + + + +D + +I K DL + +S+ TG+GLE Sbjct: 298 LALVVLDARDPQAARDAIGDAVDAVPRQLWIHNKCDLLGNAASLDANAIAVSAVTGQGLE 357 Query: 353 ELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411 +L +++++ L + + + RH+ L + ++++ A L L++ AE LRL Sbjct: 358 QLHIRLRALALGDGVDSVEGEFSARTRHVQALRRAEQHVDAADLELGFEQLELAAEELRL 417 Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A +LG+ITG + + LL IFS FCIGK Sbjct: 418 AHEALGEITGKLSADDLLGKIFSSFCIGK 446 >gi|90194110|gb|ABD92616.1| ThdF [Actinobacillus pleuropneumoniae serovar 1] Length = 436 Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 154/438 (35%), Positives = 242/438 (55%), Gaps = 29/438 (6%) Query: 18 SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77 + I+R+SGP +V + + K+ PR A+ F DG +LD+G+ + F +P SFTG Sbjct: 6 GGVGILRISGPLAQEVAKEVLGKELK-PRLANYLPFKEQDGTVLDQGIALFFKAPNSFTG 64 Query: 78 EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137 ED E HGG +++ +L+ + + +R+A GEFS +AF N K+DL +AE++ADLI + Sbjct: 65 EDVLELQGHGGQVILDILLKRILTIKGIRIARAGEFSEQAFLNDKLDLAQAEAIADLIDA 124 Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LN 194 +E R +++ + GE S+ Q +D + ++R+++EA +DF +EE + + ++ LN Sbjct: 125 TSEQAARSALKSLQGEFSNKINQLVDSVIYLRTYVEAAIDFPDEE-IDFLADGKIEGHLN 183 Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254 DI+ N + QG I+R G K+VI G NAGKSSL NALA ++ AIVT+I GTT Sbjct: 184 DIIRQLNGVRKEAKQGA---ILREGMKVVIAGRPNAGKSSLLNALAGREAAIVTNIAGTT 240 Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314 RDVL + ++G + I DTAG+RE +D VEK GI+R + E+E AD +LL+ + + Sbjct: 241 RDVLREHIHIDGMPLHIIDTAGLREANDEVEKIGIQRAWDEIEQADHVLLMIDSTEQTAE 300 Query: 315 SF-----------PKNIDFIFIGTKSDLYSTYT--EEYDHL----ISSFTGEGLEELINK 357 +F P+NI I K DL +E D +S+ T G++ L Sbjct: 301 AFKTEWADFLAKLPQNIPVTVIRNKVDLSGEAEGLQELDGFTLIRLSAQTKVGVDLLREH 360 Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLASVS 415 +K + + + +RHL L +LE L + G +++AE LR+ + Sbjct: 361 LKKSMGYQ-SSTEGGFLARRRHLQALETAAEHLERGHIQLTQFFAG-ELLAEELRMVQNA 418 Query: 416 LGKITGCVDVEQLLDIIF 433 L +ITG + LL IF Sbjct: 419 LSEITGQFTSDDLLGNIF 436 >gi|323353023|gb|EGA85323.1| Mss1p [Saccharomyces cerevisiae VL3] Length = 526 Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 179/497 (36%), Positives = 261/497 (52%), Gaps = 65/497 (13%) Query: 4 EKETIFAVSTGA-LPSAISIIRLSGPSCFQVCEFICKKKKPFP-RKASLRYFFGLDGR-- 59 ++ TI+A+ST A SAI+IIR+SG + + P RKA LR + Sbjct: 35 QQPTIYALSTPANQTSAIAIIRISGTHAKYIYNRLXDSSTVPPIRKAILRNIYSPSSCSV 94 Query: 60 ----------ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKM------P 103 +LD LL+ F +P SFTGED E HVHGG AVVN IL + + Sbjct: 95 KPHDQKESKILLDTSLLLYFQAPYSFTGEDVLELHVHGGKAVVNSILXAIGSLHDRSSGK 154 Query: 104 NLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWID 163 ++R A PG+FSRRAF+NGK DL + E + DLI SETE QRR ++ +G+ L+ W + Sbjct: 155 DIRFALPGDFSRRAFQNGKFDLTQLEGIKDLIDSETESQRRSALSSFNGDNKILFENWRE 214 Query: 164 KLTHIRSFIEADLDFSEE--EDVQNFSS--KEVLNDILFLKNDISSHISQGKLGEIIRNG 219 + + + A +DF+++ +++QN V +I+ L++ I + + + + I++NG Sbjct: 215 TIIENMAQLTAIIDFADDNSQEIQNTDEIFHNVEKNIICLRDQIVTFMQKVEKSTILQNG 274 Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 K+V+LG N GKSSL N+L D++IV+DIPGTTRD + +++ GY V I DTAGIRE Sbjct: 275 IKLVLLGAPNVGKSSLVNSLTNDDISIVSDIPGTTRDSIDAMINVNGYKVIICDTAGIRE 334 Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNI------------DFIFIG 326 + D +E GI R + +DL L + + ++ P++I I + Sbjct: 335 KSSDKIEMLGIDRAKKKSVQSDLCLFIVDPTDLSKL-LPEDILAHLSSKTFGNKRIIIVV 393 Query: 327 TKSDLYST--YTEEYDHL------------ISSFTGEGLEELINKIKSILSNKFKKLPFS 372 KSDL S T+ + L +S T EG+E LI S L++ F+ L S Sbjct: 394 NKSDLVSDDEMTKVLNKLQTRLGSKYPILSVSCKTKEGIESLI----STLTSNFESLSQS 449 Query: 373 ------IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDII--AENLRLASVSLGKITG-CV 423 + KR L V Y KD DI+ ENLR AS + KITG + Sbjct: 450 SADASPVIVSKRVSEILKNDVLYGLEEFFKSKDFHNDIVLATENLRYASDGIAKITGQAI 509 Query: 424 DVEQLLDIIFSKFCIGK 440 +E++LD +FSKFCIGK Sbjct: 510 GIEEILDSVFSKFCIGK 526 >gi|255527592|ref|ZP_05394456.1| tRNA modification GTPase TrmE [Clostridium carboxidivorans P7] gi|296186790|ref|ZP_06855191.1| tRNA modification GTPase TrmE [Clostridium carboxidivorans P7] gi|255508725|gb|EET85101.1| tRNA modification GTPase TrmE [Clostridium carboxidivorans P7] gi|296048504|gb|EFG87937.1| tRNA modification GTPase TrmE [Clostridium carboxidivorans P7] Length = 459 Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 161/462 (34%), Positives = 264/462 (57%), Gaps = 28/462 (6%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVC----EFICKKKKPFPRKASLRYFFGLD- 57 E +TI A+ST ISIIR+SG ++ + +KK + ++RY F ++ Sbjct: 2 KEFDTIAAISTVLGEGGISIIRVSGDKALKIVSGLFRGVNEKKLDDIKPYTIRYGFIIEK 61 Query: 58 --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 G LD+ L+ +P SFT ED+ E + HGG+ ILEE+ K R+A PGEF++ Sbjct: 62 DTGDTLDEVLVSYMKAPRSFTAEDTVEINCHGGVVATQRILEEVVK-NGARIAEPGEFTK 120 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG+IDL +AE++ D+I ++TE+ + ++ G++S +KL I + IEA Sbjct: 121 RAFLNGRIDLSQAEAVIDIIRAKTELSMKSAVAQSKGKVSEEINLIRNKLLEIVAHIEAT 180 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +D+ E+ D++ ++ +V + + D+++ + + G+IIR G VI+G N GKSSL Sbjct: 181 VDYPED-DLEEVTADKVTMQLKDVVGDVNNILKTAEEGKIIREGLNTVIVGKPNVGKSSL 239 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N+L ++ AIVT+IPGTTRDV+ ++++G VKI DTAGIRET+D VEK G++++ + Sbjct: 240 LNSLLREKRAIVTEIPGTTRDVIEEYINIDGVPVKIVDTAGIRETNDFVEKIGVEKSKEK 299 Query: 296 VENADLILLLKEI-----NSKKE-ISFPKNIDFIFIGTKSDLYSTYTEE--------YDH 341 + ADLI+L+ ++ N +E I + K+ +I + KSDL +E Y Sbjct: 300 INEADLIILMLDLSRELDNEDREIIDYIKDKKYIILLNKSDLGGKINKEDIKNLNSNYIV 359 Query: 342 LISSFTGEGLEELINKIKSIL---SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398 S+ TGEGL++L I+ + K + + HK L +++ A N Sbjct: 360 ETSAKTGEGLDKLRECIRELFFKGEVTSKDILITNTRHKEALIRANESCAQALDALKNT- 418 Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D+ + ++R A ++LG+ITG E +++ IFS+FC+GK Sbjct: 419 -AAIDLASIDIRNAWMNLGEITGDTLEEDIINKIFSEFCLGK 459 >gi|326801518|ref|YP_004319337.1| tRNA modification GTPase mnmE [Sphingobacterium sp. 21] gi|326552282|gb|ADZ80667.1| tRNA modification GTPase mnmE [Sphingobacterium sp. 21] Length = 456 Score = 233 bits (594), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 164/454 (36%), Positives = 261/454 (57%), Gaps = 23/454 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL----DGRIL 61 +TI A++T AI++IRLSGP ++ + K K ++AS FG DG+IL Sbjct: 7 DTIVALATPTGSGAIAVIRLSGPQAIEIVNGVFKGKD-LSKQASHTVHFGTIRDEDGKIL 65 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121 D+ L +F +P S+T E+ E HG +V I++ + R A PGEF+ RAF +G Sbjct: 66 DEVLASIFIAPHSYTRENVVEVSTHGSKYIVESIIKLFIR-KGARAAKPGEFTLRAFLHG 124 Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181 +DL +AE++ADLI+S + +++M+ M G S+ Q ++L H S IE +LDFSEE Sbjct: 125 GMDLSQAEAVADLIASNSAASHQVAMQQMRGGFSNELKQLREQLIHFASMIELELDFSEE 184 Query: 182 EDVQNFSSKEVLND-ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 DV+ F+++ L D IL + + I + G +++NG IVI G N GKS+L NAL Sbjct: 185 -DVE-FANRSQLKDLILEIIKVLHRLILSFEQGNVLKNGVPIVIAGKPNVGKSTLLNALL 242 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIV+DI GTTRD + +++++G + DTAGIR+T+DI+E +G++RT +++ A Sbjct: 243 NEERAIVSDIAGTTRDTIEDEINIQGVSFRFIDTAGIRDTEDIIEAKGVERTREKMKKAR 302 Query: 301 LILLLKEI--NSKKEISFPK------NIDFIFIGTKSDLYST-YTEEYDHL----ISSFT 347 L++ L + ++ +E+S F+ + K DL S +Y+ L IS+ + Sbjct: 303 LVIYLVDPVDDAFEEVSIQVADLILLRTPFVLVINKKDLLSPDALAQYEPLNPVFISAKS 362 Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIA 406 G+G+E L ++ + +S + + + ++ RH+ L +T LE + D +A Sbjct: 363 GDGVEALKEELLNQVSLRNINVDDVMVTNIRHVEALLKTQASLEKVLYGIDNPITSDFLA 422 Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++R A LG+ITG V E LLD IFSKFCIGK Sbjct: 423 MDIRQALHHLGEITGQVSTEDLLDNIFSKFCIGK 456 >gi|320450418|ref|YP_004202514.1| tRNA modification GTPase TrmE [Thermus scotoductus SA-01] gi|320150587|gb|ADW21965.1| tRNA modification GTPase TrmE [Thermus scotoductus SA-01] Length = 432 Score = 233 bits (594), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 150/442 (33%), Positives = 245/442 (55%), Gaps = 19/442 (4%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD---GR 59 K+ I A++T AI ++RLSG +V + + K P K R+ G +D G Sbjct: 4 KDPICAIATPLGKGAIGVVRLSGEGALEVASRVWRGKDPRKLKGG-RFTLGEVVDPETGE 62 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 +LD+ LL+VF +P S+TGED+ EFH HG +AV+ +LE L K RLA PGEF+ RA+ Sbjct: 63 VLDQALLLVFRAPRSYTGEDACEFHTHGSMAVLRRVLEALVKA-GARLAGPGEFTFRAYM 121 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NGK+DL +AE++ L+ +E ++ RR ++ + G S D+L + + I+A LD+ Sbjct: 122 NGKLDLAQAEAVLALVEAEGDLARRQALRSLEGSFSRKIAALEDRLLSLLAHIQALLDYP 181 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 EE V+ ++ V+ ++L ++ + ++Q + + + G ++ ++G NAGKSSL NAL Sbjct: 182 EE-GVEPLEARRVIGEVL---EEVEALLAQARSSRLAQRGARLALIGAPNAGKSSLLNAL 237 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 + A+V+ IPGTTRD L L+L G + DTAGIR+T D +E+ G++R E A Sbjct: 238 LGYERALVSPIPGTTRDYLEAPLELFGIPLVAVDTAGIRDTLDPLERAGVERALRIAEEA 297 Query: 300 DLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIK 359 DL+L + + ++ + P + + TK+DL + + +SS TGEGL +L I+ Sbjct: 298 DLVLYVADRSAPRPSLPPLPPRTLKVATKADLPPLWEDAEFIPVSSVTGEGLGQLKEAIR 357 Query: 360 SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKI 419 L K + + + H ++ R LE +L E D++ L A +L + Sbjct: 358 EALLGKGGG-EYLLSERQIEALHQARE-RLLEAQNLPE-----DLMGLALEEALKALASL 410 Query: 420 TGCVDV-EQLLDIIFSKFCIGK 440 G +V E+++ +F FC+GK Sbjct: 411 RGRKEVSEEVVARVFQNFCVGK 432 >gi|78213961|ref|YP_382740.1| tRNA modification GTPase TrmE [Synechococcus sp. CC9605] gi|123577422|sp|Q3AGU7|MNME_SYNSC RecName: Full=tRNA modification GTPase mnmE gi|78198420|gb|ABB36185.1| tRNA modification GTPase TrmE [Synechococcus sp. CC9605] Length = 450 Score = 233 bits (594), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 142/441 (32%), Positives = 236/441 (53%), Gaps = 27/441 (6%) Query: 18 SAISIIRLSGPSCFQVCEFI--CKKKKPFPRKASLRYFFG----LDGRILDKGLLIVFPS 71 I++IRLSGP+ + C ++ + S R +G +GR LD+ LL++ Sbjct: 19 GGIAVIRLSGPAAEATGRSVVHCPGRQEW---GSHRVVYGHVIDSEGRRLDEVLLLLMRG 75 Query: 72 PESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESL 131 P SFTGED E H HGG+ V +LE++ + P +R A PGEFS+RA NG++DL AE++ Sbjct: 76 PRSFTGEDVVEIHCHGGVIAVQRVLEKVLRQPGVRRAQPGEFSQRAVLNGRLDLTRAEAV 135 Query: 132 ADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNF 187 ++L+++ + L+M G+ G E++ L + +D+LT + EA +DF EED+ Sbjct: 136 SELVAARSRRAAELAMAGLDGGIQAEITVLRERLLDQLTEL----EARVDF--EEDLPPL 189 Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247 + +L + ++ ++ + G+ G+ +R G ++ ++G N GKSSL N L++++ AIV Sbjct: 190 DGEALLQQLQAVRLELQQLVRDGERGDALRQGLRVALVGRPNVGKSSLLNRLSRRERAIV 249 Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307 TD+PGTTRD+L ++ LEG + + DTAGIR TDD VE+ GI R+ + AD++LL+ + Sbjct: 250 TDLPGTTRDLLESEIVLEGVPITLLDTAGIRSTDDAVEQLGIARSEQALATADVVLLVLD 309 Query: 308 INSKKEIS-------FPKNIDFIFIGTKSDLYS-TYTEEYDHLISSFTGEGLEELINKIK 359 ++ P I I + K+DL + + + D +S+ G G +L+ + Sbjct: 310 GHAGWTAEDAALLARIPAQIPRILVANKADLPAGAFPQPVDVQLSALEGMGEADLVQALL 369 Query: 360 SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKI 419 + ++ + + D +LR A +LG+I Sbjct: 370 ERCGAAGTDGMLVALNQRQRDLAARAAEALARSQEVAAQQLPWDFWTIDLREAIRALGEI 429 Query: 420 TGCVDVEQLLDIIFSKFCIGK 440 TG E +LD +FS+FCIGK Sbjct: 430 TGEELTEAVLDRVFSRFCIGK 450 >gi|149248662|ref|XP_001528718.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL YB-4239] gi|146448672|gb|EDK43060.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL YB-4239] Length = 497 Score = 233 bits (594), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 157/484 (32%), Positives = 260/484 (53%), Gaps = 53/484 (10%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-RKASLRYFFG--LDGRIL 61 + TIFA+ST SAI+++R+SGP + + K + P R AS+R + + ++L Sbjct: 19 QPTIFALSTPLAKSAIAVVRISGPQSSYIYNKLTKTETPPKNRIASVRKLYSPTVSSKLL 78 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN------LRLANPGEFSR 115 D+ L + F P ++TG D E H+HGGIA++ +LE ++ + + +R A PGEFS+ Sbjct: 79 DESLTLFFAKPRTYTGLDLLELHLHGGIAIIKAVLEAISALHDPDNGVIIRQAEPGEFSK 138 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 +AF NGK DL E ++++I++ETE+QR S+ MSG+ ++ +W L + + Sbjct: 139 QAFANGKYDLTALEGISEMINAETELQRLASLASMSGQTKDIFNKWRQDLLENVANLTTL 198 Query: 176 LDFSEEEDVQNFSS--KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233 +DF E+ D++ + V I ++++I ++ + K E++ G + ++G NAGKS Sbjct: 199 IDFGEDHDLEETALLFDSVSEKIKVMESEIGEYLHRTKSSEVLLKGINLTLVGPPNAGKS 258 Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIK 290 S+ N L+ ++ AIV++I GTTRDVL + L++ G+ V + DTAGIR E D+I E+EGI+ Sbjct: 259 SILNTLSNREAAIVSNIAGTTRDVLELPLEIGGFKVVLGDTAGIRLLSEADEI-EQEGIR 317 Query: 291 RTFLEVENADLILLLKEINSKKEISFPKNI---------DFIFIGTKSDLY----STYTE 337 R + E AD ++++ + + KN+ + + K DLY +T + Sbjct: 318 RAMRKSEAADFVIMVLDPTQITGLDEMKNLLSTLHASGKQILIVLNKEDLYQDRVNTLRD 377 Query: 338 EYDH--------------LISSFTGEGLEEL----INKIKSILSNKFKKLPFSIPSHKRH 379 Y H IS TG G+EEL I + K +++ P I S + Sbjct: 378 WYLHKLGVAHSPQQISILPISCLTGAGIEELRLEMIKRFK-VITETVSSDPVIISSRVQD 436 Query: 380 LYHLSQTVRYLEMASLNEKDCGLDII--AENLRLASVSLGKITG-CVDVEQLLDIIFSKF 436 + + E E D D++ E LR + +GKITG + VE++L ++FS F Sbjct: 437 ILQNDVLYGFKEFFVWKEHD---DVVLATECLRQSIEGIGKITGEAIGVEEILGVVFSNF 493 Query: 437 CIGK 440 CIGK Sbjct: 494 CIGK 497 >gi|304439121|ref|ZP_07399040.1| tRNA modification GTPase TrmE [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372480|gb|EFM26067.1| tRNA modification GTPase TrmE [Peptoniphilus duerdenii ATCC BAA-1640] Length = 457 Score = 233 bits (594), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 158/461 (34%), Positives = 257/461 (55%), Gaps = 30/461 (6%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK--KKPFP----RKASLRYFFGLDG 58 KETI A+ST + I I+R+SG ++ + + + +K R S + +G Sbjct: 2 KETIAAISTATGEAGIGIVRMSGEDSVEIADKVFRHIGQKNLTEIKNRMMSYGHIIDENG 61 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 +++D+ L++ +P ++T E+ E + HGGI V +L L R+A GEF++RAF Sbjct: 62 KVIDEVLIVKMMAPNTYTRENMVEIYTHGGIISVRRVLNLLLD-NGARIAEAGEFTKRAF 120 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG++DL +AE++ D+I ++T+ S++ + G L+ + + D++T + I A++DF Sbjct: 121 LNGRLDLSQAEAVIDIIKAKTDESFDQSIKQLEGSLTGIITEISDEVTKMMGIIIANIDF 180 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E+ DV+ + + +LND +K +I++ I G ++R+G VILG N GKSSL NA Sbjct: 181 PED-DVEEYQYETLLNDANKVKENINTLIEGSNRGRLLRDGINTVILGKPNVGKSSLLNA 239 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 + + + AIVTDIPGTTRD++ ++L+G L+KI+DTAGIRET+D VE G+ R +E Sbjct: 240 MLRYEKAIVTDIPGTTRDIIEDYVNLDGILLKITDTAGIRETEDKVEAIGVSRAVKSIEG 299 Query: 299 ADLIL---------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI 343 ADLI+ +LK + KK I D ++ +L S + D++ Sbjct: 300 ADLIIAIFDGSEKFDENDEEILKLLEGKKSIVLVNKADLESKNSEDELKSFFGNR-DYMN 358 Query: 344 SSFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKD 399 S + ++ NKIK + N K F I ++ RH+ L + ++++ A L ++ Sbjct: 359 VSIKKGTILDIENKIKDMFFSGNLKAKEEFYI-NNLRHVRALKEATKFIDSAIEGLETRE 417 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LD I +LR A LG ITG E +LD +FS+FCIGK Sbjct: 418 F-LDCIEVDLRGALDELGNITGETTTEDILDKVFSEFCIGK 457 >gi|90194108|gb|ABD92615.1| ThdF [Actinobacillus lignieresii] gi|90194114|gb|ABD92618.1| ThdF [Actinobacillus pleuropneumoniae] gi|90194116|gb|ABD92619.1| ThdF [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|90194118|gb|ABD92620.1| ThdF [Actinobacillus pleuropneumoniae] Length = 436 Score = 233 bits (594), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 154/438 (35%), Positives = 241/438 (55%), Gaps = 29/438 (6%) Query: 18 SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77 + I+R+SGP +V + + K+ PR A+ F DG +LD+G+ + F +P SFTG Sbjct: 6 GGVGILRISGPLAQEVAKEVLGKELK-PRLANYLPFKDQDGTVLDQGIALFFKAPNSFTG 64 Query: 78 EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137 ED E HGG +++ +L+ + + +R+A GEFS +AF N K+DL +AE++ADLI + Sbjct: 65 EDVLELQGHGGQVILDILLKRILTIKGIRIARAGEFSEQAFLNDKLDLAQAEAIADLIDA 124 Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LN 194 +E R +++ + GE S+ Q +D + ++R+++EA +DF +EE + + ++ LN Sbjct: 125 TSEQAARSALKSLQGEFSNKINQLVDSVIYLRTYVEAAIDFPDEE-IDFLADGKIEGHLN 183 Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254 DI+ N + QG I+R G K+VI G NAGKSSL NALA ++ AIVT+I GTT Sbjct: 184 DIIRQLNGVRKEAKQGA---ILREGMKVVIAGRPNAGKSSLLNALAGREAAIVTNIAGTT 240 Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314 RDVL + ++G + I DTAG+RE D VEK GI+R + E+E AD +LL+ + + Sbjct: 241 RDVLREHIHIDGMPLHIIDTAGLREASDEVEKIGIQRAWDEIEQADHVLLMIDSTEQTAE 300 Query: 315 SF-----------PKNIDFIFIGTKSDLYSTYT--EEYDHL----ISSFTGEGLEELINK 357 +F P+NI I K DL +E D +S+ T G++ L Sbjct: 301 AFKTEWADFLAKLPQNIPVTVIRNKVDLSGEAEGLQELDGFTLIRLSAQTKVGVDLLREH 360 Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLASVS 415 +K + + + +RHL L +LE L + G +++AE LR+ + Sbjct: 361 LKKSMGYQ-SSTEGGFLARRRHLQALETAAEHLERGHIQLTQFFAG-ELLAEELRMVQNA 418 Query: 416 LGKITGCVDVEQLLDIIF 433 L +ITG + LL IF Sbjct: 419 LSEITGQFTSDDLLGNIF 436 >gi|188579254|ref|YP_001916183.1| tRNA modification GTPase TrmE [Xanthomonas oryzae pv. oryzae PXO99A] gi|226704788|sp|B2SUV8|MNME_XANOP RecName: Full=tRNA modification GTPase mnmE gi|188523706|gb|ACD61651.1| tRNA modification GTPase TrmE [Xanthomonas oryzae pv. oryzae PXO99A] Length = 446 Score = 233 bits (594), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 150/449 (33%), Positives = 241/449 (53%), Gaps = 12/449 (2%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+ TI A+++ A + I+RLSGP Q+ + + PR A F G + Sbjct: 1 MSSSTSTIVAIASAAGTGGVGIVRLSGPQSRQIAVQLGVARLQ-PRHAHYARFRDAQGAV 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D G+ + F +P SFTGED E HG ++ ++ ++ R A GEFS RAF N Sbjct: 60 IDDGIALWFNAPHSFTGEDVVELQGHGSPVLLRQLVARCIEL-GARQARAGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GK+DL +AE++AD+I++ R + + G S LT +R +EA +DF++ Sbjct: 119 GKLDLAQAEAIADVIAAGDLRAARAARRALDGVFSRRVDAVAHTLTRLRIHVEAAIDFAD 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E + +V + + + ++ + + G +R+G V++G NAGKSSL NALA Sbjct: 179 EP-LDTLGGNQVRDGLTQARTLLAQLLRDAERGRTLRDGLHAVLIGPPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 D AIVTD+ GTTRD L + L+G+ + + DTAG+R+ D +E+EG++R E+E AD Sbjct: 238 GSDRAIVTDVAGTTRDTLHEAIQLDGFELTLVDTAGLRDGGDAIEREGMRRARAELERAD 297 Query: 301 LILLLKEINSKK--EISFPKNIDFI----FIGTKSDLYSTYT--EEYDHLISSFTGEGLE 352 L L++ + + + ID + +I K DL S + +S+ TG+GLE Sbjct: 298 LALVVLDARDPQAARAAIGDAIDAVPRQLWIHNKCDLLSDAAPLDVNAIAVSAVTGQGLE 357 Query: 353 ELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411 +L +++ + L + + + + RH+ L + R+++ A L L++ AE LRL Sbjct: 358 QLHIRLRELALGDGVESVDGEFSARTRHVEALRRAERHVDAADLELGFEQLELAAEELRL 417 Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A +LG+ITG + + LL IFS FCIGK Sbjct: 418 AHEALGEITGKISADDLLGKIFSSFCIGK 446 >gi|75908210|ref|YP_322506.1| tRNA modification GTPase TrmE [Anabaena variabilis ATCC 29413] gi|123758831|sp|Q3MBM5|MNME_ANAVT RecName: Full=tRNA modification GTPase mnmE gi|75701935|gb|ABA21611.1| tRNA modification GTPase trmE [Anabaena variabilis ATCC 29413] Length = 463 Score = 233 bits (593), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 160/460 (34%), Positives = 245/460 (53%), Gaps = 32/460 (6%) Query: 7 TIFAVSTGALPS--AISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL-----D 57 TI A++T +P ++ I+R+SG + + F K+ + S R +G Sbjct: 10 TIAAIATAIVPQQGSVGIVRVSGSQAIAIAQTLFHAPGKQVWE---SHRILYGYIRHPQT 66 Query: 58 GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 +I+D+ LL++ +P S+T ED EFH HGGI V +L+ L RLA PGEF+ RA Sbjct: 67 RQIVDEALLLLMKAPRSYTREDVVEFHCHGGIMAVQQVLQ-LCLEGGARLAQPGEFTLRA 125 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NG++DL +AES+ADL+ + + + ++ G+ G+L+ Q I + IEA +D Sbjct: 126 FLNGRLDLTQAESIADLVGARSPQAAQTALAGLQGKLAHPIRQLRANCLDILAEIEARID 185 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 F EED+ +++++DI + +IS ++ GE++R G K+ I+G N GKSSL N Sbjct: 186 F--EEDLPPLDDEKIISDIENIAAEISQLLATKDKGELLRTGLKVAIVGRPNVGKSSLLN 243 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 A ++ D AIVTD+PGTTRDV+ L + G V++ DTAGIRET D VEK G++R+ Sbjct: 244 AWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAAN 303 Query: 298 NADLILLLKE-----INSKKEI-SFPKNIDFIFIGTKSDLYST-------YTEEYDHLIS 344 ADL+LL + +EI K+ I + K DL Y + ++ Sbjct: 304 TADLVLLTIDAATGWTTGDQEIYEQVKHRPLILVMNKIDLVDKKLITSLEYPKNITQIVH 363 Query: 345 SFTG--EGLEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDC 400 + +G++ L I I+ + K K + ++R L+Q LE + Sbjct: 364 TAAAQKQGIDALETAILEIVQTGKVKAADMDLAINQRQAAALTQAKISLEQVQATITQQL 423 Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LD +LR A +LG+ITG E +LD IFS+FCIGK Sbjct: 424 PLDFWTIDLRGAIQALGEITGEEVTESVLDRIFSRFCIGK 463 >gi|225181151|ref|ZP_03734597.1| tRNA modification GTPase TrmE [Dethiobacter alkaliphilus AHT 1] gi|225168120|gb|EEG76925.1| tRNA modification GTPase TrmE [Dethiobacter alkaliphilus AHT 1] Length = 460 Score = 233 bits (593), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 159/461 (34%), Positives = 244/461 (52%), Gaps = 25/461 (5%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL----DG 58 HE +TI A++T I I+R+SGP + + + + +P S + ++G G Sbjct: 2 HE-DTIAAIATPVGEGGIGIVRISGPQAKDIGKELFRFHRPVQNPQSHKLYYGHVIGEGG 60 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 +LD+ LL SP ++T ED E + HGGI + LE ++ RLA GEF++RAF Sbjct: 61 EVLDEALLAFMHSPRTYTTEDVVEINCHGGIMPLKKTLERTLQL-GARLAEAGEFTQRAF 119 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG+IDL +AE++ +I + TE +LS+ + G LS G+ +L + + +EA +DF Sbjct: 120 LNGRIDLAQAEAVIQIIRARTETAMQLSVAQLQGRLSQKVGEIRQQLLSVLAHMEASIDF 179 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E +DV++ + ++ +I + G I+R G + I+G N GKSSL NA Sbjct: 180 PEHQDVEDVAFVQLREAAELAHKEIDLLLQTADKGRILREGLRTAIVGRPNVGKSSLLNA 239 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L K+ AIVTDIPGTTRDVL ++L G + + DTAGIRET D VEK G++R+ + Sbjct: 240 LLKEQRAIVTDIPGTTRDVLEESVNLGGIALTMVDTAGIRETTDTVEKMGVERSREALGQ 299 Query: 299 ADLILLLKEIN---SKKEISFPKNID---FIFIGTKSDLYSTYTEEYDHLISSFT----- 347 ADL+L + + + + ++I + I I K+DL S+ + L S Sbjct: 300 ADLVLYVLDASDDLTAEDIELLQAAGEKPLIVIVNKTDLVSSPADVTTKLHSELASVPVV 359 Query: 348 ------GEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE-MASLNEKD 399 GL+EL I S + K ++ + RH LS+++ +L+ M S E Sbjct: 360 PMSVVENRGLQELEEAIVSLVFQGDVKPSQSAMVTSARHKDALSRSLTFLQDMLSALESG 419 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++A +L A +LG+ITG L D IFS FCIGK Sbjct: 420 FAIDLLAIDLHSALDALGEITGETVGADLADEIFSAFCIGK 460 >gi|325915706|ref|ZP_08178011.1| tRNA modification GTPase trmE [Xanthomonas vesicatoria ATCC 35937] gi|325538123|gb|EGD09814.1| tRNA modification GTPase trmE [Xanthomonas vesicatoria ATCC 35937] Length = 428 Score = 233 bits (593), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 148/435 (34%), Positives = 235/435 (54%), Gaps = 21/435 (4%) Query: 20 ISIIRLSGPSCFQVCEFICKKKKPF-PRKASLRYFFGLDGRILDKGLLIVFPSPESFTGE 78 + I+RLSGP Q+ + P PR A F G+++D G+ + F +P SFTGE Sbjct: 1 MGIVRLSGPQAVQIAAQL--GIAPLQPRHAHYARFRDAQGQVIDDGIALWFNAPRSFTGE 58 Query: 79 DSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSE 138 D E HG V+ ++ + R A GEFS RAF NGK+DL +AE++ADLI++ Sbjct: 59 DVVELQGHGSPVVLRQLVACCIAL-GARQARAGEFSERAFLNGKLDLTQAEAIADLIAAG 117 Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILF 198 + + G S D LT +R +EA +DF++E + +V + Sbjct: 118 DVRAAGAARRSLDGVFSRRIDAVSDSLTRLRVHVEAAIDFADEP-LDTLGGTQVREGLQQ 176 Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 + ++ + + G +R+G V++G NAGKSSL NALA D AIVTD+ GTTRD L Sbjct: 177 ARALLAQLLRDAERGRKLRDGMHAVLIGPPNAGKSSLLNALAGSDRAIVTDVAGTTRDTL 236 Query: 259 TIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL---KEINSKKEI- 314 + L+G+ + + DTAG+R+ D +E+EG++R E++ ADL L++ ++ + +E Sbjct: 237 HEAILLDGFELTLVDTAGLRDGGDAIEREGMRRARAELQRADLALVVLDARDPQAAREAI 296 Query: 315 -----SFPKNIDFIFIGTKSDLYSTYTEEYDH---LISSFTGEGLEELINKIKSI-LSNK 365 + P+ ++I K DL T D +S+ TG+GLE+L +++ + LS+ Sbjct: 297 GDAIDAVPRQ---LWIHNKCDLLDNNTPLLDANAVAVSATTGQGLEQLHTRLRELALSDG 353 Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDV 425 + + + RH+ L + ++ + A L L++ AE LRLA +LG+ITG + Sbjct: 354 IESVDGEFSARTRHVDALRRAEQHADAAELELGFEQLELAAEELRLAHAALGEITGKLSA 413 Query: 426 EQLLDIIFSKFCIGK 440 ++LL IFS FCIGK Sbjct: 414 DELLGKIFSSFCIGK 428 >gi|90194098|gb|ABD92610.1| ThdF [Actinobacillus suis ATCC 33415] Length = 436 Score = 233 bits (593), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 154/438 (35%), Positives = 241/438 (55%), Gaps = 29/438 (6%) Query: 18 SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77 + I+R+SGP +V + + K+ PR A+ F DG +LD+G+ + F +P SFTG Sbjct: 6 GGVGILRISGPLAQEVAKEVLGKELK-PRLANYLPFKDQDGTVLDQGIALFFKAPNSFTG 64 Query: 78 EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137 ED E HGG +++ +L+ + + +R+A GEFS +AF N K+DL +AE++ADLI + Sbjct: 65 EDVLELQGHGGQVILDILLKRILAVKGVRIARAGEFSEQAFLNDKLDLAQAEAIADLIDA 124 Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LN 194 +E R +++ + GE S+ Q +D + ++R+++EA +DF +EE + + ++ LN Sbjct: 125 TSEQAARSALKSLQGEFSNKINQLVDSVIYLRTYVEAAIDFPDEE-IDFLADGKIEGHLN 183 Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254 DI+ N + QG I+R G K+VI G NAGKSSL NALA ++ AIVT+I GTT Sbjct: 184 DIIRQLNGVRKEAKQGA---ILREGMKVVIAGRPNAGKSSLLNALAGREAAIVTNIAGTT 240 Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314 RDVL + ++G + I DTAG+RE D VEK GI+R + E+E AD +LL+ + + Sbjct: 241 RDVLREHIHIDGMPLHIIDTAGLREASDEVEKIGIQRAWDEIEQADHVLLMIDSTEQTAE 300 Query: 315 SF-----------PKNIDFIFIGTKSDLYSTYT--EEYDHL----ISSFTGEGLEELINK 357 +F P+NI I K DL +E D +S+ T G++ L Sbjct: 301 AFKTEWADFLAKLPQNIPVTVIRNKVDLSGEAEGLQELDGFTLIRLSAQTKVGVDLLREH 360 Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLASVS 415 +K + + + +RHL L +LE L + G +++AE LR+ + Sbjct: 361 LKKSMGYQ-SSTEGGFLARRRHLQALETAAEHLERGHIQLTQFFAG-ELLAEELRMVQNA 418 Query: 416 LGKITGCVDVEQLLDIIF 433 L +ITG + LL IF Sbjct: 419 LSEITGQFTSDDLLGNIF 436 >gi|154249072|ref|YP_001409897.1| tRNA modification GTPase TrmE [Fervidobacterium nodosum Rt17-B1] gi|205829140|sp|A7HK07|MNME_FERNB RecName: Full=tRNA modification GTPase mnmE gi|154153008|gb|ABS60240.1| tRNA modification GTPase TrmE [Fervidobacterium nodosum Rt17-B1] Length = 459 Score = 233 bits (593), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 170/457 (37%), Positives = 260/457 (56%), Gaps = 23/457 (5%) Query: 2 NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF-----PRKASLRYFFGL 56 N ++TI A+ST AI+IIR+SG ++ E K KK R+ + YF+ Sbjct: 8 NLNRDTIVALSTPPGIGAIAIIRISGNKSLELTEKTIKNKKINIKTLEERRINHGYFYDE 67 Query: 57 DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 +G I+D+ + + F SP S+TGED E + HGGI V N I++ L K+ RLA GEF+RR Sbjct: 68 NGEIIDEIMFVYFKSPRSYTGEDMVEIYCHGGILVTNKIIDTLLKL-GARLAENGEFTRR 126 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NGKIDL++AES+ +I +++E +L+++ + G+LS+ L ++ S IE + Sbjct: 127 AFLNGKIDLIKAESILQIIEAKSEKSLKLALDNLKGKLSNEIEYLRSSLINVLSKIEVSI 186 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D+ ++ DV +E+LND++ +++ + I G I G + I+G N GKS+L Sbjct: 187 DYGDDIDV---PKEEILNDLINVQSFLKEKIKHADKGLHISTGVTMAIVGKPNVGKSTLL 243 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N L +D AIVTDIPGTTRDV+ +L ++G ISDTAGIR T+D VEK GI++ E Sbjct: 244 NRLLVEDRAIVTDIPGTTRDVIKGELKIKGVHFIISDTAGIRMTEDKVEKIGIEKALNEA 303 Query: 297 ENADLILLLKE-----INSKKEI-SFPKNIDFIFIGTKSDLYSTYTEEYDHL-----ISS 345 + +D+IL L + N + I + K+ +FI + K D+ ++ L IS+ Sbjct: 304 KKSDVILFLLDATTGFTNEDEYIYNLIKDCNFIPVWNKIDIAEKVDKDIVFLRNSVVISA 363 Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN--EKDCGLD 403 TG G+ EL KI + + S + KR L +L + V Y + ++N +K+ LD Sbjct: 364 ETGRGMRELEEKILESVKVLVEDGELSHVTSKRQLEYLKR-VEYNIIKAINSLKKNMPLD 422 Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 II+ ++R L ++ G E LLD IFS FC+GK Sbjct: 423 IISIDIRNGLEQLDELMGRNFTEDLLDNIFSNFCVGK 459 >gi|332184417|gb|AEE26671.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Francisella cf. novicida 3523] Length = 450 Score = 233 bits (593), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 156/467 (33%), Positives = 250/467 (53%), Gaps = 47/467 (10%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62 + K+TI A++T I I+R+SG + E + K+ PR A + D I+D Sbjct: 2 YTKDTIVAIATPQGNGGIGIVRISGIDALVIAEKLTKRHLK-PRYAIFSNIYN-DSEIID 59 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 G++I F +P S+TGED E HG ++N I++ A R+A GEF+ RAF N K Sbjct: 60 HGIVIFFKAPLSYTGEDVVEIQAHGNPFILNLIIKA-ALNCGARMAKAGEFTERAFLNNK 118 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 +DL +AE++AD+I++ +E+ + + + + G+ S ++KL ++R ++EA +DF EEE Sbjct: 119 LDLAQAEAVADIINASSEIAAKSAAKSLQGDFSKEINNLLEKLIYLRMYVEASIDFPEEE 178 Query: 183 DVQNF--------SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234 NF S +E+ IL +KN K G I+ G ++++G NAGKSS Sbjct: 179 --INFLEDQKIHTSLEEIYKTILDVKNSC-------KQGVILAEGITLILVGKPNAGKSS 229 Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294 L NALA K+ AIVT I GTTRD++ + + G + I DTAG+R +DDI+E EGIKR Sbjct: 230 LLNALAGKESAIVTSIAGTTRDIVKEHIQINGVPMHIIDTAGLRNSDDIIESEGIKRAIK 289 Query: 295 EVENADLILLLKEINSKKEISF--------------PKNIDFIFIGTKSDLYSTYTEEYD 340 +++ AD +L + + + ++ F PKNID ++ K DL + +D Sbjct: 290 KIQEADQVLFVTDDYTNSQVKFSDIKDIIPEFYDQIPKNIDITYVHNKIDLLKEVPQNHD 349 Query: 341 H--LISSFTGEGL----EELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMA 393 + IS+ G+ E ++NK+ N+ SI + +RH+ ++ ++++A Sbjct: 350 NHIYISAENNIGIDRLKEHILNKVGYTNQNE------SIYTARERHVTAINNAFEHIKLA 403 Query: 394 SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + +++AE L + L ITG + LL IFS FCIGK Sbjct: 404 KQQLELGNGELLAEELLIVQECLNSITGEFSSDDLLGKIFSSFCIGK 450 >gi|289436062|ref|YP_003465934.1| tRNA modification GTPase TrmE [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289172306|emb|CBH28852.1| tRNA modification GTPase TrmE [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 457 Score = 232 bits (592), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 155/464 (33%), Positives = 252/464 (54%), Gaps = 35/464 (7%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRI 60 E +TI A+ST AI+IIRLSGP Q+ + I K AS +G DG + Sbjct: 2 EFDTIAAISTPPGEGAIAIIRLSGPEAIQIADRIFYAKNSLSEAASHTIHYGHIKEDGEV 61 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +++ ++ V +P++FT ED E + HGGI VN +L+ L + LA PGEF++RAF N Sbjct: 62 IEEVMVTVMRAPKTFTREDVVEINAHGGIVSVNRVLQLLLR-NGANLAEPGEFTKRAFLN 120 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G+IDL +AE++ DLI ++T+ +++ M G LS L ++ + +E ++D+ E Sbjct: 121 GRIDLSQAEAVMDLIRAKTDRAMGVAIRQMDGNLSRLIRNLRQEILDALAQVEVNIDYPE 180 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 +DV+ + + +L ++ + + G+I+R G I+G N GKSSL N L Sbjct: 181 YDDVEEMTQRMLLEKTELVRASVEQLLQTASQGKILREGLATAIIGRPNVGKSSLLNQLI 240 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 +++ AIVTDI GTTRD++ +++ G +++ DTAGIRET+DIVEK G++R+ +++AD Sbjct: 241 QEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETEDIVEKIGVERSRKALKDAD 300 Query: 301 LILLLKEINSKKEISFPKNI--------DFIFIGTKSDLYSTY-TEEYDHL--------I 343 ILL+ +N +E++ +++ + K+DL E L Sbjct: 301 FILLV--LNQNEELTIEDEALFEAASGHNYVVVLNKTDLEQRLDIERVRELAGANPVVET 358 Query: 344 SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402 S EGLE L + IK++ + + S+ RH+ L Q + SLN G+ Sbjct: 359 SLIKDEGLEALEDAIKTLFFAGDIDAGDATYVSNVRHIALLHQA-----LESLNAVTTGI 413 Query: 403 ------DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 DI+ ++ A LG+ITG ++LLD +F++FC+GK Sbjct: 414 QLGMPVDIVQIDMTRAWDLLGEITGDSVQDELLDQLFNQFCLGK 457 >gi|313635544|gb|EFS01763.1| tRNA modification GTPase TrmE [Listeria seeligeri FSL N1-067] Length = 457 Score = 232 bits (592), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 155/464 (33%), Positives = 252/464 (54%), Gaps = 35/464 (7%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRI 60 E +TI A+ST AI+IIRLSGP Q+ + I K AS +G DG + Sbjct: 2 EFDTIAAISTPPGEGAIAIIRLSGPEAIQIADRIFYAKNSLSEAASHTIHYGHIKEDGEV 61 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +++ ++ V +P++FT ED E + HGGI VN +L+ L + LA PGEF++RAF N Sbjct: 62 IEEVMVTVMRAPKTFTREDVVEINAHGGIVSVNRVLQLLLR-NGANLAEPGEFTKRAFLN 120 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G+IDL +AE++ DLI ++T+ +++ M G LS L ++ + +E ++D+ E Sbjct: 121 GRIDLSQAEAVMDLIRAKTDRAMGVAIRQMDGNLSRLIRNLRQEILDALAQVEVNIDYPE 180 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 +DV+ + + +L ++ + + G+I+R G I+G N GKSSL N L Sbjct: 181 YDDVEEMTQRMLLEKTELVRASVEQLLQTASQGKILREGLATAIIGRPNVGKSSLLNQLI 240 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 +++ AIVTDI GTTRD++ +++ G +++ DTAGIRET+DIVEK G++R+ +++AD Sbjct: 241 QEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETEDIVEKIGVERSRKALKDAD 300 Query: 301 LILLLKEINSKKEISFPKNI--------DFIFIGTKSDLYSTY-TEEYDHL--------I 343 ILL+ +N +E++ +++ + K+DL E L Sbjct: 301 FILLV--LNQNEELTIEDEALFEAASGHNYVVVLNKTDLEQKLDIERVRELAGANPVVET 358 Query: 344 SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402 S EGLE L + IK++ + + S+ RH+ L Q + SLN G+ Sbjct: 359 SLIKDEGLEALEDAIKTLFFAGDIDAGDATYVSNVRHIALLHQA-----LESLNAVTTGI 413 Query: 403 ------DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 DI+ ++ A LG+ITG ++LLD +F++FC+GK Sbjct: 414 QLGMPVDIVQIDMTRAWDLLGEITGDSVQDELLDQLFNQFCLGK 457 >gi|168183721|ref|ZP_02618385.1| tRNA modification GTPase TrmE [Clostridium botulinum Bf] gi|237797100|ref|YP_002864652.1| tRNA modification GTPase TrmE [Clostridium botulinum Ba4 str. 657] gi|182673145|gb|EDT85106.1| tRNA modification GTPase TrmE [Clostridium botulinum Bf] gi|229263227|gb|ACQ54260.1| tRNA modification GTPase TrmE [Clostridium botulinum Ba4 str. 657] Length = 461 Score = 232 bits (592), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 165/469 (35%), Positives = 265/469 (56%), Gaps = 42/469 (8%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--------KPFPRKASLRYFFG 55 E +TI AV+T ISIIR+SG + I K K KP+ S+RY F Sbjct: 3 EFDTIAAVATPVGEGGISIIRISGDKSLDIVSSIFKGKNDRSLDDIKPY----SMRYGFI 58 Query: 56 LDGR---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGE 112 ++ ++D+ L+ P SFT ED+ E + HGG+ IL+EL K RLA PGE Sbjct: 59 IEKESKEMIDEVLVSYMKGPRSFTAEDTLEINCHGGVIPTKKILKELIK-SGARLAEPGE 117 Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172 F++RAF NG+IDL +AE++ D+I S+T++ + +++ G LS +++ I + I Sbjct: 118 FTKRAFLNGRIDLSQAEAVIDIIRSKTDLSMKSALKQAEGTLSKEINSIRNRMIKIIAHI 177 Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232 EA +D+ E+ D++ + +++ D+ + N I + IS + G+I+R G VI+G N GK Sbjct: 178 EATVDYPED-DLEEITGQKIKVDLKEIINKIDNLISASEEGKILREGLNTVIVGKPNVGK 236 Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292 SSL NAL ++ AIVT+IPGTTRDV+ ++++G +KI DTAGIRET+D+VEK G++++ Sbjct: 237 SSLLNALINENKAIVTEIPGTTRDVIEEYINIDGIPIKIVDTAGIRETEDVVEKIGVEKS 296 Query: 293 FLEVENADLILLL----KEINSK--KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF 346 +++ ADL++ + +EI+ + + + F KN +I + K DL EE +H I Sbjct: 297 KEKIDEADLVIFMLDLSREIDEEDIEIMDFIKNKKYIVLLNKLDLNKDLNEE-NHFIKEL 355 Query: 347 -----------TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT----VRYLE 391 GL EL IK++ + K I ++ RH L ++ ++ +E Sbjct: 356 DSKYIIKTSVKNNSGLNELKECIKNLFFSGEIKSDELIVTNARHQEALIRSRESCIQAIE 415 Query: 392 MASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 S + +D+ + ++R A LG+ITG E ++D IFS+FC+GK Sbjct: 416 TLS---DEISIDLASIDIRNAWKYLGEITGDTLDENIIDKIFSEFCLGK 461 >gi|281412323|ref|YP_003346402.1| tRNA modification GTPase TrmE [Thermotoga naphthophila RKU-10] gi|281373426|gb|ADA66988.1| tRNA modification GTPase TrmE [Thermotoga naphthophila RKU-10] Length = 450 Score = 232 bits (592), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 162/455 (35%), Positives = 255/455 (56%), Gaps = 26/455 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCE-FICKKKKPFPRKASLRYFFGLDGRILDKG 64 +TI AV+T AI+I+RLSGP ++V + + + K PR+A + + +G +D+ Sbjct: 2 DTIVAVATPHGKGAIAILRLSGPDSWKVVQKHLRTRSKIIPRRA-IHGWIHENGEDVDEV 60 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 ++I + SP+S+TGED E HGG VV +L+ L R+A PGEF++RAF NGK+D Sbjct: 61 VVIFYKSPKSYTGEDMVEVMCHGGPLVVKKMLD-LFLRSGTRMAEPGEFTKRAFLNGKMD 119 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L AE++ DLI +++E +LS+ + G L L I + I +LD+ +E + Sbjct: 120 LTSAEAVRDLIEAKSETGLKLSLRNLKGGLRGFIENLRRDLIEILAEIRVELDYPDEIET 179 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 V+ + +K +++ + + G ++ G ++VI+G N GKS+L N L +D Sbjct: 180 DTGG---VVTKLEQIKEELTEELRKADAGILLNRGLRMVIVGKPNVGKSTLLNRLLNEDR 236 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLIL 303 AIVTDIPGTTRDV++ ++ ++G L +I DTAG+R ET+D+VE+ GI+RT EVE AD++L Sbjct: 237 AIVTDIPGTTRDVISEEIVIKGILFRIVDTAGVRSETNDLVERLGIERTLQEVEKADIVL 296 Query: 304 LLKEINS------KKEISFPKNIDFIFIGTKSDLYSTYTEEY--------DHL--ISSFT 347 + + +S +K + KN ++ + K D+ EE H+ IS+ Sbjct: 297 FVLDASSPLDEEDRKILERIKNKRYLVVINKVDVVEKINEEEIKNKLGTDRHMVKISALK 356 Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDII 405 GEGLE+L I F++ S+ ++ R L +LE A SL E +D+ Sbjct: 357 GEGLEKLEEAIYRETQEIFERGSDSLITNLRQKQLLENVKAHLEDAIRSLKE-GMPVDMA 415 Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + +L A L ++TG E LLD IFS FC+GK Sbjct: 416 SIDLERALNLLDEVTGRSFREDLLDTIFSNFCVGK 450 >gi|90194104|gb|ABD92613.1| ThdF [Actinobacillus equuli subsp. equuli] Length = 436 Score = 232 bits (592), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 154/438 (35%), Positives = 241/438 (55%), Gaps = 29/438 (6%) Query: 18 SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77 + I+R+SGP +V + + K+ PR A+ F DG +LD+G+ + F +P SFTG Sbjct: 6 GGVGILRISGPLAQEVAKEVLGKELN-PRLANYLPFKDQDGTVLDQGIALFFKAPNSFTG 64 Query: 78 EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137 ED E HGG +++ +L+ + + +R+A GEFS +AF N K+DL +AE++ADLI + Sbjct: 65 EDVLELQGHGGQVILDILLKRILAVKGVRIARAGEFSEQAFLNDKLDLAQAEAIADLIDA 124 Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LN 194 +E R +++ + GE S+ Q +D + ++R+++EA +DF +EE + + ++ LN Sbjct: 125 TSEQAARSALKSLQGEFSNKINQLVDSVIYLRTYVEAAIDFPDEE-IDFLADGKIEGHLN 183 Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254 DI+ N + QG I+R G K+VI G NAGKSSL NALA ++ AIVT+I GTT Sbjct: 184 DIIRQLNGVRKEAKQGA---ILREGMKVVIAGRPNAGKSSLLNALAGREAAIVTNIAGTT 240 Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314 RDVL + ++G + I DTAG+RE D VEK GI+R + E+E AD +LL+ + + Sbjct: 241 RDVLREHIHIDGMPLHIIDTAGLREASDEVEKIGIQRAWDEIEQADHVLLMIDSTEQTAE 300 Query: 315 SF-----------PKNIDFIFIGTKSDLYSTYT--EEYDHL----ISSFTGEGLEELINK 357 +F P+NI I K DL +E D +S+ T G++ L Sbjct: 301 AFKTEWADFLAKLPQNIPVTVIRNKVDLSGEAEGLQELDGFTLIRLSAQTKVGVDLLREH 360 Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLASVS 415 +K + + + +RHL L +LE L + G +++AE LR+ + Sbjct: 361 LKKSMGYQ-SSTEGGFLARRRHLQALETAAEHLERGHIQLTQFFAG-ELLAEELRMVQNA 418 Query: 416 LGKITGCVDVEQLLDIIF 433 L +ITG + LL IF Sbjct: 419 LSEITGQFTSDDLLGNIF 436 >gi|160914941|ref|ZP_02077155.1| hypothetical protein EUBDOL_00949 [Eubacterium dolichum DSM 3991] gi|158433481|gb|EDP11770.1| hypothetical protein EUBDOL_00949 [Eubacterium dolichum DSM 3991] Length = 442 Score = 232 bits (592), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 149/448 (33%), Positives = 262/448 (58%), Gaps = 20/448 (4%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD---GRIL 61 ++TI A+ST A+ AISIIR+SG + + + ++ Y F +D + Sbjct: 3 QDTIAAISTAAVDGAISIIRMSGNDAIDIADRLTSIDLTKKASHTISYGFIIDPITKEEV 62 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121 D+ L+ VF +P++FT ED E + HGG + IL+ L RLA GEF+RRAF +G Sbjct: 63 DEVLISVFHAPKTFTCEDIVEINCHGGRFITKKILQ-LCLAQGARLAEAGEFTRRAFLHG 121 Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181 +IDL +AE++ D+I ++T + RL+M G+ G + +L I + + + IE ++D+ E Sbjct: 122 RIDLTQAEAINDMIMADTNVNARLAMHGIKGSVKALLDPLISTMLDMIANIEVNIDYPEY 181 Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 +DV+ +++++L I + + G++++ G K I+G N GKSSL NAL + Sbjct: 182 DDVEQLTNEKLLPKAQVWLKKIDEILDKANSGQMLKEGIKTAIIGKPNVGKSSLLNALLE 241 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 +D AIVTDI GTTRD++ + L G + + DTAGIRET+D+VE+ GI+R+ +E A L Sbjct: 242 EDKAIVTDIAGTTRDIVEGRIHLSGLTLHLIDTAGIRETEDVVEQIGIQRSIKAIEEAQL 301 Query: 302 ILLL----KEINSKKE--ISFPKNIDFIFIGTKSDLYSTYTEEYDHL-ISSFTGEGLEEL 354 ++++ +EI+++ E ++ K+ I + KSDL ++++ + IS+ GE ++ L Sbjct: 302 VIVVLDGSREIDAEDEKLLALAKDKTHIVVYNKSDL-----KQHEGICISAAKGE-IQPL 355 Query: 355 INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLA 412 ++KI + + + + +++R + + + + + A ++N + LD++A +++ A Sbjct: 356 LDKIHELYDHHQLVVEEPLLTNERQISQMLKAKQSMLQAIQAMNMQ-MTLDLVAIDIQDA 414 Query: 413 SVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +L +I G V E LLD +FS FC+GK Sbjct: 415 YTALKEILGEVHHEDLLDTLFSNFCLGK 442 >gi|22298504|ref|NP_681751.1| tRNA modification GTPase TrmE [Thermosynechococcus elongatus BP-1] gi|223635295|sp|P0C8N9|MNME_SYNEL RecName: Full=tRNA modification GTPase mnmE gi|223635296|sp|P0C8P1|MNME_THEEB RecName: Full=tRNA modification GTPase mnmE gi|5420315|emb|CAB46651.1| possible thiophene and furan oxidation protein [Synechococcus elongatus] gi|22294684|dbj|BAC08513.1| thiophen and furan oxidation protein [Thermosynechococcus elongatus BP-1] Length = 469 Score = 232 bits (592), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 155/479 (32%), Positives = 265/479 (55%), Gaps = 49/479 (10%) Query: 1 MNHEKETIFAVSTGALPS--AISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL 56 M H +TI A++T +P +I I+RLSG + + F K+P+ S R +G Sbjct: 1 MRHFHDTIAAIATAIVPQQGSIGIVRLSGAKAVAIAQSLFEAPGKQPW---ESHRILYGY 57 Query: 57 --DGRI---LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPG 111 D + +D+ LL++ +P S+T ED EFH HGG+ V +L+ L RLA+PG Sbjct: 58 VRDPQTKERVDEALLLLMLAPRSYTREDVVEFHCHGGLIPVQRVLQ-LCVAAGARLADPG 116 Query: 112 EFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSF 171 EF+ RAF NG++DL +AES+A+L+++++ ++++ G++G+L+ Q + + Sbjct: 117 EFTLRAFLNGRLDLTQAESVAELVAAQSTTAAQIALAGLTGKLARPLQQIRQTCLSLLAE 176 Query: 172 IEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAG 231 IEA LDF++E + + I L++ + + ++ + G +IR G K+ I+G N G Sbjct: 177 IEARLDFTDE--LPPLDPAAIAEQIRQLQHQVEAFLATAERGALIRTGLKVAIVGRPNVG 234 Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR 291 KSSL NA ++ D AIVTD+PGTTRD++ L + G +++ DTAGIRETD++VE+ G++R Sbjct: 235 KSSLLNAWSRSDRAIVTDLPGTTRDIVESQLVVGGIPIQVLDTAGIRETDNLVEQIGVQR 294 Query: 292 TFLEVENADLILLLKEINSKKEIS----------------FPKNIDFIFIGTKSDLYSTY 335 + +ADLILL+ + + + P+++ + + K+DL S Sbjct: 295 SRQAALSADLILLVIDASQGWTAADQAIYDQLQLKQRRQQAPQSV--LVVLNKADLLSET 352 Query: 336 TEEYD----------HLISSFTGEGLEELINKIKSILSNK---FKKLPFSIPSHKRHLY- 381 TE D L+S+ + G+E+L + I ++ + L F+I + L Sbjct: 353 TEVKDIPLPIAPIPTVLLSALSQRGIEQLEDAILHLVQGQGVSAANLDFAINQRQAGLLE 412 Query: 382 HLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + Q++ ++ +A+++ + LD +L A+ +LG +TG E +L IFS+FCIGK Sbjct: 413 QVHQSLNHV-LAAIDAQ-LPLDFWTIDLHAAARALGTLTGEEVTESVLTEIFSRFCIGK 469 >gi|150008732|ref|YP_001303475.1| tRNA modification GTPase TrmE [Parabacteroides distasonis ATCC 8503] gi|205415787|sp|A6LDT9|MNME_PARD8 RecName: Full=tRNA modification GTPase mnmE gi|149937156|gb|ABR43853.1| putative GTPase, ThdF family [Parabacteroides distasonis ATCC 8503] Length = 461 Score = 232 bits (592), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 157/464 (33%), Positives = 251/464 (54%), Gaps = 35/464 (7%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP-----FPRKASLRY--FFGLDGR 59 TI A+ST I++IR+SGP F++C+ I + KK + +L Y G + Sbjct: 3 TICAISTAPGVGGIAVIRVSGPDTFKICDRIFRPKKAGKSLSTQKAYTLTYGSIVGNNDE 62 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 +D+ + VF +P SFTGED+ E HG + IL+ L R+A PGE+++RAF Sbjct: 63 TIDEVIAAVFRAPHSFTGEDTVEITCHGSTYIQQQILQSLIS-SGCRIAQPGEYTQRAFM 121 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NGK+DL +AE++ADLI+S + Q RL++ M G S + ++L H S +E +LDFS Sbjct: 122 NGKMDLSQAEAVADLIASTSAGQHRLALSQMRGGFSRELAELRNQLLHFTSLMELELDFS 181 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQG-KLGEIIRNGYKIVILGHSNAGKSSLFNA 238 + E+++ F+ + L + + S ++Q +G I+NG + I+G +NAGKS+L NA Sbjct: 182 DHEELE-FADRSELRTLADHIEQVISKLAQSFSVGNAIKNGIPVAIIGETNAGKSTLLNA 240 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L +D AIV+DI GTTRDV+ +++ G L + DTAGIRET D +E GI+R+F ++ Sbjct: 241 LLNEDKAIVSDIHGTTRDVIEDTININGQLFRFIDTAGIRETSDAIEALGIERSFKALDQ 300 Query: 299 ADLILLLKEINSK--------KEISFPK--NIDFIFIGTKSDL--------YSTYTEEYD 340 A +++L+ ++ +EI+ P+ N I K D+ +S TE + Sbjct: 301 AQIVILMYDLTRDLKDFEAFYQEIA-PRLTNKSVILAMNKCDVLPTSSLPTFSFPTEGWH 359 Query: 341 HLISSFTGE----GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396 + S + L++L+ ++ SI + + + H L H + + ++ LN Sbjct: 360 QIAISAKSKLHIAELQQLLTEVSSIPTLHQSDIIVTNVRHFEALTHALEAIHRVQ-EGLN 418 Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G D I+++LR L I G V +Q+L IF FCIGK Sbjct: 419 SSLSG-DFISQDLRECIFHLSDIVGEVTTDQVLGNIFRHFCIGK 461 >gi|153937917|ref|YP_001392999.1| tRNA modification GTPase TrmE [Clostridium botulinum F str. Langeland] gi|166200475|sp|A7GJN9|MNME_CLOBL RecName: Full=tRNA modification GTPase mnmE gi|152933813|gb|ABS39311.1| tRNA modification GTPase TrmE [Clostridium botulinum F str. Langeland] Length = 461 Score = 232 bits (591), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 163/469 (34%), Positives = 263/469 (56%), Gaps = 42/469 (8%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--------KPFPRKASLRYFFG 55 E +TI AV+T ISIIR+SG + I K K KP+ S+RY F Sbjct: 3 EFDTIAAVATPVGEGGISIIRISGDKSLDIVSSIFKGKNDRTLDDIKPY----SMRYGFI 58 Query: 56 LDGR---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGE 112 ++ ++D+ L+ P SFT ED+ E + HGG+ IL+EL K RLA PGE Sbjct: 59 IEKESKEMIDEVLVSYMKGPRSFTAEDTLEINCHGGVIPTKKILKELIK-SGARLAEPGE 117 Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172 F++RAF NG+IDL +AE++ D+I S+T++ + +++ G LS +++ I + I Sbjct: 118 FTKRAFLNGRIDLSQAEAVIDIIRSKTDLSMKSALKQAEGTLSKEINSIRNRMIKIIAHI 177 Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232 EA +D+ E+ D++ + +++ D+ + N I + IS + G+I+R G VI+G N GK Sbjct: 178 EATVDYPED-DLEEITGQKIKVDLKEIINKIDNLISASEEGKILREGLNTVIVGKPNVGK 236 Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292 SSL NAL ++ AIVT+IPGTTRDV+ ++++G KI DTAGIRET+D+VEK G++++ Sbjct: 237 SSLLNALINENKAIVTEIPGTTRDVIEEYINIDGIPTKIVDTAGIRETEDVVEKIGVEKS 296 Query: 293 FLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF 346 +++ ADL++ + +++ K + + F KN +I + K DL EE +H I Sbjct: 297 KEKIDEADLVIFMLDLSKKIDEEDIEIMDFIKNKKYIVLLNKLDLNKDLNEE-NHFIKEL 355 Query: 347 -----------TGEGLEELINKIKSILSN---KFKKLPFSIPSHKRHLYHLSQT-VRYLE 391 GL EL IK++ + K +L + H+ L ++ ++ +E Sbjct: 356 DSKYIIKTSVKNNSGLNELKECIKNLFFSGEIKSDELTVTNARHQEALIRSRESCIQAIE 415 Query: 392 MASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 S + +D+ + ++R A LG+ITG E ++D IFS+FC+GK Sbjct: 416 TLS---DEISIDLASIDIRNAWKYLGEITGDTLDENIIDKIFSEFCLGK 461 >gi|241668179|ref|ZP_04755757.1| tRNA modification GTPase TrmE [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876714|ref|ZP_05249424.1| tRNA modification GTPase trmE [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842735|gb|EET21149.1| tRNA modification GTPase trmE [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 450 Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 147/454 (32%), Positives = 247/454 (54%), Gaps = 21/454 (4%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62 + K+TI AV+T I I+R+SG + E + KK+ PR A+ + + I+D Sbjct: 2 YTKDTIVAVATPQGNGGIGIVRISGSDALSIAEKLTKKR-LIPRYATFCNIYNTN-EIID 59 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 G++I F SP S+TGED E HG ++N I++ + R+AN GEF+ RAF N K Sbjct: 60 HGIVIFFNSPNSYTGEDVVEIQAHGNPFILNLIIKATLEY-GARMANAGEFTERAFLNSK 118 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 +DL +AE++AD+I++ +E + + + + G+ S ++KL ++R ++EA +DF EEE Sbjct: 119 LDLTQAEAVADIINASSETAAKSAAKSLQGDFSKEINNLLEKLIYLRMYVEASIDFPEEE 178 Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 + +++ N + + I + K G I+ G ++++G NAGKSSL NALA K Sbjct: 179 -INFLEDQKIHNSLQDIYKTILDVKNSCKQGAILVEGITLILVGKPNAGKSSLLNALAGK 237 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 + AIVT I GTTRD++ + + G + I DTAG+R +DDI+E EGIKR +++ AD I Sbjct: 238 ESAIVTSIAGTTRDIVKEHIQINGVPMHIIDTAGLRSSDDIIESEGIKRAIKKIQEADQI 297 Query: 303 LLLKEINSKKEISF--------------PKNIDFIFIGTKSDLYSTYTEEYDH--LISSF 346 L + + + ++ F PK+ID ++ K DL +++ IS+ Sbjct: 298 LFVTDDYTNSQVKFSDIKDIIPEFYHQIPKDIDITYVHNKIDLLKEVPLNHNNHIYISAE 357 Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIA 406 + G+++L + I + + + + +RH+ + ++++A + +++A Sbjct: 358 SNIGIDKLKDHILAKVGYTTQNESI-YTARERHVTAIDNAFDHIKLAKEQLELGNGELLA 416 Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E L + L ITG + LL IFS FCIGK Sbjct: 417 EELLIVQEHLNSITGEFSSDDLLGEIFSSFCIGK 450 >gi|90194134|gb|ABD92628.1| ThdF [Mannheimia granulomatis] Length = 436 Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 152/437 (34%), Positives = 244/437 (55%), Gaps = 29/437 (6%) Query: 19 AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGE 78 + I+R+SGP V E + KK PR A+ F DG +LD+G+ + F +P SFTGE Sbjct: 7 GVGILRVSGPLAETVAEAVLGKKLQ-PRLANYLPFKDEDGTVLDQGIALFFKAPNSFTGE 65 Query: 79 DSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSE 138 D E HGG +++ +++ + ++ +R+A GEFS +AF N K+DL +AE++ADLI + Sbjct: 66 DVLELQGHGGQVILDLLIKRILQVNGIRIARAGEFSEQAFLNDKLDLAQAEAIADLIDAT 125 Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LND 195 +E R +++ + GE S+ Q +D + ++R+++EA +DF +EE + + ++ LN+ Sbjct: 126 SEQAARSALKSLQGEFSNKINQLVDSVIYLRTYVEAAIDFPDEE-IDFLADGKIESKLNE 184 Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255 I+ N + + K G I+R G K+VI G NAGKSSL NALA ++ AIVT+I GTTR Sbjct: 185 II---NQLDGVRREAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREAAIVTNIAGTTR 241 Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 DVL + ++G + I DTAG+R+T D VE+ GIKR + E+ AD +LL+ + ++ Sbjct: 242 DVLREHIHIDGMPLHIIDTAGLRDTGDEVERIGIKRAWDEIAQADHVLLMIDSTEQQADQ 301 Query: 316 F-----------PKNIDFIFIGTKSDLYS-----TYTEEYDHL-ISSFTGEGLEELINKI 358 F PKNI I K DL +++ + +S+ T G++ L + + Sbjct: 302 FRSEWADFLEKLPKNIPVTVIRNKVDLSGESEGLIQVDDFTMIRLSAQTKVGIDLLRDHL 361 Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLASVSL 416 K + + + +RHL L +LE L + G +++AE LR+ +L Sbjct: 362 KKSMGYQ-SSTEGGFLARRRHLQALETAATHLERGHVQLTQFFAG-ELLAEELRMVQNAL 419 Query: 417 GKITGCVDVEQLLDIIF 433 +ITG + LL IF Sbjct: 420 SEITGQFTSDDLLGNIF 436 >gi|110802832|ref|YP_699904.1| tRNA modification GTPase TrmE [Clostridium perfringens SM101] gi|123047103|sp|Q0SPQ3|MNME_CLOPS RecName: Full=tRNA modification GTPase mnmE gi|110683333|gb|ABG86703.1| tRNA modification GTPase TrmE [Clostridium perfringens SM101] Length = 458 Score = 231 bits (590), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 160/463 (34%), Positives = 266/463 (57%), Gaps = 33/463 (7%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK--------KKKPFPRKASLRYFFG 55 E +TI A++T I+IIR+SG ++ I + KP+ ++RY Sbjct: 3 EFDTIAAIATALGEGGIAIIRVSGNKALEIVNKIFRGINGKDLLDIKPY----TMRYGHM 58 Query: 56 LD--GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEF 113 +D I+D+ ++ P SFT ED+ E + HGGI N +L+ + K RLA PGEF Sbjct: 59 IDENNEIIDEVIVSFMKGPRSFTAEDTVEINCHGGIVATNKVLQNVIK-AGARLAEPGEF 117 Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173 ++RAF NG+IDL +AE++ D+I+++TE+ + +M G LS+ + I + IE Sbjct: 118 TKRAFLNGRIDLSQAEAVMDIITAKTELSMKSAMTQSQGRLSTEINNLRKEALDILALIE 177 Query: 174 ADLDFSEE-EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232 +DF+E+ E+ +V D++ L+ +++ I G++IR+G +VI+G N GK Sbjct: 178 YAVDFTEDDEEPDETIPVKVKEDVITLRGKVNNLIDTADEGKLIRDGLSMVIVGKPNVGK 237 Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292 SSL NAL ++ AIVTDI GTTRDV+ ++L+G V++ DTAGIRET+D+VEK G++++ Sbjct: 238 SSLLNALLNENRAIVTDIAGTTRDVIEEYINLDGIPVRLVDTAGIRETEDVVEKIGVEKS 297 Query: 293 FLEVENADLILLL----KEIN--SKKEISFPKNIDFIFIGTKSDLYSTYTEE-YDHL--- 342 ++ ADL++L+ +E++ K+ I + K+ +I + K DL + E D+L Sbjct: 298 KEKINEADLVILMLDTSRELDEEDKEIIDYIKDRKYIVLLNKVDLDRKLSSEIVDNLENK 357 Query: 343 --ISSFTGEGLEELINKIKSILSN---KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE 397 +S+ TG G+++L +KIK + N + + + HK LY S+ + + LN Sbjct: 358 IELSAKTGFGIDDLKSKIKDLFFNGSIDAESVMVTNTRHKEALYRASENLDG-ALNGLNN 416 Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + LD+++ + A +LG+ITG E L++ IF++FC GK Sbjct: 417 NEF-LDLVSIYVTSALRALGEITGAELEEDLVNKIFAEFCCGK 458 >gi|126695547|ref|YP_001090433.1| tRNA modification GTPase TrmE [Prochlorococcus marinus str. MIT 9301] gi|166234804|sp|A3PAQ7|MNME_PROM0 RecName: Full=tRNA modification GTPase mnmE gi|126542590|gb|ABO16832.1| putative thiophen / furan oxidation protein [Prochlorococcus marinus str. MIT 9301] Length = 460 Score = 231 bits (590), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 165/442 (37%), Positives = 240/442 (54%), Gaps = 25/442 (5%) Query: 19 AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DGRILDKGLLIVFPSPE 73 ++IIR+SG C+ I + K + + S R F G + +D+ L++V SP Sbjct: 24 GVAIIRVSGKDAINSCKKIVQTKSKYAWE-SHRVFRGFIQENKQNKFIDEVLILVMKSPN 82 Query: 74 SFTGEDSAEFHVHGGIAVVNGILE-ELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLA 132 SFTGED E H HGGI +VN +L+ L+ +R+ANPGEFS+RAF NGKIDL +AES+ Sbjct: 83 SFTGEDVVELHCHGGIIIVNKVLKILLSSNSRVRIANPGEFSQRAFLNGKIDLTQAESIN 142 Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192 LI++ L+ G+ GE+ + L + IEA +DF EED +F + Sbjct: 143 QLINASNTRSAELAFSGIQGEIKKKIDDIKNDLINQLCEIEARVDF--EEDFTDFDYTKY 200 Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252 L +I +K I I K I NG I ++G +N GKSSL N LAKK+ AIVT+IPG Sbjct: 201 LKNIKKVKEKIELLIENAKRNSYIHNGISIALIGKTNVGKSSLLNLLAKKEKAIVTNIPG 260 Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI---- 308 TTRDV+ ++L + +KI DTAGIRET + +E GIK++F +++ +D I+ + + Sbjct: 261 TTRDVIEVNLTINDIPMKIIDTAGIRETYEQIESIGIKKSFGKIKESDFIIYIYSLEEGF 320 Query: 309 --NSKKEIS-FPKNIDFIFIGTKSDLYSTYTEEYDHLISSF-----TGEGLEELINKIKS 360 KK I PK +G K DL + L ++ +G + LI+ I Sbjct: 321 NEEDKKIIQEIPKEKLITILGNKKDLIDCKNINSNELKNTILMSIKNNDGEKLLIDTI-- 378 Query: 361 ILSNKFKKLP-FSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGLDIIAENLRLASVSLGK 418 I K++ +I ++RH +LS + L + + E D+++ LR +L K Sbjct: 379 IKKCGLKQVENINIFLNERHQTNLSACLSNLNDTDEIIENKLPFDLLSIELRDGIQNLSK 438 Query: 419 ITGCVDVEQLLDIIFSKFCIGK 440 ITG E+LLD IFSKFCIGK Sbjct: 439 ITGQELTEELLDNIFSKFCIGK 460 >gi|312128799|ref|YP_003993673.1| tRNA modification gtpase trme [Caldicellulosiruptor hydrothermalis 108] gi|311778818|gb|ADQ08304.1| tRNA modification GTPase TrmE [Caldicellulosiruptor hydrothermalis 108] Length = 455 Score = 231 bits (590), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 169/459 (36%), Positives = 251/459 (54%), Gaps = 27/459 (5%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-----PFP-RKASLRYFFGLD 57 E +TI A+ST I I+R+SG S F + E + + +K P R A+L + D Sbjct: 2 EFDTIVAISTPIGTGGIGIVRISGKSAFDIAEKLIRSRKYKSIKDIPVRYAALVDVYDGD 61 Query: 58 GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 +D+ +LI F SP S+TGED E HGG+ V+ ILE K R A PGEF++RA Sbjct: 62 -EFVDEAILIKFKSPHSYTGEDIVEIQSHGGMVVLKRILEAAIK-NGARHAMPGEFTKRA 119 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NG+IDL +AE++ D+I+S+T + ++ + + + G LS + L ++ + IEA +D Sbjct: 120 FLNGRIDLSQAEAVIDIINSKTRLLQQNAAKQLKGMLSQRIEEISQLLLNLVASIEASID 179 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 FSE E V S E+L+ I I I + G+ I++G VI+G N GKSSL N Sbjct: 180 FSEHE-VDEVSHDEILSTIDGALAKIEKLIKSYETGKAIKSGIYTVIVGRPNVGKSSLLN 238 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 L K++ AIVTDIPGTTRDV+ LD+EG + ++DTAG+R+T+DIVEK G+K+T +E Sbjct: 239 RLLKEEKAIVTDIPGTTRDVIEEVLDIEGLPIILADTAGVRKTEDIVEKIGVKKTLESIE 298 Query: 298 NADLILLLKE--------------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI 343 ADL+L + E I K+ I ID ++ D+ + +E + Sbjct: 299 RADLVLFMIESSGILQEDLEIFETIKDKRFIVLVNKIDKEVKVSQDDIKRIFGKE--GIF 356 Query: 344 SSFTGEGLEELINK--IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401 S + EL+ K +L + L + ++ RH L + +L A N Sbjct: 357 ISVEHDKNLELVEKAIANEVLDRGIESLDSVLITNIRHKELLLKAKEFLLSAKENMYSVP 416 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LDI++ +++ A SL +ITG E ++D IFS FCIGK Sbjct: 417 LDILSIDIKNALESLYQITGKNVTEDMVDRIFSMFCIGK 455 >gi|157364263|ref|YP_001471030.1| tRNA modification GTPase TrmE [Thermotoga lettingae TMO] gi|205829181|sp|A8F732|MNME_THELT RecName: Full=tRNA modification GTPase mnmE gi|157314867|gb|ABV33966.1| tRNA modification GTPase TrmE [Thermotoga lettingae TMO] Length = 450 Score = 231 bits (590), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 158/452 (34%), Positives = 243/452 (53%), Gaps = 21/452 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCE-FICKKKKPFPRKASLRYFFGLDGRILDKG 64 +TI A+ST AIS+IR+SG +Q+C+ + +K K PRKA Y DG ILD+ Sbjct: 3 DTIVAISTPIGTGAISVIRMSGSKSWQICQNVLLRKTKIEPRKAFHNYVKDSDGTILDEV 62 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 ++I + SP S+TGED E HGGIAV IL+ L R A PGEF+RRAF NGKID Sbjct: 63 MVIFYKSPNSYTGEDMIEIMCHGGIAVTQSILDTLISH-GARPAEPGEFTRRAFLNGKID 121 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ +I + + +L ++G LS + + + L + IE + D+ +E Sbjct: 122 LTKAEAVKQIIEASSRKTVKLVAANLAGRLSEIVHKLRETLLGTLAKIEVEFDYPDEILT 181 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + ++ LND + +I + +Q +L I+ +G K+VI+G N GKS+L N L K++ Sbjct: 182 DPYLIEKELNDAILQIEEILKN-AQNRL--ILSSGIKVVIIGKPNVGKSTLLNTLVKEER 238 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIVTDIPGTTRD++ + L + G + DTAGIR + D VEK G++R + +LIL Sbjct: 239 AIVTDIPGTTRDLIEVPLMINGISFTLIDTAGIRHSHDEVEKIGVERAIKAADEGNLILF 298 Query: 305 LKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEE--------YDHL--ISSFTG 348 + + N KK +S K +I + K D E H+ IS+ Sbjct: 299 VLDATTPVDENDKKILSLIKEKKYIVVINKIDATDLIDREELKKILGTNTHVLTISALKK 358 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAEN 408 EG++ L +I + + ++ I + +++ Y S + +K LDI+A+ Sbjct: 359 EGIQRLEEEIIKSVKDLIQQTDGYITTQRQYEYLASCRKELSDSIEAFKKKLPLDIVAQK 418 Query: 409 LRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++ A S+ K+ G + LLD IF FC+GK Sbjct: 419 VKEALGSIDKLLGTDYTDDLLDRIFKDFCVGK 450 >gi|27904530|ref|NP_777656.1| tRNA modification GTPase TrmE [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|29839495|sp|P59569|MNME_BUCBP RecName: Full=tRNA modification GTPase mnmE gi|27903927|gb|AAO26761.1| putative tRNA modification GTPase trmE [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 459 Score = 231 bits (590), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 167/470 (35%), Positives = 258/470 (54%), Gaps = 41/470 (8%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 MN +TI + T S++ IIR+SG F+V + + R A F L G+I Sbjct: 1 MNVFNDTIVSRVTSEGKSSVGIIRISGKLAFEVSIKVLNRDYLPIRTACYLSFLDLSGKI 60 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+G+++ FP P SFTGED E HG +++ ++ + +P +RLANPGEFS RAF N Sbjct: 61 IDQGIVLWFPGPSSFTGEDVLELQGHGNPIIIDLLITTILSIPGIRLANPGEFSERAFLN 120 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GKIDL +AES++DLI++ +E R +M+ + G S I T R+ IEA ++FS+ Sbjct: 121 GKIDLAQAESISDLINATSEQAARSAMQSLQGLFSIYINNLIKDFTKFRAKIEAQINFSD 180 Query: 181 EE-DVQNFSSKEVLNDILFLKNDISSHISQGK-------LGEIIRNGYKIVILGHSNAGK 232 E + N +F++++I+ IS+ K G ++R G K+VI G N+GK Sbjct: 181 HEINADNLD--------VFIEHEINRIISRIKKIRNTAIQGSVLREGIKVVISGAPNSGK 232 Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292 SSL NAL+ + AIVT+ PGTTRDV+ ++ + G L + DTAG+R T++ +E GI+R Sbjct: 233 SSLLNALSLTNRAIVTNFPGTTRDVIYENIIINGVLFILIDTAGLRITNNPIENIGIERA 292 Query: 293 FLEVENADLILL-----------LKEINS-KKEISFPKNIDFIFIGTKSDLYSTYTEEYD 340 + E++ A+ IL LK N+ K +S I +F KSDL S + D Sbjct: 293 WNEIKLAEHILFVIDGSRSVQNQLKNYNNFIKSLSKTSCITIVF--NKSDL-SKFKINSD 349 Query: 341 H-------LISSFTGEGLEELINKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTV-RYL 390 L+SS TG G+E L + + F+ + + +RH+ LS + ++L Sbjct: 350 LRNLNNGVLVSSKTGVGIEALRQHLYFSFKSSFEVNNSEGVVSARRRHINILSMVLEKFL 409 Query: 391 EMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +K ++++A++LR LG ITG + ++LL IFS+FCIGK Sbjct: 410 SSKKDWKKINNIELLADDLRTCQDLLGGITGKITSDELLSEIFSEFCIGK 459 >gi|90194090|gb|ABD92606.1| ThdF [Actinobacillus genomosp. 2] gi|90194096|gb|ABD92609.1| ThdF [Actinobacillus arthritidis] Length = 436 Score = 231 bits (590), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 153/438 (34%), Positives = 241/438 (55%), Gaps = 29/438 (6%) Query: 18 SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77 + I+R+SGP V + + K+ PR A+ F DG +LD+G+ + F +P SFTG Sbjct: 6 GGVGILRISGPLAQTVAKEVLGKELK-PRLANYLPFKDQDGTVLDQGIALFFKAPNSFTG 64 Query: 78 EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137 ED E HGG +++ +L+ + ++ +R+A GEFS +AF N K+DL +AE++ADLI + Sbjct: 65 EDVLELQGHGGQVILDILLKRILEIKGIRIARAGEFSEQAFLNDKLDLAQAEAIADLIDA 124 Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LN 194 +E R +++ + GE S+ Q +D + ++R+++EA +DF +EE + + ++ LN Sbjct: 125 TSEQAARSALKSLQGEFSNKINQLVDSVIYLRTYVEAAIDFPDEE-IDFLADGKIEGHLN 183 Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254 DI+ N + QG I+R G K+VI G NAGKSSL NALA ++ AIVT+I GTT Sbjct: 184 DIIRQLNGVRKEAKQGA---ILREGMKVVIAGRPNAGKSSLLNALAGREAAIVTNIAGTT 240 Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314 RDVL + ++G + I DTAG+RE D VE+ GI+R + E+E AD +LL+ + + Sbjct: 241 RDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIQRAWDEIEQADHVLLMIDSTEQTAE 300 Query: 315 SF-----------PKNIDFIFIGTKSDLYSTYT--EEYDHL----ISSFTGEGLEELINK 357 +F P+NI I K DL +E D +S+ T G++ L Sbjct: 301 AFKTEWADFLAKLPQNIPVTVIRNKVDLSGEAEGLQELDGFTLIRLSAQTKVGVDLLREH 360 Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLASVS 415 +K + + + +RHL L +LE L + G +++AE LR+ + Sbjct: 361 LKKSMGYQ-SSTEGGFLARRRHLQALETAAEHLERGHIQLTQFFAG-ELLAEELRMVQNA 418 Query: 416 LGKITGCVDVEQLLDIIF 433 L +ITG + LL IF Sbjct: 419 LSEITGQFTSDDLLGNIF 436 >gi|312112752|ref|YP_003991068.1| tRNA modification GTPase TrmE [Geobacillus sp. Y4.1MC1] gi|311217853|gb|ADP76457.1| tRNA modification GTPase TrmE [Geobacillus sp. Y4.1MC1] Length = 461 Score = 231 bits (590), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 155/464 (33%), Positives = 260/464 (56%), Gaps = 31/464 (6%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFI-----CKKKKPFPRKASLRYFFGLD- 57 E +TI A+ST AI+I+RLSG + + + K+ K P ++ Y +D Sbjct: 2 EFDTIAAISTPMGEGAIAIVRLSGDEAIAIADRVFKSPSGKRLKDVPSH-TIHYGHIVDP 60 Query: 58 --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 G+ +++ ++ V +P++FT ED E + HGG+ VN +L+ L RLA PGEF++ Sbjct: 61 NSGQTVEEAMVSVMRAPKTFTREDVVEINCHGGLVSVNRVLQ-LVLTNGARLAEPGEFTK 119 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG+IDL +AE++ DLI ++T+ ++++ M G LS + + + +E + Sbjct: 120 RAFLNGRIDLSQAEAVIDLIRAKTDRAMNVALQQMEGRLSKRIRELRQAILETLAHVEVN 179 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +D+ E +D++ + ++ +++ I + + G+I+R G VI+G N GKSSL Sbjct: 180 IDYPEYDDIEEMTPHLLMEKAQYVREQIEKLLQTAQQGKILREGLATVIIGRPNVGKSSL 239 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 NAL ++ AIVTDIPGTTRDV+ +++ G +++ DTAGIRET+DIVE+ G++R++ Sbjct: 240 LNALVHENKAIVTDIPGTTRDVIEEYVNVRGVPLRLIDTAGIRETEDIVERIGVERSWQM 299 Query: 296 VENADLILLL----KEINSKKEISFP--KNIDFIFIGTKSDLYSTYTEEYDHLISSFTGE 349 ++ ADLILL+ + + ++ E F K +DFI I K+DL + D + G Sbjct: 300 LKEADLILLVLNYHEPLTAEDEKLFDMVKGMDFIVIVNKTDLPQHI--DMDRVKQLAGGR 357 Query: 350 GL-------EELINKIKSILSNKF-----KKLPFSIPSHKRHLYHLSQTVRYLEMA-SLN 396 + E+ I +++ +SN F + + S+ RH+ L Q + +E A S Sbjct: 358 PIITTSLLHEKGIEDLETAISNMFFSGAVEAGDLTYVSNSRHIALLQQAKKAVEDAISGI 417 Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E +D++ +L A LG+I G E L+D +FS+FC+GK Sbjct: 418 ESGMPVDLVQIDLTRAWELLGEIIGDTVHESLIDQLFSQFCLGK 461 >gi|302877170|ref|YP_003845803.1| tRNA modification GTPase TrmE [Clostridium cellulovorans 743B] gi|307687869|ref|ZP_07630315.1| tRNA modification GTPase TrmE [Clostridium cellulovorans 743B] gi|302580027|gb|ADL54039.1| tRNA modification GTPase TrmE [Clostridium cellulovorans 743B] Length = 459 Score = 231 bits (590), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 159/472 (33%), Positives = 268/472 (56%), Gaps = 48/472 (10%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--------KPFPRKASLRYFF 54 E +TI A++T ISIIR+SG S V + + KP+ ++RY Sbjct: 2 KEFDTIAAIATPIGEGGISIIRISGNSALSVASKLFRSANGKDLMDIKPY----TMRYGN 57 Query: 55 GLD---GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPG 111 +D I+D+ ++ +P+SFT ED+ E + HGG+ ILE + K +R+A+PG Sbjct: 58 IIDLENEEIIDEVIVSYMKAPKSFTAEDTVEINCHGGLISTKRILEVVLKQ-GVRIADPG 116 Query: 112 EFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSF 171 EF++RAF NG+IDL +AE++ D+I+++T++ + ++ G +S ++L + + Sbjct: 117 EFTKRAFLNGRIDLSQAEAVMDIITAKTDLAMKSAVAQSGGRVSREIKVLREELLAMIAH 176 Query: 172 IEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAG 231 IEA +D+ E+ D++ ++++ +ND+ L+ I + + G+I+R G VI+G N G Sbjct: 177 IEATVDYPED-DLEEMTAEKTINDLNKLQERIEYLLKTAEEGKILREGLSTVIVGKPNVG 235 Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR 291 KSSL N L ++ AIVTD+ GTTRDV+ ++++G +K+ DTAGIRETDD+VEK G+++ Sbjct: 236 KSSLLNLLTNENRAIVTDVAGTTRDVIEEYINMDGVPIKVIDTAGIRETDDLVEKIGVEK 295 Query: 292 TFLEVENADLILLLKEINSKKEI--------SFPKNIDFIFIGTKSDLYSTYTEE----- 338 + ++E ADLI+L+ ++S +E+ + K+ +I + KSDL +E Sbjct: 296 SKEKIEEADLIILM--LDSSRELDEEDLKIADYIKDKKYIVLFNKSDLKGKLKKEDIQCL 353 Query: 339 ---YDHLISSFTGEGLEELINKIKSILSN---KFKKLPFSIPSHKRHLY----HLSQTVR 388 Y +S F GEG+E L IK + + K +++ + HK LY ++S + Sbjct: 354 NSKYMIDVSVFNGEGIERLKEIIKELFFSGEIKSQEILITNSRHKDVLYRANDNISNAIE 413 Query: 389 YLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L+ S +D+ + +LR A + G+ITG E L+D IF +FC+GK Sbjct: 414 ALKNTS------AIDLASIDLRNAWSNFGEITGDTLAEDLIDKIFKEFCLGK 459 >gi|325519719|gb|EGC99039.1| tRNA modification GTPase TrmE [Burkholderia sp. TJI49] Length = 464 Score = 231 bits (590), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 154/466 (33%), Positives = 245/466 (52%), Gaps = 35/466 (7%) Query: 4 EKETIFAVSTGALPSAISIIRLS-----GPSCFQVCEFICKKKKPF-PRKASLRYFFGLD 57 + + I A++T A I ++R+S + + + +C + P PR AS F Sbjct: 5 DSDPIVAIATAAGRGGIGVVRVSFGRGGEAAALPLIDALCGQ--PLAPRHASYVPFLDAH 62 Query: 58 GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEFS 114 G LD+G+ + FP+P S+TGE E HGG V+ +L+ + + LRLA PGEF+ Sbjct: 63 GAPLDRGIALYFPAPHSYTGEHVLELQGHGGPIVMQLLLQRCLDAGRGFGLRLAEPGEFT 122 Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174 RRAF N K+DL +AE++ADLI + TE R + + G S +D + ++R +EA Sbjct: 123 RRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRQIHALVDDVINLRMLVEA 182 Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234 LDF EEE + + + + ++ ++ + + G ++R G +V+ G N GKSS Sbjct: 183 TLDFPEEE-IDFLEAADARGKLARIREQLAHVLGDARQGALLREGLSVVLAGQPNVGKSS 241 Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294 L N LA ++AIVT I GTTRD + + +EG + I DTAG+RET+D VE+ GI RT+ Sbjct: 242 LLNVLAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRETEDEVERIGIARTWS 301 Query: 295 EVENADLILLLKEINSKKEIS---------FPKNIDFIFIGTKSDLY---------STYT 336 E+E AD++L L ++S+ ++ FP + + + K+DL + Sbjct: 302 EIERADVVLHL--LDSRTGMTADDVAIAARFPDGVPVVRVLNKTDLTGVPASVEHPAAEG 359 Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL--SQTVRYLEMAS 394 + D +S+ G+G++ L ++ I + + + +RHL L +Q Sbjct: 360 DLTDVHLSAKRGDGIDLLRAELLRIAGWQAGAEGVYL-ARERHLIALRAAQAHLAHAADH 418 Query: 395 LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++ LD+ AE LRLA L ITG + LL +IFS+FCIGK Sbjct: 419 AEQRAQSLDLFAEELRLAQEQLNAITGEFTSDDLLGVIFSRFCIGK 464 >gi|312623584|ref|YP_004025197.1| tRNA modification GTPase trme [Caldicellulosiruptor kronotskyensis 2002] gi|312204051|gb|ADQ47378.1| tRNA modification GTPase TrmE [Caldicellulosiruptor kronotskyensis 2002] Length = 455 Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 170/458 (37%), Positives = 251/458 (54%), Gaps = 25/458 (5%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCE-FICKKKKPFPRKASLRYFFGLD----G 58 E +TI A+ST I I+R+SG + F + + I +K + +RY +D Sbjct: 2 EFDTIVAISTPIGTGGIGIVRISGKNAFDIAQKLIRSRKYKTVKDIPIRYAALVDVYDGD 61 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 +D+ +LI F SP S+TGED E HGG+ V+ ILE K R A PGEF++RAF Sbjct: 62 EFVDEAILIKFKSPHSYTGEDVVEIQSHGGMVVLKRILEAAIK-NGARHAMPGEFTKRAF 120 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG+IDL +AE++ D+I+S+T + ++ + + + G LS + L ++ + IEA +DF Sbjct: 121 LNGRIDLSQAEAVIDIINSKTRLLQQNAAKQLKGMLSRRIEEISQLLLNMVASIEASIDF 180 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 SE E V S E+L I I I + G++I++G VI+G N GKSSL N Sbjct: 181 SEHE-VDEVSKDEILFTIDAALEKIEKLIKSYETGKVIKSGIYTVIVGRPNVGKSSLLNR 239 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L K++ AIVTDIPGTTRDV+ LD+EG + ++DTAG+R+T+DIVEK G+K+T +E Sbjct: 240 LLKEEKAIVTDIPGTTRDVIEEVLDIEGVPIILADTAGVRKTEDIVEKIGVKKTLESIER 299 Query: 299 ADLILLLKE----INSKKEI-SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGL-- 351 ADL+L + E + EI KN FI I K D ++ D + F EG+ Sbjct: 300 ADLVLFMVESSGILQEDLEIFETIKNKRFIVIVNKIDKEVKVSQ--DDIKRIFGKEGIFI 357 Query: 352 -------EELINK--IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402 EL+ K +L+ + + ++ RH L + +L A N L Sbjct: 358 SVEHDKNLELVEKAIANEVLNQNIETHDSVLITNLRHKELLLKAKEFLVSAKENIYAVPL 417 Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 DI++ +++ A SL +ITG E ++D IFS FCIGK Sbjct: 418 DILSIDIKNALDSLYQITGKNVTEDMVDRIFSMFCIGK 455 >gi|53717720|ref|YP_106706.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei K96243] gi|53724896|ref|YP_104852.1| tRNA modification GTPase TrmE [Burkholderia mallei ATCC 23344] gi|126440482|ref|YP_001057151.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 668] gi|126454342|ref|YP_001064396.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 1106a] gi|134281363|ref|ZP_01768071.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 305] gi|167717471|ref|ZP_02400707.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei DM98] gi|167736506|ref|ZP_02409280.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 14] gi|167813583|ref|ZP_02445263.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 91] gi|167822125|ref|ZP_02453596.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 9] gi|167843730|ref|ZP_02469238.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei B7210] gi|167892208|ref|ZP_02479610.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 7894] gi|167900719|ref|ZP_02487924.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei NCTC 13177] gi|167908938|ref|ZP_02496029.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 112] gi|167916978|ref|ZP_02504069.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei BCC215] gi|217423934|ref|ZP_03455434.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 576] gi|226193161|ref|ZP_03788771.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei Pakistan 9] gi|237810287|ref|YP_002894738.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei MSHR346] gi|242317582|ref|ZP_04816598.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 1106b] gi|254184155|ref|ZP_04890746.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 1655] gi|254194641|ref|ZP_04901072.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei S13] gi|254298579|ref|ZP_04966030.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 406e] gi|81380766|sp|Q63YV9|MNME_BURPS RecName: Full=tRNA modification GTPase mnmE gi|81603688|sp|Q62EM6|MNME_BURMA RecName: Full=tRNA modification GTPase mnmE gi|205829148|sp|A3NPX5|MNME_BURP0 RecName: Full=tRNA modification GTPase mnmE gi|205829149|sp|A3N480|MNME_BURP6 RecName: Full=tRNA modification GTPase mnmE gi|205829160|sp|A1V7D3|MNME_BURMS RecName: Full=tRNA modification GTPase mnmE gi|205829167|sp|A3MS17|MNME_BURM7 RecName: Full=tRNA modification GTPase mnmE gi|205829168|sp|A2S8D8|MNME_BURM9 RecName: Full=tRNA modification GTPase mnmE gi|52208134|emb|CAH34064.1| putative tRNA modification GTPase [Burkholderia pseudomallei K96243] gi|52428319|gb|AAU48912.1| tRNA modification GTPase TrmE [Burkholderia mallei ATCC 23344] gi|126219975|gb|ABN83481.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 668] gi|126227984|gb|ABN91524.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 1106a] gi|134247030|gb|EBA47116.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 305] gi|157808553|gb|EDO85723.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 406e] gi|169651391|gb|EDS84084.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei S13] gi|184214687|gb|EDU11730.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 1655] gi|217392997|gb|EEC33019.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 576] gi|225934761|gb|EEH30738.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei Pakistan 9] gi|237505603|gb|ACQ97921.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei MSHR346] gi|242140821|gb|EES27223.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 1106b] Length = 467 Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 157/468 (33%), Positives = 242/468 (51%), Gaps = 36/468 (7%) Query: 4 EKETIFAVSTGALPSAISIIRLS-----GPSCFQVCEFICKKKKPFPRKASLRYFFGLDG 58 + + I A++T + I ++RLS + + + +C + PR AS F G Sbjct: 5 DSDPIVAIATASGRGGIGVVRLSLGRAGEAAARALSDALCGARL-MPRHASYVPFLDGAG 63 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEFSR 115 LD+G+ + FP+P S+TGE E HGG V+ +L+ + + LRLA PGEF+R Sbjct: 64 EPLDRGIALYFPAPHSYTGEHVIELQGHGGPIVLQLLLQRCLDAGRAHGLRLAEPGEFTR 123 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF N K+DL +AE++ADLI + TE R + + G S +D + +R +EA Sbjct: 124 RAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRDIHALVDDVIALRMLVEAT 183 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 LDF EEE + + + + ++ ++ + + G ++R G +V+ G N GKSSL Sbjct: 184 LDFPEEE-IDFLEAADARGKLAHIRERLAHVLGDARQGALLREGLSVVLAGQPNVGKSSL 242 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 NALA ++AIVT I GTTRD + + +EG + I DTAG+RET+D VEK GI RT+ E Sbjct: 243 LNALAGAELAIVTPIAGTTRDKVAQTIQIEGIPLHIIDTAGLRETEDEVEKIGIARTWGE 302 Query: 296 VENADLILLLKEINS-------KKEISFPKNIDFIFIGTKSDLY------------STYT 336 +E AD++L L + S FP + + + K+DL + Sbjct: 303 IERADVVLHLLDARSGLGPGDEAIAARFPDGVPVVRVLNKTDLTGAPASVTRTGGGAARA 362 Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL----SQTVRYLEM 392 + + +S+ G+G++ L ++ I + + + +RHL L + R E Sbjct: 363 DVCEVRLSAKRGDGIDLLRGELLRIAGWQAGAESVYL-ARERHLIALRAAQAHLARAAEH 421 Query: 393 ASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A N + LD+ AE LRLA L ITG + LL +IFS+FCIGK Sbjct: 422 AEQNAQ--ALDLFAEELRLAQERLNSITGEFTSDDLLGVIFSRFCIGK 467 >gi|296392434|ref|ZP_06881909.1| tRNA modification GTPase TrmE [Pseudomonas aeruginosa PAb1] Length = 426 Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 152/416 (36%), Positives = 234/416 (56%), Gaps = 26/416 (6%) Query: 46 RKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNL 105 R A F G+++D+GL + FP P SFTGED E HGG V++ +++ ++ Sbjct: 16 RHAHYGPFLDAGGQVIDEGLSLYFPGPNSFTGEDVLELQGHGGPVVLDLLVQRCLEL-GA 74 Query: 106 RLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKL 165 R A PGEFS RAF N K+DL +AE++ADLI + +E R ++ + GE S ++L Sbjct: 75 RQARPGEFSERAFLNDKLDLAQAEAIADLIEASSEQAARNALRSLQGEFSRRVHALTEQL 134 Query: 166 THIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVIL 225 +R ++EA +DF EEE + + VL + ++ ++S+ + G ++R+G +VI Sbjct: 135 ISLRIYVEAAIDFPEEE-IDFLADGHVLGLLEKVRTELSTVQREASQGALLRDGMTVVIA 193 Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVE 285 G NAGKSSL NALA ++ AIVTDI GTTRDVL + ++G + + DTAG+R+T+D VE Sbjct: 194 GRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTEDHVE 253 Query: 286 KEGIKRTFLEVENADLILLLKEINSKKEIS----FPKNID-------FIFIGTKSDLYST 334 K G++R + AD +LL+ + + + +P+ +D I K+DL + Sbjct: 254 KIGVERALKAIGEADRVLLVVDATAPEAADPFSLWPEFLDQRPEPGKVTLIRNKADLSTE 313 Query: 335 ---YTEEYD-HL---ISSFTGEGLEELINKIKSILSNKFKKLPFS-IPSHKRHLYHLSQT 386 E D H+ +S+ TG GLE L +K+ + F++ S + +RHL L Q Sbjct: 314 SIGLEESADGHVTITLSARTGAGLELLREHLKACMG--FEQTAESGFSARRRHLEALRQA 371 Query: 387 VRYLE--MASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + L+ + L G +++AE+LR A LG+ITG + LL IFS FCIGK Sbjct: 372 GQALKHGHSQLIHNGAG-ELLAEDLRQAQQHLGEITGAFTPDDLLGRIFSSFCIGK 426 >gi|225077529|ref|ZP_03720728.1| hypothetical protein NEIFLAOT_02592 [Neisseria flavescens NRL30031/H210] gi|284800154|ref|ZP_06390566.1| tRNA modification GTPase TrmE [Neisseria subflava NJ9703] gi|224951149|gb|EEG32358.1| hypothetical protein NEIFLAOT_02592 [Neisseria flavescens NRL30031/H210] gi|284795881|gb|EFC51228.1| tRNA modification GTPase TrmE [Neisseria subflava NJ9703] Length = 335 Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 126/327 (38%), Positives = 194/327 (59%), Gaps = 9/327 (2%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+ + TI A++T + +IRLSG + + + + K P PR A F G DG+ Sbjct: 1 MSATQPTIAAIATAPGRGGVGVIRLSGKNLLPLAQTLSGGKTPKPRTALYTDFLGGDGQP 60 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D G+L+ F +P SFTGED E HGG V++ +L ++ R+A PGEF++RAF N Sbjct: 61 IDNGILLYFAAPASFTGEDVIELQGHGGPVVMDMLLSRCLEL-GARMAEPGEFTKRAFLN 119 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AES+ADLI + ++ R+++ + G S + +D L +R +EA LDF E Sbjct: 120 NKLDLAQAESVADLIDASSKSAARMALRSLKGAFSQHIHELVDDLITLRMLVEATLDFPE 179 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E D+ + + + L+ + + ++ + G I+R G +V++G N GKSSL NALA Sbjct: 180 E-DIDFLEAADARGKLQALQGRLKTVLASAEQGAILREGMNVVLVGAPNVGKSSLLNALA 238 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 D+AIVTDI GTTRD + + L+G V I DTAG+RETDD+VE+ GI+R+ V AD Sbjct: 239 GDDIAIVTDIAGTTRDTVREQITLDGVPVHIIDTAGLRETDDVVEQIGIERSRKAVSEAD 298 Query: 301 LILLL----KEINSKKEI---SFPKNI 320 + L+L + +N+K + S P+ + Sbjct: 299 VALILIDPREGVNAKTQAILNSLPEGL 325 >gi|74318842|ref|YP_316582.1| tRNA modification GTPase TrmE [Thiobacillus denitrificans ATCC 25259] gi|123611091|sp|Q3SF39|MNME_THIDA RecName: Full=tRNA modification GTPase mnmE gi|74058337|gb|AAZ98777.1| tRNA modification GTPase TrmE [Thiobacillus denitrificans ATCC 25259] Length = 446 Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 153/444 (34%), Positives = 241/444 (54%), Gaps = 20/444 (4%) Query: 8 IFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLI 67 I AV+T + ++R+SGP + I + P PR + F G LD+G+ + Sbjct: 12 IAAVATAPGRGGVGVVRVSGPDVGPLAVAILGRL-PEPRHVTYCRFLDRAGAPLDEGIAL 70 Query: 68 VFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLE 127 F +P SFTGE E HGG V++ IL+ ++ RLA PGEFSRRAF NGK+DL + Sbjct: 71 YFAAPHSFTGEHVLELQGHGGPVVLDLILQRCLEL-GARLAEPGEFSRRAFLNGKLDLAQ 129 Query: 128 AESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNF 187 AE++ADLI + + R ++ +SGE S+ + +++L +R+ +EA LDF +EE + Sbjct: 130 AEAVADLIDAASAEAARSALRSLSGEFSARIDELVEQLVRLRTLVEATLDFPDEE-IDFL 188 Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247 + + + +++ SQ + G ++R G +V++G N GKSSL N LA D AIV Sbjct: 189 EQADAFGRLKAIGTSVAAVRSQARQGVLLREGLTVVLVGQPNVGKSSLLNRLAGFDAAIV 248 Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307 T+I GTTRD + + +EG + + DTAG+RET D +E+ GI R++ VE AD+ LLL + Sbjct: 249 TEIAGTTRDTVREAIQIEGVPIHVIDTAGLRETSDPIEQLGIARSWEAVEKADVALLLVD 308 Query: 308 ----INSKKEISFPKNIDFIFIGTKSDL-------YSTYTEEYDHLISSFTGEGLEELIN 356 + + + K D + + + + +T E + +S+ +GEG++ L Sbjct: 309 AAHGVGAHEAQILAKLPDVVRLTVHNKIDVAGEAPRATADEIW---LSAKSGEGVDLLRA 365 Query: 357 KIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSL 416 K+ + + + RHL L + R++E A + L++ AE LRLA +L Sbjct: 366 KLLQAAGWQAAG-EGAFMARTRHLDALDRAARHIEQAGAVARQ--LELFAEELRLAQAAL 422 Query: 417 GKITGCVDVEQLLDIIFSKFCIGK 440 +ITG + LL IF FCIGK Sbjct: 423 AEITGEFSADALLGEIFGSFCIGK 446 >gi|90194068|gb|ABD92595.1| ThdF [Histophilus somni] Length = 424 Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 148/421 (35%), Positives = 239/421 (56%), Gaps = 22/421 (5%) Query: 19 AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGE 78 + I+R+SGP QV E + K PR A+ F DG +LD+G+ + F +P SFTGE Sbjct: 7 GVGILRVSGPLAQQVAEQVLGKTLT-PRMANYLPFKDSDGSVLDQGIALYFKAPNSFTGE 65 Query: 79 DSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSE 138 D E HGG V++ +L+ + ++ +RLA PGEFS +AF N K+DL +AE++ADLI + Sbjct: 66 DVLELQGHGGQIVMDLLLKRILQIDGIRLARPGEFSEQAFLNDKLDLAQAEAIADLIEAS 125 Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILF 198 +E R +++ + GE S+ + +D + ++R+++EA +DF +EE + + ++ + Sbjct: 126 SEQAARSALKSLQGEFSNKINELVDSVIYLRTYVEAAIDFPDEE-IDFLADGKIETHLRE 184 Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 + ++ ++ K G I+R G K+VI G NAGKSSL N LA ++ AIVTDI GTTRDVL Sbjct: 185 IIAKLAKVKNEAKQGAILREGMKVVIAGRPNAGKSSLLNTLAGREAAIVTDIAGTTRDVL 244 Query: 259 TIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE----------I 308 + ++G + I DTAG+R+ D VEK GI+R + E+E AD ILL+ + + Sbjct: 245 REHIHIDGMPLHIIDTAGLRDATDEVEKIGIRRAWDEIEQADRILLILDSTENQVELDLV 304 Query: 309 NSKKEISFPKNIDFIFIGTKSDLY--STYTEEYDHL----ISSFTGEGLEELINKIKSIL 362 S+ P +I + K+DL + +E + L +S+ T +G++ L +K + Sbjct: 305 RSEFMAKLPPHIPLTIVRNKADLSGEAEVLDEQNGLTVISLSAKTQKGVDLLRQHLKQSM 364 Query: 363 SNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDIIAENLRLASVSLGKIT 420 + + +RHL L Q +L+ + L E G +++AE LR+ L +IT Sbjct: 365 GYQVCT-EGGFLARRRHLEALEQADIHLQAGLIQLTEFYAG-ELLAEELRIVQHHLSEIT 422 Query: 421 G 421 G Sbjct: 423 G 423 >gi|166714251|ref|ZP_02245458.1| tRNA modification GTPase TrmE [Xanthomonas oryzae pv. oryzicola BLS256] Length = 446 Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 150/449 (33%), Positives = 240/449 (53%), Gaps = 12/449 (2%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+ TI A+++ A + I+RLSGP Q+ + + PR A F G + Sbjct: 1 MSSSTSTIVAIASAAGTGGVGIVRLSGPQSRQIAVQLGVARLQ-PRHAHYARFRDAQGAV 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D G+ + F +P SFTGED E HG ++ ++ ++ R A GEFS RAF N Sbjct: 60 IDDGIALWFNAPHSFTGEDVVELQGHGSPVLLRQLVARCIEL-GARQARAGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GK+DL +AE++ADLI++ R + + G S LT +R +EA +DF++ Sbjct: 119 GKLDLAQAEAIADLIAAGDLRAARAARRALDGVFSRRVDAVAHTLTRLRIHVEAAIDFAD 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E + +V + + + ++ + + G +R+G V++G NAGKSSL NALA Sbjct: 179 EP-LDTLGGNQVRDGLTQARTLLAQLLRDAERGRTLRDGLHAVLIGPPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 D AIVTD+ GTTRD L + L+G+ + + DTAG+R+ D +E+EG++R E+E AD Sbjct: 238 GSDRAIVTDVAGTTRDTLHEAIQLDGFELTLVDTAGLRDGGDAIEREGMRRARAELERAD 297 Query: 301 LILLLKEINSKK--EISFPKNIDFI----FIGTKSDLYSTYT--EEYDHLISSFTGEGLE 352 L L++ + + + ID + +I K DL S + +S+ TG+GLE Sbjct: 298 LALVVLDARDPRVAREAIGDAIDAVPRQLWIHNKCDLLSDAAPLDVNAIAVSAVTGQGLE 357 Query: 353 ELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411 +L +++ + + + + + RH+ L + R+++ A L L++ AE LRL Sbjct: 358 QLHIRLRELAFGDGVESVDGEFSARTRHVEALRRAERHVDAADLELGFEQLELAAEELRL 417 Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A +LG+ITG + + LL IFS FCIGK Sbjct: 418 AHEALGEITGKISADDLLGKIFSSFCIGK 446 >gi|170288479|ref|YP_001738717.1| tRNA modification GTPase TrmE [Thermotoga sp. RQ2] gi|205829186|sp|B1L9N6|MNME_THESQ RecName: Full=tRNA modification GTPase mnmE gi|170175982|gb|ACB09034.1| tRNA modification GTPase TrmE [Thermotoga sp. RQ2] Length = 450 Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 161/455 (35%), Positives = 257/455 (56%), Gaps = 26/455 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCE-FICKKKKPFPRKASLRYFFGLDGRILDKG 64 +TI AV+T AI+I+RLSGP +++ + + + K PRKA + + +G +D+ Sbjct: 2 DTIVAVATPPGKGAIAILRLSGPDSWKIVQKHLRTRSKIVPRKA-IHGWIHENGEDVDEV 60 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 +++ + SP+S+TGED E HGG VV +L+ K R+A PGEF++RAF NGK+D Sbjct: 61 VVVFYKSPKSYTGEDMVEVMCHGGPLVVKKLLDLFLK-SGARMAEPGEFTKRAFLNGKMD 119 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L AE++ DLI +++E +LS+ + G L +L + + I +LD+ +E + Sbjct: 120 LTSAEAVRDLIEAKSETSLKLSLRNLKGGLRDFVDSLRRELIEVLAEIRVELDYPDEIET 179 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 ++ EV+ + +K ++ + + G ++ G ++VI+G N GKS+L N L +D Sbjct: 180 ---NTGEVVTRLERIKEKLTEELKKADAGILLNRGLRMVIVGKPNVGKSTLLNRLLNEDR 236 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLIL 303 AIVTDIPGTTRDV++ ++ + G L +I DTAG+R ET+D+VE+ GI+RT E+E AD++L Sbjct: 237 AIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVL 296 Query: 304 LLKEINS------KKEISFPKNIDFIFIGTKSDLYSTYTEEY--------DHL--ISSFT 347 + + +S +K + KN ++ + K D+ EE H+ IS+ Sbjct: 297 FVLDASSPLDEEDRKILERIKNKRYLVVINKVDVVEKINEEEIKNKLGTDRHMVKISALK 356 Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDII 405 GEGLE+L I F++ S+ ++ R L YLE A SL E +D+ Sbjct: 357 GEGLEKLEESIYRETQEIFERGSDSLITNLRQKQLLENVKGYLEDAIKSLKE-GMPVDMA 415 Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + +L A L ++TG E LLD IFS FC+GK Sbjct: 416 SIDLERALNLLDEVTGRSFREDLLDTIFSNFCVGK 450 >gi|121611908|ref|YP_999715.1| tRNA modification GTPase TrmE [Verminephrobacter eiseniae EF01-2] gi|205829187|sp|A1WSU0|MNME_VEREI RecName: Full=tRNA modification GTPase mnmE gi|121556548|gb|ABM60697.1| tRNA modification GTPase trmE [Verminephrobacter eiseniae EF01-2] Length = 490 Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 163/490 (33%), Positives = 246/490 (50%), Gaps = 59/490 (12%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 + I A+++ A AI I+R+SG + + + +C + PR A+ F G+ +D+GL Sbjct: 5 DPIVAIASAAGRGAIGIVRVSGNALGALAQALCGRALQ-PRMATYLAFRDARGQPIDQGL 63 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAK-------------MPNLRLANPGE 112 + FP P S+TGED E HGG V+ +L + +P LRLA PGE Sbjct: 64 ALYFPGPHSYTGEDVLELQAHGGPVVLQLLLARCLEAGAGADPATGRPCLPGLRLAQPGE 123 Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172 F+ RAF N KIDL +AE++ADLI + TE R + +SG S+ D L +R+ + Sbjct: 124 FTERAFLNDKIDLAQAEAIADLIDASTEAAARSASRSLSGAFSAGIHGLCDALIALRTLV 183 Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232 EA LDF EEE + + L+ + + + Q + G ++R+G ++VI G NAGK Sbjct: 184 EASLDFPEEE-TDFLHQADARGQLSRLRQALGAVLQQARQGALLRDGIEVVIAGQPNAGK 242 Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292 SSL NALA ++AIVT + GTTRD + + +EG ++I DTAG+R +DD VE+ GI R+ Sbjct: 243 SSLLNALAGAELAIVTPVAGTTRDKVQQTIQIEGVPLRIIDTAGLRASDDEVERIGIARS 302 Query: 293 FLEVENADLILLL---------KEINSKKEI------SFPKNIDFIFIGTKSDLYSTYTE 337 + + AD +L L K I EI P + I + K D + E Sbjct: 303 WEAMAAADAVLFLHDLARAQTPKYIADDAEIERALARKLPPGVAVIDVWNKLDCVAAPAE 362 Query: 338 ------------------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373 +S+ TG+GL+ L + + ++ +P I Sbjct: 363 LAAPTAPTESAAVPPASARPAPAPRPAVQLSARTGQGLDGLRRILLEVAG--WQSVPEGI 420 Query: 374 P-SHKRHLYHLSQTVRYLEMAS--LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLD 430 + RH+ L +LE A+ L + L+++AE LRLA +L ITG + LL Sbjct: 421 CIARARHVQALQMAAAHLEQAADQLQARGAALELLAEELRLAQNALDSITGAFTSDDLLG 480 Query: 431 IIFSKFCIGK 440 IF++FCIGK Sbjct: 481 AIFARFCIGK 490 >gi|153956503|ref|YP_001397268.1| tRNA modification GTPase TrmE [Clostridium kluyveri DSM 555] gi|189036197|sp|A5N451|MNME_CLOK5 RecName: Full=tRNA modification GTPase mnmE gi|146349361|gb|EDK35897.1| TrmE [Clostridium kluyveri DSM 555] Length = 459 Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 158/465 (33%), Positives = 272/465 (58%), Gaps = 36/465 (7%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--------KPFPRKASLRYFFG 55 E +TI A++T ISIIR+SG + + I + K KP+ S+RY F Sbjct: 3 EFDTITAIATVLGEGGISIIRISGENSLSIANSIFRGKNHRDLLDIKPY----SMRYGFI 58 Query: 56 LD---GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGE 112 ++ G ILD+ L+ P+S+T ED E + HGG+ ++EE+ K RLA PGE Sbjct: 59 IEKDTGEILDEVLVSFMKGPKSYTAEDIVEINCHGGVLATRKVMEEVIK-AGARLAEPGE 117 Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172 F++RAF NG+IDL +AE++ D+I +++ + + +++ G++S ++L I + I Sbjct: 118 FTKRAFLNGRIDLSQAEAVIDIIRAKSHISVKSAVQQSQGKISKEINLLREELLEIIAHI 177 Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232 EA +++ EE D++ +S ++ I + ++I+ +S + G+I+R G +VI+G N GK Sbjct: 178 EATVNYPEE-DLEEMTSDQIYLKINKILDEINYILSNAEEGKIVREGLSVVIVGKPNVGK 236 Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292 SSL N+L +++ AIVTDIPGTTRDV+ +++ G +KI DTAGIR+TDDIVEK G++++ Sbjct: 237 SSLLNSLIEENKAIVTDIPGTTRDVIEEYMNIGGIPIKIVDTAGIRKTDDIVEKIGVEKS 296 Query: 293 FLEVENADLILLL----KEIN--SKKEISFPKNIDFIFIGTKSDLYSTYT-EEYDHLISS 345 +++ +DL++L+ KE++ K+ I++ + +I + K+D+ + +L S Sbjct: 297 KEKIDESDLVILMLDSSKELDEEDKEIINYVNHRKYIILLNKTDIGDKIDLNDICNLNSR 356 Query: 346 F-------TGEGLEELINKIKSILSN---KFKKLPFSIPSHKRHLYHLSQTVRYLEMASL 395 F GEGL+++ N IK + K + L + HK L ++ +E Sbjct: 357 FIIKTSIKNGEGLDKIKNCIKELFFKGEIKSEDLFITNTRHKEGLIRAKESC--IEALQT 414 Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + +D+++ +++ A ++LGKITG E ++D IFS+FC+GK Sbjct: 415 LKSTLSIDLVSIDIKNAWINLGKITGDTLEEDIIDKIFSQFCLGK 459 >gi|122879374|ref|YP_203273.6| tRNA modification GTPase TrmE [Xanthomonas oryzae pv. oryzae KACC10331] gi|205829214|sp|Q5GTT5|MNME_XANOR RecName: Full=tRNA modification GTPase mnmE Length = 446 Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 149/449 (33%), Positives = 241/449 (53%), Gaps = 12/449 (2%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+ TI A+++ A + I+RLSGP Q+ + + PR A F G + Sbjct: 1 MSSSTSTIVAIASAAGTGGVGIVRLSGPQSRQIAVQLGVARLQ-PRHAHYARFRDAQGAV 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D G+ + F +P SFTGED E HG ++ ++ ++ R A GEFS RAF N Sbjct: 60 IDDGIALWFNAPHSFTGEDVVELQGHGSPVLLRQLVARCIEL-GARQARAGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GK+DL +AE++AD+I++ R + + G S LT +R +EA +DF++ Sbjct: 119 GKLDLAQAEAIADVIAAGDLRAARAARRALDGVFSRRVDAVAHTLTRLRIHVEAAIDFAD 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E + +V + + + ++ + + G +R+G V++G NAGKSSL NALA Sbjct: 179 EP-LDTLGGNQVRDGLTQARTLLAQLLRDAERGRTLRDGLHAVLIGPPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 + AIVTD+ GTTRD L + L+G+ + + DTAG+R+ D +E+EG++R E+E AD Sbjct: 238 GSERAIVTDVAGTTRDTLHEAIQLDGFELTLVDTAGLRDGGDAIEREGMRRARAELERAD 297 Query: 301 LILLLKEINSKK--EISFPKNIDFI----FIGTKSDLYSTYT--EEYDHLISSFTGEGLE 352 L L++ + + + ID + +I K DL S + +S+ TG+GLE Sbjct: 298 LALVVLDARDPQAARAAIGDAIDAVPRQLWIHNKCDLLSDAAPLDVNAIAVSAVTGQGLE 357 Query: 353 ELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411 +L +++ + L + + + + RH+ L + R+++ A L L++ AE LRL Sbjct: 358 QLHIRLRELALGDGVESVDGEFSARTRHVEALRRAERHVDAADLELGFEQLELAAEELRL 417 Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A +LG+ITG + + LL IFS FCIGK Sbjct: 418 AHEALGEITGKISADDLLGKIFSSFCIGK 446 >gi|90194076|gb|ABD92599.1| ThdF [Nicoletella semolina] Length = 441 Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 155/442 (35%), Positives = 242/442 (54%), Gaps = 34/442 (7%) Query: 19 AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGE 78 I I+R+SGP V + + K P PR A F + ILD+G+ + F +P SFTGE Sbjct: 7 GIGILRVSGPLASTVAQTVLGKC-PKPRVADYLPFRDENNDILDQGIALFFKAPHSFTGE 65 Query: 79 DSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSE 138 D E HGG +++ +L+ + K+ +R+A GEFS +AF N K+DL +AE++ADLI + Sbjct: 66 DVLELQGHGGQVILDLLLQRILKIHGVRIARAGEFSEQAFLNDKLDLAQAEAIADLIDAT 125 Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LND 195 +E R +++ + GE S Q ++ + ++R+++EA +DF +EE + + ++ LND Sbjct: 126 SEQAARSALKSLQGEFSHKINQLVEAVIYLRTYVEAAIDFPDEE-IDFLADGKIESKLND 184 Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255 I+ + + Q K G I+R G K+VI G NAGKSSL NALA ++ AIVT+I GTTR Sbjct: 185 II---AQVDAVRYQAKQGTILREGMKVVIAGKPNAGKSSLLNALAGREAAIVTNIAGTTR 241 Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 DVL + ++G + I DTAG+RE D VEK GI+R + E+E AD ILL+ + N + ++ Sbjct: 242 DVLREHIHIDGMPLHIIDTAGLREASDEVEKIGIQRAWSEIEQADHILLMIDSNQSQAVN 301 Query: 316 F-----------PKNIDFIFIGTKSDLYS--------TYTEEYDHLI---SSFTGEGLEE 353 F P N+ I K DL + T+ + + S+ T G++ Sbjct: 302 FKTEYADFLQKLPPNLPLTVIRNKVDLSGENEGIEALSQTDRANTTVIRLSAQTQLGVDL 361 Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRL 411 L +K + + + +RHL L+ +L+ L + G +++AE LRL Sbjct: 362 LREHLKKSMGYQ-SSTEGGFIARRRHLEALNLAANHLQRGHVQLTQFFAG-ELLAEELRL 419 Query: 412 ASVSLGKITGCVDVEQLLDIIF 433 +L +ITG + LL IF Sbjct: 420 VQNALSEITGQFTSDDLLGNIF 441 >gi|332521867|ref|ZP_08398316.1| tRNA modification GTPase TrmE [Lacinutrix algicola 5H-3-7-4] gi|332042539|gb|EGI78741.1| tRNA modification GTPase TrmE [Lacinutrix algicola 5H-3-7-4] Length = 464 Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 167/475 (35%), Positives = 263/475 (55%), Gaps = 46/475 (9%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEF---ICKKKKPFPRKASLRYFFG-- 55 M+ +TI A++T + A++IIRLSG + + KK K ++ + G Sbjct: 1 MSFNNDTIVALATASGAGAVAIIRLSGEAAITIANAGFKSVKKNKSLLKQKTHTIHLGHI 60 Query: 56 LDG-RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114 +DG RI+D+ L+ VF +P S+TGE+ E HG + + I++ L R+A+ GEF+ Sbjct: 61 VDGDRIIDEVLVSVFKNPNSYTGENVVEISCHGSVYIQQEIIQ-LFLRNGCRMADAGEFT 119 Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174 RAF NGK+DL +AE++ADLI+S+ E +++M+ M G SS + ++L + S +E Sbjct: 120 LRAFLNGKLDLSQAEAVADLIASDNEASHQIAMQQMRGGFSSEIAKLREELLNFASLLEL 179 Query: 175 DLDFSEEE----DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNA 230 +LDF+EE+ D F KE++N I F+ + I +G +I+NG + I+G N Sbjct: 180 ELDFAEEDVEFADRTQF--KELINRITFV---LKRLIDSFAVGNVIKNGIPVAIVGEPNV 234 Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIK 290 GKS+L NAL ++ AIV+DI GTTRD + +L +EG + DTAGIRET D+VE GIK Sbjct: 235 GKSTLLNALLNEERAIVSDIAGTTRDTIEDELVIEGIGFRFIDTAGIRETKDVVESIGIK 294 Query: 291 RTFLEVENADLILLL---KEINSKK-----EISFPKN----IDFIFIGTKSD-LYSTYTE 337 +TF ++E A +++LL +E ++ EI KN + I K D L ++ TE Sbjct: 295 KTFEKMEQAQVVILLFSAEEFQTESQRLILEIEKIKNRFPLKPLVIIANKIDTLNASETE 354 Query: 338 EYD------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391 E HL+S+ +G G+E L K+ ++ + +I ++ RH L + Sbjct: 355 ELKSKIDNIHLLSAKSGIGVEALKEKLIGFVNTGALRNNETIVTNTRHYDSLLKA----- 409 Query: 392 MASLNEKDCGL------DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +N+ GL D++A ++R A G+ITG + + LL IF+ FCIGK Sbjct: 410 FEEINKVKAGLESGLSGDLMAIDVRQALYHFGEITGAITNDDLLGNIFANFCIGK 464 >gi|54020066|ref|YP_115685.1| tRNA modification GTPase TrmE [Mycoplasma hyopneumoniae 232] gi|81823547|sp|Q601N0|MNME_MYCH2 RecName: Full=tRNA modification GTPase mnmE gi|53987239|gb|AAV27440.1| thiophene and furan oxidation protein [Mycoplasma hyopneumoniae 232] Length = 442 Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 167/447 (37%), Positives = 255/447 (57%), Gaps = 20/447 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL---DGRI 60 +TI A+++G + AISIIR+SGP+ F++ E F+ K K S+ FG D + Sbjct: 4 DTICAIASGQINQAISIIRISGPNAFKIMEKIFLGKVGK------SMEITFGWIHDDNQK 57 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+ L++ F ++F GED+ E + HGG+ N ILE + K RLANPGEFS RAF N Sbjct: 58 IDQVLVLWFAGNKNFVGEDTVEINAHGGVLNTNLILELILKTKLARLANPGEFSLRAFLN 117 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GKIDL++A+++ DLI +E ++Q + ++ G+ S+ I+K+ I IE ++D+ E Sbjct: 118 GKIDLVKAQAINDLIHAEVKVQHQAALNQFLGKSSNFIKNLIEKIEEIIGIIEVNIDYPE 177 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 +DV+ +S +L I L D I +I G K ++G N+GKSSL N L Sbjct: 178 YDDVEILTSDVLLPRINQLLADFDQLIKIANNSRLIYQGIKTCLVGAPNSGKSSLLNILI 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AI+++IPGTTRDV+ + L+G L K+ DTAGIR+T + +E+ GI++++ ++ AD Sbjct: 238 NENKAIISEIPGTTRDVVEGNFVLDGLLFKLFDTAGIRKTTEKIEQIGIEKSYESIKKAD 297 Query: 301 LILLLKEINSK-------KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEE 353 LIL + + + K K + P I ++ I KSDL E D ++ S + +E Sbjct: 298 LILHIIDASEKNRQNLDLKAKTRPDQI-YLKIYNKSDLLENQEEFKDEILISAKYQKIEN 356 Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLAS 413 L+ KIKSI + K F S + L + + L+ + E G +I +LR+A Sbjct: 357 LLEKIKSIFAFLGKNKEFVANSFQISQIELGK-LAILDAKTSLESGFGPEIAIVDLRIAW 415 Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440 L I G VD E LLD IFSKFC+GK Sbjct: 416 KELKTIFGRVDDENLLDSIFSKFCLGK 442 >gi|121598239|ref|YP_994136.1| tRNA modification GTPase TrmE [Burkholderia mallei SAVP1] gi|124384367|ref|YP_001028207.1| tRNA modification GTPase TrmE [Burkholderia mallei NCTC 10229] gi|126449818|ref|YP_001083053.1| tRNA modification GTPase TrmE [Burkholderia mallei NCTC 10247] gi|238563702|ref|ZP_00438440.2| tRNA modification GTPase TrmE [Burkholderia mallei GB8 horse 4] gi|251767367|ref|ZP_04820085.1| tRNA modification GTPase TrmE [Burkholderia mallei PRL-20] gi|254175200|ref|ZP_04881861.1| tRNA modification GTPase TrmE [Burkholderia mallei ATCC 10399] gi|254201961|ref|ZP_04908325.1| tRNA modification GTPase TrmE [Burkholderia mallei FMH] gi|254207294|ref|ZP_04913645.1| tRNA modification GTPase TrmE [Burkholderia mallei JHU] gi|254359603|ref|ZP_04975874.1| tRNA modification GTPase TrmE [Burkholderia mallei 2002721280] gi|121227049|gb|ABM49567.1| tRNA modification GTPase TrmE [Burkholderia mallei SAVP1] gi|124292387|gb|ABN01656.1| tRNA modification GTPase TrmE [Burkholderia mallei NCTC 10229] gi|126242688|gb|ABO05781.1| tRNA modification GTPase TrmE [Burkholderia mallei NCTC 10247] gi|147747855|gb|EDK54931.1| tRNA modification GTPase TrmE [Burkholderia mallei FMH] gi|147752836|gb|EDK59902.1| tRNA modification GTPase TrmE [Burkholderia mallei JHU] gi|148028817|gb|EDK86749.1| tRNA modification GTPase TrmE [Burkholderia mallei 2002721280] gi|160696245|gb|EDP86215.1| tRNA modification GTPase TrmE [Burkholderia mallei ATCC 10399] gi|238520163|gb|EEP83625.1| tRNA modification GTPase TrmE [Burkholderia mallei GB8 horse 4] gi|243063001|gb|EES45187.1| tRNA modification GTPase TrmE [Burkholderia mallei PRL-20] Length = 488 Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 157/468 (33%), Positives = 242/468 (51%), Gaps = 36/468 (7%) Query: 4 EKETIFAVSTGALPSAISIIRLS-----GPSCFQVCEFICKKKKPFPRKASLRYFFGLDG 58 + + I A++T + I ++RLS + + + +C + PR AS F G Sbjct: 26 DSDPIVAIATASGRGGIGVVRLSLGRAGEAAARALSDALCGARL-MPRHASYVPFLDGAG 84 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEFSR 115 LD+G+ + FP+P S+TGE E HGG V+ +L+ + + LRLA PGEF+R Sbjct: 85 EPLDRGIALYFPAPHSYTGEHVIELQGHGGPIVLQLLLQRCLDAGRAHGLRLAEPGEFTR 144 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF N K+DL +AE++ADLI + TE R + + G S +D + +R +EA Sbjct: 145 RAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRDIHALVDDVIALRMLVEAT 204 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 LDF EEE + + + + ++ ++ + + G ++R G +V+ G N GKSSL Sbjct: 205 LDFPEEE-IDFLEAADARGKLAHIRERLAHVLGDARQGALLREGLSVVLAGQPNVGKSSL 263 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 NALA ++AIVT I GTTRD + + +EG + I DTAG+RET+D VEK GI RT+ E Sbjct: 264 LNALAGAELAIVTPIAGTTRDKVAQTIQIEGIPLHIIDTAGLRETEDEVEKIGIARTWGE 323 Query: 296 VENADLILLLKEINS-------KKEISFPKNIDFIFIGTKSDLY------------STYT 336 +E AD++L L + S FP + + + K+DL + Sbjct: 324 IERADVVLHLLDARSGLGPGDEAIAARFPDGVPVVRVLNKTDLTGAPASVTRTGGGAARA 383 Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL----SQTVRYLEM 392 + + +S+ G+G++ L ++ I + + + +RHL L + R E Sbjct: 384 DVCEVRLSAKRGDGIDLLRGELLRIAGWQAGAESVYL-ARERHLIALRAAQAHLARAAEH 442 Query: 393 ASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A N + LD+ AE LRLA L ITG + LL +IFS+FCIGK Sbjct: 443 AEQNAQ--ALDLFAEELRLAQERLNSITGEFTSDDLLGVIFSRFCIGK 488 >gi|84626025|ref|YP_453397.1| tRNA modification GTPase TrmE [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|123520413|sp|Q2NX54|MNME_XANOM RecName: Full=tRNA modification GTPase mnmE gi|84369965|dbj|BAE71123.1| tRNA modification GTPase trmE [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 446 Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 149/449 (33%), Positives = 241/449 (53%), Gaps = 12/449 (2%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+ TI A+++ A + I+RLSGP Q+ + + PR A F G + Sbjct: 1 MSSSTSTIVAIASAAGTGGVGIVRLSGPQSRQIAVQLGVARLQ-PRHAHYARFRDAQGAV 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D G+ + F +P SFTGED E HG ++ ++ ++ R A GEFS RAF N Sbjct: 60 IDDGIALWFNAPHSFTGEDVVELQGHGSPVLLRQLVARCIEL-GARQARAGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GK+DL +AE++AD+I++ R + + G S LT +R +EA +DF++ Sbjct: 119 GKLDLAQAEAIADVIAAGDLRAARAARRALDGVFSRRVDAVAHTLTRLRIHVEAAIDFAD 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E + +V + + + ++ + + G +R+G V++G NAGKSSL NALA Sbjct: 179 EP-LDTLGGNQVRDGLTQARTLLAQLLRDAERGRTLRDGLHAVLIGPPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 + AIVTD+ GTTRD L + L+G+ + + DTAG+R+ D +E+EG++R E+E AD Sbjct: 238 GSERAIVTDVAGTTRDTLHEAIQLDGFELTLVDTAGLRDGGDAIEREGMRRARAELERAD 297 Query: 301 LILLLKEINSKK--EISFPKNIDFI----FIGTKSDLYSTYT--EEYDHLISSFTGEGLE 352 L L++ + + + ID + +I K DL S + +S+ TG+GLE Sbjct: 298 LALVVLDARDPQAARAAIGDAIDAVPRQLWIHNKCDLLSDAAPLDVNAIAVSAVTGQGLE 357 Query: 353 ELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411 +L +++ + L + + + + RH+ L + R+++ A L L++ AE LRL Sbjct: 358 QLHIRLRELALGDGVEGVDGEFSARTRHVEALRRAERHVDAADLELGFEQLELAAEELRL 417 Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A +LG+ITG + + LL IFS FCIGK Sbjct: 418 AHEALGEITGKISADDLLGKIFSSFCIGK 446 >gi|219856806|ref|YP_002473928.1| hypothetical protein CKR_3463 [Clostridium kluyveri NBRC 12016] gi|219570530|dbj|BAH08514.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 465 Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 158/465 (33%), Positives = 272/465 (58%), Gaps = 36/465 (7%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--------KPFPRKASLRYFFG 55 E +TI A++T ISIIR+SG + + I + K KP+ S+RY F Sbjct: 9 EFDTITAIATVLGEGGISIIRISGENSLSIANSIFRGKNHRDLLDIKPY----SMRYGFI 64 Query: 56 LD---GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGE 112 ++ G ILD+ L+ P+S+T ED E + HGG+ ++EE+ K RLA PGE Sbjct: 65 IEKDTGEILDEVLVSFMKGPKSYTAEDIVEINCHGGVLATRKVMEEVIK-AGARLAEPGE 123 Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172 F++RAF NG+IDL +AE++ D+I +++ + + +++ G++S ++L I + I Sbjct: 124 FTKRAFLNGRIDLSQAEAVIDIIRAKSHISVKSAVQQSQGKISKEINLLREELLEIIAHI 183 Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232 EA +++ EE D++ +S ++ I + ++I+ +S + G+I+R G +VI+G N GK Sbjct: 184 EATVNYPEE-DLEEMTSDQIYLKINKILDEINYILSNAEEGKIVREGLSVVIVGKPNVGK 242 Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292 SSL N+L +++ AIVTDIPGTTRDV+ +++ G +KI DTAGIR+TDDIVEK G++++ Sbjct: 243 SSLLNSLIEENKAIVTDIPGTTRDVIEEYMNIGGIPIKIVDTAGIRKTDDIVEKIGVEKS 302 Query: 293 FLEVENADLILLL----KEIN--SKKEISFPKNIDFIFIGTKSDLYSTYT-EEYDHLISS 345 +++ +DL++L+ KE++ K+ I++ + +I + K+D+ + +L S Sbjct: 303 KEKIDESDLVILMLDSSKELDEEDKEIINYVNHRKYIILLNKTDIGDKIDLNDICNLNSR 362 Query: 346 F-------TGEGLEELINKIKSILSN---KFKKLPFSIPSHKRHLYHLSQTVRYLEMASL 395 F GEGL+++ N IK + K + L + HK L ++ +E Sbjct: 363 FIIKTSIKNGEGLDKIKNCIKELFFKGEIKSEDLFITNTRHKEGLIRAKESC--IEALQT 420 Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + +D+++ +++ A ++LGKITG E ++D IFS+FC+GK Sbjct: 421 LKSTLSIDLVSIDIKNAWINLGKITGDTLEEDIIDKIFSQFCLGK 465 >gi|18311637|ref|NP_563571.1| tRNA modification GTPase TrmE [Clostridium perfringens str. 13] gi|110799764|ref|YP_697346.1| tRNA modification GTPase TrmE [Clostridium perfringens ATCC 13124] gi|168207742|ref|ZP_02633747.1| tRNA modification GTPase TrmE [Clostridium perfringens E str. JGS1987] gi|168211557|ref|ZP_02637182.1| tRNA modification GTPase TrmE [Clostridium perfringens B str. ATCC 3626] gi|168214843|ref|ZP_02640468.1| tRNA modification GTPase TrmE [Clostridium perfringens CPE str. F4969] gi|169343475|ref|ZP_02864475.1| tRNA modification GTPase TrmE [Clostridium perfringens C str. JGS1495] gi|182626407|ref|ZP_02954160.1| tRNA modification GTPase TrmE [Clostridium perfringens D str. JGS1721] gi|21363002|sp|Q8XH30|MNME_CLOPE RecName: Full=tRNA modification GTPase mnmE gi|123344426|sp|Q0TLZ4|MNME_CLOP1 RecName: Full=tRNA modification GTPase mnmE gi|18146321|dbj|BAB82361.1| probable thiophen / furan oxidation protein [Clostridium perfringens str. 13] gi|110674411|gb|ABG83398.1| tRNA modification GTPase TrmE [Clostridium perfringens ATCC 13124] gi|169298427|gb|EDS80516.1| tRNA modification GTPase TrmE [Clostridium perfringens C str. JGS1495] gi|170660919|gb|EDT13602.1| tRNA modification GTPase TrmE [Clostridium perfringens E str. JGS1987] gi|170710445|gb|EDT22627.1| tRNA modification GTPase TrmE [Clostridium perfringens B str. ATCC 3626] gi|170713713|gb|EDT25895.1| tRNA modification GTPase TrmE [Clostridium perfringens CPE str. F4969] gi|177908281|gb|EDT70834.1| tRNA modification GTPase TrmE [Clostridium perfringens D str. JGS1721] Length = 458 Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 159/463 (34%), Positives = 267/463 (57%), Gaps = 33/463 (7%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK--------KKKPFPRKASLRYFFG 55 E +TI A++T I+IIR+SG ++ I + KP+ ++RY Sbjct: 3 EFDTIAAIATALGEGGIAIIRVSGNKALEIVNKIFRGINGKDLLDIKPY----TMRYGHM 58 Query: 56 LD--GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEF 113 +D I+D+ ++ P SFT ED+ E + HGGI N +L+ + K RLA PGEF Sbjct: 59 IDENNEIIDEVIVSFMKGPRSFTAEDTVEINCHGGIVATNKVLQNVIK-AGARLAEPGEF 117 Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173 ++RAF NG+IDL +AE++ D+I+++TE+ + +M G LS+ + I + IE Sbjct: 118 TKRAFLNGRIDLSQAEAVMDIITAKTELSMKSAMTQSQGRLSTEINNLRKEALDILALIE 177 Query: 174 ADLDFSEEEDVQNFS-SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232 +DF+E+++ + + +V D++ L+ +++ I G++IR+G +VI+G N GK Sbjct: 178 YAVDFTEDDEEPDETIPVKVKEDVITLRGKVNNLIDTADEGKLIRDGLSMVIVGKPNVGK 237 Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292 SSL NAL + AIVTDI GTTRDV+ ++L+G V++ DTAGIRET+D+VEK G++++ Sbjct: 238 SSLLNALLNEKRAIVTDIAGTTRDVIEEYINLDGIPVRLVDTAGIRETEDVVEKIGVEKS 297 Query: 293 FLEVENADLILLL----KEIN--SKKEISFPKNIDFIFIGTKSDLYSTYTEE-YDHL--- 342 ++ ADL++L+ +E++ K+ I + K+ +I + K DL + E D+L Sbjct: 298 KEKINEADLVILMLDTSRELDEEDKEIIDYIKDRKYIVLLNKVDLDRKLSSEIVDNLENK 357 Query: 343 --ISSFTGEGLEELINKIKSILSN---KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE 397 +S+ TG G+++L +KIK + N + + + HK LY S+ + + LN Sbjct: 358 IELSAKTGFGIDDLKSKIKDLFFNGSIDAESVMVTNTRHKEALYRASENLDG-ALNGLNN 416 Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + LD+++ + A +LG+ITG E L++ IF++FC GK Sbjct: 417 NEF-LDLVSIYVTSALRALGEITGAELEEDLVNKIFAEFCCGK 458 >gi|90194112|gb|ABD92617.1| ThdF [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 434 Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 152/434 (35%), Positives = 239/434 (55%), Gaps = 29/434 (6%) Query: 18 SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77 + I+R+SGP +V + + K+ PR A+ F DG +LD+G+ + F +P SFTG Sbjct: 6 GGVGILRISGPLAQEVAKEVLGKELK-PRLANYLPFKDQDGTVLDQGIALFFKAPNSFTG 64 Query: 78 EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137 ED E HGG +++ +L+ + + +R+A GEFS +AF N K+DL +AE++ADLI + Sbjct: 65 EDVLELQGHGGQVILDILLKRILTIKGIRIARAGEFSEQAFLNDKLDLAQAEAIADLIDA 124 Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LN 194 +E R +++ + GE S+ Q +D + ++R+++EA +DF +EE + + ++ LN Sbjct: 125 TSEQAARSALKSLQGEFSNKINQLVDSVIYLRTYVEAAIDFPDEE-IDFLADGKIEGHLN 183 Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254 DI+ N + QG I+R G K+VI G NAGKSSL NALA ++ AIVT+I GTT Sbjct: 184 DIIRQLNGVRKEAKQGA---ILREGMKVVIAGRPNAGKSSLLNALAGREAAIVTNIAGTT 240 Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314 RDVL + ++G + I DTAG+RE D VEK GI+R + E+E AD +LL+ + + Sbjct: 241 RDVLREHIHIDGMPLHIIDTAGLREASDEVEKIGIQRAWDEIEQADHVLLMIDSTEQTAE 300 Query: 315 SF-----------PKNIDFIFIGTKSDLYSTYT--EEYDHL----ISSFTGEGLEELINK 357 +F P+NI I K DL +E D +S+ T G++ L Sbjct: 301 AFKTEWADFLAKLPQNIPVTVIRNKVDLSGEAEGLQELDGFTLIRLSAQTKVGVDLLREH 360 Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLASVS 415 +K + + + +RHL L +LE L + G +++AE LR+ + Sbjct: 361 LKKSMGYQ-SSTEGGFLARRRHLQALETAAEHLERGHIQLTQFFAG-ELLAEELRMVQNA 418 Query: 416 LGKITGCVDVEQLL 429 L +ITG + LL Sbjct: 419 LSEITGQFTSDDLL 432 >gi|94501615|ref|ZP_01308132.1| tRNA modification GTPase [Oceanobacter sp. RED65] gi|94426298|gb|EAT11289.1| tRNA modification GTPase [Oceanobacter sp. RED65] Length = 455 Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 160/462 (34%), Positives = 252/462 (54%), Gaps = 29/462 (6%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M +TI A++T + I+R+SG + + I + P R A F + + Sbjct: 1 MQLNTDTIAAIATPPGRGGVGIVRVSGKKAKAIAQQILGFE-PKVRFAHYCPFKDENDEV 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+GL + F P SFTGED E HGG +++ +L+ + + R A PGEFS RAF N Sbjct: 60 LDEGLALFFEGPNSFTGEDVLELQGHGGPVILDFLLQRVLAL-GARAARPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI S +E R ++ + G S + +D L ++R ++EA +DF E Sbjct: 119 DKMDLTQAEAIADLIDSASEQAARCAVRSLQGAFSQRVKELVDALINLRIYVEAAIDFPE 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + S +V D+ + + + + G I+R G +VI G NAGKSSL NALA Sbjct: 179 EE-IDFLSDGKVEADLHQVMDALKQVQQEANQGSILREGMTVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 +D AIVT I GTTRDVL + ++G + I DTAG+R+ D VE+ GI+R + E+E AD Sbjct: 238 GRDTAIVTHIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAPDEVERIGIERAWQEIEQAD 297 Query: 301 LILLLKEINSKKEISFPKNI--DFI----------FIGTKSDLYSTYT--EEYDH----- 341 +LL+ + +++ + + PK+I +F+ I K DL + +E Sbjct: 298 RVLLMVD-STETDATDPKSIWPEFVDKLPHPERITVIRNKVDLTNEKAGMDEATQNSPIV 356 Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401 +++ G+G+ EL +K+I+ I + +RH+ L+Q +L+ S ++ G Sbjct: 357 RLAAKQGDGVTELREHLKTIMGYSATSEGGFI-ARRRHIEALNQADTFLQ--SGRDQLLG 413 Query: 402 L---DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE+LR+A +L +ITG + LL IF FCIGK Sbjct: 414 AAAGELLAEDLRMAQNALNEITGEFSSDDLLGKIFGSFCIGK 455 >gi|72080548|ref|YP_287606.1| tRNA modification GTPase TrmE [Mycoplasma hyopneumoniae 7448] gi|123645152|sp|Q4A8F6|MNME_MYCH7 RecName: Full=tRNA modification GTPase mnmE gi|71913672|gb|AAZ53583.1| tRNA modification GTPase ThdF/TrmE [Mycoplasma hyopneumoniae 7448] Length = 442 Score = 230 bits (587), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 166/447 (37%), Positives = 255/447 (57%), Gaps = 20/447 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL---DGRI 60 +TI A+++G + AISIIR+SGP+ F++ E F+ K K S+ FG D + Sbjct: 4 DTICAIASGQINQAISIIRISGPNAFKIMEKIFLGKVGK------SMEITFGWIHDDNQK 57 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+ L++ F ++F GED+ E + HGG+ N ILE + K RLANPGEFS RAF N Sbjct: 58 IDQVLVLWFAGNKNFVGEDTVEINAHGGVLNTNLILELILKTKLARLANPGEFSLRAFLN 117 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GKIDL++A+++ DLI +E ++Q + ++ G+ S+ I+K+ I IE ++D+ E Sbjct: 118 GKIDLVKAQAINDLIHAEVKVQHQAALNQFLGKSSNFIKNLIEKIEEIIGIIEVNIDYPE 177 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 +DV+ +S +L I L D I +I G K ++G N+GKSSL N L Sbjct: 178 YDDVEILTSDVLLPKINQLLADFDQLIKIANNSRLIYQGIKTCLVGAPNSGKSSLLNILI 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AI+++IPGTTRDV+ + L+G L K+ DTAGIR+T + +E+ GI++++ ++ AD Sbjct: 238 NENKAIISEIPGTTRDVVEGNFVLDGLLFKLFDTAGIRKTTEKIEQIGIEKSYESIKKAD 297 Query: 301 LILLLKEINSK-------KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEE 353 LIL + + + K K + P + ++ I KSDL E D ++ S + +E Sbjct: 298 LILHIIDASEKNRQNLDLKAKARPDQV-YLKIYNKSDLLENQEEFKDEILISAKYQKIEN 356 Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLAS 413 L+ KIKSI + K F S + L + + L+ + E G +I +LR+A Sbjct: 357 LLEKIKSIFAFLGKNKEFVANSFQISQIELGK-LAILDAKTSLESGFGPEIAIVDLRIAW 415 Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440 L I G VD E LLD IFSKFC+GK Sbjct: 416 KELKTIFGRVDDENLLDSIFSKFCLGK 442 >gi|239828707|ref|YP_002951331.1| tRNA modification GTPase TrmE [Geobacillus sp. WCH70] gi|239809000|gb|ACS26065.1| tRNA modification GTPase TrmE [Geobacillus sp. WCH70] Length = 461 Score = 230 bits (587), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 156/462 (33%), Positives = 255/462 (55%), Gaps = 27/462 (5%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFI-----CKKKKPFPRKASLRYFFGLD- 57 E +TI A+ST AI+I+RLSG + + I K+ K P ++ Y +D Sbjct: 2 EFDTIAAISTPMGEGAIAIVRLSGDEAIAIADRIFQSPSGKRLKDVPSH-TIHYGHIVDP 60 Query: 58 --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 G+ +++ ++ V +P++FT ED E + HGG+ VN +L+ L RLA PGEF++ Sbjct: 61 KSGQTVEEVMVSVMRAPKTFTREDVVEINCHGGLVSVNRVLQ-LVLTNGARLAEPGEFTK 119 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG+IDL +AE++ DLI ++T+ ++++ M G LS L + + + +E + Sbjct: 120 RAFLNGRIDLSQAEAVIDLIRAKTDRAMNVALQQMEGRLSKLIRELRQTILETLAHVEVN 179 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +D+ E +DV+ + ++ +++ I + + G+I+R G VI+G N GKSSL Sbjct: 180 IDYPEYDDVEEMTPHLLMEKAQYVREQIEKLLQTAQQGKILREGLATVIIGRPNVGKSSL 239 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 NAL ++ AIVTDIPGTTRDV+ +++ G +++ DTAGIRET+D+VE+ G++R+ Sbjct: 240 LNALVHENKAIVTDIPGTTRDVIEEYVNVRGVPLRLIDTAGIRETEDVVERIGVERSRQM 299 Query: 296 VENADLILLLKEINS------KKEISFPKNIDFIFIGTKSDL--------YSTYTEEYDH 341 ++ ADLILL+ + +K K +DFI I K+DL + Sbjct: 300 LKEADLILLVLNYHEPLTEEDEKLFEMVKGMDFIVIVNKTDLPKNIDMDRVKQLADGRPI 359 Query: 342 LISSFTGE-GLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEK 398 + +S E G+E+L I + S + + S+ RH+ L Q + +E A S E Sbjct: 360 ITTSLLQEKGIEDLETAISEMFFSGSVEAGDLTYVSNSRHIALLHQAKKAIEDAISGIES 419 Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L A LG+I G E L+D +FS+FC+GK Sbjct: 420 GMPVDLVQIDLTKAWELLGEIIGDTVHESLIDQLFSQFCLGK 461 >gi|58428851|gb|AAW77888.1| thiophene and furan oxidation protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 462 Score = 230 bits (587), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 149/449 (33%), Positives = 241/449 (53%), Gaps = 12/449 (2%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+ TI A+++ A + I+RLSGP Q+ + + PR A F G + Sbjct: 17 MSSSTSTIVAIASAAGTGGVGIVRLSGPQSRQIAVQLGVARLQ-PRHAHYARFRDAQGAV 75 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D G+ + F +P SFTGED E HG ++ ++ ++ R A GEFS RAF N Sbjct: 76 IDDGIALWFNAPHSFTGEDVVELQGHGSPVLLRQLVARCIEL-GARQARAGEFSERAFLN 134 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GK+DL +AE++AD+I++ R + + G S LT +R +EA +DF++ Sbjct: 135 GKLDLAQAEAIADVIAAGDLRAARAARRALDGVFSRRVDAVAHTLTRLRIHVEAAIDFAD 194 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E + +V + + + ++ + + G +R+G V++G NAGKSSL NALA Sbjct: 195 EP-LDTLGGNQVRDGLTQARTLLAQLLRDAERGRTLRDGLHAVLIGPPNAGKSSLLNALA 253 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 + AIVTD+ GTTRD L + L+G+ + + DTAG+R+ D +E+EG++R E+E AD Sbjct: 254 GSERAIVTDVAGTTRDTLHEAIQLDGFELTLVDTAGLRDGGDAIEREGMRRARAELERAD 313 Query: 301 LILLLKEINSKK--EISFPKNIDFI----FIGTKSDLYSTYT--EEYDHLISSFTGEGLE 352 L L++ + + + ID + +I K DL S + +S+ TG+GLE Sbjct: 314 LALVVLDARDPQAARAAIGDAIDAVPRQLWIHNKCDLLSDAAPLDVNAIAVSAVTGQGLE 373 Query: 353 ELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411 +L +++ + L + + + + RH+ L + R+++ A L L++ AE LRL Sbjct: 374 QLHIRLRELALGDGVESVDGEFSARTRHVEALRRAERHVDAADLELGFEQLELAAEELRL 433 Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A +LG+ITG + + LL IFS FCIGK Sbjct: 434 AHEALGEITGKISADDLLGKIFSSFCIGK 462 >gi|148555754|ref|YP_001263336.1| tRNA modification GTPase TrmE [Sphingomonas wittichii RW1] gi|205415807|sp|A5VA82|MNME_SPHWW RecName: Full=tRNA modification GTPase mnmE gi|148500944|gb|ABQ69198.1| tRNA modification GTPase trmE [Sphingomonas wittichii RW1] Length = 440 Score = 230 bits (587), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 165/446 (36%), Positives = 254/446 (56%), Gaps = 32/446 (7%) Query: 6 ETIFAVSTGALPSAISIIRLSGP-SCFQVCEFICKKKKPFPRKASLRYFFGLDG-RILDK 63 +TIFA+S+GA P+ ++++R+SGP + + + +P R+ASLR DG +LD+ Sbjct: 16 DTIFALSSGAPPAGVAVVRISGPMAGVAIDRLTGSRPRPAARRASLRALTNPDGGALLDR 75 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 LL+ P P + TGED AE H+HGG AV +L L ++P LR A GEF+RRAFE G+I Sbjct: 76 ALLLWLPGPGTATGEDMAELHLHGGRAVTAAVLAALGRLPGLRPATAGEFTRRAFETGRI 135 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL EAE+LADL+++ETE QRR +M G LS W ++ + + +EA LDFS+EED Sbjct: 136 DLNEAEALADLLAAETEAQRRNAMLLAGGALSRALEDWQHRVLSLAARLEAQLDFSDEED 195 Query: 184 V----QNFSSKEVLNDILFLKNDISSHISQGKLG-EIIRNGYKIVILGHSNAGKSSLFNA 238 V F+++ D ++ +G+L E +R+G ++V+ G NAGKS+L NA Sbjct: 196 VAPLDPGFAAELAALDAEVVR-------WRGRLPVERLRDGVRVVLAGPPNAGKSTLLNA 248 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEVE 297 LA ++ AIVT I GTTRD++ + L G ++DTAG+ E T D VE GI R + Sbjct: 249 LAGREAAIVTPIAGTTRDLIEAPVALGGIPFLLTDTAGLHEGTGDAVEAIGIDRAGQAIA 308 Query: 298 NADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINK 357 AD++L L + S + IG ++D + + +D L+S+ +G G+++L+ Sbjct: 309 AADIVLWLGDPGCAPAGS-------VRIGAQADRRTHDSAAHDLLVSARSGTGMDDLV-- 359 Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTV---RYLEMASLNEKDCGLDIIAENLRLASV 414 ++L ++ L +P Q R E +L ++ ++AE LRLA Sbjct: 360 --ALLLDRAAGL---LPGEGEAALSARQRAALDRLGEALALAREEGDPILVAEGLRLARA 414 Query: 415 SLGKITGCVDVEQLLDIIFSKFCIGK 440 ++ +TG E +LD +F +FCIGK Sbjct: 415 AIDALTGRAGTEDMLDGLFGRFCIGK 440 >gi|290998015|ref|XP_002681576.1| mitochondrial tRNA modification GTPase [Naegleria gruberi] gi|284095201|gb|EFC48832.1| mitochondrial tRNA modification GTPase [Naegleria gruberi] Length = 609 Score = 230 bits (587), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 169/511 (33%), Positives = 274/511 (53%), Gaps = 87/511 (17%) Query: 6 ETIFAVSTGALPS-AISIIRLSGPSCFQVCEFICKKKKPFPRKASLR--YFFGLDGR--- 59 +TI+A+++G S A+S+IR+SG V + K K P K R Y+ L Sbjct: 110 DTIYAMASGFTSSCAVSVIRVSGAKAMNV---VTKMTKLNPEKIESRKAYYCSLHDPNNI 166 Query: 60 --ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEEL-AKMPNLRLANPGEFSRR 116 +DK LL+ F P SF+GED E H HG AVV+ +++ L +++ R A+PGEF++R Sbjct: 167 NIPIDKVLLLYFKGPNSFSGEDIIEIHCHGSKAVVSQLMKALGSEIVGYRPADPGEFTKR 226 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF N K+DL E E L+DL+ ++TE QR +++ ++GELS + W ++ H + + A + Sbjct: 227 AFLNRKMDLTEVEGLSDLLHAQTEHQRIQALKQINGELSHIVTNWKREMLHCVAHVTAFI 286 Query: 177 DFSEEEDVQN--FSSKEVLNDILFLKNDISSH--ISQGKLGEIIR--NGYKIVILGHSNA 230 DF ++ ++ + ++ + L +++ + IS+ +LGE +R NG + +LG NA Sbjct: 287 DFGDDNGLEESVVYRERIMPSVKKLASELEYYLEISKNRLGERLREGNGIRCALLGAPNA 346 Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD-------- 282 GKSSL N LA+KD+AIV+D GTTRDV+ + L+L+G+ V ++DTAG+R+ + Sbjct: 347 GKSSLLNILAEKDIAIVSDQAGTTRDVVEVQLNLKGWPVTVADTAGLRDQKNDISSETEL 406 Query: 283 ----IVEKEGIKRTFLEVENADLILL---------------------LKEINSK------ 311 ++E EG+KR + + AD+IL+ L E N + Sbjct: 407 GKHYLIEIEGMKRAIQKAKEADIILIVIDSSDSLASANQMLDSCLERLSENNHQILEQKK 466 Query: 312 -----KEISFPKNIDFIF-IGTKSDL-YSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364 +I N+DFI I T S T+ +S T EG+++LI +I + + N Sbjct: 467 IFAIFNKIDSRDNVDFIGPINTASGKDIPTFA------VSCITKEGVDKLIERIGTTVEN 520 Query: 365 KF---------KKLPFSIPSH------KRHLYHLSQTVRYLEMASLNEKDCGLDIIAENL 409 F K + H +RH ++T+ +L A + K +++ AE++ Sbjct: 521 IFTGNDEQFFTKDVGSQQAEHALLITRERHRISFTKTLLFLNKALEDNKQ--IELAAEHI 578 Query: 410 RLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 R A SL ++TG VD EQ+LD++F +FCIGK Sbjct: 579 RQAHKSLCEVTGDVDFEQILDVVFKEFCIGK 609 >gi|325280484|ref|YP_004253026.1| tRNA modification GTPase mnmE [Odoribacter splanchnicus DSM 20712] gi|324312293|gb|ADY32846.1| tRNA modification GTPase mnmE [Odoribacter splanchnicus DSM 20712] Length = 464 Score = 230 bits (587), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 166/470 (35%), Positives = 258/470 (54%), Gaps = 45/470 (9%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK---KKPFPRKASLRYFFGLDGRILD 62 E I AVST AI+++R+SG C + + I + KK KA+ +F GRIL+ Sbjct: 5 EVICAVSTAPGIGAIAVLRMSGTGCIALTDRIFESPSGKKLTGAKANTVHF----GRILE 60 Query: 63 KGLLI------VFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 +G L+ +F +P SFTGE+S E HG + + +L+ L RLA PGEF++R Sbjct: 61 EGCLLDEVLVTIFHAPHSFTGEESVEIACHGSLYIQQRLLQLLVNQ-GARLATPGEFTQR 119 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NGK+DL +AE++ADLI+S + R++++ M G S+ + +L HI S +E +L Sbjct: 120 AFLNGKMDLSQAEAVADLIASSSAASHRMALKQMKGGFSAELMKLRAELLHITSLLELEL 179 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQG-KLGEIIRNGYKIVILGHSNAGKSSL 235 DFSEE DV+ F+ + L I +++ + + + LG +I+NG + I+G++N GKS+L Sbjct: 180 DFSEE-DVE-FADRSELRRIAGNIDELLTRLCRSFSLGNVIKNGVPVAIVGNTNVGKSTL 237 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 NAL ++D AIV+DI GTTRDV+ ++L G + DTAGIR T D VE GI+RTF + Sbjct: 238 LNALLREDRAIVSDIAGTTRDVIEDTINLNGITFRFIDTAGIRATSDEVENIGIERTFAK 297 Query: 296 VENADLILLLKEINSKKEISFPK-----------NIDFIFIGTKSDLYSTYTEEYDHL-- 342 + A ++LLL ++N E SF + + I + K+D + + Sbjct: 298 IGQASVVLLLTDLNRGVE-SFEEYYHQVKSRLTSDAKLIIVLNKTDQVEDLLTPQETIRL 356 Query: 343 ---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA 393 IS+ TG L+ LI ++ ++ I S+ RH L +E Sbjct: 357 FTSGEEIIPISARTGANLDRLIQELTRTVNLNTLNTSDVIVSNVRHYEALRNARTAIE-- 414 Query: 394 SLNEK-DCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +NE + GL + I++++R LG+ITG + +++L IF FCIGK Sbjct: 415 RVNEGLESGLSGEFISQDIRECLHYLGEITGEITTDEVLGNIFKNFCIGK 464 >gi|78050039|ref|YP_366214.1| tRNA modification GTPase TrmE [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|123583683|sp|Q3BLZ9|MNME_XANC5 RecName: Full=tRNA modification GTPase mnmE gi|78038469|emb|CAJ26214.1| tRNA modification GTPase [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 446 Score = 230 bits (587), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 149/449 (33%), Positives = 241/449 (53%), Gaps = 12/449 (2%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+ TI A+++ A + I+RLSG Q+ + + PR A F G + Sbjct: 1 MSSSASTIVAIASAAGIGGVGIVRLSGAQSVQIAAQLGIARMQ-PRHAHYARFRDGQGAV 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D G+ + F +P SFTGED E HG ++ ++ ++ R A GEFS RAF N Sbjct: 60 IDDGIALWFNAPHSFTGEDVVELQGHGSPVLLRQLVARCIEL-GARQARAGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GK+DL +AE++ADLI++ R + + G S D LT +R +EA +DF++ Sbjct: 119 GKLDLAQAEAIADLIAAGDLRAARAARRALDGVFSRRVDAVADTLTRLRIHVEAAIDFAD 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E + ++ + + +N ++ + + G +R+G V++G NAGKSSL NALA Sbjct: 179 EP-LDTLGGNQLRDGLGQARNVLAQLLRDAERGRKLRDGLHAVLIGPPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 D AIVTD+ GTTRD L + L+G+ + + DTAG+R+ D +E+EG++R E+E AD Sbjct: 238 GSDRAIVTDVAGTTRDTLHEAIQLDGFELTLVDTAGLRDGGDAIEREGMRRARAELERAD 297 Query: 301 LILLLKEINSKKEI--SFPKNIDFI----FIGTKSDLYSTYT--EEYDHLISSFTGEGLE 352 L L++ + + + ID + +I K DL + +S+ TG+GLE Sbjct: 298 LALVVLDARDPQAARDAIGDAIDAVPRQLWIHNKCDLLGNAVSLDANAIAVSAVTGQGLE 357 Query: 353 ELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411 +L +++++ L + + + RH+ L + ++++ A L L++ AE LRL Sbjct: 358 QLHIRLRALALGDGVDSVEGEFSARTRHVQALRRAEQHVDAADLELGFEQLELAAEELRL 417 Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A +LG+ITG + + LL IFS FCIGK Sbjct: 418 AHEALGEITGKLSADDLLGKIFSSFCIGK 446 >gi|119382760|ref|YP_913816.1| tRNA modification GTPase TrmE [Paracoccus denitrificans PD1222] gi|205415788|sp|A1AXX6|MNME_PARDP RecName: Full=tRNA modification GTPase mnmE gi|119372527|gb|ABL68120.1| tRNA modification GTPase trmE [Paracoccus denitrificans PD1222] Length = 419 Score = 230 bits (587), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 162/435 (37%), Positives = 238/435 (54%), Gaps = 17/435 (3%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TIFA +T +S++RLSGP E + PR A+LR D ++D+ L Sbjct: 2 DTIFAEATPPGRGGVSVVRLSGPKAHATLESLAGPVAT-PRMAALRALRDGDD-LIDRAL 59 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 +I F SFTGE+ AE H+HG + + + + L LR A GEF++RAF NG+IDL Sbjct: 60 VIWFAEGHSFTGEEVAELHLHGAPVIASRLSQALLAR-GLRRAEAGEFTKRAFLNGRIDL 118 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 EAE LADL+S+ETE QR+L+M GEL + KL + IEA +DF++EE V Sbjct: 119 AEAEGLADLLSAETEAQRKLAMRATEGELGRKADELRSKLIRAGALIEASIDFADEE-VP 177 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 + +E L+ I +++DI ++ E +R GY++ I+G NAGKS+L N + ++++A Sbjct: 178 DEVPEEALDLIKAVRSDIQGMLASYPATERLRQGYEVAIIGPPNAGKSTLLNRIGQREIA 237 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 +V++I GTTRD+L + DL G V DTAG+RE+ D VE G+ R ADL + L Sbjct: 238 LVSEIAGTTRDILELHTDLRGLPVTFLDTAGLRESSDPVEAMGVARAVQRAAEADLRIHL 297 Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365 +E + I + +K+DL EE IS TGEG+ EL++ + L + Sbjct: 298 SVDGVPEETLV---LGDIIVRSKADL--GRGEET--AISGLTGEGVAELLDLVYDRL--R 348 Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDV 425 + + HKR L + V L + + + +AE LR A+ +L + G V Sbjct: 349 VRAADSGLVGHKRQAEALQRAVAALAI----DDSLAPEFLAEALRQAAQALAMMVGRVGA 404 Query: 426 EQLLDIIFSKFCIGK 440 E LD IFS FCIGK Sbjct: 405 EDYLDEIFSSFCIGK 419 >gi|25009497|sp|Q8PEH9|MNME_XANAC RecName: Full=tRNA modification GTPase mnmE gi|21110816|gb|AAM39200.1| thiophene and furan oxidation protein [Xanthomonas axonopodis pv. citri str. 306] Length = 448 Score = 230 bits (587), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 148/443 (33%), Positives = 242/443 (54%), Gaps = 14/443 (3%) Query: 8 IFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLI 67 I A+++ A + I+RLSGP Q+ + + PR A F G ++D G+ + Sbjct: 10 IVAIASAAGIGGVGIVRLSGPQSVQIAAHLGIARMQ-PRHAHYARFRDGHGAVIDDGIAL 68 Query: 68 VFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLE 127 F +P SFTGED E HG ++ ++ ++ R A GEFS RAF NGK+DL + Sbjct: 69 WFNAPHSFTGEDVVELQGHGSPVLLRQLVARCIEL-GARQARAGEFSERAFLNGKLDLAQ 127 Query: 128 AESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNF 187 AE++ADLI++ R + + G S + LT +R +EA +DF++E + Sbjct: 128 AEAIADLIAAGDLRAARAARRALDGVFSQRVDALAETLTRLRIHVEAAIDFADEP-LDTL 186 Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247 +V + + +N ++ + + G +R+G V++G NAGKSSL NALA D AIV Sbjct: 187 GGNQVRDGLGQARNVLAQLLRDAERGRKLRDGLHAVLIGPPNAGKSSLLNALAGSDRAIV 246 Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL-- 305 TD+ GTTRD L + L+G+ + + DTAG+R+ D +E+EG++R E+E ADL L++ Sbjct: 247 TDVAGTTRDTLHEAIQLDGFELTLVDTAGLRDGGDAIEREGMRRARAELERADLALVVLD 306 Query: 306 -KEINSKKEISFPKNIDFI----FIGTKSDLYSTYT--EEYDHLISSFTGEGLEELINKI 358 +++ + ++ + ID + +I K DL + +S+ TG+GLE+L ++ Sbjct: 307 ARDLQAARD-AIGDAIDTVPRQLWIHNKCDLLGNAASLDANAIAVSAVTGQGLEQLHIRL 365 Query: 359 KSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLG 417 +++ L + + + RH+ L + ++ + A L L++ AE LRLA +LG Sbjct: 366 RALALGDGVDSVDGEFSARTRHVQALRRAEQHADAADLELGFEQLELAAEELRLAHEALG 425 Query: 418 KITGCVDVEQLLDIIFSKFCIGK 440 +ITG + + LL IFS FCIGK Sbjct: 426 EITGKLSADDLLGKIFSSFCIGK 448 >gi|294085212|ref|YP_003551972.1| tRNA modification GTPase TrmE [Candidatus Puniceispirillum marinum IMCC1322] gi|292664787|gb|ADE39888.1| tRNA modification GTPase TrmE [Candidatus Puniceispirillum marinum IMCC1322] Length = 458 Score = 230 bits (586), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 155/446 (34%), Positives = 235/446 (52%), Gaps = 17/446 (3%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFI---CKKKKPFPRKASLRYFFGLDGRILD 62 +TIFA++T SAI+I+R+SG + C K F ++R DG+ +D Sbjct: 19 DTIFALATPPGRSAIAIVRISGKKAAYAADAFDVRCPKMGRF----AVRRLKNADGQPID 74 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 + LL+ +P S TGED E H HG AV IL+ LA++ R A PGEF+RRAF N K Sbjct: 75 EVLLLYMQAPRSPTGEDVLEIHCHGSQAVQTMILDRLAQIAGFRPALPGEFTRRAFGNDK 134 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 DL E LADLI +ET Q + + G L W + L + +EA +DF+ +E Sbjct: 135 FDLSGVEGLADLIDAETPAQLHQAWAQLDGALRKPVTAWRETLISLAGQLEALIDFA-DE 193 Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 D+ + L ++I++ ++ K GE+IR+G K+ +LG NAGKS+ NA++ + Sbjct: 194 DLPASVEAALRTSTATLISEIAAIMADNKAGEVIRDGVKVALLGSVNAGKSTALNAISGR 253 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 D I + GTTRD++ + +DL G V DTAG+R+ +E EGI+R +AD Sbjct: 254 DAVITSAEAGTTRDIVAVKMDLGGVPVTFMDTAGLRDGAGAIEAEGIRRARQAGRDADFG 313 Query: 303 LLLKEINSKK------EISFPKNIDFIFIGTKSD--LYSTYTEEYDHLISSFTGEGLEEL 354 L++ + + K EIS + + K D L + E HL S + +E L Sbjct: 314 LIILDGSDPKWPDHLAEISDLTGGQHLIVLNKCDLGLVGSVPEGALHL-SLRDHKDVEVL 372 Query: 355 INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASV 414 I I ++ + +I + RH L ++ LE ++ + ++ AE+ R+A+ Sbjct: 373 IAAITKAIAPLNQDGQSAIITRARHRDALMGAMQSLERGLTHDFNVNPELAAEDFRMAAT 432 Query: 415 SLGKITGCVDVEQLLDIIFSKFCIGK 440 +LG+ITG +DVE LL IFS FCIGK Sbjct: 433 ALGRITGKIDVEDLLGSIFSSFCIGK 458 >gi|90194078|gb|ABD92600.1| ThdF [Phocoenobacter uteri] Length = 436 Score = 230 bits (586), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 152/435 (34%), Positives = 242/435 (55%), Gaps = 25/435 (5%) Query: 19 AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGE 78 + I+R+SGP V + + K PR A+ F +DG +D+G+ + F +P SFTGE Sbjct: 7 GVGILRISGPLAETVAQEVLGKTLK-PRMANYLPFKDIDGSTIDQGIALFFKAPNSFTGE 65 Query: 79 DSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSE 138 D E HGG +++ +L+ + ++ LR+A GEFS +AF N K+DL +AE++ADLI + Sbjct: 66 DVLELQGHGGQIILDILLKRILQVKGLRIARAGEFSEQAFLNDKLDLAQAEAIADLIDAT 125 Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILF 198 +E R +++ + GE S+ Q +D + ++R+++EA +DF +EE + + ++ N + Sbjct: 126 SEQAARSALKSLQGEFSNKIHQLVDDVIYLRTYVEASIDFPDEE-IDFLADGKIENKLNQ 184 Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 + + + + K G IIR G K+VI G NAGKSSL NALA +D AIVT+I GTTRDVL Sbjct: 185 IIASLDNVRKEAKQGSIIREGMKVVIAGRPNAGKSSLLNALAGRDAAIVTNIAGTTRDVL 244 Query: 259 TIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL--------KEINS 310 + ++G + I DTAG+R+ D VE+ GI+R + E+E AD +LL+ + I + Sbjct: 245 REHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWGEIEQADHVLLMIDSTESSTENIQT 304 Query: 311 KKE---ISFPKNIDFIFIGTKSDLYSTYTEEYDHL-------ISSFTGEGLEELINKIKS 360 + + P+NI I K DL S E ++ L +S+ T G+E L +K Sbjct: 305 EWQDFLTRLPENIPVTVIRNKVDL-SGEKEGFEKLNNFDLIRLSAQTKVGVELLREHLKQ 363 Query: 361 ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDIIAENLRLASVSLGK 418 + + + +RHL L + +L L E G +++AE LR+ +L + Sbjct: 364 SMGYQ-SSTEGGFIARRRHLVALEKAAEHLANGHTQLTEFYAG-ELLAEELRMTQNALSE 421 Query: 419 ITGCVDVEQLLDIIF 433 ITG + LL IF Sbjct: 422 ITGEFTSDDLLGNIF 436 >gi|161723129|ref|YP_443727.2| tRNA modification GTPase TrmE [Burkholderia thailandensis E264] gi|167620891|ref|ZP_02389522.1| tRNA modification GTPase TrmE [Burkholderia thailandensis Bt4] gi|205829163|sp|Q2STM2|MNME_BURTA RecName: Full=tRNA modification GTPase mnmE Length = 467 Score = 230 bits (586), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 158/467 (33%), Positives = 239/467 (51%), Gaps = 34/467 (7%) Query: 4 EKETIFAVSTGALPSAISIIRLS----GPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR 59 + + I A++T + I ++R+S G + + PR AS F G Sbjct: 5 DSDPIVAIATASGRGGIGVVRISLGRAGEAAALALSDALCGARLTPRHASYVPFLDGAGE 64 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEFSRR 116 LD+G+ + FP+P S+TGE E HGG V+ +L+ + + LRLA PGEF+RR Sbjct: 65 PLDRGIALYFPAPHSYTGEHVLELQGHGGPIVLQLVLQRCLDAGRAYGLRLAEPGEFTRR 124 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF N K+DL +AE++ADLI + TE R + + G S +D + +R +EA L Sbjct: 125 AFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRDIHALVDDVIALRMLVEATL 184 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 DF EEE + + + + ++ ++ + + G ++R G +V+ G N GKSSL Sbjct: 185 DFPEEE-IDFLEAADARGKLAHIRERLAHVLGDARQGALLREGLSVVLAGQPNVGKSSLL 243 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 NALA ++AIVT I GTTRD + + +EG + I DTAG+RET+D VEK GI RT+ E+ Sbjct: 244 NALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRETEDEVEKIGIARTWGEI 303 Query: 297 ENADLILLLKEINS-------KKEISFPKNIDFIFIGTKSDL---------YSTYTEEYD 340 E AD++L L + S FP + + + K+DL + E D Sbjct: 304 ERADVVLHLLDARSGLGPDDEAIAARFPAGVPVVRVLNKTDLTEAPASVARVGSGAERAD 363 Query: 341 HL---ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL----SQTVRYLEMA 393 +S+ G+G++ L ++ I + + + +RHL L + R E A Sbjct: 364 LCEVRLSAKRGDGIDLLRGELLRIAGWQAGAESVYL-ARERHLIALRAAQAHVARAAEHA 422 Query: 394 SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 N + LD+ AE LRLA L ITG + LL +IFS+FCIGK Sbjct: 423 DQNAQ--ALDLFAEELRLAQEQLNSITGEFSSDDLLGVIFSRFCIGK 467 >gi|312136220|ref|YP_004003558.1| tRNA modification gtpase trme [Caldicellulosiruptor owensensis OL] gi|311776271|gb|ADQ05758.1| tRNA modification GTPase TrmE [Caldicellulosiruptor owensensis OL] Length = 455 Score = 230 bits (586), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 168/459 (36%), Positives = 252/459 (54%), Gaps = 27/459 (5%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-----PFP-RKASLRYFFGLD 57 E +TI A+ST I I+R+SG + V + K +K P R A+L + D Sbjct: 2 EFDTIVAISTPVGTGGIGIVRISGKDAYDVAGKLVKSRKYKSIHDIPVRYAALVDVYDGD 61 Query: 58 GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 +D+ +LI F SP S+TGED E HGGI V+ ILE K R A PGEF++RA Sbjct: 62 -EFVDEAILIKFRSPHSYTGEDIVEIQSHGGIVVLKRILEAAIK-NGARHAMPGEFTKRA 119 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NG+IDL +AE++ D+I+S+T + ++ + + + G LS + L ++ + IEA +D Sbjct: 120 FLNGRIDLSQAEAVIDIINSKTRLLQQNAAKQLKGMLSQRIEEISQLLLNLVATIEASID 179 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 FSE E V S E+L+ I I I + G+ I++G VI+G N GKSSL N Sbjct: 180 FSEHE-VDEVSHDEILSTIDGALAKIEKLIKSYETGKAIKSGIYTVIVGRPNVGKSSLLN 238 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 L K++ AIVTDIPGTTRDV+ LD+EG + ++DTAG+R T+D+VEK G++RT +E Sbjct: 239 RLLKEEKAIVTDIPGTTRDVIEEVLDIEGIPIILADTAGVRRTEDVVEKIGVERTLKSIE 298 Query: 298 NADLILLLKE--------------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI 343 ADL+L + E I K+ + ID ++ D+ + +E I Sbjct: 299 RADLVLFMVESSGILQEDLEIFETIKDKRFVVLVNKIDREVKVSQDDIKRVFGKE-GIFI 357 Query: 344 SSFTGEGLEELINK--IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401 S + L EL+ K + +LS + + + ++ RH L ++ +L A N Sbjct: 358 SVELDKNL-ELVEKAIAREVLSQNIEAIDSILITNLRHKELLLKSKEFLLSAKTNIFSVP 416 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LDI++ +++ A +L +ITG E ++D IFS FCIGK Sbjct: 417 LDILSIDIKNALENLYQITGKNVTEDMVDRIFSMFCIGK 455 >gi|222530701|ref|YP_002574583.1| tRNA modification GTPase TrmE [Caldicellulosiruptor bescii DSM 6725] gi|222457548|gb|ACM61810.1| tRNA modification GTPase TrmE [Caldicellulosiruptor bescii DSM 6725] Length = 455 Score = 230 bits (586), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 171/459 (37%), Positives = 252/459 (54%), Gaps = 27/459 (5%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-----PFP-RKASLRYFFGLD 57 E +TI A+ST I I+R+SG + F + + + + +K P R A+L + D Sbjct: 2 EFDTIVAISTPIGTGGIGIVRISGKNAFDIAQKLIRSRKYKTVKDIPTRYAALVDVYDGD 61 Query: 58 GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 +D+ +LI F SP S+TGED E HGG+ V+ ILE K R A PGEF++RA Sbjct: 62 -EFVDEAILIKFKSPNSYTGEDVVEIQSHGGMVVLKRILEAAIK-SGARHAMPGEFTKRA 119 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NG+IDL +AE++ D+I+S+T + ++ + + + G LS + L ++ + IEA +D Sbjct: 120 FLNGRIDLSQAEAVIDIINSKTRLLQQNAAKQLKGMLSQRIEEISQLLLNMVASIEASID 179 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 FSE E V S E+L I I I + G+ I++G VI+G N GKSSL N Sbjct: 180 FSEHE-VDEVSKDEILFTIDAALAKIEKLIKSYETGKAIKSGIYTVIVGRPNVGKSSLLN 238 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 L K++ AIVTDIPGTTRDV+ LD+EG + ++DTAG+R+T+DIVEK G+K+T +E Sbjct: 239 RLLKEEKAIVTDIPGTTRDVIEEVLDIEGVPIILADTAGVRKTEDIVEKIGVKKTLESIE 298 Query: 298 NADLILLLKE----INSKKEI-SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGL- 351 ADL+L + E + EI KN FI I K D ++ D + F EG+ Sbjct: 299 RADLVLFMVESSGILQEDLEIFEAIKNKRFIVIVNKIDKEVKVSQ--DDIKRIFGKEGIF 356 Query: 352 --------EELINK--IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401 EL+ K +L+ + + ++ RH L + +L A N Sbjct: 357 ISVERDKNLELVEKAIANEVLNQNIETHDSVLITNLRHKELLLKAKEFLVSAKENMYAVP 416 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LDI++ +++ A SL +ITG E ++D IFS FCIGK Sbjct: 417 LDILSIDIKNALDSLYQITGKNVTEDMVDRIFSMFCIGK 455 >gi|71893561|ref|YP_279007.1| tRNA modification GTPase TrmE [Mycoplasma hyopneumoniae J] gi|123645874|sp|Q4AAC5|MNME_MYCHJ RecName: Full=tRNA modification GTPase mnmE gi|71851688|gb|AAZ44296.1| tRNA modification GTPase ThdF/TrmE [Mycoplasma hyopneumoniae J] Length = 442 Score = 230 bits (586), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 167/447 (37%), Positives = 254/447 (56%), Gaps = 20/447 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA--SLRYFFGL---DGRI 60 +TI A+++G + AISIIR+SGP+ F++ E K F K S+ FG D + Sbjct: 4 DTICAIASGQINQAISIIRISGPNAFKIME------KIFLGKVGRSMEITFGWIHDDNQK 57 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+ L++ F ++F GED+ E + HGG+ N ILE + K RLANPGEFS RAF N Sbjct: 58 IDQVLVLWFAGNKNFVGEDTVEINAHGGVLNTNLILELILKTKLARLANPGEFSLRAFLN 117 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GKIDL++A+++ DLI +E ++Q + ++ G+ S+ I+K+ I IE ++D+ E Sbjct: 118 GKIDLVKAQAINDLIHAEVKVQHQAALNQFLGKSSNFIKNLIEKIEEIIGIIEVNIDYPE 177 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 +DV+ +S +L I L D I +I G K ++G N+GKSSL N L Sbjct: 178 YDDVEILTSDVLLPRINQLLADFDQLIKIANNSRLIYQGIKTCLVGAPNSGKSSLLNILI 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AI+++IPGTTRDV+ + L+G L K+ DTAGIR+T + +E+ GI++++ ++ AD Sbjct: 238 NENKAIISEIPGTTRDVVEGNFVLDGLLFKLFDTAGIRKTTEKIEQIGIEKSYESIKKAD 297 Query: 301 LILLLKEINSK-------KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEE 353 LIL + + + K K + P I ++ I KSDL E D ++ S + +E Sbjct: 298 LILHIIDASEKNRQNLDLKAKTRPDQI-YLKIYNKSDLLENQEEFKDEILISAKYQKIEN 356 Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLAS 413 L+ KIKSI + K F S + L + + L+ + E G +I +LR+A Sbjct: 357 LLEKIKSIFAFLGKNKEFVANSFQISQIELGK-LAILDAKTSLESGFGPEIAIVDLRIAW 415 Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440 L I G VD E LLD IFSKFC+GK Sbjct: 416 KELKTIFGRVDDENLLDSIFSKFCLGK 442 >gi|254827379|ref|ZP_05232066.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL N3-165] gi|258599757|gb|EEW13082.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL N3-165] Length = 457 Score = 230 bits (586), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 149/459 (32%), Positives = 249/459 (54%), Gaps = 25/459 (5%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRI 60 E +TI A+ST AI+IIRLSGP Q+ + I K S +G DG + Sbjct: 2 EFDTIAAISTPPGEGAIAIIRLSGPEAIQIADRIFYAKNSLSEAESHTIHYGHIKEDGEV 61 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +++ ++ V +P +FT ED E + HGGI VN +L+ L + LA PGEF++RAF N Sbjct: 62 IEEVMVTVMRAPRTFTREDVVEINAHGGIVSVNRVLQLLLR-NGANLAEPGEFTKRAFLN 120 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G+IDL +AE++ DLI ++T+ +++ M G LS L ++ + +E ++D+ E Sbjct: 121 GRIDLSQAEAVMDLIRAKTDRAMGVAIRQMDGNLSRLIRNLRQEILDALAQVEVNIDYPE 180 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 +DV+ + + +L ++ + + G+I+R G I+G N GKSSL N L Sbjct: 181 YDDVEEMTQRMLLEKTELVRASVEQLLQTASQGKILREGLATAIIGRPNVGKSSLLNQLI 240 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 +++ AIVTDI GTTRD++ +++ G +++ DTAGIRET+DIVEK G++R+ + +AD Sbjct: 241 QEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETEDIVEKIGVERSRKALADAD 300 Query: 301 LILLLKEINSKKEISFPKNI--------DFIFIGTKSDLYSTYTEEYDHLISS------- 345 ILL+ +N +E++ +++ + K+DL + + H ++ Sbjct: 301 FILLV--LNQNEELTVEDEALFEAAAGHNYVVVLNKTDLETKLDIDRVHELAGENPIVST 358 Query: 346 --FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCG 401 EGLE L IK++ + + S+ RH+ L Q + L + + Sbjct: 359 SLVNDEGLEALEEAIKTLFFAGDIDAGDATYVSNVRHIALLHQALEALNGVTTGIQLGMP 418 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +DI+ ++ A LG+ITG ++LLD +F++FC+GK Sbjct: 419 VDIVQIDMTRAWDLLGEITGDSVQDELLDQLFNQFCLGK 457 >gi|295402127|ref|ZP_06812086.1| tRNA modification GTPase TrmE [Geobacillus thermoglucosidasius C56-YS93] gi|294975810|gb|EFG51429.1| tRNA modification GTPase TrmE [Geobacillus thermoglucosidasius C56-YS93] Length = 461 Score = 230 bits (586), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 155/464 (33%), Positives = 259/464 (55%), Gaps = 31/464 (6%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFI-----CKKKKPFPRKASLRYFFGLD- 57 E +TI A+ST AI+I+RLSG + + + K+ K P ++ Y +D Sbjct: 2 EFDTIAAISTPMGEGAIAIVRLSGDEAIAIADRVFKSPSGKRLKDVPSH-TIHYGHIVDP 60 Query: 58 --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 G+ +++ ++ V +P++FT ED E + HGG+ VN +L+ L RLA PGEF++ Sbjct: 61 NSGQTVEEAMVSVMRAPKTFTREDVVEINCHGGLVSVNRVLQ-LVLTNGARLAEPGEFTK 119 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG+IDL +AE++ DLI ++T+ ++++ M G LS + + + +E + Sbjct: 120 RAFLNGRIDLSQAEAVIDLIRAKTDRAMNVALQQMEGHLSKRIRELRQAILETLAHVEVN 179 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +D+ E +D++ + ++ +++ I + + G+I+R G VI+G N GKSSL Sbjct: 180 IDYPEYDDIEEMTPHLLMEKAQYVREQIEKLLQTAQQGKILREGLATVIIGRPNVGKSSL 239 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 NAL ++ AIVTDIPGTTRDV+ +++ G +++ DTAGIRET+DIVE+ G++R+ Sbjct: 240 LNALVHENKAIVTDIPGTTRDVIEEYVNVRGVPLRLIDTAGIRETEDIVERIGVERSRQM 299 Query: 296 VENADLILLL----KEINSKKEISFP--KNIDFIFIGTKSDLYSTYTEEYDHLISSFTGE 349 ++ ADLILL+ + + ++ E F K +DFI I K+DL + D + G Sbjct: 300 LKEADLILLVLNYHEPLTAEDEKLFDMVKGMDFIVIVNKTDLPQHI--DMDRVKQLAGGR 357 Query: 350 GL-------EELINKIKSILSNKF-----KKLPFSIPSHKRHLYHLSQTVRYLEMA-SLN 396 + E+ I +++ +SN F + + S+ RH+ L Q + +E A S Sbjct: 358 PIITTSLLHEKGIEDLETAISNMFFSGAVEAGDLTYVSNSRHIALLQQAKKAVEDAISGI 417 Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E +D++ +L A LG+I G E L+D +FS+FC+GK Sbjct: 418 ESGMPVDLVQIDLTRAWELLGEIIGDTVHESLIDQLFSQFCLGK 461 >gi|90194088|gb|ABD92605.1| ThdF [Actinobacillus porcitonsillarum] Length = 436 Score = 229 bits (585), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 150/437 (34%), Positives = 245/437 (56%), Gaps = 29/437 (6%) Query: 19 AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGE 78 + I+R+SGP +V + + K+ PR A+ F DG +LD+G+ + F +P SFTGE Sbjct: 7 GVGILRVSGPLASEVAKAVVGKELK-PRLANYLPFMDTDGTVLDQGIALFFKAPNSFTGE 65 Query: 79 DSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSE 138 D E HGG +++ +L+ + ++ +R+A GEFS +AF N K+DL +AE++ADLI + Sbjct: 66 DVLELQGHGGQVILDLLLKRILEVKGVRIARAGEFSEQAFLNDKLDLAQAEAIADLIDAT 125 Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LND 195 +E R +++ + GE S+ + +D + ++R+++EA +DF +EE + + ++ LND Sbjct: 126 SEQAARSALKSLQGEFSNKVNELVDSVIYLRTYVEAAIDFPDEE-IDFLADGKIEAKLND 184 Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255 I+ +++ + K G I+R G K+VI G NAGKSSL NALA ++ AIVT+I GTTR Sbjct: 185 II---TQLANVRKEAKQGSILREGMKVVIAGKPNAGKSSLLNALAGREAAIVTNIAGTTR 241 Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 DVL + ++G + I DTAG+R+ D VE+ GI+R + E+ AD +LL+ + + ++ Sbjct: 242 DVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIQRAWDEIAQADHVLLMIDSSEQQADV 301 Query: 316 F-----------PKNIDFIFIGTKSDLY--STYTEEYDHL----ISSFTGEGLEELINKI 358 F P+NI I K DL S E+ D +S+ T G++ L + Sbjct: 302 FKTEWAEFLAKLPQNIPVTVIRNKVDLSGESEGLEQQDGFTLIRLSAQTKVGVDLLREHL 361 Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLASVSL 416 K + + + +RHL L +LE L + G +++AE LR+ +L Sbjct: 362 KQSMGYQ-SSTEGGFLARRRHLQALETAAEHLERGHVQLTQFFAG-ELLAEELRMVQNAL 419 Query: 417 GKITGCVDVEQLLDIIF 433 +ITG + LL IF Sbjct: 420 SEITGQFTSDDLLGNIF 436 >gi|167834937|ref|ZP_02461820.1| tRNA modification GTPase TrmE [Burkholderia thailandensis MSMB43] Length = 467 Score = 229 bits (585), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 153/465 (32%), Positives = 239/465 (51%), Gaps = 30/465 (6%) Query: 4 EKETIFAVSTGALPSAISIIRLS----GPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR 59 + ++I A++T + I ++R+S G + + PR AS F G Sbjct: 5 DSDSIVAIATASGRGGIGVVRISFGRAGEAAALALSEALCGARLAPRHASYVPFLDGAGE 64 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEFSRR 116 LD+G+ + FP+P S+TGE E HGG V+ +L+ + + LRLA PGEF+RR Sbjct: 65 PLDRGIALYFPAPHSYTGEHVLELQGHGGPIVLQLLLQRCLDAGRAYGLRLAEPGEFTRR 124 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF N K+DL +AE++ADLI + TE R + + G S +D + +R +EA L Sbjct: 125 AFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGVFSRDVHVLVDDVIALRMLVEATL 184 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 DF EEE + + + + ++ ++ + + G ++R G +V+ G N GKSSL Sbjct: 185 DFPEEE-IDFLEAADARGKLAHIRERLAHVLGDARQGALLREGLSVVLAGQPNVGKSSLL 243 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 NALA ++AIVT I GTTRD + + +EG + I DTAG+RET+D VEK GI RT+ E+ Sbjct: 244 NALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIVDTAGLRETEDEVEKIGIARTWGEI 303 Query: 297 ENADLILLLKEINSKK-------EISFPKNIDFIFIGTKSDLY------------STYTE 337 E AD++L L + S + FP + + + K+DL + + Sbjct: 304 ERADVVLHLLDARSGRGPDDEVIAARFPAGVPVVRVLNKTDLTDAPASVARVGGGAACAD 363 Query: 338 EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL--SQTVRYLEMASL 395 + +S+ G+G++ L ++ I + + + +RHL L +Q Sbjct: 364 VCEVRLSAKRGDGIDLLRGELLRIAGWQAGAESVYL-ARERHLIALRAAQAHLARAAGHA 422 Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++ LD+ AE LRLA L ITG + LL +IFS+FCIGK Sbjct: 423 DQNAQALDLFAEELRLAQEQLNSITGEFTSDDLLGVIFSRFCIGK 467 >gi|15674224|ref|NP_268399.1| tRNA modification GTPase TrmE [Lactococcus lactis subsp. lactis Il1403] gi|14195270|sp|Q9CDH8|MNME_LACLA RecName: Full=tRNA modification GTPase mnmE gi|12725311|gb|AAK06340.1|AE006453_4 GTP-binding protein ThdF [Lactococcus lactis subsp. lactis Il1403] gi|326407874|gb|ADZ64945.1| tRNA modification GTPase [Lactococcus lactis subsp. lactis CV56] Length = 455 Score = 229 bits (585), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 156/460 (33%), Positives = 259/460 (56%), Gaps = 27/460 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---D 57 + E +TI A+ST AI+I+RLSG ++ + + K K + AS +G + Sbjct: 3 LTQEFDTIAAISTPLGEGAIAIVRLSGTDALKIAQSVYKGKN-LTQVASHTINYGHIFEE 61 Query: 58 GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 R++D+ ++ V +P++FT ED E + HGGIAV IL+ L + RLA PGEF++RA Sbjct: 62 KRLVDEVMVSVMRAPKTFTREDIVEINTHGGIAVTQEILQLLLR-NGARLAEPGEFTKRA 120 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NG+IDL +AES+ DLI ++T+ ++++ + G LS + ++ + +E ++D Sbjct: 121 FLNGRIDLAQAESVMDLIRAKTDKAANIAVKQLDGSLSKMINNIRQEILESLAQVEVNID 180 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 + E +DV+ +S+ +L + + + +S K G+I+R G K I+G N GKSSL N Sbjct: 181 YPEYDDVETMTSQMLLEKTAHFEQLLENLLSTAKRGKILREGLKTAIIGRPNVGKSSLLN 240 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 L +++ AIVTDI GTTRDV+T ++ G +++ DTAGIRETDD+VE G++R+ + Sbjct: 241 QLLREEKAIVTDIAGTTRDVITEFANIGGVPLELVDTAGIRETDDLVEAIGVERSKKALA 300 Query: 298 NADLILLL----KEINSK--KEISFPKNIDFIFIGTKSDLY----STYTEEYDHLISSFT 347 ADL+LL+ E+ K + + KN + I + K+DL ST IS+ Sbjct: 301 EADLVLLVLDASNELTDKDLELLELSKNSNRIVLLNKTDLPEKIDSTQISGDFIRISALK 360 Query: 348 GEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL---- 402 E L + KI I + + + ++ S+ RH+ + + ++ +L E + GL Sbjct: 361 NENLNAVEEKINQIFFAGEIEAKDATVLSNARHISIVEEALK-----ALKEANSGLALGL 415 Query: 403 --DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D+I ++ LG+ITG ++L+ +FS+FC+GK Sbjct: 416 PVDLIQVDVTRCWQLLGEITGEAAPDELITQLFSQFCLGK 455 >gi|194367813|ref|YP_002030423.1| tRNA modification GTPase TrmE [Stenotrophomonas maltophilia R551-3] gi|194350617|gb|ACF53740.1| tRNA modification GTPase TrmE [Stenotrophomonas maltophilia R551-3] Length = 449 Score = 229 bits (585), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 147/447 (32%), Positives = 241/447 (53%), Gaps = 17/447 (3%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF--PRKASLRYFFGLDGRILDK 63 +TI A+++ + ++RLSGP + P PR A DG ++D Sbjct: 8 DTIVAIASAPGAGGVGLLRLSGP---RAAAIANALGAPALRPRHAHYARLRDADGEVIDD 64 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 G+++ FP+P SFTGE+ E HG ++ ++ + R A PGEFS RAF NGK+ Sbjct: 65 GIVLWFPAPNSFTGEEVVELQGHGSPVLLQQLVARCIAL-GARQARPGEFSERAFLNGKL 123 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL +AE++ADLI++ R + + G S +++L +R +EA +DF++E Sbjct: 124 DLAQAEAIADLIAAGDNRAARAARRSLDGVFSRRIDAVVEQLVLLRIHVEAAIDFADEP- 182 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 + +V + ++D++ + G +R+G V++G NAGKSSL NALA + Sbjct: 183 LDTLGGAQVRRGLKQARSDLALLRRDAERGRRLRDGLHAVLIGPPNAGKSSLLNALAGSE 242 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303 AIVTDI GTTRD L + L+G + + DTAG+R+ D +E+EG++R +E+E DL L Sbjct: 243 RAIVTDIAGTTRDTLRETIRLDGLELTLVDTAGLRDGGDAIEREGMRRAHVEIERTDLAL 302 Query: 304 LLKEIN--SKKEISFPKNIDF----IFIGTKSDLYSTYT--EEYDHL-ISSFTGEGLEEL 354 ++ + + E + + ++I KSDL + ++ D + +S+ TG GLE+L Sbjct: 303 IVLDARDPAAGEAALGDAVAAVPHKVYIHNKSDLLTALPALDDPDRVFVSAATGAGLEDL 362 Query: 355 INKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLAS 413 +++SI S +++ + RH+ + + + + A L++ AE LRLA Sbjct: 363 HARLRSIASAGAGEQVDGEFSARTRHVDAIERAQEHAQRADGELAHEHLELAAEELRLAH 422 Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440 +LG+ITG + + LL IFS FCIGK Sbjct: 423 DALGEITGQMSADDLLGRIFSSFCIGK 449 >gi|167568262|ref|ZP_02361136.1| tRNA modification GTPase TrmE [Burkholderia oklahomensis C6786] Length = 467 Score = 229 bits (585), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 158/468 (33%), Positives = 245/468 (52%), Gaps = 36/468 (7%) Query: 4 EKETIFAVSTGALPSAISIIRLS-----GPSCFQVCEFICKKKKPFPRKASLRYFFGLDG 58 + + I A++T + I ++R+S + + + +C + PR AS F G Sbjct: 5 DSDPIVAIATASGRGGIGVVRISLGRAAEAAALALSDALCGTRLA-PRHASYVPFLDGAG 63 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEFSR 115 LD+G+ + FP+P S+TGE E HGG V+ +L+ + + LRLA PGEF+R Sbjct: 64 EPLDRGIALYFPAPHSYTGEHVLELQGHGGPIVLQLVLQRCLDAGRAYGLRLAEPGEFTR 123 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF N K+DL +AE++ADLI + TE R + + G S +D + +R +EA Sbjct: 124 RAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRDIHALVDDVIALRMLVEAT 183 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 LDF EEE + + + + ++ ++ + + G ++R G +V+ G N GKSSL Sbjct: 184 LDFPEEE-IDFLEAADARGKLAHIRERLAHVLGDARQGALLREGLSVVLAGQPNVGKSSL 242 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 NALA ++AIVT I GTTRD + + +EG + I DTAG+RET+D VEK GI RT+ E Sbjct: 243 LNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRETEDEVEKIGIARTWGE 302 Query: 296 VENADLILLLKEINSK-----KEIS--FPKNIDFIFIGTKSDLYST------------YT 336 +E AD++L L + S+ + I+ FP + + + K+DL Sbjct: 303 IERADVVLHLLDARSRLGADDQAIAARFPAGVPVVRVLNKTDLTDVPASVARGGGGEGGA 362 Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL----SQTVRYLEM 392 E + +S+ G+G++ L ++ I + + + +RHL L + R E Sbjct: 363 EVCEVRLSAKRGDGIDLLRGELLRIAGWQAGAESVYL-ARERHLIALRAAQAHLARAAEH 421 Query: 393 ASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A N + LD+ AE LRLA L ITG + LL +IFS+FCIGK Sbjct: 422 ADQNAQ--ALDLFAEELRLAQEQLNSITGEFTSDDLLGVIFSRFCIGK 467 >gi|299820854|ref|ZP_07052743.1| tRNA modification GTPase TrmE [Listeria grayi DSM 20601] gi|299817875|gb|EFI85110.1| tRNA modification GTPase TrmE [Listeria grayi DSM 20601] Length = 457 Score = 229 bits (585), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 156/458 (34%), Positives = 251/458 (54%), Gaps = 23/458 (5%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRI 60 E +TI A+ST AI+IIRLSGP Q+ + I KK + S +G +G Sbjct: 2 EFDTIAAISTPPGEGAIAIIRLSGPLAIQIADRIFYAKKRLEKVDSHTIHYGHIKENGET 61 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +++ ++ V +P +FT ED E + HGGI VN +L+ L + RLA PGEF++RAF N Sbjct: 62 IEEVMVSVMRAPRTFTREDVVEINAHGGIVSVNRVLQLLLE-KGARLAEPGEFTKRAFLN 120 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G+IDL +AE++ DLI ++T+ +++ + G LS L ++ + +E ++D+ E Sbjct: 121 GRIDLSQAEAVMDLIRAKTDRAMGVALRQLDGNLSKLIRSLRQEILDALAQVEVNIDYPE 180 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 +DV+ + + +L +KN + + K G+I+R G I+G N GKSSL N L Sbjct: 181 YDDVEEMTQRMLLEKTQLVKNSVEQLLLTAKQGKILREGLATAIIGRPNVGKSSLLNQLI 240 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 +++ AIVTDI GTTRD++ +++ G +++ DTAGIRET+DIVEK G++R+ + +AD Sbjct: 241 QEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETEDIVEKIGVERSRKALADAD 300 Query: 301 LILLLKEINSKKEI------SFPKNIDFIFIGTKSDLYSTY-TEEYDHL--------ISS 345 ILL+ N I K F+ + K+DL S ++ + L S Sbjct: 301 FILLVLNQNEALTIEDEALFEAAKGHTFVVVLNKTDLPSKIDRKQLEKLANGNAIVETSL 360 Query: 346 FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL-- 402 EG+ +L I S+ + + S+ RH+ L Q + L+ A + G+ Sbjct: 361 LKDEGMRDLEEAINSLFFEGEIDAGDATYISNVRHIALLHQAIEALD-AVVEGVSVGMPV 419 Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 DI+ ++ A LG+ITG ++LLD +F++FC+GK Sbjct: 420 DIVQIDMTRAWDLLGEITGDSVQDELLDQLFNQFCLGK 457 >gi|323703263|ref|ZP_08114914.1| tRNA modification GTPase TrmE [Desulfotomaculum nigrificans DSM 574] gi|323531728|gb|EGB21616.1| tRNA modification GTPase TrmE [Desulfotomaculum nigrificans DSM 574] Length = 461 Score = 229 bits (585), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 164/460 (35%), Positives = 253/460 (55%), Gaps = 27/460 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFG----LDGR 59 +TI A++T ++I +IR+SGP + F+ KK K + K + + +G D R Sbjct: 4 DTIVAIATPLGEASIGVIRISGPDAIAIGRRVFVPKKNKDWYIKDNYKLVYGHVVDPDTR 63 Query: 60 -ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 +LD+ LL V P SFT ED E HGGI + +L+ L RLA PGEFS+RAF Sbjct: 64 EVLDEVLLSVMRGPHSFTAEDVVEISCHGGIVPLRRVLQ-LVLNQGARLAEPGEFSKRAF 122 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG++DL +AE++ D+I ++T+ +++M + G LSS + + + IEA +DF Sbjct: 123 INGRLDLAQAEAIIDIIRAKTDAGAKVAMSQLDGRLSSEIISLQTDILGLLAKIEAIIDF 182 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E+ D++ + E+ + +++ + G+I R G + VI+G N GKSSL NA Sbjct: 183 PED-DIEEATLDEIAAQCNIMLQKVNTLLDNADTGKIYREGLQTVIIGKPNVGKSSLLNA 241 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L K+ AIVTDIPGTTRD++ L+++G +KI DTAG+RETDD+VEK G+ R+ + Sbjct: 242 LLKEQRAIVTDIPGTTRDIIEEFLNIQGVPLKIIDTAGLRETDDLVEKLGVARSRQLINQ 301 Query: 299 ADLILLLKEINSK------KEISFPKNIDFIFIGTKSDLYSTYTEE---YDHLISSFTGE 349 ADL+LL+ + + K IS K+ + + K D+ + +L SFT E Sbjct: 302 ADLVLLVLDATTGITEDDLKIISLVKDKKTLVLINKIDIAANRINSDKIKRYLGDSFTLE 361 Query: 350 -------GLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-C 400 GL++L I + +L+ K I S+ RH L + ++L+ K+ Sbjct: 362 ISAKQEIGLDKLEQAILELVLAGKVTAADNVIISNTRHKQALVRAKQHLQEVQRGIKEFV 421 Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D+I+ +L+ A LG+ITG E L+D IF+ FCIGK Sbjct: 422 PADLISIDLKSAWEILGEITGNNVTEDLIDRIFADFCIGK 461 >gi|294665117|ref|ZP_06730420.1| tRNA modification GTPase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292605118|gb|EFF48466.1| tRNA modification GTPase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 446 Score = 229 bits (585), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 148/449 (32%), Positives = 240/449 (53%), Gaps = 12/449 (2%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+ TI A+++ A + I+RLSGP Q+ + + PR A F G + Sbjct: 1 MSSSTSTIVAIASAAGIGGVGIVRLSGPQSVQIAAHLGIARMR-PRHAHYARFRDGQGAV 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D G+ + F +P S TGED E HG ++ ++ + R A GEFS RAF N Sbjct: 60 IDDGIALWFNAPHSLTGEDVVELQGHGSPVLLRQLVARCIAL-GARQARAGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GK+DL +AE++ADLI++ R + + G S + LT +R +EA +DF++ Sbjct: 119 GKLDLAQAEAIADLIAAGDLRAARAARRALDGVFSQRVDALAETLTRLRIHVEAAIDFAD 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E + +V + + +N ++ + + G +R+G V++G NAGKSSL NALA Sbjct: 179 EP-LDTLGGNQVRDGLGQARNVLAQLLRDAERGRKLRDGLHAVLIGPPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 + AIVTD+ GTTRD L + L+G+ + + DTAG+R+ D +E+EG++R +E+E AD Sbjct: 238 GSERAIVTDVAGTTRDTLHEAIQLDGFELTLVDTAGLRDGGDAIEREGMRRARVELERAD 297 Query: 301 LILLLKEINSKKEI--SFPKNIDFI----FIGTKSDLYSTYT--EEYDHLISSFTGEGLE 352 L L++ + + + ID + +I K DL + +S+ TG+GLE Sbjct: 298 LALVVLDARDPQAARDAIGDAIDAVPRQLWIHNKCDLLGNAASLDANAIAVSAVTGQGLE 357 Query: 353 ELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411 +L +++++ L + + + RH+ L + ++ + A L L++ AE LRL Sbjct: 358 QLHIRLRALALGDGVDSVDGEFSARTRHVEALRRAEQHADAADLELGFEQLELAAEELRL 417 Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A +LG+ITG + + LL IFS FCIGK Sbjct: 418 AHEALGEITGKLSADDLLGKIFSSFCIGK 446 >gi|254414160|ref|ZP_05027927.1| tRNA modification GTPase TrmE [Microcoleus chthonoplastes PCC 7420] gi|196178835|gb|EDX73832.1| tRNA modification GTPase TrmE [Microcoleus chthonoplastes PCC 7420] Length = 460 Score = 229 bits (585), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 159/464 (34%), Positives = 251/464 (54%), Gaps = 37/464 (7%) Query: 4 EKETIFAVSTGALPS--AISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL--- 56 + ETI A++T +P ++ I+R+SG + ++ F ++ + + R +G Sbjct: 7 QGETIAAIATAVVPQQGSVGIVRVSGENALEIARQLFHAPGRQLW---QTHRILYGYVRH 63 Query: 57 --DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114 +I+D+ LL++ SP S+T ED EFH HGGI V +L+ ++ RLA PGEF+ Sbjct: 64 PQTQQIVDEALLLIMQSPRSYTREDVVEFHCHGGIMPVQQVLQLCLEL-GARLAQPGEFT 122 Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELS----SLYGQWIDKLTHIRS 170 RAF NG++DL +AES+ADL+ S + + ++ G+ G+L+ L +D L I Sbjct: 123 LRAFLNGRLDLTQAESIADLVGSRSPAAAQAALAGIQGKLAVPIRQLRATCLDSLAEI-- 180 Query: 171 FIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNA 230 EA +DF EED+ ++ + + +I ++ G+++R G I I+G N Sbjct: 181 --EARIDF--EEDLPPLDEAGIIAQLQQVLTNIKQILATADRGQLLRTGLNIAIVGRPNV 236 Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIK 290 GKSSL NA ++ D AIVTD+PGTTRDV+ L + G +++ DTAGIRET D VEK G++ Sbjct: 237 GKSSLLNAWSRSDRAIVTDLPGTTRDVVESQLVVGGIPIQVLDTAGIRETVDQVEKIGVE 296 Query: 291 RTFLEVENADLILLLKEINS-----KKEI-SFPKNIDFIFIGTKSDLYS----TYTEEYD 340 R+ E ADLI+L+ E + +EI + K+ I + K+DL +Y + D Sbjct: 297 RSRRAAEAADLIVLVIEATAGWSSDDQEIYTQVKHRPLILVINKTDLAPADSVSYPDSID 356 Query: 341 HLISSFT--GEGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN- 396 +I++ EG+E L I +++ + + ++R L+Q LE Sbjct: 357 RVITAAVTKNEGIEALEQGILEAVQTGTLHAADLDLAINQRQAAALTQAKIALEQVQETI 416 Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + LD +LR A +LG+ITG E +LD IFS+FCIGK Sbjct: 417 AQQLPLDFWTIDLRGAIQALGEITGEEVTESVLDRIFSRFCIGK 460 >gi|116874162|ref|YP_850943.1| tRNA modification GTPase TrmE [Listeria welshimeri serovar 6b str. SLCC5334] gi|123458786|sp|A0AMD2|MNME_LISW6 RecName: Full=tRNA modification GTPase mnmE gi|116743040|emb|CAK22164.1| tRNA modification GTPase TrmE [Listeria welshimeri serovar 6b str. SLCC5334] Length = 457 Score = 229 bits (585), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 150/459 (32%), Positives = 251/459 (54%), Gaps = 25/459 (5%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRI 60 E +TI A+ST AI+IIRLSGP Q+ + I KK S +G DG + Sbjct: 2 EFDTIAAISTPPGEGAIAIIRLSGPEAIQIADRIFYAKKNLSEAESHTIHYGHIKEDGEV 61 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +++ ++ V +P +FT ED E + HGGI VN +L+ L + LA PGEF++RAF N Sbjct: 62 IEEVMVTVMRAPRTFTREDVVEINAHGGIVSVNRVLQLLLR-NGANLAEPGEFTKRAFLN 120 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G+IDL +AE++ DLI ++T+ +++ M G LS L ++ + +E ++D+ E Sbjct: 121 GRIDLSQAEAVMDLIRAKTDRAMGVAIRQMDGNLSRLIRNLRQEILDALAQVEVNIDYPE 180 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 +DV+ + + +L ++ + + G+I+R G I+G N GKSSL N L Sbjct: 181 YDDVEEMTQRMLLEKTELVRASVEQLLQTASQGKILREGLATAIIGRPNVGKSSLLNQLI 240 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 +++ AIVTDI GTTRD++ +++ G +++ DTAGIRET+DIVEK G++R+ + +AD Sbjct: 241 QEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETEDIVEKIGVERSRKALADAD 300 Query: 301 LILLLKEINSKKEISFPKNI--------DFIFIGTKSDLYSTYT-------EEYDHLISS 345 ILL+ +N +E++ +++ + K+DL + + ++S+ Sbjct: 301 FILLV--LNQNEELTVEDEALFEAAAGHNYVVVLNKTDLETKLDINKVRELAGENPIVST 358 Query: 346 --FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCG 401 EGLE L IK++ + + S+ RH+ L Q + L + + Sbjct: 359 SLVNDEGLEALEEAIKTLFFAGDIDAGDATYVSNVRHIALLHQALEALNAVTTGIQLGMP 418 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +DI+ ++ A LG+ITG ++LLD +F++FC+GK Sbjct: 419 VDIVQIDMTRAWDLLGEITGDSVQDELLDQLFNQFCLGK 457 >gi|83655357|gb|ABC39420.1| tRNA modification GTPase TrmE [Burkholderia thailandensis E264] Length = 540 Score = 229 bits (585), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 158/467 (33%), Positives = 239/467 (51%), Gaps = 34/467 (7%) Query: 4 EKETIFAVSTGALPSAISIIRLS----GPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR 59 + + I A++T + I ++R+S G + + PR AS F G Sbjct: 78 DSDPIVAIATASGRGGIGVVRISLGRAGEAAALALSDALCGARLTPRHASYVPFLDGAGE 137 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEFSRR 116 LD+G+ + FP+P S+TGE E HGG V+ +L+ + + LRLA PGEF+RR Sbjct: 138 PLDRGIALYFPAPHSYTGEHVLELQGHGGPIVLQLVLQRCLDAGRAYGLRLAEPGEFTRR 197 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF N K+DL +AE++ADLI + TE R + + G S +D + +R +EA L Sbjct: 198 AFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRDIHALVDDVIALRMLVEATL 257 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 DF EEE + + + + ++ ++ + + G ++R G +V+ G N GKSSL Sbjct: 258 DFPEEE-IDFLEAADARGKLAHIRERLAHVLGDARQGALLREGLSVVLAGQPNVGKSSLL 316 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 NALA ++AIVT I GTTRD + + +EG + I DTAG+RET+D VEK GI RT+ E+ Sbjct: 317 NALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRETEDEVEKIGIARTWGEI 376 Query: 297 ENADLILLLKEINS-------KKEISFPKNIDFIFIGTKSDL---------YSTYTEEYD 340 E AD++L L + S FP + + + K+DL + E D Sbjct: 377 ERADVVLHLLDARSGLGPDDEAIAARFPAGVPVVRVLNKTDLTEAPASVARVGSGAERAD 436 Query: 341 HL---ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL----SQTVRYLEMA 393 +S+ G+G++ L ++ I + + + +RHL L + R E A Sbjct: 437 LCEVRLSAKRGDGIDLLRGELLRIAGWQAGAESVYL-ARERHLIALRAAQAHVARAAEHA 495 Query: 394 SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 N + LD+ AE LRLA L ITG + LL +IFS+FCIGK Sbjct: 496 DQNAQ--ALDLFAEELRLAQEQLNSITGEFSSDDLLGVIFSRFCIGK 540 >gi|50308583|ref|XP_454294.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49643429|emb|CAG99381.1| KLLA0E07657p [Kluyveromyces lactis] Length = 501 Score = 229 bits (584), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 159/474 (33%), Positives = 269/474 (56%), Gaps = 50/474 (10%) Query: 7 TIFAVSTGA-LPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRIL-DKG 64 T++A+ST + SAI+IIR+SG + + + KK RK +R + L D+ Sbjct: 38 TVYALSTPSNQHSAIAIIRISGTHSKYILKKLSPKKPLRQRKPMIRSLYDPKASTLIDEA 97 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN----LRLANPGEFSRRAFEN 120 L++ FP P +FTGED E H+HGG A++ L + + + +R+A PGEFSRRAF+N Sbjct: 98 LVLYFPQPRTFTGEDLVELHLHGGKAIIKAALNSIQGLRDSERDIRMAMPGEFSRRAFQN 157 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GK+DLL+ ES+ ++I S+TE+QR ++ G + ++ +W ++ + + A +DF E Sbjct: 158 GKMDLLKLESINNMIHSDTELQRLSALHG--NQTVDIFHEWRQEIIEQIAKLTAIIDFGE 215 Query: 181 EEDVQNFSSKEVLN----DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 + + ++ S ++N +L L ++ + + ++ +G K+ +LG N+GKSSL Sbjct: 216 DIETEDIDS--IVNGANDKLLQLYKKVTRFMVKLDRMAVLNDGIKLTLLGEPNSGKSSLV 273 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLE 295 N +++ DVAIV+DIPGTTRD + + +D+ G+ ++DTAGIR+ T D +E +GI R+ + Sbjct: 274 NEISQDDVAIVSDIPGTTRDSIDVMMDINGFKCILTDTAGIRQGTSDSIEIKGIDRSKKK 333 Query: 296 VENADLILLLKEIN----SKKEISFPK----NIDFIFIGTKSDLYST-----YTEEYD-- 340 +DL++L+ +++ SK F K + I + KSDL + E++D Sbjct: 334 SLQSDLVVLVIDVSNPNISKHFEEFIKDNLSDKPLIVVLNKSDLATETQLKYLIEKFDAE 393 Query: 341 ------HLISSFTGEGLEELINKIKSILSNKFKKL-------PFSIPSHKRHLYHLSQTV 387 H +S T GLE L+ L+ F+++ P ++ + + + LS + Sbjct: 394 FKALKIHTVSCLTKIGLEPLVKT----LTLSFRRISATENEDPVTVSNRVKEI--LSTDI 447 Query: 388 RYLEMASLNEKDCGLDIIAENLRLASVSLGKITG-CVDVEQLLDIIFSKFCIGK 440 + K+ + I E+LR+AS +GKITG VD+E++LD++FSKFCIGK Sbjct: 448 LFGLDQFFQHKNDDILIACESLRIASDGIGKITGDNVDLEEVLDVVFSKFCIGK 501 >gi|167560998|ref|ZP_02353914.1| tRNA modification GTPase TrmE [Burkholderia oklahomensis EO147] Length = 467 Score = 229 bits (584), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 158/468 (33%), Positives = 245/468 (52%), Gaps = 36/468 (7%) Query: 4 EKETIFAVSTGALPSAISIIRLS-----GPSCFQVCEFICKKKKPFPRKASLRYFFGLDG 58 + + I A++T + I ++R+S + + + +C + PR AS F G Sbjct: 5 DSDPIVAIATASGRGGIGVVRISLGRAAEAAALALSDALCGTRLA-PRHASYVPFLDGAG 63 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEFSR 115 LD+G+ + FP+P S+TGE E HGG V+ +L+ + + LRLA PGEF+R Sbjct: 64 EPLDRGIALYFPAPHSYTGEHVLELQGHGGPIVLQLVLQRCLDAGRAYGLRLAEPGEFTR 123 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF N K+DL +AE++ADLI + TE R + + G S +D + +R +EA Sbjct: 124 RAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRDIHTLVDDVIALRMLVEAT 183 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 LDF EEE + + + + ++ ++ + + G ++R G +V+ G N GKSSL Sbjct: 184 LDFPEEE-IDFLEAADARGKLAHIRERLAHVLGDARQGALLREGLSVVLAGQPNVGKSSL 242 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 NALA ++AIVT I GTTRD + + +EG + I DTAG+RET+D VEK GI RT+ E Sbjct: 243 LNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRETEDEVEKIGIARTWGE 302 Query: 296 VENADLILLLKEINSK-----KEIS--FPKNIDFIFIGTKSDLYST------------YT 336 +E AD++L L + S+ + I+ FP + + + K+DL Sbjct: 303 IERADVVLHLLDARSRLGADDQAIAARFPAGVPVVRVLNKTDLTDVPASVARGGGEEGGA 362 Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL----SQTVRYLEM 392 E + +S+ G+G++ L ++ I + + + +RHL L + R E Sbjct: 363 EVCEVRLSAKRGDGIDLLRGELLRIAGWQAGAESVYL-ARERHLIALRAAQAHLARAAEH 421 Query: 393 ASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A N + LD+ AE LRLA L ITG + LL +IFS+FCIGK Sbjct: 422 ADQNAQ--ALDLFAEELRLAQEQLNSITGEFTSDDLLGVIFSRFCIGK 467 >gi|123965453|ref|YP_001010534.1| tRNA modification GTPase TrmE [Prochlorococcus marinus str. MIT 9515] gi|166234807|sp|A2BUG6|MNME_PROM5 RecName: Full=tRNA modification GTPase mnmE gi|123199819|gb|ABM71427.1| putative thiophen / furan oxidation protein [Prochlorococcus marinus str. MIT 9515] Length = 461 Score = 229 bits (584), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 162/456 (35%), Positives = 250/456 (54%), Gaps = 36/456 (7%) Query: 10 AVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG-----LDGRILDKG 64 A+S G I++IR++G C+ I + K + + S R F G L+ + +D+ Sbjct: 17 AISLG--KGGIAVIRVTGEEAINSCKNIVETKSKYAWE-SHRVFHGYVKDNLENKYIDEI 73 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN-LRLANPGEFSRRAFENGKI 123 L+ V SP SFTGED E H HGG+ VVN +++ L N +R+ANPGEFS+RAF NGKI Sbjct: 74 LISVMHSPNSFTGEDVVELHCHGGVIVVNKVMDTLLSNNNKVRIANPGEFSQRAFLNGKI 133 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL +AES+ LI+++ ++ G+ GE+ + L S IEA +DF EED Sbjct: 134 DLTQAESINQLINAKNLKSAEIAFNGVKGEIKKKIDVIKNDLIEQLSEIEARVDF--EED 191 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 +F+ + I +K I I K G I NG I ++G +N GKSSL N L+KK+ Sbjct: 192 FSDFNYHDFSRSIKNIKEKIEILIENTKRGASIHNGISIALIGKTNVGKSSLLNLLSKKE 251 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303 AIVT+IPGTTRD++ ++L ++ +K+ DTAGIR+TD+ +E GI++TF ++ +D I+ Sbjct: 252 KAIVTNIPGTTRDMIEVNLTIKDIPIKLVDTAGIRDTDEYIENIGIEKTFEMIQKSDYII 311 Query: 304 LL-----------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH------LISSF 346 L +EI SK P+ +G K DL + + L+S Sbjct: 312 YLYSLEDGFNKDDEEIISK----IPREKLITILGNKKDLIDSKKNDQKTFSSDIVLMSIK 367 Query: 347 TGEGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGLDI 404 EG ++L++KI K S +F+ + + ++R + +L ++ L + + D+ Sbjct: 368 NNEGEKDLVDKIVKKCGSKEFENIDIFL--NERQISNLRDCLKNLNDTDPIIANQLPFDL 425 Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++ +R +L +ITG E LL+ IFSKFCIGK Sbjct: 426 LSIEVRDGIKNLSRITGQELTEDLLNNIFSKFCIGK 461 >gi|293374951|ref|ZP_06621247.1| tRNA modification GTPase TrmE [Turicibacter sanguinis PC909] gi|325844341|ref|ZP_08168117.1| tRNA modification GTPase TrmE [Turicibacter sp. HGF1] gi|292646428|gb|EFF64442.1| tRNA modification GTPase TrmE [Turicibacter sanguinis PC909] gi|325489208|gb|EGC91590.1| tRNA modification GTPase TrmE [Turicibacter sp. HGF1] Length = 452 Score = 229 bits (584), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 165/459 (35%), Positives = 257/459 (55%), Gaps = 32/459 (6%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLD---GRI 60 ++TI +ST AISIIRLSG + I + K + ++ Y F D R Sbjct: 3 QDTIAGISTAMGEGAISIIRLSGDEALDIANKIFRGKDLKSVASHTINYGFIYDPETDRK 62 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+ L+ V +P++FT ED E + HGGI V N ILE L + RLA PGEF++RAF N Sbjct: 63 VDEVLVSVMRAPKTFTAEDIVEINCHGGILVTNKILE-LILLAGARLAEPGEFTKRAFLN 121 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G+IDL +AES+ D+I +++E L++ G+ G +S L + +++ +I + IE ++D+ E Sbjct: 122 GRIDLAQAESIMDIIHAKSEQSLSLALNGLDGRVSRLIKEMREEILNILANIEVNIDYPE 181 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSH------ISQGKLGEIIRNGYKIVILGHSNAGKSS 234 +DV+ E+ NDIL L I H + K G+I+R+G K VI+G N GKSS Sbjct: 182 YDDVE-----EMTNDIL-LPRSIDIHEKMLKLLDTAKTGKILRDGIKTVIIGRPNVGKSS 235 Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294 L N L +++ AIVT+I GTTRD + +++ G + + DTAGIR+T+DIVE G++++ Sbjct: 236 LLNQLMREEKAIVTNIAGTTRDTVEGYINIGGLTLNLIDTAGIRDTEDIVEAIGVEKSKK 295 Query: 295 EVENADLILLLKEINSK------KEISFPKNIDFIFIGTKSDLYSTYTEEYDHL-----I 343 + A+L+LL+ N K + +S + + I I K+DL + E D L Sbjct: 296 LINEAELVLLVLNNNEKLTADDRELLSLTNDKNRIIILNKTDLETQI--ERDELPNYIET 353 Query: 344 SSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCG 401 S +G+E L N+IK + + S+ RH+ L Q + + A S + Sbjct: 354 SMVLEKGIEVLENQIKKMFEIGDIGAKDMTYLSNARHIAKLKQAINSINDAISAMQLGML 413 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +++ A SLG+I G + LLD +FSKFC+GK Sbjct: 414 VDMVEIDIKNAWYSLGEIIGEDMGDSLLDELFSKFCLGK 452 >gi|330685267|gb|EGG96928.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis VCU121] Length = 459 Score = 229 bits (584), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 152/459 (33%), Positives = 256/459 (55%), Gaps = 27/459 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD---GRI 60 +TI ++ST AI I+RLSGP ++ + + K KKP S +G +D Sbjct: 4 DTITSISTPMGEGAIGIVRLSGPQAVEIGDKLYKGKKPLAEVDSHTINYGHIIDPETNET 63 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +++ ++ V +P++FT ED E + HGGI +N ILE L R+A PGE+++RAF N Sbjct: 64 VEEVMISVLRAPKTFTREDIIEINCHGGILTINRILE-LTMTHGARMAEPGEYTKRAFLN 122 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G+IDL +AE++ D I S+T+ +++M + G LS L + + I + +E ++D+ E Sbjct: 123 GRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKRQRQSILEILAQVEVNIDYPE 182 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 +DV++ +++ +L +K +I+ + G G+I+R G VI+G N GKSS+ N L Sbjct: 183 YDDVEDATTEFLLQQSKNIKQEINQLLETGAQGKIMREGLSTVIVGRPNVGKSSMLNNLI 242 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 + + AIVT++ GTTRDVL +++ G +++ DTAGIR+T+DIVEK G++R+ + AD Sbjct: 243 QDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDIVEKIGVERSRKALSQAD 302 Query: 301 LILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTY-TEEYDHLI-------- 343 LIL + +N+ + ++ KN D I I K+DL + E +I Sbjct: 303 LILFV--LNNNEALTEDDQTLYDVVKNEDVIVIINKTDLETHLDINEVKEMIGDTPLIQT 360 Query: 344 SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCG 401 S EG++EL +I+ + + + S+ RH+ L Q + ++ A E Sbjct: 361 SMLKQEGIDELEIQIRDLFFGGDVQNQDMTYVSNSRHISLLKQARQSIQDAIDAAESGIP 420 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+I G ++L+D +FS+FC+GK Sbjct: 421 MDMVQIDLTRTWEILGEIIGESASDELIDQLFSQFCLGK 459 >gi|330818728|ref|YP_004362433.1| tRNA modification GTPase TrmE [Burkholderia gladioli BSR3] gi|327371121|gb|AEA62477.1| tRNA modification GTPase TrmE [Burkholderia gladioli BSR3] Length = 468 Score = 229 bits (584), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 156/468 (33%), Positives = 244/468 (52%), Gaps = 33/468 (7%) Query: 3 HEKETIFAVSTGALPSAISIIRLS-----GPSCFQVCEFICKKKKPFPRKASLRYFFGLD 57 ++ + I A++T A I ++R+S + + +C + PR AS F Sbjct: 4 NDSDPIVAIATAAGRGGIGVVRVSFGRAGAAAAEALMRAVCGQVLA-PRHASYVPFLDAA 62 Query: 58 GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEFS 114 G LD+G+ + F +P S+TGE E HGG V+ +L+ + + LRLA PGEF+ Sbjct: 63 GAALDRGIALYFTAPNSYTGEHVLELQGHGGPIVLQLVLQRCLDAGREHALRLAEPGEFT 122 Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174 RRAF N K+DL +AE++ADLI + TE R + + G S ++ + +R +EA Sbjct: 123 RRAFLNDKLDLAQAEAVADLIEASTEAAVRSAGRSLDGVFSRDIHALVEDVIGLRMLVEA 182 Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234 LDF EEE + + + + ++ ++ + + G ++R G +V+ G N GKSS Sbjct: 183 TLDFPEEE-IDFLEAADARGKLARIRERLAQVLGDARQGALLREGMSVVLAGQPNVGKSS 241 Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294 L NALA ++AIVT I GTTRD + + +EG + I DTAG+RET+D VEK GI RT+ Sbjct: 242 LLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRETEDEVEKIGIARTWG 301 Query: 295 EVENADLILLLKEINS-----KKEIS--FPKNIDFIFIGTKSDLY----------STYTE 337 E+E AD++L L + + + I+ FP + + + K+DL S Sbjct: 302 EIERADVVLHLLDAQTGLGTEDRAIAERFPAGVPVVRVFNKTDLSGEAASVTHPGSGAAG 361 Query: 338 EYDHL---ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS 394 E D +S+ G+G++ L ++ I + + + +RHL L +L A+ Sbjct: 362 EVDLTELRLSAKQGDGIDLLRAELLRIAGWQAGAESVYL-ARERHLVALRAAQEHLAQAA 420 Query: 395 --LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++ LD+ AE LRLA L ITG + LL +IFS+FCIGK Sbjct: 421 DHADQNAQALDLFAEELRLAQEQLNSITGEFTSDDLLGVIFSRFCIGK 468 >gi|332705667|ref|ZP_08425743.1| tRNA modification GTPase trmE [Lyngbya majuscula 3L] gi|332355459|gb|EGJ34923.1| tRNA modification GTPase trmE [Lyngbya majuscula 3L] Length = 459 Score = 229 bits (584), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 158/463 (34%), Positives = 248/463 (53%), Gaps = 32/463 (6%) Query: 4 EKETIFAVSTGALPS--AISIIRLSGPSCFQVCEFICKKKKPFPRKA--SLRYFFGL--- 56 E +TI A++T +P +I I+RLSG + + + R+A S R +G Sbjct: 3 ESQTIAAIATAVVPQQGSIGIVRLSGRDAIAIARTLFQAPG---RQAWESHRILYGYVRH 59 Query: 57 --DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114 +++D+ LL++ +P S+T ED EFH HGGI V +L+ L RLA PGEF+ Sbjct: 60 PKTQQLVDEALLLIMQAPRSYTREDVVEFHCHGGIMPVQKVLQ-LCLEQGARLAQPGEFT 118 Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174 RAF NG++DL +AES+ADL+ S + + ++ G+ G+L++ + I + IEA Sbjct: 119 LRAFLNGRLDLTQAESVADLVGSRSPAAVQAALAGLQGKLATPIREARATCLDILAEIEA 178 Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234 +DF EED+ ++ + + ++S ++ GE++R G K+VILG N GKSS Sbjct: 179 RIDF--EEDLPPLDQGAIVAQLNNILTEVSQLLATADQGELLRTGLKVVILGRPNVGKSS 236 Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294 L NA ++ D AIVTD+PGTTRDV+ L + G V++ DTAGIRET D VEK G++R+ Sbjct: 237 LLNAWSRCDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETADQVEKIGVERSRS 296 Query: 295 EVENADLILLLKEINS-----KKEI-SFPKNIDFIFIGTKSDLYS-------TYTEEYDH 341 ADL+LL+ E + +EI + I + K+DL S +Y + Sbjct: 297 AAMAADLVLLVIEATTGWSAGDQEIYQQVQERPVILVINKTDLASDKAESTLSYPNTIER 356 Query: 342 LISSFTG--EGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-E 397 ++ + +G++ L I ++ + + ++R L++ L+ Sbjct: 357 VVKTAAAYNQGIDALEKAILDAVNRGNLQAADLDLAINQRQAAALTRAKMSLQQVQETIA 416 Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 K+ LD +LR A +LG+ITG E +LD IFS+FCIGK Sbjct: 417 KELPLDFWTIDLRGAIQALGEITGEEVTESVLDRIFSRFCIGK 459 >gi|167582764|ref|ZP_02375638.1| tRNA modification GTPase TrmE [Burkholderia thailandensis TXDOH] Length = 467 Score = 229 bits (584), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 158/467 (33%), Positives = 238/467 (50%), Gaps = 34/467 (7%) Query: 4 EKETIFAVSTGALPSAISIIRLS----GPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR 59 + + I A++T + I ++R+S G + + PR AS F G Sbjct: 5 DSDPIVAIATASGRGGIGVVRISLGRAGEAAALALSDALCGARLTPRHASYVPFLDGAGE 64 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEFSRR 116 LD+G+ + FP+P S+TGE E HGG V+ +L+ + + LRLA PGEF+RR Sbjct: 65 PLDRGIALYFPAPHSYTGEHVLELQGHGGPIVLQLVLQRCLDAGRAYGLRLAEPGEFTRR 124 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF N K+DL +AE++ADLI + TE R + + G S +D + +R +EA L Sbjct: 125 AFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRDIHALVDDVIALRMLVEATL 184 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 DF EEE + + + + ++ ++ + + G ++R G +V+ G N GKSSL Sbjct: 185 DFPEEE-IDFLEAADARGKLAHIRERLAHVLGDARQGALLREGLSVVLAGQPNVGKSSLL 243 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 NALA ++AIVT I GTTRD + + +EG + I DTAG+RET+D VEK GI RT+ E+ Sbjct: 244 NALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRETEDEVEKIGIARTWGEI 303 Query: 297 ENADLILLLKEINS-------KKEISFPKNIDFIFIGTKSDLYSTY---------TEEYD 340 E AD++L L + S FP + + + K+DL E D Sbjct: 304 ERADVVLHLLDARSGLGPDDEAIAARFPAGVPVVRVLNKTDLTEAPASVARVGGGAERAD 363 Query: 341 HL---ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL----SQTVRYLEMA 393 +S+ G+G++ L ++ I + + + +RHL L + R E A Sbjct: 364 LCEVRLSAKRGDGIDLLRGELLRIAGWQAGAESVYL-ARERHLIALRAAQAHLARAAEHA 422 Query: 394 SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 N + LD+ AE LRLA L ITG + LL +IFS+FCIGK Sbjct: 423 DQNAQ--ALDLFAEELRLAQEQLNSITGEFSSDDLLGVIFSRFCIGK 467 >gi|254438770|ref|ZP_05052264.1| GTPase, putative [Octadecabacter antarcticus 307] gi|198254216|gb|EDY78530.1| GTPase, putative [Octadecabacter antarcticus 307] Length = 396 Score = 229 bits (584), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 143/386 (37%), Positives = 212/386 (54%), Gaps = 10/386 (2%) Query: 57 DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 DG ++D+ I F SFTGE E HG AVV+ +L L + LR A PGEF+RR Sbjct: 19 DGSLIDQAFSISFGPRRSFTGEQVVELQTHGSPAVVSAVLNRLGAL-GLRPAEPGEFTRR 77 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 A +NG +DL + E LADLI +ETE QRR ++ G L L W L + +EA + Sbjct: 78 AMDNGVLDLAQVEGLADLIDAETESQRRQAVRVFQGALGDLASGWRTSLVRAAALLEATI 137 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 DF +E DV EV I + ++ + K+ E +R+G+++ ++G N+GKS+L Sbjct: 138 DFVDE-DVPVDVYPEVRTLIHVVSKEVRHEAAGVKVRERVRDGFEVALVGPPNSGKSTLL 196 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N LA ++ AI +DI GTTRDV+ + +DL+G V I DTAG+RE+DD++E GI R Sbjct: 197 NRLAGREAAITSDIAGTTRDVIEVRMDLDGLPVTILDTAGLRESDDVLEGIGIARGKDRA 256 Query: 297 ENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356 AD+ + L + S + +D I+ +K+DL + +S TG G++ L+ Sbjct: 257 AAADIRVHLMDNLSSDSVQSDFGLD-IYTKSKADLVIPPARDG---VSGETGYGMDRLLG 312 Query: 357 KIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK--DCGLDIIAENLRLASV 414 +I S L + + + RH L L+ +L D +D+++E+LR+A Sbjct: 313 QISSHLREQLAG--AGVATRMRHQRALETAADALDTVTLGLTVVDMPVDLLSEDLRIAIR 370 Query: 415 SLGKITGCVDVEQLLDIIFSKFCIGK 440 SL + G VDVE +L IFS FCIGK Sbjct: 371 SLDSLIGRVDVENVLGEIFSSFCIGK 396 >gi|94496563|ref|ZP_01303139.1| Small GTP-binding protein domain [Sphingomonas sp. SKA58] gi|94423923|gb|EAT08948.1| Small GTP-binding protein domain [Sphingomonas sp. SKA58] Length = 405 Score = 229 bits (584), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 147/422 (34%), Positives = 222/422 (52%), Gaps = 23/422 (5%) Query: 25 LSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI-LDKGLLIVFPSPESFTGEDSAEF 83 +SG E + + P PR+ASL G + LD+ LL+ P P + TGED AEF Sbjct: 1 MSGALAGTAIEMLAHRM-PAPRQASLALLRDPTGGMPLDRSLLLWLPGPHTVTGEDMAEF 59 Query: 84 HVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQR 143 H HGG AV++ + L+ +P LR A PGEF+RRAF++G++DL E L+DL+++ET+ QR Sbjct: 60 HCHGGRAVIDAVEAVLSAIPGLRRAQPGEFTRRAFDHGRMDLNAVEGLSDLLAAETQSQR 119 Query: 144 RLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFS-SKEVLNDILFLKND 202 R ++ G S W +L + + EA LDFS+E+DV + S ++ + L+ D Sbjct: 120 RAALSMAEGHFSRRIDDWRARLLALSAMAEAALDFSDEDDVPDASIEDDIAEQLSLLEGD 179 Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262 + + ++ E +R+G ++V+ G NAGKS+L NAL +D AIV+ I GTTRD + + Sbjct: 180 VRNVLAAPS-AERLRDGIRVVLAGPPNAGKSTLLNALVGRDAAIVSAIAGTTRDRIEVPA 238 Query: 263 DLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNID 321 ++G +DTAG+R + D +E GI R +E AD+IL L + + P+ D Sbjct: 239 AIDGVAYLFTDTAGLRDDVGDDIEAIGIDRARAALEAADIILWLGAAD-----AMPRP-D 292 Query: 322 FIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLY 381 I I +SD + +S+ TGE + ++L+ + +P + Sbjct: 293 AILIAAQSDRQNNARSGLP--VSALTGE-------NMGALLAALAARAATLLPGEGDYAL 343 Query: 382 HLSQ---TVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCI 438 H Q VR + L IIAE RL L +TG E +LD +FS FCI Sbjct: 344 HRRQRDLVVRLADHLRAARAHHDLLIIAEECRLGRAVLDTLTGQASTEDMLDRLFSGFCI 403 Query: 439 GK 440 GK Sbjct: 404 GK 405 >gi|325104167|ref|YP_004273821.1| tRNA modification GTPase trmE [Pedobacter saltans DSM 12145] gi|324973015|gb|ADY51999.1| tRNA modification GTPase trmE [Pedobacter saltans DSM 12145] Length = 455 Score = 229 bits (584), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 159/455 (34%), Positives = 256/455 (56%), Gaps = 20/455 (4%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL--DGR- 59 ++TI A++T AI +IRLSGP ++ + K K ++ S FG +G Sbjct: 4 QAEDTIVALATPVGAGAIGVIRLSGPDAIKITNKVFKGKD-LEKQDSHTVHFGTIREGDL 62 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 I+D+ L+ +F +P+S+T E+ E HG ++ I++ + + R A PGEF+ RAF Sbjct: 63 IIDEVLVSLFVAPKSYTKENIVEISCHGSSYIIENIIKLMIR-NGARGAKPGEFTLRAFL 121 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NG +DL +AE++ADLI+S +E +L+M+ M G SS D+L H S IE +LDFS Sbjct: 122 NGGLDLSQAEAVADLIASSSETSHQLAMKQMRGGFSSELKNLRDQLIHFASMIELELDFS 181 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 EE DV+ + ++ IL ++ + I+ G +++NG +VI G N GKS+L NAL Sbjct: 182 EE-DVEFANRGQLKQLILDIQKVLDKLITSFDQGNVLKNGVPVVIAGKPNVGKSTLLNAL 240 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 ++ AIV+DI GTTRD + +++++G + + DTAGIRET D++E +G++RT +++ A Sbjct: 241 LNEERAIVSDIAGTTRDTIEDEINVKGVIFRFIDTAGIRETQDVIEAKGVERTLEKIKQA 300 Query: 300 DLILLLKE------INSKKEISFPK--NIDFIFIGTKSDLYST-YTEEYDHL----ISSF 346 L++ L + K+++ K NI ++ + K DL S E Y L IS+ Sbjct: 301 RLLVYLADPIQDDFAAVKEQLDEVKAYNIPYLLVVNKKDLLSAEQIEAYSQLSPLFISAK 360 Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDII 405 G++EL +++ I++ + S+ RH+ L +T L + D + Sbjct: 361 NNLGVDELKDRLLEIVNLANLNSEDVMVSNIRHVEALQKTHEALVRVLYGIDNPVASDFL 420 Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A ++R + LG+ITG V + LLD IFSKFCIGK Sbjct: 421 AMDIRQSLYHLGEITGEVTTDDLLDNIFSKFCIGK 455 >gi|113953182|ref|YP_731887.1| tRNA modification GTPase TrmE [Synechococcus sp. CC9311] gi|123327545|sp|Q0I6N5|MNME_SYNS3 RecName: Full=tRNA modification GTPase mnmE gi|113880533|gb|ABI45491.1| tRNA modification GTPase TrmE [Synechococcus sp. CC9311] Length = 463 Score = 229 bits (584), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 154/461 (33%), Positives = 251/461 (54%), Gaps = 35/461 (7%) Query: 7 TIFAVSTGALPS--AISIIRLSGPSCFQVCEFICKKKKPFPRKA---SLRYFFG---LDG 58 +I A++T P I++IRLSGPS + I P + S R +G G Sbjct: 11 SIAAIATAVAPGQGGIAVIRLSGPSAVRAVAAITV----IPGQQVWESHRVLYGHVVAAG 66 Query: 59 RI--LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 + LD+ L++V +P SFTGED E H HGG+ V +L + + P +R A PGEFS+R Sbjct: 67 GVERLDEVLVLVMLAPRSFTGEDVVEIHCHGGVIAVQQVLARVLEQPGVRRALPGEFSQR 126 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 A NG++DL AE++ DL+ + ++ +L+M G+ G + ++L S +EA + Sbjct: 127 AVLNGRLDLTRAEAIGDLVGARSQRAAQLAMAGLDGGIQKKMVVLRERLLDQLSELEARV 186 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 DF EED+ + + +L ++ ++ ++ + ++ G+ G ++R+G ++ ++G N GKSSL Sbjct: 187 DF--EEDLPPLNGEALLQELQAVRLELLTLVADGERGSVVRHGLRVALVGRPNVGKSSLL 244 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N L++++ AIVTD+PGTTRD+L ++ L+G + + DTAGIR T + VEK GI R+ + Sbjct: 245 NLLSRRERAIVTDLPGTTRDLLESEIVLDGVPITLLDTAGIRATSNAVEKLGIARSRDAL 304 Query: 297 ENADLILLLKEI----NSKKEISF---PKNIDFIFIGTKSDLY--------STYTEEYDH 341 +ADL+LLL ++ + + F P+ + + +G K+DL + D Sbjct: 305 ASADLVLLLFDLAQGWSDDDQALFALIPEGVPCLRVGNKADLPLKAEPVAETVAASVADV 364 Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401 +S+ TG+G + L+ + + P + ++R L+ T S G Sbjct: 365 RLSAVTGDGEQALVQAVLE-RCGALGEQPLLLALNQRQ-SDLAVTAAEALARSEQVAADG 422 Query: 402 L--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L D +LR A SLG+ITG E +LD IFS+FCIGK Sbjct: 423 LPWDFWTIDLRQAIRSLGEITGEQLTESVLDRIFSRFCIGK 463 >gi|125625274|ref|YP_001033757.1| tRNA modification GTPase TrmE [Lactococcus lactis subsp. cremoris MG1363] gi|205415771|sp|A2RP37|MNME_LACLM RecName: Full=tRNA modification GTPase mnmE gi|124494082|emb|CAL99083.1| tRNA modification GTPase TrmE [Lactococcus lactis subsp. cremoris MG1363] gi|300072084|gb|ADJ61484.1| tRNA modification GTPase TrmE [Lactococcus lactis subsp. cremoris NZ9000] Length = 455 Score = 229 bits (584), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 156/457 (34%), Positives = 262/457 (57%), Gaps = 21/457 (4%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---D 57 + E +TI A+ST AI+I+RLSG ++ + + K K + AS +G + Sbjct: 3 LTQEFDTIAAISTPLGEGAIAIVRLSGTDALKIAQSVYKGKN-LAQVASHTINYGHIFEE 61 Query: 58 GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 R++D+ ++ V +P++FT ED E + HGGIAV IL+ L + RLA PGEF++RA Sbjct: 62 ERLVDEVMVSVMRAPKTFTREDIVEINTHGGIAVTQEILQLLLR-NGARLAEPGEFTKRA 120 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NG+IDL +AES+ DLI ++T+ ++++ + G LS + ++ + +E ++D Sbjct: 121 FLNGRIDLAQAESVMDLIRAKTDKAANIAVKQLDGSLSKMINNIRQEILESLAQVEVNID 180 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 + E +DV+ +S+ +L + + + +S K G+I+R G K I+G N GKSSL N Sbjct: 181 YPEYDDVETMTSQMLLEKTAHFEQLLENLLSTAKRGKILREGLKTAIIGRPNVGKSSLLN 240 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 L +++ AIVTDI GTTRDV+T ++ G +++ DTAGIRETDD+VE GI+R+ + Sbjct: 241 QLLREEKAIVTDIAGTTRDVITEFANIGGVPLELVDTAGIRETDDLVEAIGIERSKKALA 300 Query: 298 NADLILLL----KEINSK--KEISFPKNIDFIFIGTKSDL-----YSTYTEEYDHLISSF 346 ADL+LL+ E+ K + + KN + I + K+DL + + ++ IS+ Sbjct: 301 EADLVLLVLDASLELTDKDLELLELSKNANRIVLLNKTDLPEKLDINQISGDFIR-ISAL 359 Query: 347 TGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL--D 403 E L + KI I + + + ++ S+ RH+ + + ++ L+ A+ N GL D Sbjct: 360 KNENLSAVEEKINQIFFAGEIEAKDATVLSNARHISLVEEALKALKEAN-NGLALGLPVD 418 Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +I ++ LG+ITG ++L+ +FS+FC+GK Sbjct: 419 LIQVDVTRCWQLLGEITGEAAPDELITQLFSQFCLGK 455 >gi|239637283|ref|ZP_04678270.1| tRNA modification GTPase TrmE [Staphylococcus warneri L37603] gi|239597120|gb|EEQ79630.1| tRNA modification GTPase TrmE [Staphylococcus warneri L37603] Length = 459 Score = 229 bits (583), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 152/459 (33%), Positives = 256/459 (55%), Gaps = 27/459 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD---GRI 60 +TI ++ST AI I+RLSGP ++ + + K KKP S +G +D Sbjct: 4 DTITSISTPMGEGAIGIVRLSGPQAVEIGDKLYKGKKPLAEVDSHTINYGHIIDPETSET 63 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +++ ++ V +P++FT ED E + HGGI +N ILE L R+A PGE+++RAF N Sbjct: 64 VEEVMISVLRAPKTFTREDIIEINCHGGILTINRILE-LTMTHGARMAEPGEYTKRAFLN 122 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G+IDL +AE++ D I S+T+ +++M + G LS L + + I + +E ++D+ E Sbjct: 123 GRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKRQRQSILEILAQVEVNIDYPE 182 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 +DV++ +++ +L +K +I+ + G G+I+R G VI+G N GKSS+ N L Sbjct: 183 YDDVEDATTEFLLQQSKNIKQEINQLLETGAQGKIMREGLSTVIVGRPNVGKSSMLNNLI 242 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 + + AIVT++ GTTRDVL +++ G +++ DTAGIR+T+DIVEK G++R+ + AD Sbjct: 243 QDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDIVEKIGVERSRKALSQAD 302 Query: 301 LILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTY-TEEYDHLI-------- 343 LIL + +N+ + ++ KN D I I K+DL + E +I Sbjct: 303 LILFV--LNNNEALTEDDQTLYDVVKNEDVIVIINKTDLETHLDINEVKAMIGDTPLIQT 360 Query: 344 SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCG 401 S EG++EL +I+ + + + S+ RH+ L Q + ++ A E Sbjct: 361 SMLKQEGIDELEIQIRDLFFGGDVQNQDMTYVSNSRHISLLKQARQSIQDAIDAAESGIP 420 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+I G ++L+D +FS+FC+GK Sbjct: 421 MDMVQIDLTRTWEILGEIIGESASDELIDQLFSQFCLGK 459 >gi|222099393|ref|YP_002533961.1| tRNA modification GTPase trmE [Thermotoga neapolitana DSM 4359] gi|221571783|gb|ACM22595.1| tRNA modification GTPase trmE [Thermotoga neapolitana DSM 4359] Length = 455 Score = 229 bits (583), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 160/457 (35%), Positives = 255/457 (55%), Gaps = 30/457 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF-PRKASLRYFFGLDGRILDKG 64 +TI AV+T AI+I+RLSGP + + K + PRKA + + +G +D+ Sbjct: 7 DTIVAVATPPGKGAIAILRLSGPESWDIVRKHFKTRSNIVPRKA-IHGWIRENGEDIDEV 65 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 ++I + SP S+TGED E HGG VV +L+ R+A PGEF++RAF NGK+D Sbjct: 66 VVIFYRSPRSYTGEDMVEVMCHGGPFVVKKLLDVFLS-AGARMAEPGEFTKRAFLNGKMD 124 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE--EE 182 L AE++ DLI +++E +LS++ + G L ++L ++ + I +LD+ + E Sbjct: 125 LTSAEAVRDLIEAKSEASLKLSLKNLKGGLRQFVETLREELINVLAEIRVELDYPDDVET 184 Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 DV++ +K I + + + + G ++ G ++VI+G N GKS+L N L K+ Sbjct: 185 DVESVKTK-----IESIHERLKEELKKADAGIMLNRGLRMVIVGKPNVGKSTLLNRLLKE 239 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADL 301 D AIVTDIPGTTRDV++ ++ ++G L ++ DTAG+R ET D+VE+ GI+RTF E+E AD+ Sbjct: 240 DRAIVTDIPGTTRDVISEEIVIKGILFRVVDTAGVRSETRDLVERLGIERTFQEIEKADI 299 Query: 302 ILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEEY--------DHL--ISS 345 +L + + +S + + K+ ++ + K D+ EE H+ IS+ Sbjct: 300 VLFVLDASSPLDDEDRLILERIKHKRYLVVINKVDIVERIDEEELKRKLGTDRHIVKISA 359 Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLD 403 GEGLE+L + F+K S+ ++ R L + LE A SL K +D Sbjct: 360 LKGEGLEKLEEAVYRETQEIFEKGSSSLITNLRQKQLLENVKKSLESAIESLKNK-TPID 418 Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++ +L A L ++TG E LLD IFS FC+GK Sbjct: 419 LVSIDLERALHVLDEVTGRSFREDLLDAIFSTFCVGK 455 >gi|15643037|ref|NP_228080.1| tRNA modification GTPase TrmE [Thermotoga maritima MSB8] gi|14195303|sp|Q9WYA4|MNME_THEMA RecName: Full=tRNA modification GTPase mnmE gi|4980765|gb|AAD35356.1|AE001709_2 thiophene oxidation protein ThdF-related GTPase [Thermotoga maritima MSB8] Length = 450 Score = 229 bits (583), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 160/455 (35%), Positives = 257/455 (56%), Gaps = 26/455 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCE-FICKKKKPFPRKASLRYFFGLDGRILDKG 64 +TI AV+T AI+I+RLSGP +++ + + + K PRKA + + +G +D+ Sbjct: 2 DTIVAVATPPGKGAIAILRLSGPDSWKIVQKHLRTRSKIVPRKA-IHGWIHENGEDVDEV 60 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 +++ + SP+S+TGED E HGG VV +L+ K R+A PGEF++RAF NGK+D Sbjct: 61 VVVFYKSPKSYTGEDMVEVMCHGGPLVVKKLLDLFLK-SGARMAEPGEFTKRAFLNGKMD 119 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L AE++ DLI +++E +LS+ + G L +L + + I +LD+ +E + Sbjct: 120 LTSAEAVRDLIEAKSETSLKLSLRNLKGGLRDFVDSLRRELIEVLAEIRVELDYPDEIET 179 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 ++ EV+ + +K ++ + + G ++ G ++VI+G N GKS+L N L +D Sbjct: 180 ---NTGEVVTRLERIKEKLTEELKKADAGILLNRGLRMVIVGKPNVGKSTLLNRLLNEDR 236 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLIL 303 AIVTDIPGTTRDV++ ++ + G L +I DTAG+R ET+D+VE+ GI+RT E+E AD++L Sbjct: 237 AIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVL 296 Query: 304 LLKEINS------KKEISFPKNIDFIFIGTKSDLYSTYTEEY--------DHL--ISSFT 347 + + +S +K + KN ++ + K D+ EE H+ IS+ Sbjct: 297 FVLDASSPLDEEDRKILERIKNKRYLVVINKVDVVEKINEEEIKNKLGTDRHMVKISALK 356 Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDII 405 GEGLE+L I F++ S+ ++ R L +LE A SL E +D+ Sbjct: 357 GEGLEKLEESIYRETQEIFERGSDSLITNLRQKQLLENVKGHLEDAIKSLKE-GMPVDMA 415 Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + +L A L ++TG E LLD IFS FC+GK Sbjct: 416 SIDLERALNLLDEVTGRSFREDLLDTIFSNFCVGK 450 >gi|153854261|ref|ZP_01995560.1| hypothetical protein DORLON_01554 [Dorea longicatena DSM 13814] gi|149753036|gb|EDM62967.1| hypothetical protein DORLON_01554 [Dorea longicatena DSM 13814] Length = 460 Score = 229 bits (583), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 167/460 (36%), Positives = 253/460 (55%), Gaps = 33/460 (7%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF----PRKASLRYFFGLDG-RIL 61 TI A+ST S I I+R+SGP FQ+ + + K KK + ++ Y + +DG +++ Sbjct: 8 TIAAISTAMSNSGIGIVRMSGPEAFQIADRVYKGKKEKKLCDQKSHTIHYGYIVDGEQVI 67 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121 D+ L+++ P S+TGED+ E + HGG+ VV ILE L K R A PGE+++RAF NG Sbjct: 68 DEVLVMLMRGPHSYTGEDTVEINCHGGVYVVKRILEVLIK-NGARPAEPGEYTKRAFLNG 126 Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181 ++DL +AE++ DLI+S+ E + S+ + G + + +K+ + +FIE LD E Sbjct: 127 RLDLSQAEAVGDLIASQNEYALQSSVSQLKGNIKDKISEMREKILYHTAFIETALDDPEH 186 Query: 182 EDVQNFSS--KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 V + K+V+++I+ + G+ II+ G + VILG NAGKSSL N L Sbjct: 187 ISVDGYGETLKKVVDEIMEAMKRLLDSCDDGR---IIKEGVRTVILGKPNAGKSSLLNVL 243 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 +D AIVTDI GTTRDVL L+L+G + I DTAGIR+T+D+VEK G+ R + A Sbjct: 244 LGEDRAIVTDIAGTTRDVLEEHLNLKGISLNIMDTAGIRDTEDVVEKIGVDRAKEYADKA 303 Query: 300 DLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL--------ISS 345 DLIL + + N + + K I + KSDL T+E + L IS+ Sbjct: 304 DLILYVIDASRPLDENDAEILHLIKGKRAIILLNKSDLDMQVTKEQEELPEEFPVIEISA 363 Query: 346 FTGEGLEELINKIKSILSNKFK-KLPFS---IPSHKRHLYHLSQTVRYLEMASLN-EKDC 400 +G+EEL + +K + F+ +L F+ ++ R L LE + + D Sbjct: 364 KNVQGIEELEDTLKEMF---FQGELTFNDEIYITNVRQKTALQDAYAALERVNDSIAADM 420 Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D + +L A +LG ITG E L++ IFSKFC+GK Sbjct: 421 PEDFYSIDLMDAYEALGNITGETIGEDLVNEIFSKFCMGK 460 >gi|224498350|ref|ZP_03666699.1| tRNA modification GTPase TrmE [Listeria monocytogenes Finland 1988] Length = 457 Score = 229 bits (583), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 151/457 (33%), Positives = 248/457 (54%), Gaps = 21/457 (4%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRI 60 E +TI A+ST AI+IIRLSGP Q+ + I K S +G DG + Sbjct: 2 EFDTIAAISTPPGEGAIAIIRLSGPEAIQIADRIFYAKNSLSDAESHTIHYGHIKEDGEV 61 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +++ + V +P +FT ED E + HGGI VN +L+ L + LA PGEF++RAF N Sbjct: 62 IEEVMATVMRAPRTFTREDVVEINAHGGIVSVNRVLQLLLR-NGANLAEPGEFTKRAFLN 120 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G+IDL +AE++ DLI ++T+ +++ M G LS L ++ + +E ++D+ E Sbjct: 121 GRIDLSQAEAVMDLIRAKTDRAMGVAIRQMDGNLSRLIRNLRQEILDALAQVEVNIDYPE 180 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 +DV+ + + +L ++ + + G+I+R G I+G N GKSSL N L Sbjct: 181 YDDVEEMTQRMLLEKTELVRASVEQLLQTASQGKILREGLATAIIGRPNVGKSSLLNQLI 240 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 +++ AIVTDI GTTRD++ +++ G +++ DTAGIRET+DIVEK G++R+ + +AD Sbjct: 241 QEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETEDIVEKIGVERSRKALADAD 300 Query: 301 LILLL----KEINSKKEISFPKNI--DFIFIGTKSDLYSTYTEEYDHLISS--------- 345 ILL+ +E+ ++ E F +++ + K+DL + E I+ Sbjct: 301 FILLVLNQNEELTAEDEALFEAAAGHNYVVVLNKTDLETKLDIEKVREIAGENPIVATSL 360 Query: 346 FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLD 403 EGLE L IK++ + + S+ RH+ L Q + L + + +D Sbjct: 361 VNDEGLEALEEAIKTLFFAGDIDAGDATYVSNVRHIALLHQALDALNAVTTGIQLGMPVD 420 Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 I+ ++ A LG+ITG ++LLD +F++FC+GK Sbjct: 421 IVQIDMTRAWDLLGEITGDSVQDELLDQLFNQFCLGK 457 >gi|61679425|pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga Maritima gi|61679427|pdb|1XZQ|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga Maritima Complexed With 5-Formyl-Thf Length = 482 Score = 229 bits (583), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 160/455 (35%), Positives = 257/455 (56%), Gaps = 26/455 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCE-FICKKKKPFPRKASLRYFFGLDGRILDKG 64 +TI AV+T AI+I+RLSGP +++ + + + K PRKA + + +G +D+ Sbjct: 34 DTIVAVATPPGKGAIAILRLSGPDSWKIVQKHLRTRSKIVPRKA-IHGWIHENGEDVDEV 92 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 +++ + SP+S+TGED E HGG VV +L+ K R+A PGEF++RAF NGK+D Sbjct: 93 VVVFYKSPKSYTGEDMVEVMCHGGPLVVKKLLDLFLK-SGARMAEPGEFTKRAFLNGKMD 151 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L AE++ DLI +++E +LS+ + G L +L + + I +LD+ +E + Sbjct: 152 LTSAEAVRDLIEAKSETSLKLSLRNLKGGLRDFVDSLRRELIEVLAEIRVELDYPDEIET 211 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 ++ EV+ + +K ++ + + G ++ G ++VI+G N GKS+L N L +D Sbjct: 212 ---NTGEVVTRLERIKEKLTEELKKADAGILLNRGLRMVIVGKPNVGKSTLLNRLLNEDR 268 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLIL 303 AIVTDIPGTTRDV++ ++ + G L +I DTAG+R ET+D+VE+ GI+RT E+E AD++L Sbjct: 269 AIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVL 328 Query: 304 LLKEINS------KKEISFPKNIDFIFIGTKSDLYSTYTEEY--------DHL--ISSFT 347 + + +S +K + KN ++ + K D+ EE H+ IS+ Sbjct: 329 FVLDASSPLDEEDRKILERIKNKRYLVVINKVDVVEKINEEEIKNKLGTDRHMVKISALK 388 Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDII 405 GEGLE+L I F++ S+ ++ R L +LE A SL E +D+ Sbjct: 389 GEGLEKLEESIYRETQEIFERGSDSLITNLRQKQLLENVKGHLEDAIKSLKE-GMPVDMA 447 Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + +L A L ++TG E LLD IFS FC+GK Sbjct: 448 SIDLERALNLLDEVTGRSFREDLLDTIFSNFCVGK 482 >gi|238494022|ref|XP_002378247.1| mitochondrial GTPase (Mss1), putative [Aspergillus flavus NRRL3357] gi|220694897|gb|EED51240.1| mitochondrial GTPase (Mss1), putative [Aspergillus flavus NRRL3357] Length = 621 Score = 229 bits (583), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 124/322 (38%), Positives = 192/322 (59%), Gaps = 23/322 (7%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGL-----DGRI 60 TI+A+ST + +AI+++R+SGP C ++ + +C K P PR A++R F Sbjct: 65 TIYALSTASGRAAIAVVRVSGPGCVRIYQALCPKAALPRPRFAAVRTLFDPTREPSSSSA 124 Query: 61 LDKGLLIV-FPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN----LRLANPGEFSR 115 LD G L++ FP+P + TGED E H+HGG A+V +L ++++ +R A PGEF+R Sbjct: 125 LDAGALVLYFPAPNTVTGEDVLELHLHGGPAIVKSVLTAISRVSQPDSLVRYAEPGEFTR 184 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF N ++DL + E+L D +S++TE QRRL++ G S LS Y QW +L + R +EA Sbjct: 185 RAFMNNRLDLPQIEALGDTLSADTEQQRRLAVRGASDALSRRYEQWRQQLLYARGELEAL 244 Query: 176 LDFSEEEDVQNFSSKEVLN---DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232 +DF+E++ S + VL+ + L+ + HI GE++R+G KI +LG NAGK Sbjct: 245 IDFAEDQHFDESSDELVLSVAAQVQALRVQVGFHIQNASKGELLRHGIKIALLGAPNAGK 304 Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD---------DI 283 SSL N + K+ AIV+ GTTRD++ + +DL G+ K+ D AGIR Sbjct: 305 SSLLNQIVGKEAAIVSTEEGTTRDIVDVGVDLSGWYCKLGDMAGIRSEPVNGKESVVIGA 364 Query: 284 VEKEGIKRTFLEVENADLILLL 305 VEKEGI+R +D+++++ Sbjct: 365 VEKEGIRRAKARALESDVVIVV 386 >gi|78185703|ref|YP_378137.1| tRNA modification GTPase TrmE [Synechococcus sp. CC9902] gi|123580994|sp|Q3AVY3|MNME_SYNS9 RecName: Full=tRNA modification GTPase mnmE gi|78169997|gb|ABB27094.1| tRNA modification GTPase trmE [Synechococcus sp. CC9902] Length = 451 Score = 229 bits (583), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 145/445 (32%), Positives = 251/445 (56%), Gaps = 34/445 (7%) Query: 18 SAISIIRLSGPSCFQVCEFI--CKKKKPFPRKASLRYFFG----LDG-RILDKGLLIVFP 70 I++IRLSGP QV + + C + + S R +G +DG R LD+ LL++ Sbjct: 19 GGIAVIRLSGPVAEQVAQAVVQCPGHQEW---GSHRILYGHVMAVDGQRRLDEVLLLLMR 75 Query: 71 SPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAES 130 +P SFTGED E H HGG+ V +LE + + P +R A PGEFS+RA NG++DL +AE+ Sbjct: 76 APRSFTGEDVVEIHCHGGVMAVQQVLERVLEHPGVRRALPGEFSQRAVLNGRLDLTQAEA 135 Query: 131 LADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186 +++L+S+ + L+M G+ G ++ L + +D+LT + EA +DF E+D+ Sbjct: 136 VSELVSARSRRAADLAMAGLDGGIQARITVLRERLLDQLTEL----EARVDF--EDDLPP 189 Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246 +LN++ ++ ++ + ++ G+ G+ +R+G ++ ++G N GKSSL N L++++ AI Sbjct: 190 LDGTALLNELQAVRVELLALVADGERGDALRHGLRVALVGRPNVGKSSLLNRLSRRERAI 249 Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL- 305 VT++PGTTRD+L ++ L+G + + DTAGIR T+D VE+ GI R+ + +AD+++L+ Sbjct: 250 VTELPGTTRDLLESEIVLDGVPITLMDTAGIRATNDAVEQLGIARSEEALISADVVVLIV 309 Query: 306 ------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEE-YDHLISSFTGEGLEELINK- 357 E +++ P ++ + + KSDL D S+ G G + + Sbjct: 310 DGHAGWTETDAQLLARIPNDVPRVVVANKSDLDGPPLPGLVDVQFSALNGAGEDAFVQVL 369 Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTV--RYLEMASLNEKDCGLDIIAENLRLASVS 415 ++ + + S+ + +R L ++ R E+A ++ D +LR A Sbjct: 370 LERCGAGDAAGIVLSLNTRQRDLASVAAAALERSHEVA---QQQLPWDFWTIDLREAIRG 426 Query: 416 LGKITGCVDVEQLLDIIFSKFCIGK 440 LG+ITG E +L+ +FS+FCIGK Sbjct: 427 LGEITGEELTEAVLERVFSRFCIGK 451 >gi|187251665|ref|YP_001876147.1| putative GTPase [Elusimicrobium minutum Pei191] gi|186971825|gb|ACC98810.1| putative GTPase [Elusimicrobium minutum Pei191] Length = 449 Score = 229 bits (583), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 167/455 (36%), Positives = 253/455 (55%), Gaps = 28/455 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR-ILDKG 64 +TI AV TG+ A+++IR+SGP +Q C K P + + DG +LDK Sbjct: 3 DTICAVITGS-GGAVAVIRVSGPEAWQ-CALKLTKSSNGPEVNRVYHQKLFDGDFLLDKA 60 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 L+ F +P+SFTG D+ EF H + +L+ L+ M +R A GEFS RAF NGK+D Sbjct: 61 LVTYFKAPKSFTGGDTVEFACHASNYIKGRLLQILSDM-GVRPAKNGEFSMRAFINGKMD 119 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L+EA L DLI+S+ +M M G+LS+ + + + L+ + + IE +D +EE + Sbjct: 120 LVEANGLCDLIASDNAASHGAAMNSMEGKLSAEFKRIKNSLSELLAQIEVRIDDVDEE-M 178 Query: 185 QNFS---SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 Q +K++LND+ D++S S GK ++ G K+ ILG NAGKSSL NA+ Sbjct: 179 QPLDPGYTKKILNDVKLRAGDLASTFSTGKF---VKEGIKVAILGVPNAGKSSLLNAIVG 235 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD-DIVEKEGIKRTFLEVENAD 300 D AIV++ GTTRD + D +G+ + ++DTAGI+E D+ E+EG++R+ + +D Sbjct: 236 FDRAIVSEHSGTTRDTVEEIADFKGHKIILTDTAGIKEGALDVAEREGMRRSLNAADKSD 295 Query: 301 LILLLKEINSKKEISFP---------KNIDFIFIGTKSDLYSTYTE---EYDHL--ISSF 346 +I+ + SKK + K I K D+ T E E D + +SS Sbjct: 296 IIIFTAD-TSKKHLQADHELWNSLKIKGKKIILACNKKDINFTPPEFLYEADKVVNVSSK 354 Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDII 405 TGEG+EEL N + S+L K ++ + H L +T + LE A +KD GL+ + Sbjct: 355 TGEGVEELKNSVISLLDAGDIKADSNLITSAVHYDMLVKTEKELEEALKALKKDLGLEFL 414 Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 AE++R A + L +I G V + +L IIFSKFC+GK Sbjct: 415 AEHVRRALLHLKEIIGEVYADDILGIIFSKFCVGK 449 >gi|238022844|ref|ZP_04603270.1| hypothetical protein GCWU000324_02764 [Kingella oralis ATCC 51147] gi|237865652|gb|EEP66790.1| hypothetical protein GCWU000324_02764 [Kingella oralis ATCC 51147] Length = 390 Score = 229 bits (583), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 128/334 (38%), Positives = 192/334 (57%), Gaps = 9/334 (2%) Query: 20 ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGED 79 + +IR+SG + + I K P PR A F G +D G+L+ F +P SFTGED Sbjct: 26 VGVIRISGSQLLPIAQAITGGKTPKPRTALYTDFLDEHGNAIDNGILLYFAAPASFTGED 85 Query: 80 SAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET 139 E HGG V+ +L ++ R+A GEF++RAF N K+DL +AES+ADLI + + Sbjct: 86 VIELQGHGGQIVLQMLLNRCLQL-GARIAEAGEFTKRAFLNNKLDLAQAESVADLIDASS 144 Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFL 199 + R+++ + G S+ +D L +R +EA LDF EEE + + + + L Sbjct: 145 QAAARMAVRSLKGAFSNRIHALVDDLITLRMLVEATLDFPEEE-IDFLEAADAKGKLAAL 203 Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259 +N++S+ +S G I+R G +V++G N GKSSL NALA D+AIVT I GTTRD + Sbjct: 204 QNELSTILSTAGQGAILREGMNVVLVGAPNVGKSSLLNALAGDDIAIVTHIAGTTRDTVR 263 Query: 260 IDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL----KEINSKKEI- 314 + L+G + I+DTAG+RETDD+VEK GI+R+ V+NAD+ L+L + IN+ + Sbjct: 264 EHITLDGVPIHITDTAGLRETDDLVEKIGIERSEKAVQNADVALILIDPAEGINAATQAI 323 Query: 315 --SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF 346 P ++ I I K+DL + D+ I S Sbjct: 324 LNKLPSSLTRIVIHNKADLRNETPSRVDNQIGSL 357 >gi|95929981|ref|ZP_01312721.1| tRNA modification GTPase TrmE [Desulfuromonas acetoxidans DSM 684] gi|95133950|gb|EAT15609.1| tRNA modification GTPase TrmE [Desulfuromonas acetoxidans DSM 684] Length = 458 Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 156/456 (34%), Positives = 250/456 (54%), Gaps = 21/456 (4%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVC--EFICKKKKPFPRKASLRYFFGL---DG 58 E +TI A T A++I+RLSG + F K F S +++G +G Sbjct: 5 EDDTIIAPLTAPGHGAVTILRLSGSKSLDLVLTHFFNKSFNRFRSLLSHYFYYGFICDEG 64 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 +D+ +++ SP+S+T ED E H H +AVV I++ + +R+A PGEF+ RAF Sbjct: 65 VSIDEVMVVYMASPKSYTREDVVEIHCHSSVAVVRNIIDIFVR-SGVRIAEPGEFTYRAF 123 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 +NG+IDL AE++ADLI++++ M +L++ M G LS ++ D + + + IEA +DF Sbjct: 124 KNGRIDLSHAEAIADLIAAKSTMASQLALRQMKGALSGRVYEFKDTILSMLALIEAYIDF 183 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 EE D+ + + D L + + +S G+I+R G+ ++ILG N GKSSL N Sbjct: 184 PEE-DIDKHHALSIQRDCELLLSKVEETLSGYDEGKILREGFSLLILGKPNVGKSSLLNL 242 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L +D AIVT+IPGTTRD++ + L GY + + DTAGIR++DD +E++G+ R ++ + Sbjct: 243 LVGEDRAIVTNIPGTTRDIIQETITLHGYPITVIDTAGIRDSDDPIEQDGVSRAKNQIGS 302 Query: 299 ADLILLLKEINSKKEISFPKNID------FIFIGTKSD------LYSTYTEEYDHLISSF 346 AD+IL + + + +IS ++I FIF+ K D S + + IS Sbjct: 303 ADVILYMVDGSQPFDISIVQDIKLLPADRFIFVVNKCDKPDFDFQESQISNFINFSISVK 362 Query: 347 TGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGLDI 404 G+E+LIN I L+ N + S +RH L + +L + E + Sbjct: 363 ENTGVEQLINGILDKLNLNSRHHDESVVLSDRRHKDILVRCHAFLKDFIEAFESGHSDEF 422 Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +A +LR A +LG+ITG + +L+ IF +FCIGK Sbjct: 423 LALHLREALQALGEITGETTPDDILNDIFGRFCIGK 458 >gi|319651095|ref|ZP_08005229.1| TRNA modification GTPase [Bacillus sp. 2_A_57_CT2] gi|317397265|gb|EFV77969.1| TRNA modification GTPase [Bacillus sp. 2_A_57_CT2] Length = 461 Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 152/461 (32%), Positives = 260/461 (56%), Gaps = 25/461 (5%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK----KKKPFPRKASLRYFFGLD-- 57 E +TI A+ST AI+I+RLSG F++ + + + K+ ++ Y +D Sbjct: 2 EFDTIAAISTPMGEGAIAIVRLSGDQAFEIADRLFRGVGGKRLKDVASHTIHYGHIMDPK 61 Query: 58 -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 G+I ++ ++ P++FT ED E + HGG+ VN +L+ L RLA PGEF++R Sbjct: 62 TGQIAEEVMVSAMKGPKTFTKEDVIEINCHGGLVSVNRVLQLLLN-NGARLAEPGEFTKR 120 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NG+IDL +AE++ DLI ++T+ +++ M G LS L + ++ I + +E ++ Sbjct: 121 AFLNGRIDLSQAEAVMDLIRAKTDRAMNMALGQMEGRLSKLIQKLRQEILEILAHVEVNI 180 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D+ E +DV+ + + ++ ++K +I + + G+I+R G VI+G N GKSSL Sbjct: 181 DYPEYDDVEEMTHQMLMEKASYVKQEIEKLLQTSQQGKILREGLSTVIVGRPNVGKSSLL 240 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N+L ++ AIVTDIPGTTRDV+ +++ G +++ DTAGIRET+DIVE+ G++++ + Sbjct: 241 NSLVHENKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDIVERIGVEKSRQVL 300 Query: 297 ENADLILLL----KEINSKKEISFP--KNIDFIFIGTKSDLYSTYT-------EEYDHLI 343 + ADLILL+ E+ S+ E F + +D I I K+DL ++ L+ Sbjct: 301 KEADLILLVLNYSDELTSEDENIFKAVEGMDVIVIVNKTDLDQKIDMNRVRELSKHHKLV 360 Query: 344 SS--FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKD 399 ++ +G+++L I S+ + + + S+ RH+ L+Q ++ A E Sbjct: 361 TTSLLEDQGVDDLEEAIASLFFAGSIEAGDMTYVSNTRHIALLNQAQNAIDEAMQGVEMG 420 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +DI+ +L LG+I G E L+D +FS+FC+GK Sbjct: 421 TPIDIVQIDLTRTWELLGEIIGDSVHESLIDQLFSQFCLGK 461 >gi|327354725|gb|EGE83582.1| mitochondrial GTPase [Ajellomyces dermatitidis ATCC 18188] Length = 636 Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 174/548 (31%), Positives = 268/548 (48%), Gaps = 114/548 (20%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLD-- 57 ++ TI+A+ST +AI+I+R+SGP+C Q+ +C K P PR A+LR F Sbjct: 90 LDEPSPTIYALSTAPGRAAIAIVRISGPACVQIYNALCPKSPLPEPRVAALRTLFDPSVP 149 Query: 58 ---GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP----------- 103 ILD+ +++ FP+P++ TGED E H+HGG AVV +L + + Sbjct: 150 PSVNSILDRAVVLHFPAPKTVTGEDILELHIHGGPAVVKAVLNAIPRCAESASSDKFAPS 209 Query: 104 NLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWID 163 ++R A PGEF+RRAF N ++ L + E+L + +S+ETE QRRL++ G + L+ Y +W Sbjct: 210 SIRYAEPGEFTRRAFLNDRLSLPQIEALGNTLSAETEHQRRLAIRGTNDSLAVRYERWRQ 269 Query: 164 KLTHIRSFIEADLDFSEE----EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG 219 +L + R +EA +DFSE+ E + F S + + L I+ HI GE++RNG Sbjct: 270 QLLYTRGEMEALIDFSEDQHFDESTEEFVSS-ITGETRNLVRQINMHIENASKGELLRNG 328 Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 K+ +LG NAGKSSL N + ++ AIV+ GTTRD++ + +DL GY K D AG+R Sbjct: 329 IKVALLGAPNAGKSSLLNRIVGREAAIVSSEEGTTRDIVDVGVDLGGYFCKFGDMAGLRS 388 Query: 280 TD---------DIVEKEGIKRTFLEVENADLILL---LKEINSKKEISF---PKNID--- 321 VE+EGI+R +D++++ L+E +S + + P+ ID Sbjct: 389 GHIAQAGQMPIGAVEQEGIRRAKARALESDVVIVVLSLEEGDSGRGVKLVLEPEVIDAVQ 448 Query: 322 --------FIFIGTKSDLYSTYTE---EYDHLISSFTGE--------------------- 349 I K D Y+ T L++S GE Sbjct: 449 SCIALEKHMIVAVNKFDKYTPATNTDGTAQGLVNSLAGEITSLVPHIVQDQIFLISCREA 508 Query: 350 ---------------GLEELINKIKSILS--------NKFKKLPFSIP---SHK------ 377 L+ELI K + + +KF KL + +H+ Sbjct: 509 ENEQSETADPGNIQTLLKELIRTFKRMSTPSELENGNDKFDKLYWEDSLGVTHRQSSNLQ 568 Query: 378 ---RHLYH-LSQTVRYLEMASLNEK-DCGLDII--AENLRLASVSLGKITG---CVDVEQ 427 +HL LSQT + + A E+ + +DI+ AE+LR A+ L KITG DVE Sbjct: 569 KCVQHLNDFLSQTCQTPDNAGNAEQIELNIDIVTAAEHLRFAADCLAKITGRGESGDVED 628 Query: 428 LLDIIFSK 435 +L ++F K Sbjct: 629 VLGVVFEK 636 >gi|302872910|ref|YP_003841546.1| tRNA modification GTPase TrmE [Caldicellulosiruptor obsidiansis OB47] gi|302575769|gb|ADL43560.1| tRNA modification GTPase TrmE [Caldicellulosiruptor obsidiansis OB47] Length = 455 Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 166/459 (36%), Positives = 249/459 (54%), Gaps = 27/459 (5%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-----PFP-RKASLRYFFGLD 57 E +TI A+ST I I+R+SG + V + K +K P R A+L + D Sbjct: 2 EFDTIVAISTPVGTGGIGIVRISGKDAYDVAGKLVKSRKYKSIHDIPVRYAALVDVYDGD 61 Query: 58 GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 +D+ +LI F SP S+TGED E HGG+ V+ ILE K R A PGEF++RA Sbjct: 62 -EFVDEAILIKFKSPRSYTGEDVVEIQSHGGMVVLKRILEAAIK-NGARHAMPGEFTKRA 119 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NGKIDL +AE++ D+I+S+T++ ++ + + + G LS + L ++ + IEA +D Sbjct: 120 FLNGKIDLSQAEAVIDIINSKTKLLQQNAAKQLKGMLSQRIEEISQLLLNLVATIEASID 179 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 FSE E V S E+L+ I I I + G+ I++G VI+G N GKSSL N Sbjct: 180 FSEHE-VDEVSHDEILSTIDDALAKIEKLIKSYETGKAIKSGIYTVIVGRPNVGKSSLLN 238 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 L K++ AIVTDIPGTTRDV+ LD+EG + ++DTAG+R T+D+VEK G++RT +E Sbjct: 239 RLLKEEKAIVTDIPGTTRDVIEEVLDIEGLPIILADTAGVRRTEDVVEKIGVERTLKSIE 298 Query: 298 NADLILLLKE--------------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI 343 ADL+L + E I K+ + ID ++ D+ + +E + Sbjct: 299 RADLVLFMVESSGILQEDLEIFETIKDKRFVVLVNKIDREVKVSQDDIKRIFGKE--GIF 356 Query: 344 SSFTGEGLEELINK--IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401 S + EL+ K +LS + + ++ RH L + +L A N Sbjct: 357 ISVEHDKNLELVEKAIAHEVLSQNIEAFDSVLITNLRHKELLLKAKEFLLSAKANIFSVP 416 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LDI++ +++ A +L +ITG E ++D IFS FCIGK Sbjct: 417 LDILSIDIKNALENLYQITGKNVTEDMVDRIFSMFCIGK 455 >gi|116513181|ref|YP_812088.1| tRNA modification GTPase TrmE [Lactococcus lactis subsp. cremoris SK11] gi|123025076|sp|Q02VP7|MNME_LACLS RecName: Full=tRNA modification GTPase mnmE gi|116108835|gb|ABJ73975.1| tRNA modification GTPase trmE [Lactococcus lactis subsp. cremoris SK11] Length = 455 Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 155/457 (33%), Positives = 261/457 (57%), Gaps = 21/457 (4%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---D 57 + E +TI A+ST AI+I+RLSG ++ + + K K + AS +G + Sbjct: 3 LTQEFDTIAAISTPLGEGAIAIVRLSGTDALKIAQSVYKGKN-LAQVASHTINYGHIFEE 61 Query: 58 GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 R++D+ ++ V +P++FT ED E + HGGIAV IL+ L + RLA PGEF++RA Sbjct: 62 ERLVDEVMVSVMRAPKTFTREDIVEINTHGGIAVTQEILQLLLR-NGARLAEPGEFTKRA 120 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NG+IDL +AES+ DLI ++T+ ++++ + G LS + + + +E ++D Sbjct: 121 FLNGRIDLAQAESVMDLIRAKTDKAANIAVKQLDGSLSKMINNIRQDILESLAQVEVNID 180 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 + E +DV+ +S+ +L + + + +S K G+I+R G K I+G N GKSSL N Sbjct: 181 YPEYDDVETMTSQMLLEKTAHFEQLLENLLSTAKRGKILREGLKTAIIGRPNVGKSSLLN 240 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 L +++ AIVTDI GTTRDV+T ++ G +++ DTAGIRETDD+VE G++R+ + Sbjct: 241 QLLREEKAIVTDIAGTTRDVITEFANIGGVPLELVDTAGIRETDDLVEAIGVERSKKALA 300 Query: 298 NADLILLL----KEINSK--KEISFPKNIDFIFIGTKSDL-----YSTYTEEYDHLISSF 346 ADL+LL+ E+ K + + KN + I + K+DL + + ++ IS+ Sbjct: 301 EADLVLLVLDASLELTDKDLELLELSKNANRIVLLNKTDLPEKLDINQISGDFIR-ISAL 359 Query: 347 TGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL--D 403 E L + KI I + + + ++ S+ RH+ + + ++ L+ A+ N GL D Sbjct: 360 KNENLSAVEEKINQIFFAGEIEAKDATVLSNARHISLVEEALKALKEAN-NGLALGLPVD 418 Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +I ++ LG+ITG ++L+ +FS+FC+GK Sbjct: 419 LIQVDVTRCWQLLGEITGEAAPDELITQLFSQFCLGK 455 >gi|313679829|ref|YP_004057568.1| tRNA modification GTPase trme [Oceanithermus profundus DSM 14977] gi|313152544|gb|ADR36395.1| tRNA modification GTPase trmE [Oceanithermus profundus DSM 14977] Length = 436 Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 147/443 (33%), Positives = 245/443 (55%), Gaps = 21/443 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DGRI 60 +TI AV+T P + ++R+SGP +V + + + P R++ G G Sbjct: 7 DTIAAVATPPGPGGVGVLRVSGPQALEVAARVWRGRDPRTSPGG-RFWHGWIVDPATGEP 65 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+ +L+VF SP S+TGED E HG AV+ +L L + +R A PGEF+ RA+ N Sbjct: 66 VDEAVLLVFRSPRSYTGEDVVELQTHGSPAVLGRVLRLLLEA-GVRPAGPGEFTLRAYLN 124 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G++DL +AES+ L+ +E+E RR ++ G++ +LS D+L + + I+A LD+ E Sbjct: 125 GRMDLAQAESVLALVEAESETARRQALRGLTRKLSQKIDALADRLLDLLAHIQALLDYPE 184 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E V+ +++ V+ +L ++ + ++ G +R G ++ ++G NAGKSSL NAL Sbjct: 185 E-GVEPHAAERVIASVL---EEVEALLATADAGRRVREGARLALVGAPNAGKSSLLNALL 240 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 + A+V D PGTTRD L L++EG + DTAG+R TDD VE G++R AD Sbjct: 241 GFERALVHDRPGTTRDYLEAALEIEGVPLVAVDTAGLRRTDDPVEAAGVERALAVAREAD 300 Query: 301 LILLLKEINSKKEISFPKNIDF---IFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINK 357 LIL L ++ + P ++ + I + TK+DL + + + +S+ +G+GL+ L + Sbjct: 301 LILYL--VDRSRPRPDPPSLPWARTIRLATKADLPAAWRDPDFLEVSAHSGQGLDALRAR 358 Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLG 417 I++ L + I S +RH L++ +L L + D++ +L A+ +LG Sbjct: 359 IRARLLGGASESEVWITS-ERHREALAEARAHL----LEARGAPEDLMGMSLEAAARALG 413 Query: 418 KITGCVDVEQLLDIIFSKFCIGK 440 +ITG E+ + IF FC+GK Sbjct: 414 RITGREATEETVARIFQNFCVGK 436 >gi|218291088|ref|ZP_03495111.1| tRNA modification GTPase TrmE [Alicyclobacillus acidocaldarius LAA1] gi|218238973|gb|EED06180.1| tRNA modification GTPase TrmE [Alicyclobacillus acidocaldarius LAA1] Length = 465 Score = 228 bits (581), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 149/463 (32%), Positives = 245/463 (52%), Gaps = 29/463 (6%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP---RKASLRYFFGLD-- 57 +++TI A++T ++++I+R+SG V E + + K+ P R+ +RY ++ Sbjct: 7 EQEDTIAAIATAVGEASVAIVRVSGRGARDVGERLVRSKRGLPVKLRERGMRYGQVINPK 66 Query: 58 -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 G ++D+ +++ P P S+TGED E VHGG V +L + R+A PGEF++R Sbjct: 67 SGDVIDEAIVLWMPGPHSYTGEDVLELQVHGGTYAVEEVLSACLEA-GARMAEPGEFTKR 125 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NG+IDL +AE++ DLI ++T +L+ + G +L + + +E + Sbjct: 126 AFLNGRIDLSQAEAVIDLIRAKTAFAGKLAERQVRGRFGEAVRALRRRLLELEAHVEVTI 185 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D+ E DV++ + V++ + +I S I +LG ++R+G I+G N GKSSL Sbjct: 186 DYPEH-DVEDVACDHVVSVCEGMMGEIDSLIRSAELGRVLRDGVATAIVGRPNVGKSSLL 244 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 NAL ++D AIVTD+PGTTRDVL ++L G +++ DTAGIRET+D+VE+ G+ R+ + Sbjct: 245 NALVERDRAIVTDLPGTTRDVLEEYINLRGIPLRLIDTAGIRETEDVVERIGVARSRESM 304 Query: 297 ENADLILLL---------------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH 341 + A+L+LL+ +E + + I ID + L E Sbjct: 305 QKAELVLLVLDGSEPPSPEDEAIARESDGSRRIVVLNKIDRGIHAEAARLADELAPEGAV 364 Query: 342 LISSFTGEGLEEL----INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE 397 +S+ G GL+ L +NKI+ L+ + KR L + +R A+ Sbjct: 365 RVSAREGTGLDTLRDAIVNKIRRDLAIDLDASYMANHRQKRLLEEAKEDLRTARDAA--R 422 Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LD++A L+ A LG+ G E LL+ IFS+FC+GK Sbjct: 423 AGATLDLVAVALQSAYGKLGETIGEEAGEDLLNEIFSRFCLGK 465 >gi|182416744|ref|ZP_02948141.1| tRNA modification GTPase TrmE [Clostridium butyricum 5521] gi|237669621|ref|ZP_04529599.1| tRNA modification GTPase TrmE [Clostridium butyricum E4 str. BoNT E BL5262] gi|182379401|gb|EDT76896.1| tRNA modification GTPase TrmE [Clostridium butyricum 5521] gi|237654855|gb|EEP52417.1| tRNA modification GTPase TrmE [Clostridium butyricum E4 str. BoNT E BL5262] Length = 460 Score = 228 bits (581), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 167/463 (36%), Positives = 259/463 (55%), Gaps = 29/463 (6%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFP--RKASLRY--FFGL 56 E +TI A++T I+IIR+SG ++ + F K KK + ++RY L Sbjct: 2 REFDTICAIATPIGEGGIAIIRISGEKALEIADKIFAPKSKKDIKDMKTYTMRYGTIVDL 61 Query: 57 DGR-ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 D + I+D +L P S+TGE+ E + HGG+ N +L ++ K R+A PGEF++ Sbjct: 62 DTKDIIDDVILSYMKGPRSYTGENVIEVNCHGGVVATNRVLNQIVK-AGARIAEPGEFTK 120 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG+IDL +AE+ D+I ++TE+ + +M G LS G+ L ++ + IE Sbjct: 121 RAFLNGRIDLSQAEATMDIIKAKTELSMKSAMMQSKGALSKEIGELRKYLLNVLALIEYA 180 Query: 176 LDFSEEEDVQNFSS--KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233 +DF+E+++ ++ + I I+S + G+IIR+G IVI+G N GKS Sbjct: 181 VDFTEDDEDIVDDDLIAQIKDSITKTITRINSLLKNADEGKIIRDGLNIVIVGKPNVGKS 240 Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293 SL N+L ++ AIVTDIPGTTRD++ ++L+G +KI+DTAGIR+T+D VEK G++R+ Sbjct: 241 SLLNSLLREKRAIVTDIPGTTRDIIEEYINLDGIPIKITDTAGIRDTEDTVEKIGVERSK 300 Query: 294 LEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEEY------DH 341 ++E ADL++L+ + + + I + +I + K DL +EE Sbjct: 301 EKIEEADLVILMLDTSRALDDEDRVIIDAINDKKYIALLNKVDLECKLSEEVITSLNRTI 360 Query: 342 LISSFTGEGLEELINKIKSILSN---KFKKLPFSIPSHKRHLYH-LSQTVRYLEMASLNE 397 IS+ TG G+E L +IK++ N + L S HK+ LY L LE +LNE Sbjct: 361 EISAKTGFGIENLKEEIKNLFFNGEIDSESLIISNTRHKQALYRSLEDCNLALEKINLNE 420 Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LD+I+ + A +LG+ITG E LL+ IFS+FC GK Sbjct: 421 Y---LDLISIYITSAMRALGEITGDELEEDLLNKIFSEFCCGK 460 >gi|148269793|ref|YP_001244253.1| tRNA modification GTPase TrmE [Thermotoga petrophila RKU-1] gi|205829183|sp|A5IKF4|MNME_THEP1 RecName: Full=tRNA modification GTPase mnmE gi|147735337|gb|ABQ46677.1| tRNA modification GTPase trmE [Thermotoga petrophila RKU-1] Length = 450 Score = 228 bits (581), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 160/455 (35%), Positives = 258/455 (56%), Gaps = 26/455 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCE-FICKKKKPFPRKASLRYFFGLDGRILDKG 64 +TI AV+T AI+I+RLSGP +++ + + + + PRKA + + +G +D+ Sbjct: 2 DTIVAVATPPGKGAIAILRLSGPDSWKIVQKHLRTRSEIVPRKA-IHGWIHENGEDVDEV 60 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 ++I + SP+S+TGED E HGG VV +L+ K R+A PGEF++RAF NGK+D Sbjct: 61 VVIFYKSPKSYTGEDMVEVMCHGGPLVVKKLLDLFLK-SGARMAEPGEFTKRAFLNGKMD 119 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L AE++ DLI +++E +LS+ + G L +L + + I +LD+ +E + Sbjct: 120 LTSAEAVRDLIEAKSETSLKLSLRNLKGGLKDFVESLRRELIEVLAEIRVELDYPDEIET 179 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 ++ EV+ + +K ++ + + G ++ G+++VI+G N GKS+L N L +D Sbjct: 180 ---NTGEVVTRLERIKEKLTKELKKADAGILLNRGFRMVIVGKPNVGKSTLLNRLLNEDR 236 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLIL 303 AIVTDIPGTTRDV++ ++ + G L +I DTAG+R ET+D+VE+ GI+RT E+E AD++L Sbjct: 237 AIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVL 296 Query: 304 LLKEINS------KKEISFPKNIDFIFIGTKSDLYSTYTEEY--------DHL--ISSFT 347 + + +S +K + KN ++ + K D+ EE H+ IS+ Sbjct: 297 FVLDASSPLDEEDRKILERIKNKRYLVVINKVDVVEKINEEEIKNKLGTDRHMVKISALK 356 Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDII 405 GEGLE+L I F++ S+ ++ R L +LE A SL E +D+ Sbjct: 357 GEGLEKLEEAIYRETQEIFERGSDSLITNLRQKQLLENVKGHLEDAIKSLKE-GMPVDMA 415 Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + +L A L ++TG E LLD IFS FC+GK Sbjct: 416 SIDLERALSLLDEVTGRSFREDLLDTIFSNFCVGK 450 >gi|299471091|emb|CBN78950.1| TrmE, organellal GTPase involved in tRNA modification [Ectocarpus siliculosus] Length = 790 Score = 228 bits (581), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 128/350 (36%), Positives = 201/350 (57%), Gaps = 49/350 (14%) Query: 5 KETIFAVSTG-ALPSAISIIRLSGPSCFQVCEFIC------------------------- 38 ++TIFA++TG A P+ ++++R+SGP QV + + Sbjct: 195 EDTIFALATGNAGPAGVAVVRISGPLSAQVLQALTSAANLSSVTAAEASAGGDAGVAASA 254 Query: 39 -----------KKKKPFP--RKASLRYFF-GLDGRILDKGLLIVFPSPESFTGEDSAEFH 84 ++ PFP R+A +R + G +LD+ L++ P P SFTGED+ E H Sbjct: 255 APAVVNGGGAGRRLPPFPAARRAVVRRLYDPATGDLLDEALVLWMPGPRSFTGEDTVELH 314 Query: 85 VHGGIAVVNGILEELAKMP------NLRLANPGEFSRRAFENGKIDLLEAESLADLISSE 138 HG AV+NG+L+ LA M +RLA GEF++RA+ NG++DL E LADLI+++ Sbjct: 315 THGSRAVINGVLDALAGMGAASGMRRVRLAERGEFTQRAYGNGRMDLTGVEGLADLIAAD 374 Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE-EEDVQNFSS-KEVLNDI 196 T QR+ +++ M G L +Y +W +L + EA +DF + EEDV ++ ++ + Sbjct: 375 TAAQRKQALKQMGGALRDMYEEWRHQLKGCLAHAEAVIDFGDDEEDVGGDAAFAAMMPRV 434 Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 L +I H+ G GEI+R+G ++ I+G NAGKSSL N LA + AIV+ + GTTRD Sbjct: 435 RGLAAEIDRHLRDGGRGEIVRSGVRVAIVGPPNAGKSSLLNLLAARPAAIVSPVAGTTRD 494 Query: 257 VLTIDLDLEGYLVKISDTAGI-RETDDIVEKEGIKRTFLEVENADLILLL 305 V+ + +D+ G V +SDTAG+ + TDD +E+EG++R V+NA L + + Sbjct: 495 VVEVQMDIAGLPVTLSDTAGLPKATDDEIEREGMRRARSAVDNAHLAIFV 544 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 37/101 (36%), Positives = 57/101 (56%), Gaps = 5/101 (4%) Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLP---FSIPSHKRHLYHLSQTVRYLEMASLNEKD 399 +S T EGL+ + +++ + ++F+ + + +RH H+ + L A Sbjct: 692 LSCKTKEGLDGFMEHLEAEVRSRFQGAADDESPLITRRRHRQHVEACLLALRAA--QRPQ 749 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LD+ AE LR+AS LG+ITG V VE+LLD+IF FCIGK Sbjct: 750 MPLDLAAEELRIASSELGRITGAVGVEELLDVIFRDFCIGK 790 >gi|188587519|ref|YP_001919064.1| tRNA modification GTPase TrmE [Natranaerobius thermophilus JW/NM-WN-LF] gi|205415781|sp|B2A470|MNME_NATTJ RecName: Full=tRNA modification GTPase mnmE gi|179352206|gb|ACB86476.1| tRNA modification GTPase TrmE [Natranaerobius thermophilus JW/NM-WN-LF] Length = 458 Score = 228 bits (581), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 163/461 (35%), Positives = 258/461 (55%), Gaps = 30/461 (6%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DGR 59 ++TI A+ST I++IR+SGP + I + + + + + G R Sbjct: 3 EDTIAALSTPPGEGGIAVIRVSGPDSQNKVKQIFRSSRTDGNFNNKKMYHGQIVSPETNR 62 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 ILD+ L++ P ++T ED E H HGG+ V IL+ L +R A PGEF++RAF Sbjct: 63 ILDEVLVVFMNKPYTYTCEDVVEIHCHGGMVPVKEILQLLFSY-GIRPAEPGEFTKRAFL 121 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NG++DL +AE + DLI+S+T + +++ + G L + D L + + +EA +DF Sbjct: 122 NGRLDLTQAEGVMDLITSKTNNLKNVAINQLQGNLKQKIDRLRDDLVSVMANLEARIDFP 181 Query: 180 EEE-DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 +E+ DV+++ E+ + I K DI++ I+ G+IIR G K VI+G N GKSSL N Sbjct: 182 DEDIDVEDYH--ELKHRIDNAKVDINNLIASYDKGKIIREGIKTVIVGRPNVGKSSLLNL 239 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L ++ AIVT+IPGTTRDVL ++L+G ++I DTAGIRE++D VE+ G+KRT +E Sbjct: 240 LLGEERAIVTEIPGTTRDVLEEVINLKGIPLRIIDTAGIRESEDKVEQIGVKRTRDSMEQ 299 Query: 299 ADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTY-TEEYDHL------- 342 AD+IL++ I+S +E+S ++ + + K+DL+ +E D L Sbjct: 300 ADIILVV--IDSSQELSQEDKQILTMAQDKTSLLVLNKTDLHEKLDIDEIDKLVSQIPKV 357 Query: 343 -ISSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-D 399 IS+ EGL++L I + + + + + RH + L + L A N K + Sbjct: 358 RISALKEEGLDKLEEHISELVFGGQVMQTEELVITKARHFHSLDKVKEALSSAEENIKAE 417 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D+IA +++ A LG+ITG E+L+D IF+ FCIGK Sbjct: 418 MSEDLIAIDIKEAYDYLGEITGETASEELVDRIFNDFCIGK 458 >gi|312797626|ref|YP_004030548.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase [Burkholderia rhizoxinica HKI 454] gi|312169401|emb|CBW76404.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase [Burkholderia rhizoxinica HKI 454] Length = 493 Score = 228 bits (581), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 152/467 (32%), Positives = 240/467 (51%), Gaps = 32/467 (6%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLS-----GPSCFQVCEFICKKKKPFPRKASLRYFFG 55 M + + I A++T I ++R+S + ++ + + + + PR+A FF Sbjct: 32 MQTDSDPIVAIATAPGRGGIGVVRVSFGAAGADAAVRLMDALFRDRLA-PRRAVYVPFFD 90 Query: 56 LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP---NLRLANPGE 112 G LD+G+ + FP+P S+TGE E HGG V+ +L+ LRLA PGE Sbjct: 91 AAGVPLDRGIGLYFPAPHSYTGEHVVELQGHGGPVVLQLVLQRCLDAGCDIGLRLAQPGE 150 Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172 F+RRAF N K+DL +AE++ADLI + TE R + + G S + +D++ +R + Sbjct: 151 FTRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLEGAFSRDIHRLVDEVVGLRMLV 210 Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232 EA LDF EEE + + + + +++ +++ K G ++R G +V+ G N GK Sbjct: 211 EATLDFPEEE-IDFLEAADARGKLARIRDALAAVQRDAKQGALLREGLSVVLAGQPNVGK 269 Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292 SSL NAL ++AIVT I GTTRD + + +EG + + DTAG+R+T D VE+ GI R+ Sbjct: 270 SSLLNALVGAELAIVTPIAGTTRDKVAQTIQIEGIPLHVIDTAGLRDTQDEVERLGIARS 329 Query: 293 FLEVENADLILLLKEINSKKEI-------SFPKNIDFIFIGTKSDLYSTYTEEYDH---- 341 + E+E AD++L L + + FP + + I K DL + D Sbjct: 330 WNEIERADVVLHLLDARDGMSVEDHAIAARFPAGVPVVRIFNKIDLAGVEPDVRDAGDSA 389 Query: 342 ----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL----EMA 393 +S+ G++ L ++ I + + + +RHL L +L E A Sbjct: 390 AREVRLSAKAALGIDLLRAELLRIAGWQAGAESVYL-ARERHLRALRAAGEHLATAAEHA 448 Query: 394 SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + N + LD+ AE LRLA L ITG + LL +IFS+FCIGK Sbjct: 449 ARNAQ--ALDLFAEELRLAQEQLNSITGEFTSDDLLGVIFSRFCIGK 493 >gi|212640677|ref|YP_002317197.1| tRNA modification GTPase TrmE [Anoxybacillus flavithermus WK1] gi|212562157|gb|ACJ35212.1| tRNA modification GTPase, TrmE [Anoxybacillus flavithermus WK1] Length = 464 Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 154/463 (33%), Positives = 251/463 (54%), Gaps = 29/463 (6%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL----- 56 E +TI A+ST AI+I+RLSG ++ + F+ K S +G Sbjct: 5 EFDTIAAISTPMGEGAIAIVRLSGDEAIKIVDQLFVGVGGKKLKDVPSHTIHYGHIVHPE 64 Query: 57 DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 +++ ++ V +P++FT ED E + HGG+ VN +L+ L RLA PGEF++R Sbjct: 65 TKETIEEVMVTVMKAPKTFTREDVVEINCHGGLVSVNRVLQ-LVLAYGARLAQPGEFTKR 123 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NG+IDL +AE++ DLI ++T+ +++ M G LS L + + + +E ++ Sbjct: 124 AFLNGRIDLSQAEAVIDLIRAKTDRAMAVALNQMEGRLSKLIRRLRQTILETLAHVEVNI 183 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D+ E +DV+ + + +L +KN+I + + G+++R+G VI+G N GKSSL Sbjct: 184 DYPEYDDVEEMTHRLLLEKATEVKNEIERLLQTAQQGKVLRDGLATVIIGRPNVGKSSLL 243 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N+LA ++ AIVTDIPGTTRDV+ +++ G +++ DTAGIRET+DIVE+ G++R+ + Sbjct: 244 NSLAHENRAIVTDIPGTTRDVIEEYVNVRGVPLRLLDTAGIRETEDIVERIGVERSRKVL 303 Query: 297 ENADLILLLKEINSKKEI------SFPKNIDFIFIGTKSDLYSTYTEEYDHL-------- 342 + ADLILL+ N + K +D I I K+DL + D + Sbjct: 304 KEADLILLVLNYNEPLTVEDEQLFEAVKGMDVIVIVNKTDLPKQI--DMDRVKQLAQGLP 361 Query: 343 ---ISSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-E 397 S G+++L I S+ S + + S+ RH+ L+Q + +E A E Sbjct: 362 IITTSLLEDRGIDQLEEAIASLFFSGDVEARDLTYVSNSRHIALLTQAKKAIEEAIHGIE 421 Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +DI+ +L A LG+I G E L+D +F++FC+GK Sbjct: 422 AGMPIDIVQIDLTRAWELLGEIVGDTVHESLIDQLFAQFCLGK 464 >gi|193214522|ref|YP_001995721.1| tRNA modification GTPase TrmE [Chloroherpeton thalassium ATCC 35110] gi|193087999|gb|ACF13274.1| tRNA modification GTPase TrmE [Chloroherpeton thalassium ATCC 35110] Length = 483 Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 155/467 (33%), Positives = 255/467 (54%), Gaps = 36/467 (7%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK--------KKPFPRKASLRYFFGLD 57 E I AV+T A+SI+R++G V + + +K A F L Sbjct: 21 EAIAAVATPVGEGALSIVRMTGEGVLAVADKVFRKIDGDNFSFASCRSHTAHYGRFNNLA 80 Query: 58 GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 G ++D+ + IV+ +P SFT ED EF+ HGG+ V +L+ L + RLA PGEF+RRA Sbjct: 81 GELIDEVMAIVYRAPRSFTTEDMVEFNCHGGVIVTETVLQTLLE-AGCRLAEPGEFTRRA 139 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NG+IDL++AE++ ++I ++T+ R ++ + G+LS G +L + S +E +LD Sbjct: 140 FLNGRIDLVQAEAVGEMIHAKTQTAYRSAISQLKGDLSLKLGSLRTELLNACSMLELELD 199 Query: 178 FSEEEDVQNFSSKEVLNDIL-FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 FSEE DV+ F S+E L+ L + ++ + + + G+ ++ G I+G NAGKS+L Sbjct: 200 FSEE-DVE-FQSREALSARLSAMATELEALANTFRFGKFVKEGVATAIVGRPNAGKSTLL 257 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 NAL K+ AIV+ +PGTTRD + L+G ++ DTAG+R +DD +E EGI+R++ ++ Sbjct: 258 NALLGKERAIVSHVPGTTRDYIEESFVLDGVPFRLIDTAGLRLSDDALESEGIRRSYEKI 317 Query: 297 ENADLILLLKEINSK------KEI----SFPKNIDFIFIGTKSDL------YSTYTEEYD 340 ADL++ + + K EI + F + K D ++ +E + Sbjct: 318 TEADLVIFVHDATEKITEAERTEILALRKKSAHAKFFIVANKIDCVTGAPNFANAPDEQE 377 Query: 341 HL----ISSFTGEGLEELINKIKSILSNKFKKLPFS--IPSHKRHLYHLSQTVRYLEMA- 393 H+ IS+ EGL EL K+K+ L+ +KL + +++RH + + L++A Sbjct: 378 HIEVVPISALRREGLSELRQKMKT-LATGLEKLNEGSLVITNQRHFEAIKNALERLQVAR 436 Query: 394 SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L + ++IA +LR +G I G V + +L+ IF +FCIGK Sbjct: 437 ELLIEGAETELIASDLREVLHQIGSIIGKVTTDDILNNIFDRFCIGK 483 >gi|149925382|ref|ZP_01913646.1| tRNA modification GTPase TrmE [Limnobacter sp. MED105] gi|149825499|gb|EDM84707.1| tRNA modification GTPase TrmE [Limnobacter sp. MED105] Length = 459 Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 159/458 (34%), Positives = 250/458 (54%), Gaps = 31/458 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQV---CEFICKKKKPFPRKASLRYFFGLDGRILD 62 + I A++T + ++R S PS C C K P PR A+L +D +D Sbjct: 10 DPIVAIATAPGKGGVGVVRFSFPSSSSFQAFCAAFCGKL-PKPRMATLLTLRDVDQHAID 68 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEE---LAKMPN--LRLANPGEFSRRA 117 +G+ ++F +P SFTGE EF HGG AV+ G++ +A+ N LR A GEF++RA Sbjct: 69 EGIALLFNAPASFTGEHVLEFQGHGGQAVLQGVVAHALAVARQLNIPLRHAMAGEFTQRA 128 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F N K+DL +AE++ADLI + + + + +SG S + D++ H+R +EA LD Sbjct: 129 FLNDKLDLAQAEAVADLIDAGSMATAKAAAASLSGVFSRQVNELADRIVHLRLLLEATLD 188 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 F EEE ++ + + + N ++ + G R+G +IV++G N GKSSL N Sbjct: 189 FPEEE-IEFLEKADAKGQLAGILNAHGQLLNAAQEGVKFRDGLQIVLVGEPNVGKSSLLN 247 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 ALA +++AIV+ I GTTRD + +L++ G + + DTAG+RET D VE+ GI+RT V+ Sbjct: 248 ALAGEEIAIVSAIAGTTRDRIKQELNIRGIPLVLVDTAGLRETVDEVERIGIERTRKSVQ 307 Query: 298 NADLILLLKEINS------KKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL--ISSFTGE 349 ADL+L+LK+ + + P ++ + + K DL + + +S+ G+ Sbjct: 308 EADLLLILKDATQGPHDALHQHLELPVHLPTLTVLNKVDLLPEAPQLLQDVLPVSAKNGQ 367 Query: 350 GLEELINKIKSILSNKFKKLPFSIPSH-----KRHLYHLSQTVRYLEMAS--LNEKDCGL 402 GLE+L + I + + P H +RH+ L ++L A + D L Sbjct: 368 GLEQLKDAILAKVGIAHT------PDHGFMARQRHVDALLVCGQHLVAAHEFAQQDDRIL 421 Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D+ AE LRLA +LG+ITG + + LL +IFS+FCIGK Sbjct: 422 DLFAEELRLAHDALGEITGRMLPDDLLGLIFSRFCIGK 459 >gi|205371919|ref|ZP_03224739.1| tRNA modification GTPase TrmE [Bacillus coahuilensis m4-4] Length = 461 Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 154/461 (33%), Positives = 256/461 (55%), Gaps = 25/461 (5%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDG----- 58 E +TI A+ST AI+I+RLSG ++ + + +K P K + + Sbjct: 2 EFDTIAAISTPMGEGAIAIVRLSGDQAVEIADRVFRKPNSQPLKDQISHTIHYGNIIEPE 61 Query: 59 --RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 +++++ ++ + P +FT ED E + HGGI VN +L+ L RLA PGEF++R Sbjct: 62 TEQVIEEVMVSLMRGPRTFTREDVVEINCHGGIVSVNKVLQ-LVVRQGARLAEPGEFTKR 120 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NG+IDL +AE++ DLI ++T+ +++ M G LSSL + ++ + +E ++ Sbjct: 121 AFLNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSSLIRKLRQEILETLAHVEVNI 180 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D+ E +DV+ + + +L +K++I + + G+I+R G VI+G N GKSSL Sbjct: 181 DYPEYDDVEEMTHRVLLEKSSKVKHEIELLLRTSEQGKILREGLSTVIIGRPNVGKSSLL 240 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N+L ++ AIVTDIPGTTRDV+ +++ G +++ DTAGIRET+DIVE+ G++++ + Sbjct: 241 NSLVHENKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDIVERIGVEKSRQVL 300 Query: 297 ENADLILLL----KEINSKKEISFP--KNIDFIFIGTKSDLYSTYTEEY-------DHLI 343 + ADL+LL+ E + E F + +D I I K+DL E L+ Sbjct: 301 KEADLLLLVLNHGDEFTEEDENLFKAVEGMDVIVIVNKTDLPQVINMEKVRELSKNHRLV 360 Query: 344 SSFTGE--GLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKD 399 ++ E G++EL I S+ S + + S+ RH+ L+Q + +E A E Sbjct: 361 TTSLKEEQGIDELEEAIASLFFSGSIESGDLTYVSNSRHIALLTQAKQAIEEAIDGVEMG 420 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +DI+ +L + LG+I G E L+D +FS+FC+GK Sbjct: 421 TPIDIVQIDLTRSWELLGEIIGDSVHESLIDQLFSQFCLGK 461 >gi|46909000|ref|YP_015389.1| tRNA modification GTPase TrmE [Listeria monocytogenes serotype 4b str. F2365] gi|47093270|ref|ZP_00231041.1| tRNA modification GTPase TrmE [Listeria monocytogenes str. 4b H7858] gi|290891992|ref|ZP_06554989.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL J2-071] gi|67461967|sp|Q71VV0|MNME_LISMF RecName: Full=tRNA modification GTPase mnmE gi|46882273|gb|AAT05566.1| tRNA modification GTPase TrmE [Listeria monocytogenes serotype 4b str. F2365] gi|47018344|gb|EAL09106.1| tRNA modification GTPase TrmE [Listeria monocytogenes str. 4b H7858] gi|290558586|gb|EFD92103.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL J2-071] Length = 457 Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 150/461 (32%), Positives = 249/461 (54%), Gaps = 29/461 (6%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRI 60 E +TI A+ST AI+IIRLSGP Q+ + I K S +G DG + Sbjct: 2 EFDTIAAISTPPGEGAIAIIRLSGPEAIQIADRIFYAKNSLSEAESHTIHYGHIKEDGEV 61 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +++ ++ V +P +FT ED E + HGGI VN +L+ L + LA PGEF++RAF N Sbjct: 62 IEEVMVTVMRAPRTFTREDVVEINAHGGIVSVNRVLQLLLR-NGANLAEPGEFTKRAFLN 120 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G+IDL +AE++ DLI ++T+ +++ M G LS L ++ + +E ++D+ E Sbjct: 121 GRIDLSQAEAVMDLIRAKTDRAMGVAIRQMDGNLSRLIRNLRQEILDALAQVEVNIDYPE 180 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 +DV+ + + +L ++ + + G+I+R G I+G N GKSSL N L Sbjct: 181 YDDVEEMTQRMLLEKTELVRASVEQLLQTASQGKILREGLATAIIGRPNVGKSSLLNQLI 240 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 +++ AIVTDI GTTRD++ +++ G +++ DTAGIRET+DIVEK G++R+ + +AD Sbjct: 241 QEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETEDIVEKIGVERSRKALADAD 300 Query: 301 LILLLKEINSKKEISFPKNI--------DFIFIGTKSDLYSTYTEEYDHL---------- 342 ILL+ +N +E++ +++ + K+DL + + D + Sbjct: 301 FILLV--LNQNEELTVEDEALFEAAAGHNYVVVLNKTDLETKL--DIDRVRELAGENPIV 356 Query: 343 -ISSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKD 399 S EGLE L IK++ + + S+ RH+ L Q + L + + Sbjct: 357 STSLVNDEGLEALEEAIKTLFFAGDIDAGDATYVSNVRHIALLHQALEALNGVTTGIQLG 416 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +DI+ ++ A LG+ITG ++LLD +F++FC+GK Sbjct: 417 MPVDIVQIDMTRAWDLLGEITGDSVQDELLDQLFNQFCLGK 457 >gi|90194086|gb|ABD92604.1| ThdF [Actinobacillus minor NM305] Length = 436 Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 149/437 (34%), Positives = 244/437 (55%), Gaps = 29/437 (6%) Query: 19 AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGE 78 + I+R+SGP +V + + K+ PR A+ F DG +LD+G+ + F +P SFTGE Sbjct: 7 GVGILRVSGPLANEVAKAVVGKELK-PRLANYLPFMDTDGTVLDQGIALFFKAPNSFTGE 65 Query: 79 DSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSE 138 D E HGG +++ +L+ + + +R+A GEFS +AF N K+DL +AE++ADLI + Sbjct: 66 DVLELQGHGGQVILDLLLKRILAVKGVRIARAGEFSEQAFLNDKLDLAQAEAIADLIDAT 125 Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LND 195 +E R +++ + GE S+ + +D + ++R+++EA +DF +EE + + ++ LND Sbjct: 126 SEQAARSALKSLQGEFSNKVNELVDSVIYLRTYVEAAIDFPDEE-IDFLADGKIEAKLND 184 Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255 I+ +++ + K G I+R G K+V+ G NAGKSSL NALA ++ AIVT+I GTTR Sbjct: 185 II---TQLANVRKEAKQGSILREGMKVVMPGKPNAGKSSLLNALAGREAAIVTNIAGTTR 241 Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 DVL + ++G + I DTAG+R+ D VE+ GI+R + E+ AD +LL+ + + ++ Sbjct: 242 DVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIQRAWDEIAQADHVLLMIDSSEQQADV 301 Query: 316 F-----------PKNIDFIFIGTKSDLY--STYTEEYDHL----ISSFTGEGLEELINKI 358 F P+NI I K DL S E+ D +S+ T G++ L + Sbjct: 302 FKTEWAEFLAKLPQNIPVTVIRNKVDLSGESEGLEQQDGFTLIRLSAQTKVGVDLLREHL 361 Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLASVSL 416 K + + + +RHL L +LE L + G +++AE LR+ +L Sbjct: 362 KQSMGYQ-SSTEGGFLARRRHLQALETAAEHLERGHVQLTQFFAG-ELLAEELRMVQNAL 419 Query: 417 GKITGCVDVEQLLDIIF 433 +ITG + LL IF Sbjct: 420 SEITGQFTSDDLLGNIF 436 >gi|255713564|ref|XP_002553064.1| KLTH0D08074p [Lachancea thermotolerans] gi|238934444|emb|CAR22626.1| KLTH0D08074p [Lachancea thermotolerans] Length = 497 Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 159/480 (33%), Positives = 260/480 (54%), Gaps = 51/480 (10%) Query: 7 TIFAVSTG-ALPSAISIIRLSGPSCFQVC-EFICKKKKPFPRKASLRYFF---GLDGRIL 61 TI+A+ST SAI+++R++G C + + + P PR+ SLR + G +L Sbjct: 23 TIYALSTSPGQRSAIAVVRVTGSHCKHIYYQLTGAQSPPVPRRCSLRNLYHAAGAKKNLL 82 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN------LRLANPGEFSR 115 D L++ F +P+SFTGED E H+HGG AV+ +L + + + +R A PGEFS+ Sbjct: 83 DSSLVLFFENPKSFTGEDMLELHLHGGRAVIKSVLGAIQSLGDQKKGLDIRYAQPGEFSQ 142 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF+NG++DL +AE +ADLI +ETE QRR +++ G+ +L+ W ++ + + A Sbjct: 143 RAFQNGRMDLTQAEGVADLIDAETETQRRSALQSFRGQNKALFDGWRSQIVSGIAQLTAI 202 Query: 176 LDFSEEEDVQNFSS--KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233 +DF E+ ++++ + V +++ L +I + + + I++NG K+ +LG NAGKS Sbjct: 203 IDFGEDAEIEDTQAILDSVRRNMMNLDKEIKLFVLKIRRSSILQNGVKVALLGSPNAGKS 262 Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRT 292 SL N + D +IV+D PGTTRD + + +D++GY V + DTAGIR E++D +E +GIKR Sbjct: 263 SLLNCITNDDTSIVSDTPGTTRDAIDVPIDVDGYKVVLCDTAGIRSESEDQIEIQGIKRA 322 Query: 293 FLEVENADLILLLKEINSKKEIS----------FPKNIDFIFIGTKSDLYST------YT 336 + +DL++L+ + ++ P N I + K+DL T Sbjct: 323 KAKGSESDLVILVIDPTKTPLVTEDLQRFVKEQIPHNQVIIAV-NKTDLVDTKGLKNVRQ 381 Query: 337 EEY-----DHLISSFTGEGLEELINKIKSILSNKFKKL--------PFSIPSHKRHLYHL 383 E Y D I S + E + N +K LS+ F+ L P + + + Sbjct: 382 EVYQIFNGDFPIKSVSCTNFEGIENLVKE-LSHVFQGLSGTSHDSDPLIVSNRTEEILTK 440 Query: 384 SQTVRYLEMASLNEKDCGLDII--AENLRLASVSLGKITGC-VDVEQLLDIIFSKFCIGK 440 E S + D++ ENL A+ +GKITG V VE++L ++FS+FC+GK Sbjct: 441 DVMFGLQEFLSFPGTE---DVVMACENLAYAAEGIGKITGASVGVEEVLGVVFSRFCVGK 497 >gi|302393075|ref|YP_003828895.1| tRNA modification GTPase trmE [Acetohalobium arabaticum DSM 5501] gi|302205152|gb|ADL13830.1| tRNA modification GTPase trmE [Acetohalobium arabaticum DSM 5501] Length = 463 Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 155/466 (33%), Positives = 263/466 (56%), Gaps = 36/466 (7%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK-KKPFPRKASLRYFFGLDG----- 58 K+TI A+ST I I+R+SGP ++ + I K ++P + + + G Sbjct: 4 KDTIAAISTAVGEGGIGIVRISGPEAIEIADKIFKSYQQPDKKLNKVDTYTAHYGHIIKP 63 Query: 59 ---RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 ++LD+ + +V +P+++T ED E + HGG+ + ILE L RLA+PGEF++ Sbjct: 64 ETEQVLDEVISLVMKAPKTYTKEDVVEINCHGGMVPLQKILE-LVLDVGARLADPGEFTK 122 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG+IDL +AE++ D+I+S+TE +M+ + G LS K+ + + +EA Sbjct: 123 RAFLNGRIDLSQAEAIMDVINSQTEAGLEAAMDQLEGGLSDQINNISQKILRLLANLEAS 182 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +DF E+E +++F+S+E+ ++ + ++I ++ K G I++ G + I+G N GKSSL Sbjct: 183 IDFPEDE-IEDFNSEELEKRVIEILSEIEDLLATSKQGRIVKEGIQTAIIGKPNVGKSSL 241 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 NAL +++ AIVT++PGTTRDV+ ++++G +KI DTAGIRE ++ VEK GI+++ Sbjct: 242 LNALLRENRAIVTEVPGTTRDVIEEVINIDGIPLKIIDTAGIREAENEVEKIGIEKSEKF 301 Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDL-----YSTYTEEYD--HL 342 ++ ADL+LL+ + + +K I + D I + K+DL EE D + Sbjct: 302 LKRADLVLLVLDAHCGITDEDRKIIGLAEGKDTIIVVNKTDLEPKLAVEELKEELDMEAV 361 Query: 343 ISSFTGEG-----LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN- 396 + + EG LEELI+ + + + K ++ ++ RH + Y +M + Sbjct: 362 VETSATEGIGIKELEELISDM--VFGGQIKSTDQTLITNLRHKEAIEDA--YEDMNRVKE 417 Query: 397 --EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E+D D + +L+ A LGKITG E ++D IF+ FC+GK Sbjct: 418 TVEQDLPADFVTIDLKSALEKLGKITGDTVDEDIIDRIFADFCLGK 463 >gi|28209869|ref|NP_780813.1| tRNA modification GTPase TrmE [Clostridium tetani E88] gi|32171803|sp|Q899S2|MNME_CLOTE RecName: Full=tRNA modification GTPase mnmE gi|28202304|gb|AAO34750.1| thiophene and furan oxidation protein thdF [Clostridium tetani E88] Length = 459 Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 162/459 (35%), Positives = 257/459 (55%), Gaps = 28/459 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--------KPFPRKASLRYFFGLD 57 +TI A+ST ISIIR+SG + + K K KP+ K + D Sbjct: 5 DTIAAISTVLGEGGISIIRISGDKSLAIVNKLFKAKNGKDILDMKPYTMKYG--HIIEQD 62 Query: 58 GR-ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 + ILD+ L+ +P SFT ED+ E + HGG+ I +E+ K +R+A PGEF++R Sbjct: 63 TKNILDEVLISYMKAPRSFTAEDTVEINCHGGVTPTKKIFQEVIK-AGVRVAEPGEFTKR 121 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NG+IDL +AE++ D+I S+TE+ + ++ G++S + L + IEA + Sbjct: 122 AFLNGRIDLTQAEAVIDIIRSKTELSMKSAVSQSIGKVSEEINVLRENLIETIAHIEATV 181 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D+ EE D++ +S +V I + ++ + + G+IIR G +VI+G N GKSSL Sbjct: 182 DYPEE-DLEEITSSQVQEKIEKIIEELERLLDTSEEGKIIREGLDVVIVGKPNVGKSSLL 240 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 NAL + AIVT+IPGTTRDV+ ++L+G +KI DTAGIRET+D+VEK G++R+ ++ Sbjct: 241 NALLSEKRAIVTEIPGTTRDVIEEYINLDGIPIKIIDTAGIRETEDLVEKIGVERSKEKI 300 Query: 297 ENADLILLLKEINSK------KEISFPKNIDFIFIGTKSDLYSTYTEE-------YDHL- 342 ADL++L+ + ++K + I + K+ +I + KSDL S + Y+ + Sbjct: 301 NEADLVILVLDSSNKLNDEDYEIIEYIKDKKYITLLNKSDLESKINKSDLEDLKLYNIIE 360 Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCG 401 IS+ G GLE+L IK + + I ++ RH L + A E Sbjct: 361 ISAKMGFGLEDLKEYIKDLFFKGDIQTDSIIITNTRHKEALIRAKESCNTALKALENTLA 420 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D+ + +++ A +SLG+ITG E ++D IFS+FC+GK Sbjct: 421 IDLASIDIKNAWLSLGEITGDTLEEDIIDKIFSEFCLGK 459 >gi|16804848|ref|NP_466333.1| tRNA modification GTPase TrmE [Listeria monocytogenes EGD-e] gi|47095618|ref|ZP_00233226.1| tRNA modification GTPase TrmE [Listeria monocytogenes str. 1/2a F6854] gi|224502775|ref|ZP_03671082.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL R2-561] gi|254899731|ref|ZP_05259655.1| tRNA modification GTPase TrmE [Listeria monocytogenes J0161] gi|254913066|ref|ZP_05263078.1| tRNA modification GTPase trmE [Listeria monocytogenes J2818] gi|254937447|ref|ZP_05269144.1| tRNA modification GTPase TrmE [Listeria monocytogenes F6900] gi|255028100|ref|ZP_05300051.1| tRNA modification GTPase TrmE [Listeria monocytogenes LO28] gi|21363006|sp|Q8Y3M4|MNME_LISMO RecName: Full=tRNA modification GTPase mnmE gi|16412311|emb|CAD01024.1| lmo2811 [Listeria monocytogenes EGD-e] gi|47016048|gb|EAL06973.1| tRNA modification GTPase TrmE [Listeria monocytogenes str. 1/2a F6854] gi|258610049|gb|EEW22657.1| tRNA modification GTPase TrmE [Listeria monocytogenes F6900] gi|293591067|gb|EFF99401.1| tRNA modification GTPase trmE [Listeria monocytogenes J2818] Length = 457 Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 150/461 (32%), Positives = 249/461 (54%), Gaps = 29/461 (6%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRI 60 E +TI A+ST AI+IIRLSGP Q+ + I K S +G DG + Sbjct: 2 EFDTIAAISTPPGEGAIAIIRLSGPEAIQIADRIFYAKNSLSEAESHTIHYGHIKEDGEV 61 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +++ ++ V +P +FT ED E + HGGI VN +L+ L + LA PGEF++RAF N Sbjct: 62 IEEVMVTVMRAPRTFTREDVVEINAHGGIVSVNRVLQLLLR-NGANLAEPGEFTKRAFLN 120 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G+IDL +AE++ DLI ++T+ +++ M G LS L ++ + +E ++D+ E Sbjct: 121 GRIDLSQAEAVMDLIRAKTDRAMGVAIRQMDGNLSRLIRNLRQEILDALAQVEVNIDYPE 180 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 +DV+ + + +L ++ + + G+I+R G I+G N GKSSL N L Sbjct: 181 YDDVEEMTQRMLLEKTELVRASVEQLLRTASQGKILREGLATAIIGRPNVGKSSLLNQLI 240 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 +++ AIVTDI GTTRD++ +++ G +++ DTAGIRET+DIVEK G++R+ + +AD Sbjct: 241 QEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETEDIVEKIGVERSRKALADAD 300 Query: 301 LILLLKEINSKKEISFPKNI--------DFIFIGTKSDLYSTYTEEYDHL---------- 342 ILL+ +N +E++ +++ + K+DL + + D + Sbjct: 301 FILLV--LNQNEELTVEDEALFEAAAGHNYVVVLNKTDLETKL--DIDRVRELAGENPIV 356 Query: 343 -ISSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKD 399 S EGLE L IK++ + + S+ RH+ L Q + L + + Sbjct: 357 STSLVNDEGLEALEEAIKTLFFAGDIDAGDATYVSNVRHIALLHQALEALNGVTTGIQLG 416 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +DI+ ++ A LG+ITG ++LLD +F++FC+GK Sbjct: 417 MPVDIVQIDMTRAWDLLGEITGDSVQDELLDQLFNQFCLGK 457 >gi|217965982|ref|YP_002351660.1| tRNA modification GTPase TrmE [Listeria monocytogenes HCC23] gi|226225361|ref|YP_002759468.1| GTPase [Listeria monocytogenes Clip81459] gi|254824824|ref|ZP_05229825.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL J1-194] gi|254930915|ref|ZP_05264274.1| tRNA modification GTPase TrmE [Listeria monocytogenes HPB2262] gi|284800302|ref|YP_003412167.1| tRNA modification GTPase TrmE [Listeria monocytogenes 08-5578] gi|284993487|ref|YP_003415255.1| tRNA modification GTPase TrmE [Listeria monocytogenes 08-5923] gi|217335252|gb|ACK41046.1| tRNA modification GTPase TrmE [Listeria monocytogenes HCC23] gi|225877823|emb|CAS06538.1| Putative GTPase [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|284055864|gb|ADB66805.1| tRNA modification GTPase TrmE [Listeria monocytogenes 08-5578] gi|284058954|gb|ADB69893.1| tRNA modification GTPase TrmE [Listeria monocytogenes 08-5923] gi|293582461|gb|EFF94493.1| tRNA modification GTPase TrmE [Listeria monocytogenes HPB2262] gi|293594064|gb|EFG01825.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL J1-194] gi|307572401|emb|CAR85580.1| tRNA modification GTPase [Listeria monocytogenes L99] gi|328469044|gb|EGF39998.1| tRNA modification GTPase TrmE [Listeria monocytogenes 220] gi|332313241|gb|EGJ26336.1| tRNA modification GTPase mnmE [Listeria monocytogenes str. Scott A] Length = 457 Score = 227 bits (579), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 150/459 (32%), Positives = 251/459 (54%), Gaps = 25/459 (5%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRI 60 E +TI A+ST AI+IIRLSGP Q+ + I K S +G DG + Sbjct: 2 EFDTIAAISTPPGEGAIAIIRLSGPEAIQIADRIFYAKNSLSEAESHTIHYGHIKEDGEV 61 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +++ ++ V +P +FT ED E + HGGI VN +L+ L + LA PGEF++RAF N Sbjct: 62 IEEVMVTVMRAPRTFTREDVVEINAHGGIVSVNRVLQLLLR-NGANLAEPGEFTKRAFLN 120 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G+IDL +AE++ DLI ++T+ +++ M G LS L ++ + +E ++D+ E Sbjct: 121 GRIDLSQAEAVMDLIRAKTDRAMGVAIRQMDGNLSRLIRNLRQEILDALAQVEVNIDYPE 180 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 +DV+ + + +L ++ + + G+I+R G I+G N GKSSL N L Sbjct: 181 YDDVEEMTQRMLLEKTELVRASVEQLLQTASQGKILREGLATAIIGRPNVGKSSLLNQLI 240 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 +++ AIVTDI GTTRD++ +++ G +++ DTAGIRET+DIVEK G++R+ + +AD Sbjct: 241 QEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETEDIVEKIGVERSRKALADAD 300 Query: 301 LILLLKEINSKKEISFPKNI--------DFIFIGTKSDLYS----TYTEEY---DHLISS 345 ILL+ +N +E++ +++ + K+DL + E + ++S+ Sbjct: 301 FILLV--LNQNEELTVEDEALFEAAAGHNYVVVLNKTDLETKLDINRVRELAGENPIVST 358 Query: 346 --FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCG 401 EGLE L IK++ + + S+ RH+ L Q + L + + Sbjct: 359 SLVNDEGLEALEEAIKTLFFAGDIDAGDATYVSNVRHIALLHQALEALNGVTTGIQLGMP 418 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +DI+ ++ A LG+ITG ++LLD +F++FC+GK Sbjct: 419 VDIVQIDMTRAWDLLGEITGDSVQDELLDQLFNQFCLGK 457 >gi|150021216|ref|YP_001306570.1| tRNA modification GTPase TrmE [Thermosipho melanesiensis BI429] gi|205829182|sp|A6LMN4|MNME_THEM4 RecName: Full=tRNA modification GTPase mnmE gi|149793737|gb|ABR31185.1| tRNA modification GTPase TrmE [Thermosipho melanesiensis BI429] Length = 441 Score = 227 bits (579), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 154/445 (34%), Positives = 252/445 (56%), Gaps = 16/445 (3%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI AVS+ AI++IR+ GP + + + K R+ Y +G ILD+ Sbjct: 3 DTIAAVSSPHGTGAIAVIRIDGPKSHDIAKKLTGLNKVEYRRVYTTYL-NFEGDILDQVN 61 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 ++ F SP S+TG D E + HGGI V +L+ + K R+A GEF++R F NGKI L Sbjct: 62 IVFFKSPNSYTGNDLIEIYTHGGILVTQNVLDAILK-SGARIAKRGEFTKRGFLNGKISL 120 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 ++AE++ +I +++E+ ++S++ + G+L + ++ ++ S IE D+ + D++ Sbjct: 121 VQAEAIYQIIEAKSEVSLKMSLQNLKGKLGEEIEYYRGEILNVLSEIEVTFDYPD--DIE 178 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 K +LN + LK+++ I K ++ NG + I+G N+GKS+L N L +D A Sbjct: 179 -LDEKSILNLLSKLKDEVGRKIEDSKKSIMLNNGIVMTIVGKPNSGKSTLLNRLLLEDRA 237 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTDIPGTTRDV+ ++++ G I DTAGIRET D+VEK GI+R+ E++ AD+IL + Sbjct: 238 IVTDIPGTTRDVIKGEIEINGIRFVIVDTAGIRETKDVVEKIGIERSLKEIQKADVILFV 297 Query: 306 KEIN---SKKEISFPKNI---DFIFIGTKSDLYSTYTEEYDH--LISSFTGEGLEELINK 357 + +K++ + I ++I + K D + + + +D IS+ GEGL+ L NK Sbjct: 298 LDATTGFTKEDKLILRKIEGGNYIPVWNKCDEGNNFNKIFDGEIKISALNGEGLKNLENK 357 Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG--LDIIAENLRLASVS 415 I S + N + S +R + L + +LE A +N + G +D+I+ +LR A Sbjct: 358 IVSKVKNIIESGTASHVITQRQVEILERVYTHLESA-VNNLNMGYEIDLISIDLRRALEE 416 Query: 416 LGKITGCVDVEQLLDIIFSKFCIGK 440 L + G + LLD IFS FC+GK Sbjct: 417 LDMLIGRKFSDDLLDNIFSNFCVGK 441 >gi|16802002|ref|NP_472270.1| tRNA modification GTPase TrmE [Listeria innocua Clip11262] gi|21363013|sp|Q926U7|MNME_LISIN RecName: Full=tRNA modification GTPase mnmE gi|16415484|emb|CAC98168.1| lin2943 [Listeria innocua Clip11262] Length = 457 Score = 227 bits (579), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 150/459 (32%), Positives = 251/459 (54%), Gaps = 25/459 (5%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRI 60 E +TI A+ST AI+IIRLSGP Q+ + I K S +G DG + Sbjct: 2 EFDTIAAISTPPGEGAIAIIRLSGPEAIQIADRIFYAKNSLSEAESHTIHYGHIKEDGEV 61 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +++ ++ V +P +FT ED E + HGGI VN +L+ L + LA PGEF++RAF N Sbjct: 62 IEEVMVTVMRAPRTFTREDVVEINAHGGIVSVNRVLQLLLR-NGANLAEPGEFTKRAFLN 120 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G+IDL +AE++ DLI ++T+ +++ M G LS L ++ + +E ++D+ E Sbjct: 121 GRIDLSQAEAVMDLIRAKTDRAMGVAIRQMDGNLSRLIRNLRQEILDALAQVEVNIDYPE 180 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 +DV+ + + +L ++ + + G+I+R G I+G N GKSSL N L Sbjct: 181 YDDVEEMTQRMLLEKTELVRASVEQLLQTASQGKILREGLATAIIGRPNVGKSSLLNQLI 240 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 +++ AIVTDI GTTRD++ +++ G +++ DTAGIRET+DIVEK G++R+ + +AD Sbjct: 241 QEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETEDIVEKIGVERSRKALADAD 300 Query: 301 LILLLKEINSKKEISFPKNI--------DFIFIGTKSDLYS----TYTEEY---DHLISS 345 ILL+ +N +E++ +++ + K+DL + E + ++S+ Sbjct: 301 FILLV--LNQNEELTVEDEALFEAAAGHNYVVVLNKTDLETKLDINRVRELAGENPIVST 358 Query: 346 --FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCG 401 EGLE L IK++ + + S+ RH+ L Q + L + + Sbjct: 359 SLVNDEGLEALEEAIKALFFAGDIDAGDATYVSNVRHIALLHQALEALNGVTTGIQLGMP 418 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +DI+ ++ A LG+ITG ++LLD +F++FC+GK Sbjct: 419 VDIVQIDMTRAWDLLGEITGDSVQDELLDQLFNQFCLGK 457 >gi|254851886|ref|ZP_05241234.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL R2-503] gi|254992368|ref|ZP_05274558.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL J2-064] gi|300763431|ref|ZP_07073429.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL N1-017] gi|258605181|gb|EEW17789.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL R2-503] gi|300515708|gb|EFK42757.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL N1-017] Length = 457 Score = 227 bits (579), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 150/459 (32%), Positives = 251/459 (54%), Gaps = 25/459 (5%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRI 60 E +TI A+ST AI+IIRLSGP Q+ + I K S +G DG + Sbjct: 2 EFDTIAAISTPPGEGAIAIIRLSGPEAIQIADRIFYAKNSLSEAESHTIHYGHIKEDGEV 61 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +++ ++ V +P +FT ED E + HGGI VN +L+ L + LA PGEF++RAF N Sbjct: 62 IEEVMVTVMRAPRTFTREDVVEINAHGGIVSVNRVLQLLLR-NGANLAEPGEFTKRAFLN 120 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G+IDL +AE++ DLI ++T+ +++ M G LS L ++ + +E ++D+ E Sbjct: 121 GRIDLSQAEAVMDLIRAKTDRAMGVAIRQMDGNLSRLIRNLRQEILDALAQVEVNIDYPE 180 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 +DV+ + + +L ++ + + G+I+R G I+G N GKSSL N L Sbjct: 181 YDDVEEMTQRMLLEKTELVRASVEQLLQTASQGKILREGLATAIIGRPNVGKSSLLNQLI 240 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 +++ AIVTDI GTTRD++ +++ G +++ DTAGIRET+DIVEK G++R+ + +AD Sbjct: 241 QEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETEDIVEKIGVERSRKALADAD 300 Query: 301 LILLLKEINSKKEISFPKNI--------DFIFIGTKSDLYS----TYTEEY---DHLISS 345 ILL+ +N +E++ +++ + K+DL + E + ++S+ Sbjct: 301 FILLV--LNQNEELTVEDEALFEAAAGHNYVVVLNKTDLETKLDINRVRELAGENPIVST 358 Query: 346 --FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCG 401 EGLE L IK++ + + S+ RH+ L Q + L + + Sbjct: 359 SLVNDEGLEALEEAIKTLFFAGDIDAGDATYVSNVRHITLLHQALEALNGVTTGIQLGMP 418 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +DI+ ++ A LG+ITG ++LLD +F++FC+GK Sbjct: 419 VDIVQIDMTRAWDLLGEITGDSVQDELLDQLFNQFCLGK 457 >gi|194246565|ref|YP_002004204.1| tRNA modification GTPase TrmE [Candidatus Phytoplasma mali] gi|193806922|emb|CAP18351.1| tRNA modification GTPase [Candidatus Phytoplasma mali] Length = 452 Score = 227 bits (579), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 155/451 (34%), Positives = 255/451 (56%), Gaps = 18/451 (3%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK---KPFPRKASLRYFFGLDGRILD 62 +TI A+ T +SIIR+SG + I K K K + + D ILD Sbjct: 4 DTIAAIITPFGTGGVSIIRISGTKTIEEIRKIFKGKNLNKMNSHTITHGFILNKDNIILD 63 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 + L+ +F +P+SFTGED E H HGGI + +LE + ++ N+R++ PGEFS+RA+ N K Sbjct: 64 EVLISLFKNPKSFTGEDVIEIHTHGGILITQMVLERILEL-NIRMSLPGEFSQRAYLNRK 122 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 IDL++AES+ DLI ++ E +++ G+ + S L Q +K+ ++ S IE ++D+ E E Sbjct: 123 IDLIQAESIMDLIYAKNENAIKIANLGLQKKTSQLVIQLREKILNLISQIEVNIDYPEYE 182 Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 D S + +L L +I + + ++ G + +I+G N GKSSL N ++ Sbjct: 183 DTTVMSKENILPQTKLLIKEIKNVLKYSYKTRYLKEGVETLIIGRPNVGKSSLLNFFLEE 242 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 + +IV+DIPGTTRD + + +L+G + + DTAG+RE +D +EK G+ +T ++ A+L+ Sbjct: 243 ERSIVSDIPGTTRDFVDVYFNLQGITLHLIDTAGVREAEDKIEKIGVLKTKQLLKKAELV 302 Query: 303 LLLKEINS------KKEISFPKNIDFIFIGTKSDLYS-----TYTEEYDHLISSFTGEGL 351 LL+ + N+ K+ ++ K+ I IG KSDL + TEE IS+ +GL Sbjct: 303 LLVLDQNNCLQSEDKELLNLTKDYPRILIGNKSDLKTKIEKQQLTEEI-IFISTIEKKGL 361 Query: 352 EELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAENL 409 E L N I IL + K+ F+ S+ RH+ + + + +LE AS + + + +DI ++ Sbjct: 362 ELLKNNILKILKLDVIKEKDFNYFSNTRHIQQIKKALCFLEDASNSLQNNIPVDICVDDF 421 Query: 410 RLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + + LG I G + L+ +FSKFC+GK Sbjct: 422 KKSYEFLGLILGECQTDDLIKNLFSKFCLGK 452 >gi|284038159|ref|YP_003388089.1| tRNA modification GTPase TrmE [Spirosoma linguale DSM 74] gi|283817452|gb|ADB39290.1| tRNA modification GTPase TrmE [Spirosoma linguale DSM 74] Length = 458 Score = 227 bits (579), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 152/464 (32%), Positives = 258/464 (55%), Gaps = 33/464 (7%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGR 59 ++ E I A++T AI+++R+SG ++ + + K + + +F L DG Sbjct: 2 YQLEPIAALATAPGIGAIAVVRVSGEGAIELTNRLFRGKDLTQQTSHTAHFGTLRNEDGS 61 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 I+D+ L VF +P+SFT ED E HG ++ IL L + +RLA PGEF++RAF Sbjct: 62 IIDEVLATVFRAPKSFTKEDVVEISCHGSEFIIQQILRRLMQ-EGVRLARPGEFTQRAFL 120 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NG+ DL++AE++ADLI+S+++ R ++ + G S + +L + +E +LDF Sbjct: 121 NGQFDLVQAEAVADLIASDSDASHRAALTQLRGGFSKQLKELRQQLIDFVALVELELDFG 180 Query: 180 EEEDVQNFSSKEVLNDILF-LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 EE DV+ F+ ++ L ++ ++ + I G I+NG VI+G NAGKS+L NA Sbjct: 181 EE-DVE-FAHRDRLRQLMLDIRRVLHPLIESFSTGNAIKNGVPTVIVGKPNAGKSTLLNA 238 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L ++ AIV+DIPGTTRDV+ +L ++G ++ DTAG+R+ D +E GI+RT ++ + Sbjct: 239 LLNEEKAIVSDIPGTTRDVIEDELFIDGIRFRLIDTAGLRQATDRIEAIGIERTQQKMRD 298 Query: 299 ADLILLLKEINSKKEISFPKNID--------FIFIGTKSDLYSTYTEEYDHLISSFTGEG 350 A L++ L + + K +D ++ +G K D + T E + + GE Sbjct: 299 ASLVVYLFDAKNVKADELQTAVDEVRASRKPYLLVGNKLDAITDTTRES---LETMLGES 355 Query: 351 L-------EELINKIKSILSNKFK-----KLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398 + + ++++K+ LS + + + ++ ++ RH HL+ T L A ++ Sbjct: 356 VVWISAANQTHLDELKAALSARVRTDAAVQTGSAVVTNSRHYNHLTGTDEALARA-IHGL 414 Query: 399 DCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D + D +A +LR+A LG++TG + + LLD IFSKFCIGK Sbjct: 415 DTSVTPDWLAMDLRVALQHLGELTGEITTDDLLDSIFSKFCIGK 458 >gi|284929261|ref|YP_003421783.1| tRNA modification GTPase trmE [cyanobacterium UCYN-A] gi|284809705|gb|ADB95402.1| tRNA modification GTPase trmE [cyanobacterium UCYN-A] Length = 457 Score = 227 bits (579), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 165/465 (35%), Positives = 253/465 (54%), Gaps = 33/465 (7%) Query: 1 MNHEKETIFAVSTGALP--SAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFF-- 54 M TI A++T +P ++ I+RLSG + + + FI K+ + L + Sbjct: 1 MIRSGRTIAAIATAVVPEEGSVGIVRLSGDKAYAIAKKIFIAPGKQQWESHKVLYGYIHS 60 Query: 55 GLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114 D RI+D+ LLI+ +P S+T ED EFH HGGI VV +L+ K + LA GEF+ Sbjct: 61 SKDSRIIDEALLILMLAPRSYTREDIVEFHCHGGIIVVQQVLQLCIKEGAI-LAEHGEFT 119 Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174 RAF NG+IDL +AES+++++ +++ + +++M G+ G+LS+ + S IE+ Sbjct: 120 LRAFLNGRIDLTQAESISEIVGAKSPLASQIAMAGIQGKLSNPIKNLRLDCLELLSEIES 179 Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234 +DF EED+ S +L I + + +S K GE++R+G KI ILG N GKSS Sbjct: 180 RIDF--EEDLPPLSQVVILQKIQDFLHRVKKLLSTSKTGELLRSGLKIAILGRPNVGKSS 237 Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294 L N+ ++ + AIVTD+PGTTRD++ +L ++ +K+ DTAGIR TD+ +EK G++RT L Sbjct: 238 LLNSWSRSNKAIVTDLPGTTRDIVESNLIIKNIPIKVLDTAGIRHTDNQIEKIGVQRTHL 297 Query: 295 EVENADLILLL---------KEINSKKEISFPKNIDFIFIGTKSDL----YSTYTEEYDH 341 ADLILL +E K+I K++ I I K DL S E Sbjct: 298 AANQADLILLTIDAQIGWTEEETEIYKKI---KHLPIILIVNKIDLNVPDLSIIPSEIQE 354 Query: 342 L--ISSFTGEGLEELINKIKSILSNK---FKKLPFSIPSHKRHLYHLSQT-VRYLEMASL 395 + IS+ G++ + I + + K K + F+I ++R L L + + + ++ Sbjct: 355 VIKISAIQNLGIDSIEEAILNFIYKKNLIAKNVDFTI--NQRQLEILIRVKIAFEDIIKT 412 Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + LD I +LR A LG+ITG E LL IFS FCIGK Sbjct: 413 INNELPLDFITIDLRSAIKILGEITGDEVTESLLSKIFSTFCIGK 457 >gi|198282180|ref|YP_002218501.1| tRNA modification GTPase TrmE [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667012|ref|YP_002424545.1| tRNA modification GTPase TrmE [Acidithiobacillus ferrooxidans ATCC 23270] gi|198246701|gb|ACH82294.1| tRNA modification GTPase TrmE [Acidithiobacillus ferrooxidans ATCC 53993] gi|218519225|gb|ACK79811.1| tRNA modification GTPase TrmE [Acidithiobacillus ferrooxidans ATCC 23270] Length = 451 Score = 227 bits (578), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 161/454 (35%), Positives = 249/454 (54%), Gaps = 22/454 (4%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPF-PRKASLRYFFGLDGR 59 + +TI A++T + I+R SGP + +C ++ KP PR A R F+ DG Sbjct: 4 QQGDTIVAIATPPGEGGVGILRFSGPQAPSIATALCGRRSAKPLTPRHAHFRRFYARDGS 63 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 ++D G+++ FP+P S+TGE E HG + +L E + GEFS RAF Sbjct: 64 LIDHGIVLYFPAPNSYTGETVVELQGHGSPLALASLLTEAIALGARAARA-GEFSERAFL 122 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NG++DL +AE++ADLI + ++ Q R + + G S +L + + EA LDFS Sbjct: 123 NGRLDLAQAEAVADLIHARSDAQARAAAASLEGAFSQAVDDIHGQLLRLLALAEAGLDFS 182 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 EE D+ + ++ + + ++ L ++ + Q + G + G ++V+ G N GKSSL NAL Sbjct: 183 EE-DLGDAHAQAISDSLVRLDAQVAHLLKQAQQGARLARGGRVVLAGRPNVGKSSLMNAL 241 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 A+++ AIVT IPGTTRD+L ++ L G V++ DTAG+RE D VE EG+ R + +A Sbjct: 242 ARRESAIVTAIPGTTRDLLREEIILGGLPVELVDTAGLREATDAVEAEGVARARNILHSA 301 Query: 300 DLILLLKEIN----SKKEI---SFPKNIDFIFIGTKSDLYS----TYTEEYDHLISSFTG 348 LILL+ + + S+ E+ P+ I I K DL S T T E +S+ TG Sbjct: 302 QLILLVADASTGWQSEDEVILRDLPEGPRRI-IWNKMDLVSAPPATPTGEEAITLSAQTG 360 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIA 406 GL+ L + L + PFS + +RH+ L L +A +L D +++A Sbjct: 361 AGLDTLHCSLIEALGVQGDSCPFS--ARRRHVEALESCAHRLGIAGDTLRLGDA-PELVA 417 Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++LR A+ +L ITG +DVE +L IFS+FCIGK Sbjct: 418 QSLREAAAALAGITGHMDVEDILGEIFSRFCIGK 451 >gi|119486976|ref|ZP_01620848.1| tRNA modification GTPase [Lyngbya sp. PCC 8106] gi|119455905|gb|EAW37039.1| tRNA modification GTPase [Lyngbya sp. PCC 8106] Length = 469 Score = 227 bits (578), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 159/467 (34%), Positives = 254/467 (54%), Gaps = 38/467 (8%) Query: 6 ETIFAVSTGALPS--AISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL----- 56 ETI A++T +P +I I+RLSG + + F ++P+ S R +G Sbjct: 9 ETIVAIATAIVPQQGSIGIVRLSGSQAIAIAKLLFAAPGRQPWE---SHRILYGYIRHPQ 65 Query: 57 DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 +++D+ LL++ +P S+T ED EFH HGGI V +L+ L RLA PGEF+ R Sbjct: 66 TQQVVDEALLLLMLAPRSYTREDVVEFHCHGGIIAVQQVLQ-LCLEAGARLAQPGEFTLR 124 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NG+IDL +AES+A+L+ S+++ ++ G+ G+L++ Q + + IEA + Sbjct: 125 AFLNGRIDLTQAESIAELVGSQSQAAALAAIAGLQGKLATPIRQLRATCLDVLAEIEARI 184 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 DF EED+ + E+++ + + ++S I + GE +R+G K+ I+G N GKSSL Sbjct: 185 DF--EEDLPPLNVPEIVSQVNQISAELSILIETAEKGERLRSGLKVAIVGRPNVGKSSLL 242 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 NA ++ D AIVTD+PGTTRDV+ L + G V++ DTAGIR ++D VEK GI+R+ Sbjct: 243 NAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRNSEDQVEKIGIERSQTAA 302 Query: 297 ENADLILLLKE-----INSKKEI-SFPKNIDFIFIGTKSDLYS-----TYTEEY------ 339 + ADL+LL + S +EI ++ I I K D S EE Sbjct: 303 KLADLVLLTIDAEAGWTESDEEIYQQVQHRPLILILNKIDRVSANELDAKVEEILAKLNR 362 Query: 340 DHLISSFTGEGLEELINKIKS-----ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS 394 ++L++ T L + I ++++ I + + I ++R +++ + L+ Sbjct: 363 ENLLTVKTAAALNQGITELETAILTAINAGNLQAKNLDIAINQRQASVITRAKKALDQMK 422 Query: 395 LN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + E LD +LR A +LG++TG E +LD IFS+FCIGK Sbjct: 423 ITIENQLPLDFWTIDLREAIQALGEVTGEEVTESVLDRIFSRFCIGK 469 >gi|313900904|ref|ZP_07834394.1| tRNA modification GTPase TrmE [Clostridium sp. HGF2] gi|312954324|gb|EFR36002.1| tRNA modification GTPase TrmE [Clostridium sp. HGF2] Length = 443 Score = 227 bits (578), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 154/451 (34%), Positives = 257/451 (56%), Gaps = 27/451 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD---GRILD 62 +TI A+ST A+ AISIIR+SG + + I + ++ Y + D ++D Sbjct: 4 DTIAAISTAAVDGAISIIRMSGADALSIADSILNFNVGEKKSHTISYGYVYDQEHDELID 63 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 + L+ VF +P++FT ED E + HGG + IL L RLANPGEF++RAF NG+ Sbjct: 64 EVLVSVFRAPKTFTCEDIVEINCHGGRFITKKILR-LCLAHGARLANPGEFTQRAFLNGR 122 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 IDL +AE++ D+I ++T+ R++++G+ G + L I L I + IE ++D+ E + Sbjct: 123 IDLTQAEAVNDMIQADTDENARMAVQGIRGSVRKLLEPLIQDLLDIIANIEVNIDYPEYD 182 Query: 183 DVQNFSSKEVLNDILFLKND-----ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 DV+ SS DI+ K + I + + + G++++ G K I+G N GKSSL N Sbjct: 183 DVEQLSS-----DIIQPKAEEWMMRIRQILDRAQSGQLLKEGIKTAIVGKPNVGKSSLLN 237 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 AL +++ AIVTDI GTTRD++ + L+G + + DTAGIR+T+D+VE+ GI+R+ + Sbjct: 238 ALLEEEKAIVTDIAGTTRDIVEGHIHLQGLTLNLIDTAGIRDTEDVVEQIGIRRSLQAIS 297 Query: 298 NADLILLLKE----INSKKE--ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGL 351 A L++++ + ++++ E + K+ I + K+D+ S E IS+ +GE + Sbjct: 298 EAQLVIVVLDSSHALDAQDEELLELTKDKTRIIVYNKTDI-SHRCEGI--CISAASGE-I 353 Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRH--LYHLSQTVRYLEMASLNEKDCGLDIIAENL 409 E L+ KI + L + ++R L +++ +A++ K LDI+A ++ Sbjct: 354 EPLMAKIHELFDGHQLVLQEPLLQNERQISLMMKAESCMRQALAAMKSK-MELDIVAIDI 412 Query: 410 RLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + A +L +I G V E LLD +FS FC+GK Sbjct: 413 QEAYTALKEILGEVHREDLLDTLFSNFCLGK 443 >gi|255026481|ref|ZP_05298467.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL J2-003] Length = 457 Score = 227 bits (578), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 150/459 (32%), Positives = 251/459 (54%), Gaps = 25/459 (5%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRI 60 E +TI A+ST AI+IIRLSGP Q+ + I K S +G DG + Sbjct: 2 EFDTIAAISTPPGEGAIAIIRLSGPEAIQIADRIFYAKNSLSEAESHTIHYGHIKEDGEV 61 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +++ ++ V +P +FT ED E + HGGI VN +L+ L + LA PGEF++RAF N Sbjct: 62 IEEVMVTVMRAPRTFTREDVVEINAHGGIVSVNRVLQLLLR-NGANLAEPGEFTKRAFLN 120 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G+IDL +AE++ DLI ++T+ +++ M G LS L ++ + +E ++D+ E Sbjct: 121 GRIDLSQAEAVMDLIRAKTDRAMGVAIRQMDGNLSRLIRNLRQEILDALAQVEVNIDYPE 180 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 +DV+ + + +L ++ + + G+I+R G I+G N GKSSL N L Sbjct: 181 YDDVEEMTQRMLLEKTELVRASVEQLLRTASQGKILREGLATAIIGRPNVGKSSLLNQLI 240 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 +++ AIVTDI GTTRD++ +++ G +++ DTAGIRET+DIVEK G++R+ + +AD Sbjct: 241 QEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETEDIVEKIGVERSRKALADAD 300 Query: 301 LILLLKEINSKKEISFPKNI--------DFIFIGTKSDLYS----TYTEEY---DHLISS 345 ILL+ +N +E++ +++ + K+DL + E + ++S+ Sbjct: 301 FILLV--LNQSEELTVEDEALFEAAAGHNYVVVLNKTDLETKLDINRVRELAGENPIVST 358 Query: 346 --FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCG 401 EGLE L IK++ + + S+ RH+ L Q + L + + Sbjct: 359 SLVNDEGLEALEEAIKTLFFAGDIDAGDATYVSNVRHIALLHQALEALNGVTTGIQLGMP 418 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +DI+ ++ A LG+ITG ++LLD +F++FC+GK Sbjct: 419 VDIVQIDMTRAWDLLGEITGDSVQDELLDQLFNQFCLGK 457 >gi|254830753|ref|ZP_05235408.1| tRNA modification GTPase TrmE [Listeria monocytogenes 10403S] Length = 457 Score = 227 bits (578), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 150/459 (32%), Positives = 251/459 (54%), Gaps = 25/459 (5%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRI 60 E +TI A+ST AI+IIRLSGP Q+ + I K S +G DG + Sbjct: 2 EFDTIAAISTPPGEGAIAIIRLSGPEAIQIADRIFYAKNSLSEAESHTIHYGHIKEDGEV 61 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +++ ++ V +P +FT ED E + HGGI VN +L+ L + LA PGEF++RAF N Sbjct: 62 IEEVMVTVMRAPRTFTREDVVEINAHGGIVSVNRVLQLLLR-NGANLAEPGEFTKRAFLN 120 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G+IDL +AE++ DLI ++T+ +++ M G LS L ++ + +E ++D+ E Sbjct: 121 GRIDLSQAEAVMDLIRAKTDRAMGVAIRQMDGNLSRLIRNLRQEILDALAQVEVNIDYPE 180 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 +DV+ + + +L ++ + + G+I+R G I+G N GKSSL N L Sbjct: 181 YDDVEEMTQRMLLEKTELVRASVEQLLRTASQGKILREGLATAIIGRPNVGKSSLLNQLI 240 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 +++ AIVTDI GTTRD++ +++ G +++ DTAGIRET+DIVEK G++R+ + +AD Sbjct: 241 QEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETEDIVEKIGVERSRKALADAD 300 Query: 301 LILLLKEINSKKEISFPKNI--------DFIFIGTKSDLYS----TYTEEY---DHLISS 345 ILL+ +N +E++ +++ + K+DL + E + ++S+ Sbjct: 301 FILLV--LNQNEELTVEDEALFEAAAGHNYVVVLNKTDLETKLDINRVRELAGENPIVST 358 Query: 346 --FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCG 401 EGLE L IK++ + + S+ RH+ L Q + L + + Sbjct: 359 SLVNDEGLEALEEAIKTLFFAGDIDAGDATYVSNVRHIALLHQALEALNGVTTGIQLGMP 418 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +DI+ ++ A LG+ITG ++LLD +F++FC+GK Sbjct: 419 VDIVQIDMTRAWDLLGEITGDSVQDELLDQLFNQFCLGK 457 >gi|172059049|ref|YP_001815509.1| tRNA modification GTPase TrmE [Exiguobacterium sibiricum 255-15] gi|205829139|sp|B1YGA8|MNME_EXIS2 RecName: Full=tRNA modification GTPase mnmE gi|171991570|gb|ACB62492.1| tRNA modification GTPase TrmE [Exiguobacterium sibiricum 255-15] Length = 460 Score = 227 bits (578), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 149/459 (32%), Positives = 255/459 (55%), Gaps = 23/459 (5%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG-----LDG 58 E +TI A+ST AI+I+RLSGP + + + + + +G Sbjct: 3 EFDTIAAISTPMGEGAIAIVRLSGPKAVETADRVYRGANRLTDVPTHTIHYGKLVEQTTE 62 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 +++D+ ++ V +P++FT ED E + HGGI VN +LE + + P++RLA PGEF++RAF Sbjct: 63 QVVDEVMVSVMRAPKTFTREDVVELNCHGGIVAVNRVLELILEQPDVRLAEPGEFTKRAF 122 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG+IDL +AE++ DLI ++T+ +++ + G LS L ++L + IE ++D+ Sbjct: 123 LNGRIDLSQAEAVMDLIRAKTDRAMTVAVGQIEGRLSKLVQDLREQLLQTIASIEVNIDY 182 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E D + + + V D ++ ++ ++ + G+I+R G I+G N GKSSL N Sbjct: 183 P-EYDAEEMTQQIVQKDAGEVRRILTELLATARQGKILREGLSTAIIGRPNVGKSSLLNT 241 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L ++ AIVTDI GTTRD + +++ G +K+ DTAGIRET+DIVE+ G++++ + + Sbjct: 242 LVQEAKAIVTDIAGTTRDTIEEYVNVRGVPLKLIDTAGIRETEDIVERMGVEKSRQALNS 301 Query: 299 ADLILLLKEIN---SKKEISF---PKNIDFIFIGTKSDLYS----TYTEEYDHLISSFTG 348 ADLILL+ N +++++ + ++ I I KSDL T E T Sbjct: 302 ADLILLVLNGNDALTEEDVLLFEAIRGMNAIIIVNKSDLTQAIDLTRVSELADGRPVVTT 361 Query: 349 EGLEEL-INKIKSILSNKF-----KKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCG 401 LEE + +++ +++ F + + S+ RH+ + Q + +E A E Sbjct: 362 SLLEEAGVTDLEAAIASLFFEQGVEGQDMTYVSNARHIQLIKQASQMIEDALGAAEASMP 421 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +LR A +LG+I G + LLD +FS+FC+GK Sbjct: 422 IDMVQIDLRRAWDTLGEINGDTAQDSLLDKLFSQFCLGK 460 >gi|121703576|ref|XP_001270052.1| mitochondrial GTPase (Mss1), putative [Aspergillus clavatus NRRL 1] gi|119398196|gb|EAW08626.1| mitochondrial GTPase (Mss1), putative [Aspergillus clavatus NRRL 1] Length = 572 Score = 227 bits (578), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 128/324 (39%), Positives = 193/324 (59%), Gaps = 27/324 (8%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLDGR-----I 60 TI+A+ST +AI+++RLSGP+C QV +C + P PR A++R + + + Sbjct: 36 TIYALSTAPGRAAIAVVRLSGPACVQVYHALCPNARLPRPRIAAVRTVYDPTQKPSANTV 95 Query: 61 LDKGLLIV-FPSPESFTGEDSAEFHVHGGIAVVNGILEELAKM--PN---LRLANPGEFS 114 LD G L++ FP P++ TGED EFH+HGG A+V +L +A+ P+ +R A PGEF+ Sbjct: 96 LDTGALVLYFPGPKTVTGEDVLEFHLHGGPAIVRSVLAAIARTSRPDESLVRYAEPGEFT 155 Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174 RRAF N ++ L + E+L D ++++TE QRRL++ G S LS Y W +L + R +EA Sbjct: 156 RRAFMNNRLGLPQIEALGDTLTADTEQQRRLAVRGASDALSKRYELWRQQLLYARGELEA 215 Query: 175 DLDFSE-----EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSN 229 +DFSE E V+ SS V + L+ + H+ GE++RNG KI +LG N Sbjct: 216 LIDFSEDQHFDESPVELISSVAV--QVRALQAQLKLHVENASKGELLRNGIKIALLGAPN 273 Query: 230 AGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD------- 282 AGKSSL N + K+ AIV+ GTTRD++ + +D+ G+ K+ D AGIR + Sbjct: 274 AGKSSLLNRVVGKEAAIVSTEEGTTRDIVDVGVDVGGWYCKLGDMAGIRSENSSQRTVVI 333 Query: 283 -IVEKEGIKRTFLEVENADLILLL 305 VEKEGI+R +D+I+++ Sbjct: 334 GAVEKEGIRRARARALESDVIVVV 357 >gi|240047711|ref|YP_002961099.1| tRNA modification GTPase TrmE [Mycoplasma conjunctivae HRC/581] gi|239985283|emb|CAT05296.1| tRNA modification GTPase mnmE [Mycoplasma conjunctivae] Length = 440 Score = 226 bits (577), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 155/447 (34%), Positives = 254/447 (56%), Gaps = 22/447 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD-GRILDKG 64 +TI A+++G + AISIIR+SG + FQ+ E I K + + Y + D G+ +D+ Sbjct: 4 DTIVAIASGQVNQAISIIRISGDNAFQIMEQIFSGK--IGKSQQITYGWIHDKGQKIDEV 61 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 L++ F ++F G+ + E + HGG+ N ILE + RLANPGEFS R+F NGK+D Sbjct: 62 LVLWFEGSKNFVGQPTVEINAHGGVLNTNIILELILSTKLARLANPGEFSMRSFLNGKMD 121 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L++A+++ DLI ++T Q L+++ G S + I L I IE ++D+ E +DV Sbjct: 122 LVKAQAINDLIHAQTRSQHSLALKQFEGHTSKYISELIVDLEAIIGIIEVNIDYPEYDDV 181 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + +S+ +L I L+ ++ + + +I G K+ I+G N+GKSSL NAL K++ Sbjct: 182 EEMTSQILLPTIDKLEQKFANLLERANRSRLIFEGIKVTIVGVPNSGKSSLLNALLKENK 241 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIV++I GTTRDV+ + ++ L K+SDTAGIR+ D +E+ GI++ F ++ DLI+ Sbjct: 242 AIVSEIAGTTRDVVEGNFQIDNILFKVSDTAGIRKAKDQIEQIGIQKAFEQISKNDLIIH 301 Query: 305 LKEINSKK-------EI-SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356 + I+S+K EI S N +I + K+DL ++ + + S + +E LI+ Sbjct: 302 V--IDSQKGFDKTDQEIASTITNQVYIQVYNKADLIE--AKQKNQIYISAKNDEIETLIS 357 Query: 357 KIKSILSNKFKKLPFSIPSHKRHLYHLSQ---TVRYLEMASLNEKDCGLDIIAENLRLAS 413 +IK F ++ S+ R + + +++ ++A LN + G D+ ++R A Sbjct: 358 EIKK--KYHFLQIDDDFVSNTRQISQIRMALISLKEAKIALLN--NLGPDVAIVDIRQAW 413 Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440 L I G D E LLD IFS FC+GK Sbjct: 414 KDLKSILGQADDEDLLDSIFSNFCLGK 440 >gi|217077738|ref|YP_002335456.1| tRNA modification GTPase TrmE [Thermosipho africanus TCF52B] gi|217037593|gb|ACJ76115.1| tRNA modification GTPase TrmE [Thermosipho africanus TCF52B] Length = 441 Score = 226 bits (577), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 153/444 (34%), Positives = 251/444 (56%), Gaps = 14/444 (3%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A+S+ AIS++R+ GP + + + K R+ F +G+I+D+ Sbjct: 3 DTIAAISSPLGTGAISVVRIDGPKSHDIAKKLVKISNVDYRRV-YHAFMEFEGQIVDEVN 61 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 ++ + SP S+TG D E + HGGI V +LE + K RLA GEF++RAF NGKI L Sbjct: 62 IVFYKSPNSYTGNDLVEIYGHGGILVTRKVLEAVLK-SGARLAERGEFTKRAFLNGKISL 120 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 ++AES+ +I +++E+ +LS E + G+LS + +L +I + IE +D+ ++ +V Sbjct: 121 VQAESIYQIIEAKSEISLKLSFENLKGKLSEEIENYRSRLLNILAEIEVSIDYPDDMEV- 179 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 +F + + N + + ++S I K + G + I+G N+GKS+L N L ++D A Sbjct: 180 DFDN--IFNLLSKIDQELSLKIENSKKALTLNKGIVMAIVGKPNSGKSTLLNKLLEEDRA 237 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTDIPGTTRDV+ ++D+ G I DTAGIRETDD+VE GI+++ E+E AD++L + Sbjct: 238 IVTDIPGTTRDVIKGEIDINGIHFVIVDTAGIRETDDVVESIGIQKSIKELEKADIVLFV 297 Query: 306 KEINS--KKEISF----PKNIDFIFIGTKSDLYSTYTEEYDHL--ISSFTGEGLEELINK 357 + + KE + K +++I + K D+ + + +E+ IS+ TGE L + Sbjct: 298 LDSTTGFTKEDEYIFEKVKKLNYIPVWNKCDIGNNFNKEFKDAVKISALTGESFRSLESM 357 Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGLDIIAENLRLASVSL 416 I S +S+ + S +R L L + R +E A N K +D+++ ++R A L Sbjct: 358 ILSKVSDIIESGESSHVITQRQLEVLERVKRNVESAIFNLKSGYEVDVVSIDIRKALEEL 417 Query: 417 GKITGCVDVEQLLDIIFSKFCIGK 440 + G + LLD IFS FC+GK Sbjct: 418 DVLIGKRFSDDLLDTIFSNFCVGK 441 >gi|121998021|ref|YP_001002808.1| tRNA modification GTPase TrmE [Halorhodospira halophila SL1] gi|205829155|sp|A1WWE4|MNME_HALHL RecName: Full=tRNA modification GTPase mnmE gi|121589426|gb|ABM62006.1| tRNA modification GTPase trmE [Halorhodospira halophila SL1] Length = 469 Score = 226 bits (577), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 157/458 (34%), Positives = 244/458 (53%), Gaps = 24/458 (5%) Query: 2 NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRIL 61 + + +TI A++T + ++++R+SG +V E + P PR+A LR F G L Sbjct: 16 DDDADTICAMATPSGQGGVAVVRVSGSRALEVAEEVAGPL-PAPREAGLRRFRDARGETL 74 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121 D GL++VFP P S+TGED E HG A V +LE L R A PGEFS RAF NG Sbjct: 75 DHGLVLVFPGPGSYTGEDVVELQGHGSPAAVTAVLEALCAA-GARPAGPGEFSERAFLNG 133 Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181 ++DL +AE++A LI +ET+ RR ++ +SG D++ +R+ IEA LDF E+ Sbjct: 134 RLDLTQAEAVASLIEAETDGARRAALRALSGAFGQRVDGLADRMIDLRALIEAFLDFPED 193 Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 EDV E+ +I L ++++ + G G ++ ++G NAGKSSL N L+ Sbjct: 194 EDVPA-DPPELAAEIEALGSELAEIRRRAAAGVRFGEGIRVALVGPPNAGKSSLLNVLSG 252 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--ETDDIVEKEGIKRTFLEVENA 299 ++ AIV+ GTTRDV+ L ++ DTAG+R E D +E EG +R A Sbjct: 253 EEAAIVSAQAGTTRDVVRQWAALGSRHAELLDTAGLRDAEAQDEIEAEGARRARAAASEA 312 Query: 300 DLILLL--------KEINSKKEISFPKNIDFIF--IGTKSD--LYSTYTEEYDHL----I 343 DL+L++ +E+ ++ P+ + I I D + +E H+ + Sbjct: 313 DLLLVVIEAGKTLDEELRARIAEQAPRPVVVIVNKIDASGDEAGWEGESEVGAHVRRARV 372 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL- 402 S+ TG G+E L + +++ + + ++ + RH+ L + LE A + + G Sbjct: 373 SAHTGAGIEALRRGLAALVDREAGEDAWA--ARHRHIEALDRAGEELEEALVVARRGGQE 430 Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++AE LR A +LG+ITG V E LL IFS FCIGK Sbjct: 431 ELVAEALRRAQTALGEITGRVSHEALLGRIFSGFCIGK 468 >gi|223983398|ref|ZP_03633584.1| hypothetical protein HOLDEFILI_00864 [Holdemania filiformis DSM 12042] gi|223964570|gb|EEF68896.1| hypothetical protein HOLDEFILI_00864 [Holdemania filiformis DSM 12042] Length = 447 Score = 226 bits (577), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 150/447 (33%), Positives = 248/447 (55%), Gaps = 15/447 (3%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD---GRILD 62 +TI A+ST AIS+IR+SGP + + ++ ++RY + +D +D Sbjct: 4 DTIAAISTALQDGAISVIRISGPDSLAIAGRLFSRRVDDQPTHTVRYGYIIDPITKEAVD 63 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 + LL VF +P++FT ED E HGG + IL L RLA+PGEF+RRAF NG+ Sbjct: 64 EVLLTVFRAPKTFTREDVVEISGHGGRYITRRILA-LVLAEGARLADPGEFTRRAFLNGR 122 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 IDL +AE++ D+I +++ Q +L+++G+ G + L + L +I + IE ++D+ E E Sbjct: 123 IDLTQAEAVMDMIDADSSQQAQLAIQGIRGSIRRLIEPLNEALLNIIANIEVNIDYPEYE 182 Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 D + + + VL + + + + G I++ G K VILG N GKSSL NAL ++ Sbjct: 183 DAEQLTWESVLPQARSWLIRMDEILQRAESGRIMKKGVKTVILGKPNVGKSSLLNALLEE 242 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 D AIVT+I GTTRD++ ++ L + + DTAGI +T+D VE+ GI+R+ +E A+LI Sbjct: 243 DKAIVTEIAGTTRDLVEGEIHLRNVTLHLIDTAGIHQTEDRVEQIGIERSMKALEEAELI 302 Query: 303 LLLKEINSKKEISFPKNIDF------IFIGTKSDLYSTYTEEYDHLISSFTGEG-LEELI 355 L++ + + ++ + +D I + K DL + E+ IS + +E LI Sbjct: 303 LIVLDASRPQDDEDRRLLDLTEGRNRIVVINKKDL-APQAEDRSGTISICAAQNQIEPLI 361 Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG--LDIIAENLRLAS 413 ++I + L +++R + L++ R ++N G LD++ +L+ A Sbjct: 362 DQINQRYEHHHAMLELPSLANERQIA-LARQARQSMAQAVNALQDGAELDLVTIDLQAAY 420 Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++L +I G E LLD +FSKFC+GK Sbjct: 421 MALKEIVGEASREDLLDALFSKFCLGK 447 >gi|153803664|ref|ZP_01958250.1| probable tRNA modification GTPase TrmE [Vibrio cholerae MZO-3] gi|124120801|gb|EAY39544.1| probable tRNA modification GTPase TrmE [Vibrio cholerae MZO-3] Length = 325 Score = 226 bits (576), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 125/320 (39%), Positives = 194/320 (60%), Gaps = 5/320 (1%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A +T + IIR+SGP V + + + PR A F DG+ LD+G+ Sbjct: 4 DTIVAQATAPGRGGVGIIRVSGPLAAHVAQTVTGRTL-RPRYAEYLPFTDEDGQQLDQGI 62 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + FP+P SFTGED E HGG V++ ++ + ++ +R A PGEFS RAF N K+DL Sbjct: 63 ALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIKGVRPARPGEFSERAFLNDKMDL 122 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI + +E + +++ + GE S ++ L H+R ++EA +DF EEE + Sbjct: 123 TQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPEEE-ID 181 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 + +V D+ + +++++ + G I+R G K+VI G NAGKSSL NAL+ K+ A Sbjct: 182 FLADGKVSADLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKESA 241 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTDI GTTRDVL + ++G + I DTAG+R+ D VEK GI+R + E+ AD +L + Sbjct: 242 IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDAVEKIGIERAWEEIRQADRVLFM 301 Query: 306 KEINSKKEISFPKNI--DFI 323 + + E + P++I DF+ Sbjct: 302 VD-GTTTEATDPQDIWPDFV 320 >gi|297585588|ref|YP_003701368.1| tRNA modification GTPase TrmE [Bacillus selenitireducens MLS10] gi|297144045|gb|ADI00803.1| tRNA modification GTPase TrmE [Bacillus selenitireducens MLS10] Length = 458 Score = 226 bits (576), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 155/462 (33%), Positives = 257/462 (55%), Gaps = 34/462 (7%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DGRI 60 +TI A+ST AI I+R+SGP ++ + + K P AS +G DG+I Sbjct: 4 DTISAISTPMGEGAIGIVRISGPKAVELADRLYKGAVPLQEVASHTINYGHLINPEDGQI 63 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +++ ++ V +P+++T ED E + HGG+ VN +L+ L RLA PGEF++RAF N Sbjct: 64 IEEVMVSVLRAPKTYTKEDMIEVNCHGGLTSVNRVLQ-LILNEGARLAEPGEFTKRAFLN 122 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G+IDL +AE++ DLI ++T+ ++M+ + G+LS+ L + +E ++D+ E Sbjct: 123 GRIDLSQAEAVMDLIQAKTDRAMNVAMKQVEGKLSNRIQTLRQALLETVASVEVNIDYPE 182 Query: 181 EEDVQNFSSKEVLNDIL-----FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 + ++EV D+L ++K +I ++ + G+I+R G VI+G N GKSSL Sbjct: 183 ------YDAEEVTLDLLREKSTYVKQEIDRLLTTAEQGKILREGLSTVIVGRPNVGKSSL 236 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N+L ++ AIVT+IPGTTRDV+ +++ G +K+ DTAGIRET+D+VE+ G++R+ Sbjct: 237 LNSLVHENKAIVTEIPGTTRDVIEEYVNIRGVPLKLLDTAGIRETEDVVERLGVERSRQV 296 Query: 296 VENADLILLLKEIN-----SKKEI-SFPKNIDFIFIGTKSDLYSTY-TEEYDHL------ 342 + +A+LIL + N S +E+ K+ D I I K DL +E + L Sbjct: 297 MIDAELILFVVNYNEPLTDSDRELFELVKDQDTIVIVNKRDLDGQIDMKEVNQLAGQHPV 356 Query: 343 --ISSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EK 398 S EG++EL I+ + S S+ RH+ L+Q R ++ A + E Sbjct: 357 VTTSLLKDEGVDELEEAIRDLFFEGDLDSGDLSYVSNSRHIALLNQAKRSIDEALMAVET 416 Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ ++ A LG++ G E L+D +FS+FC+GK Sbjct: 417 GMPVDMVQIDITKAWELLGEVIGDSVHESLIDQLFSQFCLGK 458 >gi|86610114|ref|YP_478876.1| tRNA modification GTPase TrmE [Synechococcus sp. JA-2-3B'a(2-13)] gi|123500914|sp|Q2JIE6|MNME_SYNJB RecName: Full=tRNA modification GTPase mnmE gi|86558656|gb|ABD03613.1| tRNA modification GTPase TrmE [Synechococcus sp. JA-2-3B'a(2-13)] Length = 459 Score = 226 bits (576), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 148/439 (33%), Positives = 236/439 (53%), Gaps = 20/439 (4%) Query: 19 AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL----DGRILDKGLLIVFPSPES 74 ++ I+RLSG + + I + S R +G G+ILD+ L + +P S Sbjct: 24 SVGIVRLSGSRALPIVQAIFTPARRNAVWESHRLLYGWIRDEKGQILDEALAVWMQAPRS 83 Query: 75 FTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADL 134 +T ED AE H HGGI VV L++ + RLA PGEFS RAF NG+IDL +AES+ADL Sbjct: 84 YTREDVAELHCHGGIMVVQATLQQCLRQ-GARLAQPGEFSLRAFLNGRIDLTQAESVADL 142 Query: 135 ISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194 +++ + R+++ G+ G+L +L + + IEA LDF EED+ Sbjct: 143 VAARSPQAARMALAGLQGKLGGSIRALRQELLGLLAEIEARLDF--EEDLPPLDVAAWQA 200 Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254 + ++ I + ++ + G+++R G K+ I+G N GKSSL NA + +D AIVTD+PGTT Sbjct: 201 RLQAIQTQIQALLATAERGQLLRTGVKVAIVGRPNVGKSSLLNAWSGQDRAIVTDLPGTT 260 Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314 RDV+ L ++G V++ DTAGIR T+D VE+ G++R+ + AD+++L+ + + Sbjct: 261 RDVVESHLVVKGIPVQLLDTAGIRATEDPVERLGVERSQRLAQAADVLVLVIDAQAGWTA 320 Query: 315 SFP------KNIDFIFIGTKSDLYS----TYTEEYDHLISSFT--GEGLEELINKIKSIL 362 + ++ I + K+DL E H + + G+G+ EL ++ ++ Sbjct: 321 ADAAIYESIRHRPLILVINKTDLAPPEGIPLPPEIAHRVPAVAAQGKGIPELEEALEQLV 380 Query: 363 SNKFKKLPFSIPSHKRHLYHLSQTVRYLE-MASLNEKDCGLDIIAENLRLASVSLGKITG 421 + + I ++R L Q LE + + LD + +LR A +LG+ITG Sbjct: 381 TQGRPQPNLEISLNQRQAAALQQAQASLEQVGQAIQAQLPLDFWSIDLRGALHALGQITG 440 Query: 422 CVDVEQLLDIIFSKFCIGK 440 E +LD IFS+FCIGK Sbjct: 441 EEISESVLDQIFSRFCIGK 459 >gi|320333416|ref|YP_004170127.1| tRNA modification GTPase mnmE [Deinococcus maricopensis DSM 21211] gi|319754705|gb|ADV66462.1| tRNA modification GTPase mnmE [Deinococcus maricopensis DSM 21211] Length = 438 Score = 226 bits (576), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 142/451 (31%), Positives = 241/451 (53%), Gaps = 34/451 (7%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD--GRI 60 ++TI A+ST I ++R+SG +V + + ++ R R+ +G LD G + Sbjct: 7 EDTIAAISTAPGAGGIGVVRVSGEDALRVADAMFAGRRAPGRTPGGRFLYGRVLDASGDV 66 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+ L +VF +P S+TGED EF HG AV+N +L A R A PGEF+ RA+ N Sbjct: 67 VDESLALVFRAPHSYTGEDVVEFQTHGSPAVLNRVLAR-ALEAGARPAKPGEFTLRAYVN 125 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G++DL +AE++ L++++T+ RR + G++G L++ ++T + + ++A LD+ E Sbjct: 126 GRLDLAQAEAVLSLVNAQTDTARRQATLGLTGALANRVALIQSRVTRVLAAVQAMLDYPE 185 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E ++ + D+ + I+ + G++ G ++ ++G NAGKSSL NAL Sbjct: 186 E----GVPEEDRETPLALAAQDLEALIASSRAGQLATRGARLALIGRPNAGKSSLLNALL 241 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 + +IVT + GTTRD L L+L G + + DTAG+R+TDD +E G+++ AD Sbjct: 242 GYERSIVTPVAGTTRDYLEAQLELAGVPITLVDTAGLRDTDDAIEAAGVRQAVALAGGAD 301 Query: 301 LILLLKEINSKKE---ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINK 357 LIL L++ +S +E + P + + + TK+DL + + +S+ TG GL L Sbjct: 302 LILHLEDGSSPREDAALDTPAD-RTLHVRTKADLPPAWADAATLPVSAVTGAGLPALREA 360 Query: 358 IKSILSNKFKKLPFSIPSH------KRHLYHLSQTVRYL--EMASLNEKDCGLDIIAENL 409 I++ L + + + +R L H+ Q R L E+A+L + E L Sbjct: 361 IRARLLGDAARGEAWLTTERQGDAARRALGHV-QAARALPDELATLE--------LEEAL 411 Query: 410 RLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 R +L +TG E ++D +F FC+GK Sbjct: 412 R----ALNDLTGRDVTEDVVDAVFRNFCVGK 438 >gi|15896965|ref|NP_350314.1| tRNA modification GTPase TrmE [Clostridium acetobutylicum ATCC 824] gi|21363021|sp|Q97CW2|MNME_CLOAB RecName: Full=tRNA modification GTPase mnmE gi|15026841|gb|AAK81654.1|AE007868_10 Predicted GTPase, ThdF family [Clostridium acetobutylicum ATCC 824] gi|325511142|gb|ADZ22778.1| tRNA modification GTPase TrmE [Clostridium acetobutylicum EA 2018] Length = 459 Score = 226 bits (576), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 161/464 (34%), Positives = 261/464 (56%), Gaps = 34/464 (7%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFG-----L 56 E +TI A+ST S ISIIR+SG + + F K KK + +G Sbjct: 3 EFDTIAAISTAIGNSGISIIRVSGKEALSIVDKVFKGKSKKGIIEMNTYTMRYGNIVELS 62 Query: 57 DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 +G I+D+ ++ P+SFTGE+ E + HGG+ +LEE+ + RLA PGEF++R Sbjct: 63 NGDIIDEVIVSFMKGPKSFTGENVVEVNCHGGMYPTKRVLEEIIR-AGARLAEPGEFTKR 121 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NG++DL +AE++ D+I+S+TE+ + ++ G +S + ++ I + IEA + Sbjct: 122 AFLNGRLDLSQAEAVMDIINSKTELSMKSAVAQSEGVISREINKLRQRILEIIAHIEATV 181 Query: 177 DFSEEEDVQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233 D+ E+ D++ +++ V LNDIL +I I G+I+R G VI+G N GKS Sbjct: 182 DYPED-DLEEVTAENVSKDLNDIL---KEIDELILSADEGKILREGLNTVIIGKPNVGKS 237 Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293 SL N L + AIVTDIPGTTRDV+ +++ G +KI DTAGIRET+D++EK G++R+ Sbjct: 238 SLLNLLLDEKRAIVTDIPGTTRDVIEEYINISGIPIKIVDTAGIRETEDVIEKMGVERSK 297 Query: 294 LEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTKSDLYSTYTE------EY 339 ++ENADLI+ + I+S K+ I + K+ +I + K DL + + Sbjct: 298 EKMENADLIIFM--IDSSKKIDAEDLEIIDYIKDKKYIVLLNKVDLKNREDKSKLDLLNK 355 Query: 340 DHLISSFTGE--GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE 397 D++I E GLE+L + I+++ + + ++ ++ RH L + + + Sbjct: 356 DNIIEFSVKEKVGLEKLKDTIENMFATGNLQHSNTMITNTRHKEALLRAREHCTTSLKAL 415 Query: 398 KDC-GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D +D+ + ++R A +LG+ITG E L+D IF FC+GK Sbjct: 416 QDTLAIDLASIDIRNAWTALGEITGETLQEDLIDKIFKDFCLGK 459 >gi|33866852|ref|NP_898411.1| tRNA modification GTPase TrmE [Synechococcus sp. WH 8102] gi|46577381|sp|Q7U3V6|MNME_SYNPX RecName: Full=tRNA modification GTPase mnmE gi|33639453|emb|CAE08837.1| putative thiophen / furan oxidation protein [Synechococcus sp. WH 8102] Length = 450 Score = 226 bits (576), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 143/444 (32%), Positives = 248/444 (55%), Gaps = 33/444 (7%) Query: 18 SAISIIRLSGPSCFQVCEFI--CKKKKPFPRKASLRYFFGL----DGRILDKGLLIVFPS 71 I+++R+SGP+ + C ++ S R +G +GR LD+ LL++ Sbjct: 19 GGIAVVRVSGPAAEATGRSVVHCPGRQVC---GSHRVMYGHVIDGEGRRLDEVLLLLMRG 75 Query: 72 PESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESL 131 P SFTGED E H HGG+ V +LE + P +R A PGEFS+RA NG++DL AE++ Sbjct: 76 PRSFTGEDVVEIHCHGGVVAVQQVLERVLAHPGVRRALPGEFSQRAVLNGRLDLTRAEAV 135 Query: 132 ADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNF 187 ++L+++ + L+M G+ G ++++L + +D+LT + EA +DF EED+ Sbjct: 136 SELVAARSRRAAELAMAGLDGGIQAKITALRERLLDQLTEL----EARVDF--EEDLPPL 189 Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247 +L+ + ++ + + ++ G+ + +R+G ++ ++G N GKSSL N L++++ AIV Sbjct: 190 DGDALLDGLQQVRQALLTLVADGERADALRSGLRVALVGRPNVGKSSLLNRLSRRERAIV 249 Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307 T++PGTTRD+L ++ LEG + + DTAGIR TDD VE+ GI R+ + AD++LL+ + Sbjct: 250 TELPGTTRDLLESEIVLEGVPITLLDTAGIRSTDDAVEQLGIARSEEALATADVVLLVLD 309 Query: 308 INSKKEIS-------FPKNIDFIFIGTKSDLYS-TYTEEYDHLISSFTGEGLEELINKI- 358 ++ P++I I + K+DL + + D +S+ G G E+L+ + Sbjct: 310 GHAGWTAEDAALLARIPEHIPRILVANKADLPAGALPQPVDVQLSALEGTGEEDLVQALL 369 Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTV--RYLEMASLNEKDCGLDIIAENLRLASVSL 416 + + + + ++ +R L + R E+A+ + D +LR A +L Sbjct: 370 ERCGAAGTEGVLLALNERQRDLAATAAAALGRSQEVAA---QQLPWDFWTIDLREAIRAL 426 Query: 417 GKITGCVDVEQLLDIIFSKFCIGK 440 G+ITG E +LD +FS+FCIGK Sbjct: 427 GEITGEELTEAVLDRVFSRFCIGK 450 >gi|329724170|gb|EGG60688.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis VCU144] Length = 459 Score = 226 bits (576), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 151/459 (32%), Positives = 254/459 (55%), Gaps = 27/459 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD---GRI 60 +TI ++ST AI I+RLSGP ++ + + K KK + +G +D Sbjct: 4 DTITSISTPMGEGAIGIVRLSGPQAIEIGDILYKGKKKLSEVETHTINYGHIIDPETNET 63 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +++ ++ V +P++FT ED E + HGGI +N ILE L R+A PGE+++RAF N Sbjct: 64 VEEVMVSVLRAPKTFTREDITEINCHGGILTINRILE-LTMTYGARMAEPGEYTKRAFLN 122 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G+IDL +AE++ D I S+T+ +++M + G LS L + + I + +E ++D+ E Sbjct: 123 GRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEILAQVEVNIDYPE 182 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 +DV++ ++ +L +K +I+ + G G+I+R G VI+G N GKSS+ N L Sbjct: 183 YDDVEDATTDFLLEQSKRIKEEINQLLETGAQGKIMREGLSTVIVGRPNVGKSSMLNNLI 242 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 + + AIVT++ GTTRDVL +++ G +++ DTAGIR+T+DIVEK G++R+ + AD Sbjct: 243 QDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDIVEKIGVERSRKALSEAD 302 Query: 301 LILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTY-TEEYDHLI-------- 343 LIL + +N+ + ++ KN D I I K+DL E +I Sbjct: 303 LILFV--LNNNEPLTEDDQTLFEVIKNEDVIVIINKTDLEQRLDVSELREMIGDMPLIQT 360 Query: 344 SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCG 401 S EG++EL +IK + + + + S+ RH+ L Q + ++ A E Sbjct: 361 SMLKQEGIDELEIQIKDLFFGGEVQNQDMTYVSNSRHISLLKQARQSIQDAIDAAESGIP 420 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+I G ++L+D +FS+FC+GK Sbjct: 421 MDMVQIDLTRTWEILGEIIGESASDELIDQLFSQFCLGK 459 >gi|190576473|ref|YP_001974318.1| tRNA modification GTPase TrmE [Stenotrophomonas maltophilia K279a] gi|190014395|emb|CAQ48043.1| putative tRNA modification GTPase [Stenotrophomonas maltophilia K279a] Length = 449 Score = 226 bits (576), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 146/450 (32%), Positives = 238/450 (52%), Gaps = 23/450 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF--PRKASLRYFFGLDGRILDK 63 +TI A+++ + ++RLSGP + P PR A DG ++D Sbjct: 8 DTIVAIASAPGAGGVGLLRLSGP---RAAAIANALGAPALRPRHAHYARLRDADGEVIDD 64 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 G+++ FP+P SFTGE+ E HG ++ ++ + R A PGEFS RAF NGK+ Sbjct: 65 GIVLWFPAPNSFTGEEVVELQGHGSPVLLQQLVARCIAL-GARQARPGEFSERAFLNGKL 123 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL +AE++ADLI++ R + + G S +++L +R +EA +DF++E Sbjct: 124 DLAQAEAIADLIAAGDNRAARAARRSLDGVFSRRIDAVVEQLVLLRIHVEAAIDFADEP- 182 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 + +V + ++D++ + G +R+G V++G NAGKSSL NALA + Sbjct: 183 LDTLGGAQVRRGLEQARSDLALLRRDAERGRRLRDGLHAVLIGPPNAGKSSLLNALAGSE 242 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303 AIVTDI GTTRD L + L+G + + DTAG+R+ D +E+EG++R +E+E DL L Sbjct: 243 RAIVTDIAGTTRDTLRETIRLDGLELTLVDTAGLRDGGDAIEREGMRRARVEIERTDLAL 302 Query: 304 LLKEINSKKE---------ISFPKNIDFIFIGTKSDLYSTYT--EEYDHL-ISSFTGEGL 351 ++ + + P ++I KSDL ++ D + +S+ TG GL Sbjct: 303 IVLDARDPAAGEAALGEAVAAVPHK---VYIHNKSDLLEALPALDDPDRVFVSAATGAGL 359 Query: 352 EELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLR 410 ++L +++SI S +++ + RH+ + + + + A L++ AE LR Sbjct: 360 DDLHARLRSIASAGAGEQVDGEFSARTRHVDAIERAQEHAQRADGELAHEHLELAAEELR 419 Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LA +LG+ITG + + LL IFS FCIGK Sbjct: 420 LAHDALGEITGQMSADDLLGRIFSSFCIGK 449 >gi|148240676|ref|YP_001226063.1| tRNA modification GTPase TrmE [Synechococcus sp. WH 7803] gi|205829179|sp|A5GPA1|MNME_SYNPW RecName: Full=tRNA modification GTPase mnmE gi|147849215|emb|CAK24766.1| tRNA modification GTPase [Synechococcus sp. WH 7803] Length = 460 Score = 226 bits (575), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 145/445 (32%), Positives = 230/445 (51%), Gaps = 33/445 (7%) Query: 20 ISIIRLSGPSCFQVCEFICKKKKPFPRKASL---RYFFGL-----DGRILDKGLLIVFPS 71 I++IRLSGP + + + P + S R +G G +D+ L+++ + Sbjct: 25 IAVIRLSGPQAQAAVQSVTR----IPGQQSWESHRVLYGHVLAGESGERIDEVLVLLMLA 80 Query: 72 PESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESL 131 P SFTGED E H HGG+ V +L + P +R A PGEFS+RA NG++DL AE++ Sbjct: 81 PRSFTGEDVVEIHCHGGVIAVQRVLARVLDQPGVRRALPGEFSQRAVLNGRLDLTRAEAI 140 Query: 132 ADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKE 191 +DL+++ ++ L+M G+ G + D+L S +EA +DF EED+ Sbjct: 141 SDLVAARSQRAAELAMAGVDGGIQKRITALRDRLLDQLSELEARVDF--EEDLPALDGAA 198 Query: 192 VLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIP 251 +L ++ ++ + + G++G +R G ++ ++G N GKSSL N L++++ AIVTD+P Sbjct: 199 LLEELQRVRGALQQLVKDGQVGAALRQGLRVALVGRPNVGKSSLLNRLSRRERAIVTDLP 258 Query: 252 GTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI--- 308 GTTRD+L ++ LEG + + DTAGIR T D VE+ GI R+ + +ADL+LLL ++ Sbjct: 259 GTTRDLLESEIVLEGVPITLLDTAGIRATSDAVERLGIARSHDALASADLVLLLFDLSVG 318 Query: 309 ----NSKKEISFPKNIDFIFIGTKSDLY------STYTEEYDHLISSFTGEGLEELINKI 358 + P + + +G K D+ T D +S+ TG G EL+ + Sbjct: 319 WTPDDEALRQRIPAAVPHLLVGNKVDVAVSDARAGTSGSAADIRLSASTGAGEAELVQAV 378 Query: 359 K---SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVS 415 L++ L + R ++A+ D +LR A S Sbjct: 379 LERCGALADGSLLLSLNQRQGDLAQQAADALARSAQVAA---DGLPWDFWTIDLRQAIHS 435 Query: 416 LGKITGCVDVEQLLDIIFSKFCIGK 440 LG+ITG E +LD IFS+FCIGK Sbjct: 436 LGEITGEELTESVLDRIFSRFCIGK 460 >gi|90194084|gb|ABD92603.1| ThdF [Bibersteinia trehalosi] Length = 436 Score = 226 bits (575), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 151/437 (34%), Positives = 238/437 (54%), Gaps = 29/437 (6%) Query: 19 AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGE 78 + I+R+SGP +V + + K PR A+ F DG +LD+G+ + F +P SFTGE Sbjct: 7 GVGILRISGPLAEKVAQEVLGKTLK-PRMANYLPFKDQDGTVLDQGIALFFKAPNSFTGE 65 Query: 79 DSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSE 138 D E HGG +++ +L+ + K+ +R+A GEFS +AF N K+DL +AE++ADLI + Sbjct: 66 DVLELQGHGGQIILDLLLQRILKIEGIRIARAGEFSEQAFLNDKLDLAQAEAIADLIDAT 125 Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LND 195 +E R +++ + GE S+ + +D + ++R+++EA +DF +EE + + ++ LN+ Sbjct: 126 SEQAARSALKSLQGEFSNKVNELVDSVIYLRTYVEAAIDFPDEE-IDFLADGKIEAKLNE 184 Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255 I+ + + QG I+R G K+VI G+ NAGKSSL NALA ++ AIVTDI GTTR Sbjct: 185 IIAQLDGVRKEAKQGS---ILREGMKVVIAGNPNAGKSSLLNALAGREAAIVTDIAGTTR 241 Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 DVL + ++G + I DTAG+RE D VEK GI+R + E+ AD +LL+ + Sbjct: 242 DVLREHIHIDGMPLHIIDTAGLREASDEVEKIGIQRAWDEIGQADHVLLMIDSTLSAADQ 301 Query: 316 F-----------PKNIDFIFIGTKSDLYSTY--TEEYDHL----ISSFTGEGLEELINKI 358 F P + I K DL E+ D+ +S+ T G+E L + Sbjct: 302 FQQEWADFLAKLPVKMPVTVIRNKVDLSGEQEGVEQQDNFTLIRLSAQTKVGVELLREHL 361 Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLASVSL 416 K + + + +RHL L +LE L + G +++AE LR+ +L Sbjct: 362 KKSMGYQ-SSTEGGFIARRRHLVALETAAEHLERGHTQLTQFMAG-ELLAEELRMVQNAL 419 Query: 417 GKITGCVDVEQLLDIIF 433 +ITG + LL IF Sbjct: 420 SEITGQFTSDDLLGNIF 436 >gi|227810188|gb|ACP41241.1| tRNA modification GTPase [Actinobacillus minor] Length = 416 Score = 226 bits (575), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 146/422 (34%), Positives = 239/422 (56%), Gaps = 29/422 (6%) Query: 22 IIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSA 81 I+R+SGP +V + + K+ PR A+ F DG +LD+G+ + F +P SFTGED Sbjct: 1 ILRVSGPLASEVAKAVVGKELK-PRLANYLPFMDTDGTVLDQGIALFFKAPNSFTGEDVL 59 Query: 82 EFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEM 141 E HGG +++ +L+ + ++ +R+A GEFS +AF N K+DL +AE++ADLI + +E Sbjct: 60 ELQGHGGQVILDLLLKRILEVKGVRIARAGEFSEQAFLNDKLDLAQAEAIADLIDATSEQ 119 Query: 142 QRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LNDILF 198 R +++ + GE S+ + +D + ++R+++EA +DF +EE + + ++ LNDI+ Sbjct: 120 AARSALKSLQGEFSNKVNELVDSVIYLRTYVEAAIDFPDEE-IDFLADGKIEAKLNDII- 177 Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 +++ + K G I+R G K+VI G NAGKSSL NALA ++ AIVT+I GTTRDVL Sbjct: 178 --TQLANVRKEAKQGSILREGMKVVIAGKPNAGKSSLLNALAGREAAIVTNIAGTTRDVL 235 Query: 259 TIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF-- 316 + ++G + I DTAG+R+ D VE+ GI+R + E+ AD +LL+ + + ++ F Sbjct: 236 REHIHIDGMPLHIIDTAGLRDASDEVERIGIQRAWDEIAQADHVLLMIDSSEQQADVFKT 295 Query: 317 ---------PKNIDFIFIGTKSDLY--STYTEEYDHL----ISSFTGEGLEELINKIKSI 361 P+NI I K DL S E+ D +S+ T G++ L +K Sbjct: 296 EWAEFLAKLPQNIPVTVIRNKVDLSGESEGLEQQDGFTIIRLSAQTKVGVDLLREHLKQS 355 Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLASVSLGKI 419 + + + +RHL L +LE L + G +++AE LR+ +L +I Sbjct: 356 MGYQ-SSTEGGFLARRRHLQALETAAEHLERGHVQLTQFFAG-ELLAEELRMVQNALSEI 413 Query: 420 TG 421 TG Sbjct: 414 TG 415 >gi|134082090|emb|CAK42207.1| unnamed protein product [Aspergillus niger] Length = 615 Score = 226 bits (575), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 124/312 (39%), Positives = 189/312 (60%), Gaps = 28/312 (8%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLDGR-----I 60 TI+A+ST + +AI+++R SGP+C Q+ + +C + P PR A +R + + + Sbjct: 64 TIYALSTASGRAAIAVVRASGPACVQIYKSLCPEAPLPRPRLAVVRTLYDPSQKPSPNTV 123 Query: 61 LDKGLLIV-FPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN----LRLANPGEFSR 115 LD G L++ FP P++ TGED E H+HGG A+V +L +++ N +R A PGEF+R Sbjct: 124 LDAGALVLYFPGPKTVTGEDVLELHLHGGPAIVKSVLSSISRTNNPDYTVRYAEPGEFTR 183 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF N ++DL + E+L D +S++TE QRRL++ G S LS Y QW +L + R +EA Sbjct: 184 RAFMNNRLDLPQIEALGDTLSADTEQQRRLAVRGASDALSKRYEQWRHQLLYARGELEAL 243 Query: 176 LDFSE----EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAG 231 +DFSE +E ++ S V + L+ I+ HI GE++RNG K+ +LG NAG Sbjct: 244 IDFSEDQHFDESTEDLVSS-VAAQVRALRAQIALHIQNASKGELLRNGIKVALLGAPNAG 302 Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDD-------- 282 KSSL N + ++ AIV+ GTTRD++ + +D+ G+ K+ D AGIR E +D Sbjct: 303 KSSLLNRIVGREAAIVSTEEGTTRDIVDVGVDIGGWYCKLGDMAGIRSEPNDPTGQKKTV 362 Query: 283 ---IVEKEGIKR 291 VE+EGI+R Sbjct: 363 VIGAVEQEGIRR 374 >gi|253573863|ref|ZP_04851205.1| tRNA modification GTPase TrmE [Paenibacillus sp. oral taxon 786 str. D14] gi|251846340|gb|EES74346.1| tRNA modification GTPase TrmE [Paenibacillus sp. oral taxon 786 str. D14] Length = 459 Score = 225 bits (574), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 155/458 (33%), Positives = 245/458 (53%), Gaps = 25/458 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKAS--LRYFFGLD---GRI 60 +TI A+ST S I++IR+SGP + + K P S + Y F +D G Sbjct: 4 DTIAAISTAVGESGIAVIRVSGPEAISEVGRLFRSKTALPEAESHTVHYGFIVDPATGEK 63 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 L++ L+ VF +P SFT ED E HGGI V +++ L + +RLA PGEF++RAF N Sbjct: 64 LEEVLVSVFRAPRSFTTEDVVEISTHGGIISVKRVMDLLLQQRGIRLAEPGEFTKRAFLN 123 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G+IDL +AE++ DLI S+++ ++++ + G+LS + L + IE ++D+ E Sbjct: 124 GRIDLSQAEAVIDLIRSKSDRAFSVALKQVEGQLSRQISKLRHTLIETLAHIEVNIDYPE 183 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 DV++ + + + I + + G+I+R G I+G N GKSSL NALA Sbjct: 184 H-DVESMTMAFIKEKCAEVSEGIDALLKTANQGKILREGITTAIVGRPNVGKSSLMNALA 242 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 +++ AIVTDIPGTTRDV+ + + +K+ DTAGIRET D+VE+ G++R+ V AD Sbjct: 243 RENKAIVTDIPGTTRDVIEEYVTINNIPLKLLDTAGIRETMDVVEQIGVERSKAAVSEAD 302 Query: 301 LIL---------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISS 345 LIL L++++ + I ID + + + EE +S Sbjct: 303 LILLVLNSAEALHEDEIALMEQLKGRSTIVLLNKIDLPQQLDREVVRRYFPEESIVELSV 362 Query: 346 FTGEGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG--L 402 T EGL+ L + I + + + + S+ RH+ L + + L A D G + Sbjct: 363 KTEEGLDHLEDAIARMFFGGELESNDLTYVSNVRHIALLKKAKQSLADA-YEAADSGIPI 421 Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 DI+ ++RLA LG++ G + L+D IFS+FC+GK Sbjct: 422 DILQIDVRLAWEQLGEVIGDSAPDALIDQIFSQFCLGK 459 >gi|251811361|ref|ZP_04825834.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis BCM-HMP0060] gi|282874718|ref|ZP_06283597.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis SK135] gi|251805110|gb|EES57767.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis BCM-HMP0060] gi|281296434|gb|EFA88949.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis SK135] Length = 459 Score = 225 bits (574), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 151/459 (32%), Positives = 254/459 (55%), Gaps = 27/459 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD---GRI 60 +TI ++ST AI I+RLSGP ++ + + K KK + +G +D Sbjct: 4 DTITSISTPMGEGAIGIVRLSGPQAIEIGDILYKGKKKLSEVETHTINYGHIIDPETNET 63 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +++ ++ V +P++FT ED E + HGGI +N ILE L R+A PGE+++RAF N Sbjct: 64 VEEVMVSVLRAPKTFTREDIIEINCHGGILTINRILE-LTMTYGARMAEPGEYTKRAFLN 122 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G+IDL +AE++ D I S+T+ +++M + G LS L + + I + +E ++D+ E Sbjct: 123 GRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEILAQVEVNIDYPE 182 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 +DV++ ++ +L +K +I+ + G G+I+R G VI+G N GKSS+ N L Sbjct: 183 YDDVEDATTDFLLEQSKRIKEEINQLLETGAQGKIMREGLSTVIVGRPNVGKSSMLNNLI 242 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 + + AIVT++ GTTRDVL +++ G +++ DTAGIR+T+DIVEK G++R+ + AD Sbjct: 243 QDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDIVEKIGVERSRKALSEAD 302 Query: 301 LILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTY-TEEYDHLI-------- 343 LIL + +N+ + ++ KN D I I K+DL E +I Sbjct: 303 LILFV--LNNNEPLTEDDQTLFEVIKNEDVIVIINKTDLEQRLDVSELREMIGDMPLIQT 360 Query: 344 SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCG 401 S EG++EL +IK + + + + S+ RH+ L Q + ++ A E Sbjct: 361 SMLKQEGIDELEIQIKDLFFGGEVQNQDMTYVSNSRHISLLKQARQSIQDAIDAAESGIP 420 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+I G ++L+D +FS+FC+GK Sbjct: 421 MDMVQIDLTRTWEILGEILGESASDELIDQLFSQFCLGK 459 >gi|312210491|emb|CBX90578.1| hypothetical protein [Leptosphaeria maculans] Length = 723 Score = 225 bits (574), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 124/339 (36%), Positives = 195/339 (57%), Gaps = 30/339 (8%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLD---- 57 H+ TI+A+ST +AI++IR+SG +C Q+ +C P PR+A+LR + + Sbjct: 76 HDDPTIYALSTAPGRAAIAVIRISGSACRQIYHALCPSAAFPKPRQATLRKLYTPNISPS 135 Query: 58 -GRILDKGLLIV-FPSPESFTGEDSAEFHVHGGIAVVNGILEEL-------------AKM 102 +LD G L++ FP+P + TGED E HVHGG A+V +L + Sbjct: 136 PATLLDSGALVLYFPAPSTVTGEDLLELHVHGGPAIVRAVLAAIPACTKVADAVSGGTAA 195 Query: 103 PNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWI 162 +R A PGEF+RRAF N ++DL + ESL + +S+ TE QR+LS+ G + L++ Y QW Sbjct: 196 AQIRYAEPGEFTRRAFANNRMDLPQIESLGETLSATTEEQRKLSVRGTTSSLAARYEQWR 255 Query: 163 DKLTHIRSFIEADLDFSEEEDVQNFSS---KEVLNDILFLKNDISSHISQGKLGEIIRNG 219 L R +EA +DFSE++ + V + L+ + +H++ GE++RNG Sbjct: 256 MLLLAARGELEALIDFSEDQHFDESPAVLCASVAKQVHSLRIHMEAHVANAVRGELLRNG 315 Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR- 278 + +LG NAGKSSL N + +D AIV+ GTTRDV+ + LDL G+LVK+ D AG+R Sbjct: 316 ISVALLGAPNAGKSSLLNRIVGRDAAIVSHEAGTTRDVVEVGLDLGGWLVKMGDMAGLRR 375 Query: 279 ------ETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311 E+ +EKEGI+R +D+++++++ ++ Sbjct: 376 AGLLGEESVGAIEKEGIRRAKQRAFESDVLVVVQDATTE 414 >gi|168494446|ref|ZP_02718589.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae CDC3059-06] gi|221231770|ref|YP_002510922.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae ATCC 700669] gi|225854518|ref|YP_002736030.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae JJA] gi|183575548|gb|EDT96076.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae CDC3059-06] gi|220674230|emb|CAR68765.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae ATCC 700669] gi|225724002|gb|ACO19855.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae JJA] gi|332075364|gb|EGI85833.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA41301] Length = 457 Score = 225 bits (574), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 150/462 (32%), Positives = 261/462 (56%), Gaps = 28/462 (6%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55 + E +TI A+ST AI I+RLSG F + + I K K + AS +G Sbjct: 2 ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIVQKIFKGKD-LNKVASHTLNYGHIIDP 60 Query: 56 LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 L G+++D+ ++ SP++FT ED E + HGGIAV N IL+ LA RLA PGEF++ Sbjct: 61 LTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 119 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG++DL +AE++ D+I ++T+ ++++ + G LS L ++ + + +E + Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 179 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +D+ E +DV+ ++ V + + +++ + + G+I+R G I+G N GKSSL Sbjct: 180 IDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPNVGKSSL 239 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N L ++D AIVTDI GTTRDV+ +++ G +K+ DTAGIRETDDIVE+ G++R+ Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGVERSKKA 299 Query: 296 VENADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTYTEEYDHL----- 342 ++ ADL+LL+ +N+ ++++ ++ + I + K+DL T E L Sbjct: 300 LKEADLVLLV--LNASEQLTAQDRQLLEISQDTNRIILLNKTDLPETI--ETSKLPEDVI 355 Query: 343 -ISSFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EK 398 IS + ++++ +I ++ + + + S+ RH+ + + V L+ + E Sbjct: 356 RISVLKNQNIDKIEERINNLFFENAGLVEQDATYLSNARHISLIEKAVESLQAVNQGLEL 415 Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+ITG ++L+ +FS+FC+GK Sbjct: 416 GMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457 >gi|167462792|ref|ZP_02327881.1| tRNA modification GTPase TrmE [Paenibacillus larvae subsp. larvae BRL-230010] Length = 457 Score = 225 bits (574), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 159/457 (34%), Positives = 248/457 (54%), Gaps = 23/457 (5%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----LDGRI 60 KETI A+ST IS+IR+SG + I K + P + +G DG Sbjct: 3 KETIAAISTPLGEGGISVIRVSGDESIAIVNKIFKSRTPLTEAETHTVHYGHIVDTDGHK 62 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +++ L+ V +P SFT ED E HGGI V +L+ L RLA PGEF++RAF N Sbjct: 63 VEEVLVTVMRAPRSFTTEDVVEVSCHGGIVSVKKVLDLLLDQ-GARLAEPGEFTKRAFLN 121 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G+IDL +AE++ DLI ++++ +++++ + G LS + +L + + +E ++D+ E Sbjct: 122 GRIDLTQAEAVIDLIRAKSDRAFQIALKQVDGILSKRIRKIRQELVELMAHVEVNIDYPE 181 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 DV + +L+ +I + + G+I+R G I+G N GKSSL NALA Sbjct: 182 H-DVAEMTHALILDKCNKGIQEIDFLLHTAQQGKILREGIVTAIVGKPNVGKSSLMNALA 240 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 +++ AIVTDIPGTTRDV+ +++ G +K+ DTAGIRET D+VE+ G++R+ + AD Sbjct: 241 QENRAIVTDIPGTTRDVIEEYVNVGGIPLKLLDTAGIRETTDVVEQIGVERSRSALSEAD 300 Query: 301 LILLL------KEINSKKEISFPKNIDFIFIGTKSDL---------YSTYTEEYDHLISS 345 LILL+ E + +S K+ + I K+DL + Y +E +S Sbjct: 301 LILLVLNSSEPLEEEELRLLSQLKDRQTLIILNKTDLPLGLHLEDICNLYPKEQVVKLSL 360 Query: 346 FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLD 403 +GLE+L I + + + + S+ RH++ L Q + L+ A NE +D Sbjct: 361 IQQKGLEDLEKAISGLFFEGRLESGDMNYVSNVRHIHLLKQAKQSLQDAIEANENGVPID 420 Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +I +LR A LG+I G E L+D IFS+FC+GK Sbjct: 421 MIQIDLRAAWEQLGEIIGDSVAESLIDQIFSQFCLGK 457 >gi|27469335|ref|NP_765972.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis ATCC 12228] gi|57865942|ref|YP_187603.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis RP62A] gi|293367584|ref|ZP_06614237.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis M23864:W2(grey)] gi|32171815|sp|Q8CMN5|MNME_STAES RecName: Full=tRNA modification GTPase mnmE gi|81675521|sp|Q5HS36|MNME_STAEQ RecName: Full=tRNA modification GTPase mnmE gi|27316885|gb|AAO06060.1|AE016752_93 putative thiophene and furan oxidation protein [Staphylococcus epidermidis ATCC 12228] gi|57636600|gb|AAW53388.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis RP62A] gi|291318297|gb|EFE58690.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis M23864:W2(grey)] gi|329735775|gb|EGG72056.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis VCU028] Length = 459 Score = 225 bits (574), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 151/459 (32%), Positives = 254/459 (55%), Gaps = 27/459 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD---GRI 60 +TI ++ST AI I+RLSGP ++ + + K KK + +G +D Sbjct: 4 DTITSISTPMGEGAIGIVRLSGPQAIEIGDILYKGKKKLSEVETHTINYGHIIDPETNET 63 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +++ ++ V +P++FT ED E + HGGI +N ILE L R+A PGE+++RAF N Sbjct: 64 VEEVMVSVLRAPKTFTREDIIEINCHGGILTINRILE-LTMTYGARMAEPGEYTKRAFLN 122 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G+IDL +AE++ D I S+T+ +++M + G LS L + + I + +E ++D+ E Sbjct: 123 GRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEILAQVEVNIDYPE 182 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 +DV++ ++ +L +K +I+ + G G+I+R G VI+G N GKSS+ N L Sbjct: 183 YDDVEDATTDFLLEQSKRIKEEINQLLETGAQGKIMREGLSTVIVGRPNVGKSSMLNNLI 242 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 + + AIVT++ GTTRDVL +++ G +++ DTAGIR+T+DIVEK G++R+ + AD Sbjct: 243 QDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDIVEKIGVERSRKALSEAD 302 Query: 301 LILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTY-TEEYDHLI-------- 343 LIL + +N+ + ++ KN D I I K+DL E +I Sbjct: 303 LILFV--LNNNEPLTEDDQTLFEVIKNEDVIVIINKTDLEQRLDVSELREMIGDMPLIQT 360 Query: 344 SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCG 401 S EG++EL +IK + + + + S+ RH+ L Q + ++ A E Sbjct: 361 SMLKQEGIDELEIQIKDLFFGGEVQNQDMTYVSNSRHISLLKQARQSIQDAIDAAESGIP 420 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+I G ++L+D +FS+FC+GK Sbjct: 421 MDMVQIDLTRTWEILGEIIGESASDELIDQLFSQFCLGK 459 >gi|327398259|ref|YP_004339128.1| tRNA modification GTPase mnmE [Hippea maritima DSM 10411] gi|327180888|gb|AEA33069.1| tRNA modification GTPase mnmE [Hippea maritima DSM 10411] Length = 453 Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 160/464 (34%), Positives = 259/464 (55%), Gaps = 38/464 (8%) Query: 2 NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DG 58 H+++ I A++TG +AI IIR+SG C ++ E I KK P+ KA+ Y+ + G Sbjct: 3 QHDEDIIAAIATGYTEAAIGIIRVSGKGCLELLEKIFTKKPPY--KANRLYYGHITDKQG 60 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 ++LD+ L+ +F +P S+TGEDS E + HGG+ V+N +LE + + RLA PGEF++RAF Sbjct: 61 KVLDEVLVSIFKAPHSYTGEDSFEINCHGGLVVLNSVLERVME-AGARLAQPGEFTKRAF 119 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NGK+DL +AE++A +IS++++ ++ + G SS + +++ ++ + E +D Sbjct: 120 LNGKLDLSQAEAVAKVISAKSKRAVDVAQRQLQGNFSSKLDEIREQILYLMAENEVRIDH 179 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 EE D+ + S++E + I ++N + + + G + G + ++G N GKSSL N Sbjct: 180 PEE-DLSDVSTEEKIRTISDIQNKLKQILRAAEFGNHLFEGVILALVGKPNVGKSSLLNL 238 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 + + AIVTDIPGTTRDV+ ++ G I DTAGIR+T+D VEK G+KR+ ++ Sbjct: 239 ITGSERAIVTDIPGTTRDVVKEQFNINGVPFSILDTAGIRKTNDTVEKIGVKRSLKAIDE 298 Query: 299 ADLILLL------------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEE---YDHL- 342 AD++L + K I K + P I I K+DL ++ ++HL Sbjct: 299 ADIVLAIFDGSNDLTQEDKKLIERLKSSAKP----IIAILNKTDLGIKINKDNLPFEHLL 354 Query: 343 -ISSFTGEGLEELINKIKSI-LSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMASLNEKD 399 +S +G+GL++L + +I L S+ S K+ L Q L+ N+ D Sbjct: 355 ELSCKSGKGLDKLEKTLSNIALGGVDDSQIVSLNASQKQSLKKAIQMCEQLKNDIDNDID 414 Query: 400 ---CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G+D +A L V +GKIT E +LD++F KFCIGK Sbjct: 415 PALIGVDFMALTDYLDEV-IGKITN----EDMLDVMFKKFCIGK 453 >gi|322381368|ref|ZP_08055371.1| tRNA modification GTPase TrmE-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154944|gb|EFX47215.1| tRNA modification GTPase TrmE-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 460 Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 159/457 (34%), Positives = 248/457 (54%), Gaps = 23/457 (5%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----LDGRI 60 KETI A+ST IS+IR+SG + I K + P + +G DG Sbjct: 6 KETIAAISTPLGEGGISVIRVSGDESIAIVNKIFKSRTPLTEAETHTVHYGHIVDTDGHK 65 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +++ L+ V +P SFT ED E HGGI V +L+ L RLA PGEF++RAF N Sbjct: 66 VEEVLVTVMRAPRSFTTEDVVEVSCHGGIVSVKKVLDLLLDQ-GARLAEPGEFTKRAFLN 124 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G+IDL +AE++ DLI ++++ +++++ + G LS + +L + + +E ++D+ E Sbjct: 125 GRIDLTQAEAVIDLIRAKSDRAFQIALKQVDGILSKRIRKIRQELVELMAHVEVNIDYPE 184 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 DV + +L+ +I + + G+I+R G I+G N GKSSL NALA Sbjct: 185 H-DVAEMTHALILDKCNKGIQEIDFLLHTAQQGKILREGIVTAIVGKPNVGKSSLMNALA 243 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 +++ AIVTDIPGTTRDV+ +++ G +K+ DTAGIRET D+VE+ G++R+ + AD Sbjct: 244 QENRAIVTDIPGTTRDVIEEYVNVGGIPLKLLDTAGIRETTDVVEQIGVERSRSALSEAD 303 Query: 301 LILLL------KEINSKKEISFPKNIDFIFIGTKSDL---------YSTYTEEYDHLISS 345 LILL+ E + +S K+ + I K+DL + Y +E +S Sbjct: 304 LILLVLNSSEPLEEEELRLLSQLKDRQTLIILNKTDLPLGLHLEDICNLYPKEQVVKLSL 363 Query: 346 FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLD 403 +GLE+L I + + + + S+ RH++ L Q + L+ A NE +D Sbjct: 364 IQQKGLEDLEKAISGLFFEGRLESGDMNYVSNVRHIHLLKQAKQSLQDAIEANENGVPID 423 Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +I +LR A LG+I G E L+D IFS+FC+GK Sbjct: 424 MIQIDLRAAWEQLGEIIGDSVAESLIDQIFSQFCLGK 460 >gi|227810186|gb|ACP41240.1| tRNA modification GTPase [Actinobacillus minor] Length = 420 Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 146/422 (34%), Positives = 239/422 (56%), Gaps = 29/422 (6%) Query: 22 IIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSA 81 I+R+SGP +V + + K+ PR A+ F DG +LD+G+ + F +P SFTGED Sbjct: 2 ILRVSGPLANEVAKAVVGKELK-PRLANYLPFMDTDGTVLDQGIALFFKAPNSFTGEDVL 60 Query: 82 EFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEM 141 E HGG +++ +L+ + ++ +R+A GEFS +AF N K+DL +AE++ADLI + +E Sbjct: 61 ELQGHGGQVILDLLLKRILEVKGVRIARAGEFSEQAFLNDKLDLAQAEAIADLIDATSEQ 120 Query: 142 QRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LNDILF 198 R +++ + GE S+ + +D + ++R+++EA +DF +EE + + ++ LNDI+ Sbjct: 121 AARSALKSLQGEFSNKVNELVDSVIYLRTYVEAAIDFPDEE-IDFLADGKIEAKLNDII- 178 Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 +++ + K G I+R G K+VI G NAGKSSL NALA ++ AIVT+I GTTRDVL Sbjct: 179 --TQLANVRKEAKQGSILREGMKVVIAGKPNAGKSSLLNALAGREAAIVTNIAGTTRDVL 236 Query: 259 TIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF-- 316 + ++G + I DTAG+R+ D VE+ GI+R + E+ AD +LL+ + + ++ F Sbjct: 237 REHIHIDGMPLHIIDTAGLRDASDEVERIGIQRAWDEIAQADHVLLMIDSSEQQADVFKT 296 Query: 317 ---------PKNIDFIFIGTKSDLY--STYTEEYDHL----ISSFTGEGLEELINKIKSI 361 P+NI I K DL S E+ D +S+ T G++ L +K Sbjct: 297 EWAEFLAKLPQNIPVTVIRNKVDLSGESEGLEQQDGFTLIRLSAQTKVGVDLLREHLKQS 356 Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLASVSLGKI 419 + + + +RHL L +LE L + G +++AE LR+ +L +I Sbjct: 357 MGYQ-SSTEGGFLARRRHLQALETAAEHLERGHVQLTQFFAG-ELLAEELRMVQNALSEI 414 Query: 420 TG 421 TG Sbjct: 415 TG 416 >gi|229824620|ref|ZP_04450689.1| hypothetical protein GCWU000282_01967 [Catonella morbi ATCC 51271] gi|229785991|gb|EEP22105.1| hypothetical protein GCWU000282_01967 [Catonella morbi ATCC 51271] Length = 460 Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 158/473 (33%), Positives = 252/473 (53%), Gaps = 49/473 (10%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRK-----ASLRYFFG-- 55 + ++TI A+ST AI ++RLSGP E I + FP K AS +G Sbjct: 2 YTQDTIVAISTALGEGAIGLVRLSGP------EAIAIANRLFPEKDLSQVASHTIHYGHI 55 Query: 56 ---LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGE 112 G++LD+ + V +P S+T ED E + HGGI + IL RLA PGE Sbjct: 56 QDPQSGQVLDEVMTSVMKAPRSYTTEDVVEINGHGGIVAIQSILNACLSQ-GARLAEPGE 114 Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172 F++RAF NG+IDL +AE++ DLIS++T + +M + G L Q D + + + + Sbjct: 115 FTQRAFLNGRIDLSQAEAIMDLISAKTNRAKDAAMSQLQGSLKHKIRQLRDTMLNTLAQV 174 Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232 E +D+ E +DV+ S +++ + +++++ + + Q G++ R G K I+G N GK Sbjct: 175 EVTIDYPEYDDVEELSLQQLASTAELVQSEVRAILRQATQGKLFREGIKTAIIGRPNVGK 234 Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292 SSL N L +D AIVTDI GTTRD + + ++G + I DTAGIR TD++VE+ G++++ Sbjct: 235 SSLLNYLIGEDKAIVTDIAGTTRDTIEEYISIKGVPLHIIDTAGIRHTDEVVEQIGVEKS 294 Query: 293 FLEVENADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTYTEE--YDHL 342 +E+ADLILL+ +N + + +N I + K DL + ++ E HL Sbjct: 295 RAMIESADLILLI--LNQAQALDPMDLELLELTQNKARIILLNKQDLPNQWSIEDLAGHL 352 Query: 343 --------ISSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA 393 S T +GL L + I + LS + + + RH + L+Q +A Sbjct: 353 QDDSDIIKTSVLTEDGLTALEDAISARFLSGNLQSTDLNYLLNSRHTHLLNQA-----LA 407 Query: 394 SLNE--KDCGL----DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 SL+E + C + D+I + A +LG+ITG ++LL +FS+FC+GK Sbjct: 408 SLDEVIQSCAMSLPVDLIQIDYTRAWDALGEITGDSVQDELLTKLFSQFCLGK 460 >gi|300774015|ref|ZP_07083884.1| tRNA modification GTPase TrmE [Sphingobacterium spiritivorum ATCC 33861] gi|300760186|gb|EFK57013.1| tRNA modification GTPase TrmE [Sphingobacterium spiritivorum ATCC 33861] Length = 458 Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 158/455 (34%), Positives = 250/455 (54%), Gaps = 20/455 (4%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-DGR-I 60 ++ETI A++T AI++IRLSG ++ + + K + + +F + DG I Sbjct: 7 QQQETIVALATANGNGAIAVIRLSGKDAIEIANQVFRGKDLSAQPSHTVHFGTIRDGEEI 66 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+ L+ +F P S+T E E H ++ I+ L + R A PGEF+ RAF N Sbjct: 67 LDEVLVTLFVGPNSYTKEHVVEISTHNSKYIIERIISLLIR-KGARAAKPGEFTLRAFLN 125 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G +DL +AE++ADLI+S + +++M+ M G S+ + D L H S IE +LDFSE Sbjct: 126 GGMDLSQAEAVADLIASNSAASHQIAMQQMRGGFSNQLRRLRDDLIHFASLIELELDFSE 185 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQG-KLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 E DV+ F++++ L ++ N + + Q + G +++NG +VI G N GKS+L NAL Sbjct: 186 E-DVE-FANRDQLKQLILQINSVVRKLIQSFEQGNVLKNGVPVVIAGKPNVGKSTLLNAL 243 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 ++ AIV+DI GTTRD + ++++ G + DTAGIRET D++E +G++RT +++ A Sbjct: 244 LNEERAIVSDIAGTTRDTIEDEINIHGVTFRFIDTAGIRETVDVIEAKGVERTREKMKQA 303 Query: 300 DLILLL--------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTE-EYDHL----ISSF 346 LI+ L ++ ++ E NI F+ I KSDL + EY L IS+ Sbjct: 304 RLIIYLFDPVQDTIADVETQLEEVRSLNIPFVTIINKSDLLTEEQRAEYRTLSPVFISAK 363 Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDII 405 G+EEL +++ ++ + ++ RH+ L T L + D + Sbjct: 364 EQIGVEELKDELLRQVNLANLNTDDVMVTNIRHVEALQHTEDSLSRVLFGIDNPVTSDFL 423 Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A ++R A LG+ITG V + LLD IFSKFCIGK Sbjct: 424 AMDIRQALYHLGEITGSVSTDDLLDNIFSKFCIGK 458 >gi|223932526|ref|ZP_03624527.1| tRNA modification GTPase TrmE [Streptococcus suis 89/1591] gi|302024152|ref|ZP_07249363.1| tRNA modification GTPase TrmE [Streptococcus suis 05HAS68] gi|330833106|ref|YP_004401931.1| tRNA modification GTPase TrmE [Streptococcus suis ST3] gi|223898797|gb|EEF65157.1| tRNA modification GTPase TrmE [Streptococcus suis 89/1591] gi|329307329|gb|AEB81745.1| tRNA modification GTPase TrmE [Streptococcus suis ST3] Length = 457 Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 157/462 (33%), Positives = 260/462 (56%), Gaps = 28/462 (6%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLD- 57 + E +TI A+ST AI I+RLSG F + + K K P SL Y +D Sbjct: 2 ITKEFDTITAISTPLGEGAIGIVRLSGTDAFAIASKVFKGKDLATVPSH-SLNYGHIIDP 60 Query: 58 --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 G++LD+ +L V SP++FT ED E + HGGIAV N IL+ L + R+A PGEF++ Sbjct: 61 ATGQVLDEVILGVMRSPKTFTREDVIEINTHGGIAVTNEILQLLIRQ-GARMAEPGEFTK 119 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG++DL +AE++ D+I ++T+ ++ + G LS L ++ + + +E + Sbjct: 120 RAFLNGRVDLTQAEAVMDVIRAKTDKAMHNAVRQLDGSLSQLINDTRQEILNTLAQVEVN 179 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +D+ E +DV+ +++ V L + + + + + G+I+R G I+G N GKSSL Sbjct: 180 IDYPEYDDVEEATTELVREKTLQFQALLENLLRTARRGKILREGIATAIIGRPNVGKSSL 239 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N L +++ AIVTDI GTTRDV+ ++++G +K+ DTAGIRETDDIVEK G++R+ Sbjct: 240 LNNLLREEKAIVTDIAGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDIVEKIGVERSKKA 299 Query: 296 VENADLILLLKEINSKKEIS-FPKNI-------DFIFIGTKSDLYSTYTEEYDHL----- 342 +E ADLILL+ +N+ + ++ +N+ + I + K+DL E D L Sbjct: 300 LEEADLILLV--LNASEPLTEQDRNLLAISDLANRIVLLNKTDLEEQI--EADQLPEDVI 355 Query: 343 -ISSFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EK 398 IS + ++++ KI + + + + S+ RH+ + Q V+ L+ + E Sbjct: 356 RISVLKNQNIDQIEEKINQLFFENAGLVEQDATYLSNSRHISLIEQAVQSLQAVNDGLEM 415 Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+ITG ++L+ +FS+FC+GK Sbjct: 416 GMPVDLLQVDLTRCWQILGEITGDAAPDELITQLFSQFCLGK 457 >gi|224475497|ref|YP_002633103.1| tRNA modification GTPase TrmE [Staphylococcus carnosus subsp. carnosus TM300] gi|222420104|emb|CAL26918.1| putative tRNA modification GTPase TrmE [Staphylococcus carnosus subsp. carnosus TM300] Length = 460 Score = 225 bits (573), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 152/460 (33%), Positives = 251/460 (54%), Gaps = 29/460 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD--- 62 +TI ++ST AI I+RLSG ++ + + K KKP S +G I+D Sbjct: 5 DTITSISTPMGEGAIGIVRLSGKEAVEITDKLYKGKKPLAEVESHTINYG---HIVDPET 61 Query: 63 -----KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 + ++ V +P++FT ED E + HGGI +N +LE L RLA PGE+++RA Sbjct: 62 NEVVEEVMVSVLRAPKTFTREDIVEINCHGGILTINHVLE-LTMSYGARLAEPGEYTKRA 120 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NG+IDL +AE++ D I S+T+ +++M + G LS + + + I + +E ++D Sbjct: 121 FLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDMIKRQRQSILEILAQVEVNID 180 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 + E +DV++ +++ +L +K DI ++ G G+I+R G VI+G N GKSS+ N Sbjct: 181 YPEYDDVEDATTEFLLKQSKEIKEDIDKLLATGTQGKIMREGLSTVIVGKPNVGKSSMLN 240 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 L + + AIVT++ GTTRDVL +++ G +++ DTAGIRET+DIVEK G++R+ + Sbjct: 241 NLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRETEDIVEKIGVERSRKALS 300 Query: 298 NADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYT-EEYDHLI------- 343 ADLIL + N +K KN D I I K+DL +E ++ Sbjct: 301 EADLILFVLNYNEGLTEEDRKLYEVIKNEDAIIIVNKTDLEQHLDLDEVKAMVGDMPVIE 360 Query: 344 -SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDC 400 S EG+++L +I+ + + + + S+ RH+ L Q ++ A E Sbjct: 361 TSMLKQEGIDQLEEQIRDLFFGGEVQNQDMTYVSNSRHISLLKQARNAIQDAIDAAEAGV 420 Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+I G ++L+D +FS+FC+GK Sbjct: 421 PMDMVQIDLTRTWQILGEIIGESASDELIDQLFSQFCLGK 460 >gi|307704774|ref|ZP_07641670.1| tRNA modification GTPase TrmE [Streptococcus mitis SK597] gi|307621683|gb|EFO00724.1| tRNA modification GTPase TrmE [Streptococcus mitis SK597] Length = 457 Score = 225 bits (573), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 151/460 (32%), Positives = 262/460 (56%), Gaps = 24/460 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55 + E +TI A+ST AI I+RLSG F + + I K K + AS +G Sbjct: 2 ITREFDTIAAISTPLGEGAIGIVRLSGTESFAIAQKIFKGKD-LSQVASHTLNYGHIVDP 60 Query: 56 LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 L G+++D+ ++ SP++FT ED E + HGGIAV N IL+ LA RLA PGEF++ Sbjct: 61 LTGKVMDEVMMGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 119 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG++DL +AE++ D+I ++T+ ++++ + G LS L ++ + + +E + Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 179 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +D+ E +DV+ ++ V + + +++ + + G+I+R G I+G N GKSSL Sbjct: 180 IDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPNVGKSSL 239 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N L ++D AIVTDI GTTRDV+ +++ G +K+ DTAGIRETDDIVE+ G++R+ Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGVERSKKA 299 Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTY-TEEYDH---LISS 345 ++ ADL+LL+ + ++ + ++ + I + K+DL T T E IS Sbjct: 300 LKEADLVLLVLNASEPLTSQDRQLLEISQDTNRIILLNKTDLPETIETSELPEDIIRISV 359 Query: 346 FTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGL 402 + ++++ +I ++ + + + S+ RH+ + + V L+ ++NE + G+ Sbjct: 360 LKNQNIDKIEERINNLFFENAGLVEQDATYLSNARHISLIEKAVESLQ--AVNEGLELGM 417 Query: 403 --DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D++ +L LG+ITG ++L+ +FS+FC+GK Sbjct: 418 PVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457 >gi|242243258|ref|ZP_04797703.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis W23144] gi|242233207|gb|EES35519.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis W23144] Length = 459 Score = 225 bits (573), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 151/459 (32%), Positives = 254/459 (55%), Gaps = 27/459 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD---GRI 60 +TI ++ST AI I+RLSGP ++ + + K KK + +G +D Sbjct: 4 DTITSISTPMGEGAIGIVRLSGPQAIEIGDILYKGKKKLSEVETHTINYGHIIDPETNET 63 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +++ ++ V +P++FT ED E + HGGI +N ILE L R+A PGE+++RAF N Sbjct: 64 VEEVMVSVLRAPKTFTREDIIEINCHGGILTINRILE-LTMTYGARMAEPGEYTKRAFLN 122 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G+IDL +AE++ D I S+T+ +++M + G LS L + + I + +E ++D+ E Sbjct: 123 GRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEILAQVEVNIDYPE 182 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 +DV++ ++ +L +K +I+ + G G+I+R G VI+G N GKSS+ N L Sbjct: 183 YDDVEDATTDFLLEQSKRIKEEINRLLETGAQGKIMREGLSTVIVGRPNVGKSSMLNNLI 242 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 + + AIVT++ GTTRDVL +++ G +++ DTAGIR+T+DIVEK G++R+ + AD Sbjct: 243 QDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDIVEKIGVERSRKALSEAD 302 Query: 301 LILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTY-TEEYDHLI-------- 343 LIL + +N+ + ++ KN D I I K+DL E +I Sbjct: 303 LILFV--LNNNEPLTEDDQTLFEVIKNEDVIVIINKTDLEQRLDVSELREMIGDMPLIQT 360 Query: 344 SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCG 401 S EG++EL +IK + + + + S+ RH+ L Q + ++ A E Sbjct: 361 SMLKQEGIDELEIQIKDLFFGGEVQNQDMTYVSNSRHISLLKQARQSIQDAIDAAESGIP 420 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+I G ++L+D +FS+FC+GK Sbjct: 421 MDMVQIDLTRTWEILGEIIGESASDELIDQLFSQFCLGK 459 >gi|295707338|ref|YP_003600413.1| tRNA modification GTPase TrmE [Bacillus megaterium DSM 319] gi|294804997|gb|ADF42063.1| tRNA modification GTPase TrmE [Bacillus megaterium DSM 319] Length = 462 Score = 225 bits (573), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 155/459 (33%), Positives = 248/459 (54%), Gaps = 25/459 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK--KKPFPRKASLRYFFG--LDGR-- 59 +TI A+ST AI+I+RLSG + + I K K AS +G +D + Sbjct: 5 DTIAAISTPMGEGAIAIVRLSGEEAITIADRIFKSVSNKRLTDVASHTIHYGHIVDPKTE 64 Query: 60 -ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 ++++ +L + P++FT ED E + HGGI VN +L+ L RLA PGEF++RAF Sbjct: 65 QVVEEVMLSIMKGPKTFTREDIIEINCHGGIVSVNRVLQ-LVIANGARLAEPGEFTKRAF 123 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG++DL +AE++ DLI ++T+ +++ M G LS L ++ + +E ++D+ Sbjct: 124 LNGRVDLSQAEAVMDLIRAKTDKAMNMAIGQMEGRLSKLVRHLRQEILETLAHVEVNIDY 183 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E +DV+ + + ++ ++ +I + G+I+R G VI+G N GKSSL N+ Sbjct: 184 PEYDDVEEMTHQVLIEKASNVRQEIDKLLQTSHQGKILREGLATVIIGRPNVGKSSLLNS 243 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L + AIVTDIPGTTRDV+ +++ G +++ DTAGIRET+DIVE+ G++R+ ++ Sbjct: 244 LVQDAKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDIVERIGVERSRQYLKE 303 Query: 299 ADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEY------DHLI--- 343 ADLILL+ N KK K +D I I K+DL E DH I Sbjct: 304 ADLILLVLNFNEELTDEDKKLFEAVKGMDVIVIVNKTDLEQKINLEEVQQFAGDHPIVTT 363 Query: 344 SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCG 401 S +G+++L I ++ + + S+ RH+ L+Q ++ A E Sbjct: 364 SLLQEQGVDQLEEAIAALFFGGTIESQDLTYLSNTRHIALLTQARGAIDEAITGIESGVP 423 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +DI+ +L LG+I G E L+D +FS+FC+GK Sbjct: 424 IDIVQIDLTRTWELLGEIIGDAVHESLIDQLFSQFCLGK 462 >gi|194398466|ref|YP_002037652.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae G54] gi|194358133|gb|ACF56581.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae G54] Length = 457 Score = 225 bits (573), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 149/460 (32%), Positives = 259/460 (56%), Gaps = 24/460 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55 + E +TI A+ST AI I+RLSG + F + + I K K + AS +G Sbjct: 2 ITREFDTIAAISTPLGEGAIGIVRLSGTNSFAIAQKIFKGKD-LSQVASHTLNYGHIVDP 60 Query: 56 LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 L G+++D+ ++ SP++FT ED E + HGGIAV N IL+ LA RLA PGEF++ Sbjct: 61 LTGKVMDEVMIGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 119 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG++DL +AE++ D+I ++T+ ++++ + G LS L ++ + + +E + Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 179 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +D+ E +DV+ ++ V + + +++ + + G+I+R G I+G N GKSSL Sbjct: 180 IDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPNVGKSSL 239 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N L ++D AIVTDI GTTRDV+ +++ G +K+ DTAGIRETDDIVE+ G++R+ Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGVERSKKA 299 Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------I 343 ++ ADL+LL+ + ++ + ++ + I + K+DL T E L I Sbjct: 300 LKEADLVLLVLNASEPLTAQDRQLLEISQDTNRIILLNKTDLPETI--ETSKLPEDVIRI 357 Query: 344 SSFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDC 400 S + ++++ +I ++ + + + S+ RH+ + + V L+ + E Sbjct: 358 SVLKNQNIDKIEERINNLFFENAGLVEQDATYLSNARHISLIEKAVESLQAVNQGLELGM 417 Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+ITG ++L+ +FS+FC+GK Sbjct: 418 PVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457 >gi|57651106|ref|YP_187524.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus COL] gi|87160757|ref|YP_495280.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|151222824|ref|YP_001333646.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus str. Newman] gi|161510921|ref|YP_001576580.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|258451369|ref|ZP_05699400.1| tRNA modification GTPase mnmE [Staphylococcus aureus A5948] gi|262049467|ref|ZP_06022339.1| tRNA modification GTPase [Staphylococcus aureus D30] gi|262051898|ref|ZP_06024113.1| tRNA modification GTPase [Staphylococcus aureus 930918-3] gi|282920717|ref|ZP_06328436.1| tRNA modification GTPase TrmE [Staphylococcus aureus A9765] gi|284023035|ref|ZP_06377433.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus 132] gi|294849826|ref|ZP_06790566.1| tRNA modification GTPase TrmE [Staphylococcus aureus A9754] gi|73919888|sp|Q5HCI3|MNME_STAAC RecName: Full=tRNA modification GTPase mnmE gi|123484183|sp|Q2FDE8|MNME_STAA3 RecName: Full=tRNA modification GTPase mnmE gi|172049081|sp|A6QKK2|MNME_STAAE RecName: Full=tRNA modification GTPase mnmE gi|189036213|sp|A8YYS1|MNME_STAAT RecName: Full=tRNA modification GTPase mnmE gi|57285292|gb|AAW37386.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus COL] gi|87126731|gb|ABD21245.1| tRNA modification GTPase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|150375624|dbj|BAF68884.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus str. Newman] gi|160369730|gb|ABX30701.1| GTP-binding protein [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257860899|gb|EEV83716.1| tRNA modification GTPase mnmE [Staphylococcus aureus A5948] gi|259160225|gb|EEW45254.1| tRNA modification GTPase [Staphylococcus aureus 930918-3] gi|259162464|gb|EEW47034.1| tRNA modification GTPase [Staphylococcus aureus D30] gi|282594125|gb|EFB99113.1| tRNA modification GTPase TrmE [Staphylococcus aureus A9765] gi|294823374|gb|EFG39803.1| tRNA modification GTPase TrmE [Staphylococcus aureus A9754] gi|315197916|gb|EFU28249.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus CGS01] gi|320141415|gb|EFW33258.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus MRSA131] gi|320144398|gb|EFW36163.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus MRSA177] Length = 459 Score = 225 bits (573), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 151/459 (32%), Positives = 254/459 (55%), Gaps = 27/459 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD---GRI 60 +TI ++ST AI I+RLSGP ++ + + K K S +G +D + Sbjct: 4 DTITSISTPMGEGAIGIVRLSGPQAVEIADKLYKGKHLLNDVPSHTINYGHIIDPESKEV 63 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +++ ++ V +P++FT ED E + HGGI +N +LE L R+A PGEF++RAF N Sbjct: 64 IEEVMVSVLRAPKTFTREDIIEINCHGGILTINRVLE-LTMTYGARMAEPGEFTKRAFLN 122 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G+IDL +AE++ D I S+T+ +++M + G LS L + + I + +E ++D+ E Sbjct: 123 GRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEILAQVEVNIDYPE 182 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 +DV++ +++ +L +K +I+ + G G+I+R G VI+G N GKSS+ N L Sbjct: 183 YDDVEDATTEFLLEQSKEIKQEINRLLDTGAQGKIMREGLSTVIVGKPNVGKSSMLNNLI 242 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 + + AIVT++ GTTRDVL +++ G +++ DTAGIRET+DIVEK G++R+ + AD Sbjct: 243 QDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRETEDIVEKIGVERSRKALSQAD 302 Query: 301 LILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTY-TEEYDHLI-------- 343 LIL + +N+ + ++ KN D I I K DL E +I Sbjct: 303 LILFV--LNNNEALTQEDYTLYEVVKNEDVIVIVNKMDLEQNIDINEVKDMIGDTPLIQT 360 Query: 344 SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCG 401 S EG++EL +I+ + + + + S+ RH+ L Q + ++ A E Sbjct: 361 SMLKQEGIDELEIQIRDLFFGGEVQNQDMTYVSNSRHISLLKQARQTIQDAIDAAESGVP 420 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+I G ++L+D +FS+FC+GK Sbjct: 421 MDMVQIDLTRTWEILGEIIGETASDELIDQLFSQFCLGK 459 >gi|329736122|gb|EGG72395.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis VCU045] Length = 459 Score = 225 bits (573), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 151/459 (32%), Positives = 254/459 (55%), Gaps = 27/459 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD---GRI 60 +TI ++ST AI I+RLSGP ++ + + K KK + +G +D Sbjct: 4 DTITSISTPMGEGAIGIVRLSGPQAIEIGDILYKGKKKLSEVETHTINYGHIIDPETNET 63 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +++ ++ V +P++FT ED E + HGGI +N ILE L R+A PGE+++RAF N Sbjct: 64 VEEVMVSVLRAPKTFTREDIIEINCHGGILTINRILE-LTMTYGARMAEPGEYTKRAFLN 122 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G+IDL +AE++ D I S+T+ +++M + G LS L + + I + +E ++D+ E Sbjct: 123 GRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEILAQVEVNIDYPE 182 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 +DV++ ++ +L +K +I+ + G G+I+R G VI+G N GKSS+ N L Sbjct: 183 YDDVEDATTDFLLEQSKRIKEEINQLLETGAQGKIMREGLSTVIVGRPNVGKSSMLNNLI 242 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 + + AIVT++ GTTRDVL +++ G +++ DTAGIR+T+DIVEK G++R+ + AD Sbjct: 243 QDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDIVEKIGVERSRNALSEAD 302 Query: 301 LILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTY-TEEYDHLI-------- 343 LIL + +N+ + ++ KN D I I K+DL E +I Sbjct: 303 LILFV--LNNNEPLTEDDQTLFEVIKNEDVIVIINKTDLEQRLDVSELREMIGDMPLIQT 360 Query: 344 SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCG 401 S EG++EL +IK + + + + S+ RH+ L Q + ++ A E Sbjct: 361 SMLKQEGIDELEIQIKDLFFGGEVQNQDMTYVSNSRHISLLKQARQSIQDAIDAAESGIP 420 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+I G ++L+D +FS+FC+GK Sbjct: 421 MDMVQIDLTRTWEILGEIIGESASDELIDQLFSQFCLGK 459 >gi|323487692|ref|ZP_08092950.1| tRNA modification GTPase trmE [Planococcus donghaensis MPA1U2] gi|323398426|gb|EGA91214.1| tRNA modification GTPase trmE [Planococcus donghaensis MPA1U2] Length = 461 Score = 225 bits (573), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 153/461 (33%), Positives = 257/461 (55%), Gaps = 25/461 (5%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFG-----L 56 E +TI A+ST + AI+I+RLSGP + + F K +A+ +G Sbjct: 2 EFDTIAAISTPSGEGAIAIVRLSGPEAVAIADKLFRAPSNKALASQATHTIHYGHLEDPA 61 Query: 57 DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 G I ++ ++ + +P++FT ED E + HGGI VN +LE L RLA PGEF++R Sbjct: 62 TGEIAEEVMVSLMKAPKTFTREDVIEINCHGGIVSVNRVLE-LVLRAGARLAEPGEFTKR 120 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NG+IDL +AE++ DLI ++T+ +++ M G+LS L G L + +E ++ Sbjct: 121 AFLNGRIDLSQAEAVMDLIRAKTDRAMDVALNQMEGKLSKLIGTLRQALLESIAQMEVNI 180 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D+ E +DV+ + +L +++++I + G+I+R G VILG N GKSSL Sbjct: 181 DYPEYDDVEEMTRPIMLEKSKWVRSEIEKLLQTSSQGKILREGLSTVILGRPNVGKSSLL 240 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N+L +++ AIVT+I GTTRD++ +++ G +++ DTAGIRET+DIVE+ G++R+ + Sbjct: 241 NSLVQENKAIVTEIAGTTRDIIEEYVNVRGVPLRLVDTAGIRETEDIVERIGVERSRKVL 300 Query: 297 ENADLILLL----KEINSKKEISFP--KNIDFIFIGTKSDLYSTYTEEY------DHLI- 343 + ADLIL + + + + E+ F K++D+I + K+DL E D L+ Sbjct: 301 KEADLILYVLNYAEALTPEDELLFETVKDMDYIVVINKTDLPQKIDLEQVQKLAGDKLLV 360 Query: 344 --SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKD 399 S EG+++L I ++ + + + S+ RH+ L Q + + A E + Sbjct: 361 TTSLVEEEGIDQLEEAIAALFFKGEIEAGDMTYVSNVRHIALLHQAHKTISDAIEAAEME 420 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D+I ++ LG+I G + LL+ +FS+FC+GK Sbjct: 421 VPVDMIQIDVTRTWELLGEIIGDTADDGLLNQLFSQFCLGK 461 >gi|260584383|ref|ZP_05852130.1| tRNA modification GTPase TrmE [Granulicatella elegans ATCC 700633] gi|260157901|gb|EEW92970.1| tRNA modification GTPase TrmE [Granulicatella elegans ATCC 700633] Length = 476 Score = 225 bits (573), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 160/470 (34%), Positives = 260/470 (55%), Gaps = 38/470 (8%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFI--CKKKKPFPRKA-SLRYFFGLD 57 M E +TI A+ST AI I+R+SG + I C K+ +K ++ Y +D Sbjct: 15 MQTEFDTIAAISTAPGEGAIGIVRISGDLAISIASSIYQCGTKQLEEQKTHTIHYGHIVD 74 Query: 58 ---GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114 G + D+ ++ V +P++FT ED E + HGGI +N +L+ + +M RLA PGEF+ Sbjct: 75 PKSGEVYDEVMVSVLRAPKTFTREDIVEINCHGGIVAINRVLQLVLRM-GARLAEPGEFT 133 Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174 +RAF NG+IDL +AE++ DLI ++T+ +L+M + G+LS L ++ + + +E Sbjct: 134 KRAFLNGRIDLSQAEAVMDLIRAKTDKSMQLAMRQLDGQLSHLIQNLRQEILNTLAQVEV 193 Query: 175 DLDFSEEEDVQNFS-------SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227 ++D+ E +DV+ + +++VL I L N S G+I+R+G K I+G Sbjct: 194 NIDYPEYDDVEEMTLQLLREKTQQVLQGIRALLNTASQ-------GKILRDGLKTAIVGR 246 Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKE 287 N GKSSL N L +++ AIVTDI GTTRD + +++ G +++ DTAGIRETDDIVEK Sbjct: 247 PNVGKSSLLNVLLREEKAIVTDIAGTTRDTIEEYVNVRGVPLQLIDTAGIRETDDIVEKI 306 Query: 288 GIKRTFLEVENADLILLL---KEINSKKEISF---PKNIDFIFIGTKSDLYSTYTEE--- 338 G++R+ ++ AD +LLL E +++I K + I + K+DL S ++E Sbjct: 307 GVERSRKALKEADFVLLLLNQSETLQEEDIRLLETTKGMKRIILFNKTDLPSKLSKEDIA 366 Query: 339 -YDHL-----ISSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYL- 390 Y + S EG+++L KI + + + S+ RH+ L + + L Sbjct: 367 PYAQVEEIVTTSMLNKEGIDQLEEKIAGYFFQGQMNERDATYLSNTRHIALLEKAEQALV 426 Query: 391 EMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E+ + E +D+I + A LG+ITG ++LL +FS+FC+GK Sbjct: 427 EVQNGIEMGMPVDLIQIDFTRAWDLLGEITGDSVQDELLTQLFSQFCLGK 476 >gi|168483087|ref|ZP_02708039.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae CDC1873-00] gi|172043445|gb|EDT51491.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae CDC1873-00] Length = 457 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 149/460 (32%), Positives = 258/460 (56%), Gaps = 24/460 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55 + E +TI A+ST AI I+RLSG F + + I K K + AS +G Sbjct: 2 ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKD-LSQVASHTLNYGHIVDP 60 Query: 56 LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 L G+++D+ ++ SP++FT ED E + HGGIAV N IL+ LA RLA PGEF++ Sbjct: 61 LTGKVMDEVMIGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 119 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG++DL +AE++ D+I ++T+ ++++ + G LS L ++ + + +E + Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 179 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +D+ E +DV+ ++ V + + +++ + + G+I+R G I+G N GKSSL Sbjct: 180 IDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPNVGKSSL 239 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N L ++D AIVTDI GTTRDV+ +++ G +K+ DTAGIRETDDIVE+ G++R+ Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGVERSKKA 299 Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------I 343 ++ ADL+LL+ + ++ + ++ + I + K+DL T E L I Sbjct: 300 LKEADLVLLVLNASEPLTAQDRQLLEISQDTNRIILLNKTDLPETI--ETSKLPEDVIRI 357 Query: 344 SSFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDC 400 S + ++++ +I ++ + + + S+ RH+ + + V L+ + E Sbjct: 358 SVLKNQNIDKIEERINNLFFENAGLVEQDATYLSNARHISLIEKAVESLQAVNQGLELGM 417 Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+ITG ++L+ +FS+FC+GK Sbjct: 418 PVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457 >gi|294501987|ref|YP_003565687.1| tRNA modification GTPase TrmE [Bacillus megaterium QM B1551] gi|294351924|gb|ADE72253.1| tRNA modification GTPase TrmE [Bacillus megaterium QM B1551] Length = 462 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 154/459 (33%), Positives = 248/459 (54%), Gaps = 25/459 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK--KKPFPRKASLRYFFG--LDGR-- 59 +TI A+ST AI+I+RLSG + + I K K AS +G +D + Sbjct: 5 DTIAAISTPMGEGAIAIVRLSGEEAITIADRIFKSVSNKRLTDVASHTIHYGHIVDPKTE 64 Query: 60 -ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 ++++ +L + P++FT ED E + HGGI VN +L+ L RLA PGEF++RAF Sbjct: 65 QVVEEVMLSIMKGPKTFTREDIIEINCHGGIVSVNRVLQ-LVIANGARLAEPGEFTKRAF 123 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG++DL +AE++ DLI ++T+ +++ M G LS L ++ + +E ++D+ Sbjct: 124 LNGRVDLSQAEAVMDLIRAKTDKAMNMAIGQMEGRLSKLVRHLRQEILETLAHVEVNIDY 183 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E +DV+ + + ++ ++ +I + G+I+R G VI+G N GKSSL N+ Sbjct: 184 PEYDDVEEMTHQVLIEKASNVRQEIDKLLQTSHQGKILREGLATVIIGRPNVGKSSLLNS 243 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L + AIVTDIPGTTRDV+ +++ G +++ DTAGIRET+DIVE+ G++R+ ++ Sbjct: 244 LVQDAKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDIVERIGVERSRQYLKE 303 Query: 299 ADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEY------DHLI--- 343 ADLILL+ N KK K +D I I K+DL E DH + Sbjct: 304 ADLILLVLNFNEELTDEDKKLFEAVKGMDVIVIVNKTDLEQKINLEEVQQFAGDHPVVTT 363 Query: 344 SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCG 401 S +G+++L I ++ + + S+ RH+ L+Q ++ A E Sbjct: 364 SLLQEQGIDQLEEAIAALFFGGTIESQDLTYLSNTRHIALLTQARGAIDEAITGIESGVP 423 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +DI+ +L LG+I G E L+D +FS+FC+GK Sbjct: 424 IDIVQIDLTRTWELLGEIIGDAVHESLIDQLFSQFCLGK 462 >gi|225870695|ref|YP_002746642.1| tRNA modification GTPase TrmE [Streptococcus equi subsp. equi 4047] gi|225700099|emb|CAW94188.1| tRNA modification GTPase TrmE [Streptococcus equi subsp. equi 4047] Length = 458 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 153/462 (33%), Positives = 256/462 (55%), Gaps = 28/462 (6%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55 + E +TI A+ST AI I+RLSG + + I K K AS +G Sbjct: 3 ITKEFDTIAAISTPLGEGAIGIVRLSGTKALDIAKSIFKGKD-LTTVASHTLNYGHIIKP 61 Query: 56 LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 G ++D+ ++ V +P++FT ED E + HGGIAV N IL+ L K R+A PGEF++ Sbjct: 62 STGEVIDEVMVSVMLAPKTFTREDVIEINTHGGIAVTNDILQLLIKQ-GARMAEPGEFTK 120 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG+IDL +AE++ DLI ++T+ ++++ + G LS L ++ + + +E + Sbjct: 121 RAFLNGRIDLTQAEAVMDLIRAKTDKAMSIAIKQLDGSLSQLISDTRQEILNTLAQVEVN 180 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +D+ E +DV+ ++ + + + + + K G+I+R G I+G N GKSSL Sbjct: 181 IDYPEYDDVEEMTTALLRDKTREFQTLLEQLLRTAKRGKILREGLSTAIIGRPNVGKSSL 240 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N L ++D AIVTDI GTTRDV+ ++++G +K+ DTAGIRETDD+VE+ G++R+ Sbjct: 241 LNTLLREDKAIVTDIAGTTRDVIEEYVNIKGIPLKLVDTAGIRETDDLVEQIGVERSKKA 300 Query: 296 VENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEEYDHL------I 343 ++ ADL+LL+ + K ++ ++ + I + K+DL E D L I Sbjct: 301 LQEADLVLLVLNASEKLTEQDKALLALSQDSNRIILLNKTDLEQVI--EKDQLPEEAIPI 358 Query: 344 SSFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK--- 398 S + ++ + ++I I + + S+ RH+ + Q V+ LE ++NE Sbjct: 359 SVLQNQNIDLIEDRINQIFFDHTGLIEQDATYLSNARHISLIEQAVQSLE--AVNEGLAL 416 Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L A LG+ITG ++L+ +FS+FC+GK Sbjct: 417 GMPVDLLQIDLTRAWEILGEITGDAAPDELITQLFSQFCLGK 458 >gi|319399917|gb|EFV88163.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis FRI909] Length = 459 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 151/459 (32%), Positives = 254/459 (55%), Gaps = 27/459 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD---GRI 60 +TI ++ST AI I+RLSGP ++ + + K KK + +G +D Sbjct: 4 DTITSISTPMGEGAIGIVRLSGPQAIEIGDILYKGKKKLSEVETHTINYGHIIDPETDET 63 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +++ ++ V +P++FT ED E + HGGI +N ILE L R+A PGE+++RAF N Sbjct: 64 VEEVMVSVLRAPKTFTREDIIEINCHGGILTINRILE-LTMTYGARMAEPGEYTKRAFLN 122 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G+IDL +AE++ D I S+T+ +++M + G LS L + + I + +E ++D+ E Sbjct: 123 GRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEILAQVEVNIDYPE 182 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 +DV++ ++ +L +K +I+ + G G+I+R G VI+G N GKSS+ N L Sbjct: 183 YDDVEDATTDFLLEQSKRIKEEINRLLETGAQGKIMREGLSTVIVGRPNVGKSSMLNNLI 242 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 + + AIVT++ GTTRDVL +++ G +++ DTAGIR+T+DIVEK G++R+ + AD Sbjct: 243 QDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDIVEKIGVERSRKALSEAD 302 Query: 301 LILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTY-TEEYDHLI-------- 343 LIL + +N+ + ++ KN D I I K+DL E +I Sbjct: 303 LILFV--LNNNEPLTEDDQTLFEVIKNEDVIVIINKTDLEQRLDVSELREMIGDMPLIQT 360 Query: 344 SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCG 401 S EG++EL +IK + + + + S+ RH+ L Q + ++ A E Sbjct: 361 SMLKQEGIDELEIQIKDLFFGGEVQNQDMTYVSNSRHISLLKQARQSIQDAIDAAESGIP 420 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+I G ++L+D +FS+FC+GK Sbjct: 421 MDMVQIDLTRTWEILGEIIGESASDELIDQLFSQFCLGK 459 >gi|154490812|ref|ZP_02030753.1| hypothetical protein PARMER_00729 [Parabacteroides merdae ATCC 43184] gi|154088560|gb|EDN87604.1| hypothetical protein PARMER_00729 [Parabacteroides merdae ATCC 43184] Length = 460 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 160/463 (34%), Positives = 248/463 (53%), Gaps = 31/463 (6%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFI----CKKKKPFPRKA-SLRYFFGLDGR 59 ++TI AVST I++IR+SGP +C I K +KA +LRY G Sbjct: 2 EDTICAVSTAPGAGGIAVIRISGPEAIAICNTIFVPRTAGKGLLSQKAYTLRYGSIRRGE 61 Query: 60 -ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 ++D+ L+ +F +P SFTGED+ E HG + + I++ L + R A PGE+++RAF Sbjct: 62 ELIDEVLIALFRAPHSFTGEDTVEITCHGSVYIQQQIMQLLIER-GCRSALPGEYTQRAF 120 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NGK+DL +AE++ADLI+S + Q RL++ M G S ++L HI S +E +LDF Sbjct: 121 MNGKMDLSQAEAVADLIASTSAGQHRLALNQMRGGFSHELKNLREQLLHITSLMELELDF 180 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 S+ E+++ E+ ++ IS + +G I+NG + I+G +NAGKS+L N Sbjct: 181 SDHEELEFADRSELSTLAAHIETVISRLANSFSVGNAIKNGIPVAIIGETNAGKSTLLNV 240 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L +D AIV+DI GTTRDV+ +++ G + DTAGIRET D +E GI+RTF +++ Sbjct: 241 LLNEDKAIVSDIHGTTRDVIEDTINIGGITFRFIDTAGIRETHDAIESIGIERTFQKLDQ 300 Query: 299 ADLILLL-------KEINSKKEISFPKN--IDFIFIGTKSDLYSTY----TEEYDHLISS 345 AD++L + +I E P++ I + K+DL + T+ +++ S Sbjct: 301 ADIVLWMIDAADASLQIAQLSEKILPRSEGKQLILVFNKADLLTDRQFKPTDLPENVQSI 360 Query: 346 FTGEGLEELINKIKSILSNKFKKLPFS----IPSHKRHLYHLSQTV----RYLEMASLNE 397 F E I+K++ +L S I ++ RH L+ + R E S N Sbjct: 361 FISAKKREHIDKLQDLLIQAAHIPSLSSNDVIVTNIRHYEALTHALESIHRVQEGLSANL 420 Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D I+++LR L I G V +Q+L IF +FCIGK Sbjct: 421 SG---DFISQDLRECIFHLSDIVGEVTTDQVLGNIFERFCIGK 460 >gi|90194132|gb|ABD92627.1| ThdF [Mannheimia ruminalis] Length = 436 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 145/436 (33%), Positives = 238/436 (54%), Gaps = 27/436 (6%) Query: 19 AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGE 78 + I+R+SGP V + + K P PR A+ F DG +LD+G+ + F +P SFTGE Sbjct: 7 GVGILRVSGPLAETVAQAVLGKTLP-PRIANYLPFKDEDGTVLDQGIALFFKAPNSFTGE 65 Query: 79 DSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSE 138 D E HGG +++ +L+ + ++ LR+A GEFS +AF N K+DL +AE++ADLI + Sbjct: 66 DVLELQGHGGQVILDLLLKRILQVKGLRIARAGEFSEQAFLNDKLDLAQAEAIADLIDAT 125 Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LND 195 +E R +++ + GE S + +D + ++R+++EA +DF +EE + + ++ LN+ Sbjct: 126 SEQAARSALKSLQGEFSHKINELVDSVIYLRTYVEAAIDFPDEE-IDFLADGKIEAKLNE 184 Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255 I+ + + QG I+R G K+VI G NAGKSSL NALA ++ AIVT+I GTTR Sbjct: 185 IIAQLDGVRREAKQGS---ILREGMKVVIAGRPNAGKSSLLNALAGREAAIVTNIAGTTR 241 Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 DVL + ++G + I DTAG+R+ D VE+ GI+R + E+ AD +LL+ + ++ Sbjct: 242 DVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIQRAWEEIAQADHVLLMIDSTEQQADQ 301 Query: 316 F-----------PKNIDFIFIGTKSDLYS-----TYTEEYDHL-ISSFTGEGLEELINKI 358 F P N+ I K DL +++ + +S+ T G++ L + Sbjct: 302 FRQEWAEFLAKLPANMPVTVIRNKVDLSGEPEGLIQVDDFTMIRLSAQTKVGVDLLREHL 361 Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAENLRLASVSLG 417 K + + + +RHL L +LE + + +++AE LR+ +L Sbjct: 362 KKSMGYQ-SSTEGGFLARRRHLQALETAAEHLERGHIQLTQFLAGELLAEELRMVQNALS 420 Query: 418 KITGCVDVEQLLDIIF 433 +ITG + LL IF Sbjct: 421 EITGQFTSDDLLGNIF 436 >gi|90194082|gb|ABD92602.1| ThdF [Mannheimia haemolytica] Length = 436 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 145/436 (33%), Positives = 238/436 (54%), Gaps = 27/436 (6%) Query: 19 AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGE 78 + I+R+SGP V + + K P PR A+ F DG +LD+G+ + F +P SFTGE Sbjct: 7 GVGILRVSGPLAETVAQAVLGKTLP-PRIANYLPFKDEDGTVLDQGIALFFKAPNSFTGE 65 Query: 79 DSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSE 138 D E HGG +++ +L+ + ++ LR+A GEFS +AF N K+DL +AE++ADLI + Sbjct: 66 DVLELQGHGGQVILDLLLKRILQVKGLRIARAGEFSEQAFLNDKLDLAQAEAIADLIDAT 125 Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LND 195 +E R +++ + GE S+ +D + ++R+++EA +DF +EE + + ++ LN+ Sbjct: 126 SEQAARSALKSLQGEFSNKINALVDSVIYLRTYVEAAIDFPDEE-IDFLADGKIEAKLNE 184 Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255 I+ + + QG I+R G K+VI G NAGKSSL NALA ++ AIVT+I GTTR Sbjct: 185 IIAQLDGVRREAKQGS---ILREGMKVVIAGRPNAGKSSLLNALAGREAAIVTNIAGTTR 241 Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 DVL + ++G + I DTAG+R+ D VE+ GI+R + E+ AD +LL+ + ++ Sbjct: 242 DVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIQRAWEEIAQADHVLLMIDSTEQQADQ 301 Query: 316 F-----------PKNIDFIFIGTKSDLYS-----TYTEEYDHL-ISSFTGEGLEELINKI 358 F P N+ I K DL +++ + +S+ T G++ L + Sbjct: 302 FRQEWAEFLAKLPANMPVTVIRNKVDLSGEQEGLIQVDDFTMIRLSAQTKVGVDLLREHL 361 Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAENLRLASVSLG 417 K + + + +RHL L +LE + + +++AE LR+ +L Sbjct: 362 KKSMGYQ-SSTEGGFLARRRHLQALETAAEHLERGHIQLTQFLAGELLAEELRMVQNALS 420 Query: 418 KITGCVDVEQLLDIIF 433 +ITG + LL IF Sbjct: 421 EITGQFTSDDLLGNIF 436 >gi|315659998|ref|ZP_07912856.1| tRNA modification GTPase TrmE [Staphylococcus lugdunensis M23590] gi|315494899|gb|EFU83236.1| tRNA modification GTPase TrmE [Staphylococcus lugdunensis M23590] Length = 471 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 151/457 (33%), Positives = 253/457 (55%), Gaps = 23/457 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD---GRI 60 +TI ++ST AI I+RLSGP ++ + + K K S +G +D + Sbjct: 16 DTITSISTPMGEGAIGIVRLSGPQAIEIGDKLYKGKYKLAEVDSHTINYGHIVDPETNEV 75 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +++ ++ V +P++FT ED E + HGGI +N +LE L R+A PGE+S+RAF N Sbjct: 76 VEEVMISVLRAPKTFTREDIIEINCHGGILTINRVLE-LTMTHGARMAEPGEYSKRAFLN 134 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G+IDL +AE++ D I S+T+ +++M + G LS L + + I + +E ++D+ E Sbjct: 135 GRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKRQRKSILEILAQVEVNIDYPE 194 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 +DV++ +++ +L +K +I + G G+I+R G VI+G N GKSS+ N L Sbjct: 195 YDDVEDATTEFLLEQSKNIKAEIDKLLETGAQGKIMREGLSTVIVGKPNVGKSSMLNNLI 254 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 + + AIVT++ GTTRDVL +++ G +++ DTAGIR+T+DIVEK G++R+ + AD Sbjct: 255 QDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDIVEKIGVERSRKALSQAD 314 Query: 301 LILLLKEIN---SKKEISF---PKNIDFIFIGTKSDLYSTYT-EEYDHLI--------SS 345 LIL + N +K++ + KN D I I K+DL EE +I S Sbjct: 315 LILFVLNYNEPLTKEDRTLFEVIKNEDVIVIVNKTDLAQQLNIEEVQEMIGNKPLIQTSM 374 Query: 346 FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLD 403 EG++EL +I+ + + + S+ RH+ L Q ++ A E +D Sbjct: 375 LKQEGIDELEIQIRDLFFGGDVQNQDMTYVSNSRHIALLKQARHAIQDAIDAAESGVPMD 434 Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++ +L LG+I G ++L++ +FS+FC+GK Sbjct: 435 MVQIDLTRTWEILGEIIGESASDELINQLFSQFCLGK 471 >gi|115252797|emb|CAK98233.1| putative trna modification gtpase protein [Spiroplasma citri] Length = 449 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 150/450 (33%), Positives = 260/450 (57%), Gaps = 17/450 (3%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR-ILDK 63 ++TI A +T + AI+IIR+SG +++ + KK + Y + DG+ I+D+ Sbjct: 3 EDTIIAPATAMVKQAIAIIRMSGVDSYKIINKVFSKK-VIQEGNQIYYGYLRDGKEIIDQ 61 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 +L F P SFTGED E + HGG+ V N I++ L K RLAN GEFS+RAF NGK+ Sbjct: 62 VILFCFQKPNSFTGEDIIEINCHGGVLVTNNIIKLLLK-NGARLANKGEFSQRAFLNGKL 120 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 +L++ +++ +L+++ + ++++ + + + L + D+L I + IE ++D+ E + Sbjct: 121 NLIQTDAINNLVNATNDTSAKIALNNLQNKNTYLISTYRDELLDIIANIEVNIDYPEYDG 180 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 V + +++E+ +L L+ I+ + K+G++I +G ++ILG N GKSSL NAL ++ Sbjct: 181 VGDLTTQELNQRLLILEQKINDLVKISKVGKMIDDGINVLILGKPNVGKSSLLNALMNEN 240 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303 AIV+++PGTTRD++ ++L + I DTAG+RET D +E+ GI++ +V NADLIL Sbjct: 241 KAIVSELPGTTRDIVEGKINLGPLTLNIIDTAGLRETVDKIEQIGIEKARQQVINADLIL 300 Query: 304 LLKE-----INSKKEIS-FPKNIDFIFIGTKSDLYSTYTE----EYDHLISSFTGEGLEE 353 ++ + IN E+ KN +++ + K+DL + T+ + + L+ S ++ Sbjct: 301 IVADNYADLINLNLELKELIKNKEYLLVLNKTDLLNMQTQKKNLQQNILLISALKRDIKS 360 Query: 354 LINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG--LDIIAENLR 410 LI+KI ++ + + K + S+ + + L + ++ A N G +DII +L Sbjct: 361 LIDKILNLYKTAQITKDDQLVLSNIKQISLLEKVANSIKNA-YNNSTSGFPVDIINVDLH 419 Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A LG I G E LL IFSK+C+GK Sbjct: 420 EAWEILGDILGENYEEDLLTTIFSKYCLGK 449 >gi|225856671|ref|YP_002738182.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae P1031] gi|225725175|gb|ACO21027.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae P1031] Length = 457 Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 149/460 (32%), Positives = 258/460 (56%), Gaps = 24/460 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55 + E +TI A+ST AI I+RLSG F + + I K K + AS +G Sbjct: 2 ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKD-LNKVASHTLNYGHIIDP 60 Query: 56 LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 L G+++D+ ++ SP++FT ED E + HGGIAV N IL+ LA RLA PGEF++ Sbjct: 61 LTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 119 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG++DL +AE++ D+I ++T+ ++++ + G LS L ++ + + +E + Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 179 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +D+ E +DV+ ++ V + + +++ + + G+I+R G I+G N GKSSL Sbjct: 180 IDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPNVGKSSL 239 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N L ++D AIVTDI GTTRDV+ +++ G +K+ DTAGIRETDDIVE+ G++R+ Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGVERSKKA 299 Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------I 343 ++ ADL+LL+ + ++ + ++ + I + K+DL T E L I Sbjct: 300 LKEADLVLLVLNASEPLTAQDRQLLEISQDTNRIILLNKTDLPETI--ETSKLPEDVIRI 357 Query: 344 SSFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDC 400 S + ++++ +I ++ + + + S+ RH+ + + V L+ + E Sbjct: 358 SVLKNQNIDKIEERINNLFFENAGLVEQDATYLSNARHISLIEKAVESLQAVNQGLELGM 417 Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+ITG ++L+ +FS+FC+GK Sbjct: 418 PVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457 >gi|309356576|emb|CAP36954.2| hypothetical protein CBG_19762 [Caenorhabditis briggsae AF16] Length = 448 Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 152/461 (32%), Positives = 253/461 (54%), Gaps = 42/461 (9%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66 TIFA+S+G LPSAI++ R+SGP + + ++K P+ + RI+D+ + Sbjct: 3 TIFALSSGTLPSAIAVFRVSGPQSLPILRQLSRRKVWTPKMMEFTKLYDSQRRIIDESMA 62 Query: 67 IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126 + FP P++FTGED+AEF +HG AV L+++ N+R A GEF+RRAF NGK+ + Sbjct: 63 VYFPGPKTFTGEDTAEFFLHGSQAVAQKFATCLSEIENVREAKRGEFTRRAFHNGKMSIS 122 Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWID-------KLTHIRSFIEADLDFS 179 E L LI S TE +RR + M G ++ +W++ KL I S + +DF Sbjct: 123 EVRGLDRLIRSRTEKERRAAFGQMRGGTRAVEIRWLENFENFSKKLVEILSKLFVIIDFG 182 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 E ++ ++++ + +IL +I+ I + E + G +IV+ G N+GKSS+ N L Sbjct: 183 EHVALELSAAQKDVAEIL---AEINRLILAWEGAERAQRGLEIVLYGRPNSGKSSILNQL 239 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVEN 298 A DVAIV++IPGTTRD L + + G +++DTAGIR T+D++E EGI+R +E+ Sbjct: 240 AHDDVAIVSEIPGTTRDSLVTTIQINGIRCRLTDTAGIRPHTNDVIEAEGIRRAQRRLES 299 Query: 299 ADLILLLKEINSK-----------KEISFPKNIDFIFIGTKSDLYSTYTEEYD---HLIS 344 AD+I + + S+ K++ P++ + + K+DL Y E H++S Sbjct: 300 ADVICFVVDPESRSDDVANILEDVKKLKNPES-KVLIVKNKADLKLPYPEVSSSGIHVVS 358 Query: 345 SF--TGEGLEELINKIKSILSNKFKKLPFSIPSH--KRHLYHLSQTVRYLEMASLNEK-D 399 S + EG ++L + S++ + F + + ++ L+ ++ + A + + + Sbjct: 359 SHATSSEGCQKLRETLGSLVDQLCPETNFLLDAELLRKCSDELTCSMLCQDAAIMCQHIE 418 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 GL+ IAE ++ G +T E +LD IFS+FCIGK Sbjct: 419 KGLEHIAE------LTQGTVT-----ESVLDGIFSQFCIGK 448 >gi|254525316|ref|ZP_05137371.1| tRNA modification GTPase TrmE [Stenotrophomonas sp. SKA14] gi|219722907|gb|EED41432.1| tRNA modification GTPase TrmE [Stenotrophomonas sp. SKA14] Length = 449 Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 145/450 (32%), Positives = 239/450 (53%), Gaps = 23/450 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF--PRKASLRYFFGLDGRILDK 63 +TI A+++ + ++RLSGP + P PR A D ++D Sbjct: 8 DTIVAIASAPGAGGVGLLRLSGP---RAAAIANALGAPALRPRHAHYARLRDADDEVIDD 64 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 G+++ FP+P SFTGE+ E HG ++ ++ + R A PGEFS RAF NGK+ Sbjct: 65 GIVLWFPAPNSFTGEEVVELQGHGSPVLLQQLVARCIAL-GARQARPGEFSERAFLNGKL 123 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL +AE++ADLI++ R + + G S +++L +R +EA +DF++E Sbjct: 124 DLAQAEAIADLIAAGDNRAARAARRSLDGVFSRRIEAVLEQLVLLRIHVEAAIDFADEP- 182 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 + +V + ++D++ + G +R+G V++G NAGKSSL NALA + Sbjct: 183 LDTLGGAQVRRGLEQTRSDLALLRRDAERGRRLRDGLHAVLIGPPNAGKSSLLNALAGSE 242 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303 AIVTDI GTTRD L + L+G + + DTAG+R+ D +E+EG++R +E+E DL L Sbjct: 243 RAIVTDIAGTTRDTLRETIRLDGLELTLVDTAGLRDGGDAIEREGMRRAHVEIERTDLAL 302 Query: 304 LLKEINSKKE---------ISFPKNIDFIFIGTKSDLYSTYT--EEYDHL-ISSFTGEGL 351 ++ + ++ P ++I KSDL + ++ D + +S+ TG GL Sbjct: 303 IVLDARDPAAGEAALGDAVMAVPHK---VYIHNKSDLLTALPTLDDPDRVFVSAATGAGL 359 Query: 352 EELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLR 410 ++L +++SI S +++ + RH+ + + + + A L++ AE LR Sbjct: 360 DDLHARLRSIASAGAGEQVDGEFSARTRHVDAIERAQEHAQRADGELAHEHLELAAEELR 419 Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LA +LG+ITG + + LL IFS FCIGK Sbjct: 420 LAHDALGEITGQMSADDLLGRIFSSFCIGK 449 >gi|26554267|ref|NP_758201.1| tRNA modification GTPase TrmE [Mycoplasma penetrans HF-2] gi|81747503|sp|Q8EUV6|MNME_MYCPE RecName: Full=tRNA modification GTPase mnmE gi|26454276|dbj|BAC44605.1| thiophene and furan oxidation protein-related GTPase [Mycoplasma penetrans HF-2] Length = 444 Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 149/447 (33%), Positives = 253/447 (56%), Gaps = 17/447 (3%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A++T + SAISIIR+SGP+ +++ I KK+ ++ F + I+D+ + Sbjct: 3 DTITAIATPNINSAISIIRISGPNTYEIVSKITKKEITKTGYTFVKEFIYQNDLIIDEVI 62 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 ++ + +P+SFTGED E + HGG+ + N IL+ L RLA GEF++RAF N K+ L Sbjct: 63 ILKYVAPKSFTGEDLIEINCHGGVLITNKILD-LILESGARLAENGEFTKRAFLNNKLTL 121 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +A S+ +LI S+T++ LS G+ + + +K+ ++ IE ++D+ E EDV+ Sbjct: 122 RQANSINNLIFSKTDIATNLSSNGIINSNNDFFLDIKEKIFYLIGKIEVNIDYPEYEDVE 181 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 ++KE ++ + + ++ I+ + NG +VI+G N GKSSL N+L KK+ A Sbjct: 182 QVTAKEFNLEVKEIIDKLNKTINDFNKVSYLYNGLNVVIVGKPNVGKSSLLNSLIKKNKA 241 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IV+DI GTTRD++T ++LEG L+ DTAGIRE+ + +E GIK+T ++ ADLIL L Sbjct: 242 IVSDIKGTTRDLVTESINLEGLLLNFIDTAGIRESKNKIENIGIKKTMASIKEADLILFL 301 Query: 306 ------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIK 359 + K+ ++ KN ++I + KSDL E + S + ++ L+N+IK Sbjct: 302 IDDSKKIDKKEKEILNLIKNKNYIIVKNKSDLKVNANSELKGISISALKKDVKPLVNEIK 361 Query: 360 SILSNKFKKLPFSIPSH-----KRHLYHLSQTVRYLEMASLNE-KDCGLDIIAENLRLAS 413 + K+ F+I ++ L + Q + L+ + N LD++ E+L++A Sbjct: 362 T----NLKQGDFNIANNLAICSDNELKIIKQVLLVLKKSYANSLSGFPLDLLVEDLKVAY 417 Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440 + I G + ++D +F FC+GK Sbjct: 418 EKICTIMGLSEDLNIIDKMFKNFCLGK 444 >gi|303255573|ref|ZP_07341624.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae BS455] gi|303260461|ref|ZP_07346429.1| tRNA modification GTPase [Streptococcus pneumoniae SP-BS293] gi|303262818|ref|ZP_07348755.1| tRNA modification GTPase [Streptococcus pneumoniae SP14-BS292] gi|303265288|ref|ZP_07351198.1| tRNA modification GTPase [Streptococcus pneumoniae BS397] gi|303266495|ref|ZP_07352382.1| tRNA modification GTPase [Streptococcus pneumoniae BS457] gi|303268386|ref|ZP_07354182.1| tRNA modification GTPase [Streptococcus pneumoniae BS458] gi|301801851|emb|CBW34569.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae INV200] gi|302597429|gb|EFL64524.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae BS455] gi|302636016|gb|EFL66514.1| tRNA modification GTPase [Streptococcus pneumoniae SP14-BS292] gi|302638373|gb|EFL68840.1| tRNA modification GTPase [Streptococcus pneumoniae SP-BS293] gi|302642107|gb|EFL72458.1| tRNA modification GTPase [Streptococcus pneumoniae BS458] gi|302643946|gb|EFL74206.1| tRNA modification GTPase [Streptococcus pneumoniae BS457] gi|302645153|gb|EFL75390.1| tRNA modification GTPase [Streptococcus pneumoniae BS397] Length = 457 Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 149/460 (32%), Positives = 258/460 (56%), Gaps = 24/460 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55 + E +TI A+ST AI I+RLSG F + + I K K + AS +G Sbjct: 2 ITREFDTIAAISTPLGEGAIGIVRLSGTESFAIAQKIFKGKD-LSQVASHTLNYGHIVDP 60 Query: 56 LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 L G+++D+ ++ SP++FT ED E + HGGIAV N IL+ LA RLA PGEF++ Sbjct: 61 LTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 119 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG++DL +AE++ D+I ++T+ ++++ + G LS L ++ + + +E + Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 179 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +D+ E +DV+ ++ V + + +++ + + G+I+R G I+G N GKSSL Sbjct: 180 IDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPNVGKSSL 239 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N L ++D AIVTDI GTTRDV+ +++ G +K+ DTAGIRETDDIVE+ G++R+ Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGVERSKKA 299 Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------I 343 ++ ADL+LL+ + ++ + ++ + I + K+DL T E L I Sbjct: 300 LKEADLVLLVLNASEPLTAQDRQLLEISQDTNRIILLNKTDLPETI--ETSKLPEDVIRI 357 Query: 344 SSFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDC 400 S + ++++ +I ++ + + + S+ RH+ + + V L+ + E Sbjct: 358 SVLKNQNIDKIEERINNLFFENAGLVEQDATYLSNARHISLIEKAVESLQAVNQGLELGM 417 Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+ITG ++L+ +FS+FC+GK Sbjct: 418 PVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457 >gi|116516848|ref|YP_816380.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae D39] gi|161410748|ref|NP_358514.2| tRNA modification GTPase TrmE [Streptococcus pneumoniae R6] gi|168491911|ref|ZP_02716054.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae CDC0288-04] gi|32171825|sp|Q8DPZ8|MNME_STRR6 RecName: Full=tRNA modification GTPase mnmE gi|122278734|sp|Q04KR8|MNME_STRP2 RecName: Full=tRNA modification GTPase mnmE gi|116077424|gb|ABJ55144.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae D39] gi|183573804|gb|EDT94332.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae CDC0288-04] Length = 457 Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 149/460 (32%), Positives = 257/460 (55%), Gaps = 24/460 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55 + E +TI A+ST AI I+RLSG F + + I K K + AS +G Sbjct: 2 ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKD-LNKVASHTLNYGHIIDP 60 Query: 56 LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 L G+++D+ ++ SP++FT ED E + HGGIAV N IL+ LA RLA PGEF++ Sbjct: 61 LTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 119 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG++DL +AE++ D+I ++T+ ++++ + G LS L ++ + + +E + Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 179 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +D+ E +DV+ ++ V + + ++ + + G+I+R G I+G N GKSSL Sbjct: 180 IDYPEYDDVEEATTAVVREKTMEFEQLLTKLLRTARRGKILREGISTAIIGRPNVGKSSL 239 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N L ++D AIVTDI GTTRDV+ +++ G +K+ DTAGIRETDDIVE+ G++R+ Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGVERSKKA 299 Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------I 343 ++ ADL+LL+ + ++ + ++ + I + K+DL T E L I Sbjct: 300 LKEADLVLLVLNASEPLTAQDRQLLEISQDTNRIILLNKTDLPETI--ETSKLPEDVIRI 357 Query: 344 SSFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDC 400 S + ++++ +I ++ + + + S+ RH+ + + V L+ + E Sbjct: 358 SVLKNQNIDKIEERINNLFFENAGLVEQDATYLSNARHISLIEKAVESLQAVNQGLELGM 417 Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+ITG ++L+ +FS+FC+GK Sbjct: 418 PVDLLQVDLTRTWEILGEITGDATPDELITQLFSQFCLGK 457 >gi|146319108|ref|YP_001198820.1| tRNA modification GTPase TrmE [Streptococcus suis 05ZYH33] gi|146321314|ref|YP_001201025.1| tRNA modification GTPase TrmE [Streptococcus suis 98HAH33] gi|253752156|ref|YP_003025297.1| tRNA modification GTPase TrmE [Streptococcus suis SC84] gi|166234827|sp|A4W2N6|MNME_STRS2 RecName: Full=tRNA modification GTPase mnmE gi|166234829|sp|A4VWD1|MNME_STRSY RecName: Full=tRNA modification GTPase mnmE gi|145689914|gb|ABP90420.1| Predicted GTPase [Streptococcus suis 05ZYH33] gi|145692120|gb|ABP92625.1| Predicted GTPase [Streptococcus suis 98HAH33] gi|251816445|emb|CAZ52081.1| tRNA modification GTPase TrmE [Streptococcus suis SC84] Length = 457 Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 153/460 (33%), Positives = 253/460 (55%), Gaps = 24/460 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLD- 57 + E +TI A+ST AI I+RLSG F + + K K P SL Y +D Sbjct: 2 ITKEFDTIAAISTPLGEGAIGIVRLSGTDAFAIASTVFKGKDLATVPSH-SLNYGHAIDP 60 Query: 58 --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 G++LD+ ++ SP++FT ED E + HGGIAV N IL+ L + R+A PGEF++ Sbjct: 61 ATGQVLDEVMIGAMRSPKTFTREDVIEINTHGGIAVTNEILQLLIRQ-GARMAEPGEFTK 119 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG++DL +AE++ D+I ++T+ ++ + G LS L ++ + + +E + Sbjct: 120 RAFLNGRVDLTQAEAVMDVIRAKTDKAMHNAVRQLDGSLSQLINDTRQEILNTLAQVEVN 179 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +D+ E +DV+ +++ V L + + + + + G+I+R G I+G N GKSSL Sbjct: 180 IDYPEYDDVEEATTELVREKTLQFQALLENLLRTARRGKILREGIATAIIGRPNVGKSSL 239 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N L +++ AIVTDI GTTRDV+ ++++G +K+ DTAGIRETDDIVEK G++R+ Sbjct: 240 LNNLLREEKAIVTDIAGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDIVEKIGVERSKKA 299 Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------I 343 +E ADLILL+ + + ++ + I + K+DL E D L I Sbjct: 300 LEEADLILLVLNASEPLTEQDRNLLAISDMANRIVLLNKTDLEEQI--EVDQLPEDVIRI 357 Query: 344 SSFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DC 400 S + ++++ KI + + + + S+ RH+ + Q V+ L + K Sbjct: 358 SVLQNQNIDQIEEKINQLFFENAGLVEQDATYLSNSRHISLIEQAVQSLHAVNDGLKVGM 417 Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+ITG ++L+ +FS+FC+GK Sbjct: 418 PVDLLQVDLTRCWQILGEITGDAAPDELITQLFSQFCLGK 457 >gi|297531687|ref|YP_003672962.1| tRNA modification GTPase TrmE [Geobacillus sp. C56-T3] gi|297254939|gb|ADI28385.1| tRNA modification GTPase TrmE [Geobacillus sp. C56-T3] Length = 462 Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 156/463 (33%), Positives = 259/463 (55%), Gaps = 29/463 (6%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFI-----CKKKKPFPRKASLRYFFGLD- 57 E +TI A+ST AI+I+RLSG ++ + + K+ K P ++ Y +D Sbjct: 3 EFDTIAAISTPMGEGAIAIVRLSGDQAVEIADRLFRSPSGKRLKDVP-SHTIHYGHIIDP 61 Query: 58 --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 GR++++ ++ V +P++FT ED E + HGG VN +L+ L RLA PGEF++ Sbjct: 62 KSGRVVEEVMVSVMRAPKTFTREDVVEINCHGGFVSVNRVLQ-LVLANGARLAEPGEFTK 120 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG+IDL +AE++ DLI ++T+ ++++ M G LS L + + + +E + Sbjct: 121 RAFLNGRIDLSQAEAVIDLIRAKTDRAMNVALQQMEGRLSKLIRELRQTILETLAHVEVN 180 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +D+ E +DV+ + + + +++ I +S G+I+R G VI+G N GKSSL Sbjct: 181 IDYPEYDDVEEMTPRLLREKAEYVRGQIEKLLSTAAQGKILREGLATVIIGRPNVGKSSL 240 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 NALA ++ AIVTDIPGTTRDV+ +++ G +++ DTAGIRET+D+VE+ G++R+ Sbjct: 241 LNALAHENRAIVTDIPGTTRDVIEEYVNVRGVPLRLIDTAGIRETEDVVERIGVERSQQM 300 Query: 296 VENADLILLL----KEINSKKEISFP--KNIDFIFIGTKSDLYSTYTEEYDHLISS---- 345 ++ ADLILL+ + + + E F + +D I I K+DL E +++ Sbjct: 301 LKRADLILLVLNYHEPLTEEDERLFAMIEGMDAIVIVNKTDLPRRIDMERVKELAAGRPV 360 Query: 346 -----FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399 +G++EL I + + + + S+ RH+ L Q +E A L D Sbjct: 361 VATSLLHEQGIDELEKAIADLFFGGELEAGDLTYVSNSRHIALLEQAKTAIEDA-LAGID 419 Query: 400 CGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G+ D++ +LR A LG+I G E L+D +F++FC+GK Sbjct: 420 AGMPVDLVQIDLRRAWELLGEIIGDTVHESLIDQLFAQFCLGK 462 >gi|223043424|ref|ZP_03613470.1| tRNA modification GTPase TrmE [Staphylococcus capitis SK14] gi|314934963|ref|ZP_07842322.1| tRNA modification GTPase TrmE [Staphylococcus caprae C87] gi|222443213|gb|EEE49312.1| tRNA modification GTPase TrmE [Staphylococcus capitis SK14] gi|313652893|gb|EFS16656.1| tRNA modification GTPase TrmE [Staphylococcus caprae C87] Length = 459 Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 150/459 (32%), Positives = 255/459 (55%), Gaps = 27/459 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPR--KASLRYFFGLD---GRI 60 +TI ++ST AI I+RLSGP ++ + + K KK ++ Y +D Sbjct: 4 DTITSISTPMGEGAIGIVRLSGPQAIEIGDTLYKGKKKLSEVDTHTINYGHIIDPETNET 63 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +++ ++ V +P++FT ED E + HGGI +N ILE L R+A PGE+++RAF N Sbjct: 64 VEEVMISVLRAPKTFTREDIIEINCHGGILTINRILE-LTMTYGARMAEPGEYTKRAFLN 122 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G+IDL +AE++ D I S+T+ +++M + G LS L + + I + +E ++D+ E Sbjct: 123 GRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEILAQVEVNIDYPE 182 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 +DV++ +++ +L +K +I+ + G G+I+R G VI+G N GKSS+ N L Sbjct: 183 YDDVEDATTEFLLEQSKNIKEEINRLLETGTQGKIMREGLSTVIVGRPNVGKSSMLNNLI 242 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 + + AIVT++ GTTRDVL +++ G +++ DTAGIR+T+DIVEK G++R+ + AD Sbjct: 243 QDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDIVEKIGVERSRKALSEAD 302 Query: 301 LILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTY-TEEYDHLI-------- 343 LIL + +N+ + ++ KN D I I K+DL +E +I Sbjct: 303 LILFV--LNNNEPLTEDDQTLYEVVKNEDVIVIINKTDLEPRLDIDEVKEMIGDMPLIQT 360 Query: 344 SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCG 401 S EG++EL +I+ + + + + S+ RH+ L Q ++ A E Sbjct: 361 SMLKQEGIDELEIQIRDLFFGGEVQNQDMTYVSNSRHISLLKQARHSIQDAIDAAESGVP 420 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+I G ++L+D +FS+FC+GK Sbjct: 421 MDMVQIDLTRTWEILGEIIGESASDELIDQLFSQFCLGK 459 >gi|15458528|gb|AAK99724.1| Thiophene and furan oxidation protein [Streptococcus pneumoniae R6] Length = 479 Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 149/460 (32%), Positives = 257/460 (55%), Gaps = 24/460 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55 + E +TI A+ST AI I+RLSG F + + I K K + AS +G Sbjct: 24 ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKD-LNKVASHTLNYGHIIDP 82 Query: 56 LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 L G+++D+ ++ SP++FT ED E + HGGIAV N IL+ LA RLA PGEF++ Sbjct: 83 LTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 141 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG++DL +AE++ D+I ++T+ ++++ + G LS L ++ + + +E + Sbjct: 142 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 201 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +D+ E +DV+ ++ V + + ++ + + G+I+R G I+G N GKSSL Sbjct: 202 IDYPEYDDVEEATTAVVREKTMEFEQLLTKLLRTARRGKILREGISTAIIGRPNVGKSSL 261 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N L ++D AIVTDI GTTRDV+ +++ G +K+ DTAGIRETDDIVE+ G++R+ Sbjct: 262 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGVERSKKA 321 Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------I 343 ++ ADL+LL+ + ++ + ++ + I + K+DL T E L I Sbjct: 322 LKEADLVLLVLNASEPLTAQDRQLLEISQDTNRIILLNKTDLPETI--ETSKLPEDVIRI 379 Query: 344 SSFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDC 400 S + ++++ +I ++ + + + S+ RH+ + + V L+ + E Sbjct: 380 SVLKNQNIDKIEERINNLFFENAGLVEQDATYLSNARHISLIEKAVESLQAVNQGLELGM 439 Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+ITG ++L+ +FS+FC+GK Sbjct: 440 PVDLLQVDLTRTWEILGEITGDATPDELITQLFSQFCLGK 479 >gi|253753982|ref|YP_003027123.1| tRNA modification GTPase TrmE [Streptococcus suis P1/7] gi|251820228|emb|CAR46651.1| tRNA modification GTPase TrmE [Streptococcus suis P1/7] gi|292558744|gb|ADE31745.1| tRNA modification GTPase TrmE [Streptococcus suis GZ1] gi|319758543|gb|ADV70485.1| tRNA modification GTPase TrmE [Streptococcus suis JS14] Length = 457 Score = 224 bits (570), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 153/460 (33%), Positives = 253/460 (55%), Gaps = 24/460 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLD- 57 + E +TI A+ST AI I+RLSG F + + K K P SL Y +D Sbjct: 2 ITKEFDTITAISTPLGEGAIGIVRLSGTDAFAIASTVFKGKDLATVPSH-SLNYGHAIDP 60 Query: 58 --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 G++LD+ ++ SP++FT ED E + HGGIAV N IL+ L + R+A PGEF++ Sbjct: 61 ATGQVLDEVMIGAMRSPKTFTREDVIEINTHGGIAVTNEILQLLIRQ-GARMAEPGEFTK 119 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG++DL +AE++ D+I ++T+ ++ + G LS L ++ + + +E + Sbjct: 120 RAFLNGRVDLTQAEAVMDVIRAKTDKAMHNAVRQLDGSLSQLINDTRQEILNTLAQVEVN 179 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +D+ E +DV+ +++ V L + + + + + G+I+R G I+G N GKSSL Sbjct: 180 IDYPEYDDVEEATTELVREKTLQFQALLENLLRTARRGKILREGIATAIIGRPNVGKSSL 239 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N L +++ AIVTDI GTTRDV+ ++++G +K+ DTAGIRETDDIVEK G++R+ Sbjct: 240 LNNLLREEKAIVTDIAGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDIVEKIGVERSKKA 299 Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------I 343 +E ADLILL+ + + ++ + I + K+DL E D L I Sbjct: 300 LEEADLILLVLNASEPLTEQDRNLLAISDMANRIVLLNKTDLEEQI--EVDQLPEDVIRI 357 Query: 344 SSFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DC 400 S + ++++ KI + + + + S+ RH+ + Q V+ L + K Sbjct: 358 SVLQNQNIDQIEEKINQLFFENAGLVEQDATYLSNSRHISLIEQAVQSLHAVNDGLKVGM 417 Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+ITG ++L+ +FS+FC+GK Sbjct: 418 PVDLLQVDLTRCWQILGEITGDAAPDELITQLFSQFCLGK 457 >gi|149003876|ref|ZP_01828699.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP14-BS69] gi|237650073|ref|ZP_04524325.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae CCRI 1974] gi|237822158|ref|ZP_04598003.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae CCRI 1974M2] gi|147758106|gb|EDK65110.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP14-BS69] gi|301799983|emb|CBW32573.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae OXC141] Length = 457 Score = 224 bits (570), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 149/460 (32%), Positives = 257/460 (55%), Gaps = 24/460 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55 + E +TI A+ST AI I+RLSG F + + I K K + AS +G Sbjct: 2 ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKD-LNKVASHTLNYGHIIDP 60 Query: 56 LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 L G+++D+ ++ SP++FT ED E + HGGIAV N IL+ LA RLA PGEF++ Sbjct: 61 LTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 119 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG++DL +AE++ D+I ++T+ ++++ + G LS L ++ + + +E + Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 179 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +D+ E +DV+ ++ V + + ++ + + G+I+R G I+G N GKSSL Sbjct: 180 IDYPEYDDVEEATTAVVREKTMEFEQLLTKLLRTARRGKILREGISTAIIGRPNVGKSSL 239 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N L ++D AIVTDI GTTRDV+ +++ G +K+ DTAGIRETDDIVE+ G++R+ Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGVERSKKA 299 Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------I 343 ++ ADL+LL+ + ++ + ++ + I + K+DL T E L I Sbjct: 300 LKEADLVLLVLNASEPLTAQDRQLLEISQDTNRIILLNKTDLPETI--ETSKLPEDVIRI 357 Query: 344 SSFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDC 400 S + ++++ +I ++ + + + S+ RH+ + + V L+ + E Sbjct: 358 SVLKNQNIDKIEERINNLFFENAGLVEQDATYLSNARHISLIEKAVESLQAVNQGLELGM 417 Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+ITG ++L+ +FS+FC+GK Sbjct: 418 PVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457 >gi|297588067|ref|ZP_06946711.1| tRNA modification GTPase TrmE [Finegoldia magna ATCC 53516] gi|297574756|gb|EFH93476.1| tRNA modification GTPase TrmE [Finegoldia magna ATCC 53516] Length = 452 Score = 224 bits (570), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 155/456 (33%), Positives = 260/456 (57%), Gaps = 27/456 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRILD 62 + I A+S+ + I I+R++G C V + + K+ + + +G D I+D Sbjct: 3 DCIAAISSATGEAGIGIVRMTGEGCVDVLDSVFKRANDNADLINRKMTYGHIVDDNEIVD 62 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 + L+ +P ++T ED E + HGG+ V +LE L RLA GEF++RAF NG+ Sbjct: 63 EVLVCYMKAPHTYTREDVVEIYTHGGVVAVRKVLEVLLN-NGARLAEAGEFTKRAFLNGR 121 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 IDL +AE++ D+I ++T+ +SM+ + G ++ Q D+L + S +E ++F+E Sbjct: 122 IDLSQAEAIIDMIKAKTDKAYSVSMKQLEGSVNRNIKQLRDQLLDMLSHVEYSINFTE-- 179 Query: 183 DVQN-FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 D+Q+ + VLN+ + + + G IIR+G I+G N GKSSL NAL K Sbjct: 180 DMQDELDNTPVLNEGKEVLDKLKKLSESANRGRIIRDGINTTIIGKPNVGKSSLLNALLK 239 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 ++ AIVTDIPGTTRDV+ +DL+G +KI+DTAGIR+T+DIVEK G++++ + ++DL Sbjct: 240 ENRAIVTDIPGTTRDVIEEYIDLDGISLKINDTAGIRDTEDIVEKIGVEKSVSFISDSDL 299 Query: 302 ILLL----KEIN--SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH--------LISSFT 347 I+ + +E + +K + ++ I + K DL + ++D IS Sbjct: 300 IIAIFDSSREFDDEDRKILDLIRDKKSIVLLNKIDLDGGF--DFDENLEGIEVIRISIKQ 357 Query: 348 GEGLEELINKIKSILSNKFKKLPF-SIPSHKRHLYHLSQTVRYLEMASLNEKDCG--LDI 404 EG+E+L NKI + ++ + + +I ++ RH +++ ++ LE +SL++ +CG +D Sbjct: 358 NEGIEDLENKIIEMFNDGYIEANNDNIITNIRHRDIINKAIKSLE-SSLHDMECGVPIDC 416 Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +LR A LG+ITG + +L+ IFS FCIGK Sbjct: 417 FEVDLRNAWEILGEITGETVDDDVLNKIFSDFCIGK 452 >gi|332800542|ref|YP_004462041.1| tRNA modification GTPase mnmE [Tepidanaerobacter sp. Re1] gi|332698277|gb|AEE92734.1| tRNA modification GTPase mnmE [Tepidanaerobacter sp. Re1] Length = 462 Score = 224 bits (570), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 161/464 (34%), Positives = 256/464 (55%), Gaps = 37/464 (7%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK---KKKPFPRKASLRYFFGL---DGR 59 ETI A+ST I I+R+SGP F++ E I K KK F K Y + + Sbjct: 7 ETIAAISTAIGEGGIGIVRISGPRAFEIAEKIFKPRIKKSLFEFKNRTLYLGDIVDSNDE 66 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 I+D+ LL +F +P ++T ED E + HGG+ IL L RLA PGEF++RAF Sbjct: 67 IIDEVLLAIFKAPHTYTREDMVEINCHGGLVAQKRILA-LVLDNGARLAEPGEFTKRAFL 125 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NG+IDL +AE++ D+I ++T+ ++ ++GE S + L ++ + IEA++DF Sbjct: 126 NGRIDLSQAEAVIDIIRAKTDRALAVANRRLTGEFSEKISKIRSNLLNVIAHIEANIDFP 185 Query: 180 EE---EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 E+ E + S+E+ N++L + D+ G+ I+R G +ILG++N GKSSL Sbjct: 186 EDDIPEAEPEYISQEI-NNVLKMVEDLLRSAGSGR---ILREGLSTLILGNTNVGKSSLL 241 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 NAL +++ AIVTDIPGTTRD++ +D++G +KI DTAGIR+T D VEK GI R + Sbjct: 242 NALLQEERAIVTDIPGTTRDIIEEYIDIQGIPIKIIDTAGIRQTTDEVEKIGINRAMKHL 301 Query: 297 ENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTE-EYDHL------- 342 + A+L+LL+ ++ + K+ I + I + K DL E E L Sbjct: 302 QEAELVLLMIDVSRKLTDDDKRLIELVGDKTTITVINKVDLPVAVDEYEIKKLVPEAKIV 361 Query: 343 -ISSFTGEGLEELINKIKSILSNKFKKLPFS----IPSHKRHLYHLSQTVRYLEMA-SLN 396 +S+ EG++EL I ++ +K+ F+ I + +R L ++ +L+ A Sbjct: 362 KVSALKQEGIDELKTVIYDTIT---EKMGFTDEGLIVASERQRRILEESREFLKSALCAM 418 Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + ++++ ++R A LG+ITG E +++ IF KFCIGK Sbjct: 419 AEGVPIEMVEIDIRDAWEKLGEITGDTVSEDIINTIFQKFCIGK 462 >gi|56422029|ref|YP_149347.1| tRNA modification GTPase TrmE [Geobacillus kaustophilus HTA426] gi|261420902|ref|YP_003254584.1| tRNA modification GTPase TrmE [Geobacillus sp. Y412MC61] gi|319768573|ref|YP_004134074.1| tRNA modification GTPase TrmE [Geobacillus sp. Y412MC52] gi|81346199|sp|Q5KU57|MNME_GEOKA RecName: Full=tRNA modification GTPase mnmE gi|56381871|dbj|BAD77779.1| thiophen/furan oxidation protein [Geobacillus kaustophilus HTA426] gi|261377359|gb|ACX80102.1| tRNA modification GTPase TrmE [Geobacillus sp. Y412MC61] gi|317113439|gb|ADU95931.1| tRNA modification GTPase TrmE [Geobacillus sp. Y412MC52] Length = 462 Score = 224 bits (570), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 156/463 (33%), Positives = 259/463 (55%), Gaps = 29/463 (6%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFI-----CKKKKPFPRKASLRYFFGLD- 57 E +TI A+ST AI+I+RLSG ++ + + K+ K P ++ Y +D Sbjct: 3 EFDTIAAISTPMGEGAIAIVRLSGDQAVEIADRLFRSPSGKRLKDVP-SHTIHYGHIIDP 61 Query: 58 --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 GR++++ ++ V +P++FT ED E + HGG VN +L+ L RLA PGEF++ Sbjct: 62 KSGRVVEEVMVSVMRAPKTFTREDVVEINCHGGFVSVNRVLQ-LVLANGARLAEPGEFTK 120 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG+IDL +AE++ DLI ++T+ ++++ M G LS L + + + +E + Sbjct: 121 RAFLNGRIDLSQAEAVIDLIRAKTDRAMNVALQQMEGRLSKLIRELRQTILETLAHVEVN 180 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +D+ E +DV+ + + + +++ I +S G+I+R G VI+G N GKSSL Sbjct: 181 IDYPEYDDVEEMTPRLLREKAEYVRGQIEKLLSTAAQGKILREGLATVIIGRPNVGKSSL 240 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 NALA ++ AIVTDIPGTTRDV+ +++ G +++ DTAGIRET+D+VE+ G++R+ Sbjct: 241 LNALAHENRAIVTDIPGTTRDVIEEYVNVRGVPLRLIDTAGIRETEDVVERIGVERSQQM 300 Query: 296 VENADLILLL----KEINSKKEISFP--KNIDFIFIGTKSDLYSTYTEEYDHLISS---- 345 ++ ADLILL+ + + + E F + +D I I K+DL E +++ Sbjct: 301 LKRADLILLVLNYHEPLTEEDERLFAMIEGMDAIVIVNKTDLPRRIDMERVKELAAGRPV 360 Query: 346 -----FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399 +G++EL I + + + + S+ RH+ L Q +E A L D Sbjct: 361 VGTSLLHEQGIDELEKAIADLFFGGELEAGDLTYVSNSRHIALLEQAKTAIEDA-LAGID 419 Query: 400 CGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G+ D++ +LR A LG+I G E L+D +F++FC+GK Sbjct: 420 AGMPVDLVQIDLRRAWELLGEIIGDTVHESLIDQLFAQFCLGK 462 >gi|168487704|ref|ZP_02712212.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae CDC1087-00] gi|169834150|ref|YP_001694460.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae Hungary19A-6] gi|225861000|ref|YP_002742509.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae Taiwan19F-14] gi|298230463|ref|ZP_06964144.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255333|ref|ZP_06978919.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502963|ref|YP_003724903.1| tRNA modification GTP-binding protein TrmE [Streptococcus pneumoniae TCH8431/19A] gi|205415808|sp|B1IBH5|MNME_STRPI RecName: Full=tRNA modification GTPase mnmE gi|168996652|gb|ACA37264.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae Hungary19A-6] gi|183569534|gb|EDT90062.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae CDC1087-00] gi|225727603|gb|ACO23454.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae Taiwan19F-14] gi|298238558|gb|ADI69689.1| tRNA modification GTP-binding protein TrmE [Streptococcus pneumoniae TCH8431/19A] gi|327389399|gb|EGE87744.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA04375] gi|332200613|gb|EGJ14685.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA41317] gi|332201488|gb|EGJ15558.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47368] Length = 457 Score = 224 bits (570), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 149/460 (32%), Positives = 257/460 (55%), Gaps = 24/460 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55 + E +TI A+ST AI I+RLSG F + + I K K + AS +G Sbjct: 2 ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKD-LNKVASHTLNYGHIIDP 60 Query: 56 LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 L G+++D+ ++ SP++FT ED E + HGGIAV N IL+ LA RLA PGEF++ Sbjct: 61 LTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 119 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG++DL +AE++ D+I ++T+ ++++ + G LS L ++ + + +E + Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNIRQEILNTLAQVEVN 179 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +D+ E +DV+ ++ V + + ++ + + G+I+R G I+G N GKSSL Sbjct: 180 IDYPEYDDVEEATTAVVREKTMEFEQLLTKLLRTARRGKILREGISTAIIGRPNVGKSSL 239 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N L ++D AIVTDI GTTRDV+ +++ G +K+ DTAGIRETDDIVE+ G++R+ Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGVERSKKA 299 Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------I 343 ++ ADL+LL+ + ++ + ++ + I + K+DL T E L I Sbjct: 300 LKEADLVLLVLNASEPLTAQDRQLLEISQDTNRIILLNKTDLPETI--ETSKLPEDVIRI 357 Query: 344 SSFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDC 400 S + ++++ +I ++ + + + S+ RH+ + + V L+ + E Sbjct: 358 SVLKNQNIDKIEERINNLFFENAGLVEQDATYLSNARHISLIEKAVESLQAVNQGLELGM 417 Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+ITG ++L+ +FS+FC+GK Sbjct: 418 PVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457 >gi|15900887|ref|NP_345491.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae TIGR4] gi|111658245|ref|ZP_01408937.1| hypothetical protein SpneT_02000559 [Streptococcus pneumoniae TIGR4] gi|21363022|sp|Q97R24|MNME_STRPN RecName: Full=tRNA modification GTPase mnmE gi|14972489|gb|AAK75131.1| thiophene and furan oxidation protein ThdF [Streptococcus pneumoniae TIGR4] Length = 457 Score = 224 bits (570), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 149/458 (32%), Positives = 256/458 (55%), Gaps = 20/458 (4%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55 + E +TI A+ST AI I+RLSG F + + I K K + AS +G Sbjct: 2 ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKD-LNKVASHTLNYGHIIDP 60 Query: 56 LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 L G+++D+ ++ SP++FT ED E + HGGIAV N IL+ LA RLA PGEF++ Sbjct: 61 LTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 119 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG++DL +AE++ D+I ++T+ ++++ + G LS L ++ + + +E + Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 179 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +D+ E +DV+ ++ V + + ++ + + G+I+R G I+G N GKSSL Sbjct: 180 IDYPEYDDVEEATTAVVREKTMEFEQLLTKLLRTARRGKILREGISTAIIGRPNVGKSSL 239 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N L ++D AIVTDI GTTRDV+ +++ G +K+ DTAGIRETDDIVE+ G++R+ Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGVERSKKA 299 Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTY-TEEYDH---LISS 345 ++ ADL+LL+ + ++ + + + I + K+DL T T E IS Sbjct: 300 LKEADLVLLVLNASEPLTAQDRQLLEISQETNRIILLNKTDLPETIETSELPEDVIRISV 359 Query: 346 FTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGL 402 + ++++ +I ++ + + + S+ RH+ + + V L+ + E + Sbjct: 360 LKNQNIDKIEERINNLFFENAGLVEQDATYLSNARHISLIEKAVESLQAVNQGLELGMPV 419 Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D++ +L LG+ITG ++L+ +FS+FC+GK Sbjct: 420 DLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457 >gi|159029809|emb|CAO90863.1| trmE [Microcystis aeruginosa PCC 7806] Length = 457 Score = 224 bits (570), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 156/463 (33%), Positives = 250/463 (53%), Gaps = 29/463 (6%) Query: 1 MNHEKETIFAVSTGALP--SAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL 56 M + +TI A++T +P +I I+RLSG + F + ++ + S R +G Sbjct: 1 MLNTGDTIAAIATAIVPEQGSIGIVRLSGSEAVAIARRLFHTRNRQKWQ---SHRLLYGY 57 Query: 57 -----DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPG 111 I+D+ LL++ +P SFT ED EFH HGGI V +L+ L RLA G Sbjct: 58 IRHPQSQAIIDEALLLLMLAPRSFTREDVVEFHCHGGIMPVQQVLQ-LCLENGARLAQAG 116 Query: 112 EFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSF 171 EFS RAF NG+IDL +AES+ DL+ + + + ++ G+ G+L+ I + Sbjct: 117 EFSLRAFLNGRIDLTQAESVVDLVGARSPQAAQFALAGLQGKLAQPIRHLRATCLDILAE 176 Query: 172 IEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAG 231 IEA +DF EED+ + VL+ I + ++ ++ + GE++R+G K+ I+G N G Sbjct: 177 IEARIDF--EEDLPLLDHEAVLSSIEQVFCQVNLILATAERGELLRSGLKVAIVGRPNVG 234 Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR 291 KSSL NA ++ D AIVTD+PGTTRD++ L + G V++ DTAGIR D VE+ G++R Sbjct: 235 KSSLLNAWSRSDRAIVTDLPGTTRDIVESQLVVAGIPVQVLDTAGIRSASDRVEQIGVER 294 Query: 292 TFLEVENADLILLLKEINS---KKEISFPKNID---FIFIGTKSDLYST----YTEEYDH 341 + ++ADL+LL S +++ +++ I + K DL + Y E + Sbjct: 295 SRQTAQSADLVLLTVSAESGWTEEDEEIYRSVSDRRLILVINKIDLVNPETVIYPAEIER 354 Query: 342 L--ISSFTGEGLEELINKIKSILSNK-FKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-E 397 + IS+ +G+E+L I + + N+ + + ++R L++ LE + Sbjct: 355 VVKISAVQNQGIEDLEKTIINAVQNQELQAANLDLAINQRQAAALTRAKIALEQVKKTID 414 Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D D + +LR A +LG+ITG E +LD IFS+FCIGK Sbjct: 415 QDLPFDFWSIDLRTAIQALGEITGEEVTESVLDRIFSRFCIGK 457 >gi|218263821|ref|ZP_03477797.1| hypothetical protein PRABACTJOHN_03487 [Parabacteroides johnsonii DSM 18315] gi|218222494|gb|EEC95144.1| hypothetical protein PRABACTJOHN_03487 [Parabacteroides johnsonii DSM 18315] Length = 460 Score = 224 bits (570), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 158/463 (34%), Positives = 246/463 (53%), Gaps = 31/463 (6%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFI----CKKKKPFPRKA-SLRY-FFGLDG 58 ++TI AVST I++IR+SGP +C I K ++A +LRY + Sbjct: 2 EDTICAVSTAPGAGGIAVIRISGPEAIAICNTIFVPRITGKDLLSQEAYTLRYGSIRRNK 61 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 ++D L+ +F +P SFTGED+ E HG + + I++ L + R A PGE+++RAF Sbjct: 62 ELIDDVLVALFRAPHSFTGEDTVEITCHGSVYIQQQIMQLLIE-SGCRSALPGEYTQRAF 120 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NGK+DL +AE++ADLI+S + Q RL++ M G S ++L HI S +E +LDF Sbjct: 121 MNGKMDLSQAEAVADLIASTSAGQHRLALNQMRGGFSHELKNLREQLLHITSLMELELDF 180 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 S+ E+++ E+ ++ IS + +G I+NG + I+G +NAGKS+L N Sbjct: 181 SDHEELEFADRSELSTLATHIETVISRLANSFSVGNAIKNGVPVAIIGETNAGKSTLLNV 240 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L +D AIV+DI GTTRD++ + L G + DTAGIRET D +E GI+RTF +++ Sbjct: 241 LLNEDKAIVSDIHGTTRDIIEDTVSLGGITFRFIDTAGIRETHDAIESIGIERTFQKLDQ 300 Query: 299 ADLILLLKEIN---------SKKEISFPKNIDFIFIGTKSDLYS----TYTEEYDHLISS 345 AD++L + + S+K + K I + K+DL + T+ D++ S Sbjct: 301 ADIVLWMIDAADASLQIAQLSEKILPRSKGKQLILVFNKADLLTDRQFKTTDLPDNVQSI 360 Query: 346 FTGEGLEELINKIKSILSNKFKKLPFS----IPSHKRHLYHLSQTV----RYLEMASLNE 397 F E I++++ +L S I ++ RH L+ + R E S N Sbjct: 361 FISAKKREHIDELQDLLIQAAHIPSLSSNDVIVTNIRHYEALTHALDSIHRVQEGLSANL 420 Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D I+++LR L I G V +Q+L IF +FCIGK Sbjct: 421 SG---DFISQDLRECIFHLSDIVGEVTTDQVLGNIFERFCIGK 460 >gi|148984971|ref|ZP_01818214.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP3-BS71] gi|182683965|ref|YP_001835712.1| tRNA modification GTPase [Streptococcus pneumoniae CGSP14] gi|147922669|gb|EDK73786.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP3-BS71] gi|182629299|gb|ACB90247.1| tRNA modification GTPase [Streptococcus pneumoniae CGSP14] Length = 479 Score = 224 bits (570), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 149/460 (32%), Positives = 257/460 (55%), Gaps = 24/460 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55 + E +TI A+ST AI I+RLSG F + + I K K + AS +G Sbjct: 24 ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKD-LNKVASHTLNYGHIIDP 82 Query: 56 LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 L G+++D+ ++ SP++FT ED E + HGGIAV N IL+ LA RLA PGEF++ Sbjct: 83 LTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 141 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG++DL +AE++ D+I ++T+ ++++ + G LS L ++ + + +E + Sbjct: 142 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 201 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +D+ E +DV+ ++ V + + ++ + + G+I+R G I+G N GKSSL Sbjct: 202 IDYPEYDDVEEATTAVVREKTMEFEQLLTKLLRTARRGKILREGISTAIIGRPNVGKSSL 261 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N L ++D AIVTDI GTTRDV+ +++ G +K+ DTAGIRETDDIVE+ G++R+ Sbjct: 262 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGVERSKKA 321 Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------I 343 ++ ADL+LL+ + ++ + ++ + I + K+DL T E L I Sbjct: 322 LKEADLVLLVLNASEPLTAQDRQLLEISQDTNRIILLNKTDLPETI--ETSKLPEDVIRI 379 Query: 344 SSFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDC 400 S + ++++ +I ++ + + + S+ RH+ + + V L+ + E Sbjct: 380 SVLKNQNIDKIEERINNLFFENAGLVEQDATYLSNARHISLIEKAVESLQAVNQGLELGM 439 Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+ITG ++L+ +FS+FC+GK Sbjct: 440 PVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 479 >gi|148988468|ref|ZP_01819915.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP6-BS73] gi|147926149|gb|EDK77223.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP6-BS73] Length = 457 Score = 224 bits (570), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 149/460 (32%), Positives = 257/460 (55%), Gaps = 24/460 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55 + E +TI A+ST AI I+RLSG F + + I K K + AS +G Sbjct: 2 ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKD-LSQVASHTLNYGHIIDP 60 Query: 56 LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 L G+++D+ ++ SP++FT ED E + HGGIAV N IL+ LA RLA PGEF++ Sbjct: 61 LTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 119 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG++DL +AE++ D+I ++T+ ++++ + G LS L ++ + + +E + Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNIRQEILNTLAQVEVN 179 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +D+ E +DV+ ++ V + + ++ + + G+I+R G I+G N GKSSL Sbjct: 180 IDYPEYDDVEEATTAVVREKTMEFEQLLTKLLRTARRGKILREGISTAIIGRPNVGKSSL 239 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N L ++D AIVTDI GTTRDV+ +++ G +K+ DTAGIRETDDIVE+ G++R+ Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGVERSKKA 299 Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------I 343 ++ ADL+LL+ + ++ + ++ + I + K+DL T E L I Sbjct: 300 LKEADLVLLVLNASEPLTAQDRQLLEISQDTNRIILLNKTDLPETI--ETSKLPEDVIRI 357 Query: 344 SSFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDC 400 S + ++++ +I ++ + + + S+ RH+ + + V L+ + E Sbjct: 358 SVLKNQNIDKIEERINNLFFENAGLIEQDATYLSNARHISLIEKAVESLQAVNQGLELGM 417 Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+ITG ++L+ +FS+FC+GK Sbjct: 418 PVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457 >gi|293365349|ref|ZP_06612066.1| thiophene and furan oxidation protein ThdF [Streptococcus oralis ATCC 35037] gi|307703891|ref|ZP_07640832.1| tRNA modification GTPase TrmE [Streptococcus oralis ATCC 35037] gi|291316799|gb|EFE57235.1| thiophene and furan oxidation protein ThdF [Streptococcus oralis ATCC 35037] gi|307622726|gb|EFO01722.1| tRNA modification GTPase TrmE [Streptococcus oralis ATCC 35037] Length = 457 Score = 224 bits (570), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 152/460 (33%), Positives = 262/460 (56%), Gaps = 24/460 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKAS--LRYFFGLD- 57 + E +TI A+ST AI I+RLSG F + + I K K + AS L Y +D Sbjct: 2 ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKD-LSKVASHTLNYGHIIDP 60 Query: 58 --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 G+++D+ ++ SP++FT ED E + HGGIAV N IL+ LA RLA PGEF++ Sbjct: 61 QTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 119 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG++DL +AE++ D+I ++T+ ++++ + G LS L ++ + + +E + Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 179 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +D+ E +DV+ ++ V + + +++ + + G+I+R G I+G N GKSSL Sbjct: 180 IDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPNVGKSSL 239 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N L ++D AIVTDI GTTRDV+ +++ G +K+ DTAGIRETDDIVE+ G++R+ Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGVERSRKA 299 Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTY-TEEYDH---LISS 345 ++ ADL+LL+ + ++ + ++ + I + K+DL TEE IS Sbjct: 300 LKEADLVLLVLNASEPLTAQDRQLLEISQDTNRIILLNKTDLQEAIETEELPEDIIRISV 359 Query: 346 FTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGL 402 ++++ +I ++ + + + S+ RH+ + + V L+ ++NE + G+ Sbjct: 360 LKNRNIDKIEERINNLFFENAGLVEQDATYLSNARHISLIEKAVESLQ--AVNEGLELGM 417 Query: 403 --DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D++ +L LG+ITG ++L+ +FS+FC+GK Sbjct: 418 PVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457 >gi|70727675|ref|YP_254591.1| tRNA modification GTPase TrmE [Staphylococcus haemolyticus JCSC1435] gi|82582308|sp|Q4L2Z2|MNME_STAHJ RecName: Full=tRNA modification GTPase mnmE gi|68448401|dbj|BAE05985.1| possible thiophene and furan oxidation protein [Staphylococcus haemolyticus JCSC1435] Length = 459 Score = 223 bits (569), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 151/459 (32%), Positives = 254/459 (55%), Gaps = 27/459 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD---GRI 60 +TI ++ST AI I+RLSGP ++ + + K KK S +G +D + Sbjct: 4 DTITSISTPMGEGAIGIVRLSGPQAVEIGDKLYKGKKKLEDVDSHTINYGHIVDPETNEV 63 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +++ ++ V +P +FT ED E + HGGI +N ILE L R+A PGE+++RAF N Sbjct: 64 VEEVMISVLRAPRTFTREDIIEINCHGGILTINRILE-LTMTHGARMAEPGEYTKRAFLN 122 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G+IDL +AE++ D I S+T+ +++M + G LS L + + I + +E ++D+ E Sbjct: 123 GRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKRQRQSILEILAQVEVNIDYPE 182 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 +DV++ +++ +L +KN+I+ + G G+I+R G VI+G N GKSS+ N L Sbjct: 183 YDDVEDATTEFLLEQSKKIKNEINLLLETGAQGKIMREGLSTVIVGKPNVGKSSMLNNLI 242 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 + + AIVT++ GTTRDVL +++ G +++ DTAGIR+T+DIVEK G++R+ + AD Sbjct: 243 QDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDIVEKIGVERSRKALSEAD 302 Query: 301 LILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTY-TEEYDHLI-------- 343 LIL + +N+ + ++ KN D I I K+DL E +I Sbjct: 303 LILFV--LNNNEPLTQEDRTLYEVIKNEDAIVIVNKTDLEQNLDINEVKEMIGDTPLIQT 360 Query: 344 SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCG 401 S EG+++L +I+ + + + S+ RH+ L Q ++ A E Sbjct: 361 SMLKQEGIDQLELQIRDLFFGGDVQNQDMTYVSNSRHISLLKQARNAIQDAIDAAESGIP 420 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+I G ++L+D +FS+FC+GK Sbjct: 421 MDMVQIDLTRTWELLGEIIGESASDELIDQLFSQFCLGK 459 >gi|322391875|ref|ZP_08065340.1| thiophene and furan oxidation protein ThdF [Streptococcus peroris ATCC 700780] gi|321145355|gb|EFX40751.1| thiophene and furan oxidation protein ThdF [Streptococcus peroris ATCC 700780] Length = 457 Score = 223 bits (569), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 152/460 (33%), Positives = 264/460 (57%), Gaps = 24/460 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKAS--LRYFFGLD- 57 + E +TI A+ST AI I+RLSG F + + I K K + AS L Y +D Sbjct: 2 ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKD-LSKVASHTLNYGHIIDP 60 Query: 58 --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 G+++D+ ++ SP++FT ED E + HGGIAV N IL+ LA RLA PGEF++ Sbjct: 61 QTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 119 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG++DL +AE++ D+I ++T+ ++++ + G LS L ++ + + +E + Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 179 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +D+ E +DV+ ++ V L + +++ + + G+I+R G I+G N GKSSL Sbjct: 180 IDYPEYDDVEEATTAVVREKTLEFEQLLTNLLKTARRGKILREGISTAIIGRPNVGKSSL 239 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N+L ++D AIVTDI GTTRDV+ +++ G +K+ DTAGIRETDDIVE+ G++R+ Sbjct: 240 LNSLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGVERSKKA 299 Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTY--TEEYDHL--ISS 345 ++ ADL+LL+ + ++ + ++ + I + K+DL E D + IS Sbjct: 300 LKEADLVLLVLNASEPLTAQDRQLLEISQDTNRIILLNKTDLPEAIETAELPDDVIRISV 359 Query: 346 FTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGL 402 + ++++ +I ++ + + + S+ RH+ + + V L+ ++NE + G+ Sbjct: 360 LKNQNIDKIEERINNLFFENAGLVEQDATYLSNARHISLIEKAVESLQ--AVNEGLELGM 417 Query: 403 --DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D++ +L LG+ITG ++L+ +FS+FC+GK Sbjct: 418 PVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457 >gi|148998838|ref|ZP_01826274.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP11-BS70] gi|168576255|ref|ZP_02722149.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae MLV-016] gi|307067807|ref|YP_003876773.1| putative GTPase [Streptococcus pneumoniae AP200] gi|147755265|gb|EDK62316.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP11-BS70] gi|183577997|gb|EDT98525.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae MLV-016] gi|306409344|gb|ADM84771.1| Predicted GTPase [Streptococcus pneumoniae AP200] Length = 457 Score = 223 bits (569), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 149/459 (32%), Positives = 257/459 (55%), Gaps = 22/459 (4%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55 + E +TI A+ST AI I+RLSG F + + I K K + AS +G Sbjct: 2 ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKD-LNKVASHTLNYGHIIDP 60 Query: 56 LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 L G+++D+ ++ SP++FT ED E + HGGIAV N IL+ LA RLA PGEF++ Sbjct: 61 LTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 119 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG++DL +AE++ D+I ++T+ ++++ + G LS L ++ + + +E + Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 179 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +D+ E +DV+ ++ V + + ++ + + G+I+R G I+G N GKSSL Sbjct: 180 IDYPEYDDVEEATTAVVREKTMEFEQLLTKLLRTARRGKILREGISTAIIGRPNVGKSSL 239 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N L ++D AIVTDI GTTRDV+ +++ G +K+ DTAGIRETDDIVE+ G++R+ Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGVERSKKA 299 Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYST-----YTEEYDHLIS 344 ++ ADL+LL+ + ++ + ++ + I + K+DL T EE IS Sbjct: 300 LKEADLVLLVLNASEPLTAQDRQLLEISQDTNRIILLNKTDLPETIETSKLPEEVIR-IS 358 Query: 345 SFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCG 401 + ++++ +I ++ + + + S+ RH+ + + V L+ + E Sbjct: 359 VLKNQNIDKIEERINNLFFENAGLVEQDATYLSNARHISLIEKAVESLQAVNQGLELGMP 418 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+ITG ++L+ +FS+FC+GK Sbjct: 419 VDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457 >gi|162448238|ref|YP_001621370.1| tRNA modification GTPase TrmE [Acholeplasma laidlawii PG-8A] gi|189036193|sp|A9NE34|MNME_ACHLI RecName: Full=tRNA modification GTPase mnmE gi|161986345|gb|ABX81994.1| tRNA modification GTPase [Acholeplasma laidlawii PG-8A] Length = 448 Score = 223 bits (569), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 159/450 (35%), Positives = 253/450 (56%), Gaps = 20/450 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYF---FGLDGRILD 62 +TI A++T + IS+IR+SG I K K K+ ++ DG ILD Sbjct: 4 QTIAAIATPLGTAGISVIRVSGDEAISKVNQIFKGKNLNKVKSHTIHYGHILNEDGSILD 63 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 + ++ VF +P+SFT ED E HGGI + +LE + + + LA PGEFS+RAF NG+ Sbjct: 64 EVMISVFIAPKSFTKEDVVEISTHGGILITQKVLERILE-TGIELAQPGEFSKRAFLNGR 122 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 IDL++AE++ D+I + E +++ + ++ SS+ K+ + + IE ++D+ E + Sbjct: 123 IDLVQAEAIMDIIHATNENAIKVANKALNKATSSMIDNLKSKVLTLIAQIEVNIDYPEYD 182 Query: 183 DVQNFSSKEVL----NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 D SKE++ ND+L NDI +++ K + IR G K VI+G N GKSSL NA Sbjct: 183 DAI-IMSKELIYPRVNDLLDEINDI---LTKSKRTQYIREGVKTVIVGRPNVGKSSLLNA 238 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L ++ AIV+DI GTTRD + ++L+G +++ DTAGIR+ D +EK G+ R+ + Sbjct: 239 LLNEERAIVSDIAGTTRDTIDAFVNLDGVTLQLIDTAGIRDALDTIEKIGVDRSRKAIHE 298 Query: 299 ADLILLLKEINSK--KE----ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLE 352 A+L+LL+ +++ K KE ++ ++ + I IG K DL S + + IS+ EGL Sbjct: 299 AELVLLVLDLSQKLTKEDEMLLTLTEHKNRIIIGNKKDLPSYLEIDTNVQISTLEKEGLS 358 Query: 353 ELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE-MASLNEKDCGLDIIAENLR 410 L ++I K++ + F+ S+ RH+ L + LE + + D +DI A +L Sbjct: 359 VLESEILKTLKLDNLVDKDFNYLSNVRHIQKLKEAKTSLESVINAIHHDMPVDIYAVDLT 418 Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A LG+I G LL +FSKFC+GK Sbjct: 419 TAWNRLGEILGNHQYGDLLTELFSKFCLGK 448 >gi|238018228|ref|ZP_04598654.1| hypothetical protein VEIDISOL_00052 [Veillonella dispar ATCC 17748] gi|237864699|gb|EEP65989.1| hypothetical protein VEIDISOL_00052 [Veillonella dispar ATCC 17748] Length = 461 Score = 223 bits (569), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 157/463 (33%), Positives = 261/463 (56%), Gaps = 34/463 (7%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGLD---G 58 +TI A++T + IIR+SG F + + K P + +++Y +D Sbjct: 5 DTIAAIATPPGIGGVGIIRVSGKDSFPIVNSLFKSAGTVPLMDRQNRTIQYGTIVDPGTN 64 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 + +D+ L+++ P S+T ED E HGGI V IL+ L ++R+A GEF++RAF Sbjct: 65 KTIDEVLVLLMKGPHSYTAEDVVEIQCHGGIVPVRQILKLLVNH-DVRMAEAGEFTKRAF 123 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG+IDL +AE++ D+I ++TE L++ + G +SS ++L + + +E +D+ Sbjct: 124 MNGRIDLTQAEAIIDIIEAKTEDSLSLAVSQLDGTVSSFVKDVREQLIAMIAHLEVTIDY 183 Query: 179 SEEEDVQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 EE D+++ +S+EV L IL +D+ S + G+L IR+G VI+G NAGKSSL Sbjct: 184 PEE-DIEDVTSQEVREQLEPILKAMDDLLSTANTGRL---IRDGITTVIVGRPNAGKSSL 239 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 NAL +++ AIVTDIPGTTRD + + +EG +++ DTAGIR+T D VE G++R Sbjct: 240 MNALLRENRAIVTDIPGTTRDSIEEYMTVEGISLRLIDTAGIRDTQDTVEALGVERARDY 299 Query: 296 VENADLILLLKEIN---SKKEISFPKNI---DFIFIGTKSDLYSTYTEEY--DH------ 341 + AD++L + + + + +EI ++ + I + KSD+ T+E+ +H Sbjct: 300 INKADIVLCVIDGSTPLTPEEIEILTSVSGLNTIVLLNKSDMAQVVTDEHIKEHGNFTAI 359 Query: 342 -LISSFTGEGLEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399 IS+ GEG L ++ ++ + K+ ++ S+ RH+ + Q +E A L+ D Sbjct: 360 ERISAKEGEGSAVLSKWVQELVYGGRVKQDNSAMISNVRHISLMEQAKAQVEQA-LSSID 418 Query: 400 CGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G+ D +A +LR A LG ITG E ++D +FS+FC+GK Sbjct: 419 MGMPVDFVATDLRSAWELLGDITGDTIRESMIDELFSRFCLGK 461 >gi|295111068|emb|CBL27818.1| tRNA modification GTPase TrmE [Synergistetes bacterium SGP1] Length = 456 Score = 223 bits (569), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 155/461 (33%), Positives = 229/461 (49%), Gaps = 26/461 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGLDG- 58 M+ +T+ A+ST + I+++R+SG + I + K FP ++R LDG Sbjct: 1 MHAPSDTVAAISTAWGEAGIAVVRVSGSCAVPLARSILRFGPKGFPPPRTMRLAALLDGA 60 Query: 59 -RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 +D+ L + FP P SFTGED E H HGG V LE L + R+A PGEF+RRA Sbjct: 61 DNAIDQVLAVHFPGPHSFTGEDVVEVHTHGGTLVAQLCLEGLLRR-GARMAEPGEFTRRA 119 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NG++DL +AES+ +I S +E R + +SGE S Q D+L ++ +E LD Sbjct: 120 FLNGRMDLSQAESVLGIIRSRSEEALRAAARTLSGEFSEFVRQIRDELLTLQGDLEVGLD 179 Query: 178 FSEEED--VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 F E+ V + L + D+ S LG ++R G ++VI G N GKSSL Sbjct: 180 FPEDAAPAVDPIGLYDALETLRITLRDLEDRCS---LGLLLREGIRVVISGRPNVGKSSL 236 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 NAL K+ AIVT +PGTTRD++ + G +++ DTAG+R D VE GI+R Sbjct: 237 LNALLKQSRAIVTAVPGTTRDIIEETVTYRGIPIRLVDTAGLRVPSDEVEASGIERARAA 296 Query: 296 VENADLILLL---------------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD 340 ++ AD+ L L + + +++ I D T+ DL + E Sbjct: 297 LKQADICLWLLDGSAPLEDADRDYIRSLGTRESIIVLNKADKALAVTEDDLRAIVPEGRT 356 Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKD 399 IS+ TGEGL+ L + + ++ L + R L L + E + E D Sbjct: 357 LAISAKTGEGLDAL-KEAIAAIATAGGALDVGLNVTARQLSELRACAEAIAEAQRVLEAD 415 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G D+ A L A +L + G + LLD IFS+FC+GK Sbjct: 416 MGQDVTAALLGTARKALERTLGIAADDDLLDSIFSRFCVGK 456 >gi|51858159|dbj|BAD42317.1| Thiophene and furan oxidation protein [Symbiobacterium thermophilum IAM 14863] Length = 437 Score = 223 bits (569), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 150/452 (33%), Positives = 239/452 (52%), Gaps = 49/452 (10%) Query: 23 IRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGL--DGRILDKGLLIVFPSPESFT 76 +R+SG QV E I + ++ P R ++ Y + + G +D+ L +V P S+T Sbjct: 1 MRISGADALQVAERIFRPRRGRPLGCRRSHTVTYGWVVTPGGDRIDEALALVMRGPHSYT 60 Query: 77 GEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLIS 136 GED E HGG V +LE+ A RLA PGEF+RRAF NG++DL +AE++ DLI Sbjct: 61 GEDVVELQCHGGQLAVRRVLEQ-ALQAGARLAEPGEFTRRAFLNGRLDLSQAEAVVDLIR 119 Query: 137 SETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE-DVQNFSSKEVLND 195 ++T+ ++ + G L G+ ++L + + +EAD+DF E E +VQ + +EV Sbjct: 120 AKTDRAMAAAVAHLRGSLRQAIGRIRERLMEMMAHLEADIDFPELELEVQ--TREEVAAG 177 Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255 + ++ + + G I+R G + V+ G N GKSSL N L +++ AIVT IPGTTR Sbjct: 178 CAWCLGEVERLLGGARTGRILREGLRAVLAGRPNVGKSSLLNRLVRENRAIVTPIPGTTR 237 Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS----- 310 DV+ ++L G V++ DTAG+R TDD VE+ G+ RT + A L+L++ + + Sbjct: 238 DVIAEWVELGGVPVQLFDTAGLRPTDDPVERIGVARTHEALAQAHLVLVVVDAAAGLGPE 297 Query: 311 -KKEIS-FPKNIDFIFIGTKSDLYSTYTEEYDHL-----------ISSFTGEGLEELINK 357 ++ IS P+ + + K DL + E L +S+ TGEG + L + Sbjct: 298 DREWISQLPQGAARVGVANKIDLNPAF--ELSALREALGGAPVVGVSAETGEGFDALEAE 355 Query: 358 IKSILSNKF---------KKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAEN 408 + + + F + +I + HL T+ E G +++A + Sbjct: 356 VARV-AGAFDASEELLVNARQAEAIRRARNHLRDAQATL---------ESGLGDELVAID 405 Query: 409 LRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LR A ++LG++TG E+LLD IFS+FCIGK Sbjct: 406 LRAAWMALGEVTGETAGEELLDQIFSRFCIGK 437 >gi|113478139|ref|YP_724200.1| tRNA modification GTPase TrmE [Trichodesmium erythraeum IMS101] gi|123056073|sp|Q10VJ7|MNME_TRIEI RecName: Full=tRNA modification GTPase mnmE gi|110169187|gb|ABG53727.1| tRNA modification GTPase trmE [Trichodesmium erythraeum IMS101] Length = 467 Score = 223 bits (569), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 160/471 (33%), Positives = 261/471 (55%), Gaps = 47/471 (9%) Query: 5 KETIFAVSTGALPS--AISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFF--GLDG 58 + TI A++T +P ++ I+R+SG ++ + F K+ + L + G Sbjct: 9 RNTIAAIATAIVPQQGSVGIVRMSGSEAMKIAQTLFHAPGKQVWETHHILYGYIRHPHTG 68 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 +++D+ LL++ +P S+T ED EFH HGGI + +L+ L LA PGEF+ RAF Sbjct: 69 QLVDETLLLIMKAPRSYTREDVVEFHCHGGIIAIQQVLQ-LCIEAGAELAQPGEFTLRAF 127 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG++DL +AES+A+L+ S++ ++++ G+ G+L+S I + IEA +DF Sbjct: 128 LNGRLDLTQAESIAELVGSQSPAAAQVALAGLQGKLASPIRHLRACCLDILAEIEARIDF 187 Query: 179 SEEEDVQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 EED+ E+ L+DIL D+S ++ GE++R G K+ I+G N GKSSL Sbjct: 188 --EEDLPPLDESEISQKLDDILV---DLSMVLATASRGELLRTGLKVAIIGRPNVGKSSL 242 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 NA + D AIVTD+PGTTRDV+ L + G V++ DTAGIRET+D VEK G++R+ Sbjct: 243 LNAWSHSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETEDRVEKIGVERSCQA 302 Query: 296 VENADLILL---------------LKEINSKKEISFPKNIDFIFIGTKSDLYST--YTEE 338 E+AD++LL +++ + I +D + + S+L + Y E Sbjct: 303 AESADIVLLTIDAQVGWTELDEVIYQQVKHRFLILIINKVDQVDL-VHSELIRSIFYPET 361 Query: 339 YDHLISS--FTGEGLEEL----INKIKSILSN-KFKKLPFSIPSHKRHLYHLSQTVRYLE 391 +++++ +G+EEL +N + L N + + L F++ ++R L++ LE Sbjct: 362 IKNVVATAAINNQGIEELEAAILNAVN--LDNVQPENLDFAV--NQRQAAALTRAKIALE 417 Query: 392 MASLN--EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LN + + LD +LR + +LG++TG E +LDIIFS+FCIGK Sbjct: 418 QC-LNTIKNNLPLDFWTIDLRGSIYALGEVTGEDVTESVLDIIFSRFCIGK 467 >gi|149182297|ref|ZP_01860776.1| tRNA modification GTPase [Bacillus sp. SG-1] gi|148849989|gb|EDL64160.1| tRNA modification GTPase [Bacillus sp. SG-1] Length = 461 Score = 223 bits (569), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 155/464 (33%), Positives = 260/464 (56%), Gaps = 31/464 (6%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK--KKKPFPRKASLRYFFG--LD-- 57 E +TI A+ST AI+I+RLSG F + + + K K AS +G +D Sbjct: 2 EFDTIAAISTPMGEGAIAIVRLSGDQAFDIADKVFKGIKGNSVHEFASHTINYGHIVDSS 61 Query: 58 -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 G ++++ ++ V P++FT ED E + HGG+ VN +L+ + K RLA PGEF++R Sbjct: 62 TGAVVEEVMMSVMKGPKTFTREDIIEINCHGGLVSVNKVLQLVLK-NGARLAEPGEFTKR 120 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NG++DL +AE++ DLI ++T+ +++ M G LS L + ++ + +E ++ Sbjct: 121 AFLNGRVDLSQAEAVMDLIRAKTDRAMNVALNQMEGRLSKLIRKLRQEILETLAHVEVNI 180 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D+ E +DV+ + +L +++++I + + G+I+R G VI+G N GKSSL Sbjct: 181 DYPEYDDVEEMTHGVLLEKSKYVRDEIEKLLRTSEQGKILREGLSTVIVGRPNVGKSSLL 240 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N+L ++ AIVTDIPGTTRDV+ +++ G +++ DTAGIRET+DIVE+ G++R+ + Sbjct: 241 NSLVHENKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDIVERIGVERSRQVL 300 Query: 297 ENADLILLLKEINSKKEISFP--------KNIDFIFIGTKSDL--------YSTYTEEYD 340 + ADLILL+ +N E ++ + +D I I K+DL E+ Sbjct: 301 KEADLILLV--LNYSDEFTYEDEQLFKAVEGMDVIVIVNKTDLPQKIDMDRVKELAAEHA 358 Query: 341 HLISSFTGE-GLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398 + +S E G++EL I ++ + + + S+ RH+ L+Q ++ A +N Sbjct: 359 VVTTSLLEEQGIDELEEAISTLFFAGSLEAGDMTYVSNSRHIALLNQAHGAIDEA-INGV 417 Query: 399 DCG--LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + G +DI +L LG+I G E L+D +FS+FC+GK Sbjct: 418 EMGTPIDIAQIDLTRTWELLGEIIGESVHESLIDQLFSQFCLGK 461 >gi|218248879|ref|YP_002374250.1| tRNA modification GTPase TrmE [Cyanothece sp. PCC 8801] gi|218169357|gb|ACK68094.1| tRNA modification GTPase TrmE [Cyanothece sp. PCC 8801] Length = 460 Score = 223 bits (568), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 152/460 (33%), Positives = 246/460 (53%), Gaps = 33/460 (7%) Query: 6 ETIFAVSTGALPS--AISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL----- 56 ETI A++T +P +I I+RLSG + F ++ + S R +G Sbjct: 9 ETIAAIATAIVPQQGSIGIVRLSGNQAVTIARQLFTAPGQQKW---ESHRILYGYIRHPQ 65 Query: 57 DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 +++D+ LL++ +P S+T ED EFH HGGI V +L+ L +LA PGEF+ R Sbjct: 66 TQQVIDEALLLLMLAPRSYTREDVVEFHCHGGIIPVQQVLQ-LCVEQGAKLAQPGEFTLR 124 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NG+IDL +AES+A L+ + + ++++ G+ G+L+ Q D+ I + +EA + Sbjct: 125 AFLNGRIDLTQAESVAQLVGARSPQASQMALAGLQGKLAQPIRQLRDRCLDILAEVEARI 184 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 DF EED+ ++ + + + + ++ GE++R G K+ I+G N GKSSL Sbjct: 185 DF--EEDLPPLDENSIIEGLQDILTHVQALLATADRGELLRTGLKVAIVGRPNVGKSSLL 242 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 NA ++ D AIVTD+PGTTRDV+ L + G +++ DTAGIRET D VEK G++R+ Sbjct: 243 NAWSRSDRAIVTDLPGTTRDVVESQLIVGGIPIQVLDTAGIRETADRVEKLGVERSRHVA 302 Query: 297 ENADLILLLKEIN----SKKEISFP--KNIDFIFIGTKSDL----YSTYTEEYDHLISSF 346 ADL+LL + ++ E + ++ I + K DL ++ + ++ + Sbjct: 303 SQADLVLLTIDAQMGWTTEDEAIYQQVQHRPLILVINKIDLGLADSLSFIPQIKQIVKTV 362 Query: 347 TG--EGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS---LNEKDC 400 +G+E+L I S+ S + + ++R L++ LE +N+ Sbjct: 363 AAQNQGIEQLEKAILASVESQNIQAANLDLAINQRQAAVLTRAKIALEKVQETIVNQ--L 420 Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LD +LR A +LG+ITG E +LD IFS+FCIGK Sbjct: 421 PLDFWTIDLRAAIQALGEITGEEITESVLDRIFSRFCIGK 460 >gi|289551831|ref|YP_003472735.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Staphylococcus lugdunensis HKU09-01] gi|289181362|gb|ADC88607.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Staphylococcus lugdunensis HKU09-01] Length = 459 Score = 223 bits (568), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 150/457 (32%), Positives = 253/457 (55%), Gaps = 23/457 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD---GRI 60 +TI ++ST AI I+RLSGP ++ + + K K S +G +D + Sbjct: 4 DTITSISTPMGEGAIGIVRLSGPQAIEIGDKLYKGKYKLAEVDSHTINYGHIVDPETNEV 63 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +++ ++ V +P++FT ED E + HGGI +N +LE L R+A PGE+S+RAF N Sbjct: 64 VEEVMISVLRAPKTFTREDIIEINCHGGILTINRVLE-LTMTHGARMAEPGEYSKRAFLN 122 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G+IDL +AE++ D I S+T+ +++M + G LS L + + I + +E ++D+ E Sbjct: 123 GRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKRQRQSILEILAQVEVNIDYPE 182 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 +DV++ +++ +L +K +I + G G+I+R G VI+G N GKSS+ N L Sbjct: 183 YDDVEDATTEFLLEQSKNIKAEIDKLLETGAQGKIMREGLSTVIVGKPNVGKSSMLNNLI 242 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 + + AIVT++ GTTRDVL +++ G +++ DTAGIR+T+DIVEK G++R+ + AD Sbjct: 243 QDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDIVEKIGVERSRKALSQAD 302 Query: 301 LILLLKEIN---SKKEISF---PKNIDFIFIGTKSDLYSTYT-EEYDHLI--------SS 345 LIL + N +K++ + +N D I I K+DL EE +I S Sbjct: 303 LILFVLNYNEPLTKEDRTLFEVIENEDVIVIVNKTDLVQQLNIEEVQEMIGNKPLIQTSM 362 Query: 346 FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLD 403 EG++EL +I+ + + + S+ RH+ L Q ++ A E +D Sbjct: 363 LKQEGIDELEIQIRDLFFGGDVQNQDMTYVSNSRHIALLKQARHAIQDAIDAAESGVPMD 422 Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++ +L LG+I G ++L++ +FS+FC+GK Sbjct: 423 MVQIDLTRTWEILGEIIGESASDELINQLFSQFCLGK 459 >gi|90194130|gb|ABD92626.1| ThdF [Mannheimia varigena] Length = 436 Score = 223 bits (568), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 149/437 (34%), Positives = 237/437 (54%), Gaps = 29/437 (6%) Query: 19 AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGE 78 + I+R+SGP V E + KK PR A+ F DG +LD+G+ + F +P SFTGE Sbjct: 7 GVGILRVSGPLAETVAEAVVGKKLQ-PRLANYLPFKDEDGTVLDQGIALFFKAPNSFTGE 65 Query: 79 DSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSE 138 D E HGG +++ +L+ + ++ +R+A GEFS +AF N K+DL +AE++ADLI + Sbjct: 66 DVLELQGHGGQVILDLLLKRILQVKGVRIARAGEFSEQAFLNDKLDLAQAEAIADLIDAT 125 Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LND 195 +E R +++ + GE S+ +D + ++R+++EA +DF +EE + + ++ LND Sbjct: 126 SEQAARSALKSLQGEFSNKINALVDDVIYLRTYVEAAIDFPDEE-IDFLADGKIEAKLND 184 Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255 I+ + + QG I+R G K+VI G NAGKSSL NALA ++ AIVT+I GTTR Sbjct: 185 IIAQLDGVRREAKQGS---ILREGMKVVIAGRPNAGKSSLLNALAGREAAIVTNIAGTTR 241 Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 DVL + ++G + I DTAG+R+ D VE+ GI R + E+ AD +LL+ + + Sbjct: 242 DVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIARAWDEIAQADHVLLMIDSTEQTADQ 301 Query: 316 F-----------PKNIDFIFIGTKSDLYS-----TYTEEYDHL-ISSFTGEGLEELINKI 358 F P N+ I K DL E++ + +S+ T G++ L + Sbjct: 302 FRNEWADFLAKLPANMPVTVIRNKVDLSGEPEGLIQVEDFTMIRLSAQTKVGVDLLREHL 361 Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLASVSL 416 K + + + +RHL L +LE L + G +++AE LR+ +L Sbjct: 362 KKSMGYQ-SSTEGGFLARRRHLQALETAADHLERGHIQLTQFFAG-ELLAEELRMVQNAL 419 Query: 417 GKITGCVDVEQLLDIIF 433 +ITG + LL IF Sbjct: 420 SEITGQFTSDDLLGNIF 436 >gi|295669029|ref|XP_002795063.1| tRNA modification GTPase GTPBP3 [Paracoccidioides brasiliensis Pb01] gi|226285756|gb|EEH41322.1| tRNA modification GTPase GTPBP3 [Paracoccidioides brasiliensis Pb01] Length = 627 Score = 223 bits (568), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 123/328 (37%), Positives = 192/328 (58%), Gaps = 29/328 (8%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLDGR-----I 60 TI+A+ST +AI+IIR+SGP C Q+ + +C K P PR ASL + R I Sbjct: 87 TIYALSTAPGRAAIAIIRVSGPGCVQIYKALCPKSPLPTPRVASLHTLYDPLLRPSINTI 146 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP-----------NLRLAN 109 LD+ +++ FP+P++ TGED E HVHGG AVV +L + + ++R A Sbjct: 147 LDRAMVLYFPAPKTVTGEDLLELHVHGGPAVVKAVLNAIPRCAKVDFTGSNFPLSIRYAE 206 Query: 110 PGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR 169 PGEF+RRAF N ++ L + E+L++ +S+ETE QRRL++ G S L++ Y +W +L R Sbjct: 207 PGEFTRRAFLNDRLSLPQIEALSNTLSAETEQQRRLAIRGTSDALATRYERWHQQLISAR 266 Query: 170 SFIEADLDFSEEEDVQNFSSKEVL---NDILFLKNDISSHISQGKLGEIIRNGYKIVILG 226 +EA +DFSE++ + + VL +++ L I+ H+ GE++RNG K+ +LG Sbjct: 267 GEMEALIDFSEDQHFDESAEEFVLSVTDEVRNLVRQINLHVENASKGELLRNGIKVALLG 326 Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD---- 282 NAGKSSL N + ++ AIV+ GTTRD++ + +D+ G+ K D AG+R Sbjct: 327 APNAGKSSLLNRIVGREAAIVSSEEGTTRDIVDVGVDIGGFFCKFGDMAGLRPDHSAQVG 386 Query: 283 -----IVEKEGIKRTFLEVENADLILLL 305 VEKEGI+R +D+++++ Sbjct: 387 QMPIGAVEKEGIRRAKARALESDVVIVV 414 >gi|317148818|ref|XP_001822938.2| cytokinesis protein sepA [Aspergillus oryzae RIB40] Length = 2209 Score = 223 bits (568), Expect = 4e-56, Method: Composition-based stats. Identities = 124/322 (38%), Positives = 192/322 (59%), Gaps = 23/322 (7%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFG-----LDGRI 60 TI+A+ST + +AI+++R+SGP C ++ + +C K P PR A++R F Sbjct: 1665 TIYALSTASGRAAIAVVRVSGPGCVRIYQALCPKAALPRPRFAAVRTLFDPTREPSSSSA 1724 Query: 61 LDKGLLIV-FPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN----LRLANPGEFSR 115 LD G L++ FP+P + TGED E H+HGG A+V +L ++++ +R A PGEF+R Sbjct: 1725 LDAGALVLYFPAPNTVTGEDVLELHLHGGPAIVKSVLTAISRVSQPDSLVRYAEPGEFTR 1784 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF N ++DL + E+L D +S++TE QRRL++ G S LS Y QW +L + R +EA Sbjct: 1785 RAFMNNRLDLPQIEALGDTLSADTEQQRRLAVRGASDALSRRYEQWRQQLLYARGELEAL 1844 Query: 176 LDFSEEEDVQNFSSKEVLN---DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232 +DF+E++ S + VL+ + L+ + HI GE++R+G KI +LG NAGK Sbjct: 1845 IDFAEDQHFDESSDELVLSVAAQVQALRVQVGFHIQNASKGELLRHGIKIALLGAPNAGK 1904 Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD---------DI 283 SSL N + K+ AIV+ GTTRD++ + +DL G+ K+ D AGIR Sbjct: 1905 SSLLNQIVGKEAAIVSTEEGTTRDIVDVGVDLSGWYCKLGDMAGIRSEPVNGKESVVIGA 1964 Query: 284 VEKEGIKRTFLEVENADLILLL 305 VEKEGI+R +D+++++ Sbjct: 1965 VEKEGIRRAKARALESDVVIVV 1986 Score = 41.6 bits (96), Expect = 0.26, Method: Composition-based stats. Identities = 22/44 (50%), Positives = 31/44 (70%), Gaps = 5/44 (11%) Query: 402 LDII--AENLRLASVSLGKITG---CVDVEQLLDIIFSKFCIGK 440 +DI+ AE+LR A+ +L KITG DVE +L ++F KFC+GK Sbjct: 2166 IDIVTAAEHLRFAADALAKITGKGESGDVEDVLGVVFEKFCVGK 2209 >gi|254478023|ref|ZP_05091407.1| tRNA modification GTPase TrmE [Carboxydibrachium pacificum DSM 12653] gi|214036027|gb|EEB76717.1| tRNA modification GTPase TrmE [Carboxydibrachium pacificum DSM 12653] Length = 460 Score = 223 bits (568), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 159/471 (33%), Positives = 256/471 (54%), Gaps = 46/471 (9%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRK-------ASLRYFFGL 56 E +TI A+ST + I I+R+SG + I + P+ +K +L Y + Sbjct: 2 EFDTIAAISTSPGEAGIGIVRISGDRALDIISRIFR---PYKKKDVKNVKTHTLHYGHIV 58 Query: 57 D---GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEF 113 D G + D+ L+ + P ++T ED E + HGGI V + ILE + K RLA PGEF Sbjct: 59 DPDTGEVYDEVLVSIMKKPNTYTREDIVEINCHGGIVVTSKILELVLKQ-GARLAEPGEF 117 Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173 ++RAF NG+IDL +AE++ D+I+++T + + + + +SG L + D++ + + + Sbjct: 118 TKRAFLNGRIDLSQAEAVIDIITAKTMLANKYAQKQLSGYLGQKMRKLKDRMMELLAHLL 177 Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233 A +DF E+ DV ++L + +I I+ + G IIR G K I+G N GKS Sbjct: 178 ALIDFPED-DVDELERWQMLESAKEILKEIEKLIASAESGRIIREGLKTAIIGKPNVGKS 236 Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293 SL NAL K++ AIVTDIPGTTRD++ L+++G +++ DTAGIR+TD++VEK G++R+ Sbjct: 237 SLLNALLKENRAIVTDIPGTTRDIIEEYLNVKGIPIRLIDTAGIRDTDELVEKIGVERSK 296 Query: 294 LEVENADLILLLKEINSKKEIS----------FPKNIDFIFIGTKSDLYSTYTEEYDHLI 343 + ADL+L + I++ +E+S KNI IF+ K DL EE + Sbjct: 297 EVLGEADLVLFV--IDASRELSKEDYEIFDILTGKNI--IFVLNKIDLPKKIDEEE---L 349 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFS-------------IPSHKRHLYHLSQTVRYL 390 + T +G+ ++ +K I K ++ ++ I ++ RH L +Y+ Sbjct: 350 RNLTKDGIIVEVSTVKKIGLEKLEETIYNLVFKGNVTIGNEEIITNTRHKEALINAKKYM 409 Query: 391 E-MASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E + EK D+I +L A +GKITG E ++D IF +FC+GK Sbjct: 410 ESVVEAIEKGYSEDLITIDLNSALNEIGKITGETATEDVIDQIFERFCVGK 460 >gi|326390368|ref|ZP_08211927.1| tRNA modification GTPase TrmE [Thermoanaerobacter ethanolicus JW 200] gi|325993645|gb|EGD52078.1| tRNA modification GTPase TrmE [Thermoanaerobacter ethanolicus JW 200] Length = 462 Score = 223 bits (568), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 163/461 (35%), Positives = 250/461 (54%), Gaps = 30/461 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA----SLRYFFGLDGR-- 59 +TI A+ST + I I+R+SG ++ I K KP K +L Y +D Sbjct: 6 DTIAAISTFPGEAGIGIVRISGDDALEIISKIFKPYKPKNIKKVKSHTLHYGHIVDPETE 65 Query: 60 -ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 + D+ L+ + P ++T ED E + HGGI V + ILE + K RLA PGEF++RAF Sbjct: 66 EVYDEVLVSIMKKPNTYTREDIVEINCHGGIVVTSKILELVLKQ-GARLAEPGEFTKRAF 124 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG+IDL +AE++ D+I+++T + + + + +SG + + DK+ + + A +DF Sbjct: 125 LNGRIDLSQAEAVIDIITAKTMLANKYAQKQLSGHIGQKMKELKDKIMGLLVHLLALIDF 184 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E+ DV+ KE+L + DI I+ + G IIR G K I+G N GKSSL NA Sbjct: 185 PED-DVEELERKEMLETAKEIVEDIDKLIASSESGMIIREGLKTAIIGKPNVGKSSLLNA 243 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L K++ AIVTDIPGTTRD++ ++++G +K+ DTAGIR+TD++VEK G+ ++ + Sbjct: 244 LLKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAGIRDTDELVEKIGVAKSKEVLAE 303 Query: 299 ADLIL--------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTE-EYDHL------- 342 ADLIL L KE +I KNI +F+ K DL E E +L Sbjct: 304 ADLILFVLDASRELTKEDYEIFDILVGKNI--VFVLNKIDLPKKIDEKELKNLTKDGIII 361 Query: 343 -ISSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE-MASLNEKD 399 +S+ GL+EL + I + + I ++ RH L +Y+E + E++ Sbjct: 362 EVSTVEKIGLQELEDTIYNLVFKGNINVKEDEIITNSRHKEALINAKKYMESVVEAIERE 421 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D+I +L A +GKITG E L++ IF +FC+GK Sbjct: 422 YSEDLITIDLNAALEQIGKITGETATEDLINQIFERFCVGK 462 >gi|225849761|ref|YP_002729995.1| tRNA modification GTPase TrmE [Persephonella marina EX-H1] gi|225645890|gb|ACO04076.1| tRNA modification GTPase TrmE [Persephonella marina EX-H1] Length = 452 Score = 223 bits (568), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 153/456 (33%), Positives = 256/456 (56%), Gaps = 26/456 (5%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL----DGRI 60 K+TI A +T +PSA+SIIR+SG ++ + + + + R +FG G + Sbjct: 3 KDTIVANATPLIPSAVSIIRISGDRALEIGRKLFRLPESIRER---RVYFGKITDSKGSV 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+GL I F P SFTGED E + HG + VV I+EE + R A PGEF++RAF N Sbjct: 60 IDEGLFIFFKGPRSFTGEDVVEIYPHGSVPVVKKIIEEAVNL-GARFAQPGEFTKRAFIN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GKIDL +AE++ADLI + +E R+++ + G+LS + + L ++ S IEA+++F E Sbjct: 119 GKIDLTQAEAIADLIEARSEKASRVAVNILEGKLSEKVKELRNSLLYLVSLIEAEINFPE 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 DV+ ++ + + I + + GEIIR G K+ I+G N GKSSLFNAL Sbjct: 179 --DVEEIDPDQIKKGLEHVIKGIDDLLRTYRKGEIIREGIKLAIVGRPNVGKSSLFNALV 236 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 + AIV++ GTTRD + + ++G VK+ DTAG+RET+D +E GIK+ ++E AD Sbjct: 237 GYERAIVSEYRGTTRDFIEETVSIKGIPVKLLDTAGLRETEDKIELIGIKKAKEKIEEAD 296 Query: 301 LILLLKEIN---SKKEISFPKNIDF---IFIGTKSDLYS-----TYTEEYDHLISSFTGE 349 +++ + +++ + +++ + I + I +G KSDL + + ++Y F Sbjct: 297 VVIFVFDLSEGLTDEDLRIYEQIKYKDPIVVGNKSDLVNEKELDIFRKKYYFKNVLFVST 356 Query: 350 GLEELINKIKSILSNKFKKLPFS---IPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDI 404 L++ ++ ++ + +K + S I + RH L + L+ + +++E +I Sbjct: 357 KLQKNLDHLEEEIFHKLGIIEDSDSEIYINLRHYKALEKAKNILKKTVQNIDELIDFKEI 416 Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + + A L +ITG + E +L+ IFS+FCIGK Sbjct: 417 LMLEISEAEKYLEEITGEITTEDVLENIFSRFCIGK 452 >gi|294794209|ref|ZP_06759345.1| tRNA modification GTPase TrmE [Veillonella sp. 3_1_44] gi|294454539|gb|EFG22912.1| tRNA modification GTPase TrmE [Veillonella sp. 3_1_44] Length = 461 Score = 223 bits (568), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 153/460 (33%), Positives = 257/460 (55%), Gaps = 28/460 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGLD---G 58 +TI A++T + IIR+SG F + + K P + +++Y +D Sbjct: 5 DTIAAIATPPGIGGVGIIRVSGKDSFPIVNSLFKSTGTVPLMDRQNRTIQYGTIVDPMTN 64 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 + +D+ L+++ P S+T ED E HGGI V IL+ L N+R+A GEF++RAF Sbjct: 65 KTIDEVLVLLMKGPHSYTAEDVVEIQCHGGIVPVRQILKLLVNH-NVRMAEAGEFTKRAF 123 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG+IDL +AE++ D+I ++TE L++ + G +SS ++L + + +E +D+ Sbjct: 124 MNGRIDLTQAEAIIDIIEAKTEDSLSLAVSQLDGTVSSFVKDVREQLIAMIAHLEVTIDY 183 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 EE D+++ +S+EV + + + + +S G +IR+G VI+G NAGKSSL NA Sbjct: 184 PEE-DIEDVTSQEVRDQLQPILKAMEDLLSTANTGRLIRDGITTVIVGCPNAGKSSLMNA 242 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L +++ AIVTDIPGTTRD + + +EG +++ DTAGIR+T D VE G++R + Sbjct: 243 LLRENRAIVTDIPGTTRDSIEEYMTVEGISLRLIDTAGIRDTQDTVEALGVERARDYINK 302 Query: 299 ADLILLLKEINS---KKEISFPKNI---DFIFIGTKSDLYSTYTEE--YDH-------LI 343 AD++L + + ++ +EI ++ + I + KSD+ T+E +H I Sbjct: 303 ADIVLCVIDGSTPLNPEEIEILTSVSGLNTIVLLNKSDVAQVVTDENIKEHGNFTAIERI 362 Query: 344 SSFTGEGLEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402 S+ GEG L ++ ++ + K+ ++ S+ RH+ + Q +E A L+ D G+ Sbjct: 363 SAKEGEGSAVLSKWVQELVYGGRVKQDNRAMISNVRHISLMEQAKAQVEQA-LSSIDMGM 421 Query: 403 --DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D +A +LR A LG ITG E ++D +FS+FC+GK Sbjct: 422 PVDFVATDLRSAWELLGDITGDTIRESMIDELFSRFCLGK 461 >gi|312794739|ref|YP_004027662.1| tRNA modification gtpase trme [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181879|gb|ADQ42049.1| tRNA modification GTPase TrmE [Caldicellulosiruptor kristjanssonii 177R1B] Length = 455 Score = 223 bits (568), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 163/459 (35%), Positives = 247/459 (53%), Gaps = 27/459 (5%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-----PFP-RKASLRYFFGLD 57 E +TI A+ST I I+R+SG F + E + + +K P R A+L + D Sbjct: 2 EFDTIAAISTPIGTGGIGIVRISGKDAFDIAEKLIRSRKYKSIKDIPARYAALVDVYDGD 61 Query: 58 GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 +D+ +LI F SP S+TGED E HGG+ V+ ILE K R A PGEF++RA Sbjct: 62 -EFVDEAILIKFKSPHSYTGEDIVEIQSHGGMVVLKRILEAAIK-NGARHAMPGEFTKRA 119 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NG+IDL +AE++ D+I+S+T + ++ + + + G LS + L ++ + IEA +D Sbjct: 120 FLNGRIDLSQAEAVIDIINSKTRLLQQNAAKQLKGMLSQRIEEISQLLLNLVASIEASID 179 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 FSE E V E+L+ + I + + G+ I++G VI+G N GKSSL N Sbjct: 180 FSEHE-VDEVPHTEILSTVDAALQKIDKLLKSYETGKAIKSGIYTVIVGRPNVGKSSLLN 238 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 L K++ AIVTDIPGTTRDV+ LD+EG + ++DTAG+R+T+D+VEK G+K+T +E Sbjct: 239 RLLKEEKAIVTDIPGTTRDVIEEVLDIEGIPIILADTAGVRKTEDVVEKIGVKKTLESIE 298 Query: 298 NADLILLLKE--------------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI 343 ADL+L + E I K+ I ID + D+ + +E + Sbjct: 299 RADLVLFMIESSGILQEDLEIFETIKDKRFIVLVNKIDKEVKVSHEDIKRIFGKE--GIF 356 Query: 344 SSFTGEGLEELINK--IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401 S + EL+ K +L + + ++ RH L + +L A N Sbjct: 357 ISVEHDKNLELVEKAIANEVLDKDIEAFDSVLITNLRHKELLLKAKEFLLSAKENLDCVP 416 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LDI++ +++ A SL +ITG E ++D IFS FCIGK Sbjct: 417 LDILSIDIKNALESLYQITGKNVTEDMVDRIFSMFCIGK 455 >gi|296452686|ref|ZP_06894377.1| tRNA modification GTPase TrmE [Clostridium difficile NAP08] gi|296880062|ref|ZP_06904031.1| tRNA modification GTPase TrmE [Clostridium difficile NAP07] gi|296258468|gb|EFH05372.1| tRNA modification GTPase TrmE [Clostridium difficile NAP08] gi|296428929|gb|EFH14807.1| tRNA modification GTPase TrmE [Clostridium difficile NAP07] Length = 462 Score = 223 bits (567), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 165/457 (36%), Positives = 253/457 (55%), Gaps = 24/457 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK----KKKPFPRKASLRYFFGLDGR-I 60 +TI A++T I I+R+SG +V E I K K K +L Y +D I Sbjct: 8 DTIAAIATAPGEGGIGILRISGERALKVAEEIFKSMSGKSIEEYNKRTLIYGNIVDKENI 67 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+ LL P S+TGED E + HGG V ILE L ++RLA GEF++RAF N Sbjct: 68 IDEVLLAYMKGPNSYTGEDVIEINCHGGFISVKKILE-LILSKDVRLAEAGEFTKRAFLN 126 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G+IDL +AE++ D+I ++T++ ++ + G LS + DK+T I + +E +D+ E Sbjct: 127 GRIDLSQAEAVIDVIKAKTDIAHEVAQNQLEGSLSKKIRELRDKVTEILAHVEVAIDYPE 186 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E D+++ + + + + LK +I + G+I+R G K VI+G N GKSSL N++ Sbjct: 187 E-DIEHITYQTLKDKTDELKKEIKKLYDTAESGKILREGLKTVIVGKPNVGKSSLLNSIL 245 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDIPGTTRDV+ ++++G +KI DTAGIR+TDDIVEK G++R+ +AD Sbjct: 246 GENRAIVTDIPGTTRDVIEEFVNIKGIPLKIVDTAGIRDTDDIVEKIGVERSKESFTSAD 305 Query: 301 LILLLKEIN---SKKEISF---PKNIDFIFIGTKSDLYSTYTEE----YDH-----LISS 345 LI+++ + + S+++I K+ I + K+DL EE Y IS+ Sbjct: 306 LIVMVLDASRKLSEEDIEILEKLKDKQTIVLLNKNDLKQEIEEEKILKYVENNSIIKISA 365 Query: 346 FTGEGLEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLD 403 EG+EEL +KI+S++ K + ++ RH LS+ + A + E+ D Sbjct: 366 LQQEGIEELQDKIESMVYKGSIKNNSSLVVTNSRHKDALSKAYKSATDALIALEQSMPFD 425 Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + +L+ LG I G E LLD IF FCIGK Sbjct: 426 FVEVDLKNIWDYLGYINGDTVTEDLLDNIFHNFCIGK 462 >gi|76811890|ref|YP_331723.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 1710b] gi|254186626|ref|ZP_04893143.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei Pasteur 52237] gi|254261025|ref|ZP_04952079.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 1710a] gi|123600728|sp|Q3JXI0|MNME_BURP1 RecName: Full=tRNA modification GTPase mnmE gi|76581343|gb|ABA50818.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 1710b] gi|157934311|gb|EDO89981.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei Pasteur 52237] gi|254219714|gb|EET09098.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 1710a] Length = 467 Score = 223 bits (567), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 156/468 (33%), Positives = 242/468 (51%), Gaps = 36/468 (7%) Query: 4 EKETIFAVSTGALPSAISIIRLS-----GPSCFQVCEFICKKKKPFPRKASLRYFFGLDG 58 + + I A++T + I ++RLS + + + +C + PR AS F G Sbjct: 5 DSDPIVAIATASGRGGIGVVRLSLGRAGEAAARALSDALCGARL-MPRHASYVPFLDGAG 63 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEFSR 115 LD+G+ + FP+P S+TGE E HGG V+ +L+ + + LRLA PGEF+R Sbjct: 64 EPLDRGIALYFPAPHSYTGEHVIELQGHGGPIVLQLLLQRCLDAGRAHGLRLAEPGEFTR 123 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF N K+DL +AE++ADLI + +E R + + G S +D + +R +EA Sbjct: 124 RAFLNDKLDLAQAEAVADLIEASSEAAARSAGRSLDGAFSRDIHALVDDVIALRMLVEAT 183 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 LDF EEE + + + + ++ ++ + + G ++R G +V+ G N GKSSL Sbjct: 184 LDFPEEE-IDFLEAADARGKLAHIRERLAHVLGDARQGALLREGLSVVLAGQPNVGKSSL 242 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 NALA ++AIVT I GTTRD + + +EG + I DTAG+RET+D VEK GI RT+ E Sbjct: 243 LNALAGAELAIVTPIAGTTRDKVAQTIQIEGIPLHIIDTAGLRETEDEVEKIGIARTWGE 302 Query: 296 VENADLILLLKEINS-------KKEISFPKNIDFIFIGTKSDLY------------STYT 336 +E AD++L L + S FP + + + K+DL + Sbjct: 303 IERADVVLHLLDARSGLGPGDEAIAARFPDGVPVVRVLNKTDLTGAPASVTRTGGGAARA 362 Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL----SQTVRYLEM 392 + + +S+ G+G++ L ++ I + + + +RHL L + R E Sbjct: 363 DVCEVRLSAKRGDGIDLLRGELLRIAGWQAGAESVYL-ARERHLIALRAAQAHLARAAEH 421 Query: 393 ASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A N + LD+ AE LRLA L ITG + LL +IFS+FCIGK Sbjct: 422 AEQNAQ--ALDLFAEELRLAQERLNSITGEFTSDDLLGVIFSRFCIGK 467 >gi|303240051|ref|ZP_07326572.1| tRNA modification GTPase TrmE [Acetivibrio cellulolyticus CD2] gi|302592320|gb|EFL62047.1| tRNA modification GTPase TrmE [Acetivibrio cellulolyticus CD2] Length = 460 Score = 223 bits (567), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 160/471 (33%), Positives = 259/471 (54%), Gaps = 42/471 (8%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD- 57 M + ++TI A+ST I IIRLSG F++ E I + KK F + + +G +D Sbjct: 1 MLYNEDTITAISTPHGNGGIGIIRLSGERAFEISEGIFQGKKDFDKVKTHTINYGKIIDS 60 Query: 58 --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 G +LD+ L+ P +FT ED E + HGG V+ ILE + K RLA PGEF++ Sbjct: 61 STGEVLDEVLISKMCKPNTFTREDVVEINCHGGTVVLKNILELILK-KGARLAEPGEFTK 119 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG+IDL +AE++ DLI+++T + +++ + G+LS + KL + + IE Sbjct: 120 RAFLNGRIDLSQAEAVIDLINAKTNESSKAAVDQLEGKLSVKLKEARSKLIELIAHIEVT 179 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +D+ E D++ + +++ +I +K +SS I + G IIR G VI+G N GKSSL Sbjct: 180 VDYPEH-DIEEITGQKIYTEIKDIKEKLSSIIEGFEKGRIIREGINAVIVGRPNVGKSSL 238 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N L K AIVTDIPGTTRD++ ++L G V+I DTAGIRET+D+VEK G+++T E Sbjct: 239 LNELTGKSRAIVTDIPGTTRDIIEDYINLNGVPVRIIDTAGIRETEDVVEKIGVEKTHKE 298 Query: 296 VENADLILLLKE------------------------INSKKEISFPKNIDFIF-IGTKSD 330 V++ADLI+++ + +N +S K +D +G K+ Sbjct: 299 VDSADLIIMMIDADQGVNQEDIDILNKIKEKKAIIILNKIDMVSEDKILDIENKLGNKNV 358 Query: 331 LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL 390 + + E+ ++ G + EL K + ++N+ + ++ RH + + + + Sbjct: 359 IRMSLKEDVG---TADLGNAVVELFMKGEVSINNEV------LITNIRHKNLIDKAIESI 409 Query: 391 EMA-SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + A +E LD+I ++ ++ LG+ITG E ++ IFS+FC+GK Sbjct: 410 DFAIGAHESGMPLDMITIDIVNSAQYLGEITGESVSEDVMHEIFSRFCLGK 460 >gi|168334919|ref|ZP_02693039.1| tRNA modification GTPase TrmE [Epulopiscium sp. 'N.t. morphotype B'] Length = 443 Score = 223 bits (567), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 149/444 (33%), Positives = 248/444 (55%), Gaps = 13/444 (2%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-DGRILDKG 64 +TI A+ST I +IR+SG S + I K + ++ Y + + DG I+D+ Sbjct: 4 DTIAAISTPVGQGGIGVIRVSGSSAISIVNKIFTKNLNNKKSHTIHYGYIVSDGLIIDEV 63 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 L+++ +P++FT ED E + HGG V+N +LE L + RLA GEF++RAF NG+ID Sbjct: 64 LVMLMKAPKTFTREDIVEVNCHGGYVVLNRVLE-LLLVNGARLATAGEFTKRAFLNGRID 122 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L + E++ D+IS++T + + + G LS ++ + L I + IE +D+ E ++ Sbjct: 123 LSQVEAIMDIISAKTNLSLAQATSQLMGNLSKNIKKYQNILLEIIARIEVSIDYPEYDEA 182 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + S DI L D+ + + G+IIR G + I+G N GKSSL NAL ++D Sbjct: 183 E-LISDGFEEDITRLIADLKAILETAATGKIIREGAVVTIVGRPNVGKSSLLNALLEEDK 241 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIVT+I GTTRD+++ +EG + DTAGIR+T D VE+ G++R+ +E +DL+++ Sbjct: 242 AIVTNIAGTTRDIVSEHFSVEGVPFILQDTAGIRDTADAVERIGVERSKEAIEKSDLVIM 301 Query: 305 LKEINSKKEI------SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKI 358 L + K I + KN + +F+ K D Y+++ IS+ TGEG++EL + Sbjct: 302 LLDATEKISIEEVDLMTMLKNRNTLFVVNKIDCVDKYSDDDKIFISATTGEGIDELKAAM 361 Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG--LDIIAENLRLASVSL 416 K+ + + ++ S+ R LS + LE + + G +D +A +L+ A L Sbjct: 362 KAAVVQNL-TMGTAVISNIRQKTALSCAIEALEKVE-DAINAGFSVDFLAIDLQDAYSHL 419 Query: 417 GKITGCVDVEQLLDIIFSKFCIGK 440 G I G E++++ +F +FC+GK Sbjct: 420 GMIIGEEVKEEIINGLFERFCLGK 443 >gi|126701303|ref|YP_001090200.1| tRNA modification GTPase TrmE [Clostridium difficile 630] gi|255102894|ref|ZP_05331871.1| tRNA modification GTPase TrmE [Clostridium difficile QCD-63q42] gi|255308714|ref|ZP_05352885.1| tRNA modification GTPase TrmE [Clostridium difficile ATCC 43255] gi|123362962|sp|Q181S7|MNME_CLOD6 RecName: Full=tRNA modification GTPase mnmE gi|115252740|emb|CAJ70585.1| transfer RNA modification GTPase MnmE [Clostridium difficile] Length = 459 Score = 223 bits (567), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 165/457 (36%), Positives = 252/457 (55%), Gaps = 24/457 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK----KKKPFPRKASLRYFFGLDGR-I 60 +TI A++T I I+R+SG +V E I K K K +L Y +D I Sbjct: 5 DTIAAIATAPGEGGIGILRISGEKALKVAEEIFKSMSGKSIEEYNKRTLIYGNIVDNENI 64 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+ LL P S+TGED E + HGG V ILE L ++RLA GEF++RAF N Sbjct: 65 IDEVLLAYMKGPNSYTGEDVIEINCHGGFISVKKILE-LILSKDVRLAEAGEFTKRAFLN 123 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G+IDL +AE++ D+I ++T++ ++ + G LS + DK+T I + +E +D+ E Sbjct: 124 GRIDLSQAEAVIDVIKAKTDIAHEVAQNQLEGSLSKKIRELRDKVTEILAHVEVAIDYPE 183 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E D+++ + + + LK DI + G+I+R G K VI+G N GKSSL N++ Sbjct: 184 E-DIEHITYQTLKEKTDELKKDIKKLYDTAESGKILREGLKTVIVGKPNVGKSSLLNSIL 242 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDIPGTTRDV+ ++++G +KI DTAGIR+TDDIVEK G++++ +AD Sbjct: 243 GENRAIVTDIPGTTRDVIEEFVNIKGIPLKIVDTAGIRDTDDIVEKIGVEKSKESFTSAD 302 Query: 301 LILLLKEIN---SKKEISF---PKNIDFIFIGTKSDLYSTYTEE----YDH-----LISS 345 LI+++ + + S+++I K+ I + K+DL EE Y IS+ Sbjct: 303 LIVMVLDASRKLSEEDIEILEKLKDKQTIVLLNKNDLKQEIEEEKILKYVENNSIIKISA 362 Query: 346 FTGEGLEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLD 403 EG+EEL +KI+S++ K + ++ RH LS+ + A + E+ D Sbjct: 363 LQQEGIEELQDKIESMVYKGSIKNNSSLVVTNSRHKDALSKAYKSATDALIALEQSMPFD 422 Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + +L+ LG I G E LLD IF FCIGK Sbjct: 423 FVEVDLKNIWDYLGYINGDTVTEDLLDNIFHNFCIGK 459 >gi|186684424|ref|YP_001867620.1| tRNA modification GTPase TrmE [Nostoc punctiforme PCC 73102] gi|186466876|gb|ACC82677.1| tRNA modification GTPase TrmE [Nostoc punctiforme PCC 73102] Length = 464 Score = 223 bits (567), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 152/461 (32%), Positives = 241/461 (52%), Gaps = 33/461 (7%) Query: 7 TIFAVSTGALPS--AISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL-----D 57 TI A++T +P ++ I+R+SG + + F ++ + S + +G Sbjct: 10 TIAAIATAVVPQQGSVGIVRVSGSEAMALAQTLFHAPGRQVWE---SHQILYGYIRHPQT 66 Query: 58 GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 +++D+ LL++ +P S+T ED EFH HGGI V +L+ L RLA PGEF+ RA Sbjct: 67 QQLVDEALLLIMKAPRSYTREDVVEFHCHGGIMAVQQVLQ-LCLENGARLAQPGEFTLRA 125 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NG++DL +AE +ADL+ +++ + ++ G+ G+L+ Q I + IEA +D Sbjct: 126 FLNGRLDLTQAEGIADLVGAKSPQAAQTALAGLQGKLAHSIRQLRANCLDILAEIEARID 185 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 F EED+ K ++++I + +I+ ++ GE++R G K+ I+G N GKSSL N Sbjct: 186 F--EEDLPPLDDKAIISEIEKIAAEITRLLATKDKGELLRTGLKVAIVGRPNVGKSSLLN 243 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 A ++ D AIVTD+PGTTRDV+ L + G V++ DTAGIRET D VEK G++R+ Sbjct: 244 AWSRSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETTDQVEKIGVERSRRAAN 303 Query: 298 NADLILLL---------------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL 342 ADL+LL +++ + I ID + + L S + Sbjct: 304 AADLVLLTIDASAGWTEGDREIYEQVQHRPLILVINKIDLVEERQRKTLQSQIPNPNSKI 363 Query: 343 ISSFT-GEGLEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKD 399 ++ +G++ L I I+ + K + + ++R L+Q LE + Sbjct: 364 ATAAAQNQGIDALEVAILEIVKAEKIQAADMDLAINQRQAAALTQAKISLEQVQTTIVQH 423 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LD +LR A +LG ITG E +LD IFSKFCIGK Sbjct: 424 LPLDFWTIDLRGAIQALGAITGEEVTESVLDRIFSKFCIGK 464 >gi|270292694|ref|ZP_06198905.1| thiophene and furan oxidation protein ThdF [Streptococcus sp. M143] gi|270278673|gb|EFA24519.1| thiophene and furan oxidation protein ThdF [Streptococcus sp. M143] Length = 475 Score = 223 bits (567), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 152/462 (32%), Positives = 265/462 (57%), Gaps = 28/462 (6%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKAS--LRYFFGLD- 57 + E +TI A+ST AI I+RLSG F + + I K K + AS L Y +D Sbjct: 20 ITREFDTIVAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKD-LSKVASHTLNYGHIVDP 78 Query: 58 --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 G+++D+ ++ SP++FT ED E + HGGIAV N IL+ LA RLA PGEF++ Sbjct: 79 QTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 137 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG++DL +AE++ D+I ++T+ ++++ + G LS L ++ + + +E + Sbjct: 138 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 197 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +D+ E +DV+ ++ V + + +++ + + G+I+R G I+G N GKSSL Sbjct: 198 IDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPNVGKSSL 257 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N L ++D AIVTDI GTTRDV+ +++ G +K+ DTAGIRETDDIVE+ G++R+ Sbjct: 258 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGVERSKKA 317 Query: 296 VENADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDL-YSTYTEEYDH---LI 343 ++ ADL+LL+ +N+ ++++ ++ + I + K+DL + T E I Sbjct: 318 LKEADLVLLV--LNASEQLTAQDRQLLEISQDTNRIILLNKTDLPEAIETSELPEDVIRI 375 Query: 344 SSFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DC 400 S + ++++ +I + + + + S+ RH+ + + V L+ ++NE + Sbjct: 376 SVLKNQNIDKIEERINDLFFENAGLVEQDATYLSNARHISLIKKAVESLQ--AVNEGLEL 433 Query: 401 GL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G+ D++ +L LG+ITG ++L+ +FS+FC+GK Sbjct: 434 GMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 475 >gi|325288104|ref|YP_004263894.1| tRNA modification GTPase mnmE [Cellulophaga lytica DSM 7489] gi|324323558|gb|ADY31023.1| tRNA modification GTPase mnmE [Cellulophaga lytica DSM 7489] Length = 478 Score = 223 bits (567), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 158/462 (34%), Positives = 254/462 (54%), Gaps = 29/462 (6%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVC--EFICKKKKPFPRKASLRYFFG--LDG-R 59 ++TI A++T + AI++IRLSGP + +F + K ++ + G +DG + Sbjct: 20 QDTIVALATPSGAGAIAVIRLSGPDAITLANAKFKSVRNKDLTKQKTHTIHLGHIVDGTK 79 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 + D+ L+ +F P S+TGE+ E HG + + +L R+A+ GEF+ RAF Sbjct: 80 VYDEVLVSLFKGPNSYTGENVIEISCHGSQYIQQ-QIIQLFLRNGCRMADAGEFTLRAFL 138 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NGK+DL +AE++ADLI+S+ E +++M+ M G SS + ++L + S IE +LDF+ Sbjct: 139 NGKLDLSQAEAVADLIASDNEASHQIAMQQMRGGFSSEIKKLREELLNFASLIELELDFA 198 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 EE DV+ + + + ++ + I +G +++NG + I+G N GKS+L NA Sbjct: 199 EE-DVEFADRTQFITLLSRIQEVLKRLIDSFAVGNVLKNGIPVAIVGEPNVGKSTLLNAF 257 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 +D AIV+DI GTTRD + ++ + G + DTAGIRET D+VE GIK+TF ++E A Sbjct: 258 LNEDRAIVSDIAGTTRDTIEDEIAIGGIGFRFIDTAGIRETTDVVESIGIKKTFEKIEQA 317 Query: 300 DLILLLKEINS--------KKEISFPKNI----DFIFIGTKSDLYSTYTEEYDH------ 341 ++L L + K EI KN + I K DLY+ E Sbjct: 318 QVVLYLSPLTPAIENLESIKVEIERIKNQFPLKTLVVITNKKDLYTPEQIETIEAEIPST 377 Query: 342 -LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC 400 IS+ TG+G+E L NK+ ++ + +I ++ RH L +++ +E L D Sbjct: 378 LFISAKTGDGVETLKNKLLEFVNTGALRNNETIVTNTRHFDALLKSLEGIERVQLG-MDG 436 Query: 401 GL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G+ D++A +L+ A LG+ITG V ++LL IF+ FCIGK Sbjct: 437 GISGDLLAIDLKDALYHLGEITGQVSNDELLGNIFANFCIGK 478 >gi|242372605|ref|ZP_04818179.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis M23864:W1] gi|242349660|gb|EES41261.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis M23864:W1] Length = 459 Score = 223 bits (567), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 150/459 (32%), Positives = 253/459 (55%), Gaps = 27/459 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPR--KASLRYFFGLD---GRI 60 +TI ++ST AI I+RLSGP ++ + + K KK ++ Y +D Sbjct: 4 DTITSISTPMGEGAIGIVRLSGPQAIEIGDTLYKGKKKLAEVDTHTINYGHIVDPETNET 63 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +++ ++ V +P++FT ED E + HGGI +N ILE L R+A PGE+++RAF N Sbjct: 64 VEEVMISVLRAPKTFTKEDIIEINCHGGILTINRILE-LTMTYGARMAEPGEYTKRAFLN 122 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G+IDL +AE++ D I S+T+ +++M + G LS L + I + +E ++D+ E Sbjct: 123 GRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKGQRQSILEILAQVEVNIDYPE 182 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 +DV++ +++ +L +K +I+ + G G+I+R G VI+G N GKSS+ N L Sbjct: 183 YDDVEDATTEFLLEQSKNIKEEINRLLETGTQGKIMREGLSTVIVGRPNVGKSSMLNNLI 242 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 + + AIVT++ GTTRDVL +++ G +++ DTAGIR+T+DIVEK G++R+ + AD Sbjct: 243 QDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDIVEKIGVERSRKALSEAD 302 Query: 301 LILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTY-TEEYDHLI-------- 343 LIL + +N+ + ++ KN D I I K+DL E +I Sbjct: 303 LILFV--LNNNEPLTEDDQTLYEVIKNEDVIVIINKTDLEQRLDMNEVKEMIGDMPLIQT 360 Query: 344 SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCG 401 S EG++EL +I+ + + + + S+ RH+ L Q ++ A E Sbjct: 361 SMLKQEGIDELEIQIRDLFFGGEVQNQDMTYVSNSRHISLLKQARHSIQDAIDAAESGVP 420 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+I G ++L+D +FS+FC+GK Sbjct: 421 MDMVQIDLTRTWEILGEIIGESASDELIDQLFSQFCLGK 459 >gi|319938848|ref|ZP_08013212.1| tRNA modification GTPase mnmE [Streptococcus anginosus 1_2_62CV] gi|319811898|gb|EFW08164.1| tRNA modification GTPase mnmE [Streptococcus anginosus 1_2_62CV] Length = 457 Score = 223 bits (567), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 155/466 (33%), Positives = 258/466 (55%), Gaps = 36/466 (7%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLD-- 57 + E +TI A+ST AI I+RLSG F + + I K K + +L Y +D Sbjct: 2 ITKEFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKDLSTVASHTLNYGHIIDPE 61 Query: 58 -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 ILD+ ++ SP++FT ED E + HGGIAV N IL+ LA R+A PGEF++R Sbjct: 62 KNEILDEVMIGAMRSPKTFTREDVIEINTHGGIAVTNEILQ-LAIREGARMAEPGEFTKR 120 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NG++DL +AE++ D+I ++T+ ++++ + G LS L ++ + + +E ++ Sbjct: 121 AFLNGRVDLTQAEAIMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVNI 180 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D+ E +DV+ ++K + + ++ + + G+I+R G I+G N GKSSL Sbjct: 181 DYPEYDDVEEMTTKLLREKTAEFEKLLTQLLKTARRGKILREGISTAIIGRPNVGKSSLL 240 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N L ++D AIVTDI GTTRDV+ +++ G +K+ DTAGIR+TDDIVE+ G++R+ + Sbjct: 241 NNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRDTDDIVEQIGVERSKKAL 300 Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTG-- 348 ++ADL+LL+ + +K + ++ + I + K+DL E D L F Sbjct: 301 QDADLVLLVLNASEPLTEQDRKLLEISQDTNRILLLNKTDLEEKI--EVDKLPDDFIKIS 358 Query: 349 -------EGLEELINKI----KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE 397 + +EE IN++ I+ L S+ RH+ + + V L+ ++NE Sbjct: 359 VLQNQNIDKIEERINQLFFENAGIIEQDATYL-----SNARHISLIEKAVESLQ--AVNE 411 Query: 398 K-DCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D G+ D++ +L LG+ITG ++L+ +FS+FC+GK Sbjct: 412 GLDLGMPVDLVQVDLTRTWEILGEITGDAAPDELISQLFSQFCLGK 457 >gi|259048142|ref|ZP_05738543.1| tRNA modification GTPase TrmE [Granulicatella adiacens ATCC 49175] gi|259035203|gb|EEW36458.1| tRNA modification GTPase TrmE [Granulicatella adiacens ATCC 49175] Length = 462 Score = 223 bits (567), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 150/466 (32%), Positives = 255/466 (54%), Gaps = 30/466 (6%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFG---- 55 M E +TI A+ST AI I+R+SG ++ + + + K+K + S +G Sbjct: 1 MQTEFDTIAAISTAPGEGAIGIVRISGEDAIRIADEVYRLKEKRLNEQPSHTIHYGHIVD 60 Query: 56 -LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114 + ++D+ ++ V +P++FT ED E + HGGI +N IL+ L RLA PGEF+ Sbjct: 61 PKNDEVIDEVMVTVLRAPKTFTREDVVEINCHGGIVAINRILQ-LVLRRGARLAEPGEFT 119 Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174 +RAF NG+IDL +AE++ DLI ++T+ +++M + GELS L ++ + + +E Sbjct: 120 KRAFLNGRIDLSQAEAVMDLIRAKTDKSMQMAMRQLDGELSKLIQNLRQEILNTLAQVEV 179 Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234 ++D+ E +DV+ + + + + I + ++ G+I+R+G K I+G N GKSS Sbjct: 180 NIDYPEYDDVEEMTLQLLREKTQQVSQGIRALLNTASQGKILRDGLKAAIVGRPNVGKSS 239 Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294 L N L +++ AIVTDI GTTRD + +++ G +++ DTAGIRETDD+VE+ G++R+ Sbjct: 240 LLNVLLREEKAIVTDIAGTTRDTIEEYVNVRGVPLQLIDTAGIRETDDVVERIGVERSRK 299 Query: 295 EVENADLILLLKEINSKKEIS------FPKNIDF--IFIGTKSDLYSTY---------TE 337 + AD +LL+ +N +E+ + DF I + K+DL + T+ Sbjct: 300 ALNEADFVLLI--LNQSEELRDEDLRLLEQTKDFKRIILLNKTDLPTKIDMDKVKEFATD 357 Query: 338 EYDHLISSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396 S EG+++L KI + + + S+ RH+ L + + L+ + N Sbjct: 358 SEIVTTSMLKKEGIDQLEEKIADYFFQGQMNERDATYLSNTRHIALLEKAEQALQEVA-N 416 Query: 397 EKDCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D G+ D+I + A LG+ITG ++LL +FS+FC+GK Sbjct: 417 GVDMGMPVDLIQIDFTRAWDLLGEITGDTVQDELLTQLFSQFCLGK 462 >gi|15616624|ref|NP_244930.1| tRNA modification GTPase TrmE [Bacillus halodurans C-125] gi|14195295|sp|Q9RCA7|MNME_BACHD RecName: Full=tRNA modification GTPase mnmE gi|5672642|dbj|BAA82680.1| 77%-identity [Bacillus halodurans] gi|10176687|dbj|BAB07781.1| thiophen and furan oxidation [Bacillus halodurans C-125] Length = 458 Score = 223 bits (567), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 155/459 (33%), Positives = 253/459 (55%), Gaps = 24/459 (5%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LDGR-- 59 E +TI A+ST AI I+RLSG Q+ + + + KKP S +G +D + Sbjct: 2 EFDTIAAISTALGEGAIGIVRLSGDEAVQLADRVYRGKKPLQEVPSHTIVYGHIVDPKTD 61 Query: 60 -ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 I+D+ ++ V +P +FT ED E + HGG+ VN +L+ L RLA PGEF++RAF Sbjct: 62 EIIDEVMVSVLRAPRTFTREDVIEINCHGGLVSVNRVLQ-LVLNHGARLAEPGEFTKRAF 120 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG+IDL +AE + DLI ++T+ ++++ + G LS+ L + +E ++D+ Sbjct: 121 LNGRIDLSQAEGVIDLIRAKTDRAMNVALKQVEGRLSTKISSLRQALLETVAHVEVNIDY 180 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E D + + + + F++ +I + + G+I+R G VI+G N GKSSL N+ Sbjct: 181 PEY-DAETMTLDMLKDRAQFVRKEIDKLLMTAQQGKILREGLSTVIIGRPNVGKSSLLNS 239 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L ++ AIVTDIPGTTRDV+ +++ G +++ DTAGIRET+DIVE+ G++R+ ++ Sbjct: 240 LVHENKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDIVERIGVERSREVLKE 299 Query: 299 ADLILLL----KEINSKKEISFP--KNIDFIFIGTKSDLYS----TYTEEYDH-----LI 343 A+LILL+ +E++ + E F ++ I I K+D+ T E Sbjct: 300 AELILLVLNFGEELSKEDEALFEAISGMEAIVIVNKTDVEQKIDLTRVRELAAGRPVITT 359 Query: 344 SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCG 401 S +G++EL I S+ + + + S+ RH+ L Q R +E A E D Sbjct: 360 SIVQDQGIDELEAAIASLFFESGIESGDVTYVSNSRHIALLEQAKRAVEDALEAIEMDVP 419 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ ++ A LG+I G E L+D +FS+FC+GK Sbjct: 420 IDMVQIDITRAWELLGEIIGDSVHESLIDQLFSQFCLGK 458 >gi|322376714|ref|ZP_08051207.1| tRNA modification GTPase TrmE [Streptococcus sp. M334] gi|321282521|gb|EFX59528.1| tRNA modification GTPase TrmE [Streptococcus sp. M334] Length = 457 Score = 223 bits (567), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 152/460 (33%), Positives = 263/460 (57%), Gaps = 24/460 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKAS--LRYFFGLD- 57 + E +TI A+ST AI I+RLSG F + + I K K + AS L Y +D Sbjct: 2 ITREFDTIAAISTPLGEGAIGIVRLSGTESFAIAQKIFKGKD-LSKVASHTLNYGHIVDP 60 Query: 58 --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 G+++D+ ++ SP++FT ED E + HGGIAV N IL+ LA RLA PGEF++ Sbjct: 61 QTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 119 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG++DL +AE++ D+I ++T+ ++++ + G LS L ++ + + +E + Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 179 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +D+ E +DV+ ++ V + + +++ + + G+I+R G I+G N GKSSL Sbjct: 180 IDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPNVGKSSL 239 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N L ++D AIVTDI GTTRDV+ +++ G +K+ DTAGIRETDDIVE+ G++R+ Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGVERSKKA 299 Query: 296 VENADLILLLKEINS------KKEISFPKNIDFIFIGTKSDL-YSTYTEEYDH---LISS 345 ++ ADL+LL+ + ++ + + + I + K+DL + TEE IS Sbjct: 300 LKEADLVLLVLNASEPLTAQDRQLLEISQETNRIILLNKTDLPEAIETEELPEDVIRISV 359 Query: 346 FTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGL 402 + ++++ +I ++ + + + S+ RH+ + + V L+ ++NE + G+ Sbjct: 360 LKNQNIDKIEERINNLFFENAGLVEQDATYLSNARHISLIEKAVESLQ--AVNEGLELGM 417 Query: 403 --DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D++ +L LG+ITG ++L+ +FS+FC+GK Sbjct: 418 PVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457 >gi|189502543|ref|YP_001958260.1| hypothetical protein Aasi_1201 [Candidatus Amoebophilus asiaticus 5a2] gi|226704778|sp|B3ETH9|MNME_AMOA5 RecName: Full=tRNA modification GTPase mnmE gi|189497984|gb|ACE06531.1| hypothetical protein Aasi_1201 [Candidatus Amoebophilus asiaticus 5a2] Length = 455 Score = 223 bits (567), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 156/460 (33%), Positives = 256/460 (55%), Gaps = 25/460 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG---LD 57 M H++E I A++T A SAI++IRLSG + + + K K ++ S FG Sbjct: 1 MLHQQEPIIALATPAGKSAIAVIRLSGQNVISIVNQVFKGKD-LNQQPSHTIHFGTINYQ 59 Query: 58 GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 G ++D+ L+ +F +P SFT EDS E HG ++ I++ ++ +RLA PGEF++RA Sbjct: 60 GEMIDEVLIALFKAPRSFTQEDSVEISCHGSSYIIQKIMQLFMEL-GIRLAKPGEFTQRA 118 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NG+ DL++AE++ADLI+++T + + +++ M G S+ +KL H+ + +E +LD Sbjct: 119 FLNGRFDLIQAEAVADLIAADTAIAHKTALQQMRGGFSTQLQALREKLIHVGALLELELD 178 Query: 178 FSEEEDVQNFSSKEVLNDILF-LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 F+ EEDV F+ + +L ++ L I I LG +I+NG I I+G N GKS+L Sbjct: 179 FA-EEDVA-FADRAMLESLIQELLTIIGKLIQSFSLGNVIKNGLPIAIVGKPNVGKSTLL 236 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLE 295 NAL +++ AIV+ IPGTTRD + ++++ G + DTAG+RE T D +E GI RT Sbjct: 237 NALLQEERAIVSPIPGTTRDFIEAEINIGGIHCRFIDTAGLREHTTDTIESIGIARTKER 296 Query: 296 VENADLILLLKEINSKKEISFPKNID--------FIFIGTK-----SDLYSTYTEEYDHL 342 ++ A LI+ + +++ + + I+ +I +G K DL ++E Sbjct: 297 MQQAGLIIYVFDLSDESLATIQNAIEGISELGIPYIKVGNKLDAAQPDLLKALSQEDFVF 356 Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402 IS+ + L +L +I + +I + RH L ++ L +A + GL Sbjct: 357 ISTAKKQHLGQLEARILELFQLDQLDNSDTIVVNTRHYESLVKSQNAL-LAVVEGIINGL 415 Query: 403 --DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++ +L+ LG+ITG + E LLD +FSKFCIGK Sbjct: 416 SNELLMIDLKQTLYYLGEITGEITTEDLLDDLFSKFCIGK 455 >gi|253755917|ref|YP_003029057.1| tRNA modification GTPase TrmE [Streptococcus suis BM407] gi|251818381|emb|CAZ56209.1| tRNA modification GTPase TrmE [Streptococcus suis BM407] Length = 457 Score = 223 bits (567), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 153/460 (33%), Positives = 253/460 (55%), Gaps = 24/460 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLD- 57 + E +TI A+ST AI I+RLSG F + + K K P SL Y +D Sbjct: 2 ITKEFDTITAISTPLGEGAIGIVRLSGTDAFAIASTVFKGKDLATVPSH-SLNYGHVIDP 60 Query: 58 --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 G++LD+ ++ SP++FT ED E + HGGIAV N IL+ L + R+A PGEF++ Sbjct: 61 ATGQVLDEVMIGAMRSPKTFTREDVIEINTHGGIAVTNEILQLLIRQ-GARMAEPGEFTK 119 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG++DL +AE++ D+I ++T+ ++ + G LS L ++ + + +E + Sbjct: 120 RAFLNGRVDLTQAEAVMDVIRAKTDKAMHNAVRQLDGSLSQLINDTRQEILNTLAQVEVN 179 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +D+ E +DV+ +++ V L + + + + + G+I+R G I+G N GKSSL Sbjct: 180 IDYPEYDDVEEATTELVREKTLQFQALLENLLRTARRGKILREGIATAIIGRPNVGKSSL 239 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N L +++ AIVTDI GTTRDV+ ++++G +K+ DTAGIRETDDIVEK G++R+ Sbjct: 240 LNNLLREEKAIVTDIAGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDIVEKIGVERSKKA 299 Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------I 343 +E ADLILL+ + + ++ + I + K+DL E D L I Sbjct: 300 LEEADLILLVLNASEPLTEQDRNLLAISDMANRIVLLNKTDLEEQI--EVDQLPEDVIRI 357 Query: 344 SSFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DC 400 S + ++++ KI + + + + S+ RH+ + Q V+ L + K Sbjct: 358 SVLQNQNIDQIEEKINQLFFENAGLVEQDATYLSNSRHISLIEQAVQSLHAVNDGLKVGM 417 Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+ITG ++L+ +FS+FC+GK Sbjct: 418 PVDLLQVDLTRCWQILGEITGDAAPDELITQLFSQFCLGK 457 >gi|225868377|ref|YP_002744325.1| tRNA modification GTPase TrmE [Streptococcus equi subsp. zooepidemicus] gi|225701653|emb|CAW98957.1| tRNA modification GTPase TrmE [Streptococcus equi subsp. zooepidemicus] Length = 458 Score = 223 bits (567), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 152/462 (32%), Positives = 256/462 (55%), Gaps = 28/462 (6%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55 + E +TI A+ST AI I+RLSG + + I K K AS +G Sbjct: 3 ITKEFDTIAAISTPLGEGAIGIVRLSGTKALDIAKSIFKGKD-LTTVASHTLNYGHIIRP 61 Query: 56 LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 G ++D+ ++ V +P++FT ED E + HGGIAV N IL+ L K R+A PGEF++ Sbjct: 62 STGEVIDEVMVSVMLAPKTFTREDVIEINTHGGIAVTNDILQLLIKQ-GARMAEPGEFTK 120 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG+IDL +AE++ DLI ++T+ ++++ + G LS L ++ + + +E + Sbjct: 121 RAFLNGRIDLTQAEAVMDLIRAKTDKAMSIAIKQLDGSLSQLITNTRQEILNTLAQVEVN 180 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +D+ E +DV+ ++ + + + + + K G+I+R G I+G N GKSSL Sbjct: 181 IDYPEYDDVEEMTTALLRDKTQEFQALLEQLLRTAKRGKILREGLSTAIIGRPNVGKSSL 240 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N L ++D AIVTDI GTTRDV+ ++++G +K+ DTAGIRETDD+VE+ G++R+ Sbjct: 241 LNTLLREDKAIVTDIAGTTRDVIEEYVNIKGIPLKLVDTAGIRETDDLVEQIGVERSKKA 300 Query: 296 VENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEEYDHL------I 343 ++ ADL+LL+ + K ++ ++ + I + K+DL E D L I Sbjct: 301 LQEADLVLLVLNASEKLTEQDKALLALSQDSNRIILLNKTDLEQVI--EKDQLPEEAIPI 358 Query: 344 SSFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK--- 398 S + ++ + ++I + + + S+ RH+ + Q V+ LE ++NE Sbjct: 359 SVLQNQNIDLIEDRINQLFFDHTGLIEQDATYLSNARHISLIEQAVQSLE--AVNEGLAL 416 Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L A LG+ITG ++L+ +FS+FC+GK Sbjct: 417 GMPVDLLQIDLTRAWEILGEITGDAAPDELITQLFSQFCLGK 458 >gi|322387781|ref|ZP_08061390.1| thiophene and furan oxidation protein ThdF [Streptococcus infantis ATCC 700779] gi|321141648|gb|EFX37144.1| thiophene and furan oxidation protein ThdF [Streptococcus infantis ATCC 700779] Length = 457 Score = 222 bits (566), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 148/460 (32%), Positives = 263/460 (57%), Gaps = 24/460 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55 + E +TI A+ST AI I+RLSG F + + I K K + AS +G Sbjct: 2 ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKD-LSQVASHTLNYGHIVDP 60 Query: 56 LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 L G+++D+ ++ SP++FT ED E + HGGIAV N IL+ LA R+A PGEF++ Sbjct: 61 LTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARMAEPGEFTK 119 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG++DL +AE++ D+I ++T+ ++++ + G LS L ++ + + +E + Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSELINNTRQEILNTLAQVEVN 179 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +D+ E +DV+ ++ V + + +++ + + G+I+R G I+G N GKSSL Sbjct: 180 IDYPEYDDVEEATTAVVREKTMEFEQLLTNLLKTARRGKILREGIATAIIGRPNVGKSSL 239 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N L ++D AIVTDI GTTRDV+ +++ G +K+ DTAGIRETDD+VE+ G++R+ Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDVVEQIGVERSKKA 299 Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTY--TEEYDHL--ISS 345 ++ ADL+LL+ + ++ + ++ + I + K+DL +E D + IS Sbjct: 300 LKEADLVLLVLNASEPLTAQDRQLLEISQDTNRIILLNKTDLPEAIETSELPDDVIRISV 359 Query: 346 FTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGL 402 + ++++ +I ++ + + + S+ RH+ + + V L+ ++NE + G+ Sbjct: 360 LKNQNIDKIEERINNLFFENAGLVEQDATYLSNARHISLIEKAVESLQ--AVNEGLELGM 417 Query: 403 --DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D++ +L LG+ITG ++L+ +FS+FC+GK Sbjct: 418 PVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457 >gi|258648360|ref|ZP_05735829.1| tRNA modification GTPase TrmE [Prevotella tannerae ATCC 51259] gi|260851527|gb|EEX71396.1| tRNA modification GTPase TrmE [Prevotella tannerae ATCC 51259] Length = 442 Score = 222 bits (566), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 154/453 (33%), Positives = 249/453 (54%), Gaps = 30/453 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 ETI A++T A AI I+RLSG + E I + K + + +G ILD+ + Sbjct: 2 ETICAIAT-APGGAIGIVRLSGDDAISLTEKILDRN--LQEKVTYAHILD-NGEILDEVI 57 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + +F P S+TGE++AE HG ++ +E L + A PGEF++RAF N K+DL Sbjct: 58 VTIFRQPHSYTGENTAEISCHGSPYILQRTMELLIAQ-GCKPARPGEFTQRAFLNHKMDL 116 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 AE++ADLI++ ++ Q++++M+ M G S + D+L HI S +E +LDFS+ ED++ Sbjct: 117 SRAEAVADLIAARSKAQQKMAMQQMRGNFSKSLSELRDQLLHITSLLELELDFSDHEDLE 176 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 E++ ++ +SS ++ KLG I++G + I+G +NAGKS+L NAL ++ A Sbjct: 177 FADRSELIALAKTIEEKVSSLLNSFKLGNAIKHGVPVAIVGKTNAGKSTLLNALVGEERA 236 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 +V+DI GTTRD + +++ G L + DTAGIR TDDIVE GI+RTF + AD+IL + Sbjct: 237 LVSDINGTTRDTIEDIVNIGGTLFRFIDTAGIRRTDDIVETMGIERTFQTIAKADIILWV 296 Query: 306 KEINSKKEI------SFPKNID---FIFIGTKSDLY--STYTEEYDHL-ISSFTGEGLEE 353 + K++ ++ D I + K+DL + D + IS+ G+++ Sbjct: 297 IDAQDSKDVLKELEQQMRQHCDSKKLICVFNKTDLQIPQYIPKGIDTVSISAKKNIGMDK 356 Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL------DIIAE 407 L + +K +S I S+ RH L + SL GL + +++ Sbjct: 357 LRDLLK--VSTDIAPAEDVIVSNIRHYEALCEA-----RTSLERVQSGLINHLSGEFVSQ 409 Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +LR SL +I G + + +L+ IFS FC+GK Sbjct: 410 DLRACIQSLSEIVGDITSQSVLNNIFSHFCVGK 442 >gi|154300747|ref|XP_001550788.1| hypothetical protein BC1G_10673 [Botryotinia fuckeliana B05.10] gi|150856421|gb|EDN31613.1| hypothetical protein BC1G_10673 [Botryotinia fuckeliana B05.10] Length = 525 Score = 222 bits (566), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 161/487 (33%), Positives = 248/487 (50%), Gaps = 92/487 (18%) Query: 37 ICKKKK-PFPRKASLRYFFGLDG---RILDK-GLLIVFPSPESFTGEDSAEFHVHGGIAV 91 +C K P PR A++R + ILD L++ FP+P + TGED E HVHGG A Sbjct: 48 LCPSKSIPRPRYAAVRTLYEPANSIPNILDSDALVLYFPAPNTVTGEDVLELHVHGGSAT 107 Query: 92 VNGILEELAKMPN---LRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSME 148 V +L +++ + +R A PGEF+RRAF+N ++DL + E+L+D +S+ETE QRR ++ Sbjct: 108 VKAVLSTISQCTSAAKIRYAEPGEFTRRAFQNDRLDLAQVEALSDTLSAETEQQRRAAVR 167 Query: 149 GMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNF--SSKEVLNDILF----LKND 202 G SG+L Y W ++L + R +EA +DFSE+ Q+F S E+L+++ + Sbjct: 168 GNSGKLGRTYEAWREQLLYARGELEALIDFSED---QHFDESPAELLSNVTAQVETMLEL 224 Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262 I++H S GE+++ G +I +LG NAGKSSL N + ++ +IV+ GTTRD++ + L Sbjct: 225 IAAHESASHRGELLKKGIRIALLGPPNAGKSSLLNQIVGREASIVSQEAGTTRDIVEVGL 284 Query: 263 DLEGYLVKISDTAGIR---------ETDDI---VEKEGIKRTFLEVENADLILLL----- 305 D+ GYL +DTAG+R D I +E+EGI+R + +DLI+ L Sbjct: 285 DIRGYLCTFADTAGLRTQASQIGSGNNDSIIGDIEREGIRRAKSKANESDLIVALASIEW 344 Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365 +I + EI + + + I ++ + + D S T E L ELIN K K Sbjct: 345 SDIRNGWEIRYDQ--ETFEIAARASKFMIVINKSD----SVTPEILSELINDFKESQKGK 398 Query: 366 FKKLPF----------------------------------SIPSHKRHLYHLSQTVRYLE 391 F + P S+P+ L +++ R L Sbjct: 399 FDQYPVPLMSISCKDAQGLTNKGSIGHFVDEMVSVFSNMTSLPTELVDLLGVTERQRQLL 458 Query: 392 MAS-------LNEK------DCGLDII--AENLRLASVSLGKITG---CVDVEQLLDIIF 433 A +NE D DI+ AE+LR A+ L +ITG DVE++L ++F Sbjct: 459 TACSAHLLDFMNEAQEHVDHDQEADIVLAAEHLRSAANCLSRITGRGEAGDVEEVLGVVF 518 Query: 434 SKFCIGK 440 KFC+GK Sbjct: 519 EKFCVGK 525 >gi|258512903|ref|YP_003186337.1| tRNA modification GTPase TrmE [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479629|gb|ACV59948.1| tRNA modification GTPase TrmE [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 465 Score = 222 bits (566), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 148/464 (31%), Positives = 245/464 (52%), Gaps = 31/464 (6%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRK---ASLRYFFGLD-- 57 +++TI A++T +++ I+R+SG V E + + K+ P K +RY +D Sbjct: 7 EQEDTIAAIATAVGEASVGIVRVSGRGARDVGERLVRSKRGLPVKLGERGMRYGQVIDPK 66 Query: 58 -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKM-PNLRLANPGEFSR 115 G ++D+ +++ P P S+TGED E VHGG V +L LA + R+A PGEF++ Sbjct: 67 SGDVIDEAIVLWMPGPHSYTGEDVLELQVHGGTYAVEEVL--LACLEAGARMAEPGEFTK 124 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG+IDL +AE++ DLI ++T +L+ + G +L + + +E Sbjct: 125 RAFLNGRIDLSQAEAVIDLIRAKTAFAGKLAERQVRGRFGEAVRALRRRLLELEAHVEVT 184 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +D+ E DV++ + V++ + +I + I +LG ++R+G I+G N GKSSL Sbjct: 185 IDYPEH-DVEDVACDHVVSVCEGMMGEIDALIRSAELGRVLRDGVATAIVGRPNVGKSSL 243 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 NAL +++ AIVTD+PGTTRDVL ++L G +++ DTAGIRET+D+VE+ G+ R+ Sbjct: 244 LNALVERERAIVTDLPGTTRDVLEEYINLRGIPLRLIDTAGIRETEDVVERIGVARSRQS 303 Query: 296 VENADLILLL---------------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD 340 ++ A+L+LL+ +E + + I +D + E Sbjct: 304 MQEAELVLLVLDGSEPPSPEDEAIARESDGSRRIVVLNKVDRGIHPDAARFADELAPEGA 363 Query: 341 HLISSFTGEGLEEL----INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396 +S+ G GL+ L +NKI+ L+ + KR L + +R A+ Sbjct: 364 VRVSAREGTGLDTLRDAMVNKIRRDLAIDLDASYMANHRQKRLLEEAKEDLRTARDAA-- 421 Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + LD++A L+ A LG+ G E LL+ IFS+FC+GK Sbjct: 422 QAGATLDLVAVALQSAYEKLGETIGEEAGEDLLNEIFSRFCLGK 465 >gi|315222529|ref|ZP_07864418.1| tRNA modification GTPase TrmE [Streptococcus anginosus F0211] gi|315188215|gb|EFU21941.1| tRNA modification GTPase TrmE [Streptococcus anginosus F0211] Length = 457 Score = 222 bits (566), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 151/461 (32%), Positives = 259/461 (56%), Gaps = 26/461 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLD-- 57 + E +TI A+ST AI I+RLSG + F + + I K K + +L Y +D Sbjct: 2 ITKEFDTIAAISTPLGEGAIGIVRLSGTNSFAIAQKIFKGKDLSTVASHTLNYGHIIDPE 61 Query: 58 -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 ILD+ ++ SP++FT ED E + HGGIAV N IL+ LA R+A PGEF++R Sbjct: 62 KNEILDEVMIGAMRSPKTFTREDVIEINTHGGIAVTNEILQ-LAIREGARMAEPGEFTKR 120 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NG++DL +AE++ D+I ++T+ ++++ + G LS L ++ + + +E ++ Sbjct: 121 AFLNGRVDLTQAEAIMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVNI 180 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D+ E +DV+ ++K + + ++ + + G+I+R G I+G N GKSSL Sbjct: 181 DYPEYDDVEEMTTKLLREKTAEFEKLLTQLLKTARRGKILREGISTAIIGRPNVGKSSLL 240 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N L ++D AIVTDI GTTRDV+ +++ G +K+ DTAGIR+TDDIVE+ G++R+ + Sbjct: 241 NNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRDTDDIVEQIGVERSKKAL 300 Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------IS 344 ++ADL+LL+ + +K + ++ + I + K+DL E D L IS Sbjct: 301 QDADLVLLVLNASEPLTEQDRKLLEISQDTNRILLLNKTDLEEKI--EVDQLPDDFIKIS 358 Query: 345 SFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCG 401 + ++++ +I + + + + S+ RH+ + + V L ++NE D G Sbjct: 359 VLQNQNIDKIEERINQLFFENAGIVEQDATYLSNARHISLIEKAVESLH--AVNEGLDLG 416 Query: 402 L--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + D++ +L LG+ITG ++L+ +FS+FC+GK Sbjct: 417 MPVDLVQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457 >gi|315613122|ref|ZP_07888032.1| tRNA modification GTPase TrmE [Streptococcus sanguinis ATCC 49296] gi|315314684|gb|EFU62726.1| tRNA modification GTPase TrmE [Streptococcus sanguinis ATCC 49296] Length = 471 Score = 222 bits (566), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 151/460 (32%), Positives = 265/460 (57%), Gaps = 24/460 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKAS--LRYFFGLD- 57 + E +TI A+ST AI I+RLSG F + + I K K + AS L Y +D Sbjct: 16 ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKD-LSKVASHTLNYGHIIDP 74 Query: 58 --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 G+++D+ ++ V SP++FT ED E + HGGIAV N IL+ LA RLA PGEF++ Sbjct: 75 QTGKVMDEVMVGVMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 133 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG++DL +AE++ D+I ++T+ ++++ + G LS L ++ + + +E + Sbjct: 134 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 193 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +D+ E +DV+ ++ V + + +++ + + G+I+R G I+G N GKSSL Sbjct: 194 IDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPNVGKSSL 253 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N L ++D AIVTDI GTTRDV+ +++ G +K+ DTAGIR+TDDIVE+ G++R+ Sbjct: 254 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRDTDDIVEQIGVERSKKA 313 Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDL-YSTYTEEYDH---LISS 345 ++ ADL+LL+ + ++ + ++ + I + K+DL + T E IS Sbjct: 314 LKEADLVLLVLNASDPLTAQDRQLLEISQDTNRIILLNKTDLPEAIETSELPEDVIRISV 373 Query: 346 FTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGL 402 + ++++ ++I ++ + + + S+ RH+ + + V L+ ++NE + G+ Sbjct: 374 LKNQNIDKIEDRINNLFFENAGLVEQDATYLSNARHISLIEKAVESLQ--AVNEGLELGM 431 Query: 403 --DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D++ +L LG+ITG ++L+ +FS+FC+GK Sbjct: 432 PVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 471 >gi|32490761|ref|NP_871015.1| tRNA modification GTPase TrmE [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|31340464|sp|Q8D3I9|MNME_WIGBR RecName: Full=tRNA modification GTPase mnmE gi|25165967|dbj|BAC24158.1| thdF [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 453 Score = 222 bits (566), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 167/461 (36%), Positives = 252/461 (54%), Gaps = 34/461 (7%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63 +K++I A++T I IIR+SG ++ + I K+ P ++A F+ +G LD+ Sbjct: 3 KKDSIVAIATPPGKGGIGIIRVSGNLSVKIAK-IFLKRLPKEKQAEYIPFYSKNGNTLDQ 61 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 G+ + F SP+S TGED EF HG +N +L+E+ + +RLA PGEF RAF NGKI Sbjct: 62 GIALFFKSPKSLTGEDVLEFQAHGSPVALNFLLQEILSIKGMRLAKPGEFLERAFINGKI 121 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL++AE+++DLI+S + + ++ + G S I + +R IE D+DFSEE Sbjct: 122 DLIQAEAISDLINSCSIQAAKSALISIRGYFSKKINNLILSIKKLRMKIEVDIDFSEE-- 179 Query: 184 VQNFSS------KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 NF+ K L I+ N I ++ G I++ G KIVI+G N+GKSS+FN Sbjct: 180 --NFNKISIECIKHDLEKIILNINKIQCSFNR---GAILKEGSKIVIIGKPNSGKSSIFN 234 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 L+ + AIVT I GTTRD+L + L+ + I DTAG+R+TDD +EK GI R E++ Sbjct: 235 ILSGNNNAIVTSIEGTTRDILHEHIYLDNIPLHIYDTAGLRKTDDKIEKIGILRALKEIK 294 Query: 298 NADLILLLKEINSKK----EISFPK---NI--DFIFIGTKSDLYSTYTE----EYDHLI- 343 +D ILL+ + N K + +PK NI I K DL E + +++I Sbjct: 295 TSDHILLIVDSNIDKSNDINLIWPKFNSNIKNKITIIRNKIDLSKEIPEIKIFKKNNIIS 354 Query: 344 -SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LNEKDC 400 S++TGEG++ LI +K L+ I + RH+ + + + A LN+ + Sbjct: 355 LSAYTGEGVDILIKYLKD-LNCLLLNEEGCILARTRHILEIKKAKNNILNAKKLLNKYNL 413 Query: 401 GLDIIAENLRLASVSLGKITGC-VDVEQLLDIIFSKFCIGK 440 D ++E LR+A L KI G + L+ IFS FCIGK Sbjct: 414 S-DFVSEELRIAQSCLEKILGINNNSNDFLNEIFSNFCIGK 453 >gi|299541770|ref|ZP_07052093.1| tRNA modification GTPase trmE [Lysinibacillus fusiformis ZC1] gi|298725508|gb|EFI66149.1| tRNA modification GTPase trmE [Lysinibacillus fusiformis ZC1] Length = 461 Score = 222 bits (566), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 156/461 (33%), Positives = 255/461 (55%), Gaps = 25/461 (5%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFG--LDGR 59 E +TI A+ST AI+I+RLSG + + I K K K S +G +D + Sbjct: 2 EFDTIAAISTPMGEGAIAIVRLSGDEAVTIADKIFKSPGGKSLTTKDSHTIHYGHLVDPK 61 Query: 60 ---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 ++++ +L + P++FT ED E + HGG+ V +L+ LA RLA PGEF++R Sbjct: 62 TNEVVEEVMLSLMRGPKTFTREDVVEINCHGGLVSVKRVLQ-LALTSGARLAEPGEFTKR 120 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NG+IDL +AE++ DLI ++T+ +++ M G+LS L G L + +E ++ Sbjct: 121 AFLNGRIDLSQAEAVMDLIRAKTDRAMNVALGQMDGKLSRLIGDLRQALLETLAQVEVNI 180 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D+ E +DV+ + ++ ++KN+I + G+I+R G VILG N GKSSL Sbjct: 181 DYPEYDDVEEMTVPVLIEKCTWVKNEIIKLLQTSSQGKILREGLSTVILGRPNVGKSSLL 240 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N+L +++ AIVTDI GTTRD++ +++ G +++ DTAGIRET+DIVE+ G++R+ + Sbjct: 241 NSLVQENKAIVTDIAGTTRDIIEEYVNVRGVPLRLVDTAGIRETEDIVERIGVERSREAL 300 Query: 297 ENADLILLL----KEINSKKEISFP--KNIDFIFIGTKSDLYS----TYTEEY--DHLI- 343 ADLIL + E+ ++ E F + +D+I I K+DL +E +H I Sbjct: 301 RGADLILFVLNYADELTAEDERLFETIEAMDYIVIVNKTDLPQKIDLARVKELAGEHRIV 360 Query: 344 --SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD- 399 S EG+ EL I ++ + + + S+ RH+ L Q +E A +D Sbjct: 361 TTSLLQEEGITELEEAIAALFFEGQIEAGDLTYVSNARHIALLHQAQATVEDAIAAAQDG 420 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ ++ LG+I G E L++ +FS+FC+GK Sbjct: 421 VPVDMVQIDVTRTWEILGEIIGDTVQESLINQLFSQFCLGK 461 >gi|255657633|ref|ZP_05403042.1| tRNA modification GTPase TrmE [Clostridium difficile QCD-23m63] Length = 459 Score = 222 bits (566), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 165/457 (36%), Positives = 253/457 (55%), Gaps = 24/457 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK----KKKPFPRKASLRYFFGLDGR-I 60 +TI A++T I I+R+SG +V E I K K K +L Y +D I Sbjct: 5 DTIAAIATAPGEGGIGILRISGERALKVAEEIFKSMSGKSIEEYNKRTLIYGNIVDKENI 64 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+ LL P S+TGED E + HGG V ILE L ++RLA GEF++RAF N Sbjct: 65 IDEVLLAYMKGPNSYTGEDVIEINCHGGFISVKKILE-LILSKDVRLAEAGEFTKRAFLN 123 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G+IDL +AE++ D+I ++T++ ++ + G LS + DK+T I + +E +D+ E Sbjct: 124 GRIDLSQAEAVIDVIKAKTDIAHEVAQNQLEGSLSKKIRELRDKVTEILAHVEVAIDYPE 183 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E D+++ + + + + LK +I + G+I+R G K VI+G N GKSSL N++ Sbjct: 184 E-DIEHITYQTLKDKTDELKKEIKKLYDTAESGKILREGLKTVIVGKPNVGKSSLLNSIL 242 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDIPGTTRDV+ ++++G +KI DTAGIR+TDDIVEK G++R+ +AD Sbjct: 243 GENRAIVTDIPGTTRDVIEEFVNIKGIPLKIVDTAGIRDTDDIVEKIGVERSKESFTSAD 302 Query: 301 LILLLKEIN---SKKEISF---PKNIDFIFIGTKSDLYSTYTEE----YDH-----LISS 345 LI+++ + + S+++I K+ I + K+DL EE Y IS+ Sbjct: 303 LIVMVLDASRKLSEEDIEILEKLKDKQTIVLLNKNDLKQEIEEEKILKYVENNSIIKISA 362 Query: 346 FTGEGLEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLD 403 EG+EEL +KI+S++ K + ++ RH LS+ + A + E+ D Sbjct: 363 LQQEGIEELQDKIESMVYKGSIKNNSSLVVTNSRHKDALSKAYKSATDALIALEQSMPFD 422 Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + +L+ LG I G E LLD IF FCIGK Sbjct: 423 FVEVDLKNIWDYLGYINGDTVTEDLLDNIFHNFCIGK 459 >gi|238028966|ref|YP_002913197.1| tRNA modification GTPase TrmE [Burkholderia glumae BGR1] gi|237878160|gb|ACR30493.1| TRNA modification GTPase TrmE [Burkholderia glumae BGR1] Length = 472 Score = 222 bits (566), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 155/475 (32%), Positives = 243/475 (51%), Gaps = 39/475 (8%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLS----GPSCFQ-VCEFICKKKKPFPRKASLRYFFG 55 + + + I A++T I ++R+S G S + + + +C + R AS F Sbjct: 2 LTTDSDPIVAIATAPGRGGIGVVRISFGRAGASAAEALMQAVCGQLLA-ARHASYVPFLD 60 Query: 56 LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGE 112 G LD+G+ + FP+P S+TGE E HGG V+ +L+ + + +RLA PGE Sbjct: 61 GAGEALDRGIALNFPAPNSYTGEHVLELQGHGGPIVLQLLLQRCLDAGRGHGVRLAEPGE 120 Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172 F+RRAF N K+DL +AE++ADLI + TE R + + G S +D + +R + Sbjct: 121 FTRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRDVHALVDDVIGLRMLV 180 Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232 EA LDF EEE + + + + ++ ++ + + G ++R G +V+ G N GK Sbjct: 181 EATLDFPEEE-IDFLEAADARGKLARIRERLARVLGDARQGALLREGLSVVLAGQPNVGK 239 Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292 SSL NALA ++AIVT I GTTRD + + +EG + I DTAG+RET+D VEK GI RT Sbjct: 240 SSLLNALAGAELAIVTPIAGTTRDKVAQTIQIEGIPLHIVDTAGLRETEDEVEKIGIART 299 Query: 293 FLEVENADLILLLKEIN-----SKKEIS--FPKNIDFIFIGTKSDLYSTYTEEYDHL--- 342 + E+E AD++L L + + I+ FP + + + K+DL + HL Sbjct: 300 WGEIERADVVLHLLDAREGLGADDRAIAGRFPAGVPVVRVFNKTDL-TDAPPAVAHLGGH 358 Query: 343 ---------------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL--SQ 385 +S+ G+G++ L ++ I + + + +RHL L +Q Sbjct: 359 AQADAAGGLDLSEVRLSAKRGDGIDLLRAELLRIAGWQAGAESVYL-ARERHLIALRAAQ 417 Query: 386 TVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++ LD+ AE LRLA L ITG + LL +IFS+FCIGK Sbjct: 418 AHLAQAAGHADQNAEALDLFAEELRLAQEQLNSITGEFTSDDLLGVIFSRFCIGK 472 >gi|260685218|ref|YP_003216503.1| tRNA modification GTPase TrmE [Clostridium difficile CD196] gi|260688877|ref|YP_003220011.1| tRNA modification GTPase TrmE [Clostridium difficile R20291] gi|260211381|emb|CBA67036.1| putative tRNA modification GTPase [Clostridium difficile CD196] gi|260214894|emb|CBE07700.1| putative tRNA modification GTPase [Clostridium difficile R20291] Length = 462 Score = 222 bits (566), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 165/457 (36%), Positives = 252/457 (55%), Gaps = 24/457 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK----KKKPFPRKASLRYFFGLDGR-I 60 +TI A++T I I+R+SG +V E I K K K +L Y LD I Sbjct: 8 DTIAAIATAPGEGGIGILRISGERALKVAEEIFKSMSGKSIEEYNKRTLIYGNILDNENI 67 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+ LL P S+TGED E + HGG V ILE L ++RLA GEF++RAF N Sbjct: 68 IDEVLLAYMKGPNSYTGEDVIEINCHGGFISVKKILE-LILSKDVRLAEAGEFTKRAFLN 126 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G+IDL +AE++ D+I ++T++ ++ + G LS + DK+T I + +E +D+ E Sbjct: 127 GRIDLSQAEAVIDVIKAKTDIAHEVAQNQLEGSLSKKIRELRDKVTEILAHVEVAIDYPE 186 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E D+++ + + + LK +I + G+I+R G K VI+G N GKSSL N++ Sbjct: 187 E-DIEHITYQTLKEKTDELKKEIKKLYDTAESGKILREGLKTVIVGKPNVGKSSLLNSIL 245 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDIPGTTRDV+ ++++G +KI DTAGIR+TDDIVEK G++++ +AD Sbjct: 246 GENRAIVTDIPGTTRDVIEEFVNIKGIPLKIVDTAGIRDTDDIVEKIGVEKSKESFTSAD 305 Query: 301 LILLLKEIN---SKKEISF---PKNIDFIFIGTKSDLYSTYTEE----YDH-----LISS 345 LI+++ + + S+++I K+ I + K+DL EE Y IS+ Sbjct: 306 LIVMVLDASRKLSEEDIEILEKLKDKQTIVLLNKNDLKQEIEEEKILKYVENNSIIKISA 365 Query: 346 FTGEGLEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLD 403 EG+EEL +KI+S++ K + ++ RH LS+ + A + E+ D Sbjct: 366 LQQEGIEELQDKIESMVYKGSIKNNSSLVVTNSRHKDALSKAYKSATDALIALEQSMPFD 425 Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + +L+ LG I G E LLD IF FCIGK Sbjct: 426 FVEVDLKNIWDYLGYINGDTVTEDLLDNIFHNFCIGK 462 >gi|269798908|ref|YP_003312808.1| tRNA modification GTPase TrmE [Veillonella parvula DSM 2008] gi|269095537|gb|ACZ25528.1| tRNA modification GTPase TrmE [Veillonella parvula DSM 2008] Length = 461 Score = 222 bits (566), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 152/460 (33%), Positives = 256/460 (55%), Gaps = 28/460 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGLD---G 58 +TI A++T + IIR+SG F + + K P + +++Y +D Sbjct: 5 DTIAAIATPPGIGGVGIIRVSGKDSFPIVNSLFKSTGTVPLMDCQNRTIQYGTIVDPTTN 64 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 + +D+ L+++ P S+T ED E HGGI V IL+ L ++R+A GEF++RAF Sbjct: 65 KTIDEVLVLLMKGPHSYTAEDVVEIQCHGGIVPVRQILKLLVNH-DVRMAEAGEFTKRAF 123 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG+IDL +AE++ D+I ++TE L++ + G +SS ++L + + +E +D+ Sbjct: 124 MNGRIDLTQAEAIIDIIEAKTEDSLSLAVAQLDGTVSSFVKDVREQLIAMIAHLEVTIDY 183 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 EE D+++ +S+EV + + + +S G +IR+G VI+G NAGKSSL NA Sbjct: 184 PEE-DIEDVTSQEVREQLQPILKAMDELLSTANTGRLIRDGITTVIVGRPNAGKSSLMNA 242 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L +++ AIVTDIPGTTRD + + +EG +++ DTAGIR+T D VE G++R + Sbjct: 243 LLRENRAIVTDIPGTTRDSIEEYMTVEGISLRLIDTAGIRDTQDTVEALGVERARDYINK 302 Query: 299 ADLILLLKEINSK---KEISFPKNI---DFIFIGTKSDLYSTYTEE--YDH-------LI 343 AD++L + + ++ +EI ++ + I + KSD+ T+E +H I Sbjct: 303 ADIVLCVIDGSTSLTPEEIEILTSVSGLNTIVLLNKSDVAQVVTDENIKEHGTFTAIERI 362 Query: 344 SSFTGEGLEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402 S+ GEG L ++ ++ + K+ ++ S+ RH+ + Q +E A L+ D G+ Sbjct: 363 SAKEGEGSAVLAKWVQELVYGGRVKQDNSAMISNVRHISLMEQAKAQVEQA-LSSIDMGM 421 Query: 403 --DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D +A +LR A LG ITG E ++D +FS+FC+GK Sbjct: 422 PVDFVATDLRSAWELLGDITGDTIRESMIDELFSRFCLGK 461 >gi|149006299|ref|ZP_01830011.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP18-BS74] gi|307127434|ref|YP_003879465.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 670-6B] gi|147762076|gb|EDK69038.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP18-BS74] gi|306484496|gb|ADM91365.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 670-6B] gi|332075631|gb|EGI86099.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA17545] Length = 457 Score = 222 bits (566), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 148/460 (32%), Positives = 258/460 (56%), Gaps = 24/460 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55 + E +TI A+ST AI I+RLSG F + + I K K + AS +G Sbjct: 2 ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIVQKIFKGKD-LNKVASHTLNYGHIIDP 60 Query: 56 LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 L G+++D+ ++ SP++FT ED E + HGGIAV N IL+ LA RLA PGEF++ Sbjct: 61 LTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 119 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG++DL +AE++ D+I ++T+ ++++ + G LS L ++ + + +E + Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNIRQEILNTLAQVEVN 179 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +D+ E +DV+ ++ V + + +++ + + G+I+R G I+G N GKSSL Sbjct: 180 IDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPNVGKSSL 239 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N L ++D AIVTDI GTTRDV+ +++ G +K+ DTAGIRETDDIVE+ G++R+ Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGVERSKKA 299 Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------I 343 ++ A+L+LL+ + ++ + ++ + I + K+DL T E L I Sbjct: 300 LKEANLVLLVLNASEPLTAQDRQLLEISQDTNRIILLNKTDLPETI--ETSKLPEDVIRI 357 Query: 344 SSFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDC 400 S + ++++ +I ++ + + + S+ RH+ + + V L+ + E Sbjct: 358 SVLKNQNIDKIEERINNLFFENAGLVEQDATYLSNARHISLIEKAVESLQAVNQGLELGM 417 Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+ITG ++L+ +FS+FC+GK Sbjct: 418 PVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457 >gi|227539827|ref|ZP_03969876.1| tRNA modification GTPase TrmE [Sphingobacterium spiritivorum ATCC 33300] gi|227240469|gb|EEI90484.1| tRNA modification GTPase TrmE [Sphingobacterium spiritivorum ATCC 33300] Length = 458 Score = 222 bits (566), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 157/455 (34%), Positives = 248/455 (54%), Gaps = 20/455 (4%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-DGR-I 60 ++ETI A++T AI++IRLSG ++ + + K + + +F + DG I Sbjct: 7 QQQETIVALATANGNGAIAVIRLSGKDAIEIANQVFRGKDLSAQPSHTVHFGTIRDGEEI 66 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+ L+ +F P S+T E E H ++ I+ L + R A PGEF+ RAF N Sbjct: 67 LDEVLVTLFVGPNSYTKEHVVEISTHNSKYIIERIISLLIR-KGARAAKPGEFTLRAFLN 125 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G +DL +AE++ADLI+S + +++M+ M G S+ + D L H S IE +LDFSE Sbjct: 126 GGMDLSQAEAVADLIASNSAASHQIAMQQMRGGFSNQLRKLRDDLIHFASLIELELDFSE 185 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQG-KLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 E DV+ F++++ L ++ N + + Q + G +++NG +VI G N GKS+L NAL Sbjct: 186 E-DVE-FANRDQLKLLILQINSVVRKLIQSFEQGNVLKNGVPVVIAGKPNVGKSTLLNAL 243 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 ++ AIV+DI GTTRD + ++++ G + DTAGIRET D++E +G++RT +++ A Sbjct: 244 LNEERAIVSDIAGTTRDTIEDEINIHGVTFRFIDTAGIRETVDVIEAKGVERTREKMKQA 303 Query: 300 DLILLL--------KEINSKKEISFPKNIDFIFIGTKSDLYST-----YTEEYDHLISSF 346 LI+ L ++ ++ E NI F+ I KSDL S Y IS+ Sbjct: 304 RLIIYLFDPVQDTIADVETQLEEVRSLNIPFVTIINKSDLLSEEQRAGYQSLSPVFISAK 363 Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDII 405 G+EEL +++ ++ + ++ RH+ L T L + D + Sbjct: 364 EQIGVEELKDELLRQVNLANLNTDDVMVTNIRHVEALQHTEDSLGRVLFGIDNPVTSDFL 423 Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A ++R A LG+ITG V + LLD IFSKFCIGK Sbjct: 424 AMDIRQALYHLGEITGSVSTDDLLDNIFSKFCIGK 458 >gi|195978293|ref|YP_002123537.1| tRNA modification GTPase TrmE [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974998|gb|ACG62524.1| tRNA modification GTPase TrmE [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 458 Score = 222 bits (566), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 152/462 (32%), Positives = 256/462 (55%), Gaps = 28/462 (6%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55 + E +TI A+ST AI I+RLSG + + I K K AS +G Sbjct: 3 ITKEFDTIAAISTPLGEGAIGIVRLSGTKALDIAKSIFKGKD-LTTVASHTLNYGHIIKP 61 Query: 56 LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 G ++D+ ++ V +P++FT ED E + HGGIAV N IL+ L K R+A PGEF++ Sbjct: 62 STGEVIDEVMVSVMLAPKTFTREDVIEINTHGGIAVTNDILQLLIKQ-GARMAEPGEFTK 120 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG+IDL +AE++ DLI ++T+ ++++ + G LS L ++ + + +E + Sbjct: 121 RAFLNGRIDLTQAEAVMDLIRAKTDKAMSIAIKQLDGSLSQLISDTRQEILNTLAQVEVN 180 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +D+ E +DV+ ++ + + + + + K G+I+R G I+G N GKSSL Sbjct: 181 IDYPEYDDVEEMTTALLRDKTQEFQALLEQLLRTAKRGKILREGLSTAIIGRPNVGKSSL 240 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N L ++D AIVTDI GTTRDV+ ++++G +K+ DTAGIRETDD+VE+ G++R+ Sbjct: 241 LNTLLREDKAIVTDIAGTTRDVIEEYVNIKGIPLKLVDTAGIRETDDLVEQIGVERSKKA 300 Query: 296 VENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEEYDHL------I 343 ++ ADL+LL+ + K ++ ++ + I + K+DL E D L I Sbjct: 301 LQEADLVLLVLNASEKLTEQDKALLALSQDSNRIILLNKTDLDQVI--EKDQLPEEAIPI 358 Query: 344 SSFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK--- 398 S + ++ + ++I + + + S+ RH+ + Q V+ LE ++NE Sbjct: 359 SVLQNQNIDLIEDRINQLFFDHTGLIEQDATYLSNARHISLIEQAVQSLE--AVNEGLAL 416 Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L A LG+ITG ++L+ +FS+FC+GK Sbjct: 417 GMPVDLLQIDLTRAWEILGEITGDAAPDELITQLFSQFCLGK 458 >gi|225858807|ref|YP_002740317.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 70585] gi|225720545|gb|ACO16399.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 70585] Length = 457 Score = 222 bits (566), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 148/460 (32%), Positives = 257/460 (55%), Gaps = 24/460 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55 + E +TI A+ST AI I+RLSG F + + I K K + AS +G Sbjct: 2 ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKD-LNKVASHTLNYGHIIDP 60 Query: 56 LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 L G+++D+ ++ SP++FT ED E + HGGIAV N IL+ LA RLA PGEF++ Sbjct: 61 LTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 119 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG++DL +AE++ D+I ++T+ ++++ + G LS L ++ + + +E + Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 179 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +D+ E +DV+ ++ V + + +++ + + G+I+R G I+G N GKSSL Sbjct: 180 IDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPNVGKSSL 239 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N L ++D AIVTDI GTTRDV+ +++ G +K+ DTAGIRETDD VE+ G++R+ Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDTVEQIGVERSKKA 299 Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------I 343 ++ ADL+LL+ + ++ + ++ + I + K+DL T E L I Sbjct: 300 LKEADLVLLVLNASEPLTAQDRQLLEISQDTNRIILLNKTDLPETI--ETSKLPEDVIRI 357 Query: 344 SSFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDC 400 S + ++++ +I ++ + + + S+ RH+ + + V L+ + E Sbjct: 358 SVLKNQNIDKIEERINNLFFENAGLVEQDATYLSNARHISLIEKAVESLQAVNQGLELGM 417 Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+ITG ++L+ +FS+FC+GK Sbjct: 418 PVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457 >gi|313893537|ref|ZP_07827107.1| tRNA modification GTPase TrmE [Veillonella sp. oral taxon 158 str. F0412] gi|313441980|gb|EFR60402.1| tRNA modification GTPase TrmE [Veillonella sp. oral taxon 158 str. F0412] Length = 461 Score = 222 bits (566), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 152/460 (33%), Positives = 257/460 (55%), Gaps = 28/460 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGLD---G 58 +TI A++T + IIR+SG F + + K P + +++Y +D Sbjct: 5 DTIAAIATPPGIGGVGIIRVSGKDSFPIVNSLFKSAGTVPLMDRQNRTIQYGTIVDPATN 64 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 + +D+ L+++ P S+T ED E HGGI V IL+ L ++R+A GEF++RAF Sbjct: 65 KTIDEVLVLLMKGPHSYTAEDVVEIQCHGGIVPVRQILKLLVNH-DVRMAEAGEFTKRAF 123 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG+IDL +AE++ D+I ++TE L++ + G +SS ++L + + +E +D+ Sbjct: 124 MNGRIDLTQAEAIIDIIEAKTEDSLSLAVSQLDGTVSSFVKDVREQLIAMIAHLEVTIDY 183 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 EE D+++ +S+EV + + + + +S G +IR+G VI+G NAGKSSL NA Sbjct: 184 PEE-DIEDVTSQEVSDQLQPILKAMDELLSTANTGRLIRDGITTVIVGRPNAGKSSLMNA 242 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L +++ AIVTDIPGTTRD + + +EG +++ DTAGIR+T D VE G++R + Sbjct: 243 LLRENRAIVTDIPGTTRDSIEEYMTVEGISLRLIDTAGIRDTQDTVEALGVERARDYINK 302 Query: 299 ADLILLLKEIN---SKKEISFPKNI---DFIFIGTKSDLYSTYTEE--YDH-------LI 343 AD++L + + + + +EI ++ + I + KSD+ T+E +H I Sbjct: 303 ADIVLCVIDGSTPLTPEEIEILTSVSGLNTIVLLNKSDVAQVVTDENIKEHGTFTAIERI 362 Query: 344 SSFTGEGLEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402 S+ GEG L ++ ++ + K+ ++ S+ RH+ + Q +E A L+ D G+ Sbjct: 363 SAKEGEGSAVLSKWVQELVYGGRVKQDNSAMISNVRHISLMEQAKAQVEQA-LSSIDMGM 421 Query: 403 --DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D +A +LR A LG ITG E ++D +FS+FC+GK Sbjct: 422 PVDFVATDLRSAWELLGDITGDTIRESMIDELFSRFCLGK 461 >gi|148994246|ref|ZP_01823539.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP9-BS68] gi|168488838|ref|ZP_02713037.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP195] gi|147927387|gb|EDK78418.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP9-BS68] gi|183572349|gb|EDT92877.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP195] gi|332073349|gb|EGI83828.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA17570] Length = 457 Score = 222 bits (566), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 149/460 (32%), Positives = 257/460 (55%), Gaps = 24/460 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55 + E +TI A+ST AI I+RLSG F + + I K K + AS +G Sbjct: 2 ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKD-LNKVASHTLNYGHIIDP 60 Query: 56 LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 L G+++D+ ++ SP++FT ED E + HGGIAV N IL+ LA RLA PGEF++ Sbjct: 61 LTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 119 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG++DL +AE++ D+I ++T+ ++++ + G LS L ++ + + IE + Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNIRQEILNTLAQIEVN 179 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +D+ E +DV+ ++ V + + ++ + + G+I+R G I+G N GKSSL Sbjct: 180 IDYPEYDDVEEATTAVVREKTMEFEQLLTKLLRTARRGKILREGISTAIIGRPNVGKSSL 239 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N L ++D AIVTDI GTTRDV+ +++ G +K+ DTAGIRETDDIVE+ G++R+ Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGVERSKKA 299 Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------I 343 ++ A+L+LL+ + ++ + ++ + I + K+DL T E L I Sbjct: 300 LKEANLVLLVLNASEPLTAQDRQLLEISQDTNRIILLNKTDLPETI--ETSKLPEDVIRI 357 Query: 344 SSFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDC 400 S + ++++ +I ++ + + + S+ RH+ + + V L+ + E Sbjct: 358 SVLKNQNIDKIEERINNLFFENAGLIEQDATYLSNARHISLIEKAVESLQAVNQGLELGM 417 Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+ITG ++L+ +FS+FC+GK Sbjct: 418 PVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457 >gi|332286178|ref|YP_004418089.1| tRNA modification GTPase TrmE [Pusillimonas sp. T7-7] gi|330430131|gb|AEC21465.1| tRNA modification GTPase TrmE [Pusillimonas sp. T7-7] Length = 488 Score = 222 bits (565), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 166/493 (33%), Positives = 246/493 (49%), Gaps = 63/493 (12%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK-KKPF-PRKASLRYFFGLDGRI 60 H + I A++T I ++R+SG Q+ I + P PR A F G+ Sbjct: 4 HSHDPIVAIATAPGRGGIGVVRVSG---NQLEPLISRLFTTPIKPRHAHYLPFNDEHGKA 60 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEFSRRA 117 +D G+++ F P+S+TGED E HGG AV+ +L + K +R A PGEF+ RA Sbjct: 61 IDAGIVLFFKGPQSYTGEDVLELQGHGGPAVLRRLLARCLDAGKDLGIRHAEPGEFTHRA 120 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F N ++DL +AE++ADLI + +E R +M +SG S D++ H+R +EA LD Sbjct: 121 FLNERLDLAQAEAVADLIDASSEAAARSAMASLSGAFSDQVNALGDRIVHLRMLVEATLD 180 Query: 178 FSEEED--VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 F EEE ++ + ++ L I + D+ Q + G I+R G +V+ G N GKSSL Sbjct: 181 FPEEEIDFLEKYQARAALEAI---RKDLQHLTQQARQGMILREGLHVVLAGQPNVGKSSL 237 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 NALA D+AIVT I GTTRD + + ++G + I DTAG+RET+D VE GI RT+ E Sbjct: 238 LNALAGDDIAIVTPIAGTTRDKVIQQIHIQGVPLHIVDTAGLRETEDTVESIGIARTWAE 297 Query: 296 VENADLILLLK-------EINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY--------- 339 +E A++I+ L+ E+++ P + + K DL + + Sbjct: 298 IEKANVIIHLQDARAQNDELDTAITRRLPARTPVLKVFNKIDLLPENEQAHFQPGTVSTL 357 Query: 340 ------------------------DHL-----ISSFTGEGLEELINKIKSILS-NKFKKL 369 DH IS+ TG GL+ L ++ +I N + Sbjct: 358 ATDSTSPGHSTGKASDPSAQKASDDHQELALGISAKTGAGLDTLRQQLLNIAGWNPGSES 417 Query: 370 PFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQ 427 P+ + +RHL L +L +A ++ D LD+ AE LRLA L ITG + Sbjct: 418 PWL--ARERHLTALQHASEHLALAHEHASQNDRVLDLFAEELRLAHEELCLITGQFTSDD 475 Query: 428 LLDIIFSKFCIGK 440 LL IFS FCIGK Sbjct: 476 LLGEIFSSFCIGK 488 >gi|319789803|ref|YP_004151436.1| tRNA modification GTPase TrmE [Thermovibrio ammonificans HB-1] gi|317114305|gb|ADU96795.1| tRNA modification GTPase TrmE [Thermovibrio ammonificans HB-1] Length = 469 Score = 222 bits (565), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 159/464 (34%), Positives = 256/464 (55%), Gaps = 31/464 (6%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGLD----G 58 ++TI A+ST AI I+R+SG + F K K + ++GL G Sbjct: 9 EDTIAAISTPIGKGAIGIVRISGKDALTILRRLFRTKGGKEKLEFEDRKMYYGLVVDRFG 68 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 +D+ L + +P++FTGED E HVHGGI VV +L E+ RLA PGEF+ RAF Sbjct: 69 EPIDEVLAVYMKAPKTFTGEDVVELHVHGGIVVVRKVLREVLAC-GARLAKPGEFTMRAF 127 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 +GKIDL++AE++ LI + +E+ ++++E + G+LS + +L +++ IEA +DF Sbjct: 128 IHGKIDLVQAEAINQLIEATSELSAKVALEQLEGKLSKRIKELQTRLLELKAVIEAAVDF 187 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 +EE V+ S + + L +++ I + G IR G K+ I+G N GKSSL NA Sbjct: 188 PDEE-VEIIESHRIKEHLRGLIDELEKLIQTYREGRYIREGIKVAIVGRPNVGKSSLLNA 246 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 + +++ AIVT+IPGTTRDV+ + +G V++ DTAGIRE+ D+VE+ GI+++ ++ Sbjct: 247 ILQEERAIVTEIPGTTRDVIEETVTFKGLPVRLLDTAGIRESADVVERIGIEKSLKSLKE 306 Query: 299 ADLILL-------LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH---------L 342 AD++L L E + K + + I + K+DL T E + Sbjct: 307 ADVVLFVLDGSEGLTEEDLKIASLLNRKDNVIAVINKADLALKLTCEQLKETLGVGRCVI 366 Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFS---IPSHKRHLYHLSQTVRYLEMASLNEKD 399 IS+ G+G++EL + + +L + + L + + +RH L + LE A LN + Sbjct: 367 ISAKEGKGIDELASAMMELLLLEPESLLGGDEVLITSERHRELLERAKTSLEKA-LNSLN 425 Query: 400 CGL---DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G + ++ ++ A +LG+I G V E + DIIFS+FCIGK Sbjct: 426 LGYESPEFLSMDIDDALKALGEIVGEVTTEDMFDIIFSRFCIGK 469 >gi|47459397|ref|YP_016259.1| tRNA modification GTPase TrmE [Mycoplasma mobile 163K] gi|81828449|sp|Q6KH82|MNME_MYCMO RecName: Full=tRNA modification GTPase mnmE gi|47458727|gb|AAT28048.1| thiophene and furan oxidation protein [Mycoplasma mobile 163K] Length = 442 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 159/446 (35%), Positives = 250/446 (56%), Gaps = 17/446 (3%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A++TG AISIIR+SG F++ + I K + + + +I+D+ L Sbjct: 3 DTIAAIATGNSIQAISIIRISGSDSFKIVKKIFTGKIGKNKTITYGNILNHERKIVDEVL 62 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + F +FTGE+S E HGGI V N +L+ L RLA GEFSRR+F N K+D Sbjct: 63 VAWFEGTNNFTGENSVEIFCHGGIVVTNLVLQLLI-ANGARLAERGEFSRRSFLNKKMDF 121 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 ++AE++ DLI ++T Q ++S+ G++S +ID L ++ + E ++D+ E +DV+ Sbjct: 122 VKAEAINDLIHAKTIRQAQISVNKFDGKISKDIESYIDTLLYLIATCETNIDYPEYDDVE 181 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 N ++ +L I L ++ I + II NG KI I+G N GKSSL NAL ++ A Sbjct: 182 NLHNETLLPKIKELIQKLNDLIKISEKASIIYNGLKIAIVGKPNVGKSSLLNALLNEERA 241 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVT+ GTTRDV+ ++G+L ISDTAG+RE + +E GI++TF +E +D+IL + Sbjct: 242 IVTNEAGTTRDVIEASFQIDGFLFSISDTAGLREVQNNIENLGIQKTFETIEKSDIILHI 301 Query: 306 KEINSKKEISFPKNID-------FIFIGTKSDLYSTYTEEYDHLIS-SFTGEGLEELINK 357 + N + E F K I+ ++ I K DL + ++ +H+I S + + EL NK Sbjct: 302 IQPN-EAENDFDKQIEIKSKNKIYLKILNKKDLIKNHNKQ-NHMIKISTLNKDIIELENK 359 Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGL--DIIAENLRLASV 414 + S ++ P I S + L + ++ YL ++ E + GL D++ ++ A Sbjct: 360 LSSYCNDVEWDNPNLIYS-QNQLSMIKKS--YLALSEAKEGLESGLTPDVVIIDITKAWE 416 Query: 415 SLGKITGCVDVEQLLDIIFSKFCIGK 440 SL I G D E LLD +FS FC+GK Sbjct: 417 SLVNIKGKADNELLLDKMFSNFCLGK 442 >gi|254977337|ref|ZP_05273809.1| tRNA modification GTPase TrmE [Clostridium difficile QCD-66c26] gi|255094668|ref|ZP_05324146.1| tRNA modification GTPase TrmE [Clostridium difficile CIP 107932] gi|255316421|ref|ZP_05358004.1| tRNA modification GTPase TrmE [Clostridium difficile QCD-76w55] gi|255519081|ref|ZP_05386757.1| tRNA modification GTPase TrmE [Clostridium difficile QCD-97b34] gi|255652264|ref|ZP_05399166.1| tRNA modification GTPase TrmE [Clostridium difficile QCD-37x79] gi|306521979|ref|ZP_07408326.1| tRNA modification GTPase TrmE [Clostridium difficile QCD-32g58] Length = 459 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 165/457 (36%), Positives = 252/457 (55%), Gaps = 24/457 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK----KKKPFPRKASLRYFFGLDGR-I 60 +TI A++T I I+R+SG +V E I K K K +L Y LD I Sbjct: 5 DTIAAIATAPGEGGIGILRISGERALKVAEEIFKSMSGKSIEEYNKRTLIYGNILDNENI 64 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+ LL P S+TGED E + HGG V ILE L ++RLA GEF++RAF N Sbjct: 65 IDEVLLAYMKGPNSYTGEDVIEINCHGGFISVKKILE-LILSKDVRLAEAGEFTKRAFLN 123 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G+IDL +AE++ D+I ++T++ ++ + G LS + DK+T I + +E +D+ E Sbjct: 124 GRIDLSQAEAVIDVIKAKTDIAHEVAQNQLEGSLSKKIRELRDKVTEILAHVEVAIDYPE 183 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E D+++ + + + LK +I + G+I+R G K VI+G N GKSSL N++ Sbjct: 184 E-DIEHITYQTLKEKTDELKKEIKKLYDTAESGKILREGLKTVIVGKPNVGKSSLLNSIL 242 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDIPGTTRDV+ ++++G +KI DTAGIR+TDDIVEK G++++ +AD Sbjct: 243 GENRAIVTDIPGTTRDVIEEFVNIKGIPLKIVDTAGIRDTDDIVEKIGVEKSKESFTSAD 302 Query: 301 LILLLKEIN---SKKEISF---PKNIDFIFIGTKSDLYSTYTEE----YDH-----LISS 345 LI+++ + + S+++I K+ I + K+DL EE Y IS+ Sbjct: 303 LIVMVLDASRKLSEEDIEILEKLKDKQTIVLLNKNDLKQEIEEEKILKYVENNSIIKISA 362 Query: 346 FTGEGLEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLD 403 EG+EEL +KI+S++ K + ++ RH LS+ + A + E+ D Sbjct: 363 LQQEGIEELQDKIESMVYKGSIKNNSSLVVTNSRHKDALSKAYKSATDALIALEQSMPFD 422 Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + +L+ LG I G E LLD IF FCIGK Sbjct: 423 FVEVDLKNIWDYLGYINGDTVTEDLLDNIFHNFCIGK 459 >gi|307265442|ref|ZP_07546998.1| tRNA modification GTPase TrmE [Thermoanaerobacter wiegelii Rt8.B1] gi|306919556|gb|EFN49774.1| tRNA modification GTPase TrmE [Thermoanaerobacter wiegelii Rt8.B1] Length = 462 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 162/461 (35%), Positives = 249/461 (54%), Gaps = 30/461 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA----SLRYFFGLDGR-- 59 +TI A+ST + I I+R+SG ++ I K KP K +L Y +D Sbjct: 6 DTIAAISTFPGEAGIGIVRISGDDALEIISKIFKPYKPKDIKKVKSHTLHYGHIVDPETE 65 Query: 60 -ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 + D+ L+ + P ++T ED E + HGGI V + ILE + K RLA PGEF++RAF Sbjct: 66 EVYDEVLVSIMKKPNTYTREDIVEINCHGGIVVTSKILELVLKQ-GARLAEPGEFTKRAF 124 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG+IDL +AE++ D+I+++T + + + + +SG + + DK+ + + A +DF Sbjct: 125 LNGRIDLSQAEAVIDIITAKTMLANKYAQKQLSGHIGQKMKELKDKIMGLLVHLLALIDF 184 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E+ DV+ KE+L + DI I + G +IR G K I+G N GKSSL NA Sbjct: 185 PED-DVEELERKEMLETAKEIVEDIDKLIVSSESGRVIREGLKTAIIGKPNVGKSSLLNA 243 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L K++ AIVTDIPGTTRD++ ++++G +K+ DTAGIR+TD++VEK G+ ++ + Sbjct: 244 LLKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAGIRDTDELVEKIGVAKSKEVLAE 303 Query: 299 ADLIL--------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTE-EYDHL------- 342 ADLIL L KE +I KNI +F+ K DL E E +L Sbjct: 304 ADLILFVLDASRELTKEDYEIFDILVGKNI--VFVLNKIDLPKKIDEKELKNLTKDGIII 361 Query: 343 -ISSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE-MASLNEKD 399 +S+ GL+EL + I + + I ++ RH L +Y+E + E++ Sbjct: 362 EVSTVEKIGLQELEDTIYNLVFKGNINVKEDEIITNSRHKEALINAKKYMESVVEAIERE 421 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D+I +L A +GKITG E L++ IF +FC+GK Sbjct: 422 YSEDLITIDLNAALEQIGKITGETATEDLINQIFERFCVGK 462 >gi|256751460|ref|ZP_05492338.1| tRNA modification GTPase TrmE [Thermoanaerobacter ethanolicus CCSD1] gi|256749679|gb|EEU62705.1| tRNA modification GTPase TrmE [Thermoanaerobacter ethanolicus CCSD1] Length = 462 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 171/464 (36%), Positives = 245/464 (52%), Gaps = 36/464 (7%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRK-------ASLRYFFGLDG 58 +TI A+ST + I I+RLSG E I K KP+ K +L Y + +D Sbjct: 6 DTIAAISTFPGEAGIGIVRLSGDDAL---EIISKIFKPYKSKDIKKVKSHTLHYGYIVDP 62 Query: 59 R---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 + D+ L+ + P ++T ED E + HGGI V + ILE + K RLA PGEF++ Sbjct: 63 ETEEVYDEVLVSIMKKPNTYTREDIVEINCHGGIVVTSKILELVLKQ-GARLAEPGEFTK 121 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG+IDL +AE++ D+I ++T + R + + + G + S + DK+ + + A Sbjct: 122 RAFLNGRIDLSQAEAVIDIIRAKTMLANRYAQKQLVGYVGSKIKEMKDKIMGLLVHLLAL 181 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +DF EE DV+ KE+L + DI I+ + G IIR G K I+G N GKSSL Sbjct: 182 IDFPEE-DVEELERKEILETAKEIVEDIDKLIASSESGRIIREGLKTAIIGKPNVGKSSL 240 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 NAL K++ AIVTDIPGTTRD++ ++++G +K+ DTAGIR+TD++VEK G+ ++ Sbjct: 241 LNALLKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAGIRDTDELVEKIGVTKSKEV 300 Query: 296 VENADLIL--------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTE-EYDHL---- 342 + ADLIL L KE +I KNI IF+ K DL E E L Sbjct: 301 LAEADLILFVLDASRELTKEDYEIFDILTGKNI--IFVLNKIDLPKKIDEKELKDLTKDG 358 Query: 343 ----ISSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE-MASLN 396 +S+ GLEEL N I + + I + RH L +Y+E Sbjct: 359 IIIEVSTVEKIGLEELENTIYNLVFRGDISLREDEIVINSRHKEALINAKKYMESCVEAI 418 Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E D+I +L A LGKITG E L++ IF +FC+GK Sbjct: 419 EGGYSEDLITIDLNAALDQLGKITGETATEDLINEIFERFCVGK 462 >gi|309800286|ref|ZP_07694459.1| tRNA modification GTPase TrmE [Streptococcus infantis SK1302] gi|308116070|gb|EFO53573.1| tRNA modification GTPase TrmE [Streptococcus infantis SK1302] Length = 457 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 151/460 (32%), Positives = 264/460 (57%), Gaps = 24/460 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKAS--LRYFFGLD- 57 + E +TI A+ST AI I+RLSG F + + I K K + AS L Y +D Sbjct: 2 ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKD-LSKVASHTLNYGHIVDP 60 Query: 58 --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 G+++D+ ++ SP++FT ED E + HGGIAV N IL+ LA R+A PGEF++ Sbjct: 61 QTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARMAEPGEFTK 119 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG++DL +AE++ D+I ++T+ ++++ + G LS L ++ + + +E + Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 179 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +D+ E +DV+ ++ V L + +++ + + G+I+R G I+G N GKSSL Sbjct: 180 IDYPEYDDVEEATTAVVREKTLEFEQLLTNLLKTARRGKILREGISTAIIGRPNVGKSSL 239 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N L ++D AIVTDI GTTRDV+ +++ G +K+ DTAGIRETDDIVE+ G++R+ Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGVERSKKA 299 Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTY--TEEYDHL--ISS 345 ++ ADL+LL+ + ++ + ++ + I + K+DL +E D + IS Sbjct: 300 LKEADLVLLVLNASEPLTAQDRQLLEISQDTNRIILLNKTDLPEAIETSELPDAVIRISV 359 Query: 346 FTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGL 402 + ++++ +I ++ + + + S+ RH+ + + V L+ ++NE + G+ Sbjct: 360 LKNQNIDKIEERINNLFFENAGLVEQDATYLSNARHISLIEKAVESLQ--AVNEGLELGM 417 Query: 403 --DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D++ +L LG+ITG ++L+ +FS+FC+GK Sbjct: 418 PVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457 >gi|257875886|ref|ZP_05655539.1| tRNA modification GTPase mnmE [Enterococcus casseliflavus EC20] gi|257810052|gb|EEV38872.1| tRNA modification GTPase mnmE [Enterococcus casseliflavus EC20] Length = 481 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 152/463 (32%), Positives = 249/463 (53%), Gaps = 24/463 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK-KKPFPRKASLRYFFGL--- 56 + E +TI A+ST AISI+RLSG + + I + K + S +G Sbjct: 20 ITQEFDTIAAISTPPGEGAISIVRLSGEKAIAIADRIFQAGTKTLAQVPSHTIHYGHIVD 79 Query: 57 --DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114 + R++D+ +L V P +FT ED E + HGGI VVN +L+ L RLA PGEF+ Sbjct: 80 PEENRLMDEVMLSVMKKPRTFTREDVVEINCHGGIVVVNQLLQ-LVLRQGARLAEPGEFT 138 Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174 +RAF NG++DL +AE++ DLI ++T+ L++ + G LS L ++ + +E Sbjct: 139 KRAFLNGRVDLSQAEAVMDLIRAKTDKAMNLAVNQLDGNLSHLIRTLRQEILETLAQVEV 198 Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234 ++D+ E +DV+ +++ +L +K I + ++ + G+I+R G I+G N GKSS Sbjct: 199 NIDYPEYDDVEELTTRLLLEKATMVKGQIQALLATAQQGKILREGLSTAIIGRPNVGKSS 258 Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294 L N L +++ AIVTDI GTTRDV+ +++ G +K+ DTAGIRET+D+VEK G++R+ Sbjct: 259 LLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVEKIGVERSRK 318 Query: 295 EVENADLILLLKEINS------KKEISFPKNIDFIFIGTKSDL--------YSTY-TEEY 339 + A+LILL+ + K+ + I + K+DL + Y +E Sbjct: 319 ALAEAELILLVLNQSEGLTQEDKQLLELTAGSRRIILLNKTDLEPKLAPAELAQYAADEP 378 Query: 340 DHLISSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNE 397 +S T EGL++L I + K S S+ RH+ L V+ L E+ E Sbjct: 379 IFSVSVLTSEGLDQLEQAIADLFFGGKTTDKDASYLSNTRHIALLENAVQSLSEVIQGIE 438 Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ ++ LG++ G ++L+ +FS+FC+GK Sbjct: 439 AGMPVDLVQIDMTRCWDYLGEVVGDSVQDELITQLFSQFCLGK 481 >gi|325567648|ref|ZP_08144315.1| tRNA modification GTPase TrmE [Enterococcus casseliflavus ATCC 12755] gi|325159081|gb|EGC71227.1| tRNA modification GTPase TrmE [Enterococcus casseliflavus ATCC 12755] Length = 481 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 152/463 (32%), Positives = 249/463 (53%), Gaps = 24/463 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK-KKPFPRKASLRYFFGL--- 56 + E +TI A+ST AISI+RLSG + + I + K + S +G Sbjct: 20 ITQEFDTIAAISTPPGEGAISIVRLSGEEAIAIADRIFQAGTKTLAQVPSHTIHYGHIVD 79 Query: 57 --DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114 + R++D+ +L V P +FT ED E + HGGI VVN +L+ L RLA PGEF+ Sbjct: 80 PEENRLMDEVMLSVMKKPRTFTREDVVEINCHGGIVVVNQLLQ-LVLRQGARLAEPGEFT 138 Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174 +RAF NG++DL +AE++ DLI ++T+ L++ + G LS L ++ + +E Sbjct: 139 KRAFLNGRVDLSQAEAVMDLIRAKTDKAMNLAVNQLDGNLSHLIRTLRQEILETLAQVEV 198 Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234 ++D+ E +DV+ +++ +L +K I + ++ + G+I+R G I+G N GKSS Sbjct: 199 NIDYPEYDDVEELTTRLLLEKATMVKGQIQALLATAQQGKILREGLSTAIIGRPNVGKSS 258 Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294 L N L +++ AIVTDI GTTRDV+ +++ G +K+ DTAGIRET+D+VEK G++R+ Sbjct: 259 LLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVEKIGVERSRK 318 Query: 295 EVENADLILLLKEINS------KKEISFPKNIDFIFIGTKSDL--------YSTY-TEEY 339 + A+LILL+ + K+ + I + K+DL + Y +E Sbjct: 319 ALAEAELILLVLNQSEGLTQEDKQLLELTAGSRRIILLNKTDLEPKLAPAELAQYAADEP 378 Query: 340 DHLISSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNE 397 +S T EGL++L I + K S S+ RH+ L V+ L E+ E Sbjct: 379 IFSVSVLTNEGLDQLEQAIADLFFGGKTTDKDASYLSNTRHIALLENAVQSLSEVIQGIE 438 Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ ++ LG++ G ++L+ +FS+FC+GK Sbjct: 439 AGMPVDLVQIDMTRCWDYLGEVVGDSVQDELITQLFSQFCLGK 481 >gi|306825270|ref|ZP_07458612.1| tRNA modification GTPase TrmE [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432706|gb|EFM35680.1| tRNA modification GTPase TrmE [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 457 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 151/460 (32%), Positives = 263/460 (57%), Gaps = 24/460 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKAS--LRYFFGLD- 57 + E +TI A+ST AI I+RLSG F + + I K K + AS L Y +D Sbjct: 2 ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKD-LSKVASHTLNYGHIIDP 60 Query: 58 --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 G+++D+ ++ SP++FT ED E + HGGIAV N IL+ LA RLA PGEF++ Sbjct: 61 QTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 119 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG++DL +AE++ D+I ++T+ ++++ + G LS L ++ + + +E + Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 179 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +D+ E +DV+ ++ V + + +++ + + G+I+R G I+G N GKSSL Sbjct: 180 IDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTAQRGKILREGISTAIIGRPNVGKSSL 239 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N L ++D AIVTDI GTTRDV+ +++ G +K+ DTAGIR+TDDIVE+ G++R+ Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRDTDDIVEQIGVERSRKA 299 Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTY-TEEYDH---LISS 345 ++ ADL+LL+ + ++ + ++ + I + K+DL T T E IS Sbjct: 300 LKEADLVLLVLNASEPLTAQDRQLLEISQDTNRIILLNKTDLPETIETSELPEDVIRISV 359 Query: 346 FTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGL 402 + ++++ +I ++ + + + S+ RH+ + + V L+ ++NE + G+ Sbjct: 360 LKNQNIDKIEERINNLFFENAGLVEQDATYLSNARHISLIEKAVESLQ--AVNEGLELGM 417 Query: 403 --DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D++ +L LG+ITG ++L+ +FS+FC+GK Sbjct: 418 PVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457 >gi|309390345|gb|ADO78225.1| tRNA modification GTPase trmE [Halanaerobium praevalens DSM 2228] Length = 464 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 161/462 (34%), Positives = 252/462 (54%), Gaps = 27/462 (5%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI--- 60 +++TI A++T IR+SGP +Q+ + I K K + + + G I Sbjct: 5 KEDTIAAIATPFGTGGTGKIRISGPQAYQIGDKIFKSVKKEKKLKEQKTYTAHYGEIRDP 64 Query: 61 -----LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 +D+ + I+ P SFTGE+ EF HGG+ + +LE + K R+A PGEFS+ Sbjct: 65 KTDKTIDEVVAIMMKKPHSFTGENVLEFDCHGGMTPLRAVLELVLKQ-GARMAEPGEFSQ 123 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG+IDL +AE++ ++I+S+TE L+++ ++G+LS+ + D+ I + +EA Sbjct: 124 RAFLNGRIDLAQAEAIIEVINSKTEKSLDLAIDQLNGKLSNKVEKIKDQAVEILAHLEAA 183 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +D+ E+E ++ F +++ + +LK + + K G+I + G K VI+G N GKSSL Sbjct: 184 IDYPEDE-IEGFRPEKLGDKFNYLKQETDKLLKSSKQGKIYKEGLKTVIVGKPNVGKSSL 242 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N ++ AIVTDIPGTTRDV+ ++L+G +KI DTAGIRET D VEK G+++T Sbjct: 243 LNYFLEEKRAIVTDIPGTTRDVIEEYINLKGIPLKIIDTAGIRETKDAVEKIGVEKTRKL 302 Query: 296 VENADLILLLKEINS-----KKEI-SFPKNIDFIFIGTKSDLYSTYT-----EEYDH--- 341 E ADL+L + +IN +EI KN I I K+DL + T EE+ Sbjct: 303 AEKADLVLFMLDINQGITAEDREIYQLIKNKPVIIIVNKTDLEAKITKEKIKEEFPEPSL 362 Query: 342 -LISSFTGEGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL-NEK 398 IS EGL +L + I IL + + ++ + RH L + +E + +E Sbjct: 363 LWISILKEEGLIQLKDNILAEILDEEIEADTEAVITQSRHRDALVKAQSAIERVIVSHET 422 Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D + +L+ LGKITG + +LD IF FC+GK Sbjct: 423 KMPYDFLTIDLKDFLNGLGKITGETVADDILDRIFKDFCLGK 464 >gi|86606766|ref|YP_475529.1| tRNA modification GTPase TrmE [Synechococcus sp. JA-3-3Ab] gi|123505609|sp|Q2JSU8|MNME_SYNJA RecName: Full=tRNA modification GTPase mnmE gi|86555308|gb|ABD00266.1| tRNA modification GTPase TrmE [Synechococcus sp. JA-3-3Ab] Length = 459 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 150/443 (33%), Positives = 237/443 (53%), Gaps = 28/443 (6%) Query: 19 AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL----DGRILDKGLLIVFPSPES 74 +I I+RLSG + + I + S R +G GR LD+ L + +P S Sbjct: 24 SIGIVRLSGSRALAIAQAIFTPARRNAVWESHRLLYGWIHDEKGRRLDEALAVWMQAPRS 83 Query: 75 FTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADL 134 +T ED E H HGGI VV L++ + RLA PGEFS RAF NG+IDL +AES+ADL Sbjct: 84 YTREDVVELHCHGGIMVVQATLQQCLRQ-GARLAQPGEFSLRAFLNGRIDLTQAESVADL 142 Query: 135 ISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE---DVQNFSSKE 191 +++ + ++++ G+ G+L +L + + IEA LDF E+ DV + ++ Sbjct: 143 VAARSPQAAQMALAGLQGKLGQSIRALRQELLGLLAEIEARLDFEEDLPPLDVPAWQAR- 201 Query: 192 VLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIP 251 L DI + + + ++ + G+++R G K+ I+G N GKSSL NA + +D AIVTD+P Sbjct: 202 -LQDI---QAQMQALLATAERGQLLRTGVKVAIVGRPNVGKSSLLNAWSGQDRAIVTDLP 257 Query: 252 GTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL------ 305 GTTRDV+ L + G V++ DTAGIR TDD VE+ G++R+ + AD+++L+ Sbjct: 258 GTTRDVVESQLVVRGIPVQLLDTAGIRATDDPVERLGVERSQRLAQTADVLVLVIDAQAG 317 Query: 306 -KEINSKKEISFPKNIDFIFIGTKSDLYST----YTEEYDHLISSFT--GEGLEELINKI 358 E ++ S ++ I + K+DL E + + + G+G+ EL + Sbjct: 318 WTEADAAIYASI-RHRPLILVINKTDLAPADKIRLPPEIAYRVPAVAAQGQGIPELEEAL 376 Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE-MASLNEKDCGLDIIAENLRLASVSLG 417 + +++ + + ++R L Q LE + + LD +LR A +LG Sbjct: 377 EQLVTQGRPQPNLEVSLNQRQAAALRQAQASLEQVVQAMQAQLPLDFWTIDLRGALHALG 436 Query: 418 KITGCVDVEQLLDIIFSKFCIGK 440 +ITG E +LD IFS+FCIGK Sbjct: 437 QITGEEISEAVLDQIFSRFCIGK 459 >gi|289167974|ref|YP_003446243.1| tRNA modification GTPase TrmE [Streptococcus mitis B6] gi|288907541|emb|CBJ22378.1| tRNA modification GTPase TrmE [Streptococcus mitis B6] Length = 457 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 151/460 (32%), Positives = 262/460 (56%), Gaps = 24/460 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKAS--LRYFFGLD- 57 + E +TI A+ST AI I+RLSG F + + I K K + AS L Y +D Sbjct: 2 ITREFDTIAAISTPLGEGAIGIVRLSGTESFSIAQKIFKGKD-LSQVASHTLNYGHIVDP 60 Query: 58 --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 G+++D+ ++ SP++FT ED E + HGGIAV N IL+ LA RLA PGEF++ Sbjct: 61 QTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 119 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG++DL +AE++ D+I ++T+ ++++ + G LS L ++ + + +E + Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 179 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +D+ E +DV+ ++ V + + +++ + + G+I+R G I+G N GKSSL Sbjct: 180 IDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPNVGKSSL 239 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N L ++D AIVTDI GTTRDV+ +++ G +K+ DTAGIRETDDIVE+ G++R+ Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGVERSKKA 299 Query: 296 VENADLILLLKE------INSKKEISFPKNIDFIFIGTKSDL-YSTYTEEYDH---LISS 345 ++ ADL+LL+ + ++ + + + I + K+DL + T E IS Sbjct: 300 LKEADLVLLVLNASESLTVQDRQLLEISQETNRIILLNKTDLPEAIETSELPEDLIRISV 359 Query: 346 FTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGL 402 + ++++ +I ++ + + + S+ RH+ + + V L+ ++NE + G+ Sbjct: 360 LKNQNIDKIEERINNLFFENAGLVEQDATYLSNARHISLIEKAVESLQ--AVNEGLELGM 417 Query: 403 --DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D++ +L LG+ITG ++L+ +FS+FC+GK Sbjct: 418 PVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457 >gi|308071639|ref|YP_003873244.1| tRNA modification GTPase trmE [Paenibacillus polymyxa E681] gi|305860918|gb|ADM72706.1| Probable tRNA modification GTPase trmE [Paenibacillus polymyxa E681] Length = 458 Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 151/461 (32%), Positives = 248/461 (53%), Gaps = 32/461 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LDGRILDK 63 +TI A++T I+++R+SGP E + + K P + + +G +D + +K Sbjct: 4 DTIAAIATAVGEGGIAVVRISGPEAVTEVEALFRSKTPLSKAPTHTVHYGHIIDPQSQEK 63 Query: 64 G---LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 L+ V +P SFT ED E HGG+ V +++ L + N+RLA PGEF++RAF N Sbjct: 64 VEEVLVTVMRAPRSFTTEDVVEISTHGGVVAVKRVMD-LLLLQNIRLAEPGEFTKRAFLN 122 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR----SFIEADL 176 G+IDL +AE + DLI S+++ ++++ + G+LS Q I +L H+ + IE ++ Sbjct: 123 GRIDLSQAEGVIDLIRSKSDKAFSVALKQVDGQLS----QNIRRLRHVLVETLAHIEVNI 178 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D+ E DV++F+S + + + +I + + G+I+R G I+G N GKSSL Sbjct: 179 DYPEH-DVESFTSDLIKDKSSQVMTEIDRLLHTAEQGKILREGLTTAIVGRPNVGKSSLL 237 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N LA+ + AIVTDIPGTTRDV+ + + +K+ DTAGIRET D+VE+ G++R+ V Sbjct: 238 NTLAQGERAIVTDIPGTTRDVIEEYVTINSIPLKLLDTAGIRETMDVVERIGVERSRTAV 297 Query: 297 ENADLIL---------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH 341 ADL+L L+++I ++ I +D + L EE Sbjct: 298 SEADLLLIVINANEPLHEDEMALMEQIRGRQAIVIMNKMDLPAQVDRDLLLRYVPEELIV 357 Query: 342 LISSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKD 399 +S EG + L I ++ S K + + S+ RH+ L + + L + ++ Sbjct: 358 PMSVKENEGADRLEQAISNLFFSGKLESADMTYVSNVRHIALLKKARQSLVDAYEAADQF 417 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D+I ++RLA LG+I G + L+D IFS+FC+GK Sbjct: 418 VPIDMIQIDVRLAWEHLGEIVGDTAHDALIDQIFSQFCLGK 458 >gi|294792403|ref|ZP_06757550.1| tRNA modification GTPase TrmE [Veillonella sp. 6_1_27] gi|294456302|gb|EFG24665.1| tRNA modification GTPase TrmE [Veillonella sp. 6_1_27] Length = 461 Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 151/459 (32%), Positives = 256/459 (55%), Gaps = 26/459 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGLD---G 58 +TI A++T + IIR+SG F + + K P + +++Y +D Sbjct: 5 DTIAAIATPPGIGGVGIIRVSGKDSFPIVNSLFKSVGTVPLMDRQNRTIQYGTIVDPMTN 64 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 + +D+ L+++ P S+T ED E HGGI V IL+ L ++R+A GEF++RAF Sbjct: 65 KTIDEVLVLLMKGPHSYTAEDVVEIQCHGGIVPVRQILKLLVNH-DVRMAEAGEFTKRAF 123 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG+IDL +AE++ D+I ++TE L++ + G +SS ++L + + +E +D+ Sbjct: 124 MNGRIDLTQAEAIIDIIEAKTEDSLSLAVSQLDGTVSSFVKDVREQLIAMIAHLEVTIDY 183 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 EE D+++ +S+EV + + + + +S G +IR+G VI+G NAGKSSL NA Sbjct: 184 PEE-DIEDVTSQEVRDQLQPILKAMDDLLSTANTGRLIRDGITTVIVGRPNAGKSSLMNA 242 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L +++ AIVTDIPGTTRD + + +EG +++ DTAGIR+T D VE G++R + Sbjct: 243 LLRENRAIVTDIPGTTRDSIEEYMTVEGISLRLIDTAGIRDTQDTVEALGVERARDYINK 302 Query: 299 ADLILLLKEINS---KKEISFPKNI---DFIFIGTKSDLYSTYTEE--YDH-------LI 343 AD++L + + ++ +EI ++ + I + KSD+ T+E +H I Sbjct: 303 ADIVLCVIDGSTPLNPEEIEILTSVSGLNTIVLLNKSDVAQVVTDENIKEHGTFTAIERI 362 Query: 344 SSFTGEGLEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCG 401 S+ GEG L ++ ++ + K+ ++ S+ RH+ + Q +E A S + D Sbjct: 363 SAKEGEGSAVLSKWVQELVYGGRVKQDNSAMISNVRHISLMEQAKAQVEQALSSIDMDMP 422 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D +A +LR A LG ITG E ++D +FS+FC+GK Sbjct: 423 VDFVATDLRSAWELLGDITGDTIRESMIDELFSRFCLGK 461 >gi|83309100|ref|YP_419364.1| GTPase [Magnetospirillum magneticum AMB-1] gi|82943941|dbj|BAE48805.1| Predicted GTPase [Magnetospirillum magneticum AMB-1] Length = 365 Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 137/369 (37%), Positives = 222/369 (60%), Gaps = 14/369 (3%) Query: 81 AEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETE 140 AE H+HGG AV + L ++ LR A PGEFSRRAF NGK+DL AE++ADL+ +ET Sbjct: 2 AELHLHGGRAVAAALTARLGEL-GLRPAEPGEFSRRAFLNGKLDLTRAEAIADLVDAETA 60 Query: 141 MQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLK 200 QRR ++ + G L+ L W L + +EA +DF++E D+ + ++ + ++ L+ Sbjct: 61 AQRRQALRQLDGGLAGLVEGWRSALVRAMAHLEAVIDFADE-DIPDTLLEQSVGEVRSLR 119 Query: 201 NDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260 ++ H+ + + GE +R+G I ILG NAGKSSL N LA ++ AIV+ GTTRDV+ + Sbjct: 120 REMEVHLDERRNGERLRDGIHITILGAPNAGKSSLLNRLAGREAAIVSAQAGTTRDVIEV 179 Query: 261 DLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL--KEINSKKEISFPK 318 LDL G+ V ++DTAG+R++ +E EG++R ADL L + + + + + Sbjct: 180 HLDLGGWPVIVADTAGLRDSACEIESEGVRRAADRAAKADLRLCVFDGTLYPNLDAATLE 239 Query: 319 NID--FIFIGTKSDLYSTYTEEYDH-----LISSFTGEGLEELINKIKSILSNKFKKLPF 371 ID + + K DL + T + +S+ GEG+++L+ ++ ++ ++F Sbjct: 240 MIDDATLVVLNKRDLMTGETPASINGRPVLTLSAKAGEGVDDLVAELARVVESRFAMGSA 299 Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDI 431 + + +RH +++ V L S + G+++ AE+LRLA+ SLG+ITG VDVE++LD+ Sbjct: 300 PVLTRERHRVAVAEAVAAL---SRFDPGLGIEMAAEDLRLAARSLGRITGRVDVEEILDV 356 Query: 432 IFSKFCIGK 440 IF +FCIGK Sbjct: 357 IFHEFCIGK 365 >gi|282895353|ref|ZP_06303554.1| tRNA modification GTPase TrmE [Raphidiopsis brookii D9] gi|281199604|gb|EFA74465.1| tRNA modification GTPase TrmE [Raphidiopsis brookii D9] Length = 460 Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 152/462 (32%), Positives = 245/462 (53%), Gaps = 39/462 (8%) Query: 7 TIFAVSTGALPS--AISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL-----D 57 TI A++T +P ++ I+R+SG + F K+ + S R +G Sbjct: 10 TIAAIATAVVPQQGSVGIVRVSGDQAMAIAHTLFYTPGKQIW---ESHRILYGFVRQPET 66 Query: 58 GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 +++D+ LL++ +P SFT ED EFH HGGI V +L+ L RLA PGEFS RA Sbjct: 67 KQVVDEALLLIMKAPRSFTREDVVEFHCHGGIIPVQQVLQ-LCLENGARLAQPGEFSLRA 125 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NG++DL +AES+ADL+ +++ + ++ G+ G+L+ ++ I + IEA +D Sbjct: 126 FLNGRLDLTQAESIADLVGAKSPQAAQTALAGLRGKLAQPIRYLRNQCLDILAEIEARID 185 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 F EED+ +++ I + ++S +S + GE++R+G K+ I+G N GKSSL N Sbjct: 186 F--EEDLPPLDQGKIITQINQISVEVSRLLSTKEKGELLRSGLKVAIVGRPNVGKSSLLN 243 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 A ++ D AIVTD+PGTTRD++ L + G +++ DTAGIRET D VEK G++R+ Sbjct: 244 AWSQCDRAIVTDLPGTTRDIVESQLVVGGIPIQVLDTAGIRETVDQVEKIGVERSRQAAN 303 Query: 298 NADLILL---------------LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL 342 +ADL+LL +++ + I ID + DL + + Sbjct: 304 SADLVLLTIDAKAGWQSGDEEIYQQVKHRPLILVINKIDLV-----EDLGGICSPTMEKA 358 Query: 343 ISSFTGE--GLEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQT-VRYLEMASLNEK 398 + + G+ G+E+L I ++ + K + ++R L + + +++ Sbjct: 359 VKTAAGQNRGIEDLEQAILEVVQTQKIVAGDLDLAINQRQAAALIKAQIDLVQVQKTIVD 418 Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LD +LR A +LG+ITG E LLD IFS+FCIGK Sbjct: 419 QLPLDFWTIDLRGAIYALGEITGEEVTESLLDRIFSRFCIGK 460 >gi|257061940|ref|YP_003139828.1| tRNA modification GTPase TrmE [Cyanothece sp. PCC 8802] gi|256592106|gb|ACV02993.1| tRNA modification GTPase TrmE [Cyanothece sp. PCC 8802] Length = 460 Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 152/460 (33%), Positives = 245/460 (53%), Gaps = 33/460 (7%) Query: 6 ETIFAVSTGALPS--AISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL----- 56 ETI A++T +P +I I+RLSG + F ++ + S R +G Sbjct: 9 ETIAAIATAIVPQQGSIGIVRLSGNQAVTIARQLFTAPGQQKW---ESHRILYGYIRHPQ 65 Query: 57 DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 +++D+ LL++ +P S+T ED EFH HGGI V +L+ L +LA PGEF+ R Sbjct: 66 TQQVIDEALLLLMLAPRSYTREDVVEFHCHGGIIPVQQVLQ-LCVEQGAKLAQPGEFTLR 124 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NG+IDL +AES+A L+ + + ++++ G+ G+L+ Q D+ I + +EA + Sbjct: 125 AFLNGRIDLTQAESVAQLVGARSPQASQMALAGLQGKLAQPIRQLRDRCLDILAEVEARI 184 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 DF EED+ ++ + + + + ++ GE++R G K+ I+G N GKSSL Sbjct: 185 DF--EEDLPPLDENSIIEGLQDILTHVQALLATADRGELLRTGLKVAIVGRPNVGKSSLL 242 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 NA + D AIVTD+PGTTRDV+ L + G +++ DTAGIRET D VEK G++R+ Sbjct: 243 NAWSCSDRAIVTDLPGTTRDVVESQLIVGGIPIQVLDTAGIRETADRVEKLGVERSRHVA 302 Query: 297 ENADLILLLKEIN----SKKEISFP--KNIDFIFIGTKSDL----YSTYTEEYDHLISSF 346 ADL+LL + ++ E + ++ I + K DL ++ + ++ + Sbjct: 303 SQADLVLLTIDAQMGWTTEDEAIYQQVQHRPLILVINKIDLGLADSLSFIPQIKQIVKTV 362 Query: 347 TG--EGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS---LNEKDC 400 +G+E+L I S+ S + + ++R L++ LE +N+ Sbjct: 363 AAQNQGIEQLEKAILASVESQNIQAANLDLAINQRQAAVLTRAKIALEQVQETIVNQ--L 420 Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LD +LR A +LG+ITG E +LD IFS+FCIGK Sbjct: 421 PLDFWTIDLRAAIQALGEITGEEITESVLDRIFSRFCIGK 460 >gi|149019612|ref|ZP_01834931.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP23-BS72] gi|147930987|gb|EDK81967.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP23-BS72] gi|301794153|emb|CBW36563.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae INV104] gi|332202879|gb|EGJ16947.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47901] Length = 457 Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 148/460 (32%), Positives = 257/460 (55%), Gaps = 24/460 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55 + E +TI A+ST AI I+RLSG F + + I K K + AS +G Sbjct: 2 ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKD-LNKVASHTLNYGHIIDP 60 Query: 56 LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 L G+++D+ ++ SP++FT ED E + HGGIAV N IL+ LA RLA PGEF++ Sbjct: 61 LTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 119 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG++DL +AE++ D+I ++T+ ++++ + G LS L ++ + + +E + Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNIRQEILNTLAQVEVN 179 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +D+ E +DV+ ++ V + + ++ + + G+I+R G I+G N GKSSL Sbjct: 180 IDYPEYDDVEEATTAVVREKTMEFEQLLTKLLRTARRGKILREGISTAIIGRPNVGKSSL 239 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N L ++D AIVTDI GTTRDV+ +++ G +K+ DTAGIRETDDIVE+ G++R+ Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGVERSKKA 299 Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------I 343 ++ A+L+LL+ + ++ + ++ + I + K+DL T E L I Sbjct: 300 LKEANLVLLVLNASEPLTAQDRQLLEISQDTNRIILLNKTDLPETI--ETSKLPEDVIRI 357 Query: 344 SSFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDC 400 S + ++++ +I ++ + + + S+ RH+ + + V L+ + E Sbjct: 358 SVLKNQNIDKIEERINNLFFENAGLIEQDATYLSNARHISLIEKAVESLQAVNQGLELGM 417 Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+ITG ++L+ +FS+FC+GK Sbjct: 418 PVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457 >gi|116198089|ref|XP_001224856.1| hypothetical protein CHGG_07200 [Chaetomium globosum CBS 148.51] gi|88178479|gb|EAQ85947.1| hypothetical protein CHGG_07200 [Chaetomium globosum CBS 148.51] Length = 496 Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 170/491 (34%), Positives = 248/491 (50%), Gaps = 95/491 (19%) Query: 32 QVCEFICKKKKPF-PRKASLRYFF--GL----DGRILDK-GLLIVFPSPESFTGEDSAEF 83 +V +C K P PR A +R F GL I+D L++ FP P++ TGED E Sbjct: 14 RVYHGLCPNKAPPKPRFAGVRTLFEPGLADLSGANIVDSDALVLYFPGPKTVTGEDVLEL 73 Query: 84 HVHGGIAVVNGILEELAKMPN---LRLANPGEFSRRAFENGKIDLLEAESLADLISSETE 140 HVHGG A V +L + + P+ +R A PGEF+RR+F NG++DL + ESL D +++ETE Sbjct: 74 HVHGGPATVKAVLSAVRRCPSSTEIRYAGPGEFTRRSFLNGRLDLAQIESLGDTLAAETE 133 Query: 141 MQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNF--SSKEVLNDILF 198 QRR ++ G SG L Y W D+L R IEA +DFSE+ Q+F S E+L ++ Sbjct: 134 HQRRAAVRGNSGTLGKTYDSWRDQLLLGRGEIEALIDFSED---QHFDESPAELLTNVTR 190 Query: 199 LKNDISSHISQGKLG----EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254 L DI I KLG E++RNG +I +LG NAGKSSL N + ++ +IV+ GTT Sbjct: 191 LTEDILHSIGLHKLGSQRSELLRNGIRIALLGPPNAGKSSLMNQIVGREASIVSAEAGTT 250 Query: 255 RDVLTIDLDLEGYLVKISDTAGIR---------------ETDDIVEKEGIKRTFLEVENA 299 RD++ LD+ GYL +DTAGIR T +E+EGI+R + ++ Sbjct: 251 RDIVEASLDIRGYLCSFADTAGIRTKTSESLGHHDGTAASTIGAIEQEGIRRARQKALDS 310 Query: 300 DLILLLKEINS-----------------------------KKEISFPKNIDFIFIGTKSD 330 D+I++L + + K +I P++++ + D Sbjct: 311 DVIIVLASVEATESGNHRISYDLETLQLAAGAQQCLVAVNKTDIVSPESLELLI----QD 366 Query: 331 LYSTYTEEYDHL-------ISSFTGEGLEEL--INKIKSILSNKFKKLPFSIPSHKRHLY 381 S+ + D L IS GL + I+++ IL+ F L S+P +HL Sbjct: 367 FKSSVLADIDGLSGQEPLTISCKAAAGLTDAGGIHELTEILAQSFASL-TSLPDDMQHLL 425 Query: 382 H--------LSQTVRYLE--MASLNEKDC--GLDII--AENLRLASVSLGKITG---CVD 424 LS+ R+L MA + D DI+ AE+LRLA + L ITG D Sbjct: 426 GVTERQSQLLSECERHLGDFMAEAKKSDSYDEPDIVLAAEHLRLAGLRLASITGRGESGD 485 Query: 425 VEQLLDIIFSK 435 VE++L +IF K Sbjct: 486 VEEVLGVIFEK 496 >gi|310644871|ref|YP_003949630.1| tRNA modification gtpase mnme [Paenibacillus polymyxa SC2] gi|309249822|gb|ADO59389.1| tRNA modification GTPase mnmE [Paenibacillus polymyxa SC2] Length = 458 Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 151/461 (32%), Positives = 249/461 (54%), Gaps = 32/461 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LDGRILDK 63 +TI A++T I+++R+SGP E + + K P + + +G +D + +K Sbjct: 4 DTIAAIATAVGEGGIAVVRVSGPEAVTEVEALFRSKTPLSKVPTHTVHYGHIIDPQSQEK 63 Query: 64 G---LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 L+ V +P SFT ED E HGG+ V +++ L + N+RLA PGEF++RAF N Sbjct: 64 VEEVLVTVMRAPRSFTTEDVVEISTHGGVVAVKRVMD-LLLLQNIRLAEPGEFTKRAFLN 122 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR----SFIEADL 176 G+IDL +AE + DLI S+++ ++++ + G+LS Q I +L H+ + IE ++ Sbjct: 123 GRIDLSQAEGVIDLIRSKSDKAFSMALKQVDGQLS----QNIRRLRHVLVETLAHIEVNI 178 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D+ E DV++F+S+ + + + +I + + G+I+R G I+G N GKSSL Sbjct: 179 DYPEH-DVESFTSELIKDKSSQVMAEIDRLLHTAEQGKILREGLTTAIVGRPNVGKSSLL 237 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N LA+ + AIVTDIPGTTRDV+ + + +K+ DTAGIRET D+VE+ G++R+ V Sbjct: 238 NTLAQGERAIVTDIPGTTRDVIEEYVTINNIPLKLLDTAGIRETMDVVERIGVERSRTAV 297 Query: 297 ENADLIL---------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH 341 ADL+L L+++I ++ I +D + L EE Sbjct: 298 SEADLLLIVINANEPLHEDEMALMEQIRGRQAIVIMNKMDLPAQIDRDLLLRYVPEELIV 357 Query: 342 LISSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKD 399 +S EG + L I ++ S K + + S+ RH+ L + + L + ++ Sbjct: 358 PMSVKENEGADRLEQAISNLFFSGKLESADMTYVSNVRHIALLKKARQSLVDAYEAADQL 417 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D+I ++RLA LG+I G + L+D IFS+FC+GK Sbjct: 418 VPIDMIQIDVRLAWEQLGEIVGDTAHDALIDQIFSQFCLGK 458 >gi|307706532|ref|ZP_07643339.1| tRNA modification GTPase TrmE [Streptococcus mitis SK321] gi|307617987|gb|EFN97147.1| tRNA modification GTPase TrmE [Streptococcus mitis SK321] Length = 457 Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 150/460 (32%), Positives = 261/460 (56%), Gaps = 24/460 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55 + E +TI A+ST AI I+RLSG F + + I K K + AS +G Sbjct: 2 ITREFDTIAAISTPLGEGAIGIVRLSGTESFAIAQKIFKGKD-LNKVASHTLNYGHIIDP 60 Query: 56 LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 L G+++D+ ++ SP++FT ED E + HGGIAV N IL+ LA RLA PGEF++ Sbjct: 61 LTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 119 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG++DL +AE++ D+I ++T+ ++++ + G LS L ++ + + +E + Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSELINNTRQEILNTLAQVEVN 179 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +D+ E +DV+ ++ V + + +++ + + G+I+R G I+G N GKSSL Sbjct: 180 IDYPEYDDVEEATTAVVREKTIEFEQLLTNLLRTARRGKILREGISTAIIGRPNVGKSSL 239 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N L ++D AIVTDI GTTRDV+ +++ G +K+ DTAGIRETDDIVE+ G++R+ Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGVERSKKA 299 Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDL-YSTYTEEYDH---LISS 345 ++ ADL+LL+ + ++ + + + I + K+DL + T E IS Sbjct: 300 LKEADLVLLVLNASEPLTAQDRQLLEISQETNRIILLNKTDLPEAIETSELPEDVIRISV 359 Query: 346 FTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGL 402 + ++++ +I ++ + + + S+ RH+ + + V L+ ++NE + G+ Sbjct: 360 LKNQNIDKIEERINNLFFENAGLVEQDATYLSNARHISLIEKAVESLQ--AVNEGLELGM 417 Query: 403 --DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D++ +L LG+ITG ++L+ +FS+FC+GK Sbjct: 418 PVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457 >gi|152977683|ref|YP_001377200.1| tRNA modification GTPase TrmE [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|189036194|sp|A7GVP7|MNME_BACCN RecName: Full=tRNA modification GTPase mnmE gi|152026435|gb|ABS24205.1| tRNA modification GTPase TrmE [Bacillus cytotoxicus NVH 391-98] Length = 458 Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 148/458 (32%), Positives = 256/458 (55%), Gaps = 22/458 (4%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLD---GR 59 E +TI A+ST AI+I+R+SG + I K K + ++ Y +D + Sbjct: 2 EFDTIAAISTALGEGAIAIVRVSGEDAIEKVNRIFKGKDLTAVSSHTIHYGHIVDLDTNQ 61 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 ++++ ++ + +P++FT ED E + HGG+ VN +L+ L +RLA PGEF++RAF Sbjct: 62 VIEEVMVSIMRAPKTFTREDIVEVNCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAFL 120 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NG+IDL +AE++ DLI ++T+ +++ M G LS L G+ ++ + +E ++D+ Sbjct: 121 NGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGRLRQEILETLAHVEVNIDYP 180 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 E +DV+ + + ++ ++N+I + K G+I+R G I+G N GKSSL N+L Sbjct: 181 EYDDVEEMTHRILIEKATHVQNEIEKILETSKQGKILREGIATAIIGRPNVGKSSLLNSL 240 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 ++ AIVTDI GTTRDV+ +++ G +++ DTAGIRET+DIVE+ G++R+ + A Sbjct: 241 VQEKKAIVTDIAGTTRDVIEEYVNVRGVPLRLIDTAGIRETEDIVEQIGVERSKEMMSQA 300 Query: 300 DLILLL----KEINSKKEISFP--KNIDFIFIGTKSDL--------YSTYTEEYDHLISS 345 DL+L++ + + ++ E F + DFI I K+DL + E + +S Sbjct: 301 DLVLIVVNYSEPLTNEDEELFRAVQGKDFIVIVNKTDLPQKIEMERVTELASEKRVITTS 360 Query: 346 FTGE-GLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGL 402 E G++EL I + + + S+ RH+ L+Q + + + + E + Sbjct: 361 LIEEKGVDELEKAIADLFFEGTIESADMTYVSNARHIGLLTQARKTIGDAIAAIENGVPI 420 Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D++ +L LG+ITG E L+D +FS+FC+GK Sbjct: 421 DMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458 >gi|313904719|ref|ZP_07838093.1| tRNA modification GTPase TrmE [Eubacterium cellulosolvens 6] gi|313470512|gb|EFR65840.1| tRNA modification GTPase TrmE [Eubacterium cellulosolvens 6] Length = 460 Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 152/457 (33%), Positives = 250/457 (54%), Gaps = 25/457 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFG---LDGRI 60 +TI A+ST PS I I+RLSGP ++ + ++ K K + +G +G + Sbjct: 7 DTIVAISTAMAPSGIGIVRLSGPDAIKIADRVYVNPKGKKLSGQNGYTIHYGNVCENGEV 66 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+ L ++ +P S+TGED+ EF HGG+ ILE + R A PGEFSRRAF N Sbjct: 67 IDETLAMLMRAPHSYTGEDTVEFDCHGGVLATKRILEAIVH-AGARPAEPGEFSRRAFLN 125 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G+IDL +AE++ D+I+++ + R + + G +S KL H + IEA LD E Sbjct: 126 GRIDLTQAEAVMDIIAAKNDHALRSAQHQLKGSVSGKISDIRQKLLHETAHIEAALDDPE 185 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 + + +++ I+ + + + G+ + G K VI+G NAGKSSL N L Sbjct: 186 HMSLDGYV-EDMRQVIMAQRKALERLLESADSGKFMTEGIKTVIVGKPNAGKSSLLNLLI 244 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRD+L ++++G +++ DTAGIR+ D++EK G++R +V++AD Sbjct: 245 GEEKAIVTDIAGTTRDILEEQINIKGITLRLLDTAGIRDASDVIEKIGVERAKEQVKDAD 304 Query: 301 LILLLK------EINSKKEISFPKNIDFIFIGTKSDLYSTYT-EEYDHL-------ISSF 346 L+L + + N + + K+ F+ I K+DL + T EE + +S+ Sbjct: 305 LVLYVVDGSVALDDNDFEIMKLIKDRKFVVILNKNDLSTIVTSEELEQATGTPVISMSAK 364 Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIP-SHKRHLYHLSQTVRYLEMA--SLNEKDCGLD 403 EG++EL ++I+ + + I ++ RH + + +R L + S+++ D D Sbjct: 365 HSEGIDELEDQIEKMFFHGGISFNDEIYITNVRHKTCIEEAIRSLGLVLQSMDD-DMPED 423 Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + +L A SLG+ITG E L++ IFS FC+GK Sbjct: 424 FWSIDLMGACDSLGQITGETTSEDLVNEIFSSFCMGK 460 >gi|145607203|ref|XP_361596.2| hypothetical protein MGG_04070 [Magnaporthe oryzae 70-15] gi|145014795|gb|EDJ99363.1| hypothetical protein MGG_04070 [Magnaporthe oryzae 70-15] Length = 525 Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 125/321 (38%), Positives = 191/321 (59%), Gaps = 30/321 (9%) Query: 18 SAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGLDGR-----ILDKGLLIV-FP 70 + I++IR+SGP C ++ +C KK P PR A++R + + R +LD G L++ FP Sbjct: 11 AGIAVIRISGPDCLEIYRRLCPGKKPPKPRYAAVRTLYAPENRPGTPDVLDSGALVLYFP 70 Query: 71 SPESFTGEDSAEFHVHGGIAVVNGILEELAKMP----NLRLANPGEFSRRAFENGKIDLL 126 P++ TGED E H HGG A V +L + + +R A+PGEF+RRAF N ++DL Sbjct: 71 GPKTVTGEDVLELHTHGGRATVKSVLSAIPQCAPAASRVRYADPGEFTRRAFFNDRLDLA 130 Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186 + ESL D + +ETE QRR ++ G SG L + Y W ++L R+ IEA +DFSE+ Q+ Sbjct: 131 QVESLGDALDAETEQQRRAAVRGSSGRLGASYDNWRERLLLARAEIEALIDFSED---QH 187 Query: 187 F--SSKEVLNDILFLKNDISSHISQGKLG----EIIRNGYKIVILGHSNAGKSSLFNALA 240 F S +E+L ++ DI + I+ ++G E++R G +I +LG N GKSSL N + Sbjct: 188 FDESPRELLQSVVGQVRDILALIALHEMGSKRSELLRKGIRIALLGPPNVGKSSLMNLIV 247 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--ETDD--------IVEKEGIK 290 ++ +IV+ GTTRD++ LD+ GYL +DTAG R ET D IVEKEGI+ Sbjct: 248 GREASIVSTEAGTTRDIVEASLDIRGYLCTFADTAGFRSEETTDASSPAEIGIVEKEGIR 307 Query: 291 RTFLEVENADLILLLKEINSK 311 R + +D++++L + + Sbjct: 308 RARSKAIGSDIVVVLASVEKQ 328 Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 3/48 (6%) Query: 396 NEKDCGLDIIAENLRLASVSLGKITG---CVDVEQLLDIIFSKFCIGK 440 +E+D + + AE+LR A+ +L +ITG D E++L +IF KFC+GK Sbjct: 478 HEEDIDVVLAAEHLRYAANALAEITGRGGYGDTEEVLGVIFEKFCVGK 525 >gi|289209758|ref|YP_003461824.1| tRNA modification GTPase TrmE [Thioalkalivibrio sp. K90mix] gi|288945389|gb|ADC73088.1| tRNA modification GTPase TrmE [Thioalkalivibrio sp. K90mix] Length = 437 Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 150/440 (34%), Positives = 233/440 (52%), Gaps = 12/440 (2%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASL-RYFFGLDGRILDKG 64 +TI AV+T I ++RLSGP + + + + PR+A R G +D G Sbjct: 5 DTIVAVATPPGVGGIGVVRLSGPQSLVIARRLTGRDRLRPRQAHYGRLTDPASGETIDDG 64 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 L++ FP+P S+TGED E HG ++ ++ + R A PGEF+ +AF NG++D Sbjct: 65 LILYFPAPHSYTGEDVVELQGHGSPVLLEALVAAAVGL-GARRARPGEFTEQAFLNGRLD 123 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ADLI ++T RL+ + G L++ + +R IEA++DF E D+ Sbjct: 124 LAQAEAVADLIHAQTTQAARLARSSLDGALAAELEPVSRAIRDMRVIIEAEIDFGET-DL 182 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 ++ ++ ++ L I + + + + G ++ ++G N GKSSL N LA+ +V Sbjct: 183 ESEAAPDIARRTEVLHTTILALLERLRPARYFAQGLRLALVGAPNVGKSSLMNRLAESEV 242 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIVTD PGTTRDVL + + G V++ DTAG+ +DD VEK G++R ADLIL Sbjct: 243 AIVTDRPGTTRDVLRSPIAIHGIPVELIDTAGLHASDDPVEKIGMQRAREAATGADLILD 302 Query: 305 LKEINSKK---EISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSI 361 L+++ + E+ P I + + K D + +IS+ TG G++EL I Sbjct: 303 LRDLTRPEAVPELEAPPEIPRLTVWNKQDCVADSRSTEGIVISARTGAGIDELKQAIVER 362 Query: 362 L-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKIT 420 L +++ + FS+ RHL L +L E D+IAE LRLA +L + Sbjct: 363 LGASEGGQQRFSV--RARHLDGLRLAALHL---GRIEASAAPDLIAEELRLAEAALDALL 417 Query: 421 GCVDVEQLLDIIFSKFCIGK 440 G D E LL IF+ FCIGK Sbjct: 418 GRQDHEALLGEIFAGFCIGK 437 >gi|302390791|ref|YP_003826612.1| tRNA modification GTPase trmE [Thermosediminibacter oceani DSM 16646] gi|302201419|gb|ADL08989.1| tRNA modification GTPase trmE [Thermosediminibacter oceani DSM 16646] Length = 462 Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 154/466 (33%), Positives = 249/466 (53%), Gaps = 30/466 (6%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK---PFPRKASLRYFFGL- 56 M+ +TI A+ST +I I+R+SG F++ I + KK P K Y + Sbjct: 1 MSMTGDTIAAISTPLGEGSIGIVRISGEDSFRIASEIFRPKKNIDPSEMKPRTMYLGSIV 60 Query: 57 ---DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEF 113 G ++D+ LL+ + +P ++T E+ E + HGG V ILE + R+A PGEF Sbjct: 61 DPGSGEVIDEVLLVKYKAPFTYTRENMVEINCHGGFTVQRRILEVVLGR-GARVAEPGEF 119 Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173 ++RAF NG+IDL +AE++ D+I ++T+ +++ + G LS + ++ I + IE Sbjct: 120 TKRAFLNGRIDLSQAEAVIDIIRAKTDRALNVAVNQLKGGLSERIREVRQRILRIIAHIE 179 Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233 A++DF E+ D+ + DI ++ ++ + + + G+I+R G VILG N GKS Sbjct: 180 ANIDFPED-DIPEADPDTIREDIRGIRVELEELLKKAQAGKIMREGLSTVILGRPNVGKS 238 Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293 SL N+L ++ AIVTDIPGTTRD++ L++ G VKI DTAGIRET D VEK G++R Sbjct: 239 SLLNSLLREKRAIVTDIPGTTRDIIEEYLNINGIPVKIVDTAGIRETCDAVEKIGVERAL 298 Query: 294 LEVENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFT 347 ++ A+L+LL+ + + + + K+ I + K+DL + D + S+F Sbjct: 299 ESLKEAELVLLMLDASDELREEDRAIMELVKDKFVIVVLNKTDLPEKLS--VDEVKSAFP 356 Query: 348 G-----------EGLEELINKIKSILSNKFKKLPFS-IPSHKRHLYHLSQTVRYLEMA-S 394 G +G+EEL I ++ + + I + RH + V LE A S Sbjct: 357 GKPLIRVSALREKGIEELKEAIYRAVTEEIGPVDEGVIVTRARHSQAVKNAVEALERAES 416 Query: 395 LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++++A +R A LG+ITG E +++ IF FCIGK Sbjct: 417 ALSSGIPMEMVAMEVREAWERLGEITGDTVREDVVNAIFENFCIGK 462 >gi|312876169|ref|ZP_07736156.1| tRNA modification GTPase TrmE [Caldicellulosiruptor lactoaceticus 6A] gi|311796984|gb|EFR13326.1| tRNA modification GTPase TrmE [Caldicellulosiruptor lactoaceticus 6A] Length = 455 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 164/459 (35%), Positives = 249/459 (54%), Gaps = 27/459 (5%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-----PFP-RKASLRYFFGLD 57 E +TI A+ST I I+RLSG F + E + + +K P R A+L + D Sbjct: 2 EFDTIAAISTPIGTGGIGIVRLSGKDAFDIAEKLIRSRKYKSIKDIPARYAALVDVYDGD 61 Query: 58 GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 +D+ +LI F SP S+TGED E HGG+ V+ ILE K R A PGEF++RA Sbjct: 62 -EFVDEAILIKFKSPHSYTGEDIVEIQSHGGMVVLKRILEAAIK-NGARHAMPGEFTKRA 119 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NG+IDL +AE++ D+I+S+T + ++ + + + G LS + L ++ + IEA +D Sbjct: 120 FLNGRIDLSQAEAVIDIINSKTRLLQQNAAKQLKGMLSQRIEEISQLLLNLVASIEASID 179 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 FSE E V E+L+ + I+ + + G+ I++G VI+G N GKSSL N Sbjct: 180 FSEHE-VDEVPHTEILSTVDAALQKINKLLKSYETGKAIKSGIYTVIVGRPNVGKSSLLN 238 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 L K++ AIVTDIPGTTRDV+ LD+EG + ++DTAG+R+T+D+VEK G+K+T +E Sbjct: 239 RLLKEEKAIVTDIPGTTRDVIEEVLDIEGIPIILADTAGVRKTEDVVEKIGVKKTLESIE 298 Query: 298 NADLILLLKE--------------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI 343 ADL+L + E I K+ I ID + D+ + +E + Sbjct: 299 RADLVLFMIESSGILQEDLEIFETIKDKRFIVLVNKIDKEVKVSHEDIKRIFGKE--GIF 356 Query: 344 SSFTGEGLEELINK--IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401 S + EL+ K +L + + ++ RH L + ++L A N Sbjct: 357 ISVEHDKNLELVEKAITNEVLDKDIEAFDSVLITNLRHKELLLKAKKFLLSAKENLDCVP 416 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LDI++ +++ A SL +ITG E ++D IFS FCIGK Sbjct: 417 LDILSIDIKNALESLYQITGKNVTEDMVDRIFSMFCIGK 455 >gi|261410105|ref|YP_003246346.1| tRNA modification GTPase TrmE [Paenibacillus sp. Y412MC10] gi|261286568|gb|ACX68539.1| tRNA modification GTPase TrmE [Paenibacillus sp. Y412MC10] Length = 458 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 154/463 (33%), Positives = 252/463 (54%), Gaps = 36/463 (7%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD---GRI 60 +TI A+ST I+IIR+SGP + E I K K ++ S +G +D G Sbjct: 4 DTIAAISTAVGEGGIAIIRVSGPDSVREVERIFKSKNKLTQEESHTVHYGHIVDPKTGEN 63 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 L++ L+ V +P SFT ED E HGG+ V +++ L ++ N+RLA PGEF++RAF N Sbjct: 64 LEEVLVTVMRAPRSFTTEDVVEISAHGGVISVKRVMDLLLQL-NIRLAEPGEFTKRAFLN 122 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G+IDL +AE++ DLI S+++ ++++ + G LS + L + IE ++D+ E Sbjct: 123 GRIDLSQAEAVMDLIRSKSDRAFSVALKQVEGTLSRKINELRHTLVETLAHIEVNIDYPE 182 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 DV++ +S+ + + +I + + G+I+R G I+G N GKSSL N LA Sbjct: 183 H-DVESLTSEFIKEKSKLVMGEIDKLLKTAQEGKILREGITTAIVGRPNVGKSSLLNTLA 241 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 + + AIVTDIPGTTRDV+ + + +K+ DTAGIRET D+VE+ G++R+ V AD Sbjct: 242 QDNRAIVTDIPGTTRDVIEEFVTINNIPLKLLDTAGIRETMDVVEQIGVERSKHAVNEAD 301 Query: 301 LIL---------------LLKEINSKK------EISFPKNIDFIFIGTKSDLYSTYTEEY 339 LIL L+++I ++ ++ P N+D L+ Y +E Sbjct: 302 LILLVLNASEPLHQDELELMEQIRGRQCIVIMNKMDLPSNLDLDI------LHRYYPDEL 355 Query: 340 DHLISSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNE 397 +S EG++ L I ++ S + + + S+ RH+ L ++ + L+ A E Sbjct: 356 IVPMSVKAQEGIDRLEEAISNLFFSGQIEGGDLTYVSNVRHIALLKKSKQSLQDAYDAAE 415 Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + +D+I ++R+A L +I G + L+D IFS+FC+GK Sbjct: 416 QLIPIDMIQIDVRMAWEQLSEILGEAVGDSLIDQIFSQFCLGK 458 >gi|329925110|ref|ZP_08280054.1| tRNA modification GTPase TrmE [Paenibacillus sp. HGF5] gi|328940229|gb|EGG36561.1| tRNA modification GTPase TrmE [Paenibacillus sp. HGF5] Length = 458 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 154/463 (33%), Positives = 251/463 (54%), Gaps = 36/463 (7%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD---GRI 60 +TI A+ST I+IIR+SGP Q E I K K + S +G +D G Sbjct: 4 DTIAAISTAVGEGGIAIIRVSGPDSVQEVERIFKSKNKLTQVESHTVHYGHIVDPKTGEN 63 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 L++ L+ V +P SFT ED E HGG+ V +++ L ++ N+RLA PGEF++RAF N Sbjct: 64 LEEVLVTVMRAPRSFTTEDVVEISAHGGVISVKRVMDLLLQL-NIRLAEPGEFTKRAFLN 122 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G+IDL +AE++ DLI S+++ ++++ + G LS + L + IE ++D+ E Sbjct: 123 GRIDLSQAEAVMDLIRSKSDRAFSVALKQVEGTLSRKINELRHTLVETLAHIEVNIDYPE 182 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 DV++ +S+ + + +I + + G+I+R G I+G N GKSSL N LA Sbjct: 183 H-DVESLTSEFIKEKSKLVMGEIDKLLKTAQEGKILREGITTAIVGRPNVGKSSLLNTLA 241 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 + + AIVTDIPGTTRDV+ + + +K+ DTAGIRET D+VE+ G++R+ V AD Sbjct: 242 QDNRAIVTDIPGTTRDVIEEFVTINNIPLKLLDTAGIRETMDVVEQIGVERSKHAVNEAD 301 Query: 301 LIL---------------LLKEINSKK------EISFPKNIDFIFIGTKSDLYSTYTEEY 339 LIL L+++I ++ ++ P N+D L+ Y +E Sbjct: 302 LILLVLNASEPLHQDELELMEQIRGRQCIVIMNKMDLPSNLDLDI------LHRYYPDEL 355 Query: 340 DHLISSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNE 397 +S EG++ L I ++ S + + + S+ RH+ L ++ + L+ A + Sbjct: 356 IVPMSVKAQEGIDRLEEAISNLFFSGQIEGGDLTYVSNVRHIALLKKSKQSLQDAYDAAD 415 Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + +D+I ++R+A L +I G + L+D IFS+FC+GK Sbjct: 416 QLIPIDMIQIDVRMAWEQLSEILGEAVGDSLIDQIFSQFCLGK 458 >gi|90194128|gb|ABD92625.1| ThdF [Mannheimia glucosida] Length = 428 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 141/423 (33%), Positives = 233/423 (55%), Gaps = 27/423 (6%) Query: 20 ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGED 79 + I+R+SGP V + + K P PR A+ F DG +LD+G+ + F +P SFTGED Sbjct: 8 VGILRVSGPLAETVAQAVLGKTLP-PRIANYLPFKDEDGTVLDQGIALFFKAPNSFTGED 66 Query: 80 SAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET 139 E HGG +++ +L+ + ++ LR+A GEFS +AF N K+DL +AE++ADLI + + Sbjct: 67 VLELQGHGGQVILDLLLKRILQVKGLRIARAGEFSEQAFLNDKLDLAQAEAIADLIDATS 126 Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LNDI 196 E R +++ + GE S+ +D + ++R+++EA +DF +EE + + ++ LN+I Sbjct: 127 EQAARSALKSLQGEFSNKINALVDSVIYLRTYVEAAIDFPDEE-IDFLADGKIEAKLNEI 185 Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 + + + QG I+R G K+VI G NAGKSSL NALA ++ AIVT+I GTTRD Sbjct: 186 IAQLDGVRREAKQGS---ILREGMKVVIAGRPNAGKSSLLNALAGREAAIVTNIAGTTRD 242 Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316 VL + ++G + I DTAG+R+ D VE+ GI+R + E+ AD +LL+ + ++ F Sbjct: 243 VLREHIHIDGMPLHIIDTAGLRDASDEVERIGIQRAWEEIAQADHVLLMIDSTEQQADQF 302 Query: 317 -----------PKNIDFIFIGTKSDLYS-----TYTEEYDHL-ISSFTGEGLEELINKIK 359 P N+ I K DL +++ + +S+ T G++ L +K Sbjct: 303 RQEWAEFLAKLPANMPVTVIRNKVDLSGEQEGLIQVDDFTMIRLSAQTKVGVDLLREHLK 362 Query: 360 SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAENLRLASVSLGK 418 + + + +RHL L +LE + + +++AE LR+ +L + Sbjct: 363 KSMGYQ-SSTEGGFLARRRHLQALETAAEHLERGHIQLTQFLAGELLAEELRMVQNALSE 421 Query: 419 ITG 421 ITG Sbjct: 422 ITG 424 >gi|315644290|ref|ZP_07897460.1| tRNA modification GTPase TrmE [Paenibacillus vortex V453] gi|315280665|gb|EFU43954.1| tRNA modification GTPase TrmE [Paenibacillus vortex V453] Length = 458 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 159/457 (34%), Positives = 248/457 (54%), Gaps = 24/457 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG-----LDGRI 60 +TI A+ST I+IIR+SGP Q E I K K + S +G G Sbjct: 4 DTIAAISTAVGEGGIAIIRVSGPDAVQEVERIFKSKNKLTQVDSHTVHYGHIADPKTGEN 63 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 L++ L+ V +P SFT ED E HGG+ V +++ L + N+RLA PGEF++RAF N Sbjct: 64 LEEVLVTVMRAPRSFTTEDVVEISAHGGVISVKRVMDLLLLL-NIRLAEPGEFTKRAFLN 122 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G+IDL +AE++ DLI S+++ ++++ + G LS + L + IE ++D+ E Sbjct: 123 GRIDLSQAEAVMDLIRSKSDRAFSVALKQVEGTLSRKINELRHTLVETLAHIEVNIDYPE 182 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 DV++ +S+ + + ++I + + G+I+R G I+G N GKSSL N LA Sbjct: 183 H-DVESLTSEFIKEKSQHVMHEIDKLLKTAQEGKILREGITTAIIGRPNVGKSSLLNTLA 241 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 + + AIVTDIPGTTRDV+ + + +K+ DTAGIRET D+VE+ G++R+ V AD Sbjct: 242 QDNRAIVTDIPGTTRDVIEEFVTINNIPLKLLDTAGIRETMDVVEQIGVERSKHAVNEAD 301 Query: 301 LILLL---KEINSKKEISFPKNI---DFIFIGTKSDLYST---------YTEEYDHLISS 345 LILL+ E + E+ + I I I K DL S Y EE +S Sbjct: 302 LILLVLNASEPLHQDELELMEQIRGRQCIVIMNKMDLPSQLDLDILHRYYPEELIVPMSV 361 Query: 346 FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLD 403 EG++ L I ++ S + + + S+ RH+ L ++ + L+ A E+ +D Sbjct: 362 KAEEGIDRLEEAISNLFFSGQIEGGDLTYVSNVRHIALLKKSKQSLQDAYDAAEQLIPID 421 Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +I ++R+A L +I G + L+D IFS+FC+GK Sbjct: 422 MIQIDVRMAWEQLSEILGEAVGDSLIDQIFSQFCLGK 458 >gi|297566657|ref|YP_003685629.1| tRNA modification GTPase TrmE [Meiothermus silvanus DSM 9946] gi|296851106|gb|ADH64121.1| tRNA modification GTPase TrmE [Meiothermus silvanus DSM 9946] Length = 436 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 144/441 (32%), Positives = 231/441 (52%), Gaps = 18/441 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----LDGRIL 61 E I A++T A+ I+RLSG +V + + K P + R+ +G G +L Sbjct: 8 EPIAAIATPPGKGAVGIVRLSGVGALEVAAKVWRGKDPRKLEGG-RFTYGTIVDARGEVL 66 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121 D+ L++VF +P S+TG+D+ E HG AV+ +L+ L + RLA PGEF+ RA+ NG Sbjct: 67 DEALMLVFRAPHSYTGQDAVELQTHGSPAVLRQVLQALLEA-GARLAQPGEFTLRAYLNG 125 Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181 ++DL +AE++ L+ SE++ RR ++ G++ LS ++L + + I+A LD+ EE Sbjct: 126 RMDLAQAEAVLALVESESDAARRQALRGLARSLSQQIEGMAERLYDLLAHIQAWLDYPEE 185 Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 E+ + + ++ ++ G I G ++ ++G NAGKSSL NAL Sbjct: 186 ----GVEPAEIQTTVSEVLAEVERLLATAPAGRIAHKGARLALVGAPNAGKSSLLNALLG 241 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 + AIVT IPGTTRD L L++ G + DTAG+R+TDD VE+ G++R + ADL Sbjct: 242 YERAIVTPIPGTTRDYLEAPLEIAGVPITAVDTAGVRQTDDPVERSGVERALKIAQEADL 301 Query: 302 ILLLKEINSKKEISFPKNIDFIF-IGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKS 360 +L L + + + TK+DL + + +SS TG GLE L I Sbjct: 302 VLYLVDAAEPPPTPPDLPWERALKVATKADLPPAWEDAEFIRVSSQTGFGLEALRKAIHD 361 Query: 361 ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGLDIIAENLRLASVSLGKI 419 L + + I S++RH L + ++L A +D GL + A A +L +I Sbjct: 362 KLIGQASEGEIWI-SNERHTQALYEARQHLLEALTAPQDLAGLSVQA-----ALDALNQI 415 Query: 420 TGCVDVEQLLDIIFSKFCIGK 440 G E+++ +F FC+GK Sbjct: 416 LGKDVSEEVIARVFRNFCVGK 436 >gi|33860749|ref|NP_892310.1| tRNA modification GTPase TrmE [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|46577387|sp|Q7V395|MNME_PROMP RecName: Full=tRNA modification GTPase mnmE gi|33633691|emb|CAE18648.1| putative thiophen / furan oxidation protein [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 460 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 168/456 (36%), Positives = 252/456 (55%), Gaps = 37/456 (8%) Query: 10 AVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG-----LDGRILDKG 64 AVS G I++IR+SG C+ I + K + + S R F G L+ + +D+ Sbjct: 17 AVSLG--KGGIAVIRVSGEEAINSCKNIVETKSKYAWE-SHRVFHGFIKDNLENKFIDEI 73 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEEL-AKMPNLRLANPGEFSRRAFENGKI 123 L+ V SP SFTGED E H HGG+ VVN ++E L + +R+ANPGEFS+RAF NGKI Sbjct: 74 LITVMHSPNSFTGEDIVELHCHGGVIVVNKVIETLLSNNTGVRIANPGEFSQRAFLNGKI 133 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL +AES+ LI+++ ++ G+ GE+ + L S IEA +DF EED Sbjct: 134 DLTQAESINQLINAKNLKSAEIAFNGVKGEIKKKIDIIKNDLIEQLSEIEARVDF--EED 191 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 F+ + +I +K I I K G I NG I ++G +N GKSSL N L+KK+ Sbjct: 192 FSEFNYNDFSRNIKIIKEKIKILIENSKRGAHIHNGISIALIGKTNVGKSSLLNLLSKKE 251 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303 AIVT IPGTTRD++ ++L ++ +KI DTAGIRETD+ +E GI ++F ++N+D I+ Sbjct: 252 KAIVTSIPGTTRDIIEVNLTIKDIPIKIIDTAGIRETDEYIENIGIDKSFEMIQNSDYII 311 Query: 304 LLKEI------NSKKEIS-FPKNIDFIFIGTKSDLYSTYTEEYDHLISSF-----TGEGL 351 L + + +K IS P+ +G K DL + +L +S EG Sbjct: 312 YLYSLEEGLNKDDEKIISKIPQEKLITILGNKKDLIDSKKVNKKNLSNSVLMSIKNDEGE 371 Query: 352 EELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD------CGLDI 404 +EL+ KI K S +F+ + + ++R + +L+ ++ +LN+ D D+ Sbjct: 372 KELVEKIVKKCGSKEFENIDIFL--NERQISNLTDCLK-----NLNDTDPIIANKLPFDL 424 Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++ +R +L +ITG E LL+ IFSKFCIGK Sbjct: 425 LSIEVRDGIKNLSRITGQELTEDLLNNIFSKFCIGK 460 >gi|163943164|ref|YP_001648048.1| tRNA modification GTPase TrmE [Bacillus weihenstephanensis KBAB4] gi|229136309|ref|ZP_04265056.1| tRNA modification GTPase mnmE [Bacillus cereus BDRD-ST196] gi|205829111|sp|A9VTM0|MNME_BACWK RecName: Full=tRNA modification GTPase mnmE gi|163865361|gb|ABY46420.1| tRNA modification GTPase TrmE [Bacillus weihenstephanensis KBAB4] gi|228647181|gb|EEL03269.1| tRNA modification GTPase mnmE [Bacillus cereus BDRD-ST196] Length = 458 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 152/459 (33%), Positives = 255/459 (55%), Gaps = 24/459 (5%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----LD-G 58 E +TI A+ST AI+I+R+SG + + I K K + +S +G LD Sbjct: 2 EFDTIAAISTALGEGAIAIVRVSGDDAIEKVDRIFKGKD-LTQVSSHTIHYGHIVDLDTN 60 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 +++++ ++ + +P +FT E+ E + HGG+ VN +L+ L +RLA PGEF++RAF Sbjct: 61 QVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAF 119 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG+IDL +AE++ DLI ++T+ +++ M G LS L G ++ + IE ++D+ Sbjct: 120 LNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGHLRQEILETLAHIEVNIDY 179 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E +DV+ + ++ ++ +I+ + K G+I+R G I+G N GKSSL N+ Sbjct: 180 PEYDDVEEMTHNILIEKATHVRAEIAKILETSKQGKILREGISTAIIGRPNVGKSSLLNS 239 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L ++ AIVTDI GTTRDV+ +++ G +K+ DTAGIRET+DIVE+ G++R+ + Sbjct: 240 LVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDIVERIGVERSKEMMSQ 299 Query: 299 ADLILLL----KEINSKKEISFP--KNIDFIFIGTKSDLYSTYTEEY-------DHLISS 345 ADL+L++ + + ++ E F + DFI I K+DL E + +I++ Sbjct: 300 ADLVLIVVNYSEALTNEDEDLFRAVQGKDFIVIVNKTDLPQEIDMERVTDLAVGNRVITT 359 Query: 346 --FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCG 401 +G++EL I + + S+ RH+ L+Q R + A E Sbjct: 360 SLIEEQGIDELEKAIADLFFEGTIDSADMTYVSNARHIGLLTQAGRTINDAIEAIENGVP 419 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L A LG+ITG E L+D +FS+FC+GK Sbjct: 420 IDMVQIDLTRAWEILGEITGDTVHESLIDQLFSQFCLGK 458 >gi|315637643|ref|ZP_07892849.1| tRNA modification GTPase TrmE [Arcobacter butzleri JV22] gi|315478097|gb|EFU68824.1| tRNA modification GTPase TrmE [Arcobacter butzleri JV22] Length = 446 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 150/457 (32%), Positives = 248/457 (54%), Gaps = 33/457 (7%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63 E +TI A++T +ISI+R+SG ++ I KK R A+L + I+D+ Sbjct: 3 ENDTIVAIATANGIGSISIVRVSGAKALEIATKISKKNNFQARLATLSTIYDSKNEIIDE 62 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 L+I F +P SFTGED EF HGG+A+ N I++E+ RLANPGEFS+RAF N KI Sbjct: 63 ALVIYFKAPFSFTGEDVVEFQCHGGVAISNMIVDEVLN-AGARLANPGEFSKRAFFNNKI 121 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL +AE+++ +I + + +L + GEL++ + + L + ++ E +D++EE D Sbjct: 122 DLTKAEAISKIIEARSADAVKLLARQLKGELTNFVDEIREDLLFMLAYTEVSIDYAEE-D 180 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 + +++ N + + +S+ + + E + G+K+ I+G N GKSSL N L D Sbjct: 181 LPTDIYEQIENKMQKISLKLSNTLEASRRREGMIEGFKVAIIGKPNVGKSSLLNKLLNFD 240 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303 AI++DI GTTRD + + + +++KI DTAGIR+ D++EK GI+++ + AD+++ Sbjct: 241 RAIISDIAGTTRDTIEESVRIGTHIIKIVDTAGIRDASDVIEKIGIEKSIQAINEADIVI 300 Query: 304 ------------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY-DHLIS 344 L+KE NS KE+ I + KSDL + + + D I Sbjct: 301 ALFDNSKICDDEDKKILDLIKE-NSDKEV--------IVVLNKSDLQNQFDKNVLDSFIE 351 Query: 345 SFTGEGLEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLD 403 T E + LI +++ IL SN F ++ S KR + + T+ + +A K L+ Sbjct: 352 LSTKEDINPLIKELEEILDSNTFGD-DITLVS-KRQVLAVENTLYNIGLAKEPLKSGELE 409 Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A + A + IT D +++LD++F +FC+GK Sbjct: 410 FFAHFITQALEDISSITRPYDNDEMLDVMFGEFCLGK 446 >gi|332687269|ref|YP_004457043.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Melissococcus plutonius ATCC 35311] gi|332371278|dbj|BAK22234.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Melissococcus plutonius ATCC 35311] Length = 466 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 151/463 (32%), Positives = 261/463 (56%), Gaps = 29/463 (6%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK---KKKPFPRKASLRYFFGLD--- 57 E +TI A+ST AISI+RLSG ++ + I + KK ++ Y +D Sbjct: 7 ELDTIAAISTPPGEGAISIVRLSGKDAVKIADKIYQAGNKKLKDVATHTIHYGHIIDPKK 66 Query: 58 GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 +++D+ ++ V +P++FT ED E + HGG+ VVN +L+ L RLA PGEF++RA Sbjct: 67 NKVVDEVMVSVMRAPKTFTCEDVVEINCHGGMIVVNKLLQ-LILHEGARLAEPGEFTKRA 125 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NG+IDL +AE++ DLI S+T+ +++ + G LS+L ++ + +E ++D Sbjct: 126 FLNGRIDLSQAEAVMDLIRSKTDKAMSMALNQLDGSLSNLIRSLRQEILETLAQVEVNID 185 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 + E +DV+ +++ +L +K I + + G+I+R G VI+G N GKSSL N Sbjct: 186 YPEYDDVEELTTRLLLEKATSVKKQIQQLLMTAQQGKILREGLSTVIVGRPNVGKSSLLN 245 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 L K++ AIVTD+ GTTRD + ++L G +K+ DTAGI ET+DIVEK G++++ ++ Sbjct: 246 HLLKEEKAIVTDVAGTTRDTIEEYINLRGIPLKLVDTAGIHETEDIVEKIGVEKSRQALQ 305 Query: 298 NADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDL--------YSTYTEEYDH 341 ADLI+L+ +N +E++ + I + K DL ++ + + Sbjct: 306 TADLIVLV--LNQSEELTNEDQQLLEMTGGLKRIILLNKMDLPNQLEKEKLRSFLSDQEE 363 Query: 342 L--ISSFTGEGLEELINKIKSILSN-KFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNE 397 L +S + EG+++L +I ++ N + + + S+ RH+Y L Q + L E+ E Sbjct: 364 LLPVSVLSSEGIDKLEIEIANLFFNGQTEAKDATYLSNTRHIYLLEQALSALDEVIHGIE 423 Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 K+ +D++ ++ LG+I G ++L+ +FS+FC+GK Sbjct: 424 KEMPVDLVQIDMTRCWDFLGEIVGDSVQDELITQLFSQFCLGK 466 >gi|189499228|ref|YP_001958698.1| tRNA modification GTPase TrmE [Chlorobium phaeobacteroides BS1] gi|189494669|gb|ACE03217.1| tRNA modification GTPase TrmE [Chlorobium phaeobacteroides BS1] Length = 473 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 157/466 (33%), Positives = 251/466 (53%), Gaps = 31/466 (6%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFI-CKKKKP---FPRKASLRYFFG--LD 57 + E I AV+T A++++R+SG F + + + K + P FG D Sbjct: 10 QGEPIAAVATPVGVGALAVVRMSGEGVFSIADRVFTKVRSPETSLADSPGYTAHFGKLYD 69 Query: 58 G-RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 G R++D+ +++VF SP+SFT ED E HGG V +L+ L RLA PGEF+RR Sbjct: 70 GDRMIDEVIVLVFRSPDSFTVEDMVEITCHGGPVVTKHVLKLLLD-NGCRLAEPGEFTRR 128 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NG+IDLL+AE++ ++I + +E R ++ MSG LS G ++L H + +E +L Sbjct: 129 AFLNGRIDLLQAEAIGEMIHARSESAYRTAVNQMSGGLSGRLGTLREQLLHSCALLELEL 188 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 DFSEE DV+ S +E+ + L+ ++ + + G ++R G I+G NAGKS+L Sbjct: 189 DFSEE-DVEFQSREELSGQVENLQQEVDKLVQSYQHGRLLREGVATAIIGRPNAGKSTLL 247 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 NAL ++ AIV+ +PGTTRD + E + +++DTAG+RE + +E EGI+R++ ++ Sbjct: 248 NALLGEERAIVSHMPGTTRDYIEECFIYEKTMFRLTDTAGLREAAEEIEHEGIRRSYEKI 307 Query: 297 ENADLILLLKEINS---KKEISF-------PKNIDFIFIGTKSDLYSTYTEEYDHL---- 342 ADLIL L +I + ++E S +I + + K+D E + + Sbjct: 308 AEADLILYLLDIGASDYEEETSTVTELRQKHPDIQLLVVANKTDTTEDSAERSEKVAEKT 367 Query: 343 ------ISSFTGEGLEELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMA-S 394 IS+ +GL+ L + S++ K S+ + RH L L A Sbjct: 368 GCQVLGISALKEDGLDRLKAGMSSMVEGLDKLHDASVLVTSMRHYEALRNASDALRNARE 427 Query: 395 LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L + ++IA LR A +G+ITG V E++L++IF +FCIGK Sbjct: 428 LIDAQSETELIAFELRSALDYVGEITGKVVNEEVLNVIFGQFCIGK 473 >gi|87123548|ref|ZP_01079399.1| tRNA modification GTPase TrmE [Synechococcus sp. RS9917] gi|86169268|gb|EAQ70524.1| tRNA modification GTPase TrmE [Synechococcus sp. RS9917] Length = 460 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 145/442 (32%), Positives = 236/442 (53%), Gaps = 27/442 (6%) Query: 20 ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----LDGR-ILDKGLLIVFPSPES 74 I++IRLSGP+ I + P + S R +G DG+ +D+ L++ +P S Sbjct: 25 IAVIRLSGPAAQPAVRAITRIPGYQPWE-SHRVLYGHVLAADGQERIDEVLVLPMLAPRS 83 Query: 75 FTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADL 134 FT ED E H HGG+ V +L + + P +R A PGEFS+RA NG++DL AE+++DL Sbjct: 84 FTAEDVVEIHCHGGVMAVQRVLARVLEQPGVRRALPGEFSQRAVLNGRLDLTRAEAISDL 143 Query: 135 ISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194 +++ ++ +L+M G+ G + ++L S +EA +DF EED+ +L Sbjct: 144 VAARSQRAAQLAMAGVDGGIQRRTTALRERLLDQLSELEARVDF--EEDLPPLDGAALLA 201 Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254 ++ ++ ++ ++ G+ +R+G ++ ++G N GKSSL N L++++ AIVTD+PGTT Sbjct: 202 ELQAVRAELLQLVADGERSAALRSGLRVALVGRPNVGKSSLLNRLSRRERAIVTDLPGTT 261 Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI------ 308 RD+L ++ LEG + + DTAGIR T D VE+ GI R+ + +ADL+LLL ++ Sbjct: 262 RDLLESEIVLEGVPITLLDTAGIRATTDAVEQLGIARSHDALASADLVLLLFDLSEGWTA 321 Query: 309 -NSKKEISFPKNIDFIFIGTKSDLYST------YTEEYDHLISSFTGEGLEELINKIKS- 360 + P+ + + +G K+DL + D +S+ TG G ELI + + Sbjct: 322 DDQALRQRIPEEVPHLLVGNKADLSPSSGAGLGAAVAADVCLSASTGAGEAELIQALLAR 381 Query: 361 --ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGK 418 L++ L + R ++A+ + D +LR A SLG Sbjct: 382 CGALTDGSLLLALNQRQADLAQQAAEALARSEQVAA---EGLPWDFWTIDLRQAIQSLGA 438 Query: 419 ITGCVDVEQLLDIIFSKFCIGK 440 ITG E +LD IFS+FCIGK Sbjct: 439 ITGEELSESVLDRIFSRFCIGK 460 >gi|291548774|emb|CBL25036.1| tRNA modification GTPase trmE [Ruminococcus torques L2-14] Length = 462 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 161/468 (34%), Positives = 251/468 (53%), Gaps = 40/468 (8%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LDG-RIL 61 ++TI A+STG S I I+R+SG ++ + + K K+ + +G +DG + Sbjct: 3 QDTIAAISTGMTNSGIGIVRISGSEALEIADRVYKGKETITEVPTHTIHYGHVMDGDETV 62 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121 D+ L++V P +FTGED+ E + HGG VV+ +LE + K R A PGEF++RAF NG Sbjct: 63 DEVLVMVMRGPRTFTGEDTVEINCHGGTYVVSRVLETVLK-AGARPAEPGEFTKRAFLNG 121 Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181 K+DL +AE++ D+I+SE E + S+ + G + + + +K+ + +FIE LD E Sbjct: 122 KMDLSQAEAVIDVITSENEYALQSSISQLKGSVKNRIKEIREKIIYHTAFIETALDDPEH 181 Query: 182 EDVQNFSS--KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 V + KE +++ + + I G I++ G + VILG NAGKSSL N L Sbjct: 182 ISVDGYGEVLKEAAEEVI---DQLKELIDSSDDGRIMKEGIQTVILGKPNAGKSSLLNIL 238 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 A D AIVTDI GTTRDVL + L+G + I DTAGIR+TDDIVEK G+ + + A Sbjct: 239 AGHDRAIVTDIEGTTRDVLEEQIRLQGLTLNIIDTAGIRQTDDIVEKMGVDKAKEYAKEA 298 Query: 300 DLILLLKEINSKKEISFPKNIDFIF------IGTKSDLYSTYTEEYDH------------ 341 DLI+ + + + + + K D I+ + KSDL + TEE Sbjct: 299 DLIIYVVDASRNLDENDEKIFDLIYDKRTVILLNKSDLDTVVTEEMIRERISQKGVQKQI 358 Query: 342 ---LISSFTGEGLEELINKIKSILSNK----FKKLPFSIPSHKRHLYHLSQTVRYLEMAS 394 IS+ +G++EL N +K++ +++ + K L + ++++ + Sbjct: 359 PVIAISAKEEQGIKELENTVKAMFLKGDLSFNEEVYITNARQKNALVNARESMKKV---- 414 Query: 395 LNEKDCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + D G+ D + +L A SLG ITG E L++ IFSKFC+GK Sbjct: 415 IFSIDAGMPEDFYSIDLMDAYESLGNITGESIGEDLVNEIFSKFCMGK 462 >gi|313887681|ref|ZP_07821363.1| tRNA modification GTPase TrmE [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846290|gb|EFR33669.1| tRNA modification GTPase TrmE [Peptoniphilus harei ACS-146-V-Sch2b] Length = 459 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 155/463 (33%), Positives = 259/463 (55%), Gaps = 27/463 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFG--L 56 M + +TI A+ST + I+I+R+SG + + F+ K + ++ +G Sbjct: 1 MANLNDTIAAISTAIGEAGIAIVRMSGDDSVNIIDEIFVSASGKKMAEAENRKFLYGHIA 60 Query: 57 DG-RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 DG +++D+ L++ P S+T ED E H HGG+ V IL L RLA GEF++ Sbjct: 61 DGDKLIDEVLVVKMKGPHSYTAEDIVEIHCHGGVVSVKRILN-LILSKGARLAEKGEFTK 119 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 R F NG+IDL +AE++ D+I ++T++ + + +SG LS + + D+L +++ I A+ Sbjct: 120 RGFLNGRIDLTQAEAVIDMIKAKTDISFDMGLNQLSGALSEVLNKLKDELVSMQALIVAN 179 Query: 176 LDFSEEEDVQNFSSKEVL--NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233 +DF +E D+++ + +++ +D + K D + + K ++R+G VILG N GKS Sbjct: 180 IDFPDE-DIEDAAYHDLMERSDKILEKMD--NLLDNSKNSRLLRDGINTVILGKPNVGKS 236 Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293 SL N L K D AIVTDI GTTRD++ ++L+G L+KI+DTAGIRETDD VEK G+ Sbjct: 237 SLLNGLLKYDRAIVTDIAGTTRDIIEDYINLDGVLLKITDTAGIRETDDEVEKIGVNIAR 296 Query: 294 LEVENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEY-------D 340 +++ ADL++ + +I + ++ ++ K+ I I K DL ++E D Sbjct: 297 EKLKEADLVIAIFDISRDFDKDDEEILNLIKDKKHITILNKDDLDQKISDEEIEKYFKDD 356 Query: 341 HL-ISSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVR-YLEMASLNE 397 +L +S E ++++ N I + + + SI S+ RH+ L + + LE+ + Sbjct: 357 YLRLSVMENESVKKIENLIIDLFFDGELQISSDSILSNIRHINALKEAKKALLEVNESLK 416 Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 K LD+I +L + +ITG + E +LD +FS FCIGK Sbjct: 417 KKVFLDLIEVDLENVIGHISEITGTITTEDILDRVFSDFCIGK 459 >gi|70984128|ref|XP_747583.1| mitochondrial GTPase (Mss1) [Aspergillus fumigatus Af293] gi|66845210|gb|EAL85545.1| mitochondrial GTPase (Mss1), putative [Aspergillus fumigatus Af293] gi|159122369|gb|EDP47490.1| mitochondrial GTPase (Mss1), putative [Aspergillus fumigatus A1163] Length = 604 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 124/326 (38%), Positives = 188/326 (57%), Gaps = 29/326 (8%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRK--ASLRYFFGLD-----GR 59 TI+A+ST +AI+++R+SG +C Q+ +C P PR A++R + Sbjct: 66 TIYALSTAPGRAAIAVVRVSGSACVQIYRALCPSA-PLPRARVAAVRTLYDPTQEPSANT 124 Query: 60 ILDKGLLIV-FPSPESFTGEDSAEFHVHGGIAVVNGILEELAKM----PNLRLANPGEFS 114 +LD G L++ FP P++ TGED E H+HGG A+V +L +A+ +R A PGEF+ Sbjct: 125 VLDAGALVLYFPGPKTVTGEDVLELHLHGGPAIVKSVLAAIARSNRPESTVRYAEPGEFT 184 Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174 RRAF N ++DL + E+L D ++++TE QRRL++ G S LS Y W +L + R +EA Sbjct: 185 RRAFMNNRLDLPQIEALGDTLTADTEQQRRLAVRGASDALSRRYESWRQQLLYARGELEA 244 Query: 175 DLDFSEE----EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNA 230 +DFSE+ E ++F + V + L+ + HI GE++RNG KI +LG NA Sbjct: 245 LIDFSEDQYFDESPEDFV-RSVAGQVRALQTQLRLHIENASKGELLRNGIKIALLGAPNA 303 Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI------- 283 GKSSL N + K+ AIV+ GTTRD++ + +DL G+ K+ D AGIR Sbjct: 304 GKSSLLNRIVGKEAAIVSTEEGTTRDIVDVGVDLGGWYCKLGDMAGIRSEKSTSTGQGTA 363 Query: 284 ----VEKEGIKRTFLEVENADLILLL 305 VEKEGI+R +D+++L+ Sbjct: 364 IIGAVEKEGIRRARARALESDVVVLV 389 >gi|33864338|ref|NP_895898.1| tRNA modification GTPase TrmE [Prochlorococcus marinus str. MIT 9313] gi|46577389|sp|Q7V491|MNME_PROMM RecName: Full=tRNA modification GTPase mnmE gi|33641118|emb|CAE22248.1| putative thiophen / furan oxidation protein [Prochlorococcus marinus str. MIT 9313] Length = 470 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 150/459 (32%), Positives = 247/459 (53%), Gaps = 50/459 (10%) Query: 19 AISIIRLSGPSCFQVCEFICKKKKPFPRK---ASLRYFFG--LD--GR-ILDKGLLIVFP 70 I+++RLSGP+ E + + P + S R +G +D G+ +D+ L+++ Sbjct: 25 GIAVVRLSGPAA----EVVGRSVVSIPGQQLWVSHRVLYGHVMDESGKERIDEVLVLLMK 80 Query: 71 SPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAES 130 P SFTGED E H HGG+ V +LE + P++R A PGEFS+RA NG++DL +AE+ Sbjct: 81 GPRSFTGEDVVEIHCHGGLMAVQRVLERVLAQPHVRRALPGEFSQRAVLNGRLDLTQAEA 140 Query: 131 LADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186 +++L+++ + +L+M G+ G ++SL + +D+L S +EA +DF EED+ Sbjct: 141 ISELVAARSRRAAQLAMTGVDGGIQRRITSLRERLLDQL----SELEARVDF--EEDLPP 194 Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246 E+L ++ ++ ++ + K G+++R G ++ ++G N GKSSL N L++++ AI Sbjct: 195 LDGAELLLELQCVRRELEQLVEDAKRGDVLRQGLQVALVGRPNVGKSSLLNRLSRRERAI 254 Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA------- 299 VTD+PGTTRDVL ++ LEG + + DTAGIR T D +E+ GI R+ + A Sbjct: 255 VTDLPGTTRDVLESEIVLEGVPITLVDTAGIRATQDALEQLGIDRSHQALAAADVAVLVF 314 Query: 300 DLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT---------------EEYDHLIS 344 DL L ++ P ++ + +G K+DL + D ++S Sbjct: 315 DLSLGWTADDAALLAQIPDDLPRLLVGNKADLQPASMAASLMVASLGNEVDGKTVDVMLS 374 Query: 345 SFTGEGLEELINKI-KSILSNKFKKLPFSIPSHKRH--LYHLSQTVRYLEMASLNEKDCG 401 + TG+G E LI + K+ +++ + L ++ ++ R E A E Sbjct: 375 ALTGQGEEALIKAVLKTCGASEAQGLVVALNQRQQDLAAAAAIALARTQEAA---EHQLP 431 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D +LR A SLG+ITG E +LD IFS+FCIGK Sbjct: 432 WDFWTIDLRQAISSLGEITGEEITEAVLDRIFSRFCIGK 470 >gi|324514013|gb|ADY45734.1| tRNA modification GTPase mnmE [Ascaris suum] Length = 471 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 155/463 (33%), Positives = 244/463 (52%), Gaps = 42/463 (9%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66 TIFA+S+G+LPSAI+IIR+SG + + K++K R F + G ++D+ + Sbjct: 22 TIFALSSGSLPSAIAIIRVSGEESRMCLQRLTKRQKFKARYMFYSSLFDVGGELIDRAMA 81 Query: 67 IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR-----RAFENG 121 + P P +FTGED+AE +VHG AVVN + E L N+R A GEF++ RAF N Sbjct: 82 VFLPGPSTFTGEDTAEIYVHGSRAVVNCVCETLNHFENVRPAKAGEFTKRLRFARAFFNS 141 Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181 K+D+ +SL+ L+S+ET+ QR L++ S ++ + L + +EA +DF+ Sbjct: 142 KLDIHGVQSLSYLLSAETQRQRMLAVR--SNQIGLAVSSIRESLVQLACSLEAGIDFA-- 197 Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 +DV F L+ + + +++ + + G +I +G ++V+LG +N GKSSL N +A+ Sbjct: 198 DDVP-FDWDSFLSHVRDVTSELKMIEQRAQKGCLIIDGIRVVMLGQTNVGKSSLLNCIAE 256 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 +DVAIV+++ GTTRD L ++L V +DTAGIR D +E E I RT A Sbjct: 257 RDVAIVSEVEGTTRDALEARIELASVPVIFTDTAGIRSAHDFLEAESISRTIARAAEAH- 315 Query: 302 ILLLKEINSKKEISFPKNID-------------FIFIGTKSDLYSTYTEEYDHLISSFTG 348 +LL +++ K + +D + + K DL + H++SS Sbjct: 316 -VLLPVVDASKCVDIAAEVDVLLRQCHCEDASRVVVVCNKIDLIPAHMH---HVVSSLPW 371 Query: 349 EGL-EELINK--IKSILSNKFKKLPFSIP--------SHKRHLYHLSQTVRYLEMASLNE 397 + + IN+ I +IL +++ P S R LS V LE + Sbjct: 372 KVVFTSCINRTGITNILEAVKEQIAALCPDEGDDALLSRYRQRILLSDAVSLLEQVQ-ST 430 Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D L AE +R AS +G+I+G + E++LD IFS FCIGK Sbjct: 431 SDAAL--AAEYVREASALIGEISGAIVNEEILDRIFSSFCIGK 471 >gi|117927030|ref|YP_867647.1| tRNA modification GTPase TrmE [Magnetococcus sp. MC-1] gi|205415778|sp|A0LE48|MNME_MAGSM RecName: Full=tRNA modification GTPase mnmE gi|117610786|gb|ABK46241.1| tRNA modification GTPase trmE [Magnetococcus sp. MC-1] Length = 468 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 155/469 (33%), Positives = 245/469 (52%), Gaps = 39/469 (8%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQ-VCEFICKKK------KPFPRKASLRYFFG 55 HE++ I ++T S ++++RLSGP V ++ K F + R F Sbjct: 8 HEQDCIIGMATPPGTSGVAVLRLSGPGVLSLVVPYLYTPKGEKVAESGFKPRVMRRLNF- 66 Query: 56 LDGRI----LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPG 111 +D + LD L++ FP+P SF+GED E H HG VV I+E L +R A+PG Sbjct: 67 IDPQAPDVPLDHMLVVHFPNPHSFSGEDMVELHGHGAPVVVKRIMEVLVAH-GVRPADPG 125 Query: 112 EFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSF 171 EFS+RAF N K+DL++AE+L LI + + R + M+G LS D L + Sbjct: 126 EFSKRAFFNNKMDLVQAEALMGLIEATSLRAAREASRQMTGTLSEHLMALKDHLVLTYAH 185 Query: 172 IEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAG 231 +EA LDFS+E D++ S +L+ + ++ I + +LG +R+G+++ I+G N G Sbjct: 186 LEAALDFSDE-DIEPESEGGLLDRLAYVHAGIKKMLGTAELGRQMRDGFELAIVGRPNVG 244 Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR 291 KSSLFNAL+ +D AIVTD+ GTTRD+ +L++ G + + DTAG+RE+DD VE+ GI+R Sbjct: 245 KSSLFNALSGEDRAIVTDLAGTTRDLNESNLEIHGLPILLVDTAGLRESDDPVERIGIER 304 Query: 292 TFLEVENADLIL---------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336 + VE AD I+ LL+ + +K + +D + G + + Sbjct: 305 AWQRVERADGIVFVAEAQLGVTLEDKALLQRLPKEKALWVWNKLDQLE-GALPECLQDWP 363 Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLP-----FSIPSHKRHLYHLSQTVRYLE 391 EE +S TGEGLE ++ I + + ++LP I ++ V E Sbjct: 364 EEQICGVSCHTGEGLESVVAHIVA----RMEQLPEHGEGVVIMQLRQQQTLQQAIVLIEE 419 Query: 392 MASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + L+++AE L + L ++ G D E +L ++FS FC+GK Sbjct: 420 AQEMLANGQWLELVAEPLTRSIDQLTQLMGNTDYEDVLGMVFSSFCVGK 468 >gi|309775110|ref|ZP_07670122.1| tRNA modification GTPase TrmE [Erysipelotrichaceae bacterium 3_1_53] gi|308917065|gb|EFP62793.1| tRNA modification GTPase TrmE [Erysipelotrichaceae bacterium 3_1_53] Length = 443 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 149/448 (33%), Positives = 253/448 (56%), Gaps = 21/448 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD---GRILD 62 +TI A+ST A+ AISIIR+SG + + I + ++ Y + D ++D Sbjct: 4 DTIAAISTAAVDGAISIIRMSGTDALSIADSILNFNIKEKKSHTISYGYVYDQEHDELID 63 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 + L+ VF +P++FT ED E + HGG + IL L RLANPGEF++RAF NG+ Sbjct: 64 EVLVSVFHAPKTFTCEDIVEINCHGGSFITKKILR-LCLAHGARLANPGEFTQRAFLNGR 122 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 IDL +AE++ D+I ++T R++M+G+ G + L + +L I + IE ++D+ E + Sbjct: 123 IDLTQAEAVNDMIQADTNENARMAMQGIRGSVKKLLDPLLQELLDIIANIEVNIDYPEYD 182 Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 DV+ S++ + I + + + + G++++ G K I+G N GKSSL NAL ++ Sbjct: 183 DVEQLSTEIIQPKARAWMKRIQNILDRAQSGQLLKEGIKTAIVGKPNVGKSSLLNALLEE 242 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 + AIVTDI GTTRD++ + L+G + + DTAGIRET D+VE+ GI+R+ + +A L+ Sbjct: 243 EKAIVTDIAGTTRDIVEGHIHLQGLTLNLIDTAGIRETSDVVEQIGIQRSLKAITDAQLV 302 Query: 303 LLLKEINS-------KKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL-ISSFTGEGLEEL 354 +++ + NS ++ + ++ I + K+D+ ++ D + I++ GE +E L Sbjct: 303 IVVLD-NSRALDEQDRELLKLTRDKTRIIVYNKTDV----SKRSDGICIAAAKGE-IEAL 356 Query: 355 INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG--LDIIAENLRLA 412 I +I + L + ++R + + + + A L + G LDI+ +++ A Sbjct: 357 IAEIHKLFDRHQLVLQEPLLHNERQIALMMKAENSMHQA-LEAMEAGMELDIVEIDIQNA 415 Query: 413 SVSLGKITGCVDVEQLLDIIFSKFCIGK 440 SL +I G V E LLD +FS FC+GK Sbjct: 416 YTSLKEILGEVHREDLLDTLFSNFCLGK 443 >gi|229014650|ref|ZP_04171764.1| tRNA modification GTPase mnmE [Bacillus mycoides DSM 2048] gi|228746661|gb|EEL96550.1| tRNA modification GTPase mnmE [Bacillus mycoides DSM 2048] Length = 458 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 152/459 (33%), Positives = 255/459 (55%), Gaps = 24/459 (5%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----LD-G 58 E +TI A+ST AI+I+R+SG + + I K K + +S +G LD Sbjct: 2 EFDTIAAISTALGEGAIAIVRVSGDDAIEKVDRIFKGKD-LTQVSSHTIHYGHIVDLDTN 60 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 +++++ ++ + +P +FT E+ E + HGG+ VN +L+ L +RLA PGEF++RAF Sbjct: 61 QVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAF 119 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG+IDL +AE++ DLI ++T+ +++ M G LS L G ++ + IE ++D+ Sbjct: 120 LNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGHLRQEILETLAHIEVNIDY 179 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E +DV+ + ++ ++ +I+ + K G+I+R G I+G N GKSSL N+ Sbjct: 180 PEYDDVEEMTHNILIEKATHVRAEIAKILETSKQGKILREGISTAIIGRPNVGKSSLLNS 239 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L ++ AIVTDI GTTRDV+ +++ G +K+ DTAGIRET+DIVE+ G++R+ + Sbjct: 240 LVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDIVERIGVERSKEMMSQ 299 Query: 299 ADLILLL----KEINSKKEISFP--KNIDFIFIGTKSDLYSTYTEEY-------DHLISS 345 ADL+L++ + + ++ E F + DFI I K+DL E + +I++ Sbjct: 300 ADLVLIVVNYSEALTNEDEDLFRAVQGKDFIVIVNKTDLPQGIDMERVTDLAVGNRVITT 359 Query: 346 --FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCG 401 +G++EL I + + S+ RH+ L+Q R + A E Sbjct: 360 SLIEEQGIDELEKAIADLFFEGTIDSADMTYVSNARHIGLLTQAGRTINDAIEAIENGVP 419 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L A LG+ITG E L+D +FS+FC+GK Sbjct: 420 IDMVQIDLTRAWEILGEITGDTVHESLIDQLFSQFCLGK 458 >gi|229170187|ref|ZP_04297873.1| tRNA modification GTPase mnmE [Bacillus cereus AH621] gi|228613288|gb|EEK70427.1| tRNA modification GTPase mnmE [Bacillus cereus AH621] Length = 458 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 152/459 (33%), Positives = 255/459 (55%), Gaps = 24/459 (5%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----LD-G 58 E +TI A+ST AI+I+R+SG + + I K K + +S +G LD Sbjct: 2 EFDTIAAISTALGEGAIAIVRVSGDDAIEKVDRIFKGKD-LTQVSSHTIHYGHIVDLDTN 60 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 +++++ ++ + +P +FT E+ E + HGG+ VN +L+ L +RLA PGEF++RAF Sbjct: 61 QVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAF 119 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG+IDL +AE++ DLI ++T+ +++ M G LS L G ++ + IE ++D+ Sbjct: 120 LNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGHLRQEILETLAHIEVNIDY 179 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E +DV+ + ++ ++ +I+ + K G+I+R G I+G N GKSSL N+ Sbjct: 180 PEYDDVEEMTHNILIEKATHVRAEIAKILETSKQGKILREGISTAIIGRPNVGKSSLLNS 239 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L ++ AIVTDI GTTRDV+ +++ G +K+ DTAGIRET+DIVE+ G++R+ + Sbjct: 240 LVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDIVERIGVERSKEMMSQ 299 Query: 299 ADLILLL----KEINSKKEISFP--KNIDFIFIGTKSDLYSTYTEEY-------DHLISS 345 ADL+L++ + + ++ E F + DFI I K+DL E + +I++ Sbjct: 300 ADLVLIVVNYSEALTNEDEDLFHAVQGKDFIVIVNKTDLPQEIDMERVTDLAVGNRVITT 359 Query: 346 --FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCG 401 +G++EL I + + S+ RH+ L+Q R + A E Sbjct: 360 SLIEEQGIDELEKAIADLFFEGTIDSADMTYVSNARHIGLLTQAGRTINDAIEAIENGVP 419 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L A LG+ITG E L+D +FS+FC+GK Sbjct: 420 IDMVQIDLTRAWEILGEITGDTVHESLIDQLFSQFCLGK 458 >gi|281418695|ref|ZP_06249714.1| tRNA modification GTPase TrmE [Clostridium thermocellum JW20] gi|281407779|gb|EFB38038.1| tRNA modification GTPase TrmE [Clostridium thermocellum JW20] Length = 459 Score = 221 bits (562), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 158/462 (34%), Positives = 249/462 (53%), Gaps = 28/462 (6%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----D 57 ++++TI A+ST + IIR+SG F++ E I + KK F S +G + Sbjct: 2 YKEDTIAAISTPHGAGGVGIIRISGDKAFEIAERIFRGKKDFKLIRSHTINYGKIINPEN 61 Query: 58 GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 G +LD+ LL P++FT ED E + HGG+ V+ ILE L RLA PGEF++RA Sbjct: 62 GAVLDEVLLSKMEKPKTFTREDVVEINCHGGMVVLKNILE-LCIKEGARLAEPGEFTKRA 120 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NG+IDL +AE++ DLI+S+T + ++ + G+LS KL + + IE +D Sbjct: 121 FLNGRIDLSQAEAVIDLINSKTNESSKAAISQLEGKLSRKIKDARSKLIELLAHIEVTVD 180 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 + E D++ + V +I +K + + + G IIR G VI+G N GKSSL N Sbjct: 181 YPEH-DIEEITGNMVYEEIGKIKEKLCDIVKSFERGRIIREGIDAVIIGKPNVGKSSLLN 239 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 L+ K AIVTDIPGTTRD++ +++ G ++I DTAGIRET+D+VEK G+++T ++ Sbjct: 240 ELSGKSKAIVTDIPGTTRDIIEEYININGIPLRIIDTAGIRETEDVVEKIGVEKTHRAID 299 Query: 298 NADLILLLKEINSKKEISFPKNIDFIFIGTKS--------DLYS-TYTEEYDHLI----- 343 ADL++++ I++K+ + N +G K DL E + L+ Sbjct: 300 EADLVIMM--IDAKRGMDEDDNRILTMLGDKKLIILINKIDLVDEKQINEIESLLKGRKC 357 Query: 344 ---SSFTGEGLEELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMASLN-EK 398 S G G+ EL N I + + I ++ RH + + +E A + + Sbjct: 358 IRTSVKEGTGISELENAITELFVQGEVSVNEEILLTNIRHKNLIDMAISSIEKAMESIDG 417 Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LD+++ ++ A+ LG+ITG E ++ IFSKFC+GK Sbjct: 418 SMPLDLVSIDITDAADYLGQITGESVSEDVMHEIFSKFCLGK 459 >gi|125974850|ref|YP_001038760.1| tRNA modification GTPase TrmE [Clostridium thermocellum ATCC 27405] gi|256003893|ref|ZP_05428880.1| tRNA modification GTPase TrmE [Clostridium thermocellum DSM 2360] gi|205829145|sp|A3DHY8|MNME_CLOTH RecName: Full=tRNA modification GTPase mnmE gi|125715075|gb|ABN53567.1| tRNA modification GTPase trmE [Clostridium thermocellum ATCC 27405] gi|255992231|gb|EEU02326.1| tRNA modification GTPase TrmE [Clostridium thermocellum DSM 2360] gi|316941972|gb|ADU76006.1| tRNA modification GTPase TrmE [Clostridium thermocellum DSM 1313] Length = 459 Score = 221 bits (562), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 158/462 (34%), Positives = 249/462 (53%), Gaps = 28/462 (6%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----D 57 ++++TI A+ST + IIR+SG F++ E I + KK F S +G + Sbjct: 2 YKEDTIAAISTPHGAGGVGIIRISGDKAFEIAERIFRGKKDFKLIRSHTINYGKIVNPEN 61 Query: 58 GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 G +LD+ LL P++FT ED E + HGG+ V+ ILE L RLA PGEF++RA Sbjct: 62 GAVLDEVLLSKMEKPKTFTREDVVEINCHGGMVVLKNILE-LCIKEGARLAEPGEFTKRA 120 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NG+IDL +AE++ DLI+S+T + ++ + G+LS KL + + IE +D Sbjct: 121 FLNGRIDLSQAEAVIDLINSKTNESSKAAISQLEGKLSRKIKDARSKLIELLAHIEVTVD 180 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 + E D++ + V +I +K + + + G IIR G VI+G N GKSSL N Sbjct: 181 YPEH-DIEEITGNMVYEEIGKIKEKLCDIVKSFERGRIIREGIDAVIIGKPNVGKSSLLN 239 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 L+ K AIVTDIPGTTRD++ +++ G ++I DTAGIRET+D+VEK G+++T ++ Sbjct: 240 ELSGKSKAIVTDIPGTTRDIIEEYININGIPLRIIDTAGIRETEDVVEKIGVEKTHRAID 299 Query: 298 NADLILLLKEINSKKEISFPKNIDFIFIGTKS--------DLYS-TYTEEYDHLI----- 343 ADL++++ I++K+ + N +G K DL E + L+ Sbjct: 300 EADLVIMM--IDAKRGMDEDDNRILTMLGDKKLIILINKIDLVDEKQINEIESLLKGRKC 357 Query: 344 ---SSFTGEGLEELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMASLN-EK 398 S G G+ EL N I + + I ++ RH + + +E A + + Sbjct: 358 IRTSVKEGTGISELENAITELFVQGEVSVNEEILLTNIRHKNLIDMAISSIEKAMESIDG 417 Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LD+++ ++ A+ LG+ITG E ++ IFSKFC+GK Sbjct: 418 SMPLDLVSIDITDAADYLGQITGESVSEDVMHEIFSKFCLGK 459 >gi|256420475|ref|YP_003121128.1| tRNA modification GTPase TrmE [Chitinophaga pinensis DSM 2588] gi|256035383|gb|ACU58927.1| tRNA modification GTPase TrmE [Chitinophaga pinensis DSM 2588] Length = 461 Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 144/456 (31%), Positives = 256/456 (56%), Gaps = 26/456 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL--DGRILDK 63 +TI A++T AI++IRL+G +C + K + +F + GR +D+ Sbjct: 11 DTIVALATAPGIGAIAVIRLNGTKAIDICNSLFPAKDLHQQAGHTLHFGSIVDRGRTIDE 70 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 ++ ++ +P S+TGE+ E HG + I++ R+A PGE++ RAF NGK+ Sbjct: 71 VVVSLYKAPRSYTGEEIVEISCHGSPYIQQQIIDACIH-AGARMAKPGEYTLRAFLNGKL 129 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL +AES+ADLI+S + + +M+ M G S ++L + IE +LDFS+E D Sbjct: 130 DLTQAESVADLIASNSAASHQTAMQQMRGGFSKELYSLREQLISFSALIELELDFSQE-D 188 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQG-KLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 V+ F+ + L ++ N++ H+ ++G +I+NG I+G NAGKS+L N L + Sbjct: 189 VE-FADRTQLYRLINEANEVVQHLVDSFRMGNVIKNGVNTAIVGKPNAGKSTLLNTLLNE 247 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 + AIV+DI GTTRD + L+++G L ++ DTAGIRE+ D++E G+++T ++ A ++ Sbjct: 248 NRAIVSDIAGTTRDTIEEVLNIQGVLFRLIDTAGIRESADVIESIGVQKTMEKIREAGVV 307 Query: 303 LLLKEIN--------SKKEISFPKNIDFIFIGTKSDL--YSTYTEEYDHL-----ISSFT 347 L L ++N ++ + + I+++ IG K+D+ + E++ + IS+ Sbjct: 308 LYLFDVNETSLSELQAQVDTFVNEGINYLLIGNKTDINGLAAMQEKFATVEGILYISAKQ 367 Query: 348 GEGLEELINK-IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDI 404 E ++EL ++ ++ ++S +I ++ RH L + ++ L+ L+ + G D+ Sbjct: 368 HEHIQELKDRLVQKVMSGDINT-EDTIVTNARHYAALQEVLKALQDVRFGLDSQLPG-DL 425 Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++ ++R LG+ITG + E LD IFSKFCIGK Sbjct: 426 LSLDIRRCLHYLGEITGQITNEDQLDFIFSKFCIGK 461 >gi|88809840|ref|ZP_01125346.1| tRNA modification GTPase [Synechococcus sp. WH 7805] gi|88786224|gb|EAR17385.1| tRNA modification GTPase [Synechococcus sp. WH 7805] Length = 460 Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 146/445 (32%), Positives = 237/445 (53%), Gaps = 33/445 (7%) Query: 20 ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG------LDGRILDKGLLIVFPSPE 73 I++IRLSGP + + + P + S +G D RI D+ L+++ +P Sbjct: 25 IAVIRLSGPQAQSAVKAVTRIPGLQPWE-SHHVLYGHVLAAESDERI-DEVLVLLMLAPR 82 Query: 74 SFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLAD 133 SFTGED E H HGG+ V +L + P +R A PGEFS+RA NG++DL AE+++D Sbjct: 83 SFTGEDVVEIHCHGGVIAVQRVLARVLDQPGVRRALPGEFSQRAVLNGRLDLTRAEAISD 142 Query: 134 LISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSS 189 L+++ ++ +L+M G+ G +++L + +D+L+ + EA +DF EED+ Sbjct: 143 LVAARSQRAAQLAMAGVDGGIQKRITALRERLLDQLSEL----EARVDF--EEDLPPLDG 196 Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249 +L ++ ++ + + G++G +R G ++ ++G N GKSSL N L++++ AIVTD Sbjct: 197 SALLEELQMVRCQLQQLVEDGQVGAALRQGLRVALVGRPNVGKSSLLNRLSRRERAIVTD 256 Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI- 308 +PGTTRD+L ++ LEG + + DTAGIR T D VE+ GI R+ + +ADL+LLL ++ Sbjct: 257 LPGTTRDLLESEIVLEGVPITLLDTAGIRATTDAVEQLGIARSHDALASADLVLLLFDLS 316 Query: 309 ------NSKKEISFPKNIDFIFIGTKSDLYST------YTEEYDHLISSFTGEGLEELIN 356 + P + + +G K DL + + D +S+ TG G EL+ Sbjct: 317 VGWTPDDEALRQRVPDAVPHLLVGNKVDLAGSDALARLSSAAVDVCLSANTGAGEAELVQ 376 Query: 357 K-IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVS 415 +K + L S+ + ++ A + D +LR A S Sbjct: 377 AMLKRCGALTDGSLLLSL-NQRQADLAQQAADALARSAQVAADGLPWDFWTIDLRQAIRS 435 Query: 416 LGKITGCVDVEQLLDIIFSKFCIGK 440 LG+ITG E +LD IFS+FCIGK Sbjct: 436 LGEITGEELTESVLDRIFSRFCIGK 460 >gi|255263117|ref|ZP_05342459.1| tRNA modification GTPase TrmE [Thalassiobium sp. R2A62] gi|255105452|gb|EET48126.1| tRNA modification GTPase TrmE [Thalassiobium sp. R2A62] Length = 428 Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 140/439 (31%), Positives = 230/439 (52%), Gaps = 18/439 (4%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66 TIFA++T + ++IIR+SG F + + + + +LR +G +LD+ L+ Sbjct: 3 TIFALATAHGKAGVAIIRISGADAFSGVSKLVGSLQ-YEKSMALRAVRTPEGDLLDQALV 61 Query: 67 IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126 + F + SFTGED E +HG A+ +L +L+ + A GEF+RRA ENG +DL Sbjct: 62 LTFVAGASFTGEDVVELQLHGSPAITQAVLRQLSLLEGFVAAEAGEFTRRALENGCLDLT 121 Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186 + E L+DLI +ETE QR ++ G L + W +L S +EA +DF+ +EDV Sbjct: 122 QVEGLSDLIEAETEAQRIQAIRVFDGALGAKADVWRQRLIRAVSLVEATIDFA-DEDVPT 180 Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246 EV + ++ ++S + ++ E +R+G+++ I+G N GKS+L NA+A +D AI Sbjct: 181 DVMPEVKELLEAVRKELSLEAAGVEIAERVRDGFEVAIVGAPNVGKSTLLNAIAGRDAAI 240 Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306 ++ GTTRD++ + +DL G V DTAG+ + D VE+ GI+R ADL ++L Sbjct: 241 TSEYAGTTRDIIEVKIDLGGLPVTFLDTAGLHDADSAVEQIGIRRALDRAAQADLRVVLS 300 Query: 307 EINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKF 366 EI + + + +S + + IS +G G+ EL+ ++ + L ++ Sbjct: 301 IDGKLPEIELLEGDEALVA------HSDQGADPNKEISGLSGFGVSELLARVANKLGHRA 354 Query: 367 KKLPFSIPSHKR-----HLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITG 421 +I R L L+ +E+ E +I++EN+R SL + G Sbjct: 355 SGAGLAIKERHRVALIDGLNSLTAVTDMIEVGDYLE-----EILSENIRDGIKSLDALVG 409 Query: 422 CVDVEQLLDIIFSKFCIGK 440 +DVE +L IF FCIGK Sbjct: 410 RMDVEDVLAEIFLSFCIGK 428 >gi|196232691|ref|ZP_03131542.1| tRNA modification GTPase TrmE [Chthoniobacter flavus Ellin428] gi|196223151|gb|EDY17670.1| tRNA modification GTPase TrmE [Chthoniobacter flavus Ellin428] Length = 445 Score = 220 bits (561), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 150/443 (33%), Positives = 237/443 (53%), Gaps = 12/443 (2%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF----PRKASLRYFFGLDGRIL 61 +TI A+ST AI+++RLSGP + I + KKP PR + R L Sbjct: 7 DTIAAISTPFGEGAIALLRLSGPRAAGIAGAIFRGKKPVTELVPRVQHYGAVYDAKKRKL 66 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121 D LL VF P S+TGED E HGG+ V IL L K R A PGEF++RA+ + Sbjct: 67 DDVLLTVFRGPHSYTGEDVVEISCHGGVLVSRRILGALLK-SGARSAEPGEFTQRAYLHH 125 Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181 K+DL +AE++ DLIS++T++ R + E + G L + + + + +EA +DF +E Sbjct: 126 KMDLTQAEAVMDLISAQTDLAMRAATEQLEGRLGECIRALRETIIELLANVEAYIDFPDE 185 Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 D+ S ++L + + D+ + ++ G+++R G + VI G N GKSSL N L Sbjct: 186 -DIDPDSGVDLLAKMDAARADLEALLATADRGKVLREGVRTVIYGAPNVGKSSLLNLLLG 244 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 + AIV+ PGTTRDV+ ++L G +++ DTAG+R +DD +E+EG+KRT+ E+ ADL Sbjct: 245 HERAIVSPRPGTTRDVIEETINLGGLPIRLIDTAGVRVSDDELEQEGMKRTWQELARADL 304 Query: 302 ILLLKEINSKKEISFPKNIDFIFIGTKSDL--YSTYTEEYDHLISSFTGEGLEELINKIK 359 L + ++ + S N + + K+DL + + + IS +G++ L I Sbjct: 305 ALHV--FDASEPPSEEANGTVLTVLNKTDLGEHPGWRKIDAVRISCLKNKGIDALTKAIV 362 Query: 360 S-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDIIAENLRLASVSLG 417 + I +S+ + RH L + ++E A + + +AE LR A ++G Sbjct: 363 ARIAGGSTTHRDWSLAINARHADCLGRARGFIEAARGALTGEMSPEFVAEELRGALDAVG 422 Query: 418 KITGCVDVEQLLDIIFSKFCIGK 440 + G D E++L IFS FCIGK Sbjct: 423 DVVGKADSEEILGKIFSTFCIGK 445 >gi|229164435|ref|ZP_04292363.1| tRNA modification GTPase mnmE [Bacillus cereus R309803] gi|228619040|gb|EEK75938.1| tRNA modification GTPase mnmE [Bacillus cereus R309803] Length = 458 Score = 220 bits (561), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 147/459 (32%), Positives = 255/459 (55%), Gaps = 24/459 (5%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLD---G 58 E +TI A+ST AI+I+R+SG + I K K P ++ Y +D Sbjct: 2 EFDTIAAISTALGEGAIAIVRVSGDDAVEKVNRIFKGKDLTEVPSH-TIHYGHIVDLDTN 60 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 +++++ ++ + +P +FT E+ E + HGG+ VN +L+ L +RLA PGEF++RAF Sbjct: 61 QVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAF 119 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG+IDL +AE++ DLI ++T+ +++ M G LS L G+ ++ + +E ++D+ Sbjct: 120 LNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGRLRQEILETLAHVEVNIDY 179 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E +DV+ + ++ +++ +I+ + K G+I+R G I+G N GKSSL N+ Sbjct: 180 PEYDDVEEMTHNILIEKATYVRTEIAKILETSKQGKILREGIATAIIGRPNVGKSSLLNS 239 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L ++ AIVTDI GTTRDV+ +++ G +K+ DTAGIRET+D+VE+ G++R+ + Sbjct: 240 LVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSKEMMSQ 299 Query: 299 ADLILLL----KEINSKKEISFP--KNIDFIFIGTKSDLYSTYTEEY-------DHLISS 345 ADL+L++ + + ++ E F + DFI I K+DL E + +I++ Sbjct: 300 ADLVLVVVNYSEALTNEDEDLFRAVQGKDFIVIVNKTDLPQAIDMERVTELSAGNRVITT 359 Query: 346 --FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCG 401 +G++EL N I + + S+ RH+ L+Q + + + E Sbjct: 360 SLIEEQGIDELENAIAELFFEGTIDSADMTYVSNARHIGLLTQAGKTIGDAIEAIENGVP 419 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+ITG E L+D +FS+FC+GK Sbjct: 420 IDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458 >gi|157737854|ref|YP_001490538.1| tRNA modification GTPase TrmE [Arcobacter butzleri RM4018] gi|205829054|sp|A8EV95|MNME_ARCB4 RecName: Full=tRNA modification GTPase mnmE gi|157699708|gb|ABV67868.1| tRNA modification GTPase [Arcobacter butzleri RM4018] Length = 446 Score = 220 bits (561), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 152/452 (33%), Positives = 248/452 (54%), Gaps = 23/452 (5%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63 E +TI A++T +ISI+R+SG ++ I KK R A+L + I+D+ Sbjct: 3 ENDTIVAIATANGIGSISIVRVSGAKALEIATKISKKNNFKARLATLSTIYDSKNEIIDE 62 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 L+I F SP SFTGED EF HGG+A+ N I++E+ RLANPGEFS+RAF N KI Sbjct: 63 ALVIYFKSPFSFTGEDVVEFQCHGGVAISNMIVDEVLN-AGARLANPGEFSKRAFFNNKI 121 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL +AE+++ +I + + +L + GEL++ + + L + ++ E +D++EE D Sbjct: 122 DLTKAEAISKIIEARSADAVKLLARQLKGELTNFVDEIREDLLFMLAYTEVSIDYAEE-D 180 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 + +++ N + + +S+ + + E + G+K+ I+G N GKSSL N L D Sbjct: 181 LPTDIYEQIENKMQKISLKLSNTLEASRRREGMIEGFKVAIIGKPNVGKSSLLNKLLNFD 240 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303 AI++DI GTTRD + + + +++KI DTAGIR+ D++EK GI+++ + AD+++ Sbjct: 241 RAIISDIAGTTRDTIEESVRIGTHIIKIVDTAGIRDASDVIEKIGIEKSIQAINEADIVI 300 Query: 304 LLKEINSK-------------KEISFPKNIDFIFIGTKSDLYSTYTEEY-DHLISSFTGE 349 L + NSK KE S K I + KSDL + + + D I T E Sbjct: 301 ALFD-NSKICDDEDKKILDLIKENSDKK---VIVVLNKSDLQNQFDKNVLDSFIELSTKE 356 Query: 350 GLEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAEN 408 + LI +++ IL SN F ++ S KR + + T+ + +A K L+ A Sbjct: 357 DINPLIKELELILDSNTFGD-DITLVS-KRQVLAVENTLYNIGLAKEPLKSGELEFFAHF 414 Query: 409 LRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + A + IT D +++LD++F +FC+GK Sbjct: 415 ITQALEDISSITRPYDNDEMLDVMFGEFCLGK 446 >gi|303230675|ref|ZP_07317425.1| tRNA modification GTPase TrmE [Veillonella atypica ACS-049-V-Sch6] gi|302514730|gb|EFL56722.1| tRNA modification GTPase TrmE [Veillonella atypica ACS-049-V-Sch6] Length = 461 Score = 220 bits (561), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 151/460 (32%), Positives = 256/460 (55%), Gaps = 28/460 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGLD---G 58 +TI A++T + IIR+SG F + + K P + +++Y +D Sbjct: 5 DTIAAIATPPGIGGVGIIRVSGKDSFPIVNSLFKSAGTVPLMDRQNRTIQYGTIVDPATN 64 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 + +D+ L+++ P S+T ED E HGGI V IL+ L ++R+A GEF++RAF Sbjct: 65 KTVDEVLVLLMKGPHSYTAEDVVEIQCHGGIVPVRQILKLLVNH-DVRMAEAGEFTKRAF 123 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG+IDL +AE++ D+I ++TE L++ + G +SS ++L + + +E +D+ Sbjct: 124 MNGRIDLTQAEAIIDIIEAKTEDSLSLAVSQLDGTVSSFVKDVREQLIAMIAHLEVTIDY 183 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 EE D+++ +S+EV + + + +S G +IR+G VI+G NAGKSSL NA Sbjct: 184 PEE-DIEDVTSQEVREQLEPILKAVDELLSTANTGRLIRDGITTVIVGRPNAGKSSLMNA 242 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L +++ AIVTDIPGTTRD + + +EG +++ DTAGIR+T D VE G++R + Sbjct: 243 LLRENRAIVTDIPGTTRDSIEEYMTVEGISLRLIDTAGIRDTQDTVEALGVERARDYINK 302 Query: 299 ADLILLLKEIN---SKKEISFPKNI---DFIFIGTKSDLYSTYTEEY--DH-------LI 343 AD++L + + + + +EI ++ + I + KSD+ T+E +H I Sbjct: 303 ADIVLCVIDGSTPLTPEEIEILTSVSGLNTIVLLNKSDVAQVVTDETIKEHGTFTAIERI 362 Query: 344 SSFTGEGLEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402 S+ GEG L ++ ++ + K+ ++ S+ RH+ + Q +E A L+ D G+ Sbjct: 363 SAKEGEGSAVLSKWVQELVYGGRVKQDNSAMISNVRHISLMEQAKAQVEQA-LSSIDMGM 421 Query: 403 --DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D +A +LR A LG ITG E ++D +F++FC+GK Sbjct: 422 PVDFVATDLRSAWELLGDITGDTIRESMIDELFNRFCLGK 461 >gi|167041019|ref|YP_001664004.1| tRNA modification GTPase TrmE [Thermoanaerobacter sp. X514] gi|205829185|sp|B0K5N4|MNME_THEPX RecName: Full=tRNA modification GTPase mnmE gi|166855259|gb|ABY93668.1| tRNA modification GTPase TrmE [Thermoanaerobacter sp. X514] Length = 460 Score = 220 bits (561), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 171/464 (36%), Positives = 244/464 (52%), Gaps = 36/464 (7%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRK-------ASLRYFFGLDG 58 +TI A+ST + I I+RLSG E I K KP+ K +L Y +D Sbjct: 4 DTIAAISTFPGEAGIGIVRLSGDDAL---EIISKIFKPYKSKDIKKVKSHTLHYGHIVDP 60 Query: 59 R---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 + D+ L+ + P ++T ED E + HGGI V + ILE + K RLA PGEF++ Sbjct: 61 ETEEVYDEVLVSIMEKPNTYTREDIVEINCHGGIVVTSKILELVLKQ-GARLAEPGEFTK 119 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG+IDL +AE++ D+I ++T + R + + + G + S + DK+ + + A Sbjct: 120 RAFLNGRIDLSQAEAVIDIIRAKTMLANRYAQKQLVGYVGSKIKEMKDKIMGLLVHLLAL 179 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +DF EE DV+ KE+L + DI I+ + G IIR G K I+G N GKSSL Sbjct: 180 IDFPEE-DVEELERKEILETAKEIVEDIDKLIASSESGRIIREGLKTAIIGKPNVGKSSL 238 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 NAL K++ AIVTDIPGTTRD++ ++++G +K+ DTAGIR+TD++VEK G+ ++ Sbjct: 239 LNALLKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAGIRDTDELVEKIGVTKSKEV 298 Query: 296 VENADLIL--------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTE-EYDHL---- 342 + ADLIL L KE +I KNI IF+ K DL E E L Sbjct: 299 LAEADLILFVLDASRELTKEDYEIFDILTGKNI--IFVLNKIDLPKKIDEKELKDLTKDG 356 Query: 343 ----ISSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE-MASLN 396 +S+ GLEEL N I + + I + RH L +Y+E Sbjct: 357 IIIEVSTVEKIGLEELENTIYNLVFRGDISLREDEIVINSRHKEALINAKKYMESCVEAI 416 Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E D+I +L A LGKITG E L++ IF +FC+GK Sbjct: 417 EGGYSEDLITIDLNAALDQLGKITGETATEDLINEIFERFCVGK 460 >gi|304405894|ref|ZP_07387552.1| tRNA modification GTPase TrmE [Paenibacillus curdlanolyticus YK9] gi|304345137|gb|EFM10973.1| tRNA modification GTPase TrmE [Paenibacillus curdlanolyticus YK9] Length = 461 Score = 220 bits (561), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 151/467 (32%), Positives = 245/467 (52%), Gaps = 33/467 (7%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55 MN +TI A++T +I+IIR+SGP + + + K+ F S +G Sbjct: 1 MNMTHDTIAAIATAVGEGSIAIIRVSGPDAIERTADVFRSKEDFRSAESHTVHYGHIVDP 60 Query: 56 LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 L + +++ L+ V P SFTGED E HGG+ +L+ + K P +R+A PGEF++ Sbjct: 61 LTNQRVEEVLVTVMRGPRSFTGEDVVEIGTHGGVIAAKNVLQLVLKQPGIRVAEPGEFTK 120 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG+IDL +AE++ DLI S+++ +++M+ G LS + + + +E + Sbjct: 121 RAFLNGRIDLTQAEAVMDLIRSKSDRAFQVAMKQSEGSLSKRIADLRQTIIEVIAHVEVN 180 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +D+ E DV+ +S + + + G+I+R G I+G N GKSSL Sbjct: 181 IDYPEH-DVEELTSAFIREHCGVALEGVKRLLKTASEGKILREGIVTAIVGRPNVGKSSL 239 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 NAL + + AIVTDIPGTTRDV+ + + G +++ DTAGIRET D+VE+ G++R+ Sbjct: 240 LNALTQSNKAIVTDIPGTTRDVIEEFVTVNGIPLRLLDTAGIRETADVVERIGVERSNSA 299 Query: 296 VENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTY-TEEYDHLISSF 346 +E ADLIL + N K E + + IF K+DL T E + + F Sbjct: 300 LEEADLILYVLNRNEKLHDDDRQLMEKLAGRQVVVIF--NKTDLPQQLETAEVEQV---F 354 Query: 347 TGEGL-------EELINKIKSILSNKF-----KKLPFSIPSHKRHLYHLSQTVR-YLEMA 393 E + EE I++++ ++S F + + ++ RH+ L + + L+ Sbjct: 355 PAERIVPMSVLGEEGIDRLEEVISELFFEGRIESNDLTYVTNVRHISLLERAKQSLLDAI 414 Query: 394 SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E +DI+ +++ A LG++ G E LLD IFS+FC+GK Sbjct: 415 EATEIGVPIDIVQIDIQQAWELLGEVIGDSAGESLLDQIFSQFCLGK 461 >gi|220930844|ref|YP_002507753.1| tRNA modification GTPase TrmE [Clostridium cellulolyticum H10] gi|220001172|gb|ACL77773.1| tRNA modification GTPase TrmE [Clostridium cellulolyticum H10] Length = 460 Score = 220 bits (561), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 160/464 (34%), Positives = 253/464 (54%), Gaps = 35/464 (7%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LDGR--- 59 ++TI A+ST I +IR+SG F I + K S +G +D + Sbjct: 4 EDTIAALSTPYGTGGIGVIRISGGQAFDTANKIFRSSKTIEEIHSHTVTYGKIVDPKLND 63 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 ++D+ LL+ P +FT ED E H HGGI VVN +LE + K +R A PGEF++RAF Sbjct: 64 VVDEVLLLKMCKPNTFTREDVIEIHCHGGIVVVNRVLELIFK-NGVRPAQPGEFTKRAFL 122 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NG+IDL +AE++ DLI+S+T + ++ + G LS + L + + IE +D+ Sbjct: 123 NGRIDLSQAEAIIDLINSKTVESSKAAVSHLEGRLSLRLKSIREVLVGLLAHIEVTVDYP 182 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 E D++ + + VL +++ +K ++ + + G+I+R G IVI G N GKSSL N L Sbjct: 183 EH-DIEEITGENVLENLIKIKEELITLAGTFERGKILREGIDIVIAGKPNVGKSSLLNQL 241 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 + AIVTDIPGTTRD++ ++++G KI DTAGIR T+D+VE G+ R + +E+A Sbjct: 242 SGSTKAIVTDIPGTTRDIIEEYVNIKGIPAKIIDTAGIRSTEDVVETIGVNRAYEAIESA 301 Query: 300 DLIL---------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLIS 344 DLI+ +LK I +KK + D + + S + +E L + Sbjct: 302 DLIIAVLSADTGVTEEDIQILKMIKNKKSLILINKTDLVEKNSISKIKQQLSECDIVLEA 361 Query: 345 SFTGE-GLEELINKIKSILSNKFKKLPFS-----IPSHKRHLYHLSQTVRYLEMASLNEK 398 S + G+EEL ++ +S F K S + ++ RH Y + + + +E A LN Sbjct: 362 SVIKDVGIEEL----ETAISGLFIKGDISSNNEVLLTNARHKYLVDRAINDIEQA-LNSF 416 Query: 399 DCG--LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + G LD++ +++ + S+G+ITG E +L IFS+FCIGK Sbjct: 417 ETGMPLDMVTIDIKSCADSIGEITGESIDEAVLHNIFSRFCIGK 460 >gi|255033904|ref|YP_003084525.1| tRNA modification GTPase TrmE [Dyadobacter fermentans DSM 18053] gi|254946660|gb|ACT91360.1| tRNA modification GTPase TrmE [Dyadobacter fermentans DSM 18053] Length = 455 Score = 220 bits (561), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 156/455 (34%), Positives = 252/455 (55%), Gaps = 25/455 (5%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYF---FGLDGRI 60 ++E I A++T + AI +IR+SG + + K K ++ +F F D I Sbjct: 8 QQEVICALATPSGVGAIGVIRVSGLGSIAMVNSVFKGKNLENAESHTVHFGTIFSGD-EI 66 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+ L+ VF +P SFT EDS E HG ++ IL+ L + R+A PGEF++RAF N Sbjct: 67 IDEVLVTVFKTPRSFTKEDSVEISCHGSDYIIRQILKVLI-LKGARIAKPGEFTQRAFLN 125 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G+ DL++AE++ADLI+++++ + ++ + G S +L H S IE +LDF E Sbjct: 126 GQFDLVQAEAVADLIAADSQASHKTALNQLRGGFSKKLASLRAELIHFASLIELELDFGE 185 Query: 181 EEDVQNFSSKEVLNDIL-FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 E DV+ F+ ++ L ++ L + I IS G I+ G + I+G N GKS+L NAL Sbjct: 186 E-DVE-FAQRDDLRRLIDALLSTIEPLISSFDFGNAIKEGVPVAIIGSPNVGKSTLLNAL 243 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 ++ AIVT I GTTRDV+ + L+G + DTAGIRET D+VE GI+R+ ++ A Sbjct: 244 LNEEKAIVTSIAGTTRDVIEDTIVLDGLKFRFIDTAGIRETTDVVESIGIERSKAAMDKA 303 Query: 300 DLILLL----KEINSKKEIS--FPKNIDFIFIGTKSDLYSTYTEEYDH------LISSFT 347 D+++ L + + + ++ P + +F+ K+D+ E IS+ T Sbjct: 304 DIVIFLFDSAETLADNRALAALLPAGKEVLFVLNKTDINPLLASELSGDASDIIPISAHT 363 Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL--DII 405 + L L +K+ S++ + ++ ++ RH HL +T L LN G+ D + Sbjct: 364 QQNLPVLTSKLVSLVHG--QAAGDTVVTNLRHYEHLMKTSDSLTDV-LNGLSLGVTGDFL 420 Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A+++RLA LG+ITG + + LL+ IFS+FCIGK Sbjct: 421 AQDIRLALHHLGEITGTIATDDLLENIFSRFCIGK 455 >gi|304318133|ref|YP_003853278.1| tRNA modification GTPase TrmE [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302779635|gb|ADL70194.1| tRNA modification GTPase TrmE [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 458 Score = 220 bits (560), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 161/460 (35%), Positives = 249/460 (54%), Gaps = 30/460 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA----SLRYFFGLD---G 58 +TI A+ST + ISIIR+SG ++ I K K+ KA ++ Y F D Sbjct: 4 DTIAAISTAVGEAGISIIRISGRDAIKIVSGIFKSKRNIDLKAVKSHTVHYGFIYDSESN 63 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 + D+ L+ V SP ++T ED E + HGG ILE + K RLA PGEF++RAF Sbjct: 64 EVYDEVLVNVMKSPHTYTKEDIVEINCHGGYVPAKRILELVLK-NGARLAEPGEFTKRAF 122 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG+ID+ +AE++ D+I S+T + + ++ +SG + + + L + + I A +DF Sbjct: 123 INGRIDMSQAEAVIDIIRSKTALSNKYAVMQLSGSVKDKINEIKNDLVALIAHIFALMDF 182 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 +E DV+ F+ E+++ I I + + G IIR G VI+G N GKSSL NA Sbjct: 183 PDE-DVEIFNDSELIDGIKNAIRKIDELLDSSEKGRIIREGLNTVIIGKPNVGKSSLLNA 241 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L ++ AIVTDIPGTTRD++ L+++G +K+ DTAGIR+TD++VEK G++R+ + Sbjct: 242 LLNENRAIVTDIPGTTRDIIEEYLNIKGIPIKLIDTAGIRDTDELVEKIGVERSKEAINK 301 Query: 299 ADLIL---------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI 343 ADLI+ +L+ I+ K + ID + ++ E Y L Sbjct: 302 ADLIIFVFDNSRPLEKEDYEILRIIDDKNVLYVLNKIDLPSMIDLDEIRRISNENYISL- 360 Query: 344 SSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402 SS T EG + L N + + ++ N F + ++ RH L + L M+ LN + GL Sbjct: 361 SSVTKEGFDALENTVYNMVMENGLSNNEF-LLTNMRHKDALLKAKENL-MSCLNTIERGL 418 Query: 403 --DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D ++ +L A +LG ITG E L++ IF +FC+GK Sbjct: 419 TEDFVSIDLNAAIDNLGLITGETANEDLINEIFERFCVGK 458 >gi|320117061|ref|YP_004187220.1| tRNA modification GTPase TrmE [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|319930152|gb|ADV80837.1| tRNA modification GTPase TrmE [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 462 Score = 220 bits (560), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 171/464 (36%), Positives = 244/464 (52%), Gaps = 36/464 (7%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRK-------ASLRYFFGLDG 58 +TI A+ST + I I+RLSG E I K KP+ K +L Y +D Sbjct: 6 DTIAAISTFPGEAGIGIVRLSGDDAL---EIISKIFKPYKSKDIKKVKSHTLHYGHIVDP 62 Query: 59 R---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 + D+ L+ + P ++T ED E + HGGI V + ILE + K RLA PGEF++ Sbjct: 63 ETEEVYDEVLVSIMKKPNTYTREDIVEINCHGGIVVTSKILELVLKQ-GARLAEPGEFTK 121 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG+IDL +AE++ D+I ++T + R + + + G + S + DK+ + + A Sbjct: 122 RAFLNGRIDLSQAEAVIDIIRAKTMLANRYAQKQLVGYVGSKIKEMKDKIMGLLVHLLAL 181 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +DF EE DV+ KE+L + DI I+ + G IIR G K I+G N GKSSL Sbjct: 182 IDFPEE-DVEELERKEILETAKEIVEDIDKLIASSESGRIIREGLKTAIIGKPNVGKSSL 240 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 NAL K++ AIVTDIPGTTRD++ ++++G +K+ DTAGIR+TD++VEK G+ ++ Sbjct: 241 LNALLKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAGIRDTDELVEKIGVTKSKEV 300 Query: 296 VENADLIL--------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTE-EYDHL---- 342 + ADLIL L KE +I KNI IF+ K DL E E L Sbjct: 301 LAEADLILFVLDASRELTKEDYEIFDILTGKNI--IFVLNKIDLPKKIDEKELKDLTKDG 358 Query: 343 ----ISSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE-MASLN 396 +S+ GLEEL N I + + I + RH L +Y+E Sbjct: 359 IIIEVSTVEKIGLEELENTIYNLVFRGDISLREDEIVINSRHKEALINAKKYMESCVEAI 418 Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E D+I +L A LGKITG E L++ IF +FC+GK Sbjct: 419 EGGYSEDLITIDLNAALDQLGKITGETATEDLINEIFERFCVGK 462 >gi|229065143|ref|ZP_04200436.1| tRNA modification GTPase mnmE [Bacillus cereus AH603] gi|228716172|gb|EEL67891.1| tRNA modification GTPase mnmE [Bacillus cereus AH603] Length = 458 Score = 220 bits (560), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 152/459 (33%), Positives = 254/459 (55%), Gaps = 24/459 (5%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----LD-G 58 E +TI A+ST AI+I+R+SG + + I K K + +S +G LD Sbjct: 2 EFDTIAAISTALGEGAIAIVRVSGDDAIEKVDRIFKGKD-LTQVSSHTIHYGHIVDLDTN 60 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 +++++ ++ + +P +FT E+ E + HGG+ VN +L+ L RLA PGEF++RAF Sbjct: 61 QVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGARLAEPGEFTKRAF 119 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG+IDL +AE++ DLI ++T+ +++ M G LS L G ++ + IE ++D+ Sbjct: 120 LNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGHLRQEILETLAHIEVNIDY 179 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E +DV+ + ++ ++ +I+ + K G+I+R G I+G N GKSSL N+ Sbjct: 180 PEYDDVEEMTHNILIEKATHVRAEIAKILETSKQGKILREGISTAIIGRPNVGKSSLLNS 239 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L ++ AIVTDI GTTRDV+ +++ G +K+ DTAGIRET+DIVE+ G++R+ + Sbjct: 240 LVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDIVERIGVERSKEMMSQ 299 Query: 299 ADLILLL----KEINSKKEISFP--KNIDFIFIGTKSDLYSTYTEEY-------DHLISS 345 ADL+L++ + + ++ E F + DFI I K+DL E + +I++ Sbjct: 300 ADLVLIVVNYSEALTNEDEDLFRAVQGKDFIVIVNKTDLPQEIDMERVTDLAVGNRVITT 359 Query: 346 --FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCG 401 +G++EL I + + S+ RH+ L+Q R + A E Sbjct: 360 SLIEEQGIDELEKAIADLFFEGTIDSADMTYVSNARHIGLLTQAGRTINDAIEAIENGVP 419 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L A LG+ITG E L+D +FS+FC+GK Sbjct: 420 IDMVQIDLTRAWEILGEITGDTVHESLIDQLFSQFCLGK 458 >gi|282848771|ref|ZP_06258166.1| tRNA modification GTPase TrmE [Veillonella parvula ATCC 17745] gi|282581557|gb|EFB86945.1| tRNA modification GTPase TrmE [Veillonella parvula ATCC 17745] Length = 461 Score = 220 bits (560), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 152/460 (33%), Positives = 256/460 (55%), Gaps = 28/460 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGLD---G 58 +TI A++T + IIR+SG F + + K P + +++Y +D Sbjct: 5 DTIAAIATPPGIGGVGIIRVSGKDSFPIVNSLFKSVGTVPLMDRQNRTIQYGTIVDPATN 64 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 + +D+ L+++ P S+T ED E HGGI V IL+ L N+R+A GEF++RAF Sbjct: 65 KTIDEVLVLLMKGPHSYTAEDVVEIQCHGGIVPVRQILKLLVNH-NVRMAEAGEFTKRAF 123 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG+IDL +AE++ D+I ++TE L++ + G +SS ++L + + +E +D+ Sbjct: 124 MNGRIDLTQAEAIIDIIEAKTEDSLSLAVAQLDGTVSSFVKDVREQLIAMIAHLEVTIDY 183 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 EE D+++ +S+EV + + + +S G +IR+G VI+G NAGKSSL NA Sbjct: 184 PEE-DIEDVTSQEVREQLEPILKAMEDLLSTANTGRLIRDGITTVIVGRPNAGKSSLMNA 242 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L +++ AIVTDIPGTTRD + + ++G +++ DTAGIR+T D VE G++R + Sbjct: 243 LLRENRAIVTDIPGTTRDSIEEYMTVKGISLRLIDTAGIRDTQDTVEALGVERARDYINK 302 Query: 299 ADLILLLKEINS---KKEISFPKNI---DFIFIGTKSDLYSTYTEE--YDH-------LI 343 AD++L + + ++ +EI ++ + I + KSD+ T+E +H I Sbjct: 303 ADIVLCVIDGSTPLNPEEIEILTSVSGLNTIVLLNKSDVAQVVTDENIKEHGTFTAIERI 362 Query: 344 SSFTGEGLEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402 S+ GEG L ++ ++ + K+ ++ S+ RH+ + Q +E A L+ D G+ Sbjct: 363 SAKEGEGSAVLSKWVQELVYGGRVKQDNSAMISNVRHISLMEQAKVQVEQA-LSSIDMGM 421 Query: 403 --DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D +A +LR A LG ITG E ++D +FS+FC+GK Sbjct: 422 PVDFVATDLRSAWELLGDITGDTIRESMIDELFSRFCLGK 461 >gi|257866268|ref|ZP_05645921.1| tRNA modification GTPase mnmE [Enterococcus casseliflavus EC30] gi|257873216|ref|ZP_05652869.1| tRNA modification GTPase mnmE [Enterococcus casseliflavus EC10] gi|257800226|gb|EEV29254.1| tRNA modification GTPase mnmE [Enterococcus casseliflavus EC30] gi|257807380|gb|EEV36202.1| tRNA modification GTPase mnmE [Enterococcus casseliflavus EC10] Length = 481 Score = 220 bits (560), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 153/463 (33%), Positives = 248/463 (53%), Gaps = 24/463 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK-KKPFPRKASLRYFFGL--- 56 + E +TI A+ST AISI+RLSG + + I + K + S +G Sbjct: 20 ITQEFDTIAAISTPPGEGAISIVRLSGEEAIAIADRIFQAGTKTLAQVPSHTIHYGHIID 79 Query: 57 --DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114 + R++D+ +L V P +FT ED E + HGGI VVN +L+ L RLA PGEF+ Sbjct: 80 PEENRLMDEVMLSVMKKPRTFTREDVVEINCHGGIVVVNQLLQ-LVLRQGARLAEPGEFT 138 Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174 +RAF NG++DL +AE++ DLI ++T+ L++ + G LS L ++ + +E Sbjct: 139 KRAFLNGRVDLSQAEAVMDLIRAKTDKAMNLAVNQLDGNLSHLIRTLRQEILETLAQVEV 198 Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234 ++D+ E +DV+ ++ +L +K I + ++ + G+I+R G I+G N GKSS Sbjct: 199 NIDYPEYDDVEELTTCLLLEKATMVKGQIQALLATAQQGKILREGLSTAIIGRPNVGKSS 258 Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294 L N L +++ AIVTDI GTTRDV+ +++ G +K+ DTAGIRET+DIVEK G++R+ Sbjct: 259 LLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDIVEKIGVERSRK 318 Query: 295 EVENADLILLLKEINS------KKEISFPKNIDFIFIGTKSDL--------YSTY-TEEY 339 + A+LILL+ + K+ + I + K+DL + Y +E Sbjct: 319 ALAEAELILLVLNQSEGLTQEDKQLLELTAGSRRIILLNKTDLEPKLATAELAQYAADEP 378 Query: 340 DHLISSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNE 397 +S T EGL++L I + K S S+ RH+ L V+ L E+ E Sbjct: 379 IFSVSVLTSEGLDQLEQAIADLFFGGKTTDKDASYLSNTRHIALLENAVQSLSEVIQGIE 438 Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ ++ LG++ G ++L+ +FS+FC+GK Sbjct: 439 AGMPVDLVQIDMTRCWDYLGEVVGDSVQDELITQLFSQFCLGK 481 >gi|300913770|ref|ZP_07131087.1| tRNA modification GTPase TrmE [Thermoanaerobacter sp. X561] gi|307725544|ref|YP_003905295.1| tRNA modification GTPase TrmE [Thermoanaerobacter sp. X513] gi|300890455|gb|EFK85600.1| tRNA modification GTPase TrmE [Thermoanaerobacter sp. X561] gi|307582605|gb|ADN56004.1| tRNA modification GTPase TrmE [Thermoanaerobacter sp. X513] Length = 462 Score = 220 bits (560), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 171/464 (36%), Positives = 244/464 (52%), Gaps = 36/464 (7%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRK-------ASLRYFFGLDG 58 +TI A+ST + I I+RLSG E I K KP+ K +L Y +D Sbjct: 6 DTIAAISTFPGEAGIGIVRLSGDDAL---EIISKIFKPYKSKDIKKVKSHTLHYGHIVDP 62 Query: 59 R---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 + D+ L+ + P ++T ED E + HGGI V + ILE + K RLA PGEF++ Sbjct: 63 ETEEVYDEVLVSIMEKPNTYTREDIVEINCHGGIVVTSKILELVLKQ-GARLAEPGEFTK 121 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG+IDL +AE++ D+I ++T + R + + + G + S + DK+ + + A Sbjct: 122 RAFLNGRIDLSQAEAVIDIIRAKTMLANRYAQKQLVGYVGSKIKEMKDKIMGLLVHLLAL 181 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +DF EE DV+ KE+L + DI I+ + G IIR G K I+G N GKSSL Sbjct: 182 IDFPEE-DVEELERKEILETAKEIVEDIDKLIASSESGRIIREGLKTAIIGKPNVGKSSL 240 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 NAL K++ AIVTDIPGTTRD++ ++++G +K+ DTAGIR+TD++VEK G+ ++ Sbjct: 241 LNALLKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAGIRDTDELVEKIGVTKSKEV 300 Query: 296 VENADLIL--------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTE-EYDHL---- 342 + ADLIL L KE +I KNI IF+ K DL E E L Sbjct: 301 LAEADLILFVLDASRELTKEDYEIFDILTGKNI--IFVLNKIDLPKKIDEKELKDLTKDG 358 Query: 343 ----ISSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE-MASLN 396 +S+ GLEEL N I + + I + RH L +Y+E Sbjct: 359 IIIEVSTVEKIGLEELENTIYNLVFRGDISLREDEIVINSRHKEALINAKKYMESCVEAI 418 Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E D+I +L A LGKITG E L++ IF +FC+GK Sbjct: 419 EGGYSEDLITIDLNAALDQLGKITGETATEDLINEIFERFCVGK 462 >gi|167038669|ref|YP_001666247.1| tRNA modification GTPase TrmE [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|205829184|sp|B0K8H9|MNME_THEP3 RecName: Full=tRNA modification GTPase mnmE gi|166857503|gb|ABY95911.1| tRNA modification GTPase TrmE [Thermoanaerobacter pseudethanolicus ATCC 33223] Length = 460 Score = 220 bits (560), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 171/464 (36%), Positives = 244/464 (52%), Gaps = 36/464 (7%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRK-------ASLRYFFGLDG 58 +TI A+ST + I I+RLSG E I K KP+ K +L Y +D Sbjct: 4 DTIAAISTFPGEAGIGIVRLSGDDAL---EIISKIFKPYKSKDIKKVKSHTLHYGHIVDP 60 Query: 59 R---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 + D+ L+ + P ++T ED E + HGGI V + ILE + K RLA PGEF++ Sbjct: 61 ETEEVYDEVLVSIMKKPNTYTREDIVEINCHGGIVVTSKILELVLKQ-GARLAEPGEFTK 119 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG+IDL +AE++ D+I ++T + R + + + G + S + DK+ + + A Sbjct: 120 RAFLNGRIDLSQAEAVIDIIRAKTMLANRYAQKQLVGYVGSKIKEMKDKIMGLLVHLLAL 179 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +DF EE DV+ KE+L + DI I+ + G IIR G K I+G N GKSSL Sbjct: 180 IDFPEE-DVEELERKEILETAKEIVEDIDKLIASSESGRIIREGLKTAIIGKPNVGKSSL 238 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 NAL K++ AIVTDIPGTTRD++ ++++G +K+ DTAGIR+TD++VEK G+ ++ Sbjct: 239 LNALLKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAGIRDTDELVEKIGVTKSKEV 298 Query: 296 VENADLIL--------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTE-EYDHL---- 342 + ADLIL L KE +I KNI IF+ K DL E E L Sbjct: 299 LAEADLILFVLDASRELTKEDYEIFDILTGKNI--IFVLNKIDLPKKIDEKELKDLTKDG 356 Query: 343 ----ISSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE-MASLN 396 +S+ GLEEL N I + + I + RH L +Y+E Sbjct: 357 IIIEVSTVEKIGLEELENTIYNLVFRGDISLREDEIVINSRHKEALINAKKYMESCVEAI 416 Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E D+I +L A LGKITG E L++ IF +FC+GK Sbjct: 417 EGGYSEDLITIDLNAALDQLGKITGETATEDLINEIFERFCVGK 460 >gi|116514958|ref|YP_802587.1| GTP-binding protein [Buchnera aphidicola str. Cc (Cinara cedri)] gi|122285646|sp|Q058F5|MNME_BUCCC RecName: Full=tRNA modification GTPase mnmE gi|116256812|gb|ABJ90494.1| GTP-binding protein [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 454 Score = 220 bits (560), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 146/413 (35%), Positives = 237/413 (57%), Gaps = 20/413 (4%) Query: 46 RKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNL 105 R A F+ + +LD+G+ + F +P+SFTGE+ EFH HG +++ +++ + + N+ Sbjct: 44 RFAYFSSFYDVKNNLLDQGIALFFLAPKSFTGENILEFHSHGNPIILDLLIKNILTIKNV 103 Query: 106 RLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKL 165 R+ANPGEFS+RAF N KIDL++AE++ D+I++E+ + + ++ + G S + + L Sbjct: 104 RIANPGEFSKRAFLNNKIDLVQAEAINDIINAESHLSVKAALSSLRGTFSKKINKILFNL 163 Query: 166 THIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVIL 225 I S IEA ++F EE + N K + + F+ I++ + + I N KIVI Sbjct: 164 KDIYSEIEAIINFPEELNDLNI-QKNIKKKLSFIIKMITNLLDETHKNYIFSNTIKIVIA 222 Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVE 285 G N GKSSL N L+K+ V+IVT+IPGTTRDV+ ++ G + DTAG++++ DI+E Sbjct: 223 GPPNVGKSSLLNFLSKEKVSIVTNIPGTTRDVIHKNIWFNGVCCEFLDTAGLQKSQDIIE 282 Query: 286 KEGIKRTFLEVENADLILLLKEINSKKEI--SFPKNI--------DFIFIGTKSDL---- 331 GIK +++ + I L+ ++ KK I +F KNI + FI K DL Sbjct: 283 VIGIKLAKKHIKSCNHIFLMFDVTKKKMINNNFIKNIVNNLKKNQNITFIFNKIDLINKK 342 Query: 332 --YSTYTEEYDHLISSFTGE-GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388 S ++++ + S G+E L NKI I + + + + KRH+ L +++ Sbjct: 343 PYISIIYKKFECIYLSLKKNIGIEYLKNKILEI-TTLHNNVESTFLAKKRHISALKKSLM 401 Query: 389 YLEMASLNE-KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 YL N K+ L+++++++RL+ L KITG + E LLD IFSKFCIGK Sbjct: 402 YLINGKRNWMKNLYLELLSDDIRLSIKYLLKITGKFNSEDLLDKIFSKFCIGK 454 >gi|268570122|ref|XP_002640697.1| Hypothetical protein CBG19762 [Caenorhabditis briggsae] Length = 439 Score = 220 bits (560), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 151/454 (33%), Positives = 250/454 (55%), Gaps = 37/454 (8%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66 TIFA+S+G LPSAI++ R+SGP + + ++K P+ + RI+D+ + Sbjct: 3 TIFALSSGTLPSAIAVFRVSGPQSLPILRQLSRRKVWTPKMMEFTKLYDSQRRIIDESMA 62 Query: 67 IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126 + FP P++FTGED+AEF +HG AV L+++ N+R A GEF+RRAF NGK+ + Sbjct: 63 VYFPGPKTFTGEDTAEFFLHGSQAVAQKFATCLSEIENVREAKRGEFTRRAFHNGKMSIS 122 Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186 E L LI S TE +RR + M G ++ + KL I S + +DF E ++ Sbjct: 123 EVRGLDRLIRSRTEKERRAAFGQMRGGTRAV--EIRKKLVEILSKLFVIIDFGEHVALEL 180 Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246 ++++ + +IL +I+ I + E + G +IV+ G N+GKSS+ N LA DVAI Sbjct: 181 SAAQKDVAEIL---AEINRLILAWEGAERAQRGLEIVLYGRPNSGKSSILNQLAHDDVAI 237 Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLILLL 305 V++IPGTTRD L + + G +++DTAGIR T+D++E EGI+R +E+AD+I + Sbjct: 238 VSEIPGTTRDSLVTTIQINGIRCRLTDTAGIRPHTNDVIEAEGIRRAQRRLESADVICFV 297 Query: 306 KEINSK-----------KEISFPKNIDFIFIGTKSDLYSTYTEEYD---HLISSF--TGE 349 + S+ K++ P++ + + K+DL Y E H++SS + E Sbjct: 298 VDPESRSDDVANILEDVKKLKNPES-KVLIVKNKADLKLPYPEVSSSGIHVVSSHATSSE 356 Query: 350 GLEELINKIKSILSNKFKKLPFSIPSH--KRHLYHLSQTVRYLEMASLNEK-DCGLDIIA 406 G ++L + S++ + F + + ++ L+ ++ + A + + + GL+ IA Sbjct: 357 GCQKLRETLGSLVDQLCPETNFLLDAELLRKCSDELTCSMLCQDAAIMCQHIEKGLEHIA 416 Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E ++ G +T E +LD IFS+FCIGK Sbjct: 417 E------LTQGTVT-----ESVLDGIFSQFCIGK 439 >gi|302306610|ref|NP_983009.3| ABR063Cp [Ashbya gossypii ATCC 10895] gi|299788599|gb|AAS50833.3| ABR063Cp [Ashbya gossypii ATCC 10895] Length = 493 Score = 220 bits (560), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 157/479 (32%), Positives = 254/479 (53%), Gaps = 50/479 (10%) Query: 7 TIFAVSTG-ALPSAISIIRLSGPSCFQVCEFIC-KKKKPFPRKASLRYFFGLDGR----I 60 TI+A+ST SAI+++R+SG V E + K+ P PR+ASLR + Sbjct: 20 TIYALSTPMGQKSAIAVVRVSGTHARLVYEKLTDSKRPPTPRRASLRNLYSPQSAPEKVF 79 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN------LRLANPGEFS 114 LD L + F P +FTGED E HVHGG AVV G+L+ + + + +R A GEFS Sbjct: 80 LDSALTLFFEQPGTFTGEDILELHVHGGKAVVAGVLDAIGALHDESAGVQIRYAEAGEFS 139 Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174 RRAF+NG+ DL E E + +LI +ETE QRR ++ G+ L+ W ++ + + A Sbjct: 140 RRAFQNGRFDLTEIEGIGELIDAETETQRRSAISSFRGQNRLLFAGWRQQIVDNIAQVAA 199 Query: 175 DLDFSEEEDVQNFSS--KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232 +DF ++ ++Q+ + + V + L+ +++ + + I+++G ++ +LG NAGK Sbjct: 200 IIDFGDDTEIQDIDAILEGVRCSVKALRREVADFVERVTRSTILQSGIRLSVLGAPNAGK 259 Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKR 291 SSL N + K D +IV+ IPGTTRD + + LD+ GY V ++DTAG+R + D +E GI R Sbjct: 260 SSLVNCITKDDTSIVSSIPGTTRDAIDVPLDINGYKVILTDTAGVRAHSTDPIELIGIAR 319 Query: 292 TFLEVENADLILLLKEINSKKEIS---------FPKNIDFIFIGTKSDLYSTYTEEYDH- 341 +D++LL+ + + +S + I KSDL +Y Sbjct: 320 AQERTARSDIVLLVVDATAATPLSPALRSHLRDLTDKCRLVVI-NKSDLVPPSRLKYIQT 378 Query: 342 -------------LISSFTGEGLEELINKIKS---ILSNKFKKLPFSIPSHKRHLYH--- 382 +IS +GL+ L++ + S L++ P +I + R + Sbjct: 379 QLAAELPDCGPALVISCKQRDGLDALVHALTSHFTDLASCAAADPIAISARARDILRQDV 438 Query: 383 LSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITG-CVDVEQLLDIIFSKFCIGK 440 L+ +L +AS E +D+ +E+LR A+ +G ITG V VE++L ++FS FC+GK Sbjct: 439 LAGLDGFLRLASSAE----VDVASESLRSAADGIGTITGDAVGVEEVLGVVFSNFCVGK 493 >gi|303228568|ref|ZP_07315395.1| tRNA modification GTPase TrmE [Veillonella atypica ACS-134-V-Col7a] gi|302516747|gb|EFL58662.1| tRNA modification GTPase TrmE [Veillonella atypica ACS-134-V-Col7a] Length = 461 Score = 220 bits (560), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 151/460 (32%), Positives = 256/460 (55%), Gaps = 28/460 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGLD---G 58 +TI A++T + IIR+SG F + + K P + +++Y +D Sbjct: 5 DTIAAIATPPGIGGVGIIRVSGKDSFPIVNSLFKSAGTVPLMDRQNRTIQYGTIVDPATN 64 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 + +D+ L+++ P S+T ED E HGGI V IL+ L ++R+A GEF++RAF Sbjct: 65 KTIDEVLVLLMKGPHSYTAEDVVEIQCHGGIVSVRQILKLLVNH-DVRMAEAGEFTKRAF 123 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG+IDL +AE++ D+I ++TE L++ + G +SS ++L + + +E +D+ Sbjct: 124 MNGRIDLTQAEAIIDIIEAKTEESLSLAVSQLDGTVSSFVKDVREQLIAMIAHLEVTIDY 183 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 EE D+++ +S+EV + + + +S G +IR+G VI+G NAGKSSL NA Sbjct: 184 PEE-DIEDVTSQEVREQLEPILKAMDELLSTANTGRLIRDGITTVIVGRPNAGKSSLMNA 242 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L +++ AIVTDIPGTTRD + + +EG +++ DTAGIR+T D VE G++R + Sbjct: 243 LLRENRAIVTDIPGTTRDSIEEYMTVEGISLRLIDTAGIRDTQDTVEALGVERARDYINK 302 Query: 299 ADLILLLKEIN---SKKEISFPKNI---DFIFIGTKSDLYSTYTEEY--DH-------LI 343 AD++L + + + + +EI ++ + + + KSD+ T+E +H I Sbjct: 303 ADIVLCVIDGSTPLTSEEIEILTSVSGLNTMVLLNKSDVAQVVTDENIEEHGNFTAIERI 362 Query: 344 SSFTGEGLEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402 S+ GEG L ++ ++ + K+ ++ S+ RH+ + Q +E A L+ D G+ Sbjct: 363 SAKDGEGSAVLSKWVQELVYGGRVKQDNSAMISNVRHISLMEQAKAQVEEA-LSSIDMGM 421 Query: 403 --DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D +A +LR A LG ITG E ++D +FS+FC+GK Sbjct: 422 PVDFVATDLRSAWELLGDITGDTIRESMIDELFSRFCLGK 461 >gi|330721877|gb|EGG99837.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [gamma proteobacterium IMCC2047] Length = 399 Score = 220 bits (560), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 146/404 (36%), Positives = 227/404 (56%), Gaps = 28/404 (6%) Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 ++D+G+ ++F +P SFTGE E HGG V++ +L+E+ K+ R A PGEFS RAF Sbjct: 1 MIDQGVALLFTAPASFTGEHVLELQGHGGQVVMDLLLKEIIKL-GARQARPGEFSERAFL 59 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 N KIDL +AE++ADLI S +E R +++ + GE S ++ L +R ++EA +DF Sbjct: 60 NNKIDLTQAEAIADLIDSSSEQAARNAVKSLQGEFSKRIHDLVEALIMLRMYVEAAIDFP 119 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 EEE + + +V +D+ + + + + G ++ G +V+ G NAGKSSL N L Sbjct: 120 EEE-IDFLADSKVGSDLNEVIQRLGRVLVEAHQGAALQEGMNVVMAGLPNAGKSSLLNRL 178 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 + KD AIV +IPGTTRDVL + ++G + I D AG+R++ D +E+EGI+R + E++ A Sbjct: 179 SGKDSAIVINIPGTTRDVLREHIHIDGMPLHIIDPAGLRDSPDEIEQEGIRRAWSEIKKA 238 Query: 300 DLILLLKEINSKKEISFPKNI--DFI----------FIGTKSDLYST----YTEEYDH-- 341 D ILL+ + ++ KE + P +I DF+ I K DL + E D Sbjct: 239 DRILLVVDASNVKE-THPHDIWPDFVDHLEGLSNITVIQNKCDLLNVEPAFINAEGDQSC 297 Query: 342 ---LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLN 396 +S+ GEG++ L N +K + + + + +RHL L + +LE L Sbjct: 298 PVIRLSAKQGEGIDLLTNHLKDCMGYQAGS-EGNFSARRRHLDALERAQTFLETGQRQLQ 356 Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G +++AE+LR A L +ITG + LL IFS FCIGK Sbjct: 357 AAQAG-ELLAEDLRQAQQCLSEITGEFSSDDLLGRIFSSFCIGK 399 >gi|124006860|ref|ZP_01691690.1| tRNA modification GTPase TrmE [Microscilla marina ATCC 23134] gi|123987541|gb|EAY27250.1| tRNA modification GTPase TrmE [Microscilla marina ATCC 23134] Length = 463 Score = 220 bits (560), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 154/464 (33%), Positives = 250/464 (53%), Gaps = 32/464 (6%) Query: 2 NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL----D 57 +++TI A+ST + AI +IR+SG F VC+ + K +AS FG + Sbjct: 7 TQKEDTIVALSTPSGSGAIGVIRVSGKDTFAVCDQVFYGK-TLSEQASHTVHFGTIRNDE 65 Query: 58 GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 G+I+D+ + +F +P SFT ED E HG ++ +++ L RLA GEF++RA Sbjct: 66 GQIIDEVVAALFKAPRSFTKEDVIEVSCHGSQYIIQQVIQLLIG-KGARLAKAGEFTQRA 124 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 + NG++DL +AE++ADLI+S+++ +++M+ M G S Q ++ T + + +E +LD Sbjct: 125 YLNGRMDLAQAEAIADLIASDSKAAHQVAMKQMRGGFSKKITQLREEFTKLAALLELELD 184 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 FSEE DV+ + E+ + LK ++ LG I+NG + I+G NAGKS+L N Sbjct: 185 FSEE-DVEFANRDEMQRQLNHLKTAVTDMAQSFALGNAIKNGVPVAIVGKPNAGKSTLLN 243 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 AL ++D AIV+ IPGTTRD + ++ LEG + DTAG+RET D VE GI R F +++ Sbjct: 244 ALLQEDKAIVSAIPGTTRDSIEDEVVLEGIRFRFIDTAGLRETADEVESIGIARAFAKMK 303 Query: 298 NADLILLLKEINSKKEISFPKNI----------DFIFIGTKSDLYSTYTEEYDHLISSFT 347 + ++L + + +K + + I + K D Y+ + L Sbjct: 304 ESQILLYMFDAVEEKREDWQAQVAQLQADHPDTKVIVVANKIDEYARFDL---FLPDGVV 360 Query: 348 GEGL----EELINKIKSILSNKFKKLPFS-----IPSHKRHLYHLSQTVRYLEMASLNEK 398 G G+ + I++++ +L + S I ++ RH L T++ L Sbjct: 361 GCGISAKEHQQIDRLQQLLIEAVQAHQLSNQDQVIVTNLRHYEALQDTLKALAQVQ-QTL 419 Query: 399 DCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D GL +++A ++R A LG+ITG + LL+ IFSKFCIGK Sbjct: 420 DLGLSTEMVASDIRTAIYHLGEITGQISNNDLLEFIFSKFCIGK 463 >gi|319954737|ref|YP_004166004.1| tRNA modification gtpase trme [Cellulophaga algicola DSM 14237] gi|319423397|gb|ADV50506.1| tRNA modification GTPase trmE [Cellulophaga algicola DSM 14237] Length = 470 Score = 219 bits (559), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 162/477 (33%), Positives = 258/477 (54%), Gaps = 49/477 (10%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVC--EFICKKKKPFPRKASLRYFFG--LDG- 58 +++TI A++T + AI+IIRLSG + F+ +K K + + G +DG Sbjct: 3 QQDTIVALATPSGAGAIAIIRLSGNDAITIASNHFVSRKGKKLSNQKTHTILLGHIVDGD 62 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 RILD+ L +F P S+TGE+ E HG + I++ + R A+ GEF+ RAF Sbjct: 63 RILDEVLASIFKGPNSYTGENIVEISCHGSTYIQQEIIQLFLR-NGCRTADAGEFTLRAF 121 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NGKIDL +AE++AD+I+S+ +++++ M G S+ + +L + S IE +LDF Sbjct: 122 LNGKIDLSQAEAVADVIASDNAASHQIAIQQMRGGFSNEIKELRAELMNFASLIELELDF 181 Query: 179 SEEEDVQNFSSKEVLNDI-----LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233 SEE DV+ F+++ D+ L LK I S +G +I+NG + I+G N GKS Sbjct: 182 SEE-DVE-FANRAQFQDLINRITLVLKRLIDSF----AVGNVIKNGIPVAIVGEPNVGKS 235 Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293 +L N+L +D AIV+DI GTTRD + +L ++G + DTAGIRET DIVE GIK+TF Sbjct: 236 TLLNSLLNEDRAIVSDIAGTTRDTIEDELSIDGIGFRFIDTAGIRETQDIVEGIGIKKTF 295 Query: 294 LEVENADLILLLKE---INSKKEI------------SFPKNIDFIFIGTKSDLYSTYT-- 336 +++ A+++L L + I KK+I FP+ + + K+D +T T Sbjct: 296 EKIKQAEVVLYLIDGALIKEKKQIDALKIEIEKIKNQFPQK-SILLLVNKADKIATETTT 354 Query: 337 ---EEYDHL--------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ 385 E L I++ TGEG+E+L ++ +++ + +I ++ RH L + Sbjct: 355 LISSEMASLSAQLKTIFIAAKTGEGVEDLKEELLGLINTGALRNNETIVTNSRHYNSLLK 414 Query: 386 TVRYLEMASLNEKDCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++ D G D++A ++R A +ITG + + LL IF+ FCIGK Sbjct: 415 AFEEIQKVQYG-MDSGFSGDLLAIDIRQALFHFSEITGEISSDDLLGNIFANFCIGK 470 >gi|317035274|ref|XP_001396578.2| cytokinesis protein sepA [Aspergillus niger CBS 513.88] Length = 2210 Score = 219 bits (559), Expect = 5e-55, Method: Composition-based stats. Identities = 124/312 (39%), Positives = 189/312 (60%), Gaps = 28/312 (8%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLDGR-----I 60 TI+A+ST + +AI+++R SGP+C Q+ + +C + P PR A +R + + + Sbjct: 1654 TIYALSTASGRAAIAVVRASGPACVQIYKSLCPEAPLPRPRLAVVRTLYDPSQKPSPNTV 1713 Query: 61 LDKGLLIV-FPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN----LRLANPGEFSR 115 LD G L++ FP P++ TGED E H+HGG A+V +L +++ N +R A PGEF+R Sbjct: 1714 LDAGALVLYFPGPKTVTGEDVLELHLHGGPAIVKSVLSSISRTNNPDYTVRYAEPGEFTR 1773 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF N ++DL + E+L D +S++TE QRRL++ G S LS Y QW +L + R +EA Sbjct: 1774 RAFMNNRLDLPQIEALGDTLSADTEQQRRLAVRGASDALSKRYEQWRHQLLYARGELEAL 1833 Query: 176 LDFSE----EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAG 231 +DFSE +E ++ S V + L+ I+ HI GE++RNG K+ +LG NAG Sbjct: 1834 IDFSEDQHFDESTEDLVS-SVAAQVRALRAQIALHIQNASKGELLRNGIKVALLGAPNAG 1892 Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDD-------- 282 KSSL N + ++ AIV+ GTTRD++ + +D+ G+ K+ D AGIR E +D Sbjct: 1893 KSSLLNRIVGREAAIVSTEEGTTRDIVDVGVDIGGWYCKLGDMAGIRSEPNDPTGQKKTV 1952 Query: 283 ---IVEKEGIKR 291 VE+EGI+R Sbjct: 1953 VIGAVEQEGIRR 1964 Score = 42.0 bits (97), Expect = 0.20, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 22/136 (16%) Query: 312 KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371 ++I+ P ID G ++ Y E ++ L+ + + L+ + Sbjct: 2090 EDIASPTGID----GDENGKYDHAYWEDSLGVTHRQSSNLQRCLEHLDDFLTQTQPQSQT 2145 Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI----IAENLRLASVSLGKITG---CVD 424 +PS R H E D +DI AE+LR A+ ++ KITG D Sbjct: 2146 PMPSSSRQFAH-----------EFPETDMDMDIDIVTAAEHLRSAADTMAKITGRGESGD 2194 Query: 425 VEQLLDIIFSKFCIGK 440 VE +L ++F KFC+GK Sbjct: 2195 VEDVLGVVFEKFCVGK 2210 >gi|206890795|ref|YP_002249040.1| tRNA modification GTPase TrmE [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742733|gb|ACI21790.1| tRNA modification GTPase TrmE [Thermodesulfovibrio yellowstonii DSM 11347] Length = 460 Score = 219 bits (559), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 160/411 (38%), Positives = 240/411 (58%), Gaps = 23/411 (5%) Query: 49 SLRYFFGLDGRI---LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNL 105 ++ Y F +D +D+ L+ V +P ++T ED E + H G + IL+ + Sbjct: 54 TIHYGFIIDPSTQERVDEVLVTVMRAPNTYTREDIVEINCHAGYITLKRILD-IVLYEGA 112 Query: 106 RLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKL 165 RLA PGEF++RAF G+IDL +AES+ DLI ++TE +++++E +SG LS + D L Sbjct: 113 RLAEPGEFTKRAFLRGRIDLSQAESVIDLIRAKTEQAQKIALEHLSGRLSIKINELRDAL 172 Query: 166 THIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVIL 225 + + IEA +DF EE D+ F+ +E++ +I +K++I I + G+I R G I+ Sbjct: 173 MRVCAHIEAYIDFPEE-DIDGFTEEEIIKEITHIKDEIKKLIEGYEEGKIYREGLTTAIV 231 Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVE 285 G N GKSSL NAL KD AIVT++PGTTRD++ ++++G +KI DTAGIR+ D+VE Sbjct: 232 GKPNVGKSSLLNALLMKDRAIVTEVPGTTRDIIEEYVNIKGMPLKIVDTAGIRQAHDLVE 291 Query: 286 KEGIKRTFLEVENADLILLL----KEINSKKE--ISFPKNIDFIFIGTKSDLYSTYTEEY 339 EGIKRT VE A+L+LL+ + I+S E IS I + K D+ + + Sbjct: 292 AEGIKRTLRAVELAELVLLVLDASRPIDSLDEEIISRITQKRLIVVINKKDIKNKEFQLP 351 Query: 340 DHL-------ISSFTGEGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391 D L IS+ GEG+EEL I K+ +S K+++ + + RH L + LE Sbjct: 352 DFLKNKPTVEISALKGEGIEELKELIFKTTISGKYEQEGLVV-TKLRHKLALDSALNALE 410 Query: 392 MA--SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A S K+ L+I A LR A LG+I G V E++L++IFS+FCIGK Sbjct: 411 NAFQSFKNKEP-LEITAMFLREALGFLGQIIGVVTTEEILNLIFSEFCIGK 460 >gi|326476482|gb|EGE00492.1| mitochondrial GTPase [Trichophyton tonsurans CBS 112818] Length = 594 Score = 219 bits (559), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 128/347 (36%), Positives = 197/347 (56%), Gaps = 35/347 (10%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLDGR 59 + + TI+A+ST +AI+IIR+SGP C + + +C +K P PR A+LR + Sbjct: 40 QDEKPTTIYALSTAPGRAAIAIIRISGPDCIPIYKALCPDRKLPKPRFAALRTIYEPGKP 99 Query: 60 I-----LDKGLLIV-FPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP--------NL 105 + LD G L+ FP+P + TGED E HVHG AV+ IL + K ++ Sbjct: 100 LSADNALDSGALVFHFPAPNTVTGEDVLELHVHGSPAVIKSILSAIPKCAGPGDAPSASI 159 Query: 106 RLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKL 165 R A PGEF+RRAF N ++DL + E+L + ++++TE QRRL++ G + LS+ Y QW +L Sbjct: 160 RYAEPGEFTRRAFLNDRLDLPQIEALGNTLAADTEQQRRLAIRGTNDALSTRYEQWRKQL 219 Query: 166 THIRSFIEADLDFSEE----EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK 221 + R +EA +DFSE+ E V +F S V + L + I+ HI GE++R+G K Sbjct: 220 LYARGELEALIDFSEDQHFDESVDDFISS-VTGQVDSLLHQINLHIKNASKGELLRSGIK 278 Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--- 278 + +LG NAGKSSL N + +D AIV+ GTTRD++ + +DL G+L K D AG+R Sbjct: 279 VALLGAPNAGKSSLLNQIVGRDAAIVSSEEGTTRDIVDVGVDLGGWLCKFGDMAGLRSKL 338 Query: 279 ------------ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313 T +E+EGI+R +D+++++ + +E Sbjct: 339 SQSQLAAQGHVVSTVGKIEEEGIRRAKARALESDVVIVVLSVEGSRE 385 >gi|82752290|ref|YP_418031.1| tRNA modification GTPase TrmE [Staphylococcus aureus RF122] gi|123549492|sp|Q2YZB8|MNME_STAAB RecName: Full=tRNA modification GTPase mnmE gi|82657821|emb|CAI82276.1| tRNA modification GTPase [Staphylococcus aureus RF122] Length = 459 Score = 219 bits (559), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 152/462 (32%), Positives = 252/462 (54%), Gaps = 33/462 (7%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD--- 62 +TI ++ST AI I+RLSGP ++ + + K K S +G I+D Sbjct: 4 DTITSISTPMGEGAIGIVRLSGPQAVEIADKLYKGKHLLNDVPSHTINYG---HIIDPES 60 Query: 63 -----KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 + ++ V +P++FT ED E + HGGI +N +LE L RLA PGEF++RA Sbjct: 61 KEVVEEVMVSVLRAPKTFTREDIIEINCHGGILTINRVLE-LTMTYGARLAEPGEFTKRA 119 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NG+IDL +AE++ D + S+T+ +++M + G LS L + + I + +E ++D Sbjct: 120 FLNGRIDLSQAEAVMDFVRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEILAQVEVNID 179 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 + E +DV++ +++ +L +K +I+ + G G+I+R G VI+G N GKSS+ N Sbjct: 180 YPEYDDVEDATTEFLLEQSKEIKQEINRLLDTGAQGKIMREGLSTVIVGKPNVGKSSMLN 239 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 L + + AIVT++ GTTRDVL +++ G +++ DTAGIRET+DIVEK G++R+ + Sbjct: 240 NLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRETEDIVEKIGVERSRKALS 299 Query: 298 NADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTY-TEEYDHLI----- 343 ADLIL + +N+ + ++ KN D I I K DL E +I Sbjct: 300 QADLILFV--LNNNEALTQEDYTLYEVVKNEDVIVIVNKMDLEQNIDINEVKDMIGDTPL 357 Query: 344 ---SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEK 398 S EG++EL +I+ + + + + S+ RH+ L Q + ++ A E Sbjct: 358 IQTSMLKQEGIDELEIQIRDLFFGGEVQNQDMTYVSNSRHISLLKQARQTIQDAIDAAES 417 Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+I G ++L+D +FS+FC+GK Sbjct: 418 GVPMDMVQIDLTRTWEILGEIIGETASDELIDQLFSQFCLGK 459 >gi|314935198|ref|ZP_07842551.1| tRNA modification GTPase TrmE [Staphylococcus hominis subsp. hominis C80] gi|313656533|gb|EFS20272.1| tRNA modification GTPase TrmE [Staphylococcus hominis subsp. hominis C80] Length = 459 Score = 219 bits (559), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 153/459 (33%), Positives = 257/459 (55%), Gaps = 27/459 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD---GRI 60 +TI ++ST AI I+RLSGP ++ + + K KK S +G +D + Sbjct: 4 DTITSISTPMGEGAIGIVRLSGPEAVEIGDKLYKGKKKLKDVPSHTINYGHIIDPETDEV 63 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +++ ++ V +P++FT ED E + HGGI +N ILE L R+A PGE+++RAF N Sbjct: 64 VEEVMISVLRAPKTFTREDIIEINCHGGILTINRILE-LTMTHGARMAEPGEYTKRAFLN 122 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G+IDL +AE++ D I S+T+ +++M + G LS L Q + I + +E ++D+ E Sbjct: 123 GRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKQQRQSILEILAQVEVNIDYPE 182 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 +DV++ +++ +L +KN+I + G G+I+R G VI+G N GKSS+ N L Sbjct: 183 YDDVEDATTEFLLAQSKKIKNEIDQLLETGTQGKIMREGLSTVIVGKPNVGKSSMLNNLI 242 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 + + AIVT++ GTTRDVL +++ G +++ DTAGIR+T+DIVEK G++R+ + AD Sbjct: 243 QDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDIVEKIGVERSRKALSEAD 302 Query: 301 LILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTY-TEEYDHLI-------- 343 LIL + +N+ + ++ KN D I I K+DL EE +I Sbjct: 303 LILFV--LNNNEPLTEEDRTLYEVIKNEDAIVIVNKTDLERRLDIEEVKTMIGDTPLIQT 360 Query: 344 SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCG 401 S EG++EL +I+ + + + + S+ RH+ L Q + ++ A E Sbjct: 361 SMLKQEGVDELELQIRDLFFGGEVQNQDMTYVSNSRHISLLKQARQTIQDAIDAAEAGIP 420 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+I G ++L++ +FS+FC+GK Sbjct: 421 MDMVQIDLTRTWELLGEIIGESASDELINQLFSQFCLGK 459 >gi|228474138|ref|ZP_04058875.1| tRNA modification GTPase TrmE [Staphylococcus hominis SK119] gi|228271833|gb|EEK13170.1| tRNA modification GTPase TrmE [Staphylococcus hominis SK119] Length = 459 Score = 219 bits (559), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 153/459 (33%), Positives = 257/459 (55%), Gaps = 27/459 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD---GRI 60 +TI ++ST AI I+RLSGP ++ + + K KK S +G +D + Sbjct: 4 DTITSISTPMGEGAIGIVRLSGPEAVEIGDKLYKGKKKLKDVPSHTINYGHIIDPETDEV 63 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +++ ++ V +P++FT ED E + HGGI +N ILE L R+A PGE+++RAF N Sbjct: 64 VEEVMISVLRAPKTFTREDIIEINCHGGILTINRILE-LTMTHGARMAEPGEYTKRAFLN 122 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G+IDL +AE++ D I S+T+ +++M + G LS L Q + I + +E ++D+ E Sbjct: 123 GRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKQQRQSILEILAQVEVNIDYPE 182 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 +DV++ +++ +L +KN+I + G G+I+R G VI+G N GKSS+ N L Sbjct: 183 YDDVEDATTEFLLAQSKKIKNEIDQLLETGTQGKIMREGLSTVIVGKPNVGKSSMLNNLI 242 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 + + AIVT++ GTTRDVL +++ G +++ DTAGIR+T+DIVEK G++R+ + AD Sbjct: 243 QDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDIVEKIGVERSRKALSEAD 302 Query: 301 LILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTY-TEEYDHLI-------- 343 LIL + +N+ + ++ KN D I I K+DL EE +I Sbjct: 303 LILFV--LNNNEPLTEEDRTLYEVIKNEDAIVIVNKTDLERRLDIEEVKTMIGDTPLIQT 360 Query: 344 SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCG 401 S EG++EL +I+ + + + + S+ RH+ L Q + ++ A E Sbjct: 361 SMLKQEGIDELELQIRDLFFGGEVQNQDMTYVSNSRHISLLKQARQTIQDAIDAAEAGIP 420 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+I G ++L++ +FS+FC+GK Sbjct: 421 MDMVQIDLTRTWELLGEIIGESASDELINQLFSQFCLGK 459 >gi|148243337|ref|YP_001228494.1| tRNA modification GTPase TrmE [Synechococcus sp. RCC307] gi|205829180|sp|A5GW82|MNME_SYNR3 RecName: Full=tRNA modification GTPase mnmE gi|147851647|emb|CAK29141.1| tRNA modification GTPase [Synechococcus sp. RCC307] Length = 453 Score = 219 bits (559), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 153/442 (34%), Positives = 242/442 (54%), Gaps = 37/442 (8%) Query: 22 IIRLSGPSCFQVCEFICKKK-KPFPRKA--SLRYFFG-----LDGRILDKGLLIVFPSPE 73 I+R+SGP E I ++ +P +++ S R +G +G ++D+ LL++ +P Sbjct: 26 IVRISGPQA----EAIGRQLFQPAGKQSWESHRVLYGHVNDPANGDVVDEVLLLLMRAPR 81 Query: 74 SFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLAD 133 SFT E EFH HGG+ V +LE L R A PGEFS+RAF NG++DL AE++++ Sbjct: 82 SFTRETVVEFHGHGGLVAVQRLLE-LVLAAGARRALPGEFSQRAFLNGRLDLTRAEAISE 140 Query: 134 LISSETEMQRRLSMEGMSGELS----SLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSS 189 L+S+ + L+M G+ G L +L Q +D+L + EA +DF EED+ + Sbjct: 141 LVSARSRRAAELAMAGLDGGLQQRIEALRDQLLDQLCEL----EARVDF--EEDLPSLDG 194 Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249 V + ++ + + G+ +++R+G ++ I+G N GKSSL NAL+ + AIVTD Sbjct: 195 AAVCTALRDVQQALDQLVLDGQQAQLLRDGLRVAIIGRPNVGKSSLLNALSGHERAIVTD 254 Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI- 308 +PGTTRD+L DL L+G + + DTAGIR T D VE+ GI+R+ +AD ++LL ++ Sbjct: 255 LPGTTRDLLDYDLVLQGVPITLLDTAGIRSTADRVEQLGIERSRAAFASADAVVLLYDLS 314 Query: 309 ------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSI- 361 +S P + +G KSDL + IS+ +G GL EL + + + Sbjct: 315 RGWSPDDSALRNEVPDGTPLLVVGNKSDLAAEPATTQGLAISARSGLGLAELSSALLKLC 374 Query: 362 -LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL--DIIAENLRLASVSLGK 418 LS + + L ++ ++R + L + +D GL D +LR A +LG+ Sbjct: 375 GLSGEGQGLLLAL--NQRQCDLAAAASAALGRSQQAARD-GLPWDFWTIDLREAIRALGE 431 Query: 419 ITGCVDVEQLLDIIFSKFCIGK 440 ITG E +LD +FS+FCIGK Sbjct: 432 ITGAEITEAVLDRVFSRFCIGK 453 >gi|222153198|ref|YP_002562375.1| tRNA modification GTPase TrmE [Streptococcus uberis 0140J] gi|222114011|emb|CAR42339.1| tRNA modification GTPase TrmE [Streptococcus uberis 0140J] Length = 458 Score = 219 bits (559), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 147/459 (32%), Positives = 255/459 (55%), Gaps = 22/459 (4%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLD-- 57 + E +TI A+ST AI I+RLSG + + + K K ++ Y LD Sbjct: 3 ITKEFDTITAISTPLGEGAIGIVRLSGTEALAIAKKVFKGKDLEAVASHTINYGHILDPE 62 Query: 58 -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 ILD+ ++ V P++FT ED E + HGGIAV N IL+ L K R+A PGEF++R Sbjct: 63 KNEILDEVMVTVMKEPKTFTREDVVEINTHGGIAVTNEILQLLIK-NGARMAEPGEFTKR 121 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NG++DL +AE++ D+I ++T+ ++++ + G L L ++ + + +E ++ Sbjct: 122 AFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLKELINSTRQEILNTLAQVEVNI 181 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D+ E +DV+ ++ + +N + + K G+I+R G I+G N GKSSL Sbjct: 182 DYPEYDDVEEMTTALMREKTQEFQNLLEQLLRTAKRGKILREGLSTAIIGRPNVGKSSLL 241 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N L +++ AIVTDI GTTRDV+ ++++G +K+ DTAGIR+TDDIVEK G++R+ + Sbjct: 242 NNLLREEKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAGIRDTDDIVEKIGVERSKKAL 301 Query: 297 ENADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTYTEEY---DHL-IS 344 ADL+LL+ +N+ + ++ K + I + K+DL ++ D++ IS Sbjct: 302 NEADLVLLV--LNASESLTEQDRVLLDLSKESNRIILLNKTDLPQAIEKDQIPEDYIEIS 359 Query: 345 SFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCG 401 E ++++ ++I + + + + S+ RH+ + Q V+ L+ + E Sbjct: 360 VLKNENIDQIEDRINDLFFENAGLVEQDATYLSNARHISLIEQAVQSLQAVNEGLEMGMP 419 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+ITG ++L+ +FS+FC+GK Sbjct: 420 VDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 458 >gi|326484082|gb|EGE08092.1| tRNA modification GTPase [Trichophyton equinum CBS 127.97] Length = 594 Score = 219 bits (559), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 128/347 (36%), Positives = 197/347 (56%), Gaps = 35/347 (10%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLDGR 59 + + TI+A+ST +AI+IIR+SGP C + + +C +K P PR A+LR + Sbjct: 40 QDEKPTTIYALSTAPGRAAIAIIRISGPDCIPIYKALCPDRKLPKPRFAALRTIYEPGKP 99 Query: 60 I-----LDKGLLIV-FPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP--------NL 105 + LD G L+ FP+P + TGED E HVHG AV+ IL + K ++ Sbjct: 100 LSADNALDSGALVFHFPAPNTVTGEDVLELHVHGSPAVIKSILSAIPKCAGPGDAPSASI 159 Query: 106 RLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKL 165 R A PGEF+RRAF N ++DL + E+L + ++++TE QRRL++ G + LS+ Y QW +L Sbjct: 160 RYAEPGEFTRRAFLNDRLDLPQIEALGNTLAADTEQQRRLAIRGTNDALSTRYEQWRKQL 219 Query: 166 THIRSFIEADLDFSEE----EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK 221 + R +EA +DFSE+ E V +F S V + L + I+ HI GE++R+G K Sbjct: 220 LYARGELEALIDFSEDQHFDESVDDFISS-VTGQVDSLLHQINLHIKNASKGELLRSGIK 278 Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--- 278 + +LG NAGKSSL N + +D AIV+ GTTRD++ + +DL G+L K D AG+R Sbjct: 279 VALLGAPNAGKSSLLNQIVGRDAAIVSSEEGTTRDIVDVGVDLGGWLCKFGDMAGLRSKL 338 Query: 279 ------------ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313 T +E+EGI+R +D+++++ + +E Sbjct: 339 SQSQLAAQGHVVSTVGKIEEEGIRRAKARALESDVVIVVLSVEGSRE 385 >gi|126651990|ref|ZP_01724182.1| tRNA modification GTPase [Bacillus sp. B14905] gi|126591259|gb|EAZ85368.1| tRNA modification GTPase [Bacillus sp. B14905] Length = 461 Score = 219 bits (559), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 154/461 (33%), Positives = 255/461 (55%), Gaps = 25/461 (5%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFG--LDGR 59 E +TI A+ST AI+I+RLSG + + I K K K S +G +D + Sbjct: 2 EFDTIAAISTPMGEGAIAIVRLSGDEAVAIADKIFKSPGGKSLTTKDSHTIHYGHLVDPK 61 Query: 60 ---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 ++++ +L + P++FT ED E + HGG+ VN +L+ LA RLA PGEF++R Sbjct: 62 TKEVVEEVMLSLMRGPKTFTREDVVEINCHGGLVSVNRVLQ-LALTNGARLAEPGEFTKR 120 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NG+IDL +AE++ DLI ++T+ +++ M G+LS L G L + +E ++ Sbjct: 121 AFLNGRIDLSQAEAVMDLIRAKTDRAMNVALGQMDGKLSRLIGDLRQALLETLAQVEVNI 180 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D+ E +DV+ + ++ +++++I + G+I+R G VILG N GKSSL Sbjct: 181 DYPEYDDVEEMTVPVLVEKCTWVRDEIIKLLQTSSQGKILREGLSTVILGRPNVGKSSLL 240 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N+L +++ AIVTDI GTTRD++ +++ G +++ DTAGIRET+DIVE+ G++R+ + Sbjct: 241 NSLVQENKAIVTDIAGTTRDIIEEYVNVRGVPLRLVDTAGIRETEDIVERIGVERSREAL 300 Query: 297 ENADLILLL----KEINSKKEISFP--KNIDFIFIGTKSDLYS----TYTEEY--DHLI- 343 ADLIL + E+ ++ E F + +D+I I K+DL +E H I Sbjct: 301 RGADLILFVLNYADELTAEDERLFETIEAMDYIVIINKTDLPQKINLARVKELAGKHRIV 360 Query: 344 --SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKD 399 S EG+ EL I ++ + + + S+ RH+ L Q +E A + + Sbjct: 361 TTSLLQEEGVTELEEAIAALFFEGQLEAGDLTYVSNARHIALLHQAQATVEDAIAAAQAG 420 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ ++ LG+I G E L++ +FS+FC+GK Sbjct: 421 VPVDMVQIDVTRTWELLGEIIGDTVQESLINQLFSQFCLGK 461 >gi|169830197|ref|YP_001700355.1| tRNA modification GTPase trmE [Lysinibacillus sphaericus C3-41] gi|205415777|sp|B1HPM3|MNME_LYSSC RecName: Full=tRNA modification GTPase mnmE gi|168994685|gb|ACA42225.1| Probable tRNA modification GTPase trmE [Lysinibacillus sphaericus C3-41] Length = 461 Score = 219 bits (559), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 154/461 (33%), Positives = 255/461 (55%), Gaps = 25/461 (5%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFG--LDGR 59 E +TI A+ST AI+I+RLSG + + I K K K S +G +D + Sbjct: 2 EFDTIAAISTPMGEGAIAIVRLSGDEAVAIADKIFKSPGGKSLTTKDSHTIHYGHLVDPK 61 Query: 60 ---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 ++++ +L + P++FT ED E + HGG+ VN +L+ LA RLA PGEF++R Sbjct: 62 TNEVVEEVMLSLMRGPKTFTREDVVEINCHGGLVSVNRVLQ-LALTNGARLAEPGEFTKR 120 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NG+IDL +AE++ DLI ++T+ +++ M G+LS L G L + +E ++ Sbjct: 121 AFLNGRIDLSQAEAVMDLIRAKTDRAMNVALGQMDGKLSRLIGDLRQALLETLAQVEVNI 180 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D+ E +DV+ + ++ +++++I + G+I+R G VILG N GKSSL Sbjct: 181 DYPEYDDVEEMTVPVLVEKCTWVRDEIIKLLQTSSQGKILREGLSTVILGRPNVGKSSLL 240 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N+L +++ AIVTDI GTTRD++ +++ G +++ DTAGIRET+DIVE+ G++R+ + Sbjct: 241 NSLVQENKAIVTDIAGTTRDIIEEYVNVRGVPLRLVDTAGIRETEDIVERIGVERSREAL 300 Query: 297 ENADLILLL----KEINSKKEISFP--KNIDFIFIGTKSDLYS----TYTEEY--DHLI- 343 ADLIL + E+ ++ E F + +D+I I K+DL +E H I Sbjct: 301 RGADLILFVLNYADELTAEDERLFETIEAMDYIVIINKTDLPQKINLARVKELAGKHRIV 360 Query: 344 --SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKD 399 S EG+ EL I ++ + + + S+ RH+ L Q +E A + + Sbjct: 361 TTSLLQEEGVTELEEAIAALFFEGQIEAGDLTYVSNARHIALLHQAQATVEDAIAAAQAG 420 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ ++ LG+I G E L++ +FS+FC+GK Sbjct: 421 VPVDMVQIDVTRTWELLGEIIGDTVQESLINQLFSQFCLGK 461 >gi|315925604|ref|ZP_07921814.1| tRNA modification GTPase TrmE [Pseudoramibacter alactolyticus ATCC 23263] gi|315621145|gb|EFV01116.1| tRNA modification GTPase TrmE [Pseudoramibacter alactolyticus ATCC 23263] Length = 457 Score = 219 bits (559), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 150/457 (32%), Positives = 256/457 (56%), Gaps = 24/457 (5%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLR-------YFFGL 56 + + I A++T + + I+R+SG V + + + + AS + + Sbjct: 5 QDDVIAAIATPSGVGGVGIVRISGKDAIAVADRVYQNASD-QQLASFETHTIHYGHCYDA 63 Query: 57 DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 G+ +D+ L+ + +P S+T ED E + HGG ++ +L+ + + RLA+PGEF+RR Sbjct: 64 QGKRIDEVLVSIMKAPRSYTAEDVVEINCHGGPVALHAVLDAVIR-AGARLADPGEFTRR 122 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NG+IDL +AE+++D+I ++T + S+ +SG LS Y +L H+ +FI+A + Sbjct: 123 AFVNGRIDLTQAEAVSDIIEAKTAIGLAYSVNQLSGGLSKKYQAVDAELLHLMTFIDAAI 182 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D+ E D++ + + I L + + + ++G+I RNG VILG N GKSSL Sbjct: 183 DYPEY-DIETVTGDTLRRSIDGLIVSVDALLDSAQMGKIYRNGVDTVILGEPNVGKSSLL 241 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N L ++D A+VTDIPGTTRDV+ +++EG I DTAGIRETDD+VEK G++++ + Sbjct: 242 NKLIREDKALVTDIPGTTRDVVEAYINIEGIPFHIIDTAGIRETDDVVEKLGVEKSKQMM 301 Query: 297 ENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYS---TYTEEYDHLISSFT 347 + A+LIL++ +++ + I+ ++ +I I K DL T + + +S T Sbjct: 302 DRAELILMMTDVSRETSEDEDTLITAFQDKPYIRIYNKIDLKDEVLTDLKPNEIALSIKT 361 Query: 348 GEGLEELINKIKSILS--NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL--D 403 GL+ L ++ ++++ K I S+ RH+ L Q VR +LN G+ D Sbjct: 362 ETGLDALRRQMVAMVTGNQTAKAADDVIVSNLRHVNLLRQ-VRENLTNALNGLSIGMSVD 420 Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++A +L A +L +ITG + ++D IF+ FC+GK Sbjct: 421 MVAIDLEEALENLRRITGQSLGDDIIDQIFANFCLGK 457 >gi|298695968|gb|ADI99190.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus ED133] Length = 459 Score = 219 bits (559), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 152/462 (32%), Positives = 252/462 (54%), Gaps = 33/462 (7%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD--- 62 +TI ++ST AI I+RLSGP ++ + + K K S +G I+D Sbjct: 4 DTITSISTPMGEGAIGIVRLSGPQAVEIADKLYKGKHLLNDVPSHTINYG---HIIDPES 60 Query: 63 -----KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 + ++ V +P++FT ED E + HGGI +N +LE L R+A PGEF++RA Sbjct: 61 KEVVEEVMVSVLRAPKTFTREDIIEINCHGGILTINRVLE-LTMTYGARMAEPGEFTKRA 119 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NG+IDL +AE++ D I S+T+ +++M + G LS L + + I + +E ++D Sbjct: 120 FLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEILAQVEVNID 179 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 + E +DV++ +++ +L +K +I+ + G G+I+R G VI+G N GKSS+ N Sbjct: 180 YPEYDDVEDATTEFLLEQSKEIKQEINRLLDTGAQGKIMREGLSTVIVGKPNVGKSSMLN 239 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 L + + AIVT++ GTTRDVL +++ G +++ DTAGIRET+DIVEK G++R+ + Sbjct: 240 NLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRETEDIVEKIGVERSRKALS 299 Query: 298 NADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTY-TEEYDHLI----- 343 ADLIL + +N+ + ++ KN D I I K DL E +I Sbjct: 300 QADLILFV--LNNNEALTQEDYTLYEVVKNEDVIVIVNKMDLEQNIDINEVKDMIGNTPL 357 Query: 344 ---SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEK 398 S EG++EL +I+ + + + + S+ RH+ L Q + ++ A E Sbjct: 358 IQTSMLKQEGIDELEIQIRDLFFGGEVQNQDMTYVSNSRHISLLKQARQTIQDAIDAAES 417 Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+I G ++L+D +FS+FC+GK Sbjct: 418 GVPMDMVQIDLTRTWEILGEIIGETASDELIDQLFSQFCLGK 459 >gi|15928297|ref|NP_375830.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus N315] gi|21284359|ref|NP_647447.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus MW2] gi|49484907|ref|YP_042131.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus MRSA252] gi|88196667|ref|YP_501498.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148269143|ref|YP_001248086.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus JH9] gi|150395225|ref|YP_001317900.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus JH1] gi|221141513|ref|ZP_03566006.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253316838|ref|ZP_04840051.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253730397|ref|ZP_04864562.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253733841|ref|ZP_04868006.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus TCH130] gi|257424194|ref|ZP_05600623.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus 55/2053] gi|257426871|ref|ZP_05603273.1| tRNA modification GTPase trmE [Staphylococcus aureus subsp. aureus 65-1322] gi|257429507|ref|ZP_05605894.1| tRNA modification GTPase mnmE [Staphylococcus aureus subsp. aureus 68-397] gi|257432154|ref|ZP_05608517.1| tRNA modification GTPase trmE [Staphylococcus aureus subsp. aureus E1410] gi|257435115|ref|ZP_05611166.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus M876] gi|257793536|ref|ZP_05642515.1| tRNA modification GTPase TrmE [Staphylococcus aureus A9781] gi|258411158|ref|ZP_05681437.1| tRNA modification GTPase trmE [Staphylococcus aureus A9763] gi|258420938|ref|ZP_05683872.1| tRNA modification GTPase TrmE [Staphylococcus aureus A9719] gi|258438577|ref|ZP_05689800.1| tRNA modification GTPase trmE [Staphylococcus aureus A9299] gi|258443967|ref|ZP_05692305.1| tRNA modification GTPase mnmE [Staphylococcus aureus A8115] gi|258446217|ref|ZP_05694377.1| tRNA modification GTPase mnmE [Staphylococcus aureus A6300] gi|258449124|ref|ZP_05697230.1| tRNA modification GTPase trmE [Staphylococcus aureus A6224] gi|258454398|ref|ZP_05702366.1| tRNA modification GTPase TrmE [Staphylococcus aureus A5937] gi|269204349|ref|YP_003283618.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus ED98] gi|282894277|ref|ZP_06302507.1| tRNA modification GTPase TrmE [Staphylococcus aureus A8117] gi|282907045|ref|ZP_06314893.1| tRNA modification GTPase trmE [Staphylococcus aureus subsp. aureus Btn1260] gi|282910024|ref|ZP_06317832.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus WW2703/97] gi|282912272|ref|ZP_06320068.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus WBG10049] gi|282912912|ref|ZP_06320704.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus M899] gi|282918066|ref|ZP_06325816.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus D139] gi|282921288|ref|ZP_06329006.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus C427] gi|282922540|ref|ZP_06330230.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus C101] gi|282927748|ref|ZP_06335362.1| tRNA modification GTPase TrmE [Staphylococcus aureus A10102] gi|283767788|ref|ZP_06340703.1| tRNA modification GTPase mnmE [Staphylococcus aureus subsp. aureus H19] gi|283959482|ref|ZP_06376923.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus A017934/97] gi|293497965|ref|ZP_06665819.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus 58-424] gi|293511555|ref|ZP_06670249.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus M809] gi|293550164|ref|ZP_06672836.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus M1015] gi|295406862|ref|ZP_06816666.1| tRNA modification GTPase TrmE [Staphylococcus aureus A8819] gi|295429295|ref|ZP_06821917.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus EMRSA16] gi|296275689|ref|ZP_06858196.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus MR1] gi|297209454|ref|ZP_06925852.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297245897|ref|ZP_06929759.1| tRNA modification GTPase TrmE [Staphylococcus aureus A8796] gi|297589203|ref|ZP_06947844.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus MN8] gi|300911478|ref|ZP_07128927.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus TCH70] gi|304379946|ref|ZP_07362675.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|54039754|sp|P66973|MNME_STAAW RecName: Full=tRNA modification GTPase mnmE gi|54042258|sp|P66972|MNME_STAAN RecName: Full=tRNA modification GTPase mnmE gi|73919889|sp|Q6GD92|MNME_STAAR RecName: Full=tRNA modification GTPase mnmE gi|122538496|sp|Q2FUQ2|MNME_STAA8 RecName: Full=tRNA modification GTPase mnmE gi|189036211|sp|A6U595|MNME_STAA2 RecName: Full=tRNA modification GTPase mnmE gi|189036212|sp|A5IWD7|MNME_STAA9 RecName: Full=tRNA modification GTPase mnmE gi|13702669|dbj|BAB43809.1| possible thiophene and furan oxidation protein [Staphylococcus aureus subsp. aureus N315] gi|21205803|dbj|BAB96495.1| possible thiophene and furan oxidation protein [Staphylococcus aureus subsp. aureus MW2] gi|49243036|emb|CAG41770.1| probable tRNA modification GTPase [Staphylococcus aureus subsp. aureus MRSA252] gi|87204225|gb|ABD32035.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147742212|gb|ABQ50510.1| tRNA modification GTPase trmE [Staphylococcus aureus subsp. aureus JH9] gi|149947677|gb|ABR53613.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus JH1] gi|253725877|gb|EES94606.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253728144|gb|EES96873.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus TCH130] gi|257273212|gb|EEV05314.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus 55/2053] gi|257276502|gb|EEV07953.1| tRNA modification GTPase trmE [Staphylococcus aureus subsp. aureus 65-1322] gi|257279988|gb|EEV10575.1| tRNA modification GTPase mnmE [Staphylococcus aureus subsp. aureus 68-397] gi|257283033|gb|EEV13165.1| tRNA modification GTPase trmE [Staphylococcus aureus subsp. aureus E1410] gi|257285711|gb|EEV15827.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus M876] gi|257787508|gb|EEV25848.1| tRNA modification GTPase TrmE [Staphylococcus aureus A9781] gi|257840043|gb|EEV64508.1| tRNA modification GTPase trmE [Staphylococcus aureus A9763] gi|257843128|gb|EEV67543.1| tRNA modification GTPase TrmE [Staphylococcus aureus A9719] gi|257848136|gb|EEV72128.1| tRNA modification GTPase trmE [Staphylococcus aureus A9299] gi|257850851|gb|EEV74795.1| tRNA modification GTPase mnmE [Staphylococcus aureus A8115] gi|257855043|gb|EEV77986.1| tRNA modification GTPase mnmE [Staphylococcus aureus A6300] gi|257857557|gb|EEV80452.1| tRNA modification GTPase trmE [Staphylococcus aureus A6224] gi|257863492|gb|EEV86252.1| tRNA modification GTPase TrmE [Staphylococcus aureus A5937] gi|262076639|gb|ACY12612.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus ED98] gi|269942298|emb|CBI50713.1| probable tRNA modification GTPase [Staphylococcus aureus subsp. aureus TW20] gi|282314761|gb|EFB45147.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus C101] gi|282315703|gb|EFB46087.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus C427] gi|282318351|gb|EFB48711.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus D139] gi|282323012|gb|EFB53331.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus M899] gi|282323968|gb|EFB54284.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus WBG10049] gi|282326090|gb|EFB56395.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus WW2703/97] gi|282329944|gb|EFB59465.1| tRNA modification GTPase trmE [Staphylococcus aureus subsp. aureus Btn1260] gi|282590508|gb|EFB95586.1| tRNA modification GTPase TrmE [Staphylococcus aureus A10102] gi|282763322|gb|EFC03452.1| tRNA modification GTPase TrmE [Staphylococcus aureus A8117] gi|283461667|gb|EFC08751.1| tRNA modification GTPase mnmE [Staphylococcus aureus subsp. aureus H19] gi|283471926|emb|CAQ51137.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus ST398] gi|283789074|gb|EFC27901.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus A017934/97] gi|285818375|gb|ADC38862.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Staphylococcus aureus 04-02981] gi|290919211|gb|EFD96287.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus M1015] gi|291096896|gb|EFE27154.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus 58-424] gi|291465513|gb|EFF08045.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus M809] gi|294968327|gb|EFG44352.1| tRNA modification GTPase TrmE [Staphylococcus aureus A8819] gi|295127054|gb|EFG56698.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus EMRSA16] gi|296885915|gb|EFH24850.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297177262|gb|EFH36515.1| tRNA modification GTPase TrmE [Staphylococcus aureus A8796] gi|297577714|gb|EFH96427.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus MN8] gi|300887657|gb|EFK82853.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus TCH70] gi|302334326|gb|ADL24519.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus JKD6159] gi|302752589|gb|ADL66766.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304341526|gb|EFM07436.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312436861|gb|ADQ75932.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus TCH60] gi|312831050|emb|CBX35892.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129541|gb|EFT85533.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus CGS03] gi|315195224|gb|EFU25612.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus CGS00] gi|323439701|gb|EGA97419.1| tRNA modification GTPase TrmE [Staphylococcus aureus O11] gi|323443274|gb|EGB00891.1| tRNA modification GTPase TrmE [Staphylococcus aureus O46] gi|329315432|gb|AEB89845.1| tRNA modification GTPase mnmE [Staphylococcus aureus subsp. aureus T0131] gi|329725659|gb|EGG62138.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus 21172] gi|329731690|gb|EGG68050.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus 21189] gi|329732386|gb|EGG68736.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus 21193] Length = 459 Score = 219 bits (559), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 152/462 (32%), Positives = 252/462 (54%), Gaps = 33/462 (7%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD--- 62 +TI ++ST AI I+RLSGP ++ + + K K S +G I+D Sbjct: 4 DTITSISTPMGEGAIGIVRLSGPQAVEIADKLYKGKHLLNDVPSHTINYG---HIIDPES 60 Query: 63 -----KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 + ++ V +P++FT ED E + HGGI +N +LE L R+A PGEF++RA Sbjct: 61 KEVVEEVMVSVLRAPKTFTREDIIEINCHGGILTINRVLE-LTMTYGARMAEPGEFTKRA 119 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NG+IDL +AE++ D I S+T+ +++M + G LS L + + I + +E ++D Sbjct: 120 FLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEILAQVEVNID 179 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 + E +DV++ +++ +L +K +I+ + G G+I+R G VI+G N GKSS+ N Sbjct: 180 YPEYDDVEDATTEFLLEQSKEIKQEINRLLDTGAQGKIMREGLSTVIVGKPNVGKSSMLN 239 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 L + + AIVT++ GTTRDVL +++ G +++ DTAGIRET+DIVEK G++R+ + Sbjct: 240 NLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRETEDIVEKIGVERSRKALS 299 Query: 298 NADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTY-TEEYDHLI----- 343 ADLIL + +N+ + ++ KN D I I K DL E +I Sbjct: 300 QADLILFV--LNNNEALTQEDYTLYEVVKNEDVIVIVNKMDLEQNIDINEVKDMIGDTPL 357 Query: 344 ---SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEK 398 S EG++EL +I+ + + + + S+ RH+ L Q + ++ A E Sbjct: 358 IQTSMLKQEGIDELEIQIRDLFFGGEVQNQDMTYVSNSRHISLLKQARQTIQDAIDAAES 417 Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+I G ++L+D +FS+FC+GK Sbjct: 418 GVPMDMVQIDLTRTWEILGEIIGETASDELIDQLFSQFCLGK 459 >gi|149370691|ref|ZP_01890380.1| tRNA modification GTPase TrmE [unidentified eubacterium SCB49] gi|149356242|gb|EDM44799.1| tRNA modification GTPase TrmE [unidentified eubacterium SCB49] Length = 465 Score = 219 bits (558), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 159/468 (33%), Positives = 250/468 (53%), Gaps = 37/468 (7%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL---DGR 59 ++TI A++T A AI++IRLSG + F K +A+ G R Sbjct: 3 QDTIVALATPAGAGAIAVIRLSGSDAIAIATAMFNAVSGKKLNHQATHTVHLGHIKEGTR 62 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 ++D+ L +F +P+S+TGED EF HG + I++ L R+ANPGEF+ RAF Sbjct: 63 VVDEVLATIFKNPKSYTGEDVVEFSCHGSNYIQQEIIQ-LCLKKGARMANPGEFTLRAFI 121 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NGK+DL +AE++ADLI+S+++ +L+++ M G SS + ++L + S IE +LDF+ Sbjct: 122 NGKMDLSQAEAVADLIASDSQASHQLAIQQMRGGFSSEIKKLREELLNFASLIELELDFA 181 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 EE DV + E I + + I G +++NG + I+G N GKS+L NAL Sbjct: 182 EE-DVAFANRDEFQKLITRITQVLKRLIDSFATGNVLKNGIPVAIVGEPNVGKSTLLNAL 240 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 ++ AIV+DI GTTRD + +L++ G + DTAGIR+T D +E GIK+TF ++E A Sbjct: 241 LNEERAIVSDIAGTTRDTIEDELNIGGIAFRFIDTAGIRDTSDTIEGLGIKKTFEKMEQA 300 Query: 300 DLILLL--------KEINSKKEISFPKN-------------IDFIFIGTKSDLYSTYTEE 338 ++L L + ++ EI KN ID I S++ + + + Sbjct: 301 QVVLFLIAATQLLQDKTATQIEIEKIKNKHPQKTLVMVVNKIDQIQTKQISEVKNIHLPQ 360 Query: 339 YDHL--ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH----LYHLSQTVRYLEM 392 L IS+ TGEG+E L + ++ + +I ++ RH L L + VR E Sbjct: 361 KTVLIPISAKTGEGVETLKTTLLDFVNTGALRNNDTIVTNSRHYDALLKALEEIVRVQEG 420 Query: 393 ASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + + D++A ++R A G+ITG V ++LL IF+ FCIGK Sbjct: 421 I---DNNLSSDLMAIDIRQALYHFGEITGQVTNDELLGNIFANFCIGK 465 >gi|331266427|ref|YP_004326057.1| tRNA modification GTPase TrmE [Streptococcus oralis Uo5] gi|326683099|emb|CBZ00717.1| tRNA modification GTPase TrmE [Streptococcus oralis Uo5] Length = 457 Score = 219 bits (558), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 151/460 (32%), Positives = 262/460 (56%), Gaps = 24/460 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKAS--LRYFFGLD- 57 + E +TI A+ST AI I+RLSG F + + I K K + AS L Y +D Sbjct: 2 ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKD-LSKVASHTLNYGHIVDP 60 Query: 58 --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 G+++D+ ++ SP++FT ED E + HGGIAV N IL+ LA RLA PGEF++ Sbjct: 61 QTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 119 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG++DL +AE++ D+I ++T+ ++++ + G LS L ++ + + +E + Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 179 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +D+ E +DV+ ++ V + +++ + + G+I+R G I+G N GKSSL Sbjct: 180 IDYPEYDDVEEATTAVVREKTREFEQLLTNLLRTARRGKILREGISTAIIGRPNVGKSSL 239 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N L ++D AIVTDI GTTRDV+ +++ G +K+ DTAGIRETDDIVE+ G++R+ Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGVERSKKA 299 Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDL-YSTYTEEYDH---LISS 345 ++ ADL+LL+ + ++ + ++ + I + K+DL + T E IS Sbjct: 300 LKEADLVLLVLNASEPLAAQDRQLLEISQDTNRIILLNKTDLPEAIETSEIPEDVIRISV 359 Query: 346 FTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGL 402 + ++++ +I ++ + + + S+ RH+ + + V L+ ++NE + G+ Sbjct: 360 LKNQNIDKIEERINNLFFENAGLVEQDATYLSNARHISLIEKAVESLQ--AVNEGLELGM 417 Query: 403 --DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D++ +L LG+ITG ++L+ +FS+FC+GK Sbjct: 418 PVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457 >gi|258423240|ref|ZP_05686132.1| tRNA modification GTPase TrmE [Staphylococcus aureus A9635] gi|257846569|gb|EEV70591.1| tRNA modification GTPase TrmE [Staphylococcus aureus A9635] Length = 459 Score = 219 bits (558), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 152/462 (32%), Positives = 252/462 (54%), Gaps = 33/462 (7%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD--- 62 +TI ++ST AI I+RLSGP ++ + + K K S +G I+D Sbjct: 4 DTITSISTPMGEGAIGIVRLSGPQAVEIADKLYKGKHLLNDVPSHTINYG---HIIDPES 60 Query: 63 -----KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 + ++ V +P++FT ED E + HGGI +N +LE L R+A PGEF++RA Sbjct: 61 KEVVEEVMVSVLRAPKTFTREDIIEINCHGGILTINRVLE-LTMTYGARMAEPGEFTKRA 119 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NG+IDL +AE++ D I S+T+ +++M + G LS L + + I + +E ++D Sbjct: 120 FLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEILAQVEVNID 179 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 + E +DV++ +++ +L +K +I+ + G G+I+R G VI+G N GKSS+ N Sbjct: 180 YPEYDDVEDATTEFLLEQSKEIKQEINRLLDTGAQGKIMREGLSTVIVGKPNVGKSSMLN 239 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 L + + AIVT++ GTTRDVL +++ G +++ DTAGIRET+DIVEK G++R+ + Sbjct: 240 NLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRETEDIVEKIGVERSRKALS 299 Query: 298 NADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTY-TEEYDHLI----- 343 ADLIL + +N+ + ++ KN D I I K DL E +I Sbjct: 300 QADLILFV--LNNNEALTQEDYTLYEVVKNEDVIVIVNKMDLEQNIDINEVKDMIGDTPL 357 Query: 344 ---SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEK 398 S EG++EL +I+ + + + + S+ RH+ L Q + ++ A E Sbjct: 358 IQTSMLKQEGIDELEIQIRDLFFGGEVQNQDMTYVSNSRHISLLKQARQTIQDAIDAAES 417 Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+I G ++L+D +FS+FC+GK Sbjct: 418 GVPMDMVQIDLTRTWEILGEIIGETASDELIDQLFSQFCLGK 459 >gi|332664864|ref|YP_004447652.1| tRNA modification GTPase mnmE [Haliscomenobacter hydrossis DSM 1100] gi|332333678|gb|AEE50779.1| tRNA modification GTPase mnmE [Haliscomenobacter hydrossis DSM 1100] Length = 458 Score = 219 bits (558), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 163/465 (35%), Positives = 254/465 (54%), Gaps = 40/465 (8%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL----DGRIL 61 +TI A++T AI +IRLSGP Q+ + + KK ++AS FG IL Sbjct: 4 DTIVALATPPGIGAIGVIRLSGPQAIQIVDAVFYGKK-LDKQASHTIHFGTIRDEQDHIL 62 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKM---PNLRLANPGEFSRRAF 118 D+ L +F P S+TGE+ E HG N I++EL ++ RLA PGEF+ RAF Sbjct: 63 DEVLASLFVEPRSYTGENVVEISCHGS----NYIIQELIRLFIRKGARLAQPGEFTLRAF 118 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG++DL +AE++ADLI+S +E ++++++ + G +SS + +L S IE +LDF Sbjct: 119 LNGQMDLSQAEAVADLIASSSEAAQQVAIKQLRGGISSEIKKLRQELIDFASLIELELDF 178 Query: 179 SEEEDVQNFSSKEVLNDIL-FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 EE DV+ F++++ L D++ L + + +LG I+ G VI G NAGKS+L N Sbjct: 179 GEE-DVE-FANRDQLRDLVEKLIRLMHKLLDSFQLGNAIKEGVNTVIAGRPNAGKSTLLN 236 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 AL ++ AIV++I GTTRD + L+++G +I DTAGIRE D +E GI++T +V Sbjct: 237 ALLNEERAIVSEIAGTTRDTIEESLNIQGIQFRIIDTAGIREASDTIEAIGIQKTLEKVR 296 Query: 298 NADLIL----LLKEINSKKEISFPK----NIDFIFIGTKSDLYSTYTEEYDHL------- 342 + ++L ++K ++ E + N + + K DL + YT EY H Sbjct: 297 QSAVLLYIFDVIKTQPAQLEADLAQLLHPNTQLLVVANKMDL-NPYT-EYQHYANPHFSA 354 Query: 343 -----ISSFTGEGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396 IS+ +E L ++ ++++SN+ + +I S+ RH L + LE Sbjct: 355 EQWIPISAANEMNIEYLKERLYQTVVSNEV-SMDAAIVSNVRHYEALQKAKESLEAVIQG 413 Query: 397 -EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D IA ++R + LG+ITG + E LLD IFS+FCIGK Sbjct: 414 LSSAVTTDFIAMDIRHSLAYLGEITGEISTEDLLDNIFSRFCIGK 458 >gi|94984585|ref|YP_603949.1| tRNA modification GTPase TrmE [Deinococcus geothermalis DSM 11300] gi|205829146|sp|Q1J154|MNME_DEIGD RecName: Full=tRNA modification GTPase mnmE gi|94554866|gb|ABF44780.1| tRNA modification GTPase trmE [Deinococcus geothermalis DSM 11300] Length = 439 Score = 219 bits (558), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 141/449 (31%), Positives = 240/449 (53%), Gaps = 31/449 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGL----DGRI 60 +TI A++T + + I+R+SGP + + + +++P + R+ FG DG + Sbjct: 8 DTIAAIATAPGSAGVGIVRISGPDALGIADGAFRGRRRPSATRGG-RFLFGQLVAGDGEV 66 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+GL +VF P S+TGED AE HG AV+ +L + ++ R A PGEF+ RA+ Sbjct: 67 LDEGLCLVFRGPHSYTGEDVAELQTHGSPAVLARVLSRVLEL-GARPARPGEFTLRAYLA 125 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G++DL +AE++ +L+++ TE RR + G+SG L + +T + ++A LD+ E Sbjct: 126 GRLDLAQAEAVLELVNAGTETARRQAALGLSGALGERVERIAAHVTRTLAALQAMLDYPE 185 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E ++ + + ++ + + + G++ G ++ ++G NAGKSSL NAL Sbjct: 186 E----GVPDEDRTVPLAAAEAELHALVGTARAGQVATRGARLALIGRPNAGKSSLLNALL 241 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 + +IVT IPGTTRD L L L G V + DTAG+RET D VE G+++ E+AD Sbjct: 242 GYERSIVTPIPGTTRDYLEAQLSLAGVPVTLVDTAGLRETGDEVEAAGVRQAVRLAESAD 301 Query: 301 LILLLKEINSKKE---ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINK 357 L+L+L++ + ++ P+ + + TK+DL + +T+ +S+ TG+GL L + Sbjct: 302 LVLVLEDGSQPRDHLPAELPRETRMLRVRTKADLPAAWTDPGALDVSAVTGQGLSALRDA 361 Query: 358 IKSIL------SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411 I + L + + +R L H+ Q R SL + G + + E LR Sbjct: 362 IHTALIGDAAQGEAWLTTERQADAARRALTHI-QAAR-----SLPDDLAGYE-LEEALR- 413 Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +L +TG + ++D +F FC+GK Sbjct: 414 ---ALADLTGRDVQDDVVDAVFRNFCVGK 439 >gi|322421976|ref|YP_004201199.1| tRNA modification GTPase TrmE [Geobacter sp. M18] gi|320128363|gb|ADW15923.1| tRNA modification GTPase TrmE [Geobacter sp. M18] Length = 455 Score = 219 bits (558), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 156/455 (34%), Positives = 240/455 (52%), Gaps = 22/455 (4%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DGR 59 ++TI A+ST I I+R+SGP+ + + I K K K S R+ +G G Sbjct: 4 RDTIAAISTPLGEGGIGIVRISGPASLPIAQIIFKAKSNGGLK-SHRFSYGAVVSPDSGD 62 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 ++D+ + + P S+T ED E HGG VV+ IL L RLA+PGEF++RAF Sbjct: 63 LVDEAMAVYMKGPNSYTREDVVEIQCHGGTLVVSRILS-LVLTEGARLADPGEFTKRAFL 121 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NG+IDL++AE++ D+ISS T+ L+ G LS D + + +++EA +DF Sbjct: 122 NGRIDLVQAEAVMDVISSRTDASLALAQHQREGLLSKRIAAVKDGIVYALAYVEALIDFP 181 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 E+ DV +VL + ++ + I G ++R G +VI G N GKSSL N L Sbjct: 182 ED-DVDVAVETDVLGKVAPALAELDALIEGFDEGRVLREGVSVVIAGKPNVGKSSLLNTL 240 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 K+ AIVT +PGTTRD++ +++ G VK+ DTAGIRE++D VE+EG++ + + A Sbjct: 241 LKEKRAIVTSVPGTTRDLIEEVVNINGLPVKLLDTAGIRESEDQVEQEGVRLSLDRIPKA 300 Query: 300 DLILLLKEINS---KKEISFPKNI---DFIFIGTKSDLYSTYTEEYDH-----LISSFTG 348 DL+L + + +S +++ S I I + KSDL D IS+ TG Sbjct: 301 DLVLFVVDGSSPFGEEDASILLAIGSKSCIVVRNKSDLPVAAALPGDCSAPVVAISTLTG 360 Query: 349 EGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDII 405 G+ EL + I + + F S RH L + L+ N E ++++ Sbjct: 361 AGVPELRDAITNAFMHGHAIDGREFVAVSKARHRDALLKARISLQAFVGNLEAGVNMELL 420 Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +LR A ++G++TG + +LD IFS FCIGK Sbjct: 421 PVDLRDALDAVGEVTGETTADDVLDRIFSSFCIGK 455 >gi|257871382|ref|ZP_05651035.1| tRNA modification GTPase mnmE [Enterococcus gallinarum EG2] gi|257805546|gb|EEV34368.1| tRNA modification GTPase mnmE [Enterococcus gallinarum EG2] Length = 465 Score = 219 bits (557), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 157/464 (33%), Positives = 249/464 (53%), Gaps = 26/464 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFI---CKKKKPFPRKASLRYFFGLD 57 + E +TI A+ST AISI+RLSG + + + KKK ++ Y D Sbjct: 4 ITQEFDTIAAISTPPGEGAISIVRLSGEQAISIADAVFQSGKKKLIDVSSHTIHYGHIFD 63 Query: 58 G---RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114 +++D+ ++ + P++FT ED E + HGGI VVN IL+ L RLA PGEF+ Sbjct: 64 PEKYQMMDEVMVSIMRKPKTFTREDIVEINCHGGIVVVNQILQ-LVLRQGARLAEPGEFT 122 Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174 +RAF NG++DL +AE++ DLI ++T+ L++ + G LS L Q ++ + +E Sbjct: 123 KRAFLNGRVDLSQAEAVMDLIRAKTDKAMNLAINQLDGNLSRLIRQLRQEILETLAQVEV 182 Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234 ++D+ E +DV+ +++ +L ++ I + + + G+I+R G I+G N GKSS Sbjct: 183 NIDYPEYDDVEELTTRLLLEKANQVQKQIQALLQTAQQGKILREGLSTAIIGRPNVGKSS 242 Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294 L N L +++ AIVTDI GTTRDV+ +++ G +K+ DTAGIRET+DIVEK G++R+ Sbjct: 243 LLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLVDTAGIRETEDIVEKIGVERSRK 302 Query: 295 EVENADLILLLKE------INSKKEISFPKNIDFIFIGTKSDLYS--------TYTEEYD 340 + ADLILL+ K+ + I + K+DL S Y E Sbjct: 303 ALSEADLILLVLNQSESLTTEDKQLLDITSGNKRIILLNKTDLPSRINQEDLVPYLENEP 362 Query: 341 HL-ISSFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLN 396 L IS T EGL++L I + N K S S+ RH+ L + L E+ Sbjct: 363 ALPISVLTSEGLDQLEQAIADLFFGGNTGDK-DASYLSNTRHIALLEKAEHSLAEVIQGI 421 Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E +D++ ++ LG+I G ++L+ +FS+FC+GK Sbjct: 422 ESGMPVDLVQIDMTRCWDYLGEIVGDSVQDELITQLFSQFCLGK 465 >gi|302380979|ref|ZP_07269440.1| tRNA modification GTPase TrmE [Finegoldia magna ACS-171-V-Col3] gi|303234699|ref|ZP_07321327.1| tRNA modification GTPase TrmE [Finegoldia magna BVS033A4] gi|302311200|gb|EFK93220.1| tRNA modification GTPase TrmE [Finegoldia magna ACS-171-V-Col3] gi|302494182|gb|EFL53960.1| tRNA modification GTPase TrmE [Finegoldia magna BVS033A4] Length = 452 Score = 219 bits (557), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 154/454 (33%), Positives = 259/454 (57%), Gaps = 23/454 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRILD 62 + I A+S+ + I I+R++G C V + + K+ + + +G D I+D Sbjct: 3 DCIAAISSATGEAGIGIVRMTGEGCADVLDSVFKRANDNADFINRKMTYGHIVDDNEIVD 62 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 + L+ +P ++T ED E + HGG+ V +LE L RLA GEF++RAF NG+ Sbjct: 63 EVLVCYMKAPHTYTREDVVEIYTHGGVVAVRKVLEVLLN-NGARLAEAGEFTKRAFLNGR 121 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 IDL +AE++ D+I ++T+ +SM+ + G ++ Q DKL + S +E ++F+E Sbjct: 122 IDLSQAEAIIDMIKAKTDKAYSVSMKQLEGSVNRNIKQLRDKLLDMLSHVEYSINFTE-- 179 Query: 183 DVQN-FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 D+Q+ + VLN+ + + + G IIR+G I+G N GKSSL NAL K Sbjct: 180 DMQDELDNTPVLNEGKEVLDKLKKLSESANRGRIIRDGINTTIIGKPNVGKSSLLNALLK 239 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 ++ AIVTDIPGTTRDV+ +DL+G +KI+DTAGIR+T+DIVEK G++++ + ++DL Sbjct: 240 ENRAIVTDIPGTTRDVIEEYIDLDGISLKINDTAGIRDTEDIVEKIGVEKSVSFISDSDL 299 Query: 302 ILLL----KEIN--SKKEISFPKNIDFIFIGTKSDLYSTYT-----EEYDHLISSF-TGE 349 I+ + +E + +K + ++ I + K DL + E + + +S E Sbjct: 300 IIAIFDSSREFDDEDRKILDLIRDKKSIVLLNKIDLDGEFDVDENLEGIEVIHTSIKNNE 359 Query: 350 GLEELINKIKSILSNKFKKLPF-SIPSHKRHLYHLSQTVRYLEMASLNEKDCG--LDIIA 406 G+E+L NKI + ++ + + +I ++ RH +++ ++ LE +SL++ + G +D Sbjct: 360 GIEDLENKIIEMFNDGYIEANNDNIITNIRHRDIINKAIKSLE-SSLHDMEAGVPIDCFE 418 Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +LR A LG+ITG + +L+ IFS FCIGK Sbjct: 419 VDLRNAWEILGEITGETVDDDVLNKIFSDFCIGK 452 >gi|313890071|ref|ZP_07823706.1| tRNA modification GTPase TrmE [Streptococcus pseudoporcinus SPIN 20026] gi|313121432|gb|EFR44536.1| tRNA modification GTPase TrmE [Streptococcus pseudoporcinus SPIN 20026] Length = 458 Score = 219 bits (557), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 149/464 (32%), Positives = 256/464 (55%), Gaps = 32/464 (6%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---- 56 + E +TI A+ST AI I+RLSG ++ + K K AS +G Sbjct: 3 ITKEFDTITAISTPLGEGAIGIVRLSGTDALKIANTVFKGKN-LHEVASHTINYGHIINP 61 Query: 57 -DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 + ILD+ ++ V +P++FT E+ E + HGGIAV N IL+ L K R+A PGEF++ Sbjct: 62 DNQEILDEVMVTVMLAPKTFTRENVIEINTHGGIAVTNEILQLLIKQ-GARMAEPGEFTK 120 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG++DL +AE++ D+I ++T+ ++++ + G LS L ++ + + +E + Sbjct: 121 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSQLINNTRQEILNTLAQVEVN 180 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +D+ E +DV+ ++ + + + + + K G+I+R G I+G N GKSSL Sbjct: 181 IDYPEYDDVEEMTTALLREKTQQFQALLENLLRTAKRGKILREGLSTAIIGRPNVGKSSL 240 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N L ++D AIVTDI GTTRDV+ ++++G +K+ DTAGIRETDD+VEK G++R+ Sbjct: 241 LNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEKIGVERSKKV 300 Query: 296 VENADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTYTEEYDHLISSFT 347 ++ ADL+LL+ +N+ + ++ + + + + K+DL E D L S Sbjct: 301 LKEADLVLLV--LNASEPLTTQDRLLLELSQETNRLILLNKTDLPEKI--ETDQLPSDLV 356 Query: 348 GEGLEELINKIKSILSNKFKKLPF----------SIPSHKRHLYHLSQTVRYLEMASLN- 396 + L NK ++ ++ +L F + S+ RH+ + Q ++ L+ + Sbjct: 357 --PISVLQNKNIDMIEDRINQLFFDNAGLVEQDATYLSNARHISLIEQALQSLQAVNDGL 414 Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E D +D++ +L LG+ITG ++L+ +FS+FC+GK Sbjct: 415 EMDMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 458 >gi|302510559|ref|XP_003017231.1| hypothetical protein ARB_04108 [Arthroderma benhamiae CBS 112371] gi|291180802|gb|EFE36586.1| hypothetical protein ARB_04108 [Arthroderma benhamiae CBS 112371] Length = 578 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 127/326 (38%), Positives = 188/326 (57%), Gaps = 35/326 (10%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLDGR 59 ++ + TI+A+ST +AI+IIR+SGP C + +C +K P PR A+LR + Sbjct: 24 LDEKPTTIYALSTAPGRAAIAIIRISGPDCIPIYNALCPNRKLPKPRFAALRTIYEPGKP 83 Query: 60 I-----LDKGLLIV-FPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP--------NL 105 + LD G L+ FP+P + TGED E HVHGG AV+ IL + K ++ Sbjct: 84 VSADNALDSGALVFHFPAPNTVTGEDVLELHVHGGPAVIKSILSAIPKCATPGDAPSASI 143 Query: 106 RLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKL 165 R A PGEF+RRAF N ++DL + E+L + ++++TE QRRL++ G + LS+ Y QW +L Sbjct: 144 RYAEPGEFTRRAFLNDRLDLPQIEALGNTLAADTEQQRRLAIRGTNDTLSTRYEQWRKQL 203 Query: 166 THIRSFIEADLDFSEE----EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK 221 + R +EA +DFSE+ E V +F S V + L + I+ HI GE++R+G K Sbjct: 204 LYARGELEALIDFSEDQHFDESVDDFISS-VTGQVDSLLHQINLHIENASKGELLRSGIK 262 Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--- 278 + +LG NAGKSSL N + +D AIV+ GTTRD++ + +DL G+L K D AG+R Sbjct: 263 VALLGAPNAGKSSLLNQIVGRDAAIVSSEEGTTRDIVDVGIDLGGWLCKFGDMAGLRSKL 322 Query: 279 ------------ETDDIVEKEGIKRT 292 T +E+EGI+R Sbjct: 323 SQSQIAAQGHVVSTVGKIEEEGIRRA 348 >gi|257888103|ref|ZP_05667756.1| tRNA modification GTPase mnmE [Enterococcus faecium 1,141,733] gi|257896278|ref|ZP_05675931.1| tRNA modification GTPase mnmE [Enterococcus faecium Com12] gi|293379359|ref|ZP_06625503.1| tRNA modification GTPase TrmE [Enterococcus faecium PC4.1] gi|257824157|gb|EEV51089.1| tRNA modification GTPase mnmE [Enterococcus faecium 1,141,733] gi|257832843|gb|EEV59264.1| tRNA modification GTPase mnmE [Enterococcus faecium Com12] gi|292641882|gb|EFF60048.1| tRNA modification GTPase TrmE [Enterococcus faecium PC4.1] Length = 465 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 156/469 (33%), Positives = 266/469 (56%), Gaps = 42/469 (8%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC----KKKKPFPRKASLRYFFGLDGR 59 E +TI A+ST AISI+RLSG Q+ + + K+ P ++ Y +D + Sbjct: 7 EFDTIAAISTPPGEGAISIVRLSGDQAVQLADKVYHSGNKRLSEVPSH-TIHYGHIVDPK 65 Query: 60 ---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 ++D+ ++ V +P++FT ED E + HGGI VVN IL+ L + RLA PGEF++R Sbjct: 66 SDQLVDEVMVSVMRAPKTFTREDVVEINCHGGIVVVNQILQLLLR-EGARLAEPGEFTKR 124 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NG++DL +AE++ DLI ++T+ L++ + G LS+L ++ + +E ++ Sbjct: 125 AFLNGRVDLSQAEAVMDLIRAKTDKAMGLALNQLDGNLSALIRSLRQEILETLAQVEVNI 184 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D+ E +DV+ ++K +L ++ I + ++ K G+++R G I+G N GKSSL Sbjct: 185 DYPEYDDVEELTTKLLLEKAQMIQQRIQALLATSKQGKVLREGLSTAIIGRPNVGKSSLL 244 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N L +++ AIVTDI GTTRDV+ +++ G +K+ DTAGIRET+D+VE+ G++R+ + Sbjct: 245 NHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSRKAL 304 Query: 297 ENADLILLL----KEINSKKE--ISFPKNIDFIFIGTKSDLYSTYTEE-YDHL------- 342 ADLILL+ + + ++ E + K + I + K+DL + +E + L Sbjct: 305 AEADLILLVLNQSEPLTAEDEQLLEATKGLKRIILLNKTDLPAQLEQEKLNKLIENEPVF 364 Query: 343 -ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT--VRYLEMASLNEK- 398 IS +GL+ L +S +S+ F FS + +R ++S T + LE ASL+ + Sbjct: 365 SISVAKNDGLDHL----ESAISDLF----FSGETGERDATYVSNTRHIALLEKASLSLEE 416 Query: 399 -----DCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D G+ D++ ++ LG++ G ++L+ +FS+FC+GK Sbjct: 417 VIAGIDAGMPVDLVQIDMTRCWDYLGEVVGDSVQDELITQLFSQFCLGK 465 >gi|325265449|ref|ZP_08132172.1| tRNA modification GTPase TrmE [Clostridium sp. D5] gi|324029307|gb|EGB90599.1| tRNA modification GTPase TrmE [Clostridium sp. D5] Length = 470 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 164/473 (34%), Positives = 247/473 (52%), Gaps = 42/473 (8%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF--PRKASLRYFFGLDG-RIL 61 K+TI A+STG S I I+R+SG FQV + I K + ++ Y F DG + Sbjct: 3 KDTIAAISTGMSNSGIGIVRISGAEAFQVIDRIYTGKDRLLEAKSHTIHYGFIKDGGETV 62 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121 D+ L+++ P +FTGED+ E + HGG VV +LE + K R A PGEF++RAF NG Sbjct: 63 DEVLVMLMRGPRTFTGEDTVEINCHGGTYVVKRVLETVIK-NGARPAEPGEFTKRAFLNG 121 Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181 K+DL +AE++ +I+S+ E + S+ + G + +K+ + +FIE LD E Sbjct: 122 KMDLSQAEAVIGVITSKNEYALQCSISQLKGSVKKKIEDIRNKIVYHTAFIETALDDPEH 181 Query: 182 EDVQNFSS--KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 ++ + K V++DIL +I I G I++ G + VI G NAGKSSL N L Sbjct: 182 IEIDGYGETLKSVIDDILV---EIGKLIESSDSGRIMKEGIQTVIAGKPNAGKSSLLNVL 238 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 A ++ AIVTDI GTTRD L + L G + + DTAGIRETDDI+EK G+ + V+NA Sbjct: 239 AGRERAIVTDIEGTTRDALEEQIQLNGLTLNMVDTAGIRETDDIIEKMGVDKARDYVKNA 298 Query: 300 DLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEE-----YDHLISSFTG 348 DLI+ + + N + I I + KSDL + T+E ++++ Sbjct: 299 DLIIYVADASRPLDKNDEDIIRLTAGKKCIILLNKSDLETVITKEILQNKIKNILNETEN 358 Query: 349 EGL--------------EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA- 393 EG+ E+ + + + IL+ F K S + + ++ ++ Q + Sbjct: 359 EGINSIYIPMIDISAKEEQGLQEFEDILNTMFLKGEVSF-NDEVYITNIRQKAALRDACE 417 Query: 394 SLN------EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 SLN + D + +L A SLG ITG E L++ IFSKFC+GK Sbjct: 418 SLNKVIESIDNQMPEDFFSIDLMDAYESLGSITGETIGEDLVNEIFSKFCMGK 470 >gi|307709441|ref|ZP_07645898.1| tRNA modification GTPase TrmE [Streptococcus mitis SK564] gi|307619755|gb|EFN98874.1| tRNA modification GTPase TrmE [Streptococcus mitis SK564] Length = 457 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 150/461 (32%), Positives = 263/461 (57%), Gaps = 26/461 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKAS--LRYFFGLD- 57 + E +TI A+ST AI I+RLSG F + + I + K + AS L Y +D Sbjct: 2 ITREFDTIAAISTPLGEGAIGIVRLSGTESFAIAQKIFEGKD-LNQVASHTLNYGHIVDP 60 Query: 58 --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 G+++D+ ++ SP++FT ED E + HGGIAV N IL+ LA RLA PGEF++ Sbjct: 61 QTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 119 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG++DL +AE++ D+I ++T+ +++++ + G LS L ++ + + +E + Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMKIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 179 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +D+ E +DV+ ++ V + + +++ + + G+I+R G I+G N GKSSL Sbjct: 180 IDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPNVGKSSL 239 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N L ++D AIVTDI GTTRDV+ +++ G +K+ DTAGIRETDDIVE+ G++R+ Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGIPLKLIDTAGIRETDDIVEQIGVERSKKA 299 Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDL-----YSTYTEEYDHLIS 344 ++ ADL+LL+ + ++ + + + I + K+DL S E+ IS Sbjct: 300 LKEADLVLLVLNASEPLTAQDRQLLEISQETNRIILLNKTDLPEAIETSKLPEDVIR-IS 358 Query: 345 SFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCG 401 + ++++ +I ++ + + + S+ RH+ + + V L+ ++NE + G Sbjct: 359 VLKNQNIDKIEERINNLFFENAGLVEQDATYLSNARHISLIEKAVESLQ--AVNEGLELG 416 Query: 402 L--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + D++ +L LG+ITG ++L+ +FS+FC+GK Sbjct: 417 MPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457 >gi|322374354|ref|ZP_08048868.1| tRNA modification GTPase TrmE [Streptococcus sp. C300] gi|321279854|gb|EFX56893.1| tRNA modification GTPase TrmE [Streptococcus sp. C300] Length = 457 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 148/458 (32%), Positives = 257/458 (56%), Gaps = 20/458 (4%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKAS--LRYFFGLD- 57 + E +TI A+ST AI I+RLSG F + + I K K + AS L Y +D Sbjct: 2 ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKD-LSKVASHTLNYGHIIDP 60 Query: 58 --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 G+++D+ ++ SP++FT ED E + HGGIAV N IL+ LA RLA PGEF++ Sbjct: 61 QTGKVMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 119 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG++DL +AE++ D+I ++T+ ++++ + G LS L ++ + + +E + Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 179 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +D+ E +DV+ ++ V + + +++ + + G+I+R G I+G N GKSSL Sbjct: 180 IDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPNVGKSSL 239 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N L ++D AIVTDI GTTRDV+ +++ G +K+ DTAGIR+TDDIVE+ G++R+ Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRDTDDIVEQIGVERSRKA 299 Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDL-YSTYTEEYDH---LISS 345 ++ ADL+LL+ + ++ + + + I + K+DL + T E IS Sbjct: 300 LKEADLVLLVLNASEPLTAQDRQLLEISQVTNRIILLNKTDLPEAIETSELPEDIIRISV 359 Query: 346 FTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGL 402 + ++++ +I + + + + S+ RH+ + + V L+ + E + Sbjct: 360 LKNQNIDKIEERINDLFFENAGLVEQDATYLSNARHISLIEKAVESLQAVNQGLELGMPV 419 Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D++ +L LG+ITG ++L+ +FS+FC+GK Sbjct: 420 DLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457 >gi|313887368|ref|ZP_07821058.1| tRNA modification GTPase TrmE [Porphyromonas asaccharolytica PR426713P-I] gi|312923136|gb|EFR33955.1| tRNA modification GTPase TrmE [Porphyromonas asaccharolytica PR426713P-I] Length = 470 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 157/481 (32%), Positives = 256/481 (53%), Gaps = 52/481 (10%) Query: 1 MNHE-KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR 59 M H+ ETI A +T AL +++IR+SG Q+ E + K+ PR+A+ +DG+ Sbjct: 1 MIHDLSETICAPAT-ALGGGLAVIRISGSLAPQIAERLLGKRLA-PREAT-TAGLRIDGQ 57 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 ++D + F +P S+TGE+ E H +V ILE +A+ R+A+PGEF+RRA Sbjct: 58 LIDLVVATYFAAPHSYTGEEVVELSCHASPYIVRSILEWIAQQEGCRMADPGEFTRRALA 117 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 +GK+DL EAE++ADLI++ T Q +++ME +G LS L + L +E +LDFS Sbjct: 118 HGKLDLAEAEAVADLIAATTATQHKMAMEQHTGRLSHLLNELRATLLRFAGLLELELDFS 177 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 EEDV ++ + +++ + G+ ++ G I+G N GKSSL NAL Sbjct: 178 -EEDVAFADRSTLVETLATIQHQLRLLTQSFSTGQELQQGIPTAIIGAPNVGKSSLLNAL 236 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 + + AIV+DIPGTTRD + L + G L ++ DTAG+R+T D+VE+ GI+R++ ++ +A Sbjct: 237 LQHERAIVSDIPGTTRDTVEGRLTIRGTLFRLIDTAGLRQTTDLVEQLGIERSYQQISSA 296 Query: 300 DLILLL------------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL----- 342 LIL + +++ ++ P + I + K DL T E D L Sbjct: 297 RLILWVIAPPLPTWDELEAQLSEILRLTSPDSTLIILLN-KRDLL-TEREVTDWLSNCSS 354 Query: 343 ----------------ISSFTGEGLEEL----INKIKSILSNKFKKLPFSIPSHKRHLYH 382 IS+ +G+E L ++ +++ S++ + +++ RH Sbjct: 355 LLQRTNGKPHTTSPLAISARAAQGIEALEELMVSSTQTLHSDEETVMLYNL----RHYEA 410 Query: 383 LSQTVRYLEMASLNEKDCGL--DIIAENLRLASVSLGKITGC-VDVEQLLDIIFSKFCIG 439 L++ R LE+ S + GL D+I LR A +G +TG + +++L IFS FCIG Sbjct: 411 LTKASRALELVSEGLHN-GLTSDLITPYLREAIEEIGLVTGASITSDEVLGFIFSHFCIG 469 Query: 440 K 440 K Sbjct: 470 K 470 >gi|289579530|ref|YP_003478157.1| tRNA modification GTPase TrmE [Thermoanaerobacter italicus Ab9] gi|289529243|gb|ADD03595.1| tRNA modification GTPase TrmE [Thermoanaerobacter italicus Ab9] Length = 460 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 167/467 (35%), Positives = 251/467 (53%), Gaps = 42/467 (8%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRK-------ASLRYFFGLD- 57 +TI A+ST + I I+R+SG E I K KP+ K +L Y +D Sbjct: 4 DTIAAISTFPGEAGIGIVRISGDDAL---EIISKIFKPYKAKDIKKVKSHTLHYGHIVDP 60 Query: 58 --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 I D+ L+ + P ++T ED E + HGGI + + ILE + K RLA PGEF++ Sbjct: 61 ETQEIYDEVLVSIMKKPNTYTREDIVEINCHGGIVITSKILELVLKQ-GARLAEPGEFTK 119 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG+IDL +AE++ D+I+++T + + + + ++G + S + DK+ + + A Sbjct: 120 RAFLNGRIDLSQAEAVIDIITAKTMLANKYAQKQLAGYVGSRIKEMKDKIMGLLVHLLAL 179 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +DF EE DV+ KE+L + DI I + G IIR G K I+G N GKSSL Sbjct: 180 IDFPEE-DVEELERKEMLETAKEIVEDIDKLIVSSESGRIIREGLKTAIIGKPNVGKSSL 238 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 NAL K++ AIVTDIPGTTRD++ ++++G +K+ DTAGIR+TD++VEK G++R+ Sbjct: 239 LNALLKENRAIVTDIPGTTRDIIEEYINVKGIPIKLIDTAGIRDTDELVEKIGVERSKEV 298 Query: 296 VENADLILLLKEINSKKEIS----------FPKNIDFIFIGTKSDLYSTYTEE------Y 339 + ADLIL + +++ +E+S KNI IF+ K DL E Sbjct: 299 LAEADLILFV--LDASRELSEEDYQIFDILTEKNI--IFVLNKIDLPKKIDESKLKSLIK 354 Query: 340 DHLI---SSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL 395 D +I S+ GLE+L N I + I + RH L +Y+E + + Sbjct: 355 DGIIIEVSTVERIGLEKLENAIYDLVFRGDINLREEEIIINSRHKEALINAKKYME-SCV 413 Query: 396 NEKDCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + G D+I +L A LGKITG E L++ IF +FC+GK Sbjct: 414 KAIEMGYSEDLITIDLNAALDQLGKITGETATEDLINEIFERFCVGK 460 >gi|49487489|ref|YP_044710.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus MSSA476] gi|73919890|sp|Q6G5W4|MNME_STAAS RecName: Full=tRNA modification GTPase mnmE gi|49245932|emb|CAG44413.1| probable tRNA modification GTPase [Staphylococcus aureus subsp. aureus MSSA476] Length = 459 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 152/462 (32%), Positives = 252/462 (54%), Gaps = 33/462 (7%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD--- 62 +TI ++ST AI I+RLSGP ++ + + K K S +G I+D Sbjct: 4 DTITSISTPMGEGAIGIVRLSGPQAVEIADKLYKGKHLLNDVPSHTINYG---HIIDPES 60 Query: 63 -----KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 + ++ V +P++FT ED E + HGGI +N +LE L R+A PGEF++RA Sbjct: 61 KEVVEEVMVSVLRAPKTFTREDIIEINCHGGILTINRVLE-LTMTYGARMAEPGEFTKRA 119 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NG+IDL +AE++ D I S+T+ +++M + G LS L + + I + +E ++D Sbjct: 120 FLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEILAQVEVNID 179 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 + E +DV++ +++ +L +K +I+ + G G+I+R G VI+G N GKSS+ N Sbjct: 180 YPEYDDVEDATTEFLLEQSKEIKQEINRLLDTGAQGKIMREGLSTVIVGKPNVGKSSMLN 239 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 L + + AIVT++ GTTRDVL +++ G +++ DTAGIRET+DIVEK G++R+ + Sbjct: 240 NLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRETEDIVEKIGVERSRKALS 299 Query: 298 NADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTY-TEEYDHLI----- 343 ADLIL + +N+ + ++ KN D I I K DL E +I Sbjct: 300 QADLILFV--LNNNEALTQEDYTLYEVVKNEDVIVIVNKMDLEQNIDINEVKDMIGDTPL 357 Query: 344 ---SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEK 398 S EG++EL +I+ + + + + S+ RH+ L Q + ++ A E Sbjct: 358 IQTSMLKQEGIDELEIQIRDLFFGGEVQNQDMTYVSNSRHISLLKQARQTIQDAIDAAES 417 Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+I G ++L+D +FS+FC+GK Sbjct: 418 GVPMDMVQIDLTRIWEILGEIIGETASDELIDQLFSQFCLGK 459 >gi|297545652|ref|YP_003677954.1| tRNA modification GTPase TrmE [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296843427|gb|ADH61943.1| tRNA modification GTPase TrmE [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 462 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 167/467 (35%), Positives = 251/467 (53%), Gaps = 42/467 (8%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRK-------ASLRYFFGLD- 57 +TI A+ST + I I+R+SG E I K KP+ K +L Y +D Sbjct: 6 DTIAAISTFPGEAGIGIVRISGDDAL---EIISKIFKPYKAKDIKKVKSHTLHYGHIVDP 62 Query: 58 --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 I D+ L+ + P ++T ED E + HGGI + + ILE + K RLA PGEF++ Sbjct: 63 ETQEIYDEVLVSIMKKPNTYTREDIVEINCHGGIVITSKILELVLKQ-GARLAEPGEFTK 121 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG+IDL +AE++ D+I+++T + + + + ++G + S + DK+ + + A Sbjct: 122 RAFLNGRIDLSQAEAVIDIITAKTMLANKYAQKQLAGYVGSRIKEMKDKIMGLLVHLLAL 181 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +DF EE DV+ KE+L + DI I + G IIR G K I+G N GKSSL Sbjct: 182 IDFPEE-DVEELERKEMLETAKEIVEDIDKLIVSSESGRIIREGLKTAIIGKPNVGKSSL 240 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 NAL K++ AIVTDIPGTTRD++ ++++G +K+ DTAGIR+TD++VEK G++R+ Sbjct: 241 LNALLKENRAIVTDIPGTTRDIIEEYINVKGIPIKLIDTAGIRDTDELVEKIGVERSKEV 300 Query: 296 VENADLILLLKEINSKKEIS----------FPKNIDFIFIGTKSDLYSTYTEE------Y 339 + ADLIL + +++ +E+S KNI IF+ K DL E Sbjct: 301 LAEADLILFV--LDASRELSEEDYQIFDILTEKNI--IFVLNKIDLPKKIDESKLKSLIK 356 Query: 340 DHLI---SSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL 395 D +I S+ GLE+L N I + I + RH L +Y+E + + Sbjct: 357 DGIIIEVSTVERIGLEKLENAIYDLVFRGDINLREEEIIINSRHKEALINAKKYME-SCV 415 Query: 396 NEKDCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + G D+I +L A LGKITG E L++ IF +FC+GK Sbjct: 416 KAIEMGYSEDLITIDLNAALDQLGKITGETATEDLINEIFERFCVGK 462 >gi|169825321|ref|YP_001692932.1| tRNA modification GTPase [Finegoldia magna ATCC 29328] gi|205829141|sp|B0S3V2|MNME_FINM2 RecName: Full=tRNA modification GTPase mnmE gi|167832126|dbj|BAG09042.1| tRNA modification GTPase [Finegoldia magna ATCC 29328] Length = 452 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 154/454 (33%), Positives = 259/454 (57%), Gaps = 23/454 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRILD 62 + I A+S+ + I I+R++G C V + + K+ + + +G D I+D Sbjct: 3 DCIAAISSATGEAGIGIVRMTGEGCADVLDSVFKRANDKADFINRKMTYGHIVDDNEIVD 62 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 + L+ +P ++T ED E + HGG+ V +LE L RLA GEF++RAF NG+ Sbjct: 63 EVLVCYMKAPHTYTREDVVEIYTHGGVVAVRKVLEVLLN-NGARLAEAGEFTKRAFLNGR 121 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 IDL +AE++ D+I ++T+ +SM+ + G ++ Q DKL + S +E ++F+E Sbjct: 122 IDLSQAEAIIDMIKAKTDKAYSVSMKQLEGSVNRNIKQLRDKLLDMLSHVEYSINFTE-- 179 Query: 183 DVQN-FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 D+Q+ + VLN+ + + + G IIR+G I+G N GKSSL NAL K Sbjct: 180 DMQDELDNTPVLNEGKEVLDKLKKLSESANRGRIIRDGINTTIIGKPNVGKSSLLNALLK 239 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 ++ AIVTDIPGTTRDV+ +DL+G +KI+DTAGIR+T+DIVEK G++++ + ++DL Sbjct: 240 ENRAIVTDIPGTTRDVIEEYIDLDGISLKINDTAGIRDTEDIVEKIGVEKSVSFISDSDL 299 Query: 302 ILLL----KEIN--SKKEISFPKNIDFIFIGTKSDLYSTYT-----EEYDHLISSF-TGE 349 I+ + +E + +K + ++ I + K DL + E + + +S E Sbjct: 300 IIAIFDSSREFDDEDRKILDLIRDKKSIVLLNKIDLDGEFDVDENLEGIEVIHTSIKNNE 359 Query: 350 GLEELINKIKSILSNKFKKLPF-SIPSHKRHLYHLSQTVRYLEMASLNEKDCG--LDIIA 406 G+E+L NKI + ++ + + +I ++ RH +++ ++ LE +SL++ + G +D Sbjct: 360 GIEDLENKIIEMFNDGYIEANNDNIITNIRHRDIINKAIKSLE-SSLHDMEAGVPIDCFE 418 Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +LR A LG+ITG + +L+ IFS FCIGK Sbjct: 419 VDLRNAWEILGEITGETVDDDVLNKIFSDFCIGK 452 >gi|288573317|ref|ZP_06391674.1| tRNA modification GTPase TrmE [Dethiosulfovibrio peptidovorans DSM 11002] gi|288569058|gb|EFC90615.1| tRNA modification GTPase TrmE [Dethiosulfovibrio peptidovorans DSM 11002] Length = 456 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 152/462 (32%), Positives = 243/462 (52%), Gaps = 36/462 (7%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG---LD--GRI 60 +TI A+ST + ISIIR+SGP F + + + P P K R + LD G Sbjct: 4 DTIAAISTAWGDAGISIIRMSGPDAFDFAKSLVRTFTP-PEKMKYRIMYNGSLLDESGGP 62 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+ LL++F +P+S+TGED AE H HGG V LE + R A+PGEF+RRA+EN Sbjct: 63 IDQVLLVLFQAPKSYTGEDLAEIHCHGGSLVAQRCLERCLQK-GCRHADPGEFTRRAYEN 121 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G++DL +AE++ +I + + R + + GELS + D+L + + +E +DF E Sbjct: 122 GRLDLSQAEAVNGIIHARSNEALRAANRTLQGELSRFVREIYDELLGLSAELEVGIDFPE 181 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E DV ++V + + L D+ + + G ++R G ++ ++G N GKSSL NAL Sbjct: 182 E-DVPYIEDQDVSDRMETLIQDLGDLLDRCTTGYLLREGIRVALVGRPNVGKSSLLNALL 240 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET-DDIVEKEGIKRTFLEVENA 299 ++ AIVT IPGTTRDV+ +G +++ DTAG+RET D VE GI+RT ++ + Sbjct: 241 RESRAIVTSIPGTTRDVIEEVFTHKGIPLRLMDTAGLRETPSDEVEAMGIERTAKAIDES 300 Query: 300 DLIL---------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLIS 344 D++L L ++++ K I D ++D+ E + IS Sbjct: 301 DVVLWILDGSEPLEIPDRPLTEKLSGKPHIVALNKSDLPKAFDETDIAKLLPESWVIRIS 360 Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLD- 403 + GL+EL I ++S L + + R + + + + SL + LD Sbjct: 361 AQEKRGLDELKEAIVDLVSGT-GTLDAGLNATARQVEEIREAIE-----SLTDGKGALDS 414 Query: 404 -----IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + A ++R A +L ++ G D E LLD++FS+FC+GK Sbjct: 415 YSDQTLAASSIREARSALERLLGLQDDEALLDLVFSRFCVGK 456 >gi|156048568|ref|XP_001590251.1| hypothetical protein SS1G_09015 [Sclerotinia sclerotiorum 1980] gi|154693412|gb|EDN93150.1| hypothetical protein SS1G_09015 [Sclerotinia sclerotiorum 1980 UF-70] Length = 502 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 152/488 (31%), Positives = 242/488 (49%), Gaps = 86/488 (17%) Query: 33 VCEFICKKKK-PFPRKASLRYFF---GLDGRILDK-GLLIVFPSPESFTGEDSAEFHVHG 87 + + +C K P PR A++R + ILD L++ FP+P++ TGED E HVHG Sbjct: 21 IYQSLCPSKPIPKPRYAAVRTLYEPLAPTRNILDSDALVLYFPAPKTVTGEDVLELHVHG 80 Query: 88 GIAVVNGILEELAKMPN---LRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRR 144 G A V +L + + + +R A PGEF+RRAF+N ++DL + E+L+D +S+ETE QRR Sbjct: 81 GSATVKAVLSAIPQCTSPAKIRYAEPGEFTRRAFQNNRLDLAQVEALSDTLSAETEQQRR 140 Query: 145 LSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN---DILFLKN 201 ++ G SG L Y W +L + R +EA +DFSE++ ++ + N + + Sbjct: 141 AAVRGTSGNLGRTYEAWRQQLLYARGELEALIDFSEDQHFDESPAELLWNVTAQVEVMLE 200 Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261 I++H S GE+++ G +I +LG NAGKSSL N + ++ +IV+ GTTRD++ + Sbjct: 201 SIAAHESASHRGELLKKGIRISLLGPPNAGKSSLLNQIVGREASIVSQEAGTTRDIVEVS 260 Query: 262 LDLEGYLVKISDTAGIR---------ETDDI---VEKEGIKRTFLEVENADLILLL---- 305 LD+ GYL +DTAG+R + D I +E+EGI+R + +D+++ L Sbjct: 261 LDIRGYLCTFADTAGLRTQVSPSESGKNDSIIGHIEQEGIRRAKAKANESDVVIALASIE 320 Query: 306 -KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKS---- 360 +I + EI + +I+ I K+ + D S T E L ELIN K Sbjct: 321 WSDIRNGWEIRY--DIETFEIAAKAPKSMIAINKSD----SVTPEILSELINDFKKSQID 374 Query: 361 -ILSN---------------------------------KFKKLP------FSIPSHKRHL 380 I N LP + +R L Sbjct: 375 IITENVVPLMTISCKNAQASSSQGSIGHFIDEMVKVFENMTSLPTDLEDLLGVTERQRQL 434 Query: 381 Y-----HLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITG---CVDVEQLLDII 432 HL + ++ +E++ + + AE+LR A+ L +ITG DVE++L ++ Sbjct: 435 LAACSAHLLDFTKEAQLQVDDEREVDIVLAAEHLRSAANCLSRITGRGEAGDVEEVLGVV 494 Query: 433 FSKFCIGK 440 F KFC+GK Sbjct: 495 FEKFCVGK 502 >gi|126324169|ref|XP_001370184.1| PREDICTED: similar to mitochondrial GTP binding protein 2 [Monodelphis domestica] Length = 429 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 146/441 (33%), Positives = 217/441 (49%), Gaps = 52/441 (11%) Query: 5 KETIFAVSTGALPSAISIIRLSGP-SCFQVCEFICKKKKPFPRKASLRYF-FGLDGRILD 62 + TIFA+S+G +++IR SGP S V + P PR A LR + LD Sbjct: 36 RATIFALSSGQGKCGVAVIRTSGPASGPAVLGLAALRALPQPRLAKLRLLKHPVSSEPLD 95 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 +GL++ FP P SFTGED AEFHVHGG AVV+ +L L +P R A GEF++RAF+NGK Sbjct: 96 RGLVLWFPGPHSFTGEDCAEFHVHGGPAVVSAVLGALGGVPGCRPAEAGEFTKRAFQNGK 155 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 + L E E L DLI +ETE QRR ++ + GEL L W + LT + +EA +DFSE++ Sbjct: 156 LSLTEVEGLGDLIHAETEAQRRQALRQLQGELGQLCRAWGETLTTALAHLEAYIDFSEDD 215 Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 +++ + V + L+ + +H+ + G+ +R+G +VI G +NAGKSSL N L ++ Sbjct: 216 NIEEGVLEWVDGTVQGLREALEAHLQDARRGQRLRSGAHVVIAGPANAGKSSLINLLTRQ 275 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 +T+ +G +V D + R L + AD Sbjct: 276 P---------STKGPAQGHAASQGTVVTPGDPS------------ASPRILLVLNKAD-- 312 Query: 303 LLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362 LL + + + P ++ L+S T GLE ++ +K L Sbjct: 313 -LLPKGGAPGGATLPPHL---------------------LLSCKTEAGLEAVLAALKKEL 350 Query: 363 SNKFKKLPFSIP--SHKRHLYHLSQTVRYLE-MASLNEKDCGLDIIAENLRLASVSLGKI 419 + P + RH +HL + L +D L + AE LR A LG + Sbjct: 351 AAVCGDPTVGPPVLTRARHRHHLQSCLEALRGYGRSRARD--LALAAEELREARRQLGHL 408 Query: 420 TGCVDVEQLLDIIFSKFCIGK 440 TG +Q+L++IF FCIGK Sbjct: 409 TGQGRPDQILEVIFRDFCIGK 429 >gi|89897893|ref|YP_515003.1| tRNA modification GTPase TrmE [Chlamydophila felis Fe/C-56] gi|123483931|sp|Q256D0|MNME_CHLFF RecName: Full=tRNA modification GTPase mnmE gi|89331265|dbj|BAE80858.1| tRNA modification GTPase trmE [Chlamydophila felis Fe/C-56] Length = 443 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 165/453 (36%), Positives = 236/453 (52%), Gaps = 28/453 (6%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRI 60 + +TI A++T +I+I+R+SGP Q+ + I P P AS G GR Sbjct: 3 KNDTIAAIATPPGEGSIAIVRVSGPEAIQITDKIFSG--PVPSFASHTAHLGTASHHGRQ 60 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+ LL++ +P SFTGED E HGG + ILE L R A PGEFS+RAF N Sbjct: 61 IDQVLLLIMRAPRSFTGEDVVELQCHGGYFSCSQILEALVSE-GARPALPGEFSQRAFLN 119 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GKIDL++AE++ +LI+++ ++ G S + + +FIE DF E Sbjct: 120 GKIDLIQAEAIQNLIAADNLDAFHIAQNHFQGHFSQRVQKISSLIIESLAFIEVLADFPE 179 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE ++ LN+ L + D+ S +G+ + G IV+ GH NAGKSSL NAL Sbjct: 180 EEQPDMEVPEKRLNEALVIIEDLISSFDEGQR---LAQGTSIVLAGHPNAGKSSLLNALT 236 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDIPGTTRD+L L+G +++ D+AG RETD+ VE+EGI+R ++ A+ Sbjct: 237 NRNRAIVTDIPGTTRDILEESWTLQGKRIRLIDSAGQRETDNPVEQEGIERAISAMKQAE 296 Query: 301 LILLLKEINSK----KEISFPKNIDFIFIGTKSDLYSTY---TEEYDHLISSFTGEGLEE 353 IL + + EI F K + + KSDL S T IS+ TG+G+ E Sbjct: 297 GILWVMDATQPPPPLPEILFQK--PSLLLWNKSDLASPPRIDTSLPQLAISAKTGDGILE 354 Query: 354 LINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL-----DIIAE 407 L I K I + K RH L Q YL L+ K+ L +++A Sbjct: 355 LKQFIQKWIQKQQLGKNSKVFLVSARHHTILQQIRTYL----LSAKEGLLSQLPPELVAL 410 Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LR A + G ++G E +L IFS+FCIGK Sbjct: 411 ELRQALQTTGNLSGSEINETILGEIFSRFCIGK 443 >gi|317968166|ref|ZP_07969556.1| tRNA modification GTPase TrmE [Synechococcus sp. CB0205] Length = 449 Score = 218 bits (555), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 148/442 (33%), Positives = 245/442 (55%), Gaps = 31/442 (7%) Query: 19 AISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL-----DGRILDKGLLIVFPS 71 ++SI+R+SGP + E F ++ + S R +G G +D+ LL++ + Sbjct: 19 SVSIVRISGPEAEAIGERLFEAPGQQVWE---SHRVLYGHVRDPGSGERVDEALLLLMRA 75 Query: 72 PESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESL 131 P SFT E E H HGG+ V +LE L R A PGEFS+RAF NG++DL AE++ Sbjct: 76 PRSFTRETVVELHCHGGVISVQRVLE-LVLAAGARRALPGEFSQRAFLNGRLDLTRAEAI 134 Query: 132 ADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNF 187 ++L+++ + +L+M G+ G ++S L + +D+L + EA +DF E+D+ Sbjct: 135 SELVTARSRRAAQLAMAGLDGGLERQISGLRLRLLDQLAEL----EARVDF--EDDLPPL 188 Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247 + V +++ +++ + ++ G+ G+++R G K+ I+G N GKSSL N L++ D AIV Sbjct: 189 DGQAVASELQAVRSALQELVADGERGQVLREGLKVAIVGRPNVGKSSLLNLLSRSDRAIV 248 Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307 TD+PGTTRD++ +L L+G + + DTAGIR+T+D VE+ GI+R+ ++ AD++LLL + Sbjct: 249 TDLPGTTRDLVESELVLKGVPLTLLDTAGIRDTEDRVEQIGIERSRGALQAADVVLLLFD 308 Query: 308 I-------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEY-DHLISSFTGEGLEELINKIK 359 + S P+ I + + K+D + + D IS+ TGEG E L++++ Sbjct: 309 RAQGWLAEDQALLASLPQGIPHLVVANKADQPAAEPAAHADVCISALTGEGHEALVDRLL 368 Query: 360 SILSNKFKKLPFSIPSHKRHL-YHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGK 418 ++ + ++R L +S E+ D +LR A SLG+ Sbjct: 369 QSCGQGGEQ-GLQVALNRRQLDLAVSAAASLQRTLEAGEQQLPWDFWTIDLRAAVRSLGE 427 Query: 419 ITGCVDVEQLLDIIFSKFCIGK 440 ITG E +LD IFS+FCIGK Sbjct: 428 ITGAEVTEAVLDRIFSRFCIGK 449 >gi|328952573|ref|YP_004369907.1| tRNA modification GTPase mnmE [Desulfobacca acetoxidans DSM 11109] gi|328452897|gb|AEB08726.1| tRNA modification GTPase mnmE [Desulfobacca acetoxidans DSM 11109] Length = 456 Score = 218 bits (555), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 148/458 (32%), Positives = 240/458 (52%), Gaps = 24/458 (5%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF-PRKASLRYFFGL-----D 57 ++ TI A+ST I I+RLSGP + + I + +P P + R G D Sbjct: 2 KRHTIAAISTPPGEGGIGIVRLSGPDSRAIADRIFRPARPHTPTWPARRLILGQIVSPED 61 Query: 58 GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 G+ +D+ LL P P S+T ED E H G AV+ IL+ L RLA+PGEF+ RA Sbjct: 62 GQAVDEVLLAFMPRPHSYTREDVIEIQCHSGYAVLQRILQ-LTLQAGARLADPGEFTLRA 120 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F +G++DL +AE++ ++I + ++ R++ ++G L + D L + + +EADLD Sbjct: 121 FLSGRLDLTQAEAVLEVIQARSDASLRVAAAHLAGGLGRHLTRLRDDLLDLLALVEADLD 180 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 F EE V +++ + L+++I++ G ++R G ++V+ G N GKSSL N Sbjct: 181 FGEE--VPEIDLAALVHQLEALESEITALCQSYAQGRMLRQGLQVVLAGRPNVGKSSLLN 238 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 L + D AIVTDIPGTTRDV+ +L ++G V + DTAG+R ++VE+ GI+RT ++ Sbjct: 239 RLLQTDRAIVTDIPGTTRDVIAENLVIQGLPVCLLDTAGLRPAQNLVEEIGIQRTQEHLQ 298 Query: 298 NADLILLL------KEINSKKEISFPKNIDFIFIGTKSDL-----YSTYTEEYDHL---I 343 ADL+L L ++ + ++ ++ + + K DL + + H I Sbjct: 299 QADLVLYLLDASQPWQVEDEPQLQALRDQSILVVLNKIDLPRVLQPAAIPSAWPHHLIEI 358 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGL 402 S+ TGEG+ L I L I + RH HL +L+ A + + Sbjct: 359 SALTGEGIPALKEAIFQAGMGGASPLDGQIVTQARHCRHLEHCRHHLQGAWKIIQTAQPR 418 Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++A LR A L I G +++LD +F++FC+GK Sbjct: 419 ELLALELRSALQELSAILGLEVDDEVLDRVFARFCLGK 456 >gi|149193806|ref|ZP_01870904.1| tRNA modification GTPase TrmE [Caminibacter mediatlanticus TB-2] gi|149135759|gb|EDM24237.1| tRNA modification GTPase TrmE [Caminibacter mediatlanticus TB-2] Length = 443 Score = 218 bits (555), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 152/446 (34%), Positives = 244/446 (54%), Gaps = 15/446 (3%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 ETI A++T AISI+R+SG + ++ + + KK PR A L + + ++D L Sbjct: 2 ETIAAIATPNGVGAISIVRVSGDNALEIAKKLTKKDDFPPRVAKLCKVYDSNDELIDIAL 61 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 +I F +P SFTGED EF HGG+ V ILEE+ K N RLANPGEF++RA NGKID Sbjct: 62 VIYFKAPNSFTGEDIVEFQCHGGVVVSKFILEEVLKH-NCRLANPGEFTKRALLNGKIDA 120 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++A LI + + +L + GELS + +KL I ++ E +D++EE D+ Sbjct: 121 SQAEAIAKLIETRSREGAKLLSRQLEGELSKFVEEVREKLIEIMAYSEVFIDYAEE-DLP 179 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 K++ + ++ + + K E I +GYK+ I+G N GKSS+ N L K A Sbjct: 180 ESLGKDIEERLKNIEALLKKTLEASKRREGILSGYKVAIVGKPNVGKSSILNKLLNKQRA 239 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IV+DI GTTRD + D+ + +L++I DTAGIR D +EK G++R+ ++ AD++L + Sbjct: 240 IVSDIAGTTRDTIEEDIQIGSHLIRIIDTAGIRAAKDEIEKIGVERSKESIKKADIVLAV 299 Query: 306 ---KEINSKKE--ISFPKNI--DFIFIGTKSD----LYSTYTEEYDHLISSFTGEGLEEL 354 E N + E + KN+ D I + K D + Y + + ++ E + L Sbjct: 300 FDGSEFNKEDEEILDLIKNLDKDVIIVINKVDKGIKINLNYFKNF-KIVKISAKEDITPL 358 Query: 355 INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASV 414 I K+K IL + F I R + + + + + A K L++ + +++ A Sbjct: 359 IEKLKEIL-DSFSSEDEHILISTRQISAVQKALNSIYEAKEFLKTGELELFSYHIQDAIR 417 Query: 415 SLGKITGCVDVEQLLDIIFSKFCIGK 440 + +IT + +++LD +FS FC+GK Sbjct: 418 FISEITKPFEYDEMLDKMFSSFCVGK 443 >gi|306829480|ref|ZP_07462670.1| tRNA modification GTPase TrmE [Streptococcus mitis ATCC 6249] gi|304428566|gb|EFM31656.1| tRNA modification GTPase TrmE [Streptococcus mitis ATCC 6249] Length = 457 Score = 218 bits (555), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 150/460 (32%), Positives = 261/460 (56%), Gaps = 24/460 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKAS--LRYFFGLD- 57 + E +TI A+ST AI I+RLSG F + + I K K + AS L Y +D Sbjct: 2 ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIVQKIFKGKD-LSKVASHTLNYGHIVDP 60 Query: 58 --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 G I+D+ ++ SP++FT ED E + HGGIAV N IL+ L R+A PGEF++ Sbjct: 61 QTGEIMDEVMVGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LVIREGARMAEPGEFTK 119 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG++DL +AE++ D+I ++T+ ++++ + G LS L ++ + + +E + Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 179 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +D+ E +DV+ ++ V + + +++ + + G+I+R G I+G N GKSSL Sbjct: 180 IDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPNVGKSSL 239 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N L ++D AIVTDI GTTRDV+ +++ G +K+ DTAGIRETDDIVE+ G++R+ Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDDIVEQIGVERSRKA 299 Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDL-YSTYTEEYDH---LISS 345 ++ ADL+LL+ + ++ + ++ + I + K+DL + T E IS Sbjct: 300 LKEADLVLLVLNASEPLTAQDRQLLEISQDTNRIILLNKTDLPEAIETSELPEDVIRISV 359 Query: 346 FTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGL 402 + ++++ +I ++ + + + S+ RH+ + + V L+ ++NE + G+ Sbjct: 360 LKNQNIDKIEERINNLFFENAGLVEQDATYLSNARHISLIEKAVESLQ--AVNEGLELGM 417 Query: 403 --DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D++ +L LG+ITG ++L+ +FS+FC+GK Sbjct: 418 PVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457 >gi|28883199|gb|AAO50079.1| tRNA-modification protein [Pseudomonas syringae pv. phaseolicola] Length = 461 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 142/410 (34%), Positives = 217/410 (52%), Gaps = 23/410 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 MN +ETI A++T + I+R+SGP + E I + PR A F G++ Sbjct: 1 MNVPRETIAAIATAQGRGGVGIVRVSGPLAGRAAEAIIGRTLK-PRFAHYGPFVDDAGQV 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG V++ +L+ ++ + RLA PGEFS RAF N Sbjct: 60 LDEGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQLGS-RLARPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + + R ++ + G S +KL +R ++EA +DF E Sbjct: 119 DKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSRRVDNLTEKLISLRIYVEAAIDFPE 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + + VLN + ++ ++S+ + + G ++R+G +VI G NAGKSSL NALA Sbjct: 179 EE-IDFLADGHVLNMLDDVRAELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVT+I GTTRDVL + ++G + + DTAG+R+T D VE G++R + AD Sbjct: 238 GREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTQDQVEMIGVQRALKAIGEAD 297 Query: 301 LILLLKEINSKKEI-----------SFPKNIDFIFIGTKSDLYST----YTEEYDHLISS 345 ILL+ + + + P I K+DL T H+ S Sbjct: 298 RILLVVDATAPEAADPFALWPEFLEQRPDPAKVTLIRNKADLSGDPIDLQTSVDGHVTIS 357 Query: 346 FT----GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391 + G GLE L +K+ + + + S + +RHL L LE Sbjct: 358 LSARSGGAGLELLREHLKACMGYE-QTSESSFSARRRHLEALRHASDSLE 406 >gi|209524294|ref|ZP_03272844.1| tRNA modification GTPase TrmE [Arthrospira maxima CS-328] gi|209495385|gb|EDZ95690.1| tRNA modification GTPase TrmE [Arthrospira maxima CS-328] Length = 469 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 153/477 (32%), Positives = 251/477 (52%), Gaps = 48/477 (10%) Query: 1 MNHEKETIFAVSTGALPS--AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-- 56 ++ + ETI A++T +P +I I+R+SG + + + K P +S R +G Sbjct: 4 ISTKTETIAAIATAIVPQQGSIGIVRMSGSEAVAIAKTLFKAPGNQP-WSSHRILYGYIH 62 Query: 57 ---DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEF 113 +++D+ LL++ +P S+T ED EFH HGGI V +L+ L RLA PGEF Sbjct: 63 HPHTQQLVDEALLLLMLAPRSYTREDVVEFHCHGGIIPVQQVLQ-LCLQAGARLATPGEF 121 Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSF-- 171 + RAF NG++DL +AES+A+L+ +++ ++ G+ G+L++ + H+RS Sbjct: 122 TLRAFLNGRLDLTQAESVAELVGAKSPQAASAALAGLRGKLAA-------PIHHLRSLCL 174 Query: 172 -----IEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILG 226 IEA +DF EED+ + E+++ + + ++ + GE++R G K+ I+G Sbjct: 175 DILAEIEARVDF--EEDLPPLNESEIIHQLQEVLQQLTDILDTADRGELLRTGLKVAIVG 232 Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEK 286 N GKSSL NA ++ D AIVTD+PGTTRDV+ L + G +++ DTAGIR++DD VE+ Sbjct: 233 RPNVGKSSLLNAWSRSDRAIVTDLPGTTRDVVESQLVVGGIPIQVLDTAGIRKSDDKVEQ 292 Query: 287 EGIKRTFLEVENADLILLLKE-----INSKKEI-SFPKNIDFIFIGTKSD-LYSTYTEEY 339 G++R+ + ++ADL+L + ++ EI KN I + KSD L S E Sbjct: 293 IGVERSQIAAQSADLVLFTLDCENGWTEAENEIYQQVKNRPIIIVMNKSDRLSSAQLENL 352 Query: 340 DHLI--------------SSFTGEGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLS 384 I ++ +G+ +L I ++ + + ++R L+ Sbjct: 353 RQSIINQLDIKPSLIIATAATLNQGITDLEESILNAVHTENLQSANLEFAINQRQAAALT 412 Query: 385 QTVRYLEMASLNEKD-CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + LE D D +LR A +LG++TG E +LD IFS+FCIGK Sbjct: 413 RAKIALEQVENTISDRLPFDFWTIDLRGAIHALGEVTGEEVTESVLDRIFSRFCIGK 469 >gi|227550631|ref|ZP_03980680.1| tRNA modification GTP-binding protein TrmE [Enterococcus faecium TX1330] gi|227180232|gb|EEI61204.1| tRNA modification GTP-binding protein TrmE [Enterococcus faecium TX1330] Length = 492 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 156/469 (33%), Positives = 266/469 (56%), Gaps = 42/469 (8%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC----KKKKPFPRKASLRYFFGLDGR 59 E +TI A+ST AISI+RLSG Q+ + + K+ P ++ Y +D + Sbjct: 34 EFDTIAAISTPPGEGAISIVRLSGDQAVQLADKVYHSGNKRLSEVPSH-TIHYGHIVDPK 92 Query: 60 ---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 ++D+ ++ V +P++FT ED E + HGGI VVN IL+ L + RLA PGEF++R Sbjct: 93 SDQLVDEVMVSVMRAPKTFTREDVVEINCHGGIVVVNQILQLLLR-EGARLAEPGEFTKR 151 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NG++DL +AE++ DLI ++T+ L++ + G LS+L ++ + +E ++ Sbjct: 152 AFLNGRVDLSQAEAVMDLIRAKTDKAMGLALNQLDGNLSALIRSLRQEILETLAQVEVNI 211 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D+ E +DV+ ++K +L ++ I + ++ K G+++R G I+G N GKSSL Sbjct: 212 DYPEYDDVEELTTKLLLEKAQMIQQRIQALLATSKQGKVLREGLSTAIIGRPNVGKSSLL 271 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N L +++ AIVTDI GTTRDV+ +++ G +K+ DTAGIRET+D+VE+ G++R+ + Sbjct: 272 NHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSRKAL 331 Query: 297 ENADLILLL----KEINSKKE--ISFPKNIDFIFIGTKSDLYSTYTEE-YDHL------- 342 ADLILL+ + + ++ E + K + I + K+DL + +E + L Sbjct: 332 AEADLILLVLNQSEPLTAEDEQLLEATKGLKRIILLNKTDLPAQLEQEKLNKLIENEPVF 391 Query: 343 -ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT--VRYLEMASLNEK- 398 IS +GL+ L +S +S+ F FS + +R ++S T + LE ASL+ + Sbjct: 392 SISVAKNDGLDHL----ESAISDLF----FSGETGERDATYVSNTRHIALLEKASLSLEE 443 Query: 399 -----DCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D G+ D++ ++ LG++ G ++L+ +FS+FC+GK Sbjct: 444 VIAGIDAGMPVDLVQIDMTRCWDYLGEVVGDSVQDELITQLFSQFCLGK 492 >gi|332300821|ref|YP_004442742.1| tRNA modification GTPase mnmE [Porphyromonas asaccharolytica DSM 20707] gi|332177884|gb|AEE13574.1| tRNA modification GTPase mnmE [Porphyromonas asaccharolytica DSM 20707] Length = 470 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 156/481 (32%), Positives = 256/481 (53%), Gaps = 52/481 (10%) Query: 1 MNHE-KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR 59 M H+ ETI A +T AL +++IR+SG Q+ E + K+ PR+A+ +DG+ Sbjct: 1 MIHDLSETICAPAT-ALGGGLAVIRISGSLAPQIAERLLGKRLT-PREAT-TAGLRIDGQ 57 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 ++D + F +P S+TGE+ E H +V ILE +A+ R+A+PGEF+RRA Sbjct: 58 LIDLVVATYFAAPHSYTGEEVVELSCHASPYIVRSILEWIAQQEGCRMADPGEFTRRALA 117 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 +GK+DL EAE++ADLI++ T Q +++ME +G LS L + L +E +LDFS Sbjct: 118 HGKLDLAEAEAVADLIAATTATQHKMAMEQHTGRLSHLLNELRATLLRFAGLLELELDFS 177 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 EEDV ++ + +++ + G+ ++ G I+G N GKSSL NAL Sbjct: 178 -EEDVAFADRSTLVETLATIQHQLRLLTQSFSTGQELQQGIPTAIIGAPNVGKSSLLNAL 236 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 + + AIV+DIPGTTRD + L + G L ++ DTAG+R+T D+VE+ GI+R++ ++ +A Sbjct: 237 LQHERAIVSDIPGTTRDTVEGRLTIRGTLFRLIDTAGLRQTTDLVEQLGIERSYQQISSA 296 Query: 300 DLILLL------------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL----- 342 LIL + +++ ++ P++ + + K DL T E D L Sbjct: 297 RLILWVIAPPLPTWDELEAQLSEILRLTSPESTLMLLLN-KRDLL-TEREVTDWLSNCSS 354 Query: 343 ----------------ISSFTGEGLEEL----INKIKSILSNKFKKLPFSIPSHKRHLYH 382 IS+ +G+E L + +++ S++ + +++ RH Sbjct: 355 LLQRTNGKPHTTSPLAISARAAQGIETLEELMVTSTQTLHSDEETVMLYNL----RHYEA 410 Query: 383 LSQTVRYLEMASLNEKDCGL--DIIAENLRLASVSLGKITGC-VDVEQLLDIIFSKFCIG 439 L++ R LE+ S + GL D+I LR A +G +TG + +++L IFS FCIG Sbjct: 411 LTKASRALELVSEGLHN-GLTSDLITPYLREAIEEIGLVTGASITSDEVLGFIFSHFCIG 469 Query: 440 K 440 K Sbjct: 470 K 470 >gi|251782601|ref|YP_002996904.1| tRNA modification GTPase TrmE [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391231|dbj|BAH81690.1| tRNA(5-carboxymethylaminomethyl-2-thiouridylate)synthase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 458 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 147/460 (31%), Positives = 262/460 (56%), Gaps = 24/460 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD- 57 + E +TI A+ST AI I+RLSG + + + K K + AS +G +D Sbjct: 3 ITKEFDTITAISTPLGEGAIGIVRLSGTDALAIAQSVFKGKN-LEQVASHTINYGHIIDP 61 Query: 58 --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 G I+D+ ++ V +P++FT E+ E + HGGIAV N IL+ L + R+A PGEF++ Sbjct: 62 KTGTIIDEVMVSVMLAPKTFTRENVVEINTHGGIAVTNEILQLLIRQ-GARMAEPGEFTK 120 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG++DL +AE++ D+I ++T+ ++++ + G LS L ++ +I + +E + Sbjct: 121 RAFLNGRVDLTQAEAVMDIIRAKTDKAMTIAVKQLDGSLSQLINDTRQEILNILAQVEVN 180 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +D+ E +DV+ ++ + ++ + + + K G+I+R G I+G N GKSSL Sbjct: 181 IDYPEYDDVEEMTTALLREKTQEFQSLLENLLRTAKRGKILREGLSTAIIGRPNVGKSSL 240 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N L ++D AIVTDI GTTRDV+ ++++G +K+ DTAGIRETDD+VE+ G++R+ Sbjct: 241 LNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAGIRETDDLVEQIGVERSKKA 300 Query: 296 VENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEEY---DHL-ISS 345 ++ ADL+LL+ + K ++ ++ + I + K+DL E D++ IS Sbjct: 301 LQEADLVLLVLNASEKLTDQDRALLNLSQDSNRIILLNKTDLEQKIELEQLPDDYIPISV 360 Query: 346 FTGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK---DC 400 T + + + ++I + + + + S+ RH+ + + V+ LE ++N+ Sbjct: 361 LTNQNINLIEDRINQLFFDNAGLVEQDATYLSNARHISLIEKAVQSLE--AVNDGLALGM 418 Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+ITG ++L+ +FS+FC+GK Sbjct: 419 PVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 458 >gi|167754411|ref|ZP_02426538.1| hypothetical protein ALIPUT_02705 [Alistipes putredinis DSM 17216] gi|167659036|gb|EDS03166.1| hypothetical protein ALIPUT_02705 [Alistipes putredinis DSM 17216] Length = 461 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 156/465 (33%), Positives = 248/465 (53%), Gaps = 29/465 (6%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LDG 58 MN +TI A +T A AI++IRLSGP C+ I + +KP A +G +DG Sbjct: 1 MNTSTDTIVAPAT-ASGGAIAVIRLSGPEAIACCDRIFRGRKPLAEAAGHTLHYGEVIDG 59 Query: 59 -RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 R +D + ++ +P S+TGED+ E HG +V+ I+ L + R+A PGEF+ RA Sbjct: 60 DRTIDDVVAAIYRAPHSYTGEDAVELSCHGSPYIVSEIIALLLR-SGARMAQPGEFTIRA 118 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F G++DL +AE++ADLI+S++ ++ M G S+ G D+L + S +E +LD Sbjct: 119 FLAGRMDLAQAEAVADLIASDSRASHAMASTQMRGGYSAALGALRDELLQLASLLELELD 178 Query: 178 FSEEEDVQNFSSKEVLNDILF-LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 FSEE DVQ F+ + L +++ ++++I+ +LG I+ G + I+G N GKS+L Sbjct: 179 FSEE-DVQ-FADRARLREMMHRIESEITRLTDSFRLGNTIKKGVAVAIVGEPNVGKSTLL 236 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N L ++ A+V+DI GTTRD + L+++G L + DTAG+ +T D +E+ GI RT + Sbjct: 237 NRLLGEERALVSDIAGTTRDTIEETLNIDGVLFRFIDTAGLHDTADRLEQMGIDRTQEMI 296 Query: 297 ENADLILLLKEINS--KKEISFPKNIDFIFIGTKSDL-----------------YSTYTE 337 A ++L + + I + I K D Y + Sbjct: 297 RRAQIVLQVVDATCPIPPAIQITSEQTRLLIVNKCDSPDARITESKVSSGCGIEYRVSSA 356 Query: 338 EYDHL-ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SL 395 D L IS+ TGEG+E L+ ++++ + S+ RHL L Q + L A + Sbjct: 357 NPDTLFISAKTGEGIERLLARLRATFDTGSIYDGDPVISNSRHLEALRQALDALHRALTA 416 Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + D D+++E++R LG ITG + + +L IFSKFCIGK Sbjct: 417 LDDDRSADLLSEDIRQVIHHLGTITGEITNDDILSQIFSKFCIGK 461 >gi|90194092|gb|ABD92607.1| ThdF [Actinobacillus hominis] Length = 435 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 150/437 (34%), Positives = 237/437 (54%), Gaps = 30/437 (6%) Query: 19 AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGE 78 + I+R+SGP +V + + K+ PR A+ F DG +LD+G+ + F +P SFTGE Sbjct: 7 GVGILRISGPLAQEVAKEVLGKELK-PRLANYLPFKDQDGTVLDQGIALFFKAPNSFTGE 65 Query: 79 DSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSE 138 D E HGG +++ +L+ + + +R+A GEFS +AF N K+DL +AE++ADLI + Sbjct: 66 DVLELQGHGGQVILDILLKRILAVKGVRIARAGEFSEQAFLNDKLDLAQAEAIADLIDAT 125 Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV---LND 195 +E R +++ + GE S+ Q +D + ++R+++EA +DF +EE + + ++ LND Sbjct: 126 SEQAARSALKSLQGEFSNKINQLVDSVIYLRTYVEAAIDFPDEE-IDFLADGKIEGHLND 184 Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255 I+ N + QG + +G G NAGKSSL NALA ++ AIVT+I GTTR Sbjct: 185 IIRQLNGVRQEAKQGAICVRDESGDA----GRPNAGKSSLLNALAGREAAIVTNIAGTTR 240 Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 DVL + ++G + I DTAG+RE D VEK GI+R + E+E AD +LL+ + + + Sbjct: 241 DVLREHIHIDGMPLHIIDTAGLREASDEVEKIGIQRAWDEIEQADHVLLMIDSTEQTAEA 300 Query: 316 F-----------PKNIDFIFIGTKSDLY--STYTEEYDHL----ISSFTGEGLEELINKI 358 F P+NI I K DL S +E D +S+ T G++ L + Sbjct: 301 FKTEWADFLAKLPQNIPVTVIRNKVDLSGESESLQELDGFTLIRLSAQTKVGVDLLREHL 360 Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLASVSL 416 K + + + +RHL L +LE L + G +++AE LR+ +L Sbjct: 361 KKSMGYQ-SSTEGGFLARRRHLQALETAAEHLERGHIQLTQFFAG-ELLAEELRMVQNAL 418 Query: 417 GKITGCVDVEQLLDIIF 433 +ITG + LL IF Sbjct: 419 SEITGQFTSDDLLGNIF 435 >gi|166367612|ref|YP_001659885.1| tRNA modification GTPase TrmE [Microcystis aeruginosa NIES-843] gi|205415798|sp|B0JVV0|MNME_MICAN RecName: Full=tRNA modification GTPase mnmE gi|166089985|dbj|BAG04693.1| thiophen and furan oxidation protein [Microcystis aeruginosa NIES-843] Length = 457 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 154/463 (33%), Positives = 245/463 (52%), Gaps = 29/463 (6%) Query: 1 MNHEKETIFAVSTGALP--SAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL 56 M + +TI A++T +P +I I+RLSG + F ++ + S R +G Sbjct: 1 MLNTGDTIAAIATAIVPEQGSIGIVRLSGSEAVAIARRLFHSPNRQKW---QSHRLLYGY 57 Query: 57 -----DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPG 111 I+D+ LL++ +P SFT ED EFH HGGI V +L+ L RLA G Sbjct: 58 IRHPQSQAIIDEALLLLMLAPRSFTREDVVEFHCHGGIMPVQQVLQ-LCLENGARLAQAG 116 Query: 112 EFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSF 171 EFS RAF NG+IDL +AES+ DL+ + + + ++ G+ G+L+ I + Sbjct: 117 EFSLRAFLNGRIDLTQAESVVDLVGARSPQAAQFALAGLQGKLAQPIRHLRATCLDILAE 176 Query: 172 IEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAG 231 IEA +DF EED+ VL+ I + ++ ++ + GE++R+G K+ I+G N G Sbjct: 177 IEARIDF--EEDLPPLDHAAVLHSIEQVFCQVNLILATAERGELLRSGLKVAIVGRPNVG 234 Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR 291 KSSL NA ++ D AIVTD+PGTTRD++ L + G V++ DTAGIR D VE+ G++R Sbjct: 235 KSSLLNAWSRSDRAIVTDLPGTTRDIVESQLVVAGIPVQVLDTAGIRSASDRVEQIGVER 294 Query: 292 TFLEVENADLILLLKEINS---KKEISFPKNID---FIFIGTKSDLYSTYTEEYDHLI-- 343 + +ADL+LL S +++ +++ I + K DL + T Y I Sbjct: 295 SRQTARSADLVLLTVSAESGWTQEDEEIYRSVSDRRLILVINKIDLANPETVIYPAEIKR 354 Query: 344 ----SSFTGEGLEELINK-IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-E 397 S+ +G+E+L I ++ + + + + ++R L++ L+ + Sbjct: 355 VVKLSAAQNQGIEDLEKSLINAVQNQELQAANLDLAINQRQAAALTRAKIALQQVKKTID 414 Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++ D + +LR A SLG+ITG E +LD IFS+FCIGK Sbjct: 415 QNLPFDFWSIDLRTAIQSLGEITGEEVTESVLDRIFSRFCIGK 457 >gi|302660640|ref|XP_003021997.1| hypothetical protein TRV_03891 [Trichophyton verrucosum HKI 0517] gi|291185921|gb|EFE41379.1| hypothetical protein TRV_03891 [Trichophyton verrucosum HKI 0517] Length = 594 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 127/326 (38%), Positives = 187/326 (57%), Gaps = 35/326 (10%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLDGR 59 + + TI+A+ST +AI+IIR+SGP C + +C +K P PR A+LR + Sbjct: 40 QDEKPTTIYALSTAPGRAAIAIIRISGPDCIPIYNALCPNRKLPKPRFAALRTIYEPGKP 99 Query: 60 I-----LDKGLLIV-FPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN--------L 105 + LD G L+ FP+P + TGED E HVHGG AV+ IL + K + + Sbjct: 100 VSADNALDSGALVFHFPAPNTVTGEDVLELHVHGGPAVIKSILSAIPKCASPGDAPSASI 159 Query: 106 RLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKL 165 R A PGEF+RRAF N ++DL + E+L + ++++TE QRRL++ G + LS+ Y QW +L Sbjct: 160 RYAEPGEFTRRAFLNDRLDLPQIEALGNTLAADTEQQRRLAIRGTNDALSTRYEQWRKQL 219 Query: 166 THIRSFIEADLDFSEE----EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK 221 + R +EA +DFSE+ E V +F S V + L + I+ HI GE++R+G K Sbjct: 220 LYARGELEALIDFSEDQHFDESVDDFISS-VTGQVDSLLHQINLHIKNASKGELLRSGIK 278 Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--- 278 + +LG NAGKSSL N + +D AIV+ GTTRD++ + +DL G+L K D AG+R Sbjct: 279 VALLGAPNAGKSSLLNQIVGRDAAIVSSEEGTTRDIVDVGIDLGGWLCKFGDMAGLRSKL 338 Query: 279 ------------ETDDIVEKEGIKRT 292 T +E+EGI+R Sbjct: 339 SQSQIPAQGHVFSTVGKIEEEGIRRA 364 >gi|282902629|ref|ZP_06310522.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus C160] gi|282597088|gb|EFC02047.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus C160] Length = 459 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 153/465 (32%), Positives = 254/465 (54%), Gaps = 39/465 (8%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK---KPFPRKASLRYFFGLDGRILD 62 +TI ++ST AI I+RLSGP ++ + + K K P ++ Y G I+D Sbjct: 4 DTITSISTPMGEGAIGIVRLSGPQAVEIADKLYKGKHLLNDVP-PHTINY-----GHIID 57 Query: 63 --------KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114 + ++ V +P++FT ED E + HGGI +N +LE L R+A PGEF+ Sbjct: 58 PESKEVVEEVMVSVLRAPKTFTREDIIEINCHGGILTINRVLE-LTMTYGARMAEPGEFT 116 Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174 +RAF NG+IDL +AE++ D I S+T+ +++M + G LS L + + I + +E Sbjct: 117 KRAFLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEILAQVEV 176 Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234 ++D+ E +DV++ +++ +L +K +I+ + G G+I+R G VI+G N GKSS Sbjct: 177 NIDYPEYDDVEDATTEFLLEQSKEIKQEINRLLDTGAQGKIMREGLSTVIVGKPNVGKSS 236 Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294 + N L + + AIVT++ GTTRDVL +++ G +++ DTAGIRET+DIVEK G++R+ Sbjct: 237 MLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRETEDIVEKIGVERSRK 296 Query: 295 EVENADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTY-TEEYDHLI-- 343 + ADLIL + +N+ + ++ KN D I I K DL E +I Sbjct: 297 ALSQADLILFV--LNNNEALTQEDYTLYEVVKNEDVIVIVNKMDLEQNIDINEVKDMIGD 354 Query: 344 ------SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SL 395 S EG++EL +I+ + + + + S+ RH+ L Q + ++ A Sbjct: 355 TPLIQTSMLKQEGIDELEIQIRDLFFGGEVQNQDMTYVSNSRHISLLKQARQTIQDAIDA 414 Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E +D++ +L LG+I G ++L+D +FS+FC+GK Sbjct: 415 AESGVPMDMVQIDLTRTWEILGEIIGETASDELIDQLFSQFCLGK 459 >gi|24212880|ref|NP_710361.1| tRNA modification GTPase [Leptospira interrogans serovar Lai str. 56601] gi|26454677|sp|P97043|MNME_LEPIN RecName: Full=tRNA modification GTPase mnmE gi|24193543|gb|AAN47379.1| tRNA modification GTPase [Leptospira interrogans serovar Lai str. 56601] Length = 456 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 157/459 (34%), Positives = 241/459 (52%), Gaps = 29/459 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF-------PRKASLRYFFGLDG 58 +TI AVST + AI IIR+SGP + K F PR A ++ F + Sbjct: 3 DTIAAVSTSSGAGAIGIIRMSGPEALTISSSFLFSKNKFLSPSEILPRTA-IQCVFQIGD 61 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 R +D+ L F SP S+TGED EFH HG ++ L+ + + R A GEFSRRAF Sbjct: 62 RKIDQILFFYFKSPNSYTGEDLCEFHFHGNPILLREALDAIFR-AGARPAKQGEFSRRAF 120 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 N K+DL E E++ LIS+ + + L+ + + GE++ +L +++ EA++DF Sbjct: 121 LNEKLDLTEVEAIGRLISARSRFELELAQKNVFGEVTRFTSNLRSQLISLKAECEAEIDF 180 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 S E D+ S +E I +K+ + IS+ E + ++IV+ G N GKSSL N Sbjct: 181 STE-DLTYESLEERKTRIENVKSLCQTLISKSSSAEKLIQQFRIVLYGEPNTGKSSLMNV 239 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L K+ +I+++IPGTTRD ++ ++ LEG V++ DTAG+RET D +EK GI+R+ E ++ Sbjct: 240 LLGKERSIISEIPGTTRDYISEEILLEGIPVRLVDTAGVRETTDHIEKLGIERSEKEFQS 299 Query: 299 ADLILLLKEINSKKE----------------ISFPKNIDFIFIGTKSDLYSTYTEEYDHL 342 AD+ L L ++ SKKE I ID + +L+S + Sbjct: 300 ADIRLFLVDV-SKKENWKEFINKSRERLEGSILIANKIDILNSSWDRNLFSDVKDLIVLE 358 Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCG 401 IS T EG+ L++ IK + K + +R YH VR L+ L ++ Sbjct: 359 ISCKTKEGISNLLDAIKE-RTGKLGHSEDYVLLEERQRYHFETIVRCLDKTLHLLKEGAP 417 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +I + + A +G++ G VD E++L IFSKFC+GK Sbjct: 418 AEIYIQEINYALAEIGEVNGKVDTEEVLGRIFSKFCVGK 456 >gi|255659827|ref|ZP_05405236.1| tRNA modification GTPase TrmE [Mitsuokella multacida DSM 20544] gi|260847902|gb|EEX67909.1| tRNA modification GTPase TrmE [Mitsuokella multacida DSM 20544] Length = 461 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 157/466 (33%), Positives = 246/466 (52%), Gaps = 34/466 (7%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFG--LD- 57 + +TI A++T I +IR+SG + F K KP S +G +D Sbjct: 2 QQGDTISAIATPQGEGGIGVIRISGEHALKTAGKVFEAKNGKPLVLAGSHHAVYGHIVDE 61 Query: 58 -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 G+++D+ L +V +P S+T ED E HGG+ + LE L R A GEF++R Sbjct: 62 KGQVVDEALALVMLAPHSYTVEDVVELQCHGGLMTLRKTLE-LTWKAGARPAERGEFTKR 120 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTH----IRSFI 172 AF NG++DL EA+++ D+I + TE S+ +G L+ + + I + H + + I Sbjct: 121 AFLNGRLDLSEAQAVMDIIQARTET----SLTMAAGHLTGHFSKGIHAMRHEILGMIAHI 176 Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232 EA +DF E+E V + + ++ +++ ++N I+ + G I+R+G I+G N GK Sbjct: 177 EAAIDFPEDE-VDDVLTYDIQKNVVEIRNKIAGLLQTAHAGRILRDGLLTAIIGKPNVGK 235 Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292 SSL N+L +++ AIVTD+PGTTRD + D+ G ++I DTAGIR TDD+VE+ G+++ Sbjct: 236 SSLLNSLLREERAIVTDVPGTTRDSIEEYADVGGIPLRIIDTAGIRATDDVVERIGVEKA 295 Query: 293 FLEVENADLILLL----KEINSKKE--ISFPKNIDFIFIGTKSDLYSTYTEEY--DHL-- 342 V+ A LIL L + ++S+ E + + D I + K DL T E H+ Sbjct: 296 RSYVKEAALILALFDASRPLDSEDEEILKLVRGRDAILLLNKDDLQPVVTAEMLQRHVKK 355 Query: 343 ------ISSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL 395 IS+ T +GLE L I + + + + + R L Q +L A Sbjct: 356 EVPVITISTRTQDGLENLAKAITAKVYAGTQAGQEGTFVTDARQAEVLRQADEHLAAAIR 415 Query: 396 N-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E D GLD I+ +LR A LG++TG E +++ IFSKFCIGK Sbjct: 416 TIEADMGLDFISIDLRSAWEKLGELTGETVGEDIINEIFSKFCIGK 461 >gi|21910288|ref|NP_664556.1| tRNA modification GTPase TrmE [Streptococcus pyogenes MGAS315] gi|28895865|ref|NP_802215.1| tRNA modification GTPase TrmE [Streptococcus pyogenes SSI-1] gi|25453303|sp|Q8K7L5|MNME_STRP3 RecName: Full=tRNA modification GTPase mnmE gi|21904483|gb|AAM79359.1| putative thiophene degradation protein F [Streptococcus pyogenes MGAS315] gi|28811115|dbj|BAC64048.1| putative thiophene degradation protein F [Streptococcus pyogenes SSI-1] Length = 458 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 147/460 (31%), Positives = 262/460 (56%), Gaps = 24/460 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD- 57 + E +TI A+ST AI I+RLSG + + + K K + AS +G +D Sbjct: 3 ITKEFDTITAISTPLGEGAIGIVRLSGTDALAIAQSVFKGKN-LEQVASHTINYGHIIDP 61 Query: 58 --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 G I+D+ ++ V +P++FT E+ E + HGGIAV N IL+ L + R+A PGEF++ Sbjct: 62 KTGTIIDEVMVSVMLAPKTFTRENVVEINTHGGIAVTNEILQLLIRQ-GARMAEPGEFTK 120 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG++DL +AE++ D+I ++T+ ++++ + G LS L ++ + + +E + Sbjct: 121 RAFLNGRVDLTQAEAVMDIIRAKTDKAMTIAVKQLDGSLSQLINDTRQEILNTLAQVEVN 180 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +D+ E +DV+ ++ + ++ + + + K G+I+R G I+G N GKSSL Sbjct: 181 IDYPEYDDVEEMTTALLREKTQEFQSLLENLLRTAKRGKILREGLSTAIIGRPNVGKSSL 240 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N L ++D AIVTDI GTTRDV+ ++++G +K+ DTAGIRETDD+VE+ G++R+ Sbjct: 241 LNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAGIRETDDLVEQIGVERSKKA 300 Query: 296 VENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEEY---DHL-ISS 345 ++ ADL+LL+ + K ++ ++ + I + K+DL E D++ IS Sbjct: 301 LQEADLVLLVLNASEKLTDQDRALLNLSQDSNRIILLNKTDLEQKIELEQLPDDYIPISV 360 Query: 346 FTGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK---DC 400 T + + + ++I + + + + S+ RH+ + +TV+ LE ++N+ Sbjct: 361 LTNQNINLIEDRINQLFFDNAGLVEQDATYLSNARHISLIEKTVQSLE--AVNDGLALGM 418 Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+ITG ++L+ +FS+FC+GK Sbjct: 419 PVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 458 >gi|89256498|ref|YP_513860.1| tRNA modification GTPase TrmE [Francisella tularensis subsp. holarctica LVS] gi|156502609|ref|YP_001428674.1| tRNA modification GTPase TrmE [Francisella tularensis subsp. holarctica FTNF002-00] gi|122500633|sp|Q2A342|MNME_FRATH RecName: Full=tRNA modification GTPase mnmE gi|166991110|sp|A7NCL5|MNME_FRATF RecName: Full=tRNA modification GTPase mnmE gi|89144329|emb|CAJ79616.1| tRNA modification GTPase trmE family protein [Francisella tularensis subsp. holarctica LVS] gi|156253212|gb|ABU61718.1| tRNA modification GTPase [Francisella tularensis subsp. holarctica FTNF002-00] Length = 450 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 157/465 (33%), Positives = 254/465 (54%), Gaps = 43/465 (9%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62 + K+TI A++T I IIR+SG ++ E + KK+ PR A+ + D I+D Sbjct: 2 YTKDTIVAIATPQGNGGIGIIRISGIDALEIAEKLTKKQLK-PRYATFCNVYN-DNEIID 59 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 G++I F +P S+TGED E HG ++N I++ A R+A GEF+ RAF N K Sbjct: 60 HGIVIFFKAPLSYTGEDVVEIQAHGNPFILNLIIKA-ALNCGARMAKAGEFTERAFLNNK 118 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 +DL +AE++AD+I++ +E+ + + + + G+ S ++KL ++R ++EA +DF EEE Sbjct: 119 LDLAQAEAVADIINASSEIAAKSAAKSLQGDFSKEINNLLEKLIYLRMYVEASIDFPEEE 178 Query: 183 -----DVQNFSS-KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D + SS +E+ IL +KN K G I+ G ++++G NAGKSSL Sbjct: 179 INFLEDQKIHSSLEEIYKVILAIKNSC-------KQGVILAEGITLILVGKPNAGKSSLL 231 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 NALA K+ AIVT I GTTRD++ + + G + I DTAG+R +DDI+E EGIKR ++ Sbjct: 232 NALAGKESAIVTSIAGTTRDIVKEHIQINGVPMHIIDTAGLRNSDDIIESEGIKRAIKKI 291 Query: 297 ENADLILLLKEINSKKEISF--------------PKNIDFIFIGTKSDLYSTYTEEY-DH 341 + AD +L + + + ++ F PK+ID ++ K DL + +H Sbjct: 292 QEADQVLFVTDDYTNSQVKFSDIKEIIPEFYDQIPKDIDITYVHNKIDLLKEVPHNHANH 351 Query: 342 L-ISSFTGEGL----EELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMASL 395 + IS+ G+ E ++NK+ N+ SI + +RH+ ++ ++++A Sbjct: 352 IYISAENNIGIDKLKEHILNKVGYTNQNE------SIYTARERHVTAINNAFEHIKLAKE 405 Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + +++AE L + L ITG + LL IFS FCIGK Sbjct: 406 QLELGNGELLAEELLIVQEYLNSITGEFSSDDLLGEIFSSFCIGK 450 >gi|327438167|dbj|BAK14532.1| predicted GTPase [Solibacillus silvestris StLB046] Length = 461 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 152/461 (32%), Positives = 254/461 (55%), Gaps = 25/461 (5%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK--KKKPFPRKASLRYFFG--LDGR 59 E +TI A+ST AI+I+RLSG + + I K K A+ +G +D + Sbjct: 2 EFDTIAAISTPMGEGAIAIVRLSGDEAVAIADKIFKSPNHKRLTEVATHTIHYGHLIDPK 61 Query: 60 ---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 ++++ +L + P++FT ED E + HGGI VN +L+ L RLA PGEF++R Sbjct: 62 TDEVVEEVMLSLMRGPKTFTREDVVEINCHGGIVSVNRVLQ-LVLRYGARLAEPGEFTKR 120 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NG+IDL +AE++ DLI ++T+ +++ M G+LS L L + +E ++ Sbjct: 121 AFLNGRIDLSQAEAVMDLIRAKTDRAMNVALGQMDGKLSRLITSLRQALLETLAQVEVNI 180 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D+ E +DV+ + +L +++ +I + G+I+R G VILG N GKSSL Sbjct: 181 DYPEYDDVEEMTIPVLLEKCGWVREEIIKLLQTSSQGKILREGLSTVILGRPNVGKSSLL 240 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N+L +++ AIVTDI GTTRD++ +++ G +++ DTAGIRET+DIVE+ G++R+ + Sbjct: 241 NSLVQENKAIVTDIAGTTRDIIEEYVNVRGVPLRLVDTAGIRETEDIVERIGVERSREAL 300 Query: 297 ENADLILLL----KEINSKKEISFP--KNIDFIFIGTKSDLYSTYTEEYDHLI------- 343 ++ADLILL+ +E+ + E F + +D+I + K+D+ H + Sbjct: 301 KDADLILLVLNYGEELTEEDERLFETIQAMDYIVVVNKTDIERKIDLNRVHELAGKHRVV 360 Query: 344 --SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKD 399 S EG+ EL I ++ + + + S+ RH+ L Q + +E A + E Sbjct: 361 TTSLLKEEGVIELEEAIAALFFEGQVEANDLTYVSNARHIALLHQAQQVIEDALAAAESG 420 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D+I ++ LG+I G E L++ +FS+FC+GK Sbjct: 421 VPVDMIQIDVTRTWEILGEIIGDTVQESLINQLFSQFCLGK 461 >gi|319936667|ref|ZP_08011080.1| tRNA modification GTPase mnmE [Coprobacillus sp. 29_1] gi|319808224|gb|EFW04789.1| tRNA modification GTPase mnmE [Coprobacillus sp. 29_1] Length = 444 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 149/444 (33%), Positives = 242/444 (54%), Gaps = 12/444 (2%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRY-FFGLDGRILDKG 64 + I A++T L +AISIIRLSG C + + ++ Y + D + +D+ Sbjct: 4 DIIVAIATSRLEAAISIIRLSGKDCIAFVQSFFTGQIKNKESHTITYGYIKDDQKRIDEV 63 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 L+ ++ +FTGE+ E + HGG+ + +L L R+A GEFS+RAF NG+ID Sbjct: 64 LVNIYRGHRTFTGEEMVEINCHGGVFITQKVLN-LCLKKGARMAEHGEFSKRAFLNGRID 122 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE+++DLI+++ + L+++G+ G +S + L I + IE ++D+ E EDV Sbjct: 123 LSQAEAISDLITAKNDYATELALKGIQGNISHFIEDLREDLIKIITQIEVNIDYPEYEDV 182 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + ++ +L LK ++ I + ++++G VI+G N GKSSL NAL +D Sbjct: 183 EELTADSLLPKSQLLKEKMNHIIESSQNVHLLKDGISTVIIGKPNVGKSSLLNALLNEDK 242 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIVTDI GTTRD++ + L+ ++ + DTAGIRET+DIVE G+ ++ + ADL+LL Sbjct: 243 AIVTDIAGTTRDIVEGTIRLDNIILNMIDTAGIRETNDIVENIGVNKSKELIHKADLVLL 302 Query: 305 LKEINSK--KE----ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKI 358 + + +S+ KE I ++ + I + K D Y E D + S +E LIN+I Sbjct: 303 VLDSSSELTKEDYELIELSQDTNRIIVMNKKDQGIKY--ELDGIFISAKDNEIESLINEI 360 Query: 359 KSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDIIAENLRLASVSL 416 K + K I ++ R + L + + LE A E + D+I +L + +L Sbjct: 361 KKMFELGKITAGQEDILANARQIQLLEKARQSLENAIEAMENNVPTDLIVTDLYESWENL 420 Query: 417 GKITGCVDVEQLLDIIFSKFCIGK 440 +I G E LLD +F +FCIGK Sbjct: 421 KEILGERAKEDLLDELFKRFCIGK 444 >gi|319957038|ref|YP_004168301.1| tRNA modification GTPase trme [Nitratifractor salsuginis DSM 16511] gi|319419442|gb|ADV46552.1| tRNA modification GTPase trmE [Nitratifractor salsuginis DSM 16511] Length = 446 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 141/447 (31%), Positives = 240/447 (53%), Gaps = 15/447 (3%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A++T ++ISIIRLSGP + I K PR A L F +G ++D+G+ Sbjct: 3 DTIAAIATAHGVASISIIRLSGPQSLDIARKIAPKATFTPRYAQLCDLFDAEGVLIDRGI 62 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 ++ F +P S+TGE+ EF VHGG+ V ILE A+ RLA PGEFS+RAF NGKIDL Sbjct: 63 VLRFQAPHSYTGEEIVEFQVHGGLVVAEQILES-ARRHGARLAEPGEFSKRAFLNGKIDL 121 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 EAE++A +I +++ R+ + GEL + +KL + E +D++EE D+ Sbjct: 122 SEAEAIAKMIEAKSADAARILARQIKGELGRFVEESREKLLRALAHSEVMIDYAEE-DIP 180 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 + + ++ LK+ + + + + G+++ I+G N GKSSL NA+ + A Sbjct: 181 EDLIRGLEAQLVELKDSLERIVQSSRRRRGLIEGFRVAIVGKPNVGKSSLLNAMLSYERA 240 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IV+D+ GTTRD + + + ++V+I DTAGIR+T+D VE+ G++R+ +E A++++ L Sbjct: 241 IVSDVAGTTRDTIEEQIRIGSHIVRIIDTAGIRQTEDRVERIGVERSLASLEEAEVVIAL 300 Query: 306 KEINSKKE---------ISFPKNIDFIFIGTKSDLYSTYTE---EYDHLISSFTGEGLEE 353 + + E I ++ + I K+DL E E H + Sbjct: 301 FDASRPWEREDERILERIEALRDKELIVALNKTDLPRRLEEPRLEKFHPLEISARRDFSH 360 Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLAS 413 L+ +++ L + + S +R + + + R + A K L+ + +++ A Sbjct: 361 LMEELQRRLDALGQDEELMLAS-ERQIEAVEECARQIREAVAPLKQGELEFFSYHIQEAV 419 Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++ +IT + EQ+LD +F +FC+GK Sbjct: 420 QAISRITRPYESEQILDRMFGEFCLGK 446 >gi|167755185|ref|ZP_02427312.1| hypothetical protein CLORAM_00690 [Clostridium ramosum DSM 1402] gi|237734935|ref|ZP_04565416.1| tRNA modification GTPase mnmE [Mollicutes bacterium D7] gi|167705235|gb|EDS19814.1| hypothetical protein CLORAM_00690 [Clostridium ramosum DSM 1402] gi|229381711|gb|EEO31802.1| tRNA modification GTPase mnmE [Coprobacillus sp. D7] Length = 444 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 151/457 (33%), Positives = 251/457 (54%), Gaps = 36/457 (7%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQ-VCEFICKKKKPFPRKASLRYFFGLD-GRILD 62 ++ I A++T L +AIS+IR+SGP C V +F K P ++ Y + +D G+ +D Sbjct: 3 EDIIVAIATSRLEAAISMIRVSGPDCIAFVQKFFTGKIIEKPSH-TINYGYIIDDGKRID 61 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 + L+ ++ +FTGE+ E + HGG+ + + +LE K R+A GEFS+RAF NG+ Sbjct: 62 EVLVNIYRGTRTFTGEEMVEINCHGGVYITSRVLEVCIK-NGARMAERGEFSKRAFLNGR 120 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 IDL +AE+++D+I+++ L+++G+SG +S + L I + IE ++D+ E + Sbjct: 121 IDLSQAEAISDIITAKNSYATDLALKGISGSISGFIEDLKEDLIQIITQIEVNIDYPEYD 180 Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 DV+ ++ +L L ++ + K ++++ G K VI+G N GKSSL NAL ++ Sbjct: 181 DVEELTASSLLPRSANLLTKMNKILDDSKNIKLVKEGIKTVIIGRPNVGKSSLLNALLRE 240 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 D AIVT+I GTTRD++ + ++G ++ + DTAGIRETDDI+E G++++ + ADL+ Sbjct: 241 DKAIVTNIAGTTRDIVEGSISIDGVVLNMIDTAGIRETDDIIESMGVEKSKELIHQADLV 300 Query: 303 LLLKEINSKKEIS--------FPKNIDFIFI------GTKSDLYSTYTEEYDHLISSFTG 348 LL+ I+ + +S ++ I + GTK DL D+ IS+ T Sbjct: 301 LLV--IDGSQSLSSEDMQLLELTEDATRIIVLNKADQGTKVDLDGIVISAKDNQISTLTE 358 Query: 349 E-----GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLD 403 E L ++I+ IL+N + + +R L Q V +EM D Sbjct: 359 EIKKMFELGKIIDNNDHILTNARQTMLL-----QRASQALKQAVEAMEMM------IPTD 407 Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +I +L +L +I G E LLD +F +FCIGK Sbjct: 408 LIVTDLYECWNNLKEILGEKAKEDLLDELFKRFCIGK 444 >gi|299143471|ref|ZP_07036551.1| tRNA modification GTPase TrmE [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298517956|gb|EFI41695.1| tRNA modification GTPase TrmE [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 458 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 157/466 (33%), Positives = 254/466 (54%), Gaps = 42/466 (9%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL---DGRI 60 +TI A+ST + I I+R+SG + ++ F+ K + +G + ++ Sbjct: 4 DTISAISTATGEAGIGIVRMSGENSIEIANSIFVPMGSKTLIESDNRTMVYGHIYDNDKL 63 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+ L++ P ++T E+ E + HGGI V IL+ L RLA PGEF++RAF N Sbjct: 64 IDEVLIVKMLMPHTYTRENVVEIYCHGGIISVRRILD-LTLDRGARLAEPGEFTKRAFLN 122 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G++DL +AE++ D+I S++++ +S+ + G LS +++ + + I A++DF E Sbjct: 123 GRLDLAQAEAVIDIIKSKSDISYNMSLRQLEGSLSGRIADIRERVMKMTALIVANIDFPE 182 Query: 181 EEDVQ-NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 +E V+ +SS + D + + ++ I G+++R+G VILG N GKSSL N L Sbjct: 183 DEIVEATYSS--LREDAVHVVESLNELIKNSNRGKLLRDGINTVILGKPNVGKSSLLNGL 240 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 + + AIVTDIPGTTRDV+T ++L+G L+KI+DTAGIR+TDD VE+ G+ ++ + Sbjct: 241 LRDERAIVTDIPGTTRDVITDFVNLDGILLKITDTAGIRDTDDTVERIGVDLAKKSIDGS 300 Query: 300 DLIL---------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLIS 344 DLI+ +++ I +KK I D +K D+ ++ D+L Sbjct: 301 DLIIAIFDTSRPFDNDDYEIIRLIGNKKSIILLNKSDLDKKVSKDDI-EDLVKDRDYLDI 359 Query: 345 SFTGEG----LEELINKIKSILSNKFKK----LPFSIPSHKRHLYHLSQTVRYLEMASLN 396 S GEG +EE KIK + + K L + H R L ++++Y+ LN Sbjct: 360 SVVGEGEILRIEE---KIKEMFFDGEVKENSTLYVNNLRHIRALKAAKESMKYV----LN 412 Query: 397 --EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E + LD++ NL SLG+ITG E +LD +FS+FCIGK Sbjct: 413 DIENEMFLDLLEVNLEDVLSSLGEITGETSTEDVLDKVFSEFCIGK 458 >gi|291571683|dbj|BAI93955.1| tRNA modification GTPase [Arthrospira platensis NIES-39] Length = 469 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 155/477 (32%), Positives = 250/477 (52%), Gaps = 48/477 (10%) Query: 1 MNHEKETIFAVSTGALPS--AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-- 56 ++ + ETI A++T +P +I I+R+SG + + + K P +S R +G Sbjct: 4 ISTKSETIAAIATAIVPQQGSIGIVRMSGAEAVAIAKTLFKAPGNQP-WSSHRILYGYIH 62 Query: 57 ---DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEF 113 +++D+ LL++ +P S+T ED EFH HGGI V +L+ L RLA PGEF Sbjct: 63 HPHTQQLVDEALLLLMLAPRSYTREDVVEFHCHGGIIPVQQVLQ-LCLQAGARLATPGEF 121 Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSF-- 171 + RAF NG++DL +AES+A+L+ +++ ++ G+ G+L+ D + H+RS Sbjct: 122 TLRAFLNGRLDLTQAESVAELVGAQSPQAASAALAGLRGKLA-------DPIHHLRSLCL 174 Query: 172 -----IEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILG 226 IEA +DF EED+ + E+++ + + ++ + GE++R G K+ I+G Sbjct: 175 DILAEIEARVDF--EEDLPPLNESEIIHQLQEVLQQLTDILDTADRGELLRTGLKVAIVG 232 Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEK 286 N GKSSL NA ++ D AIVTD+PGTTRDV+ L + G V++ DTAGIR++DD VE+ Sbjct: 233 RPNVGKSSLLNAWSRSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRKSDDKVEQ 292 Query: 287 EGIKRTFLEVENADLILLLKE-----INSKKEI-SFPKNIDFIFIGTKSD-LYSTYTEEY 339 G++R+ + ++ADL+L + + EI KN I + KSD L S E Sbjct: 293 IGVERSQIAAQSADLVLFTLDCEKGWTEGENEIYQQVKNRPIIVVMNKSDRLSSAQLENL 352 Query: 340 DHLI--------------SSFTGEGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLS 384 I ++ +G+ +L I ++ + + ++R L+ Sbjct: 353 RQAIINQLDIKPSLIIATAATLNQGITDLETSILNAVHTENLQSANLEFAINQRQAAALT 412 Query: 385 QTVRYLEMASLNEKD-CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + LE D D +LR A +LG++TG E +LD IFS+FCIGK Sbjct: 413 RAKIALEQVENTIGDRLPFDFWTIDLRGAIHALGEVTGEEVTESVLDRIFSRFCIGK 469 >gi|148266438|ref|YP_001233144.1| tRNA modification GTPase TrmE [Geobacter uraniireducens Rf4] gi|205829152|sp|A5G9V3|MNME_GEOUR RecName: Full=tRNA modification GTPase mnmE gi|146399938|gb|ABQ28571.1| tRNA modification GTPase trmE [Geobacter uraniireducens Rf4] Length = 455 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 153/459 (33%), Positives = 248/459 (54%), Gaps = 30/459 (6%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG-----LDGR 59 ++TI A+ST + IIR+SG + + I K+ + + S R+++G + Sbjct: 4 QDTIAAISTPTGEGGVGIIRVSGRHVLSIADAIFKRNRDGGLQ-SHRFYYGAIIDPVSAD 62 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 LD+ +++ P S+T ED E HGG VV IL+ L RLA PGEF++RAF Sbjct: 63 CLDEVMVVFMKGPHSYTREDVLEIQCHGGYLVVQRILD-LVLQQGTRLAGPGEFTKRAFL 121 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NG+IDL++AE++ D+I S+TE L+ G LS + D + + IEA +DF Sbjct: 122 NGRIDLVQAEAIIDVIRSKTEKSLALAQHQREGLLSQRIARVKDGIVSSLALIEAFIDFP 181 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 EE D+ ++V + ++ + ++ G+++R+G +VI G N GKSSL N L Sbjct: 182 EE-DIDVLGIQQVGAHVDCSLTELETLLAGFNEGKVLRDGVSVVIAGKPNVGKSSLLNTL 240 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 ++ AIVT +PGTTRD++ + ++G VK+ DTAGIRE+DD VE+EGIK + ++ +A Sbjct: 241 LREKRAIVTSVPGTTRDLIEEVVTIKGLPVKLLDTAGIRESDDRVEREGIKLSLDKIPSA 300 Query: 300 DLILLL--------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL-------IS 344 DL+L + E + ++ P N FI + KSD+ ++ + L +S Sbjct: 301 DLVLFIIDSSLPFSSEDQAILDVLAPCN--FIVVMNKSDICRSF--DMPQLPDVPIIAVS 356 Query: 345 SFTGEGLEELINKI--KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCG 401 + TG+G++ L + I I ++ + S RH L ++ L N Sbjct: 357 TLTGDGIDALQDAIFEAFIHNHAVDSREYVAVSQARHRDALQKSRDALLRFRGNLVAGME 416 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LD++A +LR A ++G++TG + +LD+IF +FCIGK Sbjct: 417 LDLLAIDLRDALSAIGEVTGETTADDVLDLIFQRFCIGK 455 >gi|228942633|ref|ZP_04105165.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228975563|ref|ZP_04136115.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228982199|ref|ZP_04142488.1| tRNA modification GTPase mnmE [Bacillus thuringiensis Bt407] gi|228777551|gb|EEM25829.1| tRNA modification GTPase mnmE [Bacillus thuringiensis Bt407] gi|228784173|gb|EEM32200.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817059|gb|EEM63152.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326943282|gb|AEA19178.1| tRNA modification GTPase TrmE [Bacillus thuringiensis serovar chinensis CT-43] Length = 458 Score = 217 bits (553), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 148/459 (32%), Positives = 255/459 (55%), Gaps = 24/459 (5%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----LD-G 58 E +TI A+ST AI+I+R+SG + + I K K +S +G LD Sbjct: 2 EFDTIAAISTALGEGAIAIVRVSGDDAVEKVDRIFKGK-DLTEVSSHTIHYGHIVDLDTN 60 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 +++++ ++ + +P +FT E+ E + HGG+ VN +L+ L +RLA PGEF++RAF Sbjct: 61 QVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAF 119 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG+IDL +AE++ DLI ++T+ +++ M G LS L G+ ++ + +E ++D+ Sbjct: 120 LNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGRLRQEILETLAHVEVNIDY 179 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E +DV+ + ++ ++++I + K G+I+R G I+G N GKSSL N+ Sbjct: 180 PEYDDVEEMTHNILIEKATHVRSEIEKILETSKQGKILREGIATAIIGRPNVGKSSLLNS 239 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L ++ AIVTDI GTTRDV+ +++ G +K+ DTAGIRET+D+VE+ G++R+ + Sbjct: 240 LVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSKEMMSQ 299 Query: 299 ADLILLL----KEINSKKEISFP--KNIDFIFIGTKSDLYS-------TYTEEYDHLISS 345 ADL+L++ + + ++ E F + DFI I K+DL T E + +I++ Sbjct: 300 ADLVLVVVNYSEALTNEDEDLFHAVQGKDFIVIVNKTDLPQAIDMERVTELAEGNRVITT 359 Query: 346 --FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCG 401 +G++EL I + + S+ RH+ L+Q + + + E Sbjct: 360 SLIEEQGIDELEKAIADLFFEGTIDSTDMTYVSNARHIGLLTQAGQTIGDAIEAIENGVP 419 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+ITG E L+D +FS+FC+GK Sbjct: 420 IDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458 >gi|332360300|gb|EGJ38113.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis SK355] Length = 457 Score = 217 bits (553), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 147/461 (31%), Positives = 263/461 (57%), Gaps = 26/461 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLDGR 59 + E +TI A+ST AI I+RLSG F + + I K K ++ +L Y +D + Sbjct: 2 ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKNLSEVESHTLNYGHIVDPQ 61 Query: 60 ---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 ILD+ +L SP++FT ED E + HGGIAV N IL+ LA R+A PGEF++R Sbjct: 62 NQEILDEVMLGAMRSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARMAEPGEFTKR 120 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NG++DL +AE++ D+I ++T+ +++ + G LS+L ++ + + +E ++ Sbjct: 121 AFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQEILNTLAQVEVNI 180 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D+ E +DV+ +++ + + +S+ ++ + G+I+R G I+G N GKSSL Sbjct: 181 DYPEYDDVEEMTTQLMREKTAEFETLLSNLLNTARRGKILREGISTAIIGRPNVGKSSLL 240 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N L ++D AIVTDI GTTRDV+ ++++G +K+ DTAGIRETDD+VE+ G++R+ + Sbjct: 241 NNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEQIGVERSKKAL 300 Query: 297 ENADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTYTEEYDHL------ 342 + ADL+LL+ +N+ ++++ ++ + I + K+DL E D L Sbjct: 301 QEADLVLLV--LNASEQLTDQDRQLLEISQDSNRIVLLNKTDLEEKI--ELDQLPTDVIK 356 Query: 343 ISSFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKD 399 IS + ++++ +I ++ + + + S+ RH+ + + + L+ + E Sbjct: 357 ISVLHNQNIDKIEERINHLIFENAGIVEQDATYLSNARHISLIEKALESLQAVNQGLEMG 416 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ ++ LG+ITG ++L+ +FS+FC+GK Sbjct: 417 MPVDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 457 >gi|224012297|ref|XP_002294801.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|224013676|ref|XP_002296502.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220968854|gb|EED87198.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220969240|gb|EED87581.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 472 Score = 217 bits (553), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 149/437 (34%), Positives = 230/437 (52%), Gaps = 58/437 (13%) Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELA-----KMP-NLRLANPGEFS 114 LD L++ F P SFTGED E H HG AVV+G+L L+ +P LR A+PGEF+ Sbjct: 37 LDSALVLTFEGPNSFTGEDIVELHCHGSRAVVHGVLSALSSLSSRAIPLQLRPADPGEFT 96 Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174 +RA+ +GK+ L+E E+LADLI ++T +QR+ +++ G LS LYG W ++L + EA Sbjct: 97 QRAYAHGKLGLVEVEALADLIVADTSLQRKQALQQFDGRLSRLYGGWREELIKGLAHAEA 156 Query: 175 DLDFSEEEDVQ---NFSSKEVLND------------ILFLKNDISSHISQGKLGEIIRNG 219 +DF ++E + F ND I L+ ++ H++ GE++R+G Sbjct: 157 VIDFGDDEALDAHDEFDDGLNANDGGMSIWGTIAPRIRSLRQAMNRHLADASRGELLRDG 216 Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 +I I+G NAGKSSL N LA +D AIV+ PGTTRDV+ + LDL G + DTAG+RE Sbjct: 217 LRIAIVGRPNAGKSSLLNLLAGRDAAIVSSSPGTTRDVVEVMLDLGGVRCTLLDTAGVRE 276 Query: 280 TD----DIVEKEGIKRTFLE----------VENADLILLLKEINSKKEISFPKNIDFIFI 325 + +E EG+KR V+ DL L+ ++ + + + Sbjct: 277 EKEEGVNEIEVEGMKRARRAARDAHIIVGVVDATDLSRGLEAVDELIRVESESDESSSLL 336 Query: 326 GTKSDLY-------------STYTEEYDHL----ISSFTGEGLEELINKIKS-----ILS 363 + LY S ++E + IS T EG+++ ++ + + Sbjct: 337 NRDNVLYVLNKLDLVEGNENSINSKEQSNSPKFGISCTTSEGVDDFLSSLTQQALSLVSG 396 Query: 364 NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCV 423 ++ + + H+RH+ S + E S + LD+ AE LRLAS LG++TG + Sbjct: 397 DRDEGAVITRARHRRHVEAASDALERFEELS-GQGYMALDMAAEELRLASSELGRVTGAI 455 Query: 424 DVEQLLDIIFSKFCIGK 440 DVE +LD++F+ FCIGK Sbjct: 456 DVEDVLDVLFADFCIGK 472 >gi|156843181|ref|XP_001644659.1| hypothetical protein Kpol_1056p1 [Vanderwaltozyma polyspora DSM 70294] gi|156115307|gb|EDO16801.1| hypothetical protein Kpol_1056p1 [Vanderwaltozyma polyspora DSM 70294] Length = 505 Score = 217 bits (553), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 159/482 (32%), Positives = 265/482 (54%), Gaps = 50/482 (10%) Query: 7 TIFAVSTG-ALPSAISIIRLSG-PSCFQVCEFICKKKKPFPRKASLRYFFGLDG-----R 59 TI+A++T SAI+++R+SG S + + K +P PR A LR + ++ Sbjct: 26 TIYALATPPGRKSAIAVVRISGEQSKYIYRKLTDAKTEPKPRSALLRNLYNIEKYKDKKT 85 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN------LRLANPGEF 113 +LD L+ F SP+SFTGEDS E H+HGG A+ N +++ + + N +R A PGEF Sbjct: 86 LLDNALIFFFQSPKSFTGEDSLELHLHGGKAICNAVIKTIETLHNRDEGIEIRQAQPGEF 145 Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173 S+RAF+NGK DL E E + ++I SETE QR ++ G+ ++ W +K+ + + Sbjct: 146 SQRAFQNGKYDLTEIEGIKEIIDSETESQRLSALSSFMGQNKKMFNSWREKIVENIAQLT 205 Query: 174 ADLDFSEEEDVQNFSS--KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAG 231 A +DF E+ D+++ + +I+ L+ D+ + + + + I+++G ++ ++G N G Sbjct: 206 AIIDFGEDIDIEDTEKLFNRIEANIIGLERDVHTFLKRVEKANILQDGIRMTLIGVPNTG 265 Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIK 290 KSSL N + +++IV+DIPGTTRD + +++ GY V ISDTAGIR +T++ +E GI+ Sbjct: 266 KSSLINKITSDEISIVSDIPGTTRDSIDAIININGYKVIISDTAGIRKDTNEKIEVLGIE 325 Query: 291 RTFLEVENADLILLLKEINSKKEISFPKNIDFI-----------FIGTKSDLYST----- 334 R+ +D+ L+L + N+K +S + ID + I K+DL Sbjct: 326 RSKKMASRSDICLVLIDPNNKPLLS-NEIIDLLQAPEIKRKHLRIIVNKTDLIKNENILE 384 Query: 335 -----YTEEYD-----HLISSFTGEGLEELINKIKSI---LSNKFKKLPFSIPSHKRHLY 381 +Y+ + IS T G+E+LI ++ LSNK + I S +R + Sbjct: 385 NLQEEIVTKYNLKIPINFISCATESGIEKLIYELTDTFDDLSNKSEDGNPIIVS-ERVVE 443 Query: 382 HLSQTVRYLEMASLNEKDCGLDII--AENLRLASVSLGKITG-CVDVEQLLDIIFSKFCI 438 L V Y N K+ D++ E+L+ A+ +GKITG V V+++L +F+ FC+ Sbjct: 444 ILKNDVVYGINEFKNFKNYNNDVVMATESLKYAADGIGKITGDTVGVDEVLGSVFANFCV 503 Query: 439 GK 440 GK Sbjct: 504 GK 505 >gi|45656065|ref|YP_000151.1| tRNA modification GTPase TrmE [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|73919887|sp|Q72VY6|MNME_LEPIC RecName: Full=tRNA modification GTPase mnmE gi|45599298|gb|AAS68788.1| tRNA modification GTPase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 456 Score = 217 bits (553), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 157/459 (34%), Positives = 241/459 (52%), Gaps = 29/459 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF-------PRKASLRYFFGLDG 58 +TI AVST + AI IIR+SGP + K F PR A ++ F + Sbjct: 3 DTIAAVSTSSGAGAIGIIRMSGPEALTISSSFLFSKNKFLSPSEILPRTA-IQCVFQIGD 61 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 R +D+ L F SP S+TGED EFH HG ++ L+ + + R A GEFSRRAF Sbjct: 62 RKIDQILFFYFKSPNSYTGEDLCEFHFHGNPILLREALDAIFR-AGARPAKQGEFSRRAF 120 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 N K+DL E E++ LIS+ + + L+ + + GE++ +L +++ EA++DF Sbjct: 121 LNEKLDLTEVEAIGRLISARSRFELELAQKNVFGEVTRFTSNLRSQLISLKAECEAEIDF 180 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 S E D+ S +E I +K+ + IS+ E + ++IV+ G N GKSSL N Sbjct: 181 STE-DLTYESLEERKTRIENVKSLCQTLISKSSSAEKLIQQFRIVLYGEPNTGKSSLMNV 239 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L K+ +I+++IPGTTRD ++ ++ LEG V++ DTAG+RET D +EK GI+R+ E ++ Sbjct: 240 LLGKERSIISEIPGTTRDYISEEIFLEGIPVRLVDTAGVRETTDHIEKLGIERSEKEFQS 299 Query: 299 ADLILLLKEINSKKE----------------ISFPKNIDFIFIGTKSDLYSTYTEEYDHL 342 AD+ L L ++ SKKE I ID + +L+S + Sbjct: 300 ADVRLFLVDV-SKKENWKEFINKSRERLEGSILIANKIDILNSSWDRNLFSDVKDLIVLE 358 Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCG 401 IS T EG+ L++ IK + K + +R YH VR L+ L ++ Sbjct: 359 ISCKTKEGISNLLDAIKE-RTGKLGHSEDYVLLEERQRYHFETIVRCLDKTLHLLKEGAP 417 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +I + + A +G++ G VD E++L IFSKFC+GK Sbjct: 418 AEIYIQEINYALAEIGEVNGKVDTEEVLGRIFSKFCVGK 456 >gi|327460276|gb|EGF06613.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis SK1057] Length = 457 Score = 217 bits (553), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 147/459 (32%), Positives = 258/459 (56%), Gaps = 22/459 (4%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLDGR 59 + E +TI A+ST AI I+RLSG F + + I K K ++ +L Y +D + Sbjct: 2 ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKNLSKVESHTLNYGHIVDPQ 61 Query: 60 ---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 ILD+ ++ SP++FT ED E + HGGIAV N IL+ LA R+A PGEF++R Sbjct: 62 NQEILDEVMVGAMRSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARMAEPGEFTKR 120 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NG++DL +AE++ D+I ++T+ +++ + G LS L ++ + + +E ++ Sbjct: 121 AFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLSDLINNTRQEILNTLAQVEVNI 180 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D+ E +DV+ +++ + + + +S+ + + G+I+R G I+G N GKSSL Sbjct: 181 DYPEYDDVEEMTTQLMREKTVEFEALLSNLLDTARRGKILREGISTAIIGRPNVGKSSLL 240 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N L ++D AIVTDI GTTRDV+ ++++G +K+ DTAGIRETDD+VE+ G++R+ + Sbjct: 241 NNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEQIGVERSKKAL 300 Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------IS 344 + ADL+LL+ N ++ + K+ + I + K+DL E D L IS Sbjct: 301 QEADLVLLVLNANEPLTDQDRQLLEISKDSNRIILLNKTDLEEKI--ELDQLPTDVIKIS 358 Query: 345 SFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCG 401 + ++++ +I + + + + S+ RH+ + + + L+ + E Sbjct: 359 VLHNQNIDKIEERINHLFFENAGIVEQDATYLSNARHISLIEKALESLQAVNQGLEVGMP 418 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ ++ LG+ITG ++L+ +FS+FC+GK Sbjct: 419 VDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 457 >gi|115314929|ref|YP_763652.1| tRNA modification GTPase TrmE [Francisella tularensis subsp. holarctica OSU18] gi|122325057|sp|Q0BLL9|MNME_FRATO RecName: Full=tRNA modification GTPase mnmE gi|115129828|gb|ABI83015.1| GTP-binding protein [Francisella tularensis subsp. holarctica OSU18] Length = 450 Score = 217 bits (553), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 157/465 (33%), Positives = 254/465 (54%), Gaps = 43/465 (9%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62 + K+TI A++T I IIR+SG ++ E + KK+ PR A+ + D I+D Sbjct: 2 YTKDTIVAIATPQGNGGIGIIRISGIDALEIAEKLTKKQLK-PRYATFCNVYN-DNEIID 59 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 G++I F +P S+TGED E HG ++N I++ A R+A GEF+ RAF N K Sbjct: 60 HGIVIFFKAPLSYTGEDVVEIQAHGNPFILNLIIKA-ALNCGARIAKAGEFTERAFLNNK 118 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 +DL +AE++AD+I++ +E+ + + + + G+ S ++KL ++R ++EA +DF EEE Sbjct: 119 LDLAQAEAVADIINASSEIAAKSAAKSLQGDFSKEINNLLEKLIYLRMYVEASIDFPEEE 178 Query: 183 -----DVQNFSS-KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D + SS +E+ IL +KN K G I+ G ++++G NAGKSSL Sbjct: 179 INFLEDQKIHSSLEEIYKVILAIKNSC-------KQGVILAEGITLILVGKPNAGKSSLL 231 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 NALA K+ AIVT I GTTRD++ + + G + I DTAG+R +DDI+E EGIKR ++ Sbjct: 232 NALAGKESAIVTSIAGTTRDIVKEHIQINGVPMHIIDTAGLRNSDDIIESEGIKRAIKKI 291 Query: 297 ENADLILLLKEINSKKEISF--------------PKNIDFIFIGTKSDLYSTYTEEY-DH 341 + AD +L + + + ++ F PK+ID ++ K DL + +H Sbjct: 292 QEADQVLFVTDDYTNSQVKFSDIKEIIPEFYDQIPKDIDITYVHNKIDLLKEVPHNHANH 351 Query: 342 L-ISSFTGEGL----EELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMASL 395 + IS+ G+ E ++NK+ N+ SI + +RH+ ++ ++++A Sbjct: 352 IYISAENNIGIDKLKEHILNKVGYTNQNE------SIYTARERHVTAINNAFEHIKLAKE 405 Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + +++AE L + L ITG + LL IFS FCIGK Sbjct: 406 QLELGNGELLAEELLIVQEYLNSITGEFSSDDLLGEIFSSFCIGK 450 >gi|284053846|ref|ZP_06384056.1| tRNA modification GTPase TrmE [Arthrospira platensis str. Paraca] Length = 469 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 155/477 (32%), Positives = 250/477 (52%), Gaps = 48/477 (10%) Query: 1 MNHEKETIFAVSTGALPS--AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-- 56 ++ + ETI A++T +P +I I+R+SG + + + K P +S R +G Sbjct: 4 ISTKSETIAAIATAIVPQQGSIGIVRMSGAEAVAIAKTLFKAPGNQP-WSSHRILYGYIH 62 Query: 57 ---DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEF 113 +++D+ LL++ +P S+T ED EFH HGGI V +L+ L RLA PGEF Sbjct: 63 HPHTQQLVDEALLLLMLAPRSYTREDVVEFHCHGGIIPVQQVLQ-LCLQAGARLATPGEF 121 Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSF-- 171 + RAF NG++DL +AES+A+L+ +++ ++ G+ G+L+ D + H+RS Sbjct: 122 TLRAFLNGRLDLTQAESVAELVGAQSPQAASAALAGLRGKLA-------DPIHHLRSLCL 174 Query: 172 -----IEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILG 226 IEA +DF EED+ + E+++ + + ++ + GE++R G K+ I+G Sbjct: 175 DILAEIEARVDF--EEDLPPLNESEIIHQLQEVLQQLTDILDTADRGELLRTGLKVAIVG 232 Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEK 286 N GKSSL NA ++ D AIVTD+PGTTRDV+ L + G V++ DTAGIR++DD VE+ Sbjct: 233 RPNVGKSSLLNAWSRSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRKSDDKVEQ 292 Query: 287 EGIKRTFLEVENADLILLLKE-----INSKKEI-SFPKNIDFIFIGTKSD-LYSTYTEEY 339 G++R+ + ++ADL+L + + EI KN I + KSD L S E Sbjct: 293 IGVERSQIAAQSADLVLFTLDCEKGWTEGENEIYQQVKNRPIIVVMNKSDRLSSAQLENL 352 Query: 340 DHLI--------------SSFTGEGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLS 384 I ++ +G+ +L I ++ + + ++R L+ Sbjct: 353 RQAIINKLDIKPSLIIATAATLNQGITDLETSILNAVHTENLQSANLEFAINQRQAAALT 412 Query: 385 QTVRYLEMASLNEKD-CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + LE D D +LR A +LG++TG E +LD IFS+FCIGK Sbjct: 413 RAKIALEQVENTIGDRLPFDFWTIDLRGAIHALGEVTGEEVTESVLDRIFSRFCIGK 469 >gi|325695846|gb|EGD37737.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis SK160] Length = 479 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 147/459 (32%), Positives = 260/459 (56%), Gaps = 22/459 (4%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLDGR 59 + E +TI A+ST AI I+RLSG F + + I K K ++ +L Y +D + Sbjct: 24 ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKNLSKVESHTLNYGHIVDPQ 83 Query: 60 ---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 ILD+ +L SP++FT ED E + HGGIAV N IL+ LA R+A PGEF++R Sbjct: 84 NQEILDEVMLGAMRSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARMAEPGEFTKR 142 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NG++DL +AE++ D+I ++T+ +++ + G LS+L ++ + + +E ++ Sbjct: 143 AFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQEILNTLAQVEVNI 202 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D+ E +DV+ +++ + ++ +S+ ++ + G+I+R G I+G N GKSSL Sbjct: 203 DYPEYDDVEEMTTQLMREKTAEFEDLLSNLLNTARRGKILREGISTAIIGRPNVGKSSLL 262 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N L ++D AIVTDI GTTRDV+ ++++G +K+ DTAGIRETDD+VE+ G++R+ + Sbjct: 263 NNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEQIGVERSKKAL 322 Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------IS 344 + ADL+LL+ + K+ + ++ + I + K+DL E D L IS Sbjct: 323 QEADLVLLVLNASEPLTDQDKQLLEISQDSNRIVLLNKTDLEEKI--ELDQLPTDVIKIS 380 Query: 345 SFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCG 401 + ++++ +I + + + + S+ RH+ + + + L+ + E Sbjct: 381 VLHNQNIDKIEERINQLFFENAGIVEQDATYLSNARHISLIEKALESLQAVNQGLEMGMP 440 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ ++ LG+ITG ++L+ +FS+FC+GK Sbjct: 441 VDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 479 >gi|261206911|ref|ZP_05921600.1| tRNA modification GTPase mnmE [Enterococcus faecium TC 6] gi|289567290|ref|ZP_06447669.1| tRNA modification GTPase TrmE [Enterococcus faecium D344SRF] gi|294616665|ref|ZP_06696436.1| tRNA modification GTPase TrmE [Enterococcus faecium E1636] gi|260078539|gb|EEW66241.1| tRNA modification GTPase mnmE [Enterococcus faecium TC 6] gi|289160909|gb|EFD08830.1| tRNA modification GTPase TrmE [Enterococcus faecium D344SRF] gi|291590485|gb|EFF22223.1| tRNA modification GTPase TrmE [Enterococcus faecium E1636] Length = 465 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 154/469 (32%), Positives = 265/469 (56%), Gaps = 42/469 (8%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC----KKKKPFPRKASLRYFFGLD-- 57 E +TI A+ST AISI+RLSG Q+ + + K+ P ++ Y +D Sbjct: 7 EFDTIAAISTPPGEGAISIVRLSGDQAVQLADKVYQSGNKRLSEVPSH-TIHYGHVVDPK 65 Query: 58 -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 +++D+ ++ V +P++FT ED E + HGGI VVN IL+ L + RLA PGEF++R Sbjct: 66 SNQLVDEVMVSVMRAPKTFTREDVVEINCHGGIVVVNQILQLLLR-EGARLAEPGEFTKR 124 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NG++DL +AE++ DLI ++T+ L++ + G LS+L ++ + +E ++ Sbjct: 125 AFLNGRVDLSQAEAVMDLIRAKTDKAMGLALNQLDGNLSALIRSLRQEILETLAQVEVNI 184 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D+ E +DV+ ++K +L ++ I + ++ K G+++R G I+G N GKSSL Sbjct: 185 DYPEYDDVEELTTKLLLEKAQMIQQRIQALLATSKQGKVLREGLSTAIIGRPNVGKSSLL 244 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N L +++ AIVTDI GTTRDV+ +++ G +K+ DTAGIRET+D+VE+ G++R+ + Sbjct: 245 NHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSRKAL 304 Query: 297 ENADLILLL----KEINSKKE--ISFPKNIDFIFIGTKSDLYSTYTEE-YDHL------- 342 ADLILL+ + + ++ E + + I + K+DL + +E L Sbjct: 305 AEADLILLVLNQSEPLTAEDEQLLEATSGLKRIILLNKTDLPAQLEQEKLKKLIENEPVF 364 Query: 343 -ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT--VRYLEMASLNEK- 398 IS +GL ++++S +S+ F FS + +R ++S T + LE ASL+ + Sbjct: 365 SISVAKNDGL----DRLESAISDLF----FSGETGERDATYVSNTRHIALLEKASLSLEE 416 Query: 399 -----DCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D G+ D++ ++ LG++ G ++L+ +FS+FC+GK Sbjct: 417 VIAGIDAGMPVDLVQIDMTRCWDYLGEVVGDSVQDELITQLFSQFCLGK 465 >gi|327295863|ref|XP_003232626.1| mitochondrial GTPase [Trichophyton rubrum CBS 118892] gi|326464937|gb|EGD90390.1| mitochondrial GTPase [Trichophyton rubrum CBS 118892] Length = 594 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 127/320 (39%), Positives = 187/320 (58%), Gaps = 35/320 (10%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLD-----GRI 60 TI+A+ST +AI+IIR+SGP C + + +C +K P PR A+LR + + Sbjct: 46 TIYALSTAPGRAAIAIIRISGPYCIPIYKALCPNRKLPKPRFAALRTIYEPGKPVSADNV 105 Query: 61 LDKGLLIV-FPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN--------LRLANPG 111 LD G L+ FP+P + TGED E HVHGG AV+ IL ++K + +R A PG Sbjct: 106 LDSGALVFHFPAPNTVTGEDVLELHVHGGPAVIKSILGAISKCASPVDAPSASIRYAEPG 165 Query: 112 EFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSF 171 EF+RRAF N ++DL + E+L + ++++TE QRRL++ G + LS+ Y QW +L + R Sbjct: 166 EFTRRAFLNDRLDLPQIEALGNTLAADTEQQRRLAIRGTNDILSTRYEQWRKQLLYARGE 225 Query: 172 IEADLDFSEE----EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227 +EA +DFSE+ E V +F S V + L + I+ HI GE++R+G K+ +LG Sbjct: 226 LEALIDFSEDQHFDESVDDFISS-VTGQVDSLLHQINLHIKNASKGELLRSGIKVALLGA 284 Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--------- 278 NAGKSSL N + +D AIV+ GTTRD++ + +DL G+L K D AG+R Sbjct: 285 PNAGKSSLLNQIVGRDAAIVSSEAGTTRDIVDVGIDLGGWLCKFGDMAGLRSKLSQSQIA 344 Query: 279 ------ETDDIVEKEGIKRT 292 T +E+EGI+R Sbjct: 345 AQGHVVSTVGKIEEEGIRRA 364 >gi|304385851|ref|ZP_07368195.1| tRNA modification GTPase TrmE [Pediococcus acidilactici DSM 20284] gi|304328355|gb|EFL95577.1| tRNA modification GTPase TrmE [Pediococcus acidilactici DSM 20284] Length = 486 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 148/464 (31%), Positives = 261/464 (56%), Gaps = 33/464 (7%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LDGRI- 60 E +TI A+ST ISIIR+SG + +V I + K + AS +G +D Sbjct: 29 EFDTIAAISTPPGEGGISIIRISGVNALKVASQIYRGKD-LAKVASHTINYGHVVDPATD 87 Query: 61 --LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 +D+ ++ V +P ++T ED E + HGGI N IL+ + + + RLA PGEF+ RAF Sbjct: 88 EEIDEVMVSVMRAPHTYTKEDVVEINCHGGIVATNRILQLILGL-DARLAKPGEFTERAF 146 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG+IDL +AE++ DLI ++T+ +++++ + G LS L + + + +E ++D+ Sbjct: 147 LNGRIDLSQAEAVMDLIRAKTDQSMKVALDQLDGNLSHLIKNLRQDILDVLAQVEVNIDY 206 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E +DV+ +++ + + +K ++ ++ K G+++R+G I+GH N GKSS+ N Sbjct: 207 PEYDDVETMTTRLLKEKAIEVKAKVNQLLATAKQGKVLRDGLATAIIGHPNVGKSSILNH 266 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L +D AIVTD+ GTTRDV+ ++++G +K+ DTAGI ET+D VEK G+ R+ ++ Sbjct: 267 LLHEDKAIVTDVAGTTRDVIEEYVNVQGVPLKLVDTAGIHETEDKVEKIGVDRSRKALQQ 326 Query: 299 ADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDL--------YSTYTEEYDHLIS 344 ADL++L+ + + ++ + N+ I + K+DL Y E + + S Sbjct: 327 ADLVILVLDSSVPLRDEDRQLLDQTANMQRIVVLNKTDLPTKINLNELQKYASEAEIIKS 386 Query: 345 SFTGE-GLEELINKIKSI-----LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398 S G ++L ++I + + N + + ++ RH+ L QTV L+ + L+ Sbjct: 387 SAVAPLGTKDLEDRIAKLFFAGSIENSSNNV---MVTNARHIGLLQQTVTALD-SVLDGI 442 Query: 399 DCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + G+ D++ ++ A LG+ITG ++LLD +FS+FC+GK Sbjct: 443 EAGMPVDLVQIDMTRAWDLLGEITGDSYQDELLDQLFSQFCLGK 486 >gi|295398145|ref|ZP_06808194.1| tRNA modification GTPase TrmE [Aerococcus viridans ATCC 11563] gi|294973664|gb|EFG49442.1| tRNA modification GTPase TrmE [Aerococcus viridans ATCC 11563] Length = 463 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 153/459 (33%), Positives = 252/459 (54%), Gaps = 26/459 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFG-----LDGR 59 +TI A+S+ AI I+RLSG + + + K +K + S +G DG+ Sbjct: 7 DTIAAISSAPGEGAIGIVRLSGDDALAIADKVYKLGQKKLSTQDSHTIHYGHIVDPKDGQ 66 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 +D+ ++ V P++FT ED E + HGGI N +LE L LA PGEF++RAF Sbjct: 67 EIDEVMVSVMREPKTFTREDIVEINTHGGIVATNRVLE-LVLREGATLAEPGEFTKRAFI 125 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NG+IDL +AE++ DLI ++T+ L+++ + G+LS+L + + + +E ++D+ Sbjct: 126 NGRIDLTQAEAVMDLIRAKTDRSMDLAVKQLDGKLSNLIENLRQDILNTLAQVEVNIDYP 185 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 E +DV+ + K + +K+ I +S K G+I+R+G I+G N GKSSL NAL Sbjct: 186 EYDDVEEMTLKLLGEKTTIIKDRIDGLLSTAKQGKILRDGISTAIVGRPNVGKSSLLNAL 245 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 +++ AIVTDI GTTRD + +++ G +K+ DTAGIR+T+D+VE+ G++R+ + A Sbjct: 246 LREEKAIVTDIEGTTRDTVEEYINIRGVPLKLVDTAGIRDTEDVVERIGVERSKKALMEA 305 Query: 300 DLILLLKE------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEY-------DHLISS- 345 +L+LLL ++ +S ++ I I K DL S +E D +I++ Sbjct: 306 ELVLLLLNQSEALTAGDRELLSLTQDHKRIIIMNKIDLPSQLLKESLLEWVEEDEIIATS 365 Query: 346 -FTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL- 402 T EG++ L KI S + + + S+ RH+ L + + L+ N D G+ Sbjct: 366 MMTQEGIDALEEKIADYFFSGQSGEKDATYVSNARHIDLLQKASQSLDEVR-NGIDMGMP 424 Query: 403 -DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D+I + A LG+I G ++LL +FS+FC+GK Sbjct: 425 VDLIQIDFTRAWEILGEIIGENAPDELLTQLFSQFCLGK 463 >gi|282881766|ref|ZP_06290424.1| tRNA modification GTPase TrmE [Peptoniphilus lacrimalis 315-B] gi|281298376|gb|EFA90814.1| tRNA modification GTPase TrmE [Peptoniphilus lacrimalis 315-B] Length = 459 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 157/459 (34%), Positives = 262/459 (57%), Gaps = 28/459 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKAS--LRYFFGL---DGRI 60 +TI A+ST + I+I+R SG + ++ + I K K K S ++ +G + +I Sbjct: 5 DTIAAISTAVGEAGIAIVRTSGDNSVEIVDKIFKAKSKKKLKDSENRKFIYGHIYDNDKI 64 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+ L + P S++GE+ E H HGGI V IL L RLA GEF++R F N Sbjct: 65 IDEVLAVKMLGPHSYSGENIVEIHCHGGIVAVRRILN-LLLANGARLAQKGEFTKRGFLN 123 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G+IDL +AE++ DLI ++TE +SM+ + G +S + L +++ I A++DF E Sbjct: 124 GRIDLSQAEAVIDLIKAKTEDSFDISMKQLEGSISKEVEKIEKNLVGMQALIVANIDFPE 183 Query: 181 EEDVQNFSSKEV--LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 +E V++ + E+ ND + L +I ++ G+++R G +ILG N GKSSL N Sbjct: 184 DE-VEDATYDELKRRNDEITL--NIRKLLNNAGRGKLLREGINTLILGKPNVGKSSLLNG 240 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 + K + AIVTDIPGTTRD + ++L+G L+K++DTAGIR+TDD VEK G+K ++++ Sbjct: 241 MLKYERAIVTDIPGTTRDTIEDYINLDGLLLKVTDTAGIRQTDDEVEKIGVKIARDKIKD 300 Query: 299 ADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEE--------YDHL-I 343 ADL++++ ++ + ++ + +N +FI K DL + ++E D+L + Sbjct: 301 ADLVIVIFDLSRPFNKDDREILDLIQNKKALFIMNKDDLQARVSDEDIKDLLNDRDYLKL 360 Query: 344 SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCG 401 S E ++ + N IK + S + + ++ RH+ L + ++ +E L+ E + Sbjct: 361 SVRNPEEIKLVENAIKDMFFSGEIIQKDQVYVNNIRHIDALKKALKTMEETRLDLENEVF 420 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LD++ NL A + KITG + E +LD +FS+FCIGK Sbjct: 421 LDLVEVNLEEALEEISKITGEITTEDVLDRVFSEFCIGK 459 >gi|229917461|ref|YP_002886107.1| tRNA modification GTPase TrmE [Exiguobacterium sp. AT1b] gi|229468890|gb|ACQ70662.1| tRNA modification GTPase TrmE [Exiguobacterium sp. AT1b] Length = 459 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 148/458 (32%), Positives = 254/458 (55%), Gaps = 22/458 (4%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD----GR 59 E +TI A+ST AI I+RLSG + + K + ++ L G Sbjct: 3 EFDTITAISTPMGEGAIGIVRLSGDLAVETVNNVFSGKDLTTVDSHTIHYGTLKYPDTGE 62 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 I+D+ ++ + +P++FT ED E + HGG+ VN +LE + P++RLA PGEF++RAF Sbjct: 63 IVDEVMVSIMRAPKTFTREDVVEINCHGGVVAVNRVLELILDQPDIRLAEPGEFTKRAFL 122 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NG+IDL +AE++ DLI ++T+ ++M M G LS L + +L + +E ++D+ Sbjct: 123 NGRIDLSQAEAVMDLIRAKTDRAMNVAMAQMEGRLSRLVRELRQQLLETIAAVEVNIDYP 182 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 E D + + V +K + + + G+I+R G I+G N GKSSL N L Sbjct: 183 -EYDAEEMTQAIVEEKAGEVKRVLEQLLETARQGKILREGLATAIIGRPNVGKSSLMNTL 241 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 ++ AIVT+I GTTRD + ++++G +K+ DTAGIRET+DIVE+ G++++ +E A Sbjct: 242 VQETKAIVTEIAGTTRDTIEEYVNVKGVPLKLIDTAGIRETEDIVERIGVEKSRKALEAA 301 Query: 300 DLILLL----KEINSKKEISFP--KNIDFIFIGTKSDLYSTY-TEEYDHLISS----FTG 348 DL+LL+ + + + E F K ++ I I K+DL + + + L + T Sbjct: 302 DLVLLVLNGHEGLTVEDEALFEAVKGMNAIIIINKTDLPQNMDSSKLEKLAAGRPIVATS 361 Query: 349 EGLEELINKIKSILSNKF-----KKLPFSIPSHKRHLYHLSQTVRYLEMASLNE-KDCGL 402 L+E I+ +++ ++N F + + S+ RH+ + +T+ ++ A + + + Sbjct: 362 LLLDEGIDALEAAIANLFFAKGVESQDMTYISNARHIQLIKRTIGQIDEALGSAVMNMPI 421 Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D++ +LR A +LG+I G E L+D +FS+FC+GK Sbjct: 422 DMVQIDLRRAWDTLGEINGDTVQESLIDQLFSQFCLGK 459 >gi|170077787|ref|YP_001734425.1| tRNA modification GTPase TrmE [Synechococcus sp. PCC 7002] gi|205829178|sp|B1XKC3|MNME_SYNP2 RecName: Full=tRNA modification GTPase mnmE gi|169885456|gb|ACA99169.1| tRNA modification GTPase TrmE [Synechococcus sp. PCC 7002] Length = 460 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 156/484 (32%), Positives = 241/484 (49%), Gaps = 77/484 (15%) Query: 6 ETIFAVSTGALPS--AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DG 58 +TI A+++ +P+ +I I+RLSG + + + + + S R +G Sbjct: 5 DTIVAIASAVVPNQGSIGIVRLSGAAALPIARQLFQDPGQQTWE-SHRILYGYVRHPQTQ 63 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 I+D+ LL++ +P SFT ED EFH HGGI V +L+ L RLA PGEF+ RAF Sbjct: 64 TIVDEALLLLMLAPRSFTAEDVVEFHCHGGIIPVQQVLQ-LCLGAGARLATPGEFTLRAF 122 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSS----LYGQWIDKLTHIRSFIEA 174 NG+IDL +AES+A+L+ +++ ++++ G+ G+L+ L GQ +D L + EA Sbjct: 123 LNGRIDLTQAESVAELVGAKSPQSAQVALAGIQGKLAQPIQQLRGQCLDILAEV----EA 178 Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234 +DF E+D+ ++ D+ + ++ + GE++R G K+ I+G N GKSS Sbjct: 179 RIDF--EDDLPPLDEPQIQRDLTQVLEKVAQILQTSDRGELLRTGLKVAIVGRPNVGKSS 236 Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294 L NA ++ D AIVTD+PGTTRDV+ L ++G V++ DTAGIR+T+D VEK G+ R+ Sbjct: 237 LLNAWSRSDRAIVTDLPGTTRDVVESQLVVQGIPVQVLDTAGIRDTEDAVEKIGVARSLA 296 Query: 295 EVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEEL 354 + ADLIL ID T +D E + ++++ + L + Sbjct: 297 ASQQADLILF--------------TIDAAVGWTAAD-----QEIFQRIVATKANQPLILI 337 Query: 355 INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG------------- 401 +NKI I + ++P + + Q V LE A N G Sbjct: 338 LNKI-DIGQPEAIEIPPQVQGVVKTAAAQHQGVDELETAIANLVQAGKVGAADLDFAINQ 396 Query: 402 -------------------------LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKF 436 LD +LR A +LG+ITG E +LD IFS+F Sbjct: 397 RQAAALAQAQQALIQVRETIAQGLPLDFWTIDLRSAIQALGEITGEGVTESVLDRIFSRF 456 Query: 437 CIGK 440 CIGK Sbjct: 457 CIGK 460 >gi|116329464|ref|YP_799184.1| tRNA modification GTPase TrmE [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116329932|ref|YP_799650.1| tRNA modification GTPase TrmE [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|122282295|sp|Q04W28|MNME_LEPBJ RecName: Full=tRNA modification GTPase mnmE gi|122282756|sp|Q04XE4|MNME_LEPBL RecName: Full=tRNA modification GTPase mnmE gi|116122208|gb|ABJ80251.1| tRNA modification GTPase TrmE [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116123621|gb|ABJ74892.1| tRNA modification GTPase TrmE [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 456 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 156/458 (34%), Positives = 242/458 (52%), Gaps = 27/458 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF-------PRKASLRYFFGLDG 58 +TI AVST + P AI IIR+SGP + K F PR A ++ F + Sbjct: 3 DTIAAVSTASGPGAIGIIRMSGPGALSISSSFLFSKNGFLSPSDIQPRIA-IQCVFQIGD 61 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 R +D+ L F +P S+TGED EFH HG ++ L+ + + R A GEFSRRAF Sbjct: 62 RKIDQILFFYFKTPNSYTGEDLCEFHFHGNPILLREALDAIFR-AGARPAKQGEFSRRAF 120 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NGK+DL E++ LIS+ + + L+ + + GE+S L +L +++ EA++DF Sbjct: 121 LNGKLDLTGVEAIGRLISARSRFELELAQKNVFGEVSRLTSNLRSQLISLKAECEAEIDF 180 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 S E D+ S +E I +K + I++ E + +IV+ G N GKSSL N Sbjct: 181 STE-DLTYESLEERKVRIEGVKTFCQTVIAKSNSAEKVIQQLRIVLYGEPNTGKSSLMNV 239 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L KD +I+++IPGTTRD ++ ++ LEG V++ DTAG+RET+D +E+ GI+R+ E ++ Sbjct: 240 LLGKDRSIISEIPGTTRDYISEEILLEGIPVRLVDTAGVRETEDHIERLGIERSEKEFQS 299 Query: 299 ADLILLLKEINSKKE---------------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLI 343 AD+ L L +++ K+E I ID +L+S + I Sbjct: 300 ADIRLFLIDVSKKEEWKKFIAKAKGRLEGSILVANKIDIRDSSWNPNLFSDVKDLIICEI 359 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGL 402 S T EG+ L+++I+ + + + +R YH VR L+ L E+ Sbjct: 360 SCKTKEGIPILLDEIQKKAAT-MGHVEDYVLLEERQRYHFETIVRCLDKTLRLIEEGAPA 418 Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +I + + A +G++ G VD E++L IFSKFCIGK Sbjct: 419 EIYIQEMNYALSEIGEVNGRVDTEEVLGRIFSKFCIGK 456 >gi|270289896|ref|ZP_06196122.1| tRNA modification GTPase TrmE [Pediococcus acidilactici 7_4] gi|270281433|gb|EFA27265.1| tRNA modification GTPase TrmE [Pediococcus acidilactici 7_4] Length = 464 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 148/464 (31%), Positives = 261/464 (56%), Gaps = 33/464 (7%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LDGRI- 60 E +TI A+ST ISIIR+SG + +V I + K + AS +G +D Sbjct: 7 EFDTIAAISTPPGEGGISIIRISGVNALKVASQIYRGKD-LAKVASHTINYGHVVDPATD 65 Query: 61 --LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 +D+ ++ V +P ++T ED E + HGGI N IL+ + + + RLA PGEF+ RAF Sbjct: 66 EEIDEVMVSVMRAPHTYTKEDVVEINCHGGIVATNRILQLILGL-DARLAKPGEFTERAF 124 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG+IDL +AE++ DLI ++T+ +++++ + G LS L + + + +E ++D+ Sbjct: 125 LNGRIDLSQAEAVMDLIRAKTDQSMKVALDQLDGNLSHLIKNLRQDILDVLAQVEVNIDY 184 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E +DV+ +++ + + +K ++ ++ K G+++R+G I+GH N GKSS+ N Sbjct: 185 PEYDDVETMTTRLLKEKAIEVKAKVNQLLATAKQGKVLRDGLATAIIGHPNVGKSSILNH 244 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L +D AIVTD+ GTTRDV+ ++++G +K+ DTAGI ET+D VEK G+ R+ ++ Sbjct: 245 LLHEDKAIVTDVAGTTRDVIEEYVNVQGVPLKLVDTAGIHETEDKVEKIGVDRSRKALQQ 304 Query: 299 ADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDL--------YSTYTEEYDHLIS 344 ADL++L+ + + ++ + N+ I + K+DL Y E + + S Sbjct: 305 ADLVILVLDSSVPLRDEDRQLLDQTANMQRIVVLNKTDLPTKINLNELQKYASEAEIIKS 364 Query: 345 SFTGE-GLEELINKIKSI-----LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398 S G ++L ++I + + N + + ++ RH+ L QTV L+ + L+ Sbjct: 365 SAVAPLGTKDLEDRIAKLFFAGSIENSSNNV---MVTNARHIGLLQQTVTALD-SVLDGI 420 Query: 399 DCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + G+ D++ ++ A LG+ITG ++LLD +FS+FC+GK Sbjct: 421 EAGMPVDLVQIDMTRAWDLLGEITGDSYQDELLDQLFSQFCLGK 464 >gi|253702732|ref|YP_003023921.1| tRNA modification GTPase TrmE [Geobacter sp. M21] gi|251777582|gb|ACT20163.1| tRNA modification GTPase TrmE [Geobacter sp. M21] Length = 455 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 153/460 (33%), Positives = 237/460 (51%), Gaps = 32/460 (6%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DGR 59 ++TI A+ST I I+R+SGP+ Q+ I K K S R+ +G G Sbjct: 4 RDTIAAISTPVGEGGIGIVRISGPASLQIARSIFNAKSNGGLK-SHRFSYGEVVQPGTGD 62 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 ++D+ + + +P S+T ED E HGG VV+ IL L R A PGEF++RAF Sbjct: 63 LVDEAMAVYMKAPNSYTREDVVEIQCHGGTLVVSRILS-LVISQGARPAEPGEFTKRAFL 121 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NG+IDL++AE++ D+ISS T+ L+ G LS + + + +++EA +DF Sbjct: 122 NGRIDLVQAEAVMDVISSRTDASLALAQHQREGLLSRRISTVKEGIVYALAYVEALIDFP 181 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 E+ DV +VL + ++ + I+ G ++R+G +VI G N GKSSL N L Sbjct: 182 ED-DVNVAVETDVLGKVAPALAELDALITGFDEGRVLRDGVSVVIAGKPNVGKSSLLNTL 240 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 K+ AIVT +PGTTRD++ +++ G VK+ DTAGIRE+DD VE+EG++ + + A Sbjct: 241 LKEKRAIVTSVPGTTRDLIEEVVNINGLPVKLLDTAGIRESDDQVEQEGVRLSLDRIPKA 300 Query: 300 DLIL---------------LLKEINSKKEISFPKNIDFIFIGT-KSDLYSTYTEEYDHLI 343 DL+L +L+ + SK I D SD ++ I Sbjct: 301 DLVLFVIDGSSVFGVEDATILQAVGSKSCIVVRNKSDLPLAAELPSDCFAPVVA-----I 355 Query: 344 SSFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDC 400 S+ TGEG+ +L + I + + F S RH L + L+ N E Sbjct: 356 STHTGEGVPQLRDAISNAFMHGHAIDGREFVALSKARHRDALLKARESLQSFVANLESGV 415 Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++++ +LR A ++G++TG + +LD IFS FCIGK Sbjct: 416 NMELLPVDLRDALDAVGEVTGETTADDVLDRIFSSFCIGK 455 >gi|293364063|ref|ZP_06610799.1| tRNA modification GTPase TrmE [Mycoplasma alligatoris A21JP2] gi|292552553|gb|EFF41327.1| tRNA modification GTPase TrmE [Mycoplasma alligatoris A21JP2] Length = 453 Score = 217 bits (552), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 157/456 (34%), Positives = 252/456 (55%), Gaps = 26/456 (5%) Query: 6 ETIFAVSTGA-LPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64 +TI A+S+G+ + ISIIR+SGP + + I K K + + + +LD+ Sbjct: 3 DTIAAISSGSKINQPISIIRISGPDSVNIMKKIFKGKIGEDKTITFGNIVNNNQEVLDEV 62 Query: 65 LLIVFPSPE--------SFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 L++ F + ++ GE+ E + HGGI V N ILE L RLA PGEF+RR Sbjct: 63 LVMWFIGVKKGLEIEYKNYVGEELVEINCHGGIVVTNSILE-LILSSGARLALPGEFTRR 121 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NGK+DL++AE++ DLI ++++ Q +S+ +G+ S L +++DKL ++ E ++ Sbjct: 122 AFLNGKMDLVKAEAIHDLIMAKSQKQAHMSVNKFTGKTSDLLSKFLDKLNYLIGLCEVNI 181 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D+ E +DV+ + +L I L +IS + K + I G K+ ILG N GKSSL Sbjct: 182 DYPEYDDVEQLDQEIMLKSIENLATEISEVLEISKRSQKIFEGIKVAILGKPNVGKSSLL 241 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 NAL ++ AIVTDI GTTRD++ L+G L + DTAG+R++D+++E+ GIK++ ++ Sbjct: 242 NALVSENKAIVTDIAGTTRDLIETSYQLDGILFTLVDTAGLRKSDELIEQIGIKKSLEQI 301 Query: 297 ENADLIL-LLKEINSKKEI-------SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTG 348 + ADLIL ++ +N++ E S +N +I I K DL + D +++S Sbjct: 302 KKADLILHVIDPLNNEDEFDLKIEQESKKENKTYIKIINKKDLIIGEKVKSDLVLTSALN 361 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGL--DI 404 + +L +I S SN I ++ R + + + L A SLN GL D+ Sbjct: 362 NDIIDLEKEIISKYSN-INLDDERILNNTRQISLIEEAKNNLNNAIKSLN---LGLTFDV 417 Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 I ++ A + +I G V+ E LLD +F FC+GK Sbjct: 418 IIVDIYNAWEKISEIKGNVNKEDLLDSMFKNFCLGK 453 >gi|325689629|gb|EGD31633.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis SK115] Length = 457 Score = 217 bits (552), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 153/464 (32%), Positives = 255/464 (54%), Gaps = 32/464 (6%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55 + E +TI A+ST AI I+RLSG F + + I K K + AS +G Sbjct: 2 ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKN-LSKVASHTLNYGHIVDP 60 Query: 56 LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 + ILD+ +L SP++FT ED E + HGGIAV N IL+ LA R+A PGEF++ Sbjct: 61 QNQEILDEVMLGAMRSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARMAEPGEFTK 119 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG++DL +AE++ D+I ++T+ +++ + G LS L ++ + + +E + Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLSDLINNTRREILNTLAQVEVN 179 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +D+ E +DV+ +++ + + +S+ ++ + G+I+R G I+G N GKSSL Sbjct: 180 IDYPEYDDVEEMTTQLMREKTAEFEALLSNLLNTARRGKILREGISTAIIGRPNVGKSSL 239 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N L ++D AIVTDI GTTRDV+ ++++G +K+ DTAGIRETDD+VE+ G++R+ Sbjct: 240 LNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEQIGVERSKKA 299 Query: 296 VENADLILL------LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------I 343 ++ ADL+LL L K+ + ++ + I + K+DL E D L I Sbjct: 300 LQEADLVLLVLNASELLTDQDKQLLEISQDSNRIVLLNKTDLEEKI--ELDQLPADAIKI 357 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIP------SHKRHLYHLSQTVRYLEMASLN- 396 S + INKI+ ++ F K + S+ RH+ + + + L+ + Sbjct: 358 SVLHNQN----INKIEERINQLFFKNAGIVEQDATYLSNARHISLIEKALESLQAVNQGL 413 Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E +D++ ++ LG+ITG ++L+ +FS+FC+GK Sbjct: 414 EMGMPVDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 457 >gi|189426684|ref|YP_001953861.1| tRNA modification GTPase TrmE [Geobacter lovleyi SZ] gi|189422943|gb|ACD97341.1| tRNA modification GTPase TrmE [Geobacter lovleyi SZ] Length = 460 Score = 217 bits (552), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 161/461 (34%), Positives = 246/461 (53%), Gaps = 29/461 (6%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFG-----LD 57 ++TI A++T + I+R+SGP Q+ F K S R F+G LD Sbjct: 4 RDTIAAIATPLGSGGVGIVRVSGPDAEQIGRKLFKGSGTKNGGGFESHRLFYGRLVNPLD 63 Query: 58 GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 ++D+G+ ++ +P S+T ED E H HGG +V +L+ RLA PGEF+RRA Sbjct: 64 DGLIDEGMAVLMRAPRSYTREDVLELHCHGGYYLVRAVLQACISA-GARLAEPGEFTRRA 122 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NG+IDL +AES+ DLI+S TE L+ G LS L + +EA +D Sbjct: 123 FLNGRIDLAQAESVMDLIASRTERSLSLAQSQREGHLSRALAALKAPLVESLALVEAHID 182 Query: 178 FSEEE-DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 F E+E D F + E I + IS ++ G+++R+G +++LG NAGKSSL Sbjct: 183 FPEDEVDPAVFEAIE--TGIATVSAGISRLLATFASGKVLRDGVSVLLLGLPNAGKSSLL 240 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLE 295 NAL+ D AIV+ +PGTTRD++ + L+G VK+ D AGIR D VE+EG++R + Sbjct: 241 NALSGTDRAIVSALPGTTRDLIEETVSLQGLPVKVIDAAGIRAHHADCVEQEGVRRALDK 300 Query: 296 VENADLILLLKEINSK------KEISFPKNIDFIFIGTKSDL-----YSTYTEEYDHL-I 343 ADL+LLL + + + + + ++ + TKSDL S + Sbjct: 301 ASEADLLLLLVDGTAPLSDELLELATSLAALPYLLVVTKSDLPQLLDLSGLAAPLGVCSV 360 Query: 344 SSFTGEGLEELINKIKS--ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401 S+ + G++ L +I + S+ F ++ S+ RH L + R L+ + N+ G Sbjct: 361 SAKSRAGIDRLAAQIYDHFVQSSAFSSDAAAVISNVRHRDVLVRAQRSLQDFADNQS-LG 419 Query: 402 L--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L +++A +LR A +LG+ITG + LLD+IFS FCIGK Sbjct: 420 LPPELLALDLRTALAALGEITGETTTDDLLDLIFSSFCIGK 460 >gi|241759134|ref|ZP_04757242.1| putative tRNA modification GTPase TrmE [Neisseria flavescens SK114] gi|241320553|gb|EER56830.1| putative tRNA modification GTPase TrmE [Neisseria flavescens SK114] Length = 300 Score = 217 bits (552), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 114/286 (39%), Positives = 170/286 (59%), Gaps = 2/286 (0%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+ + TI A++T + +IRLSG + + + + K P PR A F G DG Sbjct: 1 MSATQPTIAAIATAPGRGGVGVIRLSGKNLLPLAQTLSGGKTPKPRTALYTDFLGGDGHP 60 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D G+L+ F +P SFTGED E HGG V++ +L ++ R+A PGEF++RAF N Sbjct: 61 IDNGILLYFAAPASFTGEDVIELQGHGGPVVMDMLLSRCLEL-GARMAEPGEFTKRAFLN 119 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AES+ADLI + ++ R+++ + G S + +D L +R +EA LDF E Sbjct: 120 NKLDLAQAESVADLIDASSKSAARMALRSLKGAFSQHIHELVDDLITLRMLVEATLDFPE 179 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E D+ + + + L+ + + ++ + G I+R G +V++G N GKSSL NALA Sbjct: 180 E-DIDFLEAADARGKLQALQGRLKTVLASAEQGAILREGMNVVLVGAPNVGKSSLLNALA 238 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEK 286 D+AIVTDI GTTRD + + L G V I DTAG+RETDD+VE+ Sbjct: 239 GDDIAIVTDIAGTTRDTVREQITLNGVPVHIIDTAGLRETDDVVEQ 284 >gi|254373237|ref|ZP_04988726.1| GTP-binding protein [Francisella tularensis subsp. novicida GA99-3549] gi|151570964|gb|EDN36618.1| GTP-binding protein [Francisella novicida GA99-3549] Length = 450 Score = 217 bits (552), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 157/465 (33%), Positives = 253/465 (54%), Gaps = 43/465 (9%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62 + K+TI A++T I IIR+SG + E + KK+ PR A+ + D I+D Sbjct: 2 YTKDTIVAIATPQGNGGIGIIRISGIDALAIAEKLTKKQLK-PRYATFCNVYN-DNEIID 59 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 G++I F +P S+TGED E HG ++N I++ A R+A GEF+ RAF N K Sbjct: 60 HGIVIFFKAPLSYTGEDVVEIQAHGNPFILNLIIKA-ALSCGARMAKAGEFTERAFLNNK 118 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 +DL +AE++AD+I++ +E+ + + + + G+ S ++KL ++R ++EA +DF EEE Sbjct: 119 LDLAQAEAVADIINASSEIAAKSAAKSLQGDFSKEINNLLEKLIYLRMYVEASIDFPEEE 178 Query: 183 -----DVQNFSS-KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D + SS +E+ IL +KN K G I+ G ++++G NAGKSSL Sbjct: 179 INFLEDQKIHSSLEEIYKVILAVKNSC-------KQGVILAEGITLILVGKPNAGKSSLL 231 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 NALA K+ AIVT I GTTRD++ + + G + I DTAG+R +DDI+E EGIKR ++ Sbjct: 232 NALAGKESAIVTSIAGTTRDIVKEHIQINGVPMHIIDTAGLRNSDDIIESEGIKRAIKKI 291 Query: 297 ENADLILLLKEINSKKEISF--------------PKNIDFIFIGTKSDLYSTYTEEY-DH 341 + AD +L + + + ++ F PK+ID ++ K DL + +H Sbjct: 292 QEADQVLFVTDDYTSSQVKFSDIKEIIPEFYDQIPKDIDITYVHNKIDLLKEVPHNHANH 351 Query: 342 L-ISSFTGEGL----EELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMASL 395 + IS+ G+ E ++NK+ N+ SI + +RH+ ++ ++++A Sbjct: 352 IYISAENNIGIDKLKEHILNKVGYTNQNE------SIYTARERHVTAINNAFEHIKLAKE 405 Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + +++AE L + L ITG + LL IFS FCIGK Sbjct: 406 QLELGNGELLAEELLIVQEYLNSITGEFSSDDLLGEIFSSFCIGK 450 >gi|62260919|gb|AAX77946.1| unknown protein [synthetic construct] Length = 485 Score = 217 bits (552), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 157/465 (33%), Positives = 253/465 (54%), Gaps = 43/465 (9%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62 + K+TI A++T I IIR+SG + E + KK+ PR A+ + D I+D Sbjct: 28 YTKDTIVAIATPQGNGGIGIIRISGIDALAIAEKLTKKQLK-PRYATFCNVYN-DNEIID 85 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 G++I F +P S+TGED E HG ++N I++ A R+A GEF+ RAF N K Sbjct: 86 HGIIIFFKAPLSYTGEDVVEIQAHGNPFILNLIIKA-ALNCGARMAKAGEFTERAFLNNK 144 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 +DL +AE++AD+I++ +E+ + + + + G+ S ++KL ++R ++EA +DF EEE Sbjct: 145 LDLAQAEAVADIINASSEIAAKSAAKSLQGDFSKEINNLLEKLIYLRMYVEASIDFPEEE 204 Query: 183 -----DVQNFSS-KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D + SS +E+ IL +KN K G I+ G ++++G NAGKSSL Sbjct: 205 INFLEDQKIHSSLEEIYKVILAVKNSC-------KQGVILAEGITLILVGKPNAGKSSLL 257 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 NALA K+ AIVT I GTTRD++ + + G + I DTAG+R +DDI+E EGIKR ++ Sbjct: 258 NALAGKESAIVTSIAGTTRDIVKEHIQINGVPMHIIDTAGLRNSDDIIESEGIKRAIKKI 317 Query: 297 ENADLILLLKEINSKKEISF--------------PKNIDFIFIGTKSDLYSTYTEEY-DH 341 + AD +L + + + ++ F PK+ID ++ K DL + +H Sbjct: 318 QEADQVLFVTDDYTNSQVKFSDIKEIIPEFYDQIPKDIDITYVHNKIDLLKEVPHNHANH 377 Query: 342 L-ISSFTGEGL----EELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMASL 395 + IS+ G+ E ++NK+ N+ SI + +RH+ ++ ++++A Sbjct: 378 IYISAENNIGIDKLKEHILNKVGYTNQNE------SIYTARERHVTAINNAFEHIKLAKE 431 Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + +++AE L + L ITG + LL IFS FCIGK Sbjct: 432 QLELGNGELLAEELLIVQEYLNSITGEFSSDDLLGEIFSSFCIGK 476 >gi|293572712|ref|ZP_06683676.1| tRNA modification GTPase TrmE [Enterococcus faecium E980] gi|291607204|gb|EFF36562.1| tRNA modification GTPase TrmE [Enterococcus faecium E980] Length = 465 Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 153/469 (32%), Positives = 265/469 (56%), Gaps = 42/469 (8%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC----KKKKPFPRKASLRYFFGLDGR 59 E +TI A+ST AISI+RLSG Q+ + + K+ P ++ Y +D + Sbjct: 7 EFDTIAAISTPPGEGAISIVRLSGDQAVQLADKVYHSGNKRLSEVPSH-TIHYGHIVDPK 65 Query: 60 ---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 ++D+ ++ V +P++FT ED E + HGGI VVN IL+ L + RLA PGEF++R Sbjct: 66 SDQLVDEVMVSVMRAPKTFTREDVVEINCHGGIVVVNQILQLLLR-EGARLAEPGEFTKR 124 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NG++DL +AE++ DLI ++T+ L++ + G LS+L ++ + +E ++ Sbjct: 125 AFLNGRVDLSQAEAVMDLIRAKTDKAMGLALNQLDGNLSALIRSLRQEILETLAQVEVNI 184 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D+ E +DV+ ++K +L ++ I + ++ K G+++R G I+G N GKSSL Sbjct: 185 DYPEYDDVEELTTKLLLEKAQMIQQRIQALLATSKQGKVLREGLSTAIIGRPNVGKSSLL 244 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N L +++ AIVTDI GTTRDV+ +++ G +K+ DTAGIRET+D+VE+ G++R+ + Sbjct: 245 NHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSRKAL 304 Query: 297 ENADLILLL----KEINSKKE--ISFPKNIDFIFIGTKSDLYSTYTEEYDHL-------- 342 ADLILL+ + + ++ E + + I + K+DL + +E + Sbjct: 305 AEADLILLVLNQSEPLTAEDEQLLEATSGLKRIILLNKTDLPAQLEQEKLNKWNENEPVF 364 Query: 343 -ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT--VRYLEMASLNEK- 398 IS +GL ++++S +S+ F FS + +R ++S T + LE ASL+ + Sbjct: 365 SISVAKNDGL----DRLESAISDLF----FSGETGERDATYVSNTRHIALLEKASLSLEE 416 Query: 399 -----DCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D G+ D++ ++ LG++ G ++L+ +FS+FC+GK Sbjct: 417 VIAGIDAGMPVDLVQIDMTRCWDYLGEVVGDSVQDELITQLFSQFCLGK 465 >gi|218960498|ref|YP_001740273.1| tRNA modification GTPase trmE [Candidatus Cloacamonas acidaminovorans] gi|167729155|emb|CAO80066.1| tRNA modification GTPase trmE [Candidatus Cloacamonas acidaminovorans] Length = 457 Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 164/466 (35%), Positives = 246/466 (52%), Gaps = 35/466 (7%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQ-VCEFICKKKKPFPRKAS---LRYFFGL 56 M+ E I A T SAI++IRLSG C + V + +K + L F+ Sbjct: 1 MSKISEVICAPVTPLGFSAIAVIRLSGKGCIELVANHFSQSQKLLSSPSHNLILGTFYAE 60 Query: 57 DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 G +D+ L+ VF P S+TGED E HG +VN IL+ L + + RLA PGEF+ R Sbjct: 61 TGEPIDEVLISVFREPHSYTGEDVIEISCHGNPNLVNRILQTL--LLSCRLAKPGEFTLR 118 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NGK+DL +AE++ DLI ++ + ++ + G LS + + ++T +R E + Sbjct: 119 AFLNGKMDLSQAEAVNDLIQAQANQAEKAALMQLKGFLSKYLQELLARITELRIRFELAI 178 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 DF+++ D+ S + ++L + S G+ G +R G KI + G N GKSSLF Sbjct: 179 DFADQ-DLPLPDSNALYQELLDIIKTAEELKSTGEQGRRLREGIKICLTGAPNVGKSSLF 237 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 NAL +++ AIVT PGTTRD L L L G+ + I DTAG+RE D +EKEGI +++ + Sbjct: 238 NALLQQNRAIVTPHPGTTRDYLEEYLSLNGFPIVIYDTAGLREFPDDIEKEGITKSYELM 297 Query: 297 ENADLILLLKEINSKKEI-----------SFPKNI--DFIFIGTKSDLYSTYTEEYDHLI 343 + +DLIL L E + S P ++ + + +K+DL T + I Sbjct: 298 QESDLILYLVEATTVTNPNLQFSDLLSPSSIPPDLHSKTLVVFSKADLMQENTPQIFPGI 357 Query: 344 --SSFTGEGLEELINKI--KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399 S T GL++L + I + +L+ + P I + RHL LS+ ++ L A K Sbjct: 358 YCSVITENGLKDLTDAISKRLMLNTELPNKPIII--NNRHLVALSKCLQSLHRA----KQ 411 Query: 400 C-----GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 C G + IA L AS +L +I G + + LLD IFS+FCIGK Sbjct: 412 CLKENQGYEFIAFELISASNALEEILGVITTDDLLDKIFSEFCIGK 457 >gi|219670950|ref|YP_002461385.1| tRNA modification GTPase TrmE [Desulfitobacterium hafniense DCB-2] gi|219541210|gb|ACL22949.1| tRNA modification GTPase TrmE [Desulfitobacterium hafniense DCB-2] Length = 459 Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 158/464 (34%), Positives = 256/464 (55%), Gaps = 36/464 (7%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRY---FFGLDGRI 60 +TI A++T +I ++RLSGP ++ E F + + K++ +F ++ Sbjct: 3 DTIIALATAVGEGSIHVLRLSGPQAQEIIERAFTPHHPQRWQEKSNFTLHLGYFRAGAKV 62 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+ L+ +P S+TGED E + HGG+ V I+ E + RLA GEF++RAF N Sbjct: 63 LDEVLIGRMSAPGSYTGEDVYEINCHGGLYVAERIMRECIGL-GARLAEAGEFTKRAFLN 121 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GK+DL++AE++ DLI+++T+ L++ M G LS D++ +FIEA +DF E Sbjct: 122 GKLDLIQAEAIVDLIAAKTDSSADLALAQMEGLLSQKILLLKDQVMETLAFIEAGIDFPE 181 Query: 181 EEDVQNFSSKEVLNDI---LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 + DV++ +L I L L D+ + K G I+R G VI+G N GKSSL N Sbjct: 182 D-DVESLDRDALLQRISKGLELARDL---LDGSKTGRILREGMLTVIVGQPNVGKSSLLN 237 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 AL ++ AIVTDIPGTTRD + + + G L+++ DTAG+RE++D+VEK GI+R++ +E Sbjct: 238 ALMGEERAIVTDIPGTTRDEIRESVTIGGILLQLVDTAGLRESEDLVEKLGIERSWKAME 297 Query: 298 NADLILLLKEINSK---KEISFPKNID--FIFIGTKSDLYSTYTEEYDHLISSFTGE--- 349 A+LILL+ + + +E+ D I + K DL E+ + ++ ++ + Sbjct: 298 KAELILLIIQAGQELKAEELKILNQYDQSVIVLINKMDLL-VGKEQGEEVLENYPTQQGV 356 Query: 350 ----------GLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398 G ++L +IK + K +K + S+ R + L + V L + K Sbjct: 357 WIPFSVKENLGFKQLEKEIKQRVYQGKAEKTKEPLLSNIRQITALERAVSALANGWDSVK 416 Query: 399 DCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + GL D+++ ++R A + ++TG E LLD IFS+FCIGK Sbjct: 417 N-GLPWDMVSIDIRQALQEISQMTGDSVQESLLDDIFSRFCIGK 459 >gi|71891804|ref|YP_277533.1| tRNA modification GTPase TrmE [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|123641227|sp|Q494C0|MNME_BLOPB RecName: Full=tRNA modification GTPase mnmE gi|71795910|gb|AAZ40661.1| GTPase for tRNA modification and thiophene and furan oxidation [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 470 Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 171/480 (35%), Positives = 259/480 (53%), Gaps = 50/480 (10%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 MN+ +T+ A+ST I IIR+SG S ++ + K P PRKA F DG I Sbjct: 1 MNYTIDTVVAISTPPGRGGIGIIRISGKSVPEIAPKLLGKI-PNPRKAEYLPFLDTDGSI 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP-NLRLANPGEFSRRAFE 119 L++ + + FP P SFTGE+ E H HGG +++ +LE + K ++R+A+PGEF++RAF Sbjct: 60 LERVIALFFPEPNSFTGENILEIHGHGGQIILDILLERILKTSSDIRIAHPGEFTKRAFL 119 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 N KIDL++AE++AD+I + + + + + G S +++LT++R + E+ +DFS Sbjct: 120 NNKIDLVQAEAIADIIDATSYQAAKSASNSLQGIFSRKIYIILEQLTNLRMYAESSIDFS 179 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 E+E + +++ + + +D+ G ++R G KIVI G NAGKSSLFNAL Sbjct: 180 EDE-ISIIPYEDIKKKLRNIISDVQKMYKSTYHGVLLREGIKIVIAGKPNAGKSSLFNAL 238 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RETDDIVEKEGIKRTFLEVEN 298 D AI++ I GTTRD L + L G I+DTAG+ +++D+ +E+ G+KRT+ E+ N Sbjct: 239 VGIDRAIISTISGTTRDTLHEYIQLNGIAFHITDTAGLQKKSDNEIEQIGMKRTWEELSN 298 Query: 299 ADLILLLKEIN--SKKE----------ISFPKN--IDFIFIGTKSDLYSTYTEEYDHLIS 344 AD IL + + N + KE + F KN I KSDL T + +I+ Sbjct: 299 ADHILWVIDPNDVTNKENDITLKHVEKVLFCKNKKTPITIIHNKSDL--TKNQIGISIIN 356 Query: 345 SFTGEGLEELINK----IKSILSNKFK-KLPFSIPSH-----------KRHLYHLSQTVR 388 ++T L L N ++ LSN K K+ S+ +RHL L ++ + Sbjct: 357 NYTIITLSALFNDGTDLLQEYLSNNIKSKIQQDCKSNLSENQGNFIARRRHLNALEKSSK 416 Query: 389 YLEMA--------SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 YL A S+NE + AE+L LA L KI G + LL IFS FCIGK Sbjct: 417 YLFSAQTQLLSTMSINE------LFAEDLGLAHKELSKIFGKFTPDDLLKRIFSTFCIGK 470 >gi|187931774|ref|YP_001891759.1| tRNA modification GTPase TrmE [Francisella tularensis subsp. mediasiatica FSC147] gi|208779948|ref|ZP_03247292.1| tRNA modification GTPase TrmE [Francisella novicida FTG] gi|254374693|ref|ZP_04990174.1| tRNA modification GTPase trmE family protein [Francisella novicida GA99-3548] gi|151572412|gb|EDN38066.1| tRNA modification GTPase trmE family protein [Francisella novicida GA99-3548] gi|187712683|gb|ACD30980.1| GTPase [Francisella tularensis subsp. mediasiatica FSC147] gi|208744403|gb|EDZ90703.1| tRNA modification GTPase TrmE [Francisella novicida FTG] gi|332678598|gb|AEE87727.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Francisella cf. novicida Fx1] Length = 450 Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 157/465 (33%), Positives = 253/465 (54%), Gaps = 43/465 (9%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62 + K+TI A++T I IIR+SG + E + KK+ PR A+ + D I+D Sbjct: 2 YTKDTIVAIATPQGNGGIGIIRISGIDALAIAEKLTKKQLK-PRYATFCNVYN-DNEIID 59 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 G++I F +P S+TGED E HG ++N I++ A R+A GEF+ RAF N K Sbjct: 60 HGIVIFFKAPLSYTGEDVVEIQAHGNPFILNLIIKA-ALNCGARMAKAGEFTERAFLNNK 118 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 +DL +AE++AD+I++ +E+ + + + + G+ S ++KL ++R ++EA +DF EEE Sbjct: 119 LDLAQAEAVADIINASSEIAAKSAAKSLQGDFSKEINNLLEKLIYLRMYVEASIDFPEEE 178 Query: 183 -----DVQNFSS-KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D + SS +E+ IL +KN K G I+ G ++++G NAGKSSL Sbjct: 179 INFLEDQKIHSSLEEIYKVILAVKNSC-------KQGVILAEGITLILVGKPNAGKSSLL 231 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 NALA K+ AIVT I GTTRD++ + + G + I DTAG+R +DDI+E EGIKR ++ Sbjct: 232 NALAGKESAIVTSIAGTTRDIVKEHIQINGVPMHIIDTAGLRNSDDIIESEGIKRAIKKI 291 Query: 297 ENADLILLLKEINSKKEISF--------------PKNIDFIFIGTKSDLYSTYTEEY-DH 341 + AD +L + + + ++ F PK+ID ++ K DL + +H Sbjct: 292 QEADQVLFVTDDYTNSQVKFSDIKEIIPEFYDQIPKDIDITYVHNKIDLLKEVPHNHANH 351 Query: 342 L-ISSFTGEGL----EELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMASL 395 + IS+ G+ E ++NK+ N+ SI + +RH+ ++ ++++A Sbjct: 352 IYISAENNIGIDKLKEHILNKVGYTNQNE------SIYTARERHVTAINNAFEHIKLAKE 405 Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + +++AE L + L ITG + LL IFS FCIGK Sbjct: 406 QLELGNGELLAEELLIVQEYLNSITGEFSSDDLLGEIFSSFCIGK 450 >gi|56708343|ref|YP_170239.1| tRNA modification GTPase TrmE [Francisella tularensis subsp. tularensis SCHU S4] gi|110670814|ref|YP_667371.1| tRNA modification GTPase TrmE [Francisella tularensis subsp. tularensis FSC198] gi|224457467|ref|ZP_03665940.1| tRNA modification GTPase TrmE [Francisella tularensis subsp. tularensis MA00-2987] gi|254370965|ref|ZP_04986969.1| hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254875165|ref|ZP_05247875.1| tRNA modification GTPase trmE family protein [Francisella tularensis subsp. tularensis MA00-2987] gi|81597291|sp|Q5NFF3|MNME_FRATT RecName: Full=tRNA modification GTPase mnmE gi|122970893|sp|Q14GV5|MNME_FRAT1 RecName: Full=tRNA modification GTPase mnmE gi|56604835|emb|CAG45916.1| tRNA modification GTPase trmE family protein [Francisella tularensis subsp. tularensis SCHU S4] gi|110321147|emb|CAL09299.1| tRNA modification GTPase trmE family protein [Francisella tularensis subsp. tularensis FSC198] gi|151569207|gb|EDN34861.1| hypothetical protein FTBG_01711 [Francisella tularensis subsp. tularensis FSC033] gi|254841164|gb|EET19600.1| tRNA modification GTPase trmE family protein [Francisella tularensis subsp. tularensis MA00-2987] gi|282159580|gb|ADA78971.1| tRNA modification GTPase TrmE [Francisella tularensis subsp. tularensis NE061598] Length = 450 Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 157/465 (33%), Positives = 253/465 (54%), Gaps = 43/465 (9%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62 + K+TI A++T I IIR+SG + E + KK+ PR A+ + D I+D Sbjct: 2 YTKDTIVAIATPQGNGGIGIIRISGIDALAIAEKLTKKQLK-PRYATFCNVYN-DNEIID 59 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 G++I F +P S+TGED E HG ++N I++ A R+A GEF+ RAF N K Sbjct: 60 HGIIIFFKAPLSYTGEDVVEIQAHGNPFILNLIIKA-ALNCGARMAKAGEFTERAFLNNK 118 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 +DL +AE++AD+I++ +E+ + + + + G+ S ++KL ++R ++EA +DF EEE Sbjct: 119 LDLAQAEAVADIINASSEIAAKSAAKSLQGDFSKEINNLLEKLIYLRMYVEASIDFPEEE 178 Query: 183 -----DVQNFSS-KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D + SS +E+ IL +KN K G I+ G ++++G NAGKSSL Sbjct: 179 INFLEDQKIHSSLEEIYKVILAVKNSC-------KQGVILAEGITLILVGKPNAGKSSLL 231 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 NALA K+ AIVT I GTTRD++ + + G + I DTAG+R +DDI+E EGIKR ++ Sbjct: 232 NALAGKESAIVTSIAGTTRDIVKEHIQINGVPMHIIDTAGLRNSDDIIESEGIKRAIKKI 291 Query: 297 ENADLILLLKEINSKKEISF--------------PKNIDFIFIGTKSDLYSTYTEEY-DH 341 + AD +L + + + ++ F PK+ID ++ K DL + +H Sbjct: 292 QEADQVLFVTDDYTNSQVKFSDIKEIIPEFYDQIPKDIDITYVHNKIDLLKEVPHNHANH 351 Query: 342 L-ISSFTGEGL----EELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMASL 395 + IS+ G+ E ++NK+ N+ SI + +RH+ ++ ++++A Sbjct: 352 IYISAENNIGIDKLKEHILNKVGYTNQNE------SIYTARERHVTAINNAFEHIKLAKE 405 Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + +++AE L + L ITG + LL IFS FCIGK Sbjct: 406 QLELGNGELLAEELLIVQEYLNSITGEFSSDDLLGEIFSSFCIGK 450 >gi|332366815|gb|EGJ44556.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis SK1059] Length = 479 Score = 216 bits (551), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 147/459 (32%), Positives = 258/459 (56%), Gaps = 22/459 (4%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLDGR 59 + E +TI A+ST AI I+RLSG F + + I K K ++ +L Y +D + Sbjct: 24 ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKNLSKVESHTLNYGHIVDPQ 83 Query: 60 ---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 ILD+ +L SP++FT ED E + HGGIAV N IL+ LA R+A PGEF++R Sbjct: 84 NQEILDEVMLGAMRSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARMAEPGEFTKR 142 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NG++DL +AE++ D+I ++T+ +++ + G LS+L K+ + + +E ++ Sbjct: 143 AFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQKILNTLAQVEVNI 202 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D+ E +DV+ +++ + + +S+ + + G+I+R G I+G N GKSSL Sbjct: 203 DYPEYDDVEEMTTQLMREKTAEFEALLSNLLDTARRGKILREGISTAIIGRPNVGKSSLL 262 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N L ++D AIVTDI GTTRDV+ ++++G +K+ DTAGIRETDD+VE+ G++R+ + Sbjct: 263 NNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEQIGVERSKKAL 322 Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------IS 344 + ADL+LL+ + ++ + ++ + I + K+DL E D L IS Sbjct: 323 QEADLVLLVLNASEPLTDQDRQLLEISQDSNRIVLLNKTDLEEKI--ELDQLPTDVIKIS 380 Query: 345 SFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCG 401 + ++++ +I + + + + S+ RH+ + + + L+ + E Sbjct: 381 VLHNQNIDKIEERINQLFFENAGIVEQDATYLSNARHISLIEKALESLQAVNQGLEMGMP 440 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ ++ LG+ITG ++L+ +FS+FC+GK Sbjct: 441 VDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 479 >gi|257885581|ref|ZP_05665234.1| tRNA modification GTPase mnmE [Enterococcus faecium 1,231,501] gi|293553541|ref|ZP_06674168.1| tRNA modification GTPase TrmE [Enterococcus faecium E1039] gi|257821437|gb|EEV48567.1| tRNA modification GTPase mnmE [Enterococcus faecium 1,231,501] gi|291602296|gb|EFF32521.1| tRNA modification GTPase TrmE [Enterococcus faecium E1039] Length = 465 Score = 216 bits (551), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 154/469 (32%), Positives = 265/469 (56%), Gaps = 42/469 (8%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC----KKKKPFPRKASLRYFFGLD-- 57 E +TI A+ST AISI+RLSG Q+ + + K+ P ++ Y +D Sbjct: 7 EFDTIAAISTPPGEGAISIVRLSGDQAVQLADKVYQSGNKRLSEVPSH-TIHYGHIVDPK 65 Query: 58 -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 +++D+ ++ V +P++FT ED E + HGGI VVN IL+ L + RLA PGEF++R Sbjct: 66 SNQLVDEVMVSVMRAPKTFTREDVVEINCHGGIVVVNQILQLLLR-EGARLAEPGEFTKR 124 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NG++DL +AE++ DLI ++T+ L++ + G LS+L ++ + +E ++ Sbjct: 125 AFLNGRVDLSQAEAVMDLIRAKTDKAMGLALNQLDGNLSALIRSLRQEILETLAQVEVNI 184 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D+ E +DV+ ++K +L ++ I + ++ K G+++R G I+G N GKSSL Sbjct: 185 DYPEYDDVEELTTKLLLEKAQMIQQRIQALLATSKQGKVLREGLSTAIIGRPNVGKSSLL 244 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N L +++ AIVTDI GTTRDV+ +++ G +K+ DTAGIRET+D+VE+ G++R+ + Sbjct: 245 NHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSRKAL 304 Query: 297 ENADLILLL----KEINSKKE--ISFPKNIDFIFIGTKSDLYSTYTEE-YDHL------- 342 ADLILL+ + + ++ E + + I + K+DL + +E L Sbjct: 305 AEADLILLVLNQSEPLTAEDEQLLEATSGLKRIILLNKTDLPAQLEQEKLKKLIENEPVF 364 Query: 343 -ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT--VRYLEMASLNEK- 398 IS +GL ++++S +S+ F FS + +R ++S T + LE ASL+ + Sbjct: 365 SISVAKNDGL----DRLESAISDLF----FSGETGERDATYVSNTRHIALLEKASLSLEE 416 Query: 399 -----DCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D G+ D++ ++ LG++ G ++L+ +FS+FC+GK Sbjct: 417 VIAGIDAGMPVDLVQIDMTRCWDYLGEVVGDSVQDELITQLFSQFCLGK 465 >gi|257899265|ref|ZP_05678918.1| tRNA modification GTPase mnmE [Enterococcus faecium Com15] gi|257837177|gb|EEV62251.1| tRNA modification GTPase mnmE [Enterococcus faecium Com15] Length = 465 Score = 216 bits (551), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 153/469 (32%), Positives = 265/469 (56%), Gaps = 42/469 (8%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC----KKKKPFPRKASLRYFFGLDGR 59 E +TI A+ST AISI+RLSG Q+ + + K+ P ++ Y +D + Sbjct: 7 EFDTIAAISTPPGEGAISIVRLSGDQAVQLADKVYHSGNKRLSEVPSH-TIHYGHIVDPK 65 Query: 60 ---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 ++D+ ++ V +P++FT ED E + HGGI VVN IL+ L + RLA PGEF++R Sbjct: 66 SDQLVDEVMVSVMRAPKTFTREDVVEINCHGGIVVVNQILQLLLR-EGARLAEPGEFTKR 124 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NG++DL +AE++ DLI ++T+ L++ + G LS+L ++ + +E ++ Sbjct: 125 AFLNGRVDLSQAEAVMDLIRAKTDKAMGLALNQLDGNLSALIRSLRQEILETLAQVEVNI 184 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D+ E +DV+ ++K +L ++ I + ++ K G+++R G I+G N GKSSL Sbjct: 185 DYPEYDDVEELTTKLLLEKAQMIQQRIQALLATSKQGKVLREGLSTAIIGRPNVGKSSLL 244 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N L +++ AIVTDI GTTRDV+ +++ G +K+ DTAGIRET+D+VE+ G++R+ + Sbjct: 245 NHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSRKAL 304 Query: 297 ENADLILLL----KEINSKKE--ISFPKNIDFIFIGTKSDLYSTYTEEYDHL-------- 342 ADLILL+ + + ++ E + + I + K+DL + +E + Sbjct: 305 AEADLILLVLNQSEPLTAEDEQLLEATSGLKRIILLNKTDLPAQLEQEKLNKWIENEPVF 364 Query: 343 -ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT--VRYLEMASLNEK- 398 IS +GL ++++S +S+ F FS + +R ++S T + LE ASL+ + Sbjct: 365 SISVAKNDGL----DRLESAISDLF----FSGETGERDATYVSNTRHIALLEKASLSLEE 416 Query: 399 -----DCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D G+ D++ ++ LG++ G ++L+ +FS+FC+GK Sbjct: 417 VIAGIDAGMPVDLVQIDMTRCWDYLGEVVGDSVQDELITQLFSQFCLGK 465 >gi|15925702|ref|NP_373236.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus Mu50] gi|156981027|ref|YP_001443286.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus Mu3] gi|255007483|ref|ZP_05146084.2| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus Mu50-omega] gi|21363015|sp|Q931E1|MNME_STAAM RecName: Full=tRNA modification GTPase mnmE gi|166234822|sp|A7X7A8|MNME_STAA1 RecName: Full=tRNA modification GTPase mnmE gi|14248487|dbj|BAB58874.1| tRNA modification GTPase trmE [Staphylococcus aureus subsp. aureus Mu50] gi|156723162|dbj|BAF79579.1| possible thiophene and furan oxidation protein [Staphylococcus aureus subsp. aureus Mu3] Length = 459 Score = 216 bits (551), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 151/462 (32%), Positives = 251/462 (54%), Gaps = 33/462 (7%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD--- 62 +TI ++ST AI I+RLSGP ++ + + K K S +G I+D Sbjct: 4 DTITSISTPMGEGAIGIVRLSGPQAVEIADKLYKGKHLLNDVPSHTINYG---HIIDPES 60 Query: 63 -----KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 + ++ V +P++FT ED E + HGGI +N +LE L R+A PGEF++RA Sbjct: 61 KEVVEEVMVSVLRAPKTFTREDIIEINCHGGILTINRVLE-LTMTYGARMAEPGEFTKRA 119 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NG+IDL +AE++ D I S+T+ +++M + G LS L + + I + +E ++D Sbjct: 120 FLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEILAQVEVNID 179 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 + E +DV++ +++ +L +K +I+ + G G+I+R G VI+G N GKSS+ N Sbjct: 180 YPEYDDVEDATTEFLLEQSKEIKQEINRLLDTGAQGKIMREGLSTVIVGKPNVGKSSMLN 239 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 L + + AIVT++ GTTRDVL +++ +++ DTAGIRET+DIVEK G++R+ + Sbjct: 240 NLIQDNKAIVTEVAGTTRDVLEEYVNVRSVPLRLVDTAGIRETEDIVEKIGVERSRKALS 299 Query: 298 NADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTY-TEEYDHLI----- 343 ADLIL + +N+ + ++ KN D I I K DL E +I Sbjct: 300 QADLILFV--LNNNEALTQEDYTLYEVVKNEDVIVIVNKMDLEQNIDINEVKDMIGDTPL 357 Query: 344 ---SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEK 398 S EG++EL +I+ + + + + S+ RH+ L Q + ++ A E Sbjct: 358 IQTSMLKQEGIDELEIQIRDLFFGGEVQNQDMTYVSNSRHISLLKQARQTIQDAIDAAES 417 Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+I G ++L+D +FS+FC+GK Sbjct: 418 GVPMDMVQIDLTRTWEILGEIIGETASDELIDQLFSQFCLGK 459 >gi|15675063|ref|NP_269237.1| tRNA modification GTPase TrmE [Streptococcus pyogenes M1 GAS] gi|71910607|ref|YP_282157.1| tRNA modification GTPase TrmE [Streptococcus pyogenes MGAS5005] gi|21363025|sp|Q99ZU0|MNME_STRP1 RecName: Full=tRNA modification GTPase mnmE gi|13622217|gb|AAK33958.1| putative thiophene degradation protein F [Streptococcus pyogenes M1 GAS] gi|71853389|gb|AAZ51412.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase [Streptococcus pyogenes MGAS5005] Length = 458 Score = 216 bits (551), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 146/460 (31%), Positives = 259/460 (56%), Gaps = 24/460 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55 + E +TI A+ST AI I+RLSG + + + K K + AS +G Sbjct: 3 ITKEFDTITAISTPLGEGAIGIVRLSGTDALAIAQSVFKGKN-LEQVASHTINYGHIINP 61 Query: 56 LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 G I+D+ ++ V +P++FT E+ E + HGGIAV N IL+ L + R+A PGEF++ Sbjct: 62 KTGTIIDEVMVSVMLAPKTFTRENVVEINTHGGIAVTNEILQLLIRQ-GARMAEPGEFTK 120 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG++DL +AE++ D+I ++T+ ++++ + G LS L ++ + + +E + Sbjct: 121 RAFLNGRVDLTQAEAVMDIIRAKTDKAMTIAVKQLDGSLSQLINDTRQEILNTLAQVEVN 180 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +D+ E +DV+ ++ + ++ + S + K G+I+R G I+G N GKSSL Sbjct: 181 IDYPEYDDVEEMTTALLREKTQEFQSLLESLLRTAKRGKILREGLSTAIIGRPNVGKSSL 240 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N L ++D AIVTDI GTTRDV+ ++++G +K+ DTAGIRETDD+VE+ G++R+ Sbjct: 241 LNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAGIRETDDLVEQIGVERSKKA 300 Query: 296 VENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEEY---DHL-ISS 345 ++ ADL+LL+ + K ++ ++ + I + K+DL E D++ IS Sbjct: 301 LQEADLVLLVLNASEKLTDQDRALLNLSQDSNRIILLNKTDLEQKIELEQLPDDYIPISV 360 Query: 346 FTGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK---DC 400 T + + + ++I + + + + S+ RH+ + + V+ LE ++N+ Sbjct: 361 LTNQNINLIEDRINQLFFDNAGLVEQDATYLSNARHISLIEKAVQSLE--AVNDGLALGM 418 Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+ITG ++L+ +FS+FC+GK Sbjct: 419 PVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 458 >gi|134301618|ref|YP_001121586.1| tRNA modification GTPase TrmE [Francisella tularensis subsp. tularensis WY96-3418] gi|166991112|sp|A4IX14|MNME_FRATW RecName: Full=tRNA modification GTPase mnmE gi|134049395|gb|ABO46466.1| tRNA modification GTPase TrmE [Francisella tularensis subsp. tularensis WY96-3418] Length = 450 Score = 216 bits (551), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 157/465 (33%), Positives = 253/465 (54%), Gaps = 43/465 (9%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62 + K+TI A++T I IIR+SG + E + KK+ PR A+ + D I+D Sbjct: 2 YTKDTIVAIATPQGNGGIGIIRISGIDALAIAEKLTKKQLK-PRYATFCNVYN-DNEIID 59 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 G++I F +P S+TGED E HG ++N I++ A R+A GEF+ RAF N K Sbjct: 60 HGIVIFFKAPLSYTGEDVVEIQAHGNPFILNLIIKA-ALNCGARMAKAGEFTERAFLNNK 118 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 +DL +AE++AD+I++ +E+ + + + + G+ S ++KL ++R ++EA +DF EEE Sbjct: 119 LDLAQAEAVADIINASSEIAAKSAAKSLQGDFSKEINNLLEKLIYLRMYVEASIDFPEEE 178 Query: 183 -----DVQNFSS-KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D + SS +E+ IL +KN K G I+ G ++++G NAGKSSL Sbjct: 179 INFLEDQKIHSSLEEIYKVILAVKNSC-------KQGVILAEGITLILVGKPNAGKSSLL 231 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 NALA K+ AIVT I GTTRD++ + + G + I DTAG+R +DDI+E EGIKR ++ Sbjct: 232 NALAGKESAIVTSIAGTTRDIVKEHIQINGVPMHIIDTAGLRNSDDIIESEGIKRAIKKI 291 Query: 297 ENADLILLLKEINSKKEISF--------------PKNIDFIFIGTKSDLYSTYTEEY-DH 341 + AD +L + + + ++ F PK+ID ++ K DL + +H Sbjct: 292 QEADQVLFVTDDYTNSQVKFSDIKEIIPEFYDQIPKDIDITYVHNKIDLLKEVPHNHANH 351 Query: 342 L-ISSFTGEGL----EELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMASL 395 + IS+ G+ E ++NK+ N+ SI + +RH+ ++ ++++A Sbjct: 352 IYISAENNIGIDKLKEHILNKVGYTNQNE------SIYTARERHVTAINNAFEHIKLARE 405 Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + +++AE L + L ITG + LL IFS FCIGK Sbjct: 406 QLELGNGELLAEELLIVQEYLNSITGEFSSDDLLGEIFSSFCIGK 450 >gi|327470938|gb|EGF16394.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis SK330] Length = 457 Score = 216 bits (551), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 146/459 (31%), Positives = 259/459 (56%), Gaps = 22/459 (4%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLDGR 59 + E +TI A+ST AI I+RLSG F + + I K K ++ +L Y +D + Sbjct: 2 ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKNLSKVESHTLNYGHIVDPQ 61 Query: 60 ---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 ILD+ ++ SP++FT ED E + HGGIAV N IL+ LA R+A PGEF++R Sbjct: 62 NQEILDEVMVGAMRSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARMAEPGEFTKR 120 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NG++DL +AE++ D+I ++T+ +++ + G LS+L ++ + + +E ++ Sbjct: 121 AFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQEILNTLAQVEVNI 180 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D+ E +DV+ +++ + + +S+ + + G+I+R G I+G N GKSSL Sbjct: 181 DYPEYDDVEEMTTQLMREKTAEFEALLSNLLDTARRGKILREGISTAIIGRPNVGKSSLL 240 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N L ++D AIVTDI GTTRDV+ ++++G +K+ DTAGIRETDD+VE+ G++R+ + Sbjct: 241 NNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEQIGVERSKKAL 300 Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------IS 344 + ADL+LL+ ++ K+ + ++ + I + K+DL E D L IS Sbjct: 301 QEADLVLLVLNVSEPLTDQDKQLLEISQDSNRIVLLNKTDLEEKI--ELDQLPTDVIKIS 358 Query: 345 SFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCG 401 + ++++ +I + + + + S+ RH+ + + + L+ + E Sbjct: 359 VLHNQNIDKIEERINQLFFENAGIVEQDATYLSNARHISLIEKALESLQAVNQGLEMGMP 418 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ ++ LG+ITG ++L+ +FS+FC+GK Sbjct: 419 VDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 457 >gi|118497883|ref|YP_898933.1| tRNA modification GTPase TrmE [Francisella tularensis subsp. novicida U112] gi|194323857|ref|ZP_03057633.1| tRNA modification GTPase TrmE [Francisella tularensis subsp. novicida FTE] gi|166991111|sp|A0Q7G4|MNME_FRATN RecName: Full=tRNA modification GTPase mnmE gi|118423789|gb|ABK90179.1| GTPase of unknown function [Francisella novicida U112] gi|194322221|gb|EDX19703.1| tRNA modification GTPase TrmE [Francisella tularensis subsp. novicida FTE] Length = 450 Score = 216 bits (551), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 157/465 (33%), Positives = 253/465 (54%), Gaps = 43/465 (9%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62 + K+TI A++T I IIR+SG + E + KK+ PR A+ + D I+D Sbjct: 2 YTKDTIVAIATPQGNGGIGIIRISGIDALAIAEKLTKKQLK-PRYATFCNVYN-DNEIID 59 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 G++I F +P S+TGED E HG ++N I++ A R+A GEF+ RAF N K Sbjct: 60 HGIVIFFKAPLSYTGEDVVEIQAHGNPFILNLIIKA-ALNCGARMAKAGEFTERAFLNNK 118 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 +DL +AE++AD+I++ +E+ + + + + G+ S ++KL ++R ++EA +DF EEE Sbjct: 119 LDLTQAEAVADIINASSEIAAKSAAKSLQGDFSKEINNLLEKLIYLRMYVEASIDFPEEE 178 Query: 183 -----DVQNFSS-KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D + SS +E+ IL +KN K G I+ G ++++G NAGKSSL Sbjct: 179 INFLEDQKIHSSLEEIYKVILAVKNSC-------KQGVILAEGITLILVGKPNAGKSSLL 231 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 NALA K+ AIVT I GTTRD++ + + G + I DTAG+R +DDI+E EGIKR ++ Sbjct: 232 NALAGKESAIVTSIAGTTRDIVKEHIQINGVPMHIIDTAGLRNSDDIIESEGIKRAIKKI 291 Query: 297 ENADLILLLKEINSKKEISF--------------PKNIDFIFIGTKSDLYSTYTEEY-DH 341 + AD +L + + + ++ F PK+ID ++ K DL + +H Sbjct: 292 QEADQVLFVTDDYTNSQVKFSDIKEIIPEFYDQIPKDIDITYVHNKIDLLKEVPHNHANH 351 Query: 342 L-ISSFTGEGL----EELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMASL 395 + IS+ G+ E ++NK+ N+ SI + +RH+ ++ ++++A Sbjct: 352 IYISAENNIGIDKLKEHILNKVGYTNQNE------SIYTARERHVTAINNAFEHIKLAKE 405 Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + +++AE L + L ITG + LL IFS FCIGK Sbjct: 406 QLELGNGELLAEELLIVQEYLNSITGEFSSDDLLGEIFSSFCIGK 450 >gi|327462129|gb|EGF08456.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis SK1] Length = 457 Score = 216 bits (551), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 147/459 (32%), Positives = 258/459 (56%), Gaps = 22/459 (4%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLDGR 59 + E +TI A+ST AI I+RLSG F + + I K K ++ +L Y +D + Sbjct: 2 ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKNLSEVESHTLNYGHIVDPQ 61 Query: 60 ---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 ILD+ +L SP++FT ED E + HGGIAV N IL+ LA R+A PGEF++R Sbjct: 62 NQEILDEVMLGAMRSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARMAEPGEFTKR 120 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NG++DL +AE++ D+I ++T+ +++ + G LS+L +L + + +E ++ Sbjct: 121 AFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQELLNTLAQVEVNI 180 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D+ E +DV+ +++ + + +S+ + + G+I+R G I+G N GKSSL Sbjct: 181 DYPEYDDVEEMTTQLMREKTAEFEALLSNLLDTARRGKILREGISTAIIGRPNVGKSSLL 240 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N L ++D AIVTDI GTTRDV+ ++++G +K+ DTAGIRETDD+VE+ G++R+ + Sbjct: 241 NNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEQIGVERSKKAL 300 Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------IS 344 + ADL+LL+ + ++ + ++ + I + K+DL E D L IS Sbjct: 301 QEADLVLLVLNASEPLTDQDRQLLEISQDSNRIVLLNKTDLEEKI--ELDQLPTDAIKIS 358 Query: 345 SFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCG 401 + ++++ +I + + + + S+ RH+ + + + L+ + E Sbjct: 359 VLHNQNIDKIEERINQLFFENAGIVEQDATYLSNARHISLIEKALESLQAVNQGLEMGMP 418 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ ++ LG+ITG ++L+ +FS+FC+GK Sbjct: 419 VDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 457 >gi|312864738|ref|ZP_07724969.1| tRNA modification GTPase TrmE [Streptococcus downei F0415] gi|311099865|gb|EFQ58078.1| tRNA modification GTPase TrmE [Streptococcus downei F0415] Length = 456 Score = 216 bits (551), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 148/464 (31%), Positives = 250/464 (53%), Gaps = 34/464 (7%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLDG 58 + E +TI A+ST AI I+RLSG + + + K K + P D Sbjct: 3 ITKEFDTIAAISTPLGEGAIGIVRLSGSQAVSIAKSVFKGKDLESVPSHTINYGHIMEDS 62 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 I+D+ ++ V SP++FT ED E + HGG+AV N IL+ L + R+A PGEF++RAF Sbjct: 63 EIIDEVMVSVMRSPKTFTREDVVEINTHGGLAVTNEILQLLLR-SGARMAEPGEFTKRAF 121 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG++DL +AE++ DLI ++T+ +++ + G L +L ++ + + +E ++D+ Sbjct: 122 LNGRVDLTQAEAVMDLIRAKTDKAMNIAVSQLDGSLKNLINNTRQEILNTLAQVEVNIDY 181 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E +DV+ ++ + + ++ ++ K G+I+R G I+G N GKSSL N Sbjct: 182 PEYDDVEEMTTALMCEKTQEFEELLTRLLATAKRGKILREGLSTAIIGRPNVGKSSLLNN 241 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L ++D AIVTD+ GTTRDV+ ++++G +K+ DTAGIRETDD+VEK G++R+ + Sbjct: 242 LLREDKAIVTDVAGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEKIGVERSRKALAE 301 Query: 299 ADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTYTEEYDHL------IS 344 ADL+LL+ +N + +S K I + K+DL E D L IS Sbjct: 302 ADLVLLV--LNGSENLSQQDRDLLDISKEAKRIILINKTDLPQKI--ELDQLPTDAIPIS 357 Query: 345 SFTGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402 + +E + +I + + + + S+ RH+ + + +ASL E + GL Sbjct: 358 VLNNQNMEAIEERINDLFFDNAGLVEKDATYLSNSRHISLIEKA-----LASLQEVNQGL 412 Query: 403 ------DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D++ ++ LG+ITG ++L+ +FS+FC+GK Sbjct: 413 EAGMPVDLLQVDMTRCWEILGEITGDAAPDELITQLFSQFCLGK 456 >gi|324992824|gb|EGC24744.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis SK405] gi|327489811|gb|EGF21601.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis SK1058] Length = 457 Score = 216 bits (551), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 146/459 (31%), Positives = 259/459 (56%), Gaps = 22/459 (4%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLDGR 59 + E +TI A+ST AI I+RLSG F + + I K K ++ +L Y +D + Sbjct: 2 ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKNLSEVESHTLNYGHIVDPQ 61 Query: 60 ---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 ILD+ +L SP++FT ED E + HGGIAV N IL+ LA R+A PGEF++R Sbjct: 62 NQEILDEVMLGAMRSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARMAEPGEFTKR 120 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NG++DL +AE++ D+I ++T+ +++ + G LS+L ++ + + +E ++ Sbjct: 121 AFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQEILNTLAQVEVNI 180 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D+ E +DV+ +++ + + +S+ ++ + G+I+R G I+G N GKSSL Sbjct: 181 DYPEYDDVEEMTTQLMREKTAEFETLLSNLLNTARRGKILREGISTAIIGRPNVGKSSLL 240 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N L ++D AIVTDI GTTRDV+ ++++G +K+ DTAGIRETDD+VE+ G++R+ + Sbjct: 241 NNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEQIGVERSKKAL 300 Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------IS 344 + ADL+LL+ + ++ + ++ + I + K+DL E D L IS Sbjct: 301 QEADLVLLVLNASEPLTDQDRQLLEISQDSNRIVLLNKTDLEEKI--ELDQLPTDAIKIS 358 Query: 345 SFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCG 401 + ++++ +I + + + + S+ RH+ + + + L+ + E Sbjct: 359 VLHNQNIDKIEERINQLFFENAGIVEQDATYLSNARHISLIEKALESLQAVNQGLEMGMP 418 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ ++ LG+ITG ++L+ +FS+FC+GK Sbjct: 419 VDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 457 >gi|167759571|ref|ZP_02431698.1| hypothetical protein CLOSCI_01928 [Clostridium scindens ATCC 35704] gi|167662798|gb|EDS06928.1| hypothetical protein CLOSCI_01928 [Clostridium scindens ATCC 35704] Length = 471 Score = 216 bits (551), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 164/475 (34%), Positives = 252/475 (53%), Gaps = 42/475 (8%) Query: 2 NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL--- 56 NH TI A+ST + I I+R+SG F + + + KK K ++ S +G Sbjct: 3 NHYDTTIAAISTAMSNAGIGIVRMSGCDAFDIADRVYKGKKNKKLSQQQSHTIHYGYITD 62 Query: 57 DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 G+ +D+ L+++ SP S+TGED+ E + HGG+ +V ILE L + R A PGEF++R Sbjct: 63 RGKEIDEVLVMIMRSPHSYTGEDTIEINCHGGVYIVKKILELLIE-NGARPAQPGEFTKR 121 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NG++DL +AE++ DLI S+ E + S+ + G + + ++ + +FIE L Sbjct: 122 AFLNGRLDLSQAEAVGDLIVSQNEYALQSSINQLKGSIKNKINNIRKEIIYHTAFIETAL 181 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D E V + +E+ + + L+NDI + G +I+ G + VILG NAGKSSL Sbjct: 182 DDPEHISVDEYG-EELESVVRKLRNDIEKLLRTCDDGRLIKEGIQTVILGKPNAGKSSLL 240 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N L +D AIVT+I GTTRDVL ++L+G + I DTAGIR+T D+VEK G+++ Sbjct: 241 NVLLGQDKAIVTEIAGTTRDVLEEHINLQGISLNIMDTAGIRDTKDVVEKIGVEKAKSHA 300 Query: 297 ENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEEYDH--------- 341 + ADLI+ + + +++ + +S K I + KSDL T+E Sbjct: 301 DKADLIIYVIDASTELDENDYEILSLIKGKPSIILLNKSDLDMIVTKEKVQEAYFASNPA 360 Query: 342 ----------LISSFTGEGLEELINKIKSILSNKFK-KLPFS---IPSHKRHLYHLSQTV 387 IS+ +G++EL K+K + F+ L F+ ++ RH L Sbjct: 361 KKSGEPIPIIEISAKNKQGIDELEEKLKDMF---FEGNLSFNDEIYITNIRHKTALQDAY 417 Query: 388 RYLEMASLNEKDCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LE + D G+ D + +L A SLG ITG E L++ IFSKFC+GK Sbjct: 418 NALERVT-ESIDAGMPEDFYSIDLMDAYESLGSITGETIGEDLVNEIFSKFCMGK 471 >gi|322385140|ref|ZP_08058787.1| thiophene and furan oxidation protein ThdF [Streptococcus cristatus ATCC 51100] gi|321270764|gb|EFX53677.1| thiophene and furan oxidation protein ThdF [Streptococcus cristatus ATCC 51100] Length = 520 Score = 216 bits (551), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 149/460 (32%), Positives = 254/460 (55%), Gaps = 24/460 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55 + E +TI A+ST AI I+RLSG F + + I + K + AS +G Sbjct: 65 ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFRGKD-LSKVASHTLNYGHIVDP 123 Query: 56 LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 + ILD+ ++ SP++FT ED E + HGGIAV N IL+ LA RLA PGEF++ Sbjct: 124 QNQEILDEVMVGAMRSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 182 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG++DL +AE++ D+I ++T+ +++ + G LS L ++ + + +E + Sbjct: 183 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLSDLINSTRQEILNTLAQVEVN 242 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +D+ E +DV+ +++ + L + ++ + + G+I+R G I+G N GKSSL Sbjct: 243 IDYPEYDDVEEATTEIIREKTLEFEQLLTHLLKTARRGKILREGISTAIIGRPNVGKSSL 302 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N L ++D AIVTDI GTTRDV+ +++ G +K+ DTAGIRETDD+VE+ G++R+ Sbjct: 303 LNNLLREDKAIVTDIEGTTRDVIEEYVNINGVPLKLIDTAGIRETDDLVEQIGVERSKKA 362 Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------I 343 ++ ADL+LL+ + K+ + ++ + I + K+DL E D L I Sbjct: 363 LQEADLVLLVLNASEPLTDQDKQLLEISQDSNRIVLLNKTDLEEKI--ELDQLPANAIKI 420 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLP--FSIPSHKRHLYHLSQTVRYLEMASLN-EKDC 400 S + ++++ ++I + L + S+ RH+ + + V L+ + E Sbjct: 421 SVLHNQNIDKIEDRINQLFFENAGILEQDATYLSNARHISLIKKAVESLQAVNQGLELGM 480 Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+ITG ++L+ +FS+FC+GK Sbjct: 481 PVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 520 >gi|324994536|gb|EGC26449.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis SK678] Length = 457 Score = 216 bits (551), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 146/459 (31%), Positives = 259/459 (56%), Gaps = 22/459 (4%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLDGR 59 + E +TI A+ST AI I+RLSG F + + I K K ++ +L Y +D + Sbjct: 2 ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKNLSKVESHTLNYGHIVDPQ 61 Query: 60 ---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 ILD+ +L SP++FT ED E + HGGIAV N IL+ LA R+A PGEF++R Sbjct: 62 NQEILDEVMLGAMRSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARMAEPGEFTKR 120 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NG++DL +AE++ D+I ++T+ +++ + G LS+L ++ + + +E ++ Sbjct: 121 AFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQEILNTLAQVEVNI 180 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D+ E +DV+ +++ + + +S+ ++ + G+I+R G I+G N GKSSL Sbjct: 181 DYPEYDDVEEMTTQLMREKTAEFETLLSNLLNTARRGKILREGISTAIIGRPNVGKSSLL 240 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N L ++D AIVTDI GTTRDV+ ++++G +K+ DTAGIRETDD+VE+ G++R+ + Sbjct: 241 NNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEQIGVERSKKAL 300 Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------IS 344 + ADL+LL+ + ++ + ++ + I + K+DL E D L IS Sbjct: 301 QEADLVLLVLNASEPLTDQDRQLLEISQDSNRIVLLNKTDLEEKI--ELDQLPTDAIKIS 358 Query: 345 SFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCG 401 + ++++ +I + + + + S+ RH+ + + + L+ + E Sbjct: 359 VLHNQNIDKIEERINQLFFENAGIVEQDATYLSNARHISLIEKALESLQAVNQGLEMGMP 418 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ ++ LG+ITG ++L+ +FS+FC+GK Sbjct: 419 VDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 457 >gi|331092106|ref|ZP_08340937.1| tRNA modification GTPase TrmE [Lachnospiraceae bacterium 2_1_46FAA] gi|330402307|gb|EGG81878.1| tRNA modification GTPase TrmE [Lachnospiraceae bacterium 2_1_46FAA] Length = 463 Score = 216 bits (551), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 161/462 (34%), Positives = 251/462 (54%), Gaps = 31/462 (6%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL--DGR 59 +K+TI A++T + I I+R+SG ++ + F KK+K F + + +G DG Sbjct: 8 KKDTIAAIATAMSSAGIGIVRISGREAIEIIQKIFRGKKEKNFAEEKTYTIHYGYIADGE 67 Query: 60 -ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 I+D+ L+++ +P S+TGED+ E HGGI VV I+E + K R A PGEF++RAF Sbjct: 68 EIIDEVLVMLMKAPHSYTGEDTVEIDCHGGIYVVKKIMETVIKY-GARPAEPGEFTKRAF 126 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NGK+DL +AE++ D+I S+ E + S+ + G + G+ +++ + +FIE LD Sbjct: 127 LNGKMDLSQAEAVIDIIDSKNEYALKSSVSQLKGSVQKKIGEIREEILYHTAFIETALDD 186 Query: 179 SEEEDVQNFSS--KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 E V + K+V++++L +I + G II+ G K VI+G NAGKSSL Sbjct: 187 PEHISVDGYGETLKKVVDNLL---EEIRRLLISADNGRIIKEGIKTVIVGKPNAGKSSLL 243 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N L ++ AIVTDI GTTRDVL ++ L+G + I DTAGIRET D+VEK G+ + Sbjct: 244 NVLVGEERAIVTDIEGTTRDVLEENIQLQGVSLNIMDTAGIRETKDVVEKIGVDKAKNHA 303 Query: 297 ENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH--------L 342 ADLI+ + + N ++ I ++ I + KSDL T++ + Sbjct: 304 NEADLIIYVADASRPLDDNDEEIIEMIRDKQAIVLLNKSDLDMVVTKKELQEKLNKPMIV 363 Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFS---IPSHKRHLYHLSQTVRYLEMASLN-EK 398 IS+ +G++EL +K + + + F+ ++ RH L LE ++ E Sbjct: 364 ISAKEEQGIKELEETLKEMFFH--GDISFNDEVYITNIRHKTALQDAAESLEKVLISIEN 421 Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D + +L A SLG ITG E L++ IFSKFC+GK Sbjct: 422 GMPEDFYSIDLLDAYESLGSITGETIGEDLVNEIFSKFCMGK 463 >gi|169635758|emb|CAQ16332.1| t-RNA modification GTPase protein [Bacillus megaterium] Length = 457 Score = 216 bits (551), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 151/463 (32%), Positives = 239/463 (51%), Gaps = 29/463 (6%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+ ETI AV+T P + I+R+SGP + +++ PR A F+G + + Sbjct: 1 MSVAAETIAAVATAQGPGGVGIVRISGP-LASIAAKAFSERELKPRYAHYGPFYGENREV 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG V++ +L+ ++ LA PGEFS RAF N Sbjct: 60 LDEGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCIQL-GCHLARPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + + R ++ + G S ++L +R ++EA +DF E Sbjct: 119 DKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSQRVHNLTEQLIGLRIYVEAAIDFPE 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + + VL + ++ ++S + + ++ +G ++ G +AGKSS + Sbjct: 179 EE-IDFLADGHVLGMLDTVRQELSPVMREAGPDALLPDGMTVLTAGRPHAGKSSC-STHC 236 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 + AIVT+I GTTRDVL + ++G + + DTAG+R+TDD VEK G++R + AD Sbjct: 237 RTRSAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTDDQVEKIGVQRALKAIGEAD 296 Query: 301 LILLLKEINSKKE-----------ISFPKNIDFIFIGTKSDLYSTYTE----EYDHLISS 345 +LL+ + + + P I K+DL + H+ S Sbjct: 297 RVLLVVDATAPEADDPFALWPEFLQQRPDPAKVTLIRNKADLTGEDIRLQVCDDGHVTIS 356 Query: 346 FT------GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNE 397 + G+GLE L + +K+ + + + S + +RHL L LE A L Sbjct: 357 LSARSTDAGDGLELLRDHLKACMGYE-QTSESSFSARRRHLEALRHASDALEHGRAQLTL 415 Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G +++AE+LR A SLG+ITG + LL IFS F IGK Sbjct: 416 AGAG-ELLAEDLRQAQHSLGEITGAFSSDDLLGRIFSSFRIGK 457 >gi|89897801|ref|YP_521288.1| hypothetical protein DSY5055 [Desulfitobacterium hafniense Y51] gi|122480417|sp|Q24M98|MNME_DESHY RecName: Full=tRNA modification GTPase mnmE gi|89337249|dbj|BAE86844.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 459 Score = 216 bits (551), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 157/464 (33%), Positives = 256/464 (55%), Gaps = 36/464 (7%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRY---FFGLDGRI 60 +TI A++T +I ++RLSGP ++ E F + + K++ +F ++ Sbjct: 3 DTIIALATAVGEGSIHVLRLSGPQAQEIIERAFTPHHPQRWQEKSNFTLHLGYFRAGAKV 62 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+ L+ +P S+TGED E + HGG+ + I+ E + RLA GEF++RAF N Sbjct: 63 LDEVLIGRMSAPGSYTGEDVYEINCHGGLYIAERIMRECIGL-GARLAEAGEFTKRAFLN 121 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GK+DL++AE++ DLI+++T+ L++ M G LS D++ +FIEA +DF E Sbjct: 122 GKLDLIQAEAIVDLIAAKTDSSADLALAQMEGLLSQKILLLKDQVMETLAFIEAGIDFPE 181 Query: 181 EEDVQNFSSKEVLNDI---LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 + DV++ +L I L L D+ + K G I+R G VI+G N GKSSL N Sbjct: 182 D-DVESLDRDALLQRISKGLELARDL---LDGSKTGRILREGMLTVIVGQPNVGKSSLLN 237 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 AL ++ AIVTDIPGTTRD + + + G L+++ DTAG+RE++D+VEK GI+R++ +E Sbjct: 238 ALMGEERAIVTDIPGTTRDEIRESVTIGGILLQLVDTAGLRESEDLVEKLGIERSWKAME 297 Query: 298 NADLILLLKEINSK---KEISFPKNID--FIFIGTKSDLYSTYTEEYDHLISSFTGE--- 349 A+LILL+ + + +E+ D I + K DL + E + ++ ++ + Sbjct: 298 KAELILLIIQAGQELKAEELKILSQYDQSVIVLINKMDLLAG-KERGEEVLENYPTQQGV 356 Query: 350 ----------GLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398 G ++L +IK + K +K + S+ R + L + V L + K Sbjct: 357 WIPFSVKENLGFKQLEKEIKQRVYQGKAEKTKEPLLSNIRQITALERAVSALANGWDSVK 416 Query: 399 DCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + GL D+++ ++R A + ++TG E LLD IFS+FCIGK Sbjct: 417 N-GLPWDMVSIDIRQALQEISQMTGDSVQESLLDDIFSRFCIGK 459 >gi|318040678|ref|ZP_07972634.1| tRNA modification GTPase TrmE [Synechococcus sp. CB0101] Length = 449 Score = 216 bits (550), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 142/442 (32%), Positives = 242/442 (54%), Gaps = 31/442 (7%) Query: 19 AISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFG-----LDGRILDKGLLIVFPS 71 +++I+R+SGP + + F +P+ S R +G +G +D+ LL++ + Sbjct: 19 SVAIVRVSGPEAEAIGQRLFSAPGDQPW---ESHRVLYGYVCDPANGERVDEALLLLMRA 75 Query: 72 PESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESL 131 P SFT E EFH HGG+ V +LE L + R A PGEFS+RAF NG++DL AE++ Sbjct: 76 PRSFTRETVVEFHCHGGLISVQRVLE-LVLVSGARRALPGEFSQRAFLNGRLDLTRAEAI 134 Query: 132 ADLISSETEMQRRLSMEGMSGEL----SSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNF 187 ++L+++ + +L+M G+ G L S+L + +D+L + EA +DF E+D+ Sbjct: 135 SELVTARSRRAAQLAMAGLDGGLQVRISALRERLLDQLAEL----EARVDF--EDDLPPL 188 Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247 V ++ ++ D+ ++ G+ G+++R G ++ I+G N GKSSL N L+ + AIV Sbjct: 189 DGDAVALELQAVRTDLEQLVADGERGQLLREGLRVAIVGRPNVGKSSLLNRLSCSERAIV 248 Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307 TD+PGTTRD++ +L L+G + + DTAGIR T D VE+ GI+R+ ++ AD +LLL + Sbjct: 249 TDLPGTTRDLVESELVLQGVPLTLLDTAGIRATTDRVEQIGIERSRSALQVADAVLLLFD 308 Query: 308 INSK--------KEISFPKNIDFIFIGTKSD-LYSTYTEEYDHLISSFTGEGLEELINKI 358 +++ E+ P+ + + +G K+D L + D IS+ TG G EL++++ Sbjct: 309 LSAGWCDDDAALGEL-VPEGVPVLVVGNKADQLTGAPAVQADVCISALTGAGETELVHQL 367 Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGK 418 + + + + ++ + + D +LR A +LG+ Sbjct: 368 LARCGHSDPQGVQLALNRRQQDLAAAAAASLSASLEAASQQLPWDFWTIDLRAAVRALGE 427 Query: 419 ITGCVDVEQLLDIIFSKFCIGK 440 ITG E +LD +FS+FCIGK Sbjct: 428 ITGEEVSEAVLDRVFSRFCIGK 449 >gi|228994203|ref|ZP_04154103.1| tRNA modification GTPase mnmE [Bacillus pseudomycoides DSM 12442] gi|229000273|ref|ZP_04159842.1| tRNA modification GTPase mnmE [Bacillus mycoides Rock3-17] gi|229007799|ref|ZP_04165384.1| tRNA modification GTPase mnmE [Bacillus mycoides Rock1-4] gi|228753459|gb|EEM02912.1| tRNA modification GTPase mnmE [Bacillus mycoides Rock1-4] gi|228759605|gb|EEM08582.1| tRNA modification GTPase mnmE [Bacillus mycoides Rock3-17] gi|228765655|gb|EEM14309.1| tRNA modification GTPase mnmE [Bacillus pseudomycoides DSM 12442] Length = 458 Score = 216 bits (550), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 146/456 (32%), Positives = 252/456 (55%), Gaps = 22/456 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLD---GRIL 61 +TI A+ST AI+I+R+SG + I K K + ++ Y +D +++ Sbjct: 4 DTIAAISTALGEGAIAIVRVSGEDAIEKVNRIFKGKDLTAVSSHTIHYGHIVDLDTDQVI 63 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121 ++ ++ + +P +FT E+ E + HGG+ VN +L+ L +RLA PGEF++RAF NG Sbjct: 64 EEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAFLNG 122 Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181 +IDL +AE++ DLI ++T+ ++M M G LS L G+ ++ + +E ++D+ E Sbjct: 123 RIDLSQAEAVMDLIRAKTDRAMNVAMNQMEGRLSKLIGRLRQEILETLAHVEVNIDYPEY 182 Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 +DV+ + ++ ++ +I + K G+I+R G I+G N GKSSL N+L + Sbjct: 183 DDVEEMTHNILIEKATHVRGEIKKILETSKQGKILREGIATAIIGRPNVGKSSLLNSLVQ 242 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 + AIVTDI GTTRDV+ +++ G +K+ DTAGIRET+DIVE+ G++R+ + ADL Sbjct: 243 EKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDIVERIGVERSKEMMGQADL 302 Query: 302 ILLL----KEINSKKEISFP--KNIDFIFIGTKSDL-------YSTYTEEYDHLISS--F 346 +L++ + + ++ E F + DFI I K+DL T + +I++ Sbjct: 303 VLIVVNYSEALTNEDEDLFRAVRGKDFIVIVNKTDLPKQIDMKRVTELAGKNRMITTSLI 362 Query: 347 TGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGLDI 404 +G++EL I + + + S+ RH+ L+Q + + + E +D+ Sbjct: 363 EEKGVDELEKAIADLFFEGTIESADMTYVSNARHIGLLTQAEKTIGDAIEAIENGVPIDM 422 Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + +L LG+ITG E L+D +FS+FC+GK Sbjct: 423 VQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458 >gi|157149742|ref|YP_001450550.1| tRNA modification GTPase TrmE [Streptococcus gordonii str. Challis substr. CH1] gi|189036214|sp|A8AXP0|MNME_STRGC RecName: Full=tRNA modification GTPase mnmE gi|157074536|gb|ABV09219.1| tRNA modification GTPase TrmE [Streptococcus gordonii str. Challis substr. CH1] Length = 457 Score = 216 bits (550), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 145/460 (31%), Positives = 257/460 (55%), Gaps = 24/460 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55 + E +TI A+ST AI I+RLSG F + + I K K + AS +G Sbjct: 2 ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKD-LSKVASHTLNYGHIVDP 60 Query: 56 LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 + +LD+ ++ SP++FT ED E + HGGIAV N IL+ LA R+A PGEF++ Sbjct: 61 QNQEVLDEVMIGAMRSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARMAEPGEFTK 119 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG++DL +AE++ D+I ++T+ +++ + G LS+L ++ + + +E + Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQEILNTLAQVEVN 179 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +D+ E +DV+ +++ + + ++S ++ + G+I+R G I+G N GKSSL Sbjct: 180 IDYPEYDDVEEMTTQLMREKTAEFEELLTSLLNTARRGKILREGISTAIIGRPNVGKSSL 239 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N L ++D AIVTDI GTTRDV+ ++++G +K+ DTAGIRETDD+VE+ G++R+ Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEQIGVERSKKA 299 Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------I 343 ++ ADL+LL+ + K+ + ++ + I + K+DL E D L I Sbjct: 300 LQEADLVLLVLNASEPLTDQDKQLLEISQDSNRIVLLNKTDLEEKI--ELDQLPTDIIKI 357 Query: 344 SSFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDC 400 S + ++++ +I + + + + S+ RH+ + + + L+ + E Sbjct: 358 SVLHNQNIDKIEERINQLFFENAGIVEQDATYLSNARHISLIEKALESLQAVNQGLEMGM 417 Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ ++ LG+ITG ++L+ +FS+FC+GK Sbjct: 418 PVDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 457 >gi|320040661|gb|EFW22594.1| mitochondrial GTPase [Coccidioides posadasii str. Silveira] Length = 481 Score = 216 bits (550), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 126/332 (37%), Positives = 186/332 (56%), Gaps = 36/332 (10%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGL-----DGRI 60 TI+A+ST +AI+I+R+SGP+C QV + +C P PR A+LR + Sbjct: 60 TIYALSTAPGRAAIAIVRVSGPACIQVYKGLCPGSPLPKPRYATLRTLCDPTQSPSSNAV 119 Query: 61 LDKGLLIV-FPSPESFTGEDSAEFHVHGGIAVVNGILEELAKM----------PNLRLAN 109 LD G L++ FP+P++ TGED E H+HG AV+ +L + K +R A Sbjct: 120 LDSGALVLYFPAPKTVTGEDVLELHIHGSPAVIKAVLNAIPKCLENKIETGLESCIRYAE 179 Query: 110 PGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR 169 PGEF+RRAF N ++DL + E+L + ++++TE QRRL++ G S LS+ Y W +L + R Sbjct: 180 PGEFTRRAFLNDRLDLPQIEALGNTLAADTEQQRRLAIRGTSDTLSARYENWRQQLLYAR 239 Query: 170 SFIEADLDFSEE----EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVIL 225 +EA +DFSE+ E V +F V + L N I HI GE++R+G KI +L Sbjct: 240 GELEALIDFSEDQHFDESVDDFMIS-VTGQVRKLLNQIDVHIENASKGELLRSGIKIALL 298 Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI-- 283 G NAGKSSL N + ++ AIV+ GTTRD++ + +DL G+L K D AG+R Sbjct: 299 GAPNAGKSSLLNRIVGREAAIVSSEEGTTRDIVDVGVDLGGWLCKFGDMAGLRSAPPKLI 358 Query: 284 ------------VEKEGIKRTFLEVENADLIL 303 VE+EGI+R +DL++ Sbjct: 359 GEERKDSTVIGEVEREGIRRAKARALESDLVI 390 >gi|300814730|ref|ZP_07094978.1| tRNA modification GTPase TrmE [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511117|gb|EFK38369.1| tRNA modification GTPase TrmE [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 459 Score = 216 bits (550), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 157/459 (34%), Positives = 261/459 (56%), Gaps = 28/459 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKAS--LRYFFGL---DGRI 60 +TI A+ST + I+I+R SG + ++ + I K K K S ++ +G + +I Sbjct: 5 DTIAAISTAVGEAGIAIVRTSGDNSVEIVDKIFKAKSKKKLKDSENRKFIYGHIYDNDKI 64 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+ L + P S++GE+ E H HGGI V IL L RLA GEF++R F N Sbjct: 65 IDEVLAVKMLGPHSYSGENIVEIHCHGGIVAVRRILN-LLLANGARLAQKGEFTKRGFLN 123 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G+IDL +AE++ DLI ++TE +SM+ + G +S + L +++ I A++DF E Sbjct: 124 GRIDLSQAEAVIDLIKAKTEDSFDISMKQLKGSISKEVEKIEKNLVGMQALIVANIDFPE 183 Query: 181 EEDVQNFSSKEV--LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 +E V++ + E+ ND + L +I ++ G+++R G +ILG N GKSSL N Sbjct: 184 DE-VEDATYDELKRRNDEITL--NIRELLNNAGRGKLLREGINTLILGKPNVGKSSLLNG 240 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 + K + AIVTDIPGTTRD + ++L+G L+K++DTAGIR+TDD VEK G+K +++ Sbjct: 241 MLKYERAIVTDIPGTTRDTIEDYINLDGLLLKVTDTAGIRQTDDEVEKIGVKIARDKIKE 300 Query: 299 ADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEE--------YDHL-I 343 ADL++++ ++ + ++ + +N +FI K DL + ++E D+L + Sbjct: 301 ADLVIVIFDLSRPFNKDDREILDLIQNKKALFIMNKDDLQARVSDEDIKELLNDRDYLKL 360 Query: 344 SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCG 401 S E ++ + N IK + S + + ++ RH+ L + ++ +E L+ E + Sbjct: 361 SVRNPEEIKLVENAIKDMFFSGEIIQKDQVYVNNIRHIDALKKALKTMEETRLDLENEVF 420 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LD++ NL A + KITG + E +LD +FS+FCIGK Sbjct: 421 LDLVEVNLEEALEEISKITGEITTEDVLDRVFSEFCIGK 459 >gi|86130381|ref|ZP_01048981.1| tRNA modification GTPase, ThdF family [Dokdonia donghaensis MED134] gi|85819056|gb|EAQ40215.1| tRNA modification GTPase, ThdF family [Dokdonia donghaensis MED134] Length = 462 Score = 216 bits (550), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 161/467 (34%), Positives = 254/467 (54%), Gaps = 39/467 (8%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK--KKPFPRKASLRYFFG--LDG-R 59 ++TI A+++ A AI++IR+SGP +C I K K + + G +DG R Sbjct: 4 QDTIVALASPAGAGAIAVIRVSGPESLAICSPIFKSVSGKVLANQKTHTIHLGHIMDGQR 63 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 +D+ L+ +F S+TGE + E HG + I++ L + R A GEF+ R+F Sbjct: 64 TIDEVLVSLFKGTNSYTGEPTVEISCHGSSYIQQEIIQLLLR-SGCRAAKAGEFTLRSFI 122 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NGK+DL +AE++ADLI+S+ E +++M+ M G S+ Q +L + S IE +LDFS Sbjct: 123 NGKMDLSQAEAVADLIASDNEGAHQIAMQQMRGGFSNEIAQLRQELLNFASLIELELDFS 182 Query: 180 EEEDVQNFSSKEVLNDIL-----FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234 EE DV+ F+ + D++ LK I S + G +I+NG + I+G N GKS+ Sbjct: 183 EE-DVE-FADRTQFKDLIARITKVLKRLIDSFAT----GNVIKNGIPVAIVGEPNVGKST 236 Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294 L NAL ++ AIV+DI GTTRD + +L + G + DTAGIRET+D++E GIK+TF Sbjct: 237 LLNALLNEERAIVSDIAGTTRDTIEDELSIGGIGFRFIDTAGIRETEDVIEGLGIKKTFE 296 Query: 295 EVENADLILLL--------KEINSKKEISFPKNI----DFIFIGTKSDLYS-TYTEEYD- 340 +++ A +++LL + + K EI KN + + K D S T E Sbjct: 297 KIKQAQVVVLLHTASEVIHQTASVKLEIEKIKNQFPLKPLLVVANKIDALSPTELNEIAT 356 Query: 341 -----HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL 395 HL+S+ +G++ L NK+ ++ + +I ++ RH L + + +E Sbjct: 357 KIDNLHLLSAKENQGVDALKNKLLDFVNTGALRNDETIVTNSRHYDALLKALEEIEKVQY 416 Query: 396 NEKDCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D GL D++A ++R A G+ITG V ++LL IF+ FCIGK Sbjct: 417 G-LDTGLSGDLMAIDIREALYHFGEITGQVTNDELLGNIFANFCIGK 462 >gi|257878640|ref|ZP_05658293.1| tRNA modification GTPase mnmE [Enterococcus faecium 1,230,933] gi|257881306|ref|ZP_05660959.1| tRNA modification GTPase mnmE [Enterococcus faecium 1,231,502] gi|257893099|ref|ZP_05672752.1| tRNA modification GTPase mnmE [Enterococcus faecium 1,231,408] gi|258615276|ref|ZP_05713046.1| tRNA modification GTPase TrmE [Enterococcus faecium DO] gi|260558221|ref|ZP_05830417.1| tRNA modification GTPase mnmE [Enterococcus faecium C68] gi|293563245|ref|ZP_06677697.1| tRNA modification GTPase TrmE [Enterococcus faecium E1162] gi|293569165|ref|ZP_06680471.1| tRNA modification GTPase TrmE [Enterococcus faecium E1071] gi|294619739|ref|ZP_06699144.1| tRNA modification GTPase TrmE [Enterococcus faecium E1679] gi|294623753|ref|ZP_06702581.1| tRNA modification GTPase TrmE [Enterococcus faecium U0317] gi|257812868|gb|EEV41626.1| tRNA modification GTPase mnmE [Enterococcus faecium 1,230,933] gi|257816964|gb|EEV44292.1| tRNA modification GTPase mnmE [Enterococcus faecium 1,231,502] gi|257829478|gb|EEV56085.1| tRNA modification GTPase mnmE [Enterococcus faecium 1,231,408] gi|260075395|gb|EEW63701.1| tRNA modification GTPase mnmE [Enterococcus faecium C68] gi|291588134|gb|EFF19976.1| tRNA modification GTPase TrmE [Enterococcus faecium E1071] gi|291594009|gb|EFF25478.1| tRNA modification GTPase TrmE [Enterococcus faecium E1679] gi|291596707|gb|EFF27930.1| tRNA modification GTPase TrmE [Enterococcus faecium U0317] gi|291604784|gb|EFF34266.1| tRNA modification GTPase TrmE [Enterococcus faecium E1162] Length = 465 Score = 216 bits (550), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 154/469 (32%), Positives = 265/469 (56%), Gaps = 42/469 (8%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC----KKKKPFPRKASLRYFFGLD-- 57 E +TI A+ST AISI+RLSG Q+ + + K+ P ++ Y +D Sbjct: 7 EFDTIAAISTPPGEGAISIVRLSGDQAVQLADKVYQSGNKRLSEVPSH-TIHYGHIVDPK 65 Query: 58 -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 +++D+ ++ V +P++FT ED E + HGGI VVN IL+ L + RLA PGEF++R Sbjct: 66 SNQLVDEVMVSVMRAPKTFTREDVVEINCHGGIVVVNQILQLLLR-EGARLAEPGEFTKR 124 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NG++DL +AE++ DLI ++T+ L++ + G LS+L ++ + +E ++ Sbjct: 125 AFLNGRVDLSQAEAVMDLIRAKTDKAMGLALNQLDGNLSALIRSLRQEILETLAQVEVNI 184 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D+ E +DV+ ++K +L ++ I + ++ K G+++R G I+G N GKSSL Sbjct: 185 DYPEYDDVEELTTKLLLEKAQMIQQRIQALLATSKQGKVLREGLSTAIIGRPNVGKSSLL 244 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N L +++ AIVTDI GTTRDV+ +++ G +K+ DTAGIRET+D+VE+ G++R+ + Sbjct: 245 NHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSRKAL 304 Query: 297 ENADLILLL----KEINSKKE--ISFPKNIDFIFIGTKSDLYSTYTEE-YDHL------- 342 ADLILL+ + + ++ E + + I + K+DL + +E L Sbjct: 305 AEADLILLVLNQSEPLTAEDEQLLEATSGLKRIILLNKTDLPAQLEQEKLKKLIENEPVF 364 Query: 343 -ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT--VRYLEMASLNEK- 398 IS +GL ++++S +S+ F FS + +R ++S T + LE ASL+ + Sbjct: 365 SISVAKNDGL----DRLESAISDLF----FSGETGERDATYVSNTRHIALLEKASLSLEE 416 Query: 399 -----DCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D G+ D++ ++ LG++ G ++L+ +FS+FC+GK Sbjct: 417 VIAGIDSGMPVDLVQIDMTRCWDYLGEVVGDSVQDELITQLFSQFCLGK 465 >gi|119467792|ref|XP_001257702.1| mitochondrial GTPase (Mss1), putative [Neosartorya fischeri NRRL 181] gi|119405854|gb|EAW15805.1| mitochondrial GTPase (Mss1), putative [Neosartorya fischeri NRRL 181] Length = 604 Score = 216 bits (550), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 126/313 (40%), Positives = 184/313 (58%), Gaps = 29/313 (9%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRK--ASLRYFFGLD-----GR 59 TI+A+ST +AI+++R+SG +C Q+ +C P PR A++R + Sbjct: 66 TIYALSTAPGRAAIAVVRVSGSACVQIYRALCPSA-PLPRARVAAVRTLYDPTQEPSANT 124 Query: 60 ILDKGLLIV-FPSPESFTGEDSAEFHVHGGIAVVNGILEELAK--MPN--LRLANPGEFS 114 +LD G L++ FP P++ TGED E H+HGG A+V +L +A+ P +R A PGEF+ Sbjct: 125 VLDAGALVLYFPGPKTVTGEDVLELHLHGGPAIVKSVLAAIARSNRPESLVRYAEPGEFT 184 Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174 RRAF N ++DL + E+L D ++++TE QRRL++ G S LS Y W +L + R +EA Sbjct: 185 RRAFMNNRLDLPQIEALGDTLTADTEQQRRLAVRGASDALSRRYESWRQQLLYARGELEA 244 Query: 175 DLDFSEE----EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNA 230 +DFSE+ E + F + V + L+ + HI GE++RNG KI +LG NA Sbjct: 245 LIDFSEDQYFDESPEEFV-RSVAGQVRALQTQLRLHIENASKGELLRNGIKIALLGAPNA 303 Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---------ETD 281 GKSSL N + K+ AIV+ GTTRD++ + +DL G+ K+ D AGIR ET Sbjct: 304 GKSSLLNRIVGKEAAIVSTEEGTTRDIVDVGVDLGGWYCKLGDMAGIRSEKSASTGQETA 363 Query: 282 DI--VEKEGIKRT 292 I VEKEGI+R Sbjct: 364 VIGAVEKEGIRRA 376 >gi|256370677|ref|YP_003108502.1| tRNA modification GTPase TrmE [Candidatus Sulcia muelleri SMDSEM] gi|256009469|gb|ACU52829.1| tRNA modification GTPase TrmE [Candidatus Sulcia muelleri SMDSEM] Length = 461 Score = 216 bits (550), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 163/467 (34%), Positives = 256/467 (54%), Gaps = 33/467 (7%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFI---CKKKKPFPRKASLRYFFGLD 57 M EK+TI A++T + AI++IR+SG + ++ I KK + F + Sbjct: 1 MLKEKDTIVAIATPSGYGAIAVIRMSGKNSLKIINNIFVSISLKKKLSENSINLGFIKIK 60 Query: 58 GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 +I+DK L++VF P+S+TGED E HG + + N IL + RLANPGEF+ RA Sbjct: 61 KKIIDKVLILVFKKPKSYTGEDVVEISCHGSMYIQNKILSIIID-QGARLANPGEFTLRA 119 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NGKIDL +AES+ D+++SET L++ M G +S++ K+ + S IE +LD Sbjct: 120 FINGKIDLCQAESILDIVNSETLFSHELAINQMRGNISNIIKNLRKKIIDLLSLIELELD 179 Query: 178 FSEEE--DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 FSEE + +++L++I+ ND+ I K+G ++NG + I+G +N GKS+L Sbjct: 180 FSEENLFVLNKREFQKILDNIIKKINDL---IKSFKIGNALKNGILVSIIGCTNVGKSTL 236 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RETDDIVEKEGIKRTFL 294 FN + K + +IV++I GTTR+ + +L + G + DTAGI +T D +EK GIK+T+ Sbjct: 237 FNKILKDERSIVSNIAGTTRNYIEENLIINGIKFRFIDTAGINNKTKDYIEKLGIKKTYK 296 Query: 295 EVENADLIL----------LLKEINSKKEISFPKNIDFIFIG--------TKSDLYSTYT 336 ++ +DLIL ++K + S +E +PK FI I K Y Sbjct: 297 NIKKSDLILYVFDCLNEEIIMKNLKSLQE-KYPKKKIFILINKYDLIKKNKKKINLRNYQ 355 Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS--IPSHKRHLYHLSQTVRYLEMAS 394 ++ IS+ G G++ L+++I + S K L + I + RH +L + + YL Sbjct: 356 DKDIFHISAKYGYGIKNLLDEI-TFFSKKITSLKENSIIITQTRHYENLKKAIFYLYKVK 414 Query: 395 LN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + EK + + +L+ A LG+I G V E +L IFSKFCIGK Sbjct: 415 EDLEKSISPEFLYISLQTALECLGQIIGEVTNEDILSNIFSKFCIGK 461 >gi|229035142|ref|ZP_04189088.1| tRNA modification GTPase mnmE [Bacillus cereus AH1271] gi|228728208|gb|EEL79238.1| tRNA modification GTPase mnmE [Bacillus cereus AH1271] Length = 458 Score = 216 bits (550), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 147/459 (32%), Positives = 253/459 (55%), Gaps = 24/459 (5%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLD---G 58 E +TI A+ST AI+I+R+SG + I K K P ++ Y +D Sbjct: 2 EFDTIAAISTALGEGAIAIVRVSGDDAVEKVNRIFKGKDLTEVPSH-TIHYGHIVDLDTN 60 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 +++++ ++ + +P +FT E+ E + HGG+ VN +L+ L +RLA PGEF++RAF Sbjct: 61 QVIEEVMVSILRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAF 119 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG+IDL +AE++ DLI ++T+ +++ M G LS L G+ + + +E ++D+ Sbjct: 120 LNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGRLRQDILETLAHVEVNIDY 179 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E +DV+ + ++ ++ +I+ + K G+I+R G I+G N GKSSL N+ Sbjct: 180 PEYDDVEEMTHNILIEKATHVRAEIAKILETSKQGKILREGIATAIIGRPNVGKSSLLNS 239 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L ++ AIVTDI GTTRDV+ +++ G +K+ DTAGIRET+D+VE+ G++R+ + Sbjct: 240 LVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSKEMMSQ 299 Query: 299 ADLILLL----KEINSKKEISFP--KNIDFIFIGTKSDLYSTYTEEY-------DHLISS 345 ADL+L++ + + ++ E F + DFI I K+DL T E + +I++ Sbjct: 300 ADLVLVVVNYSEALTNEDEDLFRAVQGKDFIVIVNKTDLPQTIDMERVTELAAGNRVITT 359 Query: 346 --FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCG 401 +G++EL I + + S+ RH+ L+Q + + + E Sbjct: 360 SLIEEQGIDELEKAIADLFFEGAIDSADVTYVSNARHIGLLTQAGKTIGDAIEAIENGVP 419 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+ITG E L+D +FS+FC+GK Sbjct: 420 IDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458 >gi|15828484|ref|NP_325844.1| tRNA modification GTPase TrmE [Mycoplasma pulmonis UAB CTIP] gi|21363023|sp|Q98RJ5|MNME_MYCPU RecName: Full=tRNA modification GTPase mnmE gi|14089426|emb|CAC13186.1| THIOPHENE AND FURAN OXIDATION PROTEIN THDF [Mycoplasma pulmonis] Length = 442 Score = 216 bits (550), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 155/456 (33%), Positives = 247/456 (54%), Gaps = 37/456 (8%) Query: 6 ETIFAVSTGA-LPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRY-FFGLDGRILDK 63 + I A+S+GA + AISIIRLSGP F++ + I K + S+ Y + D I+D+ Sbjct: 3 DNIVAISSGAKVNQAISIIRLSGPDVFEIMKKIFTGK--VGKDKSITYGYIKNDQEIIDE 60 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 L++ F P +F GED+ E + HGGI V ILE + RLA PGEFS+RAF NGK+ Sbjct: 61 VLVMWFKGPNNFVGEDTVEINAHGGIVVSTLILETIV-ANGARLAEPGEFSKRAFLNGKL 119 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL++AE++ DLI S+T Q +++++ + S I+KL I E ++D+ E +D Sbjct: 120 DLVKAEAINDLIHSKTVQQAKINIKKFDRKTSMFINDLINKLVFIIGTCEVNIDYPEYDD 179 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 ++ + + +L + L+ +IS + + I N I I+G N GKSSL NAL ++D Sbjct: 180 IEELTLEVLLPKLKDLEKEISKAVELSERSRIYFNEIPIAIVGRPNVGKSSLLNALLEED 239 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303 +IVT+I GTTRDV+ L G + DTAGIR +++++EK GI+++F +++++++I+ Sbjct: 240 KSIVTNIEGTTRDVVEARFVLNGINFLLKDTAGIRHSENVIEKIGIEKSFKQIQDSEIII 299 Query: 304 LLKEINSKKEISFPKNI-------DFIFIGTKSDLYSTYTEEYDHL-ISSFTGEGLEELI 355 L + ++ E F + I +I + K DL S + D + IS+ GE Sbjct: 300 HLV-LENQDEDDFERKIKELSEGKKYIRVINKKDLISKDKIKKDQIYISALKGE------ 352 Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-----SLNEKDCGL------DI 404 +S K + F + + + Q R L + S+ E GL D+ Sbjct: 353 ------ISELEKAILFEYQNIDLDDFRMIQNTRQLALIKSSLFSIQEAIKGLEQGYTPDV 406 Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + ++ A L I G D E+LLD +FS FC+GK Sbjct: 407 VIVDITKAWEDLVNIVGRADNEKLLDSMFSNFCLGK 442 >gi|171779779|ref|ZP_02920735.1| hypothetical protein STRINF_01616 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281881|gb|EDT47315.1| hypothetical protein STRINF_01616 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 457 Score = 216 bits (550), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 153/469 (32%), Positives = 260/469 (55%), Gaps = 42/469 (8%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---- 56 + E +TI A+ST AI I+RLSG + + + + K + AS +G Sbjct: 2 ITKEFDTIAAISTPLGEGAIGIVRLSGTDALAIAQKVYRGKD-LSKVASHTINYGHIVDP 60 Query: 57 -DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 + ILD+ ++ V +P++FT E+ E + HGG+AV N IL+ L + RLA PGEF++ Sbjct: 61 DNDEILDEVMVSVMLAPKTFTRENVIEINTHGGVAVTNEILQLLLRQ-GARLAEPGEFTK 119 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG++DL +AE++ D+I ++T+ ++++ + G LS L ++ + + +E + Sbjct: 120 RAFLNGRVDLTQAEAIMDIIRAKTDKAMNIAVKQLDGSLSKLINDTRQEILNTLAQVEVN 179 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +D+ E +DV+ ++ + + + + ++ K G+I+R G I+G N GKSSL Sbjct: 180 IDYPEYDDVEEMTTALIREKTQEFQTLLENLLATAKRGKILREGLSTAIIGRPNVGKSSL 239 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N L ++D AIVTDI GTTRDV+ ++++G +K+ DTAGIRETDD+VEK G++R+ Sbjct: 240 LNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLVDTAGIRETDDVVEKIGVERSKKA 299 Query: 296 VENADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTYTEEYDHL----- 342 +E ADL+LL+ +NS + ++ K+ + I + K+DL E D L Sbjct: 300 LEEADLVLLV--LNSSEPLTDQDRALLELSKDSNRIILLNKTDLPEKI--EADELPDDVI 355 Query: 343 -ISSFTGEG---LEELINKI----KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS 394 IS + +EE IN++ I+ L S+ RH+ + + V+ L+ S Sbjct: 356 RISVLKNQNIDLIEERINQLFFDNAGIVEKDATYL-----SNARHIGLIEKAVQSLQ--S 408 Query: 395 LNE---KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +NE +D++ +L LG+ITG ++L+ +F++FC+GK Sbjct: 409 VNEGLKAGMPVDLLQIDLTRCWEILGEITGEAAPDELITKLFTQFCLGK 457 >gi|254369611|ref|ZP_04985622.1| hypothetical protein FTAG_01502 [Francisella tularensis subsp. holarctica FSC022] gi|157122565|gb|EDO66700.1| hypothetical protein FTAG_01502 [Francisella tularensis subsp. holarctica FSC022] Length = 450 Score = 216 bits (550), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 157/465 (33%), Positives = 253/465 (54%), Gaps = 43/465 (9%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62 + K+TI A++T I IIR+SG + E + KK+ PR A+ + D I+D Sbjct: 2 YTKDTIVAIATPQGNGGIGIIRISGIDALAIAEKLTKKQLK-PRYATFCNVYN-DNEIID 59 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 G++I F +P S+TGED E HG ++N I++ A R+A GEF+ RAF N K Sbjct: 60 HGIVIFFKAPLSYTGEDVVEIQAHGNPFILNLIIKA-ALNCGARMAKAGEFTERAFLNNK 118 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 +DL +AE++AD+I++ +E+ + + + + G+ S ++KL ++R ++EA +DF EEE Sbjct: 119 LDLAQAEAVADIINASSEIAAKSAAKSLQGDFSKEINNLLEKLIYLRMYLEASIDFPEEE 178 Query: 183 -----DVQNFSS-KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D + SS +E+ IL +KN K G I+ G ++++G NAGKSSL Sbjct: 179 INFLEDQKIHSSLEEIYKVILAIKNSC-------KQGVILAEGITLILVGKPNAGKSSLL 231 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 NALA K+ AIVT I GTTRD++ + + G + I DTAG+R +DDI+E EGIKR ++ Sbjct: 232 NALAGKESAIVTSIAGTTRDIVKEHIQINGVPMHIIDTAGLRNSDDIIESEGIKRAIKKI 291 Query: 297 ENADLILLLKEINSKKEISF--------------PKNIDFIFIGTKSDLYSTYTEEY-DH 341 + AD +L + + + ++ F PK+ID ++ K DL + +H Sbjct: 292 QEADQVLFVTDDYTNSQVKFSDIKEIIPEFYDQIPKDIDITYVHNKIDLLKEVPHNHANH 351 Query: 342 L-ISSFTGEGL----EELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMASL 395 + IS+ G+ E ++NK+ N+ SI + +RH+ ++ ++++A Sbjct: 352 IYISAENNIGIDKLKEHILNKVGYTNQNE------SIYTARERHVTAINNAFEHIKLAKE 405 Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + +++AE L + L ITG + LL IFS FCIGK Sbjct: 406 QLELGNGELLAEELLIVQEYLNSITGEFSSDDLLGEIFSSFCIGK 450 >gi|255690104|ref|ZP_05413779.1| tRNA modification GTPase TrmE [Bacteroides finegoldii DSM 17565] gi|260624386|gb|EEX47257.1| tRNA modification GTPase TrmE [Bacteroides finegoldii DSM 17565] Length = 466 Score = 216 bits (550), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 164/469 (34%), Positives = 250/469 (53%), Gaps = 39/469 (8%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP---FPRKASLRYFFG--LDG- 58 ++TI A++T A AI IR+SGP + I K KP F + FG DG Sbjct: 4 QDTICAIAT-AQGGAIGSIRVSGPEAISITSLIFKPAKPDKLFSDQKPYSLTFGRIYDGD 62 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 I+D+ L+ +F +P S+TGEDS E HG ++ +L+ L K R+A PGE+++RAF Sbjct: 63 EIIDEVLVSLFRTPHSYTGEDSTEITCHGSSYILQQVLQLLIK-KGCRMAQPGEYTQRAF 121 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NGK+DL +AE++ADLI+S + RL+M M G S +KL + S IE +LDF Sbjct: 122 LNGKMDLSQAEAVADLIASSSAATHRLAMSQMRGGFSKELTDLRNKLLNFTSMIELELDF 181 Query: 179 SEEEDVQNFSSKEVLNDIL-FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 SEE DV+ F+ + L + ++ IS + +G I++G + I+G +NAGKS+L N Sbjct: 182 SEE-DVE-FADRSALKKLADEIEQVISRLVQSFNVGNAIKSGVPVAIIGETNAGKSTLLN 239 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 L +D AIV+DI GTTRDV+ + + G + DTAGIRET+D +E GI+RTF ++E Sbjct: 240 VLLNEDKAIVSDIHGTTRDVIEDTISIGGVTFRFIDTAGIRETNDKIESLGIERTFQKLE 299 Query: 298 NADLIL-LLKEIN--------SKKEISFPKNIDFIFIGTKSDLYSTYTE-EYDHLISSFT 347 A+++L ++ +N SKK I + I + K+DL + L+ +F Sbjct: 300 QAEIVLWMVDSVNAASQIEQLSKKIIPRCEGKHLIVVFNKADLIEDVQKSNLSALLENFP 359 Query: 348 GEGLEEL---------INKIKSILSNKFKKLPF-----SIPSHKRHLYHLSQTVRYLEMA 393 E E + N+++ +L N LP I ++ RH LS+ + + Sbjct: 360 QESTEHIYISAKRRENTNELQKMLINA-AHLPTVTQNDVIVTNVRHYEALSKALDAIHRV 418 Query: 394 SLNEKDCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 N D L D +++++R + I G V + +L IF FCIGK Sbjct: 419 Q-NGLDSHLSGDFLSQDIRECIFFISDIAGEVTNDMVLQNIFQHFCIGK 466 >gi|315045147|ref|XP_003171949.1| tRNA modification GTPase mss1 [Arthroderma gypseum CBS 118893] gi|311344292|gb|EFR03495.1| tRNA modification GTPase mss1 [Arthroderma gypseum CBS 118893] Length = 643 Score = 216 bits (550), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 120/291 (41%), Positives = 177/291 (60%), Gaps = 20/291 (6%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGL-----DGRI 60 TI+A+ST + +AI+IIR+SGP C + + +C + P PR A+LR + I Sbjct: 94 TIYALSTASGRAAIAIIRVSGPDCISIYKALCPNRNLPKPRFAALRTLYEPGKPVSTNNI 153 Query: 61 LDKGLLIV-FPSPESFTGEDSAEFHVHGGIAVVNGILEELAK--------MPNLRLANPG 111 LD G L+ FP+P + TGED E HVHG AV+ IL + K + ++R A PG Sbjct: 154 LDSGALVFHFPAPNTVTGEDVLELHVHGSPAVIKSILSAIPKCASSGGVPLASIRYAEPG 213 Query: 112 EFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSF 171 EF+RRAF N ++DL + E+L + ++++TE QRRL++ G + LS+ Y QW +L + R Sbjct: 214 EFTRRAFLNDRLDLPQIEALGNTLAADTEQQRRLAIRGTNDTLSTRYEQWRKQLLYARGE 273 Query: 172 IEADLDFSEE----EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227 +EA +DFSE+ E V++F S V + L I+ HI GE++RNG K+ +LG Sbjct: 274 LEALIDFSEDQHFDESVEDFISS-VTVQVHNLLRQINLHIKNASKGELLRNGIKVALLGA 332 Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 NAGKSSL N + ++ AIV+ GTTRD++ + +DL G+L K D AG+R Sbjct: 333 PNAGKSSLLNQIVGREAAIVSSEEGTTRDIVDVGVDLGGWLCKFGDMAGLR 383 >gi|303322326|ref|XP_003071156.1| GTPase family protein [Coccidioides posadasii C735 delta SOWgp] gi|240110855|gb|EER29011.1| GTPase family protein [Coccidioides posadasii C735 delta SOWgp] Length = 628 Score = 216 bits (550), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 128/332 (38%), Positives = 188/332 (56%), Gaps = 36/332 (10%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGL-----DGRI 60 TI+A+ST +AI+I+R+SGP+C QV + +C P PR A+LR + Sbjct: 60 TIYALSTAPGRAAIAIVRVSGPACIQVYKGLCPGSPLPKPRYATLRTLCDPTQSPSSNAV 119 Query: 61 LDKGLLIV-FPSPESFTGEDSAEFHVHGGIAVVNGILEELAKM----------PNLRLAN 109 LD G L++ FP+P++ TGED E H+HG AV+ +L + K +R A Sbjct: 120 LDSGALVLYFPAPKTVTGEDVLELHIHGSPAVIKAVLNAIPKCLENKIETGLESCIRYAE 179 Query: 110 PGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR 169 PGEF+RRAF N ++DL + E+L + ++++TE QRRL++ G S LS+ Y W +L + R Sbjct: 180 PGEFTRRAFLNDRLDLPQIEALGNTLAADTEQQRRLAIRGTSDTLSARYENWRQQLLYAR 239 Query: 170 SFIEADLDFSEE----EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVIL 225 +EA +DFSE+ E V +F V + L N I HI GE++R+G KI +L Sbjct: 240 GELEALIDFSEDQHFDESVDDFMIS-VTGQVRKLLNQIDVHIENASKGELLRSGIKIALL 298 Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR------- 278 G NAGKSSL N + ++ AIV+ GTTRD++ + +DL G+L K D AG+R Sbjct: 299 GAPNAGKSSLLNRIVGREAAIVSSEEGTTRDIVDVGVDLGGWLCKFGDMAGLRSAPPKLI 358 Query: 279 --ETDDI-----VEKEGIKRTFLEVENADLIL 303 E D VE+EGI+R +DL++ Sbjct: 359 GEERKDSTVIGEVEREGIRRAKARALESDLVI 390 >gi|81300391|ref|YP_400599.1| tRNA modification GTPase TrmE [Synechococcus elongatus PCC 7942] gi|93141330|sp|Q8KPU2|MNME_SYNE7 RecName: Full=tRNA modification GTPase mnmE gi|81169272|gb|ABB57612.1| tRNA modification GTPase trmE [Synechococcus elongatus PCC 7942] Length = 462 Score = 216 bits (550), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 150/462 (32%), Positives = 246/462 (53%), Gaps = 33/462 (7%) Query: 6 ETIFAVSTGALPS--AISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL----- 56 +TI A++T +P ++ I+RLSG + ++ F ++P+ S R +G Sbjct: 7 DTIAAIATAIVPQQGSVGIVRLSGAAATEIARQIFQIAGQQPWE---SHRILYGYIRDPE 63 Query: 57 DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 GR++D+ LL+ +P S+T ED E H HGG+ V L+ L RLA PGEF+ R Sbjct: 64 SGRLVDEALLLPMLAPRSYTREDVVELHCHGGLMPVQQTLQ-LCIRAGARLAEPGEFTLR 122 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NG++DL +AES+ADLIS+++ + ++ + G+L Q D+ I + +EA + Sbjct: 123 AFLNGRLDLSQAESIADLISAQSPQAAQAALGSLQGKLGHPIRQLRDRCLDILAEVEARI 182 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 DF E+D+ + + + D+ + +S GE++R G KI I+G N GKSSL Sbjct: 183 DF--EDDLPPLDLEAIAAQLTAAGADMQAILSTADRGELLRTGLKIAIVGRPNVGKSSLL 240 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 NA ++ D AIVTD+PGTTRD++ L + G V++ DTAGIRET D VE+ G++R+ Sbjct: 241 NAWSRCDRAIVTDLPGTTRDLVESQLIVGGIPVQVLDTAGIRETSDQVEQIGVERSRRAA 300 Query: 297 ENADLILLLKEIN---SKKEISFPKNID---FIFIGTKSDLYSTY--------TEEYDHL 342 ++ADL+LL + + S ++ + + + + + K D S +E+ + Sbjct: 301 QSADLVLLTIDASAGWSAEDQTIWEAVSDRPILLVINKRDRLSEAERHAIALPQQEFKAI 360 Query: 343 ISSFTG--EGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EK 398 + + +G+E+L I ++ + + ++R + L+ L + Sbjct: 361 VWTAAAQQQGIEDLEAAILAAVGTGDLTSANWDWALNQRQVAALTTAQTALRRVEETLQA 420 Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LD +LR A +LG ITG E +LD+IFS+FCIGK Sbjct: 421 QLPLDFWTIDLREAIAALGSITGEEIAESMLDLIFSRFCIGK 462 >gi|329768091|ref|ZP_08259600.1| tRNA modification GTPase mnmE [Gemella haemolysans M341] gi|328838246|gb|EGF87858.1| tRNA modification GTPase mnmE [Gemella haemolysans M341] Length = 460 Score = 216 bits (549), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 155/472 (32%), Positives = 254/472 (53%), Gaps = 51/472 (10%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK--KKKPFPRKASLRYFFG-----LDG 58 ETI A+ST AI I+RLSG F + E I + K K AS +G Sbjct: 3 ETICAISTALGEGAIGIVRLSGDEAFSIAEKIVRLPKGKTVESLASHTINYGNVVDPTTN 62 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 +++ +L+ P ++T ED E + HGGI + +L L R+A PGEF++RAF Sbjct: 63 EKIEEIMLVKMVGPRTYTTEDVIEINCHGGIVTIQKVLA-LCLEHGARMAEPGEFTKRAF 121 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG+IDL +AE++ D I S+T+ +++ M G LS+L + ++ I + +E ++D+ Sbjct: 122 LNGRIDLTQAEAVIDFIKSKTDEASQIANNQMQGRLSTLIKRLRTEILDILTVVEVNIDY 181 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E +D++ ++K +L ++N + S + K G+II+ G I+G N GKSSL N Sbjct: 182 PEYDDLEIETTKTILEKSTSIRNSLESLLETSKQGKIIKEGINTAIIGRPNVGKSSLLNN 241 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L +++ AIVTDI GTTRDVL ++++G +K+ DTAGIRETDDIVE+ G+KR+ +E Sbjct: 242 LLQENKAIVTDIAGTTRDVLEEYVNIKGVPIKLIDTAGIRETDDIVEQIGVKRSKEALEK 301 Query: 299 ADLILLLKEINSKKEISFPKN--------------IDFIFIGTKSDLYSTYTEEYDHLI- 343 ADL+L L +NS +E++ ++ + + TK D+ Y+H I Sbjct: 302 ADLVLFL--LNSSEELTEDDKELLKLTEGKTTIVILNKLDLETKIDIAEVEKLAYNHPII 359 Query: 344 --SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR----YLEMASLNE 397 S T +G++EL I+ + F + + +LS T + +ASLN+ Sbjct: 360 KTSMTTYKGIDELEKNIRDLF--------FGGAARPKDATYLSNTRQINLIQRALASLND 411 Query: 398 ----KDCGLDIIAENLRLASVS-----LGKITGCVDVEQLLDIIFSKFCIGK 440 + GL++ ++ L + LG++ G ++L++ +FS+FC+GK Sbjct: 412 AIGAAELGLEV---DMVLIDYTNTFNLLGEVIGENSGDELINELFSRFCLGK 460 >gi|326202766|ref|ZP_08192633.1| tRNA modification GTPase TrmE [Clostridium papyrosolvens DSM 2782] gi|325986843|gb|EGD47672.1| tRNA modification GTPase TrmE [Clostridium papyrosolvens DSM 2782] Length = 460 Score = 216 bits (549), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 157/466 (33%), Positives = 250/466 (53%), Gaps = 35/466 (7%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LDGR- 59 H ++TI A+ST I +IR+SG F + I K K S +G +D Sbjct: 2 HNEDTIAALSTPYGTGGIGVIRISGEKAFSTADKIFKASKAMEEIQSHTVTYGKIVDKES 61 Query: 60 --ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 I+D+ LL+ P +FT ED E HGGI V+N +L+ + K +R A PGEF++RA Sbjct: 62 KDIIDEVLLLKMCKPNTFTREDVIELQCHGGIVVINRVLDLIFK-NGVRPAEPGEFTKRA 120 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NG+IDL +AE++ DLI+S+T + ++ + G LS+ L + + IE +D Sbjct: 121 FLNGRIDLSQAEAIIDLINSKTVESSKAAVSHLEGRLSARLKIIRKTLVGLLAHIEVTVD 180 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 + E D++ + ++VL ++ +K ++ + + G+I+R G IVI G N GKSSL N Sbjct: 181 YPEH-DIEEITGEKVLENLKNIKGELHTLAGTFERGKILREGLNIVIAGKPNVGKSSLLN 239 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 L+ AIVTDIPGTTRD++ +++ G KI+DTAGIR T D+VEK G+ + + V Sbjct: 240 QLSGNTKAIVTDIPGTTRDIIEEYVNINGIPAKITDTAGIRNTQDVVEKIGVNKAYEAVG 299 Query: 298 NADL--ILLLKEINSKKE----ISFPKNIDFIFIGTKSDL--------YSTYTEEYDHLI 343 ADL ++L E E ++ KN + + K+DL E +D ++ Sbjct: 300 QADLTIVVLSAETGIDDEDIEILNLVKNKKALILINKTDLADKEQVNEIKAQLENHDIIL 359 Query: 344 --SSFTGEGLEELINKIKSILSNKFKKLPFS-----IPSHKRHLYHLSQTVRYLEMASLN 396 S G+EEL ++ +S F K S + ++ RH Y + + + ++ A LN Sbjct: 360 KASVINARGIEEL----EATISELFVKGKISGNDEVLLTNSRHKYLVDRAIEDIQQA-LN 414 Query: 397 EKDCG--LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G LD++ +++ + ++G+ITG E ++ IFS+FCIGK Sbjct: 415 SFSTGMPLDMVTIDIKSCADNIGQITGESIDEAVMHDIFSRFCIGK 460 >gi|229159044|ref|ZP_04287100.1| tRNA modification GTPase mnmE [Bacillus cereus ATCC 4342] gi|228624463|gb|EEK81234.1| tRNA modification GTPase mnmE [Bacillus cereus ATCC 4342] Length = 458 Score = 216 bits (549), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 148/459 (32%), Positives = 251/459 (54%), Gaps = 24/459 (5%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLD---G 58 E +TI A+ST AI+I+R+SG + I K K P ++ Y +D Sbjct: 2 EFDTIAAISTALGEGAIAIVRVSGDDAVEKVNRIFKGKDLTEVPSH-TIHYGHIVDLDTN 60 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 +++++ ++ + +P +FT E+ E + HGG+ VN +L+ L +RLA PGEF++RAF Sbjct: 61 QVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAF 119 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG+IDL +AE++ DLI ++T+ +++ M G LS L G+ + + +E ++D+ Sbjct: 120 LNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGRLRQDILETLAHVEVNIDY 179 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E +DV+ + ++ ++ +I+ + K G+I+R G I+G N GKSSL N+ Sbjct: 180 PEYDDVEEMTHNILIEKATHVRAEIAKILETSKQGKILREGIATAIIGRPNVGKSSLLNS 239 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L ++ AIVTDI GTTRDV+ +++ G +K+ DTAGIRET+D+VE+ G++R+ + Sbjct: 240 LVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSKEMMSQ 299 Query: 299 ADLILLL----KEINSKKEISFP--KNIDFIFIGTKSDLYST--------YTEEYDHLIS 344 ADL+L++ + + ++ E F + DFI I K+DL EE + + Sbjct: 300 ADLVLVVVNYSEALTNEDEDLFRAVQGKDFIVIVNKTDLPQAIDMERVIELAEENRVITT 359 Query: 345 SFTGE-GLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCG 401 S E G++EL I + + S+ RH+ L+Q + + + E Sbjct: 360 SLIEEQGIDELETAIADLFFEGTIDSADVTYVSNARHIGLLTQAGKTIGDAIEAIESGVP 419 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+ITG E L+D +FS+FC+GK Sbjct: 420 IDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458 >gi|288554601|ref|YP_003426536.1| tRNA modification GTPase TrmE [Bacillus pseudofirmus OF4] gi|288545761|gb|ADC49644.1| tRNA modification GTPase TrmE [Bacillus pseudofirmus OF4] Length = 456 Score = 216 bits (549), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 153/462 (33%), Positives = 253/462 (54%), Gaps = 32/462 (6%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LDGRI- 60 E +TI A+ST AI I+RLSG + + I K KP AS +G +DG Sbjct: 2 EFDTIAAISTALGEGAIGIVRLSGDEAVAIADKIYKGAKPLSEAASHTIVYGYIMDGETR 61 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +++ ++ + +P +FT ED E + HGG+ VN +L+ LA RLA PGEF++RAF N Sbjct: 62 VEEAMVSIMRAPRTFTREDVVEINCHGGLVSVNKVLK-LALKHGARLAEPGEFTKRAFLN 120 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G+IDL +AE + DLI ++T+ +++ + G LS L + +E ++D+ E Sbjct: 121 GRIDLSQAEGVMDLIRAKTDKAMNVALGQVEGRLSKKIAILRQALLETVASVEVNIDYPE 180 Query: 181 EEDVQNFSSKEVLNDIL-----FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 + ++ V +D+L F++ +I + G+I+R G VI+G N GKSSL Sbjct: 181 ------YDAEVVTHDLLIEKANFVEREIDKLLGTANQGKILREGLSTVIVGRPNVGKSSL 234 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N+L ++ AIVTDI GTTRDV+ +++ G +++ DTAGIRET+D+VE+ G++R+ Sbjct: 235 LNSLVHEEKAIVTDIAGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDMVERIGVERSRQV 294 Query: 296 VENADLILLL----KEINSKKEISFP--KNIDFIFIGTKSDL--------YSTYTEEYDH 341 ++ A+LILL+ +E++S+ E F K+++ I I K+D+ E Sbjct: 295 LKEAELILLVLNYGEELSSEDEALFEAVKHLNVIVIVNKTDVEQKIDLNRVRELAEGRPV 354 Query: 342 LISSFT-GEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEK 398 + +S EG++EL + I S+ + + S+ RH+ L Q ++ A S + Sbjct: 355 VTTSLIKDEGVDELESAIASLFFEGDLESGDATYVSNSRHIALLEQAKSTIQDAKSAIDM 414 Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ ++ LG+I G E L+D +FS+FC+GK Sbjct: 415 GVPIDLVQIDITRTRELLGEIIGDSVHESLIDQLFSQFCLGK 456 >gi|67540704|ref|XP_664126.1| hypothetical protein AN6522.2 [Aspergillus nidulans FGSC A4] gi|40738672|gb|EAA57862.1| hypothetical protein AN6522.2 [Aspergillus nidulans FGSC A4] gi|259480093|tpe|CBF70910.1| TPA: mitochondrial GTPase (Mss1), putative (AFU_orthologue; AFUA_6G04950) [Aspergillus nidulans FGSC A4] Length = 614 Score = 216 bits (549), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 120/311 (38%), Positives = 183/311 (58%), Gaps = 28/311 (9%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGL-------DG 58 TI+A+ST +AI+++R+SGP+C + + +C K P PR A++R + Sbjct: 62 TIYALSTAPGRAAIAVVRVSGPACVSIYQALCPKAPLPRPRVAAVRTIYDPASDEPCGQA 121 Query: 59 RILDKGLLIVF-PSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP----NLRLANPGEF 113 ILD G L+++ P P++ TGED EFH+HGG A+V +L ++K ++R A PGEF Sbjct: 122 DILDAGALVLYMPGPKTATGEDVLEFHLHGGPAIVKSVLSAISKTSGKEHSVRYAEPGEF 181 Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173 +RRAF N +++L + E+L D ++++TE QRRL++ G S LS Y +W +L + R +E Sbjct: 182 TRRAFMNDRLELPQIEALGDTLAADTEQQRRLAVRGASDALSKRYEKWRQQLLYARGELE 241 Query: 174 ADLDFSEEEDVQNFSSKEVLN---DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNA 230 A +DFSE++ S VL+ + L I+ HI GE++R+G K+ +LG NA Sbjct: 242 ALIDFSEDQYFDESSDDLVLSVSTQVRALSRQIALHIQNASKGELMRSGIKVALLGAPNA 301 Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD-------- 282 GKSSL N + ++ AIV+ GTTRD++ + +DL G+ K+ D AGIR Sbjct: 302 GKSSLLNRIVGREAAIVSTEEGTTRDIVDVGIDLGGWYCKLGDMAGIRSEPSSNSPGGAS 361 Query: 283 ----IVEKEGI 289 VEKEGI Sbjct: 362 LVIGSVEKEGI 372 Score = 40.4 bits (93), Expect = 0.52, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 3/47 (6%) Query: 397 EKDCGLDIIAENLRLASVSLGKITG---CVDVEQLLDIIFSKFCIGK 440 E + + + AE+LR A+ +L ITG DVE +L ++F KFC+GK Sbjct: 568 ESEVDIVVAAEHLRYAADALASITGKGESGDVEDVLGVVFEKFCVGK 614 >gi|307298711|ref|ZP_07578514.1| tRNA modification GTPase TrmE [Thermotogales bacterium mesG1.Ag.4.2] gi|306915876|gb|EFN46260.1| tRNA modification GTPase TrmE [Thermotogales bacterium mesG1.Ag.4.2] Length = 439 Score = 216 bits (549), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 142/440 (32%), Positives = 246/440 (55%), Gaps = 13/440 (2%) Query: 8 IFAVSTGALPSAISIIRLSGPSCF-QVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66 I A+ST SA ++IR SG ++ + K PR A L F D R +D+ ++ Sbjct: 6 ICALSTPRGLSATAVIRCSGKGIVSKISHLLPDLKTLKPRHAHLTSFMEGD-RYIDEVVV 64 Query: 67 IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126 + F P S+TGED E HG ++ LE L ++ R+A PGEF++RA NGK DL+ Sbjct: 65 VFFQGPASYTGEDLVELSFHGNPLIIENALESLFRV-GFRMALPGEFTKRAVLNGKFDLV 123 Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186 +AE++ LI+S+TE +++ G LS + +K+ + + +E +L++ +E + + Sbjct: 124 KAEAINALIASKTEKSLEAAIKSFRGSLSEEVASFREKMVRLLASVEVELNYPDEIET-D 182 Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246 +SS + ++++ LK ++ I + + G +I G K I+G +N GKS+L NAL K+D AI Sbjct: 183 YSS--LYDELVSLKKEMCEFIEKSRNGVVISQGIKTAIVGETNVGKSTLLNALLKRDRAI 240 Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306 V++IPGTTRD + DL++ G L ++ DTAGIR+ ++ +E GI+R+ +E A+L++LL+ Sbjct: 241 VSEIPGTTRDTIEEDLNIGGVLFRVIDTAGIRQAENEIEVLGIERSLKAIEEAELVILLR 300 Query: 307 EINSKKEISFPKNI-----DFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSI 361 + ++ + + + I KSD+ +D +IS+ TGEGL++L K+ Sbjct: 301 DPHNPESKDLEEELRNKGKRLIVAANKSDIRKVEQHHFDVVISARTGEGLKDL-EKLMLK 359 Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDIIAENLRLASVSLGKIT 420 + + + + R L V Y+ + E + +D+++ + A+ SL ++ Sbjct: 360 RTEEITSIGDEVIISARQKQKLLDAVDYIARSIEAIEGNITVDVLSTMIEQAARSLDELL 419 Query: 421 GCVDVEQLLDIIFSKFCIGK 440 G E +L+ IFS FC+GK Sbjct: 420 GTHITEDVLERIFSDFCVGK 439 >gi|224023939|ref|ZP_03642305.1| hypothetical protein BACCOPRO_00656 [Bacteroides coprophilus DSM 18228] gi|224017161|gb|EEF75173.1| hypothetical protein BACCOPRO_00656 [Bacteroides coprophilus DSM 18228] Length = 476 Score = 216 bits (549), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 153/479 (31%), Positives = 250/479 (52%), Gaps = 52/479 (10%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK--KKKPFPRKASLRYFFG----LDG 58 ++TI A++T A AI IR+SGP + + I K KP +A + FG +G Sbjct: 7 EDTICAIAT-AQGGAIGTIRVSGPEAITLTDRIFKPVSGKPLAERAPYTFTFGHILTPEG 65 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 I+D+ L+ +F +P S+TG+DS E HG ++ +++ L + R A PGE+++RAF Sbjct: 66 EIIDEVLVSLFRAPHSYTGQDSTEISCHGSSYILQQVMQLLIRQ-GCRAAGPGEYTQRAF 124 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NGK+DL +AE++ADLI+S + R++M M G S DKL H+ S +E +LDF Sbjct: 125 LNGKMDLSQAEAVADLIASTSAATHRMAMNQMRGGFSRELAVLRDKLLHLTSLMELELDF 184 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSH-ISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 S+ E+++ F+ + L I + H + +G ++NG + I+G +NAGKS+L N Sbjct: 185 SDHEELE-FADRSELEAIARQIEQVIHHLVDTFSVGNALKNGVPVAIVGETNAGKSTLLN 243 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 AL ++ AIV+DI GTTRDV+ ++L G + DTAGIRET D +E GI+R+F +++ Sbjct: 244 ALLNEERAIVSDIHGTTRDVIEDTMNLGGITFRFIDTAGIRETTDTIESLGIERSFQKLD 303 Query: 298 NADLILLLKEINSKKE---------ISFPKNIDFIFIGTKSDLYSTYTEEYDHL------ 342 AD++L + + +E + + + + K DL S D Sbjct: 304 QADIVLWIIDATCAEEQYHQLADKILPRCEGKHLVIVLNKVDLLSPADSSADEQLARLKT 363 Query: 343 -------------ISSFTGEGLEELINKIKSILSNKFKKLP-----FSIPSHKRHLYHLS 384 +S+ EGL +L ++ F LP + S+ RH LS Sbjct: 364 TLPDLPEDACVLSLSAKQKEGLSQLQKQLVD-----FTALPDLSQNDVVVSNIRHYEALS 418 Query: 385 QTVRYLEMAS--LNEKDCGLDIIAENLRLASVSLGKIT-GCVDVEQLLDIIFSKFCIGK 440 + + + L + G D+++++LR LG+I G ++ +++L IF FC+GK Sbjct: 419 RALEAIHRVQDGLAMQLSG-DLVSQDLRECLYHLGEIVGGTIETDEVLGNIFKHFCVGK 476 >gi|332361128|gb|EGJ38932.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis SK1056] Length = 479 Score = 216 bits (549), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 147/459 (32%), Positives = 258/459 (56%), Gaps = 22/459 (4%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLDGR 59 + E +TI A+ST AI I+RLSG F + + I K K ++ +L Y +D + Sbjct: 24 ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKNLSEVESHTLNYGHIVDPQ 83 Query: 60 ---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 ILD+ +L SP++FT ED E + HGGIAV N IL+ LA R+A PGEF++R Sbjct: 84 NQEILDEVMLGAMRSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARMAEPGEFTKR 142 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NG++DL +AE++ D+I ++T+ +++ + G LS+L ++ + + +E ++ Sbjct: 143 AFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQEILNTLAQVEVNI 202 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D+ E +DV+ +++ + + +S+ ++ + G+I+R G I+G N GKSSL Sbjct: 203 DYPEYDDVEEMTTQLMREKTAEFEALLSNLLNTARRGKILREGISTAIIGRPNVGKSSLL 262 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N L ++D AIVTDI GTTRDV+ ++++G +K+ DTAGIRETDD+VE+ G++R+ + Sbjct: 263 NNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEQIGVERSKKAL 322 Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------IS 344 + ADL+LL+ + ++ + ++ + I + K+DL E D L IS Sbjct: 323 QEADLVLLVLNASEPLTDQDRQLLEISQDSNRIVLLNKTDLEEKI--ELDQLPTDVIKIS 380 Query: 345 SFTGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCG 401 + ++++ +I K + + S+ RH+ + + + L+ + E Sbjct: 381 VLHNQNIDKIEERINQFFFEKAGIIEQDATYLSNARHISLIEKALESLQAVNQGLEMGMP 440 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ ++ LG+ITG ++L+ +FS+FC+GK Sbjct: 441 VDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 479 >gi|94994338|ref|YP_602436.1| tRNA modification GTPase TrmE [Streptococcus pyogenes MGAS10750] gi|166234825|sp|Q1J6U1|MNME_STRPF RecName: Full=tRNA modification GTPase mnmE gi|94547846|gb|ABF37892.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase [Streptococcus pyogenes MGAS10750] Length = 458 Score = 216 bits (549), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 146/464 (31%), Positives = 261/464 (56%), Gaps = 32/464 (6%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD- 57 + E +TI A+ST AI I+RLSG + + + K K + AS +G +D Sbjct: 3 ITKEFDTITAISTPLGEGAIGIVRLSGTDALAIAQSVFKGKN-LEQVASHTINYGHIIDP 61 Query: 58 --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 G I+D+ ++ V +P++FT E+ E + HGGIAV N IL+ L + R+A PGEF++ Sbjct: 62 NTGTIVDEVMVSVMLAPKTFTRENVVEINTHGGIAVTNEILQLLIRQ-GARMAEPGEFTK 120 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG++DL +AE++ D+I ++T+ ++++ + G LS L ++ + + +E + Sbjct: 121 RAFLNGRVDLTQAEAVMDIIRAKTDKAMTIAVKQLDGSLSQLINDTRQEILNTLAQVEVN 180 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +D+ E +DV+ ++ + ++ + + + K G+I+R G I+G N GKSSL Sbjct: 181 IDYPEYDDVEEMTTALLREKTQEFQSLLENLLRTAKRGKILREGLSTAIIGRPNVGKSSL 240 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N L ++D AIVTDI GTTRDV+ ++++G +K+ DTAGIRETDD+VE+ G++R+ Sbjct: 241 LNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAGIRETDDLVEQIGVERSKKA 300 Query: 296 VENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGE 349 ++ ADL+LL+ + K ++ ++ + I + K+DL E + L + Sbjct: 301 LQEADLVLLVLNASEKLTDQDRALLNLSQDSNRIILLNKTDLEQKI--ELEQLPADLI-- 356 Query: 350 GLEELINKIKSILSNKFKKLPF----------SIPSHKRHLYHLSQTVRYLEMASLNEK- 398 + L N+ +++ ++ +L F + S+ RH+ + + V+ LE ++N+ Sbjct: 357 SISVLTNQNINLIEDRINQLFFDNAGLVEQDATYLSNARHISLIEKAVQSLE--AVNDGL 414 Query: 399 --DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+ITG ++L+ +FS+FC+GK Sbjct: 415 ALGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 458 >gi|87300820|ref|ZP_01083662.1| tRNA modification GTPase [Synechococcus sp. WH 5701] gi|87284691|gb|EAQ76643.1| tRNA modification GTPase [Synechococcus sp. WH 5701] Length = 394 Score = 216 bits (549), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 143/398 (35%), Positives = 230/398 (57%), Gaps = 25/398 (6%) Query: 58 GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 G LD+ LL++ +P SFT ED E H HGG+ V +LE L + R A PGEFS+RA Sbjct: 7 GERLDEALLLLMKAPRSFTREDVVELHCHGGLIAVARVLE-LVLLSGARRARPGEFSQRA 65 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGEL----SSLYGQWIDKLTHIRSFIE 173 F NG++DL AE+++DLI++ + +L++ G+ G L S+L + +D+L + E Sbjct: 66 FLNGRLDLTRAEAISDLITARSRRAAQLALAGLDGGLQRRISALRERLLDQLAEL----E 121 Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233 A +DF EED+ + ++ ++ ++ ++ +++ +G+++R G K+ I+G N GKS Sbjct: 122 ARVDF--EEDLPPLDPEALVAELEAVRLELQVLVAEASVGQLLREGLKVAIIGRPNVGKS 179 Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293 SL NAL++++ AIVT++PGTTRD+L +L L+G + + DTAGIR TDD VE+ GI+R+ Sbjct: 180 SLLNALSRRERAIVTELPGTTRDLLESELVLQGVPLTLLDTAGIRPTDDPVERLGIERSR 239 Query: 294 LEVENADLILL-------LKEINSKKEISFPKNIDFIFIGTKSDLYS-TYTEEYDHLISS 345 + AD +LL + +++ + + +G K+D + + D +IS+ Sbjct: 240 QALAAADAVLLLVDLAEGWTQADAELHAQVLAGVPSLVVGNKADRAAGAPPAQVDVVISA 299 Query: 346 FTGEGLEELINKIKSILSNKF-KKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL-- 402 TG GLE L + S + + L ++ +R L + T L+ SL GL Sbjct: 300 LTGSGLEALAEALLSRCGHSLGQGLEVALNVRQRDLAAAAAT--SLD-GSLEAAAAGLPW 356 Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D +LR A+ SLG+ITG E +LD +FS+FCIGK Sbjct: 357 DFWTIDLRQAARSLGEITGEEVNEAVLDRVFSRFCIGK 394 >gi|139473816|ref|YP_001128532.1| tRNA modification GTPase TrmE [Streptococcus pyogenes str. Manfredo] gi|166234826|sp|A2REM7|MNME_STRPG RecName: Full=tRNA modification GTPase mnmE gi|134272063|emb|CAM30302.1| tRNA modification GTPase TrmE [Streptococcus pyogenes str. Manfredo] Length = 458 Score = 216 bits (549), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 146/460 (31%), Positives = 261/460 (56%), Gaps = 24/460 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD- 57 + E +TI A+ST AI I+RLSG + + + K K + AS +G +D Sbjct: 3 ITKEFDTITAISTPLGEGAIGIVRLSGTDALAIAQSVFKGKS-LEQVASHTINYGHIIDP 61 Query: 58 --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 G I+D+ ++ V +P++FT E+ E + HGGIAV N IL+ L + R+A PGEF++ Sbjct: 62 KTGTIIDEVMVSVMLAPKTFTRENVVEINTHGGIAVTNEILQLLIRQ-GARMAEPGEFTK 120 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG++DL +AE++ D+I ++T+ ++++ + G LS L ++ + + +E + Sbjct: 121 RAFLNGRVDLTQAEAVMDIIRAKTDKAMTIAVKQLDGSLSQLINDTRQEILNTLAQVEVN 180 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +D+ E +DV+ ++ + ++ + + + K G+I+R G I+G N GKSSL Sbjct: 181 IDYPEYDDVEEMTTALLREKTQEFQSLLENLLRTAKRGKILREGLSTAIIGRPNVGKSSL 240 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N L ++D AIVTDI GTTRDV+ ++++G +K+ DTAGIRETDD+VE+ G++R+ Sbjct: 241 LNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAGIRETDDLVEQIGVERSKKA 300 Query: 296 VENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEEY---DHL-ISS 345 ++ ADL+LL+ + K ++ ++ + I + K+DL E D++ IS Sbjct: 301 LQEADLVLLVLNASEKLTDQDRALLNLSQDSNRIILLNKTDLEQKIELEQLPDDYIPISV 360 Query: 346 FTGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK---DC 400 T + + + ++I + + + + S+ RH+ + + V+ LE ++N+ Sbjct: 361 LTNQNINLIEDRINQLFFDNAGLVEQDATYLSNARHISLIEKAVQSLE--AVNDGLALGM 418 Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+ITG ++L+ +FS+FC+GK Sbjct: 419 PVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 458 >gi|323449068|gb|EGB04959.1| hypothetical protein AURANDRAFT_59431 [Aureococcus anophagefferens] Length = 486 Score = 216 bits (549), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 158/472 (33%), Positives = 252/472 (53%), Gaps = 51/472 (10%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP--RKASLRYFFGLDGRILDK 63 +TI+A+S+G + ++++R+SGPS + K P P R ASLR +LD+ Sbjct: 29 DTIYALSSGRGVAGVAVVRVSGPSASDALAALTPGK-PLPAHRVASLRTLRDASD-VLDE 86 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 L++ F +P SFTGED E H HGG A V+G+LE L +P LR A+ GEF+RRAF GK+ Sbjct: 87 ALVLRFEAPRSFTGEDVVELHCHGGEATVDGVLEALDALPKLRAADRGEFTRRAFAAGKL 146 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE--E 181 L E E LADL++++T QRR ++ M G + Y +W +L +R+ E +DF + E Sbjct: 147 GLTEVEGLADLLAAKTAPQRRQALAQMGGSMERTYARWRGELASLRASAEVLVDFGDDVE 206 Query: 182 EDVQNFSS--KEVLN-DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 DV + S + L+ + LK ++ + ++ GE R+G ++ SSL NA Sbjct: 207 GDVADQSDDIRAALDASVRSLKTELDAALTDAPRGEATRDGVRV----------SSLLNA 256 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---ETD--DIVEKEGIKRTF 293 +A +D AIV+ GTTRDVL I L L G ++ DTAG+R E D D VE EG++R Sbjct: 257 VAARDAAIVSQAAGTTRDVLEIGLSLGGLPARLFDTAGLRVDGEEDSLDAVEVEGMRRAA 316 Query: 294 LEVENADLILLL---------------KEINS--KKEISFPKNIDFIFIGTKSDLY---- 332 E A +++ + + I +++ P + + + K+DL Sbjct: 317 RAAEAAHVVVFVLDAADDDASAVADAFRAIAPVWRRDDGAPAP-ELVVVTNKADLAEGLG 375 Query: 333 STYTEEYDHLISSFTGEGLEELINKIKSILSNKFK--KLPFSIPS--HKRHLYHLSQTVR 388 + S+ +G L++ ++ + + F+ + + P+ RH H++ V Sbjct: 376 AVVAAAATVRASATAADGAAALVDDLERRVVDAFRSSRDDYEAPAITRARHRKHVASCVA 435 Query: 389 YLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L+ A L++ D +++AE LR A+ LG + G VD EQ+LD++F+ FCIGK Sbjct: 436 CLD-AVLSDPDLMPELVAEELRAATSDLGAVVGAVDTEQVLDVLFNDFCIGK 486 >gi|119196533|ref|XP_001248870.1| hypothetical protein CIMG_02641 [Coccidioides immitis RS] Length = 628 Score = 216 bits (549), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 128/332 (38%), Positives = 188/332 (56%), Gaps = 36/332 (10%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGL-----DGRI 60 TI+A+ST +AI+I+R+SGP+C QV + +C P PR A+LR + Sbjct: 60 TIYALSTAPGRAAIAIVRVSGPACVQVYKGLCPGSPLPKPRYATLRTLCDPTQSPSSNAV 119 Query: 61 LDKGLLIV-FPSPESFTGEDSAEFHVHGGIAVVNGILEELAKM----------PNLRLAN 109 LD G L++ FP+P++ TGED E H+HG AV+ +L + K +R A Sbjct: 120 LDSGALVLYFPAPKTVTGEDVLELHIHGSPAVIKAVLNAIPKCLENKIETGLESCIRYAE 179 Query: 110 PGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR 169 PGEF+RRAF N ++DL + E+L + ++++TE QRRL++ G S LS+ Y W +L + R Sbjct: 180 PGEFTRRAFLNDRLDLPQIEALGNTLAADTEQQRRLAIRGTSDTLSARYENWRQQLLYAR 239 Query: 170 SFIEADLDFSEE----EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVIL 225 +EA +DFSE+ E V +F V + L N I HI GE++R+G KI +L Sbjct: 240 GELEALIDFSEDQHFDESVDDFMIS-VTGQVRKLLNQIDVHIENASKGELLRSGIKIALL 298 Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR------- 278 G NAGKSSL N + ++ AIV+ GTTRD++ + +DL G+L K D AG+R Sbjct: 299 GAPNAGKSSLLNRIVGREAAIVSSEEGTTRDIVDVGVDLGGWLCKFGDMAGLRSAPPKLI 358 Query: 279 --ETDDI-----VEKEGIKRTFLEVENADLIL 303 E D VE+EGI+R +DL++ Sbjct: 359 GEERKDSTVIGEVEREGIRRAKARALESDLVI 390 >gi|19746040|ref|NP_607176.1| tRNA modification GTPase TrmE [Streptococcus pyogenes MGAS8232] gi|94990416|ref|YP_598516.1| tRNA modification GTPase TrmE [Streptococcus pyogenes MGAS10270] gi|209559376|ref|YP_002285848.1| tRNA modification GTPase TrmE [Streptococcus pyogenes NZ131] gi|25009494|sp|Q8P161|MNME_STRP8 RecName: Full=tRNA modification GTPase mnmE gi|166234824|sp|Q1JH22|MNME_STRPD RecName: Full=tRNA modification GTPase mnmE gi|19748208|gb|AAL97675.1| putative thiophene degradation protein F [Streptococcus pyogenes MGAS8232] gi|94543924|gb|ABF33972.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase [Streptococcus pyogenes MGAS10270] gi|209540577|gb|ACI61153.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Streptococcus pyogenes NZ131] gi|323127423|gb|ADX24720.1| tRNA modification GTPase TrmE [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 458 Score = 216 bits (549), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 146/460 (31%), Positives = 261/460 (56%), Gaps = 24/460 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD- 57 + E +TI A+ST AI I+RLSG + + + K K + AS +G +D Sbjct: 3 ITKEFDTITAISTPLGEGAIGIVRLSGTDALAIAQSVFKGKN-LEQVASHTINYGHIIDP 61 Query: 58 --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 G I+D+ ++ V +P++FT E+ E + HGGIAV N IL+ L + R+A PGEF++ Sbjct: 62 KTGTIIDEVMVSVMLAPKTFTRENVVEINTHGGIAVTNEILQLLIRQ-GARMAEPGEFTK 120 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG++DL +AE++ D+I ++T+ ++++ + G LS L ++ + + +E + Sbjct: 121 RAFLNGRVDLTQAEAVMDIIRAKTDKAMTIAVKQLDGSLSQLINDTRQEILNTLAQVEVN 180 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +D+ E +DV+ ++ + ++ + + + K G+I+R G I+G N GKSSL Sbjct: 181 IDYPEYDDVEEMTTALLREKTQEFQSLLENLLRTAKRGKILREGLSTAIIGRPNVGKSSL 240 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N L ++D AIVTDI GTTRDV+ ++++G +K+ DTAGIRETDD+VE+ G++R+ Sbjct: 241 LNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAGIRETDDLVEQIGVERSKKA 300 Query: 296 VENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEEY---DHL-ISS 345 ++ ADL+LL+ + K ++ ++ + I + K+DL E D++ IS Sbjct: 301 LQEADLVLLVLNASEKLTDQDRALLNLSQDSNRIILLNKTDLEQKIELEQLPDDYIPISV 360 Query: 346 FTGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK---DC 400 T + + + ++I + + + + S+ RH+ + + V+ LE ++N+ Sbjct: 361 LTNQNINLIEDRINQLFFDNAGLVEQDATYLSNARHISLIEKAVQSLE--AVNDGLALGM 418 Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+ITG ++L+ +FS+FC+GK Sbjct: 419 PVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 458 >gi|314940137|ref|ZP_07847317.1| tRNA modification GTPase TrmE [Enterococcus faecium TX0133a04] gi|314943032|ref|ZP_07849836.1| tRNA modification GTPase TrmE [Enterococcus faecium TX0133C] gi|314948150|ref|ZP_07851546.1| tRNA modification GTPase TrmE [Enterococcus faecium TX0082] gi|314953436|ref|ZP_07856354.1| tRNA modification GTPase TrmE [Enterococcus faecium TX0133A] gi|314993825|ref|ZP_07859161.1| tRNA modification GTPase TrmE [Enterococcus faecium TX0133B] gi|314998150|ref|ZP_07863032.1| tRNA modification GTPase TrmE [Enterococcus faecium TX0133a01] gi|313587862|gb|EFR66707.1| tRNA modification GTPase TrmE [Enterococcus faecium TX0133a01] gi|313591716|gb|EFR70561.1| tRNA modification GTPase TrmE [Enterococcus faecium TX0133B] gi|313594539|gb|EFR73384.1| tRNA modification GTPase TrmE [Enterococcus faecium TX0133A] gi|313598232|gb|EFR77077.1| tRNA modification GTPase TrmE [Enterococcus faecium TX0133C] gi|313640642|gb|EFS05222.1| tRNA modification GTPase TrmE [Enterococcus faecium TX0133a04] gi|313645404|gb|EFS09984.1| tRNA modification GTPase TrmE [Enterococcus faecium TX0082] Length = 485 Score = 215 bits (548), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 154/469 (32%), Positives = 265/469 (56%), Gaps = 42/469 (8%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC----KKKKPFPRKASLRYFFGLD-- 57 E +TI A+ST AISI+RLSG Q+ + + K+ P ++ Y +D Sbjct: 27 EFDTIAAISTPPGEGAISIVRLSGDQAVQLADKVYQSGNKRLSEVPSH-TIHYGHIVDPK 85 Query: 58 -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 +++D+ ++ V +P++FT ED E + HGGI VVN IL+ L + RLA PGEF++R Sbjct: 86 SNQLVDEVMVSVMRAPKTFTREDVVEINCHGGIVVVNQILQLLLR-EGARLAEPGEFTKR 144 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NG++DL +AE++ DLI ++T+ L++ + G LS+L ++ + +E ++ Sbjct: 145 AFLNGRVDLSQAEAVMDLIRAKTDKAMGLALNQLDGNLSALIRSLRQEILETLAQVEVNI 204 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D+ E +DV+ ++K +L ++ I + ++ K G+++R G I+G N GKSSL Sbjct: 205 DYPEYDDVEELTTKLLLEKAQMIQQRIQALLATSKQGKVLREGLSTAIIGRPNVGKSSLL 264 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N L +++ AIVTDI GTTRDV+ +++ G +K+ DTAGIRET+D+VE+ G++R+ + Sbjct: 265 NHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSRKAL 324 Query: 297 ENADLILLL----KEINSKKE--ISFPKNIDFIFIGTKSDLYSTYTEE-YDHL------- 342 ADLILL+ + + ++ E + + I + K+DL + +E L Sbjct: 325 AEADLILLVLNQSEPLTAEDEQLLEATSGLKRIILLNKTDLPAQLEQEKLKKLIENEPVF 384 Query: 343 -ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT--VRYLEMASLNEK- 398 IS +GL ++++S +S+ F FS + +R ++S T + LE ASL+ + Sbjct: 385 SISVAKNDGL----DRLESAISDLF----FSGETGERDATYVSNTRHIALLEKASLSLEE 436 Query: 399 -----DCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D G+ D++ ++ LG++ G ++L+ +FS+FC+GK Sbjct: 437 VIAGIDSGMPVDLVQIDMTRCWDYLGEVVGDSVQDELITQLFSQFCLGK 485 >gi|228470917|ref|ZP_04055762.1| tRNA modification GTPase TrmE [Porphyromonas uenonis 60-3] gi|228307314|gb|EEK16328.1| tRNA modification GTPase TrmE [Porphyromonas uenonis 60-3] Length = 470 Score = 215 bits (548), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 158/474 (33%), Positives = 250/474 (52%), Gaps = 49/474 (10%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 ETI A +T AL +++IR+SG Q+ E + K+ PR+A+ +DG+++D + Sbjct: 7 ETICAPAT-ALGGGLAVIRISGSLVPQIAETLLGKRLA-PREAT-TAGLRIDGQLIDLVV 63 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 F +P S+TGE+ E H +V ILE +A R+A+PGEF+RRA +GK+DL Sbjct: 64 ATYFAAPHSYTGEEVVELSCHASPFIVRSILEWIAHQKGCRMADPGEFTRRALAHGKLDL 123 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 EAE++ADLI++ T Q +++ME +G LS L + L +E +LDFS EEDV Sbjct: 124 AEAEAVADLIAATTATQHKMAMEQHTGRLSHLLNELRATLLRFAGLLELELDFS-EEDVA 182 Query: 186 NFSSKEVLNDILFLKNDISSHISQG-KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 F+ + L + L ++Q G+ ++ G I+G N GKSSL NAL + + Sbjct: 183 -FADRTTLAETLATIQHQLRLLTQSFSTGQELQQGIPTAIIGAPNVGKSSLLNALLQHER 241 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIV+DIPGTTRD + L + G L ++ DTAG+R+T D+VE+ GI+R++ ++ +A LIL Sbjct: 242 AIVSDIPGTTRDTVEGRLTIRGTLFRLIDTAGLRQTTDLVEQLGIERSYQQISSARLILW 301 Query: 305 L--------KEINSKKEISFP---KNIDFIFIGTKSDLYS--TYTEEYDHL--------- 342 + E+ ++ P + I + K DL + T+ H Sbjct: 302 VIAPPLPTWDELETQLGELLPLTSPDSTLILLLNKRDLLTEREVTDWLSHCSDQLQRITD 361 Query: 343 ---------ISSFTGEGLEEL----INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY 389 IS+ +G+E L + ++ SN+ + +++ RH L++ Sbjct: 362 KRHTTPPLAISARAAQGIEALEELMVTNTHTLHSNEETVMLYNL----RHYEALTKASHA 417 Query: 390 LEMASLNEKDCGL--DIIAENLRLASVSLGKITGC-VDVEQLLDIIFSKFCIGK 440 LE+ S + GL D+I LR A +G +TG + +++L IFS FCIGK Sbjct: 418 LELVSEGLHN-GLTSDLITPYLREAIEEIGLVTGASITSDEVLGYIFSHFCIGK 470 >gi|229176160|ref|ZP_04303652.1| tRNA modification GTPase mnmE [Bacillus cereus MM3] gi|228607319|gb|EEK64649.1| tRNA modification GTPase mnmE [Bacillus cereus MM3] Length = 458 Score = 215 bits (548), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 145/461 (31%), Positives = 251/461 (54%), Gaps = 28/461 (6%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLD---G 58 E +TI A+ST AI+I+R+SG + I K K P ++ Y +D Sbjct: 2 EFDTIAAISTALGEGAIAIVRVSGDDAVEKVNRIFKGKDLTEVPSH-TIHYGHIVDLDTN 60 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 +++++ ++ + +P +FT E+ E + HGG+ VN +L+ L +RLA PGEF++RAF Sbjct: 61 QVIEEVMVSILRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAF 119 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG+IDL +AE++ DLI ++T+ +++ M G LS L G+ + + +E ++D+ Sbjct: 120 LNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGRLRQDILETLAHVEVNIDY 179 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E +DV+ + ++ ++ +I+ + K G+I+R G I+G N GKSSL N+ Sbjct: 180 PEYDDVEEMTHNILIEKATHVRTEIAKILETSKQGKILREGIATAIIGRPNVGKSSLLNS 239 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L ++ AIVTDI GTTRDV+ +++ G +K+ DTAGIRET+D+VE+ G++R+ + Sbjct: 240 LVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSKEMMSQ 299 Query: 299 ADLILLLKEINSKKEISFP--------KNIDFIFIGTKSDLYSTYTEEY-------DHLI 343 ADL+L++ +N + ++ + DFI I K+DL E + +I Sbjct: 300 ADLVLVV--VNYSEALTHEDEDLFRAVQGKDFIVIVNKTDLSQVIDMERVTELAAGNRII 357 Query: 344 SS--FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKD 399 ++ +G++EL I + + S+ RH+ L+Q + + + E Sbjct: 358 TTSLIEEQGIDELEKAIADLFFEGTIDSADVTYVSNARHIGLLTQAGKTIGDAIEAIENG 417 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+ITG E L+D +FS+FC+GK Sbjct: 418 VPIDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458 >gi|324991080|gb|EGC23014.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis SK353] Length = 457 Score = 215 bits (548), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 147/461 (31%), Positives = 260/461 (56%), Gaps = 26/461 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLDGR 59 + E +TI A+ST AI I+RLSG F + + I K K ++ +L Y +D + Sbjct: 2 ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKNLSKVESHTLNYGHIVDPQ 61 Query: 60 ---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 ILD+ +L SP++FT ED E + HGGIAV N IL+ LA R+A PGEF++R Sbjct: 62 NQEILDEVMLGAMRSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARMAEPGEFTKR 120 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NG++DL +AE++ D+I ++T+ +++ + G LS+L ++ + + +E ++ Sbjct: 121 AFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQEILNTLAQVEVNI 180 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D+ E +DV+ +++ + + +S+ + + G+I+R G I+G N GKSSL Sbjct: 181 DYPEYDDVEEMTTQLMREKTAEFEALLSNLLDTARRGKILREGISTAIIGRPNVGKSSLL 240 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N L ++D AIVTDI GTTRDV+ ++++G +K+ DTAGIRETDD+VE+ G++R+ + Sbjct: 241 NNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEQIGVERSKKAL 300 Query: 297 ENADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTYTEEYDHL------ 342 + ADL+LL+ +N+ + ++ ++ + I + K+DL E D L Sbjct: 301 QEADLVLLV--LNASESLTEQDRQLLEISQDSNRIVLLNKTDLEEKI--ELDQLPADAIK 356 Query: 343 ISSFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKD 399 IS + ++++ +I + + + + S+ RH+ + + + L+ + E Sbjct: 357 ISVLHNQNIDKIEERINQLFFENAGIVEQDATYLSNTRHISLIEKALESLQAVNQGLEMG 416 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ ++ LG+ITG ++L+ +FS+FC+GK Sbjct: 417 MPVDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 457 >gi|229153643|ref|ZP_04281819.1| tRNA modification GTPase mnmE [Bacillus cereus m1550] gi|228629829|gb|EEK86482.1| tRNA modification GTPase mnmE [Bacillus cereus m1550] Length = 458 Score = 215 bits (548), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 147/459 (32%), Positives = 253/459 (55%), Gaps = 24/459 (5%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLD---G 58 E +TI A+ST AI+I+R+SG + + I K K P ++ Y +D Sbjct: 2 EFDTIAAISTALGEGAIAIVRVSGDDAVEKVDRIFKGKDLTEVPSH-TIHYGHIVDLDTN 60 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 +++++ ++ + +P +FT E+ E + HGG+ VN +L+ L +RLA PGEF++RAF Sbjct: 61 QVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAF 119 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG+IDL +AE++ DLI ++T+ +++ M G LS L G ++ + +E ++D+ Sbjct: 120 LNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGLLRQEILETLAHVEVNIDY 179 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E +DV+ + ++ ++++I + K G+I+R G I+G N GKSSL N+ Sbjct: 180 PEYDDVEEMTHNILIEKATHVRSEIEKILETSKQGKILREGIATAIIGRPNVGKSSLLNS 239 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L ++ AIVTDI GTTRDV+ +++ G +K+ DTAGIRET+DIVE+ G++R+ + Sbjct: 240 LVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDIVERIGVERSKEMMSQ 299 Query: 299 ADLILLL----KEINSKKEISFP--KNIDFIFIGTKSDLYSTYTEEY-------DHLISS 345 ADL+L++ + + ++ E F + DFI I K+DL E + +I++ Sbjct: 300 ADLVLVVVNYSEALTNEDEDLFRAVQGKDFIVIVNKTDLPQAIDMERVTELAAGNRVITT 359 Query: 346 --FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCG 401 +G++EL I + + S+ RH+ L+Q + + + E Sbjct: 360 SLIEEQGIDELEKAIADLFFEGTIDSADMTYVSNARHIGLLTQAGKTIGDAVEAIENGVP 419 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+ITG E L+D +FS+FC+GK Sbjct: 420 IDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458 >gi|78188083|ref|YP_378421.1| tRNA modification GTPase TrmE [Chlorobium chlorochromatii CaD3] gi|123579063|sp|Q3ANQ3|MNME_CHLCH RecName: Full=tRNA modification GTPase mnmE gi|78170282|gb|ABB27378.1| tRNA modification GTPase trmE [Chlorobium chlorochromatii CaD3] Length = 473 Score = 215 bits (548), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 161/473 (34%), Positives = 262/473 (55%), Gaps = 37/473 (7%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK-KPFPRKASLRYF---FGL 56 ++ + E I A++T A++++R+SG F + + K+ P AS + F FG Sbjct: 5 LSFQDEPIVALATPLGVGALAVVRMSGQGVFDIARKVFHKQGAPDFHLASSKGFQAHFGT 64 Query: 57 --DGR-ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEF 113 D + ++D+ + +VF SP SFT ED EF HGG VV +L+ L RLA PGEF Sbjct: 65 IHDAQGVVDEVIALVFRSPRSFTMEDMVEFSCHGGPVVVQHLLKALID-AGCRLAEPGEF 123 Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173 +RRAF NG+IDLL+AE++ ++I + +E R ++ M G LS + +KL H + +E Sbjct: 124 TRRAFLNGRIDLLQAEAIGEMIHARSESAFRTAVTQMQGRLSRQLEEMREKLLHSCALLE 183 Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233 +LDFSEE DV+ + +E+ D+ L+ +I+ + + G +++ G V++G NAGKS Sbjct: 184 LELDFSEE-DVEFQNREELREDVQRLQGEINRLLDSYQHGRLLKEGVATVLVGSPNAGKS 242 Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293 +L NAL ++ +IV+ PGTTRD + L L L ++ DTAG+RE ++ VE EGI+R++ Sbjct: 243 TLLNALLGEERSIVSHQPGTTRDYIEEPLLLGSTLFRLIDTAGLREGEEEVEHEGIRRSY 302 Query: 294 LEVENADLILL------------LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH 341 ++ AD++L L +I S E + P N+ + + K D + TE Sbjct: 303 RKIAEADVVLYLLDVSHPDYCNELSDITSLLEQASP-NVQLLLVANKCDAITNPTERLAQ 361 Query: 342 L-----------ISSFTGEGLEELINKIKSILS--NKFKKLPFSIPSHKRHLYHLSQTVR 388 L I++ G+GLE L ++ ++++ +K + I S RH L + Sbjct: 362 LQAAMPQATVCGIAAKEGDGLEALKQQMSNMVAGLDKLHEASVLITS-MRHYEALRRASD 420 Query: 389 YLEM-ASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LE A L + +++A LR A ++G+ITG V +++L +IF +FCIGK Sbjct: 421 ALENGACLVAEHAETELVAFELRSALEAVGEITGKVVNDEILSLIFERFCIGK 473 >gi|69247494|ref|ZP_00604364.1| tRNA modification GTPase TrmE:Small GTP-binding protein domain:GTP-binding [Enterococcus faecium DO] gi|68194819|gb|EAN09294.1| tRNA modification GTPase TrmE:Small GTP-binding protein domain:GTP-binding [Enterococcus faecium DO] Length = 494 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 154/469 (32%), Positives = 265/469 (56%), Gaps = 42/469 (8%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC----KKKKPFPRKASLRYFFGLD-- 57 E +TI A+ST AISI+RLSG Q+ + + K+ P ++ Y +D Sbjct: 36 EFDTIAAISTPPGEGAISIVRLSGDQAVQLADKVYQSGNKRLSEVPSH-TIHYGHIVDPK 94 Query: 58 -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 +++D+ ++ V +P++FT ED E + HGGI VVN IL+ L + RLA PGEF++R Sbjct: 95 SNQLVDEVMVSVMRAPKTFTREDVVEINCHGGIVVVNQILQLLLR-EGARLAEPGEFTKR 153 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NG++DL +AE++ DLI ++T+ L++ + G LS+L ++ + +E ++ Sbjct: 154 AFLNGRVDLSQAEAVMDLIRAKTDKAMGLALNQLDGNLSALIRSLRQEILETLAQVEVNI 213 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D+ E +DV+ ++K +L ++ I + ++ K G+++R G I+G N GKSSL Sbjct: 214 DYPEYDDVEELTTKLLLEKAQMIQQRIQALLATSKQGKVLREGLSTAIIGRPNVGKSSLL 273 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N L +++ AIVTDI GTTRDV+ +++ G +K+ DTAGIRET+D+VE+ G++R+ + Sbjct: 274 NHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSRKAL 333 Query: 297 ENADLILLL----KEINSKKE--ISFPKNIDFIFIGTKSDLYSTYTEE-YDHL------- 342 ADLILL+ + + ++ E + + I + K+DL + +E L Sbjct: 334 AEADLILLVLNQSEPLTAEDEQLLEATSGLKRIILLNKTDLPAQLEQEKLKKLIENEPVF 393 Query: 343 -ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT--VRYLEMASLNEK- 398 IS +GL ++++S +S+ F FS + +R ++S T + LE ASL+ + Sbjct: 394 SISVAKNDGL----DRLESAISDLF----FSGETGERDATYVSNTRHIALLEKASLSLEE 445 Query: 399 -----DCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D G+ D++ ++ LG++ G ++L+ +FS+FC+GK Sbjct: 446 VIAGIDSGMPVDLVQIDMTRCWDYLGEVVGDSVQDELITQLFSQFCLGK 494 >gi|124024442|ref|YP_001018749.1| tRNA modification GTPase TrmE [Prochlorococcus marinus str. MIT 9303] gi|166234806|sp|A2CDC4|MNME_PROM3 RecName: Full=tRNA modification GTPase mnmE gi|123964728|gb|ABM79484.1| putative thiophen / furan oxidation protein [Prochlorococcus marinus str. MIT 9303] Length = 465 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 150/454 (33%), Positives = 252/454 (55%), Gaps = 45/454 (9%) Query: 19 AISIIRLSGPSCFQVCEFICKKKKPFPRK---ASLRYFFG--LD--GR-ILDKGLLIVFP 70 I+++RLSGP+ E + + P + S R +G +D G+ +D+ L+++ Sbjct: 25 GIAVVRLSGPAA----EVVGRSVVSIPGQQLWVSHRVLYGHVMDESGKERIDEVLVLLMK 80 Query: 71 SPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAES 130 P SFTGED E H HGG+ V +LE + P++R A PGEFS+RA NG++DL +AE+ Sbjct: 81 GPRSFTGEDVVEIHCHGGLMAVQRVLERVLAQPHVRRALPGEFSQRAVLNGRLDLTQAEA 140 Query: 131 LADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186 +++L+++ + +L+M G+ G ++SL + +D+L S +EA +DF EED+ Sbjct: 141 ISELVAARSRRAAQLAMTGVDGGIQRRITSLRERLLDQL----SELEARVDF--EEDLPP 194 Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246 + E+L ++ ++ ++ + K G+++R G ++ ++G N GKSSL N L++++ AI Sbjct: 195 LDAAELLLELQCVRRELEQLVEDAKRGDVLRQGLQVALVGRPNVGKSSLLNRLSRRERAI 254 Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA------- 299 VTD+PGTTRDVL ++ LEG + + DTAGIR T D +E+ GI R+ + A Sbjct: 255 VTDLPGTTRDVLESEIVLEGVPITLVDTAGIRATKDALEQLGIDRSHQALAAADVAVLVF 314 Query: 300 DLILLLKEINSKKEISFPKNIDFIFIGTKSDLY-----STYTEEYDH-----LISSFTGE 349 DL L ++ P ++ + +G K+DL ++ + E D ++S+ TG+ Sbjct: 315 DLSLGWTADDAALLAQIPDDLPRLLVGNKADLQPASMTASLSNEVDGKTVDVMLSALTGQ 374 Query: 350 GLEELINKI-KSILSNKFKKLPFSIPSHKRH--LYHLSQTVRYLEMASLNEKDCGLDIIA 406 G E LI + K+ +++ + L ++ ++ R E A+ + D Sbjct: 375 GEEALIEAVLKTCGASEAQGLVVALNQRQQDLAATAAIALARTQEAAA---QKLPWDFWT 431 Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +LR A SLG+ITG E +LD IFS+FCIGK Sbjct: 432 IDLRQAISSLGEITGEEITEAVLDRIFSRFCIGK 465 >gi|320546578|ref|ZP_08040893.1| tRNA modification GTPase TrmE [Streptococcus equinus ATCC 9812] gi|320448963|gb|EFW89691.1| tRNA modification GTPase TrmE [Streptococcus equinus ATCC 9812] Length = 457 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 155/468 (33%), Positives = 262/468 (55%), Gaps = 40/468 (8%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLD-- 57 + E +TI A+ST AI I+RLSG + + + + K + ++ Y +D Sbjct: 2 ITKEFDTIAAISTPLGEGAIGIVRLSGTDALDIAKKVYRGKDLSKVDSHTINYGHIVDPD 61 Query: 58 -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 ILD+ ++ V SP++FT ED E + HGG+AV N IL+ L RLA PGEF++R Sbjct: 62 NDEILDEVMVSVMLSPKTFTREDVIEINTHGGVAVTNEILQ-LVLRHGARLAEPGEFTKR 120 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NG++DL +AE++ D+I ++T+ ++++ + G LS L ++ + + +E ++ Sbjct: 121 AFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSKLINDTRQEILNTLAQVEVNI 180 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D+ E +DV+ ++ + ++ + + + + G+I+R G I+G N GKSSL Sbjct: 181 DYPEYDDVEEMTTALIHEKTQEFQSLLENLLRTARRGKILREGLSTAIIGRPNVGKSSLL 240 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N L ++D AIVTDI GTTRDV+ ++++G +K+ DTAGIRETDD+VEK G++R+ + Sbjct: 241 NNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLVDTAGIRETDDVVEKIGVERSKKAL 300 Query: 297 ENADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTYTEEYDHL------ 342 E ADL+LL+ +NS + ++ K+ + I + K+DL E D L Sbjct: 301 EEADLVLLV--LNSSEPLTDQDRALLELSKDSNRIILLNKTDLPEKI--EADQLPDDVIR 356 Query: 343 ISSFTGEG---LEELINKI----KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL 395 IS E +EE IN++ I+ L S+ RH+ + + V+ L+ S+ Sbjct: 357 ISVLKNENINLIEERINQLFFDNAGIVEKDATYL-----SNARHISLIEKAVQSLQ--SV 409 Query: 396 NEK-DCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 NE + G+ D++ +L LG+ITG ++L++ +F++FC+GK Sbjct: 410 NEGLEMGMPVDLLQIDLTRCWEILGEITGDAAPDELINQLFTQFCLGK 457 >gi|258517429|ref|YP_003193651.1| tRNA modification GTPase TrmE [Desulfotomaculum acetoxidans DSM 771] gi|257781134|gb|ACV65028.1| tRNA modification GTPase TrmE [Desulfotomaculum acetoxidans DSM 771] Length = 461 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 157/470 (33%), Positives = 256/470 (54%), Gaps = 45/470 (9%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK--KKKPFPRKASLRYFFG-----LD 57 ++TI A++T I I+R+SG + E I + K+K + + + +G + Sbjct: 3 EDTIAAIATPLGEGGIGIVRISGTESIIIAEKIFRSLKEKDWVKNLNYGLIYGYIVDPFN 62 Query: 58 GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 I+D+ LL V +P S+T E+ E + HGG+ + E L R A PGEF++RA Sbjct: 63 NSIVDEVLLSVMRAPNSYTRENIVEINCHGGLVPLRKTFE-LVLNSGARTAEPGEFTKRA 121 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NG++DL +AES+ D+I ++T L+++ + G+LS DKL ++ + +EA +D Sbjct: 122 FLNGRLDLAQAESVIDVIRAKTSDSLSLAVKQLEGKLSEKISNMQDKLLYLLAHVEAVID 181 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 F EE D++ + +++ +I + +I+ I + G+I R G +VI G N GKSSL N Sbjct: 182 FPEE-DIEASTIEKIKAEIKDIIKEINKWIELARAGKIYREGLAVVIAGKPNVGKSSLLN 240 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 AL K+ AIVT+IPGTTRD + ++++G VKI+DTAG+RET D VEK G++ + ++ Sbjct: 241 ALLKEKRAIVTEIPGTTRDAIEEYINIKGIPVKITDTAGLRETGDTVEKIGVQISKEKIM 300 Query: 298 NADLIL---------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL 342 AD+IL +L E+ ++ I ID +G+ ++ + + +Y++L Sbjct: 301 GADIILYMLDVKNGFTDVDCYVLDEVINRNLIVIINKID---VGSGIEIINNISNKYENL 357 Query: 343 ----ISSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRH-------LYHLSQTVRYL 390 IS+ GL+ L + I S + S I S+ RH +Y+L + + Sbjct: 358 EIVQISALKDIGLDLLEDAIASFVFSGNAAASNEIIISNTRHKSVLKRVVYNLQDVIEGI 417 Query: 391 EMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E A LDI++ +LR A +LG+ITG E ++D IF +FCIGK Sbjct: 418 ENA------MPLDIVSIDLRNAWETLGEITGSSVTEDIIDKIFKEFCIGK 461 >gi|227518132|ref|ZP_03948181.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0104] gi|227074400|gb|EEI12363.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0104] Length = 465 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 149/463 (32%), Positives = 257/463 (55%), Gaps = 30/463 (6%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK-KKPFPRKASLRYFFG-----LD 57 E +TI A+ST AISI+RLSG + + + K + + +G + Sbjct: 7 EFDTIAAISTPPGEGAISIVRLSGEQAVAIANKVYRSGTKDLAKVPTHTIHYGHIVDPQN 66 Query: 58 GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 +++D+ +L V +P++FT ED E + HGGI VVN +L+ L + R+A PGEF++RA Sbjct: 67 DQLIDEVMLSVMRAPKTFTREDVVEINCHGGIVVVNQLLQLLLR-EGARMAEPGEFTKRA 125 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NG++DL +AE++ DLI ++T+ +++ + G LS+L ++ + + +E ++D Sbjct: 126 FLNGRMDLSQAEAVMDLIRAKTDKAMNVALNQLDGNLSALIRSLRQEILNTLAQVEVNID 185 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 + E +DV+ ++K +L F+K I ++ K G+I+R G I+G N GKSSL N Sbjct: 186 YPEYDDVEELTTKLLLEKAEFVKAQIQQLLTTAKQGKILREGLSTAIIGRPNVGKSSLLN 245 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 L +++ AIVTDI GTTRDV+ +++ G +K+ DTAGIRET+DIVE+ G++R+ + Sbjct: 246 HLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDIVERIGVERSRKALA 305 Query: 298 NADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTY-TEEYDHL------ 342 ++DLILL+ +N +E++ K + + + K DL + E L Sbjct: 306 DSDLILLV--LNQSEELTEEDRQLLEATKGLKRVILLNKMDLPTKLDPNELQELVPAEEI 363 Query: 343 --ISSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399 +S + GL++L KI + + + + S+ RH+ L Q L+ +N + Sbjct: 364 LSVSVLSNTGLDQLETKIADLFFGGQTGEKDATYISNTRHIALLDQAALSLQEV-INGIE 422 Query: 400 CGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G+ D++ ++ LG+I G ++L+ +FS+FC+GK Sbjct: 423 AGMPVDLVQIDMTRCWDYLGEIVGDSVQDELITQLFSQFCLGK 465 >gi|254520702|ref|ZP_05132758.1| tRNA modification GTPase TrmE [Clostridium sp. 7_2_43FAA] gi|226914451|gb|EEH99652.1| tRNA modification GTPase TrmE [Clostridium sp. 7_2_43FAA] Length = 459 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 160/461 (34%), Positives = 258/461 (55%), Gaps = 26/461 (5%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGLD- 57 E +TI A+ST I+IIR+SG ++ I + K + ++RY +D Sbjct: 2 KEFDTICAISTAIGEGGIAIIRVSGDEALEIVSKIFRAKSGKDIRDMKTYTMRYGHIVDI 61 Query: 58 --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 ++D+ ++ P+SFT ED+ E + HGG+ N +LE + K R+A PGEF++ Sbjct: 62 DKEDLIDEVIISYMKGPKSFTAEDTVEINCHGGVTSTNKVLEMVIK-AGARIAEPGEFTK 120 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG+IDL +AE++ DLI+++TE+ + ++ +G LS + + L ++ + IE Sbjct: 121 RAFLNGRIDLSQAEAVMDLITAKTELAMKSALMQSTGSLSKKINKLREYLLNVLALIEYA 180 Query: 176 LDFSEE-EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234 +DF+E+ E+V V + + +D+S + G+IIR+G + I+G N GKSS Sbjct: 181 VDFTEDDEEVDPTIPLRVKDSLEKACDDMSKLLKGADEGKIIRDGLSLAIVGKPNVGKSS 240 Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294 L N L K+ AIVTDI GTTRDV+ ++L+G VKI DTAGIRET+DIVEK G++++ Sbjct: 241 LLNVLLKEKRAIVTDIAGTTRDVIEEYINLDGIPVKIIDTAGIRETEDIVEKIGVEKSKE 300 Query: 295 EVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTKSDLYS----TYTEEYDHL 342 ++ ADL+LL+ ++S +E I KN + I + K DL + + ++++ Sbjct: 301 KINEADLVLLV--LDSSRELDKEDIEIIEAIKNKNSIVLLNKIDLENKLDKSLLNNFENI 358 Query: 343 ISSFTGE--GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC 400 I E G++ L N+IK++ N I S+ RH L + + A + K+ Sbjct: 359 IKISAKEDVGIDGLKNEIKNMFFNGKIDSESLIVSNSRHKQALIRAKENCDDALIRVKNN 418 Query: 401 G-LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LD+I+ + A +LG+ITG E L++ IF +FC GK Sbjct: 419 EFLDLISIYVTAALKALGEITGSELEEDLVNKIFKEFCCGK 459 >gi|218900625|ref|YP_002449036.1| tRNA modification GTPase TrmE [Bacillus cereus G9842] gi|228905428|ref|ZP_04069383.1| tRNA modification GTPase mnmE [Bacillus thuringiensis IBL 4222] gi|228968636|ref|ZP_04129619.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar sotto str. T04001] gi|218540589|gb|ACK92983.1| tRNA modification GTPase TrmE [Bacillus cereus G9842] gi|228791065|gb|EEM38683.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar sotto str. T04001] gi|228854248|gb|EEM98951.1| tRNA modification GTPase mnmE [Bacillus thuringiensis IBL 4222] Length = 458 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 146/459 (31%), Positives = 254/459 (55%), Gaps = 24/459 (5%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLD---G 58 E +TI A+ST AI+I+R+SG + + I K K P ++ Y +D Sbjct: 2 EFDTIAAISTALGEGAIAIVRVSGDDAVEKVDRIFKGKDLTEVPSH-TIHYGHIVDLDTN 60 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 +++++ ++ + +P +FT E+ E + HGG+ VN +L+ L +RLA PGEF++RAF Sbjct: 61 QVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAF 119 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG+IDL +AE++ DLI ++T+ +++ M G LS L G+ ++ + +E ++D+ Sbjct: 120 LNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGRLRQEILETLAHVEVNIDY 179 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E +DV+ + ++ ++++I + K G+I+R G I+G N GKSSL N+ Sbjct: 180 PEYDDVEEMTHNILIEKATHVRSEIEKILETSKQGKILREGIATAIIGRPNVGKSSLLNS 239 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L ++ AIVTDI GTTRDV+ +++ G +K+ DTAGIRET+D+VE+ G++R+ + Sbjct: 240 LVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSKEMMSQ 299 Query: 299 ADLILLL----KEINSKKEISFP--KNIDFIFIGTKSDLYSTYTEEY-------DHLISS 345 ADL+L++ + + ++ E F + DFI I K+DL E + +I++ Sbjct: 300 ADLVLVVVNYSEALTNEDEDLFHAVQGKDFIVIVNKTDLPQAIDMERVTELAAGNRVITT 359 Query: 346 --FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCG 401 +G++EL I + + S+ RH+ L+Q + + + E Sbjct: 360 SLIEEQGIDELEKAIADLFFEGTIDSADMTYVSNARHIGLLTQAGQTIGDAIEAIENGVP 419 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+ITG E L+D +FS+FC+GK Sbjct: 420 IDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458 >gi|260662533|ref|ZP_05863428.1| tRNA modification GTPase TrmE [Lactobacillus fermentum 28-3-CHN] gi|260553224|gb|EEX26167.1| tRNA modification GTPase TrmE [Lactobacillus fermentum 28-3-CHN] Length = 462 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 157/468 (33%), Positives = 256/468 (54%), Gaps = 37/468 (7%) Query: 2 NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLD--- 57 N E++TI A+ST ISIIR+SG V I K K K+ ++ Y +D Sbjct: 3 NSEQDTIAAISTPVGEGGISIIRVSGDQALDVVSRIFKGKDLHQVKSHTINYGHIIDPAS 62 Query: 58 GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 G +D+ ++ V +P+++T ED E + HGG+ N L+ L RLA PGE+++RA Sbjct: 63 GETVDEVMVSVMLAPKTYTKEDVVEINCHGGLLATNRALQ-LTLTNGARLAEPGEYTKRA 121 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NG++DL +AE++ DLI ++T+ ++++ + G+LS L + + + +E ++D Sbjct: 122 FLNGRLDLSQAEAVMDLIRAKTDKSMKVALNQLDGDLSRLIKALRQDILDVLAQVEVNID 181 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 + E + V+ ++K + ++ + + + K G+++R+G I+G N GKSSL N Sbjct: 182 YPEYDAVEEMTTKMLKEKASEVRQRLETLLQTAKEGKVLRDGLATAIIGRPNVGKSSLLN 241 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 AL +D AIVT++ GTTRDV+ +++ G +K+ DTAGIR TDD VEK G++R+ +E Sbjct: 242 ALLHEDKAIVTEVAGTTRDVIEEYVNVAGVPLKLIDTAGIRHTDDTVEKIGVERSKQAIE 301 Query: 298 NADLILLL--------KEINSKKEISFPKNIDFIFIGTKSDLYS-------TYTEEYDHL 342 ADLILLL +E + E + K IF K+DL + T D + Sbjct: 302 TADLILLLIDSSRLLTEEDRALIEATAQKPRMVIF--NKTDLPAQVDLAELTELVNGDPV 359 Query: 343 ISSFTGE--GLEELINKI------KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS 394 I + E G++EL I + I SN+ + ++ RH+ L Q V L A Sbjct: 360 IQTSILEHAGMQELGQAIAHRFFNEGIESNRGAVMV----TNARHIGLLHQAVDSLN-AV 414 Query: 395 LNEKDCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L + G+ D++ ++ A +LG+ITG ++LLD +FS+FC+GK Sbjct: 415 LEGIEAGMPVDLVQIDMTDAWNTLGEITGQTYQDELLDQLFSQFCLGK 462 >gi|306827423|ref|ZP_07460709.1| tRNA modification GTPase TrmE [Streptococcus pyogenes ATCC 10782] gi|304430368|gb|EFM33391.1| tRNA modification GTPase TrmE [Streptococcus pyogenes ATCC 10782] Length = 458 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 145/460 (31%), Positives = 259/460 (56%), Gaps = 24/460 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55 + E +TI A+ST AI I+RLSG + + + K K + AS +G Sbjct: 3 ITKEFDTITAISTPLGEGAIGIVRLSGTDALAIAQSVFKGKN-LEQVASHTINYGHIINP 61 Query: 56 LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 G I+D+ ++ V +P++FT E+ E + HGGIAV N IL+ L + R+A PGEF++ Sbjct: 62 KTGTIIDEVMVSVMLAPKTFTRENVVEINTHGGIAVTNEILQLLIRQ-GARMAEPGEFTK 120 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG++DL +AE++ D+I ++T+ ++++ + G LS L ++ + + +E + Sbjct: 121 RAFLNGRVDLTQAEAVMDIIRAKTDKAMTIAVKQLDGSLSQLINDTRQEILNTLAQVEVN 180 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +D+ E +DV+ ++ + ++ + + + K G+I+R G I+G N GKSSL Sbjct: 181 IDYPEYDDVEEMTTALLREKTQEFQSLLENLLRTAKRGKILREGLSTAIIGRPNVGKSSL 240 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N L ++D AIVTDI GTTRDV+ ++++G +K+ DTAGIRETDD+VE+ G++R+ Sbjct: 241 LNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAGIRETDDLVEQIGVERSKKA 300 Query: 296 VENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEEY---DHL-ISS 345 ++ ADL+LL+ + K ++ ++ + I + K+DL E D++ IS Sbjct: 301 LQEADLVLLVLNASEKLTDQDRALLNLSQDSNRIILLNKTDLEQKIELEQLPDDYIPISV 360 Query: 346 FTGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK---DC 400 T + + + ++I + + + + S+ RH+ + + V+ LE ++N+ Sbjct: 361 LTNQNINLIEDRINQLFFDNAGLVEQDATYLSNARHISLIEKAVQSLE--AVNDGLALGM 418 Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+ITG ++L+ +FS+FC+GK Sbjct: 419 PVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 458 >gi|323351499|ref|ZP_08087153.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis VMC66] gi|322121985|gb|EFX93711.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis VMC66] Length = 457 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 151/463 (32%), Positives = 260/463 (56%), Gaps = 30/463 (6%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLDGR 59 + E +TI A+ST AI I+RLSG F + + I K K ++ +L Y +D + Sbjct: 2 ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKNLSKVESHTLNYGHIVDPQ 61 Query: 60 ---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 ILD+ +L SP++FT ED E + HGGIAV N IL+ LA R+A PGEF++R Sbjct: 62 NQEILDEVMLGAMRSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARMAEPGEFTKR 120 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NG++DL +AE++ D+I ++T+ +++ + G LS+L ++ + + +E ++ Sbjct: 121 AFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQEILNTLAQVEVNI 180 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D+ E +DV+ +++ + + +S+ ++ + G+I+R G I+G N GKSSL Sbjct: 181 DYPEYDDVEEMTTQLMREKTAEFETLLSNLLNTARRGKILREGISTAIIGRPNVGKSSLL 240 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N L ++D AIVTDI GTTRDV+ ++++G +K+ DTAGIRETDD+VE+ G++R+ + Sbjct: 241 NNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEQIGVERSKKAL 300 Query: 297 ENADLILLLKEINSKK----------EISFPKNIDFIFIGTKSDLYSTYTEEYDHL---- 342 + ADL+LL+ +N+ + EIS N I + K+DL E D L Sbjct: 301 QEADLVLLV--LNASEPLTDQDRQLLEISQVSN--RIVLLNKTDLEEKI--ELDQLPTDV 354 Query: 343 --ISSFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-E 397 IS + ++++ +I + + + + S+ RH+ + + + L+ + E Sbjct: 355 IKISVLHNQNIDKIEERINQLFFENAGIVEQDATYLSNARHISLIEKALESLQAVNQGLE 414 Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ ++ LG+ITG ++L+ +FS+FC+GK Sbjct: 415 MGMPVDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 457 >gi|333031364|ref|ZP_08459425.1| tRNA modification GTPase mnmE [Bacteroides coprosuis DSM 18011] gi|332741961|gb|EGJ72443.1| tRNA modification GTPase mnmE [Bacteroides coprosuis DSM 18011] Length = 465 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 158/467 (33%), Positives = 251/467 (53%), Gaps = 36/467 (7%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC---KKKKPFPRKASLRYFFG--LDGR 59 ++TI A++T A AI IR+SG + E I KK K + + FG +D Sbjct: 4 QDTICAIAT-AQGGAIGTIRVSGKDAITITEKIFRPFKKDKILHEQPAYTLTFGKIIDHE 62 Query: 60 -ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 ++D+ L+ +F +P SFTGE+S E HG ++ ++E L K R A PGE+++RAF Sbjct: 63 EVIDEVLISLFKAPHSFTGENSVEITCHGSTYILQKVMELLIK-NGCRTAQPGEYTQRAF 121 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NGK+DL +AE++ADLI+S + RL+M M G S + ++L HI S IE +LDF Sbjct: 122 LNGKMDLSQAEAVADLIASTSAATHRLAMSQMRGGFSKELAELRNQLLHITSMIELELDF 181 Query: 179 SEEEDVQNFSSKEVLNDIL-FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 SEE DV+ F++++ L + ++ IS + +G I+NG + I+G +NAGKS+L N Sbjct: 182 SEE-DVE-FANRDQLKALADKIEQVISKLTNSFSVGNAIKNGVPVAIIGETNAGKSTLLN 239 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 AL +D AIV++I GTTRDV+ +++ G + DTAGIRET D +E GI+RTF +++ Sbjct: 240 ALLNEDKAIVSNIHGTTRDVIEDTMNIGGITFRFIDTAGIRETHDTIESLGIERTFQKLD 299 Query: 298 NADLILLL-------KEINSKKEISFPK--NIDFIFIGTKSDLY---------STYTEEY 339 A+++L + ++I E P+ + I + KS+L + Y Sbjct: 300 QAEIVLWVIDAPTATEQIQQLAEKIVPRAQSKQLILVFNKSELINESERKGLEALAQTHY 359 Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPF-----SIPSHKRHLYHLSQTVRYLEMAS 394 L S F +E + +++ +L+N LP I ++ RH L++ + + Sbjct: 360 PSLTSIFISAKEKEGVEQLEKLLTNS-ANLPTVTQNDVIVTNMRHYEALTKALEAIHRVQ 418 Query: 395 LN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E D +++++R L I G V + +L IF FCIGK Sbjct: 419 DGLEMQISGDFLSQDIRECIFHLNDIAGEVTNDMVLQNIFKNFCIGK 465 >gi|83591335|ref|YP_431344.1| tRNA modification GTPase TrmE [Moorella thermoacetica ATCC 39073] gi|123523726|sp|Q2RFI8|MNME_MOOTA RecName: Full=tRNA modification GTPase mnmE gi|83574249|gb|ABC20801.1| tRNA modification GTPase trmE [Moorella thermoacetica ATCC 39073] Length = 462 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 155/464 (33%), Positives = 244/464 (52%), Gaps = 34/464 (7%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK----PFPRKASLRYFFGLD---G 58 +TI A++T ISIIRLSG + + K K R +LR F +D G Sbjct: 4 DTIAALATPPGEGGISIIRLSGSQAIAIVAKVFKPVKGPDLTTTRSHTLRLGFIIDPVSG 63 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 LD+ L+ V +P S+T ED E + HGG + +L+ L RLA PGEF+RRAF Sbjct: 64 ESLDEVLVSVMRAPHSYTAEDVVEINCHGGALATSRVLQ-LVLRTGARLAEPGEFTRRAF 122 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG++DL +AE++ ++I + + +++ + G LS G+ ++LT I + +EA +DF Sbjct: 123 LNGRLDLAQAEAVLEIIRARSSRGLTAALDHLRGNLSRKIGELNERLTGILAALEASMDF 182 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 EE E L D+ + + ++ + G ++ G K+ I+G N GKSSL NA Sbjct: 183 PEE---VGEVDPENLADLRRILAGVDRLLATWEEGRLLTEGLKVAIVGRPNVGKSSLLNA 239 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L ++ AIV++IPGTTRD + L L G+ ++ DTAG+RET D +E G+ R+ + Sbjct: 240 LLNQERAIVSNIPGTTRDTIEETLQLGGFTCRLIDTAGLRETADELESIGVARSKKAIAA 299 Query: 299 ADLILLLKEINS------KKEISFPKNIDFIFIGTKSDLYS-----------TYTEEYDH 341 ADL+L++ ++ + ++ + ++ I IG K DL + ++ Y Sbjct: 300 ADLVLVVVDLQTGIQDEDRRVLESVRDKVLIIIGNKLDLVAHDINKKLADLESFAGNYPR 359 Query: 342 L-ISSFTGEGLEELINKIKSILSNKFKKLPFSIP--SHKRHLYHLSQTVRYLEMASLNEK 398 + +S+ G+GL+EL K++ I+ P ++ RH L +L A + Sbjct: 360 VAVSALKGKGLDELARKVQEIVLGGRALAGSDEPLITNARHRAALENCREHLASA-IKAW 418 Query: 399 DCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + GL D+IA +L A+ LG+I G E LLD IFS FCIGK Sbjct: 419 EEGLPEDLIAIDLWSAADYLGEIIGTTAREDLLDRIFSDFCIGK 462 >gi|184156315|ref|YP_001844655.1| GTPase [Lactobacillus fermentum IFO 3956] gi|227514112|ref|ZP_03944161.1| tRNA modification GTP-binding protein TrmE [Lactobacillus fermentum ATCC 14931] gi|183227659|dbj|BAG28175.1| GTPase [Lactobacillus fermentum IFO 3956] gi|227087483|gb|EEI22795.1| tRNA modification GTP-binding protein TrmE [Lactobacillus fermentum ATCC 14931] gi|299783731|gb|ADJ41729.1| tRNA modification GTP-binding protein TrmE [Lactobacillus fermentum CECT 5716] Length = 462 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 157/468 (33%), Positives = 256/468 (54%), Gaps = 37/468 (7%) Query: 2 NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLD--- 57 N E++TI A+ST ISIIR+SG V I K K K+ ++ Y +D Sbjct: 3 NSEQDTIAAISTPVGEGGISIIRVSGDQALDVVSRIFKGKDLHQVKSHTINYGHIIDPAS 62 Query: 58 GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 G +D+ ++ V +P+++T ED E + HGG+ N L+ L RLA PGE+++RA Sbjct: 63 GETVDEVMVSVMLAPKTYTKEDVVEINCHGGLLATNRALQ-LTLTNGARLAEPGEYTKRA 121 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NG++DL +AE++ DLI ++T+ ++++ + G+LS L + + + +E ++D Sbjct: 122 FLNGRLDLSQAEAVMDLIRAKTDKSMKVALNQLDGDLSRLIKALRQDILDVLAQVEVNID 181 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 + E + V+ ++K + ++ + + + K G+++R+G I+G N GKSSL N Sbjct: 182 YPEYDAVEEMTTKMLKEKASEVRQRLETLLQTAKEGKVLRDGLATAIIGRPNVGKSSLLN 241 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 AL +D AIVT++ GTTRDV+ +++ G +K+ DTAGIR TDD VEK G++R+ +E Sbjct: 242 ALLHEDKAIVTEVAGTTRDVIEEYVNVAGVPLKLIDTAGIRHTDDTVEKIGVERSKQAIE 301 Query: 298 NADLILLL--------KEINSKKEISFPKNIDFIFIGTKSDLYS-------TYTEEYDHL 342 ADLILLL +E + E + K IF K+DL + T D + Sbjct: 302 TADLILLLIDSSRPLTEEDRALIEATAQKPRMVIF--NKTDLPAQVDLAELTELVNGDPV 359 Query: 343 ISSFTGE--GLEELINKI------KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS 394 I + E G++EL I + I SN+ + ++ RH+ L Q V L A Sbjct: 360 IQTSILEHAGMQELGQAIAHRFFNEGIESNRGAVM----VTNARHIGLLHQAVDSLN-AV 414 Query: 395 LNEKDCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L + G+ D++ ++ A +LG+ITG ++LLD +FS+FC+GK Sbjct: 415 LEGIEAGMPVDLVQIDMTDAWNTLGEITGQTYQDELLDQLFSQFCLGK 462 >gi|255600342|ref|XP_002537439.1| gtpase mss1/trme, putative [Ricinus communis] gi|223516353|gb|EEF24944.1| gtpase mss1/trme, putative [Ricinus communis] Length = 416 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 134/406 (33%), Positives = 222/406 (54%), Gaps = 21/406 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A++T I ++R+SGP + I P PR A+ F D ++D+G+ Sbjct: 11 DTIAAIATAPGAGGIGVVRVSGPLAADIATQILGHC-PAPRHAAYLPFLQADTTLIDRGI 69 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 I FP+P S+TGED E HGG A++ +L + R A GEF++RA+ N K+DL Sbjct: 70 AIYFPNPHSYTGEDVLELQAHGGTALMQILLARCIEC-GARHAQAGEFTQRAYLNDKLDL 128 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI++ T R ++ +SGE S + +L +R ++EA LDF EEE + Sbjct: 129 AQAEAVADLINAATVEAARSAVRSLSGEFSQAIQTLLQQLVDLRMYVEACLDFPEEE-ID 187 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 + VL+ + + + Q + G ++R G +V++G N GKSSL NAL+ ++VA Sbjct: 188 FITQGRVLDKLQANQAALQHIFDQARQGVLLREGINVVLIGQPNVGKSSLLNALSGEEVA 247 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVT I GTTRD + + +EG + + DTAG+RET+D VE+ GI RT+ +E A + LLL Sbjct: 248 IVTPIAGTTRDTIKSVIQIEGVPLHVIDTAGLRETEDTVEQVGIARTWKAIETAHVALLL 307 Query: 306 KEINSKKEIS---------FPKNIDFIFIGTKSDLY--STYTEEYDH----LISSFTGEG 350 ++S+ I P + +++ K D+ ++ E++++ +S+ TG+G Sbjct: 308 --VDSQHGIGAQEKAILHKLPPEVKKVWVHNKIDVSRETSRIEKHENEQHVFLSAKTGDG 365 Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396 + L + I+ + + + RHL L + ++L+ A L Sbjct: 366 IASLQKTLLEIVGYQPGGEGVFM-ARARHLQALEEVEQHLDQAMLQ 410 >gi|194333061|ref|YP_002014921.1| tRNA modification GTPase TrmE [Prosthecochloris aestuarii DSM 271] gi|194310879|gb|ACF45274.1| tRNA modification GTPase TrmE [Prosthecochloris aestuarii DSM 271] Length = 476 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 155/466 (33%), Positives = 250/466 (53%), Gaps = 31/466 (6%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK----PFPRKASLRYFFG--LD 57 E + I A++T A+S++R+SG F + + + K P FG D Sbjct: 13 EGDPIAAIATPVGVGALSVVRMSGGGVFAIADKVFTKAHAPEVPIADSPGYTAHFGRLYD 72 Query: 58 GRIL-DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 G ++ D+ +++VF +P SFT E+ E HGG V +L+ L RLA PGEF+RR Sbjct: 73 GDLMVDEVIVLVFRAPNSFTVENMVEITCHGGPVVTRHVLQLLLD-NGCRLAQPGEFTRR 131 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NG+IDLLEAE++ ++I + +E R ++ M G LS ++L + +E +L Sbjct: 132 AFINGRIDLLEAEAIGEMIHARSESAYRTAVNQMKGGLSGKLDTLRERLLTSCAMLELEL 191 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 DFSEE DV+ S E+ + + L+ ++ + + G ++ G I+G NAGKS+L Sbjct: 192 DFSEE-DVRFQSRDELTDQVERLQCEVGQLVDSYQHGRLLSEGVATAIIGRPNAGKSTLL 250 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 NAL ++ AIV+ +PGTTRD + + + +++DTAG+RE + +E EGI+R++ ++ Sbjct: 251 NALLGEERAIVSHMPGTTRDYIEECFVYDKTMFRLTDTAGLREAVEEIEHEGIRRSYEKI 310 Query: 297 ENADLILLLKEINS---KKEISFPKNIDFIFIGTKSDLYSTYT------EEYDHLISSFT 347 ADLIL L +I++ +EI+ + I + GTK + + T EE ++ T Sbjct: 311 AQADLILYLMDISAGDFAEEIAAIRTIAAQYPGTKMLVAANKTDRTASCEERMQMVGQET 370 Query: 348 G-----------EGLEELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMA-S 394 G EGL+EL + ++ N K S+ + RH L L+ A Sbjct: 371 GCMVLGISALQQEGLDELKKAMGAMTENLDKLHDASVLVTSMRHYEALRNASDALQNARE 430 Query: 395 LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L +++ + IA LR A +G+ITG V E++L++IF +FCIGK Sbjct: 431 LIDREEETEFIAFELRSALDYVGEITGKVVSEEVLNVIFDRFCIGK 476 >gi|125718082|ref|YP_001035215.1| tRNA modification GTPase TrmE [Streptococcus sanguinis SK36] gi|166234828|sp|A3CNB0|MNME_STRSV RecName: Full=tRNA modification GTPase mnmE gi|125497999|gb|ABN44665.1| tRNA modification GTPase, possibly iron-binding, putative [Streptococcus sanguinis SK36] Length = 457 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 147/459 (32%), Positives = 259/459 (56%), Gaps = 22/459 (4%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLDGR 59 + E +TI A+ST AI I+RLSG F + + I K K ++ +L Y +D + Sbjct: 2 ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKNLSEVESHTLNYGHIVDPQ 61 Query: 60 ---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 ILD+ +L SP++FT ED E + HGGIAV N IL+ LA R+A PGEF++R Sbjct: 62 NQEILDEVMLGAMRSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARMAEPGEFTKR 120 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NG++DL +AE++ D+I ++T+ +++ + G LS+L ++ + + +E ++ Sbjct: 121 AFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQEILNTLAQVEVNI 180 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D+ E +DV+ +++ + + +S+ ++ + G+I+R G I+G N GKSSL Sbjct: 181 DYPEYDDVEEMTTQLMREKTAEFEALLSNLLNTARRGKILREGISTAIIGRPNVGKSSLL 240 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N L ++D AIVTDI GTTRDV+ ++++G +K+ DTAGIRETDD+VE+ G++R+ + Sbjct: 241 NNLLREDKAIVTDIEGTTRDVIEEYVNIKGLPLKLIDTAGIRETDDLVEQIGVERSKKAL 300 Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------IS 344 + ADL+LL+ + ++ + K+ + I + K+DL E D L IS Sbjct: 301 QEADLVLLVLNASEPLTDQDRQLLEISKDSNRIVLLNKTDLEEKI--ELDLLPTDVIKIS 358 Query: 345 SFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCG 401 + ++++ +I + + + + S+ RH+ + + + L+ + E Sbjct: 359 VLHNQNIDKIEERINQLFFENAGIVEQDATYLSNARHISLIEKALESLQAVNQGLEMGMP 418 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ ++ LG+ITG ++L+ +FS+FC+GK Sbjct: 419 VDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 457 >gi|325978110|ref|YP_004287826.1| tRNA modification GTPase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325178038|emb|CBZ48082.1| tRNA modification GTPase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 457 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 154/469 (32%), Positives = 262/469 (55%), Gaps = 42/469 (8%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD- 57 + +E +TI A+ST AI I+RLSG + + + + K + AS +G +D Sbjct: 2 ITNEFDTIAAISTPLGEGAIGIVRLSGTEALAIAQKVYRGKD-LNKVASHTINYGHIVDP 60 Query: 58 --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 +LD+ ++ V +P++FT E+ E + HGG+AV N IL+ L RLA PGEF++ Sbjct: 61 NTDEVLDEVMVSVMLAPKTFTCENVVEINTHGGVAVTNEILQ-LVLRQGARLAEPGEFTK 119 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG++DL +AE++ D+I ++T+ ++++ + G LS L ++ + + +E + Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSQLINDTRQEILNTLAQVEVN 179 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +D+ E +DV+ ++ + + + + + K G+I+R G I+G N GKSSL Sbjct: 180 IDYPEYDDVEEMTTALIREKTQEFQELLENLLRTAKRGKILREGLSTAIIGRPNVGKSSL 239 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N L ++D AIVTDI GTTRDV+ ++++G +K+ DTAGIRETDD+VEK G++R+ Sbjct: 240 LNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLVDTAGIRETDDVVEKIGVERSKKA 299 Query: 296 VENADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTYTEEYDHL----- 342 +E ADL+LL+ +NS + ++ K+ + I + K+DL E D L Sbjct: 300 LEEADLVLLV--LNSSEPLTNQDRALLELSKDSNRIILLNKTDLPEKI--EADQLPDDVI 355 Query: 343 -ISSFTGEG---LEELINKI----KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS 394 IS + +EE IN++ I+ L S+ RH+ + + V+ L+ + Sbjct: 356 RISVLKNQNIDVIEERINQLFFDNAGIVEKDATYL-----SNARHISLIEKAVQSLQ--A 408 Query: 395 LNEK-DCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +NE + G+ D++ +L LG+ITG ++L+ +FS+FC+GK Sbjct: 409 VNEGLELGMPVDLLQIDLTRCWEILGEITGDAAPDELITKLFSQFCLGK 457 >gi|30023508|ref|NP_835139.1| tRNA modification GTPase TrmE [Bacillus cereus ATCC 14579] gi|218234443|ref|YP_002370259.1| tRNA modification GTPase TrmE [Bacillus cereus B4264] gi|228924229|ref|ZP_04087500.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228961748|ref|ZP_04123351.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar pakistani str. T13001] gi|229112897|ref|ZP_04242428.1| tRNA modification GTPase mnmE [Bacillus cereus Rock1-15] gi|229130730|ref|ZP_04259683.1| tRNA modification GTPase mnmE [Bacillus cereus BDRD-Cer4] gi|229148034|ref|ZP_04276373.1| tRNA modification GTPase mnmE [Bacillus cereus BDRD-ST24] gi|296505912|ref|YP_003667612.1| tRNA modification GTPase TrmE [Bacillus thuringiensis BMB171] gi|46577419|sp|Q814F6|MNME_BACCR RecName: Full=tRNA modification GTPase mnmE gi|29899069|gb|AAP12340.1| Thiophene and furan oxidation protein ThdF [Bacillus cereus ATCC 14579] gi|218162400|gb|ACK62392.1| tRNA modification GTPase TrmE [Bacillus cereus B4264] gi|228635459|gb|EEK91950.1| tRNA modification GTPase mnmE [Bacillus cereus BDRD-ST24] gi|228652747|gb|EEL08632.1| tRNA modification GTPase mnmE [Bacillus cereus BDRD-Cer4] gi|228670576|gb|EEL25889.1| tRNA modification GTPase mnmE [Bacillus cereus Rock1-15] gi|228797942|gb|EEM44952.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar pakistani str. T13001] gi|228835447|gb|EEM80817.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|296326964|gb|ADH09892.1| tRNA modification GTPase TrmE [Bacillus thuringiensis BMB171] Length = 458 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 146/459 (31%), Positives = 253/459 (55%), Gaps = 24/459 (5%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLD---G 58 E +TI A+ST AI+I+R+SG + + I K K P ++ Y +D Sbjct: 2 EFDTIAAISTALGEGAIAIVRVSGDDAVEKVDRIFKGKDLTEVPSH-TIHYGHIVDLDTN 60 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 +++++ ++ + +P +FT E+ E + HGG+ VN +L+ L +RLA PGEF++RAF Sbjct: 61 QVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAF 119 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG+IDL +AE++ DLI ++T+ +++ M G LS L G ++ + +E ++D+ Sbjct: 120 LNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGLLRQEILETLAHVEVNIDY 179 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E +DV+ + ++ ++++I + K G+I+R G I+G N GKSSL N+ Sbjct: 180 PEYDDVEEMTHNILIEKATHVRSEIEKILETSKQGKILREGIATAIIGRPNVGKSSLLNS 239 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L ++ AIVTDI GTTRDV+ +++ G +K+ DTAGIRET+D+VE+ G++R+ + Sbjct: 240 LVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSKEMMSQ 299 Query: 299 ADLILLL----KEINSKKEISFP--KNIDFIFIGTKSDLYSTYTEEY-------DHLISS 345 ADL+L++ + + ++ E F + DFI I K+DL E + +I++ Sbjct: 300 ADLVLVVVNYSEALTNEDEDLFRAVQGKDFIVIVNKTDLPQAIDMERVTELAAGNRVITT 359 Query: 346 --FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCG 401 +G++EL I + + S+ RH+ L+Q + + + E Sbjct: 360 SLIEEQGIDELEKAIADLFFEGTIDSADMTYVSNARHIGLLTQAGKTIGDAVEAIENGVP 419 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+ITG E L+D +FS+FC+GK Sbjct: 420 IDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458 >gi|94988539|ref|YP_596640.1| tRNA modification GTPase TrmE [Streptococcus pyogenes MGAS9429] gi|166234823|sp|Q1JLX3|MNME_STRPC RecName: Full=tRNA modification GTPase mnmE gi|94542047|gb|ABF32096.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase [Streptococcus pyogenes MGAS9429] Length = 458 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 146/462 (31%), Positives = 260/462 (56%), Gaps = 28/462 (6%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD- 57 + E +TI A+ST AI I+RLSG + + + K K + AS +G +D Sbjct: 3 ITKEFDTITAISTPLGEGAIGIVRLSGTDALAIAQSVFKGKN-LEQVASHTINYGHIIDP 61 Query: 58 --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 G I+D+ ++ V +P++FT E+ E + HGGIAV N IL+ L + R+A PGEF++ Sbjct: 62 KTGTIIDEVMVSVMLAPKTFTRENVVEINTHGGIAVTNEILQLLIRQ-GARMAEPGEFTK 120 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG++DL +AE++ D+I ++T+ ++++ + G LS L ++ + + +E + Sbjct: 121 RAFLNGRVDLTQAEAVMDIIRAKTDKAMTIAVKQLDGSLSQLINDTRQEILNTLAQVEVN 180 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +D+ E +DV+ ++ + ++ + + + K G+I+R G I+G N GKSSL Sbjct: 181 IDYPEYDDVEEMTTALLREKTQEFQSLLENLLRTAKRGKILREGLSTAIIGRPNVGKSSL 240 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N L ++D AIVTDI GTTRDV+ ++++G +K+ DTAGIRETDD+VE+ G++R+ Sbjct: 241 LNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAGIRETDDLVEQIGVERSKKA 300 Query: 296 VENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEEYDHL------I 343 ++ ADL+LL+ + K ++ ++ + I + K+DL E + L I Sbjct: 301 LQEADLVLLVLNASEKLTDQDRALLNLSQDSNRIILLNKTDLEQKI--ELEQLPADLIPI 358 Query: 344 SSFTGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK--- 398 S T + + + ++I + + + + S+ RH+ + + V+ LE ++N+ Sbjct: 359 SVLTNQNINLIEDRINQLFFDNAGLVEQDATYLSNARHISLIEKAVQSLE--AVNDGLAL 416 Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+ITG ++L+ +FS+FC+GK Sbjct: 417 GMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 458 >gi|288905136|ref|YP_003430358.1| tRNA modification GTPase TrmE:Small GTP-binding protein domain [Streptococcus gallolyticus UCN34] gi|288731862|emb|CBI13427.1| tRNA modification GTPase TrmE:Small GTP-binding protein domain [Streptococcus gallolyticus UCN34] Length = 457 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 154/469 (32%), Positives = 262/469 (55%), Gaps = 42/469 (8%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD- 57 + +E +TI A+ST AI I+RLSG + + + + K + AS +G +D Sbjct: 2 ITNEFDTIAAISTPLGEGAIGIVRLSGTEALAIAQKVYRGKD-LNKVASHTINYGHIVDP 60 Query: 58 --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 +LD+ ++ V +P++FT E+ E + HGG+AV N IL+ L RLA PGEF++ Sbjct: 61 DTDEVLDEVMVSVMLAPKTFTCENVVEINTHGGVAVTNEILQ-LVLRQGARLAEPGEFTK 119 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG++DL +AE++ D+I ++T+ ++++ + G LS L ++ + + +E + Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSQLINDTRQEILNTLAQVEVN 179 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +D+ E +DV+ ++ + + + + + K G+I+R G I+G N GKSSL Sbjct: 180 IDYPEYDDVEEMTTALIREKTQEFQELLENLLRTAKRGKILREGLSTAIIGRPNVGKSSL 239 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N L ++D AIVTDI GTTRDV+ ++++G +K+ DTAGIRETDD+VEK G++R+ Sbjct: 240 LNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLVDTAGIRETDDVVEKIGVERSKKA 299 Query: 296 VENADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTYTEEYDHL----- 342 +E ADL+LL+ +NS + ++ K+ + I + K+DL E D L Sbjct: 300 LEEADLVLLV--LNSSEPLTNQDRALLELSKDSNRIILLNKTDLPEKI--EADQLPDDVI 355 Query: 343 -ISSFTGEG---LEELINKI----KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS 394 IS + +EE IN++ I+ L S+ RH+ + + V+ L+ + Sbjct: 356 RISVLKNQNIDVIEERINQLFFDNAGIVEKDATYL-----SNARHISLIEKAVQSLQ--A 408 Query: 395 LNEK-DCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +NE + G+ D++ +L LG+ITG ++L+ +FS+FC+GK Sbjct: 409 VNEGLELGMPVDLLQIDLTRCWEILGEITGDAAPDELITKLFSQFCLGK 457 >gi|91214599|ref|ZP_01251572.1| tRNA modification GTPase [Psychroflexus torquis ATCC 700755] gi|91187026|gb|EAS73396.1| tRNA modification GTPase [Psychroflexus torquis ATCC 700755] Length = 470 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 160/477 (33%), Positives = 259/477 (54%), Gaps = 53/477 (11%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGLDG-RI 60 +TI A++T + AI++IR+SG ++C + + K + +L+ DG RI Sbjct: 5 DTIIALATASGNGAIAVIRVSGNEALELCSPLFEAKSGISILDQKSHTLQLGTIQDGQRI 64 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+ L+ VF +S+TGE + E HG + I++ L K R A PGEF+ RAF N Sbjct: 65 LDEVLVSVFRGYKSYTGEPTVEISCHGSSFIQKEIIQLLIK-KGCRTAQPGEFTLRAFLN 123 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GK+DL +AE++ADL+SS+ +L+M+ M G ++ + +L S +E +LDFSE Sbjct: 124 GKMDLSQAEAVADLVSSDNAASHQLAMQQMRGGFTNQIQELRQELLDFASLMELELDFSE 183 Query: 181 EEDVQNFSSKEVLND-ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 E DV+ F+++E +L ++ +S I +G +I+NG + I+G N GKS+L NAL Sbjct: 184 E-DVE-FANREQFQALVLKIQKVLSRLIDSFAVGNVIKNGIPVAIVGEPNVGKSTLLNAL 241 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 ++ AIV++I GTTRD + ++ + G + DTAGIRET D +E GI+RTF +++ + Sbjct: 242 LNEERAIVSEIAGTTRDTIEDEISMGGIGFRFIDTAGIRETQDTIEGLGIQRTFEKIKQS 301 Query: 300 DLILLLKEINSKK-----------------------EISFPKNIDFIFIGTKSDLYST-- 334 +I +K I+S K E FP+ F+ + K+DL S Sbjct: 302 QVI--IKLIDSPKLFDDQQKLRTTEWKRIKADIHQLETDFPER-SFLLLANKADLLSPEN 358 Query: 335 ---YTEEYDHL--ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY 389 T+E++ L IS+ G+EE+ ++ S + + + +I ++ RH L Sbjct: 359 KDLLTKEFEDLLFISAKDKTGIEEIQTRLLSFVDDGALRNNDTIVTNSRHYNAL-----L 413 Query: 390 LEMASLNEKDCGL------DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L + +N+ GL D++A ++R A G+ITG V ++LL IF+ FCIGK Sbjct: 414 LALEEINKVQEGLNENLTTDLLAIDIRQALYHFGEITGEVTNDELLGNIFANFCIGK 470 >gi|71903433|ref|YP_280236.1| tRNA modification GTPase TrmE [Streptococcus pyogenes MGAS6180] gi|123639929|sp|Q48TS5|MNME_STRPM RecName: Full=tRNA modification GTPase mnmE gi|71802528|gb|AAX71881.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase [Streptococcus pyogenes MGAS6180] Length = 458 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 146/464 (31%), Positives = 260/464 (56%), Gaps = 32/464 (6%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD- 57 + E +TI A+ST AI I+RLSG + + + K K + AS +G +D Sbjct: 3 ITKEFDTITAISTPLGEGAIGIVRLSGTDALAIAQSVFKGKN-LEQVASHTINYGHIIDP 61 Query: 58 --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 G I+D+ ++ V +P++FT E+ E + HGGIAV N IL+ L + R+A PGEF++ Sbjct: 62 KTGTIIDEVMVSVMLAPKTFTRENVVEINTHGGIAVTNEILQLLIRQ-GARMAEPGEFTK 120 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG++DL +AE++ D+I ++T+ ++++ + G LS L ++ + + +E + Sbjct: 121 RAFLNGRVDLTQAEAVMDIIRAKTDKAMTIAVKQLDGSLSQLINDTRQEILNTLAQVEVN 180 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +D+ E +DV+ ++ + ++ + + + K G+I+R G I+G N GKSSL Sbjct: 181 IDYPEYDDVEEMTTALLREKTQEFQSLLENLLRTAKRGKILREGLSTAIIGRPNVGKSSL 240 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N L ++D AIVTDI GTTRDV+ ++++G +K+ DTAGIRETDD+VE+ G++R+ Sbjct: 241 LNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAGIRETDDLVEQIGVERSKKA 300 Query: 296 VENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGE 349 ++ ADL+LL+ + K ++ + + I + K+DL E + L + Sbjct: 301 LQEADLVLLVLNASEKLTDQDRALLNLSQGSNRIILLNKTDLEQKI--ELEQLPADLI-- 356 Query: 350 GLEELINKIKSILSNKFKKLPF----------SIPSHKRHLYHLSQTVRYLEMASLNEK- 398 + L N+ +++ ++ +L F + S+ RH+ + + V+ LE ++N+ Sbjct: 357 SISVLTNQNINLIEDRINQLFFDNAGLVEQDATYLSNARHISLIEKAVQSLE--AVNDGL 414 Query: 399 --DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+ITG ++L+ +FS+FC+GK Sbjct: 415 ALGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 458 >gi|118480511|ref|YP_897662.1| tRNA modification GTPase TrmE [Bacillus thuringiensis str. Al Hakam] gi|166200468|sp|A0RLR2|MNME_BACAH RecName: Full=tRNA modification GTPase mnmE gi|118419736|gb|ABK88155.1| tRNA modification GTPase trmE [Bacillus thuringiensis str. Al Hakam] Length = 458 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 146/459 (31%), Positives = 253/459 (55%), Gaps = 24/459 (5%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLD---G 58 E +TI A+ST AI+I+R+SG + I K K P ++ Y +D Sbjct: 2 EFDTIAAISTALGEGAIAIVRVSGDDAVEKVNRIFKGKDLTEVPSH-TIHYGHIVDLDTN 60 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 +++++ ++ + +P +FT E+ E + HGG+ VN +L+ L +RLA PGEF++RAF Sbjct: 61 QVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAF 119 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG+IDL +AE++ DLI ++T+ +++ M G LS L G+ + + +E ++D+ Sbjct: 120 LNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGRLRQDILETLAHVEVNIDY 179 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E +DV+ + ++ ++++I+ + K G+I+R G I+G N GKSSL N+ Sbjct: 180 PEYDDVEEMTHNILIEKATHVRSEIAKILETSKQGKILREGIATAIIGRPNVGKSSLLNS 239 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L ++ AIVTDI GTTRDV+ +++ G +K+ DTAGIRET+D+VE+ G++R+ + Sbjct: 240 LVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSKEMMSQ 299 Query: 299 ADLILLL----KEINSKKEISFP--KNIDFIFIGTKSDLYSTYTEEY-------DHLISS 345 ADL+L++ + + ++ E F + DFI I K+DL E + +I++ Sbjct: 300 ADLVLVVVNYSEALTNEDEELFRAVQGKDFIVIVNKTDLPQAIDMERVIELAAGNRVITT 359 Query: 346 --FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCG 401 +G++EL I + + S+ RH+ L+Q + + + E Sbjct: 360 SLIEEQGIDELEKAIADLFFEGTIDSADVTYVSNARHIGLLTQAGKTIGDAIEAIENGVP 419 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+ITG E L+D +FS+FC+GK Sbjct: 420 IDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458 >gi|254456774|ref|ZP_05070202.1| tRNA modification GTPase TrmE [Campylobacterales bacterium GD 1] gi|207085566|gb|EDZ62850.1| tRNA modification GTPase TrmE [Campylobacterales bacterium GD 1] Length = 446 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 141/448 (31%), Positives = 247/448 (55%), Gaps = 14/448 (3%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63 + +TI A++T +I+IIR+SG ++ + + KK PR A+L ++D+ Sbjct: 2 DNDTISAIATANGIGSIAIIRISGDRALEIAKKLTHKKDFSPRYATLTTVHNKKNELIDE 61 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 ++I F +P SFT ED E HGG V IL+ ++ RLAN GEFS+RAF NG+I Sbjct: 62 SIVIYFKAPYSFTAEDVVEIQCHGGFIVAQSILKATLEL-GARLANAGEFSKRAFFNGRI 120 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL EAE++A LI +++E ++ + M G L D++ HI +F E +D++EE D Sbjct: 121 DLSEAEAIAQLIEAKSEDAAKILAQQMKGSLKEYIEDIRDEIIHILAFSEVSIDYAEE-D 179 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 + K++ + + LK+ + S + + E + G+K+ I+G N GKSSL N+L + Sbjct: 180 LPEDLVKQIESKLSDLKSSLESTLLASRAREGLMQGFKVAIVGKPNVGKSSLLNSLLNYN 239 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303 AIV++I GTTRD + + + +L++I DTAGIRE +D +E+ GI+R+ ++ +D+++ Sbjct: 240 RAIVSEIAGTTRDTIEEQVKIGTHLIRIVDTAGIREANDEIERIGIERSLEAIQESDIVV 299 Query: 304 LL----KEINSKKEI------SFPKNIDFIFIGTKSDLYSTY-TEEYDHLISSFTGEGLE 352 L + ++++ E KN IF+ K DL + + TE+ + + + + + Sbjct: 300 ALFDGSRVLDAEDEQILALVDKHTKNKHVIFVKNKIDLENKFSTEDINFDLELNSKDSVT 359 Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLA 412 LI +K+I+ + S +R + + T+ +E + +D L+I + +L A Sbjct: 360 SLIESLKNIMDVNNNSDEIMLIS-QRQIMAVQNTLNNIEESFYPLQDQELEIFSFHLNEA 418 Query: 413 SVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + IT + +++LD +F FC+GK Sbjct: 419 VKEMASITRPFENDEMLDKMFGSFCLGK 446 >gi|146297756|ref|YP_001181527.1| tRNA modification GTPase TrmE [Caldicellulosiruptor saccharolyticus DSM 8903] gi|166200470|sp|A4XN51|MNME_CALS8 RecName: Full=tRNA modification GTPase mnmE gi|145411332|gb|ABP68336.1| tRNA modification GTPase trmE [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 455 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 170/459 (37%), Positives = 258/459 (56%), Gaps = 27/459 (5%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-----PFP-RKASLRYFFGLD 57 E +TI A+ST I IIR+SG + +V I K K+ P R A+L + D Sbjct: 2 EFDTIAAISTPIGTGGIGIIRISGQNSIEVAGKIIKSKRFNSIYDIPVRYAALVEVYDND 61 Query: 58 GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 +D+ +LI F +P S+TGED E HGG+ V+ ILE + K R A PGEF++RA Sbjct: 62 -EFIDQAILIKFKAPHSYTGEDVVEIQSHGGMVVLRRILEVVIK-NGARHAMPGEFTKRA 119 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NG++DL +AE++ D+I+S+TE+ ++ + + + G LS + + L ++ S IEA +D Sbjct: 120 FLNGRLDLSQAEAIIDIINSKTELLQKNAAKQLKGVLSKKIDEIAEILLNLISSIEASID 179 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 FSE E V S +E+ I I + + G I++G VI+G N GKSSL N Sbjct: 180 FSEHE-VDEISPQEIEKSIDTALEMIYRLLKTYETGRAIKSGIYTVIVGRPNVGKSSLLN 238 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 L K++ +IVTDIPGTTRDV+ LD+EG + + DTAG+R+T+DIVE+ G++RT VE Sbjct: 239 RLLKEERSIVTDIPGTTRDVIEEVLDIEGIPIILVDTAGVRQTEDIVERIGVERTLKSVE 298 Query: 298 NADLILLLKEIN--SKKEI---SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGL- 351 ADL++ + E + +K++I S KN +I + K+D ++ D + F EG+ Sbjct: 299 RADLVIFMIESDGITKEDIEIFSSIKNKKYIILVNKTDKGINISQ--DEIKKLFGKEGIF 356 Query: 352 --------EELINKI--KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401 EL+ K ++IL + + ++ RH L + +L A N Sbjct: 357 ISIAKDENLELVEKAIKEAILEQNIEGFDEVLITNLRHKELLLKAKGFLTSAKQNLYSFP 416 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LDI++ +L+ A S+ +ITG E ++D IFS FCIGK Sbjct: 417 LDILSIDLKNALDSIYQITGKNVTEDMVDRIFSMFCIGK 455 >gi|291319989|ref|YP_003515247.1| tRNA modification GTPase TrmE [Mycoplasma agalactiae] gi|290752318|emb|CBH40289.1| TRNA modification GTPase (TrmE) [Mycoplasma agalactiae] Length = 445 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 163/456 (35%), Positives = 248/456 (54%), Gaps = 35/456 (7%) Query: 6 ETIFAVSTGA-LPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYF--FG-----LD 57 +TI A+S+G + AISIIR+SGP V KK F K + FG L+ Sbjct: 4 DTITAISSGGKINQAISIIRVSGPDSVNVV------KKIFTGKVGTSHTITFGNIIDNLN 57 Query: 58 GR-ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 G ++D+ L + F +F GED+ E + HGG+ + N ILE L RLA PGEFSRR Sbjct: 58 GNEVIDEVLCMWFLGTNNFVGEDTVEINCHGGVVITNRILELLLS-NGARLAEPGEFSRR 116 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 +F NGK+DL++AE++ DLI + T Q +L+++ G+ S + D+L ++ +E + Sbjct: 117 SFLNGKMDLIKAEAINDLIHASTVSQTKLAIKKFDGKTSMYIQELKDELAYLIGEMEVSI 176 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D+ E D N + ++++ + ++N IS I + +I G KI ILG N GKSS+ Sbjct: 177 DYPEY-DFDNPFTDKLMSRLESIRNKISKTIELSQTSRMIFEGIKIAILGKPNVGKSSIL 235 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 NA+ ++D AIVTDI GTTRD++ +G L K DTAGIR+T + +EK GI ++F ++ Sbjct: 236 NAILEEDKAIVTDIAGTTRDIVEAMWQYKGLLFKFIDTAGIRDTKEKIEKIGIDKSFEQI 295 Query: 297 ENADLILLL-------KEINSK-KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTG 348 E AD++L + E +S+ K + N ++ + K DL T +E+ L S Sbjct: 296 EKADVVLHIYDPSQNDNEFDSQIKNKAHSLNKIYVPVINKKDLLETTNDEF--LYVSAKL 353 Query: 349 EGLEELINKIKSILSNKFKKLPFS---IPSHKRHLYHLSQTVRYLEMASLNEK-DCGLDI 404 L+ L K+ S+ FK + + ++ R L + Q + LE A + K D+ Sbjct: 354 NDLDPLKEKLVSV----FKNIDLNNDQYVNNSRQLALIKQAHKSLEDAIKSIKLGYDPDV 409 Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + +LR A L ITG D E LLD +F FC+GK Sbjct: 410 VIIDLRQAWSHLTDITGRADNELLLDEMFKNFCLGK 445 >gi|229547152|ref|ZP_04435877.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX1322] gi|255971528|ref|ZP_05422114.1| tRNA modification GTPase [Enterococcus faecalis T1] gi|255974478|ref|ZP_05425064.1| tRNA modification GTPase [Enterococcus faecalis T2] gi|256761833|ref|ZP_05502413.1| tRNA modification GTPase [Enterococcus faecalis T3] gi|256854960|ref|ZP_05560321.1| tRNA modification GTPase mnmE [Enterococcus faecalis T8] gi|256957036|ref|ZP_05561207.1| tRNA modification GTPase [Enterococcus faecalis DS5] gi|256960899|ref|ZP_05565070.1| tRNA modification GTPase [Enterococcus faecalis Merz96] gi|256963961|ref|ZP_05568132.1| tRNA modification GTPase [Enterococcus faecalis HIP11704] gi|257078713|ref|ZP_05573074.1| tRNA modification GTPase [Enterococcus faecalis JH1] gi|257081326|ref|ZP_05575687.1| tRNA modification GTPase [Enterococcus faecalis E1Sol] gi|257083984|ref|ZP_05578345.1| tRNA modification GTPase [Enterococcus faecalis Fly1] gi|257087814|ref|ZP_05582175.1| tRNA modification GTPase [Enterococcus faecalis D6] gi|257088459|ref|ZP_05582820.1| tRNA modification GTPase [Enterococcus faecalis CH188] gi|257421323|ref|ZP_05598313.1| tRNA modification GTPase trmE [Enterococcus faecalis X98] gi|293384792|ref|ZP_06630639.1| tRNA modification GTPase TrmE [Enterococcus faecalis R712] gi|293388148|ref|ZP_06632672.1| tRNA modification GTPase TrmE [Enterococcus faecalis S613] gi|294781227|ref|ZP_06746574.1| tRNA modification GTPase TrmE [Enterococcus faecalis PC1.1] gi|300861676|ref|ZP_07107760.1| tRNA modification GTPase TrmE [Enterococcus faecalis TUSoD Ef11] gi|307268891|ref|ZP_07550256.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX4248] gi|307273989|ref|ZP_07555199.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0855] gi|307277334|ref|ZP_07558432.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX2134] gi|307284016|ref|ZP_07564186.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0860] gi|307286637|ref|ZP_07566727.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0109] gi|307296566|ref|ZP_07576387.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0411] gi|312901323|ref|ZP_07760604.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0470] gi|312902969|ref|ZP_07762158.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0635] gi|312908837|ref|ZP_07767776.1| tRNA modification GTPase TrmE [Enterococcus faecalis DAPTO 512] gi|312952943|ref|ZP_07771799.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0102] gi|312979521|ref|ZP_07791203.1| tRNA modification GTPase TrmE [Enterococcus faecalis DAPTO 516] gi|229307734|gb|EEN73721.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX1322] gi|255962546|gb|EET95022.1| tRNA modification GTPase [Enterococcus faecalis T1] gi|255967350|gb|EET97972.1| tRNA modification GTPase [Enterococcus faecalis T2] gi|256683084|gb|EEU22779.1| tRNA modification GTPase [Enterococcus faecalis T3] gi|256709473|gb|EEU24520.1| tRNA modification GTPase mnmE [Enterococcus faecalis T8] gi|256947532|gb|EEU64164.1| tRNA modification GTPase [Enterococcus faecalis DS5] gi|256951395|gb|EEU68027.1| tRNA modification GTPase [Enterococcus faecalis Merz96] gi|256954457|gb|EEU71089.1| tRNA modification GTPase [Enterococcus faecalis HIP11704] gi|256986743|gb|EEU74045.1| tRNA modification GTPase [Enterococcus faecalis JH1] gi|256989356|gb|EEU76658.1| tRNA modification GTPase [Enterococcus faecalis E1Sol] gi|256992014|gb|EEU79316.1| tRNA modification GTPase [Enterococcus faecalis Fly1] gi|256995844|gb|EEU83146.1| tRNA modification GTPase [Enterococcus faecalis D6] gi|256997271|gb|EEU83791.1| tRNA modification GTPase [Enterococcus faecalis CH188] gi|257163147|gb|EEU93107.1| tRNA modification GTPase trmE [Enterococcus faecalis X98] gi|291077923|gb|EFE15287.1| tRNA modification GTPase TrmE [Enterococcus faecalis R712] gi|291082456|gb|EFE19419.1| tRNA modification GTPase TrmE [Enterococcus faecalis S613] gi|294451690|gb|EFG20145.1| tRNA modification GTPase TrmE [Enterococcus faecalis PC1.1] gi|295112327|emb|CBL30964.1| tRNA modification GTPase trmE [Enterococcus sp. 7L76] gi|300849137|gb|EFK76890.1| tRNA modification GTPase TrmE [Enterococcus faecalis TUSoD Ef11] gi|306495993|gb|EFM65580.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0411] gi|306502266|gb|EFM71548.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0109] gi|306503387|gb|EFM72636.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0860] gi|306505968|gb|EFM75140.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX2134] gi|306509297|gb|EFM78357.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0855] gi|306514807|gb|EFM83357.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX4248] gi|310625275|gb|EFQ08558.1| tRNA modification GTPase TrmE [Enterococcus faecalis DAPTO 512] gi|310629084|gb|EFQ12367.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0102] gi|310633637|gb|EFQ16920.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0635] gi|311287703|gb|EFQ66259.1| tRNA modification GTPase TrmE [Enterococcus faecalis DAPTO 516] gi|311291556|gb|EFQ70112.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0470] gi|315026593|gb|EFT38525.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX2137] gi|315030087|gb|EFT42019.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX4000] gi|315033580|gb|EFT45512.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0017] gi|315036245|gb|EFT48177.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0027] gi|315143559|gb|EFT87575.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX2141] gi|315148303|gb|EFT92319.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX4244] gi|315151268|gb|EFT95284.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0012] gi|315152698|gb|EFT96714.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0031] gi|315155022|gb|EFT99038.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0043] gi|315158703|gb|EFU02720.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0312] gi|315163425|gb|EFU07442.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0645] gi|315165648|gb|EFU09665.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX1302] gi|315172073|gb|EFU16090.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX1342] gi|315174206|gb|EFU18223.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX1346] gi|315579747|gb|EFU91938.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0630] gi|327536410|gb|AEA95244.1| tRNA modification GTPase TrmE [Enterococcus faecalis OG1RF] gi|329577012|gb|EGG58487.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX1467] Length = 465 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 149/463 (32%), Positives = 257/463 (55%), Gaps = 30/463 (6%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK-KKPFPRKASLRYFFG-----LD 57 E +TI A+ST AISI+RLSG + + + K + + +G + Sbjct: 7 EFDTIAAISTPPGEGAISIVRLSGEQAVAIANKVYRSGTKDLAKVPTHTIHYGHIVDPQN 66 Query: 58 GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 +++D+ +L V +P++FT ED E + HGGI VVN +L+ L + R+A PGEF++RA Sbjct: 67 DQLIDEVMLSVMRAPKTFTREDVVEINCHGGIVVVNQLLQLLLR-EGARMAEPGEFTKRA 125 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NG++DL +AE++ DLI ++T+ +++ + G LS+L ++ + + +E ++D Sbjct: 126 FLNGRMDLSQAEAVMDLIRAKTDKAMNVALNQLDGNLSALIRSLRQEILNTLAQVEVNID 185 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 + E +DV+ ++K +L F+K I ++ K G+I+R G I+G N GKSSL N Sbjct: 186 YPEYDDVEELTTKLLLEKAEFVKAQIQQLLTTAKQGKILREGLSTAIIGRPNVGKSSLLN 245 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 L +++ AIVTDI GTTRDV+ +++ G +K+ DTAGIRET+DIVE+ G++R+ + Sbjct: 246 HLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDIVERIGVERSRKALA 305 Query: 298 NADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTY-TEEYDHL------ 342 ++DLILL+ +N +E++ K + + + K DL + E L Sbjct: 306 DSDLILLV--LNQSEELTEEDRQLLEATKGLKRVILLNKMDLPTKLDPNELQELVPAEEI 363 Query: 343 --ISSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399 +S + GL++L KI + + + + S+ RH+ L Q L+ +N + Sbjct: 364 LSVSVLSNTGLDQLEAKIADLFFGGQTGEKDATYISNTRHIALLDQAALSLQEV-INGIE 422 Query: 400 CGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G+ D++ ++ LG+I G ++L+ +FS+FC+GK Sbjct: 423 AGMPVDLVQIDMTRCWDYLGEIVGDSVQDELITQLFSQFCLGK 465 >gi|78776726|ref|YP_393041.1| tRNA modification GTPase TrmE [Sulfurimonas denitrificans DSM 1251] gi|123550691|sp|Q30T75|MNME_SULDN RecName: Full=tRNA modification GTPase mnmE gi|78497266|gb|ABB43806.1| tRNA modification GTPase trmE [Sulfurimonas denitrificans DSM 1251] Length = 446 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 148/454 (32%), Positives = 243/454 (53%), Gaps = 28/454 (6%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64 ++TI A++T +I+IIR+SG ++ I K PR ASL + G ++D+ Sbjct: 3 EDTISAIATANGIGSIAIIRISGDRALEIASKITHKDNFTPRYASLSNIYDFHGELIDEA 62 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 ++I F +P SFT ED E HGG V IL+ + RLA GEFS+RAF NG+ID Sbjct: 63 IVIYFKAPFSFTAEDVVEIQCHGGFIVAQSILK-TTLLHGARLATAGEFSKRAFFNGRID 121 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++A LI +++E ++ + M G L + D L HI ++ E +D++EE D+ Sbjct: 122 LSKAEAIAQLIEAKSEDAAKILAQQMKGSLKEYVEKIRDDLIHILAYSEVSIDYAEE-DL 180 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 ++ + LK ++ + K E + G+K+ I+G N GKSSL NAL + Sbjct: 181 PEDLVMQIQAKLKELKTSLNKTLQASKAREGLMQGFKVAIIGKPNVGKSSLLNALLNYNR 240 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL- 303 AIV+DI GTTRD + + + +L++I DTAGIRE D +E+ GI+R+ + +D+++ Sbjct: 241 AIVSDIAGTTRDTIEEQVKIGTHLIRIVDTAGIREASDEIERIGIERSLEAINESDIVIA 300 Query: 304 --------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTE---EYDHLISSF 346 +L I SK + KN+ + + K DL + E+D I+S Sbjct: 301 LFDASRVADYEDEQILSLIESK---AGSKNV--LHVKNKIDLEEKFYRSSLEFDIEINS- 354 Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIA 406 EG+EELI +++I++ + S +R + + T+ Y++ A ++ L+I + Sbjct: 355 -KEGVEELILALENIMNQANTSDEMMLIS-QRQIGAVQNTLNYIDEAFEPLQEQELEIFS 412 Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 NL A + IT + +++LD +F FC+GK Sbjct: 413 FNLNEAIKEIASITRPFENDEMLDKMFGSFCLGK 446 >gi|29377753|ref|NP_816907.1| tRNA modification GTPase TrmE [Enterococcus faecalis V583] gi|227555662|ref|ZP_03985709.1| tRNA modification GTPase TrmE [Enterococcus faecalis HH22] gi|257418862|ref|ZP_05595856.1| tRNA modification GTPase [Enterococcus faecalis T11] gi|46577423|sp|Q820T0|MNME_ENTFA RecName: Full=tRNA modification GTPase mnmE gi|29345221|gb|AAO82977.1| tRNA modification GTPase TrmE [Enterococcus faecalis V583] gi|227175215|gb|EEI56187.1| tRNA modification GTPase TrmE [Enterococcus faecalis HH22] gi|257160690|gb|EEU90650.1| tRNA modification GTPase [Enterococcus faecalis T11] gi|315576168|gb|EFU88359.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0309B] gi|315582978|gb|EFU95169.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0309A] Length = 465 Score = 214 bits (546), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 149/463 (32%), Positives = 257/463 (55%), Gaps = 30/463 (6%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK-KKPFPRKASLRYFFG-----LD 57 E +TI A+ST AISI+RLSG + + + K + + +G + Sbjct: 7 EFDTIAAISTPPGEGAISIVRLSGEQAVAIANKVYRSGTKDLAKVPTHTIHYGHIVDPQN 66 Query: 58 GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 +++D+ +L V +P++FT ED E + HGGI VVN +L+ L + R+A PGEF++RA Sbjct: 67 DQLIDEVMLSVMRAPKTFTREDVVEINCHGGIVVVNQLLQLLLR-EGARMAEPGEFTKRA 125 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NG++DL +AE++ DLI ++T+ +++ + G LS+L ++ + + +E ++D Sbjct: 126 FLNGRMDLSQAEAVMDLIRAKTDKAMNVALNQLDGNLSTLIRSLRQEILNTLAQVEVNID 185 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 + E +DV+ ++K +L F+K I ++ K G+I+R G I+G N GKSSL N Sbjct: 186 YPEYDDVEELTTKLLLEKAEFVKAQIQQLLTTAKQGKILREGLSTAIIGRPNVGKSSLLN 245 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 L +++ AIVTDI GTTRDV+ +++ G +K+ DTAGIRET+DIVE+ G++R+ + Sbjct: 246 HLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDIVERIGVERSRKALA 305 Query: 298 NADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTY-TEEYDHL------ 342 ++DLILL+ +N +E++ K + + + K DL + E L Sbjct: 306 DSDLILLV--LNQSEELTEEDRQLLEATKGLKRVILLNKMDLPTKLDPNELQELVPAEEI 363 Query: 343 --ISSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399 +S + GL++L KI + + + + S+ RH+ L Q L+ +N + Sbjct: 364 LSVSVLSNTGLDQLEAKIADLFFGGQTGEKDATYISNTRHIALLDQAALSLQEV-INGIE 422 Query: 400 CGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G+ D++ ++ LG+I G ++L+ +FS+FC+GK Sbjct: 423 AGMPVDLVQIDMTRCWDYLGEIVGDSVQDELITQLFSQFCLGK 465 >gi|229051153|ref|ZP_04194697.1| tRNA modification GTPase mnmE [Bacillus cereus AH676] gi|228722216|gb|EEL73617.1| tRNA modification GTPase mnmE [Bacillus cereus AH676] Length = 458 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 146/459 (31%), Positives = 253/459 (55%), Gaps = 24/459 (5%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLD---G 58 E +TI A+ST AI+I+R+SG + + I K K P ++ Y +D Sbjct: 2 EFDTIAAISTALGEGAIAIVRVSGDDAVEKVDRIFKGKDLTEVPSH-TIHYGHIVDLDTN 60 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 +++++ ++ + +P +FT E+ E + HGG+ VN +L+ L +RLA PGEF++RAF Sbjct: 61 QVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAF 119 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG+IDL +AE++ DLI ++T+ +++ M G LS L G ++ + +E ++D+ Sbjct: 120 LNGRIDLSQAEAVIDLIRAKTDRAMNVAINQMEGRLSKLIGLLRQEILETLAHVEVNIDY 179 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E +DV+ + ++ ++++I + K G+I+R G I+G N GKSSL N+ Sbjct: 180 PEYDDVEEMTHNILIEKATHVRSEIEKILETSKQGKILREGIATAIIGRPNVGKSSLLNS 239 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L ++ AIVTDI GTTRDV+ +++ G +K+ DTAGIRET+D+VE+ G++R+ + Sbjct: 240 LVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSKEMMSQ 299 Query: 299 ADLILLL----KEINSKKEISFP--KNIDFIFIGTKSDLYSTYTEEY-------DHLISS 345 ADL+L++ + + ++ E F + DFI I K+DL E + +I++ Sbjct: 300 ADLVLVVVNYSEALTNEDEDLFRAVQGKDFIVIVNKTDLPQAIDMERVTELAAGNRVITT 359 Query: 346 --FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCG 401 +G++EL I + + S+ RH+ L+Q + + + E Sbjct: 360 SLIEEQGIDELEKAIADLFFEGTIDSADMTYVSNARHIGLLTQAGKTIGDAVEAIENGVP 419 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+ITG E L+D +FS+FC+GK Sbjct: 420 IDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458 >gi|242823879|ref|XP_002488148.1| mitochondrial GTPase (Mss1), putative [Talaromyces stipitatus ATCC 10500] gi|218713069|gb|EED12494.1| mitochondrial GTPase (Mss1), putative [Talaromyces stipitatus ATCC 10500] Length = 628 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 125/320 (39%), Positives = 184/320 (57%), Gaps = 37/320 (11%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGL-----DGRI 60 TI+A+ST +AI+IIR+SGP+C Q+ +C + + P R A++R + + Sbjct: 83 TIYALSTAPGRAAIAIIRISGPACLQIYRALCPRARDPKQRMATVRALYDPTQAPSPNTL 142 Query: 61 LDKGLLIV-FPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN--------------- 104 LD L++ FPSP + TGED E HVHGG A V +L + K + Sbjct: 143 LDPSALVLYFPSPRTVTGEDVLELHVHGGPATVKAVLNAIEKCNDVIKSEHDNISQSSSF 202 Query: 105 LRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDK 164 +R A PGEF+RRAF N +DL + E+L + +++ETE QRRL++ G + LS+ Y W + Sbjct: 203 IRYAEPGEFTRRAFMNDVLDLPQIEALGETLNAETEQQRRLAVRGANTTLSARYEDWRQQ 262 Query: 165 LTHIRSFIEADLDFSEEEDVQNF--SSKEVLN----DILFLKNDISSHISQGKLGEIIRN 218 L + R +EA +DFSE+ Q+F S +E++ + L+ I HI GE++RN Sbjct: 263 LLYARGELEALIDFSED---QHFDESPQELIGSVSAQVAILRQQIRFHIQNASKGELLRN 319 Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G KI +LG NAGKSSL N + K+ AIV+ GTTRD++ + +DL G+ KI D AG+R Sbjct: 320 GIKIALLGAPNAGKSSLLNRVVGKEAAIVSTEEGTTRDIVDVGIDLGGWYCKIGDMAGLR 379 Query: 279 ETDD------IVEKEGIKRT 292 + + VE EGI+R Sbjct: 380 SSKNEREKIGAVELEGIRRA 399 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 23/46 (50%), Positives = 30/46 (65%), Gaps = 2/46 (4%) Query: 397 EKDCGLDIIAENLRLASVSLGKITG--CVDVEQLLDIIFSKFCIGK 440 E D + AENLR A+ SL +ITG DVE +L ++F KFC+GK Sbjct: 583 ESDVDIVTAAENLRFAAESLAQITGRGGADVEDVLGVVFEKFCVGK 628 >gi|291532561|emb|CBL05674.1| tRNA modification GTPase trmE [Megamonas hypermegale ART12/1] Length = 465 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 148/402 (36%), Positives = 224/402 (55%), Gaps = 22/402 (5%) Query: 58 GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 G ++D+ L I +P S+T E+ E HGG VV ILE LA R+A PGEF++RA Sbjct: 67 GNVIDEALCIAMWAPNSYTKENVVEIQSHGGALVVRRILE-LALQNGARMAEPGEFTKRA 125 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NG++DL +A+S+ D+I + T+ R++ + G+ S + + + +EA +D Sbjct: 126 FLNGRLDLSQAQSVMDIIKARTDASLRMAAGHLQGKFSDEIKAMRHDILEVIAHLEASID 185 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 F E+ D+++ + E + +KN I +S G I+R+G I+G N GKSSL N Sbjct: 186 FPED-DIEDVAKDEASAKVRSIKNRIEEMLSTFNTGRILRDGLVTAIIGKPNVGKSSLLN 244 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 L ++D AIVTDIPGTTRD L ++ G +KI DTAGIRET+D VE+ G++++ V+ Sbjct: 245 TLLREDRAIVTDIPGTTRDSLEEYANIGGVPLKIIDTAGIRETEDKVEQIGVEKSMSYVQ 304 Query: 298 NADLILLLKEINS--KKE----ISFPKNIDFIFIGTKSDLYSTYTEE---------YDHL 342 ADLIL L + +S KE I+ + + I + TK+DL E + ++ Sbjct: 305 KADLILALFDTSSDLTKEDEEIINLLQGKEGIVLLTKNDLSCVLDIEDLQKRLQGNFKYM 364 Query: 343 -ISSFTGEGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN--EK 398 IS+F +G++EL +I + S K+ ++ R L + +YLE LN E Sbjct: 365 QISTFNNDGIKELEQEIVNRVYSGTVKQTEGVFVNNVRQANALKEAQKYLE-DCLNTIEM 423 Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D D I ++R A LG+ITG E ++D IFS+FCIGK Sbjct: 424 DMAEDFIVIDIRSAWEKLGEITGDTVDEDIIDQIFSQFCIGK 465 >gi|229072949|ref|ZP_04206145.1| tRNA modification GTPase mnmE [Bacillus cereus F65185] gi|228710195|gb|EEL62173.1| tRNA modification GTPase mnmE [Bacillus cereus F65185] Length = 458 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 147/459 (32%), Positives = 252/459 (54%), Gaps = 24/459 (5%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----LD-G 58 E +TI A+ST AI+I+R+SG + I K K +S +G LD Sbjct: 2 EFDTIAAISTALGEGAIAIVRVSGDDAVEKVNRIFKGK-DLTEVSSHTIHYGHIVDLDTN 60 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 +++++ ++ + +P +FT E+ E + HGG+ VN +L+ L +RLA PGEF++RAF Sbjct: 61 QVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAF 119 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG+IDL +AE++ DLI ++T+ +++ M G LS L G ++ + +E ++D+ Sbjct: 120 LNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGLLRQEILETLAHVEVNIDY 179 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E +DV+ + ++ ++++I + K G+I+R G I+G N GKSSL N+ Sbjct: 180 PEYDDVEEMTHNILIEKATHVRSEIEKILETSKQGKILREGIATAIIGRPNVGKSSLLNS 239 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L ++ AIVTDI GTTRDV+ +++ G +K+ DTAGIRET+D+VE+ G++R+ + Sbjct: 240 LVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSKEMMSQ 299 Query: 299 ADLILLL----KEINSKKEISFP--KNIDFIFIGTKSDLYSTYTEEY-------DHLISS 345 ADL+L++ + + ++ E F + DFI I K+DL E + +I++ Sbjct: 300 ADLVLVVVNYSEALTNEDEDLFRAVQGKDFIVIVNKTDLPQAIDMERVTELAAGNRVITT 359 Query: 346 --FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCG 401 +G++EL I + + S+ RH+ L+Q + + + E Sbjct: 360 SLIEEQGIDELEKAIADLFFEGTIDSADMTYVSNARHIGLLTQAGKTIGDAVEAIENGVP 419 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+ITG E L+D +FS+FC+GK Sbjct: 420 IDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458 >gi|229550722|ref|ZP_04439447.1| tRNA modification GTPase TrmE [Enterococcus faecalis ATCC 29200] gi|229304155|gb|EEN70151.1| tRNA modification GTPase TrmE [Enterococcus faecalis ATCC 29200] Length = 465 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 149/463 (32%), Positives = 257/463 (55%), Gaps = 30/463 (6%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK-KKPFPRKASLRYFFG-----LD 57 E +TI A+ST AISI+RLSG + + + K + + +G + Sbjct: 7 EFDTIAAISTPPGEGAISIVRLSGEQAVAIANKVYRSGTKDLAKVPTHTIHYGHIVDPQN 66 Query: 58 GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 +++D+ +L V +P++FT ED E + HGGI VVN +L+ L + R+A PGEF++RA Sbjct: 67 DQLIDEVMLSVMRAPKTFTREDVVEINCHGGIVVVNQLLQLLLR-EGARMAEPGEFTKRA 125 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NG++DL +AE++ DLI ++T+ +++ + G LS+L ++ + + +E ++D Sbjct: 126 FLNGRMDLSQAEAVMDLIRAKTDKAMNVALNQLDGNLSALIRSLRQEILNTLAQVEVNID 185 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 + E +DV+ ++K +L F+K I ++ K G+I+R G I+G N GKSSL N Sbjct: 186 YPEYDDVEELTTKLLLEKAEFVKAQIQQLLTTAKQGKILREGLSTAIIGRPNVGKSSLLN 245 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 L +++ AIVTDI GTTRDV+ +++ G +K+ DTAGIRET+DIVE+ G++R+ + Sbjct: 246 HLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDIVERIGVERSRKALA 305 Query: 298 NADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTY-TEEYDHL------ 342 ++DLILL+ +N +E++ K + + + K DL + E L Sbjct: 306 DSDLILLV--LNQSEELTEEDRQLLEATKGLKRVILLNKMDLPTKLDPNELQELVPAEEI 363 Query: 343 --ISSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399 +S + GL++L KI + + + + S+ RH+ L Q L+ +N + Sbjct: 364 LSVSVLSNTGLDQLEAKIADLFFGGQTGEKDATYISNTRHIALLDQAAISLQEV-INGIE 422 Query: 400 CGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G+ D++ ++ LG+I G ++L+ +FS+FC+GK Sbjct: 423 AGMPVDLVQIDMTRCWDYLGEIVGDSVQDELITQLFSQFCLGK 465 >gi|310659884|ref|YP_003937605.1| GTPase [Clostridium sticklandii DSM 519] gi|308826662|emb|CBH22700.1| GTPase [Clostridium sticklandii] Length = 459 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 157/458 (34%), Positives = 251/458 (54%), Gaps = 26/458 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP------RKASLRYFFGLDGR 59 +TI AV+T + I I+RLSGP + I K K RK + + D + Sbjct: 5 DTIAAVATAPGEAGIGIVRLSGPKALDIANKIFKPIKGNTDLSMQVRKLVYGHVYDQD-K 63 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 ++D+ L+ P +FT ED E + HGG V ILE + + RLA+ GEF++RAF Sbjct: 64 VIDEVLISYMKKPHTFTREDVVEINCHGGYISVRKILEAVIR-NGARLADRGEFTKRAFL 122 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NG+IDL +AE++ D+I+++T ++ + + G LS+ Q DKLT + I +DF Sbjct: 123 NGRIDLSQAEAIIDIINAKTNASFDIAQKHLEGNLSASIKQIRDKLTMDLAKITVAIDFP 182 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 EE++ + + +E+ D+ + I I+ + G+I+R+G K VI+G N GKSSL NA+ Sbjct: 183 EEDEPE-VTYEELSVDLREVMTSIKGLIASFETGKILRDGLKTVIVGKPNVGKSSLLNAI 241 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 K+ AIVT+I GTTRD++ +++ G +KI DTAGIRETDD+VEK G++++ E+A Sbjct: 242 LKESRAIVTEIEGTTRDIIEEYVNIGGIPLKIVDTAGIRETDDLVEKIGVQKSKESFESA 301 Query: 300 DLILLL----KEINSKKE--ISFPKNIDFIFIGTKSDLYSTYTEEYDH---------LIS 344 DL++++ + ++++ + +S + I + K+DL S T++ H IS Sbjct: 302 DLVIMMLDSSRHLSNQDQDILSLLGDKKAIILVNKTDLPSMVTDDEIHNYAKGKPIIRIS 361 Query: 345 SFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGL 402 + +G++ L +I++ +L K + ++ RH L + A D L Sbjct: 362 ALEKKGIDLLEKEIENMVLEGSLKTQNDIMVTNARHKMALERAFEACSDALTALADNIPL 421 Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 DI + + A LG ITG E LLD IF +FCIGK Sbjct: 422 DIAETDFKNAWNELGHITGDTVSEDLLDTIFREFCIGK 459 >gi|55822936|ref|YP_141377.1| tRNA modification GTPase TrmE [Streptococcus thermophilus CNRZ1066] gi|116627781|ref|YP_820400.1| tRNA modification GTPase TrmE [Streptococcus thermophilus LMD-9] gi|81559421|sp|Q5LZW3|MNME_STRT1 RecName: Full=tRNA modification GTPase mnmE gi|122267622|sp|Q03KR8|MNME_STRTD RecName: Full=tRNA modification GTPase mnmE gi|55738921|gb|AAV62562.1| thiophene and furan oxidation protein [Streptococcus thermophilus CNRZ1066] gi|116101058|gb|ABJ66204.1| tRNA modification GTPase trmE [Streptococcus thermophilus LMD-9] gi|312278338|gb|ADQ62995.1| tRNA modification GTPase mnmE [Streptococcus thermophilus ND03] Length = 456 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 146/458 (31%), Positives = 255/458 (55%), Gaps = 22/458 (4%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---D 57 + E +TI A+ST AI I+RLSG + + K K S +G + Sbjct: 3 ITKEFDTITAISTPLGEGAIGIVRLSGTDAIAIANKVFKGKN-LETVDSHTINYGHIVEN 61 Query: 58 GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 I+D+ ++ V +P++FT ED E + HGG+AV N IL+ L + R+A PGEF++RA Sbjct: 62 NEIIDEVMVSVMRAPKTFTREDVVEINTHGGVAVTNEILQLLIR-SGARMAEPGEFTKRA 120 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NG+IDL +AE++ DLI ++T+ +++ + G L +L ++ + + +E ++D Sbjct: 121 FLNGRIDLTQAEAVMDLIRAKTDKAMTVAVSQLDGSLKNLINNTRQEILNTLAQVEVNID 180 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 + E +DV+ ++ V + + + ++ K G+I+R G I+G N GKSSL N Sbjct: 181 YPEYDDVEEVTTNLVREKTQEFQALLENLLATAKRGKILREGLSTAIIGRPNVGKSSLLN 240 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 L +++ AIVTDI GTTRDV+ ++++G +K+ DTAGIR+TDD+VEK G++R+ +E Sbjct: 241 NLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRDTDDVVEKIGVERSKKALE 300 Query: 298 NADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDL-YSTYTEEYDH---LISS 345 ADL+LL+ +NS + ++ +N + I + K+DL + TEE IS Sbjct: 301 EADLVLLV--LNSSEPLTDQDRTLLDISQNSNRIILLNKTDLPQAIQTEELPEDLIPISV 358 Query: 346 FTGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGL 402 E ++++ ++I + + + + S+ RH+ + + + LE + E + Sbjct: 359 LKNENIDKIEDRINQLFFDNAGLVEKDATYLSNARHISLIEKALESLEAVNQGLELGMPV 418 Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D++ ++ LG+ITG ++L+ +FS+FC+GK Sbjct: 419 DLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 456 >gi|323479218|gb|ADX78657.1| tRNA modification GTPase TrmE [Enterococcus faecalis 62] Length = 460 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 149/463 (32%), Positives = 257/463 (55%), Gaps = 30/463 (6%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK-KKPFPRKASLRYFFG-----LD 57 E +TI A+ST AISI+RLSG + + + K + + +G + Sbjct: 2 EFDTIAAISTPPGEGAISIVRLSGEQAVAIANKVYRSGTKDLAKVPTHTIHYGHIVDPQN 61 Query: 58 GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 +++D+ +L V +P++FT ED E + HGGI VVN +L+ L + R+A PGEF++RA Sbjct: 62 DQLIDEVMLSVMRAPKTFTREDVVEINCHGGIVVVNQLLQLLLR-EGARMAEPGEFTKRA 120 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NG++DL +AE++ DLI ++T+ +++ + G LS+L ++ + + +E ++D Sbjct: 121 FLNGRMDLSQAEAVMDLIRAKTDKAMNVALNQLDGNLSALIRSLRQEILNTLAQVEVNID 180 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 + E +DV+ ++K +L F+K I ++ K G+I+R G I+G N GKSSL N Sbjct: 181 YPEYDDVEELTTKLLLEKAEFVKAQIQQLLTTAKQGKILREGLSTAIIGRPNVGKSSLLN 240 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 L +++ AIVTDI GTTRDV+ +++ G +K+ DTAGIRET+DIVE+ G++R+ + Sbjct: 241 HLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDIVERIGVERSRKALA 300 Query: 298 NADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTY-TEEYDHL------ 342 ++DLILL+ +N +E++ K + + + K DL + E L Sbjct: 301 DSDLILLV--LNQSEELTEEDRQLLEATKGLKRVILLNKMDLPTKLDPNELQELVPAEEI 358 Query: 343 --ISSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399 +S + GL++L KI + + + + S+ RH+ L Q L+ +N + Sbjct: 359 LSVSVLSNTGLDQLEAKIADLFFGGQTGEKDATYISNTRHIALLDQAALSLQEV-INGIE 417 Query: 400 CGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G+ D++ ++ LG+I G ++L+ +FS+FC+GK Sbjct: 418 AGMPVDLVQIDMTRCWDYLGEIVGDSVQDELITQLFSQFCLGK 460 >gi|330998375|ref|ZP_08322199.1| tRNA modification GTPase TrmE [Paraprevotella xylaniphila YIT 11841] gi|329568481|gb|EGG50286.1| tRNA modification GTPase TrmE [Paraprevotella xylaniphila YIT 11841] Length = 464 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 156/469 (33%), Positives = 247/469 (52%), Gaps = 41/469 (8%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFP---RKASLRYFFGL--- 56 ++TI A++T A AI +IR+SG + + F K P P RKA F + Sbjct: 4 QDTICAIAT-AQGGAIGVIRISGKDAIAITDRIFTPAGKHPLPLSERKAYTMAFGHIRQD 62 Query: 57 DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 DG I+D+ L+ +F SP S+TGED E HG ++ +++ L + R A PGEF++R Sbjct: 63 DGEIIDEVLIGLFKSPHSYTGEDCVEISCHGSSFILQQVMQLLIR-KGCRAAGPGEFTQR 121 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NGK+DL +AE++ADLI+S + R++M M G S ++L H+ S +E +L Sbjct: 122 AFLNGKMDLSQAEAVADLIASSSAATHRMAMNQMRGGFSRELSALRERLLHLTSLMELEL 181 Query: 177 DFSEEEDVQNFSSKEVLNDILF-LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 DFS+ E+++ F+ + L I ++ IS + +G +++NG + I+G +NAGKS+L Sbjct: 182 DFSDHEELE-FADRSELETIAGDIEKVISGLVHSFSVGNVLKNGIPVAIVGETNAGKSTL 240 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N L ++ AIV+DI GTTRDV+ ++L G + DTAGIR+T D +E GI R+F + Sbjct: 241 LNTLLNEEKAIVSDIHGTTRDVIEDTVNLSGITFRFIDTAGIRDTHDTIENMGIARSFHK 300 Query: 296 VENADLILLLKEIN---------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL---- 342 +E A+++L + + S + + N I + KSD S + L Sbjct: 301 MEQAEIVLWVVDNTCAEAQIRQLSPRILPLCSNKQLIILLNKSDQASPIPTKLSGLPENT 360 Query: 343 ----ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398 IS+ G++EL N + + S I ++ RH LS L + ++ Sbjct: 361 VTLSISAKEKTGIQELQNLLVKVASVPELTSSDLIVTNVRHYEALS-----LALEDIHRV 415 Query: 399 DCGL------DIIAENLRLASVSLGKITGC-VDVEQLLDIIFSKFCIGK 440 GL D I+++LR L +I G + +++L IF FCIGK Sbjct: 416 QNGLQTHLSGDFISQDLRGCLFHLAEIVGGEITTDEVLGNIFKNFCIGK 464 >gi|148377321|ref|YP_001256197.1| tRNA modification GTPase TrmE [Mycoplasma agalactiae PG2] gi|205415799|sp|A5IXJ1|MNME_MYCAP RecName: Full=tRNA modification GTPase mnmE gi|148291367|emb|CAL58750.1| TRNA modification GTPase (TrmE) [Mycoplasma agalactiae PG2] Length = 445 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 163/456 (35%), Positives = 247/456 (54%), Gaps = 35/456 (7%) Query: 6 ETIFAVSTGA-LPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYF--FG-----LD 57 +TI A+S+G + AISIIR+SGP V KK F K + FG L+ Sbjct: 4 DTITAISSGGKINQAISIIRVSGPDSVNVV------KKIFTGKVGTSHTITFGNIVDNLN 57 Query: 58 GR-ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 G ++D+ L + F +F GED+ E + HGG+ + N ILE L RLA PGEFSRR Sbjct: 58 GNEVIDEVLCMWFLGTNNFVGEDTVEINCHGGVVITNSILE-LLLANGARLAEPGEFSRR 116 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 +F NGK+DL++AE++ DLI + T Q +L+++ G+ S D+L ++ +E + Sbjct: 117 SFLNGKMDLIKAEAINDLIHASTVSQTKLAIKKFDGKTSMYIQDLKDELAYLIGEMEVSI 176 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D+ E D N + ++++ + ++N IS I + +I G KI ILG N GKSS+ Sbjct: 177 DYPEY-DFDNPFTDKLISRLESIRNKISKTIELSQTSRMIFEGIKIAILGKPNVGKSSIL 235 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 NA+ ++D AIVTDI GTTRD++ +G L K DTAGIR+T + +EK GI ++F ++ Sbjct: 236 NAILEEDKAIVTDIAGTTRDIVEAMWQYKGLLFKFIDTAGIRDTKEKIEKIGIDKSFEQI 295 Query: 297 ENADLILLL-------KEINSK-KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTG 348 E AD++L + E +S+ K + N ++ + K DL T +E+ L S Sbjct: 296 EKADVVLHIYDPSQNDNEFDSQIKNKAHSLNKIYVPVINKKDLLETTNDEF--LYVSAKL 353 Query: 349 EGLEELINKIKSILSNKFKKLPFS---IPSHKRHLYHLSQTVRYLEMASLNEK-DCGLDI 404 L+ L K+ S+ FK + + ++ R L + Q + LE A + K D+ Sbjct: 354 NDLDPLKEKLVSV----FKNVDLNNDQYVNNSRQLALIKQAHKSLEDAIKSIKLGYDPDV 409 Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + +LR A L ITG D E LLD +F FC+GK Sbjct: 410 VIIDLRQAWSHLTDITGRADNELLLDEMFKNFCLGK 445 >gi|332882875|ref|ZP_08450484.1| tRNA modification GTPase TrmE [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332679195|gb|EGJ52183.1| tRNA modification GTPase TrmE [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 464 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 157/469 (33%), Positives = 247/469 (52%), Gaps = 41/469 (8%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFP---RKASLRYFFGL--- 56 ++TI A++T A AI +IR+SG + + F K P P RKA F + Sbjct: 4 QDTICAIAT-AQGGAIGVIRISGKDAIAITDRIFTPVGKHPLPLSERKAYTMAFGHIRQD 62 Query: 57 DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 DG I+D+ L+ +F SP S+TGED E HG ++ +++ L + R A PGEF++R Sbjct: 63 DGEIIDEVLIGLFKSPHSYTGEDCVEISCHGSSFILQQVMQLLIR-KGCRAAGPGEFTQR 121 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NGK+DL +AE++ADLI+S + R++M M G S ++L H+ S +E +L Sbjct: 122 AFLNGKMDLSQAEAVADLIASSSAATHRMAMNQMRGGFSRELSALRERLLHLTSLMELEL 181 Query: 177 DFSEEEDVQNFSSKEVLNDILF-LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 DFS+ E+++ F+ + L I ++ IS + +G +++NG + I+G +NAGKS+L Sbjct: 182 DFSDHEELE-FADRSELETIAGDIEKVISGLVHSFSVGNVLKNGIPVAIVGETNAGKSTL 240 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N L ++ AIV+DI GTTRDV+ ++L G + DTAGIR+T D +E GI R+F + Sbjct: 241 LNTLLNEEKAIVSDIHGTTRDVIEDTVNLSGITFRFIDTAGIRDTHDTIENMGIARSFHK 300 Query: 296 VENADLILLLKEIN---------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL---- 342 +E A+++L + + S + + N I + KSD S + L Sbjct: 301 MEQAEIVLWVVDNTCAEAQIRQLSPRILPLCSNKQLIILLNKSDQVSAVPTKLSGLPENT 360 Query: 343 ----ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398 IS+ G++EL N + S I ++ RH LS L + ++ Sbjct: 361 VTLSISAKEKTGIQELQNLLVKTASVPELTSSDLIVTNVRHYEALS-----LALEDIHRV 415 Query: 399 DCGL------DIIAENLRLASVSLGKITGC-VDVEQLLDIIFSKFCIGK 440 GL D I+++LR L +I G + +++L IF KFCIGK Sbjct: 416 QNGLQTHLSGDFISQDLRECLFHLAEIVGGEITADEVLGNIFMKFCIGK 464 >gi|42784680|ref|NP_981927.1| tRNA modification GTPase TrmE [Bacillus cereus ATCC 10987] gi|81408275|sp|Q72WU3|MNME_BACC1 RecName: Full=tRNA modification GTPase mnmE gi|42740612|gb|AAS44535.1| tRNA modification GTPase TrmE [Bacillus cereus ATCC 10987] Length = 458 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 146/459 (31%), Positives = 252/459 (54%), Gaps = 24/459 (5%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLD---G 58 E +TI A+ST AI+I+R+SG + I K K P ++ Y +D Sbjct: 2 EFDTIAAISTALGEGAIAIVRVSGDDAVEKVNRIFKGKDLTEVPSH-TIHYGHIVDLDTN 60 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 +++++ ++ + +P +FT E+ E + HGG+ VN +L+ L +RLA PGEF++RAF Sbjct: 61 QVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAF 119 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG+IDL +AE++ DLI ++T+ +++ M G LS L G+ + + +E ++D+ Sbjct: 120 LNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGRLRQDILETLAHVEVNIDY 179 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E +DV+ + ++ ++ +I+ + K G+I+R G I+G N GKSSL N+ Sbjct: 180 PEYDDVEEMTHNILIEKATHVRAEIAKILETSKQGKILREGIATAIIGRPNVGKSSLLNS 239 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L ++ AIVTDI GTTRDV+ +++ G +K+ DTAGIRET+D+VE+ G++R+ + Sbjct: 240 LVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSKEMMSQ 299 Query: 299 ADLILLL----KEINSKKEISFP--KNIDFIFIGTKSDLYSTYTEEY-------DHLISS 345 ADL+L++ + + ++ E F + DFI I K+DL E + +I++ Sbjct: 300 ADLVLVVVNYSEALTNEDEDLFRAVQGKDFIVIVNKTDLPQAIDMERVIELAAGNRIITT 359 Query: 346 --FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCG 401 +G++EL I + + S+ RH+ L+Q + + + E Sbjct: 360 SLIEEQGIDELETAIADLFFEGTIDSADVTYVSNARHIGLLTQAGKTIGDAIEAIENGVP 419 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+ITG E L+D +FS+FC+GK Sbjct: 420 IDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458 >gi|229099911|ref|ZP_04230834.1| tRNA modification GTPase mnmE [Bacillus cereus Rock3-29] gi|229118974|ref|ZP_04248319.1| tRNA modification GTPase mnmE [Bacillus cereus Rock1-3] gi|228664499|gb|EEL19995.1| tRNA modification GTPase mnmE [Bacillus cereus Rock1-3] gi|228683526|gb|EEL37481.1| tRNA modification GTPase mnmE [Bacillus cereus Rock3-29] Length = 458 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 146/459 (31%), Positives = 252/459 (54%), Gaps = 24/459 (5%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLD---G 58 E +TI A+ST AI+I+R+SG + I K K P ++ Y +D Sbjct: 2 EFDTIAAISTALGEGAIAIVRVSGDDAVEKVNRIFKGKDLTEVPSH-TIHYGHIVDLDTN 60 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 +++++ ++ + +P +FT E+ E + HGG+ VN +L+ L +RLA PGEF++RAF Sbjct: 61 QVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAF 119 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG+IDL +AE++ DLI ++T+ +++ M G LS L G+ + + +E ++D+ Sbjct: 120 LNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGRLRQDILETLAHVEVNIDY 179 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E +DV+ + ++ ++ +I+ + K G+I+R G I+G N GKSSL N+ Sbjct: 180 PEYDDVEEMTHNILIEKATHVRAEIAKILETSKQGKILREGIATAIIGRPNVGKSSLLNS 239 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L ++ AIVTDI GTTRDV+ +++ G +K+ DTAGIRET+D+VE+ G++R+ + Sbjct: 240 LVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSKEMMSQ 299 Query: 299 ADLILLL----KEINSKKEISFP--KNIDFIFIGTKSDLYSTYTEEY-------DHLISS 345 ADL+L++ + + ++ E F + DFI I K+DL E + +I++ Sbjct: 300 ADLVLIVVNYSEALTNEDEDLFRAVQGKDFIVIVNKTDLPQGIDMERVAELAAGNRVITT 359 Query: 346 --FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCG 401 +G++EL I + + S+ RH+ L+Q + + + E Sbjct: 360 SLIEEQGIDELEQAIAELFFEGTIDSADMTYVSNARHIGLLTQAEKTIGDAIEAIENGVP 419 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+ITG E L+D +FS+FC+GK Sbjct: 420 IDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458 >gi|206970179|ref|ZP_03231132.1| tRNA modification GTPase TrmE [Bacillus cereus AH1134] gi|228955734|ref|ZP_04117729.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229082698|ref|ZP_04215145.1| tRNA modification GTPase mnmE [Bacillus cereus Rock4-2] gi|229193735|ref|ZP_04320676.1| tRNA modification GTPase mnmE [Bacillus cereus ATCC 10876] gi|206734756|gb|EDZ51925.1| tRNA modification GTPase TrmE [Bacillus cereus AH1134] gi|228589760|gb|EEK47638.1| tRNA modification GTPase mnmE [Bacillus cereus ATCC 10876] gi|228700610|gb|EEL53149.1| tRNA modification GTPase mnmE [Bacillus cereus Rock4-2] gi|228803962|gb|EEM50586.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 458 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 146/459 (31%), Positives = 252/459 (54%), Gaps = 24/459 (5%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLD---G 58 E +TI A+ST AI+I+R+SG + I K K P ++ Y +D Sbjct: 2 EFDTIAAISTALGEGAIAIVRVSGDDAVEKVNRIFKGKDLTEVPSH-TIHYGHIVDLDTN 60 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 +++++ ++ + +P +FT E+ E + HGG+ VN +L+ L +RLA PGEF++RAF Sbjct: 61 QVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAF 119 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG+IDL +AE++ DLI ++T+ +++ M G LS L G ++ + +E ++D+ Sbjct: 120 LNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGLLRQEILETLAHVEVNIDY 179 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E +DV+ + ++ ++++I + K G+I+R G I+G N GKSSL N+ Sbjct: 180 PEYDDVEEMTHNILIEKATHVRSEIEKILETSKQGKILREGIATAIIGRPNVGKSSLLNS 239 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L ++ AIVTDI GTTRDV+ +++ G +K+ DTAGIRET+D+VE+ G++R+ + Sbjct: 240 LVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSKEMMSQ 299 Query: 299 ADLILLL----KEINSKKEISFP--KNIDFIFIGTKSDLYSTYTEEY-------DHLISS 345 ADL+L++ + + ++ E F + DFI I K+DL E + +I++ Sbjct: 300 ADLVLVVVNYSEALTNEDEDLFRAVQGKDFIVIVNKTDLPQAIDMERVTELAAGNRVITT 359 Query: 346 --FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCG 401 +G++EL I + + S+ RH+ L+Q + + + E Sbjct: 360 SLIEEQGIDELEKAIADLFFEGTIDSADMTYVSNARHIGLLTQAGKTIGDAVEAIENGVP 419 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+ITG E L+D +FS+FC+GK Sbjct: 420 IDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458 >gi|47568683|ref|ZP_00239380.1| tRNA modification GTPase TrmE [Bacillus cereus G9241] gi|228988713|ref|ZP_04148798.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|47554671|gb|EAL13025.1| tRNA modification GTPase TrmE [Bacillus cereus G9241] gi|228771025|gb|EEM19506.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 458 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 146/459 (31%), Positives = 252/459 (54%), Gaps = 24/459 (5%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLD---G 58 E +TI A+ST AI+I+R+SG + I K K P ++ Y +D Sbjct: 2 EFDTIAAISTALGEGAIAIVRVSGDDAVEKVNRIFKGKDLTEVPSH-TIHYGHIVDLDTN 60 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 +++++ ++ + +P +FT E+ E + HGG+ VN +L+ L +RLA PGEF++RAF Sbjct: 61 QVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAF 119 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG+IDL +AE++ DLI ++T+ +++ M G LS L G+ + + +E ++D+ Sbjct: 120 LNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGRLRQDILETLAHVEVNIDY 179 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E +DV+ + ++ ++ +I+ + K G+I+R G I+G N GKSSL N+ Sbjct: 180 PEYDDVEEMTHNILIEKATHVRAEIAKILETSKQGKILREGIATAIIGRPNVGKSSLLNS 239 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L ++ AIVTDI GTTRDV+ +++ G +K+ DTAGIRET+D+VE+ G++R+ + Sbjct: 240 LVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSKEMMSQ 299 Query: 299 ADLILLL----KEINSKKEISFP--KNIDFIFIGTKSDLYSTYTEEY-------DHLISS 345 ADL+L++ + + ++ E F + DFI I K+DL E + +I++ Sbjct: 300 ADLVLVVVNYSEALTNEDEDLFRAVQGKDFIVIVNKTDLPQAIDMERVIELAEGNRVITT 359 Query: 346 --FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCG 401 +G++EL I + + S+ RH+ L+Q + + + E Sbjct: 360 SLIEEQGIDELETAIADLFFEGTIDSADVTYVSNARHIGLLTQAGKTIGDAIEAIENGVP 419 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+ITG E L+D +FS+FC+GK Sbjct: 420 IDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458 >gi|206975796|ref|ZP_03236707.1| tRNA modification GTPase TrmE [Bacillus cereus H3081.97] gi|217962976|ref|YP_002341554.1| tRNA modification GTPase TrmE [Bacillus cereus AH187] gi|222098961|ref|YP_002533019.1| tRNA modification gtpase trme [Bacillus cereus Q1] gi|229142233|ref|ZP_04270757.1| tRNA modification GTPase mnmE [Bacillus cereus BDRD-ST26] gi|229199692|ref|ZP_04326335.1| tRNA modification GTPase mnmE [Bacillus cereus m1293] gi|206745890|gb|EDZ57286.1| tRNA modification GTPase TrmE [Bacillus cereus H3081.97] gi|217065834|gb|ACJ80084.1| tRNA modification GTPase TrmE [Bacillus cereus AH187] gi|221243020|gb|ACM15730.1| tRNA modification GTPase TrmE [Bacillus cereus Q1] gi|228583787|gb|EEK41962.1| tRNA modification GTPase mnmE [Bacillus cereus m1293] gi|228641251|gb|EEK97558.1| tRNA modification GTPase mnmE [Bacillus cereus BDRD-ST26] Length = 458 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 146/459 (31%), Positives = 252/459 (54%), Gaps = 24/459 (5%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLD---G 58 E +TI A+ST AI+I+R+SG + I K K P ++ Y +D Sbjct: 2 EFDTIAAISTALGEGAIAIVRVSGDDAVEKVNRIFKGKDLTEVPSH-TIHYGHIVDLDTN 60 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 +++++ ++ + +P +FT E+ E + HGG+ VN +L+ L +RLA PGEF++RAF Sbjct: 61 QVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAF 119 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG+IDL +AE++ DLI ++T+ +++ M G LS L G+ + + +E ++D+ Sbjct: 120 LNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGRLRQDILETLAHVEVNIDY 179 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E +DV+ + ++ ++ +I+ + K G+I+R G I+G N GKSSL N+ Sbjct: 180 PEYDDVEEMTHNILIEKATHVRAEIAKILETSKQGKILREGIATAIIGRPNVGKSSLLNS 239 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L ++ AIVTDI GTTRDV+ +++ G +K+ DTAGIRET+D+VE+ G++R+ + Sbjct: 240 LVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSKEMMSQ 299 Query: 299 ADLILLL----KEINSKKEISFP--KNIDFIFIGTKSDLYSTYTEEY-------DHLISS 345 ADL+L++ + + ++ E F + DFI I K+DL E + +I++ Sbjct: 300 ADLVLVVVNYSEALTNEDEDLFRAVQGKDFIVIVNKTDLPQAIDMERVIELAAGNRVITT 359 Query: 346 --FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCG 401 +G++EL I + + S+ RH+ L+Q + + + E Sbjct: 360 SLIEEQGIDELETAIADLFFEGTIDSADVTYVSNARHIGLLTQAGKTIGDAIEAIENGVP 419 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+ITG E L+D +FS+FC+GK Sbjct: 420 IDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458 >gi|323705843|ref|ZP_08117415.1| tRNA modification GTPase TrmE [Thermoanaerobacterium xylanolyticum LX-11] gi|323534839|gb|EGB24618.1| tRNA modification GTPase TrmE [Thermoanaerobacterium xylanolyticum LX-11] Length = 458 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 159/458 (34%), Positives = 249/458 (54%), Gaps = 26/458 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGLDGR-- 59 +TI A+ST ISIIR+SG ++ I K K+ + ++ Y F D + Sbjct: 4 DTIAAISTPIGEGGISIIRISGNDAVKIASSIFKAKRNIDLNSVKSHTVHYGFIYDRKND 63 Query: 60 -ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 I D+ L+ V SP ++T ED E + HGG ILE L RLA PGEF++RAF Sbjct: 64 EIYDEVLVNVMKSPHTYTKEDVVEINCHGGYIPAKRILE-LVLRNGARLAEPGEFTKRAF 122 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG++D+ +AE++ D+I S+T++ + ++ + G + + + L + + I A +DF Sbjct: 123 LNGRLDISQAEAVIDIIRSKTDLSNKYALMQLKGSVKDKITKIKNDLVALIAHIFALMDF 182 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 EE DV+ F+ E+++ I +DI + + G IIR G I+G N GKSSL NA Sbjct: 183 PEE-DVELFNDDELIDGINKSISDIDEILKTSEKGRIIREGLNTAIIGKPNVGKSSLLNA 241 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L ++ AIVTDIPGTTRD++ L ++G + + DTAGIR+TD+IVE+ G++R+ ++ Sbjct: 242 LLNENRAIVTDIPGTTRDIIEEHLSIKGIPINLIDTAGIRQTDEIVERIGVERSREAIDK 301 Query: 299 ADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTY-TEEYDHL-------IS 344 ADLI+ + + + E + +N ++I K DL S +E D L +S Sbjct: 302 ADLIMFIFDSSRPLEKDDYDILKLIENKKVLYILNKIDLPSAIDIDEVDKLSGGKYVKLS 361 Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL-- 402 SFT EGL+ L N + +I+ + ++ RH L + L ++ L + GL Sbjct: 362 SFTKEGLDILENTVYNIVMVDGLSHDEFLLTNMRHKDALIKAKENL-LSCLRTIESGLTE 420 Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D ++ +L A LG ITG E L++ IF +FC+GK Sbjct: 421 DFVSIDLNAAIDHLGLITGETANEDLINEIFERFCVGK 458 >gi|55821017|ref|YP_139459.1| tRNA modification GTPase TrmE [Streptococcus thermophilus LMG 18311] gi|81560616|sp|Q5M4H3|MNME_STRT2 RecName: Full=tRNA modification GTPase mnmE gi|55737002|gb|AAV60644.1| thiophene and furan oxidation protein [Streptococcus thermophilus LMG 18311] Length = 456 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 146/458 (31%), Positives = 255/458 (55%), Gaps = 22/458 (4%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---D 57 + E +TI A+ST AI I+RLSG + + K K S +G + Sbjct: 3 ITKEFDTITAISTPLGEGAIGIVRLSGTDAIAIANKVFKGKN-LETVDSHTINYGHIVEN 61 Query: 58 GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 I+D+ ++ V +P++FT ED E + HGG+AV N IL+ L + R+A PGEF++RA Sbjct: 62 NEIIDEVMVSVMRAPKTFTREDVVEVNTHGGVAVTNEILQLLIR-SGARMAEPGEFTKRA 120 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NG+IDL +AE++ DLI ++T+ +++ + G L +L ++ + + +E ++D Sbjct: 121 FLNGRIDLTQAEAVMDLIRAKTDKAMTVAVSQLDGSLKNLINNTRQEILNTLAQVEVNID 180 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 + E +DV+ ++ V + + + ++ K G+I+R G I+G N GKSSL N Sbjct: 181 YPEYDDVEEVTTNLVREKTQEFQALLENLLATAKRGKILREGLSTAIIGRPNVGKSSLLN 240 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 L +++ AIVTDI GTTRDV+ ++++G +K+ DTAGIR+TDD+VEK G++R+ +E Sbjct: 241 NLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRDTDDVVEKIGVERSKKALE 300 Query: 298 NADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDL-YSTYTEEYDH---LISS 345 ADL+LL+ +NS + ++ +N + I + K+DL + TEE IS Sbjct: 301 EADLVLLV--LNSSEPLTDQDRTLLDISQNSNRIILLNKTDLPQAIQTEELPEDLIPISV 358 Query: 346 FTGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGL 402 E ++++ ++I + + + + S+ RH+ + + + LE + E + Sbjct: 359 LKNENIDKIEDRINQLFFDNAGLVEKDATYLSNARHISLIEKALESLEAVNQGLELGMPV 418 Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D++ ++ LG+ITG ++L+ +FS+FC+GK Sbjct: 419 DLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 456 >gi|327403308|ref|YP_004344146.1| tRNA modification GTPase trmE [Fluviicola taffensis DSM 16823] gi|327318816|gb|AEA43308.1| tRNA modification GTPase trmE [Fluviicola taffensis DSM 16823] Length = 467 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 162/467 (34%), Positives = 243/467 (52%), Gaps = 36/467 (7%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFF----GLDGRIL 61 +TI A+ST AI++IRLSG + + K F S F +DG +L Sbjct: 5 KTICALSTAPGMGAIALIRLSGKDSIDILSRVAGKS--FENTPSHSAHFLRLKKVDGSVL 62 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121 D+ ++ VF SFTGE++ E HG + + I+ L LA PGEF+ RAF NG Sbjct: 63 DEVVVTVFHEGHSFTGENTVEIACHGSLFIQQEIIN-LFLASGCELAKPGEFTMRAFLNG 121 Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181 ++DL +AE+++DLI+SE+ ++M M G S+ +KL H S +E +LDF+EE Sbjct: 122 RMDLSQAEAVSDLIASESARSHEVAMNQMRGSFSNELKDLREKLIHFASLVELELDFAEE 181 Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 DV+ E+L + + + I +LG +++NG + I+G N GKS+L N L Sbjct: 182 -DVEFADRTELLALVTEVLAYVRKLIQSFELGNVLKNGVPVAIVGAPNTGKSTLLNQLLG 240 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKE-GIKRTFLEVENAD 300 +D AIV++I GTTRDV+ L+++G L ++ DTAGIRE + GI+R+ +++ A Sbjct: 241 EDRAIVSNIAGTTRDVIEETLNIDGILFRLIDTAGIREEAAEEIEALGIQRSLDKIKQAK 300 Query: 301 LILLLKEI---NSKKE--ISFPKNID---------------FIFIGTKSDLY-----STY 335 ++L+L + NS+ E +S N F+ IG K DL S + Sbjct: 301 IVLMLSDFSGENSQSEGHLSMDSNTTGQWADEQATIHSGAHFLVIGNKYDLRADQINSPW 360 Query: 336 TEEYDHL-ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS 394 + L IS+ G G+ EL + + F +I S+ RHL L +T LE A Sbjct: 361 EFQTPFLPISAKNGSGIPELKAWLSQQILGSFNTQSDTIVSNARHLDALLKTQDSLEKAK 420 Query: 395 LN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E + D +A ++R A LG ITG + + LL IFSKFCIGK Sbjct: 421 WGLETNITADFVAMDIRQAMFWLGSITGQISEDDLLANIFSKFCIGK 467 >gi|317484428|ref|ZP_07943342.1| tRNA modification GTPase TrmE [Bilophila wadsworthia 3_1_6] gi|316924316|gb|EFV45488.1| tRNA modification GTPase TrmE [Bilophila wadsworthia 3_1_6] Length = 461 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 154/468 (32%), Positives = 241/468 (51%), Gaps = 43/468 (9%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKK---KPFP-RKASLRYFFGLDGR 59 +TI A++T I I+R+SGP + E F K KP+ R+ ++ +G Sbjct: 4 DTIAAIATAPGAGGIGIVRVSGPGALPILEKLFAPAGKGGYKPWILRRGRVQD---TEGN 60 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 LD L + P P++FTGED AEF HGG ++ +LE RLA GEF+RRAF Sbjct: 61 TLDDSLAVFMPGPKTFTGEDVAEFQCHGGPVLLAAVLEACL-CAGARLAERGEFTRRAFL 119 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NG++DL +AE++A++I++ ++ RL+ + G L G +++ H+R+ I +DF Sbjct: 120 NGRMDLTQAEAVAEMIAAPSKEGARLAAAKLDGVLGQRIGDLRERVEHLRAQICLAVDFP 179 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 EEE V+ + L+ I +K ++S ++ + R G + + G NAGKSSL NAL Sbjct: 180 EEE-VECLPQEGFLSAIADVKAAVASLLAGFERTRCWREGVTVALAGPVNAGKSSLMNAL 238 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 + A+VT+ PGTTRD L + L G V++ DTAG+RETD+ E +GI+ +E+A Sbjct: 239 LGRQRAVVTEYPGTTRDFLEEPIQLAGLPVRLVDTAGLRETDNPAEAQGIQLGRSMIESA 298 Query: 300 DLILLLKEINSKKEISFPKNIDF---------IFIGTKSDLYSTYTEEYDH--------- 341 D++LL+ + E + P I + KSDL + Y Sbjct: 299 DVVLLMVD---GTEGTTPDTWALLSELGPERTILVWNKSDLATPPPHWYGKEMNLSVKPA 355 Query: 342 ---LISSFTGEGLEELINKIKSI-LSNKFKKLP---FSIPS--HKRHLYHLSQTVRYLEM 392 +IS+ GEGLE L ++ + L+ + P ++P+ R L + + LE Sbjct: 356 AHAVISARKGEGLETLAEAVRELALARSQGQEPEPGEAVPNLRQARSLMEVLGELEALEQ 415 Query: 393 ASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L D+ A L A+ +L +ITG E++L+ IF+ FCIGK Sbjct: 416 DVL--AGVPYDLCAVRLEGAASALAEITGLDTPEEVLNRIFASFCIGK 461 >gi|315168440|gb|EFU12457.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX1341] Length = 465 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 149/463 (32%), Positives = 257/463 (55%), Gaps = 30/463 (6%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK-KKPFPRKASLRYFFG-----LD 57 E +TI A+ST AISI+RLSG + + + K + + +G + Sbjct: 7 EFDTIAAISTPPGEGAISIVRLSGEQAVAIANKVYRSGTKDLAKVPTHTIHYGHIVDPQN 66 Query: 58 GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 +++D+ +L V +P++FT ED E + HGGI VVN +L+ L + R+A PGEF++RA Sbjct: 67 DQLIDEVMLSVMRAPKTFTREDVVEINCHGGIVVVNQLLQLLLR-EGARMAEPGEFTKRA 125 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NG++DL +AE++ DLI ++T+ +++ + G LS+L ++ + + +E ++D Sbjct: 126 FLNGRMDLSQAEAVMDLIRAKTDKAMNVALNQLDGNLSALIRSLRQEILNTLAQVEVNID 185 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 + E +DV+ ++K +L F+K I ++ K G+I+R G I+G N GKSSL N Sbjct: 186 YPEYDDVEELTTKLLLEKAEFVKAQIQQLLTTAKQGKILREGLSTAIIGPPNVGKSSLLN 245 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 L +++ AIVTDI GTTRDV+ +++ G +K+ DTAGIRET+DIVE+ G++R+ + Sbjct: 246 HLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDIVERIGVERSRKALA 305 Query: 298 NADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTY-TEEYDHL------ 342 ++DLILL+ +N +E++ K + + + K DL + E L Sbjct: 306 DSDLILLV--LNQSEELTEEDRQLLEATKGLKRVILLNKMDLPTKLDPNELQELVPAEEI 363 Query: 343 --ISSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399 +S + GL++L KI + + + + S+ RH+ L Q L+ +N + Sbjct: 364 LSVSVLSNTGLDQLEAKIADLFFGGQTGEKDATYISNTRHIALLDQAALSLQEV-INGIE 422 Query: 400 CGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G+ D++ ++ LG+I G ++L+ +FS+FC+GK Sbjct: 423 AGMPVDLVQIDMTRCWDYLGEIVGDSVQDELITQLFSQFCLGK 465 >gi|50914157|ref|YP_060129.1| tRNA modification GTPase TrmE [Streptococcus pyogenes MGAS10394] gi|73919891|sp|Q5XCB7|MNME_STRP6 RecName: Full=tRNA modification GTPase mnmE gi|50903231|gb|AAT86946.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase [Streptococcus pyogenes MGAS10394] Length = 458 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 145/460 (31%), Positives = 261/460 (56%), Gaps = 24/460 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD- 57 + E +TI A+ST AI I+RLSG + + + K K + AS +G +D Sbjct: 3 ITKEFDTITAISTPLGEGAIGIVRLSGTDALAIAQSVFKGKN-LEQVASHTINYGHIIDP 61 Query: 58 --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 G I+D+ ++ V +P++FT E+ E + HGGIAV N IL+ L + R+A PGEF++ Sbjct: 62 KTGTIIDEVMVSVMLAPKTFTRENVVEINTHGGIAVTNEILQLLIRQ-GARMAEPGEFTK 120 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG++DL +AE++ D+I ++T+ ++++ + G LS L ++ + + +E + Sbjct: 121 RAFLNGRVDLTQAEAVMDIIRAKTDKAMTIAVKQLDGSLSQLINDTRQEILNTLAQVEVN 180 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +D+ E +DV+ ++ + ++ + + + K G+I+R G I+G N GKSSL Sbjct: 181 IDYPEYDDVEEMTTALLREKTQEFQSLLENLLRTAKRGKILREGLSTAIIGRPNVGKSSL 240 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N L ++D AIVTDI GTTRDV+ ++++G +K+ DTAGIRETDD+VE+ G++R+ Sbjct: 241 LNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAGIRETDDLVEQIGVERSKKA 300 Query: 296 VENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEEY---DHL-ISS 345 ++ +DL+LL+ + K ++ ++ + I + K+DL E D++ IS Sbjct: 301 LQESDLVLLVLNASEKLTDQDRALLNLSQDSNRIILLNKTDLEQKIELEQLPDDYIPISV 360 Query: 346 FTGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK---DC 400 T + + + ++I + + + + S+ RH+ + + V+ LE ++N+ Sbjct: 361 LTNQNINLIEDRINQLFFDNAGLVEQDATYLSNARHISLIEKAVQSLE--AVNDGLALGM 418 Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+ITG ++L+ +FS+FC+GK Sbjct: 419 PVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 458 >gi|251800245|ref|YP_003014976.1| tRNA modification GTPase TrmE [Paenibacillus sp. JDR-2] gi|247547871|gb|ACT04890.1| tRNA modification GTPase TrmE [Paenibacillus sp. JDR-2] Length = 459 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 150/458 (32%), Positives = 242/458 (52%), Gaps = 25/458 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG-----LDGRI 60 +TI A+ST I+IIR+SGP + I + + A+ +G +G Sbjct: 4 DTIAAISTAVGEGGIAIIRVSGPDAIEGTARIFRSRTDLRDAATHTVQYGHIIDPKNGEQ 63 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +++ ++ V P SFT ED E + HGG+ V +L+++ +RLA PGEF++RAF N Sbjct: 64 VEEVIVTVMRGPRSFTAEDVVEINAHGGVVAVKKVLDQVLLQDGMRLAEPGEFTKRAFLN 123 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G+IDL++AE++ DLI S+++ ++ + G LS + + + IE ++D+ E Sbjct: 124 GRIDLMQAEAVIDLIRSKSDRAFSVARKQAEGTLSKRIKALRQTVIELLAHIEVNIDYPE 183 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 DV++ +S + +I + G+I+R G I+G N GKSSL N LA Sbjct: 184 H-DVEDLTSAYIREQSGSALEEIGKLLKTANEGKILREGIMTAIVGRPNVGKSSLLNMLA 242 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 +++ AIVTDIPGTTRDV+ + L +++ DTAGIRET+D+VE+ G++R+ +E AD Sbjct: 243 QENKAIVTDIPGTTRDVIEEYVTLNHIPLRLLDTAGIRETNDVVERIGVERSHNALEEAD 302 Query: 301 LILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYT---------EEYDHLISS 345 LIL + N + + K+ I I KSDL S EE +S Sbjct: 303 LILFVLNNNEPIHEDDRALLEKVKDRQLILIINKSDLESKLEMAEIEALIDEERIVRMSV 362 Query: 346 FTGEGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG--L 402 +GL+ L I K + + S+ RH+ L + + L + +++ + G + Sbjct: 363 REEDGLDRLEKAISKLFFEGQLDSGDLTYVSNVRHISLLKRAQQSL-IDAIDASNAGIPI 421 Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D+I ++R A SLG+I G + L+D IFS+FC+GK Sbjct: 422 DLIQIDVRSAWESLGEILGDEVGDSLIDQIFSQFCLGK 459 >gi|306831214|ref|ZP_07464375.1| tRNA modification GTPase TrmE [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304426780|gb|EFM29891.1| tRNA modification GTPase TrmE [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 457 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 154/469 (32%), Positives = 261/469 (55%), Gaps = 42/469 (8%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD- 57 + +E +TI A+ST AI I+RLSG + + + + K + AS +G +D Sbjct: 2 ITNEFDTIAAISTPLGEGAIGIVRLSGTEALAIAQKVYRGKD-LNKVASHTINYGHIVDP 60 Query: 58 --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 +LD+ ++ V +P++FT E+ E + HGG+AV N IL L RLA PGEF++ Sbjct: 61 NTDEVLDEVMVSVMLAPKTFTCENVVEINTHGGVAVTNEILR-LVLRQGARLAEPGEFTK 119 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG++DL +AE++ D+I ++T+ ++++ + G LS L ++ + + +E + Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSQLINDTRQEILNTLAQVEVN 179 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +D+ E +DV+ ++ + + + + + K G+I+R G I+G N GKSSL Sbjct: 180 IDYPEYDDVEEMTTALIREKTQEFQELLENLLRTAKRGKILREGLSTAIIGRPNVGKSSL 239 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N L ++D AIVTDI GTTRDV+ ++++G +K+ DTAGIRETDD+VEK G++R+ Sbjct: 240 LNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLVDTAGIRETDDVVEKIGVERSKKA 299 Query: 296 VENADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTYTEEYDHL----- 342 +E ADL+LL+ +NS + ++ K+ + I + K+DL E D L Sbjct: 300 LEEADLVLLV--LNSSEPLTNQDRALLELSKDSNRIILLNKTDLPEKI--EADQLPDDVI 355 Query: 343 -ISSFTGEG---LEELINKI----KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS 394 IS + +EE IN++ I+ L S+ RH+ + + V+ L+ + Sbjct: 356 RISVLKNQNIDVIEERINQLFFDNAGIVEKDATYL-----SNARHISLIEKAVQSLQ--A 408 Query: 395 LNEK-DCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +NE + G+ D++ +L LG+ITG ++L+ +FS+FC+GK Sbjct: 409 VNEGLELGMPVDLLQIDLTRCWEILGEITGDAAPDELITKLFSQFCLGK 457 >gi|239618515|ref|YP_002941837.1| tRNA modification GTPase TrmE [Kosmotoga olearia TBF 19.5.1] gi|239507346|gb|ACR80833.1| tRNA modification GTPase TrmE [Kosmotoga olearia TBF 19.5.1] Length = 440 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 144/443 (32%), Positives = 244/443 (55%), Gaps = 14/443 (3%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 + I A++T SA+ IIR SG ++ P P + L F ++G ++D+ + Sbjct: 4 DPICAIATSPGISALGIIRCSGEGSWEKLLPFVNVTDPKPWRLYLTPF-TINGEMIDEVM 62 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + + SP+S+TGED E HG ++ IL+EL K+ R A PGEF++RA NGK+DL Sbjct: 63 IAFYKSPKSYTGEDMVELISHGSPLILRIILQELIKV-GFRQALPGEFTKRAVLNGKMDL 121 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 ++AES+ L+S+ ++ + ++ SG LS + + L + + +E +L++ +E + Sbjct: 122 IKAESIETLVSAHSKKALKAALSNYSGRLSQTINRIRETLLELLAKVEVELNYPDEIE-- 179 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S E++ ++ + + I G+ G + NG K VI G +N GKS+L NAL ++D A Sbjct: 180 -GSDDEIIRELEKTLSRVKKLIRHGENGIVAVNGVKTVIAGRTNVGKSTLLNALLRRDRA 238 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTDIPGTTRD + D+ + G ++ DTAGIRE+ D VE+ GI+R+ +++ ADL+L + Sbjct: 239 IVTDIPGTTRDTIEEDISINGIYFRLVDTAGIRESSDKVERIGIERSLKQIKEADLVLFM 298 Query: 306 KE-INSKKEISFPKNI--DF---IFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIK 359 + I + ++ + + +F I IG K D+ + +D IS+ TG G+++L N + Sbjct: 299 VDLIEPENDLELYEKLRKEFRHSILIGNKLDMVEKCPDGFDVCISAKTGRGIDKLENLMV 358 Query: 360 SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL--DIIAENLRLASVSLG 417 + + P + +R L + ++V +E L G+ D++ L+ Sbjct: 359 ERTQDITELYPDEVFVTERQLALVQRSVEMIE-EILEALKSGITPDVVGSYLQQIIFIYD 417 Query: 418 KITGCVDVEQLLDIIFSKFCIGK 440 ++TG E LLD IF FC+GK Sbjct: 418 ELTGRYSAEDLLDKIFGNFCVGK 440 >gi|166032899|ref|ZP_02235728.1| hypothetical protein DORFOR_02620 [Dorea formicigenerans ATCC 27755] gi|166027256|gb|EDR46013.1| hypothetical protein DORFOR_02620 [Dorea formicigenerans ATCC 27755] Length = 470 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 166/479 (34%), Positives = 253/479 (52%), Gaps = 48/479 (10%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKAS--LRYFFGL 56 M +E TI A+ST S I I+R+SG ++ E I K K K ++ + + Y + + Sbjct: 1 MRNESGTIAAISTAMSNSGIGIVRMSGEEAVEIAERIYKGKNEKKLSKQPTHTIHYGYIV 60 Query: 57 DGR-ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 DG +D+ L+++ P S+TGED+ E + HGG+ VV ILE + K R A+PGEF++ Sbjct: 61 DGEDTIDEVLVMLMRGPHSYTGEDTVEINCHGGVYVVRRILETVIKY-GARPADPGEFTK 119 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NGK+DL +AE++ DLISS+ E R S+ + G + + +++ + +FIE Sbjct: 120 RAFLNGKMDLSQAEAVGDLISSKNEYALRSSVSQLKGNIKKEIQKIREEILYHTAFIETA 179 Query: 176 LDFSEEEDVQNFSSK--EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233 LD E V + K V+ D + + +S G +I+ G K VI+G NAGKS Sbjct: 180 LDDPEHISVDGYGEKLEVVVEDHM---KSLKHLLSTCDDGRMIKEGIKTVIVGKPNAGKS 236 Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293 SL N L ++ AIVT+I GTTRDVL ++L+G + I DTAGIR+T+D+VEK G+ R Sbjct: 237 SLLNVLLGEERAIVTEIAGTTRDVLEEHMNLQGISLNIVDTAGIRDTEDVVEKIGVDRAK 296 Query: 294 LEVENADLIL---------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEE 338 ++ADLI+ +++ I +K I D I K ++ Y+ E Sbjct: 297 ENAKDADLIMYVIDASAPLDENDDDIMRMIYGRKAIILLNKADLNTILGKDEIKKKYS-E 355 Query: 339 YDHL-----------ISSFTGEGLEELINKIKSILSNKFKKLPFS---IPSHKRHLYHLS 384 + L IS+ G+G+ EL +K + K+ F+ ++ RH L+ Sbjct: 356 INQLESCDIFPAIIEISAKNGQGISELEQTLKEMFFE--GKISFNDEIYITNVRHKTALN 413 Query: 385 QTVRYLEMASLNEK-DCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 Y + + E D G+ D + +L A LG ITG E L++ IFSKFC+GK Sbjct: 414 NA--YEALKKVKESIDMGMPEDFYSIDLMDAYEELGSITGETIGEDLVNEIFSKFCMGK 470 >gi|52145292|ref|YP_086749.1| tRNA modification GTPase TrmE [Bacillus cereus E33L] gi|196041935|ref|ZP_03109222.1| tRNA modification GTPase TrmE [Bacillus cereus NVH0597-99] gi|225867465|ref|YP_002752843.1| tRNA modification GTPase TrmE [Bacillus cereus 03BB102] gi|229187713|ref|ZP_04314849.1| tRNA modification GTPase mnmE [Bacillus cereus BGSC 6E1] gi|81685202|sp|Q630B8|MNME_BACCZ RecName: Full=tRNA modification GTPase mnmE gi|51978761|gb|AAU20311.1| tRNA modification GTPase [Bacillus cereus E33L] gi|196027190|gb|EDX65810.1| tRNA modification GTPase TrmE [Bacillus cereus NVH0597-99] gi|225785903|gb|ACO26120.1| tRNA modification GTPase TrmE [Bacillus cereus 03BB102] gi|228595781|gb|EEK53465.1| tRNA modification GTPase mnmE [Bacillus cereus BGSC 6E1] Length = 458 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 146/459 (31%), Positives = 252/459 (54%), Gaps = 24/459 (5%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLD---G 58 E +TI A+ST AI+I+R+SG + I K K P ++ Y +D Sbjct: 2 EFDTIAAISTALGEGAIAIVRVSGDDAVEKVNRIFKGKDLTEVPSH-TIHYGHIVDLDTN 60 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 +++++ ++ + +P +FT E+ E + HGG+ VN +L+ L +RLA PGEF++RAF Sbjct: 61 QVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAF 119 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG+IDL +AE++ DLI ++T+ +++ M G LS L G+ + + +E ++D+ Sbjct: 120 LNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGRLRQDILETLAHVEVNIDY 179 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E +DV+ + ++ ++ +I+ + K G+I+R G I+G N GKSSL N+ Sbjct: 180 PEYDDVEEMTHNILIEKATHVRAEIAKILETSKQGKILREGIATAIIGRPNVGKSSLLNS 239 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L ++ AIVTDI GTTRDV+ +++ G +K+ DTAGIRET+D+VE+ G++R+ + Sbjct: 240 LVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSKEMMSQ 299 Query: 299 ADLILLL----KEINSKKEISFP--KNIDFIFIGTKSDLYSTYTEEY-------DHLISS 345 ADL+L++ + + ++ E F + DFI I K+DL E + +I++ Sbjct: 300 ADLVLVVVNYSEALTNEDEELFRAVQGKDFIVIVNKTDLPQAIDMERVIELAAGNRVITT 359 Query: 346 --FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCG 401 +G++EL I + + S+ RH+ L+Q + + + E Sbjct: 360 SLIEEQGIDELEKAIADLFFEGTIDSADVTYVSNARHIGLLTQAGKTIGDAIEAIENGVP 419 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+ITG E L+D +FS+FC+GK Sbjct: 420 IDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458 >gi|24379659|ref|NP_721614.1| tRNA modification GTPase TrmE [Streptococcus mutans UA159] gi|290580346|ref|YP_003484738.1| putative thiophene and furan degradation protein [Streptococcus mutans NN2025] gi|32171828|sp|Q8DTT8|MNME_STRMU RecName: Full=tRNA modification GTPase mnmE gi|24377614|gb|AAN58920.1|AE014960_1 putative thiophene and furan degradation protein [Streptococcus mutans UA159] gi|254997245|dbj|BAH87846.1| putative thiophene and furan degradation protein [Streptococcus mutans NN2025] Length = 455 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 147/464 (31%), Positives = 259/464 (55%), Gaps = 34/464 (7%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK--PFPRKASLRYFFGLDG 58 + +E +TI A++T AI I+R+SG + + I K K P +G Sbjct: 2 ITNEFDTITAIATPLGEGAIGIVRISGSKALAIIKKIFKGKNLDDVPSHTINYGHIVENG 61 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 I+D+ ++ V +P++FT ED E + HGG+AV N IL+ L R+A+PGEF++RAF Sbjct: 62 AIIDEVMVSVMRAPKTFTREDVIEINTHGGVAVTNEILQ-LVLRSGARMADPGEFTKRAF 120 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG++DL +AE++ DLI ++T+ ++++ + G LS+L ++ + + +E ++D+ Sbjct: 121 LNGRVDLAQAEAVMDLIRAKTDKAMAVAVQQLDGSLSNLINNTRQEILNTLAQVEVNIDY 180 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E +DV+ ++ + + +++ + + G+I+R G I+G N GKSSL N Sbjct: 181 PEYDDVEEMTTALMREKTQEFETLLTNLLKTARRGKILREGLSTAIIGRPNVGKSSLLNN 240 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L +++ AIVTDI GTTRDV+ ++++G +K+ DTAGIRETDD+VEK G++R+ +E Sbjct: 241 LLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEKIGVERSKKALEE 300 Query: 299 ADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTYTEEYDHL------IS 344 ADL+LL+ +NS ++++ +N + + + K+DL E D L IS Sbjct: 301 ADLVLLV--LNSAEKLTDQDRTLLEISQNSNRLILLNKTDLPEQI--ETDQLPEDCIKIS 356 Query: 345 SFTGEG---LEELINKI----KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN- 396 + +EE INK+ +I+ L S+ RH+ + + ++ L+ + Sbjct: 357 VIKNQNIDVIEERINKLFFDNAAIVEKDATYL-----SNARHISLIEKALKSLQAVNDGL 411 Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E +D++ ++ LG+ITG ++L+ +FS+FC+GK Sbjct: 412 ELGMPVDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 455 >gi|330443937|ref|YP_004376923.1| tRNA modification GTPase TrmE [Chlamydophila pecorum E58] gi|328807047|gb|AEB41220.1| tRNA modification GTPase TrmE [Chlamydophila pecorum E58] Length = 443 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 155/447 (34%), Positives = 234/447 (52%), Gaps = 20/447 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK-KPFPRKASLRYFFGLDGRILDKG 64 +TI A++T +I+++RLSGP + + K P G I+D+ Sbjct: 5 DTIAAIATPPGEGSIAVVRLSGPQAIAIANKVFSKNIVDLPTHTVHLGTVSSQGVIIDQV 64 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 LLI+ +P SFTGED E HGG ILE L R A PGEFS+RAF NGKID Sbjct: 65 LLIIMRAPRSFTGEDVIEIQCHGGYFSCTQILEALLN-EGARGALPGEFSQRAFLNGKID 123 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L++AE++ +LI+S+ ++ + G S + +D + +FIE DF EEE Sbjct: 124 LIQAEAIQNLIASDNLDAYHIAQGHLQGRFSQKIQEVVDIIFEALAFIEVLADFPEEEQP 183 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + + L + +S + G+ + G I++ G N GKSSL NAL +K+ Sbjct: 184 SLEIPESNIQKALAM---VSEFLDSFDEGQRLAQGTSIILAGEPNVGKSSLLNALTQKNR 240 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIVTDIPGTTRD+L L+G +++ DTAG R+T+D++E+EGI R + +E+A IL Sbjct: 241 AIVTDIPGTTRDILEESWTLQGKRIRLIDTAGQRDTNDLIEQEGINRARMAMESAQGILW 300 Query: 305 L----KEINSKKEISFPKNIDFIFIGTKSDLYSTY---TEEYDHLISSFTGEGLEELINK 357 + + N EI F K+ I+ K DL + T + IS+ TGEG+ EL Sbjct: 301 VMDATRPQNPLPEILFSKSTFLIW--NKIDLAAPKKFNTNLPELAISTKTGEGILELKTA 358 Query: 358 IKSIL----SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLAS 413 ++ L S K K+ H+ L + ++ + L+++ + IA++LR A Sbjct: 359 LQQWLQKESSGKSSKVFLVSSRHQSILQTIQSNLKAAQDKLLSQQPP--EFIAQDLRHAL 416 Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++G ++G E +L IFSKFCIGK Sbjct: 417 YAIGNLSGSEVTEAVLREIFSKFCIGK 443 >gi|319940690|ref|ZP_08015032.1| tRNA modification GTPase mnmE [Sutterella wadsworthensis 3_1_45B] gi|319805841|gb|EFW02608.1| tRNA modification GTPase mnmE [Sutterella wadsworthensis 3_1_45B] Length = 462 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 152/462 (32%), Positives = 242/462 (52%), Gaps = 27/462 (5%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQ--VCEFICKKKKPFPRKASLRYFFGLDGRI 60 ++K I A++T I +IRLS + + + ++ PR+ L F + + Sbjct: 4 NDKTPIIAIATAPGRGGIGVIRLSFEADLADPILAALFPQRSIEPRRVQLLPFLDENNAL 63 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEE-LAKMP--NLRLANPGEFSRRA 117 LD +++ F +P S+TGE E HGG ++ IL L K+ LR+A PGEF++RA Sbjct: 64 LDHAVVLYFSAPASYTGESVLEIQAHGGPVLLKLILRAALTKLAFCGLRIAEPGEFTKRA 123 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NG++DL +AE+++ LI + +E + +SG+ S D L R+ EA LD Sbjct: 124 FLNGRMDLTQAEAVSGLIDAASEAAAHAAARSLSGDFSREVHAAGDLLDEARALSEASLD 183 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 F EE D+++ K++ + + ++ + G ++ +G + ++G N GKSSL N Sbjct: 184 FPEE-DLEDLKEKQIFTRAREAQIKLEGLLANARRGVVLADGITVALVGAPNVGKSSLLN 242 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 ALA +VAIVT+I GTTRD + +G ++I DTAG+RET+DIVE++GI+RT + Sbjct: 243 ALAGDEVAIVTEIAGTTRDRIEHWTAFDGIPLRIVDTAGMRETNDIVEQKGIERTLKAIS 302 Query: 298 NADLILLLKEINSK-----------KEISFPKNIDFIFIGTKSDLYS-----TYTEEYDH 341 AD++L L + + + +E + P + + K D S Y ++ Sbjct: 303 EADIVLHLVDASGRIPDDEALLTRVREYARP-GTPLLIVANKIDSISLERRNEYCDDASI 361 Query: 342 L-ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEK 398 + IS+ T EGLE L ++ + + + +RHL L +L A Sbjct: 362 VPISAKTHEGLEALKARVLEYVDMAGGTEGVFL-ARERHLECLRMASAHLSTALEMSTSP 420 Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 C ++I AE LRLA +LG++ G D E LL IIFS+FCIGK Sbjct: 421 FCMMEIFAEELRLAGRALGELLGETDAEDLLGIIFSRFCIGK 462 >gi|30265502|ref|NP_847879.1| tRNA modification GTPase TrmE [Bacillus anthracis str. Ames] gi|49188321|ref|YP_031574.1| tRNA modification GTPase TrmE [Bacillus anthracis str. Sterne] gi|49480475|ref|YP_039474.1| tRNA modification GTPase TrmE [Bacillus thuringiensis serovar konkukian str. 97-27] gi|50196974|ref|YP_052661.1| tRNA modification GTPase TrmE [Bacillus anthracis str. 'Ames Ancestor'] gi|65317465|ref|ZP_00390424.1| COG0486: Predicted GTPase [Bacillus anthracis str. A2012] gi|165873022|ref|ZP_02217643.1| tRNA modification GTPase TrmE [Bacillus anthracis str. A0488] gi|167635055|ref|ZP_02393372.1| tRNA modification GTPase TrmE [Bacillus anthracis str. A0442] gi|167641744|ref|ZP_02399987.1| tRNA modification GTPase TrmE [Bacillus anthracis str. A0193] gi|170689483|ref|ZP_02880673.1| tRNA modification GTPase TrmE [Bacillus anthracis str. A0465] gi|170707531|ref|ZP_02897984.1| tRNA modification GTPase TrmE [Bacillus anthracis str. A0389] gi|177655270|ref|ZP_02936824.1| tRNA modification GTPase TrmE [Bacillus anthracis str. A0174] gi|190569290|ref|ZP_03022184.1| tRNA modification GTPase TrmE [Bacillus anthracis Tsiankovskii-I] gi|196036118|ref|ZP_03103518.1| tRNA modification GTPase TrmE [Bacillus cereus W] gi|196045402|ref|ZP_03112633.1| tRNA modification GTPase TrmE [Bacillus cereus 03BB108] gi|218906676|ref|YP_002454510.1| tRNA modification GTPase TrmE [Bacillus cereus AH820] gi|227818253|ref|YP_002818262.1| tRNA modification GTPase TrmE [Bacillus anthracis str. CDC 684] gi|228918096|ref|ZP_04081624.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228930490|ref|ZP_04093490.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228936764|ref|ZP_04099555.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228949206|ref|ZP_04111474.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229094595|ref|ZP_04225662.1| tRNA modification GTPase mnmE [Bacillus cereus Rock3-42] gi|229124987|ref|ZP_04254161.1| tRNA modification GTPase mnmE [Bacillus cereus 95/8201] gi|229600776|ref|YP_002869693.1| tRNA modification GTPase TrmE [Bacillus anthracis str. A0248] gi|254687075|ref|ZP_05150933.1| tRNA modification GTPase TrmE [Bacillus anthracis str. CNEVA-9066] gi|254724142|ref|ZP_05185927.1| tRNA modification GTPase TrmE [Bacillus anthracis str. A1055] gi|254735159|ref|ZP_05192869.1| tRNA modification GTPase TrmE [Bacillus anthracis str. Western North America USA6153] gi|254742132|ref|ZP_05199819.1| tRNA modification GTPase TrmE [Bacillus anthracis str. Kruger B] gi|254755958|ref|ZP_05207990.1| tRNA modification GTPase TrmE [Bacillus anthracis str. Vollum] gi|254761362|ref|ZP_05213384.1| tRNA modification GTPase TrmE [Bacillus anthracis str. Australia 94] gi|301056958|ref|YP_003795169.1| tRNA modification GTPase TrmE [Bacillus anthracis CI] gi|46577421|sp|Q81JD9|MNME_BACAN RecName: Full=tRNA modification GTPase mnmE gi|81394076|sp|Q6HAF2|MNME_BACHK RecName: Full=tRNA modification GTPase mnmE gi|30260180|gb|AAP29365.1| tRNA modification GTPase TrmE [Bacillus anthracis str. Ames] gi|49182248|gb|AAT57624.1| tRNA modification GTPase TrmE [Bacillus anthracis str. Sterne] gi|49332031|gb|AAT62677.1| tRNA modification GTPase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|50083036|gb|AAT70169.1| tRNA modification GTPase TrmE [Bacillus anthracis str. 'Ames Ancestor'] gi|164711234|gb|EDR16790.1| tRNA modification GTPase TrmE [Bacillus anthracis str. A0488] gi|167510298|gb|EDR85701.1| tRNA modification GTPase TrmE [Bacillus anthracis str. A0193] gi|167529529|gb|EDR92279.1| tRNA modification GTPase TrmE [Bacillus anthracis str. A0442] gi|170127527|gb|EDS96401.1| tRNA modification GTPase TrmE [Bacillus anthracis str. A0389] gi|170666585|gb|EDT17358.1| tRNA modification GTPase TrmE [Bacillus anthracis str. A0465] gi|172080197|gb|EDT65289.1| tRNA modification GTPase TrmE [Bacillus anthracis str. A0174] gi|190559597|gb|EDV13588.1| tRNA modification GTPase TrmE [Bacillus anthracis Tsiankovskii-I] gi|195991285|gb|EDX55253.1| tRNA modification GTPase TrmE [Bacillus cereus W] gi|196023609|gb|EDX62285.1| tRNA modification GTPase TrmE [Bacillus cereus 03BB108] gi|218538645|gb|ACK91043.1| tRNA modification GTPase TrmE [Bacillus cereus AH820] gi|227004482|gb|ACP14225.1| tRNA modification GTPase TrmE [Bacillus anthracis str. CDC 684] gi|228658488|gb|EEL14154.1| tRNA modification GTPase mnmE [Bacillus cereus 95/8201] gi|228688842|gb|EEL42673.1| tRNA modification GTPase mnmE [Bacillus cereus Rock3-42] gi|228810489|gb|EEM56842.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228822973|gb|EEM68814.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228829209|gb|EEM74846.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228841576|gb|EEM86692.1| tRNA modification GTPase mnmE [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229265184|gb|ACQ46821.1| tRNA modification GTPase TrmE [Bacillus anthracis str. A0248] gi|300379127|gb|ADK08031.1| tRNA modification GTPase TrmE [Bacillus cereus biovar anthracis str. CI] Length = 458 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 146/459 (31%), Positives = 252/459 (54%), Gaps = 24/459 (5%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLD---G 58 E +TI A+ST AI+I+R+SG + I K K P ++ Y +D Sbjct: 2 EFDTIAAISTALGEGAIAIVRVSGDDAVEKVNRIFKGKDLTEVPSH-TIHYGHIVDLDTN 60 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 +++++ ++ + +P +FT E+ E + HGG+ VN +L+ L +RLA PGEF++RAF Sbjct: 61 QVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAF 119 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG+IDL +AE++ DLI ++T+ +++ M G LS L G+ + + +E ++D+ Sbjct: 120 LNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGRLRQDILETLAHVEVNIDY 179 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E +DV+ + ++ ++ +I+ + K G+I+R G I+G N GKSSL N+ Sbjct: 180 PEYDDVEEMTHNILIEKATHVRAEIAKILETSKQGKILREGIATAIIGRPNVGKSSLLNS 239 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L ++ AIVTDI GTTRDV+ +++ G +K+ DTAGIRET+D+VE+ G++R+ + Sbjct: 240 LVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSKEMMSQ 299 Query: 299 ADLILLL----KEINSKKEISFP--KNIDFIFIGTKSDLYSTYTEEY-------DHLISS 345 ADL+L++ + + ++ E F + DFI I K+DL E + +I++ Sbjct: 300 ADLVLVVVNYSETLTNEDEELFRAVQGKDFIVIVNKTDLPQAIDMERVIELAAGNRVITT 359 Query: 346 --FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCG 401 +G++EL I + + S+ RH+ L+Q + + + E Sbjct: 360 SLIEEQGIDELEKAIADLFFEGTIDSADVTYVSNARHIGLLTQAGKTIGDAIEAIENGVP 419 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+ITG E L+D +FS+FC+GK Sbjct: 420 IDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458 >gi|298209078|ref|YP_003717257.1| putative tRNA modification GTPase [Croceibacter atlanticus HTCC2559] gi|83849005|gb|EAP86874.1| putative tRNA modification GTPase [Croceibacter atlanticus HTCC2559] Length = 469 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 160/472 (33%), Positives = 249/472 (52%), Gaps = 44/472 (9%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL---DGRI 60 +TI A++T + AI+IIR+SG ++ F K K S G + +I Sbjct: 5 DTIVALATASGAGAIAIIRVSGKDAIEIVNPLFSAKSGKQLKDVNSHTIHLGDVKDNAKI 64 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+ L+ VF +S+TGE + E HG + I++ L + R ANPGEF+ RAF N Sbjct: 65 IDEALVSVFKGTKSYTGEPTVEISCHGSHYIQQEIIQLLLR-KGCRAANPGEFTLRAFIN 123 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GK+DL +AE++ADLI+S+ E +L+++ M G S+ + ++L + S IE +LDF+E Sbjct: 124 GKMDLSQAEAVADLIASDNEASHQLALQQMRGGFSTEIAKLREELLNFASLIELELDFAE 183 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E DV+ + E N + ++ + I G +I+NG I I+G N GKS+L NAL Sbjct: 184 E-DVEFANRDEFQNLVTRIQTVLKRLIDSFATGNVIKNGIPIAIVGEPNVGKSTLLNALL 242 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIV+DI GTTRD + ++ + G + DTAGIRET D++E GIK+TF ++E + Sbjct: 243 NEERAIVSDIAGTTRDTIEDEISIGGIGFRFIDTAGIRETKDVIEGLGIKKTFEKIEKSQ 302 Query: 301 LILLLKEI-----------NSKKEIS-----FPK--------NIDFIFIGTKSDLYSTYT 336 + + L + N K E+ FP+ ID + +L Sbjct: 303 VTVYLFDASLIKNDAIRIKNLKVEVEKIKNRFPQKPLLVIANKIDALLDSEIQNLIDNLK 362 Query: 337 EEYDHL--ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS 394 HL IS+ TG G+EEL + ++ K +I ++ RH L ++ LE Sbjct: 363 PHTTHLLTISAKTGLGIEELQTTLLDFVNTGALKNNDTIITNSRHYDAL---LKALE--E 417 Query: 395 LNEKDCGL------DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +N+ GL D++A ++R A G+ITG V ++LL IF+ FCIGK Sbjct: 418 INKVQDGLNANLPSDLMAIDIRQALFHFGEITGQVTNDELLGNIFANFCIGK 469 >gi|300118814|ref|ZP_07056534.1| tRNA modification GTPase TrmE [Bacillus cereus SJ1] gi|298723782|gb|EFI64504.1| tRNA modification GTPase TrmE [Bacillus cereus SJ1] Length = 458 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 146/459 (31%), Positives = 252/459 (54%), Gaps = 24/459 (5%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLD---G 58 E +TI A+ST AI+I+R+SG + I K K P ++ Y +D Sbjct: 2 EFDTIAAISTALGEGAIAIVRVSGDDAVEKVNRIFKGKDLTEVPSH-TIHYGHIVDLDTN 60 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 +++++ + + +P +FT E+ E + HGG+ VN +L+ L +RLA PGEF++RAF Sbjct: 61 QVIEEVMASIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAF 119 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG+IDL +AE++ DLI ++T+ +++ M G LS L G+ + + +E ++D+ Sbjct: 120 LNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGRLRQDILETLAHVEVNIDY 179 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E +DV+ + ++ ++ +I+ + K G+I+R G I+G N GKSSL N+ Sbjct: 180 PEYDDVEEMTHNILIEKATHVRAEIAKILETSKQGKILREGIATAIIGRPNVGKSSLLNS 239 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L ++ AIVTDI GTTRDV+ +++ G +K+ DTAGIRET+D+VE+ G++R+ + Sbjct: 240 LVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSKEMMSQ 299 Query: 299 ADLILLL----KEINSKKEISFP--KNIDFIFIGTKSDLYSTYTEEY-------DHLISS 345 ADL+L++ + + ++ E F + DFI I K+DL + E + +I++ Sbjct: 300 ADLVLVVVNYSETLTNEDEELFRAVQGKDFIVIVNKTDLPQSIDMERVIELAAGNRVITT 359 Query: 346 --FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCG 401 +G++EL I + + S+ RH+ L+Q + + + E Sbjct: 360 SLIEEQGIDELEKAIADLFFEGTIDSTDVTYVSNARHIGLLTQAGKTIGDAIEAIENGVP 419 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+ITG E L+D +FS+FC+GK Sbjct: 420 IDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458 >gi|29840683|ref|NP_829789.1| tRNA modification GTPase TrmE [Chlamydophila caviae GPIC] gi|33301705|sp|Q821L2|MNME_CHLCV RecName: Full=tRNA modification GTPase mnmE gi|29835033|gb|AAP05667.1| thiophene and furan oxidation (thdF) [Chlamydophila caviae GPIC] Length = 443 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 166/456 (36%), Positives = 240/456 (52%), Gaps = 34/456 (7%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRI 60 + +TI A++T +I+I+R+SGP Q+ + I P AS G+ R Sbjct: 3 KNDTIAAIATPPGEGSIAIVRISGPEAIQITDKIFSGS--VPSFASHTAHLGIVNHKDRQ 60 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+ LL++ +P SFTGED E HGG + ILE L R A PGEFS+RAF N Sbjct: 61 IDQVLLLIMRAPRSFTGEDVIELQCHGGYFSCSQILEALVS-EGARPALPGEFSQRAFLN 119 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GKIDL++AE++ ++I+++ ++ G S + +FIE DF E Sbjct: 120 GKIDLIQAEAIQNIIAADNLDAFFIAQNHFQGHFSKKIQLISSLIVESLAFIEVLADFPE 179 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE K+ LN+ + + D+ S +G+ + G IV+ GH N GKSSL NAL Sbjct: 180 EEQPDMDVPKQRLNEAMLIIEDLISSFDEGQR---LAQGTSIVLAGHPNVGKSSLLNALT 236 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 K+ AIVTDIPGTTRD+L + L+G +++ D+AG RETD++VE+EGI+R +E ++ Sbjct: 237 NKNRAIVTDIPGTTRDILEENWTLQGKRIRLIDSAGQRETDNLVEQEGIERAISAMEQSE 296 Query: 301 LILLLKEIN----SKKEISFPKNIDFIFIGTKSDLYSTY---TEEYDHLISSFTGEGLEE 353 IL + + S EI F K + + KSDL S T IS+ TGEG+ E Sbjct: 297 GILWVMDATQPPPSLPEILFQK--PSLLLWNKSDLASPPQLDTSLPQLAISAKTGEGIFE 354 Query: 354 LINKIKSILSN----KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL-----DI 404 L I+ + K K+ F + S RH L Q YL L+ K+ L ++ Sbjct: 355 LKQFIQKWMQQQQLGKNAKV-FLVSS--RHHTILQQMRSYL----LSAKEGLLAQLPPEL 407 Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 IA LR A + G ++G E +L IFS+FCIGK Sbjct: 408 IALELRQALQATGNLSGSEVNETILGEIFSRFCIGK 443 >gi|228911324|ref|ZP_04075128.1| tRNA modification GTPase mnmE [Bacillus thuringiensis IBL 200] gi|228848342|gb|EEM93192.1| tRNA modification GTPase mnmE [Bacillus thuringiensis IBL 200] Length = 458 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 146/459 (31%), Positives = 253/459 (55%), Gaps = 24/459 (5%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLD---G 58 E +TI A+ST AI+I+R+SG + + I K K P ++ Y +D Sbjct: 2 EFDTIAAISTALGEGAIAIVRVSGDDAVEKVDRIFKGKDLTEVPSH-TIHYGHIVDLDTN 60 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 +++++ ++ + +P +FT E+ E + HGG+ VN +L+ L +RLA PGEF++RAF Sbjct: 61 QVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAF 119 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG+IDL +AE++ DLI ++T+ +++ M G LS L G ++ + +E ++D+ Sbjct: 120 LNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGLLRQEILETLAHVEVNIDY 179 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E +DV+ + ++ ++++I + K G+I+R G I+G N GKSSL N+ Sbjct: 180 PEYDDVEEMTHNILIEKATHVRSEIEKILETSKQGKILREGIATAIIGRPNVGKSSLLNS 239 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L ++ AIVTDI GTTRDV+ +++ G +K+ DTAGIRET+D+VE+ G++R+ + Sbjct: 240 LVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSKEMMSQ 299 Query: 299 ADLILLL----KEINSKKEISFP--KNIDFIFIGTKSDLYSTYTEEY-------DHLISS 345 ADL+L++ + + ++ E F + DFI I K+DL E + +I++ Sbjct: 300 ADLVLVVVNYSEALTNEDEDLFHAIQGKDFIVIVNKTDLPQAIDMERVTKLAAGNRVITT 359 Query: 346 --FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCG 401 +G++EL I + + S+ RH+ L+Q + + + E Sbjct: 360 SLIEEQGIDELEKAIADLFFEGTIDSADMTYVSNARHIGLLTQAGQTIGDAIEAIENGVP 419 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+ITG E L+D +FS+FC+GK Sbjct: 420 IDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458 >gi|211828027|gb|AAH08924.3| GTPBP3 protein [Homo sapiens] Length = 349 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 130/357 (36%), Positives = 201/357 (56%), Gaps = 17/357 (4%) Query: 93 NGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSG 152 +G+L+ L +P LR A GEF+RRAF NGK++L E E LADLI +ETE QRR ++ + G Sbjct: 1 SGVLQALGSVPGLRPAEAGEFTRRAFANGKLNLTEVEGLADLIHAETEAQRRQALRQLDG 60 Query: 153 ELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKL 212 EL L W + LT + +EA +DF E+++++ ++ ++ L+ + +H+ + Sbjct: 61 ELGHLCRGWAETLTKALAHVEAYIDFGEDDNLEEGVLEQADIEVRALQVALGAHLRDARR 120 Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272 G+ +R+G +V+ G NAGKSSL N L++K V+IV+ PGTTRDVL +DL G+ V +S Sbjct: 121 GQRLRSGAHVVVTGPPNAGKSSLVNLLSRKPVSIVSPEPGTTRDVLETPVDLAGFPVLLS 180 Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENAD-LILLLKEINSKKEISFPKNIDFIFIGTKSDL 331 DTAG+RE VE+EG++R E+ + L ++ + ++ + + + KSDL Sbjct: 181 DTAGLREGVGPVEQEGVRRAR---ESCNFLATVVASVGAQSPSDSSQRLLLVL--NKSDL 235 Query: 332 YSTYTEEYDH------LISSFTGEGLEELINKIKSILSNKFKKLPFSIP--SHKRHLYHL 383 S L+S TGEGL+ L+ ++ L+ P + RH +HL Sbjct: 236 LSPEGPGPGPDLPPHLLLSCLTGEGLDGLLEALRKELAAVCGDPSTDPPLLTRARHQHHL 295 Query: 384 SQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + L KD L + AE LR+A L ++TG E++LDIIF FC+GK Sbjct: 296 QGCLDALGHYK-QSKD--LALAAEALRVARGHLTRLTGGGGTEEILDIIFQDFCVGK 349 >gi|328946229|gb|EGG40373.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis SK1087] Length = 479 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 148/461 (32%), Positives = 263/461 (57%), Gaps = 26/461 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLDGR 59 + E +TI A+ST AI I+RLSG F + + I K K ++ +L Y +D + Sbjct: 24 ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKNLNKVESHTLNYGHIVDPQ 83 Query: 60 ---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 ILD+ +L SP++FT ED E + HGGIAV N IL+ LA R+A PGEF++R Sbjct: 84 NQEILDEVMLGAMHSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARMAEPGEFTKR 142 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NG++DL +AE++ D+I ++T+ +++ + G LS+L ++ + + +E ++ Sbjct: 143 AFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQEILNTLAQVEVNI 202 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D+ E +DV+ +++ + + +S+ ++ + G+I+R G I+G N GKSSL Sbjct: 203 DYPEYDDVEEMTTQLMREKTAEFEALLSNLLNTARRGKILREGISTAIIGRPNVGKSSLL 262 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N L ++D AIVTDI GTTRDV+ ++++G +K+ DTAGIRETDD+VE+ G++R+ + Sbjct: 263 NNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEQIGVERSKKAL 322 Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------IS 344 + ADL+LL+ + ++ + ++ + I + K+DL E D L IS Sbjct: 323 QEADLVLLVLNASEPLTDQDRQLLEISQDSNRIVLLNKTDLEEKI--ELDLLPTDVIKIS 380 Query: 345 SFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCG 401 + ++++ +I + + + + S+ RH+ + + + L+ ++N+ D G Sbjct: 381 VLHNQNIDKIEERINQLFFENAGIVEQDATYLSNARHISLIEKALESLQ--AVNQGLDMG 438 Query: 402 L--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + D++ ++ LG+ITG ++L+ +FS+FC+GK Sbjct: 439 MPVDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 479 >gi|189467536|ref|ZP_03016321.1| hypothetical protein BACINT_03926 [Bacteroides intestinalis DSM 17393] gi|189435800|gb|EDV04785.1| hypothetical protein BACINT_03926 [Bacteroides intestinalis DSM 17393] Length = 466 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 158/467 (33%), Positives = 245/467 (52%), Gaps = 35/467 (7%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYF---FG--LDGR 59 ++TI A++T A AI IR+SG ++ I K A + + FG DG Sbjct: 4 QDTICAIAT-AQGGAIGSIRVSGADAIRITSHIFTPAKSGKALADCKPYTLTFGKIHDGE 62 Query: 60 -ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 I+D+ L+ +F +P S+TGEDS E HG ++ +L+ L K RLA PGE+++RAF Sbjct: 63 EIIDEVLVSLFRAPHSYTGEDSTEITCHGSSYILQQVLQLLIKH-GCRLAGPGEYTQRAF 121 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NGK+DL +AE++ADLI+S + RL+M M G S + ++L H S IE +LDF Sbjct: 122 LNGKMDLSQAEAVADLIASSSAATHRLAMSQMRGGFSKELTELRNQLLHFTSLIELELDF 181 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 S+ E+++ E+ ++ IS + +G I+NG + I+G +NAGKS+L N Sbjct: 182 SDHEELEFADRTELYRLADHIEGVISRLVHSFSVGNAIKNGVPVAIIGETNAGKSTLLNV 241 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L +D AIV+DI GTTRDV+ ++ G + DTAGIRET+D +E GI+RTF ++E Sbjct: 242 LLNEDKAIVSDIHGTTRDVIEDTTNIGGITFRFIDTAGIRETNDTIESLGIERTFQKLEQ 301 Query: 299 ADLILLL-------KEINSKKEISFPK--NIDFIFIGTKSDLYST-YTEEYDHLISSFTG 348 A+++L + ++N P+ I + KSDL T +++E SS Sbjct: 302 AEIVLWMIDATDATSQMNQLSGQILPRLERKHLILVFNKSDLSGTAHSDEVLSAASSIIP 361 Query: 349 EGLEELINKIKSILSNKFKK-------LPF-----SIPSHKRH---LYHLSQTVRYLEMA 393 + I+ K ++ +K LP I ++ RH L H + +R ++ Sbjct: 362 DAECIFISAKKRQNTDVLQKKLIAAANLPTITQNDVIVTNARHYEALTHALEAIRRVQQG 421 Query: 394 SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 N + D +A+++R L I G V + +L IF FCIGK Sbjct: 422 LAN--NLSGDFVAQDIRECIFHLSDIAGEVTNDMVLQNIFQHFCIGK 466 >gi|86141545|ref|ZP_01060091.1| tRNA modification GTPase [Leeuwenhoekiella blandensis MED217] gi|85832104|gb|EAQ50559.1| tRNA modification GTPase [Leeuwenhoekiella blandensis MED217] Length = 471 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 161/474 (33%), Positives = 248/474 (52%), Gaps = 44/474 (9%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFG--LDG-R 59 ++TI A++T AI++IR+SG + F K K + S G +DG R Sbjct: 4 QDTIAALATAPGAGAIAVIRVSGAEALAIVSDLFKAKSGKKLIDQDSHTLHLGNIVDGSR 63 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 ILD+ L+ +F S+TGE + E HG + IL+ L + R A GEF+ RAF Sbjct: 64 ILDEALVSIFKGKRSYTGEPTVEISCHGSSYIQQEILQLLFR-NGCRAAKAGEFTLRAFI 122 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NGK+DL +AE++ADLI+S+ +++M+ M G S+ Q +L + S IE +LDF+ Sbjct: 123 NGKMDLSQAEAVADLIASDNAGAHQIAMQQMRGGFSNEIAQLRQELLNFASLIELELDFA 182 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 EE DV+ + +E N I + + I G +I+NG + I+G N GKS+L NAL Sbjct: 183 EE-DVEFANREEFQNLITKITRVLKRLIDSFATGNVIKNGIPVAIVGEPNVGKSTLLNAL 241 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 ++ AIV+DI GTTRD + ++ + G + DTAGIRET D++E GIK+TF ++ A Sbjct: 242 LNEERAIVSDIAGTTRDTIEDEISIGGIGFRFIDTAGIRETVDVIEGLGIKKTFEKIAQA 301 Query: 300 DLILLLKEINSKK----------EIS-----FPKNIDFIFIGTKSDLYSTYTEEYDH--- 341 ++L L INS+K EI FP + + K D S +E + Sbjct: 302 QVVLYL--INSEKFKDQAELFTVEIQKIRNRFPDK-PLVLVANKIDHLSETEQESINKQL 358 Query: 342 -------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388 LIS+ TG G+E L ++ ++ + ++ ++ RH L + + Sbjct: 359 AALLSEGNKSAVLLISAKTGTGVEALKEQLLQFVNTGALRNNETLVTNSRHYDALLKALE 418 Query: 389 YLEMASLNEKDCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +E + D GL D++A ++R A G+ITG V ++LL IF+ FCIGK Sbjct: 419 EIEKVQMG-IDAGLSGDLLAIDIREALYHFGEITGQVTNDELLGNIFANFCIGK 471 >gi|17507259|ref|NP_493573.1| hypothetical protein F39B2.7 [Caenorhabditis elegans] gi|3876919|emb|CAB07393.1| C. elegans protein F39B2.7, confirmed by transcript evidence [Caenorhabditis elegans] Length = 439 Score = 213 bits (543), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 146/456 (32%), Positives = 237/456 (51%), Gaps = 41/456 (8%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66 TIFA+S+G LPSAI++ R+SG V + ++K P+ + + +I+D+ + Sbjct: 3 TIFALSSGTLPSAIAMFRVSGSQSLPVLRQLSRRKVWKPKTMKYTKLYDSESKIIDEAMA 62 Query: 67 IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126 + P P++FTGED+AEF +HG AV LA + N+R A GEF+RRAF NGK+ + Sbjct: 63 VYLPGPKTFTGEDTAEFFLHGSQAVAVKFASCLAGIQNVREAKRGEFTRRAFHNGKLSIS 122 Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186 E + LI S TE +R + M G + ++ + +L I S + +DF E N Sbjct: 123 EVRGIDRLIKSRTEKERNAAFGQMRGGVRAI--EIRKQLIQILSKLFVIIDFGEH---VN 177 Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246 +E D+ + ++++ I E + G IV+ G N+GKSS+ N LA DVAI Sbjct: 178 LELREAQQDVSEILHELNRMIKAWDGAERAQRGLDIVLYGRPNSGKSSILNQLAHDDVAI 237 Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEVENADLILL- 304 V+ IPGTTRD L + + G +++DTAG+R+ T+D++E EGI+R +++AD+I + Sbjct: 238 VSSIPGTTRDSLETIIQINGVRCRLTDTAGVRQKTNDVIEAEGIRRAQKRIQSADIICVV 297 Query: 305 ----------LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTG------ 348 ++ I + E+ + I KSDL + +Y L S+FT Sbjct: 298 VDPQFTSDDDVESILNDVEVMRNREARVIIAKNKSDL----SLKYPKLPSNFTTVSTNAT 353 Query: 349 --EGLEELINKIKSILSNKFKKLPFSIPSH--KRHLYHLSQTVRYLEMASLNEKDCGLDI 404 G ++L N + I+ + + + + + +R + L V + A I Sbjct: 354 TDTGCKQLQNCLGEIVDDLCPEASYLLDADLLRRCSFELESAVTCNDAA----------I 403 Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + +L +A +G++T + E +LD IFSKFCIGK Sbjct: 404 MCSHLEVALEQIGELTEGIVTESVLDGIFSKFCIGK 439 >gi|325687543|gb|EGD29564.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis SK72] gi|327474426|gb|EGF19832.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis SK408] Length = 457 Score = 213 bits (543), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 146/459 (31%), Positives = 258/459 (56%), Gaps = 22/459 (4%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLDGR 59 + E +TI A+ST AI I+RLSG F + + I K K ++ +L Y +D + Sbjct: 2 ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKNLNKVESHTLNYGHIIDPQ 61 Query: 60 ---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 ILD+ +L SP++FT ED E + HGGIAV N IL+ L R+A PGEF++R Sbjct: 62 NQEILDEVMLGAMRSPKTFTREDIIEINTHGGIAVTNEILQ-LVIREGARMAEPGEFTKR 120 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NG++DL +AE++ D+I ++T+ +++ + G LS+L ++ + + +E ++ Sbjct: 121 AFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQEILNTLAQVEVNI 180 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D+ E +DV+ +++ + + +S+ ++ + G+I+R G I+G N GKSSL Sbjct: 181 DYPEYDDVEEMTTQLMREKTAEFEALLSNLLNTARRGKILREGISTAIIGRPNVGKSSLL 240 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N L ++D AIVTDI GTTRDV+ ++++G +K+ DTAGIRETDD+VE+ G++R+ + Sbjct: 241 NNLLREDKAIVTDIEGTTRDVIEEYVNIKGLPLKLIDTAGIRETDDLVEQIGVERSKKAL 300 Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------IS 344 + ADL+LL+ + ++ + K+ + I + K+DL E D L IS Sbjct: 301 QEADLVLLVLNASEPLTDQDRQLLEISKDSNRIVLLNKTDLEEKI--ELDLLPTDVIKIS 358 Query: 345 SFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCG 401 + ++++ +I + + + + S+ RH+ + + + L+ + E Sbjct: 359 VLHNQNIDKIEERINQLFFENAGIVEQDATYLSNARHISLIEKALESLQAVNQGLEMGMP 418 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ ++ LG+ITG ++L+ +FS+FC+GK Sbjct: 419 VDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 457 >gi|317496611|ref|ZP_07954958.1| tRNA modification GTPase TrmE [Gemella moribillum M424] gi|316913276|gb|EFV34775.1| tRNA modification GTPase TrmE [Gemella moribillum M424] Length = 460 Score = 213 bits (543), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 155/469 (33%), Positives = 257/469 (54%), Gaps = 45/469 (9%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA----SLRYFFGLDGRI- 60 ETI A+ST AI I+RLSG F + + I + K ++ ++ Y +D + Sbjct: 3 ETICAISTALGEGAIGIVRLSGDEAFSIADKIVRLPKGRTVESLPTHTINYANIIDPKTE 62 Query: 61 --LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 +++ +L+ P ++T ED E + HGGI + +L L R+A PGEF++RAF Sbjct: 63 EKIEEIMLVKMVGPRTYTTEDVVEINCHGGIITIQKVLA-LCLEYGARMAEPGEFTKRAF 121 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG+IDL +AE++ D I S+T+ +++ M G LS+L + ++ I + +E ++D+ Sbjct: 122 LNGRIDLTQAEAVIDFIKSKTDEASQIANNQMQGRLSTLIKRLRAEILDILAVVEVNIDY 181 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E +D++ ++K +L +KN + + + K G+II+ G I+G N GKSSL N Sbjct: 182 PEYDDLEIETTKTILEKSTSIKNSLEALLETSKQGKIIKEGINTAIIGRPNVGKSSLLNN 241 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L +++ AIVTDI GTTRDVL ++++G +K+ DTAGIRET+D+VEK G++R+ +E Sbjct: 242 LLQENKAIVTDIAGTTRDVLEEHVNIKGVPIKLIDTAGIRETEDVVEKIGVERSKEALEK 301 Query: 299 ADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTYTEE------YDHLI- 343 ADL+L L +NS +E++ + I I K DL + E Y+H I Sbjct: 302 ADLVLFL--LNSSEELTDDDRELLKLTEGKTTIIILNKLDLETKIDIEEIEKLTYNHPII 359 Query: 344 --SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT--VRYLEMA--SLNE 397 S T +G++EL I+ + F + + +LS T + ++ A SLNE Sbjct: 360 KTSMTTYKGIDELEKNIRDLF--------FKGAARPKDATYLSNTRQINLIQQALVSLNE 411 Query: 398 ----KDCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + GL D++ + A LG++ G ++L++ +FS+FC+GK Sbjct: 412 AIKAAEMGLEVDMVLIDYTNAFNLLGEVIGENSGDELINELFSRFCLGK 460 >gi|90961107|ref|YP_535023.1| tRNA modification GTPase TrmE [Lactobacillus salivarius UCC118] gi|227892406|ref|ZP_04010211.1| tRNA modification GTPase TrmE [Lactobacillus salivarius ATCC 11741] gi|122449446|sp|Q1WVH7|MNME_LACS1 RecName: Full=tRNA modification GTPase mnmE gi|90820301|gb|ABD98940.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase [Lactobacillus salivarius UCC118] gi|227865813|gb|EEJ73234.1| tRNA modification GTPase TrmE [Lactobacillus salivarius ATCC 11741] Length = 464 Score = 213 bits (543), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 155/462 (33%), Positives = 252/462 (54%), Gaps = 30/462 (6%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLDGRI- 60 E +TI A+ST AISI+RLSG ++ + K K + P ++ Y ++ + Sbjct: 8 EFDTIAAISTPPGEGAISIVRLSGEDAVKIANKVFKGKNLEKVPTH-TINYGHIVNPKTN 66 Query: 61 --LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 LD+ ++ V +P +FT ED E + HGGI N IL+ L RLA PGEF++RAF Sbjct: 67 EELDEVMVSVMLAPRTFTREDVIEINCHGGIVPTNQILQLLLS-NGARLAEPGEFTKRAF 125 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 +G+IDL +AES+ DLI ++T+ ++++ + G LS L + + + +E ++D+ Sbjct: 126 LHGRIDLTQAESVMDLIRAKTDRSMKVALNQLDGNLSHLIRNLRQDILDVLAQVEVNIDY 185 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E +DV+ ++K + + +K I ++ K G+++R G I+G N GKSSL N Sbjct: 186 PEYDDVETLTTKMLREKAIEVKKSIQQLLTTAKQGKVLREGLATAIVGRPNVGKSSLLNH 245 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L +D AIVTDI GTTRDV+ +++ G +K+ DTAGIRET+D VE+ G++R+ +E Sbjct: 246 LLHEDKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDKVERIGVERSRKAIEQ 305 Query: 299 ADLILLLKEINSKKE--------ISFPKNIDFIFIGTKSDLYSTYTEE-------YDHLI 343 ADL++L+ +N+ +E I I I K+DL + D LI Sbjct: 306 ADLVMLV--LNASEELTDEDKELIQATSGKKRIVILNKTDLPQKLNMDEVRELVPEDELI 363 Query: 344 SS--FTGEGLEELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMASLNEKDC 400 ++ G+++L KI + + +I ++ RH+ L+Q L+ A L D Sbjct: 364 TTSVLKKTGVDKLEEKIAELFFGGIENSQSTIMVTNARHIALLNQAEDSLD-AVLQGLDS 422 Query: 401 GL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G+ D+ ++ A LG+ITG ++LL +FS+FC+GK Sbjct: 423 GMPVDLCQIDMTNAWDELGEITGDSYQDELLTQLFSQFCLGK 464 >gi|319891293|ref|YP_004148168.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Staphylococcus pseudintermedius HKU10-03] gi|317160989|gb|ADV04532.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Staphylococcus pseudintermedius HKU10-03] Length = 460 Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 151/463 (32%), Positives = 250/463 (53%), Gaps = 35/463 (7%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK---KPFPRKASLRYFFGLDGRILD 62 +TI ++ST AI I+RLSG ++ + + K K K P ++ Y G I+D Sbjct: 5 DTITSISTPMGEGAIGIVRLSGHDAVEIADKLYKGKHLLKDVPTH-TINY-----GHIID 58 Query: 63 --------KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114 + ++ V +P +FT ED E + HGGI +N +LE L R+A PGE++ Sbjct: 59 PETEEVVEEVMVSVLRAPRTFTREDIVEINCHGGILTINRVLE-LTMTYGARMAEPGEYT 117 Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174 +RAF NG+IDL +AE++ D I S+T+ +++M + G LS L + + I + +E Sbjct: 118 KRAFLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKRQRQSILEILAQVEV 177 Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234 ++D+ E +DV++ +++ +L +K +I + G G+I+R G VI+G N GKSS Sbjct: 178 NIDYPEYDDVEDATTEFLLERSQEIKQEIQKLLDTGVQGKIMREGLSTVIVGKPNVGKSS 237 Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294 + N L + + AIVT++ GTTRDVL +++ G +++ DTAGIRET+DIVE+ G++R+ Sbjct: 238 MLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRETEDIVERIGVERSRK 297 Query: 295 EVENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYT-EEYDHLI---- 343 + ADLIL + N +K KN D I I K+DL E + ++ Sbjct: 298 ALSEADLILFVLNYNEPLTEDDRKLYEVIKNEDAIVIINKTDLEQRLDLAEVEAMVGDMP 357 Query: 344 ----SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNE 397 S +G++EL +I+ + + + + S+ RH+ L Q ++ A E Sbjct: 358 IIQTSMLQQQGIDELEIQIRDLFFGGEVQSQDMTYVSNSRHISLLKQAKNAIQDAIDAAE 417 Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+I G E+L+D +FS+FC+GK Sbjct: 418 MGVPMDMVQIDLTRTWEILGEIIGESASEELIDQLFSQFCLGK 460 >gi|56750048|ref|YP_170749.1| tRNA modification GTPase TrmE [Synechococcus elongatus PCC 6301] gi|56685007|dbj|BAD78229.1| thiophen and furan oxidation protein [Synechococcus elongatus PCC 6301] Length = 482 Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 149/462 (32%), Positives = 245/462 (53%), Gaps = 33/462 (7%) Query: 6 ETIFAVSTGALPS--AISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL----- 56 +TI A++T +P ++ I+RLSG + ++ F ++P+ S R +G Sbjct: 27 DTIAAIATAIVPQQGSVGIVRLSGAAATEIARQIFQIAGQQPWE---SHRILYGYIRDPE 83 Query: 57 DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 GR++D+ LL+ +P S+T ED E H HGG+ V L+ L RLA PGEF+ R Sbjct: 84 SGRLVDEALLLPMLAPRSYTREDVVELHCHGGLMPVQQTLQ-LCIRAGARLAEPGEFTLR 142 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NG++DL +AES+ADLIS+++ + ++ + G+L Q D+ I + +EA + Sbjct: 143 AFLNGRLDLSQAESIADLISAQSPQAAQAALGSLQGKLGHPIRQLRDRCLDILAEVEARI 202 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 DF E+D+ + + + D+ + +S GE++R G KI I+G N GKSSL Sbjct: 203 DF--EDDLPPLDLEAIAAQLTAAGADMQAILSTADRGELLRTGLKIAIVGRPNVGKSSLL 260 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 NA ++ D AIVTD+PG TRD++ L + G V++ DTAGIRET D VE+ G++R+ Sbjct: 261 NAWSRCDRAIVTDLPGRTRDLVESQLIVGGIPVQVLDTAGIRETSDQVEQIGVERSRRAA 320 Query: 297 ENADLILLLKEIN---SKKEISFPKNID---FIFIGTKSDLYSTY--------TEEYDHL 342 ++ADL+LL + + S ++ + + + + + K D S +E+ + Sbjct: 321 QSADLVLLTIDASAGWSAEDQTIWEAVSDRPILLVINKRDRLSEAERHAIALPQQEFKAI 380 Query: 343 ISSFTGE--GLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EK 398 + + + G+E+L I ++ + + ++R + L+ L + Sbjct: 381 VWTAAAQQKGIEDLEAAILAAVGTGDLTSANWDWALNQRQVAALTTAQTALRRVEETLQA 440 Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LD +LR A +LG ITG E +LD+IFS+FCIGK Sbjct: 441 QLPLDFWTIDLREAIAALGSITGEGIAESMLDLIFSRFCIGK 482 >gi|260062619|ref|YP_003195699.1| tRNA modification GTPase TrmE [Robiginitalea biformata HTCC2501] gi|88784186|gb|EAR15356.1| tRNA modification GTPase [Robiginitalea biformata HTCC2501] Length = 462 Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 158/465 (33%), Positives = 242/465 (52%), Gaps = 32/465 (6%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVC--EFICKKKKPFPRKASLRYFFGL---DG 58 +++TI A++T A AI+++RLSGP + +F K G Sbjct: 2 DRDTIIALATPAGSGAIAVLRLSGPEAIPLAAEKFRAASGKALEDCPGHTVHLGTIRKGD 61 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 RILD+ L VF SP S+TGED E HG + + IL L R+ANPGEF+ RAF Sbjct: 62 RILDEVLATVFRSPRSYTGEDVVEISCHGSVYIQQEILN-LFLDSGCRMANPGEFTLRAF 120 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NGK+DL +AE++ADLI+SE + +++++ M G SS + ++L H S I +LDF Sbjct: 121 INGKMDLSQAEAVADLIASENKASHQIALQQMRGGYSSEIAKLREELLHFASMITLELDF 180 Query: 179 SEEEDVQNFSSKEVLNDIL-FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 S E DV+ F+ +E +L L + I LG +++ G + I G N GKS+L N Sbjct: 181 SGE-DVE-FADREAFFGLLDRLSALLKGLIDSFALGNVLKKGIPVAIAGAPNVGKSTLLN 238 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 AL +++ AIV++I GTTRD + ++ LEG + DTAGIRET+D VE GI++TF ++E Sbjct: 239 ALLREERAIVSEIAGTTRDAIEDEIVLEGIGFRFIDTAGIRETEDTVEHIGIRKTFEKME 298 Query: 298 NADLILLL---------------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL 342 A +I+ + EI S +E P + + L ++ + Sbjct: 299 AARVIIYMVDGSRAHPDLLASWSAEIQSIRE-RHPDKPVILLVNKTDRLDDKARKQLEEA 357 Query: 343 ------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASL 395 IS+ TGEGLE+L + +++ + + S+ RH L + + + Sbjct: 358 LPEALGISARTGEGLEQLQASLLGLVNRGVLENNDPVVSNSRHYQALVKAQEAIGNVREG 417 Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E D+++ ++ A LG+ITG + + LL IFS FCIGK Sbjct: 418 MEAGIPSDLVSVDINEALHHLGEITGQISTDDLLGNIFSNFCIGK 462 >gi|254423905|ref|ZP_05037623.1| tRNA modification GTPase TrmE [Synechococcus sp. PCC 7335] gi|196191394|gb|EDX86358.1| tRNA modification GTPase TrmE [Synechococcus sp. PCC 7335] Length = 459 Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 145/457 (31%), Positives = 240/457 (52%), Gaps = 22/457 (4%) Query: 3 HEKETIFAVSTGALP--SAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGLDG 58 H+ ETI A++T +P ++ I+RLSG + + F ++P+ L Sbjct: 6 HQAETIVAIATAIVPEQGSVGIVRLSGLDAIAIAKQLFHAPGRQPWESHRILYGHIHSQQ 65 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 I+D+ LL++ SP S+T ED EFH HGGI + + +L RLA PGEF+ RAF Sbjct: 66 TIVDEALLLLMESPRSYTREDVVEFHCHGGI-MAVQQVLQLCLQQGARLAQPGEFTLRAF 124 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG++DL +AES+ADL+ +++ + ++ G+ G+L+ + Q + + + IEA +DF Sbjct: 125 LNGRLDLTQAESVADLVGAQSPQAAQTALMGIRGKLAEVIRQLRSQCLDVLAEIEARVDF 184 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 ++ D+ + +V + + + + ++ + GE++R G K+ I+G N GKSSL NA Sbjct: 185 AD--DLPPINEDDVRSRLQSIHHQLAQVLLTADQGELLRTGLKVAIIGQPNVGKSSLLNA 242 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 +K D AIVT++PGTTRDV+ L + G +++ DTAGI + VEK GI+R+ ++ Sbjct: 243 WSKSDRAIVTNLPGTTRDVVESQLIVGGIPIQVLDTAGIHAATNEVEKIGIERSLTAAQS 302 Query: 299 ADLILLLKEINSKKEISFP------KNIDFIFIGTKSDLY-----STYTEEYDHLI--SS 345 ADL+LL + + K+ I + K DL +T + ++ ++ Sbjct: 303 ADLVLLTIDATVGWTAADQALYEQIKDTPHIIVVNKIDLLADSHPTTLPLPHSPIVHTAA 362 Query: 346 FTGEGLEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQT-VRYLEMASLNEKDCGLD 403 G+ EL I S + I ++R L+Q + ++ LD Sbjct: 363 AVNHGIPELEAAILSAANAGDLTAANTDIAINQRQAAALTQADIAIAQVEQTIANALPLD 422 Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +LR+A +LG++TG E +LD IFS+FCIGK Sbjct: 423 FWTIDLRIAIHALGEVTGEEITESMLDEIFSRFCIGK 459 >gi|229020710|ref|ZP_04177436.1| tRNA modification GTPase mnmE [Bacillus cereus AH1273] gi|229026925|ref|ZP_04183248.1| tRNA modification GTPase mnmE [Bacillus cereus AH1272] gi|228734383|gb|EEL85054.1| tRNA modification GTPase mnmE [Bacillus cereus AH1272] gi|228740586|gb|EEL90858.1| tRNA modification GTPase mnmE [Bacillus cereus AH1273] Length = 458 Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 145/458 (31%), Positives = 252/458 (55%), Gaps = 22/458 (4%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLD---GR 59 E +TI A+ST AI+I+R+SG + + I K K + ++ Y +D + Sbjct: 2 EFDTIAAISTALGEGAIAIVRVSGDDAIEKVDRIFKGKDLTQVDSHTIHYGHIVDLDTNQ 61 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 ++++ ++ + +P +FT E+ E + HGG+ VN +L+ L +RLA PGEF++RAF Sbjct: 62 VIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAFL 120 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NG+IDL +AE++ DLI ++T+ +++ M G LS L G+ + + +E ++D+ Sbjct: 121 NGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGRLRQDILETLAHVEVNIDYP 180 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 E +DV+ + ++ ++ +I+ + K G+I+R G I+G N GKSSL N+L Sbjct: 181 EYDDVEEMTHNILIEKATHVRAEIAKILETSKQGKILREGIATAIIGRPNVGKSSLLNSL 240 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 ++ AIVTDI GTTRDV+ +++ G +K+ DTAGIRET+D+VE+ G++R+ + A Sbjct: 241 VQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSKEMMSQA 300 Query: 300 DLILLL----KEINSKKEISFP--KNIDFIFIGTKSDLYSTYTEEY-------DHLISS- 345 DL+L++ + + ++ E F + DFI I K+DL E + +I++ Sbjct: 301 DLVLVVVNYSEALTNEDEELFRAVQGKDFIIIVNKTDLPQEIDMERVTELAAGNRVITTS 360 Query: 346 -FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGL 402 +G++EL I + + S+ RH+ L+Q + + E + Sbjct: 361 LIEEQGIDELEKAIADLFFEGAIDSADMTYVSNTRHIGLLTQAGTTIGDAIEAIENGVPI 420 Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D++ +L LG+ITG E L+D +FS+FC+GK Sbjct: 421 DMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458 >gi|300214038|gb|ADJ78454.1| tRNA modification GTPase mnmE [Lactobacillus salivarius CECT 5713] Length = 464 Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 155/462 (33%), Positives = 252/462 (54%), Gaps = 30/462 (6%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLDGRI- 60 E +TI A+ST AISI+RLSG ++ + K K + P ++ Y ++ + Sbjct: 8 EFDTIAAISTPPGEGAISIVRLSGEDAVKIANKVFKGKNLEKVPTH-TINYGHIVNPKTN 66 Query: 61 --LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 LD+ ++ V +P +FT ED E + HGGI N IL+ L RLA PGEF++RAF Sbjct: 67 EELDEVMVSVMLAPRTFTREDVIEINCHGGIVPTNQILQLLLS-NGARLAEPGEFTKRAF 125 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 +G+IDL +AES+ DLI ++T+ ++++ + G LS L + + + +E ++D+ Sbjct: 126 LHGRIDLTQAESVMDLIRAKTDRSMKVALNQLDGNLSHLIRNLRQDILDVLAQVEVNIDY 185 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E +DV+ ++K + + +K I ++ K G+++R G I+G N GKSSL N Sbjct: 186 PEYDDVETLTTKMLREKAIEVKKSIQQLLTTAKQGKVLREGLATAIVGRPNVGKSSLLNH 245 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L +D AIVTDI GTTRDV+ +++ G +K+ DTAGIRET+D VE+ G++R+ +E Sbjct: 246 LLHEDKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDKVERIGVERSRKAIEQ 305 Query: 299 ADLILLLKEINSKKE--------ISFPKNIDFIFIGTKSDLYSTYTEE-------YDHLI 343 ADL++L+ +N+ +E I I I K+DL + D LI Sbjct: 306 ADLVMLV--LNASEELTDEDKELIQATSGKKRIVILNKTDLPRKLNMDEVRELVPEDELI 363 Query: 344 SS--FTGEGLEELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMASLNEKDC 400 ++ G+++L KI + + +I ++ RH+ L+Q L+ A L D Sbjct: 364 TTSVLKKTGVDKLEEKIAELFFGGIENSQSTIMVTNARHIALLNQAEDSLD-AVLQGLDS 422 Query: 401 GL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G+ D+ ++ A LG+ITG ++LL +FS+FC+GK Sbjct: 423 GMPVDLCQIDMTNAWDELGEITGDSYQDELLTQLFSQFCLGK 464 >gi|332522452|ref|ZP_08398704.1| tRNA modification GTPase TrmE [Streptococcus porcinus str. Jelinkova 176] gi|332313716|gb|EGJ26701.1| tRNA modification GTPase TrmE [Streptococcus porcinus str. Jelinkova 176] Length = 458 Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 146/462 (31%), Positives = 252/462 (54%), Gaps = 28/462 (6%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55 + E +TI A+ST AI I+RLSG + + K K AS +G Sbjct: 3 ITKEFDTITAISTPLGEGAIGIVRLSGTDALNIANKVFKGKN-LHEVASHTINYGHIINP 61 Query: 56 LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 + ILD+ ++ V +P++FT ED E + HGGIAV N IL+ L K R+A PGEF++ Sbjct: 62 ANQEILDEVMVTVMLAPKTFTREDVIEINTHGGIAVTNEILQLLIKQ-GARMAEPGEFTK 120 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG++DL +AE++ D+I ++T+ ++++ + G LS L ++ + + +E + Sbjct: 121 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSELINNTRQEILNTLAQVEVN 180 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +D+ E +DV+ ++ + + + + + + G+I+R G I+G N GKSSL Sbjct: 181 IDYPEYDDVEEMTTALLREKTQEFQALLENLLRTARRGKILREGLSTAIIGRPNVGKSSL 240 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N L ++D AIVTDI GTTRDV+ ++++G +K+ DTAGIR+TDD+VEK G++R+ Sbjct: 241 LNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLIDTAGIRDTDDLVEKIGVERSKKA 300 Query: 296 VENADLILLLKE------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGE 349 ++ ADL+LL+ + + + + + + + K+DL E D L S F Sbjct: 301 LKEADLVLLVLNASEPLTLQDRTLLELSQESNRLILLNKTDLPERI--ETDQLPSDFI-- 356 Query: 350 GLEELINKIKSILSNKFKKLPF----------SIPSHKRHLYHLSQTVRYLEMASLN-EK 398 + L +K ++ ++ +L F + S+ RH+ + Q ++ L+ + E Sbjct: 357 PISVLHHKNIDMIEDRINQLFFDNAGLVEQDATYLSNARHISLIEQALQSLQAVNDGLEM 416 Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+ITG ++L+ +FS+FC+GK Sbjct: 417 GMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 458 >gi|257417403|ref|ZP_05594397.1| tRNA modification GTPase [Enterococcus faecalis AR01/DG] gi|257159231|gb|EEU89191.1| tRNA modification GTPase [Enterococcus faecalis ARO1/DG] Length = 465 Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 148/461 (32%), Positives = 255/461 (55%), Gaps = 26/461 (5%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK-KKPFPRKASLRYFFG-----LD 57 E +TI A+ST AISI+RLSG + + + K + + +G + Sbjct: 7 EFDTIAAISTPPGEGAISIVRLSGEQAVAIANKVYRSGTKDLAKVPTHTIHYGHIVDPQN 66 Query: 58 GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 +++D+ +L V +P++FT ED E + HGGI VVN +L+ L + R+A PGEF++RA Sbjct: 67 DQLIDEVMLSVMRAPKTFTREDVVEINCHGGIVVVNQLLQLLLR-EGARMAEPGEFTKRA 125 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NG++DL +AE++ DLI ++T+ +++ + G LS+L ++ + + +E ++D Sbjct: 126 FLNGRMDLSQAEAVMDLIRAKTDKAMNVALNQLDGNLSALIRSLRQEILNTLAQVEVNID 185 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 + E +DV+ ++K +L F+K I ++ K G+I+R G I+G N GKSSL N Sbjct: 186 YPEYDDVEELTTKLLLEKAEFVKAQIQQLLTTAKQGKILREGLSTAIIGRPNVGKSSLLN 245 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 L +++ AIVTDI GTTRDV+ +++ G +K+ DTAGIRET+DIVE+ G++R+ + Sbjct: 246 HLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDIVERIGVERSRKALA 305 Query: 298 NADLILLLKEINSK------KEISFPKNIDFIFIGTKSDLYSTY-TEEYDHL-------- 342 ++DLILL+ + K + + K + + + K DL + E L Sbjct: 306 DSDLILLVLNQSEKLTEEDRQLLEATKGLKRVILLNKMDLPTKLDPNELQELVPAEEILS 365 Query: 343 ISSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401 +S + GL++L KI + + + + S+ RH+ L Q L+ +N + G Sbjct: 366 VSVLSNTGLDQLEAKIADLFFGGQTGEKDATYISNTRHIALLDQAALSLQEV-INGIEAG 424 Query: 402 L--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + D++ ++ LG+I G ++L+ +FS+FC+GK Sbjct: 425 MPVDLVQIDMTRCWDYLGEIVGDSVQDELITQLFSQFCLGK 465 >gi|85057945|ref|YP_456861.1| tRNA modification GTPase TrmE [Aster yellows witches'-broom phytoplasma AYWB] gi|123518017|sp|Q2NIG1|MNME_AYWBP RecName: Full=tRNA modification GTPase mnmE gi|84790050|gb|ABC65782.1| tRNA modification GTPase [Aster yellows witches'-broom phytoplasma AYWB] Length = 460 Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 157/460 (34%), Positives = 246/460 (53%), Gaps = 28/460 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGL--DGRILD 62 +TI A+ST +S+IR+SG + I K K K ++ + F L D ILD Sbjct: 4 DTIAAISTPLGTGGVSVIRVSGNNSITEINKIFKGKNLIKAKTHTITHGFILNKDQTILD 63 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 + L+ VF +P SFTGE+ E + HGGI + +LE + + ++RLA PGEFS+RA+ NGK Sbjct: 64 EVLISVFKTPNSFTGENVVEINAHGGILITQMVLERILSL-DIRLAFPGEFSQRAYLNGK 122 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 +DL++AES+ DLI + E +++ G+ S L D++ ++ + IE ++D+ E + Sbjct: 123 MDLIQAESIMDLIHATNENAIKIANSGLQKYTSQLVTSLRDQILNLIAQIEVNIDYPEYD 182 Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 D+ + +++ ++ L + + +S ++ G K +I+G N GKSSL NA + Sbjct: 183 DIPQITQQKIALEVQSLIKQLENILSHSHKNRYLKEGIKTLIIGRPNVGKSSLLNAFLNE 242 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 + AIV+DI GTTRD + + G+ + + DTAGIR+TDD +EK GI RT + A+LI Sbjct: 243 NKAIVSDISGTTRDFVEAYFNCRGFTLHLIDTAGIRKTDDPIEKIGILRTEKMLLQAELI 302 Query: 303 LL-LKEINSKKE-----ISFPKNIDFIFIGTKSDL-----------YSTYTEEYDHL-IS 344 LL L + N +E + +N I IG K DL YS+ + + +S Sbjct: 303 LLVLDQSNYLQEEDIQLLQLTQNYPRIIIGNKVDLKSDKLISSLCDYSSQLTPQEIISVS 362 Query: 345 SFTGEGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRY---LEMASLNEKDC 400 S G EL I K N K F+ S+ RH+ + +R L+ A L + Sbjct: 363 SLDKTGFFELQQTILKKFQLNDIKPKDFNYFSNARHINQIQIALRSFQDLQQALL--QSM 420 Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +DI + +L A +LG+I G L+ +FSKFC+GK Sbjct: 421 PIDIYSIDLTKAYQALGQIIGENQENSLIKELFSKFCLGK 460 >gi|262282851|ref|ZP_06060618.1| tRNA modification GTPase mnmE [Streptococcus sp. 2_1_36FAA] gi|262261103|gb|EEY79802.1| tRNA modification GTPase mnmE [Streptococcus sp. 2_1_36FAA] Length = 457 Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 145/459 (31%), Positives = 258/459 (56%), Gaps = 22/459 (4%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLDGR 59 + E +TI A+ST AI I+RLSG F + + I K K ++ +L Y +D + Sbjct: 2 ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKDLSKVESHTLNYGHIVDPQ 61 Query: 60 ---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 ILD+ ++ SP++FT ED E + HGGIAV N IL+ L R+A PGEF++R Sbjct: 62 NQEILDEVMVGAMRSPKTFTREDIIEINTHGGIAVTNEILQ-LVIREGARMAEPGEFTKR 120 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NG++DL +AE++ D+I ++T+ +++ + G LS+L ++ + + +E ++ Sbjct: 121 AFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQEILNTLAQVEVNI 180 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D+ E +DV+ +++ + + +S+ ++ + G+I+R G I+G N GKSSL Sbjct: 181 DYPEYDDVEEMTTQLMREKTAEFEALLSNLLNTARRGKILREGISTAIIGRPNVGKSSLL 240 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N L ++D AIVTDI GTTRDV+ ++++G +K+ DTAGIRETDD+VE+ G++R+ + Sbjct: 241 NNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEQIGVERSKKAL 300 Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------IS 344 + ADL+LL+ + K+ + ++ + I + K+DL E D L IS Sbjct: 301 QEADLVLLVLNASEPLTDQDKQLLEISQDSNRIVLLNKTDLEEKI--ELDQLPADAIKIS 358 Query: 345 SFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCG 401 + ++++ +I + + + + S+ RH+ + + + L+ + E Sbjct: 359 VLHNQNIDKIEERINQLFFENAGIVEQDATYLSNARHISLIEKALESLQAVNQGLEMGMP 418 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ ++ LG+ITG ++L+ +FS+FC+GK Sbjct: 419 VDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 457 >gi|193213594|ref|YP_001999547.1| tRNA modification GTPase TrmE [Chlorobaculum parvum NCIB 8327] gi|193087071|gb|ACF12347.1| tRNA modification GTPase TrmE [Chlorobaculum parvum NCIB 8327] Length = 473 Score = 213 bits (542), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 155/462 (33%), Positives = 246/462 (53%), Gaps = 32/462 (6%) Query: 8 IFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI------L 61 I A++T A++I+R+SG + + + +K + A + GR+ + Sbjct: 15 IAAIATPVGVGALAIVRISGAGVLDLADRVFRKAHGSEKLADAAGYTAHFGRLYDGEEMV 74 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121 D+ + +VF +P SFT E+ EF HGG VV +L L RLA PGEF+RRAF NG Sbjct: 75 DEVIALVFRAPRSFTAEEMVEFTCHGGPVVVGRVLR-LMLDKGCRLAEPGEFTRRAFLNG 133 Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181 +IDLL+AE++ ++I + TE R ++ M G+LS+ G ++L R+ IE +LDFSEE Sbjct: 134 RIDLLQAEAIGEMIHARTESAYRTAISQMKGDLSAQLGALREQLIRSRALIELELDFSEE 193 Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 DV+ S E+ + L+ +++ I + G ++ G VI G NAGKS+L N L Sbjct: 194 -DVEFQSRDELTAQVETLRIEVNRLIDSYQHGRLVSEGVATVIAGKPNAGKSTLLNTLLG 252 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 ++ AIV+ +PGTTRD + + + +++DTAG+RE + +E EGI+R+ +++ ADL Sbjct: 253 QERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADL 312 Query: 302 ILLLKEINSKK------EISFPKNI----DFIFIGTK-------SDLYSTYTEEYDHL-- 342 IL L ++ +++ EI K + F+ + K DL T+ Sbjct: 313 ILYLLDLGTERLDDELTEIRELKAVHPEAKFLTVANKLDRADNSGDLIRAITDGTGTEVI 372 Query: 343 -ISSFTGEGLEELINKIKSILSNKFKKLPFS--IPSHKRHLYHLSQTVRYLEMA-SLNEK 398 IS+ G+G+ +L + L+ KL + + + RH L L+ A L E Sbjct: 373 GISALNGDGIAKLKQHMGE-LTKGLDKLHEASVLVTSLRHYEALRNASDALQNALELIEH 431 Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++IA LR A +G+ITG V E++L+ IF KFCIGK Sbjct: 432 QSETELIAFELRAALDYVGEITGKVVNEEVLNTIFDKFCIGK 473 >gi|306821555|ref|ZP_07455153.1| tRNA modification GTPase TrmE [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550300|gb|EFM38293.1| tRNA modification GTPase TrmE [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 457 Score = 213 bits (542), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 160/458 (34%), Positives = 250/458 (54%), Gaps = 22/458 (4%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LDG-R 59 ++ ETI A +T S+++IIRLSG V E I KK + R +G LDG + Sbjct: 2 YDNETIVAPATSTGRSSVNIIRLSGDKSLAVAESIFMPKKYKISENPRRMIYGHILDGDK 61 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 I+D+ ++ +P SFT ED E + HGG + I+ L +RLA GEF++RAF Sbjct: 62 IIDEVMVCYMRAPHSFTCEDVVEINCHGGSKSLEEIMS-LILTKGVRLAQNGEFTKRAFL 120 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NG+IDL +AE++ D+I++++ + + G LS + ++L + I +DF Sbjct: 121 NGRIDLSQAEAVIDVINAKSTKSFENAQRQLQGRLSGRIEKIDERLKKSIAQITVAIDFP 180 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 EE D+ + +E+++++ +++++ K G++I +G I I+G N GKSSL N L Sbjct: 181 EE-DIPEVTYEELISNVDISIDELNTLKDTYKNGKVISDGISIAIIGRPNVGKSSLLNEL 239 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 +++ AIVTDI GTTRD++T L + G V + DTAGIRET D+VEK G++R+ +ENA Sbjct: 240 LEENRAIVTDIAGTTRDIITESLSINGISVNLIDTAGIRETQDVVEKIGVERSMSSIENA 299 Query: 300 DLILLLKEINSK-----KEISFP-KNIDFIFIGTKSDLYSTY---------TEEYDHLIS 344 D+ILL+ + + K KE+ ++ ++ + KSDL S E IS Sbjct: 300 DIILLVLDTSDKLNAEDKELMEKLRDRHYLILLNKSDLQSNLDINDLPDFIDRENIINIS 359 Query: 345 SFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGL 402 + G+EEL I + +S + + ++ RH + + L+ A + D L Sbjct: 360 TLDKRGIEELKENIYTKAVSFDDDSINNIMITNSRHYALIENAINSLKDARQSLLDNVEL 419 Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 DI+ + A LG+ITG E LLD IFSKFCIGK Sbjct: 420 DILEIDFLNAVDYLGQITGLSVSESLLDTIFSKFCIGK 457 >gi|241889088|ref|ZP_04776392.1| tRNA modification GTPase TrmE [Gemella haemolysans ATCC 10379] gi|241864337|gb|EER68715.1| tRNA modification GTPase TrmE [Gemella haemolysans ATCC 10379] Length = 460 Score = 213 bits (542), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 155/472 (32%), Positives = 255/472 (54%), Gaps = 51/472 (10%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK--KKKPFPRKASLRYFFG-----LDG 58 ETI A+ST AI I+RLSG F + E I + K K AS +G Sbjct: 3 ETICAISTALGEGAIGIVRLSGDEAFSIAEKIVRLPKGKTVESLASHTINYGNVVDPATN 62 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 +++ +L+ P ++T ED E + HGGI + +L L R+A PGEF++RAF Sbjct: 63 EKIEEIMLVKMVGPRTYTTEDVIEINCHGGIITIQKVLA-LCLEHGARMAEPGEFTKRAF 121 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG+IDL +AE++ D I S+T+ +++ M G LS+L + ++ I + +E ++D+ Sbjct: 122 LNGRIDLTQAEAVIDFIKSKTDEASQIANNQMQGRLSTLIKRLRAEILDILTVVEVNIDY 181 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E +D++ ++K +L ++N + S + K G+II+ G I+G N GKSSL N Sbjct: 182 PEYDDLEIETTKTILEKSTSIRNSLESLLETSKQGKIIKEGINTAIIGRPNVGKSSLLNN 241 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L +++ AIVTDI GTTRDVL ++++G +K+ DTAGIRETDDIVE+ G+KR+ +E Sbjct: 242 LLQENKAIVTDIAGTTRDVLEEYVNIKGVPIKLIDTAGIRETDDIVEQIGVKRSKEALEK 301 Query: 299 ADLILLLKEINSKKEISFPKN--------------IDFIFIGTKSDLYSTYTEEYDHLI- 343 ADL+L L +NS +E++ ++ + + TK D+ Y+H I Sbjct: 302 ADLVLFL--LNSSEELTEDDKELLKLTEGKTTIVILNKLDLETKIDIAEVEKLAYNHPII 359 Query: 344 --SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT--VRYLEMA--SLNE 397 S T +G++EL I+ + F + + +LS T + ++ A SLN+ Sbjct: 360 KTSMTTYKGIDELEKNIRDLF--------FGGAARPKDATYLSNTRQINLIQRALTSLND 411 Query: 398 ----KDCGLDIIAENLRLASVS-----LGKITGCVDVEQLLDIIFSKFCIGK 440 + GL++ ++ L + LG++ G ++L++ +FS+FC+GK Sbjct: 412 AIGAAEMGLEV---DMVLIDYTNTFNLLGEVIGENSGDELINELFSRFCLGK 460 >gi|205829221|sp|Q5N638|MNME_SYNP6 RecName: Full=tRNA modification GTPase mnmE Length = 462 Score = 213 bits (542), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 149/462 (32%), Positives = 245/462 (53%), Gaps = 33/462 (7%) Query: 6 ETIFAVSTGALPS--AISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL----- 56 +TI A++T +P ++ I+RLSG + ++ F ++P+ S R +G Sbjct: 7 DTIAAIATAIVPQQGSVGIVRLSGAAATEIARQIFQIAGQQPWE---SHRILYGYIRDPE 63 Query: 57 DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 GR++D+ LL+ +P S+T ED E H HGG+ V L+ L RLA PGEF+ R Sbjct: 64 SGRLVDEALLLPMLAPRSYTREDVVELHCHGGLMPVQQTLQ-LCIRAGARLAEPGEFTLR 122 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NG++DL +AES+ADLIS+++ + ++ + G+L Q D+ I + +EA + Sbjct: 123 AFLNGRLDLSQAESIADLISAQSPQAAQAALGSLQGKLGHPIRQLRDRCLDILAEVEARI 182 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 DF E+D+ + + + D+ + +S GE++R G KI I+G N GKSSL Sbjct: 183 DF--EDDLPPLDLEAIAAQLTAAGADMQAILSTADRGELLRTGLKIAIVGRPNVGKSSLL 240 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 NA ++ D AIVTD+PG TRD++ L + G V++ DTAGIRET D VE+ G++R+ Sbjct: 241 NAWSRCDRAIVTDLPGRTRDLVESQLIVGGIPVQVLDTAGIRETSDQVEQIGVERSRRAA 300 Query: 297 ENADLILLLKEIN---SKKEISFPKNID---FIFIGTKSDLYSTY--------TEEYDHL 342 ++ADL+LL + + S ++ + + + + + K D S +E+ + Sbjct: 301 QSADLVLLTIDASAGWSAEDQTIWEAVSDRPILLVINKRDRLSEAERHAIALPQQEFKAI 360 Query: 343 ISSFTGE--GLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EK 398 + + + G+E+L I ++ + + ++R + L+ L + Sbjct: 361 VWTAAAQQKGIEDLEAAILAAVGTGDLTSANWDWALNQRQVAALTTAQTALRRVEETLQA 420 Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LD +LR A +LG ITG E +LD+IFS+FCIGK Sbjct: 421 QLPLDFWTIDLREAIAALGSITGEGIAESMLDLIFSRFCIGK 462 >gi|298243558|ref|ZP_06967365.1| tRNA modification GTPase TrmE [Ktedonobacter racemifer DSM 44963] gi|297556612|gb|EFH90476.1| tRNA modification GTPase TrmE [Ktedonobacter racemifer DSM 44963] Length = 474 Score = 213 bits (542), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 159/484 (32%), Positives = 248/484 (51%), Gaps = 58/484 (11%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK-----KPFPRKASLRYFFGLDG 58 + +TI A++T + IIR+SG F + + ++ P P L Y +D Sbjct: 2 QNDTIAAIATPQGVGGVGIIRVSGSDAFSLVAPLLRRPSREDIPPVPPTHQLTYRVIIDP 61 Query: 59 ---RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 ILD+ L+ +P ++T ED E HGG ++ IL + R+ANPGEF+ Sbjct: 62 ATQEILDEVLVAFMRAPHTYTCEDVVEIQGHGGPLILRRILRSVLAQ-GARMANPGEFTL 120 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSF---- 171 RAF NG++DL +AE++ DLI S+TE+ +RL+M+ + G+LS D++ H R+ Sbjct: 121 RAFLNGRLDLAQAEAVMDLIGSQTEVGQRLAMQQLRGKLS-------DQVEHARTSMLGA 173 Query: 172 ---IEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHS 228 IEA +DF E+ D+ ++E+L I + I+ ++ + G + R G + I+G Sbjct: 174 IARIEASIDFPED-DIPTPQAEELLPFIEEAQRQIARLLAGSEQGRLYRQGLRTAIIGRP 232 Query: 229 NAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEG 288 N GKSSL NAL + + AIVT I GTTRD + +L G + + DTAGI T D VE+ G Sbjct: 233 NVGKSSLLNALLRIERAIVTPIAGTTRDTVEEIANLRGIPLHLIDTAGITPTQDPVEQLG 292 Query: 289 IKRTFLEVENADLIL---------------LLKEINS-----KKEISFPKNIDFIFIGTK 328 ++R+ L E AD+IL + +E+ + K+E + + I K Sbjct: 293 VQRSRLAAETADVILHVFDGATALTEQDWQVAQELRAMGYGEKREGQAARRPVVVVI-NK 351 Query: 329 SD---------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL-SNKFKKLPFSIPSHKR 378 +D + S + + S+ TGEGLE L N + ++ + + + R Sbjct: 352 ADCEQVIDVAAIQSFWQDASLVQTSTLTGEGLEALENTLAELVQAGNVSGNESVLITSAR 411 Query: 379 HLYHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKF 436 H L + +L A SL +K LD ++ +LR A +LG++TG E LLD IFS+F Sbjct: 412 HQEALRRGAEHLNAAILSLGQK-VPLDFVSIDLRAAYDALGEVTGETASEDLLDRIFSEF 470 Query: 437 CIGK 440 CIGK Sbjct: 471 CIGK 474 >gi|285019932|ref|YP_003377643.1| tRNA modification GTPase [Xanthomonas albilineans GPE PC73] gi|283475150|emb|CBA17649.1| putative trna modification gtpase protein [Xanthomonas albilineans] Length = 447 Score = 213 bits (542), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 143/446 (32%), Positives = 234/446 (52%), Gaps = 16/446 (3%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A++T + ++R+SGP+ ++ + + PR A +F G LD G+ Sbjct: 7 DTIAAIATAPGAGGVGMVRVSGPAAGRIADGL-GLGALLPRSARYAHFRDAQGDTLDDGI 65 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + FP+P SFTGED E HG ++ ++ ++ R A PGEFS RAF N K+DL Sbjct: 66 ALWFPAPRSFTGEDVLELQAHGSPVLLRQLVARCCEL-GARPARPGEFSERAFLNRKLDL 124 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ADLI++ R + + G S +++ +R +EA +DF++E ++ Sbjct: 125 AQAEAIADLIAAGDLRAARAARRSLDGVFSRRVEDLAEQVIRLRLHVEAAIDFADEA-LE 183 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 +V + ++ D++ + + G +R+G V++G NAGKSSL NALA A Sbjct: 184 TLGGAQVRTGLQQVRADLAQLHLEAERGRRLRDGLHAVLVGPPNAGKSSLLNALAGSARA 243 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTDI GTTRD L + ++G + + DTAG+R+ D +E+EG++R LE++ ADL L++ Sbjct: 244 IVTDIAGTTRDTLHETVCVDGLELTLVDTAGLRDGGDAIEREGMRRARLELQRADLALVV 303 Query: 306 ---KEINSKKEISFPKNIDF---IFIGTKSDLYSTYTEEYDHL--ISSFTGEGLEEL--- 354 +++ + D ++I K DL + + IS+ TG GLE+L Sbjct: 304 LDARDVAVGRAAVAEAIADVPQRLWIHNKCDLLTKVPDACADTVYISAATGSGLEQLHLH 363 Query: 355 INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASV 414 + I + + + FS + RH+ L + + A + L++ AE LRL Sbjct: 364 LRAIACATAGEGSEGEFS--ARIRHVEALQRASMHAAAAMAELEHERLELAAEELRLTHN 421 Query: 415 SLGKITGCVDVEQLLDIIFSKFCIGK 440 +L +I G + LL IFS FCIGK Sbjct: 422 ALCEIVGTFSADDLLGRIFSSFCIGK 447 >gi|256618548|ref|ZP_05475394.1| tRNA modification GTPase [Enterococcus faecalis ATCC 4200] gi|256598075|gb|EEU17251.1| tRNA modification GTPase [Enterococcus faecalis ATCC 4200] Length = 465 Score = 213 bits (542), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 148/463 (31%), Positives = 256/463 (55%), Gaps = 30/463 (6%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK-KKPFPRKASLRYFFG-----LD 57 E +TI A+ST AISI+RLSG + + + K + + +G + Sbjct: 7 EFDTIAAISTPPGEGAISIVRLSGEQAVAIANKVYRSGTKDLAKVPTHTIHYGHIVDPQN 66 Query: 58 GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 +++D+ +L V +P++FT ED E + HGGI VVN +L+ L + R+ PGEF++RA Sbjct: 67 DQLIDEVMLSVMRAPKTFTREDVVEINCHGGIVVVNQLLQLLLR-EGARMGEPGEFTKRA 125 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NG++DL +AE++ DLI ++T+ +++ + G LS+L ++ + + +E ++D Sbjct: 126 FLNGRMDLSQAEAVMDLIRAKTDKAMNVALNQLDGNLSALIRSLRQEILNTLAQVEVNID 185 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 + E +DV+ ++K +L F+K I ++ K G+I+R G I+G N GKSSL N Sbjct: 186 YPEYDDVEELTTKLLLEKAEFVKAQIQQLLTTAKQGKILREGLSTAIIGRPNVGKSSLLN 245 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 L +++ AIVTDI GTTRDV+ +++ G +K+ DTAGIRET+DIVE+ G++R+ + Sbjct: 246 HLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDIVERIGVERSRKALA 305 Query: 298 NADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTY-TEEYDHL------ 342 ++DLILL+ +N +E++ K + + + K DL + E L Sbjct: 306 DSDLILLV--LNQSEELTEEDRQLLEATKGLKRVILLNKMDLPTKLDPNELQELVPAEEI 363 Query: 343 --ISSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399 +S + GL++L KI + + + + S+ RH+ L Q L+ +N + Sbjct: 364 LSVSVLSNTGLDQLEAKIADLFFGGQTGEKDATYISNTRHIALLDQAALSLQEV-INGIE 422 Query: 400 CGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G+ D++ ++ LG+I G ++L+ +FS+FC+GK Sbjct: 423 AGMPVDLVQIDMTRCWDYLGEIVGDSVQDELITQLFSQFCLGK 465 >gi|229181730|ref|ZP_04309053.1| tRNA modification GTPase mnmE [Bacillus cereus 172560W] gi|228601763|gb|EEK59261.1| tRNA modification GTPase mnmE [Bacillus cereus 172560W] Length = 458 Score = 213 bits (542), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 145/459 (31%), Positives = 252/459 (54%), Gaps = 24/459 (5%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLD---G 58 E +TI A+ST AI+I+R+SG + I K K P ++ Y +D Sbjct: 2 EFDTIAAISTALGEGAIAIVRVSGDDAVEKVNRIFKGKDLTEVPSH-TIHYGHIVDLDTN 60 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 +++++ ++ + +P +FT E+ E + HGG+ VN +L+ L +RLA PGEF++RAF Sbjct: 61 QVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAF 119 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG+IDL +AE++ DLI ++T+ +++ M G LS L G ++ + +E ++D+ Sbjct: 120 LNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGLLRQEILETLAHVEVNIDY 179 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E +DV+ + ++ ++++I + K G+I+R G I+G N GKSSL N+ Sbjct: 180 PEYDDVEEMTHNILIEKATHVRSEIEKILETSKQGKILREGIATAIIGRPNVGKSSLLNS 239 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L ++ AIVTDI GTTRDV+ +++ G +K+ DTAGIRET+D+VE+ G++R+ + Sbjct: 240 LVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSKEMMSQ 299 Query: 299 ADLILLL----KEINSKKEISFP--KNIDFIFIGTKSDLYSTYTEEY-------DHLISS 345 ADL+L++ + + ++ E F + +FI I K+DL E + +I++ Sbjct: 300 ADLVLVVVNYSEALTNEDEDLFRAVQGKEFIVIVNKTDLPQAIDMERVTELAAGNRVITT 359 Query: 346 --FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCG 401 +G++EL I + + S+ RH+ L+Q + + + E Sbjct: 360 SLIEEQGIDELEKAIADLFFEGTIDSADMTYVSNARHIGLLTQAGKTIGDAVEAIENGVP 419 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+ITG E L+D +FS+FC+GK Sbjct: 420 IDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458 >gi|222152198|ref|YP_002561358.1| tRNA modification GTPase TrmE [Macrococcus caseolyticus JCSC5402] gi|222121327|dbj|BAH18662.1| tRNA modification GTPase TrmE [Macrococcus caseolyticus JCSC5402] Length = 454 Score = 213 bits (542), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 147/443 (33%), Positives = 243/443 (54%), Gaps = 23/443 (5%) Query: 20 ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG-----LDGRILDKGLLIVFPSPES 74 + I+RLSG + + + K K AS +G I+++ ++ V +P + Sbjct: 13 LRIVRLSGNDAISIADKLYKGKHQLSDVASHTINYGHIIDPASNEIIEEVMVAVMRAPRT 72 Query: 75 FTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADL 134 +T ED E + HGGI VN +LE LA RLA PGEF++RAF NG+IDL +AE+ D Sbjct: 73 YTREDIVEINCHGGIMTVNRVLE-LALTNGARLAEPGEFTKRAFLNGRIDLSQAEATMDF 131 Query: 135 ISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194 I S+T+ R++M+ + G LS L + I + +E ++D+ E +DV+ ++ ++ Sbjct: 132 IRSKTDRASRVAMQQIEGRLSVLIKGLRQSILEILAQVEVNIDYPEYDDVEEATNTFLME 191 Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254 + ++ I++ + G+I+R G VI+G N GKSS+ N L + + AIVT+I GTT Sbjct: 192 EARKIEGSITNLLQTANQGKILREGLSTVIVGKPNVGKSSMLNNLIQDNKAIVTEIAGTT 251 Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL---KEINSK 311 RDVL +++ G +++ DTAGIRET+DIVEK G++R+ ++ ADLIL + EI ++ Sbjct: 252 RDVLEEYVNVRGVPLRLVDTAGIRETEDIVEKIGVERSREALKKADLILYVLNNNEILTE 311 Query: 312 KEISFP---KNIDFIFIGTKSDLYSTYT-EEYDHLI--------SSFTGEGLEELINKIK 359 ++ KN D I I K+DL + EE ++ S + +G+EEL +I+ Sbjct: 312 EDYKLAEIIKNEDVIVIINKTDLETKLDLEEVKTMVGNAPIVRTSMLSQQGIEELEEQIR 371 Query: 360 SI-LSNKFKKLPFSIPSHKRHLYHL-SQTVRYLEMASLNEKDCGLDIIAENLRLASVSLG 417 ++ + + + S+ RH+ L S + S E +D+I +L LG Sbjct: 372 TLFFAGEVSNQDMTYVSNARHISLLKSAKTSIGDAISAAELGVPVDMIQIDLIKTWELLG 431 Query: 418 KITGCVDVEQLLDIIFSKFCIGK 440 ++ G + L+D +FS+FC+GK Sbjct: 432 EVIGESVDDGLIDQLFSQFCLGK 454 >gi|225570320|ref|ZP_03779345.1| hypothetical protein CLOHYLEM_06417 [Clostridium hylemonae DSM 15053] gi|225160852|gb|EEG73471.1| hypothetical protein CLOHYLEM_06417 [Clostridium hylemonae DSM 15053] Length = 478 Score = 213 bits (542), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 161/476 (33%), Positives = 249/476 (52%), Gaps = 49/476 (10%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK----KKKPFPRKASLRYFFGLDGR-I 60 +TI A+ST S I I+R+SG F + + I + KK + ++ Y + DG Sbjct: 11 QTIAAISTAMSDSGIGIVRMSGGKAFMIADRIYEGKNGKKLAAQKSHTIHYGYIKDGEET 70 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+ L+++ P S+TGED+ E + HGG+ +V +LE + K R A PGEF++RAF N Sbjct: 71 IDEVLVMLMRGPHSYTGEDTVEVNCHGGVYLVRRVLELMIK-NGARPAEPGEFTKRAFLN 129 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G++DL +AE++ DLI+S+ E + S+ + G + S +K+ + +FIE LD E Sbjct: 130 GRLDLSQAEAVGDLIASQNEYALKSSVSQLKGNVKSKINDIRNKIIYHTAFIETALDDPE 189 Query: 181 EEDVQNFSS--KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 V + + +N++L N + S G+ II+ G K VI+G NAGKSSL N Sbjct: 190 HISVDGYGEELRSAVNELLLEINKLLSTCDNGR---IIKEGIKTVIVGRPNAGKSSLLNV 246 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L ++ AIVT++ GTTRD+L ++L+G + I DTAGIRETDDIVEK G+ + + + Sbjct: 247 LVGEERAIVTEVAGTTRDILEEHINLQGISLNIIDTAGIRETDDIVEKIGVDKAKMYADE 306 Query: 299 ADLIL---------------LLKEINSKKEISFPKNIDFIFIGTK---SDLYSTYTEEYD 340 ADLIL +LK I K I D I TK D+Y+ + Sbjct: 307 ADLILYVIDASAPLDENDRQILKMIYGKPAIILLNKTDLDMIITKEKIKDVYNASNPANN 366 Query: 341 HL----------ISSFTGEGLEELINKIKSILSNKFK-KLPFS---IPSHKRHLYHLSQT 386 ++ +S+ G+ + +K++ F+ L F+ ++ RH L Sbjct: 367 NISKSKEIQVIEVSAKNQNGIADFEEAVKNMF---FEGNLSFNDEIYITNVRHKAALQDA 423 Query: 387 VRYLEMASLNEKDCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L+ ++ D G+ D + +L A SLG ITG E L++ IFSKFC+GK Sbjct: 424 GGSLQKV-IDSIDMGMPEDFYSIDLLDAYKSLGDITGDTMGEDLINEIFSKFCMGK 478 >gi|282901593|ref|ZP_06309512.1| tRNA modification GTPase TrmE [Cylindrospermopsis raciborskii CS-505] gi|281193519|gb|EFA68497.1| tRNA modification GTPase TrmE [Cylindrospermopsis raciborskii CS-505] Length = 460 Score = 213 bits (542), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 149/452 (32%), Positives = 238/452 (52%), Gaps = 45/452 (9%) Query: 19 AISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL-----DGRILDKGLLIVFPS 71 ++ I+R+SG + F K+ + S R +G +++D+ LL++ + Sbjct: 24 SVGIVRVSGDQAMAIAHTLFYTPGKQIW---ESHRILYGFVRQPETKQVVDEALLLIMKA 80 Query: 72 PESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESL 131 P SFT ED EFH HGGI V +L+ L RLA PGEF+ RAF NG++DL +AES+ Sbjct: 81 PRSFTREDVVEFHCHGGIIPVQQVLQ-LCLENGARLAQPGEFTLRAFLNGRLDLTQAESI 139 Query: 132 ADLISSETEMQRRLSMEGMSGELS----SLYGQWIDKLTHIRSFIEADLDFSEEEDVQNF 187 ADL+ +++ + ++ G+ G+L+ SL Q +D L I EA +DF EED+ Sbjct: 140 ADLVGAKSPQAAQTALAGLRGKLAQPIRSLRNQCLDILAEI----EARIDF--EEDLPPL 193 Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247 + ++ I + I+ +S + GE++R+G K+ I+G N GKSSL NA ++ D AIV Sbjct: 194 DQERIITQINQISVKIARLLSTKEKGELLRSGLKVAIVGRPNVGKSSLLNAWSQCDRAIV 253 Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL-- 305 TD+PGTTRD++ L + G +++ DTAGIRET D VEK G++R+ +ADL+LL Sbjct: 254 TDLPGTTRDIVESQLVVGGIPIQVLDTAGIRETVDQVEKLGVERSRQAANSADLVLLTID 313 Query: 306 -------------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGE--G 350 +++ + I ID + DL + + + + + G Sbjct: 314 ATAGWQSGDEEIYQQVKHRPLILVINKIDLV-----EDLGGICSPNIEKAVKTAAAQNRG 368 Query: 351 LEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQT-VRYLEMASLNEKDCGLDIIAEN 408 +E+L I ++ + K + ++R L + + +++ LD + Sbjct: 369 IEDLEQAILEVVQTQKIVAGDLDLAINQRQAAALIKAQIDLVQVQKTIVDQLPLDFWTID 428 Query: 409 LRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LR A +LG+ITG E LLD+IFS+FCIGK Sbjct: 429 LRGAIHALGEITGEEVTESLLDLIFSRFCIGK 460 >gi|301299788|ref|ZP_07206030.1| tRNA modification GTPase TrmE [Lactobacillus salivarius ACS-116-V-Col5a] gi|300852601|gb|EFK80243.1| tRNA modification GTPase TrmE [Lactobacillus salivarius ACS-116-V-Col5a] Length = 464 Score = 213 bits (541), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 155/462 (33%), Positives = 252/462 (54%), Gaps = 30/462 (6%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLDGRI- 60 E +TI A+ST AISI+RLSG ++ + K K + P ++ Y ++ + Sbjct: 8 EFDTIAAISTPPGEGAISIVRLSGEDAVKIANKVFKGKNLEKVPTH-TINYGHIVNPKTN 66 Query: 61 --LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 LD+ ++ V +P +FT ED E + HGGI N IL+ L RLA PGEF++RAF Sbjct: 67 EELDEVMVSVMLAPRTFTREDIIEINCHGGIVPTNQILQLLLS-NGARLAEPGEFTKRAF 125 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 +G+IDL +AES+ DLI ++T+ ++++ + G LS L + + + +E ++D+ Sbjct: 126 LHGRIDLTQAESVMDLIRAKTDRSMKVALNQLDGNLSHLIRNLRQDILDVLAQVEVNIDY 185 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E +DV+ ++K + + +K I ++ K G+++R G I+G N GKSSL N Sbjct: 186 PEYDDVETLTTKMLREKAIEVKKSIQQLLTTAKQGKVLREGLATAIVGRPNVGKSSLLNH 245 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L +D AIVTDI GTTRDV+ +++ G +K+ DTAGIRET+D VE+ G++R+ +E Sbjct: 246 LLHEDKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDKVERIGVERSRKAIEQ 305 Query: 299 ADLILLLKEINSKKE--------ISFPKNIDFIFIGTKSDLYSTYTEE-------YDHLI 343 ADL++L+ +N+ +E I I I K+DL + D LI Sbjct: 306 ADLVMLV--LNASEELTDEDKELIQATSGKKRIVILNKTDLPQKLNMDEVRELVPEDELI 363 Query: 344 SS--FTGEGLEELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMASLNEKDC 400 ++ G+++L KI + + +I ++ RH+ L+Q L+ A L D Sbjct: 364 TTSVLKKTGVDKLEEKIAELFFGGIENSQSTIMVTNARHIALLNQAEDSLD-AVLQGLDS 422 Query: 401 GL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G+ D+ ++ A LG+ITG ++LL +FS+FC+GK Sbjct: 423 GMPVDLCQIDMTNAWDELGEITGDSYQDELLTQLFSQFCLGK 464 >gi|255931495|ref|XP_002557304.1| Pc12g04350 [Penicillium chrysogenum Wisconsin 54-1255] gi|211581923|emb|CAP80062.1| Pc12g04350 [Penicillium chrysogenum Wisconsin 54-1255] Length = 612 Score = 213 bits (541), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 124/323 (38%), Positives = 187/323 (57%), Gaps = 25/323 (7%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP--RKASLRYFF-----GLDGR 59 TI+A+ST +AI+++R+SGP+C + + +C P P R A LR + Sbjct: 68 TIYALSTAIGRAAIAVVRVSGPACASIYKSLCPNH-PLPKARYAVLRTLYDPTQPPTPNT 126 Query: 60 ILDKGLLIV-FPSPESFTGEDSAEFHVHGGIAVVNGILEELAKM----PNLRLANPGEFS 114 ILD G L++ FPSP + TGED E H+HGG A+ +L +A+ +R A PGEF+ Sbjct: 127 ILDAGALVLYFPSPRTATGEDILELHIHGGPAITKAVLSAIAQTNTPEQTVRYAEPGEFT 186 Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174 RRAF N ++ L + E+L D +S++TE QRRL++ G S L + Y +W L + R +EA Sbjct: 187 RRAFMNDRLSLPQIEALGDTLSADTEQQRRLAVRGSSDALLNRYERWRQGLLYARGELEA 246 Query: 175 DLDFSEEEDVQNFSSK---EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAG 231 +DFSE++ + + V + L I HI+ GE++RNG ++ +LG NAG Sbjct: 247 LIDFSEDQHFDESTEELVSSVATQVRALSVQIGFHIANASRGELLRNGIRVALLGAPNAG 306 Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-------ETDDI- 283 KSSL N + K+ AIV+ GTTRD++ + +DL G+ K+ D AGIR ET I Sbjct: 307 KSSLLNRVVGKEAAIVSTEQGTTRDIVDVGVDLGGWYCKLGDMAGIRAEGSGDGETVVIG 366 Query: 284 -VEKEGIKRTFLEVENADLILLL 305 VEKEGI+R +D+++++ Sbjct: 367 PVEKEGIRRARERALESDVVIVV 389 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 3/52 (5%) Query: 392 MASLNEKDCGLDIIAENLRLASVSLGKITG---CVDVEQLLDIIFSKFCIGK 440 +AS E + + AE+LR A+ L KITG DVE +L ++F KFC+GK Sbjct: 561 LASHAESEVDIVTAAEHLRFAADMLAKITGKGESGDVEDVLGVVFEKFCVGK 612 >gi|324329435|gb|ADY24695.1| tRNA modification GTPase TrmE [Bacillus thuringiensis serovar finitimus YBT-020] Length = 458 Score = 213 bits (541), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 146/459 (31%), Positives = 251/459 (54%), Gaps = 24/459 (5%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLD---G 58 E +TI A+ST AI+I+R+SG + I K K P ++ Y +D Sbjct: 2 EFDTIAAISTALGEGAIAIVRVSGDDAVEKVNRIFKGKDLTEVPSH-TIHYGHIVDLDTN 60 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 +++++ ++ + +P +FT E+ E + HGG+ VN +L+ L +RLA PGEF++RAF Sbjct: 61 QVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAF 119 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG+IDL +AE++ DLI ++T+ +++ M G LS L G + + +E ++D+ Sbjct: 120 LNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGCLRQDILETLAHVEVNIDY 179 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E +DV+ + ++ ++ +I+ + K G+I+R G I+G N GKSSL N+ Sbjct: 180 PEYDDVEEMTHNILIEKATHVRAEIAKILETSKQGKILREGIATAIIGRPNVGKSSLLNS 239 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L ++ AIVTDI GTTRDV+ +++ G +K+ DTAGIRET+D+VE+ G++R+ + Sbjct: 240 LVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSKEMMSQ 299 Query: 299 ADLILLL----KEINSKKEISFP--KNIDFIFIGTKSDLYSTYTEEY-------DHLISS 345 ADL+L++ + + ++ E F + DFI I K+DL E + +I++ Sbjct: 300 ADLVLVVVNYSEALTNEDEDLFRAVQGKDFIVIVNKTDLPQAIDMERVIELAAGNRIITT 359 Query: 346 --FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCG 401 +G++EL I + + S+ RH+ L+Q + + + E Sbjct: 360 SLIEEQGIDELETAIADLFFEGTIDSADVTYVSNARHIGLLTQAGKTIGDAIEAIENGVP 419 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+ITG E L+D +FS+FC+GK Sbjct: 420 IDMVQIDLTRTWEILGEITGDTVHESLIDQLFSQFCLGK 458 >gi|20809125|ref|NP_624296.1| tRNA modification GTPase TrmE [Thermoanaerobacter tengcongensis MB4] gi|25009498|sp|Q8R6K8|MNME_THETN RecName: Full=tRNA modification GTPase mnmE gi|20517805|gb|AAM25900.1| predicted GTPase [Thermoanaerobacter tengcongensis MB4] Length = 460 Score = 213 bits (541), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 168/472 (35%), Positives = 255/472 (54%), Gaps = 48/472 (10%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRK-------ASLRYFFGL 56 E +TI A+ST + I I+R+SG E I K +PF +K ++ Y + Sbjct: 2 EFDTIAAISTFPGEAGIGIVRISGDEAL---EIISKIFRPFRKKDIKSVKSHTIHYGHIV 58 Query: 57 D---GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEF 113 D G + D+ L+ V P ++T ED E + HGGI V + ILE + K RLA PGEF Sbjct: 59 DPETGEVYDEVLVTVMRKPNTYTREDVVEINCHGGIVVSSKILELVLKH-GARLAEPGEF 117 Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173 ++RAF NG+IDL +AE++ D+I+S+T + R + + ++G L +K+ + S + Sbjct: 118 TKRAFLNGRIDLSQAEAVIDIITSKTMLANRYAQKQLAGVLGQKMKDLKNKIMELLSHLL 177 Query: 174 ADLDFSEEEDVQNFS------SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227 A +DF EE+ + +K++LNDI +L I+ + G IIR G K I+G Sbjct: 178 ALIDFPEEDVEELEREEIKRRAKDILNDIEYL-------IASSESGRIIREGLKTAIIGK 230 Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKE 287 N GKSSL NAL K++ AIVTDIPGTTRDV+ ++++G +K+ DTAGIR TD++VEK Sbjct: 231 PNVGKSSLLNALLKQNRAIVTDIPGTTRDVIEEYMNIKGIPIKLIDTAGIRHTDELVEKI 290 Query: 288 GIKRTFLEVENADLIL--------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTY-TEE 338 G++++ + ADLIL L KE +I KNI IF+ K DL EE Sbjct: 291 GVEKSKEVLAEADLILFVLDASRDLTKEDYEIFDILSGKNI--IFVLNKVDLPKKIDEEE 348 Query: 339 YDHL--------ISSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRY 389 L +S+ GL++L ++I + + K I ++ RH L ++ Sbjct: 349 LKKLVGNGIIVEVSTVERTGLDKLESEIYNLVFKGKVSATEEEIITNARHREVLINAKKH 408 Query: 390 LE-MASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +E + EK D+I ++ A +GKITG E +++ IF +FC+GK Sbjct: 409 MESVIEAIEKGYSEDLITIDVNGALNEIGKITGETATEDVINQIFERFCVGK 460 >gi|307128609|ref|YP_003880639.1| tRNA modification GTPase TrmE [Candidatus Sulcia muelleri CARI] gi|306483071|gb|ADM89941.1| tRNA modification GTPase TrmE [Candidatus Sulcia muelleri CARI] Length = 454 Score = 213 bits (541), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 157/462 (33%), Positives = 247/462 (53%), Gaps = 30/462 (6%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC---KKKKPFPRKASLRY-FFGL 56 M +TI A++T + AI++IR+SG + ++ + I KK F K S+ + Sbjct: 1 MLKNNDTIVAIATPSGYGAIAVIRISGKNSIKILKKIFLSFSVKKNFSEKRSINLGYIKS 60 Query: 57 DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 +I+DK L+ +F P+S+TGED E HG I + N +L + RLANPGEF+ R Sbjct: 61 KNKIIDKVLIFIFKKPKSYTGEDIVEISCHGSIYIQNKLLSIIID-QGARLANPGEFTLR 119 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NGKIDL +AES+ D+++SET ++ M G +S+L KL S IE +L Sbjct: 120 AFLNGKIDLCQAESILDIVNSETYFSHEFAINQMRGNISNLIKNLRKKLIDFLSLIEFEL 179 Query: 177 DFSEEE-DVQNF-SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234 DFSEE ++ N+ K++L++I+ + I K+G ++NG + I+G N GKS+ Sbjct: 180 DFSEENYNIINYLEFKKLLDNII---KKLKYLIKSFKIGNALKNGISVSIIGCPNVGKST 236 Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RETDDIVEKEGIKRTF 293 LFN L K + +IV+++ GTTR+ + L + G + DTAGI +T + +EK GIK+T+ Sbjct: 237 LFNKLLKYERSIVSNMAGTTRNYIEDSLIINGIKYRFIDTAGINNKTKNYIEKLGIKKTY 296 Query: 294 LEVENADLILLL---------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLIS 344 ++ +D+IL + K + +P FI I + + IS Sbjct: 297 SNIKKSDIILYVFDNFNKKIIYNKKKKLQKEYPNKKIFIIINKYDLIKKNINYKNIINIS 356 Query: 345 SFTGEGLEELINKIKSILSNKFKKL-----PFSIPSHKRHLYHLSQTVRYLEMASLN-EK 398 + G G+ +L+ KI +N +KK+ + + RH + V YL N EK Sbjct: 357 AKYGYGINKLLYKI----TNFYKKMINLKKNSIVITQTRHYESFKEAVFYLSKVKENLEK 412 Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + ++ ++R A LGK+TG V E++L IFS+FCIGK Sbjct: 413 SIFPEFLSIDIRTALDYLGKVTGEVTNEEILSNIFSQFCIGK 454 >gi|73663753|ref|YP_302534.1| tRNA modification GTPase TrmE [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72496268|dbj|BAE19589.1| putative tRNA modification GTPase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 460 Score = 213 bits (541), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 148/460 (32%), Positives = 248/460 (53%), Gaps = 29/460 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD--- 62 +TI ++ST AI I+RLSG + + + K K+ S +G I+D Sbjct: 5 DTITSISTPMGEGAIGIVRLSGVDAVDIADKLYKGKERLEDVTSHTINYG---HIIDPES 61 Query: 63 -----KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 + ++ V +P++FT ED E + HGGI +N ILE L R+A+PGE+++RA Sbjct: 62 NEVVEEVMVSVLRAPKTFTREDIVEINCHGGILTINRILE-LTMTYGARMADPGEYTKRA 120 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NG+IDL +AE++ D I S+T+ +++M + G LS + + + I + +E ++D Sbjct: 121 FLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDMIKRQRQSILEILAQVEVNID 180 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 + E +DV++ +++ +L +K +I+ + G G+I+R G VI+G N GKSS+ N Sbjct: 181 YPEYDDVEDATTEVLLGKSNEIKTEINKLLDTGTQGKIMREGLSTVIVGKPNVGKSSMLN 240 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 L + + AIVT++PGTTRD L +++ G +++ DTAGIR+T+DIVE+ G++R+ + Sbjct: 241 NLIQDNKAIVTEVPGTTRDTLEEYVNVRGVPLRLVDTAGIRDTEDIVERIGVERSRKALG 300 Query: 298 NADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYT-EEYDHLI------- 343 ADLIL + N +K KN D I I K DL +E +I Sbjct: 301 EADLILFVLNYNERLTDEDRKLYEVIKNEDAIVIVNKMDLDKHLDLDEVKDMIGDMPLIQ 360 Query: 344 -SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDC 400 S EG+++L +I+ + + + S+ RH+ L Q ++ A E Sbjct: 361 TSMLKQEGIDQLEIQIRDLFFGGDVQNQDMTYVSNSRHISLLKQARNTIQDAIDAAESGV 420 Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+I G ++L+D +FS+FC+GK Sbjct: 421 PMDMVQIDLTRTWEILGEIIGESASDELIDQLFSQFCLGK 460 >gi|322411935|gb|EFY02843.1| tRNA modification GTPase TrmE [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 458 Score = 213 bits (541), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 146/464 (31%), Positives = 261/464 (56%), Gaps = 32/464 (6%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD- 57 + E +TI A+ST AI I+RLSG + + + K K + AS +G +D Sbjct: 3 ITKEFDTITAISTPLGEGAIGIVRLSGTDALAIAQSVFKGKN-LEQVASHTINYGHIVDP 61 Query: 58 --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 G I+D+ ++ V +P++FT E+ E + HGGIAV N IL+ L + R+A PGEF++ Sbjct: 62 KTGTIVDEVMVSVMLAPKTFTRENVIEINTHGGIAVTNEILQLLIRQ-GARMAEPGEFTK 120 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG++DL +AE++ D+I ++T+ ++++ + G LS L ++ + + +E + Sbjct: 121 RAFLNGRVDLTQAEAVMDIIRAKTDKAMTIAVKQLDGSLSQLINDTRQEILNTLAQVEVN 180 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +D+ E +DV+ ++ + + + + + K G+I+R G I+G N GKSSL Sbjct: 181 IDYPEYDDVEEMTTALLREKTQEFQKLLKNLLRTAKRGKILREGLSTAIIGRPNVGKSSL 240 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N L ++D AIVTDI GTTRDV+ ++++G +K+ DTAGIRETDD+VE+ G++R+ Sbjct: 241 LNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAGIRETDDLVEQIGVERSKKA 300 Query: 296 VENADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTYTEEYDHL----- 342 ++ ADL+LL+ +N+ + ++ ++ + I + K+DL E + L Sbjct: 301 LQEADLVLLV--LNASEPLTDQDRSLLYLSQDSNRIILLNKTDLEQKI--ELEQLPADLI 356 Query: 343 -ISSFTGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK- 398 IS T ++ + ++I + + + + S+ RH+ + + V+ LE ++N+ Sbjct: 357 PISVLTNHNIDLIEDRINQLFFDNAGLVEQDATYLSNARHISLIEKAVQSLE--AVNDGL 414 Query: 399 --DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+ITG ++L+ +FS+FC+GK Sbjct: 415 ALGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 458 >gi|325297682|ref|YP_004257599.1| tRNA modification GTPase mnmE [Bacteroides salanitronis DSM 18170] gi|324317235|gb|ADY35126.1| tRNA modification GTPase mnmE [Bacteroides salanitronis DSM 18170] Length = 458 Score = 213 bits (541), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 155/466 (33%), Positives = 245/466 (52%), Gaps = 34/466 (7%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFI---CKKKKPFPRKASLRYFFGL- 56 MN +++TI A++T A AI I+R+SGP + I P + FG Sbjct: 1 MN-QQDTICAIAT-AQGGAIGIVRVSGPDAVTLTGRIFTPIGSTIPLTERKPYTLAFGHI 58 Query: 57 ---DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEF 113 G I+D+ L+ VF +P S+TGED+ E HG ++ ++ L R A PGE+ Sbjct: 59 KNSKGEIIDEVLVSVFRAPHSYTGEDATEISCHGSAYILQQVMHLLIGQ-GCRTAMPGEY 117 Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173 ++RAF NGK+DL +AE++ADLI+S +E RL+M M G S + ++L H+ S +E Sbjct: 118 TQRAFLNGKMDLSQAEAVADLIASTSEATHRLAMNQMRGGFSRELAKLRNQLLHLTSLME 177 Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQG-KLGEIIRNGYKIVILGHSNAGK 232 +LDFS+ E+++ F+ + L + + SH++ G I+NG + I+G +NAGK Sbjct: 178 LELDFSDHEELE-FADRTELQALAAQIEQLISHLANSFHAGNAIKNGIPVAIIGETNAGK 236 Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292 S+L NAL K++ AIV+DI GTTRD++ + L G + DTAGIR+T D +E GI+R+ Sbjct: 237 STLLNALVKEERAIVSDIHGTTRDIIEDTISLNGITFRFIDTAGIRQTQDTIEALGIERS 296 Query: 293 FLEVENADLILLLKEINSKKEISFP----------KNIDFIFIGTKSDLYSTYT----EE 338 F ++ A +++L+ + S+ E +F + I K DL T T + Sbjct: 297 FQAIDRAQIVILVCD-KSQGESAFQAFYRQVAGRLEGKQVIVALNKCDLADTPTFLSPQG 355 Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH----LYHLSQTVRYLEMAS 394 IS+ G+ + L K+ + + + I ++ RH ++ L+ R E S Sbjct: 356 TVIEISAKKGQNIIALQEKLVELAALPDIQTGDVIVTNARHYEALIHALAAIRRVQEGLS 415 Query: 395 LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 N D I+++LR L I G V +++L IF FCIGK Sbjct: 416 TNLSG---DFISQDLRECIFHLSDIVGDVTTDEVLGSIFEHFCIGK 458 >gi|169832370|ref|YP_001718352.1| tRNA modification GTPase TrmE [Candidatus Desulforudis audaxviator MP104C] gi|205829147|sp|B1I6S2|MNME_DESAP RecName: Full=tRNA modification GTPase mnmE gi|169639214|gb|ACA60720.1| tRNA modification GTPase TrmE [Candidatus Desulforudis audaxviator MP104C] Length = 461 Score = 213 bits (541), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 144/422 (34%), Positives = 219/422 (51%), Gaps = 23/422 (5%) Query: 41 KKPFPRKASLRYFFG--LD---GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGI 95 +K + R ++G +D G +D+ L+ V +P+S+T ED E + HGG+ + I Sbjct: 41 EKDWRAGPGFRMYYGHAVDPGTGETVDEVLVSVMRAPKSYTREDVVEINGHGGVLPLQRI 100 Query: 96 LEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELS 155 L+ + RLA PGEF+RRAF NG++DL++AE++ D+I + T ++++ + G LS Sbjct: 101 LKIVLDC-GARLAGPGEFTRRAFLNGRLDLVQAEAVLDVIRARTGSSLQVALGQLRGGLS 159 Query: 156 SLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEI 215 G + L + + IEA +DF EEEDV + + + L+ + + G + Sbjct: 160 ERIGAMREALLQVLAEIEASIDFPEEEDVPETRLEALAGQLAALEAGCVELLEGAEAGRV 219 Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 R+G + I+G N GKSSL NAL ++ AIVTD+PGTTRDV+ +++ G V++ DTA Sbjct: 220 YRDGLGVAIVGKPNVGKSSLLNALLREKRAIVTDVPGTTRDVIEETVNIRGLPVRLLDTA 279 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE---------------ISFPKNI 320 G+RET D VE+ G+ RT V AD++L++ + S E + + Sbjct: 280 GLRETADTVERLGVARTRDAVAGADMVLVVLDAASGLEDEDRRVLALARGKPLVVLINKV 339 Query: 321 DFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRH 379 D G D + + + G GL EL I +L + + S+ RH Sbjct: 340 DLAPAGIDPDAVRALVDGPVLMAAIIEGRGLNELEETIAGLVLGGRVTGHHTVLISNVRH 399 Query: 380 LYHLSQTVRYLEMA-SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCI 438 + L Q RYLE A S L++ ++R A SLG ITG E LLD IFS FCI Sbjct: 400 QHALEQAGRYLEEARSALVSGMPLEMAVIDIRNALDSLGDITGETAGEDLLDRIFSHFCI 459 Query: 439 GK 440 GK Sbjct: 460 GK 461 >gi|82582309|sp|Q49UI4|MNME_STAS1 RecName: Full=tRNA modification GTPase mnmE Length = 459 Score = 213 bits (541), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 148/460 (32%), Positives = 248/460 (53%), Gaps = 29/460 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD--- 62 +TI ++ST AI I+RLSG + + + K K+ S +G I+D Sbjct: 4 DTITSISTPMGEGAIGIVRLSGVDAVDIADKLYKGKERLEDVTSHTINYG---HIIDPES 60 Query: 63 -----KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 + ++ V +P++FT ED E + HGGI +N ILE L R+A+PGE+++RA Sbjct: 61 NEVVEEVMVSVLRAPKTFTREDIVEINCHGGILTINRILE-LTMTYGARMADPGEYTKRA 119 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NG+IDL +AE++ D I S+T+ +++M + G LS + + + I + +E ++D Sbjct: 120 FLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDMIKRQRQSILEILAQVEVNID 179 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 + E +DV++ +++ +L +K +I+ + G G+I+R G VI+G N GKSS+ N Sbjct: 180 YPEYDDVEDATTEVLLGKSNEIKTEINKLLDTGTQGKIMREGLSTVIVGKPNVGKSSMLN 239 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 L + + AIVT++PGTTRD L +++ G +++ DTAGIR+T+DIVE+ G++R+ + Sbjct: 240 NLIQDNKAIVTEVPGTTRDTLEEYVNVRGVPLRLVDTAGIRDTEDIVERIGVERSRKALG 299 Query: 298 NADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYT-EEYDHLI------- 343 ADLIL + N +K KN D I I K DL +E +I Sbjct: 300 EADLILFVLNYNERLTDEDRKLYEVIKNEDAIVIVNKMDLDKHLDLDEVKDMIGDMPLIQ 359 Query: 344 -SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDC 400 S EG+++L +I+ + + + S+ RH+ L Q ++ A E Sbjct: 360 TSMLKQEGIDQLEIQIRDLFFGGDVQNQDMTYVSNSRHISLLKQARNTIQDAIDAAESGV 419 Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+I G ++L+D +FS+FC+GK Sbjct: 420 PMDMVQIDLTRTWEILGEIIGESASDELIDQLFSQFCLGK 459 >gi|325291447|ref|YP_004267628.1| tRNA modification GTPase trmE [Syntrophobotulus glycolicus DSM 8271] gi|324966848|gb|ADY57627.1| tRNA modification GTPase trmE [Syntrophobotulus glycolicus DSM 8271] Length = 466 Score = 213 bits (541), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 166/478 (34%), Positives = 259/478 (54%), Gaps = 56/478 (11%) Query: 5 KETIFAVSTGALPSAISIIRLSGPS-------CFQVCEFICKKKKPFPRKASLRYFFGLD 57 ++TI A++T I I+RLSG CFQ + + L +FF + Sbjct: 3 EDTIVALATPPGEGGIHIVRLSGRGAGEVINHCFQPVNS-ARWQTQASHTLHLGWFFDGE 61 Query: 58 GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 +I D+ LL SP S+TGED E + HGG+ V I+E RLA PGEFS+RA Sbjct: 62 TKI-DQVLLSRMLSPFSYTGEDVFEINCHGGMIPVRRIIEACLHQ-GARLAGPGEFSKRA 119 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NGK+DL++AE++ DLISS++E+ L++ + G LS ++ I SFIEA +D Sbjct: 120 FLNGKMDLVQAEAIIDLISSKSELSADLAVAQLDGALSDKVQVLRQEILDILSFIEAAID 179 Query: 178 FSEEE-DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 FSE+E D+ +S E I +++ + ++ K G+IIR G VI G N GKSSL Sbjct: 180 FSEDEIDLLTYSQLE--ERIKSVRSKTIAILNGSKTGKIIREGLSTVIAGIPNVGKSSLL 237 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 NAL +++ AIVTDIPGTTRD + + + G L+ + DTAGIR+++D VE GI R++ + Sbjct: 238 NALLREERAIVTDIPGTTRDEIREYVKIGGVLLHLIDTAGIRKSNDPVEMIGINRSWKAI 297 Query: 297 ENADLILLLKEINSKK----------EISFPKNI--DFIFIGTKSDLYSTYTEEYDHLIS 344 + AD++LLL ++ K+ E+ K+ I + K DL S+Y + D LI Sbjct: 298 DEADVVLLLLDVTDKENHSDGCLTEDELRILKDYAEKTIILYNKIDLLSSY-HKADFLIP 356 Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFS--------------------IPSHKRHLYHLS 384 + ++ N+IK+IL + K++ F + S+ R + + Sbjct: 357 A-------QVKNQIKTILFSAKKRIGFKELEAELEKRVFGGDSAVMKPMLSNLRQISEMK 409 Query: 385 QTVRYLEMASLNE--KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + +L+ A+LN + +D+++ ++R + + +ITG E LL IF++FCIGK Sbjct: 410 NCLNHLD-AALNSLALNIPIDLLSIDIRASLECISRITGNNVQEDLLTNIFTRFCIGK 466 >gi|197120417|ref|YP_002140844.1| tRNA modification GTPase TrmE [Geobacter bemidjiensis Bem] gi|197089777|gb|ACH41048.1| tRNA (5-carboxymethylaminomethyl-2-thio-U34) modification GTPase [Geobacter bemidjiensis Bem] Length = 455 Score = 212 bits (540), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 153/459 (33%), Positives = 237/459 (51%), Gaps = 30/459 (6%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DGR 59 ++TI A+ST I I+R+SGP+ Q+ I K K S R+ +G G Sbjct: 4 RDTIAAISTPVGEGGIGIVRISGPAALQIARSIFNAKSNGGLK-SHRFSYGEVVQPGTGD 62 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 ++D+ + + +P S+T ED E HGG VV+ IL L R A PGEF++RAF Sbjct: 63 LVDEAMAVYMKAPNSYTREDVVEIQCHGGTLVVSRILA-LVISQGSRPAEPGEFTKRAFL 121 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NG+IDL++AE++ D+ISS T+ L+ G LS + + + +++EA +DF Sbjct: 122 NGRIDLVQAEAVMDVISSRTDASLALAQHQREGLLSQRISTVKEGIVYALAYVEALIDFP 181 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 E+ DV +VL + ++ + I+ G ++R+G +VI G N GKSSL N L Sbjct: 182 ED-DVNVAVETDVLGKVAPALAELDALIAGFDEGRVLRDGVSVVIAGKPNVGKSSLLNTL 240 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 K+ AIVT +PGTTRD++ +++ G VK+ DTAGIRE++D VE+EG++ + + A Sbjct: 241 LKEKRAIVTSVPGTTRDLIEEVVNINGLPVKLLDTAGIRESEDQVEQEGVRLSLDRIPKA 300 Query: 300 DLIL---------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLIS 344 DL+L +L+ I SK I D DL S + IS Sbjct: 301 DLVLFVIDGSSAFGDEDAAILEAIGSKSCIVVRNKSDLPL---AVDLPSGCSAPV-VAIS 356 Query: 345 SFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCG 401 + TG+G+ +L + I + + F S RH L + L+ N E Sbjct: 357 THTGDGVPQLRDAITNAFMHGHAIDGREFVALSKARHRDALLKARESLQSFVANLESGVN 416 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++++ +LR A ++G++TG + +LD IFS FCIGK Sbjct: 417 MELLPVDLRDALDAVGEVTGETTADDVLDRIFSSFCIGK 455 >gi|85858983|ref|YP_461185.1| tRNA synthase [Syntrophus aciditrophicus SB] gi|123516272|sp|Q2LSF6|MNME_SYNAS RecName: Full=tRNA modification GTPase mnmE gi|85722074|gb|ABC77017.1| tRNA synthase [Syntrophus aciditrophicus SB] Length = 457 Score = 212 bits (540), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 157/468 (33%), Positives = 254/468 (54%), Gaps = 45/468 (9%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK------KPFPRKASLRYFFGLD- 57 K+TI A++T A I I+R+SG + + K KP RY + D Sbjct: 3 KDTIAAIATPAGTGGIGIVRISGSEAASILNLLFKSSHSVTLFKP-------RYLYHGDL 55 Query: 58 -----GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGE 112 G+++D+ L+ + +P S+TGED+ E + HGGI V+ +L + + RLA+PGE Sbjct: 56 SDPQTGQVIDEVLVSLMKAPRSYTGEDTLEIYCHGGILVLESVLLAVLR-SGARLADPGE 114 Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172 F+RRAF N +IDL +AE++ D+I + T ++ + G+L D+L ++ + Sbjct: 115 FTRRAFLNDRIDLTQAEAVGDVIMARTSKGLEAAVSHLKGQLKQKIDSLRDELIDVQVLL 174 Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232 E+ +DF+E DV+ S EVL+ + L +D+ + +S G++ R+G +VI G N GK Sbjct: 175 ESAIDFTE--DVEFPSPSEVLSKLERLSSDLEALLSTYDQGKVYRHGATVVIAGKPNTGK 232 Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292 SSL N L ++ AIVT +PGTTRD + + ++G V++ DTAGI TDD++E EGI+ Sbjct: 233 SSLLNCLLQEKRAIVTPVPGTTRDFIEEAISIQGVSVRMIDTAGIHPTDDLIECEGIRMV 292 Query: 293 FLEVENADLILLL----KEIN--SKKEISFPKNIDFIFIGTKSDLYSTYTEE-------- 338 + ++ AD ++LL K++ +K + + + + + K+DL + EE Sbjct: 293 WEKLATADGVILLLDGSKDLTDEDRKILKRLQGYNLLPVINKADLDHSLKEEDIIACFPG 352 Query: 339 YDHL-ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK-RHLYHLSQTVRYLE--MAS 394 D L +S+ GEG+ L KI ++ K + + + RH L +T + + +AS Sbjct: 353 TDPLWVSAKFGEGIAVLKEKIYDLVLEKAGEQDGDVLINSLRHKMALEKTRQQVSQALAS 412 Query: 395 LNEKDCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L E GL + A ++R A +LG+I G E +LD IFS FCIGK Sbjct: 413 LQE---GLSQEFAALDIREALEALGEIAGETVTEDILDRIFSSFCIGK 457 >gi|332360804|gb|EGJ38610.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis SK49] Length = 457 Score = 212 bits (540), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 146/460 (31%), Positives = 259/460 (56%), Gaps = 24/460 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLDGR 59 + E +TI A+ST AI I+RLSG F + + I K K ++ +L Y +D + Sbjct: 2 ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKNLSKVESHTLNYGHIVDPQ 61 Query: 60 ---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 ILD+ ++ SP++FT ED E + HGGIAV N IL+ LA R+A PGEF++R Sbjct: 62 NQEILDEVMVGAMRSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARMAEPGEFTKR 120 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NG++DL +AE++ D+I ++T+ +++ + G LS+L ++ + + +E ++ Sbjct: 121 AFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQEILNTLAQVEVNI 180 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D+ E +DV+ ++K + + +S+ + + G+I+R G I+G N GKSSL Sbjct: 181 DYPEYDDVEEMTTKLMREKTAEFEALLSNLLDTARRGKILREGISTAIIGRPNVGKSSLL 240 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N L ++D AIVTDI GTTRDV+ ++++G +K+ DTAGIRETDD+VE+ G++R+ + Sbjct: 241 NNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEQIGVERSKKAL 300 Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------IS 344 + ADL+LL+ + ++ + ++ + I + K+DL E D L IS Sbjct: 301 QEADLVLLVLNASEPLTDQDRQLLEISQDSNRIVLLNKTDLEEKI--ELDQLPADAIKIS 358 Query: 345 SFTGEGLEELINKIKSIL---SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDC 400 + ++++ +I + + F++ + S+ RH+ + + + L+ + E Sbjct: 359 VLHNQNIDKIEERINQLFFENAGIFEQ-DATYLSNARHISLIEKALESLQAVNQGLEMGM 417 Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ ++ L +ITG ++L+ +FS+FC+GK Sbjct: 418 PVDLLQVDMTRTWEILSEITGDAAPDELITQLFSQFCLGK 457 >gi|158334891|ref|YP_001516063.1| tRNA modification GTPase TrmE [Acaryochloris marina MBIC11017] gi|205829048|sp|B0CBB0|MNME_ACAM1 RecName: Full=tRNA modification GTPase mnmE gi|158305132|gb|ABW26749.1| tRNA modification GTPase TrmE [Acaryochloris marina MBIC11017] Length = 455 Score = 212 bits (540), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 147/443 (33%), Positives = 234/443 (52%), Gaps = 27/443 (6%) Query: 19 AISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFG-----LDGRILDKGLLIVFPS 71 +I I+RLSG + + F K+ + S R +G L +I+D+GLL++ + Sbjct: 19 SIGIVRLSGVEAVSIAKQLFQTPGKQQW---ESHRVLYGYIQQPLTQQIIDEGLLLLMLA 75 Query: 72 PESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESL 131 P S+T ED EFH HGG+ V +LE + LA PGEF+ RAF NG++DL +AE + Sbjct: 76 PRSYTREDVVEFHCHGGMIAVQQVLEACLQA-GAELAQPGEFTLRAFLNGRLDLTQAEGV 134 Query: 132 ADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKE 191 ADL+ + + + ++ G+ G+L+S + + + +EA +DF E+D+ Sbjct: 135 ADLVGARSPQAAQAALAGVQGKLASPIRELRQRCLDTLAEVEARVDF--EDDLPPLDEAG 192 Query: 192 VLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIP 251 V ++ + + + ++ GE++RNG + I+G N GKSSL NA + D AIVTD+P Sbjct: 193 VQAELQDIHATLQAILATADQGELLRNGLTVAIIGRPNVGKSSLLNAWCRCDRAIVTDLP 252 Query: 252 GTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI--- 308 GTTRDV+ L + G +++ DTAGIRET+D VE+ G+ R+ ++ADL+LL + Sbjct: 253 GTTRDVVESQLVVGGIPIQVLDTAGIRETEDQVEQIGVTRSHQAAQSADLVLLTIDASVG 312 Query: 309 ---NSKKEISFPKNIDFIFIGTKSDLYS----TYTEEYDHLISSFTG--EGLEELINKI- 358 + ++ +++ I I K DL Y E ++S+ +G+ EL I Sbjct: 313 WTSDDQQLYQAFQDLPLILIVNKVDLVPQEQVVYPEAIAQVVSTIAAQNQGISELETAIL 372 Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGLDIIAENLRLASVSLG 417 +++ + K ++R L + LE D LD +LR A +LG Sbjct: 373 ETVQTQSLKAANLDWAINQRQAAALQKAQAALEHVQGAIADQLPLDFWTIDLRGAIQALG 432 Query: 418 KITGCVDVEQLLDIIFSKFCIGK 440 +ITG E +LD IFS+FCIGK Sbjct: 433 EITGEDITESVLDRIFSRFCIGK 455 >gi|167629165|ref|YP_001679664.1| tRNA modification GTPase trme [Heliobacterium modesticaldum Ice1] gi|205829157|sp|B0TAB6|MNME_HELMI RecName: Full=tRNA modification GTPase mnmE gi|167591905|gb|ABZ83653.1| tRNA modification GTPase trme [Heliobacterium modesticaldum Ice1] Length = 466 Score = 212 bits (540), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 154/474 (32%), Positives = 247/474 (52%), Gaps = 50/474 (10%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGL-----DG 58 +TI AV+T I I+R+SGP V + + + + + AS G D Sbjct: 4 DTIAAVATPPGEGGIGIVRVSGPGARDVLKAVFRPRYGRGVDDWASHTLHLGTIIHPDDH 63 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 R++D+ L+ +P +FT ED EFH HGG V L + + RLA PGEF+RRAF Sbjct: 64 RVIDEALVAWMVAPRTFTTEDVVEFHCHGGSVPVRETLGAVLRA-GARLAEPGEFTRRAF 122 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD--- 175 G++DL +AE++ ++I ++T +G+ +S L GQ ++ +R + A Sbjct: 123 LGGRLDLAQAEAIIEVIRAKTR-------DGLGAAVSQLEGQLSRRIRKVRDDLLALLAH 175 Query: 176 ----LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAG 231 +DF EE D+ + S+ + D++ ++ I + + + G ++R G++ VI+G N G Sbjct: 176 LEAMIDFPEE-DLPDIGSERICTDLMQIQRQIGDMLERSRTGRVLREGWRTVIVGRPNVG 234 Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR 291 KSSL NAL + AIVT+IPGTTRD + +DL G ++I DTAGIRET+D+VE+ G+++ Sbjct: 235 KSSLMNALLDEQRAIVTEIPGTTRDAIEEYIDLGGIPLRIVDTAGIRETEDVVERIGVEK 294 Query: 292 TFLEVENADLILLL----KEINSKKE---ISFPKNIDFIFIGTKSDLYSTYTEEYDHL-- 342 T +E ADL L++ + ++ E +S + + KSDL +E Sbjct: 295 TREYLEKADLALVVLDGSDSLTAEDETLLLSLAGRPAVVLV-NKSDLAVRRLDEKRLRSL 353 Query: 343 --------ISSFTGEGLEELINKIKSIL--SNKFKKLP----FSIPSHKRHLYHLSQTVR 388 +S+ G GL+EL I+ ++ + P ++ + RH L ++ Sbjct: 354 VGEMPIISVSAKEGWGLKELTELIRRMVYGDDGLGYAPDGGRLALVTQARHREALERSYA 413 Query: 389 YLEMASLNEKDCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +L A L+ G D + +L+ A +LG+ITG E +LD IFS FCIGK Sbjct: 414 HLRQA-LDAVAHGASPDFLTIDLKAAWEALGEITGDTVGEDILDKIFSSFCIGK 466 >gi|320109421|ref|YP_004185011.1| tRNA modification GTPase TrmE [Terriglobus saanensis SP1PR4] gi|319927942|gb|ADV85017.1| tRNA modification GTPase TrmE [Terriglobus saanensis SP1PR4] Length = 449 Score = 212 bits (540), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 145/450 (32%), Positives = 238/450 (52%), Gaps = 21/450 (4%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF-PRKASLRYFFGLDGRILDK 63 ++TI AVST I I+RLSGP + E + + PR+A + G+ +D Sbjct: 7 QDTIVAVSTPPGRGGIGIVRLSGPEARGITEKLLALETALEPRRARFAHLNDETGQRIDD 66 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 ++ F +P S+TGED E HG V+ I+ + R A+ GEF+ RAF G+I Sbjct: 67 AVVTFFAAPNSYTGEDVIEIAAHGSPVVLEWIVRRACTL-GARPAHAGEFTERAFFRGRI 125 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL +AE++ DLI ++T Q R++ E + G L+ + L + + +EA +DF+E+ D Sbjct: 126 DLTQAEAVRDLIDAQTIEQARVAAEQVGGSLAKRIRPCKEDLVALIALLEAGIDFAED-D 184 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 + S ++ + + + + ++ G I+R G +I ++G NAGKSSLFNALA+++ Sbjct: 185 IDVAPSAQIEARLQAVLSPLEDLLATFAYGRILREGVRIAVIGRPNAGKSSLFNALAERE 244 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303 AIVT I GTTRDV+T + + G V++ DTAG+RE++D VE+ GI R+ + ADL+L Sbjct: 245 RAIVTPIAGTTRDVVTERVSIGGIPVELMDTAGLRESEDFVEQLGIARSREALAEADLVL 304 Query: 304 LLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL-ISSFTGEGLEELIN 356 + ++ ++ I+ + + + K DL ++ + S+ TGEGL+ L Sbjct: 305 FIVDLQHGISEEERETIASLEGRPHLVVANKIDLAPLLASDFALIPTSANTGEGLDRLRE 364 Query: 357 KIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM------ASLNEKDCGLDIIAENLR 410 + L + ++ R +++ V L AS+ + LDI E LR Sbjct: 365 ALLQQLRGSQNASASGLLTNLRQRDAVARAVEALHRAIEAIHASIPHEMLLLDIY-EALR 423 Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L ++TG +++L +IFS FCIGK Sbjct: 424 ----GLDELTGSTTADEILGVIFSTFCIGK 449 >gi|290968160|ref|ZP_06559705.1| tRNA modification GTPase TrmE [Megasphaera genomosp. type_1 str. 28L] gi|290781835|gb|EFD94418.1| tRNA modification GTPase TrmE [Megasphaera genomosp. type_1 str. 28L] Length = 459 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 151/462 (32%), Positives = 247/462 (53%), Gaps = 25/462 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRY--FF 54 M ETI A+ T S + IIR+SG F V + + + P R S++Y Sbjct: 1 MCSTNETIAAIVTPPGESGVGIIRISGDQAFSVGDVLFRSVSAVPLAQRRDKSVQYGHIT 60 Query: 55 GLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114 +G ++D+ L+++ P S+T ED E HGGI V+ IL L +RLA PGEF+ Sbjct: 61 ERNGAVIDEVLVLIMKGPHSYTAEDVLEIQCHGGIKVIQKILT-LVLEQGVRLARPGEFT 119 Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174 RAF NG+IDL +AE++ D+I +++E ++ + G+LS + + LT + +E Sbjct: 120 ERAFVNGRIDLAQAEAVMDIIQAKSEAGVTRAVRQLEGKLSEVVNDMLQNLTTFITRLEV 179 Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234 +D+ EE D++ ++ + +++ + + + + G++IR+G +VI G NAGKSS Sbjct: 180 TVDYPEE-DLEEIEVPDIAGSLQEMRDALEHMLGRARTGKMIRDGITVVINGLPNAGKSS 238 Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294 L N L ++D AIVT++PGTTRDV+ + L G + DTAGIR+TDD VE+ G+ + Sbjct: 239 LLNRLLEEDKAIVTEVPGTTRDVIEAWITLSGIPFCLVDTAGIRKTDDKVERIGVAKARS 298 Query: 295 EVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTY----TEEYDHLI- 343 ++ AD+ILL+ + + K + + K+ I KSD+ S E Y + Sbjct: 299 YMDTADIILLVLDGSHKLQEEEKALLQEIKDKTAWVILNKSDISSLMDKKEIEAYGIPVL 358 Query: 344 --SSFTGEGLEELINK-IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC 400 S+ TG+G+E L ++ +LS + + ++ RH+ Q ++ A L+ Sbjct: 359 SLSARTGKGIEALQKTLLRYVLSKGWDTGADVLLANVRHIEAARQAKAAMDRA-LHTLQA 417 Query: 401 GL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 GL D+ ++R A LG ITG ++ IFS+FC+GK Sbjct: 418 GLPIDLAIIDIREAWEMLGDITGQHVRADIVKEIFSRFCLGK 459 >gi|260588823|ref|ZP_05854736.1| tRNA modification GTPase TrmE [Blautia hansenii DSM 20583] gi|331083514|ref|ZP_08332626.1| tRNA modification GTPase mnmE [Lachnospiraceae bacterium 6_1_63FAA] gi|260540602|gb|EEX21171.1| tRNA modification GTPase TrmE [Blautia hansenii DSM 20583] gi|330404207|gb|EGG83755.1| tRNA modification GTPase mnmE [Lachnospiraceae bacterium 6_1_63FAA] Length = 457 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 157/459 (34%), Positives = 246/459 (53%), Gaps = 28/459 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPR-----KASLRYFFGLD-GR 59 +TI AV+T S I IIR+SGP ++ I + K R +++Y F D Sbjct: 3 DTIAAVATAMTASGIGIIRISGPKSREIAGKIYRSKGGKKRIENVPSHTIQYGFICDEDE 62 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 I+D+ L++V +P S+TGE++ E HGG+ + +LE + K R A PGEF++RAF Sbjct: 63 IIDEVLVMVMDAPRSYTGENTVEIDCHGGVLAMKRVLETVVKY-GARPAEPGEFTKRAFL 121 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NG+IDL +AE++ D+I+++ E + S+ + G + + + + + ++IE+ LD Sbjct: 122 NGRIDLSQAEAVIDVINAKNEYALKSSISQLRGNIQRVIKEIRQGIIYQIAYIESALDDP 181 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 E + + + +I LK ++ + + G++++ G K VI+G NAGKSSL N L Sbjct: 182 EHISIDGYGDT-LKGEISLLKEKLNGLLDTVREGKLMKEGIKTVIVGKPNAGKSSLLNLL 240 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 ++ AIVTDI GTTRD+L + L G +++ DTAGIR+TDD+VEK G+K+ ++A Sbjct: 241 VGEERAIVTDIAGTTRDILEETIVLHGISLRMIDTAGIRDTDDVVEKIGVKKAVENAKDA 300 Query: 300 DLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEE-----YDHLISSFTG 348 DLIL + + N K+ I K+ I I K DL TEE +H + + + Sbjct: 301 DLILYVVDSSVPLDENDKEIIELLKDKKAIVILNKMDLQQQVTEEDLKEKTNHPVVAVSA 360 Query: 349 ---EGLEELINKIKSILSNKFKKLPFS---IPSHKRHLYHLSQTVRYLEMASLN-EKDCG 401 EG+E L KIK + L F+ ++ RH + R LE+ + E Sbjct: 361 KEEEGIEFLEAKIKEMFFE--GNLSFNDEIYITNMRHKAAIEDAKRSLELVENSIEMQMP 418 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D + +L A +LG I G E L++ IFSKFC GK Sbjct: 419 EDFFSIDLMNAYEALGSIIGESVGEDLVNEIFSKFCTGK 457 >gi|56965874|ref|YP_177608.1| tRNA modification GTPase TrmE [Bacillus clausii KSM-K16] gi|81821939|sp|Q5WAG3|MNME_BACSK RecName: Full=tRNA modification GTPase mnmE gi|56912120|dbj|BAD66648.1| tRNA modification GTPase [Bacillus clausii KSM-K16] Length = 458 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 151/463 (32%), Positives = 249/463 (53%), Gaps = 32/463 (6%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LDG--- 58 E +TI A+ST AI I+RLSG + + + K K S +G +D Sbjct: 2 EMDTIAAISTALGEGAIGIVRLSGDQAIAIGDKLFKGTKRLEDTPSHTIVYGHLMDDASE 61 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEE-LAKMPNLRLANPGEFSRRA 117 +++ ++ V +P ++T ED E + HGG+ VN +L+ LAK RLA PGEF++RA Sbjct: 62 EAIEEAMVTVMRAPRTYTREDIVEINCHGGLVSVNRVLQAVLAK--GARLAEPGEFTKRA 119 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NG+IDL +AE + DLI S+T+ +++ + G LS G+ L + IE ++D Sbjct: 120 FLNGRIDLSQAEGVIDLIRSKTDRAMNVALRQVEGRLSKKIGKLRQALLETIASIEVNID 179 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 + E D + ++K + + + +I + ++ K G+++R G I+G N GKSSL N Sbjct: 180 YPEY-DAETMTAKLINEKMTIVLAEIEALLATAKQGKVLREGLATAIIGRPNVGKSSLMN 238 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 +L + AIVTDIPGTTRD L +++ G +++ DTAGIRET+DIVE+ G++R+ ++ Sbjct: 239 SLVHEAKAIVTDIPGTTRDTLEEYVNVRGVPLRLIDTAGIRETEDIVERIGVERSRQALK 298 Query: 298 NADLILLL----KEINSKKEISFP--KNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEG- 350 ADLILL+ ++++ + E F K +D + I K D E + GE Sbjct: 299 EADLILLVLNYAEKLSKEDEALFEAVKGLDVVVIVNKIDQTGRIDMER---VRQLAGENP 355 Query: 351 -------LEELINKIKSILSNKF-----KKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNE 397 EE +++++ +S F + + S+ RH+ L+Q + E A + + Sbjct: 356 VVATSFLQEEGVDQLEEAISRLFFAGGVEGADLTYVSNARHIGLLNQAKAHAEEAIAASL 415 Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D +D+I ++ LG+I G + L+D +FS+FC+GK Sbjct: 416 TDVPVDLIQIDVTRTWELLGEIIGEDVQDSLIDQLFSQFCLGK 458 >gi|13357574|ref|NP_077848.1| tRNA modification GTPase TrmE [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|167971146|ref|ZP_02553423.1| tRNA modification GTPase TrmE [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|168308181|ref|ZP_02690856.1| tRNA modification GTPase TrmE [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|170762183|ref|YP_001752098.1| tRNA modification GTPase TrmE [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|14195294|sp|Q9PRC7|MNME_UREPA RecName: Full=tRNA modification GTPase mnmE gi|189036215|sp|B1AI04|MNME_UREP2 RecName: Full=tRNA modification GTPase mnmE gi|11279575|pir||F82944 GTP-binding protein in thiophene and furan oxidation UU018 [imported] - Ureaplasma urealyticum gi|6898963|gb|AAF30423.1|AE002101_6 GTP-binding protein in thiophene and furan oxidation [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827760|gb|ACA33022.1| tRNA modification GTPase TrmE [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171902496|gb|EDT48785.1| tRNA modification GTPase TrmE [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|186701160|gb|EDU19442.1| tRNA modification GTPase TrmE [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 438 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 144/442 (32%), Positives = 236/442 (53%), Gaps = 14/442 (3%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRILDK 63 TI A++T + AI IIR+SGP F++ I K +K + + ++ + D +ILD+ Sbjct: 3 TIVALATAPMNCAIHIIRVSGPKAFEIINKISTIK---IKKETFKIWYTILKDDNQILDE 59 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 L+ F +P++FTGED E + HGGI V N I++ L K + A GEFSRRA N K+ Sbjct: 60 VLINTFVAPKTFTGEDLVEINCHGGIVVANLIIKTLIKY-GCQPAQRGEFSRRALLNKKM 118 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL + E++ +L++++ E+ + + + G +S ++ +L I IE ++D+ E +D Sbjct: 119 DLSKIEAINNLVNAKNELSVKGVIGALLGRVSQSIAEFRHELFMIIGQIEVNIDYPEYDD 178 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 V+ + + +L L I+ I Q K I G +++I+G N GKS+L NAL + Sbjct: 179 VEQVDAIILKQRLLSLDKKITKIIDQSKKFLPINKGIRVLIIGKPNVGKSTLLNALCNEQ 238 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303 AIVTDIPGTTRDV+ ++++ + I DTAGI T+D VE GI + ++ DLIL Sbjct: 239 KAIVTDIPGTTRDVIESSINIDNITLNILDTAGIHLTNDFVENLGINKAKALIDKVDLIL 298 Query: 304 LLKEINSKKEI---SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKS 360 L N ++++ K + + TK DL Y ++ ++ + ++ LI++IK Sbjct: 299 YLIPANEQQDLELYDLIKKQKHLLVYTKKDLVDQYDDKQIYI--NAKNNDIQSLIDEIKK 356 Query: 361 IL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAENLRLASVSLGK 418 + +F + +R + L + A LN EK LD+I +L ++ L + Sbjct: 357 LFYVQEFDNANIDVLQSQRQIGILENVHYLINNAILNLEKGDTLDLIVADLEFCNLRLNE 416 Query: 419 ITGCVDVEQLLDIIFSKFCIGK 440 + G LD +F FCIGK Sbjct: 417 LLGISSEYDFLDDLFKNFCIGK 438 >gi|224538904|ref|ZP_03679443.1| hypothetical protein BACCELL_03800 [Bacteroides cellulosilyticus DSM 14838] gi|224519482|gb|EEF88587.1| hypothetical protein BACCELL_03800 [Bacteroides cellulosilyticus DSM 14838] Length = 466 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 157/467 (33%), Positives = 244/467 (52%), Gaps = 35/467 (7%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYF---FG--LDGR 59 ++TI A++T A AI IR+SG ++ I K A + + FG DG Sbjct: 4 QDTICAIAT-AQGGAIGSIRVSGADAIRITSHIFTPAKSGKTLADCKPYTLTFGKIHDGE 62 Query: 60 -ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 I+D+ L+ +F +P S+TGEDS E HG ++ +L+ L K RLA PGE+++RAF Sbjct: 63 EIIDEVLVSLFRAPHSYTGEDSTEITCHGSSYILQQVLQLLIK-HGCRLAGPGEYTQRAF 121 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NGK+DL +AE++ADLI+S + RL+M M G S + ++L H S IE +LDF Sbjct: 122 LNGKMDLSQAEAVADLIASSSAATHRLAMSQMRGGFSKELTKLRNQLLHFTSLIELELDF 181 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 S+ E+++ E+ ++ IS + +G I+NG + I+G +NAGKS+L N Sbjct: 182 SDHEELEFADRTELCRLADHIEGVISQLVHSFSVGNAIKNGVPVAIIGETNAGKSTLLNV 241 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L +D AIV+DI GTTRDV+ ++ G + DTAGIRET+D +E GI+RTF ++E Sbjct: 242 LLNEDKAIVSDIHGTTRDVIEDTTNIGGITFRFIDTAGIRETNDTIESLGIERTFQKLEQ 301 Query: 299 ADLILLL-------KEINSKKEISFPK--NIDFIFIGTKSDLYST-YTEEYDHLISSFTG 348 A+++L + ++N P+ I + K+DL T ++ E SS Sbjct: 302 AEIVLWMIDATDATSQMNQLSGQILPRLERKHLILVFNKADLLGTAHSGEVLSAASSIIP 361 Query: 349 EGLEELINKIKSILSNKFKK-------LPF-----SIPSHKRH---LYHLSQTVRYLEMA 393 + I+ K ++ +K LP I ++ RH L H + +R ++ Sbjct: 362 DAECIFISAKKRQNTDVLQKKLIAAANLPTITQNDVIVTNARHYEALTHALEAIRRVQQG 421 Query: 394 SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 N + D +A+++R L I G V + +L IF FCIGK Sbjct: 422 LAN--NLSGDFVAQDIRECIFHLSDIAGEVTNDMVLQNIFQHFCIGK 466 >gi|228477467|ref|ZP_04062103.1| tRNA modification GTPase TrmE [Streptococcus salivarius SK126] gi|228250902|gb|EEK10090.1| tRNA modification GTPase TrmE [Streptococcus salivarius SK126] Length = 456 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 145/458 (31%), Positives = 252/458 (55%), Gaps = 22/458 (4%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---D 57 + E +TI A+ST AI I+RLSG + + K K AS +G + Sbjct: 3 ITKEFDTITAISTPLGEGAIGIVRLSGTDAVAIANKVFKGKN-LETVASHTINYGHIVEN 61 Query: 58 GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 +D+ ++ V +P++FT ED E + HGG+AV N IL+ L + R+A PGEF++RA Sbjct: 62 DETIDEVMVSVMRAPKTFTREDVVEINTHGGVAVTNEILQLLIR-SGARMAEPGEFTKRA 120 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NG++DL +AE++ DLI ++T+ +++ + G L L ++ + + +E ++D Sbjct: 121 FLNGRVDLTQAEAVMDLIRAKTDKAMAVAVSQLDGSLKDLINNTRQEILNTLAQVEVNID 180 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 + E +DV+ ++ V + + + ++ K G+I+R G I+G N GKSSL N Sbjct: 181 YPEYDDVEEVTTNLVREKTQEFQALLENLLATAKRGKILREGLSTAIIGRPNVGKSSLLN 240 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 L +++ AIVTDI GTTRDV+ ++++G +K+ DTAGIR+TDD+VEK G++R+ +E Sbjct: 241 NLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRDTDDVVEKIGVERSKKALE 300 Query: 298 NADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDL-YSTYTEEYDH---LISS 345 ADL+LL+ +NS + ++ KN + I + K+DL + EE IS Sbjct: 301 EADLVLLV--LNSSEPLTEQDRTLLEISKNSNRIILLNKTDLPQAIQMEELPEDVIPISV 358 Query: 346 FTGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGL 402 E ++++ ++I + + + + S+ RH+ + + + LE E + Sbjct: 359 LKNENIDKIEDRINQLFFDNAGLVEKDATYLSNARHISLIEKALESLEAVKQGLELGMPV 418 Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D++ ++ LG+ITG ++L+ +FS+FC+GK Sbjct: 419 DLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 456 >gi|161760545|ref|NP_907463.2| tRNA modification GTPase TrmE [Wolinella succinogenes DSM 1740] gi|205829217|sp|Q7M901|MNME_WOLSU RecName: Full=tRNA modification GTPase mnmE Length = 456 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 142/449 (31%), Positives = 238/449 (53%), Gaps = 17/449 (3%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 ETI A+ST + A+++++LSG ++ + ++ PR A+L + + ++D+ + Sbjct: 11 ETIIALSTPSGAGALAVVKLSGSRALEIALKLSRRDHLQPRHATLANLWNREDEMMDEAI 70 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 LI F +P S+T E+ E HGG + I++E A R+A GEF+ RAF NG+IDL Sbjct: 71 LIYFKAPHSYTAEEVVEIQCHGGTLIARKIIQE-ALALGARVARAGEFTYRAFLNGRIDL 129 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ LI ++++ ++ ++ + GEL L I ++ E +D++EE+ Sbjct: 130 SQAEAIGKLIEAKSDESYKVLLKQLKGELGRYVEGVRGSLVEILAYAEVSIDYAEEDLPS 189 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 + ++ ++ I + D+ K + GYK+ I+G N GKSSL NAL + A Sbjct: 190 DLEAR-MVEKIERIAEDLERIYQGSKRRSSLVEGYKLAIIGRPNVGKSSLLNALLLWERA 248 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IV+DIPGTTRD + L L + V+I DTAGIRE D +EK GI+RT L ++ +D++L L Sbjct: 249 IVSDIPGTTRDTIEESLHLGNHWVRIVDTAGIREAQDAIEKIGIERTLLALKESDMVLAL 308 Query: 306 --------KEINSKKEI--SFPKNIDFIFIGTKSD----LYSTYTEEYDHLISSFTGEGL 351 E KE+ + +N + + KSD L + E Y H S G+ Sbjct: 309 FDSSQSLSPEDEQIKELLRAHQENRRILVLFNKSDLSRELQDSELESYPHRYISAKEGGV 368 Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411 EEL++ + S L + + S +R L + + L+ A + L++ A +++ Sbjct: 369 EELLSLLASWLDEQGGGEELMLTS-ERQLLCVKSALGELKEARDRLIEGELELFAYHIQG 427 Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A L IT + +LLD++F +FC+GK Sbjct: 428 ALKELSLITRPYETSELLDVMFGQFCLGK 456 >gi|238809998|dbj|BAH69788.1| hypothetical protein [Mycoplasma fermentans PG18] Length = 450 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 148/446 (33%), Positives = 254/446 (56%), Gaps = 13/446 (2%) Query: 6 ETIFAVSTGA-LPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR-ILDK 63 +TI A+S+G + AISIIR+SG ++ I K K + + + F + I+D+ Sbjct: 7 DTIAAISSGGKINQAISIIRVSGQDSIEIVSKIFKGKIGTNQTITYGHIFDNKTKEIIDE 66 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 L+ F ++FTGE++ E + HGG+ V N ILE L R+A PGEFSRR+F NGK+ Sbjct: 67 VLIAWFIGNKNFTGENTVEINCHGGVLVTNRILE-LLLANGARMALPGEFSRRSFLNGKM 125 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL++AE++ DLI ++T Q L+++ G+ S++ +ID+L ++ +E ++D+ E ED Sbjct: 126 DLIKAEAINDLIHAKTLKQSELAIKKFDGKTSNMIKSFIDELAYLIGQMEINIDYPEYED 185 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 +N +K++++ + L++ +S I + + +I +G K+ ILG N GKSS+ N L +D Sbjct: 186 FENVLTKDLISRLQKLQDKLSLIIKESENSRLIFDGIKVAILGKPNVGKSSILNCLINED 245 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303 AIVTD GTTRD++ ++G L K+ DTAGIR+T+ +EK GI+++F ++E D+++ Sbjct: 246 KAIVTDQAGTTRDLVEASYQIDGLLFKLVDTAGIRKTNRKIEKIGIEKSFEQIEKCDVVI 305 Query: 304 LLKEINS------KKEISFPK--NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELI 355 + E N+ KK K N I + K DL ++ + + S + +++L Sbjct: 306 HVNEANTLENDYDKKVEKLAKQFNKPLIKVINKVDLLKNNKKKKNVIYVSAKNKNIDDLK 365 Query: 356 NKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASV 414 + +I S N+ + + + + L + + + S+N +D++ ++R A Sbjct: 366 EALVNIFSKNEINNEEYVVNARQLALVKKAHSSISDAIESINN-GIDVDVVIIDVRQAWA 424 Query: 415 SLGKITGCVDVEQLLDIIFSKFCIGK 440 L I+G D E LLD +F FC+GK Sbjct: 425 DLVDISGRADNELLLDEMFKNFCLGK 450 >gi|168282034|ref|ZP_02689701.1| tRNA modification GTPase TrmE [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|182675871|gb|EDT87776.1| tRNA modification GTPase TrmE [Ureaplasma parvum serovar 14 str. ATCC 33697] Length = 438 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 144/442 (32%), Positives = 236/442 (53%), Gaps = 14/442 (3%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRILDK 63 TI A++T + AI IIR+SGP F++ I K +K + + ++ + D +ILD+ Sbjct: 3 TIVALATAPMNCAIHIIRVSGPKAFEIINKISTIK---IKKETFKIWYTILKDDNQILDE 59 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 L+ F +P++FTGED E + HGGI V N I++ L K + A GEFSRRA N K+ Sbjct: 60 VLINTFVAPKTFTGEDLVEINCHGGIVVANLIIKTLIKY-GCQPAQRGEFSRRALLNKKM 118 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL + E++ +L++++ E+ + + + G +S ++ +L I IE ++D+ E +D Sbjct: 119 DLSKIEAINNLVNAKNELSVKGVIGALLGRVSQSIAEFKHELFMIIGQIEVNIDYPEYDD 178 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 V+ + + +L L I+ I Q K I G +++I+G N GKS+L NAL + Sbjct: 179 VEQVDAIILKQRLLSLDKKITKIIDQSKKFLPINKGIRVLIIGKPNVGKSTLLNALCSEQ 238 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303 AIVTDIPGTTRDV+ ++++ + I DTAGI T+D VE GI + ++ DLIL Sbjct: 239 KAIVTDIPGTTRDVIESSINIDNITLNILDTAGIHLTNDFVENLGINKAKALIDKVDLIL 298 Query: 304 LLKEINSKKEI---SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKS 360 L N ++++ K + + TK DL Y ++ ++ + ++ LI++IK Sbjct: 299 YLIPANEQQDLELYDLIKKQKHLLVYTKKDLVDQYDDKQIYI--NAKNNDIQSLIDEIKK 356 Query: 361 IL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAENLRLASVSLGK 418 + +F + +R + L + A LN EK LD+I +L ++ L + Sbjct: 357 LFYVQEFDNANIDVLQSQRQIGILENVHYLINNAILNLEKGDTLDLIVADLEFCNLRLNE 416 Query: 419 ITGCVDVEQLLDIIFSKFCIGK 440 + G LD +F FCIGK Sbjct: 417 LLGISSEYDFLDDLFKNFCIGK 438 >gi|308190244|ref|YP_003923175.1| thiophene and furan oxidation protein [Mycoplasma fermentans JER] gi|319777612|ref|YP_004137263.1| tRNA modification gtpase mnme [Mycoplasma fermentans M64] gi|307624986|gb|ADN69291.1| thiophene and furan oxidation protein [Mycoplasma fermentans JER] gi|318038687|gb|ADV34886.1| tRNA modification GTPase mnmE [Mycoplasma fermentans M64] Length = 447 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 148/446 (33%), Positives = 254/446 (56%), Gaps = 13/446 (2%) Query: 6 ETIFAVSTGA-LPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR-ILDK 63 +TI A+S+G + AISIIR+SG ++ I K K + + + F + I+D+ Sbjct: 4 DTIAAISSGGKINQAISIIRVSGQDSIEIVSKIFKGKIGTNQTITYGHIFDNKTKEIIDE 63 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 L+ F ++FTGE++ E + HGG+ V N ILE L R+A PGEFSRR+F NGK+ Sbjct: 64 VLIAWFIGNKNFTGENTVEINCHGGVLVTNRILE-LLLANGARMALPGEFSRRSFLNGKM 122 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL++AE++ DLI ++T Q L+++ G+ S++ +ID+L ++ +E ++D+ E ED Sbjct: 123 DLIKAEAINDLIHAKTLKQSELAIKKFDGKTSNMIKSFIDELAYLIGQMEINIDYPEYED 182 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 +N +K++++ + L++ +S I + + +I +G K+ ILG N GKSS+ N L +D Sbjct: 183 FENVLTKDLISRLQKLQDKLSLIIKESENSRLIFDGIKVAILGKPNVGKSSILNCLINED 242 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303 AIVTD GTTRD++ ++G L K+ DTAGIR+T+ +EK GI+++F ++E D+++ Sbjct: 243 KAIVTDQAGTTRDLVEASYQIDGLLFKLVDTAGIRKTNRKIEKIGIEKSFEQIEKCDVVI 302 Query: 304 LLKEINS------KKEISFPK--NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELI 355 + E N+ KK K N I + K DL ++ + + S + +++L Sbjct: 303 HVNEANTLENDYDKKVEKLAKQFNKPLIKVINKVDLLKNNKKKKNVIYVSAKNKNIDDLK 362 Query: 356 NKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASV 414 + +I S N+ + + + + L + + + S+N +D++ ++R A Sbjct: 363 EALVNIFSKNEINNEEYVVNARQLALVKKAHSSISDAIESINN-GIDVDVVIIDVRQAWA 421 Query: 415 SLGKITGCVDVEQLLDIIFSKFCIGK 440 L I+G D E LLD +F FC+GK Sbjct: 422 DLVDISGRADNELLLDEMFKNFCLGK 447 >gi|229829511|ref|ZP_04455580.1| hypothetical protein GCWU000342_01603 [Shuttleworthia satelles DSM 14600] gi|229791942|gb|EEP28056.1| hypothetical protein GCWU000342_01603 [Shuttleworthia satelles DSM 14600] Length = 482 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 161/483 (33%), Positives = 251/483 (51%), Gaps = 49/483 (10%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL------- 56 + +TI AV+T + I IIR+SGP + + + + KK S +G Sbjct: 3 QGDTIAAVATAMSNAGIGIIRISGPDAIAIADSVFRGKKALAEMESHTISYGHIVEDKGK 62 Query: 57 ------------DGRI--LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKM 102 G++ +D+ L+ VF +P ++T ED E + HGGI ++ IL L Sbjct: 63 TGGISEGEGTKDTGQVCLIDEVLVSVFRAPRTYTREDLVEINCHGGILILQKILRLLFSC 122 Query: 103 PNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWI 162 R A PGEF++RAF NG+ID+ +AES+ DLI +++E+ R SME +SG LS Sbjct: 123 -GARPAEPGEFTKRAFLNGRIDMAQAESVMDLIHAQSELAIRNSMEQLSGALSCRIRDMR 181 Query: 163 DKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI 222 +KL + +FIE+ LD E D+ +S K + N + L + ++ K G +R+G Sbjct: 182 EKLLYEIAFIESALDDPEHYDLDGYSDK-LRNQVENLSAALERLLASSKEGSYLRDGILT 240 Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282 I+G NAGKSSL NALA +D AIVTDIPGTTRD L + L +++ DTAGIRE++D Sbjct: 241 AIVGRPNAGKSSLLNALAGRDRAIVTDIPGTTRDTLEERVRLGNLALRLIDTAGIRESED 300 Query: 283 IVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNID----------FIFIGTKSDLY 332 +E+ G+++ +E ADLI+ + + + E K ++ I + K DL Sbjct: 301 RIEQIGVEKARKSMEEADLIIFVMDASLPLENEDCKMLNQLSSHGYLEHSIILLNKMDLT 360 Query: 333 STYTEEY----------DHL--ISSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRH 379 S + E D + +S+ EGL+ L + I+ + + + ++ + ++ RH Sbjct: 361 SILSAEQIQQVLPQLNPDRILSVSARREEGLDLLASAIERMFFTGQVRENQEILITNARH 420 Query: 380 LYHLSQTVRYLEMASLNEKDCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFC 437 Y L + + L++ L D G+ D + +L LG ITG + L D IFSKFC Sbjct: 421 TYALQEARKALDLV-LEGIDQGITEDFLTVDLMNCYEQLGLITGETLEDDLADEIFSKFC 479 Query: 438 IGK 440 +GK Sbjct: 480 MGK 482 >gi|323465554|gb|ADX77707.1| tRNA modification GTPase TrmE [Staphylococcus pseudintermedius ED99] Length = 460 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 151/463 (32%), Positives = 250/463 (53%), Gaps = 35/463 (7%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK---KPFPRKASLRYFFGLDGRILD 62 +TI ++ST AI I+RLSG ++ + + K K K P ++ Y G I+D Sbjct: 5 DTITSISTPMGEGAIGIVRLSGHDAVEIADKLYKGKHLLKDVPTH-TINY-----GHIID 58 Query: 63 --------KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114 + ++ V +P +FT ED E + HGGI +N +LE L R+A PGE++ Sbjct: 59 PETEEVVEEVMVSVLRAPRTFTREDIVEINCHGGILTINRVLE-LTMTYGARMAEPGEYT 117 Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174 +RAF NG+IDL +AE++ D I S+T+ +++M + G LS L + + I + +E Sbjct: 118 KRAFLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKRQRQSILEILAQVEV 177 Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234 ++D+ E +DV++ +++ +L +K +I + G G+I+R G VI+G N GKSS Sbjct: 178 NIDYPEYDDVEDATTEFLLERSQEIKLEIQKLLDTGVQGKIMREGLSTVIVGKPNVGKSS 237 Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294 + N L + + AIVT++ GTTRDVL +++ G +++ DTAGIRET+DIVE+ G++R+ Sbjct: 238 MLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRETEDIVERIGVERSRK 297 Query: 295 EVENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYT-EEYDHLI---- 343 + ADLIL + N +K KN D I I K+DL E + ++ Sbjct: 298 ALSEADLILFVLNYNEPLTEDDRKLYEVIKNEDAIVIINKTDLEQRLDLAEVETMVGDMP 357 Query: 344 ----SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNE 397 S +G++EL +I+ + + + + S+ RH+ L Q ++ A E Sbjct: 358 IIQTSMLQQQGIDELEIQIRDLFFGGEVQSQDMTYVSNSRHISLLKQAKNAIQDAIDAAE 417 Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+I G E+L+D +FS+FC+GK Sbjct: 418 MGVPMDMVQIDLTRTWEILGEIIGESASEELIDQLFSQFCLGK 460 >gi|312144699|ref|YP_003996145.1| tRNA modification GTPase TrmE [Halanaerobium sp. 'sapolanicus'] gi|311905350|gb|ADQ15791.1| tRNA modification GTPase TrmE [Halanaerobium sp. 'sapolanicus'] Length = 464 Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 155/466 (33%), Positives = 253/466 (54%), Gaps = 37/466 (7%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK-----KKKPFPRKASLRYFFGLDG- 58 ++TI A++T IR+SGP +++ + I + KK + Y F D Sbjct: 6 EDTIAAIATPFGTGGTGKIRISGPEAYEIGDKIFRSVQEGKKIKDAETYTAHYGFIYDPV 65 Query: 59 --RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 + +D+ + I+ P SFTGE+ EF HGG+ + +LE L RLA PGEFS+R Sbjct: 66 EEKKIDEVVAIMMRKPRSFTGENVLEFDCHGGMTPLRAVLE-LVLASGARLAEPGEFSQR 124 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NG+IDL +AE++ D+I+S+TE +++E +SG+LS + + + + +EA + Sbjct: 125 AFLNGRIDLAQAEAIIDIINSKTEKSLDIAVEQLSGKLSQRVDEIKEIAVEVLAHLEAAI 184 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D+ E+E ++ FS +++ + ++K +I + + G+I + G K VI+G N GKSSL Sbjct: 185 DYPEDE-IEGFSPEKLDDKFNYIKEEIEKLLLSSRQGKIYKEGLKTVIVGKPNVGKSSLL 243 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N ++ AIVTDIPGTTRDV+ ++L+G +KI DTAGIRET D VEK G++RT Sbjct: 244 NYFLEEKRAIVTDIPGTTRDVIEEYVNLKGIPLKIIDTAGIRETADKVEKIGVERTRKSA 303 Query: 297 ENADLILLLKEIN---SKKEISFPKNID---FIFIGTKSDLYSTYTEEYDHLISSFTGEG 350 E ADL+L + +I+ +++++ K I I I K+DL + E+ D + F Sbjct: 304 EKADLVLFMLDISQGLTEEDLQIYKLIKDKPVIVIVNKTDLPA--QEDRDKIEQEFKEHN 361 Query: 351 L---------------EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL 395 L ++++N+ IL + I + RH L + + +E + Sbjct: 362 LLWISLLEEKGLEELRQKILNE---ILDEELSGDDNVIITKSRHKNALLKAKKAVERVIV 418 Query: 396 N-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + E D + +L+ +LG+ITG + ++D IFS FC+GK Sbjct: 419 SRETSMPYDFLTIDLKDCLNALGEITGETVADDIIDRIFSDFCLGK 464 >gi|213962698|ref|ZP_03390959.1| tRNA modification GTPase TrmE [Capnocytophaga sputigena Capno] gi|213954693|gb|EEB66014.1| tRNA modification GTPase TrmE [Capnocytophaga sputigena Capno] Length = 471 Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 154/472 (32%), Positives = 255/472 (54%), Gaps = 42/472 (8%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK--KKPFPRKASLRYFFGL---D 57 + +TI A++T + AI++IRLSG + ++ + I K KK S G+ Sbjct: 8 YNSDTIVALATASGMGAIAVIRLSGANAIEIADQIFKSYSKKSLVDAPSHTVHLGILEAK 67 Query: 58 GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKM---PNLRLANPGEFS 114 +++D+ L +F +S+TGE EF HG N I+EE+ K+ RLA GEF+ Sbjct: 68 NQVIDECLATIFKGTKSYTGEPVVEFSCHGS----NYIVEEVIKLCLANGTRLAEAGEFT 123 Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174 +RAF NGK+ L +AE++ADLI+S+++ +++++ M G +S +L + S IE Sbjct: 124 KRAFLNGKLALNQAEAVADLIASDSKASHQVALQQMRGGFTSEIEALRQELLNFASLIEL 183 Query: 175 DLDFSEEEDVQNFSSKEVLNDIL-FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233 +LDFSEE DV+ F+ + +L +K +SS I +G +++NG + I+G NAGKS Sbjct: 184 ELDFSEE-DVE-FADRSQFKSLLKTIKTTLSSLIQSFSVGNVLKNGIPVAIVGKPNAGKS 241 Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293 +L NAL ++ AIV+DI GTTRD + L + G + DTAGIR+T D +E G+++ Sbjct: 242 TLLNALLNEERAIVSDIAGTTRDTIEETLHIGGIAFRFIDTAGIRDTQDQIEAIGVQKAK 301 Query: 294 LEVENADLILLL--------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY-DHLIS 344 ++E A +IL L EI + + ++ + ++ + K+DL T + D ++ Sbjct: 302 EKIEKASVILFLFDDKDNTVSEITTFVKENYREGTKYVLLHNKTDLSPEETTAFDDEILQ 361 Query: 345 SFTG-----------EGLEELINKIKSILSNKFKKLPF----SIPSHKRHLYHLSQTVRY 389 S G EG + I ++K L++ + L ++ ++ RH LS ++ Sbjct: 362 SLKGYTDTLLRISAKEG--QNITELKRFLADYAQTLSHIGKATVVTNIRHYEALSNALQA 419 Query: 390 LEMASLN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +E + D++A ++R LG ITG V E++L IFS+FCIGK Sbjct: 420 IEKVEEGMQMHLSGDLLAIDIRETLYHLGSITGEVSNEEVLGNIFSRFCIGK 471 >gi|116334862|ref|YP_796389.1| tRNA modification GTPase TrmE [Lactobacillus brevis ATCC 367] gi|122268459|sp|Q03N64|MNME_LACBA RecName: Full=tRNA modification GTPase mnmE gi|116100209|gb|ABJ65358.1| tRNA modification GTPase, TrmE [Lactobacillus brevis ATCC 367] Length = 464 Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 155/479 (32%), Positives = 254/479 (53%), Gaps = 63/479 (13%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD---G 58 E +TI A+ST ISIIRLSG FQV + K + S +G LD G Sbjct: 7 EFDTIAAISTPPGEGGISIIRLSGEEVFQVAAKLFKGAD-LTQVGSHTIHYGHILDPETG 65 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 +D+ ++ V +P+++T ED E + HGGI N IL+ L RLA PGE+++RAF Sbjct: 66 DEVDEVMVTVMRAPKTYTKEDIIEINCHGGIVATNRILQ-LCLSYGARLAEPGEYTKRAF 124 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG+IDL +AES+ DLI ++T+ +++++ + G+LS L + + +E ++D+ Sbjct: 125 LNGRIDLTQAESVMDLIRAKTDKSMKVALDQLDGDLSKLIRNLRQDILDALAQVEVNIDY 184 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E +DV+ ++K +L +K I + ++ K G+++R G I+G N GKSSL N Sbjct: 185 PEYDDVETMTTKMLLEKAHEVKQQIKTLLATAKQGKVLREGLATAIVGRPNVGKSSLLNH 244 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L +D AIVTD+ GTTRDV+ ++++G +K+ DTAGIR+T D VEK G++R+ + Sbjct: 245 LLHEDKAIVTDVAGTTRDVIEEYVNVKGVPLKLIDTAGIRDTTDKVEKIGVERSRKAINT 304 Query: 299 ADLILLL----KEINSKKE--ISFPKNIDFIFIGTKSD---------------------- 330 ADL++L+ + + ++ E ++ K+ I I K+D Sbjct: 305 ADLVMLVLNASEPLTAEDEALLTATKDTQRILILNKTDLPLQLDLAAVRQVAGDSPIIET 364 Query: 331 --LYSTYTEEYDHLISS-FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV 387 L ST ++ + I+ F EG+E N + + ++ RH+ L Q Sbjct: 365 SILQSTGMDQLEETIAHLFFDEGIESSQNTV--------------MVTNARHIGLLHQA- 409 Query: 388 RYLEMASLNEKDCGL------DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A+L++ G+ D++ ++ A LG+ITG ++LLD +FS+FC+GK Sbjct: 410 ----SAALDDVQNGIAAGMPVDLVQIDMTRAWDLLGEITGDSYQDELLDQLFSQFCLGK 464 >gi|319947147|ref|ZP_08021381.1| thiophene and furan oxidation protein ThdF [Streptococcus australis ATCC 700641] gi|319747195|gb|EFV99454.1| thiophene and furan oxidation protein ThdF [Streptococcus australis ATCC 700641] Length = 457 Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 145/459 (31%), Positives = 258/459 (56%), Gaps = 22/459 (4%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLD-- 57 + E +TI A+ST AI I+RLSG F++ + I K K + +L Y +D Sbjct: 2 ITREFDTIAAISTPLGEGAIGIVRLSGTDSFKIAQKIFKGKDLTSVASHTLNYGHIVDPD 61 Query: 58 -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 ILD+ ++ SP++FT ED E + HGGIAV N IL+ L RLA PGEF++R Sbjct: 62 KDEILDEVMVGAMRSPKTFTREDIIEINTHGGIAVTNEILQ-LVIREGARLAEPGEFTKR 120 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NG++DL +AE++ D+I ++T+ ++++ + G LS L ++ + + +E ++ Sbjct: 121 AFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVNI 180 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D+ E +DV+ +++ + + +++ + + G+I+R G I+G N GKSSL Sbjct: 181 DYPEYDDVEEATTEIIREKTTEFEALLTNLLKTARRGKILREGISTAIIGRPNVGKSSLL 240 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N L +++ AIVTDI GTTRDV+ +++ G +K+ DTAGIRET+DIVE+ G++R+ + Sbjct: 241 NNLLREEKAIVTDIEGTTRDVIEEYVNINGVPLKLVDTAGIRETEDIVERIGVERSRKAL 300 Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEE---YDHL-ISSF 346 + ADL+LL+ + ++ + ++ + I + K DL + DH+ IS Sbjct: 301 KEADLVLLVLNASEPLTDQDRQLLEISQDSNRIILLNKVDLPQQIELDEIPADHIKISVL 360 Query: 347 TGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE---KDCG 401 + + ++ ++I ++ + + + S+ RH+ + + V L+ ++NE Sbjct: 361 KNQNINQIEDRINALFFENAGLVEQDATYLSNARHISLIEKAVESLQ--AVNEGLAMGMP 418 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+ITG ++L+ +FS+FC+GK Sbjct: 419 VDLLQVDLTRTWEILGEITGDATPDELITQLFSQFCLGK 457 >gi|163742610|ref|ZP_02149996.1| tRNA modification GTPase [Phaeobacter gallaeciensis 2.10] gi|161384195|gb|EDQ08578.1| tRNA modification GTPase [Phaeobacter gallaeciensis 2.10] Length = 341 Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 136/348 (39%), Positives = 199/348 (57%), Gaps = 9/348 (2%) Query: 95 ILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGEL 154 +L+ L + ++RL++PGEF+RRA ENGK+DL + E+LADLI +ETE QR + ++G L Sbjct: 1 MLDLLGQFEDVRLSDPGEFTRRALENGKLDLSQVEALADLIDAETEAQRVQAQAVLAGGL 60 Query: 155 SSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGE 214 + L +W L S IE +DF++E DV +KEV + + D+ I+ K+ E Sbjct: 61 ADLAERWRKDLIRAASLIEVTIDFADE-DVPVDVTKEVKELLAGVMADLEPQIAGVKMAE 119 Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274 IR+G+++ I+G N GKS+L NALA ++ AI ++ GTTRDV+ + +DL G V + DT Sbjct: 120 RIRSGFEVAIIGAPNVGKSTLLNALAGREAAITSEYAGTTRDVIEVRMDLAGLPVTLLDT 179 Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYST 334 AG+R+TDD VE GIK E ADL + L E + I + D I + K+DL Sbjct: 180 AGLRKTDDHVEGIGIKMAKERAEKADLRVFLTE--DRAAIDIDISEDDIVVAPKADLVGD 237 Query: 335 YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS 394 + +S TG+G++ LI I +L N+ K+ I + RH + L+ A Sbjct: 238 GVPQ--KAVSGKTGQGIDMLITDITKVLRNRAGKV--GIATRARHRETMKTAYDRLQSAQ 293 Query: 395 --LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L D+ AE++R A SL + G V VE LLD IFS FC+GK Sbjct: 294 DVLRYGPEYYDVAAEDMRSAIRSLEMLVGRVGVENLLDEIFSSFCLGK 341 >gi|226315527|ref|YP_002775423.1| tRNA modification GTPase [Brevibacillus brevis NBRC 100599] gi|226098477|dbj|BAH46919.1| probable tRNA modification GTPase [Brevibacillus brevis NBRC 100599] Length = 458 Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 151/460 (32%), Positives = 249/460 (54%), Gaps = 30/460 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DGRI 60 +TI AV+T I++IR+SG +V + I K K+ S +G G Sbjct: 4 DTIAAVATPMGEGGIAVIRVSGTEAIEVVDKIYKGKQRLSTVDSHTIHYGHLYEPNTGER 63 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +++ L+ V +P +FT ED E + HGGI V +LE L RLA PGEF++RAF N Sbjct: 64 VEEVLVSVMKAPRTFTREDVVEVNCHGGIVSVEKVLE-LILDNGARLAEPGEFTKRAFLN 122 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G++DL +AE++ DLI ++T+ ++++ + G+LS L Q L + IE LD+ E Sbjct: 123 GRVDLSQAEAVIDLIRAKTDRAMKVALNQVEGKLSRLIRQLRQNLIEAMAHIEVTLDYPE 182 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 DV+ F+ + L +K +I + + G+I+R G I+G N GKSSL N+L Sbjct: 183 H-DVEEFTQNFLRGKCLEVKGEIQRLLQTAQQGKILREGLSTAIIGRPNVGKSSLLNSLV 241 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 +++ AIVTD+ GTTRDV+ +++ G +++ DTAGIR+T+DIVEK G++++ ++ AD Sbjct: 242 QEEKAIVTDVAGTTRDVIEEYVNVRGVPLRLIDTAGIRDTEDIVEKIGVEKSRQLLQKAD 301 Query: 301 LILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYST---------YTEEYDHLI 343 L+LL+ IN + +S K I I K DL + ++ + Sbjct: 302 LVLLV--INYNEPLSADDYAIFEAAKGFHVIVIVNKFDLPQKVDLEEIKRHFPQQPLIMT 359 Query: 344 SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDC 400 S+ G++ L I I S + ++ + S+ RH+ L Q R ++ + ++E Sbjct: 360 SAREETGIDLLEQAIGEIFFSGRVQQDDLTYVSNARHIQLLRQAERAMDEALGGIDEL-M 418 Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D+I +++ + LG++ G E L+D IFS+FC+GK Sbjct: 419 PVDMIQIDIKKSWELLGEVIGESVGEDLIDQIFSQFCLGK 458 >gi|301064536|ref|ZP_07204932.1| tRNA modification GTPase TrmE [delta proteobacterium NaphS2] gi|300441284|gb|EFK05653.1| tRNA modification GTPase TrmE [delta proteobacterium NaphS2] Length = 461 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 160/471 (33%), Positives = 242/471 (51%), Gaps = 41/471 (8%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---- 56 M ++TI A++T + I IIR+SGP + E I K K P S R + G Sbjct: 1 MPSTEDTIAAIATPVGQAGIGIIRISGPDSLETAEKIFKPKTPHTALKSHRLYMGYVYDP 60 Query: 57 -DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 G+++D+ LL +P S+T ED E + H G ++ IL L + RLA PGEF++ Sbjct: 61 DSGKVIDEVLLSYMAAPNSYTREDVVEINSHSGYTLLFKILTILTGL-GARLARPGEFTQ 119 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG+IDL +AE++ DL+++ +E L+ + + G + + HI + EA Sbjct: 120 RAFLNGRIDLSQAEAVVDLMNARSERGLALAAQQIQGAIKRDMLALRKEAVHILANAEAA 179 Query: 176 LDFSEEEDVQNFSSK--EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233 +DF EE+ F S+ E + L DI + + + +G VI G N+GKS Sbjct: 180 IDFPEEDIEHLFRSEGAETIQKQLIHPIDI---LIKAHAERVWVDGINTVIAGRVNSGKS 236 Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293 SL N L + AIVTDIPGTTRDV+ ++ G ++I DTAGIR+ +D VEK GI Sbjct: 237 SLLNRLLNETKAIVTDIPGTTRDVIEATFNVGGIPIRIMDTAGIRKVNDTVEKMGIDLAL 296 Query: 294 LEVENADLIL---------------LLKEINSKK------EISFPKNIDFIFIGTKSDLY 332 + ADL+L LL++ +KK +I P DF K+D Sbjct: 297 QKTAEADLLLFVIDRSRPINRDDMDLLEQGENKKALVVMNKIDLPPAPDF---AEKADSL 353 Query: 333 STYTEEYDHLISSFTGEGLEELINKIK-SILSNKFKKLPFS--IPSHKRHLYHLSQTVRY 389 S ++ IS+ TGEG++ L IK +ILS+ + S +P+ + L ++ Sbjct: 354 SRFSVLE---ISALTGEGIDHLKEAIKDTILSDNAQTSATSRAVPNLRHRQALLKARDQF 410 Query: 390 LEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L + K+ ++I+A LR LG+ITG +++LD IFS+FC+GK Sbjct: 411 LCASKSARKNIPMEIVAFELRNGLDHLGEITGETIDDEILDSIFSQFCMGK 461 >gi|312862786|ref|ZP_07723026.1| tRNA modification GTPase TrmE [Streptococcus vestibularis F0396] gi|311101646|gb|EFQ59849.1| tRNA modification GTPase TrmE [Streptococcus vestibularis F0396] Length = 456 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 145/458 (31%), Positives = 252/458 (55%), Gaps = 22/458 (4%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---D 57 + E +TI A+ST AI I+RLSG + + K K S +G + Sbjct: 3 ITKEFDTITAISTPLGEGAIGIVRLSGTDAVAIANKVFKGKN-LESVTSHTINYGHIVEN 61 Query: 58 GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 +D+ ++ V SP++FT ED E + HGG+AV N IL+ L + R+A PGEF++RA Sbjct: 62 DETIDEVMVSVMRSPKTFTREDVVEINTHGGVAVTNEILQLLIR-SGARMAEPGEFTKRA 120 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NG++DL +AE++ DLI ++T+ +++ + G L L ++ + + +E ++D Sbjct: 121 FLNGRVDLTQAEAVMDLIRAKTDKAMAVAVSQLDGSLKDLINNTRQEILNTLAQVEVNID 180 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 + E +DV+ ++ V + + + ++ K G+I+R G I+G N GKSSL N Sbjct: 181 YPEYDDVEEVTTALVREKTQDFQALLENLLATAKRGKILREGLSTAIIGRPNVGKSSLLN 240 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 L +++ AIVTDI GTTRDV+ ++++G +K+ DTAGIR+TDD+VEK G++R+ +E Sbjct: 241 NLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRDTDDVVEKIGVERSKKALE 300 Query: 298 NADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDL-YSTYTEEYDH---LISS 345 ADL+LL+ +NS + ++ KN + I + K+DL + EE IS Sbjct: 301 EADLVLLV--LNSSEPLTEQDRTLLEISKNSNRIILLNKTDLPQAIQMEELPEDVIPISV 358 Query: 346 FTGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGL 402 E ++++ ++I + + + + S+ RH+ + + + LE + E + Sbjct: 359 LKNENIDKIEDRINQLFFDNAGLVEKDATYLSNARHISLIERALESLEAVNQGLELGMPV 418 Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D++ ++ LG+ITG ++L+ +FS+FC+GK Sbjct: 419 DLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 456 >gi|42563304|ref|NP_177924.3| tRNA modification GTPase, putative [Arabidopsis thaliana] gi|51536472|gb|AAU05474.1| At1g78010 [Arabidopsis thaliana] gi|52421301|gb|AAU45220.1| At1g78010 [Arabidopsis thaliana] gi|332197936|gb|AEE36057.1| putative tRNA modification GTPase [Arabidopsis thaliana] Length = 560 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 157/473 (33%), Positives = 243/473 (51%), Gaps = 44/473 (9%) Query: 7 TIFAVST--GALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKAS-----------LRYF 53 TI A+ T G P A+ I+RLSGP +V + + K +K S + Y Sbjct: 93 TIVAIVTPIGGPPGAVGIVRLSGPKAVEVARRVFRSAKKTKKKESDSDTWRPKSHFVEYG 152 Query: 54 FGLD--GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPG 111 +D G ++D+ L + +P S+T ED E HG + +L + RLA PG Sbjct: 153 AVVDSNGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRTCVEA-GARLAEPG 211 Query: 112 EFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSF 171 EF+ RAF NG++DL +AE++ LIS+++ ++EG+ G SSL + + + Sbjct: 212 EFTLRAFLNGRLDLSQAENVEKLISAKSSAAADAALEGIQGGFSSLVKSLRAQCIELLTE 271 Query: 172 IEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAG 231 IEA LDF E+++ + V+N I + D+ S + +++++G +I I+G N G Sbjct: 272 IEARLDF--EDEMPPLDIESVINKITSMSQDVESALDTANYDKLLQSGLQIAIVGRPNVG 329 Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR 291 KSSL NA +K + AIVT++ GTTRDV+ ++ + G + + DTAGIRET+DIVEK G++R Sbjct: 330 KSSLLNAWSKSERAIVTEVAGTTRDVVEANVTVRGVPITLLDTAGIRETNDIVEKIGVER 389 Query: 292 TFLEVENADLIL---------------LLKEINSKKEISFPKN-IDFIFIGTKSDLYSTY 335 + + AD+I+ LL++I S K + N ID G+ L Sbjct: 390 SETAAKVADVIIMAVSAVEGWTEEDTELLRKIQSDKPMILVMNKIDCAPPGSCDQLEDQR 449 Query: 336 -TEEYDH---LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391 EE H S+ TG+G+EEL + I IL ++P + Q VR E Sbjct: 450 KKEEVFHKSVFTSAVTGQGIEELEDAILEILG--LDRVPTGGHQWTVNQRQCEQLVRTKE 507 Query: 392 ----MASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + E + +D LR A++SL +I+G E++L IF+KFCIGK Sbjct: 508 ALVRLREAIEDEIPIDFWTIELREAALSLAQISGQDVSEEVLSSIFAKFCIGK 560 >gi|294505869|ref|YP_003569927.1| tRNA modification GTPase trmE [Salinibacter ruber M8] gi|294342197|emb|CBH22975.1| tRNA modification GTPase trmE [Salinibacter ruber M8] Length = 461 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 148/464 (31%), Positives = 248/464 (53%), Gaps = 32/464 (6%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL----DGR 59 + +TI A++T +A++++R SGP+ ++ + C + S G+ G Sbjct: 3 QSDTIAAIATARGRAALAVVRTSGPAAIEIVDR-CFRGDALTDADSHTAHVGVLTDEAGT 61 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 +D+ + VF +P S TGE E HGG L+ L R+A PGEF+ RAF Sbjct: 62 DIDQVVATVFRAPNSATGEHVVEVSCHGGDLAPKMALQSLLDH-GARMAEPGEFTERAFL 120 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NGK+DL +AE++ADLI + + + S+ + G S L G ++L ++ S +E ++DFS Sbjct: 121 NGKMDLAQAEAVADLIDATSTKAHQASLTHLKGRYSDLLGDLREELLNLCSLVELEIDFS 180 Query: 180 EEEDVQNFSSKEVLNDILFLKNDI-SSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 +E DV+ F+ +E L D+L +I + GE +++G ++VI G NAGKS+L NA Sbjct: 181 DE-DVE-FADRERLEDLLDETEEILGDLLDTYPTGEKLKDGVQVVIGGRPNAGKSTLLNA 238 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L D AIV++ PGTTRD + + ++EG L + DTAG+R+T D +E EG++R +E Sbjct: 239 LVGHDRAIVSETPGTTRDEIEAEAEIEGVLFRFVDTAGLRDTADEIEAEGVRRATESIEE 298 Query: 299 ADLILLLKEIN---SKKEISFPK-------NIDFIFIGTKSD---------LYSTYTEEY 339 AD++ L ++ +EI+F + ++ + IG K+D L + + Sbjct: 299 ADVLFYLYDLTVGLDSQEIAFLQDLAADGSDVQPVVIGNKADRAPDLPVATLDGLTSLKL 358 Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFS-IPSHKRHLYHLSQTVRYLEMASLNEK 398 L + + ++ L++ + ++ + S + ++RH HL + ++ A Sbjct: 359 SALKAREDADEVQPLLDHLTDTVAEHLSRAEASPVVMNQRHRQHLRDALDAVQQAR-EAL 417 Query: 399 DCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D G+ D++ +LR A LG ITG + E +LD IFS+FCIGK Sbjct: 418 DAGVSGDMLTLDLRAALQELGAITGEITNEDVLDQIFSRFCIGK 461 >gi|312885532|ref|ZP_07745170.1| tRNA modification GTPase trmE [Mucilaginibacter paludis DSM 18603] gi|311302000|gb|EFQ79031.1| tRNA modification GTPase trmE [Mucilaginibacter paludis DSM 18603] Length = 468 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 161/468 (34%), Positives = 255/468 (54%), Gaps = 44/468 (9%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LDGRI- 60 ++ETI A++T AI IIRLSGP + + K K ++AS FG +DG + Sbjct: 14 KEETIVALATPNGTGAIGIIRLSGPDAIAIANSVFKGKD-LTQQASHTIHFGNIVDGEVV 72 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+ L VF +P+S+T E+ E HG ++ I++ + R A PGEF+ RAF N Sbjct: 73 LDEVLASVFIAPKSYTRENVVEISCHGSAYIIESIIKLFIRQ-GARGAKPGEFTLRAFIN 131 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G++DL +AE++ADLI+S ++ ++++M+ + G S+ Q D+L S IE +LDFSE Sbjct: 132 GQLDLSQAEAVADLIASNSKASQQVAMQQLRGGYSNQLKQLRDQLVTFASLIELELDFSE 191 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQ----GKLGEIIRNGYKIVILGHSNAGKSSLF 236 E DV+ F+++ L ++ DIS I+Q +LG I++G VI G NAGKS+L Sbjct: 192 E-DVE-FANRGQLKQLVV---DISKMINQLIQSFELGNAIKHGVNTVIAGRPNAGKSTLL 246 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 NAL +D AIV+ I GTTRD + L++ G ++ DTAG+RE D +E G+++T ++ Sbjct: 247 NALLNEDRAIVSHIAGTTRDTIEEILNINGINFRLVDTAGLREATDTIEAIGVQKTLEKI 306 Query: 297 ENADLILLL--KEINSKKEISFP------KNIDFIFIGTKSDLYSTYTEEYDHLISSFTG 348 + L+L + E + +++ + + + K DL S L + F Sbjct: 307 SQSALLLYVFDAEAMTGADVALDLENLLHPGVPVVAVANKIDLLSD-----GKLAAGFNL 361 Query: 349 EGLEEL----------INKIKSILSNKFKKLPF----SIPSHKRHLYHLSQTVRYLEMAS 394 EL I+++K ++ N + ++ ++ RHL L +T + L + Sbjct: 362 PAEVELITVSAREKQHIDQLKQVIYNSAVQGKLTGNETLVTNIRHLEALQKTEQAL-VRV 420 Query: 395 LNEKDCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LN D + D +A +++ A LG+ITG V + LLD IFSKFCIGK Sbjct: 421 LNGIDNPITSDFLAMDIKQALHYLGEITGSVTTDDLLDNIFSKFCIGK 468 >gi|306833320|ref|ZP_07466448.1| tRNA modification GTPase TrmE [Streptococcus bovis ATCC 700338] gi|304424517|gb|EFM27655.1| tRNA modification GTPase TrmE [Streptococcus bovis ATCC 700338] Length = 457 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 152/465 (32%), Positives = 261/465 (56%), Gaps = 34/465 (7%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD- 57 + +E +TI A+ST AI I+RLSG + + + K AS +G +D Sbjct: 2 ITNEFDTIAAISTPLGEGAIGIVRLSGTEALAIAQKVYHGKD-LNEVASHTINYGHIVDP 60 Query: 58 --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 +LD+ ++ V +P++FT E+ E + HGG+AV N IL+ L RLA PGEF++ Sbjct: 61 DTDEVLDEVMVSVMLAPKTFTCENVVEINTHGGVAVTNEILQ-LVLRQGARLAEPGEFTK 119 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG++DL +AE++ D+I ++T+ ++++ + G LS L ++ + + +E + Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSQLINDTRQEILNTLAQVEVN 179 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +D+ E +DV+ ++ + + + + + K G+I+R G I+G N GKSSL Sbjct: 180 IDYPEYDDVEEMTTALIREKTQEFQELLENLLRTAKRGKILREGLSTAIIGRPNVGKSSL 239 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N L +++ AIVTDI GTTRDV+ ++++G +K+ DTAGIRETDD+VEK G++R+ Sbjct: 240 LNNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLVDTAGIRETDDVVEKIGVERSKKA 299 Query: 296 VENADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTYTEEYDHL----- 342 +E ADL+LL+ +NS + ++ K+ + I + K+DL E D L Sbjct: 300 LEEADLVLLV--LNSSEPLTDQDRALLELSKDSNRIILLNKTDLPEKI--EADQLPDDVI 355 Query: 343 -ISSFTGEG---LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398 IS + +EE IN++ + +K + S+ RH+ + + V+ L+ ++NE Sbjct: 356 RISVLKNQNIDVIEERINQLFFANAGIVEK-DATYLSNARHISLIEKAVQSLQ--AVNEG 412 Query: 399 -DCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + G+ D++ +L LG+ITG ++L+ +FS+FC+GK Sbjct: 413 LELGMPVDLLQIDLTRCWEILGEITGDAAPDELITKLFSQFCLGK 457 >gi|224541282|ref|ZP_03681821.1| hypothetical protein CATMIT_00442 [Catenibacterium mitsuokai DSM 15897] gi|224525786|gb|EEF94891.1| hypothetical protein CATMIT_00442 [Catenibacterium mitsuokai DSM 15897] Length = 445 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 146/455 (32%), Positives = 250/455 (54%), Gaps = 25/455 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGLDG 58 M + I A++T L +AISIIR+SG C + F K + ++ Y + +DG Sbjct: 1 MTMNDDIICAIATSRLEAAISIIRISGKGCIDFVQSFFTGNLNK---KSQTISYGYIVDG 57 Query: 59 R-ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 +D+ L+ ++ +FTGE+ E + HGG+ + N +L L R+A GEFS+RA Sbjct: 58 EEKVDEVLISIYRGQHTFTGEEMVEINCHGGVFITNKVLS-LCLKKGARMAEHGEFSKRA 116 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NG+IDL +AE+++DLI++ + +L+++G+ G +++ + L I + IE ++D Sbjct: 117 FLNGRIDLSQAEAISDLITANNDQAAKLALKGIQGNITNFIKDLKEDLIKIITQIEVNID 176 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 + E ED++ +++++L + L+ + + + K +I++G VI+G N GKSSL N Sbjct: 177 YPEYEDIEELTAEKLLPGSVSLRKKMDDILDRSKNMHLIKDGISTVIVGKPNVGKSSLLN 236 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 AL ++D AIVTDI GTTRDV+ + L ++ + DTAGIRET+D +E G+K++ ++ Sbjct: 237 ALLEEDKAIVTDIAGTTRDVVEGSIRLNDIVLNMIDTAGIRETEDKIEHMGVKKSLSLID 296 Query: 298 NADLILLLK------EINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGL 351 ADL+L++ E K+ + + ++ I + KSD E H+ S + Sbjct: 297 QADLVLVVLDGSRPIEAEDKELLERTEGLNRIVLINKSDKGCVIDTEGIHI--SAKENHI 354 Query: 352 EELINKIK-----SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDII 405 +ELI IK S ++N + +++R + L + + L +A E D+I Sbjct: 355 DELIQHIKDEFDFSAITNS----QAQVLANQRQVQLLEKASQSLNVAIQAMEDGIPTDLI 410 Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +L + +L +I G E LLD +F +FCIGK Sbjct: 411 VTDLYDSWENLKEILGEQAKEDLLDELFKRFCIGK 445 >gi|83815382|ref|YP_444209.1| tRNA modification GTPase TrmE [Salinibacter ruber DSM 13855] gi|123529876|sp|Q2S6H2|MNME_SALRD RecName: Full=tRNA modification GTPase mnmE gi|83756776|gb|ABC44889.1| tRNA modification GTPase TrmE [Salinibacter ruber DSM 13855] Length = 461 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 148/464 (31%), Positives = 248/464 (53%), Gaps = 32/464 (6%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL----DGR 59 + +TI A++T +A++++R SGP+ ++ + C + S G+ G Sbjct: 3 QSDTIAAIATARGRAALAVVRTSGPAAIEIVDR-CFRGDALTDADSHTAHVGVLTDEAGT 61 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 +D+ + VF +P S TGE E HGG L+ L R+A PGEF+ RAF Sbjct: 62 DIDQVVATVFRAPNSATGEHVVEVSCHGGDLAPKMALQSLLDH-GARMAEPGEFTERAFL 120 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NGK+DL +AE++ADLI + + + S+ + G S L G ++L ++ S +E ++DFS Sbjct: 121 NGKMDLAQAEAVADLIDATSTKAHQASLTHLKGRYSDLLGDLREELLNLCSLVELEIDFS 180 Query: 180 EEEDVQNFSSKEVLNDILFLKNDI-SSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 +E DV+ F+ +E L D+L +I + GE +++G ++VI G NAGKS+L NA Sbjct: 181 DE-DVE-FADRERLEDLLDETEEILGDLLDTYPTGEKLKDGVQVVIGGRPNAGKSTLLNA 238 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L D AIV++ PGTTRD + + ++EG L + DTAG+R+T D +E EG++R +E Sbjct: 239 LVGHDRAIVSETPGTTRDEIEAEAEIEGVLFRFVDTAGLRDTADEIEAEGVRRATESIEE 298 Query: 299 ADLILLLKEIN---SKKEISFPK-------NIDFIFIGTKSD---------LYSTYTEEY 339 AD++ L ++ +EI+F + ++ + IG K+D L + + Sbjct: 299 ADVLFYLYDLTVGLDSQEIAFLQDLADDGSDVQPVVIGNKADRAPDLPVATLDGLTSLKL 358 Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFS-IPSHKRHLYHLSQTVRYLEMASLNEK 398 L + + ++ L++ + ++ + S + ++RH HL + ++ A Sbjct: 359 SALEAREDADEVQPLLDHLTDTVAEHLSRAEASPVVMNQRHRQHLRDALDAVQQAR-EAL 417 Query: 399 DCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D G+ D++ +LR A LG ITG + E +LD IFS+FCIGK Sbjct: 418 DAGVSGDMLTLDLRAALQELGAITGEITNEDVLDQIFSRFCIGK 461 >gi|218295491|ref|ZP_03496304.1| tRNA modification GTPase TrmE [Thermus aquaticus Y51MC23] gi|218244123|gb|EED10649.1| tRNA modification GTPase TrmE [Thermus aquaticus Y51MC23] Length = 432 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 145/442 (32%), Positives = 236/442 (53%), Gaps = 19/442 (4%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG-----LDGR 59 K+ I A++T AI ++RLSG ++ + + P K R+ G G Sbjct: 4 KDPICAIATPPGKGAIGVVRLSGEGALELAARAFRGRDPRRLKGG-RFTLGEVVDPATGE 62 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 ++D+ LL+VF +P S+TGED EF HG AV+ ++E L + R A GEF+ RA+ Sbjct: 63 VIDQALLLVFRAPHSYTGEDLVEFQTHGSPAVLRRVMEVLVSL-GARPAGRGEFTLRAYL 121 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NGK+DL +AE++ LI +E E+ RR ++ + G LS +KL + + I+A LD+ Sbjct: 122 NGKLDLAQAEAVLALIEAEGELARRQALRALEGALSRRIAALEEKLLGLLAHIQALLDYP 181 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 EE V+ ++ V+ + L ++ ++Q K + + G ++ ++G NAGKSSL NAL Sbjct: 182 EE-GVEPHRAEGVIREAL---AEVEGLLAQAKASRLAQKGARLALIGAPNAGKSSLLNAL 237 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 + A+V+ IPGTTRD L L+L G + DTAG+RET+D +E+ G++R E A Sbjct: 238 LGYERALVSPIPGTTRDYLEAPLELFGIPLIAVDTAGVRETEDPLERAGVERALRIAEEA 297 Query: 300 DLILLLKEINSKKEISFPKNID-FIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKI 358 DLIL + + + + P + + + TK+DL + + +SS TGEG+ L + Sbjct: 298 DLILYVADRSVPRPPPPPLPWERVVRVATKADLPKAWEDPAFLSVSSLTGEGMGRLKEAL 357 Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGK 418 + L + + F + + ++ L R E +L E GL + E LR +L Sbjct: 358 REALLGR-EGGEFLL-TERQVEALLRAKERLGEALALPEDLMGL-ALEEALR----ALAA 410 Query: 419 ITGCVDVEQLLDIIFSKFCIGK 440 +TG E+++ +F FC+GK Sbjct: 411 LTGREVAEEVVARVFQNFCVGK 432 >gi|283768664|ref|ZP_06341576.1| tRNA modification GTPase TrmE [Bulleidia extructa W1219] gi|283105056|gb|EFC06428.1| tRNA modification GTPase TrmE [Bulleidia extructa W1219] Length = 441 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 141/448 (31%), Positives = 249/448 (55%), Gaps = 15/448 (3%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK-KPFPRKASLRYFFGLDGR 59 M+H+ TI A+ST A+SIIR+SGP F++ + +C K + +R Sbjct: 1 MSHD--TIAAISTADAMGAVSIIRISGPDTFEIVKKLCHKDVRNMEGYRMVRSEIYDQQE 58 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 ++D L+ VF +P S+TGED E + HGG+ + + IL+ L RLA GEF++RAF Sbjct: 59 VVDDSLISVFHAPYSYTGEDVVELNCHGGVYLTHKILQ-LVLGLGARLAKRGEFTQRAFL 117 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 N K+DL +AE++ DLI +E E+ + ++ + G + + ++L + + IE ++D+ Sbjct: 118 NEKMDLSQAEAIQDLIVAEDEINTKAAIHTLKGSILRVLRPLEEELIQMIAHIEVNIDYP 177 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 E +DV+ ++L + + + + + ++++ G + VI+G N GKSSL NAL Sbjct: 178 EYDDVEMLVESDILPKAKAWRQQLEKLVLESEKAQVVKGGVQTVIVGRPNVGKSSLLNAL 237 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 ++D AIVTDI GTTRD++ ++ + + + + DTAGIR+++D +E+ GI+++ +E A Sbjct: 238 LEEDKAIVTDIAGTTRDIVEGNIRIGSFSLHLIDTAGIRDSNDRIEQMGIEKSKKMIEKA 297 Query: 300 DLILLLKE------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEE 353 LILL+ + I ++ + K+ I I K DL S Y+ IS+ TG+ +E Sbjct: 298 QLILLVMDGSQELTIEDQELLEQTKDKTRIIIYNKKDLGSKYSGVQ---ISASTGQ-IEA 353 Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAENLRLA 412 L K++++ + ++ R + + ++ A + E LD++ +L+ + Sbjct: 354 LKEKLEALFQQEVLAASGDTLANDRQIGLAKAALGAMDQAIASLEAGMELDLVTLDLQES 413 Query: 413 SVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L +++G E LLD IFS+FC+GK Sbjct: 414 WNCLKEMSGGRSREGLLDEIFSRFCLGK 441 >gi|295133679|ref|YP_003584355.1| tRNA modification GTPase TrmE [Zunongwangia profunda SM-A87] gi|294981694|gb|ADF52159.1| tRNA modification GTPase TrmE [Zunongwangia profunda SM-A87] Length = 480 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 157/482 (32%), Positives = 251/482 (52%), Gaps = 53/482 (10%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFG--LDG-RI 60 +TI A++T + AI++IR+SGP + F K KK + + G +DG R Sbjct: 5 DTIVALATPSGAGAIAVIRVSGPEAISIVAPLFKAKSKKKLEEQPTHTLHLGNIVDGQRN 64 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+ L+ VF +P+S+TGE++ E HG + I++ L + R A GEF+ RAF N Sbjct: 65 LDEVLISVFRAPKSYTGEETIEISCHGSPYIQQEIIQLLVR-SGCRSAEAGEFTLRAFLN 123 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLISSE +++M+ M G S+ + ++L + S IE +LDF+E Sbjct: 124 AKMDLSQAEAVADLISSENAASHQMAMQQMRGGFSNEIQRLREELLNFASLIELELDFAE 183 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E DV+ + + N + ++ + I G +++NG + I+G N GKS+L NAL Sbjct: 184 E-DVEFANRDQFRNLVARIQKVLKRLIDSFATGNVLKNGIPVAIVGEPNVGKSTLLNALL 242 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIV++I GTTRDV+ +L + G + DTAGIRET D+VE GIK+TF ++ A Sbjct: 243 NEERAIVSEIAGTTRDVIEDELAIGGVGFRFIDTAGIRETKDVVESIGIKKTFEKIGQAQ 302 Query: 301 LILLLKEINSKKEISFPK------------------------------NIDFIFIGTKSD 330 +++ L + + +I F + + I K D Sbjct: 303 VVIYLFDTSRLSKIEFAEGSVAKDQLQGNETSLNMIQVEIEKIKNKYPQKPLVIIANKID 362 Query: 331 LYSTYTEEYD----------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380 TEE HL+S+ TG G+EEL K+ + ++ + +I ++ RH Sbjct: 363 ---QLTEEQVEILTSRIPDLHLLSAKTGLGVEELKEKLLNFVNTGALRNNNTIVTNSRHY 419 Query: 381 YHLSQTVRYLEMA--SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCI 438 L + + + LN + G D++A ++R A G+ITG + + LL IF+ FCI Sbjct: 420 NALLKALEEINKVEDGLNMELSG-DLLAIDIRQALHHFGEITGEITNDDLLGNIFANFCI 478 Query: 439 GK 440 GK Sbjct: 479 GK 480 >gi|332886080|gb|EGK06324.1| tRNA modification GTPase TrmE [Dysgonomonas mossii DSM 22836] Length = 463 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 167/468 (35%), Positives = 257/468 (54%), Gaps = 38/468 (8%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC---KKKKPFPRKASLRYFFGL--DG 58 E I A+ST A I+IIRLSG C ++ + + K KK KA +F L D Sbjct: 3 ENNIIAAISTPAGIGGIAIIRLSGNGCIELVDAVFRSFKGKKLADAKAYTVHFGSLIKDN 62 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 +LD L+ VF +P SFTGED E HG I + IL+ L LA PGEF++RAF Sbjct: 63 VVLDDVLVSVFRNPHSFTGEDIIEISCHGSIYIQQNILQLLIS-KGASLAQPGEFTQRAF 121 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NGK+DL +AES+ADLI+S + RL+M M G S+ + +L + S IE +LDF Sbjct: 122 LNGKMDLSQAESVADLIASSSAATHRLAMNQMRGGFSNKLIELRTELLNFTSLIELELDF 181 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQ----GKLGEIIRNGYKIVILGHSNAGKSS 234 SEE DV+ F++++ L + + I SHI + +G +++G + I+G +NAGKS+ Sbjct: 182 SEE-DVE-FANRDHLKE---AAHQIESHIKKLADSFSIGNAVKSGIPVAIIGETNAGKST 236 Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294 L N L ++ AIV+DI GTTRDV+ ++++G ++ DTAGIR+T D +E GI+RTF Sbjct: 237 LLNLLLHEEKAIVSDIHGTTRDVIEDTINIQGLTFRLIDTAGIRDTHDEIESLGIERTFK 296 Query: 295 EVENADLILLLKE---IN------SKKEISFPKNIDFIFIGTKSDLYSTYTE-EYDHLI- 343 ++E A+++L + + IN S+K + + + + K D+ S + E + L+ Sbjct: 297 KIEQANIVLWVADCETINEHIEELSQKILPVVGDRKLVLVFNKVDIISAERKAEKEKLLL 356 Query: 344 -----SSFTGEGLEELINKIKSILSNKFKKLPFS----IPSHKRHLYHLSQTVRYLEMAS 394 F E+ N+++ +L S I ++ RH L + ++ S Sbjct: 357 DKIPERVFISAKYEQGTNQLEDLLVKTANIPEISEQDIIVTNVRHYEALQNALTAIKRVS 416 Query: 395 --LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L K G D +++++R LG+ITG + +++L IFSKFCIGK Sbjct: 417 EGLELKISG-DFLSQDIRECLYYLGEITGQISTDEILGNIFSKFCIGK 463 >gi|163755505|ref|ZP_02162624.1| tRNA modification GTPase [Kordia algicida OT-1] gi|161324418|gb|EDP95748.1| tRNA modification GTPase [Kordia algicida OT-1] Length = 464 Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 155/468 (33%), Positives = 257/468 (54%), Gaps = 41/468 (8%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL---DGRI 60 +TI A++T + AIS+IR+SG +CE F + K ++ S G + R Sbjct: 5 DTIVALATPSGAGAISVIRVSGKDAITICEPLFKSVRNKNLSKQKSHTIHLGHIVDNDRY 64 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+ L+ +F P S+TGE++ E HG + + I++ L + R AN GEF+ R+F N Sbjct: 65 LDEVLVSLFKGPNSYTGENTIEISCHGSVYIQQQIIQLLLR-NGCRNANAGEFTLRSFLN 123 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GK+DL +AE++ADLI+S++E +L+M+ M G S+ ++L + S IE +LDF+E Sbjct: 124 GKLDLSQAEAVADLIASDSEASHQLAMQQMRGGFSNEIKNLREELLNFASLIELELDFAE 183 Query: 181 EE----DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 E+ D F K ++ I F+ + I +G +I+NG + I+G N GKS+L Sbjct: 184 EDVEFADRTQF--KTLVKRIQFV---LKRLIDSFAVGNVIKNGIPVAIVGEPNVGKSTLL 238 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 NAL ++ AIV+DI GTTRD + +L ++G + DTAGIRET D+VE GI++TF ++ Sbjct: 239 NALLNEERAIVSDIAGTTRDTIEDELVIDGISFRFIDTAGIRETKDVVESIGIQKTFEKI 298 Query: 297 ENADLIL-----------------LLKEINSKKEISFPKNIDFIFIGTKSD----LYSTY 335 E A +++ +L+EI+ K + FP+ + + K D + Sbjct: 299 EQAQVVIYLFDASLLSNDQEKSKVMLQEIH-KLQNKFPQK-PIVIVSNKIDKGDATFIKN 356 Query: 336 TEEYDH--LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA 393 T E+D+ L+S+ G+++L K+ S ++ + +I ++ RH L + + ++ Sbjct: 357 TFEFDNLLLLSAKENIGVDDLKEKLVSFVNTGALRNNETIITNTRHYDALLKALEEIDKV 416 Query: 394 SLN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E +D++A ++R A G+ITG + + LL IF+ FCIGK Sbjct: 417 HYGLESGLSVDLMAIDIRQALYHFGEITGEITSDDLLGNIFANFCIGK 464 >gi|329769256|ref|ZP_08260673.1| tRNA modification GTPase TrmE [Gemella sanguinis M325] gi|328839250|gb|EGF88833.1| tRNA modification GTPase TrmE [Gemella sanguinis M325] Length = 460 Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 155/470 (32%), Positives = 250/470 (53%), Gaps = 47/470 (10%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG- 64 ETI A+ST AI I+RLSG F + + I + K ++ + G ++D Sbjct: 3 ETICAISTALGEGAIGIVRLSGDEAFSIADKIVRLPKGKTVESLPTHTINY-GNVIDPAT 61 Query: 65 -------LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 +L+ P ++T ED E + HGGI + +L L R+A PGEF++RA Sbjct: 62 NEKIEEIMLVKMVGPRTYTTEDVVEINCHGGIITIQKVLA-LCLEHGARMAEPGEFTKRA 120 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NG+IDL +AE++ D I S+T+ +++ M G LS+L + ++ I + +E ++D Sbjct: 121 FLNGRIDLTQAEAVIDFIKSKTDEASQIANNQMQGRLSTLIKRLRAEILDILTVVEVNID 180 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 + E +D++ ++K +L +K + + K G+II+ G I+G N GKSSL N Sbjct: 181 YPEYDDLEIETTKTILEKSTSIKRSLEDLLETSKQGKIIKEGINTAIIGRPNVGKSSLLN 240 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 L +++ AIVTDI GTTRDVL ++++G +K+ DTAGIRETDDIVE+ G++R+ +E Sbjct: 241 NLLQENKAIVTDIAGTTRDVLEEYVNIKGVPIKLIDTAGIRETDDIVEQIGVQRSKDALE 300 Query: 298 NADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTYTEE------YDHLI 343 ADL+L L +NS +E++ K I I K DL + E ++H I Sbjct: 301 KADLVLFL--LNSSEELTEDDKELLKLTKGKTTIVILNKLDLETKIDLEEVEKLAHNHPI 358 Query: 344 ---SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR----YLEMASLN 396 S T +G++EL I+ + F + + +LS T + +ASLN Sbjct: 359 IKTSMTTYKGIDELEKNIRDLF--------FGGAARPKDATYLSNTRQINLIQRALASLN 410 Query: 397 E----KDCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E + GL D++ + A LG++ G ++L++ +FS+FC+GK Sbjct: 411 EAIGAAELGLEVDMVLIDYTNAFNLLGEVIGENSGDELINELFSRFCLGK 460 >gi|322516820|ref|ZP_08069722.1| tRNA modification GTPase TrmE [Streptococcus vestibularis ATCC 49124] gi|322124657|gb|EFX96121.1| tRNA modification GTPase TrmE [Streptococcus vestibularis ATCC 49124] Length = 456 Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 145/458 (31%), Positives = 252/458 (55%), Gaps = 22/458 (4%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---D 57 + E +TI A+ST AI I+RLSG + + K K AS +G + Sbjct: 3 ITKEFDTITAISTPLGEGAIGIVRLSGTDAVAIANKVFKGKN-LETVASHTINYGHIVEN 61 Query: 58 GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 +D+ ++ V +P++FT ED E + HGG+AV N IL+ L + R+A PGEF++RA Sbjct: 62 DETIDEVMVSVMRAPKTFTREDVVEINTHGGVAVTNEILQLLIR-SGARMAEPGEFTKRA 120 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NG++DL +AE++ DLI ++T+ +++ + G L L ++ + + +E ++D Sbjct: 121 FLNGRVDLTQAEAVMDLIRAKTDKAMAVAVSQLDGSLKDLINNTRQEILNTLAQVEVNID 180 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 + E +DV+ ++ V + + + ++ K G+I+R G I+G N GKSSL N Sbjct: 181 YPEYDDVEEVTTALVREKTQDFQALLENLLATAKRGKILREGLSTAIIGRPNVGKSSLLN 240 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 L +++ AIVTDI GTTRDV+ ++++G +K+ DTAGIR+TDD+VEK G++R+ +E Sbjct: 241 NLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRDTDDVVEKIGVERSKKALE 300 Query: 298 NADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDL-YSTYTEEYDH---LISS 345 ADL+LL+ +NS + ++ KN + I + K+DL + EE IS Sbjct: 301 EADLVLLV--LNSSEPLTEQDRTLLEISKNSNRIILLNKTDLPQAIQMEELPEDVIPISV 358 Query: 346 FTGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGL 402 E ++++ ++I + + + + S+ RH+ + + LE + E + Sbjct: 359 LKNENIDKIEDRINQLFFDNAGLVEKDATYLSNARHISLIESALESLEAVNQGLELGMPV 418 Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D++ ++ LG+ITG ++L+ +FS+FC+GK Sbjct: 419 DLLQVDITRTWEILGEITGDAAPDELITQLFSQFCLGK 456 >gi|289613219|emb|CBI59813.1| unnamed protein product [Sordaria macrospora] Length = 602 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 174/544 (31%), Positives = 252/544 (46%), Gaps = 124/544 (22%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFF---------- 54 +TI+A+S+G SG + V +C K P PR A++R Sbjct: 74 DTIYALSSG-----------SGRAGIAVYNSLCPTKPVPKPRYAAVRTLTEPTAPGKEVS 122 Query: 55 -GLDGRILDK-GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN-----LRL 107 + +LD L++ FP P++ TGED E HVHGG A V +L + K + +R Sbjct: 123 SAANANVLDTDALVLYFPGPKTVTGEDILELHVHGGSATVKAVLSAIPKSESTSSGTIRY 182 Query: 108 ANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTH 167 A GEF++RAF N +IDL + E+L D +S+ETE QRR ++ G SG L Y W ++L Sbjct: 183 AEQGEFTKRAFLNNRIDLAQVEALGDTLSAETEQQRRAAIRGTSGVLGKTYESWREQLLL 242 Query: 168 IRSFIEADLDFSEEEDVQNF--SSKEVLNDILFLKNDISSHISQGKLG----EIIRNGYK 221 R IEA +DFSE+ Q+F S E+L ++ L I I ++G E++RNG + Sbjct: 243 ARGEIEALIDFSED---QHFDESPTELLRNVTHLVKGILRSIKLHEMGSQRSELLRNGIR 299 Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I +LG N GKSSL N + ++ +IV+ GTTRD++ LD+ GYL +DTAGIR Sbjct: 300 IALLGPPNVGKSSLMNLIVGREASIVSSEAGTTRDIVEASLDIRGYLCSFADTAGIRTRS 359 Query: 282 DI-------------VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF------ 322 + +E+EGI+R + ++D+I++L + S+ N D Sbjct: 360 SLLPAEQKEEAPIGKIEEEGIRRARQKALDSDVIIVLASVEPHTNNSYRLNYDLSTLHLA 419 Query: 323 -----------------------IFIGTKSDLYSTYTEEYDH-------LISSFTGEGLE 352 + K+D+ ST E LIS T E + Sbjct: 420 SSAPESLLAINKSETVPPDVLAQLIQSFKNDVLSTALPENSPLKIKDPILISCRTAEQQQ 479 Query: 353 EL----------INKIKSILSNKFKKLPFSIPSHKRHLYH--------LSQTVRYLE--M 392 L I+ + S LS+ F L +IP HL L Q LE M Sbjct: 480 SLKDTDDKDPGKIHHLISRLSSSFADL-TAIPQDMEHLLGVTARQNELLGQCRDALEDFM 538 Query: 393 ASLNEKD-----------CGLDII--AENLRLASVSLGKITG---CVDVEQLLDIIFSKF 436 A N DI+ AE+LR+A+ L ITG DVE++L +IF KF Sbjct: 539 AEANPTTFEGEGMGIGEEVEADIVLAAEHLRVAAGKLAAITGKGEAGDVEEVLGVIFEKF 598 Query: 437 CIGK 440 C+GK Sbjct: 599 CVGK 602 >gi|110597255|ref|ZP_01385543.1| tRNA modification GTPase TrmE:Small GTP-binding protein domain:GTP-binding [Chlorobium ferrooxidans DSM 13031] gi|110341091|gb|EAT59559.1| tRNA modification GTPase TrmE:Small GTP-binding protein domain:GTP-binding [Chlorobium ferrooxidans DSM 13031] Length = 474 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 161/463 (34%), Positives = 246/463 (53%), Gaps = 33/463 (7%) Query: 8 IFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLDGRILD-KGL 65 I AV+T A++I+R+SG F + I KKK+ P R A + + G + D +GL Sbjct: 15 IAAVATPVGVGALAILRISGRGVFGIAGRIFKKKQNPAFRFAEAKGYTAHFGSVHDSEGL 74 Query: 66 L-----IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 + +V +P SFT ED EF HGG VV IL+ L RLA PGEF+RRAF N Sbjct: 75 IDEVVALVLRAPNSFTMEDMVEFTCHGGPVVVQHILKVLLD-EGCRLAEPGEFTRRAFLN 133 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G+IDLL+AE++ ++I + +E R ++ M G LS ++L + +E +LDFS Sbjct: 134 GRIDLLQAEAIGEMIHARSESAFRTAVTQMQGTLSLRLEAMREQLLRSCALLELELDFS- 192 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EEDV+ + +E+ + L+ ++ + + G I++ G VI G NAGKS+L N L Sbjct: 193 EEDVEFQNRRELQQQLGVLQEELRRLVDSYQHGRIMKEGVATVIAGRPNAGKSTLLNTLL 252 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 + +IV+ +PGTTRD + + +++DTAG+RE ++ VE EG+KR++ ++ AD Sbjct: 253 GLERSIVSHMPGTTRDYIEECFLYNKTMFRLTDTAGLREAEEAVEHEGVKRSYRKIAEAD 312 Query: 301 LILLLKEI---NSKKEI-------SFPKNIDFIFIGTKSDLYSTYTEEYDHL-------- 342 LI+ + ++ + E+ S +N I K DL S E L Sbjct: 313 LIVYILDLTLDDYADEVARILEFKSEYRNARMIVAANKIDLASESPERIQELREATGCDV 372 Query: 343 --ISSFTGEGLEELINKIKSILSNKFKKLPFS--IPSHKRHLYHLSQTVRYLEMAS-LNE 397 IS+ GEGLE L ++ S + KL + + + RH L LE A L Sbjct: 373 CGISAAKGEGLETL-KELMSTMVVGLDKLHEASVLVTSLRHYEALRNASDALENARMLIN 431 Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + ++IA LR A +G+ITG V E++L++IF +FCIGK Sbjct: 432 SNSETELIAFELRSALNYVGEITGKVINEEILNMIFDQFCIGK 474 >gi|322437335|ref|YP_004219547.1| tRNA modification GTPase TrmE [Acidobacterium sp. MP5ACTX9] gi|321165062|gb|ADW70767.1| tRNA modification GTPase TrmE [Acidobacterium sp. MP5ACTX9] Length = 456 Score = 210 bits (535), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 147/454 (32%), Positives = 246/454 (54%), Gaps = 25/454 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF-PRKASLRYFFGLD-GRILDK 63 +TI A+ST I ++RLSG + + + K P + L + G +LD+ Sbjct: 9 DTIVAISTPPGRGGIGVVRLSGADARAIALPMLRLKHALEPGRVRLAKIVDPESGEVLDE 68 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 ++ ++ +P S+T ED E H ++ +L + RLA PGEF++RAF +G++ Sbjct: 69 AVVTLYEAPHSYTTEDVVEIACHSSPVLLEAVLRGCVQA-GARLAEPGEFTQRAFLSGRL 127 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL +AE++ DLI + T Q R++ + G LS + +L + + +EA +DF+E+ D Sbjct: 128 DLTQAEAVHDLIEATTLHQARIAAAQLGGALSKIVAPIKRRLVELIAGLEAGVDFAED-D 186 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 + + E+ I +++ + + + G I+R G+ + I+G NAGKSSLFN L + Sbjct: 187 LDLMTEAEIAARIESVRDPLQALAATYDYGRIVREGFTLAIVGRPNAGKSSLFNRLLVRQ 246 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI----VEKEGIKRTFLEVENA 299 AIVTD PGTTRD ++ + +EG V++ DTAG+R D E++GI+RT + + A Sbjct: 247 RAIVTDQPGTTRDAISERMSIEGIPVELIDTAGLRTAPDGPEGEAERQGIERTNVAMAEA 306 Query: 300 DLIL-------LLKEINSKKEISFPKNIDFIFIGTKSDLYST--YTEEYDHLI--SSFTG 348 DL+L L K+I+ EI + ++ + KSDL S E + I S+ TG Sbjct: 307 DLVLHVVDGGALTKDID---EIVVAEARPYLRVLNKSDLLSAGVGAEASEGAIRTSALTG 363 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL--DIIA 406 EG+EEL I L+ ++ ++ R + Q V LE+A++ +D GL +++ Sbjct: 364 EGIEELKRAIVMALTQTATPPESAVLTNVRQHGAIMQAVDALEIAAVAAQD-GLPHELLL 422 Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +L A +L ++TG +++L++IFS FCIGK Sbjct: 423 LDLYGALDALDRLTGATSADEILNLIFSTFCIGK 456 >gi|323341065|ref|ZP_08081313.1| tRNA modification GTPase TrmE [Lactobacillus ruminis ATCC 25644] gi|323091486|gb|EFZ34110.1| tRNA modification GTPase TrmE [Lactobacillus ruminis ATCC 25644] Length = 462 Score = 210 bits (535), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 147/459 (32%), Positives = 244/459 (53%), Gaps = 24/459 (5%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLDGRI-- 60 E +TI A+ST AISI+R+SG + + + K K+ ++ Y +D + Sbjct: 6 EFDTIAAISTPPGEGAISIVRMSGEEAVSIAQKVFSGKDLTQAKSHTINYGHIVDPKTHE 65 Query: 61 -LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 +D+ ++ + +P++FT ED E + HGGI N IL+ L + RLA PGEF++RAF Sbjct: 66 EIDEVMVSLMLAPKTFTREDVVEINCHGGIVATNRILQ-LLLVNGARLAEPGEFTKRAFL 124 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 +G+IDL +AES+ DLI ++T+ ++++ + G LS L + + + +E ++D+ Sbjct: 125 HGRIDLTQAESVMDLIRAKTDRSMKIALNQLDGNLSHLIDSLRKDILDVLAQVEVNIDYP 184 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 E +DV+ ++K + + +K I + G+I+R G ++G N GKSSL N L Sbjct: 185 EYDDVEEMTTKLLKEKAIEIKQRIEQLLKTASQGKIMREGLATALVGRPNVGKSSLLNHL 244 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 +D AIVTD+ GTTRDV+ +++ G +K+ DTAGIRETDD VEK G++R+ +E + Sbjct: 245 LHEDKAIVTDVAGTTRDVIEEYVNVSGVPLKLIDTAGIRETDDKVEKIGVERSKKAIEQS 304 Query: 300 DLIL---------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLIS 344 DL+L L++ N KK I D + +L + S Sbjct: 305 DLVLLVLNAAESLTKEDLELIRLTNDKKRIIILNKTDLEEKLDRKELAKISGNAPVYATS 364 Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMASLNEKDCGL- 402 EG+E L I + N + ++ ++ RH+ L + L+ + L G+ Sbjct: 365 ILKNEGVEALEEAISKLFFNGIENSQSTVMVTNARHIALLEKAQNSLD-SVLEGISSGMP 423 Query: 403 -DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D++ ++ A LG+ITG ++LLD +FS+FC+GK Sbjct: 424 VDLVQIDMTEAWNLLGEITGESYEDELLDQLFSQFCLGK 462 >gi|310794446|gb|EFQ29907.1| GTP-binding protein TrmE [Glomerella graminicola M1.001] Length = 486 Score = 210 bits (535), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 160/491 (32%), Positives = 242/491 (49%), Gaps = 95/491 (19%) Query: 32 QVCEFICKKKK-PFPRKASLRYFF----GLDGRILDKGLLIV-FPSPESFTGEDSAEFHV 85 QV + +C K P PR A++R G DG ILD L++ FP + TGED E HV Sbjct: 4 QVYKGLCPNKPLPKPRYAAVRTLVDAQAGDDGPILDSNALVLYFPGSRTVTGEDVLELHV 63 Query: 86 HGGIAVVNGILEELAKMPN---LRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQ 142 HGG A V +L + K P+ +R A PGEF++RAF N ++DL + ESL D +S++TE Q Sbjct: 64 HGGPATVKAVLAAIPKCPSDSLIRYAEPGEFTKRAFLNDRLDLAQVESLGDTLSADTEQQ 123 Query: 143 RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNF--SSKEVLNDILFL- 199 RR ++ G SG L Y W ++L R IEA +DF+E+ Q+F S E++ ++ L Sbjct: 124 RRAAVRGSSGVLGRTYESWREQLLLARGEIEALIDFAED---QHFDESPSELMRNVSALV 180 Query: 200 ---KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 ++ I H + + E++RNG +I +LG N GKSSL N + ++ +IV+ GTTRD Sbjct: 181 ANMRHSIRVHEAASQRSELLRNGIRIALLGPPNVGKSSLMNLIVGREASIVSMEAGTTRD 240 Query: 257 VLTIDLDLEGYLVKISDTAGIRETDD-------------IVEKEGIKRTFLEVENADLIL 303 ++ + LD+ GYL +DTAGIR IVE+EGI+R + +D+I+ Sbjct: 241 IVEVSLDIRGYLCSFADTAGIRTKSSVSLGGDLSEPALGIVEEEGIRRAKQKASESDIII 300 Query: 304 LLKEINSKKEISFPKNID------------FIFIGTKSDLYSTYTEEYDHLISSFTGE-- 349 +L + ++ F N D + + K D T + L+ F GE Sbjct: 301 VLAAVEPGRDGGFRINYDAETLRLALEAQSCLVVVNKRDAVDGST--FSDLLGRFRGEVA 358 Query: 350 ----GLEE----------------------LINKIKSILSNKFKKLPFSIPSHKRHLYHL 383 G+ I+++ L F + S+P+ ++ L L Sbjct: 359 DHAPGMARAEIITISCREAQAKATSQKDPGAIHRLIDQLVESFAGM-TSLPTDQQDL--L 415 Query: 384 SQTVR--------------YLEMASLNEKDCGLDII--AENLRLASVSLGKITGCV---D 424 T R ++ +A E+ DI+ AE+LR A+ L KITG V D Sbjct: 416 GVTARQAQLLEQCRGFLGDFMAVAHPEEEGEEPDIVLAAEHLRYAADCLAKITGRVESGD 475 Query: 425 VEQLLDIIFSK 435 VE++L +IF K Sbjct: 476 VEEVLGVIFEK 486 >gi|146300457|ref|YP_001195048.1| tRNA modification GTPase TrmE [Flavobacterium johnsoniae UW101] gi|205829142|sp|A5FGE0|MNME_FLAJO RecName: Full=tRNA modification GTPase mnmE gi|146154875|gb|ABQ05729.1| tRNA modification GTPase TrmE [Flavobacterium johnsoniae UW101] Length = 466 Score = 210 bits (535), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 160/469 (34%), Positives = 260/469 (55%), Gaps = 39/469 (8%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK--KKKPFPRKASLRYFFGL---DGR 59 +++I A++T + AI++IR+SG + + K K K ++ + G +G+ Sbjct: 4 QDSIVALATPSGAGAIAVIRISGAEAVSIGNSVFKSIKNKDLTKQKTHTLHLGHIVDNGK 63 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 LD+ L+ VF P S+TGED+ E HG + I++ L + R+A+ GEF+ RAF Sbjct: 64 TLDEVLVSVFKGPNSYTGEDTIEISCHGSTYIQQQIIQLLLR-KGCRMADAGEFTLRAFL 122 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NGK+DL +AE++ADLISS+ E ++M+ M G S+ + ++L + S IE +LDF+ Sbjct: 123 NGKLDLSQAEAVADLISSDNEASHHIAMQQMRGGFSNEIAKLREELLNFASLIELELDFA 182 Query: 180 EEEDVQNFSSK----EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 EE DV+ F+ + E+LN I F+ + I +G +I+NG + I+G N GKS+L Sbjct: 183 EE-DVE-FADRTQFHELLNRIEFV---LKRLIDSFAVGNVIKNGIPVAIVGEPNVGKSTL 237 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 NAL ++ AIV+DI GTTRD + +L + G + DTAGIRET D+VE GIK+TF + Sbjct: 238 LNALLNEERAIVSDIAGTTRDTIEDELVIGGIGFRFIDTAGIRETKDVVESIGIKKTFEK 297 Query: 296 VENADLILLL------KEINSK--KEISFPKN----IDFIFIGTKSDLYS-----TYTEE 338 ++ A +++ L K +S+ EI KN + + K D+ S T++ Sbjct: 298 IDQAQVVIYLFDGLKFKASSSEFVSEIEQIKNKYPLKPLLIVVNKKDILSEDEVLNITQK 357 Query: 339 YDH------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM 392 ++ LIS+ G+EEL N++ S ++ + +I ++ RH L + + ++ Sbjct: 358 LENLNAKLLLISAKQKIGVEELKNELLSFVNTGALRNNETIVTNTRHYDSLLKALDEIQK 417 Query: 393 ASLN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E + D+IA +++ A G ITG V ++LL IF+ FCIGK Sbjct: 418 VKFGLETNLSSDLIALDIKEALYQFGLITGQVSNDELLGNIFANFCIGK 466 >gi|262118591|pdb|3GEE|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In Complex With Gdp And Folinic Acid gi|262118593|pdb|3GEI|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In Complex With Gcp gi|262118594|pdb|3GEI|B Chain B, Crystal Structure Of Mnme From Chlorobium Tepidum In Complex With Gcp gi|262118595|pdb|3GEI|C Chain C, Crystal Structure Of Mnme From Chlorobium Tepidum In Complex With Gcp Length = 476 Score = 210 bits (535), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 156/463 (33%), Positives = 246/463 (53%), Gaps = 34/463 (7%) Query: 8 IFAVSTGALPSAISIIRLSGPSCFQVCEFICKK---KKPFPRKASLRYFFG--LDGR-IL 61 I A++T A++I+R+SG + + + +K A FG DG ++ Sbjct: 18 IAAIATPVGVGALAIVRISGAGVLDLADRVFRKVHGSGKLAEAAGYTAHFGRLYDGEEMV 77 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121 D+ + +VF +P SFT E EF HGG VV +L L RLA PGEF+RRAF NG Sbjct: 78 DEVIALVFRAPRSFTAEQMVEFTCHGGPVVVGRVLR-LMLDNGCRLAEPGEFTRRAFLNG 136 Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181 +IDLL+AE++ ++I + TE R ++ M G+LS G ++L + IE +LDFSEE Sbjct: 137 RIDLLQAEAIGEMIHARTESAYRTAVSQMKGDLSVRLGGLREQLIRSCALIELELDFSEE 196 Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 DV+ S E+ I L+++++ I + G I+ G VI G NAGKS+L N L Sbjct: 197 -DVEFQSRDELTMQIETLRSEVNRLIDSYQHGRIVSEGVSTVIAGKPNAGKSTLLNTLLG 255 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 ++ AIV+ +PGTTRD + + + +++DTAG+RE + +E EGI+R+ +++ ADL Sbjct: 256 QERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADL 315 Query: 302 ILLLKEINSKK---EISFPKNI-------DFIFIGTKSDLYS------------TYTEEY 339 IL L ++ +++ E++ + + F+ + K D + T TE Sbjct: 316 ILYLLDLGTERLDDELTEIRELKAAHPAAKFLTVANKLDRAANADALIRAIADGTGTEVI 375 Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMA-SLNE 397 IS+ G+G++ L + ++ N K S+ + RH L L+ A L Sbjct: 376 G--ISALNGDGIDTLKQHMGDLVKNLDKLHEASVLVTSLRHYEALRNASDALQNALELIA 433 Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + ++IA LR A +G+ITG V E++L+ IF KFCIGK Sbjct: 434 HESETELIAFELRAALDYVGQITGKVVNEEVLNTIFDKFCIGK 476 >gi|319901508|ref|YP_004161236.1| tRNA modification GTPase trmE [Bacteroides helcogenes P 36-108] gi|319416539|gb|ADV43650.1| tRNA modification GTPase trmE [Bacteroides helcogenes P 36-108] Length = 461 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 157/471 (33%), Positives = 248/471 (52%), Gaps = 47/471 (9%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFI---------CKKKKPFPRKASLRYFFG 55 ++TI A++TG AI IR+SGP + I +K KP+ Y Sbjct: 3 QDTICAIATGQ-GGAIGCIRVSGPEAIGITSRIFIPAMAGKRLEKSKPYTLTFGCVYN-- 59 Query: 56 LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 D I+D+ L+ +F +P S+TGE+S E HG ++ IL+ L K R+A PGE+++ Sbjct: 60 -DTEIVDEVLVSLFRAPHSYTGENSTEITCHGSNYILQKILQLLIK-NGCRMAKPGEYTQ 117 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NGK+DL +AE++ADLI+S + RL+M M G S D+L S IE + Sbjct: 118 RAFLNGKMDLSQAEAVADLIASSSAATHRLAMSQMRGGFSKELTSLRDQLLRFTSLIELE 177 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQ----GKLGEIIRNGYKIVILGHSNAG 231 LDFS+ E+++ F+ + ++ L +DI ISQ +G I+NG + I+G +NAG Sbjct: 178 LDFSDHEELE-FADRA---ELCRLADDIERVISQLVHSFSVGNAIKNGVPVAIIGETNAG 233 Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR 291 KS+L N L ++ AIV+DI GTTRDV+ ++++G + DTAGIRET+D +E GI+R Sbjct: 234 KSTLLNVLLNEEKAIVSDIHGTTRDVIEDTVNIDGITFRFIDTAGIRETNDTIESLGIER 293 Query: 292 TFLEVENADLILLL-------KEINSKKEISFPK--NIDFIFIGTKSDLY----STYTEE 338 TF +++ A+++L + +I E P+ I + K+DL S T + Sbjct: 294 TFQKLDQAEIVLWMIDATDASSQIVQLSEQILPRCEGKQLILVLNKADLVQDTSSIATTD 353 Query: 339 YDHLISS-FTGEGLEELINKIKSILSNKFKKLPFS-----IPSHKRH---LYHLSQTVRY 389 + + S F I++++ IL LP I ++ RH L H + ++ Sbjct: 354 FPKNVKSIFISAKRRTNIDELQQILIAA-ANLPTVTQNDIIVTNIRHYEALTHALEAIQR 412 Query: 390 LEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++ N + D +++++R L I G V + +L IF FCIGK Sbjct: 413 VQQGLAN--NLSGDFVSQDIRECIFHLSDIAGEVTNDMVLQNIFQHFCIGK 461 >gi|21674894|ref|NP_662959.1| tRNA modification GTPase TrmE [Chlorobium tepidum TLS] gi|25453304|sp|Q8KAS1|MNME_CHLTE RecName: Full=tRNA modification GTPase mnmE gi|21648119|gb|AAM73301.1| thiophene and furan oxidation protein ThdF [Chlorobium tepidum TLS] Length = 473 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 156/463 (33%), Positives = 246/463 (53%), Gaps = 34/463 (7%) Query: 8 IFAVSTGALPSAISIIRLSGPSCFQVCEFICKK---KKPFPRKASLRYFFG--LDGR-IL 61 I A++T A++I+R+SG + + + +K A FG DG ++ Sbjct: 15 IAAIATPVGVGALAIVRISGAGVLDLADRVFRKVHGSGKLAEAAGYTAHFGRLYDGEEMV 74 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121 D+ + +VF +P SFT E EF HGG VV +L L RLA PGEF+RRAF NG Sbjct: 75 DEVIALVFRAPRSFTAEQMVEFTCHGGPVVVGRVLR-LMLDNGCRLAEPGEFTRRAFLNG 133 Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181 +IDLL+AE++ ++I + TE R ++ M G+LS G ++L + IE +LDFSEE Sbjct: 134 RIDLLQAEAIGEMIHARTESAYRTAVSQMKGDLSVRLGGLREQLIRSCALIELELDFSEE 193 Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 DV+ S E+ I L+++++ I + G I+ G VI G NAGKS+L N L Sbjct: 194 -DVEFQSRDELTMQIETLRSEVNRLIDSYQHGRIVSEGVSTVIAGKPNAGKSTLLNTLLG 252 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 ++ AIV+ +PGTTRD + + + +++DTAG+RE + +E EGI+R+ +++ ADL Sbjct: 253 QERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADL 312 Query: 302 ILLLKEINSKK---EISFPKNI-------DFIFIGTKSDLYS------------TYTEEY 339 IL L ++ +++ E++ + + F+ + K D + T TE Sbjct: 313 ILYLLDLGTERLDDELTEIRELKAAHPAAKFLTVANKLDRAANADALIRAIADGTGTEVI 372 Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMA-SLNE 397 IS+ G+G++ L + ++ N K S+ + RH L L+ A L Sbjct: 373 G--ISALNGDGIDTLKQHMGDLVKNLDKLHEASVLVTSLRHYEALRNASDALQNALELIA 430 Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + ++IA LR A +G+ITG V E++L+ IF KFCIGK Sbjct: 431 HESETELIAFELRAALDYVGQITGKVVNEEVLNTIFDKFCIGK 473 >gi|291561652|emb|CBL40451.1| tRNA modification GTPase trmE [butyrate-producing bacterium SS3/4] Length = 471 Score = 210 bits (534), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 158/459 (34%), Positives = 248/459 (54%), Gaps = 29/459 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFI----CKKKKPFPRKASLRYFFGLDG-RI 60 +TI A++T S I I+R+SG + +V E I KKK ++ Y + DG Sbjct: 18 DTIAAIATAMGNSGIGIVRISGENAVEVAEKIFREPGKKKLSEAESHTIHYGYVYDGDET 77 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+ LL++ P S+T ED+ E HGG+ V ILE + K RLA PGEF++RAF N Sbjct: 78 VDEVLLMLMRGPRSYTAEDTVEIDCHGGMLVTRRILETVLK-AGARLAEPGEFTKRAFLN 136 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G+IDL +AE++ D+I+++ E + S+ + G +S + D++ + +FIE+ LD E Sbjct: 137 GRIDLSQAEAVIDVINAKNEYALQSSVSQLRGSVSKEIHEIRDQIIYEIAFIESALDDPE 196 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 + + K +L +L +K + I G ++ G K VILG NAGKSSL N L Sbjct: 197 HISMDGYGEK-LLKVVLSVKKKLEKLIRSSSNGRVVSEGVKTVILGKPNAGKSSLMNVLV 255 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 +D AIVTD+ GTTRD+L + L+G + + DTAGIR+T+D+VEK G+ R E + AD Sbjct: 256 GEDRAIVTDVAGTTRDILEEHIYLQGISLNVVDTAGIRDTEDVVEKIGVSRAMEEAKKAD 315 Query: 301 LILLL----KEI--NSKKEISFPKNIDFIFIGTKSDLYSTYT-EEYDHL-------ISSF 346 LI+ + +E+ N + + F K + + KSDL + +E + IS+ Sbjct: 316 LIIYVVDGSRELDENDYQIMDFIKERKSVVLLNKSDLEPVVSADEVEKRSGHKVIGISAK 375 Query: 347 TGEGLEELINKIKSILSNKFKKLPFS---IPSHKRHLYHLSQTVRYLEMASLNEKDCGL- 402 G++ L +IKS+ ++ F+ + ++ RH+ L + M N + G+ Sbjct: 376 EETGIDLLEEEIKSLFYE--GEIDFNDQVMITNVRHVKALKDAFESMSMVE-NSIENGMP 432 Query: 403 -DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D + +L A LG I G + L++ IFSKFC+GK Sbjct: 433 EDFYSIDLMDAYEKLGLIVGESVEDDLVNEIFSKFCMGK 471 >gi|330837282|ref|YP_004411923.1| tRNA modification GTPase mnmE [Spirochaeta coccoides DSM 17374] gi|329749185|gb|AEC02541.1| tRNA modification GTPase mnmE [Spirochaeta coccoides DSM 17374] Length = 487 Score = 210 bits (534), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 152/453 (33%), Positives = 244/453 (53%), Gaps = 31/453 (6%) Query: 8 IFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLR--------YFFGLD-- 57 IFA++T SA++++R SGP + K F R +LR + F +D Sbjct: 46 IFALATPWGESALAVVRTSGPRAVE------KSCLMFSRPGALRAVGTAGLVHGFLMDRL 99 Query: 58 -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 G +D+ + V+ +TGE++ EF HG + + IL L R A+PGEF+ R Sbjct: 100 TGEKVDEVMASVYREGHGYTGEEAVEFSCHGSLDGIKRILR-LCADTGFRPASPGEFTFR 158 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF +G++DL +AE++ +L+S+ + R ++++ + G L S Q+ ++ I S IE L Sbjct: 159 AFIHGRMDLTKAEAVQELVSARSSRARVMALDRLGGALFSRIEQFKQQVLTILSGIEVQL 218 Query: 177 DFSEEE--DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234 D++E+E F E + L+N +S G++ +G ++V+ G +NAGKSS Sbjct: 219 DYAEDEIGGDTGFPVGESIATATALENLAASW----HAGQLYGSGARVVLAGATNAGKSS 274 Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294 LFN L K + AIV+DI GTTRD L ++ +++G V++ DTAG+RE+ D +E EG++RT Sbjct: 275 LFNLLLKDERAIVSDIHGTTRDYLEVEAEIDGIPVRLYDTAGLRESADTIEGEGMRRTMH 334 Query: 295 EVENADLILLLK----EINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEG 350 +E AD+I+L+K E S++E + I + KSDL S E IS GEG Sbjct: 335 LMEQADIIVLVKDGSVEKQSQEEYIHEDDNRLIVVHNKSDLRSKPLELSGLWISVKKGEG 394 Query: 351 LEELINKIKSILSNKFKK---LPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAE 407 + L+ I L ++ + I S+++ + A+++ LDI+A Sbjct: 395 ISALVEAIALRLRSRVPENGDEALVIESNRQRDGLYAAAQALRRAAAMDASGVPLDIVAA 454 Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L A SLG++TG V E +L+ IFS FC+GK Sbjct: 455 ELHAALRSLGELTGEVTSEDVLERIFSGFCVGK 487 >gi|319760161|ref|YP_004124099.1| tRNA modification GTPase [Candidatus Blochmannia vafer str. BVAF] gi|318038875|gb|ADV33425.1| tRNA modification GTPase [Candidatus Blochmannia vafer str. BVAF] Length = 474 Score = 210 bits (534), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 155/438 (35%), Positives = 227/438 (51%), Gaps = 41/438 (9%) Query: 41 KKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELA 100 K P PR A F G ++K + + FP P SFTGE+ E H HGG ++N +L + Sbjct: 40 KVPKPRTAEYLPFRDKQGSTIEKVITLFFPKPHSFTGENILEIHGHGGYIILNILLSRIL 99 Query: 101 KMPN-LRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYG 159 ++ + +RLANPGEF+ RAF N KIDL++AES+AD+I + + + + + G S+ Sbjct: 100 EISSKIRLANPGEFTERAFLNNKIDLIQAESIADIIDATSYQAAKAAYNSLQGFFSNQIH 159 Query: 160 QWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG 219 +DK+ + R +E+ +DFS++ D+ S ++ + + + G ++R+G Sbjct: 160 NILDKIIYCRMHVESTIDFSDQ-DIDTISYNKIKKILKNIITETDKIYKSAYSGSLLRDG 218 Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 KI+I G NAGKSSLFNAL D AI++ IPGTTRD L + L G I+DTAG++E Sbjct: 219 IKIIIAGKPNAGKSSLFNALINLDRAIISSIPGTTRDTLYETIQLNGITFHITDTAGLQE 278 Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINS-------------KKEISFPKNIDFIFI 325 + + +E GIKR E++ AD IL + + +S K + K I Sbjct: 279 HSTNEIELIGIKRAKNELKLADHILWVVDSSSCSNKYDDMLLPLQKTLPNINKKTTITII 338 Query: 326 GTKSDLYSTYTEEYDHLISSFTGEGLEELINK----IKSILSNKFKK------LPFSIP- 374 KSDL + + ++I+ +T L L+N +K L N K LP SI Sbjct: 339 RNKSDL--SLEKNGIYIINGYTCITLSALLNSGIDLLKKYLYNNTKHKIQHYTLPHSIEE 396 Query: 375 ------SHKRHLYHLSQTVRYLEMA--SLNEKDCGLDII----AENLRLASVSLGKITGC 422 + +RHL + +YL A LN CG+ II AE+LR A L KI G Sbjct: 397 NQNNFIARQRHLNIIKNAYQYLLSAQKQLNHYYCGVTIINDRFAEDLRYAHDELNKIFGK 456 Query: 423 VDVEQLLDIIFSKFCIGK 440 + LL IFS FCIGK Sbjct: 457 STPDNLLKKIFSSFCIGK 474 >gi|325970663|ref|YP_004246854.1| tRNA modification GTPase mnmE [Spirochaeta sp. Buddy] gi|324025901|gb|ADY12660.1| tRNA modification GTPase mnmE [Spirochaeta sp. Buddy] Length = 442 Score = 210 bits (534), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 146/445 (32%), Positives = 247/445 (55%), Gaps = 20/445 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL----DGRIL 61 + I+A++T SA++++R+SG C + + K A+ G +G + Sbjct: 8 DIIYALATAWAQSALAVVRVSGQGCRNLLSTRFSRPKALIEAANATLVHGYLRDGNGSAI 67 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121 D+ + V+ +T E+S EF HG +AV+ IL L +R A GEF+ RAF +G Sbjct: 68 DEVVAAVYTDGHGYTKEESVEFSCHGSLAVIKEILA-LFNHLGMRSAEGGEFTFRAFLHG 126 Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181 ++DL +AE++ +L+SS++++ R L++ + G L ++L I + +E LD++E+ Sbjct: 127 RLDLTQAEAVGELVSSQSQISRSLALGRLEGSLRGRIAAMKEQLLGIVAAVEVQLDYAED 186 Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 E + + L D++ D+S+ ++G + R G +IV+ G +NAGKSSLFN L K Sbjct: 187 ELDEFVFPRSGLVDLIKQVKDLSATY---QIGRLYRMGARIVLAGSTNAGKSSLFNLLLK 243 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 ++ +IV+ + GTTRD + DLD++G +++ DTAG+RE+DD +E EGI+RT + ADL Sbjct: 244 QERSIVSPVRGTTRDYIEADLDVQGIPIRLYDTAGLRESDDAIESEGIRRTERLIGQADL 303 Query: 302 ILLLKEINSKKEISFPKNID-FIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKS 360 ++ L ++S + PK + + + KSDL + IS+ TGEG+ L+ +I Sbjct: 304 VVYL--VDSTELGHVPKEDERTLVVYNKSDLVK--PPKGRMAISAQTGEGVPNLLAEIAK 359 Query: 361 ILSN---KFKKLPFSIPSHKRH--LYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVS 415 L+ I S ++H L + +Q ++ + L ++D LDI A L A + Sbjct: 360 RLAKGSVSSGDEQVVIESERQHTLLENAAQALQRCLV--LVDQDIPLDITAVELGEALQN 417 Query: 416 LGKITGCVDVEQLLDIIFSKFCIGK 440 LG++TG V +L IFS FC+GK Sbjct: 418 LGELTGEVTPADILQKIFSGFCVGK 442 >gi|322389428|ref|ZP_08062982.1| thiophene and furan oxidation protein ThdF [Streptococcus parasanguinis ATCC 903] gi|321143916|gb|EFX39340.1| thiophene and furan oxidation protein ThdF [Streptococcus parasanguinis ATCC 903] Length = 466 Score = 210 bits (534), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 148/462 (32%), Positives = 258/462 (55%), Gaps = 28/462 (6%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKAS--LRYFFGLD- 57 + E +TI A+ST AI I+RLSG F + + I K K + AS L Y +D Sbjct: 11 ITKEFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKD-LSKVASHTLNYGHIVDP 69 Query: 58 --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 ILD+ ++ SP++FT ED E + HGGIAV N IL+ L RLA PGEF++ Sbjct: 70 DKDEILDEVMVGAMRSPKTFTREDIIEINTHGGIAVTNEILQ-LVIREGARLAEPGEFTK 128 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG++DL +AE++ D+I ++T+ ++++ + G LS L ++ + + +E + Sbjct: 129 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 188 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +D+ E +DV+ +++ + + +++ + + G+I+R G I+G N GKSSL Sbjct: 189 IDYPEYDDVEEATTEIIREKTSEFEALLTNLLKTARRGKILREGISTAIIGRPNVGKSSL 248 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N L +++ AIVTDI GTTRDV+ +++ G +K+ DTAGIRET+DIVE+ G++R+ Sbjct: 249 LNNLLREEKAIVTDIEGTTRDVIEEYVNINGVPLKLVDTAGIRETEDIVEQIGVERSKKA 308 Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------I 343 ++ ADL+LL+ + ++ + ++ + I + K DL E D L I Sbjct: 309 LKEADLVLLVLNASEPLTDQDRQLLEISQDSNRIILLNKVDLPEKI--EIDQLPEDHIKI 366 Query: 344 SSFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK--- 398 S + ++++ ++I ++ + + + S+ RH+ + + V L+ ++NE Sbjct: 367 SVLKNQNIDQIEDRINALFFENAGLVEQDATYLSNARHISLIEKAVESLQ--AVNEGLAL 424 Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+ITG ++L+ +FS+FC+GK Sbjct: 425 GMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 466 >gi|15618747|ref|NP_225033.1| tRNA modification GTPase TrmE [Chlamydophila pneumoniae CWL029] gi|15836371|ref|NP_300895.1| tRNA modification GTPase TrmE [Chlamydophila pneumoniae J138] gi|16752200|ref|NP_445568.1| tRNA modification GTPase TrmE [Chlamydophila pneumoniae AR39] gi|33242198|ref|NP_877139.1| tRNA modification GTPase TrmE [Chlamydophila pneumoniae TW-183] gi|14195307|sp|Q9Z768|MNME_CHLPN RecName: Full=tRNA modification GTPase mnmE gi|4377152|gb|AAD18976.1| Thiophene/Furan Oxidation Protein [Chlamydophila pneumoniae CWL029] gi|8163542|gb|AAF73725.1| thiophene and furan oxidation protein ThdF [Chlamydophila pneumoniae AR39] gi|8979212|dbj|BAA99046.1| thiophene/furan oxidation protein [Chlamydophila pneumoniae J138] gi|33236709|gb|AAP98796.1| thiophene/furan oxidation protein [Chlamydophila pneumoniae TW-183] Length = 442 Score = 210 bits (534), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 160/448 (35%), Positives = 231/448 (51%), Gaps = 23/448 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG---LDGRILD 62 +TI A++T +I+++RLSGP + + I AS G + ++D Sbjct: 5 DTIAAIATPPGEGSIAVVRLSGPQAIVIADRIFSGS--VASFASHTIHLGQVIFEETLID 62 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 + LL++ SP SFTGED EF HGG + IL+ L + R A PGEFS+RAF NGK Sbjct: 63 QALLLLMRSPRSFTGEDVVEFQCHGGFFACSQILDALIAL-GARPALPGEFSQRAFLNGK 121 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 IDL++AE++ +LI +E R++ G S + + +F+E DF EEE Sbjct: 122 IDLVQAEAIQNLIVAENIDAFRIAQTHFQGNFSKKIQEIHTLIIEALAFLEVLADFPEEE 181 Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 +E + + L + D S +G+ + G +++ G N GKSSL NAL +K Sbjct: 182 QPDLLVPQEKIQNALHIVEDFISSFDEGQR---LAQGTSLILAGKPNVGKSSLLNALLQK 238 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 + AIVT IPGTTRD+L L+G +++ DTAG R TD+ +EKEGI+R +E AD I Sbjct: 239 NRAIVTHIPGTTRDILEEQWLLQGKRIRLLDTAGQRTTDNDIEKEGIERALSAMEEADGI 298 Query: 303 LLLKEINSKKEISFPKNI---DFIFIGTKSDLYSTY---TEEYDHLISSFTGEGL----E 352 L + + E PK + + K+DL T IS+ TGEGL + Sbjct: 299 LWVIDATQPLE-DLPKILFTKPSFLLWNKADLTPPPFLDTSLPQFAISAKTGEGLTQVKQ 357 Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLA 412 LI ++ + K K+ F + S RH L + R L+ A N +IIA LR A Sbjct: 358 ALIQWMQKQEAGKTSKV-FLVSS--RHHMILQEVARCLKEAQQNLYLQPPEIIALELREA 414 Query: 413 SVSLGKITGCVDVEQLLDIIFSKFCIGK 440 S+G ++G E +L IFSKFCIGK Sbjct: 415 LHSIGMLSGKEVTESILGEIFSKFCIGK 442 >gi|315640365|ref|ZP_07895480.1| tRNA modification GTPase TrmE [Enterococcus italicus DSM 15952] gi|315483870|gb|EFU74351.1| tRNA modification GTPase TrmE [Enterococcus italicus DSM 15952] Length = 465 Score = 210 bits (534), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 149/466 (31%), Positives = 248/466 (53%), Gaps = 30/466 (6%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFI----CKKKKPFPRKASLRYFFGL 56 + E +TI A+ST AISI+RLSG + + K+ P ++ Y + Sbjct: 4 ITKEFDTIAAISTPPGEGAISIVRLSGDQAIAIAANVFQAGTKQLAAVPSH-TIHYGHII 62 Query: 57 DGR---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEF 113 D + ++D+ ++ V +P++FT ED E + HGGI VVN +L+ L + RLA PGEF Sbjct: 63 DPKTEQLVDEVMVSVMRAPKTFTREDVVEINCHGGIVVVNQLLQLLLRQ-GARLAEPGEF 121 Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173 ++RAF NG++DL +AE++ DLI ++T+ L++ + G LS+L ++ + +E Sbjct: 122 TKRAFLNGRVDLSQAEAVMDLIRAKTDKAMNLALNQLDGRLSNLIRALRQEILETLAQVE 181 Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233 ++D+ E +DV+ +S+ ++ ++ I + + K G+I+R G I+G N GKS Sbjct: 182 VNIDYPEYDDVEALTSQLLVEKAHHVQAQIQALLQTAKQGKILREGLNTTIIGRPNVGKS 241 Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293 SL N L +++ AIVTD+ GTTRDV+ +++ G +K+ DTAGIRET+DIVE+ G++R+ Sbjct: 242 SLLNHLLREEKAIVTDVAGTTRDVIEEYVNVRGVPLKLVDTAGIRETEDIVERIGVQRSR 301 Query: 294 LEVENADLIL---------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEE 338 + ADLIL LL+ ++ K I D +S L S + Sbjct: 302 QALAKADLILLVLNQSEPLSEEDRQLLQATDATKRIVLLNKTDLPSQLDRSALASLVGDA 361 Query: 339 YDHLISSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRH---LYHLSQTVRYLEMAS 394 +S GL++L I + + S S+ RH L H SQ + ++ S Sbjct: 362 PVFEVSVLENAGLDKLEQAIADLFFGGQTTDKDASYVSNTRHIALLEHASQALS--DVIS 419 Query: 395 LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E +D++ ++ LG+I G ++L+ +FS+FC+GK Sbjct: 420 GIEAGMPVDLVQIDMTRCWDDLGEIVGDSVQDELITQLFSQFCLGK 465 >gi|91228358|ref|ZP_01262286.1| tRNA modification GTPase [Vibrio alginolyticus 12G01] gi|91188118|gb|EAS74422.1| tRNA modification GTPase [Vibrio alginolyticus 12G01] Length = 288 Score = 210 bits (534), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 118/288 (40%), Positives = 173/288 (60%), Gaps = 4/288 (1%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVC-EFICKKKKPFPRKASLRYFFGLDGRILDKG 64 +TI A +T + IIR+SGP QV E K KP R A F DG +LD+G Sbjct: 4 DTIVAQATAPGRGGVGIIRVSGPKANQVALEVTGKTLKP--RYAEYLPFKSEDGTVLDQG 61 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 + + FP+P SFTGED E HGG V++ +++ + + +R A PGEFS RAF N K+D Sbjct: 62 IALYFPNPHSFTGEDVLELQGHGGPVVMDMLIKRILGIDGIRAARPGEFSERAFLNDKLD 121 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ADLI + +E + +++ + G S ++ L H+R ++EA +DF EEE + Sbjct: 122 LAQAEAIADLIDASSEEAAKSALQSLQGAFSGRINTLVESLIHLRIYVEAAIDFPEEE-I 180 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + +V D+ + +++ + + G I+R G K+VI G NAGKSSL NAL+ K+ Sbjct: 181 DFLADGKVAGDLQAIIDNLDAVRKEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKES 240 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292 AIVTDI GTTRDVL + ++G + I DTA +R+ D VEK GI+R Sbjct: 241 AIVTDIAGTTRDVLREHIHIDGMPLHIIDTARLRDASDEVEKIGIERA 288 >gi|296810456|ref|XP_002845566.1| tRNA modification GTPase GTPBP3 [Arthroderma otae CBS 113480] gi|238842954|gb|EEQ32616.1| tRNA modification GTPase GTPBP3 [Arthroderma otae CBS 113480] Length = 622 Score = 210 bits (534), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 126/324 (38%), Positives = 185/324 (57%), Gaps = 43/324 (13%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFF-----GLDGRI 60 TI+A+ST +AI+IIR+SG C + + +C +K P PR A+LR + I Sbjct: 62 TIYALSTAPGRAAIAIIRISGSDCIPIYKALCPGRKLPKPRFAALRTIYEPGKPTSGDNI 121 Query: 61 LDKGLLIV-FPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP--------NLRLANPG 111 LD G L+ FP P + TGED E HVHG AV+ IL + K ++R A PG Sbjct: 122 LDSGALVFHFPGPNTVTGEDVLELHVHGSPAVIRSILNAIPKCAGTDGAPSSSIRYAEPG 181 Query: 112 EFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSF 171 EF+RRAF N ++DL + E+L + ++++TE QRRL++ G + LS+ Y QW +L + R Sbjct: 182 EFTRRAFLNDRLDLPQIEALGNTLAADTEQQRRLAIRGTNDALSTRYEQWRQQLLYARGE 241 Query: 172 IEADLDFSEEEDVQNFSSKEVLNDILF--------LKNDISSHISQGKLGEIIRNGYKIV 223 +EA +DFSE+ Q+F E ++D +F L + I+ HI GE++R+G K+ Sbjct: 242 LEALIDFSED---QHFD--ESVDDFIFSVTKQVHNLLHQINLHIQNAAKGELLRSGIKVA 296 Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR----- 278 +LG NAGKSSL N + ++ AIV+ GTTRD++ + +DL G+L K D AG+R Sbjct: 297 LLGAPNAGKSSLLNQVVGREAAIVSSEEGTTRDIVDVGVDLGGWLCKFGDMAGLRSELSK 356 Query: 279 ----------ETDDIVEKEGIKRT 292 T VE+EGI+R Sbjct: 357 SHIVAQGQTVSTIGKVEEEGIRRA 380 >gi|156082555|ref|XP_001608762.1| tRNA modification GTPase TrmE [Babesia bovis T2Bo] gi|154796011|gb|EDO05194.1| tRNA modification GTPase TrmE , putative [Babesia bovis] Length = 529 Score = 210 bits (534), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 154/492 (31%), Positives = 250/492 (50%), Gaps = 64/492 (13%) Query: 6 ETIFAVSTGALPSA--ISIIRLSGPSCFQVCEFICKK------KKPF---PRKASLRYFF 54 +T++ +S+ I++ R++G ++ + + K F PR A+LR + Sbjct: 45 QTVYGLSSAVHEGGCGIAVTRITGKQSLELLQLLTKSTGTNASNNTFECEPRVATLRVLY 104 Query: 55 G-LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVN---GILEELAKMPNL--RLA 108 +D+ + I FP+P SFTGED E H HG AV++ + EL+K L R A Sbjct: 105 DKTHSAPIDRVITIYFPAPNSFTGEDVVEIHTHGSRAVISQLFATIRELSKEYGLKVRQA 164 Query: 109 NPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHI 168 GEF+RRAF NGK+DL++AE++ D+I +ET+++ + + G LS +Y W D+L I Sbjct: 165 ERGEFTRRAFYNGKLDLIQAEAIRDVIRAETQIEVENAALKIYGRLSKIYHTWTDRLNQI 224 Query: 169 RSFIEADLDFSEEE--DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILG 226 +EA ++F+E+ D+QN + LNDI + +HI+ + E++ G + I+G Sbjct: 225 LGIVEAKIEFNEQASTDLQNTALARELNDI---ATQVRNHINDNR-AELVSMGATVAIVG 280 Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-------- 278 NAGKSSL N + ++VAIV D+PGTTRD + DL G + + DTAGIR Sbjct: 281 PPNAGKSSLINTICDRNVAIVADLPGTTRDPVHAKYDLNGIKITLVDTAGIRIVESETTE 340 Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEIN----SKKEISFPKN-----IDFIFIGTKS 329 + VE +GI+ +++A ++L L + + SK ++ N I +K+ Sbjct: 341 NSHQKVEMQGIEMALEYIKDAKVVLFLYDHDNDDMSKYALTMTMNKMSTHSKLIVCISKT 400 Query: 330 DL----------------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKF---KKLP 370 DL Y E L + +++L++ ++ ++ +K P Sbjct: 401 DLLENKKTQAIIRKLKKNYPLSNAEVIPLSTKIVN-TVDDLLDHVQQTFEKEYQEARKQP 459 Query: 371 F-SIPSHKRHLYH-LSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQL 428 F + K HL + L + R LE+ + + L+IIAEN+R A + I G E+L Sbjct: 460 FITDARQKNHLINVLKEIERTLEV--IQSGNHELEIIAENIRAAISQIAYIVGEQTNEEL 517 Query: 429 LDIIFSKFCIGK 440 LD IF FC+GK Sbjct: 518 LDTIFRTFCVGK 529 >gi|269302625|gb|ACZ32725.1| tRNA modification GTPase TrmE [Chlamydophila pneumoniae LPCoLN] Length = 442 Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 160/448 (35%), Positives = 231/448 (51%), Gaps = 23/448 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG---LDGRILD 62 +TI A++T +I+++RLSGP + + I AS G + ++D Sbjct: 5 DTIAAIATPPGEGSIAVVRLSGPQAIVIADRIFSGS--VASFASHTIHLGQVIFEETLID 62 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 + LL++ SP SFTGED EF HGG + IL+ L + R A PGEFS+RAF NGK Sbjct: 63 QALLLLMRSPRSFTGEDVVEFQCHGGFFACSQILDALIAL-GARPALPGEFSQRAFLNGK 121 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 IDL++AE++ +LI +E R++ G S + + +F+E DF EEE Sbjct: 122 IDLVQAEAIQNLIVAENIDAFRIAQTHFQGNFSKKIQEIHTLIIEALAFLEVLADFPEEE 181 Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 +E + + L + D S +G+ + G +++ G N GKSSL NAL +K Sbjct: 182 QPDLLVPQEKIQNALHIVEDFISSFDEGQR---LAQGTSLILAGKPNVGKSSLLNALLQK 238 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 + AIVT IPGTTRD+L L+G +++ DTAG R TD+ +EKEGI+R +E AD I Sbjct: 239 NRAIVTHIPGTTRDILEEQWLLQGKRIRLLDTAGQRTTDNDIEKEGIERALSAMEEADGI 298 Query: 303 LLLKEINSKKEISFPKNI---DFIFIGTKSDLYSTY---TEEYDHLISSFTGEGL----E 352 L + + E PK + + K+DL T IS+ TGEGL + Sbjct: 299 LWVIDATQPLE-DLPKILFTKPSFLLWNKADLAPPPFLDTSLPQFAISAKTGEGLTQVKQ 357 Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLA 412 LI ++ + K K+ F + S RH L + R L+ A N +IIA LR A Sbjct: 358 ALIQWMQKQEAGKTSKV-FLVSS--RHHMILQEVARCLKEAQQNLYLQPPEIIALELREA 414 Query: 413 SVSLGKITGCVDVEQLLDIIFSKFCIGK 440 S+G ++G E +L IFSKFCIGK Sbjct: 415 LHSIGMLSGKEVTESILGEIFSKFCIGK 442 >gi|23100946|ref|NP_694413.1| tRNA modification GTPase TrmE [Oceanobacillus iheyensis HTE831] gi|32171820|sp|Q8CX54|MNME_OCEIH RecName: Full=tRNA modification GTPase mnmE gi|22779181|dbj|BAC15447.1| tRNA modification GTPase [Oceanobacillus iheyensis HTE831] Length = 459 Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 147/465 (31%), Positives = 253/465 (54%), Gaps = 36/465 (7%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLDGRIL 61 + +TI A+ST AI+I+RLSG + I + K + P +++Y G+I+ Sbjct: 3 DTDTITAISTPVGEGAIAIVRLSGSEAITITSQIFEGKNLQEVPSH-TIQY-----GKII 56 Query: 62 DKG--------LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE-ELAKMPNLRLANPGE 112 D G ++ + P++FT ED E + HGG+ VN +LE LAK +RLA PGE Sbjct: 57 DPGTNEVAEEVMVSIMRGPKTFTREDVVEINCHGGMVAVNRVLEIVLAK--GVRLAEPGE 114 Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172 F++RAF +G+IDL +AE++ DLI ++T+ ++++ M G LS L + +L + + Sbjct: 115 FTKRAFLHGRIDLSQAEAVMDLIRAKTDKAMSVALKQMDGRLSKLIQKLRQELLETVAHV 174 Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232 E ++D+ E +DV+ S + +++++ + + G+I+R G I+G N GK Sbjct: 175 EVNIDYPEYDDVEEMSHAMMKEKSKEVRDELDKLLQIAQQGKILREGLSTAIIGRPNVGK 234 Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292 SSL N L +++ AIVT+IPGTTRD++ +++ G +++ DTAGIRET+DIVE+ G+ R+ Sbjct: 235 SSLMNTLVQENKAIVTEIPGTTRDIIEEYVNVRGVPLRLVDTAGIRETEDIVERIGVDRS 294 Query: 293 FLEVENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYST--------YTEE 338 ++ +DLIL + N KK +++I I K+DL + ++ Sbjct: 295 RQVLKESDLILFVLNYNEPLSEDDKKLFEAVDGLEYIVIINKTDLEQQLDLDEVREFAKD 354 Query: 339 YDHLISSFTGE-GLEELINKIK-SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396 + ++ E G++EL I + + + S+ RH+ L Q + LE A Sbjct: 355 RPVVTTALLEEQGVDELEKAIADTFFTGDIDTGDMTYVSNVRHIQLLKQAKQALEDAMEG 414 Query: 397 -EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E +DI+ ++ + +G+I G + L+D +FS+FC+GK Sbjct: 415 IELGMPMDIVQIDVTRSWEFMGEIIGDTASDSLIDQLFSQFCLGK 459 >gi|189485762|ref|YP_001956703.1| tRNA modification GTPase [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287721|dbj|BAG14242.1| tRNA modification GTPase [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 471 Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 171/464 (36%), Positives = 257/464 (55%), Gaps = 32/464 (6%) Query: 1 MNHEKE-TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK-KKPFPRKASLRYFFGLDG 58 MN+ KE TI A+ST A SAI++IRLSG + FQ+ I K KP + +++ + DG Sbjct: 16 MNYLKEDTIAALSTAAGKSAIAVIRLSGENSFQIIGKIFKTHSKP---EQQVKHGYITDG 72 Query: 59 -RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 D+ L F +P ++TGE+ E HG ++N IL L K R A PGEF+ RA Sbjct: 73 IEKKDEVLCTFFKAPHTYTGENLVEIAAHGNPVIINEILNLLYK-NGARPAGPGEFTYRA 131 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F N K++L EAE++ LI+S+TEM + ++ +SGE SS D +T++ + +EA+LD Sbjct: 132 FLNDKMNLAEAEAVCALITSKTEMSAKAALNSLSGEFSSKIKNIRDAVTNLIASMEANLD 191 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 +E+++ S E L+ D+ + ++ K G+I++ G K+VI+G NAGKSSL N Sbjct: 192 HPDEDNMF-LSRSEKLSRFDSCIKDVQNLLNSYKTGKILQYGIKVVIIGKPNAGKSSLLN 250 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEV 296 A+ K+ AIVTDI GTT D + +D G + I+DTAGIRE +++++E G +T V Sbjct: 251 AILGKNRAIVTDIAGTTTDTVEETIDCCGIPLIITDTAGIREHSENLIEILGQAKTREAV 310 Query: 297 ENADLILLL------KEINSKKEISFPK----NIDFIFIGTKSDLYSTYTEEYDHL---- 342 AD+++ L + N K F K NI I + KSDL ++ + Sbjct: 311 CKADILIWLFDSSSEPDCNDAKIADFLKKSDLNIPIICVLNKSDLPPLFSSSLLNRENKV 370 Query: 343 ---ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL--EMASLNE 397 IS+ TG G+ +L+++I I K + + + RH L T+ L SL+ Sbjct: 371 KVKISAKTGVGIADLLDEIVKIAGVSESKNDY-LMINTRHFILLQNTLESLIRTKQSLSA 429 Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQ-LLDIIFSKFCIGK 440 KD E L A +SL +I G ++V+Q +LD IFS FCIGK Sbjct: 430 KDADEIACFEALS-AQISLNEILG-INVKQDILDTIFSTFCIGK 471 >gi|205829219|sp|B1GYZ9|MNME_UNCTG RecName: Full=tRNA modification GTPase mnmE Length = 456 Score = 209 bits (533), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 171/464 (36%), Positives = 257/464 (55%), Gaps = 32/464 (6%) Query: 1 MNHEKE-TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK-KKPFPRKASLRYFFGLDG 58 MN+ KE TI A+ST A SAI++IRLSG + FQ+ I K KP + +++ + DG Sbjct: 1 MNYLKEDTIAALSTAAGKSAIAVIRLSGENSFQIIGKIFKTHSKP---EQQVKHGYITDG 57 Query: 59 -RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 D+ L F +P ++TGE+ E HG ++N IL L K R A PGEF+ RA Sbjct: 58 IEKKDEVLCTFFKAPHTYTGENLVEIAAHGNPVIINEILNLLYK-NGARPAGPGEFTYRA 116 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F N K++L EAE++ LI+S+TEM + ++ +SGE SS D +T++ + +EA+LD Sbjct: 117 FLNDKMNLAEAEAVCALITSKTEMSAKAALNSLSGEFSSKIKNIRDAVTNLIASMEANLD 176 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 +E+++ S E L+ D+ + ++ K G+I++ G K+VI+G NAGKSSL N Sbjct: 177 HPDEDNMF-LSRSEKLSRFDSCIKDVQNLLNSYKTGKILQYGIKVVIIGKPNAGKSSLLN 235 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEV 296 A+ K+ AIVTDI GTT D + +D G + I+DTAGIRE +++++E G +T V Sbjct: 236 AILGKNRAIVTDIAGTTTDTVEETIDCCGIPLIITDTAGIREHSENLIEILGQAKTREAV 295 Query: 297 ENADLILLL------KEINSKKEISFPK----NIDFIFIGTKSDLYSTYTEEYDHL---- 342 AD+++ L + N K F K NI I + KSDL ++ + Sbjct: 296 CKADILIWLFDSSSEPDCNDAKIADFLKKSDLNIPIICVLNKSDLPPLFSSSLLNRENKV 355 Query: 343 ---ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL--EMASLNE 397 IS+ TG G+ +L+++I I K + + + RH L T+ L SL+ Sbjct: 356 KVKISAKTGVGIADLLDEIVKIAGVSESKNDY-LMINTRHFILLQNTLESLIRTKQSLSA 414 Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQ-LLDIIFSKFCIGK 440 KD E L A +SL +I G ++V+Q +LD IFS FCIGK Sbjct: 415 KDADEIACFEALS-AQISLNEILG-INVKQDILDTIFSTFCIGK 456 >gi|189195158|ref|XP_001933917.1| tRNA modification GTPase mss1, mitochondrial precursor [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187979796|gb|EDU46422.1| tRNA modification GTPase mss1, mitochondrial precursor [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 491 Score = 209 bits (533), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 155/483 (32%), Positives = 234/483 (48%), Gaps = 88/483 (18%) Query: 41 KKPFPRKASLRYFFGLD-----GRILDKGLLIV-FPSPESFTGEDSAEFHVHGGIAVVNG 94 ++P PR A+LR + + ILD G L++ FP+P + TGED E HVHGG A+V Sbjct: 9 QRPLPRYATLRKLYAPNLPPSPTTILDSGALVLYFPAPNTVTGEDVLELHVHGGPAIVRA 68 Query: 95 IL---EELAKMPN--------LRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQR 143 +L E A +P +R A PGEF+RRAF N ++DL + ESL + +S+ TE QR Sbjct: 69 VLAAIPECATVPGGSAPMRTRIRYAEPGEFTRRAFANNRMDLPQIESLRETLSASTEQQR 128 Query: 144 RLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSS---KEVLNDILFLK 200 +LS+ G + L++ Y W L R +EA +DFSE++ + V + L+ Sbjct: 129 KLSVRGTTSSLAARYEHWRMLLLQARGELEALIDFSEDQHFDESPAVLCASVAAQVDALR 188 Query: 201 NDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260 + +H++ GE++RNG + +LG NAGKSSL N + +D AIV+ GTTRDV+ + Sbjct: 189 VLMEAHVANAVRGELLRNGISVALLGAPNAGKSSLLNRVVGRDAAIVSQEAGTTRDVVEV 248 Query: 261 DLDLEGYLVKISDTAGIRETD-------DIVEKEGIKRTFLEVENADLILLL-------- 305 LDL G+LVKI D AG+R+ +VE+EGI+R +D+++++ Sbjct: 249 GLDLGGWLVKIGDMAGLRKAGLVGADVVGVVEQEGIRRAKQRALESDVVIVVQDATADMD 308 Query: 306 KEINSKKEISFPKNIDFIFIGTKSD---LYSTYTEEYDHLISSFTGEGLEELI------- 355 +E+ + ID I K+D +ST ++ I S G + + Sbjct: 309 QEVMETAKQCVDLGIDVIVAINKTDRLPAFSTARSAWEEKIQSTLGISSDRICFISCNET 368 Query: 356 ----NKIKS---ILSNKFKKL-----PFSIPSHKRHLYHLSQTVR--------------- 388 IKS IL N F+ + P S P L T R Sbjct: 369 TPTAGNIKSFLDILQNTFQSMTAALVPDSDPDPSIWQESLGATERQRLLLSESLSHLSTF 428 Query: 389 ---YLEMASLNEKDC--------GLDII--AENLRLASVSLGKITG---CVDVEQLLDII 432 ++N C +DI+ AE LR A+ +L +ITG DVE++L ++ Sbjct: 429 LTTVANPTTVNLAACESGAGEADEVDIVVAAECLRSAADALARITGRGDSGDVEEVLGVV 488 Query: 433 FSK 435 F K Sbjct: 489 FEK 491 >gi|317131002|ref|YP_004097284.1| tRNA modification GTPase TrmE [Bacillus cellulosilyticus DSM 2522] gi|315475950|gb|ADU32553.1| tRNA modification GTPase TrmE [Bacillus cellulosilyticus DSM 2522] Length = 458 Score = 209 bits (533), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 156/464 (33%), Positives = 250/464 (53%), Gaps = 34/464 (7%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPR--KASLRYFFGLDGRIL 61 E +TI A+ST AI+I+R+SG + + I + KK ++ Y + +D Sbjct: 2 EMDTIAAISTPMGEGAIAIVRISGDEAVNIADLIYQGKKSLKEVETHTINYGYIVDPETN 61 Query: 62 DK---GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 DK ++ V +P++FT E+ E + HGGI VN IL+ L RLA PGEF++RAF Sbjct: 62 DKIEEVMVSVLLAPKTFTKENIIEINCHGGIISVNRILQ-LIISHGARLAEPGEFTKRAF 120 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG+IDL +AE + DLI ++T+ ++M + G+LS + L + +E ++D+ Sbjct: 121 LNGRIDLSQAEGVIDLIRAKTDRAMNVAMSQLEGKLSKRIQKSRQDLLETVAHVEVNIDY 180 Query: 179 SE--EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 E E++ KE +D+ K DI + + + G+I+R+G VI+G N GKSSL Sbjct: 181 PEYDAEEMTLALLKEKAHDV---KADIENLLQTAQQGKILRDGLSTVIIGRPNVGKSSLL 237 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N L + AIVT+I GTTRDV+ +++ G +++ DTAGIRETDD+VEK G++R+ V Sbjct: 238 NNLVHDNKAIVTEIAGTTRDVIEEYVNVRGVPLRLLDTAGIRETDDVVEKIGVERSRKVV 297 Query: 297 ENADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTYTEEYDHLISS--- 345 +A+L+LL+ +N +E++ K + I I K+DL E +++ Sbjct: 298 GDAELVLLV--LNYNEELTESDEELFHISKGKERIIIINKTDLERKINMERVKQLANEAP 355 Query: 346 ------FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398 EG++EL IK + + + S+ RH+ L + +R + A L Sbjct: 356 IVSTSLIKDEGVDELEEAIKVLFFQGDIETTDLTYVSNTRHITLLQEALRSVSEA-LEAI 414 Query: 399 DCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D GL D+I ++ LG++ G E L+D +FS+FC+GK Sbjct: 415 DAGLPIDMIQIDITKTWELLGEVIGESVHESLIDQLFSQFCLGK 458 >gi|325694429|gb|EGD36338.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis SK150] Length = 457 Score = 209 bits (533), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 145/459 (31%), Positives = 256/459 (55%), Gaps = 22/459 (4%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLDGR 59 + E +TI A+ST AI I+RLSG F + + I K K ++ +L Y +D + Sbjct: 2 ITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKNLSKVESHTLNYGHIVDPQ 61 Query: 60 ---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 ILD+ ++ SP++FT ED E + HGGIAV N IL+ LA R+A PGEF++R Sbjct: 62 NQEILDEVMVGAMRSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARMAEPGEFTKR 120 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NG++DL +AE++ D+I ++T+ +++ + G L +L ++ + + +E ++ Sbjct: 121 AFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLFNLINNTRQEILNTLAQVEVNI 180 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D+ E +DV+ +++ + + +S+ ++ + G+I+R G I+G N GKSSL Sbjct: 181 DYPEYDDVEEMTTQLMREKTAEFEALLSNLLNTARRGKILREGISTAIIGRPNVGKSSLL 240 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N L +D AIVTDI GTTRDV+ ++++G +K+ DTAGIRETDD+VE+ G++R+ + Sbjct: 241 NNLLCEDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEQIGVERSKKAL 300 Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------IS 344 + ADL+LL+ + ++ + K + I + K+DL E D L IS Sbjct: 301 QEADLVLLVLNASEPLTDQDRQLLEISKGSNRIVLLNKTDLEEKI--ELDQLPADAIKIS 358 Query: 345 SFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCG 401 + ++++ +I + + + + S+ RH+ + + + L+ + E Sbjct: 359 VLHNQNIDKIEERINQLFFENAGIVEQDATYLSNARHISLIEKALESLQAVNQGLEMGMP 418 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ ++ LG+ITG ++L+ +FS+FC+GK Sbjct: 419 VDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 457 >gi|313678189|ref|YP_004055929.1| tRNA modification GTPase TrmE [Mycoplasma bovis PG45] gi|312950578|gb|ADR25173.1| tRNA modification GTPase TrmE [Mycoplasma bovis PG45] Length = 445 Score = 209 bits (533), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 164/458 (35%), Positives = 246/458 (53%), Gaps = 39/458 (8%) Query: 6 ETIFAVSTGA-LPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA--SLRYFFGL------ 56 +TI A+S+G + AISIIR+SGP V + K F K S FG Sbjct: 4 DTITAISSGGKINQAISIIRVSGPDSVNVVQ------KVFTGKVGKSHTITFGNIVDNLN 57 Query: 57 DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 + I+D+ L + F +F GED+ E + HGG+ + N ILE L RLA PGEFSRR Sbjct: 58 NNEIVDEVLCMWFLGTNNFVGEDTVEINCHGGVVITNRILE-LLLANGARLAEPGEFSRR 116 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDK-LTHIRSFIEAD 175 +F NGKIDL++AE++ DLI + T Q +L+++ G+ +SLY Q + K L+ + +E Sbjct: 117 SFLNGKIDLIKAEAINDLIHASTVSQTKLAIKKFDGK-TSLYIQELKKELSFLIGEMEVS 175 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +D+ E D N + ++ + ++N I+ I + +I G KI ILG N GKSS+ Sbjct: 176 IDYPEY-DFDNPFNDKLTARLKQIRNKINQTIELSQTSRMIFEGIKIAILGKPNVGKSSI 234 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N++ ++D AIVTDI GTTRD++ +G L K DTAGIRET + +EK GI ++F + Sbjct: 235 LNSILEEDKAIVTDIAGTTRDIVEAMWQYKGLLFKFVDTAGIRETKEKIEKIGIDKSFEQ 294 Query: 296 VENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFT 347 ++ AD++L + + + K K + N +I + K DL + L S Sbjct: 295 IDKADVVLHIYDPSQKNDEFDEQIKSKALSLNKVYIPVINKKDLVKNIDDNL--LYVSAK 352 Query: 348 GEGLEELINKIKSILSNKFKKLPFS---IPSHKRHLYHLSQTVRYLEMASLNEKDCGL-- 402 L+EL K+ S+ FK + + ++ R L + Q + L+ A LN + G Sbjct: 353 QNDLDELKEKLVSV----FKNVDLNNDQYVNNSRQLALIKQAQKSLDDA-LNSIENGYDP 407 Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D++ +LR A L ITG D E LLD +F FC+GK Sbjct: 408 DVVIIDLRQAWSHLTDITGRADNELLLDEMFKNFCLGK 445 >gi|296876607|ref|ZP_06900657.1| tRNA modification GTPase TrmE [Streptococcus parasanguinis ATCC 15912] gi|296432426|gb|EFH18223.1| tRNA modification GTPase TrmE [Streptococcus parasanguinis ATCC 15912] Length = 466 Score = 209 bits (533), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 146/461 (31%), Positives = 257/461 (55%), Gaps = 26/461 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLD-- 57 + E +TI A+ST AI I+RLSG F + + I K K + +L Y +D Sbjct: 11 ITKEFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKDLTSVASHTLNYGHIVDPD 70 Query: 58 -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 ILD+ ++ SP++FT ED E + HGGIAV N IL+ L RLA PGEF++R Sbjct: 71 KNEILDEVMVGAMRSPKTFTREDIIEINTHGGIAVTNEILQ-LVIREGARLAEPGEFTKR 129 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NG++DL +AE++ D+I ++T+ ++++ + G LS L ++ + + +E ++ Sbjct: 130 AFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVNI 189 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D+ E +DV+ +++ + + +++ + + G+I+R G I+G N GKSSL Sbjct: 190 DYPEYDDVEEATTEIIREKTSEFEALLTNLLKTARRGKILREGISTAIIGRPNVGKSSLL 249 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N L +++ AIVTDI GTTRDV+ +++ G +K+ DTAGIRET+DIVE+ G++R+ + Sbjct: 250 NNLLREEKAIVTDIEGTTRDVIEEYVNINGVPLKLVDTAGIRETEDIVEQIGVERSKKAL 309 Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------IS 344 + ADL+LL+ + ++ + ++ + I + K DL E D L IS Sbjct: 310 KEADLVLLVLNASEPLTDQDRQLLEISQDSNRIILLNKVDLPEKI--EIDQLPEDHIKIS 367 Query: 345 SFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK---D 399 + ++++ ++I ++ + + + S+ RH+ + + V L+ ++NE Sbjct: 368 VLKNQNIDQIEDRINALFFENAGLVEQDATYLSNARHISLIEKAVESLQ--AVNEGLALG 425 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+ITG ++L+ +FS+FC+GK Sbjct: 426 MPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 466 >gi|120436262|ref|YP_861948.1| tRNA modification GTPase TrmE [Gramella forsetii KT0803] gi|205829153|sp|A0M2N6|MNME_GRAFK RecName: Full=tRNA modification GTPase mnmE gi|117578412|emb|CAL66881.1| tRNA modification GTPase [Gramella forsetii KT0803] Length = 474 Score = 209 bits (533), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 155/475 (32%), Positives = 258/475 (54%), Gaps = 45/475 (9%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFG--LDG-RI 60 +TI A++T + AI+IIR+SGP ++ F K KK ++ + G +DG R Sbjct: 5 DTIVALATPSGAGAIAIIRVSGPDALEIVAPLFKAKSKKDLAKQPTHTLHLGNVMDGERT 64 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+ L VF +P+S+TGE++ E HG + I++ L + + R A GEF+ RAF N Sbjct: 65 IDEVLASVFRAPKSYTGEETVELSCHGSPYIQQEIIQLLIR-KSCRSAEAGEFTLRAFLN 123 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI+SE +++M+ M G S+ + ++L + S IE +LDF+E Sbjct: 124 AKMDLSQAEAVADLINSENAASHQMAMQQMRGGFSNEIQKLREELLNFASLIELELDFAE 183 Query: 181 EEDVQNFSSKEVLNDILF-LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 E DV+ F++++ D++ ++ + + G +++NG + I+G N GKS+L NAL Sbjct: 184 E-DVE-FANRDQFKDLVSKIQTVLKRLLDSFATGNVLKNGIPVAIVGEPNVGKSTLLNAL 241 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 ++ AIV++I GTTRD + ++ + G + DTAGIRET D+VE GIK+TF ++ A Sbjct: 242 LNEERAIVSEIAGTTRDTIEDEMSIGGVGFRFIDTAGIRETKDVVESIGIKKTFEKISQA 301 Query: 300 DLILLLKE-----INSKK------EI-----SFPKNIDFIFIGTKSD---------LYST 334 +++ L + +N ++ EI FP+ + I K+D L + Sbjct: 302 QVVVYLVDSSQIAVNRERLQQVRIEIEKIKNKFPQK-PLLIIANKTDRLADEEIHNLKTK 360 Query: 335 YTEEYDH-------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV 387 E H L+S+ T G+EEL K+ ++ + +I ++ RH L + + Sbjct: 361 LEEISSHAERAQFLLLSAKTNLGVEELKEKLLEYVNTGALRNSDTIVTNSRHYAALLKAL 420 Query: 388 RYLEMA--SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + LN D D++A ++R A G+ITG + + LL IF+ FCIGK Sbjct: 421 EEINKVEEGLN-ADLSGDLLAIDIRQALHHFGEITGEITNDDLLGNIFANFCIGK 474 >gi|22537039|ref|NP_687890.1| tRNA modification GTPase TrmE [Streptococcus agalactiae 2603V/R] gi|76788077|ref|YP_329621.1| tRNA modification GTPase TrmE [Streptococcus agalactiae A909] gi|77410695|ref|ZP_00787054.1| tRNA modification GTPase TrmE [Streptococcus agalactiae CJB111] gi|32171818|sp|Q8CX13|MNME_STRA5 RecName: Full=tRNA modification GTPase mnmE gi|123601915|sp|Q3K1I2|MNME_STRA1 RecName: Full=tRNA modification GTPase mnmE gi|22533896|gb|AAM99762.1|AE014231_20 tRNA modification GTPase TrmE [Streptococcus agalactiae 2603V/R] gi|76563134|gb|ABA45718.1| tRNA modification GTPase TrmE [Streptococcus agalactiae A909] gi|77163231|gb|EAO74183.1| tRNA modification GTPase TrmE [Streptococcus agalactiae CJB111] Length = 458 Score = 209 bits (533), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 148/463 (31%), Positives = 258/463 (55%), Gaps = 30/463 (6%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLD-- 57 + E +TI A+ST AI I+R+SG ++ I + K + +L Y +D Sbjct: 3 ITKEFDTIAAISTPLGEGAIGIVRISGTDALKIASKIYRGKDLSAIQSHTLNYGHIVDPD 62 Query: 58 -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 ILD+ +L V +P++FT ED E + HGGIAV N IL+ + + R+A PGEF++R Sbjct: 63 KNEILDEVMLGVMLAPKTFTREDVIEINTHGGIAVTNEILQLILRH-GARMAEPGEFTKR 121 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NG++DL +AE++ DLI ++T+ ++++ + G L +L ++ + + +E ++ Sbjct: 122 AFLNGRVDLTQAEAVMDLIRAKTDKAMDIAVKQLDGSLKTLINNTRQEILNTLAQVEVNI 181 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D+ E +DV+ ++ + + + + + + G+I+R G I+G N GKSSL Sbjct: 182 DYPEYDDVEEMTTTLMREKTQEFQALMENLLRTARRGKILREGLSTAIIGRPNVGKSSLL 241 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N L +++ AIVTDI GTTRDV+ ++++G +K+ DTAGIR+TDDIVEK G++R+ + Sbjct: 242 NNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLVDTAGIRDTDDIVEKIGVERSKKAL 301 Query: 297 ENADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTYTEEYDHL------ 342 E ADL+LL+ +NS + ++ K + I + K+DL E + L Sbjct: 302 EEADLVLLV--LNSSEPLTLQDRSLLELSKESNRIVLLNKTDLPQKI--EVNELPKNVIP 357 Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIP--SHKRHLYHLSQTVRYLEMASLNEK-D 399 IS E ++++ +I I + + S+ RH+ + + V L+ ++NE + Sbjct: 358 ISVLENENIDKIEERINDIFFDNAGMVEHDATYLSNARHISLIEKAVDSLK--AVNEGLE 415 Query: 400 CGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G+ D++ ++ LG+ITG ++L+ +FS+FC+GK Sbjct: 416 LGMPVDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 458 >gi|319744919|gb|EFV97251.1| tRNA modification GTPase TrmE [Streptococcus agalactiae ATCC 13813] Length = 469 Score = 209 bits (533), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 148/463 (31%), Positives = 259/463 (55%), Gaps = 30/463 (6%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLD-- 57 + E +TI A+ST AI I+R+SG ++ I + K ++ +L Y +D Sbjct: 14 ITKEFDTIAAISTPLGEGAIGIVRISGTDALKIASKIYRGKDLSAIQSHTLNYGHIVDPD 73 Query: 58 -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 ILD+ +L V +P++FT ED E + HGGIAV N IL+ + + R+A PGEF++R Sbjct: 74 KNEILDEVMLGVMLAPKTFTREDVIEINTHGGIAVTNEILQLILRH-GARMAEPGEFTKR 132 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NG++DL +AE++ DLI ++T+ ++++ + G L +L ++ + + +E ++ Sbjct: 133 AFLNGRVDLTQAEAVMDLIRAKTDKAMDIAVKQLDGSLKTLINNTRQEILNTLAQVEVNI 192 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D+ E +DV+ ++ + + + + + + G+I+R G I+G N GKSSL Sbjct: 193 DYPEYDDVEEMTTTLMREKTQEFQALMENLLRTARRGKILREGLSTAIIGRPNVGKSSLL 252 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N L +++ AIVTDI GTTRDV+ ++++G +K+ DTAGIR+TDDIVEK G++R+ + Sbjct: 253 NNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLVDTAGIRDTDDIVEKIGVERSKKAL 312 Query: 297 ENADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTYTEEYDHL------ 342 E ADL+LL+ +NS + ++ K + I + K+DL E + L Sbjct: 313 EEADLVLLV--LNSSEPLTLQDRSLLELSKESNRIVLLNKTDLPQKI--EVNELPENVIP 368 Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIP--SHKRHLYHLSQTVRYLEMASLNEK-D 399 IS E ++++ +I I + + S+ RH+ + + V L+ ++NE + Sbjct: 369 ISVLENENIDKIEERINDIFFDNAGMVEHDATYLSNARHISLIEKAVDSLK--AVNEGLE 426 Query: 400 CGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G+ D++ ++ LG+ITG ++L+ +FS+FC+GK Sbjct: 427 LGMPVDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 469 >gi|283797196|ref|ZP_06346349.1| tRNA modification GTPase TrmE [Clostridium sp. M62/1] gi|291075154|gb|EFE12518.1| tRNA modification GTPase TrmE [Clostridium sp. M62/1] gi|295090272|emb|CBK76379.1| tRNA modification GTPase trmE [Clostridium cf. saccharolyticum K10] gi|295115469|emb|CBL36316.1| tRNA modification GTPase trmE [butyrate-producing bacterium SM4/1] Length = 458 Score = 209 bits (533), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 154/462 (33%), Positives = 250/462 (54%), Gaps = 35/462 (7%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-------DG 58 +TI A+STG S I ++R+SG +V + I +K P RK S F + + Sbjct: 5 DTIAAISTGMTNSGIGVVRISGEDAVKVADRIFRK--PNGRKLSEEKTFTIHYGHIYDEN 62 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 ++D+ L+++ P S+T ED+ E HGG+ V+ ILE + K RLA PGEF++RAF Sbjct: 63 ELIDEVLVMLMRGPRSYTAEDTVEIDCHGGVLVMRKILETVVK-NGARLAEPGEFTKRAF 121 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG+IDL +AE++ D+I+++ + + S+ ++G +S + +KL + +FIE+ LD Sbjct: 122 LNGRIDLSQAEAVIDVINAKNDYALKSSVNQLNGAMSRKVKELREKLIYEIAFIESALDD 181 Query: 179 SEEEDVQNFSSKEVLNDILF-LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 E ++ + E+L++ L +K +I ++ G ++R G K VILG NAGKSSL N Sbjct: 182 PEHISLEGYP--EILHERLIPIKQEIEKLLATADNGRVVREGVKTVILGKPNAGKSSLMN 239 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 L ++ AIVTD+ GTTRD L ++ L G + I DTAGIR+TDDIVEK G+ + + Sbjct: 240 VLVGEERAIVTDVAGTTRDTLEENIRLHGISLNIIDTAGIRDTDDIVEKIGVDKARQIAD 299 Query: 298 NADLILLLK------EINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGL 351 +ADLI+ + + N ++ + + I + K+DL TE+ + TG+ + Sbjct: 300 DADLIIYVVDGSRPLDENDREIMELIRGRKAIVLLNKTDLEMLVTEKE---LEERTGQTV 356 Query: 352 EELINKIK---SILSNKFKKLPFS---------IPSHKRHLYHLSQTVRYLEMASLN-EK 398 + K + +L + ++L FS + ++ RH L + L + + E Sbjct: 357 IPVSAKEQKGIDVLEERIRELFFSGKIDFNDEVMITNVRHKTALREAYDSLLLVEKSIED 416 Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D + +L A LG I G + L++ IFSKFC+GK Sbjct: 417 QMPEDFFSIDLMNAYEELGTIVGEALEDDLVNEIFSKFCMGK 458 >gi|25010947|ref|NP_735342.1| tRNA modification GTPase TrmE [Streptococcus agalactiae NEM316] gi|77413158|ref|ZP_00789357.1| tRNA modification GTPase TrmE [Streptococcus agalactiae 515] gi|32171831|sp|Q8E5T7|MNME_STRA3 RecName: Full=tRNA modification GTPase mnmE gi|23095326|emb|CAD46537.1| unknown [Streptococcus agalactiae NEM316] gi|77160776|gb|EAO71888.1| tRNA modification GTPase TrmE [Streptococcus agalactiae 515] Length = 458 Score = 209 bits (533), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 148/463 (31%), Positives = 258/463 (55%), Gaps = 30/463 (6%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLD-- 57 + E +TI A+ST AI I+R+SG ++ I + K + +L Y +D Sbjct: 3 ITKEFDTIAAISTPLGEGAIGIVRISGTDALKIASKIYRGKDLSAIQSHTLNYGHIVDPD 62 Query: 58 -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 ILD+ +L V +P++FT ED E + HGGIAV N IL+ + + R+A PGEF++R Sbjct: 63 KNEILDEVMLGVMLAPKTFTREDVIEINTHGGIAVTNEILQLILRH-GARMAEPGEFTKR 121 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NG++DL +AE++ DLI ++T+ ++++ + G L +L ++ + + +E ++ Sbjct: 122 AFLNGRVDLTQAEAVMDLIRAKTDKAMDIAVKQLDGSLKTLINNTRQEILNTLAQVEVNI 181 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D+ E +DV+ ++ + + + + + + G+I+R G I+G N GKSSL Sbjct: 182 DYPEYDDVEEMTTTLMREKTQEFQALMENLLRTARRGKILREGLSTAIIGRPNVGKSSLL 241 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N L +++ AIVTDI GTTRDV+ ++++G +K+ DTAGIR+TDDIVEK G++R+ + Sbjct: 242 NNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLVDTAGIRDTDDIVEKIGVERSKKAL 301 Query: 297 ENADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTYTEEYDHL------ 342 E ADL+LL+ +NS + ++ K + I + K+DL E + L Sbjct: 302 EEADLVLLV--LNSSEPLTLQDRSLLELSKESNRIVLLNKTDLPQKI--EVNELPENVIP 357 Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIP--SHKRHLYHLSQTVRYLEMASLNEK-D 399 IS E ++++ +I I + + S+ RH+ + + V L+ ++NE + Sbjct: 358 ISVLENENIDKIEERINDIFFDNAGMVEHDATYLSNARHISLIEKAVDSLK--AVNEGLE 415 Query: 400 CGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G+ D++ ++ LG+ITG ++L+ +FS+FC+GK Sbjct: 416 LGMPVDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 458 >gi|77406399|ref|ZP_00783459.1| tRNA modification GTPase TrmE [Streptococcus agalactiae H36B] gi|77174990|gb|EAO77799.1| tRNA modification GTPase TrmE [Streptococcus agalactiae H36B] Length = 458 Score = 209 bits (533), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 147/458 (32%), Positives = 256/458 (55%), Gaps = 30/458 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLD---GRIL 61 +TI A+ST AI I+R+SG ++ I + K + +L Y +D IL Sbjct: 8 DTIAAISTPLGEGAIGIVRISGTDALKIASKIYRGKDLSAIQSHTLNYGHIVDPDKNEIL 67 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121 D+ +L V +P++FT ED E + HGGIAV N IL+ + + R+A PGEF++RAF NG Sbjct: 68 DEVMLGVMLAPKTFTREDVIEINTHGGIAVTNEILQLILRH-GARMAEPGEFTKRAFLNG 126 Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181 ++DL +AE++ DLI ++T+ ++++ + G L +L ++ + + +E ++D+ E Sbjct: 127 RVDLTQAEAVMDLIRAKTDKAMDIAVKQLDGSLKTLINNTRQEILNTLAQVEVNIDYPEY 186 Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 +DV+ ++ + + + + + + G+I+R G I+G N GKSSL N L + Sbjct: 187 DDVEEMTTTLMREKTQEFQALMENLLRTARRGKILREGLSTAIIGRPNVGKSSLLNNLLR 246 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 ++ AIVTDI GTTRDV+ ++++G +K+ DTAGIR+TDDIVEK G++R+ +E ADL Sbjct: 247 EEKAIVTDIEGTTRDVIEEYVNIKGVPLKLVDTAGIRDTDDIVEKIGVERSKKALEEADL 306 Query: 302 ILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTYTEEYDHL------ISSFT 347 +LL+ +NS + ++ K + I + K+DL E + L IS Sbjct: 307 VLLV--LNSSEPLTLQDRSLLELSKESNRIVLLNKTDLPQKI--EVNELPKNVIPISVLE 362 Query: 348 GEGLEELINKIKSILSNKFKKLPFSIP--SHKRHLYHLSQTVRYLEMASLNEK-DCGL-- 402 E ++++ +I I + + S+ RH+ + + V L+ ++NE + G+ Sbjct: 363 NENIDKIEERINDIFFDNAGMVEHDATYLSNARHISLIEKAVDSLK--AVNEGLELGMPV 420 Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D++ ++ LG+ITG ++L+ +FS+FC+GK Sbjct: 421 DLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 458 >gi|39998554|ref|NP_954505.1| tRNA modification GTPase TrmE [Geobacter sulfurreducens PCA] gi|81700815|sp|Q746Q3|MNME_GEOSL RecName: Full=tRNA modification GTPase mnmE gi|39985501|gb|AAR36855.1| tRNA modification GTPase TrmE [Geobacter sulfurreducens PCA] gi|298507496|gb|ADI86219.1| tRNA (5-carboxymethylaminomethyl-2-thio-U34) modification GTPase [Geobacter sulfurreducens KN400] Length = 456 Score = 209 bits (532), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 143/457 (31%), Positives = 237/457 (51%), Gaps = 25/457 (5%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG-----LDGR 59 ++TI A+ST A + I+R+SGP + + ++ + S R+++G + G Sbjct: 4 EDTIAAISTAAGEGGVGIVRVSGPDAPSIARRVFRRGSNGDFE-SHRFYYGSVVDAVTGE 62 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 +D+ + ++ P S+T ED E HGG V +LE L RLA PGEF+RRAF Sbjct: 63 AVDEAMAVLMVRPRSYTREDVLEIQCHGGYLVTRRVLE-LVLAAGARLAEPGEFTRRAFL 121 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NG+IDL++AE++ D+I ++T+ L+ G LS + +L + +EA +DF Sbjct: 122 NGRIDLVQAEAVIDVIRAKTDAALALAQHQRQGRLSQRLDTVMAELRQALALVEAFIDFP 181 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 E+ D+ + + + + I+ G ++R G ++I G N GKSSL N L Sbjct: 182 ED-DIDPAAQDALTVHVRKAAETVGELIAGFDEGRVLREGVAVLIAGKPNVGKSSLLNTL 240 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 ++ AIVT +PGTTRD++ +++ G +++ DTAGIR+T+DIVEKEG++ T ++ A Sbjct: 241 LQEKRAIVTSVPGTTRDIIEEVVNIRGLPLRMIDTAGIRDTEDIVEKEGVRLTLEKIPEA 300 Query: 300 DLILLL------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL-------ISSF 346 DL+LL+ + + + +S I + K DL + D L +S+ Sbjct: 301 DLVLLVIDGSRPLDEDDRMILSALAGKRLILVENKCDL-PRAVQIPDELVLMPRVTVSTS 359 Query: 347 TGEGLEELINKI--KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLD 403 G+G++EL I I + S RH LS++ +L L+ Sbjct: 360 RGDGIDELKESIFQTFIHGAAIDSREYVAVSRVRHRDLLSRSTMHLTAFEQGLASGFTLE 419 Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++A LR A ++G++TG + +LD+IF +FCIGK Sbjct: 420 LLAVELRDALAAVGEVTGETTPDDILDVIFDRFCIGK 456 >gi|312867712|ref|ZP_07727918.1| tRNA modification GTPase TrmE [Streptococcus parasanguinis F0405] gi|311096775|gb|EFQ55013.1| tRNA modification GTPase TrmE [Streptococcus parasanguinis F0405] Length = 457 Score = 209 bits (532), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 147/462 (31%), Positives = 259/462 (56%), Gaps = 28/462 (6%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKAS--LRYFFGLD- 57 + E +TI A+ST AI I+RLSG F + + I K K+ + AS L Y +D Sbjct: 2 ITKEFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKE-LSKVASHTLNYGHIVDP 60 Query: 58 --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 ILD+ ++ SP++FT ED E + HGGIAV N IL+ L RLA PGEF++ Sbjct: 61 DKDEILDEVMVGAMRSPKTFTREDIIEINTHGGIAVTNEILQ-LVIREGARLAEPGEFTK 119 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG++DL +AE++ D+I ++T+ ++++ + G LS L ++ + + +E + Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 179 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +D+ E +DV+ +++ + + +++ + + G+I+R G I+G N GKSSL Sbjct: 180 IDYPEYDDVEEATTEIIREKTREFEALLTNLLKTARRGKILREGISTAIIGRPNVGKSSL 239 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N L +++ AIVTDI GTTRDV+ +++ G +K+ DTAGIRET+DI+E+ G++R+ Sbjct: 240 LNNLLREEKAIVTDIEGTTRDVIEEYVNINGVPLKLVDTAGIRETEDILEQIGVERSKKA 299 Query: 296 VENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------I 343 ++ ADL+LL+ + ++ + ++ + I + K DL E D L I Sbjct: 300 LKEADLVLLVLNASEPLTDQDRQLLEISQDSNRIILLNKVDLPEKI--EIDQLPEDYIKI 357 Query: 344 SSFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK--- 398 S + ++++ ++I ++ + + + S+ RH+ + + V L+ ++NE Sbjct: 358 SVLKNQNIDQIEDRINALFFENAGLVEQDATYLSNARHISLIEKAVESLQ--AVNEGLAL 415 Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+ITG ++L+ +FS+FC+GK Sbjct: 416 GMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 457 >gi|329115888|ref|ZP_08244605.1| tRNA modification GTPase TrmE [Streptococcus parauberis NCFD 2020] gi|326906293|gb|EGE53207.1| tRNA modification GTPase TrmE [Streptococcus parauberis NCFD 2020] Length = 458 Score = 209 bits (532), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 144/463 (31%), Positives = 257/463 (55%), Gaps = 30/463 (6%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLD-- 57 + E +TI A+ST AI I+RLSG + + + K K + ++ Y LD Sbjct: 3 ITKEFDTITAISTPLGEGAIGIVRLSGSQALDIAKSVFKGKDLASVASHTINYGHILDPD 62 Query: 58 -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 ILD+ ++ V P++FT ED E + HGGIAV N IL+ L K R+A PGEF++R Sbjct: 63 KDEILDEVMVSVMREPKTFTREDVVEINTHGGIAVTNEILQLLIKH-GARMAEPGEFTKR 121 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NG++DL +AE++ D+I ++T+ ++++ + G L L ++ + + +E ++ Sbjct: 122 AFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLKQLIDDTRQEILNTLAQVEVNI 181 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D+ E +DV+ ++ + + + + + + G+I+R G I+G N GKSSL Sbjct: 182 DYPEYDDVEEMTTALMREKTQEFQTLLENLLRTARRGKILREGLSTAIIGRPNVGKSSLL 241 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N L +++ AIVTDI GTTRDV+ ++++G +K+ DTAGIR+T+DIVEK G++R+ + Sbjct: 242 NNLLREEKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAGIRDTEDIVEKIGVERSKKAL 301 Query: 297 ENADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTYTEEYDHL------ 342 ADL+LL+ +N+ ++++ ++ + I + K+DL E D L Sbjct: 302 NEADLVLLV--LNASEKLTEQDHILLDLSQDSNRIILLNKTDLEVQI--EKDQLPSDYIE 357 Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIP--SHKRHLYHLSQTVRYLEMASLNEK-- 398 IS E ++++ ++I + + + S+ RH+ + + V+ L+ ++N+ Sbjct: 358 ISVLNNENIDQIEDRINQLFFDNAGLVEHDATYLSNARHISLIEKAVQSLQ--AVNDGLA 415 Query: 399 -DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ +L LG+ITG ++L+ +FS+FC+GK Sbjct: 416 LGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK 458 >gi|161833721|ref|YP_001597917.1| tRNA modification GTPase TrmE [Candidatus Sulcia muelleri GWSS] gi|293977831|ref|YP_003543261.1| tRNA modification GTPase TrmE [Candidatus Sulcia muelleri DMIN] gi|205415809|sp|A8Z5X0|MNME_SULMW RecName: Full=tRNA modification GTPase mnmE gi|152206211|gb|ABS30521.1| tRNA modification GTPase TrmE [Candidatus Sulcia muelleri GWSS] gi|292667762|gb|ADE35397.1| tRNA modification GTPase TrmE [Candidatus Sulcia muelleri DMIN] Length = 454 Score = 209 bits (532), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 158/459 (34%), Positives = 248/459 (54%), Gaps = 34/459 (7%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQV-----CEFICKKKKPFPRKASLRYFFGLDGRI 60 +TI A++T + AI++IR+SG + ++ C F K + L Y +I Sbjct: 6 DTIVAIATPSGYGAIAVIRISGNNSIKIIKKIFCSF--SKNQIETNYIHLGYI-KYKKQI 62 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +DK L+ +F P+S+TGED E HG I + N +L + RLANPGEF+ RAF N Sbjct: 63 IDKVLIFLFKKPKSYTGEDIVEISCHGSIYIQNKLLSIIID-QGARLANPGEFTLRAFLN 121 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GKIDL +AES+ D+++SET + ++ M G +S L + ++ ++ S IE +LDFSE Sbjct: 122 GKIDLCQAESILDIVNSETFFSHKFAINQMRGNISLLIRKLSKEIINLLSLIEFELDFSE 181 Query: 181 EED--VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E + K++L +I+ + + I K+G ++NG + I+G N GKS+LFN Sbjct: 182 ENCNFINYLEFKKMLYNII---KKLKTLIRSFKIGNALKNGISVSIIGCPNVGKSTLFNK 238 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RETDDIVEKEGIKRTFLEVE 297 L K + +IV++I GTTR+ + L + G + DTAGI T D +EK GIK+T+ ++ Sbjct: 239 LLKYERSIVSNIAGTTRNYIEDSLIINGIKFRFIDTAGINNNTKDYIEKLGIKKTYSKIN 298 Query: 298 NADLIL----------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH----LI 343 +DLIL +LK++ S +E +PK I K DL +E+++ I Sbjct: 299 KSDLILYVFDDLNEKFILKKVKSLQE-KYPKKKI-FIIINKYDLIKKKIKEFNYKKIFKI 356 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFS--IPSHKRHLYHLSQTVRYLEMASLNEKDCG 401 S+ G G+ L+++I + S K L + + + RH + + YL N Sbjct: 357 SAKYGYGVNNLLSEI-TFFSKKITSLKENTIVITQTRHYESFKKAIFYLYKVKKNLYSIS 415 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + ++ ++R A LGK+TG V E +L IFSKFCIGK Sbjct: 416 PEFLSIDIRTALDYLGKVTGEVTNEDILSNIFSKFCIGK 454 >gi|77407969|ref|ZP_00784719.1| tRNA modification GTPase TrmE [Streptococcus agalactiae COH1] gi|77173427|gb|EAO76546.1| tRNA modification GTPase TrmE [Streptococcus agalactiae COH1] Length = 458 Score = 209 bits (532), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 148/463 (31%), Positives = 258/463 (55%), Gaps = 30/463 (6%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLD-- 57 + E +TI A+ST AI I+R+SG ++ I + K + +L Y +D Sbjct: 3 ITKEFDTIAAISTPLGEGAIGIVRISGTDALKIASKIYRGKDLSAIQSHTLNYGHIVDPD 62 Query: 58 -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 ILD+ +L V +P++FT ED E + HGGIAV N IL+ + + R+A PGEF++R Sbjct: 63 KNEILDEVMLGVMLAPKTFTREDVIEINTHGGIAVTNEILQLILRH-GARMAEPGEFTKR 121 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NG++DL +AE++ DLI ++T+ ++++ + G L +L ++ + + +E ++ Sbjct: 122 AFLNGRVDLTQAEAVMDLIRAKTDKAMDIAVKQLDGSLKTLINNTRQEILNTLAQVEVNI 181 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D+ E +DV+ ++ + + + + + + G+I+R G I+G N GKSSL Sbjct: 182 DYPEYDDVEEMTTTLMREKTQEFQALMENLLRTARHGKILREGLSTAIIGRPNVGKSSLL 241 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N L +++ AIVTDI GTTRDV+ ++++G +K+ DTAGIR+TDDIVEK G++R+ + Sbjct: 242 NNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLVDTAGIRDTDDIVEKIGVERSKKAL 301 Query: 297 ENADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTYTEEYDHL------ 342 E ADL+LL+ +NS + ++ K + I + K+DL E + L Sbjct: 302 EEADLVLLV--LNSSEPLTLQDRSLLELSKESNRIVLLNKTDLPQKI--EVNELPENVIP 357 Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIP--SHKRHLYHLSQTVRYLEMASLNEK-D 399 IS E ++++ +I I + + S+ RH+ + + V L+ ++NE + Sbjct: 358 ISVLENENIDKIEERINDIFFDNAGMVEHDATYLSNARHISLIEKAVDSLK--AVNEGLE 415 Query: 400 CGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G+ D++ ++ LG+ITG ++L+ +FS+FC+GK Sbjct: 416 LGMPVDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 458 >gi|281357768|ref|ZP_06244254.1| tRNA modification GTPase TrmE [Victivallis vadensis ATCC BAA-548] gi|281315715|gb|EFA99742.1| tRNA modification GTPase TrmE [Victivallis vadensis ATCC BAA-548] Length = 442 Score = 209 bits (532), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 147/447 (32%), Positives = 234/447 (52%), Gaps = 21/447 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 + I A +TG + AI+I+RLSGP + + + + G G D L Sbjct: 5 DNIAAPATG-IGGAITILRLSGPDALAIGGRVWRSRTSLAEAPPRTMLLGKVGP--DPAL 61 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + +P S+TG+D E H HGG A L+ L R+A PGEF+ RAF NGK+DL Sbjct: 62 AVYMKAPASYTGDDVVELHCHGGAAAAEQALK-LVLASGCRMAEPGEFTFRAFVNGKLDL 120 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 ++AE++ D+IS+ ++M +L+ + ++G LSS ++L ++R+ E+ LDF +EE Sbjct: 121 VQAEAVGDVISAGSDMAFKLAEKQLAGALSSRLETLYEELNNLRAEAESHLDFPDEELAW 180 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 + V I + N++ ++ +G +R+G +VI G NAGKSSL N L + A Sbjct: 181 E---EGVPERIRAVANELKRLLATRGIGATLRDGVNLVIAGRPNAGKSSLLNRLLGMERA 237 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVT IPGTTRD + L G V+++DTAGIR + D +E+ G++R+ +E A + L Sbjct: 238 IVTSIPGTTRDTIEASTVLRGLPVRLTDTAGIRSSSDPIEQLGVERSRRSIEGAQVTFWL 297 Query: 306 KEINSKK------EISFPKNIDFIFIGTKSDLYSTYT-EEYDH---LISSFTGEGLEELI 355 + + + E++ I + K DL E D IS+ TGEG+E+L+ Sbjct: 298 LDASGDELDLELAEMARHPAPGRIAVWNKLDLAPQRALPELDGPTVRISAKTGEGIEKLL 357 Query: 356 NKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG-LDIIAENLRLAS 413 + + + +LP + + RH L + L A+ + +CG ++ LR A Sbjct: 358 DAFAREAVDTPRPELP-EVAVNARHARLLEEAAGLLPDAAAH-FECGEFELAGLMLRDAL 415 Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++G+I G +LD IFS+FCIGK Sbjct: 416 HTVGEIIGKTVEPDILDNIFSRFCIGK 442 >gi|226326138|ref|ZP_03801656.1| hypothetical protein COPCOM_03957 [Coprococcus comes ATCC 27758] gi|225205680|gb|EEG88034.1| hypothetical protein COPCOM_03957 [Coprococcus comes ATCC 27758] Length = 459 Score = 209 bits (531), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 157/463 (33%), Positives = 244/463 (52%), Gaps = 27/463 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF----PRKASLRYFFGL 56 M + +TI A+ST S I I+RLSG F + + I K K P + ++ Y + + Sbjct: 1 MGFKTDTIAAISTAMTNSGIGIVRLSGEDAFSIIDKIYKGKSPKLLSEQKSHTIHYGYIM 60 Query: 57 DG-RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 DG + +D+ L+++ P S+TGED+ E HGG+ V ILE + K R A PGEFS+ Sbjct: 61 DGEQTIDEVLVLLMRGPHSYTGEDTVEIDCHGGVFVTRKILETVIKY-GARPAEPGEFSK 119 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG++DL +AE++ D+ISS+ + + S+ + G + + + + + + +FIE+ Sbjct: 120 RAFLNGRMDLSQAEAVIDIISSKNDYALQSSVNQLKGSVHNKIKEIREVILYHTAFIESA 179 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 LD E V + +L + L+ I + G II+ G K VI+G NAGKSSL Sbjct: 180 LDDPEHISVDGYGDS-LLGVVKDLQQKIQCLLDTADDGRIIKEGIKTVIVGKPNAGKSSL 238 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N L ++ AIVT+I GTTRDVL ++ L+G + I DTAGIR+T DIVEK G+ + Sbjct: 239 MNVLVGEEKAIVTEIAGTTRDVLEENIQLQGVSLNIMDTAGIRDTSDIVEKIGVDKAKEN 298 Query: 296 VENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------- 342 E ADLI+ + + N + I ++ + + KSDL + ++ Sbjct: 299 AEKADLIIYVVDASRPLDENDHEIIEMIRDKKAVILLNKSDLSTVVDKKALETLITKPMI 358 Query: 343 -ISSFTGEGLEELINKIKSILSNKFKKLPFS---IPSHKRHLYHLSQTVRYLEMASLN-E 397 IS+ G+ EL + +K + + + F+ ++ RH L+ + L+ + E Sbjct: 359 DISAKEETGIHELESTLKEMFYH--GDISFNDEVYITNIRHKTALADALSSLKKVEESIE 416 Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D +L A SLG ITG E L++ IFSKFC+GK Sbjct: 417 NQMPEDFFTIDLMDAYESLGSITGETIGEDLVNEIFSKFCMGK 459 >gi|210614312|ref|ZP_03290160.1| hypothetical protein CLONEX_02374 [Clostridium nexile DSM 1787] gi|210150728|gb|EEA81737.1| hypothetical protein CLONEX_02374 [Clostridium nexile DSM 1787] Length = 457 Score = 209 bits (531), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 158/460 (34%), Positives = 245/460 (53%), Gaps = 31/460 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK----PFPRKASLRYFFGLDGR-I 60 +TI A++T S I I+R+SG F++ + I K KK + ++ Y + +DG Sbjct: 4 DTIAAIATAMTNSGIGIVRMSGDEAFEIIQKIYKGKKEKYFQEEKGYTIHYGYIVDGEET 63 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+ L+++ P SFTGED+ E + HGG+ V+ ILE + K R A PGEF++RAF N Sbjct: 64 IDEVLVMIMRGPHSFTGEDTVEINCHGGVYVMKRILETVIKY-GARPAEPGEFTKRAFLN 122 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G++DL +AE++ D+I S++E + S+ + G + + +++ + +FIE LD E Sbjct: 123 GRMDLSQAEAVIDVIHSKSEYALKSSVSQLKGTVHQKIKKIREEILYHTAFIETALDDPE 182 Query: 181 EEDVQNFSSK-EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 V + + +V+ D L + S G II+ G K VI+G NAGKSSL N L Sbjct: 183 HISVDGYGGELKVVVDKLLEELKALLISSDN--GRIIKEGIKTVIVGKPNAGKSSLLNVL 240 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 +D AIVTDI GTTRDVL + L+G + I DTAGIR T+DIVEK G+ + A Sbjct: 241 VGEDRAIVTDIEGTTRDVLEESIQLQGISLNIMDTAGIRNTEDIVEKIGVDKAKEHANEA 300 Query: 300 DLIL---------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLIS 344 DLI+ +++ I KK + D + +K D+ +Y E+ IS Sbjct: 301 DLIIYVVDASRNLDENDMEIIQMIQDKKAVILLNKSDLATVVSK-DMLKSYIEKPMIEIS 359 Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFS---IPSHKRHLYHLSQTVRYLEMASLN-EKDC 400 + G++EL +K + + + F+ ++ RH + LE +++ E + Sbjct: 360 AKEESGIKELEQTLKDMFFH--GDISFNDEVYITNIRHKAAIQDAYDSLEKVNMSIENNM 417 Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D + +L A SLG ITG E L++ IFSKFC+GK Sbjct: 418 PEDFYSIDLLDAYESLGSITGETIGEDLVNEIFSKFCMGK 457 >gi|46198870|ref|YP_004537.1| tRNA modification GTPase TrmE [Thermus thermophilus HB27] gi|81830635|sp|Q72K85|MNME_THET2 RecName: Full=tRNA modification GTPase mnmE gi|46196493|gb|AAS80910.1| thiophene and furan oxidation protein thdF [Thermus thermophilus HB27] Length = 433 Score = 209 bits (531), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 150/451 (33%), Positives = 240/451 (53%), Gaps = 29/451 (6%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD- 57 M ++ I A++T AI ++RLSG ++ + + K P K R+ G +D Sbjct: 1 MRALRDPICAIATPLGKGAIGVVRLSGEGALEIAARVWRGKDPRRLKGG-RFTLGEVVDP 59 Query: 58 --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 G +D+ LL+VF +P S+TGED EF HG +AV+ ++E L R A GEF+ Sbjct: 60 KTGEAIDQALLLVFRAPRSYTGEDLVEFQTHGSLAVLRRVMEVLVA-EGARPAGRGEFTF 118 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELS----SLYGQWIDKLTHIRSF 171 RA+ NGK+DL +AE++ LI +E E+ RR ++ + G LS +L + +D L HI++ Sbjct: 119 RAYMNGKLDLAQAEAVLALIEAEGELARRQALRALEGALSRRIEALENRLLDLLAHIQAL 178 Query: 172 IEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAG 231 LD+ EE V+ ++ L ++L ++ + ++Q K + + G ++ ++G NAG Sbjct: 179 ----LDYPEE-GVEPLEAERTLREVL---AEVEALLAQAKASRLAQKGARLALIGAPNAG 230 Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR 291 KSSL NAL + A+V+ IPGTTRD L L+L G + DTAG+RET+D VE+ G++R Sbjct: 231 KSSLLNALLGYERALVSPIPGTTRDYLEAPLELFGIPLVAVDTAGVRETEDPVERMGVER 290 Query: 292 TFLEVENADLILLLKEINSKKEISFPKNIDFIF-IGTKSDLYSTYTEEYDHLISSFTGEG 350 E ADL+L + + + K P + TKSDL + + +SS TGEG Sbjct: 291 ALRIAEEADLVLYVVDRSQPKPAPPPLPWARTLKVATKSDLPPAWEDPEFLPVSSLTGEG 350 Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDIIAENL 409 L L ++ L + + +R + L + LE A +L E D++ L Sbjct: 351 LGRLKEALREALLGREGG---EVLLTERQVEALLRARERLEEALALPE-----DLMGLAL 402 Query: 410 RLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A+ +L +TG E+++ +F FC+GK Sbjct: 403 EEAARALALLTGKEVAEEVVARVFQNFCVGK 433 >gi|261878772|ref|ZP_06005199.1| thiophene and furan oxidation protein ThdF [Prevotella bergensis DSM 17361] gi|270334631|gb|EFA45417.1| thiophene and furan oxidation protein ThdF [Prevotella bergensis DSM 17361] Length = 458 Score = 209 bits (531), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 153/465 (32%), Positives = 250/465 (53%), Gaps = 35/465 (7%) Query: 2 NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLR---YFFGL-- 56 ++ +TI A++T AI I+RLSGP + + + K + A + +GL Sbjct: 3 SYRNDTIVAIATPP-GGAIGILRLSGPEAISIITALFRPAKRGMKLADAQANTLHYGLLQ 61 Query: 57 --DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114 G +D ++ V+ +P S+TGED E HG ++ L L R A PGE++ Sbjct: 62 SAQGEDIDDVIVSVYRAPHSYTGEDCIEISCHGSAYILKQALHALIDA-GARQAQPGEYT 120 Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174 +RA+ NGK+DL +AE++ADLI+S E RL++ + G SS + +L + S IE Sbjct: 121 QRAYLNGKMDLSQAEAVADLIASTNEATHRLALSQLKGHFSSELSELRKQLLKMTSLIEL 180 Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQ----GKLGEIIRNGYKIVILGHSNA 230 +LDFS+ ED++ F+ ++ L+ L + IS+HI+ + G I+ G + I+G +N Sbjct: 181 ELDFSDHEDIE-FADRDELS---CLASTISNHITSLAQSFETGNAIKKGIPVTIIGKTNV 236 Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIK 290 GKS+L N L ++D AIV++I GTTRDV+ +D+ G + +DTAG+R T+D +E+ GI+ Sbjct: 237 GKSTLLNQLLREDKAIVSNIHGTTRDVIEDTIDIHGVTFRFTDTAGLRHTEDQIEQMGIE 296 Query: 291 RTFLEVENADLIL-LLKEINSKKEI----SFPKNIDFIFIGTKSDLYST----YTEEYDH 341 R + ++E A +IL ++ + ++ E+ S + I + K+DL T + + Sbjct: 297 RAYQKMEQAVIILWVVDQPPTEPELNDICSRAQGKKVIVVQNKADLAHTPLPPLPDSFSS 356 Query: 342 L-ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT----VRYLEMASLN 396 + IS+ G+GL EL I + I ++ RH L++ R +E LN Sbjct: 357 IAISAKYGQGLHELEEAIYAAADIPHLDPNSVIVTNARHYEALTRAHTGISRVIEGLGLN 416 Query: 397 EKDCGLDIIAENLRLASVSLGKIT-GCVDVEQLLDIIFSKFCIGK 440 D++AE+LR+ LG+IT G + + L IF FCIGK Sbjct: 417 LSG---DLLAEDLRICLEELGEITGGTITSNETLAHIFKNFCIGK 458 >gi|78187867|ref|YP_375910.1| tRNA modification GTPase TrmE [Chlorobium luteolum DSM 273] gi|123582460|sp|Q3B1B4|MNME_PELLD RecName: Full=tRNA modification GTPase mnmE gi|78167769|gb|ABB24867.1| tRNA modification GTPase trmE [Chlorobium luteolum DSM 273] Length = 473 Score = 209 bits (531), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 154/463 (33%), Positives = 250/463 (53%), Gaps = 33/463 (7%) Query: 8 IFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRY------FFGLDGR 59 I A++T A++I+R+SG F + + +KK K F +A+ + F +G Sbjct: 14 IAAIATPVGVGALAIVRMSGKGVFGIADRAFRKKSGKAFSFEAAEGFTAHVGTLFDGEG- 72 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 ++D+ + +VF +P SFT ED EF HGG VV +L L RLA PGEF+RRAF Sbjct: 73 MVDEVVALVFRAPSSFTMEDMVEFTCHGGPVVVRRVLAALLD-GGCRLAEPGEFTRRAFL 131 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NG+IDLL+AE++ ++I + T+ R ++ M G LS + + L + +E +LDFS Sbjct: 132 NGRIDLLQAEAIGEMIHARTDGAFRTAVTQMQGGLSRRLLEMREGLLQSCALLELELDFS 191 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 EE DV+ S +E+ +++ L+ ++S + + G ++ G VI G NAGKS+L N L Sbjct: 192 EE-DVEFQSREELRGEVIRLQTELSGLVDSYQHGRLLSEGVSTVIAGRPNAGKSTLLNKL 250 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 ++ +IV+ +PGTTRD + + + +++DTAG+RE+++ VE EGI+R++ ++ A Sbjct: 251 LGEERSIVSHMPGTTRDYIEECFVYDKTMFRLTDTAGLRESEEDVEHEGIERSYRKISEA 310 Query: 300 DLILLLKEINSK----KEISFPK------NIDFIFIGTKSDLYSTYTEEYDHL------- 342 DLIL + +++ + + +S I + K+DL L Sbjct: 311 DLILYMLDVSGEGFREEAVSAAALCAGHPEARMILLANKTDLVKDSALRIAALETAAGSP 370 Query: 343 ---ISSFTGEGLEELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMA-SLNE 397 +++ +GEG+EEL + S++ K S+ + RH L L A L E Sbjct: 371 VVPMAARSGEGIEELKLLMASMVEGLDKLHEASVLVTSLRHYEALRNASDALHNALGLIE 430 Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++IA LR A +G+ITG V E+LL+ IF +FCIGK Sbjct: 431 GGEATELIAFELRSALDYVGEITGKVVSEELLNTIFGQFCIGK 473 >gi|227873162|ref|ZP_03991453.1| tRNA modification GTP-binding protein TrmE [Oribacterium sinus F0268] gi|227840993|gb|EEJ51332.1| tRNA modification GTP-binding protein TrmE [Oribacterium sinus F0268] Length = 456 Score = 209 bits (531), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 163/472 (34%), Positives = 253/472 (53%), Gaps = 57/472 (12%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKAS--LRYFFGLDG-RIL 61 TI ++T + S I IIR+SG ++ I + K +P + S +RY F DG + + Sbjct: 4 TISGIATALVESGIGIIRISGSQAVEIAGKILRTKGGRPLDIRESHRIRYGFVFDGEKEI 63 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121 D+ L+ F +P+SFTGED+ E + HGGI ++ + + K R A PGEFS+RAF NG Sbjct: 64 DEVLVSTFLAPKSFTGEDTVEINCHGGILLMQKVFQATLK-AGARPAEPGEFSKRAFLNG 122 Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181 +IDL +AE++ADLI++++E R S+ + G L + ++ +FIEA LD E Sbjct: 123 RIDLSQAEAVADLIAAKSEDSIRSSLSLLQGSLKEKIKRMRSRILEDTAFIEAALDDPEH 182 Query: 182 EDVQNFSSK------EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 + FS + E+L+DI ++ H +G+L ++ G + VI+G NAGKSSL Sbjct: 183 ISLDGFSEQCQGHVEEILSDI----QELLKHQREGRL---LKEGIQTVIVGKPNAGKSSL 235 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N L K D AIV++IPGTTRD + D+ + + + DTAGIRET+DIVE+ G+ R Sbjct: 236 LNCLVKADKAIVSNIPGTTRDTVEEDIRIGSLSLHLIDTAGIRETEDIVEEIGVNRAKEG 295 Query: 296 VENADLILLL------KEINSKKEISFPKNIDFIFIGTKSDLYSTYT-EEYDHL------ 342 +E AD +LL+ E +K ++ + + + K D S EE + L Sbjct: 296 IEKADCVLLVLDGSLPLEEEDRKILALLEGKKAVVLLNKMDKESILQKEELEKLSGFPVL 355 Query: 343 -ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401 IS+ G G+EEL K++ + L FS ++ H + ++A+L E Sbjct: 356 PISAKEGRGMEELGQKLEELFYT--GSLSFSTETY----IHSER-----QIAALEEAKSA 404 Query: 402 LDIIAENLRL-------------ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L+++ E +RL A +LG+I G E L++ IF+KFC+GK Sbjct: 405 LELVLEGIRLKLSEDFLSIDLMGAYSALGRILGEDVSEDLINEIFAKFCMGK 456 >gi|332293385|ref|YP_004431994.1| tRNA modification GTPase TrmE [Krokinobacter diaphorus 4H-3-7-5] gi|332171471|gb|AEE20726.1| tRNA modification GTPase TrmE [Krokinobacter diaphorus 4H-3-7-5] Length = 462 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 156/466 (33%), Positives = 250/466 (53%), Gaps = 37/466 (7%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK--KKPFPRKASLRYFFG--LDG-R 59 ++TI A+++ A AI++IR+SG ++ I K K + + G +DG R Sbjct: 4 QDTIVALASPAGAGAIAVIRVSGAQALEITSPIFKSVSGKVLSEQKTHTIHLGHIMDGER 63 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 +D+ L+ +F S+TGE + E HG + I++ L + R A GEF+ R+F Sbjct: 64 TIDEVLVSLFKGTNSYTGEPTVEISCHGSNYIQQEIIQLLLR-SGCRAAQAGEFTLRSFI 122 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NGK+DL +AE++ADLI+S+ E ++M+ M G S+ Q +L + S IE +LDFS Sbjct: 123 NGKMDLSQAEAVADLIASDNEASHHIAMQQMRGGFSNEIAQLRQELLNFASLIELELDFS 182 Query: 180 EEEDVQNFSSKEVLNDIL-----FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234 EE DV+ F+ + +++ LK I S + G +I+NG + I+G N GKS+ Sbjct: 183 EE-DVE-FADRSQFKELIARITKVLKRLIDSFAT----GNVIKNGIPVAIVGEPNVGKST 236 Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294 L NAL ++ AIV+DI GTTRD + +L + G + DTAGIRET D++E GIK+TF Sbjct: 237 LLNALLNEERAIVSDIAGTTRDTIEDELSIGGIGFRFIDTAGIRETVDVIEGLGIKKTFE 296 Query: 295 EVENADLILLLKEINS--------KKEISFPKN----IDFIFIGTKSDLYS-TYTEEYD- 340 +++ A +++LL N K EI KN + + K D S + +E Sbjct: 297 KIKQAQVVILLFSANEFLANGATFKTEIEKIKNKFPLKPLVIVANKVDQVSESDVKEISN 356 Query: 341 -----HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL 395 HL+S+ +G++EL K+ ++ + +I ++ RH L + + +E Sbjct: 357 QIPNLHLLSAKENKGVDELKTKLLEFVNTGALRNDETIVTNSRHYDALLKALEEIEKVQY 416 Query: 396 N-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + D D++A ++R A G+ITG V ++LL IF+ FCIGK Sbjct: 417 GLDTDLSGDLMAIDIREALYHFGEITGQVTNDELLGNIFANFCIGK 462 >gi|289524240|ref|ZP_06441094.1| tRNA modification GTPase TrmE [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502896|gb|EFD24060.1| tRNA modification GTPase TrmE [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 462 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 154/462 (33%), Positives = 240/462 (51%), Gaps = 37/462 (8%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF----PRKASLRYFFGLD--GR 59 +TI ++ST + I+I+RLSGP + E + KP PR +R F LD G Sbjct: 11 DTIASISTAWGEAGIAIVRLSGPQALDIAEKAFRGIKPLKDTPPR--YMRNGFLLDERGA 68 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 +D+ L + F +P+S+TGED E H HGG+ V + LE L RLA PGEF++RAF Sbjct: 69 PIDEVLGVWFRAPKSYTGEDVVEIHCHGGLLVASKCLELLTAQ-GARLAEPGEFTQRAFL 127 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NG+IDL +AE++ +I ++++ + + GELS+ D L +I + +EA+LDF Sbjct: 128 NGRIDLTQAEAVLGVIRAKSDEALLSAARTLRGELSARVNGIYDSLLNISATLEANLDFP 187 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 EE D+ S ++ + + ++ I + K+G+ +R+G K+ I+G N GKSS+FNAL Sbjct: 188 EE-DIPYLSQDDLFQSLKAIALNLQDVIYRCKVGKALRDGIKVAIVGRPNVGKSSIFNAL 246 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 ++ AIVT IPGTTRD++ + G + DTAG+R TDD+VE G+ + A Sbjct: 247 LEETRAIVTPIPGTTRDIIEGSIVHRGIPIIFMDTAGLRATDDLVETIGVSMAQKALREA 306 Query: 300 DLILLL---KEINSKKEISFP---KNIDFIFIGTKSDLYSTYT---------EEYDHLIS 344 DL L + E +K+EI KN I K+D+ + E ++S Sbjct: 307 DLRLWIIDGSEQLTKEEIDMAMELKNHSHIVAINKADIPQVISLEDVKQMLPESEIMVLS 366 Query: 345 SFTGEGLEELINKI------KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398 S+ E + EL +I S ++ F I + K L + ++ L Sbjct: 367 SYDKEAIGELKERIVKKLFKDSAINEGFNATARQIETLKSVLSCVENSISSLASGEPQ-- 424 Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D++A NL A + ++ G E L+ +IFS+FC+GK Sbjct: 425 ----DLVASNLLEARYYIDRLLGRNFDEDLIHLIFSQFCVGK 462 >gi|268318299|ref|YP_003292018.1| tRNA modification GTPase TrmE [Rhodothermus marinus DSM 4252] gi|262335833|gb|ACY49630.1| tRNA modification GTPase TrmE [Rhodothermus marinus DSM 4252] Length = 462 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 154/466 (33%), Positives = 248/466 (53%), Gaps = 30/466 (6%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFP-RKASLRYFFGLD 57 M +TI A++T +A++I+RLSGP ++ F + P A Y D Sbjct: 1 MRQRGDTIAAIATARGRAALAIVRLSGPEACRIAAACFRGADLQAVPSHTAHFGYVLSPD 60 Query: 58 GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 G +D+ + VF +P S+TGED E HGG ILE L RLA PGEF+ RA Sbjct: 61 GEPIDQVVATVFRTPRSYTGEDVVELTCHGGDLAPQLILETLLHH-GARLAEPGEFTLRA 119 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NGK+DL +AE++ADLI + + R+S+ + G S + L + +++E +LD Sbjct: 120 FLNGKLDLAQAEAVADLIHAGSTRAHRVSLAHLQGRYSEQLQRLRSDLLELCAYVELELD 179 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQG-KLGEIIRNGYKIVILGHSNAGKSSLF 236 FS+E DV+ F+ + L +L + + + +LGE++R+G ++VI G NAGKS+L Sbjct: 180 FSDE-DVE-FADRAQLEALLDRTGRLLDELLRSYRLGELLRDGVRVVIGGRPNAGKSTLL 237 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 NAL +D AIV+ +PGTTRD + + ++EG + DTAG+R T D +E EG++R + Sbjct: 238 NALLGQDRAIVSPVPGTTRDQIEAEAEIEGLRFRFVDTAGLRATADEIEAEGVRRAQQAI 297 Query: 297 ENADLILLLKEIN---SKKEISF-------PKNIDFIFIGTKSDLYSTYTE--EYDHLIS 344 A++++ + ++ + E ++ + I +G K DL + E D + Sbjct: 298 AAAEVLVYVFDLTVGLAPDEQAYLTRLRTEQPALPVIVVGNKRDLLDSAPELLALDRPVL 357 Query: 345 SFTGEG-------LEELINKIKSILSNKFKKLPFS-IPSHKRHLYHLSQTVRYLEMASLN 396 + + L+ L+ ++ + ++ + S + ++RH HL++ R A+ Sbjct: 358 ALSARRAREDAAELQPLVRELVAAVTADLGSMDDSAVVMNQRHRQHLARA-REAVQAARA 416 Query: 397 EKDCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D GL D++A LR A LG ITG + E +LD IFS+FCIGK Sbjct: 417 ALDQGLSGDLLALELRRALHELGAITGEITTEDVLDQIFSRFCIGK 462 >gi|256848511|ref|ZP_05553953.1| tRNA modification GTPase TrmE [Lactobacillus coleohominis 101-4-CHN] gi|256714778|gb|EEU29757.1| tRNA modification GTPase TrmE [Lactobacillus coleohominis 101-4-CHN] Length = 462 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 154/463 (33%), Positives = 255/463 (55%), Gaps = 27/463 (5%) Query: 2 NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LDGR 59 N E +TI A+ST ISIIR+SG V + + K K + AS +G +D + Sbjct: 3 NSEFDTITAISTPVGEGGISIIRVSGEEAIPVVKKLFKGKD-LAKVASHTINYGHIIDPQ 61 Query: 60 I---LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 +D+ ++ V +P+++T ED E + HGG+ N IL+ L R+A PGEF++R Sbjct: 62 TNQEVDEVMVSVMRAPKTYTKEDVVEINCHGGLLATNRILQ-LTIGAGARMAEPGEFTKR 120 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NG++DL +AE++ DLI ++T+ ++++ + G LS L + + + +E ++ Sbjct: 121 AFLNGRLDLSQAEAVMDLIRAKTDKSMKVALNQLDGNLSHLIKHLRKDILDVLAQVEVNI 180 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D+ E + V+ +SK + + ++ I + K G+++R+G I+G N GKSSL Sbjct: 181 DYPEYDAVEEMTSKLLREKAIEIRQRIEGLLKTAKQGKVLRDGLATAIIGRPNVGKSSLL 240 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N+L +D AIVT++ GTTRDV+ +++ +K+ DTAGIR TDD VEK G++R+ + Sbjct: 241 NSLLHEDKAIVTNVAGTTRDVIEEYVNVNDVPLKLIDTAGIRHTDDTVEKIGVERSRQAI 300 Query: 297 ENADLILLLKEINS------KKEISFPKNIDFIFIGTKSDLYSTYTEEY-------DHLI 343 + ADLILLL + + ++ I+ N I I KSDL + ++ D +I Sbjct: 301 DTADLILLLIDSSQPLTKEDQQLIAQTANKPRIIIFNKSDLPTKVDQDKLQALVDGDKVI 360 Query: 344 S-SFTG-EGLEELINKIKSILSNKF--KKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399 + S T EG++EL I + N+ + ++ RH+ L Q + L L D Sbjct: 361 TASMTKHEGIDELSAAISHLFFNEGIESNQNNVMVTNARHIGLLRQADQALGDV-LKGLD 419 Query: 400 CGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G+ D++ ++ A LG+ITG ++LLD +FS+FC+GK Sbjct: 420 DGMPVDLVQIDMTRAWDLLGEITGDSYQDELLDQLFSQFCLGK 462 >gi|15839367|ref|NP_300055.1| tRNA modification GTPase TrmE [Xylella fastidiosa 9a5c] gi|14195286|sp|Q9P9U3|MNME_XYLFA RecName: Full=tRNA modification GTPase mnmE gi|9108024|gb|AAF85563.1|AE004083_2 thiophene and furan oxidation protein [Xylella fastidiosa 9a5c] Length = 451 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 147/434 (33%), Positives = 226/434 (52%), Gaps = 19/434 (4%) Query: 20 ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGED 79 I IIRLSG S + PR A F + ++D GL + FP+P SFTGED Sbjct: 24 IGIIRLSG-SLIKTIATGLGMTTLRPRYAHYTRFLDVQDEVIDDGLALWFPAPHSFTGED 82 Query: 80 SAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET 139 E HG ++ +L + R A+PGEFS RAF NGK+DL++AE++AD+I + Sbjct: 83 VLELQGHGSPLLLRQLLTRCLDL-GARQAHPGEFSERAFLNGKLDLIQAEAIADMIGAAD 141 Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFL 199 R + + G S +L +R +EA +DF+EE + ++ + L Sbjct: 142 LRAARAARRSLDGVFSRRCEALAQQLIRLRIHVEATIDFAEES-LDTLDRAQIRTSLQTL 200 Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259 +++ + + G+ + +G V++G N GKSSL NAL D AIVTD+PGTTRD L Sbjct: 201 NVELTQLLRDAEHGKRLCDGLYTVLVGPPNVGKSSLLNALIGSDRAIVTDVPGTTRDTLR 260 Query: 260 IDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL-----KEINS---- 310 + G + DTAG+RE D +E+EG++RT E++ ADL L++ +I S Sbjct: 261 ESVHFHGLEFVLVDTAGLREEGDAIEREGMRRTLNELQRADLALVVLDACDPQIGSLALA 320 Query: 311 KKEISFPKNIDFIFIGTKSDLYSTYTEEYDH---LISSFTGEGLEELINKIKSILSNK-F 366 S P+ ++I K DL + D +S+ TG GLE L +++++L + Sbjct: 321 DALTSVPR---VLWIHNKLDLLTEPPSALDTDVIPVSAMTGAGLETLKTRLRTLLLGETV 377 Query: 367 KKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVE 426 + + + RH+ L +T ++ A+ L++ AE LRLA +LG+I G + + Sbjct: 378 ETIEGEFSARLRHVQALQRTAAHVTDANAQFAYEHLELTAEELRLAYKALGEINGSMSPD 437 Query: 427 QLLDIIFSKFCIGK 440 +LL IFS FCIGK Sbjct: 438 ELLGRIFSNFCIGK 451 >gi|154173921|ref|YP_001408433.1| tRNA modification GTPase TrmE [Campylobacter curvus 525.92] gi|205829128|sp|A7GYZ1|MNME_CAMC5 RecName: Full=tRNA modification GTPase mnmE gi|112802942|gb|EAU00286.1| tRNA modification GTPase TrmE [Campylobacter curvus 525.92] Length = 444 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 142/450 (31%), Positives = 241/450 (53%), Gaps = 17/450 (3%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 ++ + + I A++T +I IIRLSG + Q + K PR A+L + LD Sbjct: 2 ISSKNDDIAAIATAHGIGSICIIRLSGSTALQSALKLTKISNLSPRLATLTKIYSLDKEF 61 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+ ++I F +P SFTGED EFH HGG V + IL EL K+ +RLA PGEFS+RAF N Sbjct: 62 LDEAIMIYFKAPASFTGEDVVEFHTHGGFVVADMILNELVKL-GVRLAEPGEFSKRAFLN 120 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ LI+S +E ++ M G+LS Q ++L +F+E +D+++ Sbjct: 121 DKLDLAKAEAIQGLINSRSEAAAKILARQMRGDLSRYVEQMRNELVKTLAFVETSIDYAD 180 Query: 181 EEDVQNFSSK-EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 ++ + + + + + K D IS+ + G I +G+K+ I+G N GKSS+ N+L Sbjct: 181 DDLPDDLLEQIKTMLEANAAKLDKIVQISEQRRGLI--DGFKVAIVGKPNVGKSSILNSL 238 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 + AI++D GTTRD + + + +LV+I DTAGIR+ +EK GI+ + +E A Sbjct: 239 LSYERAIISDEAGTTRDRIEENFKVGTHLVRIIDTAGIRKNAGKIEKIGIRYSLAAIEEA 298 Query: 300 DLILLLKEINSKKEISFPKNIDFI--------FIGTKSDLYSTYTEEYDHLISSFTGEGL 351 D++L + + +S + + ++ + FI KSDL + + I +G Sbjct: 299 DIVLAVFDSSSASDEQDERIVELVKNSGKKVFFILNKSDLAFKFDLDLSPSIKISAKKGA 358 Query: 352 EELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLR 410 +E++ +++ L S ++ S + S ++ +LN L++ A + Sbjct: 359 DEIVGRLRDYLDSQDSSEMMLSSNHQIKQCKDASVAIKR----ALNLLGDELELFAYEIN 414 Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A ++ IT + ++LD +FS FC+GK Sbjct: 415 TAIAAISAITRSFERSEILDEMFSHFCLGK 444 >gi|71275539|ref|ZP_00651825.1| tRNA modification GTPase TrmE:Small GTP-binding protein domain:GTP-binding [Xylella fastidiosa Dixon] gi|71902449|ref|ZP_00684393.1| tRNA modification GTPase TrmE:Small GTP-binding protein domain:GTP-binding [Xylella fastidiosa Ann-1] gi|170731351|ref|YP_001776784.1| tRNA modification GTPase TrmE [Xylella fastidiosa M12] gi|71163839|gb|EAO13555.1| tRNA modification GTPase TrmE:Small GTP-binding protein domain:GTP-binding [Xylella fastidiosa Dixon] gi|71727824|gb|EAO30073.1| tRNA modification GTPase TrmE:Small GTP-binding protein domain:GTP-binding [Xylella fastidiosa Ann-1] gi|167966144|gb|ACA13154.1| thiophene and furan oxidation protein [Xylella fastidiosa M12] Length = 451 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 145/434 (33%), Positives = 227/434 (52%), Gaps = 19/434 (4%) Query: 20 ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGED 79 I IIR+SG + + PR A F +D +++D GL I FP+P SFTGED Sbjct: 24 IGIIRISGSQIKTIATGLGMTTLR-PRYAHYTRFLDVDDQVIDDGLAIWFPAPHSFTGED 82 Query: 80 SAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET 139 E HG ++ +L + R A PGEFS RAF NGK+DL++AE++AD+I + Sbjct: 83 VLELQGHGSPLLLRQLLTRCLDL-GARQARPGEFSERAFLNGKLDLIQAEAIADMIGAAD 141 Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFL 199 R + + G S +L +R +EA +DF++E + ++ + L Sbjct: 142 LRAARAARRSLDGVFSRRCEALAQQLVRLRIHVEATIDFADES-LDTLDRAQIRTSLQTL 200 Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259 +++ + + G+ + +G V++G N GKSSL NAL D AIVTD+PGTTRD L Sbjct: 201 NVELTQLLRDAEHGKRLCDGLYTVLVGPPNVGKSSLLNALIGSDRAIVTDVPGTTRDTLR 260 Query: 260 IDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL-----KEINS---- 310 + G + DTAG+RE D +E+EG++RT E++ ADL L++ +I S Sbjct: 261 ESVHFHGLEFVLVDTAGLREEGDAIEREGMRRTLNELQRADLALVVLDACDPQIGSLALA 320 Query: 311 KKEISFPKNIDFIFIGTKSDLYSTYTEEYDH---LISSFTGEGLEELINKIKSILSNK-F 366 S P+ ++I K DL + D +S+ TG GL+ L +++++L + Sbjct: 321 DALTSVPR---VLWIHNKLDLLTEPPSALDTDVIPVSAMTGAGLDTLKTRLRTLLLGETV 377 Query: 367 KKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVE 426 + + + RH+ L +T ++ A+ L++ AE LRLA +LG+I G + + Sbjct: 378 ETIEGEFSARLRHVQALQRTAAHVTDANAQFAYEHLELTAEELRLAYKALGEINGSMSPD 437 Query: 427 QLLDIIFSKFCIGK 440 +LL IFS FCIGK Sbjct: 438 ELLGRIFSNFCIGK 451 >gi|313681708|ref|YP_004059446.1| tRNA modification GTPase trme [Sulfuricurvum kujiense DSM 16994] gi|313154568|gb|ADR33246.1| tRNA modification GTPase trmE [Sulfuricurvum kujiense DSM 16994] Length = 447 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 141/453 (31%), Positives = 239/453 (52%), Gaps = 26/453 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 ETI A++T +ISI+RLSG ++ + +K PR A+L DG ++D+ + Sbjct: 3 ETIAAIATANGIGSISILRLSGDRSLEIALKLTRKSNLQPRYATLASLHHNDGTLIDEAI 62 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 +I F +P SFTGE+ EF HGG V +L + RLA PGEFS+RAF NG++DL Sbjct: 63 VIYFQAPRSFTGEEVVEFQCHGGYVVAESLLRAVLH-EGARLAEPGEFSKRAFLNGRLDL 121 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE---E 182 +AE+ A LI ++++ R+ M GEL D L I ++ E +D++EE E Sbjct: 122 TQAEATAALIEAKSDDAARILARQMKGELRGYIEGIRDSLLEILAYSEVVIDYAEEDLPE 181 Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 DV + ++ N +K+ +S + + + G+++ I+G N GKSSL NAL Sbjct: 182 DVVDQIEVKLEN----IKHTLSRTLESSRRRSGLMQGFRVAIIGKPNVGKSSLLNALLDY 237 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 + AIV+DI GTTRD + + + +L+++ DTAGIR D +E+ GI+R+ +ENAD++ Sbjct: 238 ERAIVSDIAGTTRDTIEEQVRIGTHLIRLVDTAGIRNASDEIERIGIERSIAAIENADVV 297 Query: 303 LLLKEINSKKEIS------------FPKNIDFIFIGTKSDLYSTY---TEEYDHLISSFT 347 + L ++ +EI + FI I KSDL + + E+ H I Sbjct: 298 IAL--FDASREIDEEDRSIIDLVERYRSEKPFICIVNKSDLPQVFDMSSIEHYHPIRLSC 355 Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAE 407 + + L++ + S++ ++ + S R + VR ++ A +D L+ + Sbjct: 356 KQDTQVLVDTLSSLMDHENDGEEMMLIS-ARQISATEGAVRSIDEAYEPLRDGELEFFSF 414 Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++ A + I+ +++++ D +F +FC+GK Sbjct: 415 HINAAIRYVASISRPYELDEMFDRMFGQFCLGK 447 >gi|114778886|ref|ZP_01453683.1| tRNA modification GTPase [Mariprofundus ferrooxydans PV-1] gi|114550855|gb|EAU53421.1| tRNA modification GTPase [Mariprofundus ferrooxydans PV-1] Length = 393 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 134/397 (33%), Positives = 220/397 (55%), Gaps = 9/397 (2%) Query: 48 ASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRL 107 A+L + G LD+G+ + FP P S+TGED E HGG ++ +L L ++ Sbjct: 2 ATLDAWLDHAGERLDQGITLYFPGPASYTGEDVVELQGHGGPVLLQALLSRLYEL-GCEP 60 Query: 108 ANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTH 167 A GEF+RRA E+GK+DL +AE++A I + T + + + GE + + +LT Sbjct: 61 AQAGEFTRRAVEHGKLDLSQAEAVAACIDAATVRAGKQAQRQLQGEFGIHIDRLMQRLTS 120 Query: 168 IRSFIEADLDFSEEEDVQNFSSKEVLNDIL-FLKNDISSHISQGKLGEIIRNGYKIVILG 226 + + +EA LDF EEE +++ ++ N ++ + I ++ LGE + G + ++G Sbjct: 121 LVAHVEASLDFPEEE-IRDLYFSDLRNKMVETVVAPIKEMLASAPLGERLFEGATVALVG 179 Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEK 286 N GKSSL NAL+ ++ AIV+ + GTTRD+L +D ++ G ++++DTAG+R++ D+VE Sbjct: 180 APNVGKSSLLNALSGRERAIVSHLEGTTRDLLDVDFEVNGIPLRLTDTAGLRDSHDVVEI 239 Query: 287 EGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYS-TYTEEYDHLISS 345 EG++R AD+ L + + + S + D + + K DL S +EY L S Sbjct: 240 EGVRRALQVASTADVTLFVADASRPDTWSPSIHADLLLM-NKVDLESGDIPDEYIQL-SV 297 Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLD 403 +GEGL EL +++ S L + + +H+RH L + + +E + L ++ LD Sbjct: 298 ISGEGLNELRSRLASFLGDIQMGDEGMMVTHERHRLVLVEALECIESGLGCLGNEEL-LD 356 Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + A R A L I G DVE +LD +FS+FCIGK Sbjct: 357 LAAMQWRRAWGLLAGILGIGDVEYILDRVFSEFCIGK 393 >gi|220933188|ref|YP_002510096.1| tRNA modification GTPase TrmE [Halothermothrix orenii H 168] gi|219994498|gb|ACL71101.1| tRNA modification GTPase TrmE [Halothermothrix orenii H 168] Length = 463 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 157/462 (33%), Positives = 252/462 (54%), Gaps = 32/462 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK--KKKPFPRKASLRYFFGL-----DG 58 +TI A+ST + I IR+SG V + I K K K + +G G Sbjct: 7 DTIAAISTPFGTAGIGKIRVSGSGAIDVADRIFKGVKDKSLKNVNTYTAHYGYVVEPESG 66 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 +++D+ ++IV P SFTGED EF HGG+ + +LE L RLA PGEFS+RAF Sbjct: 67 KMVDEVIVIVMRGPHSFTGEDVVEFDCHGGMIPLKKVLEVLLN-NGARLAEPGEFSKRAF 125 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG+IDL +AE + ++I+S+T+ +++ ++G+LS+ +++ + + +EA +DF Sbjct: 126 LNGRIDLAQAEGIMEVINSKTDKGLDVAINHLTGKLSNKITGIKNEVIRLLAHLEAAIDF 185 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E+E ++ F E+ N I +K++I ++ G+I + G K VI+G N GKSSL N+ Sbjct: 186 PEDE-IEGFEPDELGNRINGIKDEIEDLLATSDQGKIYQEGLKAVIVGKPNVGKSSLLNS 244 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L +++ AIVTDIPGTTRD++ +++ G ++I DTAGIRET D+VEK G+++T + Sbjct: 245 LVQENRAIVTDIPGTTRDIIEEYINIRGIPLRIIDTAGIRETRDMVEKIGVEKTRNSLRE 304 Query: 299 ADLILLLKEINSK------KEISFPKNIDFIFIGTKSDLYSTYTEE--YDHL-------I 343 ADL+L + ++ K K+ I + K+DL E+ DH I Sbjct: 305 ADLVLFMLDVAQGLTEEDIKIYDMVKDKPMIVLVNKTDLDREIDEKKIKDHFKEHPLLWI 364 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMA--SLNEKDC 400 S GL+ L I + ++ + +I + RH + + V + SLN+ Sbjct: 365 SVKEEIGLDNLKEAIIEEVVSEEVNVSDNIFITRVRHKDAMKKAVHSINRVKESLNQ--- 421 Query: 401 GL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 GL D + +L+ +LG+ITG E ++D IF+ FC+GK Sbjct: 422 GLPYDFLTIDLKDCLDALGEITGETVTEDIIDRIFADFCLGK 463 >gi|325955496|ref|YP_004239156.1| tRNA modification GTPase mnmE [Weeksella virosa DSM 16922] gi|323438114|gb|ADX68578.1| tRNA modification GTPase mnmE [Weeksella virosa DSM 16922] Length = 463 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 155/468 (33%), Positives = 249/468 (53%), Gaps = 42/468 (8%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRY--------FFGLD 57 +TI A++T AI++IR+SGP + + + K F K+ L +F + Sbjct: 5 DTICALATANGMGAIAVIRVSGPEAIEKVNTLFRSK--FGEKSLLEVDSHTVHLGYFIDE 62 Query: 58 GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 ++D+ L VF P S+TGED E HG + + +LE L K +R ANPGE++ RA Sbjct: 63 EVLIDEALFTVFRGPNSYTGEDVVEISTHGSMYIQQKVLEVLNK-NGIRNANPGEYTFRA 121 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NGK+DL +AE++ADLI+S+++ ++M+ M G S+ +++ + + IE +LD Sbjct: 122 FWNGKMDLTQAEAVADLIASDSKASHEIAMKQMRGGFSNQIKDLREQIVNFAALIELELD 181 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKL-GEIIRNGYKIVILGHSNAGKSSLF 236 FSEE DV+ F+ + L +L ++ +S + G +I+NG + I+G NAGKS+L Sbjct: 182 FSEE-DVE-FADRTKLYALLDELQEVLKRLSDSFVYGNVIKNGVPVAIVGAPNAGKSTLL 239 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 NAL ++ AIV+D+ GTTRD + L + G + DTAGIRE D +E+ GI++TF ++ Sbjct: 240 NALLNEERAIVSDVEGTTRDTIEEVLYINGIGFRFIDTAGIREAGDKIEQIGIEKTFEKI 299 Query: 297 ENADLILLLKEINSKKEISFPKNIDFIF--------IGTKSDLYS-------TYTEEYDH 341 + A ++L L + N + ++ + I K D+ S +E+ Sbjct: 300 DKASIVLYLYDSNIMADNQIANQLEALISKGKIVFNIANKIDIESDRDVIPQAIKDEFKE 359 Query: 342 LI-------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS 394 +I + E L+E + +L+N +I S+ RHL L +T+ + Sbjct: 360 VIHLEISAKEKYNIETLKEKLFDQVQLLNNT----DDTIVSNSRHLDALQKTLAQVHKIR 415 Query: 395 LNEKD-CGLDIIAENLRLASVSLGKITGCVDV-EQLLDIIFSKFCIGK 440 +D D++A +LR LG ITG +DV E +L IF KFCIGK Sbjct: 416 QGMQDGIPTDLLAMDLREGLDYLGAITGEIDVDEDILGTIFGKFCIGK 463 >gi|291547599|emb|CBL20707.1| tRNA modification GTPase trmE [Ruminococcus sp. SR1/5] Length = 458 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 159/464 (34%), Positives = 253/464 (54%), Gaps = 34/464 (7%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK------KPFPRKASLRYFFGLD 57 E+ TI A+ST S I I+R+SGP F++ + + K K P ++ Y + D Sbjct: 2 EETTIAAISTAMSASGIGIVRISGPEAFEIASGVYRSKGGKKSLKNVPSH-TIHYGYIYD 60 Query: 58 GR-ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 ++D+ L++ P ++TGED+ E HGG+ + +LE + K + +A PGEF++R Sbjct: 61 NEEMVDEVLVMAMRGPRTYTGEDTIEIDCHGGVLAMKKVLETVLKNGAI-IAEPGEFTKR 119 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NG+IDL +AE++ D+I S+ E + S+ + G + Q +KL + ++IE+ L Sbjct: 120 AFLNGRIDLSQAEAVMDVIQSKNEYSLKNSVGQLKGSVRKNVQQIREKLLYHIAYIESAL 179 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D E D+ +S +E+ + K I + + G+II+ G + VILG NAGKSSL Sbjct: 180 DDPEHYDLTGYS-EELEQIVAEEKEKIQNLLKTAGDGKIIQEGIRTVILGKPNAGKSSLL 238 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N L +D AIVTDI GTTRDVL ++L G +KI+DTAGIR+T+DIVEK G+ + Sbjct: 239 NLLLGEDRAIVTDIAGTTRDVLEEYINLHGITLKIADTAGIRQTEDIVEKIGVSKAKEMA 298 Query: 297 ENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL-------- 342 +ADLIL + + N ++ I + I + +K+DL S + + L Sbjct: 299 ADADLILYVVDSSVPLDENDEEIIKILQEKKTIVLYSKTDLESAI--DIEDLKSRINQPV 356 Query: 343 --ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL--NEK 398 IS+ G+ +L KI+ + + ++ F+ + + H + ++ E SL N Sbjct: 357 IPISAKEETGITDLEEKIREMFFS--GEIDFNDEVYITNERHRQELLKAQESLSLVENSI 414 Query: 399 DCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + G+ D + +L A SLG+I G E L++ IFSKFC+GK Sbjct: 415 ESGMPEDFYSIDLTDAYESLGRILGESLGEDLVNEIFSKFCMGK 458 >gi|160902854|ref|YP_001568435.1| tRNA modification GTPase TrmE [Petrotoga mobilis SJ95] gi|205415791|sp|A9BHZ7|MNME_PETMO RecName: Full=tRNA modification GTPase mnmE gi|160360498|gb|ABX32112.1| tRNA modification GTPase TrmE [Petrotoga mobilis SJ95] Length = 452 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 146/457 (31%), Positives = 247/457 (54%), Gaps = 30/457 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A+S+ AI ++R+SG + + K+KK P+K + + +G +D+ Sbjct: 4 DTIVAISSPIGTGAIGVVRISGDHVKNIIDQALKRKKYTPKKMYYGWLYDKEGEKVDEIT 63 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + P S+TGED E HGG + +L + K R A PGEF++RA NGK+DL Sbjct: 64 WVYHSQPHSYTGEDMLEIFCHGGKLITYAVLNTIIKY-GARQALPGEFTKRAVLNGKMDL 122 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 ++AE++ ++I+SETE+ + S + +S + L +I + IE ++D+ + D++ Sbjct: 123 IKAEAVNNVITSETEISLKASFNQLKNAVSEKIKDIKNSLLNISAQIEVEMDYPD--DIE 180 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 F ++ N ++ + N ++ + + + G I G + VI+G N+GKS+L NAL +KD A Sbjct: 181 -FEDHDLKNKLVHIVNSMNQLLKEAENGIIAVEGVRTVIVGKPNSGKSTLLNALLRKDRA 239 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTDIPGTTRD + +L++ G +++ DTAGIR T+D +E+ GI+RT ++N+ LIL + Sbjct: 240 IVTDIPGTTRDTIEENLNINGIYIRLIDTAGIRYTEDTLERVGIERTINSIKNSHLILFV 299 Query: 306 KE----INSKKEISFPK-----NIDFIFIGTKSDLYSTYTEEY---------DHLISSFT 347 + + E+ + K + I I KSD + Y D +I S Sbjct: 300 LDGTTPFTQEDELIYNKLNELGDKTVIIILNKSDSPNFTENNYLSLKQKNPNDFVIISAK 359 Query: 348 GEGLEELINKIKSILSNKFKKLPFSIP--SHKRHLYHLSQTVRYLEMASLN--EKDCGLD 403 ++ L NKI F+K+ P +++R L + ++ + ++N EK D Sbjct: 360 NGAIKNLENKIYEKF---FEKVNIEEPTLTNQRQKITLESSKEFV-LNAINSLEKGFSND 415 Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 II ++R A + +++G E+LLD IFS FC+GK Sbjct: 416 IIMYDVRKALEKIYELSGENYTEELLDKIFSTFCVGK 452 >gi|332983463|ref|YP_004464904.1| tRNA modification GTPase trmE [Mahella australiensis 50-1 BON] gi|332701141|gb|AEE98082.1| tRNA modification GTPase trmE [Mahella australiensis 50-1 BON] Length = 460 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 157/463 (33%), Positives = 245/463 (52%), Gaps = 36/463 (7%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFI-----CKKKKPFPRKASLRYFFGLD---G 58 TI A+ST I I+RLSGP + + I +K K P + S+ Y D G Sbjct: 5 TIAAISTPIGEGGIGIVRLSGPKAIDIADSIFINIKGRKIKDAPNR-SILYGHIKDPDTG 63 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 R +D+ L+ + P S+TGED E HGG+ + +LE +A LA PGEF++RAF Sbjct: 64 RDIDEVLVSIMRGPHSYTGEDVVEISGHGGMLPLRRVLE-VAVREGAVLAQPGEFTKRAF 122 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELS----SLYGQWIDKLTHIRSFIEA 174 NG+IDL +AES+ D+IS++T++ S+ + G+LS + +D LTHI + I Sbjct: 123 LNGRIDLAQAESVMDIISAKTDVALTSSVMQLEGKLSRSIEKIRVALLDVLTHIEALI-- 180 Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234 D+ EE DV S+K++ + + I ++ G IIR G K I+G N GKSS Sbjct: 181 --DYPEE-DVDELSTKDMRKKLADEYDSIEKLLATADTGRIIREGLKTAIIGRPNVGKSS 237 Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294 L NAL K D AIVTDIPGTTRD++ +++ G + I DTAGIRE D +E+ GI+RT Sbjct: 238 LLNALLKADRAIVTDIPGTTRDIIEDYVNVNGIALNIIDTAGIREAADEIERIGIERTRD 297 Query: 295 EVENADLILLLKE---------------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEY 339 V ADL++ + + I+SKK I D + T++++ + + Sbjct: 298 TVYRADLVIFVLDGSQPLHQDDRAIASLISSKKAIVVLNKSDLGRVVTEAEVNAVLPDAP 357 Query: 340 DHLISSFTGEGLEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398 +S G GL++L I ++ K ++ ++ RH L L+ + Sbjct: 358 VIEMSLKEGYGLDDLEGTITDMVYHGKAIASDEAMITNVRHKEALISAAEALQRCLFSID 417 Query: 399 D-CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D +D+++ +L+ A ++G I+G ++++D IF +FC+GK Sbjct: 418 DGMPMDLVSIDLKDAIEAMGLISGKTVEDEVVDRIFERFCVGK 460 >gi|254432026|ref|ZP_05045729.1| tRNA modification GTPase TrmE [Cyanobium sp. PCC 7001] gi|197626479|gb|EDY39038.1| tRNA modification GTPase TrmE [Cyanobium sp. PCC 7001] Length = 456 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 140/441 (31%), Positives = 235/441 (53%), Gaps = 29/441 (6%) Query: 19 AISIIRLSGPSCFQVCEFICKKKKPFPRKA---SLRYFFG--LDGRI---LDKGLLIVFP 70 +++I+R+SGP E I + P + S R +G +D +D+ LL++ Sbjct: 26 SVAIVRISGPRA----EAIGARLFRAPGQQVWDSHRVLYGHVVDPATEEPVDEALLLLMR 81 Query: 71 SPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAES 130 +P SFT E E H HGG+ V +LE L R A PGEFS+RAF +G++DL AE+ Sbjct: 82 APRSFTRETVVELHGHGGLVAVQRVLE-LVLAAGARRALPGEFSQRAFLHGRLDLTRAEA 140 Query: 131 LADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSK 190 +++L+++ + +L+M G+ G L G ++L + +EA +DF EED+ + Sbjct: 141 ISELVTARSRRAAQLAMAGLDGGLQRRIGALRERLLDQLAELEARVDF--EEDLPPLDGE 198 Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250 V+ + ++ ++ +++ + G ++R G ++ I+G N GKSSL N L++++ AIVTD+ Sbjct: 199 AVVAALTAVRRELEQLVAEARQGALLREGLRVAIVGRPNVGKSSLLNRLSRRERAIVTDL 258 Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT-------FLEVENADLIL 303 PGTTRD+L +L L+G + + DTAGIR TDD VE+ GI R+ V DL Sbjct: 259 PGTTRDLLESELVLDGVPLTLLDTAGIRPTDDAVEQLGIARSREALAAADAVVLVFDLTA 318 Query: 304 LLKEINSKKEISFPKNIDFIFIGTKSDL-YSTYTEEYDHLISSFTGEGLEELINK-IKSI 361 +++ P + + +G K+DL + D IS+ TG G + L+ + ++ Sbjct: 319 GWTPADAELRALVPDGVPLLLVGNKADLDPGPAAAQADVAISALTGAGSDALVEQLLQRC 378 Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTV--RYLEMASLNEKDCGLDIIAENLRLASVSLGKI 419 + + + + ++ +R L + LE A+ + D +LR A LG+I Sbjct: 379 GAAEVQGVQVALNDRQRDLAARAAVALTGSLEAAA---QQLPWDFWTIDLRGAVRCLGEI 435 Query: 420 TGCVDVEQLLDIIFSKFCIGK 440 TG E +LD +F++FCIGK Sbjct: 436 TGEEVSEAVLDRVFARFCIGK 456 >gi|300362683|ref|ZP_07058859.1| tRNA modification GTPase TrmE [Lactobacillus gasseri JV-V03] gi|300353674|gb|EFJ69546.1| tRNA modification GTPase TrmE [Lactobacillus gasseri JV-V03] Length = 461 Score = 208 bits (529), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 151/466 (32%), Positives = 256/466 (54%), Gaps = 44/466 (9%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK----KKKPFPRKASLRYFFGLDGR-- 59 +TI A+ST ISI+RLSG + + K K P ++ Y +D + Sbjct: 9 DTIAAISTPIGEGGISIVRLSGEDAVAIANKLFKGADLTKVP---THTIHYGHIVDPKTQ 65 Query: 60 -ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 ++D+ ++ V +P++FT ED E + HGG+ V N IL+ L R+A+PGEF++RAF Sbjct: 66 EVVDETMVSVLRAPKTFTREDMVEINCHGGMIVTNDILQ-LLLANGARMADPGEFTKRAF 124 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFIEA 174 NG+IDL +AES+ D++ ++T+ R+++M ++G ++ ++ + +D + H E Sbjct: 125 MNGRIDLTQAESVMDIVRAKTDKSRQVAMTQLAGGLLEKIKTMRQELLDTMAHE----EV 180 Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234 ++D+ E D+ + +S+E+ + I + + G+IIRNG I+G N GKSS Sbjct: 181 NIDYPEY-DMDDLTSQEMKKKAQEVLKQIEQLLQTAQEGKIIRNGLATAIVGRPNVGKSS 239 Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294 L N L + D AIVTDI GTTRD L + ++G +K+ DTAGI T+D VEK G++R+ Sbjct: 240 LLNYLTQDDKAIVTDIAGTTRDTLEEYVSVKGVPLKLIDTAGIHHTEDKVEKIGVERSKK 299 Query: 295 EVENADLILLLKEINS------KKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTG 348 ++ ADL+LL+ + + K+ + N I I K DL + ++E +I + T Sbjct: 300 AIKEADLVLLILDASQDLTAEDKRLLDLTANKKRIIILNKQDLGTKISQE---MIKNLTD 356 Query: 349 EGL---EELINKIKSILSNKFKKLPFS---------IPSHKRHLYHLSQTVRYLE--MAS 394 + L K L N +KL FS + +++R L++ + LE ++ Sbjct: 357 NPIIVTSILKQKNMDALENAIEKLFFSGIENSQNQILVTNQRQAGLLAKAKQSLEDVISG 416 Query: 395 LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +N+ LD++ +L+ A +LG+ITG ++L+ +FS+FC+GK Sbjct: 417 INDA-MPLDLVQIDLKNAWDTLGEITGESAPDELITQLFSQFCLGK 461 >gi|16330488|ref|NP_441216.1| tRNA modification GTPase TrmE [Synechocystis sp. PCC 6803] gi|2495120|sp|P73839|MNME_SYNY3 RecName: Full=tRNA modification GTPase mnmE gi|1652979|dbj|BAA17896.1| thiophen and furan oxidation protein [Synechocystis sp. PCC 6803] Length = 456 Score = 208 bits (529), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 147/464 (31%), Positives = 243/464 (52%), Gaps = 39/464 (8%) Query: 5 KETIFAVSTGALPS--AISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFG----- 55 ++TI A++T +P +I ++RLSGP + + F + + S R +G Sbjct: 4 EDTIAAIATAIVPQQGSIGVVRLSGPQSLTIAKTLFDAPGNQTW---ESHRILYGHVRHP 60 Query: 56 LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 +D+ LL++ +P S+T ED EF HGGI + + +L RLA PGEFS Sbjct: 61 QTKAAIDEALLLLMLAPRSYTKEDVVEFQCHGGI-MPVQQVLQLCLQQGARLAQPGEFSF 119 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG++DL +AES+++L+ +++ +++ G+ G+L+ + I + +EA Sbjct: 120 RAFLNGRLDLTQAESISELVGAQSPQAAAIALAGLQGKLAQPIRDLRNTCLDILAEVEAR 179 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +DF E+D+ + + L + ++ + GE++R G K+ I+G N GKSSL Sbjct: 180 IDF--EDDLPPLDEDSIRQQLQNLYQQLEDILNTAQRGELLRTGLKVAIVGQPNVGKSSL 237 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 NA ++ D AIVTD+PGTTRDV+ L +EG +++ DTAGIRET D VE+ G++R+ Sbjct: 238 LNAWSRTDRAIVTDLPGTTRDVVESQLVVEGIPIQVLDTAGIRETADQVEQIGVERSRKA 297 Query: 296 VENADLILLL---------------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD 340 + ADL+LL +++ + I ID ++DL S E + Sbjct: 298 AQQADLVLLTVDAHQGWTEADQLIYEQVKDRPLILVINKIDL----GRADLVSYPPEITN 353 Query: 341 HLISSFTGE-GLEELINKIKSILSN---KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396 ++++ G+E L N I ++ + L F+I + + +Q ++ Sbjct: 354 TVLTAAAANLGIEALENAIIEQVNQTNLSPQNLDFAINQRQEAVLTEAQLALKQLQQTMA 413 Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E+ LD +LRLA +LG++TG E +LD IFS+FCIGK Sbjct: 414 EQ-LPLDFWTIDLRLAINALGQVTGETVTESVLDRIFSRFCIGK 456 >gi|329943265|ref|ZP_08292039.1| tRNA modification GTPase TrmE [Chlamydophila psittaci Cal10] gi|332287844|ref|YP_004422745.1| tRNA modification GTPase [Chlamydophila psittaci 6BC] gi|313848416|emb|CBY17420.1| probable tRNA modification GTPase TrmE [Chlamydophila psittaci RD1] gi|325507350|gb|ADZ18988.1| tRNA modification GTPase [Chlamydophila psittaci 6BC] gi|328814812|gb|EGF84802.1| tRNA modification GTPase TrmE [Chlamydophila psittaci Cal10] gi|328915105|gb|AEB55938.1| tRNA modification GTPase TrmE [Chlamydophila psittaci 6BC] Length = 443 Score = 208 bits (529), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 153/449 (34%), Positives = 235/449 (52%), Gaps = 20/449 (4%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP-FPRKASLRYFFGLDGRILD 62 + +TI A++T +I+I+R+SGP Q+ + I P F + +G+ +D Sbjct: 3 KNDTIAAIATPPGEGSIAIVRVSGPEAIQITDKIFSGSVPSFSSHTAHLGTVSYNGQQID 62 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 + LL++ +P SFTGED E HGG + IL L R A PGEFS+RAF NGK Sbjct: 63 QTLLLIMRAPRSFTGEDVIELQCHGGYFSCSQILAALIAE-GARPALPGEFSQRAFLNGK 121 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 IDL++AE++ ++I++++ ++ G S Q + +FIE DF E+E Sbjct: 122 IDLIQAEAIQNIIAADSLDAFHIAQNHFQGHFSKKVQQISSLIIESLAFIEVLADFPEKE 181 Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 LN+ + + D+ + QG+ I G I++ GH NAGKSSL NAL K Sbjct: 182 QPDMEDPLHRLNEAILIIEDLIASFDQGQK---IAQGTSIILAGHPNAGKSSLLNALTNK 238 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 + AIVTDIPGTTRD+L L+G +++ D+AG RET++ +E+EGI+R +E ++ I Sbjct: 239 NRAIVTDIPGTTRDILEETWMLQGKRIRLIDSAGQRETNNPIEQEGIERALAAMEESEAI 298 Query: 303 LLLKEINSKKEISFPKNI---DFIFIGTKSDLYSTY---TEEYDHLISSFTGEGLEELIN 356 L + ++ ++ P+ + + + KSDL + T +S+ TGEG+ EL Sbjct: 299 LWVMDV-TQPPPPLPEILMRKPSLLLWNKSDLGTPPHIETTLPQLAVSAKTGEGIFELKQ 357 Query: 357 KIKSILS----NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAENLRL 411 I+ + K K+ F + S RH L Q YL A + + IA LR Sbjct: 358 FIQKWMQKQQLGKNAKV-FLVSS--RHHTILQQMRTYLLSAQEGLQHQFPPEFIALELRQ 414 Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A + G ++G E +L IFS+FCIGK Sbjct: 415 ALQTTGNLSGSEINETILGEIFSRFCIGK 443 >gi|154483917|ref|ZP_02026365.1| hypothetical protein EUBVEN_01623 [Eubacterium ventriosum ATCC 27560] gi|149735408|gb|EDM51294.1| hypothetical protein EUBVEN_01623 [Eubacterium ventriosum ATCC 27560] Length = 459 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 159/461 (34%), Positives = 242/461 (52%), Gaps = 32/461 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFI---CKKKKPFPRKASLRYFFG--LDG-R 59 +TI A+S+ A S I IIR+SG +V + I K K S +G +DG + Sbjct: 5 DTIAAISSAAGNSGIGIIRVSGDEAIEVVDKIFRPANKNKKLANVESHTVHYGHIMDGDK 64 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 LD+ L+IV +P S+TGED+ E HGG+ ++ +L+ + K R A PGEF++RAF Sbjct: 65 TLDQVLVIVMKNPHSYTGEDTVEIDCHGGMLILKKVLDLVLK-NGARTAEPGEFTKRAFL 123 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NG+IDL +AE++ DLI+S+ + S+E + G +S + + +FIE+ LD Sbjct: 124 NGRIDLSQAEAVMDLINSKNDFALNSSIEQLKGGVSDAIKDIRKDIIYHIAFIESALDDP 183 Query: 180 EEEDVQNFSSK--EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 E + + + E+LN+ + N IS ++ G I++ G K VILG NAGKSSL N Sbjct: 184 EHISLDGYDEEITEMLNENI---NKISKLVNSFDNGRIMKEGIKTVILGKPNAGKSSLLN 240 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 + +D AIVTDI GTTRD L +++ G +KI DTAGIR+T+D+VE+ G+ + + Sbjct: 241 LMLGEDRAIVTDIEGTTRDTLEENINFNGLSLKIIDTAGIRDTEDLVERIGVNKAKEIAK 300 Query: 298 NADLIL---------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL 342 DLI+ ++K IN K+ I D + DL + L Sbjct: 301 EGDLIIYVVDGSRELDDNDREIIKLINDKQAIILVNKSDMDTVINIDDLKKDSNRDV-IL 359 Query: 343 ISSFTGEGLEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401 S GEG+++L +I+++ S K ++ RH L + L+ N D G Sbjct: 360 FSVKNGEGMDQLEEEIRNMFYSGKVTYNDQVYITNARHKEALENALESLKQVK-NSVDAG 418 Query: 402 L--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + D + +L A LG I G + L++ IFSKFC+GK Sbjct: 419 MPEDFYSIDLMDAYTDLGLIIGESVEDDLVNEIFSKFCMGK 459 >gi|239624142|ref|ZP_04667173.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239520528|gb|EEQ60394.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 459 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 157/460 (34%), Positives = 250/460 (54%), Gaps = 29/460 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFP----RKASLRYFFGLDG- 58 +TI A++TG S I I+R+SG F V + + + K + P R ++ Y F DG Sbjct: 4 DTIAAIATGMGNSGIGIVRISGDEAFTVIDKLYRNKDGRQVPISQARSHTVHYGFIYDGD 63 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 +D+ L+++ P S+T ED+ E HGGI +V ILE + R A PGEF++RAF Sbjct: 64 EKVDEALVLIMKGPHSYTAEDTVEIDCHGGILMVRKILEAVIH-AGARTAEPGEFTKRAF 122 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG+IDL +AE++AD+I++ E + S+ +SG +S + ++ + +FIE+ LD Sbjct: 123 LNGRIDLSQAEAVADVINATNEYALKSSVSQLSGSVSKRIKELRSQILYQIAFIESALDD 182 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E + + +E+L + + ++ ++ G ++ G K VILG NAGKSSL N Sbjct: 183 PEHISLDGYD-EELLARLDPMVEEVKRLLASADDGRVMTEGVKTVILGKPNAGKSSLMNV 241 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L ++ AIVT+I GTTRD L + L+G + + DTAGIR+T+D+VEK G+ R + Sbjct: 242 LLGEERAIVTEIAGTTRDTLEEHIYLQGISLNVVDTAGIRDTEDVVEKIGVDRARRAAGD 301 Query: 299 ADLILLLKEIN-----SKKEI-SFPKNIDFIFIGTKSDL-YSTYTEEYDHL-------IS 344 ADLI+ + + + S +EI F + I + KSDL EE + + +S Sbjct: 302 ADLIIFVVDGSRPLDESDREIMDFIRGRKSIILLNKSDLELVVGKEELEGMSGQKVIPVS 361 Query: 345 SFTGEGLEELINKIKSILSN---KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-C 400 + +G+EEL +IK + + KF + ++ RH L Q +R L M + +D Sbjct: 362 AKEEQGIEELEQEIKRLFYHGELKFNDQVY--ITNVRHKEALEQALRSLLMVKGSIEDRM 419 Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D + +L A LG ITG + L++ IF++FC+GK Sbjct: 420 PEDFYSIDLMNAYEQLGLITGEAVDDDLVNEIFARFCMGK 459 >gi|55980900|ref|YP_144197.1| tRNA modification GTPase TrmE [Thermus thermophilus HB8] gi|81821865|sp|Q5SJS7|MNME_THET8 RecName: Full=tRNA modification GTPase mnmE gi|55772313|dbj|BAD70754.1| thiophene and furan oxidation protein [Thermus thermophilus HB8] Length = 432 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 147/443 (33%), Positives = 238/443 (53%), Gaps = 21/443 (4%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD---GR 59 K+ I A++T AI ++RLSG ++ + + K P K R+ G +D G Sbjct: 4 KDPICAIATPPGKGAIGVVRLSGEGALEIAARVWRGKDPRRLKGG-RFALGEVVDPKTGE 62 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 +D+ +L+VF +P S+TGED EF HG AV+ ++E L R A GEF+ RA+ Sbjct: 63 AIDQAILLVFRAPRSYTGEDLVEFQTHGSPAVLRRVMEVLVAE-GARPAGRGEFTFRAYL 121 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NGK+DL +AE++ LI +E E+ RR ++ + G LS ++L ++ + I+A LD+ Sbjct: 122 NGKMDLAQAEAVLALIEAEGELARRQALRALEGALSRRIEALENRLLNLLAHIQALLDYP 181 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 EE V+ ++ + ++L ++ + ++Q K + + G ++ ++G NAGKSSL NAL Sbjct: 182 EE-GVEPLEAERTIREVL---AEVEALLAQAKASRLAQKGARLALIGAPNAGKSSLLNAL 237 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 + A+V+ IPGTTRD L L+L G + DTAG+RET+D VE+ G++R E A Sbjct: 238 LGYERALVSPIPGTTRDYLEAPLELFGIPLVAVDTAGVRETEDPVERMGVERALGIAEEA 297 Query: 300 DLILLLKEINSKKEISFPKNIDFIF-IGTKSDLYSTYTEEYDHLISSFTGEGLEELINKI 358 DL+L + + + K P + TKSDL + + +SS TGEGL+ L + Sbjct: 298 DLVLYVVDRSQPKPAPPPLPWARTLKVATKSDLPPAWEDPEFLPVSSLTGEGLDRLKEAV 357 Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDIIAENLRLASVSLG 417 + L + + +R + L + LE A SL E D++ L A+ +L Sbjct: 358 REALLGREGG---EVLLTERQVEALLRARERLEEALSLPE-----DLMGLALEEAARALA 409 Query: 418 KITGCVDVEQLLDIIFSKFCIGK 440 +TG E+++ +F FC+GK Sbjct: 410 LLTGKEVAEEVVARVFQNFCVGK 432 >gi|329919799|ref|ZP_08276750.1| tRNA modification GTPase TrmE [Lactobacillus iners SPIN 1401G] gi|328937146|gb|EGG33574.1| tRNA modification GTPase TrmE [Lactobacillus iners SPIN 1401G] Length = 461 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 155/467 (33%), Positives = 264/467 (56%), Gaps = 46/467 (9%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----LDGR-I 60 +TI A++T ISIIR+SG + ++ I + + AS +G D + + Sbjct: 9 DTIAAIATPIGEGGISIIRVSGENALEIVNKIFRGAN-LNKVASHTIHYGHIIDYDNKDV 67 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+ L+ V +P++FT E++ E HGG+ V IL+ L R+A PGEF++RAF N Sbjct: 68 VDEVLVTVMLAPKTFTRENTVEVSCHGGLLVTQKILQ-LILDNGARMATPGEFTKRAFIN 126 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFIEADL 176 G+IDL +AES+ D+I ++T+ R+++M+ + G E+ L + ++ + H E ++ Sbjct: 127 GRIDLTQAESIMDIIEAKTDRARQVAMKQLEGGLLFEIRKLRQELLNTMAHE----EVNI 182 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D+ E D+ + +SKE+ + + +I ++ + G+++R+G I+G N GKSSL Sbjct: 183 DYPEY-DMDDVTSKEMYDKAQQVIKEIDKLLATAQEGKVVRSGLATAIVGRPNVGKSSLL 241 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N L+K++ AIVT+I GTTRD L + L+G L+K+ DTAGIR+TDDIVEK G++R+ + Sbjct: 242 NYLSKEEKAIVTNIAGTTRDTLEEYVSLKGILLKLIDTAGIRQTDDIVEKIGVERSKRAI 301 Query: 297 ENADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTYTEEYDH------- 341 +DL+LLL INS +E++ ++ I I K+D + T++ Sbjct: 302 TESDLVLLL--INSSEELTEEDQKLLELTQDKKRIVILNKADQVAKITKKDIQKITDSPI 359 Query: 342 -LISSFTGE---GLEELINKI--KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL--EMA 393 IS + GLEE I + + I +K + + +++R L + R L + Sbjct: 360 VTISVLKKQNMIGLEEAIKSLFLQGITDSKSEVMV----TNQRQNDLLRKAKRSLIEAIE 415 Query: 394 SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++N+ + LD++ +L+ A SLG+ITG ++L+ +FSKFC+GK Sbjct: 416 AIND-NMPLDLVQIDLKEAWDSLGEITGDTAPDELITQLFSKFCLGK 461 >gi|213650174|ref|ZP_03380227.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 279 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 112/282 (39%), Positives = 172/282 (60%), Gaps = 3/282 (1%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+H +TI A +T + I+R+SG V + + K P PR A F +DG Sbjct: 1 MSH-NDTIVAQATPPGRGGVGILRISGLKARDVAQEVLGKL-PKPRYADYLPFKDVDGSA 58 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG +++ +L+ + +P +R+A PGEFS RAF N Sbjct: 59 LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + +E R ++ + G S+ ++ LTH+R ++EA +DF + Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + S ++ + + D+ + ++ + G ++R G K+VI G NAGKSSL NALA Sbjct: 179 EE-IDFLSDGKIEAQLNGVIADLDAVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282 ++ AIVTDI GTTRDVL + ++G + I DTAG+R+ +D Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAND 279 >gi|167762630|ref|ZP_02434757.1| hypothetical protein BACSTE_00987 [Bacteroides stercoris ATCC 43183] gi|167699736|gb|EDS16315.1| hypothetical protein BACSTE_00987 [Bacteroides stercoris ATCC 43183] Length = 461 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 150/464 (32%), Positives = 244/464 (52%), Gaps = 33/464 (7%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFI---CKKKKPFPRKASLRYFFG--LDG- 58 ++TI A++T A AI IR+SGP ++ I + FG DG Sbjct: 3 QDTICAIAT-AQGGAIGCIRVSGPEAIEITSCIFTPAATNRELGDSKPYTLTFGRIYDGS 61 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 ++D+ L+ +F +P S+TGE+S E HG ++ +L+ L K R+A PGE+++RAF Sbjct: 62 EVIDEVLVSLFRAPHSYTGENSTEITCHGSAYILQKVLQLLIK-NGCRMAAPGEYTQRAF 120 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NGK+DL +AE++ADLI+S + RL+M M G S D+L H S IE +LDF Sbjct: 121 LNGKMDLSQAEAVADLIASSSAATHRLAMSQMRGGFSKELATLRDQLLHFTSLIELELDF 180 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 S+ E+++ E+ ++ I+ ++ +G I+NG + I+G +NAGKS+L N Sbjct: 181 SDHEELEFADRSELCQLANNIEKVIARLVNSFNVGNAIKNGVPVAIIGETNAGKSTLLNV 240 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L +D AIV+DI GTTRD++ +++ G + DTAGIRET D +E GI+RTF +++ Sbjct: 241 LLNEDKAIVSDIHGTTRDIIEDTVNIGGITFRFIDTAGIRETSDTIESLGIERTFQKLDQ 300 Query: 299 ADLIL-LLKEINSKKEIS------FPK--NIDFIFIGTKSDLY----STYTEEYDHLISS 345 A+++L ++ N++ +I+ P+ I + K+DL ++ + + + S Sbjct: 301 AEIVLWMIDATNAQAQITQLAGQLLPRCERKQLILVYNKADLVDNIQNSIPDNFPDNVQS 360 Query: 346 FT-----GEGLEELINKIKSILSNKFKKLPFS--IPSHKRHLYHLSQTVRYLEMAS--LN 396 T E +EEL + I S + + I ++ RH L+ + + L Sbjct: 361 ITLSAKKREHIEELQRML--ITSAHLPTITQNDVIVTNVRHYEALNNALEAIHRVQEGLT 418 Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G D I++++R L I G V + +L IF FCIGK Sbjct: 419 NNISG-DFISQDIRECIFHLSDIAGEVTNDMVLQNIFQHFCIGK 461 >gi|167972273|ref|ZP_02554550.1| tRNA modification GTPase TrmE [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|167974296|ref|ZP_02556573.1| tRNA modification GTPase TrmE [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|167988962|ref|ZP_02570633.1| tRNA modification GTPase TrmE [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|195867400|ref|ZP_03079404.1| tRNA modification GTPase TrmE [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198273386|ref|ZP_03205922.1| tRNA modification GTPase TrmE [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209554346|ref|YP_002284431.1| tRNA modification GTPase TrmE [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225550729|ref|ZP_03771678.1| tRNA modification GTPase TrmE [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225551093|ref|ZP_03772039.1| tRNA modification GTPase TrmE [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|184209425|gb|EDU06468.1| tRNA modification GTPase TrmE [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188018680|gb|EDU56720.1| tRNA modification GTPase TrmE [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188998243|gb|EDU67340.1| tRNA modification GTPase TrmE [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195660876|gb|EDX54129.1| tRNA modification GTPase TrmE [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198249906|gb|EDY74686.1| tRNA modification GTPase TrmE [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209541847|gb|ACI60076.1| tRNA modification GTPase TrmE [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225378908|gb|EEH01273.1| tRNA modification GTPase TrmE [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|225379883|gb|EEH02245.1| tRNA modification GTPase TrmE [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 438 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 144/446 (32%), Positives = 234/446 (52%), Gaps = 22/446 (4%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRILDK 63 TI A++T + AI IIR+SGP F++ I K +K + + ++ + ++LD+ Sbjct: 3 TIVALATAPMNCAIHIIRISGPQAFEMINKISTTK---IKKETFKIWYTTLKDNDQVLDE 59 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 L+ F P++FTGED E + HGG+ V N I++ L K + A GEFSRRA N K+ Sbjct: 60 VLVNTFVGPKTFTGEDLVEINCHGGVIVANLIIKILIKY-GCQPAQRGEFSRRALLNKKM 118 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTH----IRSFIEADLDFS 179 DL + E++ +L++++ E LS++G+ G L Q I H I IE ++D+ Sbjct: 119 DLSKIEAINNLVNAKNE----LSVKGVIGALLGRVSQSISDFKHELFMIIGQIEVNIDYP 174 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 E +DV+ + + +L L I I Q K I G K++I+G N GKS+L NAL Sbjct: 175 EYDDVEQVDAINLKQRLLVLNEKIKKIIDQSKKFLPINKGIKVLIIGKPNVGKSTLLNAL 234 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 + AIVTDIPGTTRDV+ ++++ + I DTAGI T+D VE GI + + Sbjct: 235 CNEQKAIVTDIPGTTRDVIESSINIDNITLNILDTAGIHSTNDFVENLGINKAKELINKV 294 Query: 300 DLILLLKEINSKKEI---SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356 DL+L L N+++++ K+ + + TK DL Y++ D + + ++ LI+ Sbjct: 295 DLVLYLVPANNQQDLELYDLIKDQKHLLVYTKKDLIDQYSD--DQIYINAKDNDIQALID 352 Query: 357 KIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAENLRLASV 414 KIK + +F + +R + L ++ A N EK +D++ +L ++ Sbjct: 353 KIKELFYVQEFDNANIDVLQSQRQIGILENVNYLIDNAITNLEKGDTVDLVVADLEFCNL 412 Query: 415 SLGKITGCVDVEQLLDIIFSKFCIGK 440 L ++ G LD +F FC+GK Sbjct: 413 RLNELLGIGSEYDFLDDLFKNFCVGK 438 >gi|331702698|ref|YP_004399657.1| tRNA modification GTPase mnmE [Lactobacillus buchneri NRRL B-30929] gi|329130041|gb|AEB74594.1| tRNA modification GTPase mnmE [Lactobacillus buchneri NRRL B-30929] Length = 464 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 156/464 (33%), Positives = 252/464 (54%), Gaps = 33/464 (7%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LDGRI- 60 E +TI A+ST ISIIR+SG V + + + K + AS +G +D Sbjct: 7 EFDTIAAISTPPGEGGISIIRISGEEALDVAKKLYRGKD-LDKVASNTINYGHIIDPDTN 65 Query: 61 --LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 +D+ +L V +P ++T ED E + HGGI N IL+ LA R+A PGEF++RAF Sbjct: 66 EEVDEVMLSVMRAPHTYTEEDIVEINCHGGIVATNRILQ-LALSHGARMAEPGEFTKRAF 124 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG+IDL ++E++ DLI ++T+ + ++ + G LS L + + + +E ++D+ Sbjct: 125 LNGRIDLSQSEAVMDLIEAKTDRSMKAAINQLDGNLSHLIKHLRQDILDVLAQVEVNIDY 184 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E +DV+ +SK + + I + K G+I+R G I+G N GKSSL N Sbjct: 185 PEYDDVETMTSKLLREKATDVHARIVQLLKTAKQGKILREGLATSIIGRPNVGKSSLLNN 244 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L +D AIVTD+PGTTRDVL +++ G +K+ DTAGIR+T D VEK G+ R+ + + Sbjct: 245 LLHEDKAIVTDVPGTTRDVLEEYVNVHGVPLKLVDTAGIRDTTDKVEKIGVDRSRKAINS 304 Query: 299 ADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEY-------DHLISS 345 ADL+LL+ + KK +S ++ I I K+DL + ++ ++IS+ Sbjct: 305 ADLVLLVLNASEPLTDEDKKLLSATQDKQRIIILNKTDLPTKIDQDQIKSLADGQNVIST 364 Query: 346 --FTGEG---LEELINKI---KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE 397 +G LEELI K+ + I S++ + ++ RH+ L+Q + LE Sbjct: 365 SAIKADGLTQLEELIAKMFFDEGIESSQNDIM----VTNARHIGLLNQAKQALEDVVKGL 420 Query: 398 KD-CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D +D++ ++ LG+ITG ++L+D +FS+FC+GK Sbjct: 421 DDGMPVDLVQIDMTRCWDFLGEITGDSYQDELIDQLFSQFCLGK 464 >gi|312872669|ref|ZP_07732734.1| tRNA modification GTPase TrmE [Lactobacillus iners LEAF 2062A-h1] gi|311091711|gb|EFQ50090.1| tRNA modification GTPase TrmE [Lactobacillus iners LEAF 2062A-h1] Length = 461 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 151/465 (32%), Positives = 261/465 (56%), Gaps = 42/465 (9%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG-----LDGRI 60 +TI A++T ISIIR+SG + ++ I + + AS +G + + Sbjct: 9 DTIAAIATPIGEGGISIIRVSGENALEIVNKIFRGAN-LNKVASHTIHYGHIIDYANKDV 67 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+ L+ V +P++FT E++ E HGG+ V IL+ L R+A PGEF++RAF N Sbjct: 68 VDEVLVTVMLAPKTFTRENTVEVSCHGGLLVTQKILQ-LILDNGARMATPGEFTKRAFIN 126 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFIEADL 176 G+IDL +AES+ D+I ++T+ R+++M+ + G E+ L + ++ + H E ++ Sbjct: 127 GRIDLTQAESIMDIIEAKTDRARQVAMKQLEGGLLFEIRKLRQELLNTMAHE----EVNI 182 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D+ E D+ + +SKE+ + + +I ++ + G+++R+G I+G N GKSSL Sbjct: 183 DYPEY-DMDDVTSKEMYDKAQQVIKEIDKLLATAQEGKVVRSGLATAIVGRPNVGKSSLL 241 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N L+K++ AIVT+I GTTRD L + L+G L+K+ DTAGIR+TDDIVEK G++R+ + Sbjct: 242 NYLSKEEKAIVTNIAGTTRDTLEEYVSLKGILLKLIDTAGIRQTDDIVEKIGVERSKRAI 301 Query: 297 ENADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTYTEE-----YDHLI 343 +DL+LLL INS +E++ ++ I I K+D + T++ D I Sbjct: 302 TESDLVLLL--INSSEELTEEDQKLLELTQDKKRIIILNKADQVAKITKKDIQKITDSPI 359 Query: 344 SSFT------GEGLEELINKI--KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL 395 + + GLEE I + + I +K + + + + L ++ + ++ Sbjct: 360 VTISVLKKQNMTGLEEAIKSLFLQGITDSKSEVMVTN--QRQNDLLRKAKQSLIEAIEAI 417 Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 N+ + LD++ +L+ A SLG+ITG ++L+ +FSKFC+GK Sbjct: 418 ND-NMPLDLVQIDLKEAWDSLGEITGDTAPDELITQLFSKFCLGK 461 >gi|326793316|ref|YP_004311137.1| tRNA modification GTPase mnmE [Clostridium lentocellum DSM 5427] gi|326544080|gb|ADZ85939.1| tRNA modification GTPase mnmE [Clostridium lentocellum DSM 5427] Length = 460 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 155/460 (33%), Positives = 254/460 (55%), Gaps = 27/460 (5%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL----DG 58 ++TI A+ST I IIR+SG ++ + F KK + S +G G Sbjct: 4 EDTIAAISTPIGVGGIGIIRVSGKETIEIVDKVFRAANKKSLKKVDSHTITYGHIVSDSG 63 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 ++LD+ L+++ P +FT ED E + HGG +N +L E+ K R+A+ GEF++RAF Sbjct: 64 KVLDEVLIMLMKGPRTFTREDIIEINCHGGPVPLNAVLMEVIK-AGARMADNGEFTKRAF 122 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG+IDL + E++ D+I S+TE+ ++ + G LS ++ D L + + IE +D+ Sbjct: 123 LNGRIDLAQVEAIMDIIESKTELSLSQAVGQLEGNLSKKIKEYQDTLIQVIARIEVSIDY 182 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E +D + ++ + ++ L ++ + G++IR G K I+G N GKSSL NA Sbjct: 183 PEYDDDEPITN-DFEAELKDLLEELRELLRTADTGKMIREGVKTAIVGRPNVGKSSLLNA 241 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L +++ AIVTDIPGTTRDV+ L+++G ++ DTAGIRET+DIVEK G++R+ +E Sbjct: 242 LLEENKAIVTDIPGTTRDVVEAYLNIDGIPFQLLDTAGIRETEDIVEKIGVERSKSSIEE 301 Query: 299 ADLILLLKE-----INSKKEI-SFPKNIDFIFIGTKSDLYSTYTEEY--DHL-------I 343 ADL+L+L + ++ +EI KN I+I K+DL + T+E H + Sbjct: 302 ADLVLMLVDSHVGLLDKDQEILEQVKNKHVIYIFNKTDLENNITQEMLETHFSNGEVIKV 361 Query: 344 SSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402 S+ GL EL +K ++ + S++R L ++ LE ++ + GL Sbjct: 362 SAKEQSGLNELRQAMKHFVIKGSAAVHNEATISNQRQKQSLINAIKSLEKV-IDAIELGL 420 Query: 403 --DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D +A +L A LG I G E++++ +FS+FC+GK Sbjct: 421 PEDCLAIDLHDAFGHLGMIVGESLKEEIINQLFSRFCLGK 460 >gi|71901963|ref|ZP_00684014.1| tRNA modification GTPase TrmE:Small GTP-binding protein domain:GTP-binding [Xylella fastidiosa Ann-1] gi|71728268|gb|EAO30448.1| tRNA modification GTPase TrmE:Small GTP-binding protein domain:GTP-binding [Xylella fastidiosa Ann-1] Length = 451 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 144/434 (33%), Positives = 226/434 (52%), Gaps = 19/434 (4%) Query: 20 ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGED 79 I IIR+SG + + PR A F +D +++D GL I FP+P SFTGED Sbjct: 24 IGIIRISGSQIKTIATGLGMTTLR-PRYAHYTRFLDVDDQVIDDGLAIWFPAPHSFTGED 82 Query: 80 SAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET 139 E HG ++ +L + R A PGEFS RAF NGK+DL++AE++AD+I + Sbjct: 83 VLELQGHGSPLLLRQLLTRCLDL-GARQARPGEFSERAFLNGKLDLIQAEAIADMIGAAD 141 Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFL 199 R + + G S +L +R +EA +DF++E + ++ + L Sbjct: 142 LRSARAARRSLDGVFSRRCEALAQELVRLRIHVEATIDFADES-LDTLDRAQIRTSLQTL 200 Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259 +++ + + G+ + +G V++G N GKSSL NAL D AIVTD+PGTTRD L Sbjct: 201 NVELTQLLRDAEHGKRLCDGLYTVLVGPPNVGKSSLLNALIGSDRAIVTDVPGTTRDTLR 260 Query: 260 IDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL-----KEINS---- 310 + G + DTAG+R D +E+EG++RT E++ ADL L++ +I S Sbjct: 261 ESVHFHGLEFVLVDTAGLRGEGDAIEREGMRRTLNELQRADLALVVLDACDPQIGSLALA 320 Query: 311 KKEISFPKNIDFIFIGTKSDLYSTYTEEYDH---LISSFTGEGLEELINKIKSILSNK-F 366 S P+ ++I K DL + D +S+ TG GL+ L +++++L + Sbjct: 321 DALTSVPR---VLWIHNKLDLLTEPPSVLDTDVIPVSAMTGAGLDTLKTRLRTLLLGETV 377 Query: 367 KKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVE 426 + + + RH+ L +T ++ A+ L++ AE LRLA +LG+I G + + Sbjct: 378 ETIEGEFSARLRHVQALQRTAAHVTDANAQFAYEHLELTAEELRLAYKALGEINGSMSPD 437 Query: 427 QLLDIIFSKFCIGK 440 +LL IFS FCIGK Sbjct: 438 ELLGRIFSNFCIGK 451 >gi|288801153|ref|ZP_06406609.1| tRNA modification GTPase TrmE [Prevotella sp. oral taxon 299 str. F0039] gi|288332087|gb|EFC70569.1| tRNA modification GTPase TrmE [Prevotella sp. oral taxon 299 str. F0039] Length = 456 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 168/474 (35%), Positives = 256/474 (54%), Gaps = 52/474 (10%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFG--- 55 MN+ +TI A++T A AI +IR+SG + + F K A+ R FG Sbjct: 1 MNN-NDTICALAT-AKGGAIGVIRISGENAINIVAKCFEAASGKELEEMAAQRIIFGNIK 58 Query: 56 -LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114 +G I+D+ L+ VF +P S+TGE++ E HG ++N IL+ L K R A PGEF+ Sbjct: 59 DEEGNIIDEVLVSVFRAPHSYTGENTIEISCHGSTYIINTILQNLIKR-GCRQALPGEFT 117 Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174 +R+F NGK+DL +AE++ADLI+S + +L++ + G SS + KL I S IE Sbjct: 118 QRSFLNGKMDLSQAEAVADLIASTNKATHQLALGQLRGYFSSELTELRKKLLKITSLIEL 177 Query: 175 DLDFSEEEDVQNFSSKEVLNDIL-FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233 +LDFS++ DV F+ +E L ++ + I + + G+ I+NG + I+G +N GKS Sbjct: 178 ELDFSDQ-DV-TFADREELAELAQHINKKIKTLAKSFETGQAIKNGISVAIIGKTNVGKS 235 Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293 +L N L K++ AIV+DI GTTRDV+ +++ + DTAGIR TDD VE GI+RT+ Sbjct: 236 TLLNCLLKEERAIVSDIHGTTRDVIEDTIEINNITFRFIDTAGIRNTDDTVENLGIERTY 295 Query: 294 LEVENADLIL-LLKEINSKKEISFPK----NIDFIFIGTKSDLYSTYTEEYDHLISSFTG 348 ++ A +IL ++ EI +K+EI + N I + KSD SF Sbjct: 296 KKLSEAIIILWVVDEIPTKEEIVEMQKQTINKKLIIVCNKSDEKQL----------SFPI 345 Query: 349 EGLEELINKIKSILSNKFKK----------LPFSIP---------SHKRHLYHLSQTVRY 389 +G+++ I I SI S KFK+ IP ++ RH L + Sbjct: 346 DGIKD-IAPIVSI-SAKFKENIECLEETIYTAADIPDVHENDVIVTNARHYEALIRAQES 403 Query: 390 LE--MASLNEKDCGLDIIAENLRLASVSLGKITGC-VDVEQLLDIIFSKFCIGK 440 +E + +N D D+++E+LR VSL +ITG + ++L IF FCIGK Sbjct: 404 IERVIEGIN-NDLSGDLLSEDLRQCLVSLAEITGGFITSNEVLGNIFKHFCIGK 456 >gi|322372979|ref|ZP_08047515.1| tRNA modification GTPase TrmE [Streptococcus sp. C150] gi|321278021|gb|EFX55090.1| tRNA modification GTPase TrmE [Streptococcus sp. C150] Length = 456 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 142/457 (31%), Positives = 254/457 (55%), Gaps = 20/457 (4%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLDGR 59 + E +TI A+ST AI I+RLSG + + K K ++ Y ++ Sbjct: 3 ITKEFDTITAISTPLGEGAIGIVRLSGTDAIAIANKVFKGKNLETVDSHTINYGHIVEND 62 Query: 60 -ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 I+D+ ++ V +P++FT ED E + HGG+AV N IL+ L + R+A PGEF++RAF Sbjct: 63 DIIDEVMVSVMRAPKTFTREDVVEINTHGGVAVTNEILQLLIR-SGARMAEPGEFTKRAF 121 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG++DL +AE++ DLI ++T+ +++ + G L +L ++ + + +E ++D+ Sbjct: 122 LNGRVDLTQAEAVMDLIRAKTDKAMAVAVSQLDGSLKNLINNTRQEILNTLAQVEVNIDY 181 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E +DV+ ++ V + + + ++ K G+I+R G I+G N GKSSL N Sbjct: 182 PEYDDVEEVTTNLVREKTQEFQVLLENLLATAKRGKILREGLSTAIIGRPNVGKSSLLNN 241 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L +++ AIVTDI GTTRDV+ ++++G +K+ DTAGIR+TDD+VEK G++R+ +E Sbjct: 242 LLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRDTDDVVEKIGVERSKKALEE 301 Query: 299 ADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDL-YSTYTEEYDH---LISSF 346 ADL+LL+ +N+ + ++ +N + I + K+DL + EE IS Sbjct: 302 ADLVLLV--LNNSEPLTEQDRTLLDISQNSNRIILLNKTDLPQAIQLEELPEDVIPISVL 359 Query: 347 TGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLD 403 E ++++ +I + + + + S+ RH+ + + + LE + E +D Sbjct: 360 KNENIDKIEERINQLFFDNAGLVEKDATYLSNARHISLIEKALESLEAVNQGLELGMPVD 419 Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++ ++ LG+ITG ++L+ +FS+FC+GK Sbjct: 420 LLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 456 >gi|27262204|gb|AAN87383.1| thiopene and furan oxidation protein ThdF [Heliobacillus mobilis] Length = 472 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 160/477 (33%), Positives = 247/477 (51%), Gaps = 52/477 (10%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL-----DG 58 +TI AV+T I I+R+SGP +V + F+ + S G DG Sbjct: 6 DTIAAVATAIGEGGIGIVRVSGPDAKEVIQKVFLPRYGSSVDSWTSHTLHLGHVVHPDDG 65 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 ++D+ L P SFT ED EFH HGG V L + + +RLA PGEF+RRAF Sbjct: 66 HVIDEVLCAWMAGPHSFTTEDVVEFHCHGGSVPVRETLNAVLR-AGVRLAEPGEFARRAF 124 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR-------SF 171 G++DL +AE++ +I S+T +G+ +S L GQ +++ +R + Sbjct: 125 LGGRLDLAQAEAIIGIIRSKTR-------DGLGAAVSQLEGQLSRRISKVRNEILAVLAH 177 Query: 172 IEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAG 231 +EA +DF EE D+ + + + + D+ + +I +++ + G +++ G++ VI G N G Sbjct: 178 LEALIDFPEE-DLPDITPERLSKDVQAIFMEIQRLLNRSQTGRVLQEGWRTVIAGRPNVG 236 Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR 291 KSSL NAL + AIVTDIPGTTRD + +++ G +++ DTAGIRET+D+VEK G+++ Sbjct: 237 KSSLLNALLDEQRAIVTDIPGTTRDAIEEFIEIGGIPLRLVDTAGIRETEDLVEKIGVEK 296 Query: 292 TFLEVENADLILLLKE-----INSKKEI--SFPKNIDFIFIGTKSDLYSTYTEEY----- 339 T +E ADL+L + + N +E+ S + + + KSDL +E Sbjct: 297 TREYMEKADLVLYVLDGSDELSNDDEELLRSLQERPSVVLV-NKSDLAIRRLDEQQLRAV 355 Query: 340 --DHLI---SSFTGEGLEELINKIKSILSNKFKKLPFSI--PSHKR-HLYHLSQTVRYLE 391 D LI S+ G GLEEL +I+ ++ SI P+ R L ++ LE Sbjct: 356 IGDKLIIYMSAKEGWGLEELAVQIRRLVYKDEAGNSLSIMDPTESRLDLITQARHREALE 415 Query: 392 MAS--LNEKDCGL------DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A + GL D + +L+ A +LG+I G E +LD IFS FCIGK Sbjct: 416 RAQSHIRSVQSGLEMALSPDFLTIDLKAAWEALGEIIGETVGEDILDKIFSSFCIGK 472 >gi|328958785|ref|YP_004376171.1| tRNA modification GTPase MnmE [Carnobacterium sp. 17-4] gi|328675109|gb|AEB31155.1| tRNA modification GTPase MnmE [Carnobacterium sp. 17-4] Length = 462 Score = 207 bits (527), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 151/464 (32%), Positives = 248/464 (53%), Gaps = 26/464 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK-KKPFPRKASLRYFFG---- 55 M E ETI A+ST AI I+RLSG ++ + + K K + S +G Sbjct: 1 MTLEFETIAAISTPPGEGAIGIVRLSGEQAIEIADRVYKSGSKALAEQKSHTIHYGHIEN 60 Query: 56 -LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114 +D+ ++ V P++FT ED E + HGGI VN +L+ + + RLA PGEF+ Sbjct: 61 PKTNETIDEVMVSVMREPKTFTREDVVEINCHGGITSVNQVLQCVLQ-NGARLAEPGEFT 119 Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174 +RAF NG+IDL +AE++ DLI ++T+ ++++ + G LS+L + + +E Sbjct: 120 KRAFLNGRIDLSQAEAVMDLIRAKTDRAMHVALKQLDGNLSNLIRNLRLDILDTLAQVEV 179 Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234 ++D+ E +DV+ +SK ++ +K I + G+I+R+G I+G N GKSS Sbjct: 180 NIDYPEYDDVEEMTSKLLIEKAKLVKASIQQLLETASQGKILRDGLATAIIGRPNVGKSS 239 Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294 L N L ++ AIVTDI GTTRDV+ + ++G +K+ DTAGIRET+DI+E+ G++R+ Sbjct: 240 LLNYLLDEEKAIVTDIAGTTRDVIEEYISVKGVPLKLVDTAGIRETEDIIERIGVERSRQ 299 Query: 295 EVENADLILLL------KEINSKKEISFPKNIDFIFIGTKSDLYSTYT-EEYDHLI---- 343 + +ADL+LL+ I K I I I K DL + E + L+ Sbjct: 300 ALSDADLVLLVFNQSEPLTIEDKALIEATSQHHRIIILNKMDLPNKLDLTELEVLVDPES 359 Query: 344 ----SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398 S + G++ L KI ++ + + + + S+ RH+ L+ L+ +N Sbjct: 360 IVKTSILSKSGVDVLEKKIAALFFTGQTGERDATYVSNVRHIALLNDAEEALDEV-INGV 418 Query: 399 DCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + G+ D+I ++ LG+ITG ++LL +FS+FC+GK Sbjct: 419 EAGMPVDLIQIDMTRCWDLLGEITGDSVQDELLTQLFSQFCLGK 462 >gi|302035744|ref|YP_003796066.1| tRNA modification GTPase [Candidatus Nitrospira defluvii] gi|300603808|emb|CBK40140.1| tRNA modification GTPase [Candidatus Nitrospira defluvii] Length = 476 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 142/402 (35%), Positives = 217/402 (53%), Gaps = 26/402 (6%) Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 +LD+ L++V P S+TGED E HGG V++ + L RLA PGEF++RAF Sbjct: 80 VLDEALVVVMRGPHSYTGEDVVEVQCHGGPVVLDQLCRSLISA-GARLAEPGEFTKRAFL 138 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NG++DL +AE++ D I ++T ++ GELS + L + IEA LDF+ Sbjct: 139 NGRLDLAQAEAVLDTIRAKTARSLAIAQSQRRGELSREVEETRSGLVVALAHIEAALDFA 198 Query: 180 EEEDVQNFSSKEVLN--DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 EE D+ E+L D +K + + G+ G I R G + ILG N GKSSL N Sbjct: 199 EE-DIAFVRQDELLRLLDETLIK--LRGLVQSGEEGRIWREGAAVAILGRPNVGKSSLMN 255 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 AL + D AIVT IPGTTRD+L +++ G V++ DTAGIR TDD VE EGI+R+ L E Sbjct: 256 ALLRSDRAIVTPIPGTTRDLLEEVVNIHGIPVRLFDTAGIRTTDDPVETEGIRRSHLAWE 315 Query: 298 NADL---------------ILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL 342 +ADL +LLL+ + + + D +K DL Sbjct: 316 DADLALILLDSSQPMLESDLLLLRRSEAARALLVLNKCDLPSRISKEDLTRVCPVSAGLF 375 Query: 343 -ISSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEK 398 IS+ GL+ L + I S ++ + + ++ RH + ++ +E A S++ Sbjct: 376 EISAKMHIGLDGLRDAISSRLMPRGLESREGVLVTNLRHAAAFERALQGVEQARQSVDAG 435 Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G +++A +LR+A+ +LG+ITG + +++L+ IF++FCIGK Sbjct: 436 RAG-ELVAMDLRIAADALGEITGAITTDEILERIFAEFCIGK 476 >gi|71005678|ref|XP_757505.1| hypothetical protein UM01358.1 [Ustilago maydis 521] gi|46096628|gb|EAK81861.1| hypothetical protein UM01358.1 [Ustilago maydis 521] Length = 531 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 131/341 (38%), Positives = 196/341 (57%), Gaps = 40/341 (11%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK--KKKPFPR-----KASLRYFFGLD 57 +TIFA++TGA + +++IR+SGP V +C+ +P+ R K LR Sbjct: 81 NDTIFALATGAGRAGVAMIRISGPLTSDVYLALCRTSHSQPYTRLPPSHKLVLRNLHHPH 140 Query: 58 G-RILDKGLLIV-FPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP-NLRLANPGEFS 114 +LD G I+ FP+ S+TGE+S E H+HGG+A ++G+L+ L +R+A PGEF+ Sbjct: 141 TFELLDAGAGIIHFPAGSSYTGEESLELHIHGGLATISGVLDALVVFGGRMRIAEPGEFT 200 Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174 RRAFENG++DL AE+L L+ +ET +QRR++++G SG + + + + L + +EA Sbjct: 201 RRAFENGRLDLASAEALHGLVLAETAVQRRVALQGTSGLQTERFERIREVLLSAMAMVEA 260 Query: 175 DLDFSEEEDVQNFSSK------EVLNDILFLKNDISSHISQGK-------------LGEI 215 +DFS+E V+ + K + L +L + ISS + +GEI Sbjct: 261 LIDFSDEGGVEEGTWKVARESVDALAVMLRTELGISSTGTDSNSDRDNKIKRQPRHIGEI 320 Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 + G + + G NAGKSSL N LA ++ AIV+DIPGTTRDVL + LDL GY V + DTA Sbjct: 321 LSTGIHLALYGPPNAGKSSLLNRLADRNAAIVSDIPGTTRDVLQVHLDLAGYKVIVYDTA 380 Query: 276 GIRETD-----------DIVEKEGIKRTFLEVENADLILLL 305 G+R+ D +E+ GI+R V NADL LL+ Sbjct: 381 GMRDESQLAHGSDQPSLDEIERIGIRRAKDAVSNADLALLV 421 >gi|251778655|ref|ZP_04821575.1| tRNA modification GTPase TrmE [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082970|gb|EES48860.1| tRNA modification GTPase TrmE [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 456 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 161/463 (34%), Positives = 263/463 (56%), Gaps = 33/463 (7%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA----SLRY--FFGL 56 E +TI ++T +SIIR+SG + I K K ++RY L Sbjct: 2 REFDTICGIATPIGEGGVSIIRISGSKALDIISKIFVGKNNIDLKQMKTYTMRYGHIIEL 61 Query: 57 DGR-ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 + + ++D+ ++ P S+T ED E + HGG+ N ++ ++ K R+A PGEF++ Sbjct: 62 ESKDVIDEVIISYMKGPHSYTTEDIIEINCHGGVISTNSVMNQVIK-AGARVAEPGEFTK 120 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG+IDL +AE++ D+I ++T++ + ++ G LS+ + L + + IE Sbjct: 121 RAFLNGRIDLSQAEAVIDIIKAKTDLSMKSALMQSGGALSTQIKEIRQYLLNTLALIEYG 180 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKL-------GEIIRNGYKIVILGHS 228 +DF+E+++ + + +L +K+ I + I + K G+IIR+G +VI+G Sbjct: 181 VDFTEDDEDIDDTL------VLRVKDGIKTTILKVKELLKGADEGKIIRDGLNVVIIGKP 234 Query: 229 NAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEG 288 N GKSSL N L K+ AIVTDIPGTTRD++ L+++G +KI+DTAGIRET+D VEK G Sbjct: 235 NVGKSSLLNVLLKEKRAIVTDIPGTTRDIIEEYLNIDGIPIKITDTAGIRETEDTVEKIG 294 Query: 289 IKRTFLEVENADLILLL------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTE-EYDH 341 ++R+ ++E ADLI+L+ E K+ I+ K+ + I + K+DL + + D+ Sbjct: 295 VERSREKIEEADLIILILDSSRDLEEEDKEIINTIKDKNHIVLLNKTDLDRKIADIDLDN 354 Query: 342 L--ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399 IS+ TG G+EEL NKIK + + I S+ RH L +++ E+A L+ + Sbjct: 355 QIKISAKTGYGIEELKNKIKELFFSGDINSESLIVSNVRHKQALYRSLENCEVA-LDRVN 413 Query: 400 CG--LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LD+I+ + A +LG+ITG E +L+ IFS+FC+GK Sbjct: 414 ANEFLDLISIYVTSAMKALGEITGDELEEDVLNKIFSEFCVGK 456 >gi|331002965|ref|ZP_08326477.1| tRNA modification GTPase TrmE [Lachnospiraceae oral taxon 107 str. F0167] gi|330413009|gb|EGG92384.1| tRNA modification GTPase TrmE [Lachnospiraceae oral taxon 107 str. F0167] Length = 456 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 158/461 (34%), Positives = 247/461 (53%), Gaps = 35/461 (7%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG---LDGRILD 62 +TI A++T S I IIR+SG + + I KK S +G + I+D Sbjct: 5 DTIAAIATALGESGIGIIRISGEDAVSIADKIYNGKKTLREADSHTINYGHIFFEEEIID 64 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 + L+++ +P +FTGED+ E + HGGI ++ IL + R+A PGEF++RAF NGK Sbjct: 65 EVLVMLMKAPRTFTGEDTVEINCHGGILILEKILHAVI-ASGARMAFPGEFTKRAFLNGK 123 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 +DL +AE++ D+I ++ ++ + + +SG L+ K+ +FIEA LD E Sbjct: 124 MDLSQAEAVIDIIEAKNDLALKAGIRQLSGALTENIKDIRAKILEQIAFIEAALDDPEHY 183 Query: 183 DVQNFSSK------EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 + +S K +++ I +LK K G II+ G VI+G NAGKSS+ Sbjct: 184 SLDGYSKKLRKIVNKLITRIEYLKKSF-------KDGSIIKEGINTVIIGKPNAGKSSIL 236 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N L++ D AIVTDI GTTRD LT ++ L G + I+DTAGIR+TDD+VE G+++ Sbjct: 237 NLLSRTDRAIVTDIAGTTRDTLTENIKLSGISLNITDTAGIRQTDDVVESIGVQKAIEAS 296 Query: 297 ENADLILLLKE---INSKKEISF---PKNIDFIFIGTKSDL--------YSTYTEEYDHL 342 NADL L++ + K++I KN + I + KSD Y+ + + Sbjct: 297 NNADLNLVVIDGLMPLDKEDIELLESVKNKNAIILINKSDKELKIGVEDIKKYSSKDVII 356 Query: 343 ISSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401 S+ G++EL N IKS +SN+ I ++ RH +++T+ LEM ++ D G Sbjct: 357 FSAKENIGVDELENMIKSKFISNEINFNDQVIITNIRHQEIINETLESLEMC-ISSIDEG 415 Query: 402 L--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D +L +LG+I G + +++ IFSKFC+GK Sbjct: 416 YEEDFFTIDLLNGYEALGEIIGETVDDDVVNEIFSKFCMGK 456 >gi|330898612|gb|EGH30031.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. japonica str. M301072PT] Length = 294 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 116/293 (39%), Positives = 175/293 (59%), Gaps = 3/293 (1%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 MN +ETI A++T + I+R+SGP + E I + PR A F G++ Sbjct: 1 MNVPRETIAAIATAQGRGGVGIVRMSGPLAGKAAEAIIGRILK-PRFAHYGPFVDDAGQV 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG V++ +L+ ++ + RLA PGEFS RAF N Sbjct: 60 LDEGIALYFPGPNSFTGEDVLELQGHGGPIVLDMLLQRCLQLGS-RLARPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + + R ++ + G S +KL +R ++EA +DF E Sbjct: 119 DKLDLAQAEAIADLIEASSAQAARNALRSLQGAFSRRVDNLTEKLISLRIYVEAAIDFPE 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + + VL I ++ ++S+ + + G ++R+G +VI G NAGKSSL NALA Sbjct: 179 EE-IDFLADGHVLKMIDDVRAELSTVLREAGQGALLRDGMTVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293 ++ AIVT+I GTTRDVL + ++G + + DTAG+R+T D VE G++R Sbjct: 238 GREAAIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLRDTQDQVEMIGVQRAL 290 >gi|116493570|ref|YP_805305.1| tRNA modification GTPase TrmE [Pediococcus pentosaceus ATCC 25745] gi|122264966|sp|Q03D59|MNME_PEDPA RecName: Full=tRNA modification GTPase mnmE gi|116103720|gb|ABJ68863.1| tRNA modification GTPase trmE [Pediococcus pentosaceus ATCC 25745] Length = 464 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 147/460 (31%), Positives = 255/460 (55%), Gaps = 25/460 (5%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLD---GR 59 E +TI A+ST ISIIR+SG + I + K + ++ Y +D G Sbjct: 7 EFDTIAAISTPPGEGGISIIRISGVDALKTASQIYRGKDLNKVNSHTINYGHIIDPENGN 66 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 +D+ ++ V +P ++T ED E + HGGI N IL+ + + + RLA PGEF+ RAF Sbjct: 67 EVDEVMVSVMRAPHTYTKEDIVEINCHGGIVATNRILQIILGL-DARLAKPGEFTERAFL 125 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NG+IDL +AE++ DLI ++T+ +++++ + G LS L + + + +E ++D+ Sbjct: 126 NGRIDLSQAEAVMDLIRAKTDQSMKVALDQLDGNLSHLITNLRQNILDVLAQVEVNIDYP 185 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 E +DV+ +++ + + +K I +S K G+++R+G I+GH N GKSS+ N L Sbjct: 186 EYDDVETMTARLLKEKAIEVKAKIQQLLSTAKQGKVLRDGLATAIIGHPNVGKSSILNHL 245 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 +D AIVTD+ GTTRDV+ ++++G +K+ DTAGI ET+D VEK G+ R+ + A Sbjct: 246 LHEDKAIVTDVAGTTRDVIEEYVNVQGVPLKLVDTAGIHETEDKVEKIGVDRSRKALSQA 305 Query: 300 DLILLLKEI-----NSKKEISFPKN-IDFIFIGTKSDL--------YSTYTEEYDHLISS 345 DL++L+ + + +E+ N + I + KSDL Y ++ + + SS Sbjct: 306 DLVILVLDSSVPLRDEDRELLRETNHMQRIVVLNKSDLEVKINLNELQEYVDDKEIIKSS 365 Query: 346 FTGE-GLEELINKIKSI-LSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMASLNEKDCGL 402 G ++L ++I ++ + + +I ++ RH+ L Q L+ A L + G+ Sbjct: 366 AVSPLGTKDLEDRIAAMFFAGSIENTSNNIMVTNARHIGLLKQADTALD-AVLEGIETGM 424 Query: 403 --DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D++ ++ LG+ITG ++LLD +FS+FC+GK Sbjct: 425 PVDLVQIDMTRTWDLLGEITGDSYQDELLDQLFSQFCLGK 464 >gi|168362384|ref|ZP_02695563.1| tRNA modification GTPase TrmE [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|171903373|gb|EDT49662.1| tRNA modification GTPase TrmE [Ureaplasma urealyticum serovar 13 str. ATCC 33698] Length = 438 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 144/446 (32%), Positives = 233/446 (52%), Gaps = 22/446 (4%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRILDK 63 TI A++T + AI IIR+SGP F++ I K +K + + ++ + ++LD+ Sbjct: 3 TIVALATAPMNCAIHIIRISGPQAFEMINKISTTK---IKKETFKIWYTTLKDNDQVLDE 59 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 L+ F P++FTGED E + HGG+ V N I++ L K + A GEFSRRA N K+ Sbjct: 60 VLVNTFVGPKTFTGEDLVEINCHGGVIVANLIIKILIKY-GCQPAQRGEFSRRALLNKKM 118 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTH----IRSFIEADLDFS 179 DL + E++ +L++++ E LS++G+ G L Q I H I IE ++D+ Sbjct: 119 DLSKIEAINNLVNAKNE----LSVKGVIGALLGRVSQSISDFKHELFMIIGQIEVNIDYP 174 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 E +DV+ + + +L L I I Q K I G K++I+G N GKS+L NAL Sbjct: 175 EYDDVEQVDAINLKQRLLVLNEKIKKIIDQSKKFLPINKGIKVLIIGKPNVGKSTLLNAL 234 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 + AIVTDIPGTTRDV+ ++++ + I DTAGI T+D VE GI + + Sbjct: 235 CNEQKAIVTDIPGTTRDVIESSINIDNITLNILDTAGIHSTNDFVENLGINKAKELINKV 294 Query: 300 DLILLLKEINSKKEI---SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356 DL+L L N+++++ K+ + + TK DL Y + D + + ++ LI+ Sbjct: 295 DLVLYLVPANNQQDLELYDLIKDQKHLLVYTKKDLIDQYND--DQIYINAKDNDIQALID 352 Query: 357 KIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAENLRLASV 414 KIK + +F + +R + L ++ A N EK +D++ +L ++ Sbjct: 353 KIKELFYVQEFDNANIDVLQSQRQIGILENVNYLIDNAITNLEKGDTVDLVVADLEFCNL 412 Query: 415 SLGKITGCVDVEQLLDIIFSKFCIGK 440 L ++ G LD +F FC+GK Sbjct: 413 RLNELLGIGSEYDFLDDLFKNFCVGK 438 >gi|213389877|gb|ACJ46004.1| tRNA modification GTPase [Palm lethal yellowing phytoplasma] Length = 460 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 157/458 (34%), Positives = 250/458 (54%), Gaps = 23/458 (5%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQ-------VCEFICKKKKPFPRKASLRYFFGLD 57 ++TI A+ST +ISIIR+SGP + K ++ F LD Sbjct: 4 EDTIAAISTPLGTGSISIIRISGPEAIEKIGKIFKFKNSKKKNNLLKELSHTIHNGFILD 63 Query: 58 --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 G ILD L+ +F P SFTGED+ E + HGGI + +LE + + +R+A PGEFS+ Sbjct: 64 DKGEILDDVLISIFRKPNSFTGEDTIEINAHGGILITQLLLERVLSL-GIRMACPGEFSK 122 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF N KIDL +AES+ DLI ++ E +L+ G+ L + + + IE + Sbjct: 123 RAFLNNKIDLTQAESIMDLIHAQNEKALKLAQFGLQKNTFKLVSELQQDILTLLGEIEVN 182 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +D+ E +D+ N +++ +L L + I + ++ I+NG K +I+G N GKSSL Sbjct: 183 IDYPEYDDIPNITNQNILFRTKILIDKIQNILNCSIKNTFIKNGIKTLIIGKPNVGKSSL 242 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N L ++ +IV+DI GTTRD ++ ++++ G + + DTAGIRET D +EK GI++ Sbjct: 243 LNVLLNEERSIVSDIAGTTRDFVSENININGINLNLIDTAGIRETQDDLEKIGIQKAKKI 302 Query: 296 VENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYT----EEYDHLISS 345 +++A+L+LL+ + ++ E + +N I IG+KSDL + +E IS+ Sbjct: 303 LKDAELVLLILDQSNVLEREDEFLLKLTENHFRILIGSKSDLPNKLNISSLKENVIFISN 362 Query: 346 FTGEGLEELI-NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKDCGL 402 T +G+ L N +K NK K F+ S+ RH+ L + L M ++ ++ + Sbjct: 363 ITKKGINSLKENILKMFKLNKVKSKDFNYFSNARHIKQLKIALNSLIMMKKTITKQLMPI 422 Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 DI L+ A SLG+I G E L++ +FSKFC+GK Sbjct: 423 DIYTIYLKEAYESLGEILGSNVKESLINELFSKFCLGK 460 >gi|309804055|ref|ZP_07698136.1| tRNA modification GTPase TrmE [Lactobacillus iners LactinV 11V1-d] gi|308163823|gb|EFO66089.1| tRNA modification GTPase TrmE [Lactobacillus iners LactinV 11V1-d] Length = 461 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 151/465 (32%), Positives = 261/465 (56%), Gaps = 42/465 (9%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG-----LDGRI 60 +TI A++T ISIIR+SG + ++ I + + AS +G + + Sbjct: 9 DTIAAIATPIGEGGISIIRVSGENALEIVNKIFRGAN-LNKVASHTIHYGHIIDYANKDV 67 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+ L+ V +P++FT E++ E HGG+ V IL+ L R+A PGEF++RAF N Sbjct: 68 VDEVLVTVMLAPKTFTRENTVEVSCHGGLLVTEKILQ-LILDNGARMATPGEFTKRAFIN 126 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFIEADL 176 G+IDL +AES+ D+I ++T+ R+++M+ + G E+ L + ++ + H E ++ Sbjct: 127 GRIDLTQAESIMDIIEAKTDRARQVAMKQLEGGLLFEIRKLRQELLNTMAHE----EVNI 182 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D+ E D+ + +SKE+ + + +I ++ + G+++R+G I+G N GKSSL Sbjct: 183 DYPEY-DMDDVTSKEMYDKAQQVIKEIDKLLATAQEGKVVRSGLATAIVGRPNVGKSSLL 241 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N L+K++ AIVT+I GTTRD L + L+G L+K+ DTAGIR+TDDIVEK G++R+ + Sbjct: 242 NYLSKEEKAIVTNIAGTTRDTLEEYVSLKGILLKLIDTAGIRQTDDIVEKIGVERSKRAI 301 Query: 297 ENADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTYTEE-----YDHLI 343 +DL+LLL INS +E++ ++ I I K+D + T++ D I Sbjct: 302 TESDLVLLL--INSSEELTEEDQKLLELTQDKKRIVILNKADQVAKITKKDIQKITDSPI 359 Query: 344 SSFT------GEGLEELINKI--KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL 395 + + GLEE I + + I +K + + + + L ++ + ++ Sbjct: 360 VTISVLKKQNMTGLEEAIKSLFLQGIADSKSEVMVTN--QRQNDLLRKAKQSLIEAIEAI 417 Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 N+ + LD++ +L+ A SLG+ITG ++L+ +FSKFC+GK Sbjct: 418 ND-NMPLDLVQIDLKEAWDSLGEITGDTAPDELITQLFSKFCLGK 461 >gi|134301153|ref|YP_001114649.1| tRNA modification GTPase TrmE [Desulfotomaculum reducens MI-1] gi|189036201|sp|A4J9S1|MNME_DESRM RecName: Full=tRNA modification GTPase mnmE gi|134053853|gb|ABO51824.1| tRNA modification GTPase trmE [Desulfotomaculum reducens MI-1] Length = 461 Score = 207 bits (526), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 150/460 (32%), Positives = 249/460 (54%), Gaps = 27/460 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGL-----DG 58 +TI A++T +I +IR+SGP + + + + K K + +K + + +G G Sbjct: 4 DTIVAIATALGEGSIGVIRMSGPDAITIGKKVFRPKYNKEWYQKDNYKIIYGHVINPETG 63 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 I+D+ LL + P+SFT ED E HGGI + +LE + + R A PGEFS+R+F Sbjct: 64 EIIDEVLLSIMRGPKSFTAEDVIEISCHGGIIPLRKVLEVILR-NGARHAEPGEFSKRSF 122 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG++DL +AES+ D+I ++T+ ++++ + G+LS K+ + + IEA +DF Sbjct: 123 LNGRLDLAQAESIIDIIRAKTDAGAKIAVNQLGGKLSEKVNGLQHKVLGLLAKIEAIIDF 182 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E+ D+ + + + L +I ++ G+I R G K VI+G N GKSSL NA Sbjct: 183 PED-DIPEENLLGISKECNSLIKEIEHLLAYADTGKIYREGLKTVIVGKPNVGKSSLLNA 241 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L + AIVTDIPGTTRDV+ L ++G +KI DTAG+RET D+VEK G++++ + Sbjct: 242 LLHEQRAIVTDIPGTTRDVIEEILSIKGVPLKIIDTAGLRETQDLVEKIGVEKSRELLNQ 301 Query: 299 ADLILLLKEINS------KKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL---------- 342 AD++L + + + +K I K+ + + K D+ + ++ Sbjct: 302 ADIVLFVLDATTGISDEDRKVIDLIKDKKVLILINKIDITKNKIDSHEIRQLINFSEIIE 361 Query: 343 ISSFTGEGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-C 400 IS+ GL++L I ++ K S+ RH + L + +++L AS ++ Sbjct: 362 ISAQKEIGLDKLEETIFNMVVEGKITTTDSIFVSNSRHKHALERAMQHLLEASKGLQEYV 421 Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D+++ +L+ + LG+ITG E L+D IFS FCIGK Sbjct: 422 PADLVSIDLKSSWEILGEITGNSVTEDLIDRIFSDFCIGK 461 >gi|187932414|ref|YP_001887734.1| tRNA modification GTPase TrmE [Clostridium botulinum B str. Eklund 17B] gi|187720567|gb|ACD21788.1| tRNA modification GTPase TrmE [Clostridium botulinum B str. Eklund 17B] Length = 456 Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 160/465 (34%), Positives = 265/465 (56%), Gaps = 37/465 (7%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA----SLRY--FFGL 56 E +TI ++T +SIIR+SG + I K K ++RY L Sbjct: 2 REFDTICGIATPIGEGGVSIIRISGSKALDIISKIFVGKNNIDLKQMKTYTMRYGHIIEL 61 Query: 57 DGR-ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 + + ++D+ ++ P S+T ED E + HGG+ N ++ ++ K +R+A PGEF++ Sbjct: 62 ESKDVIDEVIISYMKGPHSYTTEDIIEINCHGGVISTNSVMNQVIK-AGVRVAEPGEFTK 120 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG+IDL +AE++ D+I ++T++ + ++ G LS + L + + IE Sbjct: 121 RAFLNGRIDLSQAEAVIDIIKAKTDLSMKSALMQSGGALSKQIKEIRQYLLNTLALIEYG 180 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKL-------GEIIRNGYKIVILGHS 228 +DF+E+++ + + +L +K+ I + I + K G+IIR+G +VI+G Sbjct: 181 VDFTEDDEDIDDTL------VLRVKDGIKTTILKVKELLKGADEGKIIRDGLNVVIIGKP 234 Query: 229 NAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEG 288 N GKSSL N L K+ AIVTD+PGTTRD++ L+++G +KI+DTAGIRET+D VEK G Sbjct: 235 NVGKSSLLNVLLKEKRAIVTDVPGTTRDIIEEYLNIDGIPIKITDTAGIRETEDTVEKIG 294 Query: 289 IKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTKSDLYSTYTE-EY 339 ++R+ ++E ADLI+L+ ++S +E I+ K+ + I + K+DL + + Sbjct: 295 VERSREKIEEADLIILI--LDSSRELEEEDKEIINTIKDKNHIVLLNKTDLDRRIADIDL 352 Query: 340 DHL--ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SL 395 D+ IS+ TG G+EEL NKIK + + I S+ RH L +++ E+A + Sbjct: 353 DNQINISAKTGYGIEELKNKIKELFFSGDINSESLIVSNVRHKQALYRSLENCEIALDRV 412 Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 N + LD+I+ + A +LG+ITG E +L+ IFS+FC+GK Sbjct: 413 NANEF-LDLISIYVTSAMKALGEITGDELEEDVLNKIFSEFCVGK 456 >gi|118582021|ref|YP_903271.1| tRNA modification GTPase TrmE [Pelobacter propionicus DSM 2379] gi|205415790|sp|A1AV43|MNME_PELPD RecName: Full=tRNA modification GTPase mnmE gi|118504731|gb|ABL01214.1| tRNA modification GTPase trmE [Pelobacter propionicus DSM 2379] Length = 456 Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 146/417 (35%), Positives = 227/417 (54%), Gaps = 32/417 (7%) Query: 49 SLRYFFGL-----DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP 103 S R+++G G ++D+ + ++ +P S+T ED E H HGG+ VV IL L Sbjct: 47 SHRFYYGTLIDIQTGAVVDEVMAVIMRAPHSYTREDVLELHCHGGMLVVERILS-LVLRA 105 Query: 104 NLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWID 163 RLA PGEF+RRAF NG+IDL++AES+ D+IS++T+ L+ G LSS + Sbjct: 106 GARLAEPGEFTRRAFLNGRIDLVQAESVMDIISAQTDAALALAQRQRGGVLSSRIAEARQ 165 Query: 164 KLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIV 223 L H + IEA +DF E+ D+ + + + + + I + G ++R G ++ Sbjct: 166 LLLHALALIEAYIDFPED-DLGETDVESIRSSVEGARTHIRRLLEDFNEGRLLREGISVL 224 Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 I+G NAGKSSL N L ++ AIVT +PGTTRD++ ++L G V++ DTAGIR T+D+ Sbjct: 225 IIGKPNAGKSSLLNRLLNENRAIVTHLPGTTRDIIEETINLGGLAVRLLDTAGIRHTEDV 284 Query: 284 VEKEGIKRTFLEVENADLILLLKE------INSKKEISFPKNIDFIFIGTKSDLYST--Y 335 +E+EGI R ++ ADLIL + + + + + F+ +K+DL Sbjct: 285 IEQEGINRALEKIPQADLILFVLDGSRPFGPEDRLILDALQGNRFVAAISKADLPRVLEL 344 Query: 336 TEEYDHL----ISSFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRY 389 E +L S+ +GEG+++L + ++S+ S + S RH LS Sbjct: 345 PSECCNLPQVSFSAESGEGVDDLKSTVRSLFVSSQAIDNREYVAISRVRHRDALSSA--- 401 Query: 390 LEMASLNEKDCGLD------IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 SL+ GLD ++A +LR A S+G++TG V E +LD+IFS FCIGK Sbjct: 402 --DGSLSRFRQGLDSGASLDLLALDLREALASVGEVTGQVTNEDVLDLIFSSFCIGK 456 >gi|199598240|ref|ZP_03211661.1| tRNA modification GTPase TrmE [Lactobacillus rhamnosus HN001] gi|199590843|gb|EDY98928.1| tRNA modification GTPase TrmE [Lactobacillus rhamnosus HN001] Length = 462 Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 146/457 (31%), Positives = 246/457 (53%), Gaps = 25/457 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLD---GRIL 61 +TI A+ST AISI+RLSG + + K K K+ ++ Y +D G ++ Sbjct: 9 DTIAAISTPPGEGAISIVRLSGETAVATANKVFKGKNLTQVKSHTIHYGHIVDPETGDLI 68 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121 D+ ++ V +P++FT ED E + HGGI N IL+ L R+A PGEF++RAF NG Sbjct: 69 DEVMVSVMLAPKTFTREDVVEINCHGGIVATNRILQLLLG-EGARMAEPGEFTKRAFLNG 127 Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181 +IDL EAES+ DLI ++T+ ++++ + G L L Q ++ + + +E ++D+ E Sbjct: 128 RIDLTEAESVMDLIRAKTDRAMQVAVNQLDGNLHHLIKQLRQEILEVLAQVEVNIDYPEY 187 Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 D ++K +L +K I ++ G+++R G I+G N GKSSL N + Sbjct: 188 -DTDEMTTKMLLEKAQTVKKAIEQLLTTASQGKVLREGLATAIVGRPNVGKSSLLNHMLH 246 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 +D AIVTD+ GTTRDVL +++ G +K+ DTAGI +T D VEK G++R+ + ADL Sbjct: 247 EDKAIVTDVAGTTRDVLEEYVNVRGVPLKLVDTAGIHDTTDKVEKIGVERSRQAITQADL 306 Query: 302 ILLLKE------INSKKEISFPKNIDFIFIGTKSDLYSTYTE-------EYDHLISSF-- 346 ILL+ + K+ ++ + I + K DL + + D +I + Sbjct: 307 ILLVLDQSEPLTTEDKQLLAATADKKRIIVLNKQDLPARLDTTALLQLVDADEIIKTAIP 366 Query: 347 TGEGLEELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLE--MASLNEKDCGLD 403 T +G++ L +I + + ++ S+ R + L Q + L+ MA ++ +D Sbjct: 367 TSDGMDALDERIAKLFFGGIENSQGTVMVSNARQIGLLRQASKSLDAVMAGIH-AGMPID 425 Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++ ++ A LG+ITG ++L+ +FS+FC+GK Sbjct: 426 LVQIDMTAAWDKLGEITGESAPDELITQLFSQFCLGK 462 >gi|270293804|ref|ZP_06200006.1| tRNA modification GTPase TrmE [Bacteroides sp. D20] gi|270275271|gb|EFA21131.1| tRNA modification GTPase TrmE [Bacteroides sp. D20] Length = 464 Score = 206 bits (525), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 156/467 (33%), Positives = 246/467 (52%), Gaps = 36/467 (7%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFI---CKKKKPFPRKASLRYFFGL---DG 58 ++TI A++T A AI IR+SGP ++ I +K K FG + Sbjct: 3 QDTICAIAT-AQGGAIGCIRVSGPDAIEITSRIFTPARKGKKLKDAKPYTLTFGHIHEEE 61 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 I+D+ L+ +F +P S+TGEDS E HG ++ +L+ L RLA PGE+++RAF Sbjct: 62 NIIDEVLVSLFRAPHSYTGEDSTEIMCHGSSYILQKVLQLLIG-NGCRLAAPGEYTQRAF 120 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 GK+DL +AE++ADLI+S + RL+M M G S D+L H S IE +LDF Sbjct: 121 LGGKMDLSQAEAVADLIASTSAATHRLAMSQMRGGFSKELASLRDQLLHFTSLIELELDF 180 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 S+ E+++ E+ ++ IS + +G I+NG + I+G +NAGKS+L NA Sbjct: 181 SDHEELEFADRSELCLLADGIEQVISRLVQSFSVGNAIKNGVPVAIIGETNAGKSTLLNA 240 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L ++ AIV+DI GTTRDV+ ++L G + DTAGIRET+D +E GI+RTF ++E Sbjct: 241 LLNEERAIVSDIHGTTRDVIEDTVNLGGITFRFIDTAGIRETNDTIENLGIERTFQKLEQ 300 Query: 299 ADLIL-LLKEINSKKEIS------FPK--NIDFIFIGTKSDLY--------STYTEEYDH 341 A+++L ++ N+ +I P+ I + K+DL S++T + Sbjct: 301 AEIVLWIVDATNAVSQIPQLTTQILPRCEGKRLILVFNKTDLVQDASTIPNSSFTVAATN 360 Query: 342 LIS-SFTGEGLEELINKIKSILSNKFKKLPF-----SIPSHKRHLYHLSQTVRYLE--MA 393 + S + +G L +K++ +L + LP I ++ RH L+ + + Sbjct: 361 VQCISISAKGRTNL-DKLQQMLISA-ANLPTVTQNDVIVTNIRHYEALTHALEAIHRVQQ 418 Query: 394 SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L E G D +++++R L I G V + +L IF FCIGK Sbjct: 419 GLAENLSG-DFVSQDIRECIFHLSDIAGEVTNDMVLGNIFEHFCIGK 464 >gi|254445762|ref|ZP_05059238.1| tRNA modification GTPase TrmE [Verrucomicrobiae bacterium DG1235] gi|198260070|gb|EDY84378.1| tRNA modification GTPase TrmE [Verrucomicrobiae bacterium DG1235] Length = 452 Score = 206 bits (525), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 148/451 (32%), Positives = 242/451 (53%), Gaps = 19/451 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVC-EFICKKKKPFPRKASLRYFFGLDGRILDKG 64 +T+ A++T A SAI++IR++G C Q+ + K+P PR AS + +LD Sbjct: 5 DTVAALATPAGESAIAMIRVTGGLCEQIANDAFGLAKRPAPRHASHGSYRSASKEVLDDV 64 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 + F P+S+TGED E HG + +LE+L + R + PGEF+RRAF NG++D Sbjct: 65 VYTFFSGPKSYTGEDVLEICCHGNPLIATRVLEDLLER-GCRQSEPGEFTRRAFLNGRMD 123 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ +LI + ++ R++ + G Q +L + +EA +DF +E D+ Sbjct: 124 LTQAEAVMELIQARSDRGIRVANNQLRGHFGKQLEQLKQRLLATVATVEAYIDFPDE-DL 182 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + + I + S I GK +R+G K +ILG NAGKSSL N L + Sbjct: 183 PPERKEAEIEAIRAVLTFCSRIIDSGKYAAFLRDGVKTLILGEPNAGKSSLMNCLLGFER 242 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIV++ PGTTRD + + ++G+ +++ DTAG+RE + +E++GI++T E ADL LL Sbjct: 243 AIVSEEPGTTRDFIRERVIVDGHCLQLMDTAGLREAESGIERQGIQKTVELSEEADLFLL 302 Query: 305 LKEINSKKEISFPKNI-------DFIFIGTKSDLYSTY--TEEYDHL----ISSFTGEGL 351 + + + + P ++ + I + KSDL + +E+ L +++ +GEGL Sbjct: 303 VLD-GTLPSPALPDSVAKRITAKNCIVVRNKSDLGERHPLSEQLCGLEQLSMAAISGEGL 361 Query: 352 EELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAENL 409 EL +I K I ++ I + RH L + L A N E + +A L Sbjct: 362 LELRERIVKMIDAHLAHDRDDLILVNARHSAALKELAECLASAIRNFEAGEPAEFVASEL 421 Query: 410 RLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 R A ++G++ G +D E +LD++FS FCIGK Sbjct: 422 RGAIEAIGRVLGRIDNEDVLDVLFSSFCIGK 452 >gi|225028844|ref|ZP_03718036.1| hypothetical protein EUBHAL_03131 [Eubacterium hallii DSM 3353] gi|224953840|gb|EEG35049.1| hypothetical protein EUBHAL_03131 [Eubacterium hallii DSM 3353] Length = 471 Score = 206 bits (525), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 165/473 (34%), Positives = 253/473 (53%), Gaps = 41/473 (8%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASL------RYFF 54 M +E +TI A++T + I IIR+SG + E + K +P+ +KA + R ++ Sbjct: 7 MINEFDTIAAIATAVSNAGIGIIRISGS---EAMEILVKIFEPYNKKADVYQLENHRIYY 63 Query: 55 G--LDGR-ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPG 111 G DG ++D+ ++++ P S+T ED E HGG+ VV +L + K R A PG Sbjct: 64 GNIKDGEEVVDECIVLIMKGPHSYTKEDVVEIDCHGGVTVVYKVLNLVLK-NGARAAEPG 122 Query: 112 EFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSF 171 EF++RAF NG+IDL +AE++ DLI S+ EM R+ SM + G LS Q +++ + +F Sbjct: 123 EFTKRAFLNGRIDLSQAEAVMDLIDSKNEMARKNSMTQLKGGLSDKIKQLREEIIYQIAF 182 Query: 172 IEADLDFSEEEDVQNFSSKEVLND---ILFLKNDISSHISQGKLGEIIRNGYKIVILGHS 228 IE+ LD E + F K + D I K + S+ + G II G + I+G Sbjct: 183 IESALDDPEHYSLDGFPEKLLEEDKKWITIAKEMLDSYDN----GRIIAEGIRTCIVGKP 238 Query: 229 NAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEG 288 NAGKSS NAL ++ AIVTDI GTTRD L + ++G + I DTAGIR+T+D VE G Sbjct: 239 NAGKSSFLNALLGEERAIVTDIAGTTRDTLEESVTIDGITLNIVDTAGIRDTEDKVESIG 298 Query: 289 IKRTFLEVENADLILLLKEIN---SKKEISFPKNI---DFIFIGTKSD------------ 330 ++R E+E+ADLIL L + + S+++I + I I + KSD Sbjct: 299 VERAKKEIESADLILFLMDTSVQISEEDIEILQRIRDKKKIILLNKSDKATEESGFEQSA 358 Query: 331 LYSTYTEEYDHL-ISSFTGEGLEELINKIKSILSNKFKKLPFSIP-SHKRHLYHLSQTVR 388 L +EE + IS+ G+G++ I ++K+++ + + + ++ RH L++T Sbjct: 359 LKEYISEETPVISISAKYGDGIDNFIMELKNMMFHGRIDVNQEVYITNARHKDALAKTYE 418 Query: 389 YLEMASLN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LE + E D +L A LG I G E L++ IFSKFC GK Sbjct: 419 SLECVERSIEAGMPEDFFTIDLMNAYEKLGLIIGESVEEDLVNEIFSKFCTGK 471 >gi|258509933|ref|YP_003172684.1| tRNA modification GTPase TrmE [Lactobacillus rhamnosus GG] gi|257149860|emb|CAR88833.1| tRNA modification GTPase MnmE [Lactobacillus rhamnosus GG] gi|259651193|dbj|BAI43355.1| tRNA modification GTPase [Lactobacillus rhamnosus GG] Length = 462 Score = 206 bits (525), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 146/457 (31%), Positives = 246/457 (53%), Gaps = 25/457 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLD---GRIL 61 +TI A+ST AISI+RLSG + + K K K+ ++ Y +D G ++ Sbjct: 9 DTIAAISTPPGEGAISIVRLSGETAVATANKVFKGKDLTQVKSHTIHYGHIVDPETGDLI 68 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121 D+ ++ V +P++FT ED E + HGGI N IL+ L R+A PGEF++RAF NG Sbjct: 69 DEVMVSVMLAPKTFTREDVVEINCHGGIVATNRILQLLLG-EGARMAEPGEFTKRAFLNG 127 Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181 +IDL EAES+ DLI ++T+ ++++ + G L L Q ++ + + +E ++D+ E Sbjct: 128 RIDLTEAESVMDLIRAKTDRAMQVAVNQLDGNLHHLIKQLRQEILEVLAQVEVNIDYPEY 187 Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 D ++K +L +K I ++ G+++R G I+G N GKSSL N + Sbjct: 188 -DTDEMTTKMLLEKAQTVKKAIEQLLTTASQGKVLREGLATAIVGRPNVGKSSLLNHMLH 246 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 +D AIVTD+ GTTRDVL +++ G +K+ DTAGI +T D VEK G++R+ + ADL Sbjct: 247 EDKAIVTDVAGTTRDVLEEYVNVRGVPLKLVDTAGIHDTTDKVEKIGVERSRQAITQADL 306 Query: 302 ILLLKE------INSKKEISFPKNIDFIFIGTKSDLYSTYTE-------EYDHLISSF-- 346 ILL+ + K+ ++ + I + K DL + + D +I + Sbjct: 307 ILLVLDQSEPLTTEDKQLLAATADKKRIIVLNKQDLPARLDTAALLQLVDADEIIKTAIP 366 Query: 347 TGEGLEELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLE--MASLNEKDCGLD 403 T +G++ L +I + + ++ S+ R + L Q + L+ MA ++ +D Sbjct: 367 TSDGMDALDERIAKLFFGGIENSQGTVMVSNARQIGLLRQASKSLDAVMAGIH-AGMPID 425 Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++ ++ A LG+ITG ++L+ +FS+FC+GK Sbjct: 426 LVQIDMTAAWDKLGEITGESAPDELITQLFSQFCLGK 462 >gi|312871302|ref|ZP_07731400.1| tRNA modification GTPase TrmE [Lactobacillus iners LEAF 3008A-a] gi|312874855|ref|ZP_07734874.1| tRNA modification GTPase TrmE [Lactobacillus iners LEAF 2053A-b] gi|311089600|gb|EFQ48025.1| tRNA modification GTPase TrmE [Lactobacillus iners LEAF 2053A-b] gi|311093316|gb|EFQ51662.1| tRNA modification GTPase TrmE [Lactobacillus iners LEAF 3008A-a] Length = 461 Score = 206 bits (525), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 151/465 (32%), Positives = 261/465 (56%), Gaps = 42/465 (9%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG-----LDGRI 60 +TI A++T ISIIR+SG + ++ I + + AS +G + + Sbjct: 9 DTIAAIATPIGEGGISIIRVSGENALEIVNKIFRGAN-LNKVASHTIHYGHIIDYANKDV 67 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+ L+ V +P++FT E++ E HGG+ V IL+ L R+A PGEF++RAF N Sbjct: 68 VDEVLVTVMLAPKTFTRENTVEVSCHGGLLVTQKILQ-LILDNGARMATPGEFTKRAFIN 126 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFIEADL 176 G+IDL +AES+ D+I ++T+ R+++M+ + G E+ L + ++ + H E ++ Sbjct: 127 GRIDLTQAESIMDIIEAKTDRARQVAMKQLEGGLLFEIRKLRQELLNTMAHE----EVNI 182 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D+ E D+ + +SKE+ + + +I ++ + G+++R+G I+G N GKSSL Sbjct: 183 DYPEY-DMDDVTSKEMYDKAQQVIKEIDKLLATAQEGKVVRSGLATAIVGRPNVGKSSLL 241 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N L+K++ AIVT+I GTTRD L + L+G L+K+ DTAGIR+TDDIVEK G++R+ + Sbjct: 242 NYLSKEEKAIVTNIAGTTRDTLEEYVSLKGILLKLIDTAGIRQTDDIVEKIGVERSKRAI 301 Query: 297 ENADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTYTEE-----YDHLI 343 +DL+LLL INS +E++ ++ I I K+D + T++ D I Sbjct: 302 TESDLVLLL--INSSEELTEEDQKLLELTQDKKRIIILNKADQVAKITKKDIQKITDSPI 359 Query: 344 SSFT------GEGLEELINK--IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL 395 + + GLEE I ++ I +K + + + + L ++ + ++ Sbjct: 360 VTISVLKKKNMIGLEEAIKSLFLQGITDSKSEVMVTN--QRQNDLLRKAKQSLIEAIEAI 417 Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 N+ + LD++ +L+ A SLG+ITG ++L+ +FSKFC+GK Sbjct: 418 ND-NMPLDLVQIDLKEAWDSLGEITGDTAPDELITQLFSKFCLGK 461 >gi|297842581|ref|XP_002889172.1| hypothetical protein ARALYDRAFT_895691 [Arabidopsis lyrata subsp. lyrata] gi|297335013|gb|EFH65431.1| hypothetical protein ARALYDRAFT_895691 [Arabidopsis lyrata subsp. lyrata] Length = 560 Score = 206 bits (525), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 157/473 (33%), Positives = 243/473 (51%), Gaps = 44/473 (9%) Query: 7 TIFAVST--GALPSAISIIRLSGPSCFQVCEFICKKKKPF-----------PRKASLRYF 53 TI A+ T G P A+ I+RLSGP +V + + K P+ + Y Sbjct: 93 TIVAIVTPIGGPPGAVGIVRLSGPKAVEVARRVFRSAKKRKKKDSDSDSWQPKSHFVEYG 152 Query: 54 FGLD--GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPG 111 +D G ++D+ L + +P S+T ED E HG + +L + RLA PG Sbjct: 153 VVVDSHGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRTCVEA-GARLAEPG 211 Query: 112 EFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSF 171 EF+ RAF NG++DL +AE++ LIS+++ ++EG+ G SSL + + + Sbjct: 212 EFTLRAFLNGRLDLSQAENVEKLISAKSSAAADAALEGIQGGFSSLVKSLRAQCIELLTE 271 Query: 172 IEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAG 231 IEA LDF E+++ + V+N I + D+ S + +++++G +I I+G N G Sbjct: 272 IEARLDF--EDEMTPLDIESVINKINSMSEDVESALDTANYDKLLQSGLQIAIVGRPNVG 329 Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR 291 KSSL NA +K + AIVT++ GTTRDV+ ++ + G + + DTAGIRET+DIVEK G++R Sbjct: 330 KSSLLNAWSKSERAIVTEVAGTTRDVVEANVTVRGVPITVLDTAGIRETNDIVEKIGVER 389 Query: 292 TFLEVENADLIL---------------LLKEINSKKEISFPKN-IDFIFIGTKSDLYSTY 335 + + AD+I+ LL++I S K + N ID + L Sbjct: 390 SETAAKVADVIIMAVSAVEGWTEEDTELLRKIQSDKPMILVMNKIDSAPPSSCDQLEDQR 449 Query: 336 -TEEYDH---LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391 EE H S+ TG+GLEEL + I IL ++P + Q VR E Sbjct: 450 KKEEVFHKSVFTSAVTGQGLEELEDAILEILG--LDRVPTGGHQWTVNQRQCEQLVRTKE 507 Query: 392 -MASLNEK---DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +A L E + +D LR A+++L +I+G E++L IF+KFCIGK Sbjct: 508 ALARLREAIEDEIPIDFWTIELREAALALAQISGQDVSEEVLSSIFAKFCIGK 560 >gi|305666624|ref|YP_003862911.1| tRNA modification GTPase [Maribacter sp. HTCC2170] gi|88708895|gb|EAR01130.1| tRNA modification GTPase [Maribacter sp. HTCC2170] Length = 470 Score = 206 bits (525), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 157/469 (33%), Positives = 244/469 (52%), Gaps = 37/469 (7%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFG--LDGRIL 61 +TI A++T A AI++IRLSG + F K ++ S G +DG +L Sbjct: 5 DTIVALATPAGSGAIAVIRLSGKDAKSIAGSYFRSIHGKDLSKQKSHTIHLGHIIDGDVL 64 Query: 62 -DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 D+ LL +F P S+TGED E HG + I++ + R+A GEF+ RAF N Sbjct: 65 MDEVLLSIFNGPNSYTGEDVIEISCHGSPYIQQQIIQLFLR-NGCRMAEAGEFTLRAFLN 123 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GK+DL +AE++ADLI+SE E +++++ M G S+ D+L + S IE +LDF+E Sbjct: 124 GKLDLSQAEAVADLIASENETTHQIAIQQMRGGFSNEIKLLRDELMNFASLIELELDFAE 183 Query: 181 EEDVQNFSSKEVLND-ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 E DV+ F+ + D IL ++N + I +G +I+ G + I+G N GKS+L NAL Sbjct: 184 E-DVE-FADRLKFQDLILRIQNVLKKLIDSFAVGNVIKKGIPVAIVGEPNVGKSTLLNAL 241 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 ++ AIV+DI GTTRD + ++ + G + DTAGIR+T DIVE GIK+TF ++E + Sbjct: 242 LNEEKAIVSDIAGTTRDAIEDEIAIGGIGFRFIDTAGIRDTKDIVENIGIKKTFEKIEQS 301 Query: 300 DLILLLKEIN--SKKEISFPK-------------NIDFIFIGTKSD------------LY 332 ++L L EIS N + I K D L Sbjct: 302 QVVLFLHSAEEFQNAEISLTSLQNEVGKISTKHPNKPLVIIVNKIDILNNKERQQLETLL 361 Query: 333 STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM 392 S LIS+ TGE +E++ N + + ++ + +I ++ RH L + + ++ Sbjct: 362 SNIEGTTYKLISAKTGESVEDVKNMLLNFVNTGALRNNETIVTNTRHYDALLKALEEIQK 421 Query: 393 ASLN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + D++A ++R A G+ITG + + LL IF+ FCIGK Sbjct: 422 VQHGMDNHLSGDLLAIDIRQALHHFGEITGEITSDDLLGNIFANFCIGK 470 >gi|259500781|ref|ZP_05743683.1| tRNA modification GTPase TrmE [Lactobacillus iners DSM 13335] gi|302190768|ref|ZP_07267022.1| tRNA modification GTPase TrmE [Lactobacillus iners AB-1] gi|309805912|ref|ZP_07699944.1| tRNA modification GTPase TrmE [Lactobacillus iners LactinV 03V1-b] gi|315654126|ref|ZP_07907042.1| tRNA modification GTPase TrmE [Lactobacillus iners ATCC 55195] gi|325913694|ref|ZP_08176056.1| tRNA modification GTPase TrmE [Lactobacillus iners UPII 60-B] gi|259167475|gb|EEW51970.1| tRNA modification GTPase TrmE [Lactobacillus iners DSM 13335] gi|308167688|gb|EFO69835.1| tRNA modification GTPase TrmE [Lactobacillus iners LactinV 03V1-b] gi|315488822|gb|EFU78468.1| tRNA modification GTPase TrmE [Lactobacillus iners ATCC 55195] gi|325477053|gb|EGC80203.1| tRNA modification GTPase TrmE [Lactobacillus iners UPII 60-B] Length = 461 Score = 206 bits (524), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 151/465 (32%), Positives = 260/465 (55%), Gaps = 42/465 (9%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG-----LDGRI 60 +TI A++T ISIIR+SG + ++ I + + AS +G + + Sbjct: 9 DTIAAIATPIGEGGISIIRVSGENALEIVNKIFRGAN-LNKVASHTIHYGHIIDYANKDV 67 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+ L+ V +P++FT E++ E HGG+ V IL+ L R+A PGEF++RAF N Sbjct: 68 VDEVLVTVMLAPKTFTRENTVEVSCHGGLLVTQKILQ-LILDNGARMATPGEFTKRAFIN 126 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFIEADL 176 G+IDL +AES+ D+I ++T+ R+++M+ + G E+ L + ++ + H E ++ Sbjct: 127 GRIDLTQAESIMDIIEAKTDRARQVAMKQLEGGLLFEIRKLRQELLNTMAHE----EVNI 182 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D+ E D+ + +SKE+ + + +I ++ + G+++R+G I+G N GKSSL Sbjct: 183 DYPEY-DMDDVTSKEMYDKAQQVIKEIDKLLATAQEGKVVRSGLATAIVGRPNVGKSSLL 241 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N L+K++ AIVT+I GTTRD L + L+G L+K+ DTAGIR+TDDIVEK G++R+ + Sbjct: 242 NYLSKEEKAIVTNIAGTTRDTLEEYVSLKGILLKLIDTAGIRQTDDIVEKIGVERSKRAI 301 Query: 297 ENADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTYTEEYDH------- 341 +DL+LLL INS +E++ ++ I I K+D + T++ Sbjct: 302 TESDLVLLL--INSSEELTEEDQKLLELTQDKKRIVILNKADQVAKITKKDIQKITDSPI 359 Query: 342 -LISSFTGE---GLEELINKI--KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL 395 IS + GLEE I + + I +K + + + + L ++ + ++ Sbjct: 360 VTISVLKKQNMIGLEEAIKSLFLQGITDSKSEVMVTN--QRQNDLLRKAKQSLIEAIEAI 417 Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 N+ + LD++ +L+ A SLG+ITG ++L+ +FSKFC+GK Sbjct: 418 ND-NMPLDLVQIDLKEAWDSLGEITGDTAPDELITQLFSKFCLGK 461 >gi|313885592|ref|ZP_07819342.1| tRNA modification GTPase TrmE [Eremococcus coleocola ACS-139-V-Col8] gi|312619322|gb|EFR30761.1| tRNA modification GTPase TrmE [Eremococcus coleocola ACS-139-V-Col8] Length = 459 Score = 206 bits (524), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 147/469 (31%), Positives = 244/469 (52%), Gaps = 42/469 (8%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLD---G 58 +E++TI A+ST AI I+R+SG + + K + + ++ Y +D Sbjct: 2 YERDTIAAISTALGEGAIGIVRMSGGDALVMANQLFKGVNLLTQPSHTIHYGHIVDPESK 61 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 +I+D+ ++ + +P+++T ED E + HGGI V IL+ +M RLA PGEF++RAF Sbjct: 62 QIIDEVMVTLLRAPKTYTREDVVEINCHGGIMAVQAILDLCLQM-GARLAEPGEFTKRAF 120 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG+IDL +AE++ DLI ++T + SM + G LS + + + IE +D+ Sbjct: 121 LNGRIDLSQAEAVMDLIEAKTNKAMQASMNQLQGSLSKKIRSLRQTMLNTLAQIEVTIDY 180 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E +DV+ S +++ + ++ + Q + G + R G VI+G N GKSSL N Sbjct: 181 PEYDDVEEMSLQQLKTTAQAISQEVQHILKQAQSGRLFREGINTVIVGRPNVGKSSLLNR 240 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L D AIVTDI GTTRD + +++ G +K+ DTAGIR+T+++VEK G++R+ +E Sbjct: 241 LTGWDKAIVTDIEGTTRDTIEEMVNVRGVPLKLIDTAGIRQTEEVVEKIGVERSRKALEE 300 Query: 299 ADLIL---------------LLKEINSKKEI------SFPKNIDFIFI----GTKSDLYS 333 ADL++ LLK KK I P +D + GT + + + Sbjct: 301 ADLVILILNQAEDLQEVDLELLKASQGKKRIILLNKQDLPSQLDRNALAESSGTATIIET 360 Query: 334 TYTEEYDHLISSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYL-E 391 + EE GL+ L ++I ++ + + + + RH L Q + L E Sbjct: 361 SMLEEA----------GLDALEDEISNLFFKGQLQSTDINYLLNSRHTQLLKQALAALDE 410 Query: 392 MASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + S + +D+I + A LG+ITG ++LL+ +FS+FC+GK Sbjct: 411 VQSAVAMELPVDLIQIDYTRAWDLLGEITGDSVQDELLNELFSQFCLGK 459 >gi|62185497|ref|YP_220282.1| tRNA modification GTPase TrmE [Chlamydophila abortus S26/3] gi|81312355|sp|Q5L4W0|MNME_CHLAB RecName: Full=tRNA modification GTPase mnmE gi|62148564|emb|CAH64336.1| probable tRNA modification GTPase TrmE [Chlamydophila abortus S26/3] Length = 443 Score = 206 bits (524), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 153/449 (34%), Positives = 232/449 (51%), Gaps = 20/449 (4%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP-FPRKASLRYFFGLDGRILD 62 + +TI A++T +I+I+R+SGP Q+ + I P F + +G+ +D Sbjct: 3 KNDTIAAIATPPGEGSIAIVRISGPEAIQITDKIFSGSVPSFSSHTAHLGTVSYNGQQID 62 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 + LL++ +P SFTGED E HGG + IL L R A PGEFS+RAF NGK Sbjct: 63 QTLLLIMRAPRSFTGEDVVELQCHGGYFSCSQILAALIAE-GARPALPGEFSQRAFLNGK 121 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 IDL++AE++ ++I+++ ++ G S Q + +FIE DF EEE Sbjct: 122 IDLIQAEAIQNIIAADNLDAFHIAQNHFQGHFSKKVQQISSLIIESLAFIEVLADFPEEE 181 Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 L++ + + +D+ + QG+ + G IV+ GH NAGKSSL NAL K Sbjct: 182 QPDMQEPMNRLHEAILIIDDLIASFDQGQR---LAQGTSIVLAGHPNAGKSSLLNALTNK 238 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 + AIVTDIPGTTRD+L + L+G +++ D+AG RET + +E+EGI+R +E ++ I Sbjct: 239 NRAIVTDIPGTTRDILEENWMLQGKRIRLIDSAGQRETHNPIEQEGIERAIAAMEASEAI 298 Query: 303 LLLKEINSKKEISFPKNI---DFIFIGTKSDLYSTY---TEEYDHLISSFTGEGLEELIN 356 L + + S+ P+ + + + KSDL + T +S+ TG G+ EL Sbjct: 299 LWVMDA-SQPPPPLPEILMRKPSLLLWNKSDLATPPHLETTLPQLAVSAKTGAGMIELKQ 357 Query: 357 KIKSILS----NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAENLRL 411 I+ + K K+ F I S RH L YL A + + IA LR Sbjct: 358 FIQQWMQKQQLGKNGKV-FLISS--RHHTILQHMRTYLLSAQEGLQSQSPPEFIALELRQ 414 Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A + G ++G E +L IFS+FCIGK Sbjct: 415 ALQTTGNLSGSEINETILGEIFSRFCIGK 443 >gi|329955507|ref|ZP_08296415.1| tRNA modification GTPase TrmE [Bacteroides clarus YIT 12056] gi|328525910|gb|EGF52934.1| tRNA modification GTPase TrmE [Bacteroides clarus YIT 12056] Length = 461 Score = 206 bits (524), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 146/463 (31%), Positives = 245/463 (52%), Gaps = 31/463 (6%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFI-----CKKKKPFPRKASLRYFFGLDG- 58 ++TI A++T A AI IR+SGP ++ I KK + +L + DG Sbjct: 3 QDTICAIAT-AQGGAIGCIRVSGPEAIEITSRIFIPAATNKKLENGKPYTLTFGRIYDGP 61 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 I+D+ L+ +F +P S+TGE+S E HG ++ +L+ L K R+A PGE+++RAF Sbjct: 62 EIIDEVLVSLFRAPHSYTGENSTEITCHGSAYILQKVLQLLIK-SGCRMATPGEYTQRAF 120 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NGK+DL +AE++ADLI+S + RL+M M G S D+L H S IE +LDF Sbjct: 121 LNGKMDLSQAEAVADLIASSSAATHRLAMSQMRGGFSKELTALRDQLLHFTSLIELELDF 180 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 S+ E+++ E+ ++ I+ ++ +G I+NG + I+G +NAGKS+L N Sbjct: 181 SDHEELELADRSELCQLANNIEKVIARLVNSFSVGNAIKNGVPVAIVGETNAGKSTLLNV 240 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L ++ AIV+DI GTTRD++ +++ G + DTAGIRET+D +E GI+RTF +++ Sbjct: 241 LLNEEKAIVSDIHGTTRDIIEDTVNIGGITFRFIDTAGIRETNDTIESIGIERTFQKLDQ 300 Query: 299 ADLIL-LLKEINSKKEIS------FPK--NIDFIFIGTKSDLYSTYTEEYDH-------- 341 A+++L ++ +++ +I+ P+ I + K+DL + Sbjct: 301 AEIVLWIIDATDAQTQITQLAGQLLPRCERKQLILVYNKADLVDNIQNSIPNDFPDNVKS 360 Query: 342 -LISSFTGEGLEELINKIKSILSNKFKKLPFS--IPSHKRHLYHLSQTVRYLEMASLN-E 397 ++S+ E +EEL + I S + + I ++ RH L+ + + Sbjct: 361 IILSAKNREHIEELQQML--ITSAHLPTVTQNDVIVTNVRHYEALNNALESIHRVQKGLA 418 Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + D +++++R L I G V + +L IF FCIGK Sbjct: 419 NNISGDFVSQDIRECIFHLSDIAGEVTNDMILQNIFQHFCIGK 461 >gi|260437683|ref|ZP_05791499.1| tRNA modification GTPase TrmE [Butyrivibrio crossotus DSM 2876] gi|292809909|gb|EFF69114.1| tRNA modification GTPase TrmE [Butyrivibrio crossotus DSM 2876] Length = 456 Score = 206 bits (524), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 164/470 (34%), Positives = 249/470 (52%), Gaps = 49/470 (10%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKK-KKPFPRKASLRYFFG---LDG 58 +ETI A++TG + S I IIR+SG F V + F+ KK KK S +G + Sbjct: 2 RETIAAIATG-MGSGIGIIRISGEEAFSVIDKIFVPKKSKKKMSEVKSHTIHYGNIVFNN 60 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 I+D+ L++V +P ++T ED+ E + HGG V+ +LE + K R A PGEF++RAF Sbjct: 61 EIVDEVLVMVMAAPNTYTKEDTIEINCHGGSFVMKKVLEAVLK-SGARPAEPGEFTKRAF 119 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG+IDL +AE++ D+I+S+ + + S+ ++G+LS G ++ H +FIEA LD Sbjct: 120 LNGRIDLSQAEAVIDIINSKNKYALKNSINLLNGKLSEQIGNLRAEIIHNVAFIEAALDD 179 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQG-KL------GEIIRNGYKIVILGHSNAG 231 E + NF K L+N + + KL G++ G VILG NAG Sbjct: 180 PEHISLDNFGDK--------LENYVDKWVKTAEKLLITVDNGKLFTQGINTVILGKPNAG 231 Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR 291 KSS+ N L+ ++ AIVTDI GTTRD++ ++L G + + DTAGIR T+DIVE G+ + Sbjct: 232 KSSILNILSGRERAIVTDIEGTTRDIIEEQINLNGITLNLIDTAGIRNTEDIVENIGVNK 291 Query: 292 TFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDL--------YSTYTE 337 E+ADLI+ + + + K + + KN + + KSDL T Sbjct: 292 AKATAEDADLIMYVVDSSRKLDENDYEILKLIKNNKAVVLLNKSDLEPVITVDKMKELTN 351 Query: 338 EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS---IPSHKRHLYHLSQTVRYLEMA- 393 L+S+ GLEEL + I + + K+ F+ S++R L + L + Sbjct: 352 NRVFLVSAKENTGLEELTDYIVDMFTE--GKIDFNDEVYISNERDKAALDNALESLRLVK 409 Query: 394 -SLNEKDCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 S+NE G+ D +L A LGKI G + L++ IFSKFC+GK Sbjct: 410 RSINE---GMPEDFYTIDLLNAYEELGKIIGESVEDDLVNEIFSKFCMGK 456 >gi|160889085|ref|ZP_02070088.1| hypothetical protein BACUNI_01506 [Bacteroides uniformis ATCC 8492] gi|317479360|ref|ZP_07938494.1| tRNA modification GTPase TrmE [Bacteroides sp. 4_1_36] gi|156861552|gb|EDO54983.1| hypothetical protein BACUNI_01506 [Bacteroides uniformis ATCC 8492] gi|316904434|gb|EFV26254.1| tRNA modification GTPase TrmE [Bacteroides sp. 4_1_36] Length = 464 Score = 206 bits (523), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 156/467 (33%), Positives = 245/467 (52%), Gaps = 36/467 (7%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFI---CKKKKPFPRKASLRYFFGL---DG 58 ++TI A++T A AI IR+SGP ++ I +K K FG + Sbjct: 3 QDTICAIAT-AQGGAIGCIRVSGPDAIEITSRIFTPARKGKKLKDAKPYTLTFGHIHEEE 61 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 I+D+ L+ +F +P S+TGEDS E HG ++ +L+ L RLA PGE+++RAF Sbjct: 62 NIIDEVLVSLFRAPHSYTGEDSTEIMCHGSSYILQKVLQLLIG-NGCRLAAPGEYTQRAF 120 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 GK+DL +AE++ADLI+S + RL+M M G S D+L H S IE +LDF Sbjct: 121 LGGKMDLSQAEAVADLIASTSAATHRLAMSQMRGGFSKELASLRDQLLHFTSLIELELDF 180 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 S+ E+++ E+ ++ IS + +G I+NG + I+G +NAGKS+L NA Sbjct: 181 SDHEELEFADRSELCLLADGIEQVISRLVQSFSVGNAIKNGVPVAIIGETNAGKSTLLNA 240 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L ++ AIV+DI GTTRDV+ ++L G + DTAGIRET+D +E GI+RTF ++E Sbjct: 241 LLNEERAIVSDIHGTTRDVIEDTVNLGGITFRFIDTAGIRETNDTIENLGIERTFQKLEQ 300 Query: 299 ADLIL-LLKEINSKKEIS------FPK--NIDFIFIGTKSDLY--------STYTEEYDH 341 A+++L ++ N+ I P+ I + K+DL S++T + Sbjct: 301 AEIVLWIVDATNAVSRIPQLTTQILPRCEGKRLILVFNKTDLVQDASTIPNSSFTVAATN 360 Query: 342 LIS-SFTGEGLEELINKIKSILSNKFKKLPF-----SIPSHKRHLYHLSQTVRYLE--MA 393 + S + +G L +K++ +L + LP I ++ RH L+ + + Sbjct: 361 VQCISISAKGRTNL-DKLQQMLISA-ANLPTVTQNDVIVTNIRHYEALTHALEAIHRVQQ 418 Query: 394 SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L E G D +++++R L I G V + +L IF FCIGK Sbjct: 419 GLAENLSG-DFVSQDIRECIFHLSDIAGEVTNDMVLGNIFEHFCIGK 464 >gi|42527683|ref|NP_972781.1| tRNA modification GTPase TrmE [Treponema denticola ATCC 35405] gi|81831356|sp|Q73KN7|MNME_TREDE RecName: Full=tRNA modification GTPase mnmE gi|41818511|gb|AAS12700.1| tRNA modification GTPase TrmE [Treponema denticola ATCC 35405] Length = 472 Score = 206 bits (523), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 167/468 (35%), Positives = 247/468 (52%), Gaps = 38/468 (8%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF--PRKASLRYFFGLD---GRI 60 + I A++T P+A+ I+R SG + I K K + S+ + + LD + Sbjct: 10 DPIAAIATALSPAALGIVRTSGEGAIDLASAIFSKPKKLKEAQGNSILHGWVLDPESKKE 69 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+ + V+ P+SFTGEDS EF HGG AVV I L + R A GEF+ RAF N Sbjct: 70 VDEVTVCVYREPKSFTGEDSVEFICHGGTAVVLKIYRLLIEN-GFRAAEGGEFTFRAFAN 128 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GK DL AE++ ++I+S+T++ L+ +SG L S + +LT + + + ++++ E Sbjct: 129 GKADLTRAEAVNEIINSKTDINIELAAGRLSGNLFSGIEEIKHELTAVIAAADVEIEYPE 188 Query: 181 EEDVQN--FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 +E+ FS +L I LK+ S ++ +I G K+V+ G +NAGKSSLFNA Sbjct: 189 DEETSQGAFSPDLILRIIEPLKDLADSWAAE----KIFIQGAKVVLAGKTNAGKSSLFNA 244 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L K+D AIV+DI GTTRD L L+ G V + DTAGIR T D +E G++R+ N Sbjct: 245 LLKEDRAIVSDIHGTTRDWLEASLNFNGIPVSLYDTAGIRYTQDSIEAIGVERSLEMSRN 304 Query: 299 ADLILLL---KEINS-----KKEISFPKNID--FIFIGTKSDLYSTYTEEYDH------- 341 ADLIL L K+I S K + F KN I + TK DL T ++E Sbjct: 305 ADLILYLCDPKDILSAGSLNKDDSEFIKNAKAPVITVITKEDLLDTESKEKIKEILKAEK 364 Query: 342 -----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPS---HKRHLYHLSQTVRYLEMA 393 +ISS G++ L K S+L+ FS + +R + + + L+ A Sbjct: 365 IAEPIIISSKASNGIKALSEKAYSVLAKNTGSSGFSKTASLGSERQRDAVQKALDVLQTA 424 Query: 394 SLNE-KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 N + LD+I E+L A LG+ITG V + +LD +FS FC+GK Sbjct: 425 YQNSLEGFPLDLIVEDLEEALSFLGEITGEVRSDDILDKVFSGFCVGK 472 >gi|323445332|gb|EGB01994.1| hypothetical protein AURANDRAFT_9780 [Aureococcus anophagefferens] Length = 299 Score = 206 bits (523), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 124/299 (41%), Positives = 180/299 (60%), Gaps = 14/299 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP--RKASLRYFFGLDGRILDK 63 +TI+A+S+G + ++++R+SGPS + K P P R ASLR +LD+ Sbjct: 3 DTIYALSSGRGVAGVAVVRVSGPSASDALAALTPGK-PLPAHRVASLRTLRDASD-VLDE 60 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 L++ F +P SFTGED E H HGG A V+G+LE L +P LR A+ GEF+RRAF GK+ Sbjct: 61 ALVLRFEAPRSFTGEDVVELHCHGGEATVDGVLEALDNIPKLRAADRGEFTRRAFAAGKL 120 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE--E 181 L E E LADL++++T QRR ++ M G + Y +W +L +R+ E +DF + E Sbjct: 121 GLTEVEGLADLLAAKTAPQRRQALAQMGGSMERTYARWRGELASLRASAEVLVDFGDDVE 180 Query: 182 EDVQNFSS--KEVLN-DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 DV + S + L+ + LK ++ + ++ GE R+G ++V+ G NAGKSSL NA Sbjct: 181 GDVADQSDDIRAALDASVRSLKTELDAALTDAPRGEATRDGVRVVLAGAPNAGKSSLLNA 240 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---ETD--DIVEKEGIKRT 292 +A +D AIV+ GTTRDVL I L L G ++ DTAG+R E D D VE EG++R Sbjct: 241 VAARDAAIVSQAAGTTRDVLEIGLSLGGLPARLFDTAGLRVDGEEDSLDAVEVEGMRRA 299 >gi|119356003|ref|YP_910647.1| tRNA modification GTPase TrmE [Chlorobium phaeobacteroides DSM 266] gi|205829132|sp|A1BCU6|MNME_CHLPD RecName: Full=tRNA modification GTPase mnmE gi|119353352|gb|ABL64223.1| tRNA modification GTPase trmE [Chlorobium phaeobacteroides DSM 266] Length = 475 Score = 206 bits (523), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 155/465 (33%), Positives = 251/465 (53%), Gaps = 37/465 (7%) Query: 8 IFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK----PFPRKASLRYFFG--LDG-RI 60 I A++T A++++R+SG + F + + +K + P FG DG + Sbjct: 16 IAAIATPLGVGALAVVRISGATAFDIAGRVFRKARDPHQPLSETPGYTAHFGRLYDGLTL 75 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+ + +VF SP SFT ED EF HGG V +L+ L RLA PGEF+RRAF N Sbjct: 76 IDEVIALVFRSPSSFTAEDMVEFTCHGGPVVTRHVLQLLLD-NGCRLAEPGEFTRRAFLN 134 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GKIDLL+AE++ ++I + +E R ++ M G+LS+ G +KL + +E +LDFSE Sbjct: 135 GKIDLLQAEAIGEMIHARSESAYRTAVIQMKGDLSATLGALREKLLRSCALLELELDFSE 194 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E DV+ S +E+ +I L+++++ + + G ++ G VI G NAGKS+L N L Sbjct: 195 E-DVEFQSREELRVEIASLQSEVARLVDSYQHGRLLTEGVATVIAGRPNAGKSTLLNTLL 253 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIV+ +PGTTRD + + + +++DTAG+RET + +E EG++R+ +++ AD Sbjct: 254 GEERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLRETGEEIEHEGVRRSRMKMAEAD 313 Query: 301 LILL------------LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------ 342 L+L +KEI + K + + F+ + K DL T L Sbjct: 314 LLLYLLDLSREGMAEEIKEIVALK--AAHASSKFLVVANKIDLVPDATTLLCRLGEEAGC 371 Query: 343 ----ISSFTGEGLEELINKIKSILS--NKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SL 395 IS+ G++EL +++ S++ +K + + S RH L L A +L Sbjct: 372 EAIGISARQKLGIDELKSRMSSMVEGLDKLHEASVLVTS-LRHYEALRNAGDALRNAQNL 430 Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++ ++IA LR A +G+ITG V E++L IF +FCIGK Sbjct: 431 LDEQADTELIAFELRAALDYVGEITGKVVNEEILHAIFERFCIGK 475 >gi|164657303|ref|XP_001729778.1| hypothetical protein MGL_3322 [Malassezia globosa CBS 7966] gi|159103671|gb|EDP42564.1| hypothetical protein MGL_3322 [Malassezia globosa CBS 7966] Length = 444 Score = 206 bits (523), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 137/432 (31%), Positives = 215/432 (49%), Gaps = 51/432 (11%) Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP------NLRLANPGEF 113 +LD L + FP SFTG+ + E H+HG AVV +LE L M ++R A PGEF Sbjct: 13 LLDDALAVYFPHGRSFTGQATLELHLHGSPAVVRDVLEALDAMRTVLSTRDMRPALPGEF 72 Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173 +RRAFE+G++DL E+L L+ +ET QRRL+ G + LY + +L S +E Sbjct: 73 TRRAFEHGRLDLTACEALDSLLHAETSQQRRLAQWAAQGYQAQLYDRLYAQLVQAMSQME 132 Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHI------SQGKLGEIIRNGYKIVILGH 227 A LDFS+E+DV V I ++ ++S + ++ + + G +I + G Sbjct: 133 AMLDFSDEDDVNEHLWISVHETIHGMRQYLASELQLNTPPTRRSYADAVMQGVRIALYGR 192 Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKE 287 NAGKSSL N L ++D AIVT GTTRDVL + ++L GY V ++DTAG+R + D VE+ Sbjct: 193 PNAGKSSLLNRLVRRDAAIVTPYAGTTRDVLEVCMELAGYRVTLADTAGVRASQDAVEQI 252 Query: 288 GIKRTFLEVENADLILLL---------------------------KEINSKKEISFPKNI 320 G++RT V AD+ +L+ ++ +K + + Sbjct: 253 GVERTQAYVAEADMCVLVCTPQDFQHDLPPAGPCRIPAATLERLGVQMQAKPVLILINKM 312 Query: 321 DFIF-IGTKSDLYSTYTEEYDH--------LISSFTGEGLEELINKIKSILSNKFKKLPF 371 D + IG DH S G++ L+N++ S ++ + Sbjct: 313 DECWDIGGDHTSSPLSKGRCDHEGVECHVWHASVLHDVGMDLLMNELGSHVARMYDTNQV 372 Query: 372 SIP--SHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITG-CVDVEQL 428 ++P + RH + L V L+ + L ++AE LR A+ L ++TG + + + Sbjct: 373 TMPLVTQARHRHILMDVVACLDTVLATRESPDLVVVAEELRHAAHLLAQVTGRTITSDTV 432 Query: 429 LDIIFSKFCIGK 440 L IF++FCIGK Sbjct: 433 LGEIFARFCIGK 444 >gi|160941470|ref|ZP_02088805.1| hypothetical protein CLOBOL_06361 [Clostridium bolteae ATCC BAA-613] gi|158435616|gb|EDP13383.1| hypothetical protein CLOBOL_06361 [Clostridium bolteae ATCC BAA-613] Length = 459 Score = 205 bits (522), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 151/460 (32%), Positives = 249/460 (54%), Gaps = 29/460 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK------PFPRKASLRYFFGLDG- 58 +TI A++TG S I I+R+SG F V + I + +K + ++ Y + DG Sbjct: 4 DTIAAIATGMSNSGIGIVRISGEQAFSVIDSIFRNRKGERVRLSLSQSHTVHYGYIYDGD 63 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 +D+ L+I+ P S+T ED+ E HGG+ +V ILE + R A PGEF++RAF Sbjct: 64 EKVDEALVIIMKGPHSYTAEDTVEIDCHGGVLMVRRILETVLH-AGARTAEPGEFTKRAF 122 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG++DL +AE++AD+I + E + S+ +SG +S+ + ++ + +FIE+ LD Sbjct: 123 LNGRLDLSQAEAVADVIHATNEYALKSSVSQLSGSVSAKIKELRSRILYQIAFIESALDD 182 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E + + S+ +++D++ + ++ + G ++ G K VILG NAGKSSL N Sbjct: 183 PEHISLDGYGSR-LMDDLVPMIGEVRKLLLSADDGRVMSEGVKTVILGKPNAGKSSLMNV 241 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L ++ AIVT+I GTTRD L + L+G + + DTAGIR+T+D+VEK G+ R + Sbjct: 242 LLGEERAIVTEIAGTTRDTLEEHIYLQGISLNVVDTAGIRDTEDVVEKIGVDRAMKAARD 301 Query: 299 ADLILLLKEIN-----SKKE-ISFPKNIDFIFIGTKSDL-YSTYTEEYDHL-------IS 344 ADLI+ + + + S +E I F ++ I + KSDL T E + + +S Sbjct: 302 ADLIIYVVDGSRPLDESDREIIEFIRDRKTIVLLNKSDLDLEVGTAELEQICGHKVLPVS 361 Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFS---IPSHKRHLYHLSQTVRYLEMASLNEKDC- 400 + +G+E L +IK + + L F+ ++ RH L Q + L M + +D Sbjct: 362 AKEEQGIELLEQEIKKLFYH--GDLSFNDQVYITNARHKEALEQCLESLLMVKGSVEDSM 419 Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D + +L A LG I G + +++ IF+KFC+GK Sbjct: 420 PEDFYSIDLMNAYEQLGFIIGEAVDDDVVNEIFAKFCMGK 459 >gi|298372710|ref|ZP_06982700.1| tRNA modification GTPase TrmE [Bacteroidetes oral taxon 274 str. F0058] gi|298275614|gb|EFI17165.1| tRNA modification GTPase TrmE [Bacteroidetes oral taxon 274 str. F0058] Length = 464 Score = 205 bits (522), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 150/468 (32%), Positives = 247/468 (52%), Gaps = 45/468 (9%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLR----------YFFGL 56 TI AVST + I+++R+SG F + + I P RKASLR Sbjct: 8 TICAVSTASGVGGIAVLRISGKEAFDIVDKIFV---PVGRKASLREQNPYTVSYGKIVDA 64 Query: 57 DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 D I+D L+ VF P SFTGE+ E HG I + IL L LA PGEF++R Sbjct: 65 DNSIVDNVLVSVFKEPHSFTGENVVEIACHGSIYIQQAILRLLVD-NGCVLATPGEFTKR 123 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF GK+DL +AE++ADLI+S ++ ++++ M G S+ ++L + S IE +L Sbjct: 124 AFVGGKMDLSQAEAVADLIASTSKASHQMAIRQMRGGFSAELALLREQLLNFVSLIELEL 183 Query: 177 DFSEEEDVQNFSSKEVLNDIL-FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 DFSEE DV+ F+ +E L + ++ I+ ++ K+G +I+NG + ++G +N GKS+L Sbjct: 184 DFSEE-DVE-FADREELKSLADSIERRIAELVASFKIGNVIKNGVPVALVGKTNVGKSTL 241 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N+L ++ AIV+D+ GTTRD + + ++G + DTAGIR T D VE GI+RT+ + Sbjct: 242 LNSLLNEERAIVSDVHGTTRDSIEDSIVIDGVTFRFIDTAGIRTTTDEVENLGIERTYRK 301 Query: 296 VENADLILL---------LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF 346 ++ A+++L +KE + ++ K I I + L +EY ++ S Sbjct: 302 IDEAEIVLWIVDATQTSDIKEDIEQNSLNLSKTILVI-----NKLDKISDDEYQKILHSV 356 Query: 347 TGEGLEEL---------INKIKSILSNKFK----KLPFSIPSHKRHLYHLSQTVRYLEMA 393 +E + I+++ +L +K + I ++ RH L++ + Sbjct: 357 ENLNVEYIFISAKQRMNIDRLHKMLIDKMNLNKIDIDAVIVNNVRHYEALTRASEAIMRV 416 Query: 394 SLN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + E D+++ ++R LG+ITG + +++L+ IF KFCIGK Sbjct: 417 TEGLESGISGDLLSLDIRDCMHYLGEITGQISTDEILNNIFGKFCIGK 464 >gi|294055629|ref|YP_003549287.1| tRNA modification GTPase TrmE [Coraliomargarita akajimensis DSM 45221] gi|293614962|gb|ADE55117.1| tRNA modification GTPase TrmE [Coraliomargarita akajimensis DSM 45221] Length = 453 Score = 205 bits (522), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 146/457 (31%), Positives = 234/457 (51%), Gaps = 30/457 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF-PRKASLRYFFGLDGRILDKG 64 +TI A+ST A SAI++IRLSGP C + + + PR A + + G ++D Sbjct: 5 DTIVALSTPAGESAIAVIRLSGPLCPSIAMQVMGRSTALKPRYAHYGSYTSVGGDLIDDC 64 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 + +F S +SFTGE E HG +V I+E+L K A PGEF+R AF NGKID Sbjct: 65 VFTLFESGKSFTGEAMLEIAPHGNPMIVQRIVEDLLKR-GCCAAEPGEFTRTAFLNGKID 123 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE+++DLI + +E ++ + G + + +++ + + +EA +DF EE D+ Sbjct: 124 LSQAEAVSDLIRARSERSIEVAQRQLHGSVGRKMSELTERVLAVMAHLEAYIDFPEE-DL 182 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 D+ L ++ + ++ G K +I+G N GKSSL NAL + Sbjct: 183 PPEDQAGPSQDLRQLIQEVRELVETQHYNALLHEGIKTLIVGEPNVGKSSLINALTGTER 242 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL- 303 AIV+D+PGTTRD ++ L L + ++I DTAG+ E D +E+ GI+ T + E AD L Sbjct: 243 AIVSDVPGTTRDFISSFLMLGPWRIEILDTAGLHEAGDAIEQIGIQHTIEQAETADFFLV 302 Query: 304 --------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL-ISSFTG 348 LL+ ++SK + D + ++ + E H +S T Sbjct: 303 VVDATQPSPTLPVELLERLSSKNALVLVNKTDL----ASPEPHAEFLPELPHCPLSLLTN 358 Query: 349 EGLE----ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL-D 403 G+E + + I + L+ + + RH L++ E+A+ KD L + Sbjct: 359 VGMERFRADWLKAIDAGLTGPIATDGLVV--NARHAAALTEAADAFELAAQKLKDDELAE 416 Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++A +LR A S+GK+ G VD E++LD +F +FCIGK Sbjct: 417 LVAADLRDAVDSIGKVVGKVDNERMLDSLFKQFCIGK 453 >gi|108760478|ref|YP_635609.1| tRNA modification GTPase TrmE [Myxococcus xanthus DK 1622] gi|123073862|sp|Q1CVG4|MNME_MYXXD RecName: Full=tRNA modification GTPase mnmE gi|108464358|gb|ABF89543.1| tRNA modification GTPase TrmE [Myxococcus xanthus DK 1622] Length = 442 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 140/428 (32%), Positives = 229/428 (53%), Gaps = 12/428 (2%) Query: 20 ISIIRLSGPSCFQVCEFICK--KKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77 + I+RLSGP V + +P PR A L F +GR LD+GL + F P+SFTG Sbjct: 20 VGILRLSGPEALDVGRLLAPGVPAQPTPRHAYLASFVDAEGRSLDEGLFLYFRGPQSFTG 79 Query: 78 EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137 ED E HG ++ +L + +R A PGEF+RRAF NG++DL AE++ADL+++ Sbjct: 80 EDVVELQAHGSPRLLRLLLTRALEDARVRHAAPGEFTRRAFLNGRLDLTRAEAVADLVAA 139 Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197 ++E R + G+SG L+S + L + + +E L F +E + + ++V + Sbjct: 140 DSEAAVRAAAAGLSGALASRVQALEEPLRALHADMEGVLSFPDEAE---GADEDVGERVT 196 Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257 L+ + +++ G ++R G ++ + G NAGKS+LFN L + A+V D PGTTRD Sbjct: 197 ALRAQAETLLAEVGRGRLVRRGARVALFGPVNAGKSTLFNRLVGEARALVDDEPGTTRDA 256 Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL-ILLLKEINSKKEI-S 315 L ++ +G V + DTAG+RET VE GI RT + DL +L+L ++ E+ + Sbjct: 257 LEARVEWDGLAVTLFDTAGLRETPGRVEALGIARTRALLTGVDLAVLVLPPGVTQAEVEA 316 Query: 316 FPKNID---FIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372 + +++ + + K D+ + +S TGEG++ L + + L + Sbjct: 317 WTRDVGGTPVLVVDGKCDVAEVSSSPRQR-VSGLTGEGVDALRDDMLGRLWGGGTPSAVA 375 Query: 373 IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDII 432 + S +RH L + L A + L++++ + LA +LG+++G V E LLD I Sbjct: 376 LVS-ERHADALRRASEALGRAESASRVSTLEVVSGEVGLALEALGEVSGTVVSEALLDAI 434 Query: 433 FSKFCIGK 440 F +FCIGK Sbjct: 435 FQRFCIGK 442 >gi|307243432|ref|ZP_07525588.1| tRNA modification GTPase TrmE [Peptostreptococcus stomatis DSM 17678] gi|306493156|gb|EFM65153.1| tRNA modification GTPase TrmE [Peptostreptococcus stomatis DSM 17678] Length = 459 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 161/461 (34%), Positives = 256/461 (55%), Gaps = 32/461 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRY-----FFG--LDG 58 +TI A++T I IIR+SGP ++ I PF + + L Y +G LDG Sbjct: 5 DTIAAIATAPGQGGIGIIRISGPDSLKIANKIFS---PFHKGSILDYPIRTLIYGNILDG 61 Query: 59 -RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 I+D+ LL P S+T ED E + HGG V ILE + K R+A GEF++RA Sbjct: 62 DTIIDEVLLAYMKGPNSYTAEDVIEINCHGGFISVRKILELVLK-SGARMAQEGEFTKRA 120 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NG+IDL +AE++ D+I+++TE ++ + G LS D++T I + +E +D Sbjct: 121 FLNGRIDLSQAEAVIDIINAKTEESHNVAQSQLEGTLSKKIRSLRDQITGILAQLEVAID 180 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 + EE D++ + KE+++ + + N + G+I+R G K ILG N GKSSL N Sbjct: 181 YPEE-DIEFITYKELVDQTIDVNNQVKKLYQTADTGKILREGLKTAILGKPNVGKSSLMN 239 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 + +D AIVTDIPGTTRDV+ ++++G +KI DTAGIR TDD+VEK G++++ ++ Sbjct: 240 LILGEDRAIVTDIPGTTRDVIEEFVNIKGIPLKIVDTAGIRATDDLVEKIGVEKSREHMK 299 Query: 298 NADLILLLKEIN---SKKEISFPKNID---FIFIGTKSDL--------YSTYTEEYDHL- 342 ADL L++ + + +++I +NID + I K+DL +Y + + + Sbjct: 300 LADLALVVLDSSRPLDQEDIQILENIDQAKSLVILNKTDLACQMDIESLKSYVDTKNIIN 359 Query: 343 ISSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNEKD 399 IS+ G+G++ + ++++ + K + ++ RH + + + + A SLN++ Sbjct: 360 ISALKGQGIDLIHDRMEDLVFEGKISDSSDLMITNSRHRDAIYKAMVSIGDAINSLNDR- 418 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D I +L+ A SLG I G E LLD IFS FCIGK Sbjct: 419 LPYDFIEVDLKDAWDSLGCINGDTIEEDLLDTIFSNFCIGK 459 >gi|298384325|ref|ZP_06993885.1| tRNA modification GTPase TrmE [Bacteroides sp. 1_1_14] gi|298262604|gb|EFI05468.1| tRNA modification GTPase TrmE [Bacteroides sp. 1_1_14] Length = 465 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 157/469 (33%), Positives = 247/469 (52%), Gaps = 39/469 (8%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFI---CKKKKPFPRKASLRYFFG--LDGR 59 ++TI A++T A AI IR+SGP + I K K + FG +G Sbjct: 3 QDTICAIAT-AQGGAIGSIRVSGPEAISITSRIFQPAKAGKLLSEQKPYTLTFGRIYNGE 61 Query: 60 -ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 I+D+ L+ +F +P S+TGEDS E HG ++ +++ L K R+A PGE+++RAF Sbjct: 62 EIIDEVLVSLFRAPHSYTGEDSTEITCHGSSYILQQVMQLLIK-NGCRMAQPGEYTQRAF 120 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NGK+DL +AE++ADLI+S + RL+M M G S +KL + S IE +LDF Sbjct: 121 LNGKMDLSQAEAVADLIASSSAATHRLAMSQMRGGFSKELTDLRNKLLNFTSMIELELDF 180 Query: 179 SEEEDVQNFSSKEVLNDIL-FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 SEE DV+ F+ + L + ++ IS + +G I+NG + I+G +NAGKS+L N Sbjct: 181 SEE-DVE-FADRSALRKLADEIEQVISRLVHSFNVGNAIKNGVPVAIIGETNAGKSTLLN 238 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 L +D AIV+DI GTTRDV+ +++ G + DTAGIRET+D +E GI+RTF +++ Sbjct: 239 VLLNEDKAIVSDIHGTTRDVIEDTINISGITFRFIDTAGIRETNDTIESLGIERTFQKLD 298 Query: 298 NADLILLL-------KEINSKKEISFPK--NIDFIFIGTKSDLY-STYTEEYDHLISSFT 347 A+++L + +I E P+ I + K+DL EE L+ +F Sbjct: 299 QAEIVLWMVDSSDASSQIKQLSEKIIPRCEEKQLIVVFNKADLIEEKQKEELSALLKNFP 358 Query: 348 GEGLEELI---------NKIKSILSNKFKKLPFS-----IPSHKRHLYHLSQTVRYLEMA 393 E + + ++++ +L N LP I ++ RH LS+ + + Sbjct: 359 KEYTKSIFISAKERKQTDELQKMLINA-AHLPTVTQNDIIVTNVRHYEALSKALDAIHRV 417 Query: 394 S--LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L+ G D +++++R + I G V + +L IF FCIGK Sbjct: 418 QDGLDSHISG-DFLSQDIRECIFFISDIAGEVTNDMVLQNIFQHFCIGK 465 >gi|312873279|ref|ZP_07733334.1| tRNA modification GTPase TrmE [Lactobacillus iners LEAF 2052A-d] gi|311091159|gb|EFQ49548.1| tRNA modification GTPase TrmE [Lactobacillus iners LEAF 2052A-d] Length = 461 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 150/465 (32%), Positives = 261/465 (56%), Gaps = 42/465 (9%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG-----LDGRI 60 +TI A++T ISIIR+SG + ++ I + + AS +G + + Sbjct: 9 DTIAAIATPIGEGGISIIRVSGENALEIVNKIFRGAN-LNKVASHTIHYGHIIDYANKDV 67 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+ L+ V +P++FT E++ E HGG+ V IL+ L R+A PGEF++RAF N Sbjct: 68 VDEVLVTVMLAPKTFTRENTVEVSCHGGLLVTEKILQ-LILDNGARMATPGEFTKRAFIN 126 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFIEADL 176 G+IDL +AES+ D+I ++T+ R+++++ + G E+ L + ++ + H E ++ Sbjct: 127 GRIDLTQAESIMDIIEAKTDRARQVAIKQLEGGLLFEIRKLRQELLNTMAHE----EVNI 182 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D+ E D+ + +SKE+ + + +I ++ + G+++R+G I+G N GKSSL Sbjct: 183 DYPEY-DMDDVTSKEMYDKAQQVIKEIDKLLATAQEGKVVRSGLATAIVGRPNVGKSSLL 241 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N L+K++ AIVT+I GTTRD L + L+G L+K+ DTAGIR+TDDIVEK G++R+ + Sbjct: 242 NYLSKEEKAIVTNIAGTTRDTLEEYVSLKGILLKLIDTAGIRQTDDIVEKIGVERSKRAI 301 Query: 297 ENADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTYTEE-----YDHLI 343 +DL+LLL INS +E++ ++ I I K+D + T++ D I Sbjct: 302 TESDLVLLL--INSSEELTEEDQKLLELTQDKKRIIILNKADQVAKITKKDIQKITDSPI 359 Query: 344 SSFT------GEGLEELINKI--KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL 395 + + GLEE I + + I +K + + + + L ++ + ++ Sbjct: 360 VTISVLKKQNMTGLEEAIKSLFLQGIADSKSEVMVTN--QRQNDLLRKAKQSLIEAIEAI 417 Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 N+ + LD++ +L+ A SLG+ITG ++L+ +FSKFC+GK Sbjct: 418 ND-NMPLDLVQIDLKEAWDSLGEITGDTAPDELITQLFSKFCLGK 461 >gi|309804827|ref|ZP_07698889.1| tRNA modification GTPase TrmE [Lactobacillus iners LactinV 09V1-c] gi|309809783|ref|ZP_07703637.1| tRNA modification GTPase TrmE [Lactobacillus iners SPIN 2503V10-D] gi|308165766|gb|EFO67987.1| tRNA modification GTPase TrmE [Lactobacillus iners LactinV 09V1-c] gi|308169962|gb|EFO72001.1| tRNA modification GTPase TrmE [Lactobacillus iners SPIN 2503V10-D] Length = 461 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 151/465 (32%), Positives = 259/465 (55%), Gaps = 42/465 (9%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG-----LDGRI 60 +TI A++T ISIIR+SG + ++ I + + AS +G + + Sbjct: 9 DTIAAIATPIGEGGISIIRVSGENALEIVNKIFRGAN-LNKVASHTIHYGHIIDYANKDV 67 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+ L V +P++FT E++ E HGG+ V IL+ L R+A PGEF++RAF N Sbjct: 68 VDEVLATVMLAPKTFTRENTVEVSCHGGLLVTEKILQ-LILDNGARMATPGEFTKRAFIN 126 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFIEADL 176 G+IDL +AES+ D+I ++T+ R+++M+ + G E+ L + ++ + H E ++ Sbjct: 127 GRIDLTQAESIMDIIEAKTDRARQVAMKQLEGGLLFEIRKLRQELLNTMAHE----EVNI 182 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D+ E D+ + +SKE+ + + +I ++ + G+++R+G I+G N GKSSL Sbjct: 183 DYPEY-DMDDVTSKEMYDKAQQVIKEIDKLLATAQEGKVVRSGLATAIVGRPNVGKSSLL 241 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N L+K++ AIVT+I GTTRD L + L+G L+K+ DTAGIR+TDDIVEK G++R+ + Sbjct: 242 NYLSKEEKAIVTNIAGTTRDTLEEYVSLKGILLKLIDTAGIRQTDDIVEKIGVERSKRAI 301 Query: 297 ENADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTYTEEYDH------- 341 +DL+LLL INS +E++ ++ I I K+D + T++ Sbjct: 302 TESDLVLLL--INSSEELTEEDQKLLKLTQDKKRIVILNKADQVAKITKKDIQKITDSPI 359 Query: 342 -LISSFTGE---GLEELINKI--KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL 395 IS + GLEE I + + I +K + + + + L ++ + ++ Sbjct: 360 VTISVLKKQNMIGLEEAIKSLFLQGITDSKSEVMVTN--QRQNDLLRKAKQSLIEAIEAI 417 Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 N+ + LD++ +L+ A SLG+ITG ++L+ +FSKFC+GK Sbjct: 418 ND-NMPLDLVQIDLKEAWDSLGEITGDTAPDELITQLFSKFCLGK 461 >gi|158321890|ref|YP_001514397.1| tRNA modification GTPase TrmE [Alkaliphilus oremlandii OhILAs] gi|166988168|sp|A8MKR9|MNME_ALKOO RecName: Full=tRNA modification GTPase mnmE gi|158142089|gb|ABW20401.1| tRNA modification GTPase TrmE [Alkaliphilus oremlandii OhILAs] Length = 461 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 151/465 (32%), Positives = 253/465 (54%), Gaps = 38/465 (8%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFG--LDGR-- 59 +TI A++T + I I+R+SG ++ + I K K K + S R +G +D + Sbjct: 5 DTIAAIATAPGEAGIGIVRISGEKAIELIDKIFKSKDHKVLSQYKSRRITYGHIIDPKTE 64 Query: 60 -ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 ++D+ L+ P ++T ED E + HGG+ V ILE + ++ R+A PGEF++RAF Sbjct: 65 KVVDEVLVSYMKGPNTYTREDIVEINCHGGMIPVKNILELVLRV-GARMAEPGEFTKRAF 123 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG+IDL +AE++ DLIS++TE +++ + G LS + +KL + + +E +DF Sbjct: 124 LNGRIDLAQAEAIMDLISAKTEKGFDVALSQLEGSLSKKVAKVREKLLDMLAHVEVSIDF 183 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 +E+ DV + +LN L ++ DI + G+IIR G VI+G N GKSSL NA Sbjct: 184 AED-DVDEVALDYLLNKSLEVEGDIQKLLDTADTGKIIREGLSTVIVGKPNVGKSSLLNA 242 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L ++ AIVTD+PGTTRD++ L+++G +++ DTAGIR+T+DIVEK G++R+ Sbjct: 243 LVRESRAIVTDVPGTTRDIIEEHLNIKGIPLRLIDTAGIRDTEDIVEKIGVERSKELFNL 302 Query: 299 ADLILLL----KEINSK--KEISFPKNIDFIFIGTKSDLYS----TYTEE--YDHLISSF 346 ADLI+++ +E+ + + I +N + I K+DL T +E D I Sbjct: 303 ADLIIVMLDASRELTEEDLRIIELIENKRALVIINKTDLQQKLNLTPIQEIIQDKKIIKV 362 Query: 347 T----------GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV-RYLEMASL 395 + + L E++ K + + + ++ RH L + + ++ Sbjct: 363 SLIEEIGLEEIEDALAEMVYKGGAKAKDSL------LVTNVRHKNALERALDSIIDGTKA 416 Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E+ LD + +++ + +LG+ITG E ++D IF FCIGK Sbjct: 417 IEQKLPLDFVEVDIKNSWKALGEITGDTVEEDIIDHIFKNFCIGK 461 >gi|154503056|ref|ZP_02040116.1| hypothetical protein RUMGNA_00878 [Ruminococcus gnavus ATCC 29149] gi|153796297|gb|EDN78717.1| hypothetical protein RUMGNA_00878 [Ruminococcus gnavus ATCC 29149] Length = 458 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 157/471 (33%), Positives = 245/471 (52%), Gaps = 50/471 (10%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRIL 61 K+TI A+STG S I I+R+SG F + + I K K+ + S +G + Sbjct: 3 KDTIAAISTGMTNSGIGIVRISGEEAFAIIDRIYKGKEQLSQAESHTIHYGFIKDREETI 62 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121 D+ L+ V +P +FTGED+ E + HGG VV +LE + K R A PGEF++RAF NG Sbjct: 63 DEVLVSVMRAPRTFTGEDTVEINCHGGTFVVRKVLETVIK-NGARPAEPGEFTKRAFLNG 121 Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181 K+DL +AE++ D+I+S+ E + SM + G + + ++ + +FIE LD E Sbjct: 122 KMDLSQAEAVIDVITSQNEYALKSSMSQLKGSVKRKIEEMRKEILYHTAFIETALDDPEH 181 Query: 182 EDVQNFSS--KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 V + + V IL D+ I G I++ G + VI+G NAGKSSL N L Sbjct: 182 ISVDGYGETLQTVTEGILRELEDL---IRSSDDGRILKEGIQTVIVGKPNAGKSSLLNVL 238 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 + ++ AIVTDI GTTRDVL + L+G + I DTAGIR+T+D++EK G+++ ++A Sbjct: 239 SGRERAIVTDIEGTTRDVLEEQIHLQGLSLNIIDTAGIRDTEDVIEKMGVEKAKEYAKSA 298 Query: 300 DLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGL-- 351 DL++ + + N +K ++ + I + K+DL + ++E L G + Sbjct: 299 DLVIYVVDASRSLDENDQKILNLVLDKKAIILLNKTDLETVVSKEM--LAEQLLGREIPM 356 Query: 352 ------EEL-INKIKSILSNKFKK--LPF-------------SIPSHKRHLYHLSQTVRY 389 EEL I +++ L F K L F ++ S + L+ + +++ Sbjct: 357 IEISAKEELGIQELEKTLEKMFLKGSLSFNDEIYITNIRQKAALQSARESLHKVIESI-- 414 Query: 390 LEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E + D + +L A SLG ITG E L++ IFSKFC+GK Sbjct: 415 -------ENEMPEDFYSIDLMDAYESLGSITGETIGEDLVNEIFSKFCMGK 458 >gi|325912241|ref|ZP_08174638.1| tRNA modification GTPase TrmE [Lactobacillus iners UPII 143-D] gi|325475900|gb|EGC79069.1| tRNA modification GTPase TrmE [Lactobacillus iners UPII 143-D] Length = 461 Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 151/465 (32%), Positives = 259/465 (55%), Gaps = 42/465 (9%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG-----LDGRI 60 +TI A++T ISIIR+SG + ++ I + + AS +G + + Sbjct: 9 DTIAAIATPIGEGGISIIRVSGENALEIVNKIFRGAN-LNKVASHTIHYGHIIDYANKDV 67 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+ L+ V +P++FT E++ E HGG+ V IL+ L R+A PGEF++RAF N Sbjct: 68 VDEVLVTVMLAPKTFTRENTVEVSCHGGLLVTQKILQ-LILDNGARMATPGEFTKRAFIN 126 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFIEADL 176 G+IDL +AES+ D+I ++T+ R+++M+ + G E+ L + ++ + H E ++ Sbjct: 127 GRIDLTQAESIMDIIEAKTDRARQVAMKQLEGGLLFEIRKLRQELLNTMAHE----EVNI 182 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D+ E D+ + +SKE+ + + +I ++ + G+++R+G I+G N GKSSL Sbjct: 183 DYPEY-DMDDVTSKEMYDKAHQVIKEIDKLLATAQEGKVVRSGLATAIVGRPNVGKSSLL 241 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N L+K++ AIVT I GTTRD L + L+G L+K+ DTAGIR+TDDIVEK G++R+ + Sbjct: 242 NYLSKEEKAIVTSIAGTTRDTLEEYVSLKGILLKLIDTAGIRQTDDIVEKIGVERSKRAI 301 Query: 297 ENADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTYTEEYDH------- 341 +DL+LLL INS +E++ ++ I I K+D + T++ Sbjct: 302 TESDLVLLL--INSSEELTEEDQKLLELTQDKKRIIILNKADQVAKITKKDIQKITDSPI 359 Query: 342 -LISSFTGE---GLEELINKI--KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL 395 IS + GLEE I + + I +K + + + + L ++ + ++ Sbjct: 360 VTISVLKKQNMIGLEEAIKSLFLQGITDSKSEVMVTN--QRQNDLLRKAKQSLIEAIEAI 417 Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 N+ + LD++ +L+ A SLG+ITG ++L+ +FSKFC+GK Sbjct: 418 ND-NMPLDLVQIDLKEAWDSLGEITGDTAPDELITQLFSKFCLGK 461 >gi|126662354|ref|ZP_01733353.1| tRNA modification GTPase [Flavobacteria bacterium BAL38] gi|126625733|gb|EAZ96422.1| tRNA modification GTPase [Flavobacteria bacterium BAL38] Length = 471 Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 158/477 (33%), Positives = 253/477 (53%), Gaps = 50/477 (10%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFG------- 55 +ETI A++T + AI+IIRLSG + + F K ++ + G Sbjct: 4 QETIVALATPSGAGAIAIIRLSGAAAITIAADVFQSVSGKDITKQKTHTIHLGHIVDAST 63 Query: 56 ---LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGE 112 G++ D+ LL +F P S+TGE+ E HG + I++ L + ++A GE Sbjct: 64 SSGQAGKVYDQVLLSIFKGPNSYTGENVIEISCHGSTFIQQQIIQLLLR-KGAKMAQAGE 122 Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172 F+ RAF NGK+DL +AE++ADLI+S+ E +++M+ M G S+ + ++L + S I Sbjct: 123 FTLRAFLNGKLDLSQAEAVADLIASDNEASHQIAMQQMRGGFSNEIAKLREELLNFASLI 182 Query: 173 EADLDFSEEEDVQNFSSKEVLNDIL-----FLKNDISSHISQGKLGEIIRNGYKIVILGH 227 E +LDF+EE DV+ F+ + +++L LK I S +G +I+NG + I+G Sbjct: 183 ELELDFAEE-DVE-FADRTQFHELLERIEFVLKRLIDSF----AVGNVIKNGIPVAIVGE 236 Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKE 287 N GKS+L NAL ++ AIV+DI GTTRD + +L + G + DTAGIRET D+VE Sbjct: 237 PNVGKSTLLNALLNEERAIVSDIAGTTRDTIEDELVINGMSFRFIDTAGIRETKDVVESI 296 Query: 288 GIKRTFLEVENADLILL------LKEINSKKEI---------SFPKNIDFIFIGTKSDLY 332 GI++TF ++E A ++L + E S + + FP + I K+DL Sbjct: 297 GIQKTFEKIEQAQVVLFILDGRWMMEAGSLEAVKIEFEKIKNKFPLK-PVVVIANKADLL 355 Query: 333 ST-------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ 385 S T E +S+ EG++EL N + S ++ + +I ++ RH L + Sbjct: 356 SADQKNNIQATIENILFLSAKQKEGIDELKNTLLSFVNTGALRNNETIVTNTRHYDSLLK 415 Query: 386 TVRYLEMASLNEKDCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + ++ + GL D++A ++R A G+ITG V ++LL IF+ FCIGK Sbjct: 416 ALEEVQKVKWG-LNSGLSSDLMAIDIRSALYFFGEITGEVTNDELLGNIFANFCIGK 471 >gi|28199975|ref|NP_780289.1| tRNA modification GTPase TrmE [Xylella fastidiosa Temecula1] gi|182682729|ref|YP_001830889.1| tRNA modification GTPase TrmE [Xylella fastidiosa M23] gi|32130200|sp|Q879S5|MNME_XYLFT RecName: Full=tRNA modification GTPase mnmE gi|28058106|gb|AAO29938.1| thiophene and furan oxidation protein [Xylella fastidiosa Temecula1] gi|182632839|gb|ACB93615.1| tRNA modification GTPase TrmE [Xylella fastidiosa M23] gi|307579023|gb|ADN62992.1| tRNA modification GTPase TrmE [Xylella fastidiosa subsp. fastidiosa GB514] Length = 451 Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 144/434 (33%), Positives = 226/434 (52%), Gaps = 19/434 (4%) Query: 20 ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGED 79 I IIR+SG + + PR A F +D +++D GL I FP+P SFTGED Sbjct: 24 IGIIRISGSQIKTIATGLGMTTLR-PRYAHYTRFLDVDDQVIDDGLAIWFPAPHSFTGED 82 Query: 80 SAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET 139 E HG ++ +L + R A PGEFS RAF NGK+DL++AE++AD+I + Sbjct: 83 VLELQGHGSPLLLRQLLTRCLDL-GARQARPGEFSERAFLNGKLDLIQAEAIADMIGAAD 141 Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFL 199 R + + G S +L +R +EA +DF++E + ++ + L Sbjct: 142 LRAARAARRSLDGVFSRRCEALAQQLVRLRIHVEATIDFADES-LDTLDRAQIRTSLQTL 200 Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259 +++ + + G+ + +G V++G N GKSSL NAL D AIVTD+PGTTRD L Sbjct: 201 NVELTQLLRDAEHGKRLCDGLYTVLVGPPNVGKSSLLNALIGSDRAIVTDVPGTTRDTLR 260 Query: 260 IDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL-----KEINS---- 310 + G + DTAG+R D +E+EG++RT E++ ADL L++ +I S Sbjct: 261 ESVHFHGLEFVLVDTAGLRGEGDAIEREGMRRTLNELQRADLALVVLDACDPQIGSLALA 320 Query: 311 KKEISFPKNIDFIFIGTKSDLYSTYTEEYDH---LISSFTGEGLEELINKIKSILSNK-F 366 S P+ ++I K DL + D +S+ TG GL+ L +++++L + Sbjct: 321 DALTSVPR---VLWIHNKLDLLTEPPSVLDTDVIPVSAMTGAGLDTLKTRLRTLLLGETV 377 Query: 367 KKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVE 426 + + + RH+ L +T ++ A+ L++ AE LRLA +LG+I G + + Sbjct: 378 ETIEGEFSARLRHVQALQRTAAHVTDANAQFSYEHLELTAEELRLAYKALGEINGSMSPD 437 Query: 427 QLLDIIFSKFCIGK 440 +LL IFS FCIGK Sbjct: 438 ELLGRIFSNFCIGK 451 >gi|255283806|ref|ZP_05348361.1| tRNA modification GTPase TrmE [Bryantella formatexigens DSM 14469] gi|255265689|gb|EET58894.1| tRNA modification GTPase TrmE [Bryantella formatexigens DSM 14469] Length = 459 Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 149/460 (32%), Positives = 241/460 (52%), Gaps = 31/460 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-----PFPRKASLRYFFGLDG-R 59 +TI A+STG S I I+R+SG F V + + + K P +++Y F DG Sbjct: 6 DTIAAISTGMTSSGIGIVRISGTDAFAVADRMYRAKSGKRLSDMPSH-TIQYGFIADGSE 64 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 I+D+ L+++ +P SFT ED+ E + HGG+ + ILE LA RLA PGEF++RAF Sbjct: 65 IIDEVLVMLMRAPRSFTAEDTVEINCHGGVYAMKRILE-LAVKSGARLAEPGEFTKRAFL 123 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NG+IDL +AE++ D+I ++ E + S+ + G + + +K+ + +FIE+ LD Sbjct: 124 NGRIDLSQAEAVIDVIQAKNEYALKSSVSQLKGSVLKVIRALREKIIYEVAFIESALDDP 183 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 E + + + + I +K ++ I+ + G+ IR G + VI+G NAGKSSL N L Sbjct: 184 EHISLDEYPER-LQEQIRPMKEELEKLIASAENGKRIREGIRTVIVGKPNAGKSSLLNVL 242 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 ++ AIVT+I GTTRD L ++ + G ++I DTAGIR+T D VEK G+++ E+A Sbjct: 243 LGEERAIVTEIAGTTRDTLEEEIQIHGVSLQIIDTAGIRDTQDTVEKIGVEKALAYAEDA 302 Query: 300 DLIL---------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLIS 344 DLIL ++ +I KK I +D + ++ + + +S Sbjct: 303 DLILYVADAATGLDENDIRIMDKIREKKVIVLLNKMDLEVVTSEEQIREILNKPVIP-VS 361 Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL-- 402 + G++ L N IK + K+ F+ + ++ + LE E+ + Sbjct: 362 AKEESGIDILENTIKEMFYE--GKISFNDEVYITNMRQKAALEAALESLCRVEESIAMQM 419 Query: 403 --DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D + +L A LG ITG E L++ IF +FC+GK Sbjct: 420 PEDFFSIDLMSAYEELGNITGESVGEDLINEIFGRFCMGK 459 >gi|153807730|ref|ZP_01960398.1| hypothetical protein BACCAC_02012 [Bacteroides caccae ATCC 43185] gi|149129339|gb|EDM20553.1| hypothetical protein BACCAC_02012 [Bacteroides caccae ATCC 43185] Length = 465 Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 157/469 (33%), Positives = 251/469 (53%), Gaps = 39/469 (8%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP---FPRKASLRYFFG--LDGR 59 ++TI A++T A AI IR+SGP + I K K F + FG DG Sbjct: 3 QDTICAIAT-AQGGAIGSIRVSGPEAISITSRIFKPAKAGKLFNDQKPYTLTFGRIYDGE 61 Query: 60 -ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 I+D+ L+ +F +P S+TGE+S E HG ++ +++ L K R+A PGE+++RAF Sbjct: 62 EIIDEVLVSLFRAPHSYTGENSTEITCHGSSYILQQVMQLLIK-NGCRMAQPGEYTQRAF 120 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NGK+DL +AE++ADLI+S + RL+M M G S +KL + S IE +LDF Sbjct: 121 LNGKMDLSQAEAVADLIASSSAATHRLAMSQMRGGFSKELTDLRNKLLNFTSMIELELDF 180 Query: 179 SEEEDVQNFSSKEVLNDIL-FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 SEE DV+ F+ + L + ++ IS + +G I+NG + I+G +NAGKS+L N Sbjct: 181 SEE-DVE-FADRSALRKLADEIEQVISRLVHSFSVGNAIKNGVPVAIIGETNAGKSTLLN 238 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 L ++ AIV+DI GTTRDV+ +++ G + DTAGIRET+D +E GI+RTF +++ Sbjct: 239 VLLNEERAIVSDIHGTTRDVIEDTINIGGVTFRFIDTAGIRETNDTIESLGIERTFQKLD 298 Query: 298 NADLIL-LLKEINSKKEIS------FPK--NIDFIFIGTKSDLY-STYTEEYDHLISSFT 347 A+++L ++ +N+ +I P+ I + K+DL E+ L+ F+ Sbjct: 299 QAEIVLWMIDSVNAASQIEQLSEKIIPRCEGKHLIAVFNKADLIEEKQKEDLLTLLKDFS 358 Query: 348 GEGLEELI---------NKIKSILSNKFKKLPFS-----IPSHKRHLYHLSQTVRYLEMA 393 E E + +++ +L N LP I ++ RH LS+ + + Sbjct: 359 KEYTESIFISAKQRGNTEELQKMLINA-AHLPTVTQNDIIVTNVRHYEALSKALEAIHRV 417 Query: 394 S--LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L+ + G D +++++R + I G V + +L IF FCIGK Sbjct: 418 QDGLDSQISG-DFLSQDIRECIFFISDIAGEVTNDMVLQNIFQHFCIGK 465 >gi|313205615|ref|YP_004044792.1| tRNA modification GTPase trme [Riemerella anatipestifer DSM 15868] gi|312444931|gb|ADQ81286.1| tRNA modification GTPase trmE [Riemerella anatipestifer DSM 15868] gi|325334957|gb|ADZ11231.1| Predicted GTPase [Riemerella anatipestifer RA-GD] Length = 463 Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 160/470 (34%), Positives = 257/470 (54%), Gaps = 40/470 (8%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLDGR-I 60 ++++TI A++T AI IIR+SG + + I K K + +L Y F + G + Sbjct: 2 NQQDTICALATANGVGAIGIIRVSGDNSINITNTIFKGKDLTKVDSHTLHYGFIVQGEEV 61 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+ ++ +F +P+SFT EDS E HG + IL+ L R+A GEFS RAF N Sbjct: 62 IDEVMISIFKAPKSFTTEDSVEISFHGSPFIGKRILD-LLIANGCRMAKAGEFSMRAFLN 120 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G+IDL +AES+ADLI+SE+E R++++ + G +S+ + L + S IE +LDF+E Sbjct: 121 GRIDLSQAESIADLIASESEAARKVALNQLKGGISNEISILRNDLLNFTSLIELELDFAE 180 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E DV+ E+ + LK+ + + + G ++NG ++ I+G NAGKS+L NAL Sbjct: 181 E-DVEFADRTELTQLLQKLKSKLGGLLESFQYGNAVKNGVQVAIIGKPNAGKSTLLNALL 239 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 K++ AIV+DI GTTRD + L + G+ + DTAGIR+T D VE G+++ ++ AD Sbjct: 240 KEERAIVSDIAGTTRDTIEEVLHIGGHAFRFIDTAGIRDTADRVESIGVEKAKEKINTAD 299 Query: 301 LILLLKEINSKKEISFPKNIDFIFIGTKSDL----------YSTYTEEYDH-------LI 343 ++L L +I K+ + + I+FI + DL S TE D L+ Sbjct: 300 ILLYLFDI---KDSTPNEIINFITSLERPDLKVILLQNKIDSSNETEINDFWKQLKEVLV 356 Query: 344 SSFTG----------EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ---TVRYL 390 +FT + +E L N++ S + + K +I +++RH L + +V+ + Sbjct: 357 PNFTQTILGISAKEEKNIEILKNELVSYIE-ELKTSESTIITNQRHQEALQKSLLSVQKV 415 Query: 391 EMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E A N +++A LR A LG+I+G +++L IF KFCIGK Sbjct: 416 EEAITNR--ISTELLAYELRAAMEYLGEISGEFTNDEVLGNIFGKFCIGK 463 >gi|259502137|ref|ZP_05745039.1| tRNA modification GTPase TrmE [Lactobacillus antri DSM 16041] gi|259169950|gb|EEW54445.1| tRNA modification GTPase TrmE [Lactobacillus antri DSM 16041] Length = 463 Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 146/473 (30%), Positives = 251/473 (53%), Gaps = 46/473 (9%) Query: 2 NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD-- 57 N E +TI A+ST ISIIR+SGP V + + + K R AS +G +D Sbjct: 3 NSENDTIAAISTPVGEGGISIIRISGPDAVAVAKQLYRGSKDLARVASHTINYGHIVDPE 62 Query: 58 -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 G +D+ ++ V +P ++T ED E + HGG+ N IL+ L R+A PGEF++R Sbjct: 63 TGTEVDEVMVSVMRAPHTYTCEDVIEINCHGGLLATNRILQ-LVLSYGARMAEPGEFTKR 121 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NG+IDL ++E++ DLI ++T+ ++++ + G+LS L + + + + +E ++ Sbjct: 122 AFLNGRIDLSQSEAVMDLIRAKTDKSMKVALNQLDGDLSRLIRRLRKDILDVLAQVEVNI 181 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D+ E + V+ ++K + + ++ I + + K G+++R G I+G N GKSSL Sbjct: 182 DYPEYDAVEEMTTKMLKEKAVDIRQRIQALLKTAKQGKVLREGLATAIIGRPNVGKSSLL 241 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF--- 293 N L +D AIVTD+ GTTRDV+ ++++G +K+ DTAGIR+TDD VEK G++R+ Sbjct: 242 NTLLHEDKAIVTDVAGTTRDVIEEYVNVDGVPLKLIDTAGIRDTDDTVEKIGVERSKKAL 301 Query: 294 ---------------LEVENADLILLL---KEINSKKEISFPKNIDFIFIGTKSDLYSTY 335 L E+ +L+ + + I + P+ +D ++L Sbjct: 302 DAADLILLLIDSSAPLTAEDRELLTVTQGKQRIVILNKTDLPRQVDL------AELKQLT 355 Query: 336 TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS--IPSHKRHLYHLSQTVRYLEMA 393 + S EG+++L +I + N+ + S + ++ RH+ L Q A Sbjct: 356 AGDTVIETSIVNHEGMDQLGQRISKMFFNEGIESSQSNVMVTNARHIGLLHQA-----NA 410 Query: 394 SLNEK----DCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +LN+ D G+ D++ ++ LG+ITG ++LLD +FS+FC+GK Sbjct: 411 ALNDVLKGIDDGMPVDLVQIDMTRCWDLLGEITGDSYQDELLDQLFSQFCLGK 463 >gi|85102270|ref|XP_961305.1| hypothetical protein NCU04149 [Neurospora crassa OR74A] gi|16944409|emb|CAC28756.2| related to GTPase MSS1, mitochondrial [Neurospora crassa] gi|28922848|gb|EAA32069.1| hypothetical protein NCU04149 [Neurospora crassa OR74A] Length = 530 Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 170/533 (31%), Positives = 253/533 (47%), Gaps = 115/533 (21%) Query: 19 AISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFF-----GLD---------GRILDK 63 ++++ RL V +C K P PR A++R G D +LD Sbjct: 2 SLAVGRLPLTPSLGVYNSLCPTKLIPKPRYAAVRTLTEPTEPGNDVSSPSAANANNVLDT 61 Query: 64 -GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN---LRLANPGEFSRRAFE 119 L++ FP P++ TGED E HVHGG A V +L + K + +R A GEF++RAF Sbjct: 62 DALVLYFPGPKTVTGEDVLELHVHGGPATVKAVLSAIPKSTSSSTIRYAEQGEFTKRAFL 121 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 N ++DL + E+L D +S+ETE QRR ++ G SG L Y W ++L R IEA +DFS Sbjct: 122 NNRLDLAQVEALGDTLSAETEQQRRAAIRGTSGVLGKTYESWREQLLLARGEIEALIDFS 181 Query: 180 EEEDVQNF--SSKEVLNDILFLKNDISSHISQGKLG----EIIRNGYKIVILGHSNAGKS 233 E+ Q+F S E+L ++ L +I I +LG E++RNG +I +LG N GKS Sbjct: 182 ED---QHFDESPTELLRNVTRLVKEILHSIKLHELGSQRSELLRNGIRIALLGPPNVGKS 238 Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---------- 283 SL N + ++ +IV+ GTTRD++ LD+ GYL +DTAGIR + Sbjct: 239 SLMNLIVGREASIVSSEAGTTRDIVEASLDIRGYLCSFADTAGIRTRSSLLPAEEKEASI 298 Query: 284 --VEKEGIKRTFLEVENADLILLLKEIN-------------------------------S 310 +E+EGI+R + ++D+I++L + + Sbjct: 299 GKIEEEGIRRARQKALDSDVIIVLASVEPHPNGVEGYRLNYDLSTLDLASSAPESLLVIN 358 Query: 311 KKEISFPKNIDFIFIGTKSDLYSTYTEEYDH-------LISSFTGE----GLEEL----I 355 K E P + + K+D+ ST E LIS T E G+++ I Sbjct: 359 KSETVPPSVLAQLIQSFKTDVLSTALPEDSPLRSQDPILISCRTAEQRSGGVDDTDPGKI 418 Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYH--------LSQTVRYLE--MASLN--------- 396 + + S LS+ F +L +IP HL L Q LE MA N Sbjct: 419 HHLISRLSSSFAEL-TAIPQDMEHLLGVTARQNELLGQCRDALEDFMAEANPNPNPAIGE 477 Query: 397 ------EKDCGLDIIAENLRLASVSLGKITG---CVDVEQLLDIIFSKFCIGK 440 E + + + AE+LR+A+ L ITG DVE++L +IF KFC+GK Sbjct: 478 GGITGEEVEADIVLAAEHLRVAAGRLAAITGKGEAGDVEEVLGVIFEKFCVGK 530 >gi|317472412|ref|ZP_07931737.1| tRNA modification GTPase TrmE [Anaerostipes sp. 3_2_56FAA] gi|316900132|gb|EFV22121.1| tRNA modification GTPase TrmE [Anaerostipes sp. 3_2_56FAA] Length = 457 Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 152/458 (33%), Positives = 246/458 (53%), Gaps = 27/458 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFG---LDGRI 60 +TI A++T S I IIR+SGP + F K++K + A+ +G DG+ Sbjct: 4 DTIAAIATPLSSSGIGIIRISGPEAIDIASEVFRPKREKDIKKAATYTAHYGHAVKDGKD 63 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+ +L++ P S+T ED AE + HGG+ V+ IL + + R A PGEF++RAF N Sbjct: 64 IDECILLIMKGPHSYTAEDVAEINCHGGVVVMKKILSCIIE-AGARPAEPGEFTKRAFLN 122 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G+IDL AE++ DLI S+ E S++ + G LS ++ H +FIE+ LD E Sbjct: 123 GRIDLSRAEAVMDLIHSKNEFAMETSLKQLKGSLSEKIRSLRKEIVHSVAFIESALDDPE 182 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 V FS +++ + ++DI ++ G I++ G I+G NAGKSS+ N L Sbjct: 183 HYSVDGFS-EQLKVQVEHARDDIQKYLDSSDNGRILKEGIHTAIVGKPNAGKSSILNVLL 241 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 K+ AIVTDI GTTRD L + + G + + DTAGIR+TDD+VEK G+ + V AD Sbjct: 242 GKERAIVTDIAGTTRDTLEESIQINGIPLNVIDTAGIRDTDDVVEKIGVDKARDSVIKAD 301 Query: 301 LILLLKEIN---SKKEISFPKNID---FIFIGTKSDLYSTYTEE------YDHL--ISSF 346 L+L + + + +K++ K ++ I + KSDL + +E + ++ +S+ Sbjct: 302 LVLYVVDTSVPLTKEDEEIMKLLNGKQVIVLLNKSDLETKVSESEFLDRGFQNIVPVSAK 361 Query: 347 TGEGLEELINKIKSILSNKFKKLPFS---IPSHKRHLYHLSQTVRYLEMASLNEKD-CGL 402 + GLE+L +I + N ++ F+ ++ RH L+ L++ + +D Sbjct: 362 SLYGLEDLYERINDLFFN--GRVSFNDEVYITNMRHKKALANAKDSLDLVLKSIEDRMPE 419 Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D + +L A LG I G E L++ IF++FC+GK Sbjct: 420 DFFSIDLMDAYEELGYIIGESVGEDLVNEIFAEFCMGK 457 >gi|217966557|ref|YP_002352063.1| tRNA modification GTPase TrmE [Dictyoglomus turgidum DSM 6724] gi|217335656|gb|ACK41449.1| tRNA modification GTPase TrmE [Dictyoglomus turgidum DSM 6724] Length = 455 Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 153/459 (33%), Positives = 262/459 (57%), Gaps = 28/459 (6%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFG---LDGR 59 K+ I A++T SAI +IRLSGP+ + + F ++ K + +S +G Sbjct: 2 KDDIVAIATPLGFSAIGVIRLSGPNVINIVKRVFSPRRNKDLEKVSSHTLHYGNIIYKDE 61 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 I+D+ L+ ++ +P S+TGE+ E HG ++ IL+ L + R+A GEF++RAF Sbjct: 62 IIDEVLVAIYKAPNSYTGENMVEIFTHGSPIILEEILKILVE-EGARIAERGEFTKRAFL 120 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NGKIDLL+AES+ ++I +E++ + ++ + GE+S + K+ H+R ++EA +DF Sbjct: 121 NGKIDLLQAESINEIIRAESKTALKRALSKLKGEVSKSLRELKSKVEHLRIYLEASMDFP 180 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 E DV+ ++ L + +K ++S + + + G+ I+ GY+++++G N GKSSLFNAL Sbjct: 181 E--DVEEREREDWLRRLEEIKREVSYLLEKAERGDWIKGGYRVILVGRPNVGKSSLFNAL 238 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 K+D AIVT IPGTTRD + +L L G+LVKI DTAG+ DI++K G+++T +E Sbjct: 239 MKEDRAIVTPIPGTTRDYIEGELYLSSGHLVKIYDTAGLGIPKDILDKMGMEKTEKILEK 298 Query: 299 ADLILLL---------KEINSKKEISFPKNIDFIFIGTKSDL-----YSTYTEEYDHL-I 343 ++LIL + +EIN ++I +N + I + K DL S ++E+ + + + Sbjct: 299 SNLILFVVDGSGEISEEEINLFEKIRSYQNKEIILVINKVDLPQKVELSVFSEDIEKIFV 358 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCG 401 S+ G G+E+L I+ +S+ ++L I + H L + ++ E ++ L Sbjct: 359 SAKEGIGIEDLEKAIERHISS--QELEDGIFLNVYHREKLKEIYQFCEEGISVLINLPQS 416 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LDI+ + L + G+I G + D IF+ FC+GK Sbjct: 417 LDILGDILYDMEKAFGEILGEEVSLDIADKIFANFCVGK 455 >gi|163791744|ref|ZP_02186131.1| tRNA modification GTPase [Carnobacterium sp. AT7] gi|159872986|gb|EDP67103.1| tRNA modification GTPase [Carnobacterium sp. AT7] Length = 462 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 150/463 (32%), Positives = 244/463 (52%), Gaps = 24/463 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK-KKPFPRKASLRYFFG---- 55 M E ETI A+ST AI I+RLSG ++ + + + K + S +G Sbjct: 1 MTLEFETIAAISTPPGEGAIGIVRLSGDQAIEIADRVYRSGSKALAEQKSHTIHYGHIEN 60 Query: 56 -LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114 +D+ ++ V P++FT ED E + HGGI VN +L+ + + RLA PGEF+ Sbjct: 61 PKTNETIDEVMVSVMREPKTFTREDVVEINCHGGITSVNQVLQCVLQ-NGARLAEPGEFT 119 Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174 +RAF NG+IDL +AE++ DLI ++T+ ++++ + G LS L + + +E Sbjct: 120 KRAFLNGRIDLSQAEAVMDLIRAKTDRAMHVALKQLDGNLSHLIRNLRMDILDTLAQVEV 179 Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234 ++D+ E +DV+ +SK ++ +K I ++ G+I+R G I+G N GKSS Sbjct: 180 NIDYPEYDDVEEMTSKLLIEKAKLVKASIQQLLATASQGKILREGLATAIIGRPNVGKSS 239 Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294 L N L ++ AIVTDI GTTRDV+ + + G +K+ DTAGIRET+DI+E+ G++R+ Sbjct: 240 LLNYLLDEEKAIVTDIAGTTRDVIEEYISVRGVPLKLIDTAGIRETEDIIERIGVERSRQ 299 Query: 295 EVENADLILLL------KEINSKKEISFPKNIDFIFIGTKSDLYSTYT-EEYDHLI---- 343 + +ADL+LL+ I K I I I K DL + E + L+ Sbjct: 300 ALSDADLVLLVFNQSEPLTIEDKALIEATNQHRRIVILNKMDLPNKLDLAELETLVEPES 359 Query: 344 ----SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNE 397 S + G++ L I ++ + + + + S+ RH+ L+ L E+ S E Sbjct: 360 IVKTSILSKSGIDVLEKNIANLFFTGQTGERDATYVSNVRHIALLNDAEEALDEVISGVE 419 Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D+I ++ LG+ITG ++LL +FS+FC+GK Sbjct: 420 MGMPVDLIQIDMTRCWDLLGEITGDSVQDELLTQLFSQFCLGK 462 >gi|323694902|ref|ZP_08109052.1| tRNA modification GTPase TrmE [Clostridium symbiosum WAL-14673] gi|323500992|gb|EGB16904.1| tRNA modification GTPase TrmE [Clostridium symbiosum WAL-14673] Length = 462 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 153/460 (33%), Positives = 242/460 (52%), Gaps = 30/460 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK---KKKPFPRKASLRYFFG--LDG-R 59 +TI A++T S I IIR+SG F + + I + K+K + + +G DG Sbjct: 8 DTIAAIATALTNSGIGIIRVSGNEAFDIVDRIFRPKNKRKKLKEEKTYTVHYGHIQDGDE 67 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 I+D+ L IV P S+T ED+ E HGG+ V+ ILE + K R+A PGEF++RAF Sbjct: 68 IIDEVLAIVMRGPHSYTAEDTVEIDCHGGVLVMKKILETVIKY-GARMAEPGEFTKRAFL 126 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NG+IDL +AE++ D+I+S+ + S+ +SG +S + +KL +FIE+ LD Sbjct: 127 NGRIDLSQAEAVIDVINSKNNYALKSSVSQLSGSMSKKVKELREKLLFEIAFIESALDDP 186 Query: 180 EEEDVQNFSSK--EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 E + + K +ND ++ +++ IS G ++ G + VILG NAGKSSL N Sbjct: 187 EHISLDGYPEKLKVTVND---MQEELNRAISTFDSGRVLSEGIRTVILGKPNAGKSSLMN 243 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 L ++ AIVTDI GTTRD L ++ L G + I DTAGIRET+D+VEK G+ + + Sbjct: 244 VLVGEERAIVTDIAGTTRDTLEENIRLHGISLNIVDTAGIRETEDVVEKIGVDKARANAD 303 Query: 298 NADLIL---------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL 342 +ADL++ ++ I +K I D + T ++ +E Sbjct: 304 DADLLIYVVDGSCPLDENDYQIMNLIEGRKSIVLLNKTDLEMVLTPEEIKEKTGKEV-VA 362 Query: 343 ISSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDC 400 +S+ G++ L KIK + LS + + ++ RH +S+ ++ L + + E Sbjct: 363 VSAKEQRGIDLLEEKIKELFLSGEIDFNDEVMITNVRHKTAMSEALKSLSLVKQSIEDQM 422 Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D + +L A LG I G + L++ IF+KFC+GK Sbjct: 423 PEDFYSIDLMNAYEQLGTIIGESLEDDLVNEIFNKFCMGK 462 >gi|266620968|ref|ZP_06113903.1| tRNA modification GTPase TrmE [Clostridium hathewayi DSM 13479] gi|288867390|gb|EFC99688.1| tRNA modification GTPase TrmE [Clostridium hathewayi DSM 13479] Length = 459 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 155/460 (33%), Positives = 249/460 (54%), Gaps = 31/460 (6%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKAS------LRYFFGLDG-R 59 TI A++T S I I+R+SG F + + I + K RK S + Y + DG Sbjct: 5 TIAAIATAMSSSGIGIVRISGDEAFTIIDKIYRVKGKNSRKLSDAPSHTIHYGYIADGDE 64 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 I+D+ L+++ P+SFT ED+ E HGG+ + ILE + K R A PGEF++RAF Sbjct: 65 IIDEVLVMLMRGPKSFTAEDTVEIDCHGGVLITKKILETVLKY-GARPAEPGEFTKRAFL 123 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NG+IDL +AE++ D+I+S+ + + S+ + G +S+ + +++ + +FIE+ LD Sbjct: 124 NGRIDLAQAEAVIDVINSKNDYALKASVSQLDGAVSNAVKKLREQIIYQIAFIESALDDP 183 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 E + + + +L+ I LK + I G ++ G K VILG NAGKSSL N L Sbjct: 184 EHISLDGYG-ESLLSVIQGLKEGLWKLIRSADNGRVMTEGIKTVILGKPNAGKSSLLNVL 242 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 ++ AIVTD+ GTTRD L + LE + + DTAGIR+TDDIVEK G+++ + A Sbjct: 243 VGEERAIVTDVAGTTRDTLEETIRLEDITLNVIDTAGIRDTDDIVEKIGVEKARNAADAA 302 Query: 300 DLILLLK------EINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY-----DHLISSFTG 348 DLI+ + + N ++ + F K+ + + KSDL T + H + + + Sbjct: 303 DLIIYVVDGSCPLDENDEEILKFIKDRKAVVLLNKSDLTMEITADMLASRTAHRVIAISA 362 Query: 349 E---GLEELINKIKSILSNKFKKLPFS---IPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402 + G+E L ++IK++ + ++ F+ ++ RH L Q LEM + ++ G+ Sbjct: 363 KERVGIELLEDEIKTMFYH--GEIDFNDEVTITNVRHKNALEQAYSSLEMVEQSIQN-GM 419 Query: 403 --DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D + +L A LG I G + L+ IFSKFC+GK Sbjct: 420 PEDFYSIDLMDAYEQLGLIIGEAVEDDLVHEIFSKFCMGK 459 >gi|332878607|ref|ZP_08446327.1| tRNA modification GTPase TrmE [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683508|gb|EGJ56385.1| tRNA modification GTPase TrmE [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 469 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 151/469 (32%), Positives = 250/469 (53%), Gaps = 35/469 (7%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK--KKPFPRKASLRYFFGL---D 57 + +TI A++T AI +IRLSG + + I K KP A+ G+ + Sbjct: 5 YTSDTIVALATATGAGAIGVIRLSGNEAIAIADTIFKAHHAKPLAEVATHTVHLGMIEAE 64 Query: 58 GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEE-LAKMPNLRLANPGEFSRR 116 G +D+ L VF S+TGE EF HG ++ +++ LAK RLA GEF++R Sbjct: 65 GHQIDECLATVFKGQRSYTGEPVVEFSCHGSSYIIAQVMKSCLAK--GARLAEAGEFTKR 122 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NGK+ L +AE++ADLI+S++E R++++ M G +S +L + S IE +L Sbjct: 123 AFLNGKMALSQAEAVADLIASDSEASHRVALQQMRGGFASEIETLRGELLNFASLIELEL 182 Query: 177 DFSEEEDVQNFSSKEVLNDIL-FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 DF+EE DV F+ ++ +L +K I+ ++ +G +++NG + I+G NAGKS+L Sbjct: 183 DFAEE-DVA-FADRDSFKALLSHIKQTITQLVASFSVGNVLKNGMPVAIVGKPNAGKSTL 240 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 NAL ++ AIV+DI GTTRD + L + G + DTAGIRET D +E G++R + Sbjct: 241 LNALLNEERAIVSDIAGTTRDTIEEVLHIGGIAFRFIDTAGIRETHDAIEAIGVQRAKEK 300 Query: 296 VENADLILLL--------KEINSKKEISFPKNIDFIFIGTKSDLYS----TYTEEYDHL- 342 + A +++ L ++ + + + + + F+ + K DLY+ T+ E+ H Sbjct: 301 IAKAQIVIFLYNQYDDTVADVVAFVKEHYREGVFFVLVHNKIDLYTEGVHTFDEQVRHAL 360 Query: 343 ----ISSFTGEGLEEL-INKIKSILSNKFKKL-----PFSIPSHKRHLYHLSQTVRYLEM 392 I+ T E + + ++K L+N +++ ++ ++ RH L Q + +E Sbjct: 361 VGYNITLLTLSAKERVYLEELKQSLTNYAQQINKAAAGNTVVTNLRHYEALQQALTAVER 420 Query: 393 ASLN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D++A ++R LG ITG V +++L IFSKFCIGK Sbjct: 421 VEEGLASGLSADLLAIDIRETLYYLGSITGAVSNDEVLGNIFSKFCIGK 469 >gi|313124784|ref|YP_004035043.1| tRNA modification GTPase mnme [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312281347|gb|ADQ62066.1| tRNA modification GTPase mnmE [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 461 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 155/465 (33%), Positives = 259/465 (55%), Gaps = 38/465 (8%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLD---G 58 E +TI A+ST ISI+R+SG + + K K + P ++ Y +D G Sbjct: 7 EFDTIAAISTPLGEGGISIVRVSGEDAVAIVNRLFKGKDLEKVPSH-TINYGHIVDPATG 65 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 +++D+ + V +P++FT ED E + HGGI V N IL+ L R+A+PGEF++RAF Sbjct: 66 QVIDEVMASVMLAPKTFTKEDIVEINCHGGIVVTNDILQ-LLLANGARMADPGEFTKRAF 124 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFIEA 174 NG+IDL +AES+ D+I ++T+ R+++++ +SG E+ +L + +D L ++ E Sbjct: 125 VNGRIDLTQAESVMDIIRAKTDKARQVAVKQLSGGLLTEIRALRQEILDVLANV----EV 180 Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234 ++D+ E D + +++++L + I + + G+I+RNG K I+G N GKSS Sbjct: 181 NIDYPEY-DEEEVTAQKMLACAEAVSGKIDRLLETAQEGQILRNGLKTAIVGRPNVGKSS 239 Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294 L N L + D AIVTD+ GTTRD L + ++G +++ DTAGI T+D VEK G++R+ Sbjct: 240 LLNYLTQSDKAIVTDVAGTTRDTLEEFVSVKGVPLELIDTAGIHHTEDQVEKIGVERSKK 299 Query: 295 EVENADLILLL----KEIN--SKKEISFPKNIDFIFIGTKSDLYSTYT------EEYDHL 342 + ADLILLL +E+ ++ + I + K+DL T E + Sbjct: 300 AIAQADLILLLLDGSQELTEEDRRLLELTAGKKRIIVLNKTDLGQKLTAAEIAKESGSEV 359 Query: 343 ISS--FTGEGLEELINKIKSILSNKFKKLPFS----IPSHKRHLYHLSQTVRYL-EMASL 395 IS+ E L+EL IK + FK + S + +++R L++ + L ++AS Sbjct: 360 ISTSIMMKENLDELEALIKKLF---FKGIENSNDQVLVTNQRQAGLLAKAKQQLADVASG 416 Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E +D++ + A SLG+ITG ++L++ +FS+FC+GK Sbjct: 417 LEAGMPVDLVQIDFTGAWESLGEITGDSAPDELINDLFSQFCLGK 461 >gi|325283727|ref|YP_004256268.1| tRNA modification GTPase mnmE [Deinococcus proteolyticus MRP] gi|324315536|gb|ADY26651.1| tRNA modification GTPase mnmE [Deinococcus proteolyticus MRP] Length = 443 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 120/356 (33%), Positives = 192/356 (53%), Gaps = 12/356 (3%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL----DGRIL 61 +TI AV+T + + ++R+SGP + + + ++ R+ FG G +L Sbjct: 12 DTIAAVATAPGHAGVGVVRVSGPQALHIADALFSGRRRPSSTPGGRFLFGRLLAEGGEVL 71 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121 D+GL +VF +P S+TGED AEF HG AV+ +L + R A PGEF+ RA+ G Sbjct: 72 DEGLCLVFRAPHSYTGEDVAEFQTHGSPAVLGEVLTRALDL-GARPARPGEFTLRAYLAG 130 Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181 ++DL +AE++ +L+ S TE RR + G+SG L LT S I A LD+ EE Sbjct: 131 RLDLAQAEAVLNLVESSTETARRQATLGLSGALGERVDAIARDLTLTLSSIAALLDYPEE 190 Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 +E + ++ + + + G + G +I ++G NAGKSSL NAL Sbjct: 191 ----GVPEEERQVPLARAAAELEALLGTARAGRVANQGARIALIGAPNAGKSSLLNALLG 246 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 + +IVT + GTTRD L L L G V + DTAG+R+T+D+VE G+++ + AD+ Sbjct: 247 YERSIVTPLAGTTRDYLEAGLSLAGVPVTLVDTAGLRDTEDVVEAAGVRQAHALAQGADV 306 Query: 302 ILLLKEINSKKE---ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEEL 354 +L L + + +E ++ P I + TK+DL + + + +S+ TG+GL +L Sbjct: 307 VLTLSDGSQPREPLPLALPAGARAIHLRTKADLPAAWDDPAYLPVSAATGQGLPQL 362 >gi|300812005|ref|ZP_07092461.1| tRNA modification GTPase TrmE [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497031|gb|EFK32097.1| tRNA modification GTPase TrmE [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 461 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 155/465 (33%), Positives = 259/465 (55%), Gaps = 38/465 (8%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLD---G 58 E +TI A+ST ISI+R+SG + + K K + P ++ Y +D G Sbjct: 7 EFDTIAAISTPLGEGGISIVRVSGEDAVAIVNRLFKGKDLEKVPSH-TINYGHIVDPATG 65 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 +++D+ + V +P++FT ED E + HGGI V N IL+ L R+A+PGEF++RAF Sbjct: 66 QVIDEVMASVMLAPKTFTKEDIVEINCHGGIVVTNDILQ-LLLANGARMADPGEFTKRAF 124 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFIEA 174 NG+IDL +AES+ D+I ++T+ R+++++ +SG E+ +L + +D L ++ E Sbjct: 125 VNGRIDLTQAESVMDIIRAKTDKARQVAVKQLSGGLLTEIRALRQEILDVLANV----EV 180 Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234 ++D+ E D + +++++L + I + + G+I+RNG K I+G N GKSS Sbjct: 181 NIDYPEY-DEEEVTAQKMLACAEAVSGKIDRLLETAQEGQILRNGLKTAIVGRPNVGKSS 239 Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294 L N L + D AIVTD+ GTTRD L + ++G +++ DTAGI T+D VEK G++R+ Sbjct: 240 LLNYLTQSDKAIVTDVAGTTRDTLEEFVSVKGVPLELIDTAGIHHTEDQVEKIGVERSKK 299 Query: 295 EVENADLILLL----KEIN--SKKEISFPKNIDFIFIGTKSDLYSTYT------EEYDHL 342 + ADLILLL +E+ ++ + I + K+DL T E + Sbjct: 300 AIAQADLILLLLDGSQELTEEDRRLLELTAGKKRIIVLNKTDLGQKLTAAEIAKESGSEV 359 Query: 343 ISS--FTGEGLEELINKIKSILSNKFKKLPFS----IPSHKRHLYHLSQTVRYL-EMASL 395 IS+ E L+EL IK + FK + S + +++R L++ + L ++AS Sbjct: 360 ISTSIMMKENLDELEALIKKLF---FKGIENSNDQVLVTNQRQAGLLAKAKQQLADVASG 416 Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E +D++ + A SLG+ITG ++L++ +FS+FC+GK Sbjct: 417 LESGMPVDLVQIDFTGAWESLGEITGDSAPDELINDLFSQFCLGK 461 >gi|229551112|ref|ZP_04439837.1| tRNA modification GTP-binding protein TrmE [Lactobacillus rhamnosus LMS2-1] gi|258541097|ref|YP_003175596.1| tRNA modification GTPase TrmE [Lactobacillus rhamnosus Lc 705] gi|229315504|gb|EEN81477.1| tRNA modification GTP-binding protein TrmE [Lactobacillus rhamnosus LMS2-1] gi|257152773|emb|CAR91745.1| tRNA modification GTPase MnmE [Lactobacillus rhamnosus Lc 705] Length = 462 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 145/457 (31%), Positives = 246/457 (53%), Gaps = 25/457 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLD---GRIL 61 +TI A+ST AISI+RLSG + + K K K+ ++ Y +D G ++ Sbjct: 9 DTIAAISTPPGEGAISIVRLSGETAVATANKVFKGKDLTQVKSHTIHYGHIVDPETGDLI 68 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121 D+ ++ V +P++FT ED E + HGGI N IL+ L R+A PGEF++RAF NG Sbjct: 69 DEVMVSVMLAPKTFTREDVVEINCHGGIVATNRILQLLLG-EGARMAEPGEFTKRAFLNG 127 Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181 +IDL EAES+ DLI ++T+ ++++ + G L L Q ++ + + +E ++D+ E Sbjct: 128 RIDLTEAESVMDLIRAKTDRAMQVAVNQLDGNLHHLIKQLRQEILEVLAQVEVNIDYPEY 187 Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 D ++K +L +K I ++ G+++R G I+G N GKSSL N + Sbjct: 188 -DTDEMTTKMLLEKAQTVKKAIEQLLTTASQGKVLREGLATAIVGRPNVGKSSLLNHMLH 246 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 ++ AIVTD+ GTTRDVL +++ G +K+ DTAGI +T D VEK G++R+ + ADL Sbjct: 247 EEKAIVTDVAGTTRDVLEEYVNVRGVPLKLVDTAGIHDTTDKVEKIGVERSRQAITQADL 306 Query: 302 ILLLKE------INSKKEISFPKNIDFIFIGTKSDLYSTYTE-------EYDHLISSF-- 346 ILL+ + K+ ++ + I + K DL + + D +I + Sbjct: 307 ILLVLDQSEPLTTEDKQLLAATADKKRIIVLNKQDLPARLDTAALLQLVDADEIIKTAIP 366 Query: 347 TGEGLEELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLE--MASLNEKDCGLD 403 T +G++ L +I + + ++ S+ R + L Q + L+ MA ++ +D Sbjct: 367 TSDGMDALDERIAKLFFGGIENSQGTVMVSNARQIGLLRQASKSLDAVMAGIH-AGMPID 425 Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++ ++ A LG+ITG ++L+ +FS+FC+GK Sbjct: 426 LVQIDMTAAWDKLGEITGESAPDELITQLFSQFCLGK 462 >gi|311747167|ref|ZP_07720952.1| tRNA modification GTPase TrmE [Algoriphagus sp. PR1] gi|126578876|gb|EAZ83040.1| tRNA modification GTPase TrmE [Algoriphagus sp. PR1] Length = 460 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 157/455 (34%), Positives = 247/455 (54%), Gaps = 24/455 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL--DG-RILD 62 +TI A++T AI++IRLSG ++ + K ++ S FG DG +++D Sbjct: 10 DTIIALATPQGVGAIAVIRLSGQDAIKLTNEVFFGKN-LEKQDSHTIHFGTIRDGEKVID 68 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 + L+ +F +P+SFT E+ E HG ++N +++ K +R A GEF++RAF NG+ Sbjct: 69 EVLVSLFIAPKSFTKENVVEISTHGSSYIINQVIKLFLK-KGVRPAKAGEFTQRAFLNGQ 127 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 DL +AE++ADLI +++E ++ M G S +KL H S IE +LDF EE Sbjct: 128 FDLAQAEAVADLIHADSEASHSAALSQMRGGFSGEIQVLREKLIHFASMIELELDFGEE- 186 Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 DV+ S E+ + L + I LG +I+NG VI G NAGKS+L NAL + Sbjct: 187 DVEFASRTELQELVERLLRVVEELILSFDLGNVIKNGVPTVIAGKPNAGKSTLLNALLNE 246 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 + AIV+DI GTTRD++ ++++ G + + DTAG+RET D +E G+ RT +++ A LI Sbjct: 247 EKAIVSDIAGTTRDLIEDEINIGGVIFRFIDTAGLRETTDTIEAIGVSRTQEKMKTASLI 306 Query: 303 LLLKEINSKKEISFPKNID--------FIFIGTKSD-----LYSTYTEEYDH--LISSFT 347 L L ++ + ++++ F+ I K D L S +Y IS+ Sbjct: 307 LYLFDLGDTDLVEINRDVNKLENLGVPFLKIANKLDKANPELVSELKSKYPDTIFISAGN 366 Query: 348 GEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTV-RYLEMASLNEKDCGLDII 405 E LE L KI +++ +KFK +I ++ RH L +T L++ + D + Sbjct: 367 KENLEGLKVKILELVNLDKFKT-GNTIVTNVRHYDSLIKTRDSLLDILRGIDDQITNDFV 425 Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A ++R + LG+ITG + + LL IFSKFCIGK Sbjct: 426 AMDIRRSLHYLGEITGEITTDDLLANIFSKFCIGK 460 >gi|300868767|ref|ZP_07113378.1| tRNA modification GTPase mnmE [Oscillatoria sp. PCC 6506] gi|300333328|emb|CBN58570.1| tRNA modification GTPase mnmE [Oscillatoria sp. PCC 6506] Length = 464 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 153/462 (33%), Positives = 243/462 (52%), Gaps = 33/462 (7%) Query: 6 ETIFAVSTGALPS--AISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL----- 56 +TI A++T +P ++ I+R+SG + F + + S R +G Sbjct: 9 QTIAAIATAIVPQQGSVGIVRVSGDEAIAIAHTLFHAPGNQIWE---SHRILYGYIRHPQ 65 Query: 57 DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 +++D+ LL++ +P S+T ED EFH HGGI V +L+ L RLA GEF+ R Sbjct: 66 SQQLVDEALLLIMKAPRSYTREDVVEFHCHGGIMAVQQVLQ-LCLESGARLAQAGEFTLR 124 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NG++DL +AES+ADL+ + + + ++ G+ G+L++ + + + IEA + Sbjct: 125 AFLNGRLDLSQAESVADLVGARSPAAAQAALAGLQGKLATPIRELRATCLDVLAEIEARI 184 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 DF EED+ + I + ++S ++ GE++R+G K+ I+G N GKSSL Sbjct: 185 DF--EEDLPPLDEGAIALQIQHILAELSRILATADSGELLRSGLKVAIVGRPNVGKSSLL 242 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 NA ++ D AIVTD+PGTTRDV+ L + G +++ DTAGIRET+D VEK G+ R+ Sbjct: 243 NAWSRCDRAIVTDLPGTTRDVVESQLVVGGIPIQVLDTAGIRETEDRVEKIGVARSRQAA 302 Query: 297 ENADLILLLKEINS-----KKEI-SFPKNIDFIFIGTKSDLYS----------TYTEEYD 340 E+ADL+LL + + +EI K+ I I K DL S + Sbjct: 303 ESADLVLLAIDAAAGWTEGDREIYQQVKHRPVILIVNKVDLVSEKDLEILQSKIENPQAK 362 Query: 341 HLISSFTGEGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM-ASLNEK 398 L ++ +G+E+L I ++ + + + ++R L++ LE A Sbjct: 363 VLAAAAYNQGIEDLEQAILTAVNAGDLQAGNLDLAINQRQAAALTRAKISLEQCADTINN 422 Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LD +LR A +LG+ITG E +LD IFS+FCIGK Sbjct: 423 QLPLDFWTIDLRGAIQALGEITGEGVTESVLDRIFSRFCIGK 464 >gi|116496320|ref|YP_808054.1| tRNA modification GTPase TrmE [Lactobacillus casei ATCC 334] gi|191639864|ref|YP_001989030.1| tRNA modification GTPase TrmE [Lactobacillus casei BL23] gi|227533513|ref|ZP_03963562.1| tRNA modification GTPase TrmE [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239630797|ref|ZP_04673828.1| tRNA modification GTPase TrmE [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301067924|ref|YP_003789947.1| tRNA modification GTPase, TrmE [Lactobacillus casei str. Zhang] gi|122262283|sp|Q033L0|MNME_LACC3 RecName: Full=tRNA modification GTPase mnmE gi|116106470|gb|ABJ71612.1| tRNA modification GTPase trmE [Lactobacillus casei ATCC 334] gi|190714166|emb|CAQ68172.1| tRNA modification GTPase trmE [Lactobacillus casei BL23] gi|227188842|gb|EEI68909.1| tRNA modification GTPase TrmE [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239527080|gb|EEQ66081.1| tRNA modification GTPase TrmE [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300440331|gb|ADK20097.1| tRNA modification GTPase, TrmE [Lactobacillus casei str. Zhang] gi|327383978|gb|AEA55454.1| TRNA modification GTPase TrmE:Small GTP-binding protein [Lactobacillus casei LC2W] gi|327387162|gb|AEA58636.1| TRNA modification GTPase TrmE:Small GTP-binding protein domain:GTP-binding [Lactobacillus casei BD-II] Length = 462 Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 147/457 (32%), Positives = 246/457 (53%), Gaps = 25/457 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLD---GRIL 61 +TI A+ST AISI+RLSG + + K K K+ ++ Y +D G ++ Sbjct: 9 DTIAAISTPPGEGAISIVRLSGETAVATANQVFKGKDLSQVKSHTIHYGHIVDPESGELI 68 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121 D+ ++ V +P++FT ED E + HGGI N IL+ L R+A PGEF++RAF NG Sbjct: 69 DEVMVSVMLAPKTFTREDVVEINCHGGIVATNRILQLLLG-EGARMAEPGEFTKRAFLNG 127 Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181 +IDL EAES+ DLI ++T+ ++++ + G L +L + ++ + + +E ++D+ E Sbjct: 128 RIDLTEAESVMDLIRAKTDRAMQVAVNQLDGNLHTLIKRLRQEILEVLAQVEVNIDYPEY 187 Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 D ++K +L ++ IS+ +S G+++R G I+G N GKSSL N + Sbjct: 188 -DTDEMTTKMLLEKAQTVQKAISNLLSTASQGKVLREGLATAIVGRPNVGKSSLLNHMLH 246 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 +D AIVTD+ GTTRDVL +++ G +K+ DTAGI +T D VEK G++R+ + ADL Sbjct: 247 EDKAIVTDVAGTTRDVLEEYVNVRGVPLKLVDTAGIHDTTDKVEKIGVERSRQAITQADL 306 Query: 302 ILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEY-------DHLISSF-- 346 ILL+ + + ++ I N I + K DL + D +I + Sbjct: 307 ILLVLDQSEPLTDEDEQLIQATANKKRIIVLNKQDLPAQLDTTALLKLVSPDEIIKTAIP 366 Query: 347 TGEGLEELINKIKSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYLEMASLNEKDCGL--D 403 T G++ L +I + + ++ S+ R + L Q + L+ A + G+ D Sbjct: 367 TSAGMDALDERIAKLFFGGIENSQTTVMVSNARQIGLLRQANKSLD-AVIAGIHAGMPID 425 Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++ ++ A LG+ITG ++L+ +FS+FC+GK Sbjct: 426 LVQIDMTAAWDKLGEITGESAPDELITQLFSQFCLGK 462 >gi|323486760|ref|ZP_08092079.1| hypothetical protein HMPREF9474_03830 [Clostridium symbiosum WAL-14163] gi|323399899|gb|EGA92278.1| hypothetical protein HMPREF9474_03830 [Clostridium symbiosum WAL-14163] Length = 462 Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 152/460 (33%), Positives = 242/460 (52%), Gaps = 30/460 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK---KKKPFPRKASLRYFFG--LDG-R 59 +TI A++T S I IIR+SG F + + I + K+K + + +G DG Sbjct: 8 DTIAAIATALTNSGIGIIRVSGNEAFDIVDRIFRPKNKRKKLKEEKTYTVHYGHIQDGDE 67 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 I+D+ L I+ P S+T ED+ E HGG+ V+ ILE + K R+A PGEF++RAF Sbjct: 68 IIDEVLAIIMRGPHSYTAEDTVEIDCHGGVLVMKKILETVIKY-GARMAEPGEFTKRAFL 126 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NG+IDL +AE++ D+I+S+ + S+ +SG +S + +KL +FIE+ LD Sbjct: 127 NGRIDLSQAEAVIDVINSKNNYALKSSVSQLSGSMSKKVKELREKLLFEIAFIESALDDP 186 Query: 180 EEEDVQNFSSK--EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 E + + K +ND ++ +++ IS G ++ G + VILG NAGKSSL N Sbjct: 187 EHISLDGYPEKLKVTVND---MQEELNRAISTFDSGRVLSEGIRTVILGKPNAGKSSLMN 243 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 L ++ AIVTDI GTTRD L ++ L G + I DTAGIRET+D+VEK G+ + + Sbjct: 244 VLVGEERAIVTDIAGTTRDTLEENIRLHGISLNIVDTAGIRETEDVVEKIGVDKARANAD 303 Query: 298 NADLIL---------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL 342 +ADL++ ++ I +K I D + T ++ +E Sbjct: 304 DADLLIYVVDGSCPLDENDYQIMNLIEGRKSIVLLNKTDLEMVLTPEEIKEKTGKEV-VA 362 Query: 343 ISSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDC 400 +S+ G++ L KIK + LS + + ++ RH +S+ ++ L + + E Sbjct: 363 VSAKEQRGIDLLEEKIKELFLSGEIDFNDEVMITNVRHKTAMSEALKSLSLVKQSIEDQM 422 Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D + +L A LG I G + L++ IF+KFC+GK Sbjct: 423 PEDFYSIDLMNAYEQLGTIIGESLEDDLVNEIFNKFCMGK 462 >gi|39939233|ref|NP_950999.1| tRNA modification GTPase TrmE [Onion yellows phytoplasma OY-M] gi|81402190|sp|Q6YPI0|MNME_ONYPE RecName: Full=tRNA modification GTPase mnmE gi|39722342|dbj|BAD04832.1| tRNA modification GTPase [Onion yellows phytoplasma OY-M] Length = 460 Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 153/466 (32%), Positives = 240/466 (51%), Gaps = 40/466 (8%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLR---YFFGLDGRILD 62 +TI A+ST +S+IR+SG + I K K K + + ILD Sbjct: 4 DTIAAISTPLGTGGVSVIRVSGNNSIAEINKIFKGKDLTKTKTHTITHGFILNKNQTILD 63 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 + L+ VF +P SFTGE+ E + HGGI + +LE + + ++RLA PGEFS+RA+ NGK Sbjct: 64 EVLISVFKTPNSFTGENVVEINAHGGILITQMVLERVLSL-DIRLAFPGEFSQRAYLNGK 122 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 +DL++AES+ DLI + E +++ G+ S L D++ ++ + IE ++D+ E + Sbjct: 123 MDLIQAESIMDLIHATNENAIKIAHSGLQKYTSQLVTSLRDQILNLIAQIEVNIDYPEYD 182 Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 D+ + +++ ++ L + + ++ ++ G K +I+G N GKSSL NA + Sbjct: 183 DIPQITQQKIALEVKSLIKQLENILNHSHKNRYLKEGIKTLIVGRPNVGKSSLLNAFLNE 242 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 AIV+DI GTTRD + + +G + + DTAGIR+TDD +EK GI RT + A+LI Sbjct: 243 TKAIVSDISGTTRDFVEAYFNCQGITLHLIDTAGIRKTDDPIEKIGILRTEKMLLQAELI 302 Query: 303 LLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLI------------- 343 LL+ + N+ + + KN I IG K+DL S D LI Sbjct: 303 LLVLDQNNHLQEEDIQLLQLTKNHPRIIIGNKADLKS------DKLISSLSNNSSQLAPQ 356 Query: 344 -----SSFTGEGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRY---LEMAS 394 SS G EL I K N + F+ S+ RH+ + +R L+ A Sbjct: 357 EIISVSSLDKTGFLELQQTILKKFQLNDIQPKDFNYFSNARHINQIQIALRSFQDLQQAL 416 Query: 395 LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L + +DI + +L A +LG+I G L+ +FSKFC+GK Sbjct: 417 L--QSMPIDIYSIDLTKAYQALGQIIGDNQENSLIKELFSKFCLGK 460 >gi|152993155|ref|YP_001358876.1| tRNA modification GTPase TrmE [Sulfurovum sp. NBC37-1] gi|205829171|sp|A6QAL0|MNME_SULNB RecName: Full=tRNA modification GTPase mnmE gi|151425016|dbj|BAF72519.1| tRNA modification GTPase TrmE [Sulfurovum sp. NBC37-1] Length = 450 Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 142/449 (31%), Positives = 243/449 (54%), Gaps = 17/449 (3%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64 + TI A++T S+ISIIR+SG + + + I ++ PR A L + ++D+ Sbjct: 6 QNTIAAIATAYGVSSISIIRVSGNAALDIAKKISHLEEVKPRHAHLTSLYNSQNDLIDQA 65 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 ++I F +P SFTGE+ EF HGG+ V IL+ + +RLA PGEFS+RAF NGKID Sbjct: 66 IMIYFKAPFSFTGEEIVEFQCHGGMIVAQEILDTILSY-GIRLAEPGEFSKRAFFNGKID 124 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L EAE+++ LI +++ ++ + M GEL + D L ++ E +D++EE D+ Sbjct: 125 LTEAEAISKLIEAKSVDAAKILAKQMKGELKYFVDESRDALLRSLAYSEVMIDYAEE-DI 183 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + + ++ + L I + + G+K+ I+G N GKSSL NAL D Sbjct: 184 PDDIMRSIVTQLDGLSEQIMKIVDASYRRRGLIEGFKVAIIGKPNVGKSSLLNALLSYDR 243 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIV+DI GTTRD + + + +++++ DTAGIRE++D +EK GI+R+ VE+AD+I+ Sbjct: 244 AIVSDIAGTTRDTIEEQVRIGSHIIRLVDTAGIRESEDTIEKIGIERSLSSVEDADIIIA 303 Query: 305 L----KEINSKKE-----ISFPKNIDFIFIGTKSDLY----STYTEEYDHLISSFTGEGL 351 L +E +S+ E + ++ I KSDL YD + S +G Sbjct: 304 LFDGSREFDSEDEKILAIVDALQDKHIIVAINKSDLEMKLDGDRINSYDPIEVS-AKKGF 362 Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRL 411 +L +++++L + + + S R + +++ + A + L+ + +L+ Sbjct: 363 VKLTRQMEALLDSIGEGEELMLIS-ARQIEAVNRAKNAIAEAKEPLMNGELEFFSYHLQE 421 Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A ++ I+ D E++LD +F +FC+GK Sbjct: 422 AVKAISSISKPYDSEEILDKMFGEFCLGK 450 >gi|315022654|gb|EFT35679.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Riemerella anatipestifer RA-YM] Length = 490 Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 160/470 (34%), Positives = 257/470 (54%), Gaps = 40/470 (8%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLDGR-I 60 ++++TI A++T AI IIR+SG + + I K K + +L Y F + G + Sbjct: 29 NQQDTICALATANGVGAIGIIRVSGDNSINITNTIFKGKDLTKVDSHTLHYGFIVQGEEV 88 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+ ++ +F +P+SFT EDS E HG + IL+ L R+A GEFS RAF N Sbjct: 89 IDEVMISIFKAPKSFTTEDSVEISFHGSPFIGKRILD-LLIANGCRMAKAGEFSMRAFLN 147 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G+IDL +AES+ADLI+SE+E R++++ + G +S+ + L + S IE +LDF+E Sbjct: 148 GRIDLSQAESIADLIASESEAARKVALNQLKGGISNEISILRNDLLNFTSLIELELDFAE 207 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E DV+ E+ + LK+ + + + G ++NG ++ I+G NAGKS+L NAL Sbjct: 208 E-DVEFADRTELTQLLQKLKSKLGGLLESFQYGNAVKNGVQVAIIGKPNAGKSTLLNALL 266 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 K++ AIV+DI GTTRD + L + G+ + DTAGIR+T D VE G+++ ++ AD Sbjct: 267 KEERAIVSDIAGTTRDTIEEVLHIGGHAFRFIDTAGIRDTADRVESIGVEKAKEKINTAD 326 Query: 301 LILLLKEINSKKEISFPKNIDFIFIGTKSDL----------YSTYTEEYDH-------LI 343 ++L L +I K+ + + I+FI + DL S TE D L+ Sbjct: 327 ILLYLFDI---KDSTPNEIINFITSLERPDLKVILLQNKIDSSNETEINDFWKQLKEVLV 383 Query: 344 SSFTG----------EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ---TVRYL 390 +FT + +E L N++ S + + K +I +++RH L + +V+ + Sbjct: 384 PNFTQTILGISAKEEKNIEILKNELVSYIE-ELKTSESTIITNQRHQEALQKSLLSVQKV 442 Query: 391 EMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E A N +++A LR A LG+I+G +++L IF KFCIGK Sbjct: 443 EEAITNR--ISTELLAYELRAAMEYLGEISGEFTNDEVLGNIFGKFCIGK 490 >gi|237713435|ref|ZP_04543916.1| tRNA modification GTPase TrmE [Bacteroides sp. D1] gi|262407222|ref|ZP_06083770.1| tRNA modification GTPase TrmE [Bacteroides sp. 2_1_22] gi|294647342|ref|ZP_06724935.1| tRNA modification GTPase TrmE [Bacteroides ovatus SD CC 2a] gi|294809037|ref|ZP_06767759.1| tRNA modification GTPase TrmE [Bacteroides xylanisolvens SD CC 1b] gi|229446417|gb|EEO52208.1| tRNA modification GTPase TrmE [Bacteroides sp. D1] gi|262354030|gb|EEZ03122.1| tRNA modification GTPase TrmE [Bacteroides sp. 2_1_22] gi|292637301|gb|EFF55726.1| tRNA modification GTPase TrmE [Bacteroides ovatus SD CC 2a] gi|294443762|gb|EFG12507.1| tRNA modification GTPase TrmE [Bacteroides xylanisolvens SD CC 1b] Length = 465 Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 153/468 (32%), Positives = 250/468 (53%), Gaps = 37/468 (7%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP---FPRKASLRYFFG--LDG- 58 ++TI A++T A AI IR+SGP + I K K + FG DG Sbjct: 3 QDTICAIAT-AQGGAIGSIRVSGPEAISITGSIFKPAKTGKLLSEQKPYTLTFGRIYDGD 61 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 I+D+ L+ +F +P S+TGEDS E HG ++ +++ L K R+A PGE+++RAF Sbjct: 62 EIIDEVLISLFRAPHSYTGEDSTEITCHGSSYILQQVMQLLIK-NGCRMAQPGEYTQRAF 120 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NGK+DL +AE++ADLI+S + RL+M M G S + +KL + S IE +LDF Sbjct: 121 LNGKMDLSQAEAVADLIASSSAATHRLAMSQMRGGFSKELTELRNKLLNFTSMIELELDF 180 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQG-KLGEIIRNGYKIVILGHSNAGKSSLFN 237 SEE DV+ F+ + L + + S ++ +G I+NG + I+G +NAGKS+L N Sbjct: 181 SEE-DVE-FADRSALRKLADEIEQVISRLAHSFSVGNAIKNGVPVAIIGETNAGKSTLLN 238 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 L +D AIV+D+ GTTRDV+ +++ G + DTAGIRET+D +E GI+RTF +++ Sbjct: 239 VLLNEDKAIVSDVHGTTRDVIEDTINIGGITFRFIDTAGIRETNDTIESLGIERTFQKLD 298 Query: 298 NADLIL-LLKEINSKKEIS------FPK--NIDFIFIGTKSDLYSTYTEE-YDHLISSFT 347 A+++L ++ +N+ +I P+ I + K+DL +E L+ F Sbjct: 299 QAEIVLWMVDAVNAASQIEQLSEKIIPRCEGKHLIVVFNKADLIEDKQKENLLSLLKDFP 358 Query: 348 GEGLEEL-INKIKSILSNKFKKLPFS------------IPSHKRHLYHLSQTVRYLEMAS 394 E E + I+ + +++ +K+ I ++ RH L++ + + Sbjct: 359 KESTESIFISAKQRENTSELQKMLIDAAHMPTVTQNDIIVTNVRHYEALNKALEAIHRVQ 418 Query: 395 --LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L+ + G D +++++R + I G V + +L IF FCIGK Sbjct: 419 NGLDSQISG-DFLSQDIRECIFFISDIAGEVTNDMVLQNIFQHFCIGK 465 >gi|104774816|ref|YP_619796.1| tRNA modification GTPase TrmE [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116514945|ref|YP_813851.1| tRNA modification GTPase TrmE [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|122274323|sp|Q047F9|MNME_LACDB RecName: Full=tRNA modification GTPase mnmE gi|123077174|sp|Q1G7Z4|MNME_LACDA RecName: Full=tRNA modification GTPase mnmE gi|103423897|emb|CAI98939.1| tRNA modification GTPase trmE [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116094260|gb|ABJ59413.1| tRNA modification GTPase trmE [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|325126645|gb|ADY85975.1| Thiophene and furan oxidation protein [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 461 Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 155/465 (33%), Positives = 259/465 (55%), Gaps = 38/465 (8%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLD---G 58 E +TI A+ST ISI+R+SG + + K K + P ++ Y +D G Sbjct: 7 EFDTIAAISTPLGEGGISIVRVSGEDAVAIVNRLFKGKDLEKVPSH-TINYGHIVDPATG 65 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 +++D+ + V +P++FT ED E + HGGI V N IL+ L R+A+PGEF++RAF Sbjct: 66 QVIDEVMASVMLAPKTFTKEDIVEINCHGGIVVTNDILQ-LLLANGARMADPGEFTKRAF 124 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFIEA 174 NG+IDL +AES+ D+I ++T+ R+++++ +SG E+ +L + +D L ++ E Sbjct: 125 VNGRIDLTQAESVMDIIRAKTDKARQVAVKQLSGGLLTEIRALRQEILDVLANV----EV 180 Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234 ++D+ E D + +++++L + I + + G+I+RNG K I+G N GKSS Sbjct: 181 NIDYPEY-DEEEVTAQKLLACAEAVSGKIDRLLETAQEGQILRNGLKTAIVGRPNVGKSS 239 Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294 L N L + D AIVTD+ GTTRD L + ++G +++ DTAGI T+D VEK G++R+ Sbjct: 240 LLNYLTQSDKAIVTDVAGTTRDTLEEFVSVKGVPLELIDTAGIHHTEDQVEKIGVERSKK 299 Query: 295 EVENADLILLL----KEIN--SKKEISFPKNIDFIFIGTKSDLYSTYT------EEYDHL 342 + ADLILLL +E+ ++ + I + K+DL T E + Sbjct: 300 AIAQADLILLLLDGSQELTEEDRQLLELTAGKKRIIVLNKTDLGQKLTAAEIAKESGSEV 359 Query: 343 ISS--FTGEGLEELINKIKSILSNKFKKLPFS----IPSHKRHLYHLSQTVRYL-EMASL 395 IS+ E L+EL IK + FK + S + +++R L++ + L ++AS Sbjct: 360 ISTSIMMKENLDELEALIKKLF---FKGIENSNDQVLVTNQRQAGLLAKAKQQLADVASG 416 Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E +D++ + A SLG+ITG ++L++ +FS+FC+GK Sbjct: 417 LEAGMPVDLVQIDFTGAWESLGEITGDSAPDELINDLFSQFCLGK 461 >gi|188590674|ref|YP_001922717.1| tRNA modification GTPase TrmE [Clostridium botulinum E3 str. Alaska E43] gi|188500955|gb|ACD54091.1| tRNA modification GTPase TrmE [Clostridium botulinum E3 str. Alaska E43] Length = 456 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 159/463 (34%), Positives = 260/463 (56%), Gaps = 33/463 (7%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA----SLRYFFGLD- 57 E +TI ++T +SIIR+SG + I K K ++RY ++ Sbjct: 2 REFDTICGIATPIGEGGVSIIRISGSKALDIISKIFVGKNNIDLKQMKTYTMRYGHIIEF 61 Query: 58 --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 ++D+ ++ P S+T ED E + HGG+ N ++ ++ K R+A PGEF++ Sbjct: 62 ESKDVIDEVIISYMKGPHSYTTEDIIEINCHGGVISTNSVMNQVIK-AGARVAEPGEFTK 120 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG+IDL +AE++ D+I ++T++ + ++ G LS + L + + IE Sbjct: 121 RAFLNGRIDLSQAEAVIDIIKAKTDLSMKSALMQSGGALSMQIKEIRQYLLNTLALIEYG 180 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQ-------GKLGEIIRNGYKIVILGHS 228 +DF+E+++ + + +L +K+ I + I + G+IIR+G +VI+G Sbjct: 181 VDFTEDDEDIDDTL------VLRVKDGIKTTILKVRELLKGADEGKIIRDGLNVVIIGKP 234 Query: 229 NAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEG 288 N GKSSL N L K+ AIVTDIPGTTRD++ L+++G +KI+DTAGIRET+D VEK G Sbjct: 235 NVGKSSLLNVLLKEKRAIVTDIPGTTRDIIEEYLNIDGIPIKITDTAGIRETEDTVEKIG 294 Query: 289 IKRTFLEVENADLILLL------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTE-EYDH 341 ++R+ ++E ADLI+L+ E K+ I+ K+ + I + K+DL + + D+ Sbjct: 295 VERSREKIEEADLIILILDSSRDLEEEDKEIINTIKDKNHIVLLNKTDLDRKIADIDLDN 354 Query: 342 L--ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLNE 397 IS+ TG G+EEL NKIK + + I S+ RH L +++ E+A +N Sbjct: 355 QIKISAKTGYGIEELKNKIKELFFSGDINSESLIVSNVRHKQALYRSLENCEVALDRVNA 414 Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + LD+I+ + A +LG+ITG E +L+ IFS+FC+GK Sbjct: 415 NEF-LDLISIYVTSAMKALGEITGDELEEDVLNKIFSEFCVGK 456 >gi|160887320|ref|ZP_02068323.1| hypothetical protein BACOVA_05338 [Bacteroides ovatus ATCC 8483] gi|156107731|gb|EDO09476.1| hypothetical protein BACOVA_05338 [Bacteroides ovatus ATCC 8483] Length = 465 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 153/468 (32%), Positives = 249/468 (53%), Gaps = 37/468 (7%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP---FPRKASLRYFFG--LDG- 58 ++TI A++T A AI IR+SGP + I K K + FG DG Sbjct: 3 QDTICAIAT-AQGGAIGNIRVSGPEAISITGSIFKPAKAGKLLSEQKPYTLTFGRIYDGD 61 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 ++D+ L+ +F +P S+TGEDS E HG ++ +++ L K R+A PGE+++RAF Sbjct: 62 EMIDEVLVSLFRTPHSYTGEDSTEITCHGSTYILQQVMQLLIK-NGCRMAQPGEYTQRAF 120 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NGK+DL +AE++ADLI+S + RL+M M G S +KL + S IE +LDF Sbjct: 121 LNGKMDLSQAEAVADLIASSSAATHRLAMSQMRGGFSKELTDLRNKLLNFTSMIELELDF 180 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQG-KLGEIIRNGYKIVILGHSNAGKSSLFN 237 SEE DV+ F+ + L + + S ++ +G I+NG + I+G +NAGKS+L N Sbjct: 181 SEE-DVE-FADRSALRKLADEIEQVISRLAHSFSVGNAIKNGVPVAIIGETNAGKSTLLN 238 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 L +D AIV+DI GTTRDV+ +++ G + DTAGIRET+D +E GI+RTF +++ Sbjct: 239 VLLNEDKAIVSDIHGTTRDVIEDTVNIGGITFRFIDTAGIRETNDTIESLGIERTFQKLD 298 Query: 298 NADLIL-LLKEINSKKEIS------FPK--NIDFIFIGTKSDLY-STYTEEYDHLISSFT 347 A+++L ++ +N+ +I P+ I + K+DL E+ L+ F Sbjct: 299 QAEIVLWMVDAVNAASQIEQLSEKIIPRCEGKHLIVVFNKADLIEGKQKEDLLSLLKDFP 358 Query: 348 GEGLEEL-INKIKSILSNKFKKLPFS------------IPSHKRHLYHLSQTVRYLEMAS 394 E E + I+ + +++ +K+ I ++ RH L++ + + Sbjct: 359 KESTESIFISAKQRENTSELQKMLIDAAHLPTVTQNDIIVTNVRHYEALNKALEAIHRVQ 418 Query: 395 --LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L+ + G D +++++R + I G V + +L IF FCIGK Sbjct: 419 NGLDSQISG-DFLSQDIRECIFFISDIAGEVTNDMVLQNIFQHFCIGK 465 >gi|320527161|ref|ZP_08028348.1| tRNA modification GTPase TrmE [Solobacterium moorei F0204] gi|320132489|gb|EFW25032.1| tRNA modification GTPase TrmE [Solobacterium moorei F0204] Length = 459 Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 139/431 (32%), Positives = 232/431 (53%), Gaps = 15/431 (3%) Query: 19 AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDG-RILDKGLLIVFPSPESFTG 77 AIS+IR+SG Q+ + K + ++ Y +G +D+ L+ +F +P+S+TG Sbjct: 35 AISVIRISGSDAIQIVTDLTGKDLSDAKGYTIHYATIKEGNESVDEVLVSLFRAPKSYTG 94 Query: 78 EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137 ED E HGG+ + +L L R+A GEF+ RAF +GK+DL +AE + DLI + Sbjct: 95 EDVVEISCHGGVYITRKVLS-LILGAGARMARRGEFTERAFLSGKMDLSQAEGINDLIWA 153 Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197 + E+ + ++ + G ++ L + LT I S IE ++D+ E +DV + +E+L Sbjct: 154 KDEINAKSAIHSLKGSVAKLMRSLEEDLTQIISNIEVNIDYPEYDDVHQLTEEEILPRAE 213 Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257 +DI I + +I+ G VILG N GKSSL NAL ++D AIVTD+ GTTRD+ Sbjct: 214 KWIDDIHQIIVTAQQSAVIKEGINTVILGRPNVGKSSLLNALLEEDKAIVTDVAGTTRDL 273 Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL----KEINSKKE 313 + + L G + + DTAGIR++DD +E+ GI ++ +E A L++++ +E+ + + Sbjct: 274 VEGTVRLSGITLNLIDTAGIRKSDDAIEQIGITKSLQALEKAQLVIVVLDGSEELTEEDQ 333 Query: 314 --ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371 + KN + I + K D S + + S + + EL N I +++ Sbjct: 334 ELLEKTKNYNRIVVYNKKDKDSVHA----GISISAIQKDITELTNAIVEKYQSEYIAANS 389 Query: 372 SIPSHKRHLYHLSQTVRYLEMASLNEKDCG--LDIIAENLRLASVSLGKITGCVDVEQLL 429 +++R + + Q + + A +N G LD++ +L A +L +ITG E LL Sbjct: 390 DTLNNERQIGYALQAEQAMREA-VNALHAGMELDLVTIDLEKAWTALRQITGKAGKEDLL 448 Query: 430 DIIFSKFCIGK 440 D IFS+FC+GK Sbjct: 449 DEIFSRFCLGK 459 >gi|325475103|gb|EGC78289.1| tRNA modification GTPase mnmE [Treponema denticola F0402] Length = 472 Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 165/468 (35%), Positives = 241/468 (51%), Gaps = 38/468 (8%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DGRI 60 + I A++T P+A+ I+R SG + I K K G + Sbjct: 10 DPIAAIATALSPAALGIVRASGKGAIDLASAIFSKPKKLKEAQGNTILHGWVLDPESKKE 69 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+ + V+ P+SFTGEDS EF HGG AVV I L + R A GEF+ RAF N Sbjct: 70 VDEVTVCVYREPKSFTGEDSVEFICHGGTAVVLKIYRLLIEN-GFRAAEGGEFTFRAFAN 128 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GK DL AE++ ++I+S+T++ L+ +SG L S + LT + + + ++++ E Sbjct: 129 GKADLTRAEAVNEIINSKTDINIELAAGRLSGNLFSGIEEIKHGLTAVIAAADVEIEYPE 188 Query: 181 EEDVQN--FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 +E+ FS +L I LK+ S ++ +I G K+V+ G +NAGKSSLFNA Sbjct: 189 DEETSQGAFSPDLILRIIEPLKDLADSWAAE----KIFIQGAKVVLAGKTNAGKSSLFNA 244 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L K+D AIV+DI GTTRD L L+ G V + DTAGIR T D +E G++R+ N Sbjct: 245 LLKEDRAIVSDIHGTTRDWLEASLNFNGIPVSLYDTAGIRYTQDSIEAIGVERSLEMSRN 304 Query: 299 ADLILLL---KEINS-----KKEISFPKNID--FIFIGTKSDLYSTYTEEYDH------- 341 ADLIL L K+I S K++ F KN I + TK DL T ++E Sbjct: 305 ADLILYLCDPKDILSAGSLNKEDSEFIKNAKAPVITVITKEDLLDTESKEKIKEILKAEK 364 Query: 342 -----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPS---HKRHLYHLSQTVRYLEMA 393 +ISS G++ L K S+L+ FS + +R + + + L+ A Sbjct: 365 IAEPIIISSKASNGIKALSEKAYSVLAKNTGSSGFSKTASLGSERQRDAVQKALDVLKTA 424 Query: 394 SLNE-KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 N + LD+I E+L A LG+ITG V + +LD +FS FC+GK Sbjct: 425 YQNSLEGFPLDLIVEDLEEALSFLGEITGEVRSDDILDKVFSGFCVGK 472 >gi|260887478|ref|ZP_05898741.1| tRNA modification GTPase TrmE [Selenomonas sputigena ATCC 35185] gi|330840116|ref|YP_004414696.1| tRNA modification GTPase mnmE [Selenomonas sputigena ATCC 35185] gi|260862765|gb|EEX77265.1| tRNA modification GTPase TrmE [Selenomonas sputigena ATCC 35185] gi|329747880|gb|AEC01237.1| tRNA modification GTPase mnmE [Selenomonas sputigena ATCC 35185] Length = 459 Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 144/460 (31%), Positives = 235/460 (51%), Gaps = 24/460 (5%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL---- 56 + +TI A++T + I+RLSG S + F + + +G Sbjct: 2 QQADTISAIATAVGEGGVGIVRLSGASAIETASRMFCAAGARKLADAGARDLLYGTVVRE 61 Query: 57 DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 DGR++D+ L +V +P S+T ED E HGG + +L L R A GEF++R Sbjct: 62 DGRLVDEALCLVMRAPHSYTKEDVVELQCHGGAVSLREVLA-LTYRHGARAAERGEFTKR 120 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NG++DL EA+++ D++ ++TE ++ ++G S + + + + +EA + Sbjct: 121 AFLNGRLDLAEAQAVMDVVQAKTEKGLEMAAGHLAGHFSERIRSMREDILALLAHLEAVI 180 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 DF EE V +E + L + + G I+R+G + I+G N GKSSL Sbjct: 181 DFPEE-GVDEIVVEEAREKVSALHASLRRIVQTAHTGRILRDGLETAIVGRPNVGKSSLL 239 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 NAL ++D AIVTD+PGTTRD + D+ G ++I DTAGIR T+D VE+ G+++ V Sbjct: 240 NALLREDRAIVTDVPGTTRDTIEEYADIGGVPLRIIDTAGIRTTEDAVERIGVEKARAHV 299 Query: 297 ENADLILLL----KEINSKKE--ISFPKNIDFIFIGTKSDLYSTY-TEEYDHL------- 342 ++A L+L L + + ++ E ++ + D + + TKSDL TE +L Sbjct: 300 KSAALVLALFDGSRPLEAEDEEILALLEGKDALIVVTKSDLPRVLDTERLQNLVHLPLIE 359 Query: 343 ISSFTGEGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDC 400 I++ EG+ L I + + + + S + R L +L A S ++ Sbjct: 360 ITTKEEEGISPLAAAILEKVYDGEERSGEGSFVADLRTKNLLEAAADHLTAAISTMDQGL 419 Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 GLD I+ +LR + LG+ITG + +LD IFS+FC+GK Sbjct: 420 GLDFISIDLRSSLEKLGEITGETVGDDVLDEIFSRFCVGK 459 >gi|282880433|ref|ZP_06289141.1| tRNA modification GTPase TrmE [Prevotella timonensis CRIS 5C-B1] gi|281305704|gb|EFA97756.1| tRNA modification GTPase TrmE [Prevotella timonensis CRIS 5C-B1] Length = 478 Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 155/471 (32%), Positives = 242/471 (51%), Gaps = 45/471 (9%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFG--LDGR--I 60 TI A++T A AI IIR+SG Q+ + F+ K K S +G +D + Sbjct: 16 TICALATPA-GGAIGIIRISGKDAIQIADKVFVTSKHKKLHDAKSHTILYGRIVDSQQET 74 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D L+ VF SP S+TGEDS E HG ++ ILE L K R A PGE+++RAF N Sbjct: 75 IDDVLVSVFRSPHSYTGEDSVEISCHGSRYIIKTILETLIK-EGCRQAAPGEYTQRAFFN 133 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GK+DL +AE++ADLI+S +M + G S+ ++L + S IE +LDFS+ Sbjct: 134 GKLDLSQAEAVADLIASTNRATHHAAMSQLKGNFSNELATLRNELLKMTSLIELELDFSD 193 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 ED++ + E+L +KN I++ + G I+ G + I+G +N GKS+L N L Sbjct: 194 HEDLEFANRDELLALAHKIKNRITTLAHSFETGNAIKQGVPVAIIGKTNVGKSTLLNQLL 253 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++D AIV++I GTTRDV+ ++ G + DTAGIR+T D +E GI+RT+ ++E A Sbjct: 254 EEDKAIVSNIHGTTRDVIEDTTEINGITFRFIDTAGIRKTTDEIENLGIERTYQKIEEAK 313 Query: 301 LILLLK-EINSKKEI----SFPKNIDFIFIGTKSDLYSTYT------------------E 337 ++L L E +K+E+ K+ I I K D+ T T + Sbjct: 314 IVLWLTDEAPTKQEVDDLLKRIKDKSLICIQNKMDISPTPTLSVFENITNQKSNERNAKK 373 Query: 338 EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL-------SQTVRYL 390 + +S+ G ++ L + + + I + RH L S+ + L Sbjct: 374 RFSLQLSAKLGTNMDLLRSTLCQVAEVPEVTENDVIVTSTRHYNALLRSEESISRVIEGL 433 Query: 391 EMASLNEKDCGLDIIAENLRLASVSLGKIT-GCVDVEQLLDIIFSKFCIGK 440 E+ + D+++E+LRL L +IT G + ++L+ IF FCIGK Sbjct: 434 EL------ELSGDLLSEDLRLCLEHLAEITGGLITTHEVLNNIFQHFCIGK 478 >gi|29349959|ref|NP_813462.1| tRNA modification GTPase TrmE [Bacteroides thetaiotaomicron VPI-5482] gi|32171810|sp|Q89Z26|MNME_BACTN RecName: Full=tRNA modification GTPase mnmE gi|29341870|gb|AAO79656.1| putative GTPase, ThdF family [Bacteroides thetaiotaomicron VPI-5482] Length = 465 Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 155/469 (33%), Positives = 246/469 (52%), Gaps = 39/469 (8%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI---- 60 ++TI A++T A AI IR+SGP + I + K + + + GRI Sbjct: 3 QDTICAIAT-AQGGAIGSIRVSGPEAISITSRIFQPAKAGKLLSEQKPYTLTFGRIYNGE 61 Query: 61 --LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 +D+ L+ +F +P S+TGEDS E HG ++ +++ L K R+A PGE+++RAF Sbjct: 62 EVIDEVLVSLFRAPHSYTGEDSTEITCHGSSYILQQVMQLLIK-NGCRMAQPGEYTQRAF 120 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NGK+DL +AE++ADLI+S + RL+M M G S KL + S IE +LDF Sbjct: 121 LNGKMDLSQAEAVADLIASSSAATHRLAMSQMRGGFSKELTDLRSKLLNFTSMIELELDF 180 Query: 179 SEEEDVQNFSSKEVLNDIL-FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 SEE DV+ F+ + L + ++ IS + +G I+NG + I+G +NAGKS+L N Sbjct: 181 SEE-DVE-FADRSALRKLADEIEQVISRLVHSFNVGNAIKNGVPVAIIGETNAGKSTLLN 238 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 L +D AIV+DI GTTRDV+ +++ G + DTAGIRET+D +E GI+RTF +++ Sbjct: 239 VLLNEDKAIVSDIHGTTRDVIEDTINIGGITFRFIDTAGIRETNDTIESLGIERTFQKLD 298 Query: 298 NADLILLL-------KEINSKKEISFPK--NIDFIFIGTKSDLYSTYT-EEYDHLISSFT 347 A+++L + +I E P+ I + K+DL EE L+ +F Sbjct: 299 QAEIVLWMVDSSDASSQIKQLSEKIIPRCEEKQLIVVFNKADLIEEMQKEELSALLKNFP 358 Query: 348 GEGLEELI---------NKIKSILSNKFKKLPFS-----IPSHKRHLYHLSQTVRYLEMA 393 E + + ++++ +L N LP I ++ RH LS+ + + Sbjct: 359 KEYTKSIFISAKERRQTDELQKMLINA-AHLPTVTQNDIIVTNVRHYEALSKALDAIHRV 417 Query: 394 S--LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L+ G D +++++R + I G V + +L IF FCIGK Sbjct: 418 QDGLDSHISG-DFLSQDIRECIFFISDIAGEVTNDMVLQNIFQHFCIGK 465 >gi|227508120|ref|ZP_03938169.1| tRNA modification GTPase TrmE [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227511145|ref|ZP_03941194.1| tRNA modification GTPase TrmE [Lactobacillus buchneri ATCC 11577] gi|227085627|gb|EEI20939.1| tRNA modification GTPase TrmE [Lactobacillus buchneri ATCC 11577] gi|227192349|gb|EEI72416.1| tRNA modification GTPase TrmE [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 464 Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 152/471 (32%), Positives = 248/471 (52%), Gaps = 47/471 (9%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD---G 58 E +TI A+ST ISI+R+SG V + + + K + AS +G +D Sbjct: 7 EFDTIAAISTPPGEGGISIVRISGEEALDVAKNVYRGKN-LDKVASNTINYGHIVDPSTN 65 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 + +D+ +L + +P ++T ED E + HGGI N IL+ L R+A PGEF++RAF Sbjct: 66 QEVDEVMLSIMRAPHTYTKEDIIEINCHGGIVATNRILQ-LVLSNGARMAEPGEFTKRAF 124 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG+IDL ++E++ DLI ++T+ + ++ + G LS L + + + +E ++D+ Sbjct: 125 LNGRIDLSQSEAVMDLIEAKTDRSMKAAISQLDGNLSHLIKHLRKDILDVLAQVEVNIDY 184 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E +DV+ +SK + + I + K G+I+R+G I+G N GKSSL N Sbjct: 185 PEYDDVETMTSKLLREKATDVHKRIVQLLQTAKQGKILRDGLATSIIGRPNVGKSSLLNH 244 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L +D AIVTD+PGTTRDVL ++ G +K+ DTAGIR+T+D VEK G+ R+ + + Sbjct: 245 LLHEDKAIVTDVPGTTRDVLEEYANVSGVPLKLIDTAGIRDTNDKVEKIGVDRSRKAINS 304 Query: 299 ADLIL---------------LLKEINSKKEISFPKNIDFIF---------IGTKSDLYST 334 ADL+L L++ N KK I D + ++ ST Sbjct: 305 ADLVLLVLNASEPLTEEDRQLIEATNKKKRIVVLNKTDLPIKLNLSEIKRLTKAQNIIST 364 Query: 335 YTEEYDHLISSFTGEGLEELINKI---KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391 + D L +GLEELI+ + + I S++ + ++ RH+ L+Q LE Sbjct: 365 SAIKADGL------KGLEELISTMFFNEGIASSQND----VVVTNARHIGLLNQAKSALE 414 Query: 392 --MASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + L+E +D++ ++ LG+ITG ++L+D +FS+FC+GK Sbjct: 415 DVLKGLDEG-MPVDLVQIDMTRCWDFLGEITGDSYQDELIDQLFSQFCLGK 464 >gi|315223865|ref|ZP_07865713.1| tRNA modification GTPase TrmE [Capnocytophaga ochracea F0287] gi|314946195|gb|EFS98196.1| tRNA modification GTPase TrmE [Capnocytophaga ochracea F0287] Length = 472 Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 155/473 (32%), Positives = 258/473 (54%), Gaps = 49/473 (10%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLR------YFFGLDGR 59 +TI A++T + AI++IRLSG + + + K P+ K+ L + L+ + Sbjct: 11 DTIVALATASGIGAIAVIRLSGKEAIAIADSVFK---PYTGKSLLEAPSHTVHLGTLESK 67 Query: 60 --ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKM---PNLRLANPGEFS 114 ++D+ L +F +S+TGE EF HG N I+EE+ K+ RLA+ GEF+ Sbjct: 68 DQVIDECLATIFKGTKSYTGEPVVEFSCHGS----NYIVEEVIKLCLAKGARLADAGEFT 123 Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174 +RAF NGK+ L +AE++ADLI+S+++ +++++ M G +S +L + S IE Sbjct: 124 KRAFLNGKLALNQAEAVADLIASDSKASHQVALQQMRGGFTSEIEGLRQELLNFTSLIEL 183 Query: 175 DLDFSEEEDVQNFSSKEVLNDIL-FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233 +LDFSEE DV+ F+ + +L +K + S + +G +++NG + I+G NAGKS Sbjct: 184 ELDFSEE-DVE-FADRTQFKLLLSTIKTTVLSLLQSFSVGNVLKNGIPVAIVGKPNAGKS 241 Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293 +L NAL ++ AIV+DI GTTRD + L + G + DTAGIR+T D +E G+++ Sbjct: 242 TLLNALLNEERAIVSDIAGTTRDTIEETLHIGGIAFRFIDTAGIRDTQDQIEAIGVQKAK 301 Query: 294 LEVENADLILLL---KEINSKKEISFPK-----NIDFIFIGTKSDLY--STYTEEYDHLI 343 ++E A ++L L K+ ++++ ISF K F+ + K+DL S T + ++ Sbjct: 302 EKIEKASIVLYLFDVKDSSAQEIISFVKENYREGTKFVLLHNKTDLSTESNITPFDNEIL 361 Query: 344 SSFTG-----------EG-----LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV 387 S G EG L++ ++ L+N K + H L++ Q++ Sbjct: 362 QSLKGYTDTLLRISAKEGNNILALKDFLSHYAQSLNNTGKATIITNIRHYEALHNTLQSI 421 Query: 388 RYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +E L + G D++A ++R A LG ITG V +++L IFS+FCIGK Sbjct: 422 ERIEQG-LQLQLSG-DLLAIDIREALYHLGTITGAVSNDEVLGNIFSRFCIGK 472 >gi|284049397|ref|YP_003399736.1| tRNA modification GTPase TrmE [Acidaminococcus fermentans DSM 20731] gi|283953618|gb|ADB48421.1| tRNA modification GTPase TrmE [Acidaminococcus fermentans DSM 20731] Length = 457 Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 140/457 (30%), Positives = 238/457 (52%), Gaps = 25/457 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCE-FICKKKKPFPRKASLRYFFG--LDGR--I 60 +TI A++T +I +IR+SGP + F +++P R+ + + +G LDG+ + Sbjct: 4 DTISAIATALGVGSIGVIRVSGPDSLAIVRRFFAGREQPG-RENARKLLYGHILDGKGQV 62 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+ L + P P S+TGED E HGG + IL L R A PGEF++RAF N Sbjct: 63 VDEVLAVYMPGPHSYTGEDVCEIQCHGGREALQEILR-LTFQAGARPAEPGEFTKRAFLN 121 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G++DL EAES+ D+I++ + + G G LS L + +EA +D+ E Sbjct: 122 GRLDLAEAESVMDIINARSRQALAAANRGHEGGLSRQVKALRKTLRDLVVQLEACIDYPE 181 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 + D++ + ++ + K + + + +G G I+R G + I+G N GKSSL N+L Sbjct: 182 D-DIEEVTYDRTVSTLEEGKKAVETLVRRGTAGRILREGLRTAIVGRPNVGKSSLLNSLL 240 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 + D AIV++IPGTTRD++ + + G + ++DTAG+R+T D+VEK G++R+ +E+A Sbjct: 241 QADRAIVSNIPGTTRDIIEEQMTIGGIPLVLTDTAGLRDTSDLVEKIGVERSRAALEDAQ 300 Query: 301 LIL---------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISS 345 L L LL+ + +K++ D L TY E+ ++S Sbjct: 301 LALVVLDGSQPLDPEDRQLLESLRDRKKLILVNKADLPLALDVEGLRKTYGEKDVLVLSV 360 Query: 346 FTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGLD 403 G+GLE++ ++ + S+ + R L + ++ LE A + D Sbjct: 361 KEGKGLEQVEQWLRDFVYGEGSDSESSSMTQNARQQNLLEKALQSLEDALAGARQHLPYD 420 Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + +L A LG+ITG ++++D IF++FC+GK Sbjct: 421 CLTIDLTQALHDLGEITGEDVPDEIIDEIFAQFCVGK 457 >gi|299148912|ref|ZP_07041974.1| tRNA modification GTPase TrmE [Bacteroides sp. 3_1_23] gi|298513673|gb|EFI37560.1| tRNA modification GTPase TrmE [Bacteroides sp. 3_1_23] Length = 465 Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 153/468 (32%), Positives = 249/468 (53%), Gaps = 37/468 (7%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP---FPRKASLRYFFG--LDG- 58 ++TI A++T A AI IR+SGP + I K K + FG DG Sbjct: 3 QDTICAIAT-AQGGAIGSIRVSGPEAISITGSIFKPAKAGKLLSEQKPYTLTFGRIYDGD 61 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 ++D+ L+ +F +P S+TGEDS E HG ++ +++ L K R+A PGE+++RAF Sbjct: 62 EMIDEVLVSLFRAPHSYTGEDSTEITCHGSTYILQQVMQLLIK-NGCRMAQPGEYTQRAF 120 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NGK+DL +AE++ADLI+S + RL+M M G S +KL + S IE +LDF Sbjct: 121 LNGKMDLSQAEAVADLIASSSAATHRLAMSQMRGGFSKELTDLRNKLLNFTSMIELELDF 180 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQG-KLGEIIRNGYKIVILGHSNAGKSSLFN 237 SEE DV+ F+ + L + + S ++ +G I+NG + I+G +NAGKS+L N Sbjct: 181 SEE-DVE-FADRSALRKLADEIEQVISRLAHSFSVGNAIKNGVPVAIIGETNAGKSTLLN 238 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 L +D AIV+DI GTTRDV+ +++ G + DTAGIRET+D +E GI+RTF +++ Sbjct: 239 VLLNEDKAIVSDIHGTTRDVIEDTVNIGGITFRFIDTAGIRETNDTIESLGIERTFQKLD 298 Query: 298 NADLIL-LLKEINSKKEIS------FPK--NIDFIFIGTKSDLYSTYTEE-YDHLISSFT 347 A+++L ++ +N+ +I P+ I + K+DL +E L+ F Sbjct: 299 QAEIVLWMVDAVNAASQIEQLSEKIIPRCEGKHLIVVFNKTDLIEDKQKENVLSLLKDFP 358 Query: 348 GEGLEEL-INKIKSILSNKFKKLPFS------------IPSHKRHLYHLSQTVRYLEMAS 394 E E + I+ + +++ +K+ I ++ RH L++ + + Sbjct: 359 KESTESIFISAKQRKNTSELQKMLIDAAHLPTVTQNDIIVTNVRHYEALNKALEAIHRVQ 418 Query: 395 --LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L+ + G D +++++R + I G V + +L IF FCIGK Sbjct: 419 NGLDSQISG-DFLSQDIRECIFFISDIAGEVTNDMVLQNIFQHFCIGK 465 >gi|315284189|ref|ZP_07872091.1| tRNA modification GTPase TrmE [Listeria marthii FSL S4-120] gi|313612167|gb|EFR86407.1| tRNA modification GTPase TrmE [Listeria marthii FSL S4-120] Length = 425 Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 135/409 (33%), Positives = 225/409 (55%), Gaps = 21/409 (5%) Query: 52 YFFGL---DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLA 108 Y F L DG ++++ + V +P +FT ED E + HGGI VN +L+ L + LA Sbjct: 18 YTFELKDEDGEVIEEVMATVMRAPRTFTREDVVEINAHGGIVSVNRVLQLLLR-NGANLA 76 Query: 109 NPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHI 168 PGEF++RAF NG+IDL +AE++ DLI ++T+ +++ M G LS L ++ Sbjct: 77 EPGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMGVAIRQMDGNLSRLIRNLRQEILDA 136 Query: 169 RSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHS 228 + +E ++D+ E +DV+ + + +L ++ + + G+I+R G I+G Sbjct: 137 LAQVEVNIDYPEYDDVEEMTQRMLLEKTELVRASVEQLLQTASQGKILREGLATAIIGRP 196 Query: 229 NAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEG 288 N GKSSL N L +++ AIVTDI GTTRD++ +++ G +++ DTAGIRET+DIVEK G Sbjct: 197 NVGKSSLLNQLIQEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETEDIVEKIG 256 Query: 289 IKRTFLEVENADLILLL----KEINSKKEISFPKNI--DFIFIGTKSDLYSTYTEEYDHL 342 ++R+ + +AD ILL+ +E+ ++ E F +++ + K+DL + E Sbjct: 257 VERSRKALADADFILLVLNQNEELTAEDEALFEAAAGHNYVVVLNKTDLETKLDIEKVRE 316 Query: 343 I---------SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM 392 I S EGLE L IK++ + + S+ RH+ L Q + L Sbjct: 317 IAGENPIVATSLVNDEGLEALEEAIKTLFFAGDIDAGDATYVSNVRHIALLHQALDALNA 376 Query: 393 ASLN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + + +DI+ ++ A LG+ITG ++LLD +F++FC+GK Sbjct: 377 VTTGIQLGMPVDIVQIDMTRAWDLLGEITGDSVQDELLDQLFNQFCLGK 425 >gi|293370767|ref|ZP_06617313.1| tRNA modification GTPase TrmE [Bacteroides ovatus SD CMC 3f] gi|292634127|gb|EFF52670.1| tRNA modification GTPase TrmE [Bacteroides ovatus SD CMC 3f] Length = 473 Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 152/468 (32%), Positives = 248/468 (52%), Gaps = 37/468 (7%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64 ++TI A++T A AI IR+SGP + I K K + + + GRI D+ Sbjct: 11 QDTICAIAT-AQGGAIGSIRVSGPEAISITGSIFKPAKAGKLLSEQKPYTLTFGRIYDED 69 Query: 65 LLI------VFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 +I +F +P S+TGEDS E HG ++ +++ L K R+A PGE+++RAF Sbjct: 70 EMIDEVLVSLFRAPHSYTGEDSTEITCHGSTYILQQVMQLLIK-NGCRMAQPGEYTQRAF 128 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NGK+DL +AE++ADLI+S + RL+M M G S +KL + S IE +LDF Sbjct: 129 LNGKMDLSQAEAVADLIASSSAATHRLAMSQMRGGFSKELTDLRNKLLNFTSMIELELDF 188 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQG-KLGEIIRNGYKIVILGHSNAGKSSLFN 237 SEE DV+ F+ + L + + S ++ +G I+NG + I+G +NAGKS+L N Sbjct: 189 SEE-DVE-FADRSALRKLADEIEQVISRLAHSFSVGNAIKNGVPVAIIGETNAGKSTLLN 246 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 L +D AIV+DI GTTRDV+ +++ G + DTAGIRET+D +E GI+RTF +++ Sbjct: 247 VLLNEDKAIVSDIHGTTRDVIEDTVNIGGITFRFIDTAGIRETNDTIESLGIERTFQKLD 306 Query: 298 NADLIL-LLKEINSKKEIS------FPK--NIDFIFIGTKSDLYSTYTEE-YDHLISSFT 347 A+++L ++ +N+ +I P+ I + K+DL +E L+ F Sbjct: 307 QAEIVLWMVDAVNAASQIEQLSEKIIPRCEGKHLIVVFNKADLIEDKQKENVLSLLKDFP 366 Query: 348 GEGLEEL-INKIKSILSNKFKKLPFS------------IPSHKRHLYHLSQTVRYLEMAS 394 E E + I+ + +++ +K+ I ++ RH L++ + + Sbjct: 367 KESTESIFISAKQRKNTSELQKMLIDAAHLPTVTQNDIIVTNVRHYEALNKALEAIHRVQ 426 Query: 395 --LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L+ + G D +++++R + I G V + +L IF FCIGK Sbjct: 427 NGLDSQISG-DFLSQDIRECIFFISDIAGEVTNDMVLQNIFQHFCIGK 473 >gi|83771674|dbj|BAE61804.1| unnamed protein product [Aspergillus oryzae] Length = 555 Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 113/298 (37%), Positives = 173/298 (58%), Gaps = 23/298 (7%) Query: 31 FQVCEFICKKKK-PFPRKASLRYFFGL-----DGRILDKGLLIV-FPSPESFTGEDSAEF 83 +Q+ + +C K P PR A++R F LD G L++ FP+P + TGED E Sbjct: 23 YQIYQALCPKAALPRPRFAAVRTLFDPTREPSSSSALDAGALVLYFPAPNTVTGEDVLEL 82 Query: 84 HVHGGIAVVNGILEELAKMPN----LRLANPGEFSRRAFENGKIDLLEAESLADLISSET 139 H+HGG A+V +L ++++ +R A PGEF+RRAF N ++DL + E+L D +S++T Sbjct: 83 HLHGGPAIVKSVLTAISRVSQPDSLVRYAEPGEFTRRAFMNNRLDLPQIEALGDTLSADT 142 Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN---DI 196 E QRRL++ G S LS Y QW +L + R +EA +DF+E++ S + VL+ + Sbjct: 143 EQQRRLAVRGASDALSRRYEQWRQQLLYARGELEALIDFAEDQHFDESSDELVLSVAAQV 202 Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 L+ + HI GE++R+G KI +LG NAGKSSL N + K+ AIV+ GTTRD Sbjct: 203 QALRVQVGFHIQNASKGELLRHGIKIALLGAPNAGKSSLLNQIVGKEAAIVSTEEGTTRD 262 Query: 257 VLTIDLDLEGYLVKISDTAGIRETD---------DIVEKEGIKRTFLEVENADLILLL 305 ++ + +DL G+ K+ D AGIR VEKEGI+R +D+++++ Sbjct: 263 IVDVGVDLSGWYCKLGDMAGIRSEPVNGKESVVIGAVEKEGIRRAKARALESDVVIVV 320 >gi|238917975|ref|YP_002931492.1| tRNA modification GTPase [Eubacterium eligens ATCC 27750] gi|238873335|gb|ACR73045.1| tRNA modification GTPase [Eubacterium eligens ATCC 27750] Length = 459 Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 153/459 (33%), Positives = 243/459 (52%), Gaps = 26/459 (5%) Query: 5 KETIFAVSTGALPSA-ISIIRLSGPSCFQVCEFICKKKK--PFPRKASLRYFFGL---DG 58 ++TI A+ST + S ISI+R+SGP + + + K KK S FG +G Sbjct: 4 EDTIAAISTSTVSSGGISIVRISGPDAIIIGDKVFKSKKNIKLANVQSHTVHFGNICDNG 63 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 +D+ L+IV SP ++T E+ E HGGI V +LE + RLA PGEF++RAF Sbjct: 64 NEIDEALVIVMKSPNTYTKENIVEIDCHGGILVTKKVLEAVLN-AGARLAEPGEFTKRAF 122 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG+IDL +AE++ D+I+++ + + S+ + G+LS + + + +FIEA LD Sbjct: 123 LNGRIDLSQAEAVIDIINAKNDYALKSSVNQLDGKLSEKIKNIREIILNNVAFIEAALDD 182 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E D+ + + + ND+ N++ + + G I+ +G + VILG +NAGKSSL N Sbjct: 183 PEHFDI-DANVNNLKNDVENCLNNVDNLLKTCDNGRIMHDGVRTVILGKTNAGKSSLLNV 241 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 LA+++ AIVTDI GTTRD L ++L G + + DTAGIR+TDD+VE G+ + E Sbjct: 242 LAREERAIVTDIEGTTRDTLEEMINLSGVTLNLIDTAGIRKTDDVVESIGVNKAKKLAEV 301 Query: 299 ADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEE--------YDHLIS 344 ADL++ + + N + + K+ + I K+DL T E IS Sbjct: 302 ADLVIYVVDSSRSLDDNDYEIMELIKDKKVLVILNKADLAQVTTAEDIKKIINCETVTIS 361 Query: 345 SFTGEGLEELINKIKSILSN---KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401 + G+EEL +K++ N KF + + + + L ++ L + ++ Sbjct: 362 AKQETGIEELEETVKNMFFNGEVKFNEDVYITSTRHKELLKKAENSLKLVLDGIDNM-VS 420 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D + +L A +LG I G + L + IFSKFC+GK Sbjct: 421 EDFLTIDLMAAYENLGLIIGEEIEDDLANRIFSKFCMGK 459 >gi|298482641|ref|ZP_07000825.1| tRNA modification GTPase TrmE [Bacteroides sp. D22] gi|298271104|gb|EFI12681.1| tRNA modification GTPase TrmE [Bacteroides sp. D22] Length = 465 Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 152/468 (32%), Positives = 248/468 (52%), Gaps = 37/468 (7%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64 ++TI A++T A AI IR+SGP + I K K + + + GRI D+ Sbjct: 3 QDTICAIAT-AQGGAIGSIRVSGPEAISITGSIFKPAKAGKLLSEQKPYTLTFGRIYDED 61 Query: 65 LLI------VFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 +I +F +P S+TGEDS E HG ++ +++ L K R+A PGE+++RAF Sbjct: 62 EMIDEVLVSLFRAPHSYTGEDSTEITCHGSTYILQQVMQLLIK-NGCRMAQPGEYTQRAF 120 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NGK+DL +AE++ADLI+S + RL+M M G S +KL + S IE +LDF Sbjct: 121 LNGKMDLSQAEAVADLIASSSAATHRLAMSQMRGGFSKELTDLRNKLLNFTSMIELELDF 180 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQG-KLGEIIRNGYKIVILGHSNAGKSSLFN 237 SEE DV+ F+ + L + + S ++ +G I+NG + I+G +NAGKS+L N Sbjct: 181 SEE-DVE-FADRSALRKLADEIEQVISRLAHSFSVGNAIKNGVPVAIIGETNAGKSTLLN 238 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 L +D AIV+DI GTTRDV+ +++ G + DTAGIRET+D +E GI+RTF +++ Sbjct: 239 VLLNEDKAIVSDIHGTTRDVIEDTVNIGGITFRFIDTAGIRETNDTIESLGIERTFQKLD 298 Query: 298 NADLIL-LLKEINSKKEIS------FPK--NIDFIFIGTKSDLYSTYTEE-YDHLISSFT 347 A+++L ++ +N+ +I P+ I + K+DL +E L+ F Sbjct: 299 QAEIVLWMVDAVNAASQIEQLSEKIIPRCEGKHLIVVFNKADLIEDKQKENVLSLLKDFP 358 Query: 348 GEGLEEL-INKIKSILSNKFKKLPFS------------IPSHKRHLYHLSQTVRYLEMAS 394 E E + I+ + +++ +K+ I ++ RH L++ + + Sbjct: 359 KESTESIFISAKQRKNTSELQKMLIDAAHLPTVTQNDIIVTNVRHYEALNKALEAIHRVQ 418 Query: 395 --LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L+ + G D +++++R + I G V + +L IF FCIGK Sbjct: 419 NGLDSQISG-DFLSQDIRECIFFISDIAGEVTNDMVLQNIFQHFCIGK 465 >gi|289450403|ref|YP_003475559.1| tRNA modification GTPase TrmE [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184950|gb|ADC91375.1| tRNA modification GTPase TrmE [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 484 Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 147/483 (30%), Positives = 247/483 (51%), Gaps = 50/483 (10%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC--------KKKKPFPRKASLRYFFGLD 57 +T A +T A + ++++RLSG + Q+ + + + F ++R G Sbjct: 4 DTCVAYATPAGQAGLAVLRLSGGTAAQIADHVFYPGSWPAKNDRSAFSSLTTVRRMRGYT 63 Query: 58 GRI-----------LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLR 106 R +D+ +L F +P S+TGED E +HGG AV N +L+ + K R Sbjct: 64 CRFGHVFDPEELKPIDEAVLTRFVAPRSYTGEDVVEISIHGGQAVRNALLQAVVKA-GAR 122 Query: 107 LANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLT 166 LA PGEF+RRAF NGK+DL +AE++ DLI++E + + ++ + G+LSS + + L Sbjct: 123 LAEPGEFTRRAFLNGKLDLAQAEAVMDLINAEADSRAEAALGQLQGKLSSYIHEIREPLL 182 Query: 167 HIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILG 226 + +E + + E E+ S + + DI + + ++ G +IR+G +++ G Sbjct: 183 STMAKLELAIQYPEHEE-SVISPESLRKDIETATEKLIALVATYHDGRVIRDGLCVLLAG 241 Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEK 286 N+GKS+L N L+ D AIVTDIPGTTRD + ++L G+ + + DTAG+R T D VE+ Sbjct: 242 RPNSGKSTLLNTLSGYDRAIVTDIPGTTRDTIEERINLSGHAITVIDTAGLRATTDTVER 301 Query: 287 EGIKRTFLEVENADLILLLKEINSKK------EI-SFPKNIDFIFIGTKSDLYST----- 334 G+ R+ ++ ADLIL L +SK E+ +F N + + +K+DL + Sbjct: 302 LGVDRSLKAMQKADLILWLFPSDSKSLSEDLAELKNFSGNAPILPLISKADLLNPSDLPR 361 Query: 335 YTE----EYDH-----------LISSFTGEGLEELINKIKSILSNKFKKLPFS--IPSHK 377 Y E E H +S G+E+LI +I + SN + L + + + Sbjct: 362 YLENLRIEATHAAIGLEFLPPIAVSGLDKSGIEQLIKQIIKLFSNGERILHSDGVLLTAE 421 Query: 378 RHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFC 437 RH + + + N + LDII+ L+ + +L +ITG +++ IF+ FC Sbjct: 422 RHFLIVKKATELMCDLKRNLTELPLDIISLMLQNIAETLAEITGENVTDEVWREIFANFC 481 Query: 438 IGK 440 +GK Sbjct: 482 VGK 484 >gi|218134368|ref|ZP_03463172.1| hypothetical protein BACPEC_02262 [Bacteroides pectinophilus ATCC 43243] gi|217989753|gb|EEC55764.1| hypothetical protein BACPEC_02262 [Bacteroides pectinophilus ATCC 43243] Length = 463 Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 145/407 (35%), Positives = 222/407 (54%), Gaps = 32/407 (7%) Query: 57 DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 D ++LD+ L+ V +P ++T ED AE + HGGI V IL+ + R A PGEF++R Sbjct: 66 DDKVLDEVLVSVMKAPNTYTREDVAEINCHGGILVTRKILDAVID-AGARPAEPGEFTKR 124 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR------- 169 AF NG+IDL +AES+ D+I+S+ E +S + L G+ +++T IR Sbjct: 125 AFLNGRIDLTQAESVIDIINSQNEY-------ALSSSVMQLRGKLSEEITRIREIILDNT 177 Query: 170 SFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSN 229 +FIEA LD E + + K + D+ + + S + G I+++G + VILG +N Sbjct: 178 AFIEAALDDPEHYTLDGYGDK-LAEDVDKCVDKLDSLLKTSDNGRILKDGIRTVILGKTN 236 Query: 230 AGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGI 289 AGKSSL NALA +D AIVTDI GTTRD L + L+G ++ ++DTAGIR+T+DIVEK GI Sbjct: 237 AGKSSLLNALAGEDRAIVTDIAGTTRDTLEESISLDGVILNLTDTAGIRDTEDIVEKIGI 296 Query: 290 KRTFLEVENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH-- 341 ++ NADLI+ + + N KK + F K I + K+D+ + + E Sbjct: 297 EKAMKCAGNADLIIYVADATRNLDDNDKKILDFVKGRHVIVLLNKTDVENVLSVEQMRAH 356 Query: 342 ------LISSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS 394 IS+ G+ EL + I+ + + + ++ RH L +++ L++ Sbjct: 357 TDFPVLAISAREQTGIRELSDTIRQMFFAGQISSNDQIYITNARHKNMLKESINSLKLVK 416 Query: 395 LN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + E D +L A SLGKI G + L++ IFSKFC+GK Sbjct: 417 ESIENGMPEDCYTIDLLNAYESLGKIIGQAVEDDLVNQIFSKFCMGK 463 >gi|227523332|ref|ZP_03953381.1| tRNA modification GTPase TrmE [Lactobacillus hilgardii ATCC 8290] gi|227089523|gb|EEI24835.1| tRNA modification GTPase TrmE [Lactobacillus hilgardii ATCC 8290] Length = 464 Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 152/471 (32%), Positives = 247/471 (52%), Gaps = 47/471 (9%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD---G 58 E +TI A+ST ISI+R+SG V + + + K + AS +G +D Sbjct: 7 EFDTIAAISTPPGEGGISIVRISGEEALDVAKNVYRGKN-LDKVASNTINYGHIVDPSTN 65 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 + +D+ +L + +P ++T ED E + HGGI N IL+ L R+A PGEF++RAF Sbjct: 66 QEVDEVMLSIMRAPHTYTKEDIIEINCHGGIVATNRILQ-LVLSNGARMAEPGEFTKRAF 124 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG+IDL ++E++ DLI ++T+ + ++ + G LS L + + + +E ++D+ Sbjct: 125 LNGRIDLSQSEAVMDLIEAKTDRSMKAAISQLDGNLSHLIKHLRKDILDVLAQVEVNIDY 184 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E +DV+ +SK + + I + K G+I+R+G I+G N GKSSL N Sbjct: 185 PEYDDVETMTSKLLREKATDVHKRIVQLLQTAKQGKILRDGLATSIIGRPNVGKSSLLNH 244 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L +D AIVTD+PGTTRDVL ++ G +K+ DTAGIR+T+D VEK G+ R+ + + Sbjct: 245 LLHEDKAIVTDVPGTTRDVLEEYANVSGVPLKLIDTAGIRDTNDKVEKIGVDRSRKAINS 304 Query: 299 ADLIL---------------LLKEINSKKEISFPKNIDFIF---------IGTKSDLYST 334 ADL+L L+ N KK I D + ++ ST Sbjct: 305 ADLVLLVLNASEPLTEEDRQLIDATNKKKRIVVLNKTDLPIKLNLSEIKRLTKAQNIIST 364 Query: 335 YTEEYDHLISSFTGEGLEELINKI---KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391 + D L +GLEELI+ + + I S++ + ++ RH+ L+Q LE Sbjct: 365 SAIKADGL------KGLEELISTMFFNEGIASSQND----VVVTNARHIGLLNQAKSALE 414 Query: 392 --MASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + L+E +D++ ++ LG+ITG ++L+D +FS+FC+GK Sbjct: 415 DVLKGLDEG-MPVDLVQIDMTRCWDFLGEITGDSYQDELIDQLFSQFCLGK 464 >gi|1524359|emb|CAA66716.1| GTPase [Synechocystis sp. PCC 6803] Length = 456 Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 146/464 (31%), Positives = 241/464 (51%), Gaps = 39/464 (8%) Query: 5 KETIFAVSTGALPS--AISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFG----- 55 ++TI ++T +P +I ++RLSGP + + F + + S R +G Sbjct: 4 EDTIARIATAIVPQQGSIGVVRLSGPQSLTIAKTLFDAPGNQTW---ESHRILYGHVRHP 60 Query: 56 LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 +D+ LL++ +P S+T ED EF HGGI + + +L RLA PGEFS Sbjct: 61 QTKAAIDEALLLLMLAPRSYTKEDVVEFQCHGGI-MPVQQVLQLCLQQGARLAQPGEFSF 119 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG++DL +AES ++L+ +++ +++ G+ G+L+ + I + +EA Sbjct: 120 RAFLNGRLDLTQAESHSELVGAQSPQAGAIALAGLQGKLAQPIRDLRNTCLDILAEVEAR 179 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +DF E+D+ + + L + ++ + GE++R G K+ I+G N GKSSL Sbjct: 180 IDF--EDDLPPLDEDSIRQQLQNLYQQLEDILNTAQAGELLRTGLKVAIVGQPNVGKSSL 237 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 NA ++ D AIVTD+PGTTRDV+ L +EG +++ DTAGIRET D VE+ G++R+ Sbjct: 238 LNAWSRTDRAIVTDLPGTTRDVVESQLVVEGIPIQVLDTAGIRETADQVEQIGVERSRKA 297 Query: 296 VENADLILLL---------------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD 340 + ADL+LL +++ + I ID ++DL S E + Sbjct: 298 AQQADLVLLTVDAHQGWTEADQLIYEQVKDRPLILVINKIDL----GRADLVSYPPEITN 353 Query: 341 HLISSFTGE-GLEELINKIKSILSN---KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396 ++++ G+E L N I ++ + L F+I + + +Q ++ Sbjct: 354 TVLTAAAANLGIEALENAIIEQVNQTNLSPQNLDFAINQRQEAVLTEAQLALKQLQQTMA 413 Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E+ LD +LRLA +LG++TG E +LD IFS+FCIGK Sbjct: 414 EQ-LPLDFWTIDLRLAMNALGEVTGETVTESVLDRIFSRFCIGK 456 >gi|169351641|ref|ZP_02868579.1| hypothetical protein CLOSPI_02422 [Clostridium spiroforme DSM 1552] gi|169291863|gb|EDS73996.1| hypothetical protein CLOSPI_02422 [Clostridium spiroforme DSM 1552] Length = 444 Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 144/453 (31%), Positives = 241/453 (53%), Gaps = 34/453 (7%) Query: 8 IFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD-GRILDKGLL 66 I AV+T L +AISIIR+SGP + K ++ Y + +D G+ +D+ L+ Sbjct: 6 IVAVATSRLEAAISIIRISGPESIAFVQKFFTGKIIDKESHTINYGYIIDDGKRIDEVLV 65 Query: 67 IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126 ++ ++FTGE+ E + HGG+ + +LE K R+A GEFS+RAF NG+IDL Sbjct: 66 NIYRGKKTFTGEEMVEINCHGGVYITKRVLEVCIK-NGARIAERGEFSKRAFLNGRIDLS 124 Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186 +AE+++D+IS++ L++ G+ G +S+ + L I + IE ++D+ E +DV+ Sbjct: 125 QAEAISDIISAKNSYASELALNGIRGNISNFIEDLKEDLIKIITQIEVNIDYPEYDDVEE 184 Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246 ++ +L + L ++ ++ K ++++ G K VI+G N GKSSL NAL +++ AI Sbjct: 185 LTATSLLPESKVLLEKMNKILNDSKNIKLVKEGIKTVIIGKPNVGKSSLLNALLQEEKAI 244 Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL-- 304 VT+I GTTRD++ + ++G ++ + DTAGIRETDDI+E G++++ + ADL+LL Sbjct: 245 VTNIAGTTRDIVEGSISIDGIVLNMIDTAGIRETDDIIESMGVEKSKELINQADLVLLVI 304 Query: 305 ---LKEINSKKE-ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKS 360 LK +E + + + I + K+D D ++ S + L NK+K Sbjct: 305 DGSLKLDQGDQELLELTNDSNRIIVLNKAD--QGIKVNLDGVVISAKDSDIGALTNKVKE 362 Query: 361 -------------ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAE 407 IL+N + + S L+Q V ++M D+I Sbjct: 363 MFELGKIIDNNDHILTNARQTMLLQKASQ-----ALNQAVEAMKML------VPTDLIVT 411 Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +L +L +I G E LLD +F +FCIGK Sbjct: 412 DLYECWNNLKEILGEKAKEDLLDELFKRFCIGK 444 >gi|163788828|ref|ZP_02183273.1| tRNA modification GTPase [Flavobacteriales bacterium ALC-1] gi|159876065|gb|EDP70124.1| tRNA modification GTPase [Flavobacteriales bacterium ALC-1] Length = 461 Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 154/465 (33%), Positives = 247/465 (53%), Gaps = 37/465 (7%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFG--LDGR-I 60 +TI A++T + AI++IRLSG + F K +++ G +D + Sbjct: 4 DTIVALATPSGSGAIAVIRLSGSEAITIASKCFKSVTNKDLKEQSTHTIHLGHIMDAKKT 63 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+ LL VF +P S+TGED E HG + I++ L R+A GEF+ RAF N Sbjct: 64 VDEVLLSVFKNPNSYTGEDVIEISCHGSSYIQQEIIQ-LFLRQGCRMATAGEFTLRAFLN 122 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GK+DL +AE++ADLISS+ E +++M+ M G SS + ++L + S IE +LDF+E Sbjct: 123 GKLDLSQAEAVADLISSDNEASHQIAMQQMRGGFSSEIAKLREELLNFASLIELELDFAE 182 Query: 181 EE----DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 E+ D F K+++ I F+ + I +G +I+NG + I+G N GKS+L Sbjct: 183 EDVEFADRTQF--KQLIERINFV---LKRLIDSFAVGNVIKNGIPVAIVGEPNVGKSTLL 237 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 NAL +D AIV++I GTTRD + ++ + G + DTAGIRET D+VE GIK+TF ++ Sbjct: 238 NALLNEDRAIVSEIAGTTRDTIEDEISIGGIGFRFIDTAGIRETKDVVESIGIKKTFEKI 297 Query: 297 ENADLILLL--KEINS-----------KKEISFPKNIDFIFIGTKSD-LYSTYTEEYDH- 341 E + + + L + NS K +P+ + I K D L E + Sbjct: 298 EQSQVTIYLFDAQKNSDNLEAVRIEVEKIRNKYPQK-PLLVIANKIDALDDLQLAEINRT 356 Query: 342 -----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396 L+S+ TG G+E+L + + ++++ + +I ++ RH L + ++ Sbjct: 357 IADVLLLSAKTGFGVEQLTSSLLNLINTGALRNNETIVTNSRHYDALLKAFEEIQKVQHG 416 Query: 397 -EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E D++A ++R A G+ITG + + LL IF+ FCIGK Sbjct: 417 LETGLSGDLLAIDIRQALYHFGEITGEITNDDLLGNIFANFCIGK 461 >gi|167748063|ref|ZP_02420190.1| hypothetical protein ANACAC_02807 [Anaerostipes caccae DSM 14662] gi|167652055|gb|EDR96184.1| hypothetical protein ANACAC_02807 [Anaerostipes caccae DSM 14662] Length = 472 Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 151/458 (32%), Positives = 246/458 (53%), Gaps = 27/458 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFG---LDGRI 60 +TI A++T S I IIR+SGP + F K++K + A+ +G DG+ Sbjct: 19 DTIAAIATPLSSSGIGIIRISGPEAIDIASEVFRPKREKDIKKAATYTAHYGHAVKDGKD 78 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+ +L++ P S+T ED AE + HGG+ V+ IL + + R A PGEF++RAF N Sbjct: 79 IDECILLIMKGPHSYTAEDVAEINCHGGVVVMKKILSCIIE-AGARPAEPGEFTKRAFLN 137 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G+IDL AE++ DLI S+ E S++ + G LS ++ H +FIE+ LD E Sbjct: 138 GRIDLSRAEAVMDLIHSKNEFAMETSLKQLKGSLSEKIRSLRKEIVHSVAFIESALDDPE 197 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 V FS +++ + ++DI ++ G I++ G I+G NAGKSS+ N L Sbjct: 198 HYSVDGFS-EQLKVQVEHARDDIQKYLDSSDNGRILKEGIHTAIVGKPNAGKSSILNVLL 256 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRD L + + G + + DTAGIR+TDD+VEK G+ + V AD Sbjct: 257 GEERAIVTDIAGTTRDTLEESIQINGIPLNVIDTAGIRDTDDVVEKIGVDKARDSVIKAD 316 Query: 301 LILLLKEIN---SKKEISFPKNID---FIFIGTKSDLYSTYTEE------YDHL--ISSF 346 L+L + + + +K++ K ++ I + KSDL + +E + ++ +S+ Sbjct: 317 LVLYVVDTSVPLTKEDEEIMKLLNGKQVIVLLNKSDLETKVSESEFLDRGFQNIVPVSAK 376 Query: 347 TGEGLEELINKIKSILSNKFKKLPFS---IPSHKRHLYHLSQTVRYLEMASLNEKD-CGL 402 + GLE+L +I + N ++ F+ ++ RH L+ L++ + +D Sbjct: 377 SLYGLEDLYERINDLFFN--GRVSFNDEVYITNMRHKKALANAKDSLDLVLKSIEDRMPE 434 Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D + +L A LG I G E L++ IF++FC+GK Sbjct: 435 DFFSIDLMDAYEELGYIIGESVGEDLVNEIFAEFCMGK 472 >gi|295087115|emb|CBK68638.1| tRNA modification GTPase trmE [Bacteroides xylanisolvens XB1A] Length = 465 Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 152/468 (32%), Positives = 249/468 (53%), Gaps = 37/468 (7%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI---- 60 ++TI A++T A AI IR+SGP + I K K + + + GRI Sbjct: 3 QDTICAIAT-AQGGAIGSIRVSGPEAISITGSIFKPAKAGKLLSEQKPYTLTFGRIYDGD 61 Query: 61 --LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 +D+ L+ +F +P S+TGEDS E HG ++ +++ L K R+A PGE+++RAF Sbjct: 62 EMIDEVLVSLFRAPHSYTGEDSTEITCHGSTYILQQVMQLLIK-NGCRMAQPGEYTQRAF 120 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NGK+DL +AE++ADLI+S + RL+M M G S +KL + S IE +LDF Sbjct: 121 LNGKMDLSQAEAVADLIASSSAATHRLAMSQMRGGFSKELTDLRNKLLNFTSMIELELDF 180 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQG-KLGEIIRNGYKIVILGHSNAGKSSLFN 237 SEE DV+ F+ + L + + S ++ +G I+NG + I+G +NAGKS+L N Sbjct: 181 SEE-DVE-FADRSALRKLADEIEQVISRLAHSFSVGNAIKNGVPVAIIGETNAGKSTLLN 238 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 L +D AIV+DI GTTRDV+ +++ G + DTAGIRET+D +E GI+RTF +++ Sbjct: 239 VLLNEDKAIVSDIHGTTRDVIEDTVNIGGITFRFIDTAGIRETNDTIESLGIERTFQKLD 298 Query: 298 NADLIL-LLKEINSKKEIS------FPK--NIDFIFIGTKSDLYSTYTEE-YDHLISSFT 347 A+++L ++ +N+ +I P+ I + K+DL +E L+ F Sbjct: 299 QAEIVLWMVDAVNAASQIEQLSEKIIPRCEGKHLIVVFNKADLIEDKQKENVLSLLKDFP 358 Query: 348 GEGLEEL-INKIKSILSNKFKKLPFS------------IPSHKRHLYHLSQTVRYLEMAS 394 E E + I+ + +++ +K+ I ++ RH L++ + + Sbjct: 359 KESTESIFISAKQRKNTSELQKMLIDAAHLPTVTQNDIIVTNVRHYEALNKALEAIHRVQ 418 Query: 395 --LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L+ + G D +++++R + I G V + +L IF FCIGK Sbjct: 419 NGLDSQISG-DFLSQDIRECIFFISDIAGEVTNDMVLQNIFQHFCIGK 465 >gi|260171369|ref|ZP_05757781.1| tRNA modification GTPase TrmE [Bacteroides sp. D2] gi|315919680|ref|ZP_07915920.1| tRNA modification GTPase TrmE [Bacteroides sp. D2] gi|313693555|gb|EFS30390.1| tRNA modification GTPase TrmE [Bacteroides sp. D2] Length = 465 Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 153/468 (32%), Positives = 249/468 (53%), Gaps = 37/468 (7%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP---FPRKASLRYFFG--LDG- 58 ++TI A++T A AI IR+SGP + I K K + FG DG Sbjct: 3 QDTICAIAT-AQGGAIGSIRVSGPEAISITGSIFKPAKTGKLLSEQKPYTLTFGRIYDGD 61 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 ++D+ L+ +F +P S+TGEDS E HG ++ +++ L K R+A PGE+++RAF Sbjct: 62 EMIDEVLVSLFRAPHSYTGEDSTEITCHGSTYILQQVMQLLIK-NGCRMAKPGEYTQRAF 120 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NGK+DL +AE++ADLI+S + RL+M M G S +KL + S IE +LDF Sbjct: 121 LNGKMDLSQAEAVADLIASSSAATHRLAMSQMRGGFSKELTDLRNKLLNFTSMIELELDF 180 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQG-KLGEIIRNGYKIVILGHSNAGKSSLFN 237 SEE DV+ F+ + L + + S ++ +G I+NG + I+G +NAGKS+L N Sbjct: 181 SEE-DVE-FADRSALRKLADEIEQVISRLAHSFSVGNAIKNGVPVAIIGETNAGKSTLLN 238 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 L +D AIV+DI GTTRDV+ +++ G + DTAGIRET+D +E GI+RTF +++ Sbjct: 239 VLLNEDKAIVSDIHGTTRDVIEDTVNIGGITFRFIDTAGIRETNDTIESLGIERTFQKLD 298 Query: 298 NADLIL-LLKEINSKKEIS------FPK--NIDFIFIGTKSDLYSTYTEE-YDHLISSFT 347 A+++L ++ +N+ +I P+ I + K+DL +E L+ F Sbjct: 299 QAEIVLWMVDAVNAASQIEQLSEKIIPRCEGKHLIVVFNKADLIEDKQKENLLSLLKDFP 358 Query: 348 GEGLEEL-INKIKSILSNKFKKLPFS------------IPSHKRHLYHLSQTVRYLEMAS 394 E E + I+ + +++ +K+ I ++ RH L++ + + Sbjct: 359 KESTESIFISAKQRKNTSELQKMLIDAAHLPTVTQNDIIVTNVRHYEALNKALEAIHRVQ 418 Query: 395 --LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L+ + G D +++++R + I G V + +L IF FCIGK Sbjct: 419 NGLDSQISG-DFLSQDIRECIFFISDIAGEVTNDMVLQNIFQHFCIGK 465 >gi|78224743|ref|YP_386490.1| tRNA modification GTPase TrmE [Geobacter metallireducens GS-15] gi|123570636|sp|Q39PQ9|MNME_GEOMG RecName: Full=tRNA modification GTPase mnmE gi|78195998|gb|ABB33765.1| tRNA modification GTPase trmE [Geobacter metallireducens GS-15] Length = 457 Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 148/465 (31%), Positives = 242/465 (52%), Gaps = 40/465 (8%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL----DGR- 59 ++TI A+ T I IIR+SGP + I ++ S R+++G + R Sbjct: 4 EDTIAAIGTPVGEGGIGIIRVSGPDVPAIARRIVRRVNENGDFVSHRFYYGTVVDPESRD 63 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 +D+ + ++ +P SFT ED E HGG V +L+ + + R A PGEF+RRAF Sbjct: 64 TVDEVMAVLMRAPRSFTREDVLEIQCHGGYLVTRRVLDAVLQC-GARPAEPGEFTRRAFL 122 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NG+IDL++AE++ D+I S+TE L+ G LS L H + +EA +DF Sbjct: 123 NGRIDLVQAEAVIDVIRSKTEAALNLAQHQREGRLSERLKAVQGCLRHSLALVEAFIDFP 182 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 ++E V S E+ I + G ++R+G ++I G N GKSSL N L Sbjct: 183 DDE-VDPASRVEIEAKAREASGRIEELLEGFDEGRVLRDGVSVLIAGKPNVGKSSLLNTL 241 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 ++ AIVT +PGTTRD++ +++ G +++ DTAGIRET+D+VE+EG++ T ++ A Sbjct: 242 LQEKRAIVTSVPGTTRDIIEEVVNVRGLPLRMLDTAGIRETEDVVEQEGVRLTLEKIPQA 301 Query: 300 DLILLLK------EINSKKEISFPKNIDFIFIGTKSDLYSTYTEE------YDHLISSFT 347 DLIL + + + + ++ I + KSDL T + IS+ T Sbjct: 302 DLILFVLDGSRPFDDDDRMILAALAERRVIVVTNKSDLPVTLRIPGELEGVHTVAISTAT 361 Query: 348 GEGLEELINKI-------KSILSNKFKKLPFSIPSHKRHLYHLSQ-----TVRYLEMASL 395 G G+++L + ++I S ++ L S RH L + V + +A+ Sbjct: 362 GAGIDDLREAVFETFIHGRAIDSREYVAL-----SQTRHRDALVKARGRIAVFFANLAAG 416 Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 N+ L+I+A +LR A ++G++TG + +L++IF +FCIGK Sbjct: 417 ND----LEILAVDLRDALDAVGEVTGETTPDDILELIFQRFCIGK 457 >gi|254494883|ref|ZP_01052239.2| tRNA modification GTPase, ThdF family [Polaribacter sp. MED152] gi|213690465|gb|EAQ41667.2| tRNA modification GTPase, ThdF family [Polaribacter sp. MED152] Length = 467 Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 157/472 (33%), Positives = 254/472 (53%), Gaps = 47/472 (9%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFI---CKKKKPFPRKASLRYFFGL---D 57 + +TI A++T + AIS+IRLSG + + KK K + + G + Sbjct: 8 KNDTIIALATPSGVGAISVIRLSGDKAITIADSFFKSIKKDKKLTDQKTHTIHLGHIVNN 67 Query: 58 GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 G ILD+ L+ VF +P S+TGE+ E HG + I++ K R+A+ GEF+ RA Sbjct: 68 GLILDEVLVSVFKNPNSYTGENVVEISCHGSTYIQQEIIQLFLK-NGCRMADNGEFTMRA 126 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSME----GMSGELSSLYGQWIDKLTHIRSFIE 173 F NGK+DL +AE++AD+I+S +E ++++ G+S EL L GQ +D + IE Sbjct: 127 FLNGKMDLSQAEAVADVIASNSEASHVMAIQQMRGGISNELKELRGQLLD----FAALIE 182 Query: 174 ADLDFSEEEDVQNFSSKEVLNDILF-LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232 +LDFS E DV+ F+ + +++ + + + I G ++NG + I+G N GK Sbjct: 183 LELDFSGE-DVE-FADRTKFKELVAKITHVLKRLIDSFSFGNAMKNGIPVAIIGEPNVGK 240 Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292 S+L NAL ++ AIV+DI GTTRD + +L +EG + DTAGIR+T+DIVE GIK+ Sbjct: 241 STLLNALLNEERAIVSDIAGTTRDAIEDELIIEGVAFRFIDTAGIRKTEDIVENIGIKKA 300 Query: 293 FLEVENADLILLLKEINSKK-----------EISFPKNIDFIFIGTKSDLYSTYTEEYDH 341 + + ENA LI+ L + S+ + FP N + + K DL TEE + Sbjct: 301 YEKAENAQLIIFLIDAKSENKENRLAEIEAIQQRFP-NKKLLVVANKIDLIP--TEELEQ 357 Query: 342 L---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM 392 L +S+ G++EL ++ S+++ +I ++ RH L+ + + + Sbjct: 358 LKSNIDNLMPLSAKNNVGIDELKQELTSLVNIGALSNNETIVTNSRHFEALNNAL--IAI 415 Query: 393 ASLNEK---DCGLDIIAENLRLASVSLGKITGCVDVEQ-LLDIIFSKFCIGK 440 +S+ + + D+ + ++R LG ITG DV++ +L IFS FCIGK Sbjct: 416 SSVQKGIDLEISTDLFSIDIRECLRHLGAITGDYDVDKDILGHIFSNFCIGK 467 >gi|296284831|ref|ZP_06862829.1| tRNA modification GTPase TrmE [Citromicrobium bathyomarinum JL354] Length = 377 Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 140/384 (36%), Positives = 208/384 (54%), Gaps = 19/384 (4%) Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+ L++ FP P + TGED AE H HGG AV+ I L +LR A GEF+RRAF N Sbjct: 9 LDEALVLWFPGPNTATGEDCAEIHCHGGRAVIRAIETALETGCSLRRAEAGEFTRRAFLN 68 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G++DLLEAE+L D++S+ETE+QR + G SS +W D++ + +E +LDFS+ Sbjct: 69 GRMDLLEAEALGDMLSAETELQRAVLASSAGGAASSRLAEWRDEVLAASAAVEQELDFSD 128 Query: 181 EE--DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 ++ D+ + L I + + S +L R+G +IV+ G NAGKSSLFNA Sbjct: 129 DDQGDLPPAPWRGALEGIASQMDQWLATPSADRL----RDGLRIVLAGPPNAGKSSLFNA 184 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVE 297 + + AIV+ I GTTRDV+ + L G + DTAG+R E D +E+ GI R E+ Sbjct: 185 VLDEAAAIVSPIAGTTRDVIERPIALGGVPFLLVDTAGLRGEGGDEIEQLGIMRAEGELG 244 Query: 298 NADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTE-EYDHLISSFTGEGLEELIN 356 AD+IL L E P + + + + SDL + E +SS T +GL +LI Sbjct: 245 RADIILWL-----GPEGEGPA--EALEVASMSDLEDAARKGEGAFHVSSTTRDGLADLIA 297 Query: 357 KIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSL 416 + ++ + K P + +R L+ + A++ + L I E LR A ++ Sbjct: 298 HLVALGRERLPK-PGQVAVSRRQKERLADARESIRRAAIEDD---LLIAGEALRQARHAM 353 Query: 417 GKITGCVDVEQLLDIIFSKFCIGK 440 + G V E +LD +F +FCIGK Sbjct: 354 DAMLGTVATEDMLDALFGRFCIGK 377 >gi|160882059|ref|YP_001561027.1| tRNA modification GTPase TrmE [Clostridium phytofermentans ISDg] gi|189036198|sp|A9KLX9|MNME_CLOPH RecName: Full=tRNA modification GTPase mnmE gi|160430725|gb|ABX44288.1| tRNA modification GTPase TrmE [Clostridium phytofermentans ISDg] Length = 458 Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 159/471 (33%), Positives = 250/471 (53%), Gaps = 52/471 (11%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-----SLRYFFGLDGR- 59 +TI A++TG + ISI+R+SG F V + I + K R + ++ Y + +D Sbjct: 4 DTIAAIATGLSNAGISIVRISGDQAFAVIDKIFQTKSKAKRLSEMDSHTVHYGYIVDEEE 63 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 I+D+ ++I+ +P S+T EDS E HGGI V +LE + K R+A PGEF++RAF Sbjct: 64 IIDEVMVIIMRAPRSYTMEDSIEIDCHGGITVTKKVLEAVLK-AGARIAEPGEFTKRAFL 122 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR-------SFI 172 NG+IDL +AE++ D+I + E+ + SM+ L G + K+ +R ++I Sbjct: 123 NGRIDLSQAEAVIDVIHANNELALKNSMK-------QLKGNVLHKVKDVRHSIILDTAYI 175 Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232 EA LD E ++ FS K N I +K ++S I+ + G +I+ G + VILG NAGK Sbjct: 176 EAALDDPEHISLEGFSDKLRDNVIGSIK-ELSELINTSENGRMIKEGIRTVILGRPNAGK 234 Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292 SSL N + ++ AIVT+I GTTRD + + L G + + DTAGIRET D+VEK G++++ Sbjct: 235 SSLLNLMVGEERAIVTEIAGTTRDTIEETVFLNGLCLNLIDTAGIRETSDLVEKLGVEKS 294 Query: 293 FLEVENADLILLLKEINS------KKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF 346 + ADLI+ + + ++ K+ + F K+ I + KSDL S EE +L+++ Sbjct: 295 LKSAKEADLIICVIDASTPLNQDDKEILEFIKDRKAIVLLNKSDLDSVIEEEKINLLTN- 353 Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIP----------------SHKRHLYHLSQTVRYL 390 + I KI +I K L +I ++ RH L + L Sbjct: 354 ------KPILKISAIDQTGIKDLEQTITEMFFEGNISFNDEIYITNMRHKNALVEAKVSL 407 Query: 391 EMASLN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E ++ E + D + +L A LG I G E L++ IF +FC+GK Sbjct: 408 EQVIVSIENEMPEDFFSIDLMNAYEILGTIIGESVDEDLVNTIFKEFCMGK 458 >gi|189460549|ref|ZP_03009334.1| hypothetical protein BACCOP_01190 [Bacteroides coprocola DSM 17136] gi|189432793|gb|EDV01778.1| hypothetical protein BACCOP_01190 [Bacteroides coprocola DSM 17136] Length = 487 Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 152/490 (31%), Positives = 249/490 (50%), Gaps = 55/490 (11%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFG--- 55 + ++TI A++T A AI IR+SG + + F KP + FG Sbjct: 3 IQQTEDTICAIAT-AQGGAIGTIRVSGAQAIAITDRIFTPISGKPLTERKPYTLTFGHIL 61 Query: 56 -LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114 G I+D+ L+ +F P S+TGEDS E HG ++ +++ L K R A PGE++ Sbjct: 62 SPAGEIIDEVLVSLFRVPHSYTGEDSVEISCHGSSYILQQVMQLLIK-NGCRAAGPGEYT 120 Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174 +RAF NGK+DL +AE++ADLI+S + R++M M G S +KL H+ S +E Sbjct: 121 QRAFLNGKMDLSQAEAVADLIASTSAATHRMAMNQMRGGFSRELSALREKLLHLTSLMEL 180 Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSH-ISQGKLGEIIRNGYKIVILGHSNAGKS 233 +LDFS+ E+++ F+ + L +I + SH + +G ++NG + I+G +NAGKS Sbjct: 181 ELDFSDHEELE-FADRSELEEIAQQIEQVISHLVDTFSVGNALKNGVPVAIVGETNAGKS 239 Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293 +L NAL ++ AIV+DI GTTRDV+ ++L G + DTAGIRET D +E GI+R+F Sbjct: 240 TLLNALLNEERAIVSDIHGTTRDVIEDTMNLGGVTFRFIDTAGIRETTDTIESLGIERSF 299 Query: 294 LEVENADLILLLKEINSKKE---------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLIS 344 ++E A+++L + + +E + + + + K+DL TE+ Sbjct: 300 QKLEQANIVLWVIDATCAEEQYHQLAEKILPRCQGKHLVIVLNKTDLLP-LTEKSLSCSV 358 Query: 345 SFTGEGLEELINKIKSILSN--------------------------KFKKLP-----FSI 373 + T + + I+ +K+IL + F LP + Sbjct: 359 TDTTASMHKPIDDLKAILPDLPEDACVISLSAKQKEGLSLLQKQLVDFAALPDLSQNDVV 418 Query: 374 PSHKRHLYHLSQTVRYLEMAS--LNEKDCGLDIIAENLRLASVSLGKITGC-VDVEQLLD 430 S+ RH LS+ + + L + G D+++++LR L +I G + +++L Sbjct: 419 VSNIRHYEALSRALEAIHRVQDGLTMQLSG-DLVSQDLRECLFHLAEIVGGEITNDEVLG 477 Query: 431 IIFSKFCIGK 440 IF FCIGK Sbjct: 478 NIFKHFCIGK 487 >gi|157164829|ref|YP_001466649.1| tRNA modification GTPase TrmE [Campylobacter concisus 13826] gi|205829127|sp|A7ZCZ1|MNME_CAMC1 RecName: Full=tRNA modification GTPase mnmE gi|112800067|gb|EAT97411.1| tRNA modification GTPase TrmE [Campylobacter concisus 13826] Length = 441 Score = 203 bits (516), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 148/447 (33%), Positives = 234/447 (52%), Gaps = 20/447 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 ETI A++T ++SI+RLSG + K PR A L + +D ILD+G+ Sbjct: 3 ETIAALATAYGIGSVSIVRLSGKDALATSLKLLKLSNLEPRYAKLAKIYSIDDEILDEGI 62 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 +I F +P SFTGED EF HGG+ V IL EL + RLA PGEFS+RAF NGK+DL Sbjct: 63 VIYFKAPASFTGEDIVEFQTHGGVMVSERILNELIR-AGARLAMPGEFSKRAFLNGKMDL 121 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ LI+S++E+ ++ M G+LS G+ ++ +F+E +D+++++ Sbjct: 122 AKAEAMQGLITSKSEIAAKILTRQMQGDLSKFVGEIRGEVVKTLAFVETMIDYADDDLPA 181 Query: 186 NFSSKEVLNDILFLKN----DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 N + ++ LKN + + +S+ + G I +G+KI I+G N GKSS+ N+ Sbjct: 182 NLLEQ---TKLMLLKNSEKLERIATLSEQRRGLI--DGFKIAIVGKPNVGKSSILNSFLA 236 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 + AIV+D GTTRD + + + +LV+I DTAGIR+ +E+ GI + + AD+ Sbjct: 237 YERAIVSDEAGTTRDRIEENFKIGSHLVRIIDTAGIRKDAGKIEQIGINYSISAINEADI 296 Query: 302 ILLL------KEINSKKEISFPKNID--FIFIGTKSDLYSTYTEEYDHLISSFTGEGLEE 353 IL + + K+ I N + FI KSDL + E D I Sbjct: 297 ILAVFDGSCPSDEQDKEIIRLISNSNKKAFFILNKSDLAFKFDIELDGAIKISAKNDSSV 356 Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLAS 413 ++ +++ L K + + S R + + L+ A L + L+I A L A Sbjct: 357 VLKELEGYL--KTQDTDEIMLSSNRQILSCKEASEALKRAFLRLNEEELEIFAYELNSAI 414 Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440 +L IT + ++LD +FS FC+GK Sbjct: 415 KALASITKPFERSEILDEMFSHFCLGK 441 >gi|295108622|emb|CBL22575.1| tRNA modification GTPase trmE [Ruminococcus obeum A2-162] Length = 457 Score = 203 bits (516), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 156/459 (33%), Positives = 246/459 (53%), Gaps = 30/459 (6%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKA---SLRYFFGLDGR-I 60 TI A+ST S I I+R+SG V I + K K R+ ++ Y F DG + Sbjct: 4 TIAAISTAMSASGIGIVRISGEKAMDVIANIYRSKNGKKDIREVGSHTIHYGFIYDGEEV 63 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+ L+++ P ++TGED+ E HGG+ + +LE + K + +A PGEF++RAF N Sbjct: 64 VDEVLVMIMKGPHTYTGEDTVEIDCHGGVYAMKRVLETVLKNGAI-IAEPGEFTKRAFLN 122 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G++DL +AE++ D+I ++ M + S+E + G + + +L H ++IE LD E Sbjct: 123 GRLDLSQAEAVMDVIQAKNSMALKSSVEQLKGSVQKAIREIRARLLHQIAYIETALDDPE 182 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 D+ + +E+L + +IS+ + G +I+ G K VILG NAGKSSL N L Sbjct: 183 HFDLTGYP-QELLEIVEKESENISNLLKTADDGRMIQEGIKTVILGKPNAGKSSLLNFLV 241 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 +D AIVT+I GTTRD+L + L G +++ DTAGIRET+DIVEK G+ + E+AD Sbjct: 242 GEDRAIVTEIAGTTRDILEEYISLNGITLRMIDTAGIRETEDIVEKIGVGKAKQMAEDAD 301 Query: 301 LILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYT-EEYDHL-------ISSF 346 LIL + + N ++ + I I K+DL + + EE +S Sbjct: 302 LILYVVDSSLPLDENDREIMELLSGRKSIVIYNKTDLEAAVSIEELKEKTGSPVIPVSVV 361 Query: 347 TGEGLEELINKIKSILSNKFKKLPFS---IPSHKRHLYHLSQTVRYLEMA--SLNEKDCG 401 GL +L ++I+ + + +L F+ ++ RH L + L++ S+N Sbjct: 362 EETGLRQLEDEIRRMFFH--GELSFNDEVYITNARHKAALEEAKESLKLVKESIN-MGMA 418 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D + +L A SLG+I G E L++ IFSKFC+GK Sbjct: 419 EDFFSIDLMSAYESLGRIVGESVGEDLVNEIFSKFCVGK 457 >gi|224372875|ref|YP_002607247.1| tRNA modification GTPase TrmE [Nautilia profundicola AmH] gi|223589292|gb|ACM93028.1| tRNA modification GTPase TrmE [Nautilia profundicola AmH] Length = 442 Score = 203 bits (516), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 145/465 (31%), Positives = 243/465 (52%), Gaps = 54/465 (11%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 ETI A++T AISI+RLSG + +++ + + KK PR A+L + ++D GL Sbjct: 2 ETIAAIATPNGVGAISIVRLSGDNAYEIAKKLTKKDLT-PRVATLSKLYNNKNELIDIGL 60 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 +I F +P SFTGED EF HGG+ V +LE L + R A PGEF++RAF NGKID Sbjct: 61 VIYFKAPNSFTGEDIVEFQCHGGVIVSRLVLETLFEY-GARAAFPGEFTKRAFLNGKIDA 119 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++A LI + + +L + G+L + +KL I ++ E +D++EE D+ Sbjct: 120 SQAEAIAKLIETRSREGAKLLSRQLDGDLGEFVDEVREKLIEIMAYTEVFIDYAEE-DLP 178 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 E+ + +++ + + K E + +GYKI I+G N GKSS+ NAL K A Sbjct: 179 ETLGYEIEERLAKIEHLLKHTLEVSKRREGMLSGYKIAIVGKPNVGKSSILNALLNKQRA 238 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL-- 303 IV+DI GTTRD + D+ + +L++I DTAGIR D +EK G++R+ ++ AD++L Sbjct: 239 IVSDIAGTTRDTIEEDIQIGSHLIRIIDTAGIRAAKDEIEKIGVERSKEAIKEADIVLAV 298 Query: 304 ---------------LLKE--------INS-----KKEISFPKNIDFIFIGTKSDLYSTY 335 ++KE IN +IS +N+ + I K D+ + Sbjct: 299 FDATEFTDEDEQILNIIKESGKDTIIVINKIDKGIDSDISKFENMPVVKISAKEDI-TPL 357 Query: 336 TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL 395 E+ ++ S++GE LI+ I + ++ L + ++ +L+ Sbjct: 358 VEKLKEILDSYSGEDEHVLIS-------------ARQINAVEKALKSIEESKEFLQTGE- 403 Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L++ + ++ A ++ +IT + +++LD +F FC+GK Sbjct: 404 ------LELFSYQIQDAIRAISEITKPFEYDEMLDKMFGSFCVGK 442 >gi|225164330|ref|ZP_03726597.1| tRNA modification GTPase TrmE [Opitutaceae bacterium TAV2] gi|224801064|gb|EEG19393.1| tRNA modification GTPase TrmE [Opitutaceae bacterium TAV2] Length = 508 Score = 203 bits (516), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 149/489 (30%), Positives = 239/489 (48%), Gaps = 58/489 (11%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A++T A SAI++IR SGP+C ++ + P PR+A+ + + G++LD L Sbjct: 24 DTIAALATPAGTSAIAVIRASGPACAELVAALFPPSPPLPRRATHVDYHDVAGKLLDDVL 83 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + F P S+TGEDS E HG + IL +L + R A GEF+RRAF NG+IDL Sbjct: 84 VTWFRGPRSYTGEDSLEIACHGNPLIAQLILADLFQR-GCRPAEAGEFTRRAFLNGRIDL 142 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ DLI + +E + + + G L D L + + IEA +DF +E D+ Sbjct: 143 SQAEAVMDLIHARSERALAAANQQLRGSLGRHLATLTDALLLVLARIEAYIDFPDE-DLP 201 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 + + V +++ + + ++ + GE++R G K VI+G NAGKSSL N L +D A Sbjct: 202 DEDRRIVADELASVLRGTNQLLATSRYGELLREGIKTVIIGEPNAGKSSLLNRLVGRDRA 261 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 +V+ PGTTRD + + + + +++ DTAG+ T +EK GI +T ADL L + Sbjct: 262 LVSPEPGTTRDFIEELIIIGPHALRLIDTAGLNPTPGAIEKLGIDKTLERAAEADLFLWV 321 Query: 306 KEINSKKEISFPKNI-------DFIFIGTKSDLYSTYT---------------------- 336 ++ + P I + I + K+DL T Sbjct: 322 QDATLPSP-ALPPEIAARLTPANAIILRNKTDLLERRTSNIERPTSNVQGPVSNAQPNPM 380 Query: 337 ----------------------EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS-- 372 E +S+ TG G +EL + I + L++ + Sbjct: 381 QGTDGEAAHSMLDVRCSMFDVRREASLSVSALTGAGFDELASAITT-LADALAQTTGDEL 439 Query: 373 IPSHKRHLYHLSQTVRYLEMASLNEKDCG-LDIIAENLRLASVSLGKITGCVDVEQLLDI 431 I + RH L + + L A L +++A +LR A +LG+I G +D E++LD Sbjct: 440 IAINARHADALRRALDCLTAAQLKLSSVAPTELLASDLRGALDALGEIAGKIDNERMLDH 499 Query: 432 IFSKFCIGK 440 +F+ FCIGK Sbjct: 500 LFATFCIGK 508 >gi|323307689|gb|EGA60952.1| Mss1p [Saccharomyces cerevisiae FostersO] Length = 484 Score = 203 bits (516), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 145/410 (35%), Positives = 222/410 (54%), Gaps = 56/410 (13%) Query: 4 EKETIFAVSTGA-LPSAISIIRLSGPSC-FQVCEFICKKKKPFPRKASLRYFFGLDGR-- 59 ++ TI+A+ST A SAI+IIR+SG + + P RK LR + Sbjct: 35 QQPTIYALSTPANQTSAIAIIRISGTHAKYIYNRLVDSSTVPPIRKXILRNIYSPSSCSV 94 Query: 60 ----------ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKM------P 103 +LD LL+ F +P SFTGED E HVHGG AVVN IL+ + + Sbjct: 95 KPHDQKESKILLDTSLLLYFQAPYSFTGEDVLELHVHGGKAVVNSILKAIGSLHDRSSGK 154 Query: 104 NLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWID 163 ++R A PG+FSRRAF+NGK DL + E + DLI SETE QRR ++ +G+ L+ W + Sbjct: 155 DIRFALPGDFSRRAFQNGKFDLTQLEGIKDLIDSETESQRRSALSSFNGDNKILFENWRE 214 Query: 164 KLTHIRSFIEADLDFSEE--EDVQNFSSKEVLND----ILFLKNDISSHISQGKLGEIIR 217 + + + A +DF+++ +++QN + E+ +D I+ L++ I + + + + I++ Sbjct: 215 TIIENMAQLTAIIDFADDNSQEIQN--TDEIFHDVEKNIICLRDQIVTFMQKVEKSTILQ 272 Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 NG K+V+LG N GKSSL N+L D++IV+DIPGTTRD + +++ GY V I DTAGI Sbjct: 273 NGIKLVLLGAPNVGKSSLVNSLTNDDISIVSDIPGTTRDSIDAMINVNGYKVIICDTAGI 332 Query: 278 RE-TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNI------------DFIF 324 RE + D +E GI+R + +DL L + + ++ P++I I Sbjct: 333 REKSSDKIEMLGIERAKKKSVQSDLCLFIVDPTDLSKL-LPEDILAHLSSKTFGNKRIII 391 Query: 325 IGTKSDLYST--YTEEYDHL------------ISSFTGEGLEELINKIKS 360 + KSDL S T+ + L +S T EG+E LI+ + S Sbjct: 392 VVNKSDLVSDDEMTKVLNKLQTRLGSKYPILSVSCKTKEGIESLISTLTS 441 >gi|323342292|ref|ZP_08082524.1| tRNA modification GTPase TrmE [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463404|gb|EFY08598.1| tRNA modification GTPase TrmE [Erysipelothrix rhusiopathiae ATCC 19414] Length = 446 Score = 203 bits (516), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 137/447 (30%), Positives = 244/447 (54%), Gaps = 18/447 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD---GRILD 62 +TI A+ T SAI+++R+SG + I + ++ Y +D +++D Sbjct: 6 DTIVAIITALQESAINVLRISGVDAIDIVNQIFSRDLEHVDSHTVHYGHIIDPVNKQVVD 65 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 + L+ VF +P ++T ED E HGG+ V +L L R+A PGE+++RAF NG+ Sbjct: 66 EVLVSVFRAPRTYTREDVVEISCHGGVLVTKKVLS-LCLSVGARMAEPGEYTQRAFLNGR 124 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 IDL +AES+ +LI + E + L++ G+ G + L ++++L + + IE ++D+ E + Sbjct: 125 IDLSQAESVMELIQAPNEFAQELAISGVQGNVRKLIEPFLERLIQMIANIEVNIDYPEYD 184 Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 DV+ + +L + D+ + + + G I++ G K VILG N GKSS+ N L ++ Sbjct: 185 DVEVLTEAVILPEAKRFLEDLGKILKESQSGRIMKEGVKTVILGKPNVGKSSILNVLLEE 244 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 D AIVT+I GTTRD++ + LE + + DTAG+R+T D +E+ GI+++ +E+A+L+ Sbjct: 245 DKAIVTEIAGTTRDLVEGWIRLENVALHLIDTAGLRDTGDRIEQIGIEKSRKALESAELV 304 Query: 303 LLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356 +++ + + ++ + K+ + I + K DL + E D L S + EL++ Sbjct: 305 IVVFDASQARDQEDIDLLEATKHKERIIVYNKKDLVN---REPDGLYVSALEGDVHELVD 361 Query: 357 KIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCG--LDIIAENLRLAS 413 +I K L S++RH+ + ++ YL M +L + G LD++ +L + Sbjct: 362 EINKRYVEHTKALTKPTLSNERHIAQVQKS--YLAMQRALEALEFGMELDLVTIDLNESY 419 Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440 V L I +LD IF++FC+GK Sbjct: 420 VELASIIKPKKDINVLDEIFARFCLGK 446 >gi|237722682|ref|ZP_04553163.1| tRNA modification GTPase TrmE [Bacteroides sp. 2_2_4] gi|229448492|gb|EEO54283.1| tRNA modification GTPase TrmE [Bacteroides sp. 2_2_4] Length = 465 Score = 203 bits (516), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 152/468 (32%), Positives = 251/468 (53%), Gaps = 37/468 (7%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP---FPRKASLRYFFG--LDG- 58 ++TI A++T A AI IR+SGP + I K K + FG DG Sbjct: 3 QDTICAIAT-AQGGAIGSIRVSGPEAISITGSIFKPAKTGKLLSEQKPYTLTFGRIYDGD 61 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 I+D+ L+ +F +P S+TGEDS E HG ++ +++ L + R+A PGE+++RAF Sbjct: 62 EIIDEVLVSLFRAPHSYTGEDSTEITCHGSSYILQQVMQLLIE-NGCRMAQPGEYTQRAF 120 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NGK+DL +AE++ADLI+S + RL+M M G S + +KL + S IE +LDF Sbjct: 121 LNGKMDLSQAEAVADLIASSSAATHRLAMSQMRGGFSRELTELRNKLLNFTSMIELELDF 180 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQG-KLGEIIRNGYKIVILGHSNAGKSSLFN 237 SEE DV+ F+ + L + + S ++ +G I+NG + I+G +NAGKS+L N Sbjct: 181 SEE-DVE-FADRSALRKLADEIEQVISRLAHSFSVGNAIKNGVPVAIIGETNAGKSTLLN 238 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 L +D AIV+D+ GTTRDV+ +++ G + DTAGIRET+D +E GI+RTF +++ Sbjct: 239 VLLNEDKAIVSDVHGTTRDVIEDTINIGGITFRFIDTAGIRETNDTIESLGIERTFQKLD 298 Query: 298 NADLIL-LLKEINSKKEIS------FPK--NIDFIFIGTKSDLYSTYTEE-YDHLISSFT 347 A+++L ++ +N+ +I P+ I + K+DL +E L+ F Sbjct: 299 QAEIVLWMVDAVNAASQIEQLSEKIIPRCEGKHLIVVFNKADLIEDKQKENLLSLLKDFP 358 Query: 348 GEGLEEL-INKIKSILSNKFKKLPFS------------IPSHKRHLYHLSQTVRYLE--M 392 E E + I+ + +++ +K+ I ++ RH L++ + + Sbjct: 359 KESTESIFISAKQRENTSELQKMLIDAAHLPTVTQNDIIVTNVRHYEALNKALEAIHRVQ 418 Query: 393 ASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + L+ + G D +++++R + I G V + +L IF FCIGK Sbjct: 419 SGLDSQISG-DFLSQDIRECIFFISDIAGEVTNDMVLQNIFQHFCIGK 465 >gi|253569670|ref|ZP_04847079.1| tRNA modification GTPase mnmE [Bacteroides sp. 1_1_6] gi|251840051|gb|EES68133.1| tRNA modification GTPase mnmE [Bacteroides sp. 1_1_6] Length = 465 Score = 203 bits (516), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 155/471 (32%), Positives = 248/471 (52%), Gaps = 43/471 (9%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI---- 60 ++TI A++T A AI IR+SGP + I + K + + + GRI Sbjct: 3 QDTICAIAT-AQGGAIGSIRVSGPEAISITSRIFQPAKAGKLLSEQKPYTLTFGRIYNGE 61 Query: 61 --LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 +D+ L+ +F +P S+TGEDS E HG ++ +++ L K R+A PGE+++RAF Sbjct: 62 EVIDEVLVSLFRAPHSYTGEDSTEITCHGSSYILQQVMQLLIK-NGCRMAQPGEYTQRAF 120 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NGK+DL +AE++ADLI+S + RL+M M G S KL + S IE +LDF Sbjct: 121 LNGKMDLSQAEAVADLIASSSAATHRLAMSQMRGGFSKELTDLRSKLLNFTSMIELELDF 180 Query: 179 SEEEDVQNFSSKEVLNDIL-FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 SEE DV+ F+ + L + ++ IS + +G I+NG + I+G +NAGKS+L N Sbjct: 181 SEE-DVE-FADRSALRKLADEIEQVISRLVHSFNVGNAIKNGVPVAIIGETNAGKSTLLN 238 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 L +D AIV+DI GTTRDV+ +++ G + DTAGIRET+D +E GI+RTF +++ Sbjct: 239 VLLNEDKAIVSDIHGTTRDVIEDTINIGGITFRFIDTAGIRETNDTIESLGIERTFQKLD 298 Query: 298 NADLILLL-------KEINSKKEISFPK--NIDFIFIGTKSDLY-STYTEEYDHLISSFT 347 A+++L + +I E P+ I + K+DL EE L+ F Sbjct: 299 QAEIVLWMVDSSDASSQIKQLSEKIIPRCEEKQLIVVFNKADLIEEKQKEELSALLKDFP 358 Query: 348 GEGLEEL-INKIKSILSNKFKKLPFSIPSHKRHLYHLSQ------TVRYLEMAS-----L 395 E + + I+ + +++ +K+ + HL ++Q VR+ E+ S + Sbjct: 359 KEYTKSIFISAKERKQTDELQKMLINAA----HLPTVTQNDIIVTNVRHYEVLSKALDAI 414 Query: 396 NEKDCGL------DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + GL D +++++R + I G V + +L IF FCIGK Sbjct: 415 HRVQDGLETHISGDFLSQDIRECIFFISDIAGEVTNDMVLQNIFQHFCIGK 465 >gi|50364829|ref|YP_053254.1| tRNA modification GTPase TrmE [Mesoplasma florum L1] gi|81392031|sp|Q6F2A3|MNME_MESFL RecName: Full=tRNA modification GTPase mnmE gi|50363385|gb|AAT75370.1| tRNA modification GTPase [Mesoplasma florum L1] Length = 452 Score = 203 bits (516), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 160/472 (33%), Positives = 253/472 (53%), Gaps = 52/472 (11%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR- 59 MN+ +TI A +T AIS+IR+SG F + + K K + +R F DG+ Sbjct: 1 MNNLNQTIVAPTTNISTQAISLIRISGDDSFNIINKLLKTKIKEEKNVWVRKMF--DGQE 58 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 ++D+ ++ F SP SFTGE+ E HGGI I+ + K R+AN GEFS+RAF Sbjct: 59 LVDEVVITSFVSPASFTGENVVEIACHGGILNTQRIINLIIK-NGARMANKGEFSQRAFL 117 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFIEAD 175 N KIDL++AE + DLI ++ E+ ++ + MSG + +L G +D I S I+ Sbjct: 118 NNKIDLIQAEGINDLIFAKNELALKIGVNNMSGAHNQSIINLKGNLLD----IISRIQVS 173 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +D+ + +DV+ S E+ + + ++++ + + K+ NG K I+G +N GKSSL Sbjct: 174 IDYPDYDDVEGSSIPELAKALSGINEEVNNLLKRSKMAIKNTNGIKTAIVGKTNVGKSSL 233 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 NAL +D AIVTDI GTTRD++T +++LE + + DTAGIRET DIVE GI+++ Sbjct: 234 LNALLNEDKAIVTDIHGTTRDIVTGEINLENISLNLIDTAGIRETTDIVEGLGIEKSLKI 293 Query: 296 VENADLILLL---KEINSKK-EISFPK--NIDFIFIGTKS------------DLYSTY-- 335 ++ A+L+L + K IN ++ ++ F K N ++I + KS DL++ + Sbjct: 294 IDEAELVLFVVDFKSINDEENKMIFDKLENKNYILVFNKSEFINDIERNKIKDLHNNFVY 353 Query: 336 ----TEEYDHLISSFTGEGL-EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL 390 + D+LI + EE+IN IL N + + + Q L Sbjct: 354 TSAINNDIDNLIMKIEQMHINEEIINNDSLILIN------------LQQITLVEQVKDRL 401 Query: 391 EMASLNEKDCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E SLN G+ DI+ +L A L ++ G E+++D IF K+C+GK Sbjct: 402 E-KSLNAIIGGMPIDIVNVDLHEAWDYLNQLIGEQYDEEIIDNIFKKYCLGK 452 >gi|317500879|ref|ZP_07959091.1| tRNA modification GTPase TrmE [Lachnospiraceae bacterium 8_1_57FAA] gi|316897759|gb|EFV19818.1| tRNA modification GTPase TrmE [Lachnospiraceae bacterium 8_1_57FAA] Length = 465 Score = 203 bits (516), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 162/478 (33%), Positives = 248/478 (51%), Gaps = 57/478 (11%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF--PRKASLRYFFGLDGRI-- 60 KETI A+STG S I I+R+SG V + I + KK + ++ Y + +D I Sbjct: 3 KETIAAISTGMTNSGIGIVRISGEEAVLVADRIYRGKKKLCEVKSHTINYGYIVDREISS 62 Query: 61 --------LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGE 112 +D+ L+ V +P +FTGED+ E + HGG VV +LE + K A PGE Sbjct: 63 AEKKSEEVIDEVLVTVMKAPGTFTGEDTVEINCHGGTFVVKKVLELVLK-NGASPAEPGE 121 Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172 F++RAF NGK+DL +AE++ D+I+SE E + S+ + G + +K+ + +FI Sbjct: 122 FTKRAFLNGKMDLSQAEAVIDVINSENEYALQSSVSQLKGSVKKKINDIREKIIYHTAFI 181 Query: 173 EADLDFSEEEDVQNFS------SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILG 226 E LD E V +S ++E++ ++ L I G +I+ G K VI+G Sbjct: 182 ETALDDPEHISVDGYSDTLRSSAEEIIQELERL-------IHSADDGRVIKEGIKTVIVG 234 Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEK 286 NAGKSSL N LA + AIVTDI GTTRDVL + L G + + DTAGIR+T+D++EK Sbjct: 235 KPNAGKSSLLNVLAGHERAIVTDIEGTTRDVLEETIKLGGLNLNVVDTAGIRQTEDLIEK 294 Query: 287 EGIKRTFLEVENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD 340 G+ + E ADLI+ + + N +K I+ + I + KSD+ + + E Sbjct: 295 IGVDKALEYAETADLIIYVVDASRSLDENDEKIINMISDKKSIVLLNKSDIDTVISAE-- 352 Query: 341 HL-----------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY 389 H+ IS+ G+++L +K+K + F K S + + ++ ++ Q Sbjct: 353 HIKEKVSNIPIISISAKEERGIKDLEDKVKEM----FLKGDISF-NDQVYISNVRQKNAL 407 Query: 390 LEMASLNEK-------DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LE +K + D + +L A SLG ITG E L++ IFSKFC+GK Sbjct: 408 LEALESMKKVIRSIDDNMPEDFYSIDLMDAYESLGYITGNSVGEDLINEIFSKFCMGK 465 >gi|258569587|ref|XP_002543597.1| conserved hypothetical protein [Uncinocarpus reesii 1704] gi|237903867|gb|EEP78268.1| conserved hypothetical protein [Uncinocarpus reesii 1704] Length = 571 Score = 203 bits (516), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 116/315 (36%), Positives = 184/315 (58%), Gaps = 28/315 (8%) Query: 18 SAISIIRLSGPSCFQVCEFIC-KKKKPFPRKASLRYFF-----GLDGRILDKGLLIV-FP 70 +AI+I+R+SGP+C Q+ + + P PR ASLR + +LD G L++ FP Sbjct: 21 AAIAIVRISGPACPQIYKGLSFDSSLPKPRYASLRTLYEPGKPPSTNTVLDSGALVLYFP 80 Query: 71 SPESFTGEDSAEFHVHGGIAVVNGILEELAK----------MPNLRLANPGEFSRRAFEN 120 +P++ TGED E H+HG AV+ +L + K P++R A PGEF+RRAF N Sbjct: 81 APKTVTGEDVLELHIHGSPAVIKAVLNAIPKCAGNGSEAGSQPSIRYAEPGEFTRRAFLN 140 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 ++DL + E+L + ++++TE QRRL++ G S LS+ Y W +L + R +EA +DFSE Sbjct: 141 NRLDLPQIEALGNTLAADTEQQRRLAVRGTSDTLSARYEDWRQQLLYARGELEALIDFSE 200 Query: 181 ----EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 +E V +F + + L N I+ HI GE++R+G K+ +LG NAGKSSL Sbjct: 201 DQHFDESVDDF-MLSITKQVRKLLNQINVHIENASKGELLRSGIKVALLGAPNAGKSSLL 259 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI------VEKEGIK 290 N + ++ AIV+ GTTRD++ + +DL+ ++ + + I ETD+ VE+EGI+ Sbjct: 260 NRIVGREAAIVSSEEGTTRDIVDVGVDLDMAGLRSTPSKVIGETDNTSVIIGEVEREGIR 319 Query: 291 RTFLEVENADLILLL 305 R +DL++ + Sbjct: 320 RAKARALESDLVIAV 334 >gi|291529193|emb|CBK94779.1| tRNA modification GTPase trmE [Eubacterium rectale M104/1] Length = 458 Score = 202 bits (515), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 157/462 (33%), Positives = 250/462 (54%), Gaps = 30/462 (6%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-----RKASLRYFFGLDG 58 + +TI A++T PS I IIR+SG V + I K K + ++ Y F DG Sbjct: 2 QNDTIAAIATAMSPSGIGIIRISGDDALSVIDRIYKSKNNKKKISACQSHTIHYGFIYDG 61 Query: 59 -RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 +D+ ++++ +P ++T ED+ E HGG+ V+ +LE + K R A PGEF++RA Sbjct: 62 DEKIDEVMVLLMKAPNTYTREDTVEIDCHGGVYVMKRVLEAVIK-NGARPAEPGEFTKRA 120 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NG+IDL +AES+ D+I+S+ + + S+ + G + Q ++L H +FIE+ LD Sbjct: 121 FLNGRIDLSQAESVIDVINSKNDFALKSSLSQLGGAVLGSIRQIREQLLHEIAFIESALD 180 Query: 178 FSEEEDVQNFSSK-EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 E + + K + D +++ I S + G I++ G VI+G NAGKSSL Sbjct: 181 DPEHISLDGYPQKLRAIVDNEYVE--IDSLLKTSDNGRILKEGINTVIIGKPNAGKSSLL 238 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N L D AIVTDI GTTRDVL +++ G + + DTAGIR T+D+VEK G+K+ Sbjct: 239 NVLVGSDRAIVTDIAGTTRDVLEEQINIGGITLNLVDTAGIRSTEDVVEKIGVKKAMEHA 298 Query: 297 ENADLIL------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEE-----YDHLISS 345 ADLI+ ++ + N I+F K+ + + KSDL S + + D + S Sbjct: 299 NEADLIIYVVDSSVVFDDNDYDIINFIKDKKAVILLNKSDLASKVSADDIKKLVDKTVIS 358 Query: 346 FTGE---GLEELINKIKSILSN---KFK-KLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398 + + G++EL + IK + + F ++ + HK+ L ++++ L M S+++ Sbjct: 359 VSAKESSGIDELSDTIKEMFFDGQVSFNDEIYITNIRHKKLLSDAKESLK-LVMNSIDD- 416 Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D D + +L A SLG I G + L+D IFSKFC+GK Sbjct: 417 DMPEDFYSIDLMSAYESLGLIIGESVEDDLMDEIFSKFCMGK 458 >gi|5174779|gb|AAD40696.1| 50 kDa protein [Caulobacter crescentus CB15] Length = 331 Score = 202 bits (515), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 122/338 (36%), Positives = 193/338 (57%), Gaps = 26/338 (7%) Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181 K+DL +AE +ADLI +ETE QRR ++ + G LS Y +W D L + +EA +DF +E Sbjct: 1 KLDLAQAEGVADLIDAETEAQRRQALGQVGGALSQRYDRWRDLLVQALAMLEAAVDFPDE 60 Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 D+ ++ + L ++++ ++ G +R+G++I ++G NAGKS+L N LA+ Sbjct: 61 -DLPEEVAERARPGLRQLSAELNAALADVSRGRRVRDGFRIALIGAPNAGKSTLLNGLAE 119 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 +D AIVTD+ GTTRDV+ + L L GY V ++DTAGIRET D++E EG++R E ADL Sbjct: 120 RDAAIVTDVAGTTRDVIEVPLVLGGYKVLVADTAGIRETADVIEAEGVRRAKAWAEAADL 179 Query: 302 ILLLKE-INSKKEISFPKNI---DFIFIGTKSDLYSTYTEEYDHLISSFTGEGL------ 351 L + + + K+ + P+ I D++ + K+D+ + H+ + GEGL Sbjct: 180 RLWVVDGFHVKQADARPEAIRVGDWLIL-NKTDIAD--ADASAHVAERWAGEGLTVLHIA 236 Query: 352 -------EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI 404 E L + S +++ F + RH LS+ YLE A D GL++ Sbjct: 237 GTSAEGPEALRAALASHVADALSGAEFPAATRLRHAERLSEARSYLERAL---SDVGLEV 293 Query: 405 --IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 AE++RLA+ +L +I+G +D E +L +FS FCIGK Sbjct: 294 ELAAEDVRLAARALERISGRIDPEDVLGRVFSTFCIGK 331 >gi|237750079|ref|ZP_04580559.1| tRNA modification GTPase mnmE [Helicobacter bilis ATCC 43879] gi|229374266|gb|EEO24657.1| tRNA modification GTPase mnmE [Helicobacter bilis ATCC 43879] Length = 450 Score = 202 bits (515), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 152/453 (33%), Positives = 241/453 (53%), Gaps = 24/453 (5%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP----FPRKASLRYFFGLDGRILD 62 TI A+S+ SAISIIRLSG + + KK PRKA+L + G +LD Sbjct: 3 TIVAISSALAKSAISIIRLSGDEALHIASKLLKKDALESLLIPRKATLHRIYNEKGEMLD 62 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 K ++I F SP+SFTGED EF HGGI V N IL+ LA GEFS RA N K Sbjct: 63 KAIVIYFKSPKSFTGEDIVEFQSHGGILVANEILKACLAF-GATLAKAGEFSMRALRNNK 121 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 +DL+E E+ LI++ +L + G+LS + ++ +I + IE ++D+SEE+ Sbjct: 122 LDLVELEATLALINNTNTNLTKLLTRNIDGKLSEMLESVRQEILNIIAQIEVNIDYSEED 181 Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 ++ SK V + +L ++ + + + + +++ K+ I+G N GKSSL N L + Sbjct: 182 LDKDILSKSV-STLLSIQARFQAILDSSRHYQKLQD-IKLCIIGKPNVGKSSLLNLLLMQ 239 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 D AIV+DI GTTRD +T LD+ G LV ++DTAGI + D +E +GI+++ +++I Sbjct: 240 DRAIVSDIAGTTRDTITAVLDICGNLVSLTDTAGIHTSTDSIEMQGIEKSMKSARESEII 299 Query: 303 LLLKEIN---SKKE---ISFPK----NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLE 352 L + +I+ SK++ + F K N + + K+DL T ++ + T + Sbjct: 300 LCVFDISKPMSKEDFEILDFLKSECSNKSVLIVLNKNDLARQNTHDFTPF-QTITLNTKD 358 Query: 353 E-----LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAE 407 E L KI + L+ + F + ++ L + L +A + L++ + Sbjct: 359 ENNARLLKEKIANFLTMEIDNNTF-VLTNATQSNLLESACKNLSIAKELLMNGSLELASF 417 Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L + SLG +T DVE +LD +FS+FC+GK Sbjct: 418 ELHQSLQSLGSMTKPYDVEDMLDSMFSQFCVGK 450 >gi|210624042|ref|ZP_03294159.1| hypothetical protein CLOHIR_02111 [Clostridium hiranonis DSM 13275] gi|210153249|gb|EEA84255.1| hypothetical protein CLOHIR_02111 [Clostridium hiranonis DSM 13275] Length = 462 Score = 202 bits (515), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 156/460 (33%), Positives = 247/460 (53%), Gaps = 30/460 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFI-----CKKKKPFPRKASLRYFFG--LDG 58 +TI A++T I IIR+SGP +V E I KK +P + FG DG Sbjct: 8 DTIAAIATAPGEGGIGIIRISGPKSLEVAEEIFFSMSGKKISEYPART---LIFGNIKDG 64 Query: 59 -RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 + +D+ L+ P S+T ED E + HGG V ILE L ++RLA GEF++RA Sbjct: 65 DKKIDEVLVAYMKGPNSYTAEDVIEINCHGGFISVKRILE-LVLSKDVRLAEAGEFTKRA 123 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NG+IDL +AE++ D+I+++T+ ++ + G LS+ ++ +K+T + + +E +D Sbjct: 124 FLNGRIDLSQAEAVIDVINAKTDKAHEVAENQLDGSLSNRIREFREKVTELLAQVEVAID 183 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 + EE D++ + + L DI + G+I R G K VI+G N GKSSL N Sbjct: 184 YPEE-DIEFIAYTTLEEKTRELNKDIKKLYETSESGKIFREGLKTVIVGKPNVGKSSLLN 242 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 ++ ++ AIVTDIPGTTRDV+ ++++G +KI DTAGIRETDD+VEK G++++ + Sbjct: 243 SILGENRAIVTDIPGTTRDVIEEFVNIKGIPLKIVDTAGIRETDDVVEKIGVEKSMASFD 302 Query: 298 NADLILL---------------LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL 342 ADLI++ L+++ K+ I D + + ++ EE Sbjct: 303 TADLIIMVVDSSSELSEEDREILEKVQGKETILLLNKTDLPQVIDEEEVKKYVNEENIIK 362 Query: 343 ISSFTGEGLEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-C 400 IS+ EG+E++ ++I++++ K I ++ RH L + ++ E A +D Sbjct: 363 ISALHNEGIEDVHDRIEAMVYKGDIKSSSNVIITNSRHKDALYRAMKSAEDAMRAIEDRM 422 Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LD + +L+ LG I G E LLD IF FCIGK Sbjct: 423 PLDFVEVDLKNIWDYLGYINGDTVSEDLLDNIFHNFCIGK 462 >gi|320589254|gb|EFX01716.1| mitochondrial GTPase [Grosmannia clavigera kw1407] Length = 591 Score = 202 bits (514), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 114/313 (36%), Positives = 175/313 (55%), Gaps = 24/313 (7%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF-PRKASLRYFFGLDGR--I 60 ++ TI+A+S+ + I++IR+SGP+C QV +C PR A++R + + Sbjct: 62 DQSTIYALSSAPGKAGIAVIRVSGPACLQVRRALCPTAAQLKPRYAAVRTLYRPQASDDV 121 Query: 61 LDK-GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN--LRLANPGEFSRRA 117 LD +++ FP P++ TGED E HVHGG A V +L + +R A PGEF+RRA Sbjct: 122 LDTDAVVLYFPGPKTVTGEDVLELHVHGGAATVRAVLSAIPATSQTAIRYAEPGEFTRRA 181 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSG-ELSSLYGQWIDKLTHIRSFIEADL 176 F + ++DL E E+L + +ETE QRR ++ G G +L + Y W +L R+ IEA + Sbjct: 182 FFHDRVDLAEVEALGAALDAETEQQRRAAVRGSGGRQLGATYDGWRRELLAARAEIEALI 241 Query: 177 DFSEEEDVQNFSSKE------VLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNA 230 DF+E+ Q+F V + L +++H + G ++R G +I ++G +NA Sbjct: 242 DFAED---QHFDESPTDLLGGVSGHVRTLLRALATHEAAADRGSLLRQGIRIALVGPANA 298 Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI------- 283 GKSS+ N +A + +IV+ GTTRDV+ LDL GYL +DTAG R D+ Sbjct: 299 GKSSMMNLVAGRAASIVSPEAGTTRDVVQASLDLRGYLCTFADTAGFRNIRDVRDTSAAS 358 Query: 284 -VEKEGIKRTFLE 295 +E EGI+R E Sbjct: 359 TIEAEGIRRARQE 371 >gi|164686452|ref|ZP_02210480.1| hypothetical protein CLOBAR_00017 [Clostridium bartlettii DSM 16795] gi|164604463|gb|EDQ97928.1| hypothetical protein CLOBAR_00017 [Clostridium bartlettii DSM 16795] Length = 462 Score = 202 bits (514), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 162/462 (35%), Positives = 252/462 (54%), Gaps = 34/462 (7%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK----KKKPFPRKASLRYFFGLDG-RI 60 +TI A++T I IIR+SG + +V E I K KK +L Y DG + Sbjct: 8 DTIAAIATAPGEGGIGIIRISGSNSLKVAEEIFKAVSGKKISEYNSRTLVYGNIFDGEKR 67 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+ L+ P S+TGED E + HGG V ILE L ++RLA GEF++RAF N Sbjct: 68 IDEVLVAYMEGPRSYTGEDVIEINCHGGFISVKKILE-LILTKDVRLAEAGEFTKRAFLN 126 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G+IDL +AE++ D+I S+T+ + ++ + G L++ K+T + + +E +DFS+ Sbjct: 127 GRIDLSQAEAVIDVIKSKTDKAQEVAQNQLEGSLANKIKSLRLKVTEVLAQLEVSIDFSD 186 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E DV++ + KE+ L L+ +I + G+I+R+G K VI+G N GKSSL N++ Sbjct: 187 E-DVEDVTYKEIEEKSLELREEIKKLYDSAESGKILRDGLKTVIIGKPNVGKSSLLNSIL 245 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVT+I GTTRDV+ ++++G +KI DTAGIRET+DIVEK G++++ +++AD Sbjct: 246 GENRAIVTEIAGTTRDVIEEFVNIKGIPLKIVDTAGIRETEDIVEKIGVQKSKESIDSAD 305 Query: 301 LIL---------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY---DHL 342 L++ +L+ SKK I ID + T EE+ D++ Sbjct: 306 LVIIVLDSSKSLTDEDLEILESAKSKKTIVLLNKIDL-----DQAIDETAIEEFVGKDNI 360 Query: 343 --ISSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EK 398 IS+ EG+E++ +KI+S + + K + ++ RH L + + A E+ Sbjct: 361 IKISALKNEGIEQIHDKIESMVFAGDVKSSSNLVITNSRHKDALFKAYNSINDAIDGIEQ 420 Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D I + + LG I G E LLD IFS FCIGK Sbjct: 421 RLPYDFIEVDFKNIWDYLGYINGDTVQEDLLDTIFSNFCIGK 462 >gi|300776911|ref|ZP_07086769.1| tRNA modification GTPase TrmE [Chryseobacterium gleum ATCC 35910] gi|300502421|gb|EFK33561.1| tRNA modification GTPase TrmE [Chryseobacterium gleum ATCC 35910] Length = 461 Score = 202 bits (514), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 153/473 (32%), Positives = 260/473 (54%), Gaps = 53/473 (11%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-------SLRYFFGLDG 58 +TI A++T A+ IIR+SG V + K FP K ++ Y + +D Sbjct: 4 DTICALATANGIGALGIIRVSGNEALSVVQ------KSFPAKNLAKQKSHTIHYGYFMDE 57 Query: 59 R-ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 +D+ +L +F +P+SFT E+S E HG + ILE L K R+A GEF+ RA Sbjct: 58 EEAIDEVMLSIFLAPKSFTTENSVEIAFHGSPHIGKRILETLIK-NGARMAKAGEFTLRA 116 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NG+IDL +AE++AD+I+SE E R++++ + G +++ L + S IE +LD Sbjct: 117 FINGRIDLSQAEAIADVIASENEASRKVAINQLKGGITNEISILRTDLLNFVSLIELELD 176 Query: 178 FSEEEDVQNFSSKEVLNDIL-FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 F+EE DV+ F+ + L+ +L ++ ++S I + G I+NG + I+G NAGKS+L Sbjct: 177 FAEE-DVE-FADRSALSGLLDKIEVKLNSLIESFQYGNAIKNGTAVAIIGKPNAGKSTLL 234 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N+L K++ AIV++I GTTRD + L ++G+ ++ DTAG+RET D +E G+K+ +V Sbjct: 235 NSLLKEERAIVSNIAGTTRDTIEEVLHIKGHAFRLIDTAGLRETVDEIEAIGVKKAKEKV 294 Query: 297 ENADLILLLKEINSKKEISFPKNIDFIFIGTKSDL----------------YSTY----- 335 ENA++++ L + ++ F ++I+ I + DL Y T Sbjct: 295 ENANILVYLADAATE---DFSEDIEMIQSLVREDLKLIICATKIDEVMPAKYETVEDIFR 351 Query: 336 ---TEEYDHL-ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL- 390 + E+D + IS+ + +++L N++ S + + + + +++RH L +++ + Sbjct: 352 NAISHEFDFIKISAVENQNIQDLKNELSSYVEHLKSEENNVVITNQRHFEALRKSLHAVH 411 Query: 391 ---EMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E S +++A LR A LG+I+G V +++L IFSKFCIGK Sbjct: 412 KVKEAISF---QISTELLAYELRNALEHLGEISGEVTNDEVLGNIFSKFCIGK 461 >gi|282859538|ref|ZP_06268643.1| tRNA modification GTPase TrmE [Prevotella bivia JCVIHMP010] gi|282587766|gb|EFB92966.1| tRNA modification GTPase TrmE [Prevotella bivia JCVIHMP010] Length = 446 Score = 202 bits (514), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 148/464 (31%), Positives = 247/464 (53%), Gaps = 49/464 (10%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD--GRILDK 63 +TI A++T + A+ IIR++G I K + ++ Y LD G+++D+ Sbjct: 3 DTICALATQS-GGALGIIRIAGSEAIPFVNSIFSKDITSAKANTIHYGNILDQSGKVIDE 61 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 ++ ++ +P S+TGED+ E HG ++ +L L R ANPGEF++RA+ NGK+ Sbjct: 62 VVVSLWRAPHSYTGEDAIEISCHGSSFILQEVLHALIA-SGCRQANPGEFTQRAYLNGKM 120 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL +AE++ADLI+S +++ + G S +L I S +E +LDFSE E+ Sbjct: 121 DLSQAEAVADLIASSNRASYEMALSQLKGHFSDELTTLRKRLLKITSLLELELDFSEHEE 180 Query: 184 VQNFSSKEVLNDILFLKNDISSHI---SQG-KLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 ++ F+ + L D L N+I + +Q K G+ ++ G + I+G +N GKS+L N L Sbjct: 181 LE-FADRSELVD---LTNEIDEKVLSLAQSFKTGQALKRGISVAIIGKTNVGKSTLLNQL 236 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 ++ AIV++I GTTRDV+ D+ G + DTAGIRET D+VE+ GI+RT+ E++NA Sbjct: 237 LGEERAIVSNIEGTTRDVIEDTTDINGITFRFIDTAGIRETTDVVEQLGIQRTYKELDNA 296 Query: 300 DLILLLKEINSKKE--------------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISS 345 +++ + +I+ +E + ID I T+S L + IS+ Sbjct: 297 QIVMWILDIDPTQEEYNEIKERVGEKPIVVVRNKIDTIKTSTQSPLVTIS-------ISA 349 Query: 346 FTGEGLEELINKIKSILSNKFKKLPFS----IPSHKRHLYHLSQT----VRYLEMASLNE 397 G + +L + +L K F+ I ++ RH L++ +R L S+ Sbjct: 350 KQGTNMHDL----EQLLYQKANIPAFTENSVIVTNARHYDALTRAHEALLRVLSAFSM-- 403 Query: 398 KDCGLDIIAENLRLASVSLGKITGC-VDVEQLLDIIFSKFCIGK 440 + D++AE+L+ LG+ITG + ++ L+ IF FCIGK Sbjct: 404 -ELSGDLVAEDLKDVIAILGEITGTQISSQETLNNIFKHFCIGK 446 >gi|255011872|ref|ZP_05283998.1| tRNA modification GTPase TrmE [Bacteroides fragilis 3_1_12] gi|313149706|ref|ZP_07811899.1| tRNA modification GTPase TrmE [Bacteroides fragilis 3_1_12] gi|313138473|gb|EFR55833.1| tRNA modification GTPase TrmE [Bacteroides fragilis 3_1_12] Length = 465 Score = 202 bits (514), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 153/470 (32%), Positives = 246/470 (52%), Gaps = 41/470 (8%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI---- 60 ++TI A++T A AI IR+SGP + I KP + + + GRI Sbjct: 3 QDTICAIAT-AQGGAIGSIRVSGPEAITITSRIFTPAKPGKLLSEQKPYTLTFGRIYNGE 61 Query: 61 --LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 +D+ L+ +F +P S+TGEDS E HG ++ +++ L K R A PGE+++RAF Sbjct: 62 ELIDEVLVSLFRAPHSYTGEDSTEITCHGSSYILQQVMQLLIK-NGCRTAQPGEYTQRAF 120 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NGK+DL +AE++ADLI+S + RL++ M G S +KL + S IE +LDF Sbjct: 121 LNGKMDLSQAEAVADLIASSSAATHRLALSQMRGGFSKELAILREKLLNFTSMIELELDF 180 Query: 179 SEEEDVQNFSSKEVLNDIL-FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 SEE DV+ F+ + L + ++ I+ + +G I+NG + I+G +NAGKS+L N Sbjct: 181 SEE-DVE-FADRSALRQLADGIEKVIARLVDSFSVGNAIKNGVPVAIIGETNAGKSTLLN 238 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 L +D AIV+DI GTTRDV+ +++ G + DTAGIRET+D++E GI+RTF +++ Sbjct: 239 VLLNEDKAIVSDIHGTTRDVIEDTVNIGGITFRFIDTAGIRETNDMIESLGIERTFQKLD 298 Query: 298 NADLILLLKEINSKKEIS---------FPK-----------NIDFIFIGTKSDLYSTYTE 337 A+++L + I+S IS P+ ++ I K++L S +E Sbjct: 299 QAEIVLWI--IDSADAISQLKLLSDKILPRCEHKQLILVFNKVELINETQKNELTSQLSE 356 Query: 338 EYDH-----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM 392 IS+ + +EL K+ + I ++ RH L++ + + Sbjct: 357 HVGSEIESIFISAKQRQHTDELQQKLVAAAHLPTVTQNDVIVTNVRHYEALTRALDAIHR 416 Query: 393 AS--LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L+ G D +++++R L I G V + +L IF+ FCIGK Sbjct: 417 VQEGLDANISG-DFLSQDIRECIFHLSDIVGEVTNDMVLQNIFAHFCIGK 465 >gi|6573766|gb|AAF17686.1|AC009243_13 F28K19.23 [Arabidopsis thaliana] Length = 613 Score = 202 bits (514), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 159/490 (32%), Positives = 245/490 (50%), Gaps = 61/490 (12%) Query: 7 TIFAVST--GALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKAS-----------LRYF 53 TI A+ T G P A+ I+RLSGP +V + + K +K S + Y Sbjct: 129 TIVAIVTPIGGPPGAVGIVRLSGPKAVEVARRVFRSAKKTKKKESDSDTWRPKSHFVEYG 188 Query: 54 FGLD--GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPG 111 +D G ++D+ L + +P S+T ED E HG + +L + RLA PG Sbjct: 189 AVVDSNGNVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRTCVEA-GARLAEPG 247 Query: 112 EFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSF 171 EF+ RAF NG++DL +AE++ LIS+++ ++EG+ G SSL + + + Sbjct: 248 EFTLRAFLNGRLDLSQAENVEKLISAKSSAAADAALEGIQGGFSSLVKSLRAQCIELLTE 307 Query: 172 IEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAG 231 IEA LDF E+++ + V+N I + D+ S + +++++G +I I+G N G Sbjct: 308 IEARLDF--EDEMPPLDIESVINKITSMSQDVESALDTANYDKLLQSGLQIAIVGRPNVG 365 Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR 291 KSSL NA +K + AIVT++ GTTRDV+ ++ + G + + DTAGIRET+DIVEK G++R Sbjct: 366 KSSLLNAWSKSERAIVTEVAGTTRDVVEANVTVRGVPITLLDTAGIRETNDIVEKIGVER 425 Query: 292 TFLEVENADLIL---------------LLKEINSKK-EISF------------P-----K 318 + + AD+I+ LL++I S K +SF P Sbjct: 426 SETAAKVADVIIMAVSAVEGWTEEDTELLRKIQSDKVGVSFYDLFGGLLYLKQPMILVMN 485 Query: 319 NIDFIFIGTKSDLYSTY-TEEYDH---LISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374 ID G+ L EE H S+ TG+G+EEL + I IL ++P Sbjct: 486 KIDCAPPGSCDQLEDQRKKEEVFHKSVFTSAVTGQGIEELEDAILEILG--LDRVPTGGH 543 Query: 375 SHKRHLYHLSQTVRYLE----MASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLD 430 + Q VR E + E + +D LR A++SL +I+G E++L Sbjct: 544 QWTVNQRQCEQLVRTKEALVRLREAIEDEIPIDFWTIELREAALSLAQISGQDVSEEVLS 603 Query: 431 IIFSKFCIGK 440 IF+KFCIGK Sbjct: 604 SIFAKFCIGK 613 >gi|255545636|ref|XP_002513878.1| gtpase mss1/trme, putative [Ricinus communis] gi|223546964|gb|EEF48461.1| gtpase mss1/trme, putative [Ricinus communis] Length = 557 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 155/471 (32%), Positives = 232/471 (49%), Gaps = 40/471 (8%) Query: 7 TIFAV--STGALPSAISIIRLSGPSCFQVCEFICKKKKPF-------PRKASLRYFFGLD 57 TI A+ S G P+A+ I+RLSGPS V + K P + Y LD Sbjct: 90 TIAAIVTSVGGPPAAVGIVRLSGPSAVDVAARVFKPMSKKKKKKIWQPTSHVVDYGVALD 149 Query: 58 --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 G ++D+ L + SP S+T ED E HG + +L + RLA PGEF+ Sbjct: 150 NEGNVIDEVLALPMLSPRSYTCEDVVELQCHGSEVCLTRVLRACLQA-GARLAEPGEFTL 208 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG++DL +AE++ LIS+ + ++ G+ G +SL + + + IEA Sbjct: 209 RAFLNGRVDLSQAENVGKLISANSVTAADAALAGLQGGFASLIKSLRAQCIELLTEIEAR 268 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 LDF +E + +++ I + DI + +++++G +I ++G N GKSSL Sbjct: 269 LDFDDE--MPPLDLNLIVDRIHVMSQDIEIALETANYDKLLQSGLQIALVGRPNVGKSSL 326 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 NA +K + AIVT+I GTTRDV+ + + G V + DTAGIRETDDIVEK G++R+ Sbjct: 327 LNAWSKSERAIVTEIAGTTRDVVEAGVTVGGIPVTLLDTAGIRETDDIVEKIGVERSEAV 386 Query: 296 VENADLIL---------------LLKEINSKKE---ISFPKNIDFIFIGTKSDLYSTYTE 337 AD+I+ LL I S K+ S P + I T L + Sbjct: 387 AMGADVIILTISAFDGWTSEDSELLSRIESNKKSVGSSTPVVLAINKIDTAPSLSMEWIG 446 Query: 338 EYDHLIS------SFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYL 390 Y S + TG+G++EL I I+ N+ ++R L +T L Sbjct: 447 RYSKAFSKHVFTCAVTGQGIKELEMAISEIVGLNRIPTGGRKWTVNQRQCEQLMRTKEAL 506 Query: 391 EMASLNEKD-CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + KD LD +LR A+++LG+I+G E++L IF KFCIGK Sbjct: 507 ARLKSSIKDEMPLDFWTIDLRDAALALGQISGEGISEEVLSNIFGKFCIGK 557 >gi|307721584|ref|YP_003892724.1| tRNA modification GTPase trmE [Sulfurimonas autotrophica DSM 16294] gi|306979677|gb|ADN09712.1| tRNA modification GTPase trmE [Sulfurimonas autotrophica DSM 16294] Length = 445 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 148/462 (32%), Positives = 241/462 (52%), Gaps = 46/462 (9%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 ETI A++T +I+IIRLSG + + + K+ PR A+L + + ++D+ + Sbjct: 3 ETIAAIATANGIGSIAIIRLSGEHALDIAKKLTCKENFTPRHATLTNIYNDNNELIDEAI 62 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 +I F P SFT ED E HGG V IL K RLAN GEFS+RAF NG+IDL Sbjct: 63 VIYFKGPYSFTAEDVVEIQCHGGFIVAQTILRATLK-AGARLANAGEFSKRAFFNGRIDL 121 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE---E 182 EAE++A LI +++E ++ M G L Q D + HI ++ E +D++EE E Sbjct: 122 SEAEAIAQLIEAKSEDAAKILASQMKGSLKEFIEQVRDDIIHILAYSEVSIDYAEEDLPE 181 Query: 183 D-VQNFSSKEVLNDI--LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 D V +K L+++ L K I+S +G + G+++ I+G N GKSSL N L Sbjct: 182 DLVAQIQAK--LDELYTLLEKTLITSKSREG-----LMQGFRVAIIGKPNVGKSSLLNTL 234 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 + AIV+DI GTTRD + + + +L++I DTAGIRE++D +E+ GI+R+ + + Sbjct: 235 LNYNRAIVSDIAGTTRDTIEEQVKIGTHLIRIVDTAGIRESNDEIERIGIQRSLEAINES 294 Query: 300 DLIL------------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEE--- 338 D+++ L+K+ KKE+ KN K DL + E Sbjct: 295 DIVIALFDGSRKADEEDEQILELIKQNRDKKEMLVVKN--------KIDLEQKFHLENLA 346 Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398 +D ++S + L+ K+++I+ + S +R + + T++ ++ A + Sbjct: 347 FDLELNSRN--DVTALVKKLEAIMDASNVSDEIMLIS-QRQISAVEATIQNIKEAFEPLQ 403 Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D L+I + +L A + IT + +++LD +F FC+GK Sbjct: 404 DQELEIFSFHLNEAVKEMASITRPFENDEMLDKMFGSFCLGK 445 >gi|256820731|ref|YP_003142010.1| tRNA modification GTPase TrmE [Capnocytophaga ochracea DSM 7271] gi|256582314|gb|ACU93449.1| tRNA modification GTPase TrmE [Capnocytophaga ochracea DSM 7271] Length = 472 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 152/470 (32%), Positives = 251/470 (53%), Gaps = 43/470 (9%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGL---DGRI 60 +TI A++T + AI++IRLSG + + + K K S G ++ Sbjct: 11 DTIVALATASGVGAIAVIRLSGKEAITIADSVFKPHSGKSLLEAPSHTVHLGTLESKDQV 70 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKM---PNLRLANPGEFSRRA 117 +D+ L +F +S+TGE EF HG N I+EE+ K+ RLA+ GEF++RA Sbjct: 71 IDECLATIFKGTKSYTGEPVVEFSCHGS----NYIVEEVIKLCLAKGARLADAGEFTKRA 126 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NGK+ L +AE++ADLI+S+++ +++++ M G +S +L + S IE +LD Sbjct: 127 FLNGKLALNQAEAVADLIASDSKASHQVALQQMRGGFTSEIEGLRQELLNFTSLIELELD 186 Query: 178 FSEEEDVQNFSSKEVLNDIL-FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 FSEE DV+ F+ + +L +K + S + +G +++NG + I+G NAGKS+L Sbjct: 187 FSEE-DVE-FADRTQFKTLLSTIKTIVLSLLQSFSVGNVLKNGIPVAIVGKPNAGKSTLL 244 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 NAL ++ AIV+DI GTTRD + L + G + DTAGIR+T D +E G+++ ++ Sbjct: 245 NALLNEERAIVSDIAGTTRDTIEETLHIGGIAFRFIDTAGIRDTQDQIEAIGVQKAKEKI 304 Query: 297 ENADLILLL---KEINSKKEISFPK-----NIDFIFIGTKSDLY--STYTEEYDHLISSF 346 E A ++L L K+ ++++ ISF K F+ + K+DL S T + ++ S Sbjct: 305 EKASIVLYLFDVKDSSAQEIISFVKENYREGTKFVLLHNKTDLSTESNITPFDNEILQSL 364 Query: 347 TG-----------EG-----LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL 390 G EG L++ ++ L+N K + H L++ Q++ + Sbjct: 365 QGYTDTLLRISAKEGNNILALKDFLSHYAQSLNNTGKATIITNIRHYEALHNTLQSIERI 424 Query: 391 EMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E + D++A ++R A LG ITG V +++L IFS+FCIGK Sbjct: 425 EQGI--QLQLSGDLLAIDIREALYHLGSITGTVSNDEVLGNIFSRFCIGK 472 >gi|315650200|ref|ZP_07903275.1| tRNA modification GTPase TrmE [Eubacterium saburreum DSM 3986] gi|315487557|gb|EFU77865.1| tRNA modification GTPase TrmE [Eubacterium saburreum DSM 3986] Length = 456 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 154/461 (33%), Positives = 239/461 (51%), Gaps = 35/461 (7%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG---LDGRILD 62 +TI A++T S I I+R+SG + + I K S +G I+D Sbjct: 5 DTIAAIATALGESGIGIVRISGEDAIGIADKIYSGNKSLREVNSHTINYGHVYFGDEIID 64 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 + L+++ +P +FTGED+ E + HGGI ++ +L + R+A PGEF++RAF NGK Sbjct: 65 EVLVMLMKAPRTFTGEDTVEINCHGGILILEKVLHAVLSC-GARMALPGEFTKRAFLNGK 123 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 +DL +AE++ D+I ++ ++ + + +SG L+ + K+ +FIEA LD E Sbjct: 124 MDLSQAEAVIDIIEAKNDLALKAGIRQLSGALTESIKKIRAKILEQIAFIEAALDDPEHY 183 Query: 183 DVQNFSSKEVL------NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 + +S+K I +L+ K G IIR G VI+G NAGKSS+ Sbjct: 184 SLDGYSAKLKKIVKKLLGGIEYLQKSF-------KEGSIIREGINTVIIGKPNAGKSSIL 236 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N L++ D AIVTDI GTTRD LT ++ L G + I+DTAGIRETDD+VE G+K+ Sbjct: 237 NLLSRTDRAIVTDIAGTTRDTLTENIKLSGISLNITDTAGIRETDDVVESIGVKKAIEAS 296 Query: 297 ENADL---------------ILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH 341 NADL I L + + K+ I D + D+ Y+++ Sbjct: 297 NNADLNLVVIDGLLPLDSEDISLFESVKDKQAIILINKSDKELKVSVDDIRK-YSDKDVI 355 Query: 342 LISSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKD 399 + S+ GL+EL N IKS +SN+ I ++ RH +++ + L+M S E+ Sbjct: 356 IFSAKDNTGLDELENMIKSKFISNEINFNDQIIITNIRHQEIINEAMESLDMCLSSIEEG 415 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D +L A +LG+I G + +++ IFSKFC+GK Sbjct: 416 YEEDFFTIDLLNAYEALGEIIGETVDDDVVNEIFSKFCMGK 456 >gi|153811977|ref|ZP_01964645.1| hypothetical protein RUMOBE_02370 [Ruminococcus obeum ATCC 29174] gi|149831876|gb|EDM86962.1| hypothetical protein RUMOBE_02370 [Ruminococcus obeum ATCC 29174] Length = 486 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 154/459 (33%), Positives = 246/459 (53%), Gaps = 30/459 (6%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKA---SLRYFFGLDGR-I 60 TI A+ST S I I+R+SG + V I + K K R ++ Y F DG + Sbjct: 33 TIAAISTAMSASGIGIVRISGENAMDVIAKIYRSKNGKKDIRTVVSHTIHYGFIYDGEEV 92 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+ L+++ P ++TGED+ E HGG+ + +LE + K + +A PGEF++RAF N Sbjct: 93 VDEVLVMIMRGPHTYTGEDTVEIDCHGGVYAMKRVLETVLKNGAV-IAEPGEFTKRAFLN 151 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G++DL +AE++ D+I ++ M + S+E + G + + +L H ++IE LD E Sbjct: 152 GRLDLSQAEAVMDVIQAKNSMALKSSVEQLKGSVQRAVKEIRARLLHQIAYIETALDDPE 211 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 D+ ++ +E+ + +IS + G +I+ G K VILG NAGKSSL N L Sbjct: 212 HFDLTDYP-QELQKIVEKESENISELLKTADDGRMIQEGIKTVILGKPNAGKSSLLNFLV 270 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 +D AIVT+I GTTRD+L + L G +++ DTAGIRET+D+VEK G+ + ENAD Sbjct: 271 GEDRAIVTEIAGTTRDILEEYISLNGITLRVIDTAGIRETEDVVEKIGVGKAKQMAENAD 330 Query: 301 LILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTY-TEEYDHL-------ISSF 346 LIL + + N ++ + I I K+DL + EE +S Sbjct: 331 LILYVVDSSLPLDDNDREIMELLSGRKSIVIYNKTDLEAAVDIEELKEKTGSPVIPVSVV 390 Query: 347 TGEGLEELINKIKSILSNKFKKLPFS---IPSHKRHLYHLSQTVRYLEMASLNEKDCGL- 402 G+ +L ++IK + + +L F+ ++ RH L ++ L++ ++ G+ Sbjct: 391 EETGISQLEDEIKRMFFH--GELSFNDEVYITNARHKAALEESKESLKLV-MDSIAMGMS 447 Query: 403 -DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D + +L A SLG+I G E L++ IFSKFC+GK Sbjct: 448 EDFFSIDLMNAYESLGRIVGESVGEDLVNEIFSKFCVGK 486 >gi|153815417|ref|ZP_01968085.1| hypothetical protein RUMTOR_01652 [Ruminococcus torques ATCC 27756] gi|145847276|gb|EDK24194.1| hypothetical protein RUMTOR_01652 [Ruminococcus torques ATCC 27756] Length = 465 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 162/478 (33%), Positives = 247/478 (51%), Gaps = 57/478 (11%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF--PRKASLRYFFGLDGRI-- 60 KETI A+STG S I I+R+SG V + I + KK + ++ Y + +D I Sbjct: 3 KETIAAISTGMTNSGIGIVRISGEEAVLVADRIYRGKKKLCEVKSHTINYGYIVDREISS 62 Query: 61 --------LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGE 112 +D+ L+ V +P +FTGED+ E + HGG VV +LE + K A PGE Sbjct: 63 AEKKSEEVIDEVLVTVMKAPGTFTGEDTVEINCHGGTFVVKKVLELVLK-NGASPAEPGE 121 Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172 F++RAF NGK+DL +AE++ D+I+SE E + S+ + G + K+ + +FI Sbjct: 122 FTKRAFLNGKMDLSQAEAVIDVINSENEYALQSSVSQLKGSVKKKINDIRKKIIYHTAFI 181 Query: 173 EADLDFSEEEDVQNFS------SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILG 226 E LD E V +S ++E++ ++ L I G +I+ G K VI+G Sbjct: 182 ETALDDPEHISVDGYSDTLRSSAEEIIQELERL-------IHSADDGRVIKEGIKTVIVG 234 Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEK 286 NAGKSSL N LA + AIVTDI GTTRDVL + L G + + DTAGIR+T+D++EK Sbjct: 235 KPNAGKSSLLNVLAGHERAIVTDIEGTTRDVLEETIKLGGLNLNVVDTAGIRQTEDLIEK 294 Query: 287 EGIKRTFLEVENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD 340 G+ + E ADLI+ + + N +K I+ + I + KSD+ + + E Sbjct: 295 IGVDKALEYAETADLIIYVVDASRSLDENDEKIINMISDKKSIVLLNKSDIDTVISAE-- 352 Query: 341 HL-----------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY 389 H+ IS+ G+++L +K+K + F K S + + ++ ++ Q Sbjct: 353 HIKEKVSNIPIISISAKEERGIKDLEDKVKEM----FLKGDISF-NDQVYISNVRQKNAL 407 Query: 390 LEMASLNEK-------DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LE +K + D + +L A SLG ITG E L++ IFSKFC+GK Sbjct: 408 LEALESMKKVIRSIDDNMPEDFYSIDLMDAYESLGYITGNSVGEDLINEIFSKFCMGK 465 >gi|322712825|gb|EFZ04398.1| GTPase family protein [Metarhizium anisopliae ARSEF 23] Length = 505 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 148/449 (32%), Positives = 223/449 (49%), Gaps = 79/449 (17%) Query: 60 ILD-KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKM---PNLRLANPGEFSR 115 ILD + LL+ PSP++ TGE+ E HVHGG A V +L + K +R A PGEF++ Sbjct: 38 ILDVEALLLHLPSPKTVTGEEVLELHVHGGPATVKAVLSAIPKCQASTRIRYAEPGEFTK 97 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG++DL + ESL D + +ETE QRR ++ G SG L Y W +L R IEA Sbjct: 98 RAFFNGRLDLAQIESLGDTLDAETEQQRRAAVRGNSGALGRNYEDWRHQLLQARGEIEAL 157 Query: 176 LDFSEEEDVQNF--SSKEVLNDILFLKNDISSHISQGKLG----EIIRNGYKIVILGHSN 229 +DFSE+ Q+F S E+L ++ I I +LG E++RNG +I ++G N Sbjct: 158 IDFSED---QHFDESQSELLENVARQVAKILRSIDLHELGSQRSELLRNGIRIALVGPPN 214 Query: 230 AGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---ETDD---- 282 AGKSSL N + ++ +IV+ GTTRD++ LD+ G+L +DTAG R ET D Sbjct: 215 AGKSSLMNIIVGREASIVSGEAGTTRDIVEASLDIRGFLCSFADTAGFRSKTETSDEVIG 274 Query: 283 IVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPKNIDFIFIGTKSDLYSTYTEEY 339 VE+EGI+R + +D++L+L + S I F K + +S L ++ Sbjct: 275 AVEEEGIRRARARAQESDVVLVLASVEPGPSGPFIHFDKETMALATEAQSSLVVVNKQD- 333 Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLP----------------------------- 370 + G+ L L+ + + ++ ++ LP Sbjct: 334 -----TVDGDVLSHLLRQFRQLVREEYPGLPQEPICISCKEDGSASRDSGVQSVVDALVA 388 Query: 371 -FS----IPSHKRHLYHLSQTVRYL---------EMASLNEKDCGLD----IIAENLRLA 412 FS +P R L +++ R L + + GLD + AE LR A Sbjct: 389 SFSQMTDMPPDMRDLLGVTERQRQLLAKCRGHLEDFMGEAQPQEGLDSDIVLAAEYLRYA 448 Query: 413 SVSLGKITG---CVDVEQLLDIIFSKFCI 438 + L +ITG DVE++L ++F KFC+ Sbjct: 449 ADCLARITGKGEAGDVEEVLGVVFEKFCV 477 >gi|206900693|ref|YP_002251652.1| tRNA modification GTPase TrmE [Dictyoglomus thermophilum H-6-12] gi|206739796|gb|ACI18854.1| tRNA modification GTPase TrmE [Dictyoglomus thermophilum H-6-12] Length = 455 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 153/461 (33%), Positives = 256/461 (55%), Gaps = 32/461 (6%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFG---LDGR 59 K+ I A++T SAI +IRLSGP + + FI KK+K S +G Sbjct: 2 KDNIVAIATPLGFSAIGVIRLSGPDVIDIVKKIFIPKKEKDLKEVLSHTIHYGNIVYKNE 61 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 I+D+ L+ V+ +P+S+TGED E HG ++ IL+ L + R+A GEF++RAF Sbjct: 62 IIDEVLVAVYKAPKSYTGEDMVEIFTHGSPIILEEILKILVE-EGARIAERGEFTKRAFL 120 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NGK+DLL+AES+ ++I +E+++ + ++ + GELS K+ ++R ++EA +DF Sbjct: 121 NGKVDLLQAESINEIIRAESKIALKRALSKLKGELSRKLRDLKSKVEYLRIYLEASIDFP 180 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 E+ V+ ++ + +I +K ++S + + + G+ IR GY ++++G N GKSSLFNAL Sbjct: 181 ED--VEEKEKEDWIRNIEEIKKEVSDLLEKAEKGDWIREGYGVILVGRPNVGKSSLFNAL 238 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 ++D AIVT IPGTTRD + +L L G+LVKI DTAG+ DI++K G++RT +E Sbjct: 239 MREDRAIVTPIPGTTRDYIEGELYLSSGHLVKIYDTAGLGIPKDILDKMGMERTEKILEK 298 Query: 299 ADLILLL---------KEINSKKEISFPKNIDFIFIGTKSDL-----YSTYTEEYDHL-I 343 ++LIL + +EIN ++I +N I + K DL S + ++ + + + Sbjct: 299 SNLILFVVDGSCEASEEEINLLEKIKSYQNKKLILVVNKIDLPQKVDLSVFPKDIEKIFV 358 Query: 344 SSFTGEGLEELINKI-KSILSNKFKKLPFSIPSHK---RHLYHLSQTVRYLEMASLNEKD 399 S+ +G+EE+ I + I S + F H+ + +Y+L + + L Sbjct: 359 SAKERKGIEEIEKVIERHITSQDVEDGIFLNMYHREKLKEVYNLCEE----GLNVLKNLP 414 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LD++ + + + G+I G + D IF FC+GK Sbjct: 415 QSLDVLGDIIYDMDRAFGEILGEEVSLDITDKIFENFCVGK 455 >gi|323303561|gb|EGA57352.1| Mss1p [Saccharomyces cerevisiae FostersB] Length = 413 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 125/327 (38%), Positives = 188/327 (57%), Gaps = 25/327 (7%) Query: 4 EKETIFAVSTGA-LPSAISIIRLSGPSC-FQVCEFICKKKKPFPRKASLRYFFGLDGR-- 59 ++ TI+A+ST A SAI+IIR+SG + + P RK LR + Sbjct: 35 QQPTIYALSTPANQTSAIAIIRISGTHAKYIYNRLVDSSTVPPIRKXILRNIYSPSSCSV 94 Query: 60 ----------ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKM------P 103 +LD LL+ F +P SFTGED E HVHGG AVVN IL+ + + Sbjct: 95 KPHDQKESKILLDTSLLLYFQAPYSFTGEDVLELHVHGGKAVVNSILKAIGSLHDRSSGK 154 Query: 104 NLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWID 163 ++R A PG+FSRRAF+NGK DL + E + DLI SETE QRR ++ +G+ L+ W + Sbjct: 155 DIRFALPGDFSRRAFQNGKFDLTQLEGIKDLIDSETESQRRSALSSFNGDNKILFENWRE 214 Query: 164 KLTHIRSFIEADLDFSEEEDVQNFSSKEVLND----ILFLKNDISSHISQGKLGEIIRNG 219 + + A +DF+++ + ++ E+ +D I+ L++ I + + + + I++NG Sbjct: 215 TIIENMXQLTAIIDFADDNSQEIQNTDEIFHDVEKNIICLRDQIVTFMQKVEKSTILQNG 274 Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 K+V+LG N GKSSL N+L D++IV+DIPGTTRD + +++ GY V I DTAGIRE Sbjct: 275 IKLVLLGAPNVGKSSLVNSLTNDDISIVSDIPGTTRDSIDAMINVNGYKVIICDTAGIRE 334 Query: 280 -TDDIVEKEGIKRTFLEVENADLILLL 305 + D +E GI+R + +DL L + Sbjct: 335 KSSDKIEMLGIERAKKKSVQSDLCLFI 361 >gi|167975307|ref|ZP_02557584.1| tRNA modification GTPase TrmE [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195659820|gb|EDX53200.1| tRNA modification GTPase TrmE [Ureaplasma urealyticum serovar 12 str. ATCC 33696] Length = 437 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 142/446 (31%), Positives = 234/446 (52%), Gaps = 23/446 (5%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRILDK 63 TI A++T + AI IIR+SGP F++ I K +K + + ++ + ++LD+ Sbjct: 3 TIVALATAPMNCAIHIIRISGPQAFEMINKISTTK---IKKETFKIWYTTLKDNDQVLDE 59 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 L+ F P++FTGED E + HGG+ V N I++ L K + A GEFSRRA N K+ Sbjct: 60 VLVNTFVGPKTFTGEDLVEINCHGGVIVANLIIKILIKY-GCQPAQRGEFSRRALLNKKM 118 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTH----IRSFIEADLDFS 179 DL + E++ +L++++ E LS++G+ G L Q I H I IE ++D+ Sbjct: 119 DLSKIEAINNLVNAKNE----LSVKGVIGALLGRVSQSISDFKHELFMIIGQIEVNIDYP 174 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 E +DV+ + + +L L I I Q K + G K++I+G N GKS+L NA+ Sbjct: 175 EYDDVEQVDAINLKQRLLVLNEKIKKIIDQSKNCTNYK-GIKVLIIGKPNVGKSTLLNAI 233 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 + AIVTDIPGTTRDV+ ++++ + I DTAGI T+D VE GI + + Sbjct: 234 CNEQKAIVTDIPGTTRDVIESSINIDNITLNILDTAGIHSTNDFVENLGINKAKELINKV 293 Query: 300 DLILLLKEINSKKEI---SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356 DL+L L N+++++ K+ + + TK DL Y++ D + + ++ LI+ Sbjct: 294 DLVLYLVPANNQQDLELYDLIKDQKHLLVYTKKDLIDQYSD--DQIYINAKDNDIQALID 351 Query: 357 KIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAENLRLASV 414 KIK + +F + +R + L ++ A N EK +D++ +L ++ Sbjct: 352 KIKELFYVQEFDNANIDVLQSQRQIGILENVNYLIDNAITNLEKGDTVDLVVADLEFCNL 411 Query: 415 SLGKITGCVDVEQLLDIIFSKFCIGK 440 L ++ G LD +F FC+GK Sbjct: 412 RLNELLGIGSEYDFLDDLFKNFCVGK 437 >gi|254525774|ref|ZP_05137826.1| tRNA modification GTPase TrmE [Prochlorococcus marinus str. MIT 9202] gi|221537198|gb|EEE39651.1| tRNA modification GTPase TrmE [Prochlorococcus marinus str. MIT 9202] Length = 303 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 118/281 (41%), Positives = 166/281 (59%), Gaps = 9/281 (3%) Query: 19 AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL-----DGRILDKGLLIVFPSPE 73 ++IIR+SG C+ I + K + + S R F G + +D+ L+ V SP Sbjct: 24 GVAIIRVSGKDSINSCKKIVQTKSKYAWE-SHRVFHGFIQENKQNKFIDEVLISVMKSPN 82 Query: 74 SFTGEDSAEFHVHGGIAVVNGILE-ELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLA 132 SFTGED E H HGG+ +VN +L+ L+ +RLANPGEFS+RAF NGKIDL +AES+ Sbjct: 83 SFTGEDVVELHCHGGVIIVNKVLKILLSSNSRVRLANPGEFSQRAFLNGKIDLTQAESIN 142 Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192 LI++ L+ G+ GE+ + L + IEA +DF EED +F + Sbjct: 143 QLINASNTRSAELAFSGIQGEIKKKINDIKNDLINQLCEIEARVDF--EEDFTDFDYTKY 200 Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252 L +I +K I I K I +G I ++G +N GKSSL N LAKK+ AIVT+IPG Sbjct: 201 LKNIKKVKEKIEVLIENAKRNSYIHDGISIALIGKTNVGKSSLLNLLAKKEKAIVTNIPG 260 Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293 TTRDV+ ++L + +KI DTAGIRET + +E+ GIK++F Sbjct: 261 TTRDVIEVNLTINDIPMKIIDTAGIRETREQIERIGIKKSF 301 >gi|227498804|ref|ZP_03928944.1| thiophene and furan oxidation protein thdF [Acidaminococcus sp. D21] gi|226904256|gb|EEH90174.1| thiophene and furan oxidation protein thdF [Acidaminococcus sp. D21] Length = 455 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 142/462 (30%), Positives = 250/462 (54%), Gaps = 34/462 (7%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP--RKASLRYFFGLDGR--I 60 ++TI A++T A+ IIR+SGP ++ I + K+P R L+Y DG+ Sbjct: 2 EDTISAIATALGVGAVGIIRVSGPESLRLVNRIFRAKEPLSSSRPRYLQYGHIHDGKGVD 61 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+ L + P P S+TGED E HGG + IL L R A PGEF++RAF N Sbjct: 62 VDEVLAVYMPGPHSYTGEDVVEIQCHGGREALKEILR-LTFSEGARPAEPGEFTKRAFLN 120 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G++DL EAE++ D+I++++ + G G LS + +L + +EA +D+ E Sbjct: 121 GRLDLTEAEAVMDIINAKSRRALVAAGRGHKGALSRSIREIRGRLRDLVVHLEAIIDYPE 180 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 + D+++ + E + + + +G+ G+I+R G +I I+G N GKSSL N L Sbjct: 181 D-DIEDVTYDETEGVLQQCYDAVMQLRKKGETGQILREGLRIAIVGRPNVGKSSLLNRLL 239 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 + D AIV++IPGTTRD++ + L+G + ++DTAG+R+T+D VE+ G+KR+ +E+A+ Sbjct: 240 QTDRAIVSNIPGTTRDIIEEQMTLDGIPLVLTDTAGLRDTEDYVEQIGVKRSRAILEDAE 299 Query: 301 LILLLKEINS------KKEISFPKNIDFIFIGTKSDLYSTYT-EEYDHL-------ISSF 346 L+L++ + S +K ++ KN + + KSDL + EE + L +S Sbjct: 300 LVLVVLDSASPLTDEDRKLLAAVKNRPHLVLLNKSDLAPALSREEVEALSGGDVLSLSVK 359 Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSH--------KRHLYHLSQTVRYLEMASLNEK 398 G G++++ ++ + + + + ++ +HL++T+R + + Sbjct: 360 DGAGMDQVGIHLRHFVMGEGSDAEMGLMTQNARQGMLLEQAAHHLAETLR--DARAHLPY 417 Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 DC + +L LG+ITG E++++ IF++FC+GK Sbjct: 418 DC----LTIDLTQVLHELGEITGDDVPEEIINEIFAQFCVGK 455 >gi|225377579|ref|ZP_03754800.1| hypothetical protein ROSEINA2194_03229 [Roseburia inulinivorans DSM 16841] gi|225210555|gb|EEG92909.1| hypothetical protein ROSEINA2194_03229 [Roseburia inulinivorans DSM 16841] Length = 457 Score = 201 bits (512), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 155/459 (33%), Positives = 245/459 (53%), Gaps = 29/459 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFI-----CKKKKPFPRKASLRYFFGLDG-R 59 +TI A++T S I I+R+SG + + I KK + P ++ Y DG Sbjct: 4 DTIAAIATAMTSSGIGIVRISGDEAVSITDRIFEMKNQKKLEDMPTH-TIHYGHIHDGDE 62 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 ++D+ ++++ P+S+T ED+ E HGG+ V+ ILE + K R A PGEF++RAF Sbjct: 63 VIDEVMVVLMRGPKSYTREDTVEIDCHGGVYVMKRILETVIKY-GARPAEPGEFTKRAFL 121 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NG+IDL +AES+ D+I+S+ E + S+ +SG +S + + H +FIE+ LD Sbjct: 122 NGRIDLSQAESVIDVINSKNEFALKSSLSQLSGSVSEKIKEIRGNVLHEIAFIESALDDP 181 Query: 180 EEEDVQNFSSK--EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 E + + K +++D++ I ++ G++++ G VI+G NAGKSSL N Sbjct: 182 EHISLDGYPEKLSGIVSDVI---KKIDKLLANSDNGKMLKEGISTVIVGKPNAGKSSLLN 238 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 L ++ AIVTDI GTTRDVL ++L G L+ I DTAGIR+T+D+VEK G++R + Sbjct: 239 FLVGEEKAIVTDIAGTTRDVLEEQINLNGILLNIIDTAGIRDTEDVVEKIGVERAKKYLN 298 Query: 298 NADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEE--YDHL------I 343 NADL++ + + N + + K+ I + KSDL T E HL I Sbjct: 299 NADLVIYVVDTSTALDENDHEIMELLKDRHAIVLLNKSDLSPVTTVEDIRKHLDKKMISI 358 Query: 344 SSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCG 401 S+ G+++L IK + S + ++ RH L + +R L + + D Sbjct: 359 SAKEQTGMDDLEETIKEMFFSGEVTFNDEVYITNIRHKTSLQEALRSLHLVLQSIADDMP 418 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D + +L A LG I G + L++ IFSKFC+GK Sbjct: 419 EDFYSIDLMNAYEELGNIIGESVEDDLVNEIFSKFCMGK 457 >gi|81429490|ref|YP_396491.1| tRNA modification GTPase TrmE [Lactobacillus sakei subsp. sakei 23K] gi|123563597|sp|Q38UE9|MNME_LACSS RecName: Full=tRNA modification GTPase mnmE gi|78611133|emb|CAI56186.1| tRNA modification GTPase trmE [Lactobacillus sakei subsp. sakei 23K] Length = 462 Score = 201 bits (512), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 146/459 (31%), Positives = 249/459 (54%), Gaps = 25/459 (5%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LDGR-- 59 E +TI A+ST AISI+RLSG + + + + K + AS +G +D + Sbjct: 7 EFDTITAISTPPGEGAISIVRLSGDDSLAIIKRVYRGKD-LDKVASHTINYGHIIDPKTD 65 Query: 60 -ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 ++D+ ++ V +P++FT ED E + HGGI N IL+ L R+A PGEF++RAF Sbjct: 66 AVVDEVMVSVMRAPKTFTREDVIEINCHGGIVATNRILQLLMSY-GARMAEPGEFTKRAF 124 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG+IDL +AES+ DLI ++T+ +++++ + G L+ L ++ + + +E ++D+ Sbjct: 125 LNGRIDLTQAESVMDLIRAKTDRAMQVAVDQLDGSLTHLIKNLRQEILEVLAQVEVNIDY 184 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E D +++ +L +K I + + G+++R G I+G N GKSSL N Sbjct: 185 PEY-DTDEMTTRILLEKAELVKGRIGELLQTAQQGKVLREGLATAIVGRPNVGKSSLLNH 243 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L +D AIVTD+ GTTRDVL +++ G +K+ DTAGI +T+D VEK G++R+ + Sbjct: 244 LLHEDKAIVTDVAGTTRDVLEEYVNVRGVPLKLVDTAGIHDTEDKVEKIGVERSRAAITK 303 Query: 299 ADLILLLKE------INSKKEISFPKNIDFIFIGTKSDLYSTYT-EEYDHLI-------- 343 ADLILL+ I ++ I+ + I I K+DL + +E L+ Sbjct: 304 ADLILLVLNQSEPLTIEDRELITATTDKKRIIILNKTDLPNQLDLDELQTLVRADEVIQT 363 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIP-SHKRHLYHLSQTVRYL-EMASLNEKDCG 401 S T EG+ +L +I + + ++ ++ R + L+Q + L E+ S Sbjct: 364 SILTSEGVTDLEAQIAKLFFGGIENSQSTVMITNARQIGLLNQAQQSLDEVISGIAAGMP 423 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ ++ LG+ITG ++L+ +FS+FC+GK Sbjct: 424 VDLVQIDMTNCWDKLGEITGDSAPDELITELFSQFCLGK 462 >gi|189347846|ref|YP_001944375.1| tRNA modification GTPase TrmE [Chlorobium limicola DSM 245] gi|189341993|gb|ACD91396.1| tRNA modification GTPase TrmE [Chlorobium limicola DSM 245] Length = 473 Score = 201 bits (512), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 155/471 (32%), Positives = 252/471 (53%), Gaps = 41/471 (8%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD---GRI 60 +++ I A++T A+++IR+SG + + + +K F + LR G GR+ Sbjct: 10 QEDPIAAIATPLGVGALAVIRISGSGVLDIAQGLFRKSGHFDFQ--LRESKGFTAHFGRV 67 Query: 61 LDK-GLL-----IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114 D+ GL+ +VF SP S+T ED EF HGG VV +L+ L + R A PGEF+ Sbjct: 68 YDRDGLVDEVIALVFRSPNSYTREDMVEFSCHGGPVVVRHMLQALYE-AGCRPAEPGEFT 126 Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174 RRAF NG+IDLL+AE++ ++I + +E R ++ M G LS Q +L + +E Sbjct: 127 RRAFINGRIDLLQAEAIGEMIHARSESAYRTAVNQMQGNLSMKLEQLRQRLLESCAMLEL 186 Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234 +LDFSEE DV+ S E+ ++ L+ ++ + + G ++ G VI+G NAGKS+ Sbjct: 187 ELDFSEE-DVEFQSRGELREQLMQLQAEVQKLVDSYQHGRLLSEGVATVIVGKPNAGKST 245 Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294 L N L ++ AIV+ +PGTTRD + E + +++DTAG+RE + +E+EG+ R++ Sbjct: 246 LLNTLLGEERAIVSHMPGTTRDYIEECFVHEKTMFRLTDTAGLREAAEEIEREGVGRSYK 305 Query: 295 EVENADLILLLKEINSKKEISFPKNI----------DFIFIGTKSDLYSTYTEEYDHL-- 342 ++ ADLIL + +++ + + + I I I K+DL S E L Sbjct: 306 KIGEADLILYMLDLSQPESLKESEVIREFRETYTHAKLIVIANKTDLASDSEERLQQLRE 365 Query: 343 --------ISSFTGEGLEELINKIKSILS--NKFKKLPFSIPS--HKRHLYHLSQTVR-Y 389 IS+ GEG++ L+ + S++ +K + S H L + VR Sbjct: 366 ETGCDVAGISAKQGEGIDGLLRLMSSMVEGLDKLHDASVLVTSLRHYVSLRNAGDAVRNA 425 Query: 390 LEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LE+ G ++IA LR A +G+ITG V E++L++IF +FC+GK Sbjct: 426 LELLGAY---AGTELIAFELRSALDYVGEITGKVVSEEVLNVIFDRFCVGK 473 >gi|289422583|ref|ZP_06424426.1| tRNA modification GTPase TrmE [Peptostreptococcus anaerobius 653-L] gi|289157155|gb|EFD05777.1| tRNA modification GTPase TrmE [Peptostreptococcus anaerobius 653-L] Length = 459 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 149/433 (34%), Positives = 230/433 (53%), Gaps = 45/433 (10%) Query: 42 KPFPRKASLRY-----FFG--LDG-RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVN 93 KPF ++ L Y +G +D R++D+ L+ P S+T ED E + HGG V Sbjct: 38 KPFYKENLLDYPNRSLVYGNIVDSDRVIDEVLIARMEGPNSYTAEDVVEINCHGGFISVK 97 Query: 94 GILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGE 153 ILE + K RLA+PGEF++RAF NG+IDL +AE++ D+I+++T+ ++ + G Sbjct: 98 KILELVLK-KGARLADPGEFTKRAFLNGRIDLSQAEAVIDIINAKTDQSHDIAQTQLEGA 156 Query: 154 LSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLG 213 LS + +T + + +E +D+ EE D++ + KE+ + ++ ++ G Sbjct: 157 LSQKVRSLRNMITEVLAQVEVSIDYPEE-DIEFITYKELTDKTSQIQKEVVKMYETSDTG 215 Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273 +I+R G K ILG N GKSSL N + ++ AIVT+I GTTRDV+ ++++G +KI D Sbjct: 216 KILREGLKTAILGKPNVGKSSLMNWILGENRAIVTEIAGTTRDVIEEFVNIKGIPLKIVD 275 Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLIL---------------LLKEINSKKEISFPK 318 TAGIRETDDIVEK G++++ ++++DL+L +L IN KK + Sbjct: 276 TAGIRETDDIVEKIGVEKSRDHMKSSDLVLVVLDSSRELEEDDLEILDAINPKKTLVLIN 335 Query: 319 NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSI-----LSNKFKKLPFSI 373 ID + EE IS+ +GLE + +KI+++ +SNK + + Sbjct: 336 KIDLESRLDMDKVKEYIAEENIIHISAMENKGLESIHDKIETMVYEGRVSNK-GDVMITN 394 Query: 374 PSHKRHLYHLSQTVRYLEMASLNEKDCGL------DIIAENLRLASVSLGKITGCVDVEQ 427 HK +Y M S+N+ GL D I +L+ A SLG I G E Sbjct: 395 TRHKDAIYK--------AMNSINDAIKGLEDHMSYDFIGVDLKDAWDSLGFINGDTVTED 446 Query: 428 LLDIIFSKFCIGK 440 LLD IF FCIGK Sbjct: 447 LLDTIFKNFCIGK 459 >gi|220909026|ref|YP_002484337.1| tRNA modification GTPase TrmE [Cyanothece sp. PCC 7425] gi|254811474|sp|B8HSJ3|MNME_CYAP4 RecName: Full=tRNA modification GTPase mnmE gi|219865637|gb|ACL45976.1| tRNA modification GTPase TrmE [Cyanothece sp. PCC 7425] Length = 460 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 150/466 (32%), Positives = 245/466 (52%), Gaps = 32/466 (6%) Query: 1 MNHEKETIFAVSTGALPS--AISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL 56 M + +TI A++T +P +I+I+RLSG + + FI ++ + S R +G Sbjct: 1 MLNPGQTIAAIATAIVPQQGSIAIVRLSGSEAVAIAQRLFIAPGQQVW---ESHRILYGY 57 Query: 57 -----DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPG 111 G+ +D+ LL++ +P S+T ED EFH HGG+ V +L+ L LA PG Sbjct: 58 VCNPRTGQRVDEALLLLMLAPRSYTKEDVVEFHCHGGMIAVQQVLQ-LCLEAGAVLAQPG 116 Query: 112 EFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSF 171 EF+ RAF +G++DL +AES+ADL+ +++ + ++ G+ G+L Q I + Sbjct: 117 EFTLRAFLHGRLDLTQAESVADLVGAKSPQAAQAALAGLQGKLIQPLQQLRRTCIDILAE 176 Query: 172 IEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAG 231 IEA +DF EED+ ++ + I +++ ++ GE++R G K+ I+G N G Sbjct: 177 IEARIDF--EEDLPPLDLNQISSQIQHSLTEVNRILATADRGELLRTGLKVAIVGRPNVG 234 Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR 291 KSSL NA ++ D AIVT++PGTTRDV+ L + G V++ DTAGIRET D VE+ G++R Sbjct: 235 KSSLLNAWSRSDRAIVTELPGTTRDVVESYLVVGGIPVQVLDTAGIRETSDQVEQIGVER 294 Query: 292 TFLEVENADLILLLKEINS------KKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL--- 342 + + ADL+LL+ + + + + + I + K DL + L Sbjct: 295 SHKAAQAADLVLLVIDAQTGWTAEDQAIYTQVQERSLILVINKIDLVDQAFQPQACLPDP 354 Query: 343 ------ISSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE-MAS 394 ++ +G+E+L + I S + + + ++R L++ LE + Sbjct: 355 ALTYLCTAAAQNQGIEDLESAILSKVQGGELEGANLDWAINQRQAAALTRAKLSLENVQE 414 Query: 395 LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LD +LR A +LG+ITG E +LD IFS+FCIGK Sbjct: 415 TIANQLPLDFWTIDLREAIRALGEITGEEVTESVLDQIFSRFCIGK 460 >gi|15605431|ref|NP_220217.1| tRNA modification GTPase TrmE [Chlamydia trachomatis D/UW-3/CX] gi|166154040|ref|YP_001654158.1| tRNA modification GTPase TrmE [Chlamydia trachomatis 434/Bu] gi|166154915|ref|YP_001653170.1| tRNA modification GTPase TrmE [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|237803128|ref|YP_002888322.1| tRNA modification GTPase TrmE [Chlamydia trachomatis B/Jali20/OT] gi|237805049|ref|YP_002889203.1| tRNA modification GTPase TrmE [Chlamydia trachomatis B/TZ1A828/OT] gi|255311527|ref|ZP_05354097.1| tRNA modification GTPase TrmE [Chlamydia trachomatis 6276] gi|255317828|ref|ZP_05359074.1| tRNA modification GTPase TrmE [Chlamydia trachomatis 6276s] gi|255349090|ref|ZP_05381097.1| tRNA modification GTPase TrmE [Chlamydia trachomatis 70] gi|255503627|ref|ZP_05382017.1| tRNA modification GTPase TrmE [Chlamydia trachomatis 70s] gi|255507306|ref|ZP_05382945.1| tRNA modification GTPase TrmE [Chlamydia trachomatis D(s)2923] gi|301335241|ref|ZP_07223485.1| tRNA modification GTPase TrmE [Chlamydia trachomatis L2tet1] gi|14195259|sp|O84704|MNME_CHLTR RecName: Full=tRNA modification GTPase mnmE gi|205829133|sp|B0B8S4|MNME_CHLT2 RecName: Full=tRNA modification GTPase mnmE gi|205829134|sp|B0BAF3|MNME_CHLTB RecName: Full=tRNA modification GTPase mnmE gi|3329152|gb|AAC68293.1| Thiophene/Furan Oxidation Protein [Chlamydia trachomatis D/UW-3/CX] gi|165930028|emb|CAP03511.1| tRNA modification GTPase [Chlamydia trachomatis 434/Bu] gi|165930903|emb|CAP06465.1| tRNA modification GTPase [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|231273349|emb|CAX10264.1| tRNA modification GTPase [Chlamydia trachomatis B/TZ1A828/OT] gi|231274362|emb|CAX11157.1| tRNA modification GTPase [Chlamydia trachomatis B/Jali20/OT] gi|289525742|emb|CBJ15223.1| tRNA modification GTPase [Chlamydia trachomatis Sweden2] gi|296435314|gb|ADH17492.1| tRNA modification GTPase TrmE [Chlamydia trachomatis E/150] gi|296436242|gb|ADH18416.1| tRNA modification GTPase TrmE [Chlamydia trachomatis G/9768] gi|296437171|gb|ADH19341.1| tRNA modification GTPase TrmE [Chlamydia trachomatis G/11222] gi|296438102|gb|ADH20263.1| tRNA modification GTPase TrmE [Chlamydia trachomatis G/11074] gi|296439031|gb|ADH21184.1| tRNA modification GTPase TrmE [Chlamydia trachomatis E/11023] gi|297140603|gb|ADH97361.1| tRNA modification GTPase TrmE [Chlamydia trachomatis G/9301] gi|297748829|gb|ADI51375.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase [Chlamydia trachomatis D-EC] gi|297749709|gb|ADI52387.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase [Chlamydia trachomatis D-LC] Length = 444 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 156/457 (34%), Positives = 237/457 (51%), Gaps = 37/457 (8%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRIL 61 +TI A++T +I+I+R+SGP + + I AS G + + Sbjct: 4 NDTITAIATPPGEGSIAIVRVSGPDAISISDRIFSGN--IAGYASHTAHLGTVSHNAVCI 61 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGI----AVVNGILEELAKMPNLRLANPGEFSRRA 117 D+ L++V +P SFTGED EF HGG +VN +L E A R A PGEFS+RA Sbjct: 62 DQALVLVMRAPRSFTGEDIVEFQCHGGYFACSQIVNALLAEGA-----RAALPGEFSQRA 116 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NGKIDL++AE++ LI+++ R++ G S + ++IE D Sbjct: 117 FLNGKIDLIQAEAIQQLIAADNIDAFRIAQNQFQGHTSQAISSISSLIIEALAYIEVLAD 176 Query: 178 FSEEE-DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 F EE+ + ++ K + + L + +++ S +G+ + G IV+ G NAGKSS+ Sbjct: 177 FPEEDIETEDSLPKHRIMEALSITDELLSSFDEGQR---LAQGTSIVLAGLPNAGKSSIL 233 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 NAL +K+ AIVTDIPGTTRD+L + L+G +++ D+AG+RET+++VEKEGI R + Sbjct: 234 NALTQKNRAIVTDIPGTTRDILEENWVLQGKNLRLIDSAGLRETENLVEKEGIARAREAM 293 Query: 297 ENADLILLLKEINSKKEISFPKNI---DFIFIGTKSDLYSTYTEEYDHL---ISSFTGEG 350 A+ IL + + S+ FP + I + K D+ S E +S+ TGEG Sbjct: 294 SQAEGILWVVDA-SQPLPEFPTILYQKPTILLWNKCDIVSPPQIEVPFQQISVSAKTGEG 352 Query: 351 LEELINKIKSILSN----KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE---KDCGLD 403 L EL ++ L+ K K+ F + + L H T + E +C Sbjct: 353 LLELKQALQKWLNTTQLGKSSKI-FLVSARHHSLLHSVYTCLTAALNGFTEHLPNEC--- 408 Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 IA +LR A S+G ++G E +L IFSKFCIGK Sbjct: 409 -IALDLRQALHSIGNLSGSEVTENVLGEIFSKFCIGK 444 >gi|34483365|emb|CAE10363.1| PUTATIVE TRNA MODIFICATION GTPASE TRME [Wolinella succinogenes] Length = 432 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 135/435 (31%), Positives = 229/435 (52%), Gaps = 17/435 (3%) Query: 20 ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGED 79 +++++LSG ++ + ++ PR A+L + + ++D+ +LI F +P S+T E+ Sbjct: 1 MAVVKLSGSRALEIALKLSRRDHLQPRHATLANLWNREDEMMDEAILIYFKAPHSYTAEE 60 Query: 80 SAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET 139 E HGG + I++E A R+A GEF+ RAF NG+IDL +AE++ LI +++ Sbjct: 61 VVEIQCHGGTLIARKIIQE-ALALGARVARAGEFTYRAFLNGRIDLSQAEAIGKLIEAKS 119 Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFL 199 + ++ ++ + GEL L I ++ E +D++EE+ + ++ ++ I + Sbjct: 120 DESYKVLLKQLKGELGRYVEGVRGSLVEILAYAEVSIDYAEEDLPSDLEAR-MVEKIERI 178 Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259 D+ K + GYK+ I+G N GKSSL NAL + AIV+DIPGTTRD + Sbjct: 179 AEDLERIYQGSKRRSSLVEGYKLAIIGRPNVGKSSLLNALLLWERAIVSDIPGTTRDTIE 238 Query: 260 IDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL--------KEINSK 311 L L + V+I DTAGIRE D +EK GI+RT L ++ +D++L L E Sbjct: 239 ESLHLGNHWVRIVDTAGIREAQDAIEKIGIERTLLALKESDMVLALFDSSQSLSPEDEQI 298 Query: 312 KEI--SFPKNIDFIFIGTKSD----LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365 KE+ + +N + + KSD L + E Y H S G+EEL++ + S L + Sbjct: 299 KELLRAHQENRRILVLFNKSDLSRELQDSELESYPHRYISAKEGGVEELLSLLASWLDEQ 358 Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDV 425 + S +R L + + L+ A + L++ A +++ A L IT + Sbjct: 359 GGGEELMLTS-ERQLLCVKSALGELKEARDRLIEGELELFAYHIQGALKELSLITRPYET 417 Query: 426 EQLLDIIFSKFCIGK 440 +LLD++F +FC+GK Sbjct: 418 SELLDVMFGQFCLGK 432 >gi|227878343|ref|ZP_03996300.1| tRNA modification GTP-binding protein TrmE [Lactobacillus crispatus JV-V01] gi|256843835|ref|ZP_05549322.1| tRNA modification GTPase TrmE [Lactobacillus crispatus 125-2-CHN] gi|256849610|ref|ZP_05555042.1| thiophene and furan oxidation protein [Lactobacillus crispatus MV-1A-US] gi|262046278|ref|ZP_06019241.1| tRNA modification GTPase TrmE [Lactobacillus crispatus MV-3A-US] gi|312984011|ref|ZP_07791359.1| tRNA modification GTPase TrmE [Lactobacillus crispatus CTV-05] gi|227862079|gb|EEJ69641.1| tRNA modification GTP-binding protein TrmE [Lactobacillus crispatus JV-V01] gi|256613740|gb|EEU18942.1| tRNA modification GTPase TrmE [Lactobacillus crispatus 125-2-CHN] gi|256713726|gb|EEU28715.1| thiophene and furan oxidation protein [Lactobacillus crispatus MV-1A-US] gi|260573608|gb|EEX30165.1| tRNA modification GTPase TrmE [Lactobacillus crispatus MV-3A-US] gi|310894513|gb|EFQ43587.1| tRNA modification GTPase TrmE [Lactobacillus crispatus CTV-05] Length = 461 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 149/461 (32%), Positives = 252/461 (54%), Gaps = 30/461 (6%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLD---G 58 E +TI A+ST ISI+R+SG ++ + + K + P ++ Y +D G Sbjct: 7 EFDTIAAISTPIGEGGISIVRMSGEDAIKIADEVFKGEDLSKVPTH-TIHYGHIIDPDTG 65 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 + +D+ ++ V +P++FT ED E + HGGI V N IL+ L R+A+PGEF++RAF Sbjct: 66 KTIDEAMVTVLRAPKTFTREDIVEINCHGGIVVTNHILQLLLSH-GARMADPGEFTKRAF 124 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG+IDL +AES+ D++ ++T+ R++++ ++G L ++ + + +E ++D+ Sbjct: 125 VNGRIDLTQAESVMDIVRAKTDKARQVAVGQLAGGLLHKIQAMRQEILNTLANVEVNIDY 184 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E D ++K++ + + + I+ + + G+I+RNG I+G N GKSSL N Sbjct: 185 PEY-DADTVTAKQMADTSRSVIDKINRLLKTAQEGKILRNGLATAIVGRPNVGKSSLLNY 243 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L + D AIVTD+ GTTRD L + ++G +++ DTAGI T+D VEK G++R+ +E Sbjct: 244 LTQSDKAIVTDVAGTTRDTLEEYVSVKGVPLELIDTAGIHHTEDKVEKIGVERSKKALER 303 Query: 299 ADLILLLKEINS------KKEISFPKNIDFIFIGTKSDL-YSTYTEEYDHLISS------ 345 ADL+LLL + + + I K+ I I KSDL T E + L S Sbjct: 304 ADLVLLLIDASQALTAEDQALIEATKDKKRIVILNKSDLGQKITTTEMEKLTGSDVISTS 363 Query: 346 ----FTGEGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE-MASLNEKD 399 + LEELINK+ + + N ++ + +++R L + + LE + E Sbjct: 364 ILKEQNLDALEELINKLFFAGIENSNDQI---MVTNQRQASLLHKAKKELEDVIQAVEDG 420 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +DI + A +LG+ITG ++L+ +FS+FC+GK Sbjct: 421 VPVDIAQIDFTGAWDTLGEITGESAPDELITQLFSQFCLGK 461 >gi|163814995|ref|ZP_02206382.1| hypothetical protein COPEUT_01148 [Coprococcus eutactus ATCC 27759] gi|158449678|gb|EDP26673.1| hypothetical protein COPEUT_01148 [Coprococcus eutactus ATCC 27759] Length = 459 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 146/465 (31%), Positives = 243/465 (52%), Gaps = 36/465 (7%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI--- 60 +++TI A++TG + + IIR+SG ++ + + + + + ++++ + G+I Sbjct: 3 KEDTIAAITTGISNAGVGIIRISGDRACEITDRVFQAENKKKKASNMKSYTAAFGKIYDG 62 Query: 61 ---LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 +D+ +L+V +P ++T ED E HGGI V+ IL+ L R A PGEF++RA Sbjct: 63 DDLIDESILLVMKAPHTYTCEDVCELQCHGGIVVLRKILD-LVLRNGARAAEPGEFTKRA 121 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F G+ID+ +AES+ LI+++ + R S++ + G L + +K+ + +FIE+ LD Sbjct: 122 FLGGRIDMSQAESVMSLINAKNDFAVRTSVDQLQGRLKNTIVNMREKILYNVAFIESALD 181 Query: 178 FSEEEDVQNFSSK--EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 E + F K +++DIL + I+ G+I+ G VI+G NAGKSSL Sbjct: 182 DPEHYSLDGFPDKLRMIIDDILI---QVEGLINTFDNGKILSEGINTVIVGKPNAGKSSL 238 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N +D AIVTD+ GTTRD L+ +++ G + I DTAGIRETDD+VEK G+ + Sbjct: 239 LNMFVGEDRAIVTDMAGTTRDTLSEIVNVRGITLNIIDTAGIRETDDLVEKIGVDKAIKS 298 Query: 296 VENADLILLLK------EINSKKEISFPKNIDFIFIGTKSDL--------YSTYTEEYDH 341 V+ ADL+L + + N ++ I ++ + I I KSDL Y + Sbjct: 299 VDKADLVLYVVDGSVELDENDQRIIEKIRDKNVIVIINKSDLEIKIERDAICRYIDAEVI 358 Query: 342 LISSFTGEGLEELINKIKSIL---SNKFK-KLPFSIPSHKRHLYHLSQTVRYLEMASLNE 397 +S+ TG+G EEL + + + S + +L + HK L ++ + + Sbjct: 359 QLSAMTGDGSEELYDMLNKMFFEGSLSYNDQLYITNARHKNELVCTKNALKKV----IES 414 Query: 398 KDCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D G+ D + ++ A LG I G + L D IF FC+GK Sbjct: 415 IDMGMEEDFFSIDMMDAYEHLGLIIGETARDDLADKIFKDFCMGK 459 >gi|46445656|ref|YP_007021.1| tRNA modification GTPase TrmE [Candidatus Protochlamydia amoebophila UWE25] gi|81829092|sp|Q6MFA3|MNME_PARUW RecName: Full=tRNA modification GTPase mnmE gi|46399297|emb|CAF22746.1| probable GTP-binding protein in thiophene and furan oxidation [Candidatus Protochlamydia amoebophila UWE25] Length = 458 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 154/452 (34%), Positives = 236/452 (52%), Gaps = 22/452 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRY--FFGLDGRILDK 63 ETI A++T ++IIR+SG +V I R + Y + G +D Sbjct: 12 ETIAAIATPPGEGGVAIIRISGDQSLEVAAKIFSGPIFSYRSHTAHYGQIYNSSGEHVDD 71 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 L+++ S+TGE++ E H HGG + +LE + R A PGEF+ +A+ NGKI Sbjct: 72 VLVLIMLGKRSYTGENTVEIHCHGGSLITRKVLE-VVLAAGARAALPGEFTFKAYMNGKI 130 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL +AE++ +LI ++ E + + G LS+ + LT I + +EA +DF EE Sbjct: 131 DLAQAEAVQELICAKNEKALGAAESQLKGSLSNRVLAFQSTLTQIAAILEAWVDFPEE-G 189 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 ++ + E+ D+ D+ ++ G+I+ +G I ++G N GKSSL NAL KD Sbjct: 190 LEFATMDELDQDLERTAKDMEKLVNSFHNGKILHDGLSICLIGCPNVGKSSLMNALLDKD 249 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303 AIV+ IPGTTRDVL L L G +K+SDTAGIRE ++ VE+EGI+R+ ++ ADLIL Sbjct: 250 RAIVSPIPGTTRDVLEDHLRLNGLHIKLSDTAGIREANESVEQEGIRRSKKAMQEADLIL 309 Query: 304 LLKEINS---KKEISFPKNIDF---IFIGTKSDLYSTYTE--EYDHLISSFTGE--GLEE 353 L+ + + K++ K + F I I K DL E L+ E GLEE Sbjct: 310 LVLDAHKGLEKEDQELLKQVPFHKTIVIWNKIDLNPRNLPCLEVPFLVHLSAKEKIGLEE 369 Query: 354 LINKIKSILSNKFKKLPFS----IPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAEN 408 L I +I+ ++ P S + ++ RH L +++ L + + + + Sbjct: 370 LHQTIDTII---WQDGPPSKEEILITNVRHKEALIESIESLRRVKIGLRHQVSPEFLTLD 426 Query: 409 LRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +R + + LGKI G E +L IFSKFCIGK Sbjct: 427 MRQSLLELGKIIGTNISEDILSAIFSKFCIGK 458 >gi|295693883|ref|YP_003602493.1| tRNA modification GTPase mnme [Lactobacillus crispatus ST1] gi|295031989|emb|CBL51468.1| tRNA modification GTPase mnmE [Lactobacillus crispatus ST1] Length = 461 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 149/461 (32%), Positives = 252/461 (54%), Gaps = 30/461 (6%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLD---G 58 E +TI A+ST ISI+R+SG ++ + + K + P ++ Y +D G Sbjct: 7 EFDTIAAISTPIGEGGISIVRMSGEDAIKIADEVFKGEDLSKVPTH-TIHYGHIIDPDTG 65 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 + +D+ ++ V +P++FT ED E + HGGI V N IL+ L R+A+PGEF++RAF Sbjct: 66 KTIDEAMVTVLRAPKTFTREDIVEINCHGGIVVTNHILQLLLSH-GARMADPGEFTKRAF 124 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG+IDL +AES+ D++ ++T+ R++++ ++G L ++ + + +E ++D+ Sbjct: 125 VNGRIDLTQAESVMDIVRAKTDKARQVAIGQLAGGLLHKIQAMRQEILNTLANVEVNIDY 184 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E D ++K++ + + + I+ + + G+I+RNG I+G N GKSSL N Sbjct: 185 PEY-DADTVTAKQMADTSRSVIDKINRLLKTAQEGKILRNGLATAIVGRPNVGKSSLLNY 243 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L + D AIVTD+ GTTRD L + ++G +++ DTAGI T+D VEK G++R+ +E Sbjct: 244 LTQSDKAIVTDVAGTTRDTLEEYVSVKGVPLELIDTAGIHHTEDKVEKIGVERSKKALER 303 Query: 299 ADLILLLKEINS------KKEISFPKNIDFIFIGTKSDL-YSTYTEEYDHLISS------ 345 ADL+LLL + + + I K+ I I KSDL T E + L S Sbjct: 304 ADLVLLLIDASQALTAEDQALIEATKDKKRIVILNKSDLGQKITTTEMEKLTGSDVISTS 363 Query: 346 ----FTGEGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE-MASLNEKD 399 + LEELINK+ + + N ++ + +++R L + + LE + E Sbjct: 364 ILKEQNLDALEELINKLFFAGIENSNDQI---MVTNQRQASLLHKAKKELEDVIQAVEDG 420 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +DI + A +LG+ITG ++L+ +FS+FC+GK Sbjct: 421 VPVDIAQIDFTGAWDTLGEITGESAPDELITQLFSQFCLGK 461 >gi|238926048|ref|YP_002939566.1| tRNA modification GTPase TrmE [Eubacterium rectale ATCC 33656] gi|238877725|gb|ACR77432.1| tRNA modification GTPase TrmE [Eubacterium rectale ATCC 33656] Length = 458 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 156/462 (33%), Positives = 248/462 (53%), Gaps = 30/462 (6%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-----RKASLRYFFGLDG 58 + +TI A++T PS I IIR+SG V + I K K + ++ Y F DG Sbjct: 2 QNDTIAAIATAMSPSGIGIIRISGDDALSVIDRIYKSKNNKKKISACQSHTIHYGFIYDG 61 Query: 59 -RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 +D+ ++++ +P ++T ED+ E HGG+ V+ +LE + K R A PGEF++RA Sbjct: 62 DEKIDEVMVLLMKAPNTYTREDTVEIDCHGGVYVMKRVLEAVIK-NGARPAEPGEFTKRA 120 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NG+IDL +AES+ D+I+S+ + + S+ + G + Q ++L H +FIE+ LD Sbjct: 121 FLNGRIDLSQAESVIDVINSKNDFALKSSLSQLGGAVLGSIRQIREQLLHEIAFIESALD 180 Query: 178 FSEEEDVQNFSSK-EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 E + + K + D +++ I + G I++ G VI+G NAGKSSL Sbjct: 181 DPEHISLDGYPQKLRAIVDNEYME--IDGLLKTSDNGRILKEGINTVIIGKPNAGKSSLL 238 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N L D AIVTDI GTTRDVL +++ G + + DTAGIR T+D+VEK G+K+ Sbjct: 239 NVLVGTDRAIVTDIAGTTRDVLEEQINIGGITLNLVDTAGIRSTEDVVEKIGVKKAMEHA 298 Query: 297 ENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEE-----YDHLISS 345 ADLI+ + + N I+F K+ + + KSDL S + + D + S Sbjct: 299 NGADLIIYVVDSSVALDDNDYDIINFIKDKKAVILLNKSDLASKVSADDIKKLVDKTVIS 358 Query: 346 FTGE---GLEELINKIKSILSN---KFK-KLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398 + + G++EL + IK + + F ++ + HK+ L ++++ L M S+++ Sbjct: 359 VSAKESSGIDELSDTIKEMFFDGEVSFNDEIYITNIRHKKLLSDAKESLK-LVMNSIDD- 416 Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D D + +L A SLG I G + L+D IFSKFC+GK Sbjct: 417 DMPEDFYSIDLMSAYESLGLIIGESVEDDLMDEIFSKFCMGK 458 >gi|160893418|ref|ZP_02074203.1| hypothetical protein CLOL250_00967 [Clostridium sp. L2-50] gi|156864813|gb|EDO58244.1| hypothetical protein CLOL250_00967 [Clostridium sp. L2-50] Length = 459 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 149/466 (31%), Positives = 247/466 (53%), Gaps = 42/466 (9%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI----- 60 +TI A++TG + + IIR+SG + +V + + + S++ + G++ Sbjct: 5 DTIAAIATGMGNAGVGIIRISGKNAVEVASKVFRPANKEKKIESMKSYTAAFGQVYDGDK 64 Query: 61 -LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 LD+G+L++ +P ++T ED E HGG+ V+ +L + K RLA PGEF++RAF Sbjct: 65 ELDEGILLLMRAPHTYTCEDVCELQCHGGMVVLRNVLAAVIK-NGARLAEPGEFTKRAFL 123 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NG+IDL +AES+ DLIS++ + + S+ + G+L + +++ + +FIE+ LD Sbjct: 124 NGRIDLSQAESVMDLISAKNDFAVKSSLMQLRGDLKNQIIDMREQILYNVAFIESALDDP 183 Query: 180 EEEDVQNFSSKEVLNDIL-FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E + + K L I+ L +++ + G I++ G K VI+G NAGKSSL N Sbjct: 184 EHYSLDGYPQK--LQTIVDKLGDNVDKLLRTFDNGRILKEGIKTVIVGKPNAGKSSLLNM 241 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 ++ AIVTDI GTTRD L +++ G ++ I DTAGIR+T+DIVEK G+ + Sbjct: 242 FLGENRAIVTDIAGTTRDTLEEVVNINGIILNIVDTAGIRDTEDIVEKMGVDKALEFASQ 301 Query: 299 ADLILLL------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL--------IS 344 ADLIL + + N K+ IS K + I + K+DL + + + +S Sbjct: 302 ADLILYVIDGSVPLDDNDKQIISEIKGKNVIAVMNKNDLQTVVDKMWITCELGCDIVELS 361 Query: 345 SFTGEGLEELINKIKSILSNKF--------KKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396 + TG+G E+L + +L++KF +L + HK L +++ + + Sbjct: 362 ASTGDGKEKLYD----LLNDKFFSGELDYNDQLYITNARHKEELMKTEESLLKVRESI-- 415 Query: 397 EKDCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D G+ D + +L A LG I G + + L D IF +FC+GK Sbjct: 416 --DMGMEEDFFSIDLMDAYEHLGLIIGETNRDDLADKIFEEFCMGK 459 >gi|171913044|ref|ZP_02928514.1| putative tRNA modification GTPase [Verrucomicrobium spinosum DSM 4136] Length = 451 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 149/455 (32%), Positives = 231/455 (50%), Gaps = 26/455 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF----PRKASLRYFFGLDGRIL 61 +TI A+ST +AIS++RLSG QV + + K K+ PR +G ++ Sbjct: 3 DTIAAISTAFGEAAISVLRLSGEHALQVAQRVFKGKRVLEALEPRVQHFGNILDEEGAVV 62 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121 D LL F +P S+TGED E HGGI V I E L R A GEF++RAF NG Sbjct: 63 DSVLLSHFRAPASYTGEDVVEISCHGGILVTRRIFE-LLMHHGARAAEAGEFTQRAFVNG 121 Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSS----LYGQWIDKLTHIRSFIEADLD 177 K+DL +AE++ DLI +++EM + + + + G L L I+ L H+ ++I D Sbjct: 122 KMDLTQAEAVMDLIHAQSEMALKAATQQLEGRLGKESEHLRADLIELLAHVEAYI----D 177 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 F +E D+ + + + + + S + G I+R+G + VI G N GKSSL N Sbjct: 178 FPDE-DIDPDTGAAMQKRLASIHLRVGSLLDTAHHGRILRSGARTVICGEPNVGKSSLLN 236 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 L+ D AIV+ GTTRD + L + G + DTAGIRE +E+ GI RT E+ Sbjct: 237 LLSGFDRAIVSAEAGTTRDTIEEVLHIHGLPFVLVDTAGIREGAGSIEQSGIDRTNREMA 296 Query: 298 NADLIL-----LLKEINSKKEISFPKNIDFIFIGTKSD--LYSTYTEEYDH---LISSFT 347 AD+IL L +++ ++ I KSD L+ ++ + + L+S Sbjct: 297 RADVILEVVDGSLPRDAARRVPGLEDRRGYLLILNKSDLGLHPSWLPDVERGAILLSCEN 356 Query: 348 GEGLEELINKIK-SILSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGLDII 405 EGL+ L ++ ++ + + + RH + L A+ ++ + + Sbjct: 357 QEGLDPLRAAMRDAVWTGAGAGNSQMVAINARHQACFQRAAESLVHGAAALKRGEAPEFV 416 Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A LR A ++G++TG VDVE++L IFS+FCIGK Sbjct: 417 AVFLREAMEAVGEVTGRVDVEEILGAIFSRFCIGK 451 >gi|253581093|ref|ZP_04858353.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251847629|gb|EES75599.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 474 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 156/460 (33%), Positives = 245/460 (53%), Gaps = 32/460 (6%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK------KPFPRKASLRYFFGLDGR- 59 TI A+ST S I IIR+SG + V I + K K P ++ Y + DG Sbjct: 21 TIAAISTAMSASGIGIIRISGENAMDVISRIYRSKGGKKKIKEVPTH-TIHYGYIYDGEE 79 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 ++D+ L+++ +P +FTGED+ E HGG+ + +L+ + K +A PGEF++RAF Sbjct: 80 LIDEVLVMIMHAPRTFTGEDTVEIDCHGGVYAMQRVLDTVLK-NGAEIAEPGEFTKRAFL 138 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NG++DL +AE++ D+I ++ E R SM+ + G + +KL + ++IE+ LD Sbjct: 139 NGRMDLSQAEAVMDVIQAKNEYALRSSMDQLRGSVQKAIRDIREKLIYHIAYIESALDDP 198 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 E + + +E+L + + ++ + G++I+ G + VILG NAGKSSL N L Sbjct: 199 EHISLDGYP-QELLEVVDNEQKEVKRLLKTSSDGKMIQEGIQTVILGKPNAGKSSLLNLL 257 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 ++ AIVTDI GTTRD+L + L G +KI DTAGIRET DIVEK G+ R + A Sbjct: 258 IGENRAIVTDIAGTTRDILEEYITLHGISLKIIDTAGIRETKDIVEKIGVDRAREMAQKA 317 Query: 300 DLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLY-----STYTEEYDH---LISS 345 DLIL + + N ++ + I + K+DL E+ H IS+ Sbjct: 318 DLILYVVDSSVPLDENDEEIMEMLTGKKAIILYNKTDLQPEIQPEILKEKTGHPVIPISA 377 Query: 346 FTGEGLEELINKIKSILSNKFKKLPFS---IPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402 +G+ EL +IK + ++ F+ ++ RH L + R L++ N + G+ Sbjct: 378 KEEKGITELEEQIKDMFFG--GEISFNDEVYITNARHKAALEEADRSLDLVR-NSIEMGM 434 Query: 403 --DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D + +L A +LGKI G E L++ IFSKFC+GK Sbjct: 435 PEDFFSIDLMNAYENLGKILGESVGEDLVNEIFSKFCMGK 474 >gi|312897434|ref|ZP_07756858.1| tRNA modification GTPase TrmE [Megasphaera micronuciformis F0359] gi|310621495|gb|EFQ05031.1| tRNA modification GTPase TrmE [Megasphaera micronuciformis F0359] Length = 459 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 153/456 (33%), Positives = 233/456 (51%), Gaps = 26/456 (5%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL----DGRI 60 TI A++T S + IIR+SG + + E F K K F FG GR Sbjct: 8 TIAAIATATGESGVGIIRISGTEAYNIGEKIFRSKGKTRFKDFKDRTIHFGTIVDEKGRE 67 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+ L+++ P S+T ED E HGG V+GIL+ L RLA GEF++RAF N Sbjct: 68 IDEALVLIMKRPHSYTAEDVLEIQCHGGRQSVSGILK-LVLRSGARLARAGEFTQRAFMN 126 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G+IDL++AE++ D+I +++ ++ + G LS + +LT + +E +D+ E Sbjct: 127 GRIDLVQAEAVMDVIQAKSSKGLSTALSQLEGRLSGIVAAMRTELTDFITRLEVTVDYPE 186 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E D+++ ++ + + + + G IIR+G + I G NAGKSSL N L Sbjct: 187 E-DLEDIVVHDLEKTMRCMMERMEQMLKDSSKGRIIRDGMTVAIAGAPNAGKSSLLNYLL 245 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 +D AIVTDIPGTTRD L + ++G ++ DTAGIRET D VE G+ + +E AD Sbjct: 246 AEDRAIVTDIPGTTRDALEEWVSIQGIPFRLVDTAGIRETTDTVEAIGVTKARNYIETAD 305 Query: 301 LILLLKE-----INSKKEI--SFPKNIDFIFIGTKSDLYSTYT----EEYD---HLISSF 346 +L+LK+ + K + S P I + TKSDL E Y +SS Sbjct: 306 TVLILKDRTQPFSDEDKALINSVPDGKGAIVL-TKSDLKPLLECKDLEVYGLPVFSLSSK 364 Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL--DI 404 TG+G+ L + S + S+ RH+ + Q++ L+ A G+ D+ Sbjct: 365 TGDGISLLEEYLVSRSGESGAGENEVLLSNMRHIELMRQSLNALKRAE-ETMYAGMPTDL 423 Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 I +LR A LG +TG + ++ IFS+FC+GK Sbjct: 424 ILVDLREAWELLGAVTGETVQDDMVGEIFSRFCLGK 459 >gi|227543714|ref|ZP_03973763.1| tRNA modification GTP-binding protein TrmE [Lactobacillus reuteri CF48-3A] gi|300908779|ref|ZP_07126242.1| tRNA modification GTPase TrmE [Lactobacillus reuteri SD2112] gi|227186282|gb|EEI66353.1| tRNA modification GTP-binding protein TrmE [Lactobacillus reuteri CF48-3A] gi|300894186|gb|EFK87544.1| tRNA modification GTPase TrmE [Lactobacillus reuteri SD2112] Length = 477 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 149/465 (32%), Positives = 252/465 (54%), Gaps = 31/465 (6%) Query: 2 NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD-- 57 N E +TI A+ST ISIIR+SG +V + I K K + A+ +G +D Sbjct: 18 NSENDTIAAISTPVGEGGISIIRISGDDAVKVAQRIYKGKD-LAKVATHTINYGHIVDPD 76 Query: 58 -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 + +D+ ++ V +P ++T ED E + HGG+ N IL+ L R+A PGEF++R Sbjct: 77 TDQEVDEVMVSVMRAPHTYTREDVIEINCHGGLLATNRILQ-LVLSFGARMAEPGEFTKR 135 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NG++DL ++E++ DLI ++T+ ++++ + G+LS L + + + +E ++ Sbjct: 136 AFLNGRLDLSQSEAVMDLIRAKTDKSMKVALNQLDGDLSRLIRNLRQDILDVLAQVEVNI 195 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D+ E + V+ ++K + ++ I + K G+++R+G I+G N GKSSL Sbjct: 196 DYPEYDAVEEMTTKLLKEKAEDIQQRIQGLLKTAKQGKVLRDGLATAIIGQPNVGKSSLL 255 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N+L +D AIVT++ GTTRDV+ +++ G +K+ DTAGIR+T+D VEK G++R+ + Sbjct: 256 NSLLHEDKAIVTNVAGTTRDVIEEYVNVNGVPLKLIDTAGIRDTNDQVEKIGVERSRKAL 315 Query: 297 ENADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDL-YSTYTEEYDHL----- 342 ADL+LLL I+S E++ K+ I I K+DL EE L Sbjct: 316 GAADLVLLL--IDSSNELTDEDRQLLEATKDKQRIIILNKTDLPRKVDLEELKSLAGKSA 373 Query: 343 ---ISSFTGEGLEELINKIKSILSNKF--KKLPFSIPSHKRHLYHLSQTVRYLE--MASL 395 S EG+++L +I + NK + ++ RH+ L Q L + + Sbjct: 374 VIETSIVNHEGMDQLGEQIGHMFFNKGIESNQNNVMVTNARHIGLLHQANDALSDVLKGI 433 Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 N+ +D++ ++ LG+ITG ++LLD +FS+FC+GK Sbjct: 434 NDG-MPVDLVQIDMTRCWELLGEITGDSYQDELLDQLFSQFCLGK 477 >gi|150024725|ref|YP_001295551.1| tRNA modification GTPase TrmE [Flavobacterium psychrophilum JIP02/86] gi|205829151|sp|A6GXB2|MNME_FLAPJ RecName: Full=tRNA modification GTPase mnmE gi|149771266|emb|CAL42735.1| tRNA modification GTPase TrmE [Flavobacterium psychrophilum JIP02/86] Length = 462 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 156/466 (33%), Positives = 252/466 (54%), Gaps = 39/466 (8%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFG--LDG-RI 60 +TI A++T + AI++IR+SG + + F K ++ S G DG ++ Sbjct: 5 DTIVALATPSGAGAIAVIRISGNNAITIASEVFQSVSGKDITKQKSHTLHLGHITDGTKV 64 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+ LL +F S+TGE++ E HG + I++ L + R+A GEF+ R+F N Sbjct: 65 LDQVLLSIFKGTNSYTGENTIEISCHGSTYIQQQIIQLLLR-KGCRMAQAGEFTLRSFLN 123 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GK+DL +AE++ADLISS+ E +++M+ M G S+ + ++L + S IE +LDF+E Sbjct: 124 GKMDLSQAEAVADLISSDNEAAHQIAMQQMRGGFSNEIAKLREELLNFASLIELELDFAE 183 Query: 181 EEDVQNFSSKEVLNDIL-----FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 E DV+ F+ + +D+L LK I S +G +I+NG + I+G N GKS+L Sbjct: 184 E-DVE-FADRTQFDDLLNRIEFVLKRLIDSF----AVGNVIKNGIPVAIVGEPNVGKSTL 237 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N L ++ AIV++I GTTRD + +L + G + DTAGIRET D+VE GIK+TF + Sbjct: 238 LNTLLNEERAIVSEIAGTTRDTIEDELVIGGIGFRFIDTAGIRETKDVVESIGIKKTFEK 297 Query: 296 VENADLILL-------------LKEINSKKEISFPKNIDFIFIGTKSD-LYSTYTEEYDH 341 +E + +++ LK K + FP I IG KSD L T + Sbjct: 298 IEQSQVVVFLFDSSEFKISGLKLKVALEKIKNQFPLK-PLIIIGNKSDKLSETEIQNIKT 356 Query: 342 ------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL 395 LIS+ G+E+L N++ S ++ + +I ++ RH L + + ++ Sbjct: 357 EIPEILLISAKEKLGVEDLKNQLLSFVNTGALRNNQTIVTNTRHYDSLLKALDEIQKVKF 416 Query: 396 N-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + + D++A +++ A G+ITG V ++LL IF+ FCIGK Sbjct: 417 GLQTNLPSDLMAIDIKQALYYFGEITGQVTNDELLGNIFANFCIGK 462 >gi|291539801|emb|CBL12912.1| tRNA modification GTPase trmE [Roseburia intestinalis XB6B4] Length = 457 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 157/461 (34%), Positives = 247/461 (53%), Gaps = 33/461 (7%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFI-----CKKKKPFPRKASLRYFFGLDG-R 59 +TI A++T S I IIR+SG + + I KK P ++ Y DG Sbjct: 4 DTIAAIATAMSSSGIGIIRISGDEAVGIVDRIFSMKNGKKLSDMPTH-TIHYGHIKDGDE 62 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 ++D+ ++++ +P+S+T ED+ E HGG+ V+ +LE + K R A PGEF++RAF Sbjct: 63 VIDEVMVVLMRAPKSYTKEDTVEIDCHGGVYVMKRVLETVIKY-GARPAEPGEFTKRAFL 121 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NG+IDL +AES+ D+I ++ E + S + +SG LS+ + +KL H +FIE+ LD Sbjct: 122 NGRIDLAQAESVIDIIHAKNEFALKSSEQQLSGSLSAAVRKVREKLLHEIAFIESALDDP 181 Query: 180 EEEDVQNFSSKEVLNDILF-LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E + + E L+ I+ + +I ++ G+I++ G VI+G NAGKSSL N Sbjct: 182 EHISLDGYP--ETLHGIVEEAQKEIQKLLANSDNGKILKEGISTVIIGKPNAGKSSLLNT 239 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L ++ AIVTDI GTTRDVL ++L G ++ + DTAGIRETDD+VEK G+ R + Sbjct: 240 LVGEERAIVTDIAGTTRDVLEEQINLNGIILNVIDTAGIRETDDVVEKIGVDRAKKYLNE 299 Query: 299 ADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEE--YDHL------IS 344 ADL + + + +++ + + K+ I + KSDL E HL IS Sbjct: 300 ADLAIYVVDTSTQLDENDFEIMELLKDRKAIVLLNKSDLTPVTDSESIRKHLDKKMIAIS 359 Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFS---IPSHKRHLYHLSQTVRYLEMASLNEKDCG 401 + G+EEL I+ + ++ F+ ++ RH L + L + + D G Sbjct: 360 AKEQTGIEELEETIREMFFT--GEVTFNDEVYITNIRHKTALQEARNSLNLVVQSILD-G 416 Query: 402 L--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + D + +L A LG I G + L++ IFSKFC+GK Sbjct: 417 MPEDFYSIDLMNAYEELGSIVGEAVEDDLVNEIFSKFCMGK 457 >gi|293380887|ref|ZP_06626923.1| tRNA modification GTPase TrmE [Lactobacillus crispatus 214-1] gi|290922560|gb|EFD99526.1| tRNA modification GTPase TrmE [Lactobacillus crispatus 214-1] Length = 461 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 149/461 (32%), Positives = 252/461 (54%), Gaps = 30/461 (6%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLD---G 58 E +TI A+ST ISI+R+SG ++ + + K + P ++ Y +D G Sbjct: 7 EFDTIAAISTPIGEGGISIVRMSGEDAIKIADEVFKGEDLSKVPTH-TIHYGHIIDPDTG 65 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 + +D+ ++ V +P++FT ED E + HGGI V N IL+ L R+A+PGEF++RAF Sbjct: 66 KTIDEAMVTVLRAPKTFTREDIVEINCHGGIVVTNHILQLLLSH-GARMADPGEFTKRAF 124 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG+IDL +AES+ D++ ++T+ R++++ ++G L ++ + + +E ++D+ Sbjct: 125 VNGRIDLTQAESVMDIVRAKTDKARQVAIGQLAGGLLHKIQAMRQEILNTLANVEVNIDY 184 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E D ++K++ + + + I+ + + G+I+RNG I+G N GKSSL N Sbjct: 185 PEY-DADTVTAKQMADTSKSVIDKINRLLKTAQEGKILRNGLATAIVGRPNVGKSSLLNY 243 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L + D AIVTD+ GTTRD L + ++G +++ DTAGI T+D VEK G++R+ +E Sbjct: 244 LTQSDKAIVTDVAGTTRDTLEEYVSVKGVPLELIDTAGIHHTEDKVEKIGVERSKKALER 303 Query: 299 ADLILLLKEINS------KKEISFPKNIDFIFIGTKSDL-YSTYTEEYDHLISS------ 345 ADL+LLL + + + I K+ I I KSDL T E + L S Sbjct: 304 ADLVLLLIDASQALTAEDQALIEATKDKKRIVILNKSDLGQKITTTEMEKLTGSDVISTS 363 Query: 346 ----FTGEGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE-MASLNEKD 399 + LEELINK+ + + N ++ + +++R L + + LE + E Sbjct: 364 ILKEQNLDALEELINKLFFAGIENSNDQI---MVTNQRQASLLHKAKKELEDVIQAVEDG 420 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +DI + A +LG+ITG ++L+ +FS+FC+GK Sbjct: 421 VPVDIAQIDFTGAWDTLGEITGESAPDELITQLFSQFCLGK 461 >gi|253563506|ref|ZP_04840963.1| tRNA modification GTPase mnmE [Bacteroides sp. 3_2_5] gi|251947282|gb|EES87564.1| tRNA modification GTPase mnmE [Bacteroides sp. 3_2_5] Length = 465 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 154/475 (32%), Positives = 255/475 (53%), Gaps = 51/475 (10%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFI---CKKKKPFPRKASLRYFFG--LDGR 59 ++TI A++T A AI IR+SGP + I K K + FG +G Sbjct: 3 QDTICAIAT-AQGGAIGSIRVSGPEAITITSRIFTPAKSGKLLSEQKPYTLTFGRIYNGE 61 Query: 60 -ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 ++D+ L+ +F +P S+TGEDS E HG ++ +++ L K R+A PGE+++RAF Sbjct: 62 EMIDEVLVSLFRAPHSYTGEDSTEITCHGSSYILQQVMQLLIK-NGCRMAQPGEYTQRAF 120 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NGK+DL +AE++ADLI+S + RL++ M G S +KL + S IE +LDF Sbjct: 121 LNGKMDLSQAEAVADLIASSSAATHRLALSQMRGGFSKELTTLREKLLNFTSMIELELDF 180 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQG-KLGEIIRNGYKIVILGHSNAGKSSLFN 237 SEE DV+ F+ + L + ++ + ++ +G +I+NG + I+G +NAGKS+L N Sbjct: 181 SEE-DVE-FADRSALRRLADEIEEVIARLANSFSVGNVIKNGVPVAIIGETNAGKSTLLN 238 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 L +D AIV+DI GTTRDV+ +++ G + DTAGIRET D +E GI+RTF +++ Sbjct: 239 VLLNEDKAIVSDIHGTTRDVIEDTVNIGGITFRFIDTAGIRETSDTIESLGIERTFQKLD 298 Query: 298 NADLILLLKEINSKKEIS---------FPK--NIDFIFIGTKSDLYSTYTEEYDHLISSF 346 A+++L + I+S IS P+ + I + K +L + + + L S F Sbjct: 299 QAEIVLWM--IDSADAISQLTLLSDKILPRCEHKQLILVFNKVELINET--QKNELASQF 354 Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHK----RHLYHLSQ------TVRYLE----- 391 + E + ++I+SI + ++L + HL ++Q +R+ E Sbjct: 355 S----EHIGSEIESIFISAKQRLHTDELQQRLVAAAHLPTVTQNDVIVTNIRHYEALTRA 410 Query: 392 MASLNEKDCGLDI------IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + +++ GLD+ +++++R L I G V + +L IF+ FCIGK Sbjct: 411 LDAIHRVQEGLDVNISGDFLSQDIRECIFHLSDIAGEVTNDMVLQNIFAHFCIGK 465 >gi|94971754|ref|YP_593802.1| tRNA modification GTPase TrmE [Candidatus Koribacter versatilis Ellin345] gi|205829050|sp|Q1IHC2|MNME_ACIBL RecName: Full=tRNA modification GTPase mnmE gi|94553804|gb|ABF43728.1| tRNA modification GTPase trmE [Candidatus Koribacter versatilis Ellin345] Length = 454 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 142/452 (31%), Positives = 241/452 (53%), Gaps = 19/452 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD---GRI 60 +TI A++T I ++RL+GP V + + + R F +D G Sbjct: 5 DTIVAIATPPGRGGIGVVRLAGPEARTVALLMLRLANGKAELEAQRAHFAELVDPESGER 64 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+ ++ F P S+T +D E HG ++ ++E LA +R+A+PGEF+ RAF N Sbjct: 65 LDEVVVAYFAKPHSYTTDDIVEISCHGSPVLLARVVE-LALAKGVRMADPGEFTMRAFLN 123 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G+IDL +AE++ DLI S+T Q R++ + + G +S KL ++ + +EA +DF++ Sbjct: 124 GRIDLTQAEAVRDLIESQTLYQARVAAQQLGGSVSRRLQPTKQKLVNLIAVLEAGIDFAD 183 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 + DV +KE + I + ++ G+++ G + I+G N GKSSLFN L Sbjct: 184 D-DVSVLPAKEAIARIAEVHEPLAKLKEGFAFGKVVHEGLTLAIVGRPNVGKSSLFNRLV 242 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++D AIVT IPGTTRD++T + L G V + DTAGIRE+ D E GI+++ + +AD Sbjct: 243 ERDRAIVTAIPGTTRDLVTETVSLGGIPVHLVDTAGIRESHDEAESIGIQKSREAMADAD 302 Query: 301 LILLLKEINSK-------KEISFPKNIDFIFIGTKSDL--YSTYTEEYDHLI--SSFTGE 349 L+L++ + +++ + IS I + K DL +S + ++ S+ +GE Sbjct: 303 LVLVVVDAHAETGHELDHQLISAAAERSAILVENKIDLGRHSVANGKSIPVVRTSAVSGE 362 Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS-LNEKDCGLDIIAEN 408 G+ EL +I ++S + + ++ R ++ ++ LE A+ E +++ + Sbjct: 363 GIAELREQILRMVSGESGREESGFLTNIRQHQLVTDSLAALEAATNALEVRVPHEMVLMD 422 Query: 409 LRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L A L ITG + +L++IFS FCIGK Sbjct: 423 LYNALRPLDDITGATTADDILNLIFSTFCIGK 454 >gi|317476897|ref|ZP_07936140.1| tRNA modification GTPase TrmE [Bacteroides eggerthii 1_2_48FAA] gi|316907072|gb|EFV28783.1| tRNA modification GTPase TrmE [Bacteroides eggerthii 1_2_48FAA] Length = 461 Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 149/469 (31%), Positives = 250/469 (53%), Gaps = 43/469 (9%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI---- 60 ++TI A++T A AI IR+SGP ++ I R + + GRI Sbjct: 3 QDTICAIAT-AQGGAIGCIRVSGPEAIEITSRIFTPAISNKRLEESKPYTLTFGRIHEGS 61 Query: 61 --LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 +D+ L+ +F +P S+TGE+S E HG ++ +L+ L K R+A PGE+++RAF Sbjct: 62 EIIDEVLVSLFRAPHSYTGENSTEITCHGSAYILQKVLQLLIK-NGCRMAQPGEYTQRAF 120 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NGK+DL +AE++ADLI+S + RL+M M G S ++L H S IE +LDF Sbjct: 121 LNGKMDLSQAEAVADLIASSSAATHRLAMSQMRGGFSKELTTLRNQLLHFTSLIELELDF 180 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHI----SQGKLGEIIRNGYKIVILGHSNAGKSS 234 S+ E+++ F+ + +++ L ++I I + +G I+NG + I+G +NAGKS+ Sbjct: 181 SDHEELE-FADR---SELCLLADNIEKVIVRLVNSFSVGNAIKNGVPVAIIGETNAGKST 236 Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294 L N L ++ AIV+DI GTTRDV+ +++ G + DTAGIRET+D +E GI+RTF Sbjct: 237 LLNVLLNEEKAIVSDIHGTTRDVIEDTVNIGGITFRFIDTAGIRETNDTIESLGIERTFQ 296 Query: 295 EVENADLIL-LLKEINSKKEIS------FP--KNIDFIFIGTKSDLYSTYTEEYDH---- 341 +++ A+++L ++ N++ +I+ P + I + K DL + + Sbjct: 297 KLDQAEIVLWMIDATNAQTQITQLSSQLLPRCRAKQLILVYNKVDLVANIQNDIPTNFPD 356 Query: 342 -----LISSFTGEGLEELINKIKSILSNKFKKLPFS--IPSHKRHLYHLS---QTVRYLE 391 +IS+ E +EEL + I S + + I ++ RH L+ + + ++ Sbjct: 357 DVKSIVISAKKREHIEELQQML--ITSAHLPTITQNDVIVTNVRHYEALNNALEAIHRVQ 414 Query: 392 MASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +N + D +++++R L I G V + +L IF FCIGK Sbjct: 415 EGLVN--NLSGDFVSQDIRECIFHLSDIAGEVTNDMVLHNIFQHFCIGK 461 >gi|325685111|gb|EGD27242.1| tRNA modification GTPase TrmE [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 461 Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 154/465 (33%), Positives = 258/465 (55%), Gaps = 38/465 (8%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLD---G 58 E +TI A+ST ISI+R+SG + + K + + P ++ Y +D G Sbjct: 7 EFDTIAAISTPLGEGGISIVRVSGEDAAAIVNRLFKGEDLEKVPSH-TINYGHIVDPATG 65 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 +++D+ + V +P++FT ED E + HGGI V N IL+ L R+A+PGEF++RAF Sbjct: 66 QVIDEVMASVMLAPKTFTKEDIVEINCHGGIVVTNDILQ-LLLANGARMADPGEFTKRAF 124 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFIEA 174 NG+IDL +AES+ D+I ++T+ R+++++ +SG E+ L + +D L ++ E Sbjct: 125 VNGRIDLTQAESVMDIIRAKTDKARQVAVKQLSGGLLTEIRVLRQEILDVLANV----EV 180 Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234 ++D+ E D + +++++L + I + + G+I+RNG K I+G N GKSS Sbjct: 181 NIDYPEY-DEEEVTAQKMLACAEAVSGKIDRLLETAQEGQILRNGLKTAIVGRPNVGKSS 239 Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294 L N L + D AIVTD+ GTTRD L + ++G +++ DTAGI T+D VEK G++R+ Sbjct: 240 LLNYLTQSDKAIVTDVAGTTRDTLEEFVSVKGVPLELIDTAGIHHTEDQVEKIGVERSKK 299 Query: 295 EVENADLILLL----KEIN--SKKEISFPKNIDFIFIGTKSDLYSTYT------EEYDHL 342 + ADLILLL +E+ ++ + I + K DL T E + Sbjct: 300 AIAQADLILLLLDGSQELTEEDRRLLELTAGKKRIIVLNKMDLGQKLTAAEIAKESGSEV 359 Query: 343 ISS--FTGEGLEELINKIKSILSNKFKKLPFS----IPSHKRHLYHLSQTVRYL-EMASL 395 IS+ E L+EL IK + FK + S + +++R L++ + L ++AS Sbjct: 360 ISTSIMMKENLDELEALIKKLF---FKGIENSNDQVLVTNQRQAGLLAKAKQQLADVASG 416 Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E +D++ + A SLG+ITG +++L++ +FS+FC+GK Sbjct: 417 LESGMPVDLVQIDFTGAWESLGEITGDSALDELINDLFSQFCLGK 461 >gi|297623423|ref|YP_003704857.1| tRNA modification GTPase TrmE [Truepera radiovictrix DSM 17093] gi|297164603|gb|ADI14314.1| tRNA modification GTPase TrmE [Truepera radiovictrix DSM 17093] Length = 455 Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 151/461 (32%), Positives = 236/461 (51%), Gaps = 39/461 (8%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFG--LDG--- 58 +TI A++T A+ I+RLSGP + V E F + P R +G +D Sbjct: 8 DTIAAIATAPGVGAVGIVRLSGPESYAVAERLFAPRSGAPVAALPPGRVVYGRIVDAATD 67 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 +D+ LL+ F +P S+TGED E HGG AV+ +L+ L RLA PGEF+ RAF Sbjct: 68 ETVDEALLLTFRAPHSYTGEDVLELQTHGGPAVLRRVLD-LCTAHGARLAGPGEFTLRAF 126 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 +G++DL++AE++ DL++++++ RR + G+S L+ G D +T + I+A D+ Sbjct: 127 LSGRLDLVQAEAVLDLVNAQSDSARRNAALGLSKALTEQLGLIQDDITRVYGDIQAVFDY 186 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 +E V + + L L + +S + G + + G ++ ++G NAGKSSL NA Sbjct: 187 PDE-GVPEAAFQAPLERAL---GRVRGLLSTARAGRVAQRGARLALIGRPNAGKSSLLNA 242 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L +IV+ PGTTRD L +D+ G V DTAGIR+T D VE G++ E+ Sbjct: 243 LLGYRRSIVSSTPGTTRDYLEAPVDILGVPVTAVDTAGIRDTGDAVEASGVEAAKEIAEH 302 Query: 299 ADLILLLKEINSK---------KEISFPKNIDFIFIGTKSDLYSTYTEEYDH-------- 341 ADL LLL + ++ E+S + + + +KSDL + Sbjct: 303 ADLGLLLLDSSTPLAPDDRALVGELSPAR---LLVVASKSDLPPAWDPCAAQRELGVGPV 359 Query: 342 -LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC 400 +S+ TGEGL L I+ L + +++RH+ L +LE A K Sbjct: 360 LRVSAATGEGLGALKEAIRERLVGDAGGSALWL-TNERHIAALEAVREHLERA----KAA 414 Query: 401 GLDIIAENLRLASVSLGKITGCVDV-EQLLDIIFSKFCIGK 440 D+ A +L A +LG++TG +V E+ L IF+ FC+GK Sbjct: 415 PDDLAALDLEDALKTLGELTGRGEVAEETLAHIFANFCVGK 455 >gi|307718005|ref|YP_003873537.1| tRNA modification GTPase [Spirochaeta thermophila DSM 6192] gi|306531730|gb|ADN01264.1| tRNA modification GTPase [Spirochaeta thermophila DSM 6192] Length = 449 Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 149/451 (33%), Positives = 238/451 (52%), Gaps = 27/451 (5%) Query: 8 IFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG--- 64 I A++T SAI++IR SG C + + + + +K R +S+R + G ++D G Sbjct: 8 IVALATPWGRSAIAVIRTSGVGCLEALDPLFRGRK---RPSSMRGYSLAHGALVDPGTGE 64 Query: 65 -----LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 LL VF +P S+TGED+AE HG A V I+ L R A PGEF+ RAF Sbjct: 65 MLDEVLLAVFRAPHSYTGEDAAEISCHGSPAGVERIMRTLLAH-GFRAAEPGEFTLRAFL 123 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NGK+DL EAE++ +++S+ T L++ + G L + +K+ + + +E LD+ Sbjct: 124 NGKVDLTEAEAVHEVVSARTANAHTLALHRLEGRLHARIDAIKEKIASVVAEVEVQLDYP 183 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 EE DV++ S ++ + L +++ ++ ++G + R G ++V+ G +NAGKSSLFN Sbjct: 184 EE-DVEHPVSAHLIQEAL---HEVDGLLATYRVGRLYREGVRVVLAGRTNAGKSSLFNLF 239 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 ++D AIV+++ GTTRD L + L+G V + DTAGIR+ D VE EGI+RT + +A Sbjct: 240 MREDRAIVSEVHGTTRDYLEGWISLKGVPVLLYDTAGIRDGGDPVETEGIRRTREILSHA 299 Query: 300 DLILLL---KEINSKKEISFPKNI----DFIFIGTKSDLYSTYTEEYDHL-ISSFTGEGL 351 D ++ L E S+ E + + I + K D + + +S TGEG Sbjct: 300 DAVIYLVDGTEGFSEGEEALIAELGAERPLIPVWNKVDASAVLPPPEGFIPLSCRTGEGF 359 Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDIIAENL 409 L + + + +R L + LE + +L+ + LD +A L Sbjct: 360 ARLEETLHRVFPEAEGGGAEVVIDSERQRDALVRCRDSLEGGLDALS-RGAPLDALAVYL 418 Query: 410 RLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A +LG+ITG V E +L+ IFS FC+GK Sbjct: 419 HDAMEALGEITGEVTREDILERIFSCFCVGK 449 >gi|182412706|ref|YP_001817772.1| tRNA modification GTPase TrmE [Opitutus terrae PB90-1] gi|205415785|sp|B1ZWP5|MNME_OPITP RecName: Full=tRNA modification GTPase mnmE gi|177839920|gb|ACB74172.1| tRNA modification GTPase TrmE [Opitutus terrae PB90-1] Length = 452 Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 136/458 (29%), Positives = 247/458 (53%), Gaps = 24/458 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M ++TI A++T A SA++I+R SGP ++ E I + P PR+ + G I Sbjct: 1 MPPLEDTIAALATPAGISALAILRASGPDTRRIAEAILGRT-PLPRRIQRVDYRDRAGHI 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+ L + FP P S+TGED E HG + +L++L R A PGEF++RAF N Sbjct: 60 LDEVLCVFFPQPRSYTGEDLLEISTHGNPFIAQRVLQDLFAR-GCRPAGPGEFTQRAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G++DL +AE++ DLI ++++ + + G L + ID++ + + +EA +DF + Sbjct: 119 GRLDLSQAEAVMDLIHAQSDRALAAANHQLRGSLGRHVQRIIDRVVRVLAQVEAYIDFPD 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E D+ + + + ++ +++ I+ + G +IR+G K VI+G N GKSSL N L Sbjct: 179 E-DLPSSNRDTLAAELEMARHEAEQLIATQRYGNLIRDGIKTVIVGAPNVGKSSLLNRLV 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ A+V+ PGTTRD + + + + +++ DTAG+ + +E GI ++ ++ +AD Sbjct: 238 GRERALVSAEPGTTRDFIEERIAVGEHCIRLVDTAGLNVSPAPLEALGIHKSLEQLADAD 297 Query: 301 LILLLKEINSKKEISFPKNI-------DFIFIGTKSDLYS-----TYTEEYDHLI--SSF 346 L+L + ++ S E S P + + + + K DL + +++ ++ S+ Sbjct: 298 LVLAIVDL-SDPEPSLPPELAKRLDPKNTLLVANKIDLCAGKCVLDTVDQWFGMVFCSAK 356 Query: 347 TGEGLEELINKIKSILSNKFK----KLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402 G GL++L I +++++ + ++ + H L+ + L D Sbjct: 357 IGVGLDDLFGAIGR-WADQWQITVGQDVIAVNARHSHALALALEALDAALDKLRSGDAA- 414 Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++A +LR A ++LG I G VD E++LD +F+ FCIGK Sbjct: 415 ELLASDLRSALLALGDIAGRVDNERVLDELFATFCIGK 452 >gi|315039281|ref|YP_004032849.1| tRNA modification GTPase TrmE [Lactobacillus amylovorus GRL 1112] gi|325957755|ref|YP_004293167.1| tRNA modification GTPase TrmE [Lactobacillus acidophilus 30SC] gi|312277414|gb|ADQ60054.1| tRNA modification GTPase TrmE [Lactobacillus amylovorus GRL 1112] gi|325334320|gb|ADZ08228.1| tRNA modification GTPase TrmE [Lactobacillus acidophilus 30SC] gi|327184388|gb|AEA32835.1| tRNA modification GTPase TrmE [Lactobacillus amylovorus GRL 1118] Length = 461 Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 153/469 (32%), Positives = 253/469 (53%), Gaps = 46/469 (9%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK----KKKPFPRKASLRYFFGLD-- 57 E +TI A+ST ISI+R+SG ++ + K K P ++ Y +D Sbjct: 7 EFDTIAAISTPIGEGGISIVRMSGEDAVKIANEVFKGANLAKVP---THTIHYGHIIDPD 63 Query: 58 -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 G +D+ ++ V +P++FT ED E + HGGI V N IL+ L R+A+PGEF++R Sbjct: 64 TGETIDEAMVTVLRAPKTFTREDIVEINCHGGIVVTNRILQLLLSH-GARMADPGEFTKR 122 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFI 172 AF NG+IDL +AES+ D++ ++T+ R+++ + + G ++ ++ + +D L ++ Sbjct: 123 AFVNGRIDLTQAESVMDIVRAKTDKARKVAEKQLEGGLLHKIRAMRQEILDTLANV---- 178 Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232 E ++D+ E D ++K++ + + I +S + G+I+RNG I+G N GK Sbjct: 179 EVNIDYPEY-DADTVTAKQMADTANSVIKKIDRLLSTAQEGKILRNGLATAIVGQPNVGK 237 Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292 SSL N L + D AIVTD+ GTTRD L + ++G +++ DTAGI TDD VEK G++R+ Sbjct: 238 SSLLNYLTQSDKAIVTDVAGTTRDTLEEYVSVKGVPLELIDTAGIHHTDDKVEKIGVERS 297 Query: 293 FLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLIS 344 +E ADL+LLL I++ +E I K+ I I KSDL T D + Sbjct: 298 KKALERADLVLLL--IDASQELTDEDKALIDETKDKKRIIILNKSDLGQKLT--VDQMKQ 353 Query: 345 SFTGEGLEELINKIKSI--LSNKFKKLPFS---------IPSHKRHLYHLSQTVRYLE-- 391 E + I K K++ L KL FS + +++R L + + L+ Sbjct: 354 MTGSEVISTSILKEKNLDQLEEVISKLFFSGIENSNDQVMVTNQRQTSLLQKAKKELQDV 413 Query: 392 MASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + ++N+ +DI + A +LG+ITG ++L+ +FS+FC+GK Sbjct: 414 VQAVNDG-VPVDIAQIDFTGAWDTLGEITGESAPDELITTLFSQFCLGK 461 >gi|218129883|ref|ZP_03458687.1| hypothetical protein BACEGG_01465 [Bacteroides eggerthii DSM 20697] gi|217987993|gb|EEC54318.1| hypothetical protein BACEGG_01465 [Bacteroides eggerthii DSM 20697] Length = 461 Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 148/469 (31%), Positives = 250/469 (53%), Gaps = 43/469 (9%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI---- 60 ++TI A++T A AI IR+SGP ++ I R + + GRI Sbjct: 3 QDTICAIAT-AQGGAIGCIRVSGPEAIEITSRIFTPAISNKRLEESKPYTLTFGRIHEGS 61 Query: 61 --LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 +D+ L+ +F +P S+TGE+S E HG ++ +L+ L K R+A PGE+++RAF Sbjct: 62 EIIDEVLVSLFRAPHSYTGENSTEITCHGSAYILQKVLQLLIK-NGCRMAQPGEYTQRAF 120 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NGK+DL +AE++ADLI+S + RL+M M G S ++L H S IE +LDF Sbjct: 121 LNGKMDLSQAEAVADLIASSSAATHRLAMSQMRGGFSKELTTLRNQLLHFTSLIELELDF 180 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHI----SQGKLGEIIRNGYKIVILGHSNAGKSS 234 S+ E+++ F+ + +++ L ++I I + +G I+NG + I+G +NAGKS+ Sbjct: 181 SDHEELE-FADR---SELCLLADNIEKVIVRLVNSFNVGNAIKNGVPVAIIGETNAGKST 236 Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294 L N L ++ AIV+DI GTTRDV+ +++ G + DTAGIRET+D +E GI+RTF Sbjct: 237 LLNVLLNEEKAIVSDIHGTTRDVIEDTVNIGGITFRFIDTAGIRETNDTIESLGIERTFQ 296 Query: 295 EVENADLIL-LLKEINSKKEIS------FP--KNIDFIFIGTKSDLYSTYTEEYDH---- 341 +++ A+++L ++ N++ +I+ P + I + K DL + + Sbjct: 297 KLDQAEIVLWMIDATNAQTQITQLSSQLLPRCRAKQLILVYNKVDLVANIQNDIPTNFPD 356 Query: 342 -----LISSFTGEGLEELINKIKSILSNKFKKLPFS--IPSHKRHLYHLS---QTVRYLE 391 +IS+ E +EEL + I S + + I ++ RH L+ + + ++ Sbjct: 357 DVKSIVISAKKREHIEELQQML--ITSAHLPTITQNDVIVTNVRHYEALNNALEAIHRVQ 414 Query: 392 MASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +N + D +++++R L I G V + +L IF FC+GK Sbjct: 415 EGLVN--NLSGDFVSQDIRECIFHLSDIAGEVTNDMVLQNIFQHFCVGK 461 >gi|205422284|sp|A5UY19|MNME_ROSS1 RecName: Full=tRNA modification GTPase mnmE Length = 461 Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 150/464 (32%), Positives = 232/464 (50%), Gaps = 36/464 (7%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLD--GRILD 62 +TI A++T I I+R+SG ++ E I +P K +RY +D G ++D Sbjct: 5 DTIAAIATPPGEGGIGIVRISGRDALKILERIFVPVRPGRWKPYQMRYGRVVDQNGAVVD 64 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 + L + P SFT ED+AE VHGG VV +L++ R A PGEF+ RAF NG+ Sbjct: 65 EALAVFMRGPRSFTAEDTAEISVHGGPLVVERVLQQALAA-GARAAAPGEFTMRAFLNGR 123 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 IDL +AE+ D+I++ T L+ + G LS + D L ++ A +DF E+E Sbjct: 124 IDLAQAEATLDIITARTTTALALAEAQLGGWLSQELHRIRDLLMDPLAYCTALVDFPEDE 183 Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 +++ + + + ++ + G I R G + ++G NAGKSSL NAL + Sbjct: 184 ----VDPQDIETPLTAAVQALDALVASAQHGIIYRQGARAALIGRPNAGKSSLLNALLRV 239 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 D AIVT IPGTTRD L L G V ++DTAGI E+DD VE+ G+ R+ V ADL Sbjct: 240 DRAIVTPIPGTTRDTLEETASLGGVPVVLTDTAGIVESDDPVERLGVARSRQAVRLADLA 299 Query: 303 LLLKEIN---------------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL----- 342 LL+ +++ K+ I ID I + + EY+ + Sbjct: 300 LLVVDVSLPVADDDREIVALTEEKRTILTLNKID--LIDADRSIIAARQREYEQIRGKAF 357 Query: 343 -----ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN- 396 +S+ TG+GL+EL + +L + ++ RH L++ + A Sbjct: 358 DAMVTVSALTGQGLDELGATVARLLLGAPIAADGRLVTNARHRDALARAADHARDALTGF 417 Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++ D++A +L A ++G++TG E LL IFS+FCIGK Sbjct: 418 QQGVSPDLLAVDLTAAINAIGEVTGESVGEDLLHAIFSRFCIGK 461 >gi|282877893|ref|ZP_06286702.1| tRNA modification GTPase TrmE [Prevotella buccalis ATCC 35310] gi|281299894|gb|EFA92254.1| tRNA modification GTPase TrmE [Prevotella buccalis ATCC 35310] Length = 469 Score = 200 bits (509), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 145/456 (31%), Positives = 244/456 (53%), Gaps = 28/456 (6%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPF----PRKASLRYFFGLDGRI 60 TI A+ST A AI++IRLSG + + F+ K P+ + DG + Sbjct: 20 TICALSTPA-GGAIAVIRLSGNDAINIADKVFVSKSNHRLTEAKPQTLHFGHLTNQDGEV 78 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+ L+ VF SP S+TGE++ E HG V++ IL+ + R ANPGE+++RAF N Sbjct: 79 IDEVLVSVFRSPHSYTGENAVEISCHGSQYVISQILKTFIQ-NGCRQANPGEYTQRAFMN 137 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GK+DL +AE++ADLI+S +++M + G S ++L I S +E +LDFS+ Sbjct: 138 GKMDLSQAEAVADLIASTNRATHQMAMSQLKGHFSDELALLRNQLLKITSLLELELDFSD 197 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E+++ E+L+ + + + + G+ + G + I+G +N GKS+L N L Sbjct: 198 HEELEFADRTELLDLAQTIDQRLYTLARSFETGKAYKQGVAVAIVGKTNVGKSTLLNQLL 257 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 K++ AIV++I GTTRDV+ +++G + DTAGIR T+D +E+ GI+RT+ ++ A Sbjct: 258 KEEKAIVSNIHGTTRDVIEDTTEIKGVTFRFIDTAGIRSTNDEIERLGIERTYKKLNEAR 317 Query: 301 LIL-LLKEINSKKEIS----FPKNIDFIFIGTKSDLYSTYTEEYDHLISSF-------TG 348 +IL L+ E ++ EI + ++ I + K D+ + + + +S+ T Sbjct: 318 IILWLVDEQPNRSEIQEMLEYCEDKQVILVQNKIDIRTIPDKLSTNNLSTIQISAKLGTN 377 Query: 349 EG-LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN--EKDCGLDII 405 G LE L+ + +I + + H L H +++ + +N + D D+I Sbjct: 378 IGQLENLLYQKANIPEITENDVIITSARHYDALIHAKESITRV----INGLKADLSGDLI 433 Query: 406 AENLRLASVSLGKITGC-VDVEQLLDIIFSKFCIGK 440 AE+LR+ L ITG + ++L+ IF FCIGK Sbjct: 434 AEDLRVCLDQLADITGGQITTPEVLENIFKHFCIGK 469 >gi|265762625|ref|ZP_06091193.1| tRNA modification GTPase TrmE [Bacteroides sp. 2_1_16] gi|263255233|gb|EEZ26579.1| tRNA modification GTPase TrmE [Bacteroides sp. 2_1_16] Length = 465 Score = 200 bits (509), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 156/476 (32%), Positives = 257/476 (53%), Gaps = 53/476 (11%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFI---CKKKKPFPRKASLRYFFG--LDGR 59 ++TI A++T A AI IR+SGP + I K K + FG +G Sbjct: 3 QDTICAIAT-AQGGAIGSIRVSGPEAITITGRIFTPAKSGKLLSEQKPYTLTFGRIYNGE 61 Query: 60 -ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 ++D+ L+ +F +P S+TGEDS E HG ++ +++ L K R+A PGE+++RAF Sbjct: 62 EMIDEVLVSLFRAPHSYTGEDSTEITCHGSSYILQQVMQLLIK-NGCRMAQPGEYTQRAF 120 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NGK+DL +AE++ADLI+S + RL++ M G S +KL + S IE +LDF Sbjct: 121 LNGKMDLSQAEAVADLIASSSAATHRLALSQMRGGFSKELTTLREKLLNFTSMIELELDF 180 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQG-KLGEIIRNGYKIVILGHSNAGKSSLFN 237 SEE DV+ F+ + L + ++ + ++ +G +I+NG + I+G +NAGKS+L N Sbjct: 181 SEE-DVE-FADRSALRRLADEIEEVIARLANSFSVGNVIKNGVPVAIIGETNAGKSTLLN 238 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 L +D AIV+DI GTTRDV+ +++ G + DTAGIRET D +E GI+RTF +++ Sbjct: 239 VLLNEDKAIVSDIHGTTRDVIEDTVNIGGITFRFIDTAGIRETSDTIESLGIERTFQKLD 298 Query: 298 NADLILLLKEINSKKEIS---------FPK--NIDFIFIGTKSDLYSTYTEEYDHLISSF 346 A+++L + I+S IS P+ + I + K +L + + + L S F Sbjct: 299 QAEIVLWM--IDSADAISQLTLLSDKILPRCEHKQLILVFNKVELINET--QKNELASQF 354 Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKR-----HLYHLSQ------TVRYLE---- 391 + E + ++I+SI + ++L ++ +R HL ++Q VR+ E Sbjct: 355 S----EHIGSEIESIFISAKQRL-YTDELQQRLVAAAHLPAVTQNDVIVTNVRHYEALTR 409 Query: 392 -MASLNEKDCGL------DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + +++ GL D +++++R L I G V + +L IF+ FCIGK Sbjct: 410 ALDAIHRVQEGLDANISGDFLSQDIRECIFHLSDIAGEVTNDMVLQNIFAHFCIGK 465 >gi|257127029|ref|YP_003165143.1| tRNA modification GTPase TrmE [Leptotrichia buccalis C-1013-b] gi|257050968|gb|ACV40152.1| tRNA modification GTPase TrmE [Leptotrichia buccalis C-1013-b] Length = 455 Score = 200 bits (509), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 155/458 (33%), Positives = 241/458 (52%), Gaps = 29/458 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA--SLRYFFGLDGR-ILD 62 +TI A+ST I+IIR+SG F++ + I KK P L Y F DG+ +D Sbjct: 4 DTIAAISTPKGEGGIAIIRISGDKSFEILDKIFIKKNPNADLGFYKLNYGFIKDGKKTID 63 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 + + + +P S+T ED E + HGG V +LE L R A GEF++RAF NG+ Sbjct: 64 EVMAVRLKAPRSYTCEDIVEINCHGGTLVSEKVLE-LVLRNGARHAESGEFTKRAFMNGR 122 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 IDL +AE++ D+I +TE LS++ + G+L ++ L I + + LD+ EE Sbjct: 123 IDLSQAEAVMDIIQGKTEKSVSLSLDQLRGDLRDKVNEFKKALLDITAHVNVVLDYPEE- 181 Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 + + E+ +++ + + + I G+ I+ G K VI+G N GKS+L NAL + Sbjct: 182 GIDDPLPVELRDNLEKVYEEANRLIDSYNTGKKIKEGIKTVIVGKPNVGKSTLLNALLHE 241 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 + AIVT I GTTRDV+ ++++G + + DTAGIR+TDDIVE G++++ +E ADL+ Sbjct: 242 ERAIVTHIAGTTRDVIEEIINIKGIPLVLVDTAGIRKTDDIVENIGVEKSKQFIEKADLV 301 Query: 303 LLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYSTYTEEYDHL-----ISSFTGE 349 LL+ + + K E N I + K DL E +L IS+ Sbjct: 302 LLVLDASKKLETEDIEVITKIKENNKKVIVLLNKIDLNKKINLEGYNLENIVEISAKDNI 361 Query: 350 GLEELINKIKSIL-----SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL-- 402 G+E++ KI S + N +KL + HK L +R + D GL Sbjct: 362 GIEDMQEKIYSYIVEEDVENSSEKLIITNIRHKTALEKTKDAIRNI----FETIDMGLPM 417 Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D+I+ +L+ A SL +ITG + E +LD +F+ FC+GK Sbjct: 418 DLISVDLKEALDSLSEITGEISSEDILDHVFANFCVGK 455 >gi|195953055|ref|YP_002121345.1| tRNA modification GTPase TrmE [Hydrogenobaculum sp. Y04AAS1] gi|195932667|gb|ACG57367.1| tRNA modification GTPase TrmE [Hydrogenobaculum sp. Y04AAS1] Length = 438 Score = 200 bits (509), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 156/451 (34%), Positives = 241/451 (53%), Gaps = 33/451 (7%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66 TI A +T L SAISI+RLSG +C + + P PR A R F ++ + LD + Sbjct: 4 TIVAPATPVLKSAISILRLSGFNCIDIANRFLHIENPKPRYA-YRTSFYVNNKELDDVIA 62 Query: 67 IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126 I + +P S+TGED E HG ++ +E L A+PGEF++RAF NGK+ L Sbjct: 63 IYYKAPRSYTGEDMLEIFFHGNPIIIEKAIETLVDY-GCSFASPGEFTKRAFLNGKMTLD 121 Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186 EA S+ LIS+ TE ++ + G+ SS + I + IEAD++F E D+Q Sbjct: 122 EASSVELLISANTEKALENALNMLKGKFSSFIEGLRKEFIRIIANIEADIEFGYE-DIQP 180 Query: 187 FSSKEVLNDILFLKNDISSHISQ--GKLGE--IIRNGYKIVILGHSNAGKSSLFNALAKK 242 E+ +I ND+ + + KL E + +G K+ I+G N GKSSLFN L +K Sbjct: 181 LDVNEIKKEI----NDLICRLEEFHKKLKEQSYLYDGIKVAIVGKPNVGKSSLFNTLLQK 236 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 AIV+DIPGTTRD + L++ G+ VK+ DTAGIR+TD+ +E+EGI ++ A ++ Sbjct: 237 RRAIVSDIPGTTRDYIEDRLEINGFPVKLVDTAGIRKTDNPIEREGINIAIEHMKEAHVV 296 Query: 303 LLLKEINSKKEI--------SFPKNIDFIFIGTKSDL-YSTYTEEYDH----LISSFTGE 349 L + ++ K++ KN++ + KSDL ++ T ++ +IS E Sbjct: 297 LFV--VDGSKDLEEEDYFIYDIVKNLNTLVALNKSDLGINSKTLDFFKNNAIIISIRNQE 354 Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENL 409 +E L NK+ +L + S KR+ + +++ + L+ A L K +++ + Sbjct: 355 NVEYLKNKVLHMLDLADDGIYVS----KRNKFLVAKALESLKEAVLQNK---TEVMMLYI 407 Query: 410 RLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 R A L +I G + E +LD IFS FCIGK Sbjct: 408 REALDYLEEILGLIKDEDVLDEIFSTFCIGK 438 >gi|297618522|ref|YP_003703681.1| tRNA modification GTPase TrmE [Syntrophothermus lipocalidus DSM 12680] gi|297146359|gb|ADI03116.1| tRNA modification GTPase TrmE [Syntrophothermus lipocalidus DSM 12680] Length = 460 Score = 200 bits (509), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 153/473 (32%), Positives = 250/473 (52%), Gaps = 52/473 (10%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLR----YFFGL---- 56 ++TI A++T I+I+R+SG + E + + P P L+ Y GL Sbjct: 3 EDTIAAIATPLGEGGIAIVRVSGREAVDIVEKVFR---PVPGGKRLKDRGGYTLGLGWIV 59 Query: 57 --DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114 G +D+ L+ V P+S+T ED E + HGG+ LE + + RLA PGEF+ Sbjct: 60 DRKGNHVDEVLVTVMRGPKSYTAEDVVEINCHGGVLAAIRCLETVLE-NGARLAEPGEFT 118 Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174 +RAF NG++D+ +AE++ D+I ++TE ++++ + G L + D+L + + +EA Sbjct: 119 KRAFLNGRLDISQAEAVIDIIRAKTEKGMSMAVKQLEGMLRKRVAELEDRLVGLNTMVEA 178 Query: 175 DLDFSEE-----EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSN 229 +DF EE E++ ++E+L ++ L + G+ + + G K+VI G N Sbjct: 179 SIDFPEEVGDLDEEIARQQAQEILRELEGL-------LRAGERNRVYQWGVKVVIAGKPN 231 Query: 230 AGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGI 289 GKSSL NAL +K AIVTDIPGTTRD++ ++++G V I DTAGIRET D+VE+ G+ Sbjct: 232 VGKSSLLNALLRKKKAIVTDIPGTTRDIVEDYINVKGIPVNIMDTAGIRETGDLVERIGV 291 Query: 290 KRTFLEVENADLILLLKEIN---SKKEISFPKNI---DFIFIGTKSDLYSTYT--EEYDH 341 +R+ + AD+IL + + S+++ K + I + K DL EE + Sbjct: 292 ERSEEVISEADIILAVLDAGAGISEEDERVAKMVAGRRVIVLVNKEDLEEKRVTLEEVER 351 Query: 342 LISSFTGE-----------GLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRY 389 L F G+ GLEEL + I +++L+ K + I + R + Sbjct: 352 L---FPGQTVVRGSVKEEIGLEELESAIEEAVLAGKVEAGDEDIMVNLRQEEAFRRVKTS 408 Query: 390 LE--MASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +E +A L E + LD +A ++ A +LG+ITG E +++ IF +CIGK Sbjct: 409 MEGFLAGL-ETNTSLDCLAVDIGEALEALGEITGKTLKEDVIERIFRDYCIGK 460 >gi|76789438|ref|YP_328524.1| tRNA modification GTPase TrmE [Chlamydia trachomatis A/HAR-13] gi|123606658|sp|Q3KKZ6|MNME_CHLTA RecName: Full=tRNA modification GTPase mnmE gi|76167968|gb|AAX50976.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase [Chlamydia trachomatis A/HAR-13] Length = 444 Score = 200 bits (509), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 156/457 (34%), Positives = 239/457 (52%), Gaps = 37/457 (8%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRIL 61 +TI A++T +I+I+R+SGP + + I AS G + + Sbjct: 4 NDTITAIATPPGEGSIAIVRVSGPDAISISDRIFSGN--IAGYASHTAHLGTVSHNAVYI 61 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGI----AVVNGILEELAKMPNLRLANPGEFSRRA 117 D+ L++V +P SFTGED EF HGG +VN +L E A R A PGEFS+RA Sbjct: 62 DQALVLVMRAPRSFTGEDIVEFQCHGGYFACSQIVNTLLAEGA-----RAALPGEFSQRA 116 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NGKIDL++AE++ LI+++ R++ G S + ++IE D Sbjct: 117 FLNGKIDLIQAEAIQQLIAADNIDAFRIAQNQFQGHTSQAISSISSLIIEALAYIEVLAD 176 Query: 178 FSEEE-DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 F EE+ + ++ K + + L + +++ S +G+ + G IV+ G NAGKSS+ Sbjct: 177 FPEEDIETEDSLPKHRIMEALSITDELLSSFDEGQR---LAQGTSIVLAGLPNAGKSSIL 233 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 NAL +K+ AIVTDIPGTTRD+L + L+G +++ D+AG+RET+++VEKEGI R + Sbjct: 234 NALTQKNRAIVTDIPGTTRDILEENWVLQGKNLRLIDSAGLRETENLVEKEGIARAREAM 293 Query: 297 ENADLILLLKEINSKKEISFPKNI---DFIFIGTKSDLYSTYTEE--YDHL-ISSFTGEG 350 A+ IL + + S+ FP + I + K D+ S E + + +S+ TGEG Sbjct: 294 SQAEGILWVVDA-SQPLPEFPTILYQKPTILLWNKCDIVSPPQIEVPFQQISVSAKTGEG 352 Query: 351 LEELINKIKSILSN----KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE---KDCGLD 403 L EL ++ L+ K K+ F + + L H T + E +C Sbjct: 353 LLELKQALQKWLNTTQLGKSSKI-FLVSARHHSLLHSVYTCLTAALNGFTEHLPNEC--- 408 Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 IA +LR A S+G ++G E +L IFSKFCIGK Sbjct: 409 -IALDLRQALHSIGNLSGSEVTENVLGEIFSKFCIGK 444 >gi|1902827|dbj|BAA19450.1| ORF4 [Leptospira interrogans] gi|2780770|dbj|BAA24373.1| ORF4; putative [Leptospira interrogans] Length = 435 Score = 200 bits (509), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 146/440 (33%), Positives = 228/440 (51%), Gaps = 29/440 (6%) Query: 25 LSGPSCFQVCEFICKKKKPF-------PRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77 +SGP + K F PR A ++ F + R +D+ L F SP S+TG Sbjct: 1 MSGPEALTISSSFLFSKNKFLSPSEILPRTA-IQCVFQIGDRKIDQILFFYFKSPNSYTG 59 Query: 78 EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137 ED EFH HG ++ L+ + + R A GEFSRRAF N K+DL E E++ LIS+ Sbjct: 60 EDLCEFHFHGNPILLREALDAIFR-AGARPAKQGEFSRRAFLNEKLDLTEVEAIGRLISA 118 Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197 + + L+ + + GE++ +L +++ EA++DFS E D+ S +E I Sbjct: 119 RSRFELELAQKNVFGEVTRFTSNLRSQLISLKAECEAEIDFSTE-DLTYESLEERKTRIE 177 Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257 +K+ + IS+ E + ++IV+ G N GKSSL N L K+ +I+++IPGTTRD Sbjct: 178 NVKSLCQTLISKSSSAEKLIQQFRIVLYGEPNTGKSSLMNVLLGKERSIISEIPGTTRDY 237 Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE---- 313 ++ ++ LEG V++ DTAG+RET D +EK GI+R+ E ++AD+ L L ++ SKKE Sbjct: 238 ISEEIFLEGIPVRLVDTAGVRETTDHIEKLGIERSEKEFQSADVRLFLVDV-SKKENWKE 296 Query: 314 ------------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSI 361 I ID + +L+S + IS T EG+ L++ IK Sbjct: 297 FINKSRERLEGSILIANKIDILNSSWDRNLFSDVKDLIVLEISCKTKEGISNLLDAIKE- 355 Query: 362 LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDIIAENLRLASVSLGKIT 420 + K + +R YH VR L+ L ++ +I + + A +G++ Sbjct: 356 RTGKLGHSEDYVLLEERQRYHFETIVRCLDKTLHLLKEGAPAEIYIQEINYALAEIGEVN 415 Query: 421 GCVDVEQLLDIIFSKFCIGK 440 G VD E++L IFSKFC+GK Sbjct: 416 GKVDTEEVLGRIFSKFCVGK 435 >gi|295698382|ref|YP_003603037.1| tRNA modification GTPase TrmE [Candidatus Riesia pediculicola USDA] gi|291157050|gb|ADD79495.1| tRNA modification GTPase TrmE [Candidatus Riesia pediculicola USDA] Length = 465 Score = 200 bits (509), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 162/465 (34%), Positives = 251/465 (53%), Gaps = 40/465 (8%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64 ++TI A ST I I+R+SG QVC+ I K+K PR A+ F+G +++D G Sbjct: 12 QDTIVAQSTPPGIGGIGILRISGTEIDQVCQKILKRKLQ-PRYATYLPFYGEFDQVIDHG 70 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 + I F P SFTGE+ E H HGG +++ ++E + K P +R+A PGEF++RAF N KID Sbjct: 71 IAIYFIKPNSFTGENVLELHAHGGQIIIDILMENILKFPRIRVAYPGEFTKRAFLNNKID 130 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQ---WIDKLT-HIRSFIEADLDFSE 180 L++AES+ +LI + T R S++ + E +S + + I K+ I+S +E ++F E Sbjct: 131 LIQAESICELIHANTREAARNSVKYV--EKNSKFSKNLFSIKKMVEEIQSLVEIKINFPE 188 Query: 181 EE---DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 E N S K + + IL L+N I I + E I KI I+G N+GKSSL N Sbjct: 189 ENLSFSKDNLSCK-IQDVILKLENLIDGLIYNSNVSEFI----KISIVGKPNSGKSSLMN 243 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 L++K+ +IVT I GTTRD++ ++ + G V+ISDTAGIR + + +E+ GIK+ E++ Sbjct: 244 ILSEKEASIVTSIRGTTRDIIKENIHIHGVSVQISDTAGIRRSKNEIERIGIKKALKELK 303 Query: 298 NADLILLLKE-INSKKEISFPKNIDFI----FIGTKSDLYSTYTEEYDHL---------- 342 ++ +L + E + K S NI I F +KS + D+L Sbjct: 304 ESEHVLYVTEDVICKNFFSEKNNILSILKKNFSSSKSFTIIKNKIDIDNLSSGIKVIEGC 363 Query: 343 ----ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL-NE 397 +SS T +GLE L +K IL N+ + S +H Y L + + N Sbjct: 364 TVIFLSSKTKDGLEMLKTHLKKILQNR-NHIENKFLS--KHRYRLLLKKSLKHLKKIENV 420 Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDV--EQLLDIIFSKFCIGK 440 + ++I+AE ++L + L +I + +L+ IFS FCIGK Sbjct: 421 SNYSIEILAEEIKLTNEYLDQIFDGRRYYPQNMLNDIFSNFCIGK 465 >gi|115398542|ref|XP_001214860.1| conserved hypothetical protein [Aspergillus terreus NIH2624] gi|114191743|gb|EAU33443.1| conserved hypothetical protein [Aspergillus terreus NIH2624] Length = 367 Score = 200 bits (509), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 111/298 (37%), Positives = 170/298 (57%), Gaps = 25/298 (8%) Query: 33 VCEFICKKKK-PFPRKASLRYFFGL-----DGRILDKGLLIV-FPSPESFTGEDSAEFHV 85 +C +C K P PR A++R + +LD G L++ FP P++ TGED EFH+ Sbjct: 1 MCAALCPKGSFPRPRVAAVRALYDPTTPPSSNSVLDSGALVLYFPGPKTVTGEDVLEFHL 60 Query: 86 HGGIAVVNGILEELAKMPN----LRLANPGEFSRRAFENGKIDLLEAESLADLISSETEM 141 HGG A+V +L +++ +R A PGEF+RRAF N ++DL + E+L D ++++TE Sbjct: 61 HGGPAIVKSVLTAISRTNRDECLVRYAEPGEFTRRAFLNNRLDLPQIEALGDTLTADTEQ 120 Query: 142 QRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSK---EVLNDILF 198 QRRL++ G S LS Y QW +L + R +EA +DF+E++ S + V + + Sbjct: 121 QRRLAVRGASDALSKRYEQWRQQLLYARGELEALIDFAEDQHFDESSDELVHSVASQVQA 180 Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L+ I HI GE++R+G K+ +LG NAGKSSL N + K+ AIV+ GTTRD++ Sbjct: 181 LRVQIELHIQNASKGELLRHGIKVALLGAPNAGKSSLLNRIVGKEAAIVSTEEGTTRDIV 240 Query: 259 TIDLDLEGYLVKISDTAGIRETD-----------DIVEKEGIKRTFLEVENADLILLL 305 + +DL G+ K+ D AGIR VEKEGI+R +D+++ + Sbjct: 241 DVGVDLSGWYCKLGDMAGIRSEAGNGAGEGPVVIGAVEKEGIRRAKARALESDVVIAV 298 >gi|28379977|ref|NP_786869.1| tRNA modification GTPase TrmE [Lactobacillus plantarum WCFS1] gi|300769099|ref|ZP_07078988.1| tRNA modification GTPase TrmE [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308182180|ref|YP_003926308.1| tRNA modification GTPase TrmE [Lactobacillus plantarum subsp. plantarum ST-III] gi|32171799|sp|Q88RX5|MNME_LACPL RecName: Full=tRNA modification GTPase mnmE gi|28272818|emb|CAD65747.1| thiophene and furan oxidation protein ThdF [Lactobacillus plantarum WCFS1] gi|300493339|gb|EFK28518.1| tRNA modification GTPase TrmE [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308047671|gb|ADO00215.1| tRNA modification GTPase TrmE [Lactobacillus plantarum subsp. plantarum ST-III] Length = 463 Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 146/474 (30%), Positives = 240/474 (50%), Gaps = 53/474 (11%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LDG--- 58 E +TI A+ST ISIIR+SG F V I K K R S +G +D Sbjct: 6 EFDTIAAISTPPGEGGISIIRISGDQTFNVVTQIFKGKD-LSRVQSHTINYGHIVDPDTH 64 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 + +D+ + V +P+++T ED E + HGG+ N IL+ L R+A PGEF++RAF Sbjct: 65 QEVDEVMATVMRAPKTYTREDVVEINCHGGLVATNEILQ-LILSHGARMAEPGEFTKRAF 123 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG++DL +AE++ DLI ++T+ ++++ + G+LS L + + + +E ++D+ Sbjct: 124 LNGRLDLSQAEAVMDLIRAKTDKSMKVALNQLDGDLSKLIRHLRQDILDVLAQVEVNIDY 183 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E + V+ ++K + + I+ ++ K G+++R G I+G N GKSSL N Sbjct: 184 PEYDAVETMTTKMLKEKATEVAQSINQLLATAKQGKVLREGLATAIIGRPNVGKSSLLNH 243 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L +D AIVTD+ GTTRDV+ +++ G +K+ DTAGIR+T+D VEK G++R+ + Sbjct: 244 LLHEDKAIVTDVAGTTRDVIEEYVNVRGVPLKLVDTAGIRDTEDKVEKIGVERSRKAIGA 303 Query: 299 ADLIL---------------LLKEINSKKEI------SFPKNIDFIFIGTKSDL------ 331 ADL+L LL+E + K I P +D + DL Sbjct: 304 ADLVLLVLDNSQPLTAEDRELLQETDQSKRIVILNKTDLPARLDQAELAQLVDLSDVLSM 363 Query: 332 ----YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV 387 S T+ + F EG+E N + + ++ RH+ L+Q Sbjct: 364 SVLEQSGVTQLEQRIAKMFFNEGIESSQNNV--------------MVTNARHIGLLNQAK 409 Query: 388 RYLEMASLN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + L+ +D++ ++ LG+ITG ++LLD +FS+FC+GK Sbjct: 410 QALQDVQTGLAAGMPVDLVQIDMTRCWEFLGQITGDSYEDELLDQLFSQFCLGK 463 >gi|169333910|ref|ZP_02861103.1| hypothetical protein ANASTE_00296 [Anaerofustis stercorihominis DSM 17244] gi|169259475|gb|EDS73441.1| hypothetical protein ANASTE_00296 [Anaerofustis stercorihominis DSM 17244] Length = 458 Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 152/471 (32%), Positives = 257/471 (54%), Gaps = 49/471 (10%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK----PFPRKASLRYFFGLD-- 57 +++TI A++T + ISIIR+SG F+VC+ + K KK P K ++ Y ++ Sbjct: 3 KEDTIAAIATPSGYGGISIIRISGSEAFEVCDRVFKMKKGSIFDVP-KNTINYGHIVNKD 61 Query: 58 -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 I+D+ L+ P SFT ED E + HGG++V +L + K RLA GEF++R Sbjct: 62 TNEIIDEVLVSKMCEPHSFTAEDVIEINCHGGMSVTKDVLTLVLK-NGARLAEAGEFTKR 120 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NG+IDL++AE+++D+I+++T + +M + G+LSS + +T++ + +E + Sbjct: 121 AFLNGRIDLVQAEAISDIITAKTSNFAKSAMSSLKGDLSSKIDEIKADITNMLARLEVTI 180 Query: 177 DFSE--EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234 + E EED+ N E++N + + N I IS + GEI+++G K+ I+G N GKS Sbjct: 181 QYPEYDEEDLTNNEIVELINSMKYKLNKI---ISTFEKGEILKDGIKVAIIGKPNVGKSQ 237 Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294 L NAL ++ AIVT+ GTTRD++ ++++G VK DTAGIR D VEK GI ++ Sbjct: 238 LLNALINENKAIVTEEAGTTRDIVDEVVNIKGVPVKFIDTAGIRNADSKVEKIGIDKSIE 297 Query: 295 EVENADLILLLKEINSKKEIS---------FPKNIDFIFIGTKSDLYSTY--TEEYDHL- 342 +E +++IL I++ + + P N + + + K DL + + +D+ Sbjct: 298 MLEESNIILFC--IDTSRALDTEDMDIIKMLPDNKEVLVVLNKMDLNTNVDTVKAFDNYK 355 Query: 343 ---ISSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398 IS+ EG+E++ NKI + ++ + ++ S+ RH + L + + ++ Sbjct: 356 TVEISALKKEGIEKIENKIYELAGLSEDDGVGNTLVSNIRH--------KNLLIGARDDF 407 Query: 399 DCGLDIIAENLRL---------ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D + +I E L + A LG ITG E ++D IF FC+GK Sbjct: 408 DNAIKMINEGLEVDLVEIDINAALYKLGGITGETTSEDIIDEIFKNFCLGK 458 >gi|294155306|ref|YP_003559690.1| tRNA modification GTPase [Mycoplasma crocodyli MP145] gi|291600068|gb|ADE19564.1| tRNA modification GTPase [Mycoplasma crocodyli MP145] Length = 453 Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 145/458 (31%), Positives = 250/458 (54%), Gaps = 30/458 (6%) Query: 6 ETIFAVSTGA-LPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64 +TI A+S+G+ + ISIIR+SGP ++ + I K R + + ++LD+ Sbjct: 3 DTIAAISSGSKVNQPISIIRISGPDTKKIMKKIFTGKIGEDRTITFGNIINQEQQVLDEV 62 Query: 65 LLIVFPSPE--------SFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 L++ F E ++ GE+ E + HGG+ V N ILE + K RLA PGEF+RR Sbjct: 63 LVMWFLGTEKNNKVEYRNYVGEELVEINCHGGLIVTNLILELILK-NGARLALPGEFTRR 121 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NGK+DL++AE++ DLI +++ Q S++ G+ S + ++++L + E ++ Sbjct: 122 AFLNGKLDLVKAEAIHDLIMAKSSKQATFSVKKFDGKTSKMIESFLEELALLIGLCEINI 181 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D+ E +D++ + +++ + L N+I ++ + + + G K+ +LG N GKSSL Sbjct: 182 DYPEYDDIEEIDNTKMIEKLNILINEIDEILTVSQRSKKVFEGVKVALLGKPNVGKSSLL 241 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 NAL ++ AIVTDI GTTRD++ +L+G L + DTAGIRE+ + +E GI+++F ++ Sbjct: 242 NALISENKAIVTDIAGTTRDIIEASYELDGILFTLVDTAGIRESKEKIEVIGIEKSFEQL 301 Query: 297 ENADLILLLKEINSKKEISFPKNID---------FIFIGTKSDLYSTYTEEYDHL-ISSF 346 E ADL++ + + S+KE F K I +I + K DL ++ + + IS+ Sbjct: 302 EKADLVIHILD-PSQKENEFDKKIKDKSKMLNKIYIEVINKDDLILKNKKDKNKIYISAL 360 Query: 347 TGEGLEELINKIKSILSNKFKKLPFS---IPSHKRHLYHLSQTVRYLEMASLNE-KDCGL 402 +E++N K I+ N + + I ++ R L + L A N + Sbjct: 361 N----KEILNLEKEIIKN-YSNINLEDERILANTRQLALIEDAKNKLLCAKNNLINNETF 415 Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D++ ++ A + +I G V+ E LLD +F FC+GK Sbjct: 416 DVVIVDIHEAWEKISEIKGVVNKEDLLDSMFKNFCLGK 453 >gi|148657267|ref|YP_001277472.1| tRNA modification GTPase TrmE [Roseiflexus sp. RS-1] gi|148569377|gb|ABQ91522.1| tRNA modification GTPase trmE [Roseiflexus sp. RS-1] Length = 471 Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 150/464 (32%), Positives = 232/464 (50%), Gaps = 36/464 (7%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLD--GRILD 62 +TI A++T I I+R+SG ++ E I +P K +RY +D G ++D Sbjct: 15 DTIAAIATPPGEGGIGIVRISGRDALKILERIFVPVRPGRWKPYQMRYGRVVDQNGAVVD 74 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 + L + P SFT ED+AE VHGG VV +L++ R A PGEF+ RAF NG+ Sbjct: 75 EALAVFMRGPRSFTAEDTAEISVHGGPLVVERVLQQALAA-GARAAAPGEFTMRAFLNGR 133 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 IDL +AE+ D+I++ T L+ + G LS + D L ++ A +DF E+E Sbjct: 134 IDLAQAEATLDIITARTTTALALAEAQLGGWLSQELHRIRDLLMDPLAYCTALVDFPEDE 193 Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 +++ + + + ++ + G I R G + ++G NAGKSSL NAL + Sbjct: 194 ----VDPQDIETPLTAAVQALDALVASAQHGIIYRQGARAALIGRPNAGKSSLLNALLRV 249 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 D AIVT IPGTTRD L L G V ++DTAGI E+DD VE+ G+ R+ V ADL Sbjct: 250 DRAIVTPIPGTTRDTLEETASLGGVPVVLTDTAGIVESDDPVERLGVARSRQAVRLADLA 309 Query: 303 LLLKEIN---------------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL----- 342 LL+ +++ K+ I ID I + + EY+ + Sbjct: 310 LLVVDVSLPVADDDREIVALTEEKRTILTLNKID--LIDADRSIIAARQREYEQIRGKAF 367 Query: 343 -----ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN- 396 +S+ TG+GL+EL + +L + ++ RH L++ + A Sbjct: 368 DAMVTVSALTGQGLDELGATVARLLLGAPIAADGRLVTNARHRDALARAADHARDALTGF 427 Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++ D++A +L A ++G++TG E LL IFS+FCIGK Sbjct: 428 QQGVSPDLLAVDLTAAINAIGEVTGESVGEDLLHAIFSRFCIGK 471 >gi|145220471|ref|YP_001131180.1| tRNA modification GTPase TrmE [Prosthecochloris vibrioformis DSM 265] gi|205415794|sp|A4SGR9|MNME_PROVI RecName: Full=tRNA modification GTPase mnmE gi|145206635|gb|ABP37678.1| tRNA modification GTPase trmE [Chlorobium phaeovibrioides DSM 265] Length = 473 Score = 200 bits (508), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 149/453 (32%), Positives = 240/453 (52%), Gaps = 35/453 (7%) Query: 19 AISIIRLSGPSCFQVCEFICKKKK----PFPRKASLRYFFGL--DGR-ILDKGLLIVFPS 71 A++I+R+SG ++ + + +KK F FG D R ++D+ + +VF + Sbjct: 25 ALAIVRMSGRGVLEIADRVFRKKGGTAFSFKEAEGFSAHFGTLSDSRGMVDEVIALVFRA 84 Query: 72 PESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESL 131 P SFT ED EF HGG VV +L+ L RLA PGEF+RRAF +G+IDLL+AE++ Sbjct: 85 PSSFTMEDMVEFTCHGGPVVVRHLLQALLD-SGCRLAEPGEFTRRAFLSGRIDLLQAEAI 143 Query: 132 ADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKE 191 ++I + TE R ++ M G LS + L + +E +LDFSE+ DV+ F S++ Sbjct: 144 GEMIHARTESAFRTAVTQMQGNLSRHLQEMRAGLLQSCALLELELDFSED-DVE-FQSRD 201 Query: 192 VLN-DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250 L ++ L+ +I + + G ++ G VI G NAGKS+L NAL + AIV+ + Sbjct: 202 ALRLEVGRLQGEILRLVESYREGHLLTEGVAAVIAGRPNAGKSTLLNALLGHERAIVSHM 261 Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL---KE 307 PGTTRD + E + +++DTAG+R +D+ VE EGI+R++ ++ ADL+L + E Sbjct: 262 PGTTRDYIEECFIHEKTMFRLTDTAGLRHSDEEVEHEGIRRSYRKISEADLMLYIIDSSE 321 Query: 308 INSKKEISFPKNI-------DFIFIGTKSDLYSTYTEEYDHL----------ISSFTGEG 350 + ++E + + + I + K+DL L +++ G+G Sbjct: 322 GDMQQEAAAARELRQRHPESRMIVVANKTDLAPDAGGMIAQLQSETACPVIAMAASKGDG 381 Query: 351 LEELINKIKSILS--NKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDIIAE 407 L EL + + ++ +K + + S RH L L+ A L ++IA Sbjct: 382 LNELKSTMAGMVEGLDKLHEASVLVTS-LRHYEALRNAADSLDNALQLITAREPAELIAF 440 Query: 408 NLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LR A +G+ITG V ++LL+ IF +FCIGK Sbjct: 441 ELRSALDYVGEITGKVVSQELLNTIFDQFCIGK 473 >gi|256830922|ref|YP_003159650.1| tRNA modification GTPase TrmE [Desulfomicrobium baculatum DSM 4028] gi|256580098|gb|ACU91234.1| tRNA modification GTPase TrmE [Desulfomicrobium baculatum DSM 4028] Length = 457 Score = 200 bits (508), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 150/463 (32%), Positives = 239/463 (51%), Gaps = 29/463 (6%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP-FPRKASLRYFFGL--D 57 MN +TI A++T AI I+RLSGPS ++ + +P F + G D Sbjct: 1 MNTNNDTIVAIATPPGQGAIGIVRLSGPSAGEIARSLFHSSRPGFTDFKPYQLHHGQLRD 60 Query: 58 GR--ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 GR LD+ L P P SFTGED E HGG A++ ++EE RLA GEFS+ Sbjct: 61 GRGNFLDEVLAAFMPGPGSFTGEDVVELQCHGGGAILRRVVEECLA-GGARLAEAGEFSK 119 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF N ++DL +AE++ +L+ + T + L+ + G L+ GQ L +R + Sbjct: 120 RAFLNTRMDLTQAEAIMELVGAPTAVAVGLAGSKLEGLLAHRIGQLRAGLESVRVQLCVA 179 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +DF E+E V+ + +++ DI ++ ++ G R+G +V+ G NAGKSSL Sbjct: 180 VDFPEDE-VECLAPQDLARDIAEIREAMAELADNYDRGRCWRDGALVVLAGQVNAGKSSL 238 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 NA+ + AIVTDIPGTTRD L + ++G V++ DTAG+R D VE GI+R+ Sbjct: 239 MNAILGINRAIVTDIPGTTRDYLEESVQIDGLPVRLVDTAGLRAALDSVELLGIERSREL 298 Query: 296 VENADLILLL--KEINSKKE-ISFPKNI-DFIFIGTKSDLYS---TYTEEYDH------L 342 + ADL+LL+ E+ E + + + + K DL + +T E Sbjct: 299 LARADLVLLVIDSELGPGAEDLDLAAETENLLVVANKMDLVAGEPAWTRESPWKDKELCR 358 Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFS-IPSHKRH--LYHLSQTVRYLEMASLNEKD 399 + + G+G+ L+ I+ +++ + +P+ ++H L ++ + +L L+E Sbjct: 359 LCAKHGQGVSGLLAAIRRMVAATGAPEAGTLVPNLRQHTALVRAAEELAHL----LDELA 414 Query: 400 CGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 GL DI++ L A L +ITG + E++L +F FCIGK Sbjct: 415 AGLPYDILSVRLDTACAILAEITGEITSEEVLRAVFDGFCIGK 457 >gi|329960747|ref|ZP_08299071.1| tRNA modification GTPase TrmE [Bacteroides fluxus YIT 12057] gi|328532462|gb|EGF59260.1| tRNA modification GTPase TrmE [Bacteroides fluxus YIT 12057] Length = 461 Score = 200 bits (508), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 147/464 (31%), Positives = 240/464 (51%), Gaps = 33/464 (7%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYF---FGL---DG 58 ++TI A++T A AI IR+SGP + I + + + FG D Sbjct: 3 QDTICAIAT-AQGGAIGCIRVSGPEAIDITSRIFTPAAAGKKLEDCKPYTLTFGRIYEDA 61 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 ++D+ L+ +F +P S+TGE+S E HG ++ +L+ L K R+A PGE+++R+F Sbjct: 62 EVVDEVLVSLFRAPHSYTGENSTEITCHGSNYILQKVLQLLIK-NGCRMAKPGEYTQRSF 120 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NGK+DL +AE++ADLI+S + RL+M M G S D+L H S IE +LDF Sbjct: 121 LNGKMDLSQAEAVADLIASSSAATHRLAMNQMRGGFSKELAALRDQLLHFTSLIELELDF 180 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 S+ E+++ E+ ++ IS + +G I++G + I+G +NAGKS+L N Sbjct: 181 SDHEELEFADRSELCQLAGSIEKVISRLVHSFSVGNAIKSGVPVAIIGETNAGKSTLLNV 240 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L ++ AIV+DI GTTRDV+ ++ G + DTAGIRET D +E GI+RTF +++ Sbjct: 241 LLNEEKAIVSDIHGTTRDVIEDTANIGGITFRFIDTAGIRETSDAIENLGIERTFQKLDQ 300 Query: 299 ADLILLL-------KEINSKKEISFP--KNIDFIFIGTKSDLY----STYTEEYDHLISS 345 A+++L + +I+ E P + I + K+DL +T + I S Sbjct: 301 AEIVLWMIDATDASAQISQLSEQILPHCEGKQLILVLNKADLVEKSSNTISINLPENIKS 360 Query: 346 FTGEGLEEL-INKIKSILSNKFKKLPFS-----IPSHKRH---LYHLSQTVRYLEMASLN 396 E++ I+ ++ +L LP I ++ RH L H + + ++ N Sbjct: 361 IRISAKEKMNIDGLQQMLITA-ANLPIVTQNDIIVTNIRHYEALSHALEAIHRVQQGLAN 419 Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + D +++++R L I G V + +L IF FCIGK Sbjct: 420 --NLSGDFVSQDIRECIFHLNDIAGEVTNDMVLQNIFGHFCIGK 461 >gi|193216965|ref|YP_002000207.1| tRNA modification GTPase TrmE [Mycoplasma arthritidis 158L3-1] gi|193002288|gb|ACF07503.1| tRNA modification GTPase TrmE [Mycoplasma arthritidis 158L3-1] Length = 442 Score = 199 bits (507), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 150/451 (33%), Positives = 234/451 (51%), Gaps = 28/451 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 + I A+S+G + AISIIR+ GP ++ + I K + + + D +D+ L Sbjct: 4 DNITAISSGNINQAISIIRICGPDAIEILKKIYTGKIGTDKTITYGWIVDKDKTKIDEVL 63 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + F ++ GED+ E + HGG+ V N IL L RLA GEF+RRAF NG++ L Sbjct: 64 VNFFIGKNNYIGEDTVEINAHGGVVVTNKILN-LILANGARLAERGEFTRRAFLNGRLSL 122 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ LI ++T Q ++++ E++ L ++L I S +E ++D+S+ D++ Sbjct: 123 EKAEAINALIHAKTNKQAKIAITQFEPEINQLINSLENELLQIISLVEINIDYSDYNDIE 182 Query: 186 NFSSKEVLNDIL-FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 K LN +L + I + + + I G I I+G N GKSSL NAL +KD Sbjct: 183 QMD-KNKLNKLLDNFQKRIKVVVEKSENASDIYRGINIAIVGKPNTGKSSLLNALIQKDK 241 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL- 303 AIVTDIPGTTRD++ + ++ G L +I DTAGIR+TD+ +E GIK++ ++NA +I+ Sbjct: 242 AIVTDIPGTTRDLVEAEFEINGILFRIIDTAGIRKTDNEIESIGIKKSLEAIDNAKVIIH 301 Query: 304 ----LLKEINSKKEI-SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKI 358 L K+ ++I K+ +I + K DL E D + S L EL Sbjct: 302 LHDPLQKDSTEDEQIKKLAKDKIYINVLNKRDLIKNLPE--DMVCISAKDNNLYEL---- 355 Query: 359 KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC--------GLDIIAENLR 410 ++ L K+ + K LY+ Q + L+ N D G +++ +L Sbjct: 356 RNALVKKYNDIDL---DDKEVLYNTRQ-LSLLKQVEYNINDALEGLGQGFGPEVVILDLT 411 Query: 411 LASVSLGKI-TGCVDVEQLLDIIFSKFCIGK 440 A +L I D E LLD IFSKFC+GK Sbjct: 412 KAWENLRSILNKSHDNEALLDNIFSKFCLGK 442 >gi|301162191|emb|CBW21736.1| putative tRNA modification GTPase [Bacteroides fragilis 638R] Length = 465 Score = 199 bits (507), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 155/475 (32%), Positives = 254/475 (53%), Gaps = 51/475 (10%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFI---CKKKKPFPRKASLRYFFG--LDGR 59 ++TI A++T A AI IR+SGP + I K K + FG +G Sbjct: 3 QDTICAIAT-AQGGAIGSIRVSGPEAITITGRIFTPAKSGKLLSEQKPYTLTFGRIYNGE 61 Query: 60 -ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 ++D+ L+ +F +P S+TGEDS E HG ++ +++ L K R+A PGE+++RAF Sbjct: 62 EMIDEVLVSLFRAPHSYTGEDSTEITCHGSSYILQQVMQLLIK-NGCRMAQPGEYTQRAF 120 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NGK+DL +AE++ADLI+S + RL++ M G S +KL + S IE +LDF Sbjct: 121 LNGKMDLSQAEAVADLIASSSAATHRLALSQMRGGFSKELTTLREKLLNFTSMIELELDF 180 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQG-KLGEIIRNGYKIVILGHSNAGKSSLFN 237 SEE DV+ F+ + L + ++ + ++ +G +I+NG + I+G +NAGKS+L N Sbjct: 181 SEE-DVE-FADRSALRRLADEIEEVIARLANSFSVGNVIKNGVPVAIIGETNAGKSTLLN 238 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 L +D AIV+DI GTTRDV+ +++ G + DTAGIRET D +E GI+RTF +++ Sbjct: 239 VLLNEDKAIVSDIHGTTRDVIEDTVNIGGITFRFIDTAGIRETSDTIESLGIERTFQKLD 298 Query: 298 NADLILLLKEINSKKEIS---------FPK--NIDFIFIGTKSDLYSTYTEEYDHLISSF 346 A+++L + I+S IS P+ + I + K +L + + + L S F Sbjct: 299 QAEIVLWM--IDSADAISQLTLLSDKILPRCEHKQLILVFNKVELINET--QKNELASQF 354 Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHK----RHLYHLSQ------TVRYLE----- 391 + E + ++I+SI + ++L + HL ++Q VR+ E Sbjct: 355 S----EHIGSEIESIFISAKQRLHTDELQQRLVAAAHLPAVTQNDVIVTNVRHYEALTRA 410 Query: 392 MASLNEKDCGL------DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + +++ GL D +++++R L I G V + +L IF+ FCIGK Sbjct: 411 LDAIHRVQEGLDANISGDFLSQDIRECIFHLSDIAGEVTNDMVLQNIFAHFCIGK 465 >gi|60680664|ref|YP_210808.1| tRNA modification GTPase TrmE [Bacteroides fragilis NCTC 9343] gi|81316267|sp|Q5LG80|MNME_BACFN RecName: Full=tRNA modification GTPase mnmE gi|60492098|emb|CAH06861.1| putative tRNA modification GTPase [Bacteroides fragilis NCTC 9343] Length = 465 Score = 199 bits (507), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 155/475 (32%), Positives = 254/475 (53%), Gaps = 51/475 (10%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFI---CKKKKPFPRKASLRYFFG--LDGR 59 ++TI A++T A AI IR+SGP + I K K + FG +G Sbjct: 3 QDTICAIAT-AQGGAIGSIRVSGPEAITITGRIFTPAKSGKLLSEQKPYTLTFGRIYNGE 61 Query: 60 -ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 ++D+ L+ +F +P S+TGEDS E HG ++ +++ L K R+A PGE+++RAF Sbjct: 62 EMIDEVLVSLFRAPHSYTGEDSTEITCHGSSYILQQVMQLLIK-NGCRMAQPGEYTQRAF 120 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NGK+DL +AE++ADLI+S + RL++ M G S +KL + S IE +LDF Sbjct: 121 LNGKMDLSQAEAVADLIASSSAATHRLALSQMRGGFSKELTTLREKLLNFTSMIELELDF 180 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQG-KLGEIIRNGYKIVILGHSNAGKSSLFN 237 SEE DV+ F+ + L + ++ + ++ +G +I+NG + I+G +NAGKS+L N Sbjct: 181 SEE-DVE-FADRSALRRLADEIEEVIARLANSFSVGNVIKNGVPVAIIGETNAGKSTLLN 238 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 L +D AIV+DI GTTRDV+ +++ G + DTAGIRET D +E GI+RTF +++ Sbjct: 239 VLLNEDKAIVSDIHGTTRDVIEDTVNIGGITFRFIDTAGIRETSDTIESLGIERTFQKLD 298 Query: 298 NADLILLLKEINSKKEIS---------FPK--NIDFIFIGTKSDLYSTYTEEYDHLISSF 346 A+++L + I+S IS P+ + I + K +L + + + L S F Sbjct: 299 QAEIVLWM--IDSADAISQLTLLSDKILPRCEHKQLILVFNKVELINET--QKNELASQF 354 Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHK----RHLYHLSQ------TVRYLE----- 391 + E + ++I+SI + ++L + HL ++Q VR+ E Sbjct: 355 S----EHIGSEIESIFISAKQRLHTDELQQRLVAAAHLPTVTQNDVIVTNVRHYEALTRA 410 Query: 392 MASLNEKDCGL------DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + +++ GL D +++++R L I G V + +L IF+ FCIGK Sbjct: 411 LDAIHRVQEGLDANISGDFLSQDIRECIFHLSDIAGEVTNDMVLQNIFAHFCIGK 465 >gi|315185859|gb|EFU19624.1| tRNA modification GTPase TrmE [Spirochaeta thermophila DSM 6578] Length = 449 Score = 199 bits (507), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 148/452 (32%), Positives = 239/452 (52%), Gaps = 25/452 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGLD---GRI 60 + I A++T SAI++IR SG C + + F +K R SL + +D G + Sbjct: 6 DRIVALATPWGRSAIAVIRASGAGCLEALDPLFRGRKTPSSMRGYSLAHGALVDPGTGEM 65 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+ LL VF +P S+TGED+AE HG A V I+ L + R A PGEF+ RAF N Sbjct: 66 LDEVLLAVFRAPHSYTGEDAAEISCHGSPAGVERIMRTL-RAHGFRAAEPGEFTLRAFLN 124 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GK+DL EAE++ +++S+ T L++ + G L + +K+ + + +E LD+ E Sbjct: 125 GKLDLTEAEAVHEVVSARTANAHTLALHRLEGRLRARIDAIKEKIASVVAEVEVQLDYPE 184 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E DV++ S ++ + +++ ++ ++G + R G ++V+ G +NAGKSSLFN Sbjct: 185 E-DVEHPVSAHLIQEA---SHEVDGLLATYRVGRLYREGVRVVLAGRTNAGKSSLFNLFM 240 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++D AIV+++ GTTRD L + L+G V + DTAGIR+ D VE EGI+RT + +AD Sbjct: 241 REDRAIVSEVHGTTRDYLEGWISLKGVPVLLYDTAGIRDGGDPVEAEGIRRTREILSHAD 300 Query: 301 LILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTE----------EYDHLISSFTGEG 350 ++ L ++ + +S + +G + L + + E +S TGEG Sbjct: 301 AVIYL--VDGTEGLSEGEEALIAELGAERPLIPVWNKVDASAVLPPPEGFIPLSCRTGEG 358 Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDIIAEN 408 L + + + +R L + LE + +L+ + LD +A Sbjct: 359 FARLEETLHRVFPEAEGGGAEVVIDSERQRDALVRCRDSLEGGLDALS-RGAPLDALAVY 417 Query: 409 LRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L A +LG+ITG V E +L+ IFS FC+GK Sbjct: 418 LHDAMEALGEITGEVTREDILERIFSCFCVGK 449 >gi|313202911|ref|YP_004041568.1| tRNA modification GTPase trme [Paludibacter propionicigenes WB4] gi|312442227|gb|ADQ78583.1| tRNA modification GTPase trmE [Paludibacter propionicigenes WB4] Length = 462 Score = 199 bits (507), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 160/472 (33%), Positives = 250/472 (52%), Gaps = 50/472 (10%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKK-PFPRKASLRYFFG--LDGR-- 59 TI A+ST I++IR+SG F+ FI +KK F + + FG ++G+ Sbjct: 3 TITAISTAPGTGGIAVIRVSGKDAFKNFNPIFIPRKKNFVFLEQEANTVSFGNIVNGKNE 62 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 I+D+ L+ VF +P SFTGED E HG + V IL+ L + LA PGEF++RAF Sbjct: 63 IVDEVLVSVFRAPHSFTGEDVVEISCHGSVFVQQQILQLLINQ-HCVLAQPGEFTQRAFL 121 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NGK+DL +AE++ADLI++ + R+++ M G SS + +L + S +E +LDF+ Sbjct: 122 NGKMDLSQAEAVADLIAANSAASHRMALNQMRGGFSSELLKLRTQLLNFVSLVELELDFN 181 Query: 180 EEE----DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 EE+ D S + L LK +S S LG ++NG + ++G +N GKS+L Sbjct: 182 EEDVEFADRTQLKSLATTIERLILK--LSDSFS---LGNALKNGIPVALVGETNVGKSTL 236 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N L +D AIV+DI GTTRDV+ ++++G + DTAGIR+T D +E GI+RT+ + Sbjct: 237 LNVLLNEDKAIVSDIHGTTRDVIEDSINIDGITFRFIDTAGIRDTKDKIENMGIERTYQK 296 Query: 296 VENADLILLLKEINSKKE-----------ISFPKNIDFIFIGTKSDLYSTYTEEYD---H 341 +E A ++L + + E S K + +F + + +E D Sbjct: 297 IEQASIVLWILDCTQLSEHMEWLTDRIAKRSAGKKVILVF----NKIDKIADDERDVLSQ 352 Query: 342 LISSFTGEGL----EELIN--KIKSILSNKFKKLPFSIP-----SHKRHLYHLSQTVRYL 390 L F GE + E IN K++ L+ K +LP P S+ RH L+ + Sbjct: 353 LFEQFEGERIYISARERINTDKLQKALT-KAAQLPDIHPGDVVVSNVRHYEALNHAHSAI 411 Query: 391 EMASLNEKDCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++ D G+ D +++++R LG+ITG + +++L IF KFCIGK Sbjct: 412 -CRVIDGLDAGISGDFLSQDIRECMHFLGEITGQISNDEILGNIFGKFCIGK 462 >gi|332655106|ref|ZP_08420847.1| tRNA modification GTPase TrmE [Ruminococcaceae bacterium D16] gi|332515966|gb|EGJ45575.1| tRNA modification GTPase TrmE [Ruminococcaceae bacterium D16] Length = 457 Score = 199 bits (507), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 151/464 (32%), Positives = 241/464 (51%), Gaps = 37/464 (7%) Query: 5 KETIFAVSTGALPSAISIIRLSGP-------SCFQVCEFICKKKKPFPRKASLRYFFGLD 57 ++TI A++T A+PSAI I+RLSGP +CF+ + P + L Y LD Sbjct: 3 QDTIAAMATPAVPSAIGILRLSGPRAVETASACFRPAAGNRLEDHPAHK---LVYGSLLD 59 Query: 58 --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 G ++D+ L P S+TGED+AE HG V+ LE L R A PGEF++ Sbjct: 60 AQGEVIDQVLCTYSRGPGSYTGEDTAELQCHGSPMVLTLGLEALFAQ-GARQAGPGEFTQ 118 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG++DL +AE++ADL+ + + R + +SG LS GQ L + + A Sbjct: 119 RAFLNGRLDLAQAEAVADLLDARSREGARHAAGRLSGALSRRVGQIYSALVDVMAHFHAV 178 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 LD+ +E D+ F+ ++ +D+ + ++ + G + G + ++G NAGKSSL Sbjct: 179 LDYPDE-DIDPFTLTKLEDDLSAQSRALHDLLATYQRGRRLNQGVRCALVGRPNAGKSSL 237 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 NAL D AIVTDIPGTTRD L +++L G +++ DTAG+R++ D +E+ G++R+ Sbjct: 238 LNALVGYDRAIVTDIPGTTRDTLEAEVELGGVPLRLIDTAGLRDSSDPIERLGVERSRQA 297 Query: 296 VENADLILLLKE--INSKKE--------ISFPKNIDFIFIGTKSDLYSTYTEEYDHL--- 342 +E A+LIL+L + + + +E +S I I TK+DL S + +L Sbjct: 298 MEEAELILVLWDSSVPATQEDGELLETALSLAPT---ILIHTKTDLPSAPV-PFLNLSPL 353 Query: 343 -----ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN- 396 +S+ TGEGL +L + + + S+ R + + +E A Sbjct: 354 PPVVELSTKTGEGLADLEAAVAQLFPKGSDSAYGELLSNARQAQAAQRALEGVERARQAL 413 Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E D + ++ A +LG++TG E + IF +FC+GK Sbjct: 414 EAGMTPDALLTDVEEALQALGELTGQSVGEDVTARIFQRFCVGK 457 >gi|257452996|ref|ZP_05618295.1| tRNA modification GTPase TrmE [Fusobacterium sp. 3_1_5R] gi|257466623|ref|ZP_05630934.1| tRNA modification GTPase TrmE [Fusobacterium gonidiaformans ATCC 25563] gi|315917778|ref|ZP_07914018.1| thiophene and furan oxidation protein THDF [Fusobacterium gonidiaformans ATCC 25563] gi|317059536|ref|ZP_07924021.1| thiophene and furan oxidation protein THDF [Fusobacterium sp. 3_1_5R] gi|313685212|gb|EFS22047.1| thiophene and furan oxidation protein THDF [Fusobacterium sp. 3_1_5R] gi|313691653|gb|EFS28488.1| thiophene and furan oxidation protein THDF [Fusobacterium gonidiaformans ATCC 25563] Length = 457 Score = 199 bits (507), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 157/462 (33%), Positives = 251/462 (54%), Gaps = 35/462 (7%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGLDGR-I 60 +TI A+ST ISI+R+SGP + E I KK P R + Y G I Sbjct: 4 DTIAAISTPRGEGGISIVRISGPESLHILEKIFFPKKNIPVKELRNYGIHYGHIKKGEEI 63 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+ L+ + +P ++T ED E + HGG + ILE L RLA GEF+RRAF + Sbjct: 64 IDEVLVSIMKAPNTYTREDIVEINCHGGYLITEKILE-LVLSSGARLAEMGEFTRRAFFH 122 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELS----SLYGQWIDKLTHIRSFIEADL 176 G+IDL +AE++ D+I +TE LSM + G+L SL +D HI L Sbjct: 123 GRIDLTQAEAVMDIIHGKTETSLSLSMNQLRGDLKEKILSLKKAILDLAAHINVV----L 178 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D+ EE + + + +L ++ + +I IS + G++I+ G K VI+G N GKSSL Sbjct: 179 DYPEE-GIDDPIPENLLKNLRQVSVEIKELISSYQKGKMIKEGVKTVIIGKPNVGKSSLL 237 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N++ +++ AIVT + GTTRD++ ++++G + + DTAGIR T D+VE G+ ++ + Sbjct: 238 NSILREERAIVTQVAGTTRDIIEEVINIKGIPLVLVDTAGIRNTTDLVENIGVMKSKEFL 297 Query: 297 ENADLILLL----KEINSKKE---ISFPKNIDFIFIGTKSDL-----YSTYTEEYDHL-I 343 + ADL+L + +E++ + E S +N I I K+DL S+ ++ + + I Sbjct: 298 QKADLVLFVLDASQELSKEDEEIYASLQENQKVIGILNKTDLEKKIQISSLSKIKNWIEI 357 Query: 344 SSFTGEGLEELINKI-KSILSNKF----KKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398 S+ G+EE+ KI + IL KKL + HK L +Q + + A++ E+ Sbjct: 358 SAMKYIGIEEMEEKIYQYILQENVEESSKKLILTNIRHKSALEKTNQAIENI-FATV-EQ 415 Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++A +++ A SL +ITG + E +LD IF FC+GK Sbjct: 416 GLPMDLMAVDIKEALDSLSEITGEISTEDVLDHIFHNFCVGK 457 >gi|94502356|ref|ZP_01308823.1| tRNA modification GTPase TrmE [Candidatus Sulcia muelleri str. Hc (Homalodisca coagulata)] gi|94451088|gb|EAT14046.1| tRNA modification GTPase TrmE [Candidatus Sulcia muelleri str. Hc (Homalodisca coagulata)] Length = 429 Score = 199 bits (507), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 143/401 (35%), Positives = 222/401 (55%), Gaps = 26/401 (6%) Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 +I+DK L+ +F P+S+TGED E HG I + N +L + RLANPGEF+ RAF Sbjct: 36 QIIDKVLIFLFKKPKSYTGEDIVEISCHGSIYIQNKLLSIIID-QGARLANPGEFTLRAF 94 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NGKIDL +AES+ D+++SET + ++ M G +S L + ++ ++ S IE +LDF Sbjct: 95 LNGKIDLCQAESILDIVNSETFFSHKFAINQMRGNISLLIRKLSKEIINLLSLIEFELDF 154 Query: 179 SEEED--VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 SEE + K++L +I+ + + I K+G ++NG + I+G N GKS+LF Sbjct: 155 SEENCNFINYLEFKKMLYNII---KKLKTLIRSFKIGNALKNGISVSIIGCPNVGKSTLF 211 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RETDDIVEKEGIKRTFLE 295 N L K + +IV++I GTTR+ + L + G + DTAGI T D +EK GIK+T+ + Sbjct: 212 NKLLKYERSIVSNIAGTTRNYIEDSLIINGIKFRFIDTAGINNNTKDYIEKLGIKKTYSK 271 Query: 296 VENADLIL----------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH---- 341 + +DLIL +LK++ S +E +PK I K DL +E+++ Sbjct: 272 INKSDLILYVFDDLNEKFILKKVKSLQE-KYPKKKI-FIIINKYDLIKKKIKEFNYKKIF 329 Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFS--IPSHKRHLYHLSQTVRYLEMASLNEKD 399 IS+ G G+ L+++I + S K L + + + RH + + YL N Sbjct: 330 KISAKYGYGVNNLLSEI-TFFSKKITSLKENTIVITQTRHYESFKKAIFYLYKVKKNLYS 388 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + ++ ++R A LGK+TG V E +L IFSKFCIGK Sbjct: 389 ISPEFLSIDIRTALDYLGKVTGEVTNEDILSNIFSKFCIGK 429 >gi|319945013|ref|ZP_08019275.1| tRNA modification GTPase TrmE [Lautropia mirabilis ATCC 51599] gi|319741583|gb|EFV94008.1| tRNA modification GTPase TrmE [Lautropia mirabilis ATCC 51599] Length = 518 Score = 199 bits (507), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 113/311 (36%), Positives = 173/311 (55%), Gaps = 8/311 (2%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPS----CFQVCEFICKKKKPFPRKASLRYFFGLDG 58 +K I A++T AI ++R+S P + + +++ RKA+ F D Sbjct: 2 QDKRPICAIATAPGQGAIGVVRVSAPEPDIITALAADILGPERRLVARKAAYGPFLAADA 61 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP---NLRLANPGEFSR 115 + +D GL + FP+P S+TGE E HGG V +L + ++ +RLA PGEF+ Sbjct: 62 QPIDYGLALWFPAPHSYTGEHILELQGHGGPVVQQILLRRVLQVGAAFGIRLAEPGEFTE 121 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF N K+DL++AE++ADLI + TE R + + G S ++L +R +EA Sbjct: 122 RAFLNDKLDLVQAEAVADLIEASTEQAARSATRSLQGVFSRQIDDLAEQLLTLRMLVEAT 181 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 LDF EEE + + + + + + + G +R G +V+ G N GKSSL Sbjct: 182 LDFPEEE-IDFLQKADAAGRLARIDDTLRRLFDTAQSGARLRQGLNVVLTGAPNVGKSSL 240 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 NALA +VAIVT I GTTRD + + +EG + + DTAG+R+TDD VEK GI+RT+ E Sbjct: 241 LNALAGAEVAIVTPIAGTTRDRVIEQISIEGVPINLIDTAGLRDTDDPVEKIGIQRTWAE 300 Query: 296 VENADLILLLK 306 +E AD+++ L+ Sbjct: 301 IEKADVVVHLR 311 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 40/100 (40%), Positives = 61/100 (61%), Gaps = 3/100 (3%) Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LNEKDC 400 +S+ TG+G+E K+ I + + I + +RHL LS+ + +L+ A ++ D Sbjct: 420 LSARTGQGIEAFRRKLLDIAGFQPGQEGVFI-ARERHLQALSEALSHLQNARQHVSLGDQ 478 Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LD+ AE LRLA +LG+ITG V + LL +IFS+FCIGK Sbjct: 479 ALDLFAEELRLAHQALGRITGAVTADDLLGVIFSRFCIGK 518 >gi|328947106|ref|YP_004364443.1| tRNA modification GTPase mnmE [Treponema succinifaciens DSM 2489] gi|328447430|gb|AEB13146.1| tRNA modification GTPase mnmE [Treponema succinifaciens DSM 2489] Length = 462 Score = 199 bits (507), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 154/474 (32%), Positives = 247/474 (52%), Gaps = 56/474 (11%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA--SLRYFFGLDGRI-- 60 +E I A++T +PSAI I+R SG +C ++ I +KK + A SL Y + D RI Sbjct: 7 EEPIAAIATALVPSAIGIVRTSGKNCIELVSKIFSRKKALLQAAGNSLVYGWIEDSRIQN 66 Query: 61 ----LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 +D+ +L V+ +P+SFTGED E HGG+ VV I L + R A GEF+ R Sbjct: 67 GNKKIDEVMLGVYKAPKSFTGEDMVEIFCHGGVNVVTSIFSLLLE-NGFRKAERGEFTFR 125 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGEL----SSLYGQWIDKLTHIRSFI 172 A+ NGK+DL +AE++ ++I S T R + +SG L SS+ +D + +I Sbjct: 126 AYINGKVDLTKAEAVKEIIDSRTNASRSRAAGRLSGNLFEQISSIKKLILDTIGNI---- 181 Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232 E ++++ E+E +N S + + + +S S K ++ ++G ++V+ G +NAGK Sbjct: 182 EVEIEYPEDE--ENISESFDTSLLKAAQKKLSDLASSWKAEKLYQDGARVVLCGKTNAGK 239 Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292 SSLFN+L K++ AIV+ I GTTRD L D G V++ DTAG+R+T D++E+ G++ Sbjct: 240 SSLFNSLLKEERAIVSSIEGTTRDWLECWTDFAGIPVRLFDTAGLRKTSDLIEERGVELA 299 Query: 293 FLEVENADLILLLKEINS---KKEISF---PKNIDFIFIGTKSDLYSTYTEEYDHL---- 342 ++AD+IL + + + K ++ F KNI + + K D + + + Sbjct: 300 KDLSQDADVILYIVDSSKGILKDDLDFIESQKNIPVVLVLNKCDSFDLNLDGIKKVWKDS 359 Query: 343 --ISSFTGEGLEELINKIKSIL--------------SNKFKKLPFSIPSHKRHLYHLSQT 386 IS+ G+E L+ K+K IL S + KK H +SQ Sbjct: 360 VKISAKNNIGIELLVFKVKDILFDGEKTEREQSGLGSARQKKSVQEALERVTHALEISQD 419 Query: 387 VRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 Y GLD + ++L A LG++ G V + +L+ IFS+FC+GK Sbjct: 420 FSY-----------GLDAVVQDLEDALECLGEVAGEVSPDDVLENIFSRFCVGK 462 >gi|22002507|gb|AAM82659.1| TrmE [Synechococcus elongatus PCC 7942] Length = 482 Score = 199 bits (506), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 146/462 (31%), Positives = 240/462 (51%), Gaps = 33/462 (7%) Query: 6 ETIFAVSTGALPS--AISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL----- 56 +TI A++T +P ++ I+RLSG + ++ F ++P+ S R +G Sbjct: 27 DTIAAIATAIVPQQGSVGIVRLSGAAATEIARQIFQIAGQQPWE---SHRILYGYIRDPE 83 Query: 57 DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 GR++D+ LL+ +P S+T ED E H HGG+ V L+ L RLA PGEF+ R Sbjct: 84 SGRLVDEALLLPMLAPRSYTREDVVELHCHGGLMPVQQTLQ-LCIRAGARLAEPGEFTLR 142 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NG++DL +AES+ADLIS+++ + ++ + G+L Q D+ I + +EA + Sbjct: 143 AFLNGRLDLSQAESIADLISAQSPQAAQAALGSLQGKLGHPIRQLRDRCLDILAEVEARI 202 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 DF E+D+ + + + +S + + G KI I+G N GKSSL Sbjct: 203 DF--EDDLPPLDLEAIAAQLTAAGAGHASDFINCRSRGTVAYGPKIAIVGRPNVGKSSLL 260 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 NA ++ D AIVTD+PGTTRD++ L + G V++ DTAGIRET D VE+ G++R+ Sbjct: 261 NAWSRCDRAIVTDLPGTTRDLVESQLIVGGIPVQVLDTAGIRETSDQVEQIGVERSRRAA 320 Query: 297 ENADLILLLKEIN---SKKEISFPKNID---FIFIGTKSDLYSTY--------TEEYDHL 342 ++ADL+LL + + S ++ + + + + + K D S +E+ + Sbjct: 321 QSADLVLLTIDASAGWSAEDQTIWEAVSDRPILLVINKRDRLSEAERHAIALPQQEFKAI 380 Query: 343 ISSFTG--EGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EK 398 + + +G+E+L I ++ + + ++R + L+ L + Sbjct: 381 VWTAAAQQQGIEDLEAAILAAVGTGDLTSANWDWALNQRQVAALTTAQTALRRVEETLQA 440 Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LD +LR A +LG ITG E +LD+IFS+FCIGK Sbjct: 441 QLPLDFWTIDLREAIAALGSITGEEIAESMLDLIFSRFCIGK 482 >gi|254558111|ref|YP_003064528.1| tRNA modification GTPase TrmE [Lactobacillus plantarum JDM1] gi|254047038|gb|ACT63831.1| tRNA modification GTPase TrmE [Lactobacillus plantarum JDM1] Length = 463 Score = 199 bits (506), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 148/479 (30%), Positives = 242/479 (50%), Gaps = 63/479 (13%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LDG--- 58 E +TI A+ST ISIIR+SG F V I K K R S +G +D Sbjct: 6 EFDTIAAISTPPGEGGISIIRISGDQTFNVVTQIFKGKD-LSRVQSHTINYGHIVDPDTH 64 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 + +D+ + V +P+++T ED E + HGG+ N IL+ L R+A PGEF++RAF Sbjct: 65 QEVDEVMATVMRAPKTYTREDVVEINCHGGLVATNEILQ-LILSHGARMAEPGEFTKRAF 123 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG++DL +AE++ DLI ++T+ ++++ + G+LS L + + + +E ++D+ Sbjct: 124 LNGRLDLSQAEAVMDLIRAKTDKSMKVALNQLDGDLSKLIRHLRQDILDVLAQVEVNIDY 183 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E + V+ ++K + + I+ ++ K G+++R G I+G N GKSSL N Sbjct: 184 PEYDAVETMTTKMLKEKATEVAQSINQLLATAKQGKVLREGLATAIIGRPNVGKSSLLNH 243 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L +D AIVTD+ GTTRDV+ +++ G +K+ DTAGIR+T+D VEK G++R+ + Sbjct: 244 LLHEDKAIVTDVAGTTRDVIEEYVNVRGVPLKLVDTAGIRDTEDKVEKIGVERSRKAIGA 303 Query: 299 ADLIL---------------LLKEINSKKEI------SFPKNIDFIFIGTKSDL------ 331 ADL+L LL+E + K I P +D + DL Sbjct: 304 ADLVLLVLDNSQPLTAEDRELLQETDQSKRIVILNKTDLPARLDQAELAQLVDLSDVLSM 363 Query: 332 ----YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV 387 S T+ + F EG+E N + + ++ RH+ L+Q Sbjct: 364 SVLEQSGVTQLEQRIAKMFFNEGIESSQNNV--------------MVTNARHIGLLNQAK 409 Query: 388 RYLEMASLNEKDCGL------DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + +L + GL D++ ++ LG+ITG ++LLD +FS+FC+GK Sbjct: 410 Q-----ALQDVQTGLVAGMPVDLVQIDMTRCWEFLGQITGDSYEDELLDQLFSQFCLGK 463 >gi|237752888|ref|ZP_04583368.1| tRNA modification GTPase TrmE [Helicobacter winghamensis ATCC BAA-430] gi|229375155|gb|EEO25246.1| tRNA modification GTPase TrmE [Helicobacter winghamensis ATCC BAA-430] Length = 462 Score = 199 bits (506), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 161/481 (33%), Positives = 246/481 (51%), Gaps = 69/481 (14%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVC------EFICKKKKPFPRKASLRYFFGLDGR 59 +TI A +T S+++++RLSG + + +F K PR A L + DG Sbjct: 5 DTIIAPATTYGQSSLNVLRLSGANALFIASKLARLDFNAIKSLIKPRLARLTKIYFEDGT 64 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 +LD+ +L+ F +P S+T ED EF HGG + IL+ K RLANPGEF++RAF Sbjct: 65 LLDECILLYFKAPNSYTTEDVIEFQCHGGSFIAQNILQTCLKF-GARLANPGEFTKRAFL 123 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELS----SLYGQWIDKLTHIRSFIEAD 175 G+IDL +A+++A LI S+ ++ M + GE+ +L I L H FI Sbjct: 124 GGRIDLSQAQAVAKLIESQNVNAHQMLMRHLKGEMQEFCENLRATLISFLAHSEVFI--- 180 Query: 176 LDFSEEEDVQNF--SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233 D+++EE Q+ + K+ L +L ++ + + Q + ++ +GYK+ I+G N GKS Sbjct: 181 -DYADEELPQDLLENLKQKLQVVL---KNLKALLEQSQNKRVLFDGYKLCIIGKPNVGKS 236 Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293 SL NAL + D AIV+DI GTTRD + + L GYL+++ DTAGIRE+ D VE EGIKR+ Sbjct: 237 SLLNALLRNDRAIVSDIAGTTRDSIEENFVLGGYLLRLIDTAGIRESTDAVENEGIKRSL 296 Query: 294 LEVENADLILLL------------KEINSKKEISFPKNIDFIFIGT--KSDLYSTYTEEY 339 + + +DL+L+L + I K K I + T K L S +E+ Sbjct: 297 EKAKESDLLLVLFDGSLPLSAEDFQIIELLKAYKLQKKILVLINKTDLKMQLESKVLDEF 356 Query: 340 --------------DHLISSFTGEGLEELIN---KIKSIL---SNKFKKLPFSIPSHKRH 379 D L+ F LEEL+N K++S+L +F+ + I + K Sbjct: 357 NPLLLSLKGDLLNEDSLLERFKLR-LEELLNENEKMESLLLVSEYQFQAVQECINALKNS 415 Query: 380 LYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIG 439 L L LE+ S + I E LR ++ IT + Q+LD++F FC+G Sbjct: 416 LNPLENG--ELELFSFH--------INEALR----AISTITKPYEYSQMLDVMFGDFCLG 461 Query: 440 K 440 K Sbjct: 462 K 462 >gi|58338215|ref|YP_194800.1| tRNA modification GTPase TrmE [Lactobacillus acidophilus NCFM] gi|227902598|ref|ZP_04020403.1| tRNA modification GTPase TrmE [Lactobacillus acidophilus ATCC 4796] gi|75357100|sp|Q5FHQ5|MNME_LACAC RecName: Full=tRNA modification GTPase mnmE gi|58255532|gb|AAV43769.1| thiophene and furan oxidation protein [Lactobacillus acidophilus NCFM] gi|227869687|gb|EEJ77108.1| tRNA modification GTPase TrmE [Lactobacillus acidophilus ATCC 4796] Length = 461 Score = 199 bits (506), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 155/471 (32%), Positives = 253/471 (53%), Gaps = 50/471 (10%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLD---G 58 E +TI A+ST ISI+R+SG ++ + K P ++ Y +D G Sbjct: 7 EFDTIAAISTPIGEGGISIVRMSGEDAIKIANEVFKGADLAQVPTH-TIHYGHIIDPDTG 65 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 + +D+ ++ V +P++FT ED E + HGGI V N IL+ L K R+A+PGEF++RAF Sbjct: 66 KTIDESMVTVLRAPKTFTCEDIVEINCHGGIVVTNHILQLLLKH-GARMADPGEFTKRAF 124 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFIEA 174 NG+IDL +AES+ D++ ++T+ R++++ + G ++ ++ + +D L ++ E Sbjct: 125 VNGRIDLTQAESVMDIVRAKTDKARQVAVSQLEGGLLHKIRTMRQEILDTLANV----EV 180 Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234 ++D+ E D ++ ++ + + I + + G+I+RNG I+G N GKSS Sbjct: 181 NIDYPEY-DADTVTANQMADTAKSVIEKIDRLLKTAQEGKILRNGLATAIVGQPNVGKSS 239 Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294 L N L + D AIVTD+ GTTRD L + ++G +++ DTAGI TDD VEK G++R+ Sbjct: 240 LLNYLTQSDKAIVTDVAGTTRDTLEEYVSVKGVPLELIDTAGIHHTDDKVEKIGVERSKK 299 Query: 295 EVENADLILLLKEINSKKEI-----SFPKNIDF---IFIGTKSDLYSTYTEEYDHLISSF 346 +E ADL+LLL I++ KE+ S D I I KSDL T E + Sbjct: 300 ALERADLVLLL--IDASKELTAEDKSLINETDSKKRIIILNKSDLGQKITVEQ---MKKL 354 Query: 347 TG--------------EGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391 TG + LEELINK+ + + N ++ + +++R L + LE Sbjct: 355 TGSEVISTSILKEDNMDELEELINKLFFAGIENSNDQV---MVTNQRQTSLLHKAKSELE 411 Query: 392 MASLNEKDCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + D G+ DI + A +LG+ITG ++L+ +FS+FC+GK Sbjct: 412 DV-IQAVDDGIPVDIAQIDFTGAWDTLGEITGESAPDELITQLFSQFCLGK 461 >gi|116630435|ref|YP_819588.1| tRNA modification GTPase TrmE [Lactobacillus gasseri ATCC 33323] gi|238853335|ref|ZP_04643715.1| tRNA modification GTPase TrmE [Lactobacillus gasseri 202-4] gi|282850777|ref|ZP_06260152.1| tRNA modification GTPase TrmE [Lactobacillus gasseri 224-1] gi|311111579|ref|ZP_07712976.1| tRNA modification GTPase TrmE [Lactobacillus gasseri MV-22] gi|122272628|sp|Q040F3|MNME_LACGA RecName: Full=tRNA modification GTPase mnmE gi|116096017|gb|ABJ61169.1| tRNA modification GTPase trmE [Lactobacillus gasseri ATCC 33323] gi|238834023|gb|EEQ26280.1| tRNA modification GTPase TrmE [Lactobacillus gasseri 202-4] gi|282558185|gb|EFB63772.1| tRNA modification GTPase TrmE [Lactobacillus gasseri 224-1] gi|311066733|gb|EFQ47073.1| tRNA modification GTPase TrmE [Lactobacillus gasseri MV-22] Length = 461 Score = 199 bits (506), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 152/465 (32%), Positives = 253/465 (54%), Gaps = 42/465 (9%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK----KKKPFPRKASLRYFFGLDGR-- 59 +TI A+ST ISI+RLSG + + K K P ++ Y +D + Sbjct: 9 DTIAAISTPIGEGGISIVRLSGEDAVAIANKLFKGADLTKVP---THTIHYGHIVDPKTK 65 Query: 60 -ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 ++D+ ++ V +P++FT ED E + HGG+ V N IL+ L R+A+PGEF++RAF Sbjct: 66 EVVDETMVSVLRAPKTFTREDMVEINCHGGMIVTNDILQ-LLLANGARMADPGEFTKRAF 124 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFIEA 174 NG+IDL +AES+ D++ ++T+ R+++M ++G ++ ++ + +D + H E Sbjct: 125 MNGRIDLTQAESVMDIVRAKTDKSRQVAMTQLAGGLLDKIKTMRQELLDTMAHE----EV 180 Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234 ++D+ E D+ + +S+E+ + I + + G+IIRNG I+G N GKSS Sbjct: 181 NIDYPEY-DMDDLTSQEMKKKAQEVSKQIEQLLQTAQEGKIIRNGLATAIVGRPNVGKSS 239 Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294 L N L + D AIVTDI GTTRD L + ++G +K+ DTAGI T+D VEK G++R+ Sbjct: 240 LLNYLTQDDKAIVTDIAGTTRDTLEEYVSVKGVPLKLIDTAGIHHTEDKVEKIGVERSKK 299 Query: 295 EVENADLILLLKEINS------KKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTG 348 ++ ADL+LLL + + K+ + N I I K DL + ++E +I T Sbjct: 300 AIKEADLVLLLLDASQDLTAEDKRLLDLTANKKRIIILNKQDLGTKISQE---MIKDITD 356 Query: 349 EGL---EELINKIKSILSNKFKKLPFS---------IPSHKRHLYHLSQTVRYLE-MASL 395 + L K L N +KL FS + +++R L++ + LE + S Sbjct: 357 NPIIVTSILKQKNMDALENAIEKLFFSGIENSQNQILVTNQRQAGLLTKAKQSLEDVISG 416 Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + LD++ +L+ A +LG+ITG ++L+ +FS+FC+GK Sbjct: 417 IDDAMPLDLVQIDLKNAWDTLGEITGESAPDELITQLFSQFCLGK 461 >gi|310825624|ref|YP_003957982.1| tRNA modification GTPase mnme [Stigmatella aurantiaca DW4/3-1] gi|309398696|gb|ADO76155.1| tRNA modification GTPase MnmE [Stigmatella aurantiaca DW4/3-1] Length = 427 Score = 199 bits (506), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 140/431 (32%), Positives = 225/431 (52%), Gaps = 14/431 (3%) Query: 20 ISIIRLSGPSCFQVCEFICK--KKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTG 77 + I+RLSGP+ +V + + P PR A L F G LD+GL + F +P SFTG Sbjct: 1 MGILRLSGPAALEVGRRLAPGIPEAPVPRHAYLASFVDAQGLTLDEGLFLYFRAPHSFTG 60 Query: 78 EDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISS 137 ED E HG ++ +L + + +R A PGEF+RRAF G+IDL AE++ADL+++ Sbjct: 61 EDVVELQAHGSPRLLQLLLARVLEDERVRPARPGEFTRRAFLQGRIDLTRAEAVADLVAA 120 Query: 138 ETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDIL 197 ++E R + G++G LS + L + + +E L+F +E + + + + Sbjct: 121 DSEAAVRAAAAGLAGALSHRVRALEEPLRALHADLEGVLNFPDEAEGADEGAG---PRVA 177 Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257 L+++ + +S+ G ++R G ++ + G NAGKS+LFN L + A+V PGTTRDV Sbjct: 178 ALRSEAEALLSEAGRGRLVRRGARVALYGPVNAGKSTLFNRLVGEARALVDAEPGTTRDV 237 Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL---KEINSKKE- 313 L ++ G + + DTAG+RET +E GI RT + + DL LL+ + + ++ E Sbjct: 238 LEARVEWNGLALSLLDTAGLRETPGRLEALGIARTRQTLASVDLALLVLPPEALPAEAEG 297 Query: 314 -ISFPKNIDFIFIGTKSDLYSTYTE---EYDHLISSFTGEGLEELINKIKSILSNKFKKL 369 + + K D+ + E +S TGEGLE L I S L + Sbjct: 298 WAHEAGATAVLRVAGKCDVAPSLPSPAWERGLRVSGRTGEGLEPLRAAILSHLWGEGTPA 357 Query: 370 PFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLL 429 ++ S +RH L + L A + L++++ + LA +LG+++G E LL Sbjct: 358 AVALVS-ERHADALRRAAEALGRAHEASRLSTLEVLSGEVGLALEALGEVSGTSASEALL 416 Query: 430 DIIFSKFCIGK 440 D IF +FCIGK Sbjct: 417 DAIFQRFCIGK 427 >gi|331089219|ref|ZP_08338121.1| tRNA modification GTPase TrmE [Lachnospiraceae bacterium 3_1_46FAA] gi|330405771|gb|EGG85300.1| tRNA modification GTPase TrmE [Lachnospiraceae bacterium 3_1_46FAA] Length = 465 Score = 199 bits (506), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 161/478 (33%), Positives = 247/478 (51%), Gaps = 57/478 (11%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF--PRKASLRYFFGLDGRI-- 60 KETI A+STG S I I+R+SG V + I + KK + ++ Y + +D I Sbjct: 3 KETIAAISTGMTNSGIGIVRISGEEAVLVADRIYRGKKKLCEVKSHTINYGYIVDREISS 62 Query: 61 --------LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGE 112 +D+ L+ V +P +FTGED+ E + HGG VV +LE + K A PGE Sbjct: 63 AEKKSEEVIDEVLVTVMKAPGTFTGEDTVEINCHGGTFVVKKVLELVLK-NGASPAEPGE 121 Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172 F++RAF NGK+DL +AE++ D+I+SE E + S+ + G + +K+ + +FI Sbjct: 122 FTKRAFLNGKMDLSQAEAVIDVINSENEYALQSSVSQLKGSVKKKINDIREKIIYHTAFI 181 Query: 173 EADLDFSEEEDVQNFS------SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILG 226 E LD E V +S ++E++ ++ L I G +I+ G K VI+G Sbjct: 182 ETALDDPEHISVDGYSDTLRSSAEEIIQELERL-------IHSADDGRVIKEGIKTVIVG 234 Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEK 286 NAGKSSL N LA + AIVTDI GTTRDVL + L + + DTAGIR+T+D++EK Sbjct: 235 KPNAGKSSLLNVLAGHERAIVTDIEGTTRDVLEETIKLGVLNLNVVDTAGIRQTEDLIEK 294 Query: 287 EGIKRTFLEVENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD 340 G+ + E ADLI+ + + N +K I+ + I + KSD+ + + E Sbjct: 295 IGVDKALEYAETADLIIYVVDASRSLDENDEKIINMISDKKSIVLLNKSDIDTVISAE-- 352 Query: 341 HL-----------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY 389 H+ IS+ G+++L +K+K + F K S + + ++ ++ Q Sbjct: 353 HIKEKVSNIPIISISAKEERGIKDLEDKVKEM----FLKGDISF-NDQVYISNVRQKNAL 407 Query: 390 LEMASLNEK-------DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LE +K + D + +L A SLG ITG E L++ IFSKFC+GK Sbjct: 408 LEALESMKKVIRSIDDNMPEDFYSIDLMDAYESLGYITGNSVGEDLINEIFSKFCMGK 465 >gi|53712463|ref|YP_098455.1| tRNA modification GTPase TrmE [Bacteroides fragilis YCH46] gi|81825067|sp|Q64X55|MNME_BACFR RecName: Full=tRNA modification GTPase mnmE gi|52215328|dbj|BAD47921.1| putative ThdF family GTPase [Bacteroides fragilis YCH46] Length = 465 Score = 199 bits (506), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 154/475 (32%), Positives = 254/475 (53%), Gaps = 51/475 (10%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFI---CKKKKPFPRKASLRYFFG--LDGR 59 ++TI A++T A AI IR+SGP + I K K + FG +G Sbjct: 3 QDTICAIAT-AQGGAIGSIRVSGPEAITITGRIFTPAKSGKLLSEQKPYTLTFGRIYNGE 61 Query: 60 -ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 ++D+ L+ +F +P S+TGEDS E HG ++ +++ L K R+A PGE+++RAF Sbjct: 62 EMIDEVLVSLFRAPHSYTGEDSTEITCHGSSYILQQVMQLLIK-NGCRMAQPGEYTQRAF 120 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NGK+DL +AE++ADLI+S + RL++ M G S +KL + S IE +LDF Sbjct: 121 LNGKMDLSQAEAVADLIASSSAATHRLALSQMRGGFSKELTTLREKLLNFTSMIELELDF 180 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQG-KLGEIIRNGYKIVILGHSNAGKSSLFN 237 SEE DV+ F+ + L + ++ + ++ +G +I+NG + I+G +NAGKS+L N Sbjct: 181 SEE-DVE-FADRSALRRLADEIEEVIARLANSFSVGNVIKNGVPVAIIGETNAGKSTLLN 238 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 L +D AIV+DI GTTRDV+ +++ G + DTAGIRET D +E GI+RTF +++ Sbjct: 239 VLLNEDKAIVSDIHGTTRDVIEDTVNIGGITFRFIDTAGIRETSDTIESLGIERTFQKLD 298 Query: 298 NADLILLLKEINSKKEIS---------FPK--NIDFIFIGTKSDLYSTYTEEYDHLISSF 346 A+++L + I+S IS P+ + I + K +L + + + L S F Sbjct: 299 QAEIVLWM--IDSADAISQLTLLSDKILPRCEHKQLILVFNKVELINET--QKNELASQF 354 Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHK----RHLYHLSQ------TVRYLE----- 391 + E + ++I+SI + ++L + HL ++Q +R+ E Sbjct: 355 S----EHIGSEIESIFISAKQRLHTDELQQRLVAAAHLPTVTQNDVIVTNIRHYEALTRA 410 Query: 392 MASLNEKDCGL------DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + +++ GL D +++++R L I G V + +L IF+ FCIGK Sbjct: 411 LDAIHRVQEGLDANISGDFLSQDIRECIFHLSDIAGEVTNDMVLQNIFAHFCIGK 465 >gi|317502978|ref|ZP_07961067.1| thiophene and furan oxidation protein ThdF [Prevotella salivae DSM 15606] gi|315665914|gb|EFV05492.1| thiophene and furan oxidation protein ThdF [Prevotella salivae DSM 15606] Length = 454 Score = 199 bits (505), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 148/459 (32%), Positives = 245/459 (53%), Gaps = 28/459 (6%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQV--CEFICKKKKPF--PRKASLRY--FFGLD 57 + TI A++T A AI I+R+SG ++ C F + K + SL Y + Sbjct: 2 DNHTICALAT-ATGGAIGIVRVSGEKAIEITDCIFKSTRLKTLCDAKGNSLHYGEVHDKE 60 Query: 58 GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 G ++D+ L+ +F SP S+TGEDS E HG ++ +++ L R A PGEF++RA Sbjct: 61 GNVIDEVLVSIFRSPHSYTGEDSTEISCHGSAFILGQVIKALID-SGCRQAEPGEFTKRA 119 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 + NGK+DL +AE++ADLI+S + +L++ + G SS Q ++L I S +E +LD Sbjct: 120 YLNGKMDLSQAEAVADLIASSNKASHQLALNQLKGHFSSELSQLREQLLKITSLLELELD 179 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 FS+ E+++ E+ +++ IS I + G ++ G + I+G +N GKS+L N Sbjct: 180 FSDHEELEFADRGELEALAEKIQHRISDLILSFETGNALKKGIPVAIVGKTNVGKSTLLN 239 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 L +D AIV++I GTTRD++ ++ G + DTAGIR+T+D VE+ GI++ F +++ Sbjct: 240 CLLHEDKAIVSNIHGTTRDIIEDTTEINGITFRFIDTAGIRKTEDYVEQLGIEKAFKKID 299 Query: 298 NADLILLL-------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------IS 344 A ++L +IN + ++ K + +F K D S + +HL IS Sbjct: 300 EASIVLWTIDQIPTADDINEMQRLTEGKKLLIVF--NKMDCLSQQQVD-NHLPFRVIYIS 356 Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL-- 402 + E + EL I + I ++ RH L++ ++ ++ GL Sbjct: 357 AKYKEHINELETAIYESADIPTIRENSVIVTNARHYEALARAKESIQRV-IDGIQLGLSG 415 Query: 403 DIIAENLRLASVSLGKITGC-VDVEQLLDIIFSKFCIGK 440 D+I+E+LRL LG+ITG + ++L IF FCIGK Sbjct: 416 DLISEDLRLCLEQLGEITGGQITTNEVLGNIFKHFCIGK 454 >gi|197294186|ref|YP_001798727.1| tRNA modification GTPase TrmE [Candidatus Phytoplasma australiense] gi|171853513|emb|CAM11355.1| tRNA modification GTPase [Candidatus Phytoplasma australiense] Length = 453 Score = 199 bits (505), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 150/456 (32%), Positives = 234/456 (51%), Gaps = 27/456 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK---KPFPRKASLRYFFGLDGRILD 62 +TI A++T IS+IR+SG I K K + + D ILD Sbjct: 4 DTIAAITTPLGTGGISVIRVSGAQAITEINKIFKGKNLLEALTHTVHHGFILNQDETILD 63 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 + L+ VF +P SFTGE+ E HGGI + +LE + + +LRLA PGEFS+RA+ NGK Sbjct: 64 EVLVSVFKAPNSFTGENVVEISAHGGILITQMVLERILTL-DLRLAYPGEFSQRAYMNGK 122 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 IDL++AE++ DLI + + +++ G+ S L +K+ + + IE ++D+ E + Sbjct: 123 IDLVQAEAIMDLIHATNQNAIKIANLGLHKHTSQLVSSLREKILTLIAQIEVNIDYPEYD 182 Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 D + + + L ++ + + + +R+G K +I+G N GKSSL NAL + Sbjct: 183 DTLLMTQSIIAPQVKSLIEELEAILFHSQKSRYLRDGIKTLIIGRPNVGKSSLLNALLNE 242 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 AIV+DI GTTRD + + +G + + DTAGI +T + +EK GI RT + +A+LI Sbjct: 243 PKAIVSDIAGTTRDFVDASFNCQGITLNLIDTAGIHQTTNPIEKIGISRTKKILSSAELI 302 Query: 303 LL-------LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL-----ISSFTGEG 350 LL LKE + +K + + I IG K+DL + T + ISS G Sbjct: 303 LLVLDQSEPLKE-DDEKLLELTRLKPRIIIGNKADLSNEKTVTSFPIKNFISISSLKKTG 361 Query: 351 LEELINKI------KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI 404 L+EL I + I S F FS H + Q ++ + A ++ +D+ Sbjct: 362 LDELQKAILQKFQLEQISSKDFNS--FSNVRHINQIQIAHQALKDFQTAFMDS--MPIDV 417 Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + +L A +LGKI G L+ +FSKFC+GK Sbjct: 418 YSIDLTKAYQALGKIIGDNQENDLIKELFSKFCLGK 453 >gi|118474837|ref|YP_891745.1| tRNA modification GTPase TrmE [Campylobacter fetus subsp. fetus 82-40] gi|205829129|sp|A0RNG2|MNME_CAMFF RecName: Full=tRNA modification GTPase mnmE gi|118414063|gb|ABK82483.1| tRNA modification GTPase TrmE [Campylobacter fetus subsp. fetus 82-40] Length = 438 Score = 199 bits (505), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 148/450 (32%), Positives = 243/450 (54%), Gaps = 29/450 (6%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF-PRKASLRYFFGLDGRILDKGL 65 I A+++ +ISI+RLSG + + +CKK P PR A LR + + LD+ + Sbjct: 2 NIVALASAYGVGSISIVRLSGDGAYDLAINLCKK--PLTPRYAHLRKLYCENMVFLDEAI 59 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 +I + +P SFTGED EF HGG+ V N I++EL ++ R+ANPGEFS+RAF NGK+DL Sbjct: 60 VIYYKAPFSFTGEDVVEFQTHGGVVVANLIIDELLRL-GARVANPGEFSKRAFLNGKMDL 118 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE--- 182 ++AES+ LI++ +E ++ M+GELS D+L I ++ E +D+++++ Sbjct: 119 VKAESIQSLINARSEGAAKILARTMNGELSVFVNSLRDELIKILAYTETCIDYADDDLPS 178 Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 D+ + S +LN L++ I +IS K G I +GYK+ I+G N GKSS+ N+L Sbjct: 179 DILHSSKDLLLNSYKKLEHII--NISNSKKGLI--DGYKVAIIGRPNVGKSSILNSLLHY 234 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADL 301 + AI ++ GTTRD + + +LV+I DTAGIR E D +E GI+ + AD+ Sbjct: 235 ERAITSETAGTTRDTIEEQIKFGSHLVRIIDTAGIRDEFDSSIEAAGIEYSKRAAREADI 294 Query: 302 ILLLKEINSKKEISFPKNIDF--------IFIGTKSDLYSTYTEEYDHLISSFTGEGL-- 351 I + + + K + + ++F I++ KSDL + + ++ S + Sbjct: 295 IFCVFDSSQKASLEDRQILEFISNLNKKTIYVLNKSDLEFKFDISLNAVLVSAKLDSTPL 354 Query: 352 -EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLR 410 +EL + + S +N + S R + ++ A + L++ A L Sbjct: 355 SKELESYLNSQDTNDI------MLSSNRQIEASRLASEAIKNALELLNESELELFAYELN 408 Query: 411 LASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +A +G IT ++ +LLD +FS FC+GK Sbjct: 409 IALKHIGSITKPMENSELLDKMFSSFCLGK 438 >gi|13507747|ref|NP_109696.1| tRNA modification GTPase TrmE [Mycoplasma pneumoniae M129] gi|2495119|sp|P75104|MNME_MYCPN RecName: Full=tRNA modification GTPase mnmE gi|1673806|gb|AAB95794.1| thiophene and furan oxidation protein [Mycoplasma pneumoniae M129] Length = 442 Score = 199 bits (505), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 140/454 (30%), Positives = 247/454 (54%), Gaps = 33/454 (7%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK-KPFPRKASLRYFFGLDGRILDK 63 K+T+FA++T SAI IIRLSGP +++ I K+ KP + + + + +D Sbjct: 4 KQTMFALATAPFNSAIHIIRLSGPDVYRIINQITNKEVKPLGMRIQRVWLIDHNQKKVDD 63 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 LL F +P S+TGED E HG + +VN I+ L K ++ A PGEF++R + NGK+ Sbjct: 64 VLLFKFVAPNSYTGEDLIEISCHGSMVIVNEIIGLLLKHGAVQ-AQPGEFTQRGYLNGKM 122 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 L +A S+ +L+ S + +++ ++G++ + ++KL + +E +LD+ E D Sbjct: 123 SLNQAASVNNLVLSPNTTLKDVALNALAGQVDARLEPLVEKLGQLVMQMEVNLDYPEYTD 182 Query: 184 VQN--FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 Q + + + I + N I + Q +L + ++ +KI I+G++N GKSSL NAL Sbjct: 183 EQRELVTMNQAVVQITQILNQIV--VGQDQLQRL-KDPFKIAIIGNTNVGKSSLLNALLD 239 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 +D AIV+ I G+TRD++ D L G+ VKI DTAGIR+ +EK GI++TF ++ A+L Sbjct: 240 QDKAIVSAIKGSTRDIVEGDFALNGHFVKILDTAGIRQHQSALEKAGIQKTFGAIKTANL 299 Query: 302 ILLLKEINSKKEISFPKNI--------DFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEE 353 ++ L +++++ PK I DF + K+DL ++ + S + ++ Sbjct: 300 VIYL--LDARQPEPDPKIIARLKKLKKDFFLVHNKADL----VQQSFQVSISAKQKQIQP 353 Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY------LEMASLNEKDC-GLDIIA 406 L++ + L ++F +S+ ++ +L QT+ LE + +++C DI+ Sbjct: 354 LVDLLTQYL-HQF----YSVEQNQLYLISDWQTILLQKAIAELEHFLIKQQNCLFFDILV 408 Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +LR A + ++ G L++ IF FC+GK Sbjct: 409 VHLRAAHEYILQVLGKNTNYDLINEIFKHFCLGK 442 >gi|194337753|ref|YP_002019547.1| tRNA modification GTPase TrmE [Pelodictyon phaeoclathratiforme BU-1] gi|194310230|gb|ACF44930.1| tRNA modification GTPase TrmE [Pelodictyon phaeoclathratiforme BU-1] Length = 473 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 155/471 (32%), Positives = 248/471 (52%), Gaps = 35/471 (7%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK----PFPRKASLRYFFGL 56 + ++ + A++T A++++R+SG F + + + +KK F R FG Sbjct: 7 LPRQEAPVAAIATPVGVGALAVLRISGEGVFDIAQKVFRKKNNPNFRFTASKGFRAHFGT 66 Query: 57 ----DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGE 112 +G ++D+ + +VF SP SFT ED EF HGG VV IL+ L RLA PGE Sbjct: 67 VHDSEG-LIDEVVALVFRSPNSFTMEDMVEFTCHGGPVVVQHILKVLLD-EGCRLAEPGE 124 Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172 F+RRAF NG+IDLL+AE++ ++I + TE R ++ M G LS + L + + Sbjct: 125 FTRRAFLNGRIDLLQAEAIGEMIHARTESAFRTAVTQMQGTLSLRLDAMRELLLRSCALL 184 Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232 E +LDFSEE DV+ S ++ ++ L+ ++ + + G +++ G VI G NAGK Sbjct: 185 ELELDFSEE-DVEFQSRTQLQEELAGLQEELHRLVDSYQHGRLLKEGVATVIAGLPNAGK 243 Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292 S+L N L ++ +IV+ +PGTTRD + E + +++DTAG+RE + VE EGI+R+ Sbjct: 244 STLLNVLLGEERSIVSHMPGTTRDYIEECFLYEKTMFRLTDTAGLREGGEEVEHEGIRRS 303 Query: 293 FLEVENADLILLLKEINSKK---EISFPK-------NIDFIFIGTKSDLYSTYTEEYDHL 342 F ++ ADL++ L +I+ + E+ + N I K DL + E L Sbjct: 304 FKKISEADLLVYLLDISLESYLDEVPLIRDLLERNSNARMIVAANKIDLATGSEERLQKL 363 Query: 343 ----------ISSFTGEGLEELINKIKSILSNKFKKLPFS--IPSHKRHLYHLSQTVRYL 390 +S+ GEGLE L ++ S + KL + + + RH L L Sbjct: 364 RAATGCEVCALSAAKGEGLEAL-KRLMSTMVEGLDKLHEASVLVTSLRHYEALRNASDAL 422 Query: 391 EMAS-LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A L + ++IA LR A +G+ITG V E+++++IF +FCIGK Sbjct: 423 ANAQELITRQAETELIAFELRSALDYVGEITGKVVSEEIVNLIFEQFCIGK 473 >gi|262341101|ref|YP_003283956.1| tRNA modification GTPase TrmE [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272438|gb|ACY40346.1| tRNA modification GTPase TrmE [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 464 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 156/468 (33%), Positives = 254/468 (54%), Gaps = 41/468 (8%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKAS-------LRYFFGLDG 58 +TI A++T SAIS+IRLSG + E I KP + + L Y + Sbjct: 5 DTIVALATPIGSSAISVIRLSGKTSISTVENIFLPIKPGKKLKNQSTHTIHLGYLIEENK 64 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 +LD+ L+ +F SP S+TGE+ E HG + IL+ L + +RLA PGEF+ RAF Sbjct: 65 NLLDQVLISIFKSPFSYTGENMIEISCHGSYYIQQQILQLLIR-KGIRLARPGEFTFRAF 123 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 N K+DL +AE++ADLISSE + +S++ + G LS+L KL S +E +LDF Sbjct: 124 LNKKVDLSQAEAVADLISSENKAYHEISLQQIKGRLSNLIKDLRIKLLDFASLLELELDF 183 Query: 179 SEEEDVQNFSSK-EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 SEE + F+++ E+ + + LK + I LG I+ G +VI+G N GKS+ FN Sbjct: 184 SEENVI--FANRSELFSFLQELKETLKDLIESFSLGNSIKKGVYVVIIGEPNVGKSTFFN 241 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 + ++D +IV+ I GTTRD + + L G L DTAGIR+T D +E G+++T +++ Sbjct: 242 QVIQEDRSIVSHIKGTTRDCIEGKIILNGILFHFYDTAGIRKTIDPIEVMGVEKTMKKMD 301 Query: 298 NADLIL---------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL 342 + +IL +++EI K + +P D I KSDL +Y +++ ++ Sbjct: 302 ESQMILYIFDSSSSEKKKQKRIVREIQ-KIQKKYPLK-DIFAIANKSDL--SYFQDFYNI 357 Query: 343 ---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA 393 IS+ ++++++ + ++ +FK+ + + RH L ++R + +A Sbjct: 358 KSKVSYFFEISARNRHEVKKVLDTLSNLFFERFKEKKI-VVTQSRHYEALKLSLREVLLA 416 Query: 394 SLN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +K D+++ ++ A LG+ITG V E++L IFSKFCIGK Sbjct: 417 DEALKKGLSEDLVSIYIKEALRYLGEITGEVTSEEILKNIFSKFCIGK 464 >gi|242310493|ref|ZP_04809648.1| tRNA modification GTPase TrmE [Helicobacter pullorum MIT 98-5489] gi|239522891|gb|EEQ62757.1| tRNA modification GTPase TrmE [Helicobacter pullorum MIT 98-5489] Length = 461 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 146/461 (31%), Positives = 246/461 (53%), Gaps = 32/461 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK--KKKPFPRKASLRYFFGLDGRILDK 63 +TI A +T S+++IIRLSG ++ + K K P R A L + +G +LD+ Sbjct: 7 DTIVAPATTYGKSSLNIIRLSGQDSLKIASKLAKIDLKNPKVRHAKLTKIYFENGELLDE 66 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 ++I F SP S+T ED EF HGG + ILEE K RLANPGEF++RAF G+I Sbjct: 67 CIIIYFKSPHSYTTEDVIEFQCHGGTFIAQNILEECLKY-GARLANPGEFTKRAFLGGRI 125 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL +A+++A LI S ++ M ++GE+ L + + E +D+++EE Sbjct: 126 DLSQAQAVAKLIESSNANAHKMLMRHLNGEMQEFCENLRTDLITLLAHSEVFIDYADEEL 185 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 Q+ K + N + + + S + Q + + GYK+ I+G N GKSS NAL + Sbjct: 186 PQDLL-KNLQNKLTSILKTLQSLLEQSIQKKSLFEGYKLCIIGKPNVGKSSFLNALLHNE 244 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303 AIV+DI GTTRD + + LEG+L+++ DTAGIR++ DI+E +GI+R+ + + +D+++ Sbjct: 245 RAIVSDIAGTTRDSIEENFVLEGHLLRLIDTAGIRKSQDIIENKGIERSLQKAKESDILI 304 Query: 304 LLKEINSKKE------ISFPKNID----FIFIGTKSDLYSTYTEEYDHLISSFTGEGL-- 351 L + + + I KN I + K+DL + + E ++ F L Sbjct: 305 ALFDSSRPLDHEDLEIIELLKNYQDSKKIIVLLNKTDLQNHFDSE---VLKPFLPLNLCL 361 Query: 352 -EELINKIKSILSNKFKKLPFSIPSHK---RHLYHLSQ--------TVRYLEMASLNEKD 399 +N +S+LSN FK S+ + + + L +SQ ++ L + + ++ Sbjct: 362 KNTNLNSQESLLSN-FKNHLISLLNSQESTQSLLLISQYQFQAVKNCIQALYDSKIPLEN 420 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L++ + ++ A ++ IT + Q+LD++F +FC+GK Sbjct: 421 GELELFSFHINEALRAIASITKPYEYSQMLDVMFGEFCLGK 461 >gi|301633488|gb|ADK87042.1| tRNA modification GTPase TrmE [Mycoplasma pneumoniae FH] Length = 442 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 140/454 (30%), Positives = 247/454 (54%), Gaps = 33/454 (7%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK-KPFPRKASLRYFFGLDGRILDK 63 K+T+FA++T SAI IIRLSGP +++ I K+ KP + + + + +D Sbjct: 4 KQTMFALATAPFNSAIHIIRLSGPDVYRIINQITNKEVKPLGMRIQRVWLIDHNQKKVDD 63 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 LL F +P S+TGED E HG + +VN I+ L K ++ A PGEF++R + NGK+ Sbjct: 64 VLLFKFVAPNSYTGEDLIEISCHGSMVIVNEIIGLLLKHGAVQ-AQPGEFTQRGYLNGKM 122 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 L +A S+ +L+ S + +++ ++G++ + ++KL + +E +LD+ E D Sbjct: 123 SLNQAASVNNLVLSPNTTLKDVALNALAGQVDARLEPLVEKLGQLVMQMEVNLDYPEYTD 182 Query: 184 VQN--FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 Q + + + I + N I + Q +L + ++ +KI I+G++N GKSSL NAL Sbjct: 183 EQRELVTMNQAVLQITQILNQIV--VGQDQLQRL-KDPFKIAIIGNTNVGKSSLLNALLD 239 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 +D AIV+ I G+TRD++ D L G+ VKI DTAGIR+ +EK GI++TF ++ A+L Sbjct: 240 QDKAIVSAIKGSTRDIVEGDFALNGHFVKILDTAGIRQHQSALEKAGIQKTFGAIKTANL 299 Query: 302 ILLLKEINSKKEISFPKNI--------DFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEE 353 ++ L +++++ PK I DF + K+DL ++ + S + ++ Sbjct: 300 VIYL--LDARQPEPDPKIIARLKKLKKDFFLVHNKADL----VQQSFQVSISAKQKQIQP 353 Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY------LEMASLNEKDC-GLDIIA 406 L++ + L ++F +S+ ++ +L QT+ LE + +++C DI+ Sbjct: 354 LVDLLTQYL-HQF----YSVEQNQLYLISDWQTILLQKAIAELEHFLIKQQNCLFFDILV 408 Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +LR A + ++ G L++ IF FC+GK Sbjct: 409 VHLRAAHEYILQVLGKNTNYDLINEIFKHFCLGK 442 >gi|260425018|ref|ZP_05733999.2| tRNA modification GTPase TrmE [Dialister invisus DSM 15470] gi|260403939|gb|EEW97486.1| tRNA modification GTPase TrmE [Dialister invisus DSM 15470] Length = 485 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 146/463 (31%), Positives = 245/463 (52%), Gaps = 30/463 (6%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFG--LDG 58 +E+ TI A++T I IIRLSG S ++ + F K K F +FG DG Sbjct: 28 YEETTIAAIATAPGEGGIGIIRLSGVSAAEIADKIFHTGKIKTFKEAVPYMMYFGHVTDG 87 Query: 59 -RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 + +D+GL + +P S+TGED E +HG + L LA A GEF++RA Sbjct: 88 EKRIDEGLAVYMKAPHSYTGEDVVEIQIHGSAEALRETLA-LALRSGAVPAMRGEFTKRA 146 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NG++DL +AE++ D+IS++ E + +SG LS +++L + + +E +D Sbjct: 147 FLNGRLDLAQAEAVMDIISAKGEAALTQAESHLSGALSGFVHGVMEELKDLITKLEVTID 206 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 + EE D+++ + +E + + + +S+ + + + G +IR G + I+G NAGKSSL N Sbjct: 207 YPEE-DLEDLTMEETGDALEKIDKSLSALLKRSEEGRVIREGLRTAIIGRPNAGKSSLLN 265 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 AL +++ AIVTD+PGTTRD + + + G + + DTAG+RETD+ VE+ GI+R +E Sbjct: 266 ALLQEERAIVTDVPGTTRDTIEEAVRISGVSLLLMDTAGLRETDNKVEQIGIERARASME 325 Query: 298 NADLIL---------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL 342 ADLIL +L + KK I D D++ Sbjct: 326 KADLILAVIDGSSPLDEEDKEILHSLVGKKAIVILNKYDLTPEVKAEDIWEIAGHVPVVS 385 Query: 343 ISSFTGEGLEELINKIKSILSNK---FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399 +S+ G G++EL +++ I + ++ F ++ RH+ + + + + A + ++ Sbjct: 386 LSARYGSGMDELREELRKITEKQDTDAGRILF--LTNLRHVELVRKALDNVLRARASVRE 443 Query: 400 CGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 GL D I +L A ++G+ITG ++L+ IFS+FC+GK Sbjct: 444 -GLQADFIVIDLTEAWKTMGEITGDTMDDELIHSIFSRFCVGK 485 >gi|240145748|ref|ZP_04744349.1| tRNA modification GTPase TrmE [Roseburia intestinalis L1-82] gi|257202164|gb|EEV00449.1| tRNA modification GTPase TrmE [Roseburia intestinalis L1-82] Length = 457 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 155/461 (33%), Positives = 246/461 (53%), Gaps = 33/461 (7%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFG----LDGR 59 +TI A++T S I IIR+SG + + F K K + +G +D Sbjct: 4 DTIAAIATAMSSSGIGIIRISGDEAVGIVDRIFSMKNGKKLSDMPTHTIHYGHIKDVD-E 62 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 ++D+ ++++ +P+S+T ED+ E HGG+ V+ +LE + K R A PGEF++RAF Sbjct: 63 VIDEVMVVLMRAPKSYTKEDTVEIDCHGGVYVMKRVLETVIKY-GARPAEPGEFTKRAFL 121 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NG+IDL +AES+ D+I ++ E + S + +SG LS+ + +KL H +FIE+ LD Sbjct: 122 NGRIDLAQAESVIDIIHAKNEFALKSSEQQLSGSLSAAVRKVREKLLHEIAFIESALDDP 181 Query: 180 EEEDVQNFSSKEVLNDILF-LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E + + E L+ I+ + +I ++ G+I++ G VI+G NAGKSSL N Sbjct: 182 EHISLDGYP--ETLHGIVEEAQKEIQKLLANSDNGKILKEGISTVIIGKPNAGKSSLLNT 239 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L ++ AIVTDI GTTRDVL ++L G ++ + DTAGIRETDD+VEK G+ R + Sbjct: 240 LVGEERAIVTDIAGTTRDVLEEQINLNGIILNVIDTAGIRETDDVVEKIGVDRAKKYLNE 299 Query: 299 ADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEE--YDHL------IS 344 ADL + + + +++ + + K+ I + KSDL E HL IS Sbjct: 300 ADLAIYVVDTSTQLDENDFEIMELLKDRKAIVLLNKSDLTPVTDSESIRKHLDKKMIAIS 359 Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFS---IPSHKRHLYHLSQTVRYLEMASLNEKDCG 401 + G+EEL I+ + ++ F+ ++ RH L + L + + D G Sbjct: 360 AKEQTGIEELEETIREMFFT--GEVTFNDEVYITNIRHKTALQEARNSLNLVVQSILD-G 416 Query: 402 L--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + D + +L A LG I G + L++ IFSKFC+GK Sbjct: 417 MPEDFYSIDLMNAYEELGSIVGEAVEDDLVNEIFSKFCMGK 457 >gi|237741002|ref|ZP_04571483.1| thiophene and furan oxidation protein thdf [Fusobacterium sp. 4_1_13] gi|229431046|gb|EEO41258.1| thiophene and furan oxidation protein thdf [Fusobacterium sp. 4_1_13] Length = 455 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 150/459 (32%), Positives = 243/459 (52%), Gaps = 31/459 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK---KKKPFPRKASLRYFFGLDG-RIL 61 +TI A+ST ISI+R+SG + E I K KK + S+ Y +D I+ Sbjct: 4 DTIAAISTPRGEGGISIVRMSGQDSLNILEKIFKPKNKKVSELKNYSINYGHIIDNEHIV 63 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121 D+ L+ + +P ++T ED E + HGG V +LE + K R+A GEF++RAF NG Sbjct: 64 DEVLVSIMKAPNTYTREDIIEINCHGGYLVTEKVLEVILK-NGARIAEIGEFTKRAFLNG 122 Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181 +IDL +AE++ D+I +TE LS+ + G+L + + + I LD+ EE Sbjct: 123 RIDLTQAEAVIDVIHGKTEKSLSLSLNQLRGDLRDKIATIKKSVLDLAAHINVVLDYPEE 182 Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 + + + +++++ +I +S G+II++G K I+G N GKSS+ N+L + Sbjct: 183 -GIDDPVPENLVDNLKKASAEIKDLVSSYDKGKIIKDGIKTAIIGKPNVGKSSILNSLLR 241 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 +D AIVT IPGTTRD++ +++ G + + DTAGIR TDDIVE G++++ + +ADL Sbjct: 242 EDRAIVTHIPGTTRDIIEEVININGIPLLLIDTAGIRNTDDIVENIGVEKSKELINSADL 301 Query: 302 ILLLKE---------------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF 346 IL + + IN+ K I ID I +DL E IS+ Sbjct: 302 ILYVIDTSREIDEEDYRIYDIINTDKVIGILNKID---IKRNTDLSEFPKIEKWIEISAL 358 Query: 347 TGEGLEELINKI-----KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401 + G++ L N+I K + + +KL + HK L ++ + L + + Sbjct: 359 SKTGIDNLENEIYKYIMKENVEDSSQKLVITNVRHKSALEKTNEAL--LNIIETIDMGLP 416 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++A +++ A SL ++TG + E LLD IFS FC+GK Sbjct: 417 MDLMAVDIKDALDSLSEVTGEISSEDLLDHIFSNFCVGK 455 >gi|161508218|ref|YP_001578189.1| tRNA modification GTPase TrmE [Lactobacillus helveticus DPC 4571] gi|205415770|sp|A8YTQ7|MNME_LACH4 RecName: Full=tRNA modification GTPase mnmE gi|160349207|gb|ABX27881.1| Thiophene and furan oxidation protein [Lactobacillus helveticus DPC 4571] Length = 461 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 149/469 (31%), Positives = 258/469 (55%), Gaps = 46/469 (9%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK----KKKPFPRKASLRYFFGLD-- 57 E +TI A+ST ISI+R+SG ++ + K K P ++ Y +D Sbjct: 7 EFDTIAAISTPIGEGGISIVRMSGEDAVKIANEVFKGADLTKVP---THTIHYGHIVDPD 63 Query: 58 -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 + +D+ ++ V +P++FT ED E + HGGI V N IL+ L R+A+PGEF++R Sbjct: 64 TDKTIDESMVTVLRAPKTFTREDIVEINCHGGIVVTNHILQLLLSH-GARMADPGEFTKR 122 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFI 172 AF NG+IDL +AES+ D++ ++T+ R++++ ++G ++ ++ + +D L ++ Sbjct: 123 AFVNGRIDLTQAESVMDIVRAKTDKARQVAVGQLAGGLLHKIQAMRQEILDTLANV---- 178 Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232 E ++D+ E D ++K++ + + I + + G+I+RNG I+G N GK Sbjct: 179 EVNIDYPEY-DADTVTAKQMADTAKSVIKKIDRLLKTAQEGKILRNGLATAIVGRPNVGK 237 Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292 SSL N L + D AIVTD+ GTTRD L + ++G +++ DTAGI TDD VEK G++R+ Sbjct: 238 SSLLNYLTQSDKAIVTDVAGTTRDTLEEYVSVKGVPLELIDTAGIHHTDDKVEKIGVERS 297 Query: 293 FLEVENADLILLLKEINSKKEISF--------PKNIDFIFIGTKSDLYSTYTEE------ 338 ++ ADL+LLL I++ +E++ K+ I + KSDL T + Sbjct: 298 KKALDRADLVLLL--IDASQELTAEDKALIEETKDKKRIIVLNKSDLGQKITVDEMKKQT 355 Query: 339 -YDHLISSFTGE----GLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE- 391 D +++S E LEELINK+ + + N ++ + +++R L++ + L+ Sbjct: 356 GSDVILTSILKEKNLDKLEELINKLFFAGIENSNDQV---MVTNQRQTSLLTKAKKELQD 412 Query: 392 MASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + E +DI + A +LG+ITG ++L+ +FS+FC+GK Sbjct: 413 VVQAVEDGIPIDIAQIDFTGAWDTLGEITGESAPDELVTQLFSQFCLGK 461 >gi|154499098|ref|ZP_02037476.1| hypothetical protein BACCAP_03090 [Bacteroides capillosus ATCC 29799] gi|150271938|gb|EDM99164.1| hypothetical protein BACCAP_03090 [Bacteroides capillosus ATCC 29799] Length = 458 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 152/476 (31%), Positives = 232/476 (48%), Gaps = 61/476 (12%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK--KKPFPRKASLRYFFGL----DGR 59 +TI AV+T AI I+RLSGP + + K + R +G +G Sbjct: 3 DTIAAVATPMARGAIGILRLSGPEAVRAASAVFKSVSGRALEEYEGRRLVYGTLYDREGN 62 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 +D+ L P S+TGED+AE HG AV+ LE L +R A PGEF+RRAF Sbjct: 63 AIDQVLATYTRGPGSYTGEDTAELQCHGSPAVLTLGLEALFAQ-GVRQAGPGEFTRRAFL 121 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NG++DL +AE++ADLI +ET R + +SG L D LT + + A LD+ Sbjct: 122 NGRLDLTQAEAVADLIDAETASAVRQAAGQLSGALGRRVAAVYDALTDLTAHFCAVLDYP 181 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 +E D+ F ++ + + + ++S+ ++ G + +G I+G NAGKSSL NAL Sbjct: 182 DE-DIDPFRAETMERALSQAQRELSALLATYGRGRQLVHGVPCAIVGRPNAGKSSLLNAL 240 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE-- 297 D AIVTDIPGTTRD + L G L+++ DTAG+R+T D VE+ G++R+ + Sbjct: 241 VGYDRAIVTDIPGTTRDTIEEKCRLGGVLLRLIDTAGLRDTTDTVEQLGVERSRAALAEA 300 Query: 298 -------------NADLILLLKEINSKKEISFPKNIDFIFIGTKSDL-------YSTYTE 337 A+ + +L++ + E I + TKSDL + + E Sbjct: 301 ELALVLIDPQGGVTAEDLAILEQARAAAE-------KVIVVLTKSDLDRGPCIGLTLWGE 353 Query: 338 EYDHLI--SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-- 393 ++ S+ TGEGLEEL + ++ P + + L R E A Sbjct: 354 NCPPVVSLSAKTGEGLEELEAAVAALF-----------PQGEENWGELLTNARQAEAAGR 402 Query: 394 -------SLNEKDCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +L+ G+ D + ++ A +LG +TG E + D IFS+FC+GK Sbjct: 403 ALEAVGSALSALTAGIPADAVFSDVEAALDALGALTGRSVQEDVTDRIFSRFCVGK 458 >gi|260101882|ref|ZP_05752119.1| tRNA modification GTPase TrmE [Lactobacillus helveticus DSM 20075] gi|260084310|gb|EEW68430.1| tRNA modification GTPase TrmE [Lactobacillus helveticus DSM 20075] gi|328463992|gb|EGF35490.1| tRNA modification GTPase TrmE [Lactobacillus helveticus MTCC 5463] Length = 461 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 149/469 (31%), Positives = 258/469 (55%), Gaps = 46/469 (9%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK----KKKPFPRKASLRYFFGLD-- 57 E +TI A+ST ISI+R+SG ++ + K K P ++ Y +D Sbjct: 7 EFDTIAAISTPIGEGGISIVRMSGEDAVKIANEVFKGADLTKVP---THTIHYGHIVDPD 63 Query: 58 -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 + +D+ ++ V +P++FT ED E + HGGI V N IL+ L R+A+PGEF++R Sbjct: 64 TDKTIDESMVTVLRAPKTFTREDIVEINCHGGIVVTNHILQLLLSH-GARMADPGEFTKR 122 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFI 172 AF NG+IDL +AES+ D++ ++T+ R++++ ++G ++ ++ + +D L ++ Sbjct: 123 AFVNGRIDLTQAESVMDIVRAKTDKARQVAVGQLAGGLLHKIQAMRQEILDTLANV---- 178 Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232 E ++D+ E D ++K++ + + I + + G+I+RNG I+G N GK Sbjct: 179 EVNIDYPEY-DADTVTAKQMTDTAKSVIKKIDRLLKTAQEGKILRNGLATAIVGRPNVGK 237 Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292 SSL N L + D AIVTD+ GTTRD L + ++G +++ DTAGI TDD VEK G++R+ Sbjct: 238 SSLLNYLTQSDKAIVTDVAGTTRDTLEEYVSVKGVPLELIDTAGIHHTDDKVEKIGVERS 297 Query: 293 FLEVENADLILLLKEINSKKEISF--------PKNIDFIFIGTKSDLYSTYTEE------ 338 ++ ADL+LLL I++ +E++ K+ I + KSDL T + Sbjct: 298 KKALDRADLVLLL--IDASQELTAEDKALIEETKDKKRIIVLNKSDLGQKITVDEMKKQT 355 Query: 339 -YDHLISSFTGE----GLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE- 391 D +++S E LEELINK+ + + N ++ + +++R L++ + L+ Sbjct: 356 GSDVILTSILKEKNLDKLEELINKLFFAGIENSNDQV---MVTNQRQTSLLTKAKKELQD 412 Query: 392 MASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + E +DI + A +LG+ITG ++L+ +FS+FC+GK Sbjct: 413 VVQAVEDGIPIDIAQIDFTGAWDTLGEITGESAPDELVTQLFSQFCLGK 461 >gi|34763011|ref|ZP_00143987.1| THIOPHENE AND FURAN OXIDATION PROTEIN THDF [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887312|gb|EAA24406.1| THIOPHENE AND FURAN OXIDATION PROTEIN THDF [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 455 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 150/459 (32%), Positives = 243/459 (52%), Gaps = 31/459 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK---KKKPFPRKASLRYFFGLDG-RIL 61 +TI A+ST ISI+R+SG + E I K KK + S+ Y +D I+ Sbjct: 4 DTIAAISTPRGEGGISIVRMSGQDSLNILEKIFKPKNKKVSELKNYSINYGHIIDNEHIV 63 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121 D+ L+ + +P ++T ED E + HGG V +LE + K R+A GEF++RAF NG Sbjct: 64 DEVLVSIMKAPNTYTREDIIEINCHGGYLVTEKVLEVVLK-NGARIAEIGEFTKRAFLNG 122 Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181 +IDL +AE++ D+I +TE LS+ + G+L + + + I LD+ EE Sbjct: 123 RIDLTQAEAVIDVIHGKTEKSLSLSLNQLRGDLRDKIATIKKSVLDLAAHINVVLDYPEE 182 Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 + + + +++++ +I +S G+II++G K I+G N GKSS+ N+L + Sbjct: 183 -GIDDPVPENLVDNLKKASAEIRDLVSSYNKGKIIKDGIKTAIIGKPNVGKSSILNSLLR 241 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 +D AIVT IPGTTRD++ +++ G + + DTAGIR TDDIVE G++++ + +ADL Sbjct: 242 EDRAIVTHIPGTTRDIIEEVININGIPLLLIDTAGIRNTDDIVENIGVEKSKELINSADL 301 Query: 302 ILLLKE---------------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF 346 IL + + IN+ K I ID I +DL E IS+ Sbjct: 302 ILYVIDTSREIDEEDYRIYDIINTDKVIGILNKID---IKRNTDLSEFPKIEKWIEISAL 358 Query: 347 TGEGLEELINKI-----KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401 + G++ L N+I K + + +KL + HK L ++ + L + + Sbjct: 359 SKTGIDNLENEIYKYIMKENVEDSSQKLVITNVRHKSALEKTNEAL--LNIIETIDMGLP 416 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++A +++ A SL ++TG + E LLD IFS FC+GK Sbjct: 417 MDLMAVDIKDALDSLSEVTGEISSEDLLDHIFSNFCVGK 455 >gi|148545139|ref|YP_001272509.1| tRNA modification GTPase TrmE [Lactobacillus reuteri DSM 20016] gi|184154471|ref|YP_001842812.1| tRNA modification GTPase TrmE [Lactobacillus reuteri JCM 1112] gi|148532173|gb|ABQ84172.1| tRNA modification GTPase trmE [Lactobacillus reuteri DSM 20016] gi|183225815|dbj|BAG26332.1| thiophene and furan oxidation protein ThdF [Lactobacillus reuteri JCM 1112] Length = 462 Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 143/463 (30%), Positives = 252/463 (54%), Gaps = 27/463 (5%) Query: 2 NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD-- 57 N E +TI A+ST ISIIR+SG +V + I K K + A+ +G +D Sbjct: 3 NSENDTIAAISTPVGEGGISIIRISGDDAVKVAQRIYKGKN-LAKVATHTINYGHIVDPD 61 Query: 58 -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 + +D+ ++ V +P ++T ED E + HGG+ N IL+ L R+A PGEF++R Sbjct: 62 TDQEVDEVMVSVMRAPHTYTREDVIEINCHGGLLATNRILQ-LVLSFGARMAEPGEFTKR 120 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NG++DL ++E++ DLI ++T+ ++++ + G+LS L + + + +E ++ Sbjct: 121 AFLNGRLDLSQSEAVMDLIRAKTDKSMKVALNQLDGDLSRLIRNLRQDILDVLAQVEVNI 180 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D+ E + V+ ++K + ++ I + K G+++R+G I+G N GKSSL Sbjct: 181 DYPEYDAVEEMTTKLLKEKAADIQQRIQGLLKTAKQGKVLRDGLATAIIGQPNVGKSSLL 240 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N+L +D AIVT++ GTTRDV+ +++ G +K+ DTAGIR+T+D VEK G++R+ + Sbjct: 241 NSLLHEDKAIVTNVAGTTRDVIEEYVNVNGVPLKLIDTAGIRDTNDQVEKIGVERSRKAL 300 Query: 297 ENADLILLLKEINSK------KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTG-- 348 ADL+LLL + ++K + + K+ I I K+DL L++ + Sbjct: 301 GAADLVLLLIDSSNKLTDEDRQLLEATKDKQRIIILNKTDLPRKVDLAELKLLAGKSAVI 360 Query: 349 -------EGLEELINKIKSILSNKF--KKLPFSIPSHKRHLYHLSQTVRYLE--MASLNE 397 EG+++L +I + N+ + ++ RH+ L Q L + +N+ Sbjct: 361 ETSIVNYEGMDQLGEQIGHMFFNEGIESNQNNVMVTNARHIGLLHQANDALSDVLKGIND 420 Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ ++ LG+ITG ++LLD +FS+FC+GK Sbjct: 421 G-MPVDLVQIDMTRCWELLGEITGDSYQDELLDQLFSQFCLGK 462 >gi|237743154|ref|ZP_04573635.1| thiophene and furan oxidation protein THDF [Fusobacterium sp. 7_1] gi|229433450|gb|EEO43662.1| thiophene and furan oxidation protein THDF [Fusobacterium sp. 7_1] Length = 455 Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 149/459 (32%), Positives = 243/459 (52%), Gaps = 31/459 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK---KKKPFPRKASLRYFFGLDG-RIL 61 +TI A+ST ISI+R+SG + E I + KK + S+ Y +D I+ Sbjct: 4 DTIAAISTPRGEGGISIVRMSGQDSLNILEKIFRPKNKKVSELKNCSINYGHIIDNEHIV 63 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121 D+ L+ + +P ++T ED E + HGG V +LE + K R+A GEF++RAF NG Sbjct: 64 DEVLVSIMKAPNTYTREDIVEINCHGGFLVTEKVLEVVLK-NGARIAEIGEFTKRAFLNG 122 Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181 +IDL +AE++ D+I +TE LS+ + G+L + + + I LD+ EE Sbjct: 123 RIDLTQAEAVIDVIHGKTEKSLSLSLNQLRGDLRDKIATIKKSVLDLAAHINVVLDYPEE 182 Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 + + + +++++ +I +S G+II++G K I+G N GKSS+ N+L + Sbjct: 183 -GIDDPVPENLVDNLKKASAEIKDLVSSYDKGKIIKDGIKTAIIGKPNVGKSSILNSLLR 241 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 +D AIVT IPGTTRD++ +++ G + + DTAGIR TDDI+E G++++ + +ADL Sbjct: 242 EDRAIVTHIPGTTRDIIEEVININGIPLLLVDTAGIRNTDDIIENIGVEKSKELINSADL 301 Query: 302 ILLLKE---------------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF 346 IL + + IN+ K I ID I DL E IS+ Sbjct: 302 ILYVIDTSRKIDEEDFRIYDIINTDKVIGILNKID---IKKDIDLSKFSKIEKWVEISAL 358 Query: 347 TGEGLEELINKIKSILSNK-----FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401 + G++ L N+I + N+ +KL + HK L ++ + L + +K Sbjct: 359 SKIGIDNLENEIYKFIMNENIEDSSQKLVITNVRHKSALEKTNEAL--LNIIETIDKGFP 416 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++A +++ A SL ++TG + E LLD IFS FC+GK Sbjct: 417 MDLMAVDIKDALDSLSEVTGEISSEDLLDHIFSNFCVGK 455 >gi|294673439|ref|YP_003574055.1| tRNA modification GTPase TrmE [Prevotella ruminicola 23] gi|294472346|gb|ADE81735.1| tRNA modification GTPase TrmE [Prevotella ruminicola 23] Length = 448 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 148/450 (32%), Positives = 241/450 (53%), Gaps = 20/450 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGR-ILDKG 64 +TI A++T A AI I+R+SG ++ + K + ++ Y +G I+D+ Sbjct: 4 DTICALAT-APGGAIGIVRISGNETLEILSRVFTKDLTNAQPNTIHYGHIRNGEEIVDEV 62 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 L+ VF +P S+TGE+SAE HG ++N +L L R A PGEF++RA+ NGK+D Sbjct: 63 LVSVFRAPHSYTGEESAEISCHGSRYILNKVLA-LLIANGCRQAGPGEFTQRAYLNGKMD 121 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ADLI+S + +++M + G SS Q ++L + S +E +LDFS+ ED+ Sbjct: 122 LSQAEAVADLIASTNQATHQIAMSQLRGHFSSKLAQLREQLLKLTSLLELELDFSDHEDL 181 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + E+++ + N I+ + G+ ++ G + I+G +N GKS+L N L K D Sbjct: 182 EFADRSELMDLTKTIDNHITRLAKSFETGQALKQGIPVAIVGKTNVGKSTLLNRLLKDDR 241 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIV+D+ GTTRD + +D+ G + DTAGIR+T D VE+ GI RT+ ++ A ++L Sbjct: 242 AIVSDVHGTTRDTIEDTIDINGITFRFIDTAGIRQTQDEVEQIGITRTYAAIDKARIVLW 301 Query: 305 LKEINSKKE-----ISFPKNIDFIFIGTKSDLYSTYTEEYDHL------ISSFTGEGLEE 353 L + E + +N I I K+D Y+ L IS+ G G+EE Sbjct: 302 LIDAEPSTEEINDILQHTENKKLIVIKNKAD--KADNNSYNLLNYPFITISAKFGTGIEE 359 Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDIIAENLRL 411 L I + I ++ RH L + ++ + L + G D+++E+LR Sbjct: 360 LEQAIYEAANIPALTENDIIVTNARHYDALVRAHDNIQRVIDGLQMQLSG-DLLSEDLRQ 418 Query: 412 ASVSLGKITGC-VDVEQLLDIIFSKFCIGK 440 A +L +ITG + ++L IF FC+GK Sbjct: 419 ALDTLAEITGGQITPNEVLGNIFKNFCVGK 448 >gi|15834695|ref|NP_296454.1| tRNA modification GTPase TrmE [Chlamydia muridarum Nigg] gi|270284862|ref|ZP_06194256.1| tRNA modification GTPase TrmE [Chlamydia muridarum Nigg] gi|270288890|ref|ZP_06195192.1| tRNA modification GTPase TrmE [Chlamydia muridarum Weiss] gi|301336241|ref|ZP_07224443.1| tRNA modification GTPase TrmE [Chlamydia muridarum MopnTet14] gi|14195291|sp|Q9PLM9|MNME_CHLMU RecName: Full=tRNA modification GTPase mnmE gi|8163124|gb|AAF73529.1| thiophene and furan oxidation protein ThdF [Chlamydia muridarum Nigg] Length = 444 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 154/455 (33%), Positives = 230/455 (50%), Gaps = 31/455 (6%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRI 60 + +TI A++T +++I+R+SGP + I AS G + Sbjct: 3 QNDTIAAIATPPGEGSVAIVRVSGPDAISISNRIFSGN--IAGYASHTAHLGTVVHNEVC 60 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+ L+++ +P SFTGED EF HGG + IL L R A PGEFS+RAF N Sbjct: 61 IDQALVLIMRTPRSFTGEDIVEFQCHGGYFACSQILNALLA-EGARAALPGEFSQRAFLN 119 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GKIDL++AE++ LIS+E ++ G S + ++IE DF E Sbjct: 120 GKIDLIQAEAIQQLISAENIDAFHIAQNQFQGHTSQAISSISSLIIEALAYIEVLADFPE 179 Query: 181 EEDVQNFSSKEV--LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E D++ S V + + L + ++ S +G+ + G IV+ G NAGKSS+ NA Sbjct: 180 E-DIETERSLPVQKITEALTITQELLSSFDEGQR---LAQGTSIVLAGLPNAGKSSILNA 235 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L +K+ AIVTDIPGTTRD+L + L+G +++ D+AGIRET++IVEKEGI+R + Sbjct: 236 LTQKNRAIVTDIPGTTRDILEENWVLQGKNLRLIDSAGIRETENIVEKEGIERARQAMSQ 295 Query: 299 ADLILLLKEINSKKEISFPKNI---DFIFIGTKSDLYSTYTEEYDH---LISSFTGEGLE 352 A+ IL + + S+ FP + I + K D+ S E +S+ TG+G Sbjct: 296 AEGILWVMDA-SQPVPEFPAILYQKPTILLWNKCDVASPPQLEVPFQQIFVSAKTGKGFS 354 Query: 353 ELINKIKSILSN----KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE---KDCGLDII 405 EL + L K K+ F + + L H T + E +C + Sbjct: 355 ELRQALNKWLHTTQLGKSSKV-FLVSARHHSLLHAVHTCLTDALTGFQEHLPNEC----L 409 Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A +LR A S+G ++G E +L IFSKFCIGK Sbjct: 410 ALDLRQALHSIGNLSGSEVTENVLGEIFSKFCIGK 444 >gi|197302262|ref|ZP_03167321.1| hypothetical protein RUMLAC_00989 [Ruminococcus lactaris ATCC 29176] gi|197298693|gb|EDY33234.1| hypothetical protein RUMLAC_00989 [Ruminococcus lactaris ATCC 29176] Length = 477 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 129/344 (37%), Positives = 194/344 (56%), Gaps = 15/344 (4%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LDGR-IL 61 K+TI A+STG S I I+RLSG ++ + + + K+ S +G DG + Sbjct: 3 KDTIAAISTGMTNSGIGIVRLSGNEALEIADKVYRGKEKITEVPSHTIHYGHIADGEETV 62 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121 D+ L++V P +FTGED+ E + HGG VV+ +LE + K R A PGEF++RAF NG Sbjct: 63 DEVLMMVMHGPRTFTGEDTVEINCHGGTYVVSRVLETVLKY-GARAAEPGEFTKRAFLNG 121 Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181 K+DL +AE++ DLI+SE E + S+ + G + S + K+ + +FIE LD E Sbjct: 122 KMDLSQAEAVIDLINSENEYALQSSVSQLKGSVKSAINELRSKILYHTAFIETALDDPEH 181 Query: 182 EDVQNFSS--KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 V + K V +I+ + I G I++ G + VI+G NAGKSSL N L Sbjct: 182 ISVDGYGEILKGVSEEII---EKLQKLIDSADDGRIMKEGIQTVIVGKPNAGKSSLLNLL 238 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 A + AIVTDI GTTRDVL + L+G + + DTAGIR+T+D+VEK G+ + + A Sbjct: 239 AGHERAIVTDIAGTTRDVLEEQIRLQGLNLNVIDTAGIRQTEDLVEKMGVDKAKEYAQKA 298 Query: 300 DLILLLKEINSKKEISFPKNIDFIF------IGTKSDLYSTYTE 337 DLI+ + + + K + + K ++ I+ + KSDL + E Sbjct: 299 DLIIYVVDASKKLDENDEKIMELIYDKKAIILLNKSDLETVVDE 342 >gi|77920732|ref|YP_358547.1| tRNA modification GTPase TrmE [Pelobacter carbinolicus DSM 2380] gi|77546815|gb|ABA90377.1| tRNA modification GTPase trmE [Pelobacter carbinolicus DSM 2380] Length = 461 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 147/459 (32%), Positives = 240/459 (52%), Gaps = 31/459 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL----DGRIL 61 +TI A +T I I+RLSG ++ ++ R S ++G G+I+ Sbjct: 10 DTIVAPATAPGEGGIGIVRLSGSGAEKLLLKFFSPRRFCERLDSHFLYYGKFTDETGKIV 69 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121 D+ + ++ P S+T ED E H HGG +V I++ RLA PGEF+ RAF NG Sbjct: 70 DEVMAVIMRKPRSYTREDVVEIHCHGGGLLVRSIIDVFLA-AGARLARPGEFTLRAFLNG 128 Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181 +IDL +AE++ DLI S + + +++ + G L+ G + + + + +EA +DF EE Sbjct: 129 RIDLTQAEAVIDLIRSRSNLASDVALSQLEGRLAQQIGVFGQVIADLLAQVEAAIDFPEE 188 Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 D++ + + L D+ I + G ++R G +++I G N GKSSL N L Sbjct: 189 -DIELDDQQMLGASAGALIADMDRIIDTFESGRVLREGLRVLIFGKPNVGKSSLMNGLLG 247 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 + AIVTDIPGTTRD + DL L G ++I DTAGIR T D VE+EG++R +VE+ADL Sbjct: 248 EARAIVTDIPGTTRDTIEEDLVLGGLPLRIVDTAGIRNTLDPVEEEGVRRARSKVESADL 307 Query: 302 ILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYS-TYTEEYDHL----ISSFTG 348 +LL+ I+ +E+ F +N + + + K DL + + D L S Sbjct: 308 VLLV--IDGSQEMGEDDLLALEFCRNREVLVVINKCDLATLPISSALDGLPYVRTSVLEK 365 Query: 349 EGLEELINKIK------SILSNKFKKLPFSIPSHKRHLYHLSQTV-RYLEMASLNEKDCG 401 GL+ L++ I+ + ++ + + + H++ L Q++ R+ E + Sbjct: 366 NGLDGLVSAIQERFVHNAHVAENRETVVLTQRRHRQALVKARQSLGRFRETLV---QGMS 422 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + A LR A ++G+ITG + +L+ IF++FCIGK Sbjct: 423 PEFGAVELRDALDAVGEITGETTPDDILERIFTRFCIGK 461 >gi|205422380|sp|Q39ZT0|MNME_PELCD RecName: Full=tRNA modification GTPase mnmE Length = 456 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 147/459 (32%), Positives = 240/459 (52%), Gaps = 31/459 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL----DGRIL 61 +TI A +T I I+RLSG ++ ++ R S ++G G+I+ Sbjct: 5 DTIVAPATAPGEGGIGIVRLSGSGAEKLLLKFFSPRRFCERLDSHFLYYGKFTDETGKIV 64 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121 D+ + ++ P S+T ED E H HGG +V I++ RLA PGEF+ RAF NG Sbjct: 65 DEVMAVIMRKPRSYTREDVVEIHCHGGGLLVRSIIDVFLA-AGARLARPGEFTLRAFLNG 123 Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181 +IDL +AE++ DLI S + + +++ + G L+ G + + + + +EA +DF EE Sbjct: 124 RIDLTQAEAVIDLIRSRSNLASDVALSQLEGRLAQQIGVFGQVIADLLAQVEAAIDFPEE 183 Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 D++ + + L D+ I + G ++R G +++I G N GKSSL N L Sbjct: 184 -DIELDDQQMLGASAGALIADMDRIIDTFESGRVLREGLRVLIFGKPNVGKSSLMNGLLG 242 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 + AIVTDIPGTTRD + DL L G ++I DTAGIR T D VE+EG++R +VE+ADL Sbjct: 243 EARAIVTDIPGTTRDTIEEDLVLGGLPLRIVDTAGIRNTLDPVEEEGVRRARSKVESADL 302 Query: 302 ILLLKEINSKKEIS--------FPKNIDFIFIGTKSDLYS-TYTEEYDHL----ISSFTG 348 +LL+ I+ +E+ F +N + + + K DL + + D L S Sbjct: 303 VLLV--IDGSQEMGEDDLLALEFCRNREVLVVINKCDLATLPISSALDGLPYVRTSVLEK 360 Query: 349 EGLEELINKIK------SILSNKFKKLPFSIPSHKRHLYHLSQTV-RYLEMASLNEKDCG 401 GL+ L++ I+ + ++ + + + H++ L Q++ R+ E + Sbjct: 361 NGLDGLVSAIQERFVHNAHVAENRETVVLTQRRHRQALVKARQSLGRFRETLV---QGMS 417 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + A LR A ++G+ITG + +L+ IF++FCIGK Sbjct: 418 PEFGAVELRDALDAVGEITGETTPDDILERIFTRFCIGK 456 >gi|227364302|ref|ZP_03848395.1| tRNA modification GTPase TrmE [Lactobacillus reuteri MM2-3] gi|325683501|ref|ZP_08163017.1| tRNA modification GTPase TrmE [Lactobacillus reuteri MM4-1A] gi|227070615|gb|EEI08945.1| tRNA modification GTPase TrmE [Lactobacillus reuteri MM2-3] gi|324977851|gb|EGC14802.1| tRNA modification GTPase TrmE [Lactobacillus reuteri MM4-1A] Length = 477 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 143/463 (30%), Positives = 252/463 (54%), Gaps = 27/463 (5%) Query: 2 NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD-- 57 N E +TI A+ST ISIIR+SG +V + I K K + A+ +G +D Sbjct: 18 NSENDTIAAISTPVGEGGISIIRISGDDAVKVAQRIYKGKN-LAKVATHTINYGHIVDPD 76 Query: 58 -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 + +D+ ++ V +P ++T ED E + HGG+ N IL+ L R+A PGEF++R Sbjct: 77 TDQEVDEVMVSVMRAPHTYTREDVIEINCHGGLLATNRILQ-LVLSFGARMAEPGEFTKR 135 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NG++DL ++E++ DLI ++T+ ++++ + G+LS L + + + +E ++ Sbjct: 136 AFLNGRLDLSQSEAVMDLIRAKTDKSMKVALNQLDGDLSRLIRNLRQDILDVLAQVEVNI 195 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D+ E + V+ ++K + ++ I + K G+++R+G I+G N GKSSL Sbjct: 196 DYPEYDAVEEMTTKLLKEKAADIQQRIQGLLKTAKQGKVLRDGLATAIIGQPNVGKSSLL 255 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N+L +D AIVT++ GTTRDV+ +++ G +K+ DTAGIR+T+D VEK G++R+ + Sbjct: 256 NSLLHEDKAIVTNVAGTTRDVIEEYVNVNGVPLKLIDTAGIRDTNDQVEKIGVERSRKAL 315 Query: 297 ENADLILLLKEINSK------KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTG-- 348 ADL+LLL + ++K + + K+ I I K+DL L++ + Sbjct: 316 GAADLVLLLIDSSNKLTDEDRQLLEATKDKQRIIILNKTDLPRKVDLAELKLLAGKSAVI 375 Query: 349 -------EGLEELINKIKSILSNKF--KKLPFSIPSHKRHLYHLSQTVRYLE--MASLNE 397 EG+++L +I + N+ + ++ RH+ L Q L + +N+ Sbjct: 376 ETSIVNYEGMDQLGEQIGHMFFNEGIESNQNNVMVTNARHIGLLHQANDALSDVLKGIND 435 Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ ++ LG+ITG ++LLD +FS+FC+GK Sbjct: 436 G-MPVDLVQIDMTRCWELLGEITGDSYQDELLDQLFSQFCLGK 477 >gi|299140501|ref|ZP_07033639.1| tRNA modification GTPase TrmE [Prevotella oris C735] gi|298577467|gb|EFI49335.1| tRNA modification GTPase TrmE [Prevotella oris C735] Length = 455 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 145/464 (31%), Positives = 244/464 (52%), Gaps = 44/464 (9%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFI---CKKKKPFPRKASLRYFFGL---DGRI 60 TI A++T A AI I+R+SG ++ + + KK K + ++ + G I Sbjct: 6 TICALATSA-GGAIGIVRVSGDKAIEITDRVFSGIGKKSLLEAKGNTVHYGEIHDQQGNI 64 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+ L+ VF +P S+TGED E HG V++ +++ L R A PGEF++RA+ N Sbjct: 65 IDEVLVSVFRAPHSYTGEDCTEISCHGSTYVLSQVVKVLID-AGCRQAAPGEFTKRAYLN 123 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GK+DL +AE++ADLI+S + +L++ + G SS + ++L I S +E +LDFS+ Sbjct: 124 GKMDLSQAEAVADLIASTNKASHKLALSQLKGHFSSELSRLREQLLKITSLLELELDFSD 183 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E+++ E+ + I++ I + G ++ G + I+G +N GKS+L N L Sbjct: 184 HEELEFADRSELKTLAEKIHGRIATLIHSFETGNALKKGIPVAIIGKTNVGKSTLLNCLL 243 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 +D AIV++I GTTRDV+ +++G + DTAGIRET D+VE+ GI+R + ++ A Sbjct: 244 HEDKAIVSNIHGTTRDVIEDTTEIKGVTFRFIDTAGIRETKDVVEQLGIERAYKKIGEAT 303 Query: 301 LILLL-------KEINSKKEISFPKNIDFIF----------IGTKSDLYSTYTEEYDHLI 343 ++L + +E ++++ K + +F I S L+ Y I Sbjct: 304 IVLWVVDEQPTTEEYTEIQQLTAEKKLLLVFNKMDRKEFKPITINSKLHVIY-------I 356 Query: 344 SSFTGEGLEEL---INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV-RYLEMASLNEKD 399 S+ + + EL I ++ I + + H L H + ++ R +E D Sbjct: 357 SAKHKQNMAELETAIYEVADIPEITENSIIVTNARHYEALVHANDSILRVIEAM-----D 411 Query: 400 CGL--DIIAENLRLASVSLGKITGC-VDVEQLLDIIFSKFCIGK 440 GL D+I+E+LRL L +ITG + ++L+ IF FCIGK Sbjct: 412 TGLSGDLISEDLRLCLEQLAEITGGQITTNEVLENIFKHFCIGK 455 >gi|237736115|ref|ZP_04566596.1| thiophene and furan oxidation protein ThdF [Fusobacterium mortiferum ATCC 9817] gi|229421826|gb|EEO36873.1| thiophene and furan oxidation protein ThdF [Fusobacterium mortiferum ATCC 9817] Length = 456 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 152/459 (33%), Positives = 247/459 (53%), Gaps = 30/459 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK----KKKPFPRKASLRYFFGLDG-RI 60 +TI A+ST I I+R+SG F + + I K KK R S+ Y DG ++ Sbjct: 4 DTIAAISTPRGEGGIGIVRISGSDAFTILKKIFKPKSGKKIEELRNFSINYGHIYDGEQL 63 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+ ++ + +P ++T E+ E + HGG + +LE + K R A GEF+RRAF N Sbjct: 64 IDEVMVSIMKAPHTYTKENIVEINCHGGFVITEKLLETVLKY-GARHAEIGEFTRRAFLN 122 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G+IDL +AE++ D+I +TE LS+ + G+L + + + I LD+ E Sbjct: 123 GRIDLTQAEAIIDIIHGKTEKSVSLSLNQLRGDLKEQIEHLKKLILDVAAHINVVLDYPE 182 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E + + + ++ ++ + + I G++I+ G K I+G N GKSSL N++ Sbjct: 183 E-GIDDPLPENLVGNLQEVVDTTDRLIKSYDKGKMIKEGIKTAIVGKPNVGKSSLLNSVL 241 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 +++ AIVT IPGTTRDV+ ++L+G + + DTAGIR+TDDIVE G++++ +ENAD Sbjct: 242 REERAIVTHIPGTTRDVIEEVVNLKGIPLILVDTAGIRKTDDIVENIGVEKSKKMIENAD 301 Query: 301 LILLL---------------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL-IS 344 LIL + + INS+K I ID K DL S T+ + + IS Sbjct: 302 LILFVIDGSRELEEEDIKIHESINSEKVIGILNKIDM---ERKVDL-SKLTKIKNWIEIS 357 Query: 345 SFTGEGLEELINKI-KSILSNKFKKLPFSIP-SHKRHLYHLSQTVRYLE-MASLNEKDCG 401 + G++E+ +KI I+ + I ++ RH L +T +Y+E + Sbjct: 358 AMKNIGIDEMEDKIYHHIVDGNVEDSSQKITITNVRHKSALEKTKQYVENIFDTIHAGLP 417 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++A +++ A SL ++TG + E LLD IFS FC+GK Sbjct: 418 MDLMAVDIKGALNSLSEVTGEISSEDLLDHIFSNFCVGK 456 >gi|227893842|ref|ZP_04011647.1| tRNA modification GTP-binding protein TrmE [Lactobacillus ultunensis DSM 16047] gi|227864331|gb|EEJ71752.1| tRNA modification GTP-binding protein TrmE [Lactobacillus ultunensis DSM 16047] Length = 461 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 150/467 (32%), Positives = 254/467 (54%), Gaps = 42/467 (8%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK----KKKPFPRKASLRYFFGLD-- 57 E +TI A+ST ISI+R+SG ++ + K K P ++ Y +D Sbjct: 7 EFDTIAAISTPIGEGGISIVRMSGEDAVKIANKVFKGADLSKVP---THTIHYGHIIDPH 63 Query: 58 -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 G+ +D+ ++ V +P++FT ED E + HGGI V N IL+ L R+A PGEF++R Sbjct: 64 TGKTIDESMVTVLRAPKTFTREDIVEINCHGGIVVTNHILQLLLS-NGARMAEPGEFTKR 122 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFI 172 AF NG+IDL +AES+ D++ ++T+ R++++ ++G ++ +L + +D L ++ Sbjct: 123 AFVNGRIDLTQAESVMDIVRAKTDKARQVAVHQLAGGLLHKIRALRQEILDTLANV---- 178 Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232 E ++D+ E D ++K++ + + I + + G+I+RNG I+G N GK Sbjct: 179 EVNIDYPEY-DADQVTAKQMSDTATDVIKKIDRLLKTAQEGKILRNGLATAIVGRPNVGK 237 Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292 SSL N L + D AIVTD+ GTTRD L + ++G +++ DTAGI T+D VEK G++R+ Sbjct: 238 SSLLNYLTQSDKAIVTDVAGTTRDTLEEYVSVKGVPLELIDTAGIHHTEDKVEKIGVERS 297 Query: 293 FLEVENADLILLLKEINS------KKEISFPKNIDFIFIGTKSDLYSTYTEEY------- 339 +E ADL+LLL + + K I K+ I I KSDL T + Sbjct: 298 KKALERADLVLLLIDASQDLTAEDKALIEETKSKKRIIILNKSDLGQKITVDQMKKLTGS 357 Query: 340 DHLISSFTGE----GLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE-MA 393 D + +S E LEE+INK+ + + N ++ + +++R L++ + L+ + Sbjct: 358 DVISTSILQEKNLDDLEEMINKLFFAGIENSNDQI---MVTNQRQASLLTKAKKELQDVV 414 Query: 394 SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + +DI + A +LG+ITG ++L+ +FS+FC+GK Sbjct: 415 QAVDNGIPVDIAQIDFTGAWDTLGEITGESAPDELITQLFSQFCLGK 461 >gi|150392473|ref|YP_001322522.1| tRNA modification GTPase TrmE [Alkaliphilus metalliredigens QYMF] gi|166988167|sp|A6TXE5|MNME_ALKMQ RecName: Full=tRNA modification GTPase mnmE gi|149952335|gb|ABR50863.1| tRNA modification GTPase TrmE [Alkaliphilus metalliredigens QYMF] Length = 461 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 148/466 (31%), Positives = 248/466 (53%), Gaps = 40/466 (8%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPF----PRKASLRYFFGLD-G 58 +TI A++T + I I+R+SG + + F K+ K PR+ + + + Sbjct: 5 DTIAAIATAHGEAGIGIVRISGEKALHIIDQVFQSKQGKKLKDISPRRITYGHIIDTERN 64 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 +D+ L+ P ++T ED E + HGG+ V ILE + + R A+ GEF++RAF Sbjct: 65 ERIDEVLVSYMKGPHTYTTEDVVEINCHGGMIPVKRILELILR-KGARAADAGEFTKRAF 123 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG+IDL +AE++ DL+S++T+M +++ + G LS + D+L + + IE +DF Sbjct: 124 LNGRIDLAQAEAVMDLVSAKTDMGFDVALNQLEGSLSKRVKKVKDELLDMLAHIEVSIDF 183 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 S+E DV + +L + ++ I + G+I+R G VI+G N GKSSL NA Sbjct: 184 SDE-DVDEVTLDLLLKQSMEIEKKIKVLLETADTGKILREGLNTVIVGKPNVGKSSLLNA 242 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L K+ AIVT++PGTTRD + ++ G + + DTAGIRET+DIVEK G++R+ Sbjct: 243 LLKESRAIVTEVPGTTRDAIEEHFNIRGIPLNLIDTAGIRETEDIVEKIGVERSKAFFNK 302 Query: 299 ADLILLLKEINSKKEISFPKNIDF---------IFIGTKSDLYSTYTEEYDHLISSFTGE 349 ADLI+L+ +++ +E++ P+++ + + K+DL S +YD +I GE Sbjct: 303 ADLIILM--LDASRELT-PEDLQIMELVKSKKALILVNKTDLTSQI--DYDRII-EIVGE 356 Query: 350 GLEELINKIKS-------------ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MAS 394 I+ I+ + + + + ++ RH L + + L + + Sbjct: 357 KKVIKISLIEESGLEEVEEALVEIVYKGETRAKDSLLVTNVRHKNALERALESLTDGVQA 416 Query: 395 LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + +K LD + +++ A +LG+ITG E LLD IF FCIGK Sbjct: 417 IKQK-MPLDFVEVDVKNAWDALGEITGDTVGEDLLDHIFQNFCIGK 461 >gi|183219714|ref|YP_001837710.1| tRNA modification GTPase TrmE [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189909849|ref|YP_001961404.1| tRNA modification GTPase TrmE [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|205415774|sp|B0SAE4|MNME_LEPBA RecName: Full=tRNA modification GTPase mnmE gi|205415775|sp|B0SJ24|MNME_LEPBP RecName: Full=tRNA modification GTPase mnmE gi|167774525|gb|ABZ92826.1| tRNA modification GTPase TrmE [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167778136|gb|ABZ96434.1| GTPase involved in tRNA modification and in thiophene and furan oxidation [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 461 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 147/470 (31%), Positives = 241/470 (51%), Gaps = 46/470 (9%) Query: 6 ETIFAVSTGALPSAISIIRLSG----PSCFQVCEFICKKKKPFP-------RKASLRYFF 54 +TI A+ST P AI I+R+SG P V E K +KP +++++ F Sbjct: 3 DTIAALSTAQGPGAIGILRVSGSLVMPIALAVLE---KNQKPLTETFLQNQKRSAIFCDF 59 Query: 55 GLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114 +G+ LD+ + FP+P S+TGED AEFH+HG ++ L L + R A GEF+ Sbjct: 60 VENGKPLDQIVFFYFPAPNSYTGEDLAEFHLHGNPLLLKRALHVLFE-KGARPAQKGEFT 118 Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174 +RA+ NGKI+L AE+++ LI + ++ + L+ + + GE++ L + L +++ EA Sbjct: 119 KRAYMNGKINLSGAEAISRLIEARSKYELELAQKNVFGEITKLSSKIRSDLISLKAECEA 178 Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234 ++DFS E D+ S +E N ++ LKN S I + E +V+ G N GKSS Sbjct: 179 EIDFSTE-DLTFESLEERKNRMVALKNLCSKLIKDSERAESYILQSTVVLYGEPNTGKSS 237 Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294 L N L KD +I++D+PGTTRD + +L L+G +++ DTAGIR+T D +E+ GI+R+ Sbjct: 238 LMNLLIGKDRSIISDVPGTTRDYIAEELSLDGIPIRLVDTAGIRDTTDNIEQMGIERSKR 297 Query: 295 EVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYST--YTEEYDHLISSFTGEGLE 352 E ++A++ L L + S P + K L+ + + D S+ E + Sbjct: 298 EADSANVKLFL------IDTSLPFEKQSFLLKHKDRLFGSLIVANKIDSKHPSWHTESIH 351 Query: 353 ELINKIKSILSNKFKKLPFSIPS---------------------HKRHLYHLSQTVRYL- 390 ++ + + +S K IP R YH+ + L Sbjct: 352 DIQEEFQLTISEISCKTKQGIPELLELLKSKLTSKDDTEDLVLLEDRQRYHIQKIESCLS 411 Query: 391 EMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E L E + +I + + +A +G++ G V+ E++L IFSKFC+GK Sbjct: 412 EAIQLMENNAPAEIYIQEINVALHEIGQVNGVVENEEILGRIFSKFCVGK 461 >gi|255535209|ref|YP_003095580.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Flavobacteriaceae bacterium 3519-10] gi|255341405|gb|ACU07518.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Flavobacteriaceae bacterium 3519-10] Length = 462 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 157/469 (33%), Positives = 251/469 (53%), Gaps = 36/469 (7%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLDG- 58 MN++ TI A++T AI IIR+SG ++ I + K ++ Y F DG Sbjct: 1 MNND--TICALATANGIGAIGIIRVSGSDSIRIVNLIFEGKDLEKANSHTVHYGFIKDGD 58 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 +D+ ++ VF +P++FT EDS E HG + ILE L K R+A GEF+ RAF Sbjct: 59 ETVDEVMVTVFMAPKTFTTEDSVEISFHGSPFIGKKILEVLIK-NGARMARAGEFTMRAF 117 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG+IDL +AES+ADLI+SE E R++++ + G +++ L + S IE +LDF Sbjct: 118 MNGRIDLSQAESIADLIASENEASRKVALNQLKGGITNEISILRTDLLNFVSLIELELDF 177 Query: 179 SEEEDVQNFSSKEVLNDILF-LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 +EE DV+ F+ ++ L +L ++ + S I + G I+NG + I+G NAGKS+L N Sbjct: 178 AEE-DVE-FADRDALVQLLRKIEEKLISLIDSFEYGNAIKNGVGVAIIGKPNAGKSTLLN 235 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 AL K++ AIV+DI GTTRD + L ++G ++ DTAG+RET D +EK G+ + +V Sbjct: 236 ALLKEERAIVSDIAGTTRDTIEEMLHIKGNAFRLIDTAGLRETSDEIEKIGVAKAREKVA 295 Query: 298 NADLILLL---KEINSKKEISFPK-----NIDFIFIGTKSDLYSTYTEEYD--------- 340 A++++ L E + +++ + ++ I + TK+DL + + + Sbjct: 296 TAEILVYLIDSTETDISEDVELIRDLARYDLSLIVLLTKTDLPKSALQSEEIRNSLPVLD 355 Query: 341 ----HLI--SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH---LYHLSQTVRYLE 391 HLI S+ L+EL + + + +++RH L H Q V + Sbjct: 356 FKDFHLIPVSAKQNSNLDELKEAFTGYVDDLNSGENNVVITNQRHFEALQHSLQAVHAVH 415 Query: 392 MASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A +++A LR A LG+I+G +++L IFSKFCIGK Sbjct: 416 EAV--SSRITTELLAYELRNALEYLGEISGEFTNDEVLGNIFSKFCIGK 462 >gi|194476819|ref|YP_002048998.1| tRNA modification GTPase [Paulinella chromatophora] gi|171191826|gb|ACB42788.1| tRNA modification GTPase [Paulinella chromatophora] Length = 406 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 127/404 (31%), Positives = 222/404 (54%), Gaps = 26/404 (6%) Query: 56 LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 ++G +D+ LL++ +P SFT ED EF HGG+ V +LE L R A PGEF++ Sbjct: 10 INGERIDEALLLIMKAPRSFTAEDVIEFQCHGGLVCVQRVLE-LVISEGARRALPGEFTQ 68 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RA +G++D+ AE++++LI + + +L+M G+ G + + ++L + IEA Sbjct: 69 RAVLHGRLDITRAEAISELIGARSRRASQLAMVGLGGGVQKSILGFRERLLDQLAEIEAR 128 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +DF EE++ + ++ + ++ + G+ I++ G +I ++G N GKSSL Sbjct: 129 VDF--EENILPVDECAIKREVQSIVQELIQLVVDGRCSAIVQRGLRIALVGRPNVGKSSL 186 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N L++++ AIVTDIPGTTRD++ ++ L G + + DTAGI+ T+D VEK GI+R+ Sbjct: 187 LNRLSRRERAIVTDIPGTTRDLIETEIILNGVPITLLDTAGIQVTEDKVEKVGIERSREA 246 Query: 296 VENADLILLLKEINSKKEIS-------FPKNIDFIFIGTKSDLYSTYTEEYDHL------ 342 + +AD I+L+ ++ ++ P ++ + +G K+D YS + L Sbjct: 247 IASADAIVLVFDLVEGWTLADAILLKEIPSDVTLLIVGNKADRYSNKSHSPIQLSDPLWA 306 Query: 343 --ISSFTGEG----LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396 +S+ TGEG L EL+N+ + + +++ ++ + + L + ++ + + Sbjct: 307 MPVSAMTGEGEASMLTELLNRCG---AGEIQEINLALNARQCDLASSAASILEQGLQTF- 362 Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E +D +LR A LG+ITG E LD IFS+FCIGK Sbjct: 363 EDGLPIDFFTIDLRQAIKFLGQITGDDISESTLDRIFSRFCIGK 406 >gi|188994926|ref|YP_001929178.1| tRNA modification GTPase TrmE [Porphyromonas gingivalis ATCC 33277] gi|188594606|dbj|BAG33581.1| tRNA modification GTPase [Porphyromonas gingivalis ATCC 33277] Length = 518 Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 151/469 (32%), Positives = 243/469 (51%), Gaps = 36/469 (7%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKK-----KPFPRKASLRYFFGLD 57 K+TI AV+T I++IR+SG + F++ F+ + K + PR A D Sbjct: 53 KDTICAVATAPGVGGIAVIRVSGANAFRLVSPLFLHRGKAIDLSEAKPRTALYGEIMEAD 112 Query: 58 GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 ++D+ +L F +P SFT E + E HG I + ILE L RLA PGEF+RRA Sbjct: 113 -ELIDEVVLTCFHAPHSFTAEHTVEIACHGSIYIRRRILEALINQ-GCRLAQPGEFTRRA 170 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 + NG++DL AE++AD+I+SE++ Q +++M+ + G S ++L + +E +LD Sbjct: 171 YLNGRMDLSSAEAVADIIASESKAQHQMAMKQLRGGYSEELNALREELLRLTGLMELELD 230 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 F EE DV+ E+L ++ + I +LG ++ G + I+G +N GKS+L N Sbjct: 231 FPEE-DVEFADRTELLALCDQIELKLKKLIDSYRLGNAVKRGIPVAIVGTTNVGKSTLLN 289 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 L ++ AIV+DI GTTRD + + + GYL + DTAG+RET+D +E GI+R+ +++ Sbjct: 290 TLLGEERAIVSDIHGTTRDTIEDTMHIGGYLFRFVDTAGLRETEDTIESLGIERSRSKIK 349 Query: 298 NADLILLL---KEINSKKEISFPKNI-------DFIFIGTKSDLYSTY------------ 335 AD+IL + I+ ++ + K+I I + KS+ + Sbjct: 350 EADIILAVVDGTRISEANQLDYIKSIWDEREERTVILLVNKSESLAEADRIGLSEALQTK 409 Query: 336 --TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EM 392 T IS+ G G++EL ++ I+ I S+ RH L + L M Sbjct: 410 LSTPTRPIFISAREGRGIDELKGELTQIMETSGANEADLIVSNARHHQLLREAFDALRRM 469 Query: 393 ASLNEKDCGLDIIAENLRLASVSLGKITGC-VDVEQLLDIIFSKFCIGK 440 S + D++ +LR A S+G+ITG + + L IF+ FCIGK Sbjct: 470 RSGFDMGLSTDLLTLDLRHAITSIGEITGREITSDDTLHYIFAHFCIGK 518 >gi|291526551|emb|CBK92138.1| tRNA modification GTPase trmE [Eubacterium rectale DSM 17629] Length = 458 Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 154/462 (33%), Positives = 249/462 (53%), Gaps = 30/462 (6%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-----RKASLRYFFGLDG 58 + +TI A++T PS I IIR+SG V + I K K + ++ Y F DG Sbjct: 2 QNDTIAAIATAMSPSGIGIIRISGDDALSVIDRIYKSKNNKKKISACQSHTIHYGFIYDG 61 Query: 59 -RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 +D+ ++++ +P ++T ED+ E HGG+ V+ +LE + K R A PGEF++RA Sbjct: 62 DEKIDEVMVLLMKAPNTYTREDTVEIDCHGGVYVMKRVLEAVIK-NGARPAEPGEFTKRA 120 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NG+IDL +AES+ D+I+S+ + + S+ + G + Q ++L H +FIE+ LD Sbjct: 121 FLNGRIDLSQAESVIDVINSKNDFALKSSLSQLGGAVLGSIRQIREQLLHEIAFIESALD 180 Query: 178 FSEEEDVQNFSSK-EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 E + + K + D +++ I + G I++ G VI+G NAGKSSL Sbjct: 181 DPEHISLDGYPQKLRAIVDNEYVE--IDGLLKTSDNGRILKEGINTVIIGKPNAGKSSLL 238 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N L + AIVTDI GTTRDVL +++ G + + DTAGIR T+D+VEK G+K+ Sbjct: 239 NVLVGSERAIVTDIAGTTRDVLEEQINIGGITLNLVDTAGIRSTEDVVEKIGVKKAMEHA 298 Query: 297 ENADLIL------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEE-----YDHLISS 345 + ADLI+ ++ + N I+F K+ + + KSDL S + + D + S Sbjct: 299 DEADLIIYVVDSSVVLDDNDYDIINFIKDKKAVILLNKSDLASKVSADDIKKLVDKTVIS 358 Query: 346 FTGE---GLEELINKIKSILSN---KFK-KLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398 + + G++ L + IK + + F ++ + HK+ L ++++ L M S+++ Sbjct: 359 VSAKESSGIDGLSDTIKEMFFDGQVSFNDEIYITNIRHKKLLSDAKESLK-LVMNSIDD- 416 Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D D + +L A SLG I G + L+D IFSKFC+GK Sbjct: 417 DMPEDFYSIDLMSAYESLGLIIGESVEDDLMDEIFSKFCMGK 458 >gi|242079095|ref|XP_002444316.1| hypothetical protein SORBIDRAFT_07g020060 [Sorghum bicolor] gi|241940666|gb|EES13811.1| hypothetical protein SORBIDRAFT_07g020060 [Sorghum bicolor] Length = 548 Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 150/481 (31%), Positives = 244/481 (50%), Gaps = 60/481 (12%) Query: 7 TIFAVST--GALPSAISIIRLSGPSCFQVCEFICKK------KKPF-PRKASLRYFFGLD 57 TI A+ T G P+A+ I+RLSGP V + + + P+ PR + Y LD Sbjct: 81 TIAAIVTSLGGGPAAVGIVRLSGPDAVAVADRVFRPAGARRASAPWQPRSHFVEYGLALD 140 Query: 58 --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 G ++D+ L++ +P S+T ED E HG + +L + RLA+PGEF+ Sbjct: 141 ADGSVIDEVLVVPMLAPRSYTREDVVELQCHGNDLCLRRVLRACLEA-GARLADPGEFTL 199 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG++DL +AE+++ LIS+++ ++ G+ G S+L + + + IEA Sbjct: 200 RAFLNGRLDLAQAENVSRLISAKSAAVADSALAGIQGGFSTLVRSLRSRCIELLTEIEAR 259 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 LDF E+++ +++ I ++ ++ + +++++G +I I+G N GKSSL Sbjct: 260 LDF--EDEMPPLDLVMLVSKINCMRQEVQDALDTSNYDKLLQSGLQIAIIGRPNVGKSSL 317 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 NA +K + AIVT+I GTTRDV+ ++ + G V + DTAGIRETDD+VEK G+KR+ Sbjct: 318 LNAWSKSERAIVTEIAGTTRDVVEANVSIHGVPVTLLDTAGIRETDDVVEKIGVKRSEAA 377 Query: 296 VENADLILL--------------LKE---INSKKEISFPKNIDFIFIGTKSDLYS-TYTE 337 ADLI++ L E IN K S + + + K D E Sbjct: 378 AMGADLIVMAISAVDGWTDDDTKLMEHVLINRKSSGS---AVPMVLVINKVDCAPFVPGE 434 Query: 338 EYDHLISSF---------TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL----YHLS 384 +++ F TG+G+ +L + + + + +PS R Sbjct: 435 QFEQFSGLFIKHVQTCAVTGKGISDLESAVIEVRGIEH------VPSEGRRWTVNQRQFE 488 Query: 385 QTVRYLEM-----ASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIG 439 Q +R E +S+NE+ +D +LR A+++L I+G E++L IFSKFCIG Sbjct: 489 QLLRTKEAFLRLESSINEQ-LPMDFWTVDLREAALALATISGEDISEEVLSSIFSKFCIG 547 Query: 440 K 440 K Sbjct: 548 K 548 >gi|239993743|ref|ZP_04714267.1| tRNA modification GTPase [Alteromonas macleodii ATCC 27126] Length = 367 Score = 197 bits (500), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 130/365 (35%), Positives = 196/365 (53%), Gaps = 36/365 (9%) Query: 104 NLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWID 163 + RLANPGEFS +AF N K+DL +AE++ADLI + ++ + ++ + GE S+ D Sbjct: 11 DARLANPGEFSEQAFLNDKLDLAQAEAIADLIDASSKQAAKSALRSLQGEFSTQIQTLSD 70 Query: 164 KLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIV 223 ++ H+R ++EA +DF EEE + S +V D+ + ++ Q K G ++R G ++V Sbjct: 71 QIVHLRMYVEAAIDFPEEE-IDFLSDGKVSGDLSAIMQSLTKVREQAKQGTLLREGMQVV 129 Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 I G NAGKSSL NALA +D AIVTDI GTTRDVL + ++G V I DTAG+RE+ D Sbjct: 130 IAGRPNAGKSSLLNALAGRDSAIVTDIAGTTRDVLKEHIHIDGMPVHIIDTAGLRESPDK 189 Query: 284 VEKEGIKRTFLEVENADLILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDL- 331 VE+ GI+R + + AD +L + + + I P+ I + K+DL Sbjct: 190 VEQIGIERAWQAINEADHVLFVVDSTATAVIDPYEIWPEFMARLPQGIPVTVVRNKADLS 249 Query: 332 -----YSTYTEEYDHL----ISSFTGEGLEELINKIKSILSNKFKKLPFSIPS------H 376 ST E + +S+ G G ++ +K+ L+ K + F + Sbjct: 250 TLDIGQSTVATEQGDISVINLSAKEGSG----VDTLKAHLA---KTMGFDTTTEGQFIAR 302 Query: 377 KRHLYHLSQTVRYLEMASLNEKDC-GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSK 435 +RH+ L Q Y+ D +++AE LRLA +L +ITG + LL IFS Sbjct: 303 RRHIDALDQAYSYVSTGEQQLHDAMAGELLAEELRLAHQALCEITGEFTSDDLLGKIFSS 362 Query: 436 FCIGK 440 FCIGK Sbjct: 363 FCIGK 367 >gi|194467398|ref|ZP_03073385.1| tRNA modification GTPase TrmE [Lactobacillus reuteri 100-23] gi|194454434|gb|EDX43331.1| tRNA modification GTPase TrmE [Lactobacillus reuteri 100-23] Length = 462 Score = 197 bits (500), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 147/465 (31%), Positives = 251/465 (53%), Gaps = 31/465 (6%) Query: 2 NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD-- 57 N E +TI A+ST ISIIR+SG +V + I K K + A+ +G +D Sbjct: 3 NSENDTIAAISTPVGEGGISIIRISGDDAVKVAQRIYKGKN-LAKVATHTINYGHIVDPD 61 Query: 58 -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 + +D+ ++ V +P ++T ED E + HGG+ N IL+ L R+A PGEF++R Sbjct: 62 TDQEVDEVMVSVMRAPHTYTREDVIEINCHGGLLATNRILQ-LVLSFGARMAEPGEFTKR 120 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NG++DL ++E++ DLI ++T+ ++++ + G+LS L + + + +E ++ Sbjct: 121 AFLNGRLDLSQSEAVMDLIRAKTDKSMKVALNQLDGDLSRLIRNLRQDILDVLAQVEVNI 180 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D+ E + V+ ++K + ++ I + K G+++R+G I+G N GKSSL Sbjct: 181 DYPEYDAVEEMTTKLLKEKAEDIQQRIQGLLKTAKQGKVLRDGLATAIIGQPNVGKSSLL 240 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N+L +D AIVT++ GTTRDV+ +++ G +K+ DTAGIR+T+D VEK G++R+ + Sbjct: 241 NSLLHEDKAIVTNVAGTTRDVIEEYVNVNGVPLKLIDTAGIRDTNDQVEKIGVERSRKAL 300 Query: 297 ENADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDL-YSTYTEEYDHL----- 342 ADL+LLL I+S E++ K+ I I K+DL E L Sbjct: 301 GAADLVLLL--IDSSNELTEEDYQLLEATKDKQRIIILNKTDLPRKVDLAELKSLAGKSA 358 Query: 343 ---ISSFTGEGLEELINKIKSILSNKF--KKLPFSIPSHKRHLYHLSQTVRYLE--MASL 395 S EG+++L +I + N+ + ++ RH+ L Q L + + Sbjct: 359 VIETSIVNHEGMDQLGEQIGYMFFNEGIESNQNNVMVTNARHIGLLHQANDALSDVLKGI 418 Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 N+ +D++ ++ LG+ITG ++LLD +FS+FC+GK Sbjct: 419 NDG-MPVDLVQIDMTRCWELLGEITGDSYQDELLDQLFSQFCLGK 462 >gi|46579492|ref|YP_010300.1| tRNA modification GTPase TrmE [Desulfovibrio vulgaris str. Hildenborough] gi|81830466|sp|Q72D51|MNME_DESVH RecName: Full=tRNA modification GTPase mnmE gi|46448906|gb|AAS95559.1| tRNA modification GTPase TrmE [Desulfovibrio vulgaris str. Hildenborough] gi|311233307|gb|ADP86161.1| tRNA modification GTPase TrmE [Desulfovibrio vulgaris RCH1] Length = 457 Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 132/398 (33%), Positives = 209/398 (52%), Gaps = 22/398 (5%) Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD L + P P +FTGED +E H HGG V+ +LE + R A GEF+RRAF N Sbjct: 64 LDDVLAVHMPGPRTFTGEDVSEIHCHGGSGVLAAVLEACVRH-GARYAERGEFTRRAFLN 122 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G++DL +AE++A++I++ + RL+ + G L G +L +R + +DF E Sbjct: 123 GRMDLTQAEAVAEMIAAPSREGMRLAQAKLDGLLGQRVGALRARLDALRMQLCVAVDFPE 182 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE V+ + + L +I ++ + + ++G +V+ G NAGKSSL NAL Sbjct: 183 EE-VECLAPEAFLAEIEAVRQGVVELSAGYARTRCWQDGALVVLAGQVNAGKSSLMNALL 241 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 + AIVTD+PGTTRD + L+L G ++++DTAG+RET DIVE+EG++ + V AD Sbjct: 242 GRRRAIVTDLPGTTRDFIEEPLNLSGLAIRLADTAGLRETGDIVEQEGVRMSRDLVAQAD 301 Query: 301 LILLLKEIN---SKKEISF-----PKNIDFIFIGTKSDLY------STYTEEYDHLISSF 346 L+LL+ + E+ P+ + +F K+DL ST +++ Sbjct: 302 LVLLVTDATQGLQGPELELLRHAGPERVLVVF--NKTDLLEGRILPSTPEGCRSVHVAAA 359 Query: 347 TGEGLEELINKIK-SILSNKFKKLPFS--IPSHKRHLYHLSQTVRYL-EMASLNEKDCGL 402 +G+G+E L+ I+ ++L+ P + + + R L + L E+A Sbjct: 360 SGDGVESLVTAIRAAVLAATGAGEPEAGELAPNMRQAAALDKAATILDELAGDIRAHVPY 419 Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D+ L A +L +TG E +LD IF+ FCIGK Sbjct: 420 DLCGVRLDGACAALMDVTGQSTPEAILDAIFASFCIGK 457 >gi|290953967|ref|ZP_06558588.1| tRNA modification GTPase TrmE [Francisella tularensis subsp. holarctica URFT1] gi|295312644|ref|ZP_06803394.1| tRNA modification GTPase TrmE [Francisella tularensis subsp. holarctica URFT1] Length = 379 Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 127/349 (36%), Positives = 200/349 (57%), Gaps = 30/349 (8%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILD 62 + K+TI A++T I IIR+SG ++ E + KK+ PR A+ + D I+D Sbjct: 2 YTKDTIVAIATPQGNGGIGIIRISGIDALEIAEKLTKKQLK-PRYATFCNVYN-DNEIID 59 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 G++I F +P S+TGED E HG ++N I++ A R+A GEF+ RAF N K Sbjct: 60 HGIVIFFKAPLSYTGEDVVEIQAHGNPFILNLIIKA-ALNCGARMAKAGEFTERAFLNNK 118 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 +DL +AE++AD+I++ +E+ + + + + G+ S ++KL ++R ++EA +DF EEE Sbjct: 119 LDLAQAEAVADIINASSEIAAKSAAKSLQGDFSKEINNLLEKLIYLRMYVEASIDFPEEE 178 Query: 183 -----DVQNFSS-KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D + SS +E+ IL +KN K G I+ G ++++G NAGKSSL Sbjct: 179 INFLEDQKIHSSLEEIYKVILAIKNSC-------KQGVILAEGITLILVGKPNAGKSSLL 231 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 NALA K+ AIVT I GTTRD++ + + G + I DTAG+R +DDI+E EGIKR ++ Sbjct: 232 NALAGKESAIVTSIAGTTRDIVKEHIQINGVPMHIIDTAGLRNSDDIIESEGIKRAIKKI 291 Query: 297 ENADLILLLKEINSKKEISF--------------PKNIDFIFIGTKSDL 331 + AD +L + + + ++ F PK+ID ++ K DL Sbjct: 292 QEADQVLFVTDDYTNSQVKFSDIKEIIPEFYDQIPKDIDITYVHNKIDL 340 >gi|46577356|sp|Q7MVZ2|MNME_PORGI RecName: Full=tRNA modification GTPase mnmE Length = 474 Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 151/474 (31%), Positives = 239/474 (50%), Gaps = 46/474 (9%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKK-----PFPRKASLRYFFGLD 57 K+TI AV+T I++IR+SG F++ F+ + K PR A D Sbjct: 9 KDTICAVATAPGVGGIAVIRVSGADAFRLVSPLFLYRGKAIDLSGAKPRTALYGEIMEAD 68 Query: 58 GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 ++D+ +L F P SFT E + E HG I + ILE L RLA PGEF+RRA Sbjct: 69 -ELIDEVILTCFHGPHSFTAEHTVEIACHGSIYIRRRILEALINQ-GCRLAQPGEFTRRA 126 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 + NG++DL AE++AD+I+SE++ Q +++M+ + G S ++L + +E +LD Sbjct: 127 YLNGRMDLSSAEAVADIIASESKAQHQMAMKQLRGGYSEELNALREELLRLTGLMELELD 186 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 F EE DV+ E+L ++ + I +LG ++ G + I+G +N GKS+L N Sbjct: 187 FPEE-DVEFADRTELLALCDQIELKLKKLIDSYRLGNAVKRGIPVAIVGTTNVGKSTLLN 245 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 L ++ AIV+DI GTTRD + + + GYL + DTAG+RET+D +E GI+R+ +++ Sbjct: 246 TLLGEERAIVSDIHGTTRDTIEDTMHIGGYLFRFVDTAGLRETEDTIESLGIERSRSKIK 305 Query: 298 NADLILLL---KEINSKKEISFPKNI-------DFIFIGTKSDLYSTY------------ 335 AD+IL + I+ ++ + K+I I + KS+ + Sbjct: 306 EADIILAVVDGTRISEANQLDYIKSIWDEREERTLILLVNKSESLAEADRIGLSETLQTK 365 Query: 336 --TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA 393 T IS+ G G++EL ++ I+ I S+ RH L + L Sbjct: 366 LSTPTKPIFISAREGRGIDELKGELTQIMETSGANEADLIVSNARHHQLLREAFDALRRM 425 Query: 394 SLNEKDCGLDI------IAENLRLASVSLGKITGC-VDVEQLLDIIFSKFCIGK 440 L G D+ + +LR A S+G+ITG + + L IF+ FCIGK Sbjct: 426 RL-----GFDMGLSTDLLTLDLRHAITSIGEITGREITSDDTLHYIFAHFCIGK 474 >gi|291543431|emb|CBL16540.1| tRNA modification GTPase TrmE [Ruminococcus sp. 18P13] Length = 454 Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 148/465 (31%), Positives = 236/465 (50%), Gaps = 44/465 (9%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL----DGRI 60 TI A+ST I++IR+SGP V F KP A +G DG Sbjct: 3 TIAAISTPNAVGGIAVIRVSGPDALTVAARVFTPANGKPVSGMAGYTCAYGTVLDQDGNP 62 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D +L VF +P S+TGED+AE HGG+ + +L L A PGEF++RAF Sbjct: 63 VDDVVLTVFRAPHSYTGEDTAELSCHGGLFLSRQVLR-LCFAAGAEPAQPGEFTKRAFLA 121 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GK+ L +AES+ DLIS++ + Q R + G + D+L + S + A +D+ E Sbjct: 122 GKLSLTQAESVMDLISAQGDAQLRCARSLREGAVFRRIHSCTDQLVVLLSDLAAWVDYPE 181 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E D+ + + + L D+S+ S G I+R G VI+G N GKS+L N L+ Sbjct: 182 E-DIPSVEPDALDASLTALHADLSAIASTYDYGRILREGINTVIVGRPNVGKSTLMNRLS 240 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 + +IVTDI GTTRDV+ + L +++SDTAG+R+T D +E+ G++ + +E A+ Sbjct: 241 GFERSIVTDIAGTTRDVVEESVRLGDLTLRLSDTAGLRDTPDRIEQLGVEIAYRRLEEAE 300 Query: 301 LILLLKEINS------KKEISFPKNIDFIFIGTKSDLYSTYTEE-------YDHLISSFT 347 LIL + + + ++ IS + I KSD S+ T + Y IS+ T Sbjct: 301 LILAVFDSTAPLLPQDRELISRIGKRRAVAICNKSDAGSSLTPDELSAHFAYVIPISAKT 360 Query: 348 GEGLEELINKIKS------------ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL 395 GEG+E+L + + + +LSN+ +KL +R + H+S + + Sbjct: 361 GEGMEQLSSALHALFLSDAPDPQAGVLSNERQKLCV-----ERAMEHISAAIAAVRSGE- 414 Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LD + L A+ +L ++TG E +++ +F++FC+GK Sbjct: 415 -----PLDCVTVLLDDAANTLLELTGERATEAVVEQVFARFCVGK 454 >gi|156742840|ref|YP_001432969.1| tRNA modification GTPase TrmE [Roseiflexus castenholzii DSM 13941] gi|205415804|sp|A7NN19|MNME_ROSCS RecName: Full=tRNA modification GTPase mnmE gi|156234168|gb|ABU58951.1| tRNA modification GTPase TrmE [Roseiflexus castenholzii DSM 13941] Length = 464 Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 151/469 (32%), Positives = 237/469 (50%), Gaps = 43/469 (9%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-SLRYFFGLDGR--ILD 62 +TI A++T I I+R+SG + E I +P K +RY +DG +D Sbjct: 5 DTIAAIATPPGEGGIGIVRISGKDALSILERIFVPVRPGRWKPYRMRYGHVVDGAGVRVD 64 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 + L + P SFT ED+ E VHGG VV +L++ R ANPGEF+ RAF NG+ Sbjct: 65 EALAVFMRGPRSFTAEDTVEISVHGGPLVVERVLQQALAA-GARAANPGEFTMRAFLNGR 123 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFIEADLDF 178 IDL +AE+ D+I++ T L+ + G EL + ID L + + ++ D Sbjct: 124 IDLTQAEATLDIITARTTTALALAEAQLGGWLSHELRRIRALLIDPLAYCTALVDFPEDE 183 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E +DV+ + V + + ++ + G I R G + ++G NAGKSSL NA Sbjct: 184 VEPQDVETPLTAAV--------QALDTLVATAEQGIIYRQGARATLVGRPNAGKSSLLNA 235 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L + D AIVT IPGTTRD L +L G V ++DTAGI E+ D VE+ G++R+ V Sbjct: 236 LLRIDRAIVTPIPGTTRDTLEETANLGGVPVVLTDTAGIVESVDPVERLGVERSRQAVAQ 295 Query: 299 ADLILLLKE-----INSKKEI-SFPKNIDFIFIGTKSDLY--STYTEE--------YDHL 342 ADL+LL+ E ++ +EI + ++ + I K DL + +E Y++L Sbjct: 296 ADLLLLVVEGVSQPVDDDREIVALTRDKRTVLIVNKIDLIDGADAVQECMKFLKCAYENL 355 Query: 343 ----------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM 392 +S+ TG+GL+ L + +L + ++ RH L++ + Sbjct: 356 RGVPFDATIAVSALTGQGLDMLGATVARLLLGDSSPADGRLVTNVRHRDALARAATHARD 415 Query: 393 ASLN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A + + D++A +L A ++G++TG + LL IFS+FCIGK Sbjct: 416 ALDSFRRGVSPDLLAVDLTAAINAIGEVTGEAVGDDLLHAIFSRFCIGK 464 >gi|14195296|sp|Q9RL97|MNME_STRAG RecName: Full=tRNA modification GTPase mnmE gi|6448626|emb|CAB61255.1| thiophene degradation protein F [Streptococcus agalactiae] Length = 462 Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 150/468 (32%), Positives = 256/468 (54%), Gaps = 36/468 (7%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK----KKKPFPRKASLRYFFGL 56 + E +TI A+ST AI I+R+SG ++ I + K + +L Y + Sbjct: 3 ITKEFDTIAAISTPLGEGAIGIVRISGTDALKIASKIYRGLRGKDLSAIQSHTLNYGHIV 62 Query: 57 D---GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEE-LAKMPNLRLANPGE 112 D ILD+ +L V +P++FT ED E + HGGIAV N IL+ LA M + A PGE Sbjct: 63 DPDKNEILDEVMLGVMLAPKTFTREDVIEINTHGGIAVTNEILQLILATMDHN--AEPGE 120 Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQR-RLSMEGMSGELSSLYGQWIDKLTHIRSF 171 F++RAF NG++DL +AE++ DLI ++T Q +S++ + G L +L ++ + + Sbjct: 121 FTKRAFLNGRVDLTQAEAVMDLIRAKTIKQWIYVSLKQLDGSLKTLINNTRQEILNTLAQ 180 Query: 172 IEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAG 231 +E ++D+ E +DV+ ++ + + + + + + G+I+R G +G N G Sbjct: 181 VEVNIDYPEYDDVEEMTTTLMREKTQEFQALMENLLRTARRGKILREGLSTAKIGRPNVG 240 Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR 291 KS L N L +++ AIVTDI GTTRDV+ ++++G +K+ DTAGIR+TDDIVEK G++R Sbjct: 241 KSQLLNNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLVDTAGIRDTDDIVEKIGVER 300 Query: 292 TFLEVENADLILLLKEINSKKEISFP--------KNIDFIFIGTKSDLYSTYTEEYDHL- 342 + +E ADL+LL+ +NS + ++ K + I + K+DL E + L Sbjct: 301 SKKALEEADLVLLV--LNSSEPLTLQDRSLLELSKESNRIVLLNKTDLPQKI--EVNELP 356 Query: 343 -----ISSFTGEGLEELINKIKSILSNKFKKLPFSIP--SHKRHLYHLSQTVRYLEMASL 395 IS E ++++ +I I + + S+ RH+ + + V L+ ++ Sbjct: 357 ENVIPISVLENENIDKIEERINDIFFDNAGMVEHDATYLSNARHISLIEKAVDSLK--AV 414 Query: 396 NEK-DCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 NE + G+ D++ ++ LG+ITG ++L+ +FS+FC+GK Sbjct: 415 NEGLELGMPVDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK 462 >gi|326335516|ref|ZP_08201703.1| thiophene and furan oxidation protein ThdF [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692282|gb|EGD34234.1| thiophene and furan oxidation protein ThdF [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 475 Score = 196 bits (499), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 160/483 (33%), Positives = 257/483 (53%), Gaps = 51/483 (10%) Query: 1 MNHEK-----ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK--KKKPFPRKASLRYF 53 MNHEK +TI A++T AI+IIRLSG + + + K K S Sbjct: 1 MNHEKIPYTNDTIVALATATGVGAIAIIRLSGKEAIALADKVFKTLSGKTLSEAPSHTVH 60 Query: 54 FGL---DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANP 110 G + +++D+ L +F +S+TGE EF HG ++ +++ L RLA Sbjct: 61 LGTIKNENQVIDECLATIFKGKKSYTGEPVVEFSCHGSPYIIQEVIK-LCLTNGARLAQA 119 Query: 111 GEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRS 170 GEF++RAF N K+ L +AE++ADLI+S+++ +++++ M G +S +L + S Sbjct: 120 GEFTKRAFLNRKLALNQAEAVADLIASDSKASHQVALQQMRGGFTSKIEGLRQELLNFAS 179 Query: 171 FIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQG-KLGEIIRNGYKIVILGHSN 229 IE +LDFSEE DV F+ +E L +L I + Q G I+NG + I+G N Sbjct: 180 LIELELDFSEE-DVA-FADREQLEQLLQRIRTILQRLVQSFSAGNAIKNGIPVAIVGKPN 237 Query: 230 AGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGI 289 AGKS+L N L ++ AIV+DI GTTRD + L ++G + DTAGIR+T D +E G+ Sbjct: 238 AGKSTLLNTLLNEERAIVSDIAGTTRDTIEETLHIDGITFRFIDTAGIRDTQDKIEAIGV 297 Query: 290 KRTFLEVENADLILLL--KEINSKKEI------SFPKNIDFIFIGTKSDL----YSTYTE 337 ++ +++ A ++L L ++ N+ E+ ++ K + + + K+D S + E Sbjct: 298 EKAKEKIKKAQIVLYLYNEKENTTDEVVQFVQENYRKGLKILLLHNKTDSEYIGLSDFDE 357 Query: 338 EYDHLISSFT---GEG-----LEELIN--KIKSILSNKFKKLP----FSIPSHKRHLYHL 383 E + ++S G G +E IN +K ILS+ K+L +I ++ RHL L Sbjct: 358 EIEEKLNSKERKYGYGQLRISAKEKINIEALKEILSSYAKELTTTESATIITNIRHLEAL 417 Query: 384 SQTVRYLEMASLNEKDCGL------DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFC 437 QT + +L+ + GL D++A ++R LG ITG V +++L IFS+FC Sbjct: 418 QQT-----LVALDRVEEGLATQLSGDLLAIDIREMLYHLGSITGAVSNDEVLGNIFSRFC 472 Query: 438 IGK 440 IGK Sbjct: 473 IGK 475 >gi|94266686|ref|ZP_01290361.1| tRNA modification GTPase TrmE:Small GTP-binding protein domain:GTP-binding [delta proteobacterium MLMS-1] gi|93452674|gb|EAT03231.1| tRNA modification GTPase TrmE:Small GTP-binding protein domain:GTP-binding [delta proteobacterium MLMS-1] Length = 500 Score = 196 bits (499), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 151/496 (30%), Positives = 253/496 (51%), Gaps = 62/496 (12%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKAS-------LRYFF-- 54 +++TI A++T I IIR+SG +V + + + +P PR+ S LRY + Sbjct: 8 DQQTIAAIATPPGAGGIGIIRISGARAAEVLQQLFRPARP-PREPSAHLPSHRLRYGWIS 66 Query: 55 -GLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEF 113 GR+LD+ + + +P ++T ED E H HGG V+ IL + + +R A PGEF Sbjct: 67 EPASGRLLDEVMAVYMAAPATYTREDVVEIHGHGGHLVLREILALILTIKGVRAAEPGEF 126 Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173 ++RAF NG+IDL AE++ +L+++ET L+++ ++G L L + + +E Sbjct: 127 TKRAFLNGRIDLTRAEAVIELLNAETRQGVELAIQQLAGGLQQRVEAVRQALLAMLAVVE 186 Query: 174 ADLDFSEEED--VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAG 231 +DF +E+D V + ++ L + + + +SQ + G I R G + ILG N G Sbjct: 187 VAIDFPDEDDEIVDHAGLQQQLA--VAVVAPLEQLLSQRRRGRIYREGAAVAILGRPNVG 244 Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR 291 KSSL NAL +++ AIVT +PGTTRD + +++ G V++ DTAGIR+T + VE+ GI+R Sbjct: 245 KSSLLNALLREERAIVTPVPGTTRDTIEESIEVNGVPVRLIDTAGIRDTPESVEEIGIER 304 Query: 292 TFLEVENADLILLLKEINS---KKEISFPKNI---DFIFIGTKSDL-------------- 331 + ADL+LLL + S ++++ +++ + + + K DL Sbjct: 305 SRRHGREADLVLLLVDATSGLVPEDLTLYQSLAGQNLVLVVNKLDLPGPDGQPPKKGDTI 364 Query: 332 --YSTYTEEYDHL-----------------------ISSFTGEGLEELINKIKSILSNKF 366 + T E+ + IS+ TG+GLEEL I + L+ Sbjct: 365 PIFHTRREKRETPAMKNRYGVPLFWRQRFADQPLVGISARTGQGLEELTEAIFTALTGGR 424 Query: 367 KKLP--FSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVD 424 + P +P+ + + V + + +++A L+ A +LG+I G Sbjct: 425 HRDPEHACVPNARHEAALQAALVAARRTTTTLQSGGAPELLAVELQGALAALGEIVGETS 484 Query: 425 VEQLLDIIFSKFCIGK 440 E+LLD IFS+FCIGK Sbjct: 485 GEELLDAIFSRFCIGK 500 >gi|222823559|ref|YP_002575133.1| tRNA modification GTPase, TrmE [Campylobacter lari RM2100] gi|222538781|gb|ACM63882.1| tRNA modification GTPase, TrmE [Campylobacter lari RM2100] Length = 442 Score = 196 bits (499), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 155/455 (34%), Positives = 240/455 (52%), Gaps = 35/455 (7%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A++T +ISIIR+SG + +K+K PR A L + + LD+ L Sbjct: 3 DTIAAIATAHGVGSISIIRVSGDQALEFALKFTRKEKLTPRYAHLCKIYKNNDDFLDEAL 62 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 +I F +P SFTGED EF +HGG ++ +L+EL + RLANPGEFS+RA NGK+DL Sbjct: 63 VIYFKAPYSFTGEDIVEFQLHGGFSLSEILLDELV-LAGARLANPGEFSKRACLNGKMDL 121 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 L+A S+ D I S++ + + + G+LS L +F+E +D+++++ Q Sbjct: 122 LKALSIQDAIMSKSACAANIIAKNIKGDLSKFLNTIRIDLVQTLAFVETSIDYADDDLPQ 181 Query: 186 NF---------SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 + + ++L DI+ IS K G I G+K+ I+G NAGKSSL Sbjct: 182 DLLDQIITMCEKNSKLLRDIV--------DISLSKKGLI--EGFKVAIIGKPNAGKSSLL 231 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N+L D AIV+DI GTTRD + L + +L+KI DTAGIR DD +EK G+ ++ + Sbjct: 232 NSLLAFDRAIVSDIAGTTRDRIEESLKIGSHLIKIIDTAGIRNADDEIEKIGVHLSYESI 291 Query: 297 ENADLILLL----KEINSKKE--ISFPKNID--FIFIGTKSDLYSTYTEEYDHLIS-SFT 347 + AD+I+++ KE + E + K+ D I++ KSDL T +++H IS S Sbjct: 292 KEADIIIVVFDGSKEFEEEDERILQALKDCDKKIIYVLNKSDL----TTKFEHEISTSCI 347 Query: 348 GEGLEELINKIKSILSNKFKKLPFS--IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDII 405 +E IK L+ L + S+ L + A K+ L++ Sbjct: 348 RICAQENTQAIKENLNEYLNTLDGDGMLISNTLILNACKNASEAILRARDLLKESSLELF 407 Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A L LA + + T + +++LD +FS FC+GK Sbjct: 408 AFELNLAIGEIAQFTKDFERDEILDAMFSNFCLGK 442 >gi|309791157|ref|ZP_07685689.1| tRNA modification GTPase TrmE [Oscillochloris trichoides DG6] gi|308226719|gb|EFO80415.1| tRNA modification GTPase TrmE [Oscillochloris trichoides DG6] Length = 456 Score = 196 bits (499), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 151/464 (32%), Positives = 232/464 (50%), Gaps = 40/464 (8%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-RKASLRYFFGLD--GRILD 62 +TI A++T I ++RLSGP + + + + + P P R LRY + +D G +D Sbjct: 4 DTIAAIATPPGEGGIGVVRLSGPQAYTIAQAVFRPLHPGPLRPHRLRYGYVVDASGAPID 63 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 + L +P SFT ED E HGG V L + RLA PGEF+ RAF NG+ Sbjct: 64 EALCTYMRAPRSFTREDVVEISCHGGALPVQMTLARVLAA-GARLARPGEFTLRAFLNGR 122 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFIEADLDF 178 IDL +AE+ D+I ++T L+ + G E+ L Q ++ L ++ + I DF Sbjct: 123 IDLTQAEATLDVIRAQTTAGLALAQAQLGGWLAQEVRDLRAQLLEPLAYLTALI----DF 178 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E+E +E L + + ++ G + R G + ++G N GKSSL NA Sbjct: 179 PEDE----VPHQEYLPALQTSLEGVERLLAGAAQGIVYRQGARAALVGRPNVGKSSLLNA 234 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L + AIVT IPGTTRD L +L+G V + DTAGIRE+ D VE+ G++R+ + Sbjct: 235 LLRVQRAIVTPIPGTTRDTLEETANLDGIPVVLIDTAGIRESHDPVEQLGVERSRQALAG 294 Query: 299 ADLILLLKEINSKK--------EISFPKNIDFIF----IGTKSDLYSTYTEEYDHLI--- 343 ADL LL+ + E+++ K I+ + DL + E+ HL+ Sbjct: 295 ADLALLVLDATVPPGPADRVIAELTYDKPTILIWNKQDVVHNPDLVAPSPFEHPHLLGVV 354 Query: 344 --SSFTGEGLEELINKIKSILSNKFKKLP-----FSIPSHKRHLYHLSQTVRYLEMASLN 396 ++ TG G++ L + I L S P H+ L + +R + +AS Sbjct: 355 ATTATTGAGIDTLSHSISRALLGGAPLGAGAAHLVSSPRHRDALQRAADHLRAV-LASCA 413 Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + +D++A +L +A +LG+ITG E LLD IF++FCIGK Sbjct: 414 QG-VTVDLVAGDLTVALNALGEITGEAVGEDLLDTIFTRFCIGK 456 >gi|225386360|ref|ZP_03756124.1| hypothetical protein CLOSTASPAR_00104 [Clostridium asparagiforme DSM 15981] gi|225047542|gb|EEG57788.1| hypothetical protein CLOSTASPAR_00104 [Clostridium asparagiforme DSM 15981] Length = 470 Score = 196 bits (499), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 152/466 (32%), Positives = 242/466 (51%), Gaps = 35/466 (7%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP------RKASLRYFFGLDG- 58 +TI A++TG S I I+R+SG F V + I + K P R ++ Y F DG Sbjct: 9 DTIAAIATGMSNSGIGIVRISGGEAFAVIDRIFRNKAGKPVKLSQERSHTVHYGFIYDGD 68 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 +D+ L+I+ P SFT ED+ E HGG+ +V ILE + + R A PGEF++RAF Sbjct: 69 ERVDEALVILMRGPRSFTAEDTVEIDCHGGVLMVKKILETVIRY-GARTAEPGEFTKRAF 127 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG+IDL +AE++AD+I+++ + R S+ + G +S + + + +FIE+ LD Sbjct: 128 LNGRIDLSQAEAVADVINAKNDYALRNSVGQLGGSVSKKIKELRAGILYQIAFIESALDD 187 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E + F+ + + +I + + I G ++ G + VILG NAGKSSL N Sbjct: 188 PEHISLDGFA-QSLRAEIEEMTEQVEKLIRSADDGRVMTEGVRTVILGKPNAGKSSLMNV 246 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L +D AIVT+I GTTRD L + L+G + + DTAGIR+T+D+VEK G+ R Sbjct: 247 LIGEDRAIVTEIAGTTRDTLEEHIYLQGISLNVVDTAGIRDTEDVVEKIGVDRAMKAARE 306 Query: 299 ADLILLLKEINSKKEISFPKNIDF------------IFIGTKSDLYS-----TYTEEYDH 341 ADL++ + + ++ + + + +DF I + K+DL + E Sbjct: 307 ADLLIYVVDGSTPLDENDREIMDFIRSNSGEGGKKAIVLLNKTDLETCVDAGVLERETGC 366 Query: 342 L---ISSFTGEGLEELINKIKSILSNKFKKLPFS---IPSHKRHLYHLSQTVRYLEMASL 395 + IS+ +G+E L +IK + + L F+ + RH L + LEM Sbjct: 367 VVIPISAKEEQGIEALEQEIKQMFYH--GTLSFNDEVYITSVRHKEALGRARESLEMVKC 424 Query: 396 N-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + E+ D + +L A LG I G + +++ IF+KFC+GK Sbjct: 425 SVEQGLPEDFYSIDLMDAYEQLGLIIGEAVDDDVVNEIFAKFCMGK 470 >gi|34540645|ref|NP_905124.1| tRNA modification GTPase TrmE [Porphyromonas gingivalis W83] gi|34396959|gb|AAQ66023.1| thiophene and furan oxidation protein ThdF [Porphyromonas gingivalis W83] Length = 518 Score = 196 bits (499), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 151/474 (31%), Positives = 239/474 (50%), Gaps = 46/474 (9%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKK-----PFPRKASLRYFFGLD 57 K+TI AV+T I++IR+SG F++ F+ + K PR A D Sbjct: 53 KDTICAVATAPGVGGIAVIRVSGADAFRLVSPLFLYRGKAIDLSGAKPRTALYGEIMEAD 112 Query: 58 GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 ++D+ +L F P SFT E + E HG I + ILE L RLA PGEF+RRA Sbjct: 113 -ELIDEVILTCFHGPHSFTAEHTVEIACHGSIYIRRRILEALINQ-GCRLAQPGEFTRRA 170 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 + NG++DL AE++AD+I+SE++ Q +++M+ + G S ++L + +E +LD Sbjct: 171 YLNGRMDLSSAEAVADIIASESKAQHQMAMKQLRGGYSEELNALREELLRLTGLMELELD 230 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 F EE DV+ E+L ++ + I +LG ++ G + I+G +N GKS+L N Sbjct: 231 FPEE-DVEFADRTELLALCDQIELKLKKLIDSYRLGNAVKRGIPVAIVGTTNVGKSTLLN 289 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 L ++ AIV+DI GTTRD + + + GYL + DTAG+RET+D +E GI+R+ +++ Sbjct: 290 TLLGEERAIVSDIHGTTRDTIEDTMHIGGYLFRFVDTAGLRETEDTIESLGIERSRSKIK 349 Query: 298 NADLILLL---KEINSKKEISFPKNI-------DFIFIGTKSDLYSTY------------ 335 AD+IL + I+ ++ + K+I I + KS+ + Sbjct: 350 EADIILAVVDGTRISEANQLDYIKSIWDEREERTLILLVNKSESLAEADRIGLSETLQTK 409 Query: 336 --TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA 393 T IS+ G G++EL ++ I+ I S+ RH L + L Sbjct: 410 LSTPTKPIFISAREGRGIDELKGELTQIMETSGANEADLIVSNARHHQLLREAFDALRRM 469 Query: 394 SLNEKDCGLDI------IAENLRLASVSLGKITGC-VDVEQLLDIIFSKFCIGK 440 L G D+ + +LR A S+G+ITG + + L IF+ FCIGK Sbjct: 470 RL-----GFDMGLSTDLLTLDLRHAITSIGEITGREITSDDTLHYIFAHFCIGK 518 >gi|116620213|ref|YP_822369.1| tRNA modification GTPase TrmE [Candidatus Solibacter usitatus Ellin6076] gi|122255446|sp|Q02A42|MNME_SOLUE RecName: Full=tRNA modification GTPase mnmE gi|116223375|gb|ABJ82084.1| tRNA modification GTPase trmE [Candidatus Solibacter usitatus Ellin6076] Length = 444 Score = 196 bits (499), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 140/448 (31%), Positives = 229/448 (51%), Gaps = 21/448 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 ETI A++T + I ++R+SGP + P +A L G +D+ + Sbjct: 5 ETIVAIATPPGRAGIGMVRVSGPDARAIVSRFVTSIAWQPWQAHLAKLLDQQGHEIDQVI 64 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + F P S+T ED E HG V+ +E A RLA PGEF+ RAF NG+IDL Sbjct: 65 VTFFERPRSYTAEDLVEITCHGSPVVLRHAVER-ALEAGARLARPGEFTLRAFLNGRIDL 123 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 AE++ DLI + T Q R++ + + G +S ++L + + +EA +DF+E+ D+ Sbjct: 124 PRAEAVRDLIDATTLYQARIAAQQVEGSVSRRIAPLKEQLLELIALLEAGIDFAED-DIS 182 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 E+L + + + + G ++ G + I+G N GKSSLFN L ++D A Sbjct: 183 VAPPAEILRRLSPVLEGTERLAASFQYGGLVHQGLTLAIVGRPNVGKSSLFNRLLEQDRA 242 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVT+IPGTTRDV++ + G VK+ DTAGIRET++ VE GI+R++ + ++DL L++ Sbjct: 243 IVTEIPGTTRDVVSETAAIGGIPVKLYDTAGIRETEERVESLGIERSYQAIVDSDLALVV 302 Query: 306 KEIN---SKKEISF--PKNIDFIFIGTKSDLYSTYTEEYDHL-ISSFTGEGLEELINKIK 359 ++ + ++ S + + K DL + + + +S+ TG+G+ EL + I Sbjct: 303 LDLTRPVTAEDASLIARAGARALIVANKCDLPAAGDVPAEAIPVSALTGQGVPELRSAIL 362 Query: 360 SILSNKFKKLPFSIPSHK-------RHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLA 412 ++ P + H+ RH L + V YL+ A +++ +L A Sbjct: 363 DAVA------PKGVLEHETGFITSLRHEQLLREAVEYLQKAREAVASIPHEMLLLDLYAA 416 Query: 413 SVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + ITG + +L+ IFS FCIGK Sbjct: 417 LRPIDAITGATTADDILNRIFSTFCIGK 444 >gi|303325513|ref|ZP_07355956.1| tRNA modification GTPase TrmE [Desulfovibrio sp. 3_1_syn3] gi|302863429|gb|EFL86360.1| tRNA modification GTPase TrmE [Desulfovibrio sp. 3_1_syn3] Length = 471 Score = 196 bits (498), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 145/474 (30%), Positives = 240/474 (50%), Gaps = 45/474 (9%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF-PRKASLRYFFGLDGRILDK-- 63 TI A++T I I+RLSGP + + + P PR + R +F GR+LD+ Sbjct: 3 TIAAIATPPGAGGIGIVRLSGP---RAKALLARMFLPLSPRFENFRPWFLHRGRVLDRYG 59 Query: 64 ----GLLIVF-PSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 +L VF P P +FTGED AE H HGG +V +LE + ++ R A GEFSRRAF Sbjct: 60 EALDDVLAVFMPGPRTFTGEDMAEIHCHGGPLIVQAVLESILRL-GARQAERGEFSRRAF 118 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG++DL +AE++A+LI++ + R S+ + G L ++L +R + +DF Sbjct: 119 ANGRMDLSQAEAVAELIAAPSREALRYSLNRLDGLLGRRVLALREELEALRVQVCLAVDF 178 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 EEE V+ + + + + ++ K +++ G +V+ G NAGKSSL NA Sbjct: 179 PEEE-VECLAPAAFGRAVTEVACSVRRLLAGQKRARVMQQGAVVVLAGAVNAGKSSLLNA 237 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD------DIVEKEGIKRT 292 L ++ A+VTDIPGTTRD L DL+G V+++DTAG+R+T+ D VE G+ + Sbjct: 238 LLGRNRALVTDIPGTTRDFLEEACDLDGLPVRLTDTAGLRQTEEGRHGADAVEALGMALS 297 Query: 293 FLEVENADLILLL----------------KEINSKKEISFPKNIDFIFIGTKSDLYST-- 334 ++ AD ILL+ + +++ + + + + KSDL S Sbjct: 298 REKLGEADCILLVLDGARLGEAGAAAESCPDAAARQVLELAGDTPVLLVWNKSDLCSPEL 357 Query: 335 YTEEY-DHL----ISSFTGEGLEELINKIK-SILSNKFKKLPFS--IPSHKRHLYHLSQT 386 + + D L +S+ +G ++ L ++ ++L++ + P P+ ++ L Sbjct: 358 FPPRWADGLSCCKVSARSGGNVDALAMALRQTLLADGCDRPPSDGLAPNARQALALEEAL 417 Query: 387 VRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + + D A L A+ LG++TG ++LD +F++FCIGK Sbjct: 418 AELEALEADVRAGQPYDCCAVRLDTAAAHLGEVTGLSSPAEVLDRVFAQFCIGK 471 >gi|223937602|ref|ZP_03629505.1| tRNA modification GTPase TrmE [bacterium Ellin514] gi|223893765|gb|EEF60223.1| tRNA modification GTPase TrmE [bacterium Ellin514] Length = 457 Score = 196 bits (498), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 148/477 (31%), Positives = 241/477 (50%), Gaps = 66/477 (13%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF------PRKASLRYF-FGL-- 56 +TI A++T +++IRLSG + + K +P P A +G Sbjct: 5 DTIAAIATPLGEGGLAVIRLSGREALSIAD---KSFQPVGKSSINPSAAPTHTIHYGRII 61 Query: 57 -DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIA----VVNGILEELAKMPNLRLANPG 111 G+ +D+ LL V +P + T ED E HGG+ V++ +LE A RLA PG Sbjct: 62 RHGQSVDEVLLAVMRAPRTLTREDVVEITCHGGLLPAKLVLDTVLENGA-----RLAEPG 116 Query: 112 EFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSF 171 EF++RAF NG+IDL +AE++ADLI + TE+ + E ++G+LS D + + Sbjct: 117 EFTKRAFLNGRIDLAQAEAVADLIHARTELALTAANEQLAGKLSQRINALRDDMVKTLAH 176 Query: 172 IEADLDFSEEEDVQNFSSK---------EVLNDILFLKNDISSHISQGKLGEIIRNGYKI 222 +EA +DF +E+ + K E + ++L N+ G+I+R G + Sbjct: 177 VEAHIDFPDEDISPDTKVKLIGRLERGLEFMEELLRTSNE----------GQILRRGIRA 226 Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282 I+G NAGKSSL N L +D AIV+ IPGTTRD + ++ G + DTAG+RE D Sbjct: 227 AIIGRPNAGKSSLLNQLLGRDRAIVSHIPGTTRDTIEETANVRGLPIVFVDTAGLREAGD 286 Query: 283 IVEKEGIKRTFLEVENADLIL---------------LLKEINSKKEISFPKNIDF-IFIG 326 +E EGI+R+ + A+ IL L E + KK I +D + Sbjct: 287 EIEVEGIRRSRETLSKAEFILHVLDASEPLTMADENYLAEFSDKKRILVRNKMDLPAKLD 346 Query: 327 TKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN---KFKKLPFSIPSHKRHLYHL 383 ++ +++ E + +G+G+E L + IKS++ + + L I S + + Sbjct: 347 LQTGIHAPVVE-----VCCLSGKGIETLKDAIKSMVWAGEIRAEMLQVMINSRHQEALNR 401 Query: 384 SQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++ + +L + D L+++A +LR+A ++G+I G E +LD IFS+FCIGK Sbjct: 402 ARSATQRTITAL-KGDETLELVAMDLRIAVNAVGEIVGKTTTEDILDSIFSQFCIGK 457 >gi|268320269|ref|YP_003293925.1| tRNA modification GTPase TrmE [Lactobacillus johnsonii FI9785] gi|262398644|emb|CAX67658.1| tRNA modification GTPase TrmE [Lactobacillus johnsonii FI9785] Length = 461 Score = 196 bits (498), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 150/462 (32%), Positives = 248/462 (53%), Gaps = 36/462 (7%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK----KKKPFPRKASLRYFFGLDGR-- 59 +TI A+ST ISI+RLSG + + K K P ++ Y +D + Sbjct: 9 DTIAAISTPIGEGGISIVRLSGEDAVAIANKLFKGADLTKVP---SHTIHYGHIVDPKTK 65 Query: 60 -ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 ++D+ ++ V +P++FT ED E + HGG+ V N IL+ L R+A+PGEF++RAF Sbjct: 66 DVVDETMVSVLRAPKTFTREDMVEINCHGGMIVTNDILQ-LLLANGARMADPGEFTKRAF 124 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFIEA 174 NG+IDL +AES+ D++ ++T+ R+++M ++G ++ ++ + +D + H E Sbjct: 125 MNGRIDLTQAESVMDIVRAKTDKSRQVAMTQLAGGLLDKIRTMRQELLDTMAHE----EV 180 Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234 ++D+ E D+ + +S+E+ + I + + G+IIRNG I+G N GKSS Sbjct: 181 NIDYPEY-DMDDLTSQEMKKKAEEVSKQIDQLLKTAQEGKIIRNGLATAIVGRPNVGKSS 239 Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294 L N L + D AIVTDI GTTRD L + ++G +K+ DTAGI T+D VEK G++R+ Sbjct: 240 LLNYLTQDDKAIVTDIAGTTRDTLEEYVSVKGVPLKLIDTAGIHHTEDKVEKIGVERSKK 299 Query: 295 EVENADLILLLKEINS------KKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTG 348 + ADL+LLL + + K ++ N I I K DL + ++E I+ Sbjct: 300 AIAEADLVLLLLDASQDLTDEDKNLLNLTANKKRIIILNKQDLGTKISQEMIRKITDNPI 359 Query: 349 EGLEELINKIKSILSNKFKKLPFS---------IPSHKRHLYHLSQTVRYLEMASLNEKD 399 L K L N ++L FS + +++R L++ + LE D Sbjct: 360 IVTSILKQKNMDALENAIEQLFFSGIENSQNQILVTNQRQAGLLAKAKQSLEDVVNGIDD 419 Query: 400 C-GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LD++ +L+ A +LG+ITG ++L+ +FS+FC+GK Sbjct: 420 AMPLDLVQIDLKNAWDTLGEITGESAPDELITQLFSQFCLGK 461 >gi|291515475|emb|CBK64685.1| tRNA modification GTPase trmE [Alistipes shahii WAL 8301] Length = 451 Score = 196 bits (498), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 151/456 (33%), Positives = 238/456 (52%), Gaps = 21/456 (4%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---D 57 MN + +TI A +T A AI++IR+SG F VC+ I + ++P +G Sbjct: 1 MNTDHDTIVAPATAA-GGAIAVIRISGGEAFAVCDRIFRGRRPLAEADGYTVHYGTIAEG 59 Query: 58 GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 R++D L VF +P S+TGE+S E HG +V+ IL L R+A PGEF+ RA Sbjct: 60 DRVIDDVLAAVFRAPHSYTGENSVEISCHGSSYIVSEILRLLIAAGG-RMAQPGEFTIRA 118 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 + GK+DL +AE++AD+I+S + L+ M G S +KL ++ S +E +LD Sbjct: 119 YLAGKLDLSQAEAVADMIASSSRAAHALASTQMRGGYSEELESLREKLLNLTSLLELELD 178 Query: 178 FSEEEDVQNFSSKEVLNDIL-FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 FSEE DV+ F+ + L + + +I S LG IR G + I G N GKS+L Sbjct: 179 FSEE-DVE-FADRTALRATMQRIAAEIDRLRSSFALGNAIREGVAVAIAGAPNVGKSTLL 236 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N L ++ A+V++I GTTRDV+ ++ G L + DTAGIR TDD +E+ GI+RT + Sbjct: 237 NRLLNEERAMVSEIAGTTRDVIEECANIGGVLFRFLDTAGIRPTDDRLEQMGIQRTMSSI 296 Query: 297 ENADLILLLKEINS------KKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL--ISSFTG 348 E A +++ + + ++ + + + K+D + + IS+ G Sbjct: 297 ERARIVIHMVDASTLTGPVPAPDFPLRPGQKLLTVVNKTDKAPAAWRLPEGVVGISAKHG 356 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL--DIIA 406 EG++ L + ++ + + + S+ RH LS L A L+ GL D+++ Sbjct: 357 EGIDALCDALRESVDTEALYHGDPVVSNSRHYEALSAAREALGQA-LDGLAHGLPTDLLS 415 Query: 407 ENLRLASVSLGKIT--GCVDVEQLLDIIFSKFCIGK 440 E +R L IT G + +++L IFSKFCIGK Sbjct: 416 EEIRQVITHLSAITGRGAIAPDEILQNIFSKFCIGK 451 >gi|291278439|ref|YP_003495274.1| tRNA modification GTPase TrmE [Deferribacter desulfuricans SSM1] gi|290753141|dbj|BAI79518.1| tRNA modification GTPase TrmE [Deferribacter desulfuricans SSM1] Length = 442 Score = 196 bits (498), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 156/456 (34%), Positives = 249/456 (54%), Gaps = 36/456 (7%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC---KKKKPFPRKASLRYFFGLDGRILD 62 +TI A T + +++ +IR+SGP F V +++ KK F K F D I D Sbjct: 2 DTIVAPITPLMRTSVIVIRVSGPRAFDVSKYLYVSGKKINDFKHKYVYHGEFIADD-IKD 60 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 + F SP S+TGE+ E HG +V L+ + K+ +RLA PGEF+++AF NGK Sbjct: 61 DVIFYAFHSPNSYTGENVVEISFHGNPIIVQKALKNIYKL-GIRLAEPGEFTKQAFLNGK 119 Query: 123 IDLLEAESLADLISSETEMQRRLSME----GMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 IDL++AE++ +LI S++ S E GM GE+ + +D I S +EA +DF Sbjct: 120 IDLIQAEAVYELIDSKSVTGIYSSYEKLRSGMRGEVDFIKENLLD----ILSVVEAYIDF 175 Query: 179 SEEEDVQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 EE D+ +F K V L++I+F + IS + + + G KI I+G N GKSSL Sbjct: 176 PEE-DLSDFELKYVYERLDNIIF---KLEKLISTFETFKYVNEGVKIAIIGKPNVGKSSL 231 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N L +++ IV+DIPGTTRDV+ +++++GY VK+ DTAGIR ++D +E GI+ + + Sbjct: 232 MNYLLRENRVIVSDIPGTTRDVVEEEINIKGYNVKLIDTAGIRNSNDKIEVIGIEFSKNK 291 Query: 296 VENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGE 349 + A+++L L ++ + ++ K+ + I + K D + D IS TGE Sbjct: 292 LNEANIVLFLFDLEKGVDEDDLQIMNLVKDKNIIKVANKLD-KKMVDIDCDVEISVKTGE 350 Query: 350 GLEELIN----KIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI 404 G+++L+N +IKSI + N+ K S +R + + +++ N LD+ Sbjct: 351 GVDDLLNILEKQIKSIVVVNEDNKQLLS----ERQRDAFLEILNHIQDIKKNFNVLTLDL 406 Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +A +L + ++TG + E LL IF KFCIGK Sbjct: 407 LAVDLHFCLNKISELTGEIYTEDLLKNIFDKFCIGK 442 >gi|312869237|ref|ZP_07729409.1| tRNA modification GTPase TrmE [Lactobacillus oris PB013-T2-3] gi|311095258|gb|EFQ53530.1| tRNA modification GTPase TrmE [Lactobacillus oris PB013-T2-3] Length = 463 Score = 196 bits (498), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 148/474 (31%), Positives = 246/474 (51%), Gaps = 48/474 (10%) Query: 2 NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD-- 57 N E +TI A+ST ISIIR+SG V + + + K + AS +G +D Sbjct: 3 NSENDTIAAISTPVGEGGISIIRISGEDAVAVAKRLYRGSKDLDQVASHTINYGHIVDPD 62 Query: 58 -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 G +D+ ++ V +P ++T ED E + HGG+ N IL+ L R+A PGEF++R Sbjct: 63 TGAEVDEVMVSVMRAPHTYTCEDVIEINCHGGLLATNRILQ-LVLSYGARMAEPGEFTKR 121 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NG+IDL ++E++ DLI ++T+ ++++ + G+LS L + + + +E ++ Sbjct: 122 AFLNGRIDLSQSEAVMDLIRAKTDKSMKVALNQLDGDLSRLIRHLRQDILDVLAQVEVNI 181 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D+ E + V+ ++K + L ++ I + + K G+++R G I+G N GKSSL Sbjct: 182 DYPEYDAVEEMTTKMLKEKALDIQQRIQALLKTAKQGKVLREGLATAIIGRPNVGKSSLL 241 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF--- 293 N L +D AIVTD+ GTTRDV+ ++++G +K+ DTAGIR+TDD VEK G++R+ Sbjct: 242 NTLLHEDKAIVTDVAGTTRDVIEEYVNVDGVPLKLIDTAGIRDTDDTVEKIGVERSKKAL 301 Query: 294 ---------------LEVENADLILLLKEINSKKEI------SFPKNIDFIFIGTKSDLY 332 L E+ + LL K+ I P+ +D D Sbjct: 302 DAADLILLLIDSSAPLTAEDRE---LLTATQGKQRIVILNKTDLPRQVDL-------DEL 351 Query: 333 STYTEEYDHLI--SSFTGEGLEELINKIKSILSNKFKKLPFS--IPSHKRHLYHLSQTVR 388 T D LI S EG+++L +I + N+ + + + ++ RH+ L Q Sbjct: 352 KKLT-AGDALIETSIVKHEGMDQLGQQISRMFFNEGIESSQNNVMVTNARHIGLLHQANA 410 Query: 389 YLEMASLNEKDCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L L + G+ D++ ++ LG+ITG ++LLD +FS+FC+GK Sbjct: 411 ALSDV-LKGINAGMPVDLVQIDMTRCWDLLGEITGDSYQDELLDQLFSQFCLGK 463 >gi|323467508|gb|ADX71195.1| tRNA modification GTPase mnmE [Lactobacillus helveticus H10] Length = 467 Score = 196 bits (497), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 148/469 (31%), Positives = 257/469 (54%), Gaps = 46/469 (9%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK----KKKPFPRKASLRYFFGLD-- 57 E +TI A+ST ISI+R+SG ++ + K K P ++ Y +D Sbjct: 13 EFDTIAAISTPIGEGGISIVRMSGEDAVKIANEVFKGADLTKVP---THTIHYGHIVDPD 69 Query: 58 -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 + +D+ ++ V +P++FT ED E + HGGI V N IL+ L R+A+PGEF++R Sbjct: 70 TDKTIDESMVTVLRAPKTFTREDIVEINCHGGIVVTNHILQLLLSH-GARMADPGEFTKR 128 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFI 172 AF NG+IDL +AES+ D++ ++T+ R++++ ++G ++ ++ + +D L ++ Sbjct: 129 AFVNGRIDLTQAESVMDIVRAKTDKARQVAVGQLAGGLLHKIQAMRQEILDTLANV---- 184 Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232 E ++D+ E D ++K++ + + I + + G+I+RNG I+G N GK Sbjct: 185 EVNIDYPEY-DADAVTAKQMADTAKSVIKKIDRLLKTAQEGKILRNGLATAIVGRPNVGK 243 Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292 SSL N L + D AIVTD+ GTTRD L + ++G +++ DTAGI TDD VEK G++R+ Sbjct: 244 SSLLNYLTQSDKAIVTDVAGTTRDTLEEYVSVKGVPLELIDTAGIHHTDDKVEKIGVERS 303 Query: 293 FLEVENADLILLLKEINSKKEISF--------PKNIDFIFIGTKSDLYSTYTEE------ 338 ++ ADL+LLL I++ +E++ K+ I + KSDL T + Sbjct: 304 KKALDRADLVLLL--IDASQELTAEDKALIEETKDKKRIIVLNKSDLGQKITVDEMKKQT 361 Query: 339 -YDHLISSFTGE----GLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE- 391 D +++S E LEELINK+ + + N ++ + +++R L++ + L+ Sbjct: 362 GSDVILTSILKEKNLDKLEELINKLFFAGIENSNDQV---MVTNQRQTSLLTKAKKELQD 418 Query: 392 MASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + E +DI + A +LG+ITG ++L+ +F +FC+GK Sbjct: 419 VVQAVEDGIPIDIAQIDFTGAWDTLGEITGESAPDELVTQLFRQFCLGK 467 >gi|294784390|ref|ZP_06749681.1| tRNA modification GTPase TrmE [Fusobacterium sp. 3_1_27] gi|294487962|gb|EFG35317.1| tRNA modification GTPase TrmE [Fusobacterium sp. 3_1_27] Length = 455 Score = 196 bits (497), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 148/461 (32%), Positives = 244/461 (52%), Gaps = 35/461 (7%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK---KKKPFPRKASLRYFFGLDG-RIL 61 +TI A+ST ISI+R+SG + E I + KK + S+ Y +D I+ Sbjct: 4 DTIAAISTPRGEGGISIVRMSGQDSLNILEKIFRPKNKKVSELKNYSINYGHIIDNEHIV 63 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121 D+ L+ + +P ++T ED E + HGG V +LE + K R+A GEF++RAF NG Sbjct: 64 DEVLVSIMKAPNTYTREDIIEINCHGGYLVTEKVLEVVLK-NGARIAEIGEFTKRAFLNG 122 Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181 +IDL +AE++ D+I +TE LS+ + G+L + + + I LD+ EE Sbjct: 123 RIDLTQAEAVIDVIHGKTEKSLSLSLNQLRGDLRDKIATIKKSVLDLAAHINVVLDYPEE 182 Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 + + + +++++ +I +S G+II++G K I+G N GKSS+ N+L + Sbjct: 183 -GIDDPVPENLVDNLKKASAEIKDLVSSYDKGKIIKDGIKTAIIGKPNVGKSSILNSLLR 241 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 +D AIVT IPGTTRD++ +++ G + + DTAGIR TDDIVE G++++ + +ADL Sbjct: 242 EDRAIVTHIPGTTRDIIEEVININGIPLLLVDTAGIRNTDDIVENIGVEKSKELINSADL 301 Query: 302 ILLLKE---------------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL--IS 344 IL + + IN+ K I ID K D+ T + + IS Sbjct: 302 ILYVIDTSREIDEEDYRIYDIINTDKVIGILNKIDI-----KKDIDLTKFPKIEKWIEIS 356 Query: 345 SFTGEGLEELINKIKSILSNK-----FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399 + + G++ L N+I + N+ +KL + HK L ++ + L + + Sbjct: 357 ALSKLGIDNLENEIYKYIMNENVEDSSQKLVITNVRHKSALEKTNEAL--LNIIETIDMG 414 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++A +++ A SL ++TG + E LLD IFS FC+GK Sbjct: 415 LPMDLMAVDIKDALDSLSEVTGEISSEDLLDHIFSNFCVGK 455 >gi|149036122|gb|EDL90788.1| rCG38694, isoform CRA_a [Rattus norvegicus] Length = 280 Score = 196 bits (497), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 103/234 (44%), Positives = 146/234 (62%), Gaps = 2/234 (0%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-RKASLRYF-FGLDGRILDKG 64 TIFA+S+G AI++IR SGP+ + ++P P R A LR G LD+ Sbjct: 35 TIFALSSGQGRCAIAVIRTSGPASGLALRSLTALREPPPARSACLRLLRHPCSGEPLDRS 94 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 L++ FP P+SFTGED E HVHGG AVV+G+L+ L +P LR A GEF+RRAF +GK+ Sbjct: 95 LVLWFPGPQSFTGEDCMELHVHGGPAVVSGVLQALGSVPGLRPAKAGEFTRRAFAHGKLS 154 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L E E LADLI +ETE QRR ++ + GELS L W LT + +EA +DF E++++ Sbjct: 155 LTEVEGLADLIHAETEAQRRQALRQLDGELSQLCQGWAKTLTKALAHVEAYIDFGEDDNL 214 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 + ++V D+ L+ +SSH+ + G+ +R+G +V+ G NAGKSSL A Sbjct: 215 EEGVLEQVDRDVRALEVALSSHLRDARRGQRLRSGANVVVAGPPNAGKSSLPEA 268 >gi|227889160|ref|ZP_04006965.1| tRNA modification GTPase TrmE [Lactobacillus johnsonii ATCC 33200] gi|227850389|gb|EEJ60475.1| tRNA modification GTPase TrmE [Lactobacillus johnsonii ATCC 33200] Length = 487 Score = 196 bits (497), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 150/462 (32%), Positives = 248/462 (53%), Gaps = 36/462 (7%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK----KKKPFPRKASLRYFFGLDGR-- 59 +TI A+ST ISI+RLSG + + K K P ++ Y +D + Sbjct: 35 DTIAAISTPIGEGGISIVRLSGEDAVAIANKLFKGADLTKVP---SHTIHYGHIVDPKTK 91 Query: 60 -ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 ++D+ ++ V +P++FT ED E + HGG+ V N IL+ L R+A+PGEF++RAF Sbjct: 92 DVVDETMVSVLRAPKTFTREDMVEINCHGGMIVTNDILQ-LLLANGARMADPGEFTKRAF 150 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFIEA 174 NG+IDL +AES+ D++ ++T+ R+++M ++G ++ ++ + +D + H E Sbjct: 151 MNGRIDLTQAESVMDIVRAKTDKSRQVAMTQLAGGLLDKIRTMRQELLDTMAHE----EV 206 Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234 ++D+ E D+ + +S+E+ + I + + G+IIRNG I+G N GKSS Sbjct: 207 NIDYPEY-DMDDLTSQEMKKKAQEVSKQIDQLLKTAQEGKIIRNGLATAIVGRPNVGKSS 265 Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294 L N L + D AIVTDI GTTRD L + ++G +K+ DTAGI T+D VEK G++R+ Sbjct: 266 LLNYLTQDDKAIVTDIAGTTRDTLEEYVSVKGVPLKLIDTAGIHHTEDKVEKIGVERSKK 325 Query: 295 EVENADLILLLKEINS------KKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTG 348 + ADL+LLL + + K ++ N I I K DL + ++E I+ Sbjct: 326 AIAEADLVLLLLDASQDLTDEDKNLLNLTANKKRIIILNKQDLGTKISQEMIREITDNPI 385 Query: 349 EGLEELINKIKSILSNKFKKLPFS---------IPSHKRHLYHLSQTVRYLEMASLNEKD 399 L K L N ++L FS + +++R L++ + LE D Sbjct: 386 IVTSILKQKNMDALENAIEQLFFSGIENSQNQILVTNQRQAGLLAKAKQSLEDVVNGIDD 445 Query: 400 C-GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LD++ +L+ A +LG+ITG ++L+ +FS+FC+GK Sbjct: 446 AMPLDLVQIDLKNAWDTLGEITGESAPDELITQLFSQFCLGK 487 >gi|238926591|ref|ZP_04658351.1| tRNA modification GTPase TrmE [Selenomonas flueggei ATCC 43531] gi|238885537|gb|EEQ49175.1| tRNA modification GTPase TrmE [Selenomonas flueggei ATCC 43531] Length = 466 Score = 196 bits (497), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 141/459 (30%), Positives = 234/459 (50%), Gaps = 25/459 (5%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP------FPRKASLRYFFGLDG 58 ++TI ++T I IIR+SG V + + P A + DG Sbjct: 10 EDTISQIATPHGAGGIGIIRVSGEDALGVARRVFRPAAGGTLGDMAPYTARYGHIVAADG 69 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 ++D+ +L+ +P S+TGED+AE HGG V+ +L + R A GEF++RAF Sbjct: 70 TVIDECILLYMRAPHSYTGEDTAELQCHGGAVVLREVLLRTWEA-GARPAEAGEFTKRAF 128 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 +G++DL AES+ +LI++++ + E ++G S ++ + IEA +DF Sbjct: 129 LHGRLDLARAESVMELIAAKSTRAAHAARERLAGAFSHAVTDIRTQILGAVAHIEAGIDF 188 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E+ D+ S++ + +I + ++ G I+R+G K VI+G N GKSSL NA Sbjct: 189 PED-DIPAASAEHLAAEIDAASAAVRRLLAGADTGRILRDGVKTVIVGRPNVGKSSLLNA 247 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L + AIVTD+PGTTRD++ ++ + G +++ DTAG+R +D VE+ G+ RT + + Sbjct: 248 LLGMERAIVTDVPGTTRDIIEEEISVAGIPLRLLDTAGLRAAEDAVEQIGVARTEQHLTD 307 Query: 299 ADLIL--------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT-EEYDHL------I 343 A+LIL L E ++ D I + +K D S + E++ + I Sbjct: 308 AELILAVFDASEPLTAEDHALLARLSAAAADIIILCSKEDRPSVLSAEDFAAVAAPVLRI 367 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLP-FSIPSHKRHLYHLSQ-TVRYLEMASLNEKDCG 401 S+ G GL+ L +I + + + L ++P+ +R + L + A D G Sbjct: 368 SAQEGTGLDALREEIAAHIVQREGDLSDGALPNKEREIEALRRAEAHLAAAAETLAADLG 427 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D ++ +LR A +LG+I G L+D IFS+FCIGK Sbjct: 428 TDFVSIDLRAAYDALGEILGETVDTDLIDRIFSEFCIGK 466 >gi|212550616|ref|YP_002308933.1| tRNA modification GTPase TrmE [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212548854|dbj|BAG83522.1| tRNA modification GTPase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 464 Score = 196 bits (497), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 148/463 (31%), Positives = 239/463 (51%), Gaps = 33/463 (7%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFI----CKKKKPFPRKASLRYFFGL---DGR 59 TI A++T ++IIR+SG + I K +A+ FG+ + Sbjct: 6 TICAIATPPGQGGVAIIRISGKEALAIASRIYTPKAKNITTIEDQAAYTSSFGIIHKENE 65 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 ILDK ++ VF SP SFTGED+ E HG I + I++ L LA PGEF+++AF Sbjct: 66 ILDKVVVFVFRSPHSFTGEDTVEITCHGSIYIQQEIIKLLLD-NGCHLARPGEFTQKAFL 124 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NGK+DL +AES+ DLISS + RL+ M G +L S IE +LDF Sbjct: 125 NGKMDLSQAESVIDLISSSSAAAHRLAFNQMRGGFGKKLKNLRFQLLRFVSLIELELDF- 183 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 EEDV+ ++L+ +L +K+ +S I LG I+NG +VI+G +N GKS+L N L Sbjct: 184 -EEDVEFVDRVKLLDSVLSIKDTLSHLIQSFSLGNAIKNGIPVVIIGETNVGKSTLLNHL 242 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 ++ AIV++I GTTRD++ +++ G + DTAGIR T + +E GI+RT+ +++ A Sbjct: 243 LNEEKAIVSEIHGTTRDIIEDVINISGIAFRFIDTAGIRNTKNEIELLGIERTYQKIKKA 302 Query: 300 DLILLLKEINS-KKEIS-FPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINK 357 +++ + + KEI I + + K + ++ +H F + L I+ Sbjct: 303 SIVIWMIDATKFNKEIKHIADRISPLIMDKKLIVIFNKIDKLNHSKQFFLKKKLPH-ISA 361 Query: 358 IKSILSNKFKK-----------------LPFS--IPSHKRHLYHLSQTVRYLEMASLNEK 398 LS K+K+ L ++ I ++ RH L + L+ K Sbjct: 362 EYICLSAKYKRNTDILEKTLLEAAKLSSLNYNDIIVTNMRHYEALRSALGALQRIEEGLK 421 Query: 399 -DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + ++I++++R + LG+ITG + +++L+ IF FCIGK Sbjct: 422 TNVSYELISQDIRECTHYLGEITGEISTDEILENIFKNFCIGK 464 >gi|291457893|ref|ZP_06597283.1| tRNA modification GTPase TrmE [Oribacterium sp. oral taxon 078 str. F0262] gi|291419437|gb|EFE93156.1| tRNA modification GTPase TrmE [Oribacterium sp. oral taxon 078 str. F0262] Length = 459 Score = 196 bits (497), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 159/465 (34%), Positives = 242/465 (52%), Gaps = 31/465 (6%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK----PFPRKASLRYFFGL 56 M ++TI A++T A + I IIR+SG V + + K + +RY F Sbjct: 1 MERAEDTICALATAAAEAGIGIIRISGEHALSVAGSLLRTKSGERLDLSKPNRVRYAFVY 60 Query: 57 DGR-ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 D +D+ L+ F +P S+TGEDS E + HGG+ ++ +L L R A PGEF++ Sbjct: 61 DNEEAVDEVLVTSFLAPHSYTGEDSVEINCHGGVLLLQKVLS-LCVRSGARPAEPGEFTK 119 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG++DL EAE+++DLI + +E R + + G LS + L ++IEA Sbjct: 120 RAFLNGRLDLSEAEAVSDLIHARSEDAIRAGLSQLRGSLSRKIREMRKILLEDDAYIEAA 179 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKND--ISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233 LD E ++ FS K L+ L++ + + S G+L +R G + VI+G NAGKS Sbjct: 180 LDDPEHISLEGFSEKLRLHAESLLRDTEALEASFSSGRL---LREGIRTVIVGKPNAGKS 236 Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293 SL NAL ++ AIVT+I GTTRD L +L L+ ++ DTAGIRET+D VE+ G++R Sbjct: 237 SLLNALLGEERAIVTEIEGTTRDTLEEELSLKDLNLRAIDTAGIRETEDPVERIGVERAK 296 Query: 294 LEVENADLILLL----KEINSKKE--ISFPKNIDFIFIGTKSDLYSTYTEEYDHL----- 342 E+ADLI+ + + ++S E + F + + KSDL + +EE Sbjct: 297 KAAEDADLIIYVVDASRPLDSSDEEILRFLPGKKALLLLNKSDLRTIISEEEMKKRSGCP 356 Query: 343 ---ISSFTGEGLEELINKIKSILSNK----FKKLPFSIPSHKRHLYHLSQTVRYLEMASL 395 IS+ T EG+ L KI+ + ++L ++ L + Q +R E+ Sbjct: 357 VLSISARTEEGISMLSEKIREMFFGGELRWNQELIICSERQRKLLQNAGQALR--ELCRS 414 Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E D ++ A LG+I G E L+D IFSKFC+GK Sbjct: 415 IEIGMPEDFYTIDIMRAYEELGQILGERVSEDLIDEIFSKFCMGK 459 >gi|120602958|ref|YP_967358.1| tRNA modification GTPase TrmE [Desulfovibrio vulgaris DP4] gi|205829135|sp|A1VER5|MNME_DESVV RecName: Full=tRNA modification GTPase mnmE gi|120563187|gb|ABM28931.1| tRNA modification GTPase trmE [Desulfovibrio vulgaris DP4] Length = 457 Score = 196 bits (497), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 131/398 (32%), Positives = 210/398 (52%), Gaps = 22/398 (5%) Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD L + P P +FTGED +E H HGG V+ +LE + R A GEF+RRAF N Sbjct: 64 LDDVLAVHMPGPRTFTGEDVSEIHCHGGSGVLAAVLEACVRH-GARYAERGEFTRRAFLN 122 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G++DL +AE++A++I++ + RL+ + G L G +L +R + +DF E Sbjct: 123 GRMDLTQAEAVAEMIAAPSREGMRLAQAKLDGLLGQRVGALRARLDALRMQLCVAVDFPE 182 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE V+ + + L +I ++ + + ++G +V+ G NAGKSSL NAL Sbjct: 183 EE-VECLAPEAFLAEIEAVRQGVVELSAGYARTRCWQDGALVVLAGQVNAGKSSLMNALL 241 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 + AIVTD+PGTTRD + L+L G ++++DTAG+RET DIVE+EG++ + V AD Sbjct: 242 GRRRAIVTDLPGTTRDFIEEPLNLSGLAIRLADTAGLRETGDIVEQEGVRMSRDLVAQAD 301 Query: 301 LILLLKEIN---SKKEISF-----PKNIDFIFIGTKSDL-----YSTYTEEYDHL-ISSF 346 L+LL+ + E+ P+ + +F K+DL + E + +++ Sbjct: 302 LVLLVTDATQGLQGPELELLRHAGPERVLVVF--NKTDLLEGRILPSAPEGCRSVHVAAA 359 Query: 347 TGEGLEELINKIK-SILSNKFKKLPFS--IPSHKRHLYHLSQTVRYL-EMASLNEKDCGL 402 +G+G+E L+ I+ ++L+ P + + + R L + L E+A Sbjct: 360 SGDGVESLVTAIRAAVLAATGAGEPEAGELAPNMRQAAALDKAATILDELAGDIRAHVPY 419 Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D+ L A +L +TG E +LD IF+ FCIGK Sbjct: 420 DLCGVRLDGACAALMDVTGQSTPEAILDAIFASFCIGK 457 >gi|256846684|ref|ZP_05552140.1| tRNA modification GTPase TrmE [Fusobacterium sp. 3_1_36A2] gi|256717904|gb|EEU31461.1| tRNA modification GTPase TrmE [Fusobacterium sp. 3_1_36A2] Length = 455 Score = 196 bits (497), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 150/459 (32%), Positives = 242/459 (52%), Gaps = 31/459 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK---KKKPFPRKASLRYFFGLDG-RIL 61 +TI A+ST ISI+R+SG + E I K KK + S+ Y +D I+ Sbjct: 4 DTIAAISTPRGEGGISIVRMSGQDSLNILEKIFKPKNKKVSELKNYSINYGHIIDNEHIV 63 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121 D+ L+ + +P ++T ED E + HGG V +LE + K R+A GEF++RAF NG Sbjct: 64 DEVLVSIMKAPNTYTREDIIEINCHGGYLVTEKVLEVVLK-NGARIAEIGEFTKRAFLNG 122 Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181 +IDL +AE++ D+I +TE LS+ + G+L + + + I LD+ EE Sbjct: 123 RIDLTQAEAVIDVIHGKTEKSLSLSLNQLRGDLRDKIATIKKSVLDLAAHINVVLDYPEE 182 Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 + + + +++++ +I +S G+II++G K I+G N GKSS+ N+L + Sbjct: 183 -GIDDPVPENLVDNLKKASAEIRDLVSSYDKGKIIKDGIKTAIIGKPNVGKSSILNSLLR 241 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 +D AIVT IPGTTRD++ +++ G + + DTAGIR TDDIVE G++++ + +ADL Sbjct: 242 EDRAIVTHIPGTTRDIIEEVININGIPLLLIDTAGIRNTDDIVENIGVEKSKELINSADL 301 Query: 302 ILLLKE---------------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF 346 IL + + IN+ K I ID I DL E IS+ Sbjct: 302 ILYVIDTSREIDEEDFRIYDIINTDKVIGILNKID---IKKDIDLSRFPKIEKWIEISAL 358 Query: 347 TGEGLEELINKIKSILSNK-----FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401 + G++ L N+I + N+ +KL + HK L ++ + L + + Sbjct: 359 SKMGIDNLENEIYKYIMNENVEDSSQKLVITNVRHKSALEKTNEAL--LNIIETIDMGLP 416 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++A +++ A SL ++TG + E LLD IFS FC+GK Sbjct: 417 MDLMAVDIKDALDSLSEVTGEISSEDLLDHIFSNFCVGK 455 >gi|33519494|ref|NP_878326.1| tRNA modification GTPase TrmE [Candidatus Blochmannia floridanus] gi|46577399|sp|Q7VQV3|MNME_BLOFL RecName: Full=tRNA modification GTPase mnmE gi|33517157|emb|CAD83539.1| GTPase for tRNA modification and thiophene and furan oxidation [Candidatus Blochmannia floridanus] Length = 474 Score = 196 bits (497), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 161/479 (33%), Positives = 257/479 (53%), Gaps = 47/479 (9%) Query: 2 NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRIL 61 N+E +TI A+ST I IIR+SG +V + K P PR A +G I+ Sbjct: 3 NNEIDTIAAISTPIGRGGIGIIRVSGKLVPEVAMKLFNKI-PKPRTAEYLTCIDHNGSIM 61 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN-LRLANPGEFSRRAFEN 120 +K + + FP P SFTGE+ E H HGG +++ +L+ + + + +RLANPGEF+ RAF N Sbjct: 62 EKVITLFFPEPHSFTGENILEIHGHGGQMILDLLLDRILNISSRIRLANPGEFTERAFLN 121 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 KIDL++AES+AD+I++ + + + + G S+ ++K+T+ R++IE+ LDFS+ Sbjct: 122 EKIDLIQAESIADIINATSYQAAKSACNSLQGHFSNQIRIILNKITNFRTYIESTLDFSD 181 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 +E + + S + + N + + ++ + G ++R+G K+VI G NAGKSSLFN+L Sbjct: 182 QE-ISDISYQHIYNTLQNIIDNTNQICKLTHSGVLLRDGIKVVIAGKPNAGKSSLFNSLI 240 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEVENA 299 KD AI+++I GTTRD+L + L G I DTAG ++ + + +E G++++ E+ A Sbjct: 241 NKDRAIISNISGTTRDILHEYIQLNGIAFHIIDTAGFKKNSTNEIELIGMQKSKYELSKA 300 Query: 300 DLILLLKEINS--------------KKEISFPKNIDFIFIG---TKSDLYSTY-----TE 337 D IL + + KKE+S NI+ +FI KSDL + T Sbjct: 301 DHILWVIDSTDYSHNNSYNNIINSLKKELS-SNNIEAVFITIIRNKSDLSFEHNGIDTTN 359 Query: 338 EYDHL-ISSFTGEGLEELINKI-KSILSNKFKKLPFS--------IPSHKRHLYHLSQTV 387 +Y + +S+ G++ L + S + K FS + KRHL L + Sbjct: 360 KYACITLSALLNHGIDLLKKHLYDSAMLQIHKNSNFSSVEENQGNFIARKRHLKILQKVF 419 Query: 388 RYLEMA------SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +YL A ++ DC AE+L+ A L +I G + + LL+ IF FCIGK Sbjct: 420 QYLLSAKTQLQYNMTVNDC----FAEDLKKAHEELAQIFGKLTPDDLLEEIFRAFCIGK 474 >gi|322698186|gb|EFY89958.1| GTPase family protein [Metarhizium acridum CQMa 102] Length = 483 Score = 196 bits (497), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 145/450 (32%), Positives = 221/450 (49%), Gaps = 79/450 (17%) Query: 60 ILD-KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN---LRLANPGEFSR 115 ILD + LL+ FPSP++ TGE+ E HVHGG A V +L + K +R A PGEF++ Sbjct: 33 ILDVEALLLYFPSPKTVTGEEVLELHVHGGPATVKAVLSAIPKCQTSTRVRYAEPGEFTK 92 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG++DL + ESL D + +ETE QRR ++ G SG L Y W L R IEA Sbjct: 93 RAFFNGRLDLAQIESLGDTLDAETEQQRRAAVRGNSGALGRSYEDWRHHLLQARGEIEAL 152 Query: 176 LDFSEEEDVQNF--SSKEVLNDILFLKNDISSHISQGKLG----EIIRNGYKIVILGHSN 229 +DFSE+ Q+F S E+L ++ I I +LG E++RNG +I ++G N Sbjct: 153 IDFSED---QHFDESQSELLGNVARQVAKILHSIDLHELGSQRSELLRNGIRIALVGPPN 209 Query: 230 AGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---ETDD---- 282 GKSSL N + ++ +IV+ GTTRD++ LD+ G+L +DTAG R ET D Sbjct: 210 TGKSSLMNIIVGREASIVSGEAGTTRDIVEASLDIRGFLCSFADTAGFRSKTETSDEVIG 269 Query: 283 IVEKEGIKRTFLEVENADLILLLKEINSKKE---ISFPKNIDFIFIGTKSDLYSTYTEEY 339 VE+EGI+R + +D++++L + + I F K I +S L ++ Sbjct: 270 AVEEEGIRRARERAQESDMVVVLASVEAGPSGPFIHFDKETMAIATEAQSSLVIVNKQD- 328 Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLP----------------------------- 370 + G L L+ + + ++ ++ LP Sbjct: 329 -----TVDGGILSHLLQQFRQLIREEYPSLPQEPICISCKEDGSASKDGGVQHVVNALVA 383 Query: 371 -FS----IPSHKRHLYHLSQTVR------------YLEMASLNEK-DCGLDIIAENLRLA 412 FS +P R L +++ R +++ A E D + + AE LR A Sbjct: 384 SFSQMTDMPPDMRDLLGVTERQRQLLAKCRGHLEDFMDEAQPREGLDSDIVLAAEYLRYA 443 Query: 413 SVSLGKITG---CVDVEQLLDIIFSKFCIG 439 + L +ITG DVE++L ++F K+ G Sbjct: 444 ADCLARITGKGEAGDVEEVLGVVFEKYASG 473 >gi|254302386|ref|ZP_04969744.1| thiophene/furan oxidation protein ThdF [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322578|gb|EDK87828.1| thiophene/furan oxidation protein ThdF [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 455 Score = 195 bits (496), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 149/459 (32%), Positives = 242/459 (52%), Gaps = 31/459 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK---KKKPFPRKASLRYFFGLDG-RIL 61 +TI A+ST ISI+R+SG + E I + KK + S+ Y +D I+ Sbjct: 4 DTIAAISTSRGEGGISIVRMSGQDSLNILEKIFRPKNKKVSELKNYSINYGHIIDNEHIV 63 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121 D+ L+ + +P ++T ED E + HGG V +LE + K R+A GEF++RAF NG Sbjct: 64 DEVLVSIMKAPNTYTREDIIEINCHGGYLVTEKVLEVVLK-NGARIAEIGEFTKRAFLNG 122 Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181 +IDL +AE++ D+I +TE LS+ + G+L + + + I LD+ EE Sbjct: 123 RIDLTQAEAVIDVIHGKTEKSLSLSLNQLRGDLRDKIATIKKSVLDLAAHINVVLDYPEE 182 Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 + + + +++++ +I +S G+II++G K I+G N GKSS+ N+L + Sbjct: 183 -GIDDPVPENLVDNLKKASAEIKELVSSYDKGKIIKDGIKTAIIGKPNVGKSSILNSLLR 241 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 +D AIVT IPGTTRD++ +++ G + + DTAGIR TDDIVE G++++ + +ADL Sbjct: 242 EDRAIVTHIPGTTRDIIEEVININGIPLLLVDTAGIRNTDDIVENIGVEKSKELINSADL 301 Query: 302 ILLLKE---------------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF 346 IL + + IN+ K I ID I DL E IS+ Sbjct: 302 ILYVIDTSREIDEEDYRIYDIINTDKVIGILNKID---IKQDIDLSKFPKIEKWIEISAL 358 Query: 347 TGEGLEELINKIKSILSNK-----FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401 + G++ L N+I + N+ +KL + HK L ++ + L + + Sbjct: 359 SKIGIDNLENEIYKYIMNENVEDSSQKLVITNVRHKSALEKTNEAL--LNIIETIDMGLP 416 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++A +++ A SL ++TG + E LLD IFS FC+GK Sbjct: 417 MDLMAVDIKDALDSLSEVTGEISSEDLLDHIFSNFCVGK 455 >gi|269115231|ref|YP_003302994.1| tRNA modification GTPase [Mycoplasma hominis] gi|268322856|emb|CAX37591.1| tRNA modification GTPase [Mycoplasma hominis ATCC 23114] Length = 448 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 149/454 (32%), Positives = 243/454 (53%), Gaps = 23/454 (5%) Query: 2 NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD---G 58 N+ ++TI A+S+G + AISIIRLSG ++ + + K + ++ Y +D G Sbjct: 3 NNIQDTIVAISSGNVNQAISIIRLSGEDSIEIVKKVFSGK--VGKDKTITYGNIIDNITG 60 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 +I+D+ L+ F +++TGE++ E + HGGI V N IL L RLAN GEF+RRAF Sbjct: 61 KIVDEVLVNWFIGNKNYTGENTVEINAHGGIVVTNKILNLLI-ANGARLANRGEFTRRAF 119 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NGKI L +AE++ LI ++T Q +++ + + + + I++L I S IE ++D+ Sbjct: 120 LNGKISLDKAEAINSLIHAKTNKQAEIAISQFNSKDNLIIENLINELLTIISLIEINIDY 179 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 S+ D++ + + + + + S I++ + I G + I+G N GKSSL N+ Sbjct: 180 SDYNDIKEMDANTLTSQLSKFNRKLDSIINKSENACDIYKGINVAIVGRPNTGKSSLLNS 239 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L AIVT+IPGTTRDV+ + + G+L + DTAGIR+T D+VE GI+R+ ++ Sbjct: 240 LIGSQKAIVTNIPGTTRDVVEGEFQINGFLFNLIDTAGIRQTKDLVESIGIERSKNAIKE 299 Query: 299 ADLILLLKE--INSKKEISFPKNID----FIFIGTKSDLYSTYTEEYDHLISSFTGEGLE 352 A +++ + E I +E K + +I + K DL + + ++ S L Sbjct: 300 AKIVIHMHEPFIKENEEDQIIKELSKGKVYIPVMNKQDLLNKDQYPKNMVLISSKENSLW 359 Query: 353 ELINKIKSILSNKFKKLPFSIPS---HKRHLYHLSQTVRYLEMA--SLNEKDCGLDIIAE 407 EL K+ L + + P + R L L Q + A SL++ G +++ Sbjct: 360 EL----KNALVKNYLNIDLDDPQIIFNNRKLSLLKQAKISINTALESLSQ-GLGPEVVIL 414 Query: 408 NLRLASVSLGKITGCV-DVEQLLDIIFSKFCIGK 440 ++ A SL +I D E LLD IFSKFC+GK Sbjct: 415 DINEAWGSLSEILNKKHDNEALLDNIFSKFCLGK 448 >gi|225619284|ref|YP_002720510.1| tRNA modification GTPase TrmE [Brachyspira hyodysenteriae WA1] gi|254811473|sp|C0QXH9|MNME_BRAHW RecName: Full=tRNA modification GTPase mnmE gi|225214103|gb|ACN82837.1| tRNA modification GTPase TrmE [Brachyspira hyodysenteriae WA1] Length = 464 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 148/465 (31%), Positives = 253/465 (54%), Gaps = 36/465 (7%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC-------KKKKPFPRKASLRYFFGLD 57 K+TI A+ST SA++IIR+SG ++ IC K F + S + Sbjct: 7 KDTIAALSTPYSKSALAIIRMSGSKALEIASKICFYANNENKNINNFEHRKSYYALIKDE 66 Query: 58 GRI-LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 I +D+ +++ SP +FT ED+ EF HG I V++ ++ L K R AN GEF+ R Sbjct: 67 NNIPVDEVIVLSSLSPNTFTSEDTIEFISHGSIVVIDALMNLLIK-NGARAANRGEFTYR 125 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 A+ NG+I + EAE++ DLI S ++ S+ M G L+ + + + + + +L Sbjct: 126 AYINGRIGISEAEAIHDLIDSNNKLMAEASIYKMRGRLTREIDKLRENIKNSLMLVYGEL 185 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 DF E+E ++FS +++ + +K DI + +S K E + NG K+ ILG NAGKSS+F Sbjct: 186 DFPEDE-TESFSYDKLIENFEIIKKDIENILSNSKRVENLINGIKVAILGRVNAGKSSIF 244 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RETDDIVEKEGIKRTFLE 295 N + ++ AIV++I GTTRD L+ ++ +E + DTAG ++ D+ +E EGI+R Sbjct: 245 NMILDRERAIVSNIAGTTRDFLSENIYIENIPFYLMDTAGFHKKADNDIELEGIERAKKC 304 Query: 296 VENADLILLL---------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL---- 342 +D+IL + +IN + ++ +N + I+I KSD + +E D+ Sbjct: 305 AYESDIILAVFDGSDIANEDDINLIEFLNALENKNIIYILNKSDEDKKFNKEIDNANIIN 364 Query: 343 ISSFTGEGLEELINKIKSILSNK----FKKLPFSIPSHKRHLYHLSQTVRYLEMA---SL 395 IS+ T +G ++LI+ +K +S+ F K + + R +L ++ +++ SL Sbjct: 365 ISTKTKDGKDKLISALKDYVSDSDMDIFNKETY---VNNRERCYLENGLKQIDICIKKSL 421 Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + LD +AE + + + LG ++G VD E++++ IF+ FCIGK Sbjct: 422 --ESYSLDEVAEEMNILNNILGNVSGKVDAEEVINEIFANFCIGK 464 >gi|302388592|ref|YP_003824414.1| tRNA modification GTPase TrmE [Clostridium saccharolyticum WM1] gi|302199220|gb|ADL06791.1| tRNA modification GTPase TrmE [Clostridium saccharolyticum WM1] Length = 459 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 151/460 (32%), Positives = 235/460 (51%), Gaps = 31/460 (6%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASL------RYFFGLDG-R 59 TI A++T S I I+R+SG FQ+ + I K K +K SL Y DG Sbjct: 5 TIAAIATAMSSSGIGIVRISGEESFQIIDRIFKAKGNGEKKLSLEPSHTIHYGCIYDGDE 64 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 I+D+ L+++ P S+T ED+ E HGG+ V ILE + K R A PGEF++RAF Sbjct: 65 IIDEVLVLIMKGPRSYTAEDTVEIDCHGGVLVTKRILETVLKY-GARPAEPGEFTKRAFL 123 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NG++DL +AE++ D+I ++ + S+ + G +S +K+ + +FIE+ LD Sbjct: 124 NGRVDLSQAEAVIDVIHAKNNYALKSSVSQLEGAVSRKIKDMREKIIYQIAFIESALDDP 183 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 E + + + +L + +K +++ I G ++ G + VILG NAGKSSL N L Sbjct: 184 EHISLDGYQ-ELLLKTLEPIKEELNLLIKSSDNGRVLSEGIETVILGKPNAGKSSLLNVL 242 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 ++ AIVTDI GTTRD L + LE + I DTAGIR+T D+VEK G+++ + A Sbjct: 243 VGEERAIVTDIAGTTRDTLKEQIRLEDLSLNIIDTAGIRDTQDVVEKIGVEKARSAAQEA 302 Query: 300 DLIL---------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLIS 344 DLI+ +L I S+K + D I + T+ D+ T IS Sbjct: 303 DLIIYVVDGSCPLDENDEEILTFIESRKAVVLLNKTDLIPVVTE-DMLKMRTRHQVIPIS 361 Query: 345 SFTGEGLEELINKIKSILSNK----FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC 400 + G+ L N+IK++ + ++ + HK L +++ +E + NE Sbjct: 362 AKERLGIGNLENEIKAMFYHGEIDFNDQVYITNVRHKNALLEALKSLSMVEQSVRNE--M 419 Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D + +L A LG I G + L++ IF KFC+GK Sbjct: 420 PEDFYSIDLMDAYEQLGTILGESVEDDLVNEIFRKFCMGK 459 >gi|42560644|ref|NP_975095.1| tRNA modification GTPase TrmE [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|81400855|sp|Q6MUE7|MNME_MYCMS RecName: Full=tRNA modification GTPase mnmE gi|42492140|emb|CAE76737.1| tRNA modification GTPase, TrmE [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|301320928|gb|ADK69571.1| tRNA modification GTPase TrmE [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 452 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 137/449 (30%), Positives = 242/449 (53%), Gaps = 15/449 (3%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +T+ A +T AI++IR+SG F + + K KK ++ + ++D+ + Sbjct: 5 DTVVAPATNISTQAIALIRVSGSEAFLIVNKLIKDKKLEEKRGLFLRKLYFEDELIDEVV 64 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 L F +P SFTGE+ E HGGI N I+ L + R+A GEFS+R+F NGKIDL Sbjct: 65 LSCFVAPNSFTGENVVEIACHGGILNTNKIINILIQ-SGARMALRGEFSQRSFLNGKIDL 123 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 ++AE + +LI ++ E+ ++ + MSG + + D L I S I+ +D+ + +DV+ Sbjct: 124 IQAEGINNLIHAKNELALKIGVANMSGSNNKAIIELKDNLLDIISRIQVSIDYPDYDDVE 183 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S +++ N + + + I+ + + K+ G K I+G +N GKSS+ NAL +D A Sbjct: 184 GSSIEDLTNLLEIINDQINKLLMRSKMAFKNSEGIKTAIIGQTNVGKSSILNALINEDKA 243 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL- 304 IVTDIPGTTRD++ ++LE + + DTAGIR+T D+VE GI ++ + ADL+L Sbjct: 244 IVTDIPGTTRDIVEGQINLENVSLNLIDTAGIRKTSDVVENLGILKSKNLINEADLVLFV 303 Query: 305 -----LKEINSKKEISFPKNIDFIFIGTKSDLYS-----TYTEEYDHLI-SSFTGEGLEE 353 + ++++++ KN +I I K++ S ++Y +++ +S +++ Sbjct: 304 VNKENINDLDNQEIFELLKNKTYILIVNKAEKLSKTEKQNLEKKYQNIVFTSAINHDIDQ 363 Query: 354 LINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDIIAENLRL 411 L+ +I + L+ + K I + + Q L A S+ + +DI+ +L Sbjct: 364 LVLRINQMYLNEEINKNDELILIGLNQITLVEQIKNKLSTALSIIKSGMPIDIVNVDLYD 423 Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A L ++ G ++++D IF K+C+GK Sbjct: 424 AWNLLNELIGVEYEDEIIDNIFRKYCLGK 452 >gi|229496106|ref|ZP_04389828.1| tRNA modification GTPase TrmE [Porphyromonas endodontalis ATCC 35406] gi|229317002|gb|EEN82913.1| tRNA modification GTPase TrmE [Porphyromonas endodontalis ATCC 35406] Length = 468 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 160/472 (33%), Positives = 250/472 (52%), Gaps = 46/472 (9%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPS---CFQVCEFICKKKKPFPRKASLRYFFGL---D 57 ++ TI A+++G I++IR+SG C Q F + PR A ++G Sbjct: 8 DESTICALASGR-GGGIALIRVSGSQALPCLQQI-FSPHRDSWTPRHA----YYGTISRS 61 Query: 58 GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 G ILD+ ++ + +P S+TGED E H +V +L L R A PGE++ R+ Sbjct: 62 GEILDEVVVTYYQAPNSYTGEDLVEISCHASPYIVQTLLRWLVA-EGCRPAQPGEYTLRS 120 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 + NG+ DL EAE++AD+I++E+ Q RL+++ + G+LS G D+L S +E +LD Sbjct: 121 YLNGRRDLAEAEAVADVIAAESAAQHRLALQQLRGKLSQELGSLHDQLLEFASLLELELD 180 Query: 178 FSEEEDVQNFSSKEVLNDI-LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 FSEE DV+ F+ +E L + ++ I I G+ ++ G I ILG N GKS+L Sbjct: 181 FSEE-DVE-FADREALRSLATAIQQRIGQLIGSFTQGKHLKEGIPIAILGQPNTGKSTLL 238 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 NAL +D AIV+DI GTTRD + L ++G L +I DTAG+R T D +E+ GIKR + Sbjct: 239 NALLGEDRAIVSDIEGTTRDSIEEKLVIKGVLFRIIDTAGLRHTQDPIEQLGIKRALQKA 298 Query: 297 ENADLILLL-------KE-INSKKE--ISFP----------KNIDFIFIGTKSDLYSTYT 336 E+A L L+L KE +NS E S P ID + + L + + Sbjct: 299 EDAALSLILLDALRVQKEGVNSSLEQLASLPLSPENRLVLLNKIDLLTEEEREALAAEVS 358 Query: 337 EEYDH---LISSFTGEG---LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL 390 + L+S+ G G L+EL+ K I ++ ++ +++RHL+ L + +L Sbjct: 359 AAFRQTPVLLSAKEGRGLEELQELLLKKSGIQEGNTEE--ETLITNERHLHALEKAATHL 416 Query: 391 EMA-SLNEKDCGLDIIAENLRLASVSLGKITG-CVDVEQLLDIIFSKFCIGK 440 + + +D I +LR +LG+ITG + E++L IF+ FCIGK Sbjct: 417 RTVLEALDANVSVDFITLDLRCVLEALGEITGHTITGEEVLHSIFAHFCIGK 468 >gi|212704371|ref|ZP_03312499.1| hypothetical protein DESPIG_02426 [Desulfovibrio piger ATCC 29098] gi|212672196|gb|EEB32679.1| hypothetical protein DESPIG_02426 [Desulfovibrio piger ATCC 29098] Length = 465 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 149/472 (31%), Positives = 239/472 (50%), Gaps = 47/472 (9%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKAS------LRYFFGLD--G 58 TI A++T I I+R+SGP Q E + + P K S L LD G Sbjct: 3 TIAAIATAPGAGGIGIVRISGP---QSREILSRMFSPASAKFSGFRPWVLHRGRALDHEG 59 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 LD L + P P +FTGED AE H HGG +V ILE ++ R A GEFSRRAF Sbjct: 60 APLDDVLAVFMPGPRTFTGEDVAEIHCHGGPFIVQAILETALRL-GARAAERGEFSRRAF 118 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG++DL +AE++A+LI++ + R S+ + G L +L +R + +DF Sbjct: 119 VNGRMDLSQAEAVAELIAAPSREALRYSLNRLDGLLGRKVTALRQRLEELRVQMSLAVDF 178 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 +EE V+ + + + + + ++ + ++++ G +V+ G NAGKSSL NA Sbjct: 179 PDEE-VECLAPEAFAAVVEEVAAAVRGLLTGQRRAQVMQQGAVVVLAGAVNAGKSSLLNA 237 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L ++ A+VTDIPGTTRD L L+G V+++DTAG+RETD+ VE+ G+ + +V Sbjct: 238 LLGRNRALVTDIPGTTRDFLEESCQLDGLPVRLTDTAGLRETDESVEEMGVALSRQKVRQ 297 Query: 299 ADLILLLKEINS----------------KKEISFPKNIDFIFIGTKSDLY--STYTEEYD 340 AD ILLL + ++ + +I + + K DL + + + Sbjct: 298 ADAILLLVDGGRLGPAGAAADICPDEAVREVLEQAGDIPVLLVWNKVDLAEPAVWPPAWG 357 Query: 341 H-----LISSFTGEGLEELINKIKSILSNKFKKLPFS--IPSHKRHLYHLSQTVRYLE-- 391 H IS+ TG ++ L +++++L + P S + + R L + + L+ Sbjct: 358 HGRPCVRISASTGHNVDTLARRLRALLLDDGSHTPPSDGLAPNARQSLVLERALHELDAL 417 Query: 392 ---MASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +A+ + DC + L A+ LG++TG E++L+ +FS FCIGK Sbjct: 418 LADIAAGSPYDC----CSVRLDAAAALLGEVTGLDSPEEVLNRVFSSFCIGK 465 >gi|291288764|ref|YP_003505580.1| tRNA modification GTPase TrmE [Denitrovibrio acetiphilus DSM 12809] gi|290885924|gb|ADD69624.1| tRNA modification GTPase TrmE [Denitrovibrio acetiphilus DSM 12809] Length = 437 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 142/446 (31%), Positives = 230/446 (51%), Gaps = 21/446 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 ETI+A + + SA+ ++R+SG V + + R +Y G + D L Sbjct: 2 ETIYAALSPLITSAVIVVRISGSDALDVLSLLGAEGLEDKRVIHTKY----SGSVNDDVL 57 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + F P S+TGED E HG +V+ + K+ R A PGEF++RAF NGKIDL Sbjct: 58 VTYFKGPASYTGEDVVEISFHGNPLIVSSAFADFEKL-GFRGAQPGEFTKRAFINGKIDL 116 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AES+A+LI S+T+ S + G + D +I + IEA +DF EE D++ Sbjct: 117 TQAESVAELIDSKTKRGIDYSYSQLKGSMRKEVEGIRDIFINILTVIEAHIDFPEE-DIE 175 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 V N++ L++ +S + +++R+GY+I I+G N GKSSL N L K+D A Sbjct: 176 EAHENIVFNNLQTLRDSVSEILRSYTTHKVLRDGYRIAIVGKPNTGKSSLMNYLLKEDRA 235 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IV+++ GTTRD + L+G V + DTAG+R TDD +EK GI++T + +ADL+++L Sbjct: 236 IVSEVAGTTRDYIESSFVLDGVPVSLVDTAGMRFTDDAIEKAGIEKTVSLINDADLVVVL 295 Query: 306 KE----INSKKE--ISFPKNIDFIFIGTKSDLYSTYT-EEYDHLISSFTGEGLEELINKI 358 + +N + E +S + +D + + K D + + D +S + ++ +N Sbjct: 296 LDNSLPLNHEDENVLSITEGMDRLLVVNKCDSQNILDLDNVDCHVSVKHDKNMKVFLNMC 355 Query: 359 KSILS----NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASV 414 + +S + F K S+ +R ++ Q + +E + + DI L + Sbjct: 356 AAKVSLSDADVFGK---SVMVTERQKHYFDQILTSVEKL-IEYSEIDFDIFEYELNSSLR 411 Query: 415 SLGKITGCVDVEQLLDIIFSKFCIGK 440 L +ITG E +L IF FCIGK Sbjct: 412 LLSEITGLSYTEDVLSNIFDNFCIGK 437 >gi|213609504|ref|ZP_03369330.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 268 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 106/271 (39%), Positives = 163/271 (60%), Gaps = 3/271 (1%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+H +TI A +T + I+R+SG V + + K P PR A F +DG Sbjct: 1 MSH-NDTIVAQATPPGRGGVGILRISGLKARDVAQEVLGKL-PKPRYADYLPFKDVDGSA 58 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG +++ +L+ + +P +R+A PGEFS RAF N Sbjct: 59 LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + +E R ++ + G S+ ++ LTH+R ++EA +DF + Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE + S ++ + + D+ + ++ + G ++R G K+VI G NAGKSSL NALA Sbjct: 179 EE-IDFLSDGKIEAQLNGVIADLDAVRTEARQGSLLREGMKVVIAGRPNAGKSSLLNALA 237 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 ++ AIVTDI GTTRDVL + ++G + I Sbjct: 238 GREAAIVTDIAGTTRDVLREHIHIDGMPLHI 268 >gi|302672308|ref|YP_003832268.1| tRNA modification GTPase TrmE [Butyrivibrio proteoclasticus B316] gi|302396781|gb|ADL35686.1| tRNA modification GTPase TrmE [Butyrivibrio proteoclasticus B316] Length = 478 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 154/478 (32%), Positives = 247/478 (51%), Gaps = 45/478 (9%) Query: 2 NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFI----CKKKKPFPRKA-SLRYFFGL 56 N +TI A++T + I IIR+SGP ++C+ I K+ KA ++ Y + + Sbjct: 7 NFNGDTICAIATAMSDAGIGIIRVSGPMALEICDKIYVSAAKEHNLLKHKANTITYGYIV 66 Query: 57 DG------RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANP 110 D +I+D+ ++ +P S+T ED E + HGG+ ++N IL+ L K R+A P Sbjct: 67 DNSLPEENQIIDEVMISFMKAPHSYTREDVIEINSHGGMLIMNQILQLLLK-NGCRIAEP 125 Query: 111 GEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRS 170 GEF++RAF NG+IDL +AE++ D+IS++ S + G++ +K+ + + Sbjct: 126 GEFTKRAFLNGRIDLTKAEAIMDVISAQNNFALEASRNQLQGKIYKKIKSLREKIIYQMA 185 Query: 171 FIEADLDFSEEEDVQNFSSKE--VLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHS 228 FIE+ LD E D+ FS K +++DI+ ++I I G+I ++G K VI+G Sbjct: 186 FIESALDDPENYDLTGFSDKLDIIISDIM---SEIGHMIDTADEGKIRKDGIKTVIVGKP 242 Query: 229 NAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEG 288 NAGKSSL N L + AIVTDI GTTRD++ + L ++ + DTAGIR T+D++EK G Sbjct: 243 NAGKSSLLNTLTGDERAIVTDIAGTTRDIIEETVRLGDIVLHLIDTAGIRNTEDVIEKIG 302 Query: 289 IKRTFLEVENADLILLLKEINS------KKEISFPKNIDFIFIGTKSDLYS--------- 333 + + ++ A+L+L + + + I KN I + K DL Sbjct: 303 VDKAKSMIQEAELVLYILDSTAEIDDEDNDIIDLCKNKKTIVLLNKDDLSDEIKITDDIV 362 Query: 334 ----TYTEEYDHLI---SSFTGEGLEELINKIKSILSNK--FKKLPFSIPSHKRHLYHLS 384 + T Y+ I S G G+++L + + N K I ++ RH L Sbjct: 363 RMRFSDTSNYNLPIIKTSMLKGNGIDDLKKAVSDLFLNGEIVPKQELYI-TNLRHKALLQ 421 Query: 385 QTVRYLEMASLNEKDCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + L++ N + GL D +L A SLG+I G + L++ IFSKFC+GK Sbjct: 422 DSFDSLQLVR-NSIEQGLSEDFYTVDLNDAYASLGEIIGEEVGDDLVEEIFSKFCMGK 478 >gi|149280420|ref|ZP_01886540.1| tRNA modification GTPase TrmE [Pedobacter sp. BAL39] gi|149228834|gb|EDM34233.1| tRNA modification GTPase TrmE [Pedobacter sp. BAL39] Length = 456 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 159/460 (34%), Positives = 244/460 (53%), Gaps = 31/460 (6%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL--DG-RIL 61 +TI A+ST AI +IRLSG + I K ++ S FGL DG ++ Sbjct: 4 NDTIVALSTPPGAGAIGVIRLSGKDAITITNAIFSGKDLL-KQDSHTLHFGLIKDGDTVI 62 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121 D+ ++ +F +P+S+T E+ E HG ++ I+ L + A PGEF+ RAF NG Sbjct: 63 DEVVVSLFVAPKSYTKENVVEISCHGSNYIIQQIISLLIR-KGASAAKPGEFTLRAFLNG 121 Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181 +DL +AE++ADLISS+++ ++M + G S+ ++L H S IE +LDFSEE Sbjct: 122 SLDLSQAEAVADLISSDSQAAHNVAMNQLRGGFSNELNVLREQLIHFASMIELELDFSEE 181 Query: 182 EDVQNFSSKEVLNDILFLKNDIS----SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 DV+ F++++ L D++ N I+ I +LG +I+ G VI G NAGKS+L N Sbjct: 182 -DVE-FANRDQLQDLI---NKITVVLNKLIRSFELGNVIKEGINTVIAGRPNAGKSTLLN 236 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV- 296 AL +D AIV+DI GTTRD + L++ G ++ DTAGIRE D +E G+++T ++ Sbjct: 237 ALLNEDRAIVSDIAGTTRDTIEELLNINGINFRLIDTAGIREATDTIEAIGVEKTMQKIN 296 Query: 297 ENADLILLLKEIN-----SKKEIS--FPKNIDFIFIGTKSDLYSTYTEEYDHL------- 342 ++A L+ L +N K +I+ + FI + K DL S + L Sbjct: 297 QSAVLVYLFDVVNLTIDQIKDDIASLHKPGLTFIAVANKIDLSSEEVLKSLDLPSDVHFI 356 Query: 343 -ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDC 400 IS+ E +EEL + ++ ++ RH+ L +T L S E Sbjct: 357 AISAKENEKVEELKQLVYDAAVGDQLSANHTMVTNIRHVEALQRTQDALRSVSNGLENPV 416 Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D +A +++ A LG+ITG V + LL+ IFSKFCIGK Sbjct: 417 TSDFLAMDIKQALHYLGEITGQVTTDDLLENIFSKFCIGK 456 >gi|212692016|ref|ZP_03300144.1| hypothetical protein BACDOR_01511 [Bacteroides dorei DSM 17855] gi|212665408|gb|EEB25980.1| hypothetical protein BACDOR_01511 [Bacteroides dorei DSM 17855] Length = 500 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 159/506 (31%), Positives = 255/506 (50%), Gaps = 81/506 (16%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFG------- 55 ++TI A++T A AI IIR+SGP ++ F KP +A FG Sbjct: 6 QDTICAIAT-AQGGAIGIIRVSGPKAIEITSRIFTPATGKPLTERAPYTLTFGKICSPKR 64 Query: 56 --------------------LDGR---------ILDKGLLIVFPSPESFTGEDSAEFHVH 86 L + ++D+ L+ +F +P S+TGEDS E H Sbjct: 65 KINNTLFQKTSEIPQEKSETLQKKESIIPSAEEVIDEVLISLFRAPHSYTGEDSTEIMCH 124 Query: 87 GGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLS 146 G ++ +++ L R A PGE+++RAF NGK+DL +AE++ADLI+S + RL+ Sbjct: 125 GSSYILQQVIQ-LLIYNGCRAALPGEYTQRAFLNGKMDLSQAEAVADLIASSSAATHRLA 183 Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206 M M G S ++L H S +E +LDFS+ E+++ F++++ L+ + + + Sbjct: 184 MSQMRGGFSKELSNLRNQLLHFTSLMELELDFSDHEELE-FANRDELSSLATHIEQVIAQ 242 Query: 207 ISQG-KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE 265 ++ +G I+NG + I+G +NAGKS+L NAL ++ AIV+DI GTTRDV+ ++L+ Sbjct: 243 LAHSFSVGNAIKNGIPVAIIGETNAGKSTLLNALLNEEKAIVSDIHGTTRDVIEDTINLQ 302 Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS----------KKEIS 315 G + DTAGIR+T+D +E GI+RTF +++ A +IL + I+S K EI Sbjct: 303 GVTFRFIDTAGIRQTNDTIENLGIERTFQKMDQAYVILWM--IDSTDAQRRFEELKAEI- 359 Query: 316 FP--KNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIK-----SILSNKFKK 368 P + I + KSDL +E L + F +E+L K +IL K + Sbjct: 360 LPHCEGKKMIILFNKSDLLLAIQKE--ELSAIFADMKVEKLFISAKKRENITILEKKLVQ 417 Query: 369 LPFSIPSHKR------HLYHLSQTVRYLEMASLNEKDCGL------DIIAENLRLASVSL 416 ++P + ++ H R L+ S++ GL D+++E+LR L Sbjct: 418 AA-ALPEINQNDIIITNVRHYEALTRALD--SIHRVQEGLQLGLSGDLVSEDLRQCIHEL 474 Query: 417 GKIT--GCVDVEQLLDIIFSKFCIGK 440 +I G + E+ L IF FCIGK Sbjct: 475 SEIVAEGGITSEETLQNIFQNFCIGK 500 >gi|294660633|ref|NP_853501.2| tRNA modification GTPase MnmE [Mycoplasma gallisepticum str. R(low)] gi|298286914|sp|Q7NAD9|MNME_MYCGA RecName: Full=tRNA modification GTPase mnmE gi|284812296|gb|AAP57069.2| tRNA modification GTPase MnmE [Mycoplasma gallisepticum str. R(low)] gi|284931001|gb|ADC30940.1| tRNA modification GTPase MnmE [Mycoplasma gallisepticum str. R(high)] Length = 453 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 150/452 (33%), Positives = 246/452 (54%), Gaps = 25/452 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLDGRILDK 63 ETI+A++T SAI +IRLSGP F++ IC K+ K R + R + +I+D Sbjct: 10 ETIYALATAPYNSAIHVIRLSGPDAFEIINKICDKQITKEGYRIQNARIVD--NDQIIDD 67 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 LL+ F +P+SFTGEDS E + HGG+ V+N I+ L K LA GEFS+R++ N KI Sbjct: 68 VLLMKFVAPKSFTGEDSIEINCHGGLFVINKIMALLNKH-GAHLARRGEFSKRSYINKKI 126 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL +A ++ DLI ++ + S++ +SGE S ++ + +E +D+ E ED Sbjct: 127 DLNQATAIHDLIFAKNNLSHSASIKALSGEFSKDIKNIQQEIFRLIGLVEIAIDYPEYED 186 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 + ++E N + ++ + +++ + I G KI I+G NAGKSSL NAL + Sbjct: 187 EKKELTEEFKN-LTNIRQKLQRIVNKSLKLKQISEGIKIAIVGEPNAGKSSLLNALLNEQ 245 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 AIVT+IPGTTRD + + L L + + DTAGIR++ D +E+ GI ++F ++ +DL+ Sbjct: 246 KAIVTNIPGTTRDTVEGQIVLNDELIINLIDTAGIRKSSDQIEQIGINKSFKTIDKSDLV 305 Query: 303 LLLKEINSKKEIS--------FPKNIDFIFIGTKSDLY--STYTEEYDHLISSFTGEGLE 352 + L ++N + K F+ +G K D + T E IS+ + + Sbjct: 306 IYLIDLNKYQNYDKTNIYKYLINKKKQFVLVGNKVDEVDPTLNTGEIQIKISAKNND-IS 364 Query: 353 ELINKIK----SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAEN 408 +LI ++ +I +++ K+ SI + + +L QT Y LN+ + D++ ++ Sbjct: 365 DLIKYLEETSLAIFNDENKQ--DSIFQEEWQI-NLLQTALYNINLILNDPNQYHDLVIQH 421 Query: 409 LRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L A+ SL K+ + L+D IF FC+GK Sbjct: 422 LNEANNSLLKVLSEYEDYNLIDEIFKNFCLGK 453 >gi|42519903|ref|NP_965833.1| tRNA modification GTPase TrmE [Lactobacillus johnsonii NCC 533] gi|81832151|sp|Q74H94|MNME_LACJO RecName: Full=tRNA modification GTPase mnmE gi|41584193|gb|AAS09799.1| probable tRNA modification GTPase TrmE [Lactobacillus johnsonii NCC 533] Length = 461 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 148/460 (32%), Positives = 248/460 (53%), Gaps = 32/460 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLDGR---I 60 +TI A+ST ISI+RLSG + + K P ++ Y +D + + Sbjct: 9 DTIAAISTPIGEGGISIVRLSGEDAVAIANKLFKGADLTQVPSH-TIHYGHIVDPKTKDV 67 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+ ++ V +P++FT ED E + HGG+ V N IL+ L R+A+PGEF++RAF N Sbjct: 68 VDETMVSVLRAPKTFTREDMVEINCHGGMIVTNDILQ-LLLANGARMADPGEFTKRAFMN 126 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFIEADL 176 G+IDL +AES+ D++ ++T+ R+++M ++G ++ ++ + +D + H E ++ Sbjct: 127 GRIDLTQAESVMDIVRAKTDKSRQVAMTQLAGGLLDKIRTMRQELLDTMAHE----EVNI 182 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D+ E D+ + +S+E+ + I + + G+IIRNG I+G N GKSSL Sbjct: 183 DYPEY-DMDDLTSQEMKKKAEEVSKQIDQLLKTAQEGKIIRNGLATAIVGRPNVGKSSLL 241 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N L + D AIVTDI GTTRD L + ++G +K+ DTAGI T+D VEK G++R+ + Sbjct: 242 NYLTQDDKAIVTDIAGTTRDTLEEYVSVKGVPLKLIDTAGIHHTEDKVEKIGVERSKKAI 301 Query: 297 ENADLILLLKEINS------KKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEG 350 ADL+LLL + + K ++ N I I K DL + ++E I+ Sbjct: 302 AEADLVLLLLDASQDLTDEDKNLLNLTANKKRIIILNKQDLGTKISQEMIREITDNPIIV 361 Query: 351 LEELINKIKSILSNKFKKLPFS---------IPSHKRHLYHLSQTVRYLEMASLNEKDC- 400 L + + L N ++L FS + +++R L++ + LE D Sbjct: 362 TSILKQENMAALENAIEQLFFSGIENSQNQILVTNQRQAGLLAKAKQSLEDVVNGIDDAM 421 Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LD++ +L+ A +LG+ITG ++L+ +FS+FC+GK Sbjct: 422 PLDLVQIDLKNAWDTLGEITGESAPDELITQLFSQFCLGK 461 >gi|260495366|ref|ZP_05815493.1| tRNA modification GTPase TrmE [Fusobacterium sp. 3_1_33] gi|260197144|gb|EEW94664.1| tRNA modification GTPase TrmE [Fusobacterium sp. 3_1_33] Length = 455 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 148/459 (32%), Positives = 242/459 (52%), Gaps = 31/459 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK---KKKPFPRKASLRYFFGLDG-RIL 61 +TI A+ST ISI+R+SG + E I + KK + S+ Y +D I+ Sbjct: 4 DTIAAISTPRGEGGISIVRMSGQDSLNILEKIFRPKNKKASELKNYSINYGHIIDNEHIV 63 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121 D+ L+ + +P ++T ED E + HGG V +LE + K R+A GEF++RAF NG Sbjct: 64 DEVLVSIMKAPNTYTREDIVEINCHGGFLVTEKVLEVVLK-NGARIAEIGEFTKRAFLNG 122 Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181 +IDL +AE++ D+I +TE LS+ + G+L + + + I LD+ EE Sbjct: 123 RIDLTQAEAVIDVIHGKTEKSLSLSLNQLRGDLRDKITTIKKSVLDLAAHINVVLDYPEE 182 Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 + + + +++++ +I + G+II++G K I+G N GKSS+ N+L + Sbjct: 183 -GIDDPVPENLVDNLKKASAEIKDLVLSYDKGKIIKDGIKTAIIGKPNVGKSSILNSLLR 241 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 +D AIVT IPGTTRD++ +++ G + + DTAGIR TDDI+E G++++ + +ADL Sbjct: 242 EDRAIVTHIPGTTRDIIEEVININGIPLLLVDTAGIRNTDDIIENIGVEKSKELINSADL 301 Query: 302 ILLLKE---------------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF 346 IL + + IN+ K I ID I DL E IS+ Sbjct: 302 ILYVIDISREIDEEDFRIYDIINTDKVIGILNKID---IKKDIDLSKFSKIEKWIEISAL 358 Query: 347 TGEGLEELINKIKSILSNK-----FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401 + G++ L N+I + N+ +KL + HK L ++ + L + +K Sbjct: 359 SKIGIDNLENEIYKFIMNENVEDSSQKLVITNVRHKSALEKTNEAL--LNIIETIDKGFP 416 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++A +++ A SL ++TG + E LLD IFS FC+GK Sbjct: 417 MDLMAVDIKDALDSLSEVTGEISSEDLLDHIFSNFCVGK 455 >gi|238855502|ref|ZP_04645807.1| tRNA modification GTPase TrmE [Lactobacillus jensenii 269-3] gi|260665206|ref|ZP_05866055.1| tRNA modification GTPase TrmE [Lactobacillus jensenii SJ-7A-US] gi|282931528|ref|ZP_06337027.1| tRNA modification GTPase TrmE [Lactobacillus jensenii 208-1] gi|238831868|gb|EEQ24200.1| tRNA modification GTPase TrmE [Lactobacillus jensenii 269-3] gi|260560943|gb|EEX26918.1| tRNA modification GTPase TrmE [Lactobacillus jensenii SJ-7A-US] gi|281304335|gb|EFA96438.1| tRNA modification GTPase TrmE [Lactobacillus jensenii 208-1] Length = 460 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 150/464 (32%), Positives = 248/464 (53%), Gaps = 36/464 (7%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD---G 58 E +TI A+ST ISI+RLSG ++ + K K + AS +G +D Sbjct: 6 EFDTIAAISTPIGEGGISIVRLSGEDAVKIANKLFKGKN-LSKVASHTINYGHIVDPETS 64 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 ++D+ ++ V +P++FT ED E + HGGI V N IL+ L K R+A GEF++RAF Sbjct: 65 EVVDEVMVSVLLAPKTFTKEDMVEINCHGGIVVTNKILQLLLKH-GARMAEAGEFTKRAF 123 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFIEA 174 NG+IDL +AES+ D++ ++T+ R+++M + G ++ ++ + +D L +I E Sbjct: 124 VNGRIDLTQAESVMDIVRAKTDKARQVAMNQLEGGLLVKIRTMRQEILDTLANI----EV 179 Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234 ++D+ E D ++K++ + I+ + G+I+R+G I+G N GKSS Sbjct: 180 NIDYPEY-DADQVTAKQMQETSKSVIEKINRLLKTASEGKIMRSGLATAIVGRPNVGKSS 238 Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294 L N L + D AIVTD+ GTTRD L + ++G +K+ DTAGI T+D VEK G++R+ Sbjct: 239 LLNYLTQDDKAIVTDVAGTTRDTLEEYVSIKGVPLKLVDTAGIHHTEDKVEKIGVERSKK 298 Query: 295 EVENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEE-------YDH 341 +E ADL+LLL + +K I + K+ I + KSDL +E + Sbjct: 299 AIEQADLVLLLLNASEDLTPEDEKLIDYTKDKKRIVVLNKSDLGMKLNKEDLAKKTNAEI 358 Query: 342 LISSFTGE----GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLN 396 +++S E LEE I+K+ S + +++R L + L ++ Sbjct: 359 VVTSILKEENLDDLEEAISKL--FFSGIHNSNNDVLVTNQRQAGLLEKAKTQLTDVIDAV 416 Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + D +DI + A +LG+ITG ++L+ +FS+FC+GK Sbjct: 417 DNDVPVDIAQIDFTGAWDTLGEITGDSAPDELITQLFSQFCLGK 460 >gi|226490853|ref|NP_001149416.1| LOC100283042 [Zea mays] gi|195627080|gb|ACG35370.1| tRNA modification GTPase trmE [Zea mays] Length = 546 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 148/478 (30%), Positives = 241/478 (50%), Gaps = 54/478 (11%) Query: 7 TIFAVST--GALPSAISIIRLSGPSCFQVCEFICKK------KKPF-PRKASLRYFFGLD 57 TI A+ T G P+A+ I+R+SGP V + + + P+ PR + Y LD Sbjct: 79 TIAAIVTSLGGGPAAVGIVRISGPDAVAVADRVFRPAGTRRASTPWQPRSHFVEYGLALD 138 Query: 58 --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 G ++D+ L++ SP S+T ED E HG + +L + RLA+PGEF+ Sbjct: 139 ADGSVIDEVLVVPMLSPRSYTREDVVELQCHGNDLCLRRLLRACLEA-GARLADPGEFTL 197 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG++DL +AE+++ LIS+++ ++ G+ G S+L + + + IEA Sbjct: 198 RAFLNGRLDLAQAENVSRLISAKSAAAADSALAGIQGGFSTLVKSLRSRCIELLTEIEAR 257 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 LDF E+++ +++ I ++ ++ + +++++G +I I+G N GKSSL Sbjct: 258 LDF--EDEMPPLDPVMLVSKINCMRKEVQDALDTSNYDKLLQSGLQIAIIGRPNVGKSSL 315 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 NA +K + AIVT+I GTTRDV+ ++ + G V + DTAGIRETDD+VEK G+KR+ Sbjct: 316 LNAWSKSERAIVTEIAGTTRDVVEANVSIHGVPVTLLDTAGIRETDDVVEKIGVKRSEAA 375 Query: 296 VENADLILL--------------LKEINSKKEISFPKNIDFIFIGTKSDLYS-TYTEEYD 340 ADLI++ L E S S + + + K D E++ Sbjct: 376 AMGADLIVMAISAVDGWTDDDTKLMEHVSVNRKSSGSAVPMVLVINKVDCAPFVPGEQFK 435 Query: 341 HLISSF---------TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL----YHLSQTV 387 F TG+G+ +L + + + + +PS R Q + Sbjct: 436 QFSGLFRKHVQTCAVTGKGISDLESAVIEVRGIEH------VPSEGRRWTVNQRQFEQLL 489 Query: 388 RYLEM-----ASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 R E +S+NE+ +D +LR A+++L I+G E++L IFSKFCIGK Sbjct: 490 RTKEAFARLESSINEQ-LPMDFWTVDLREAALALATISGEDISEEVLSSIFSKFCIGK 546 >gi|302340304|ref|YP_003805510.1| tRNA modification GTPase TrmE [Spirochaeta smaragdinae DSM 11293] gi|301637489|gb|ADK82916.1| tRNA modification GTPase TrmE [Spirochaeta smaragdinae DSM 11293] Length = 456 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 149/456 (32%), Positives = 239/456 (52%), Gaps = 34/456 (7%) Query: 8 IFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF--PRKASLRYFFGLD--GRILDK 63 I A++T SAI+++R SG C + + + SL Y LD G +++ Sbjct: 12 IAALATPWGRSAIAVVRTSGEGCLDLLARTFSRPAALSGAKSHSLTYGHMLDASGLPIEQ 71 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 +L VF +P +TGE+S E + HG + + +L L ++ A PGEF+ RAF NGKI Sbjct: 72 VVLGVFHAPRGYTGEESVEIYTHGSPSGIQRLLSRLYEV-GFSEAAPGEFTLRAFLNGKI 130 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL EAE++A++I +++ ++M+ +SG L ++ + + +E LD+ EEE Sbjct: 131 DLTEAEAVAEIIDAKSSAAHAMAMDRLSGSLFRSIDALKKRIVEVLASVEVLLDYPEEEL 190 Query: 184 VQ----NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 + +F+ L+++L +S+ +G+L R G K+ I G +NAGKSSLFN Sbjct: 191 LDAPEPDFAP---LSEVLHSVEALSATFQEGRL---YREGAKVAIAGRTNAGKSSLFNLF 244 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 K+D +IV+DI GTTRD + + G V + DTAG+R+ VE EGI+R+ V+ A Sbjct: 245 LKEDRSIVSDIHGTTRDYIEAWTTIAGIPVCLYDTAGLRDAGHPVEVEGIRRSGKVVDAA 304 Query: 300 DLILLLKEINS----------KKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGE 349 DL+L L + + + S +IF+ T+SDL ++ +S+ TG+ Sbjct: 305 DLVLYLIDGTTGPSPDEFSLLADQTSAEGQGRYIFVMTRSDLGCQVWDDGVVAVSAVTGQ 364 Query: 350 GLEELINKIKSILSNKFKKLPFSIP-----SHKRHLYHLSQTVRYLEMASLNEKDCGLDI 404 GL+ L K+ LS K L P KR L S ++ + + + + D Sbjct: 365 GLDRLQKKMAKCLSAK-APLTSGEPVVDSLRQKRLLDRCSSALQAV-LEGVGSRS--WDE 420 Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +A +L+ A +LG+ITG V +L+ IFS FC+GK Sbjct: 421 LAMDLKDAVDALGEITGEVTSADILESIFSGFCLGK 456 >gi|237708959|ref|ZP_04539440.1| tRNA modification GTPase TrmE [Bacteroides sp. 9_1_42FAA] gi|265756268|ref|ZP_06090597.1| tRNA modification GTPase TrmE [Bacteroides sp. 3_1_33FAA] gi|229457021|gb|EEO62742.1| tRNA modification GTPase TrmE [Bacteroides sp. 9_1_42FAA] gi|263233859|gb|EEZ19468.1| tRNA modification GTPase TrmE [Bacteroides sp. 3_1_33FAA] Length = 498 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 157/504 (31%), Positives = 253/504 (50%), Gaps = 77/504 (15%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFG------- 55 ++TI A++T A AI IIR+SGP ++ F KP +A FG Sbjct: 4 QDTICAIAT-AQGGAIGIIRVSGPKAIEITSRIFTPATGKPLTERAPYTLTFGKICSPKR 62 Query: 56 --------------------LDGR---------ILDKGLLIVFPSPESFTGEDSAEFHVH 86 L + ++D+ L+ +F +P S+TGEDS E H Sbjct: 63 KINNTLFQKTSEIPQEKSETLQKKESIIPSAEEVIDEVLISLFRAPHSYTGEDSTEIMCH 122 Query: 87 GGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLS 146 G ++ +++ L R A PGE+++RAF NGK+DL +AE++ADLI+S + RL+ Sbjct: 123 GSSYILQQVIQ-LLIYNGCRAALPGEYTQRAFLNGKMDLSQAEAVADLIASSSAATHRLA 181 Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206 M M G S ++L H S +E +LDFS+ E+++ F++++ L+ + + + Sbjct: 182 MSQMRGGFSKELSNLRNQLLHFTSLMELELDFSDHEELE-FANRDELSSLATHIEQVIAQ 240 Query: 207 ISQG-KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE 265 ++ +G I+NG + I+G +NAGKS+L NAL ++ AIV+DI GTTRDV+ ++L+ Sbjct: 241 LAHSFSVGNAIKNGIPVAIIGETNAGKSTLLNALLNEEKAIVSDIHGTTRDVIEDTINLQ 300 Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS--------KKEISFP 317 G + DTAGIR+T+D +E GI+RTF +++ A +IL + + K EI P Sbjct: 301 GVTFRFIDTAGIRQTNDTIENLGIERTFQKMDQAYVILWMIDSTDAQRRFEELKAEI-LP 359 Query: 318 --KNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIK-----SILSNKFKKLP 370 + I + KSDL +E L + F +E+L K +IL K + Sbjct: 360 HCEGKKMIILFNKSDLLLAIQKE--ELSAIFADMKVEKLFISAKKRENITILEKKLVQAA 417 Query: 371 FSIPSHKR------HLYHLSQTVRYLEMASLNEKDCGL------DIIAENLRLASVSLGK 418 ++P + ++ H R L+ S++ GL D+++E+LR L + Sbjct: 418 -ALPEINQNDIIITNVRHYEALTRALD--SIHRVQEGLQLGLSGDLVSEDLRQCIHELSE 474 Query: 419 IT--GCVDVEQLLDIIFSKFCIGK 440 I G + E+ L IF FCIGK Sbjct: 475 IVAEGGITSEETLQNIFQNFCIGK 498 >gi|150006140|ref|YP_001300884.1| tRNA modification GTPase TrmE [Bacteroides vulgatus ATCC 8482] gi|254883528|ref|ZP_05256238.1| tRNA modification GTPase TrmE [Bacteroides sp. 4_3_47FAA] gi|205829059|sp|A6L6E8|MNME_BACV8 RecName: Full=tRNA modification GTPase mnmE gi|149934564|gb|ABR41262.1| putative GTPase, ThdF family [Bacteroides vulgatus ATCC 8482] gi|254836321|gb|EET16630.1| tRNA modification GTPase TrmE [Bacteroides sp. 4_3_47FAA] Length = 500 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 155/503 (30%), Positives = 250/503 (49%), Gaps = 75/503 (14%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL------ 56 ++TI A++T A AI IIR+SGP ++ F KP +A FG Sbjct: 6 QDTICAIAT-AQGGAIGIIRVSGPKAIEITSRIFTPATGKPLTERAPYTLTFGKICSPKR 64 Query: 57 ------------------------------DGRILDKGLLIVFPSPESFTGEDSAEFHVH 86 ++D+ L+ +F +P S+TGEDS E H Sbjct: 65 KINNTLFQQTSEIPQEKSETLQKTSSITSSAEEVIDEVLISLFRAPHSYTGEDSTEIMCH 124 Query: 87 GGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLS 146 G ++ +++ L R A PGE+++RAF NGK+DL +AE++ADLI+S + RL+ Sbjct: 125 GSSYILQQVIQ-LLIYNGCRAALPGEYTQRAFLNGKMDLSQAEAVADLIASSSASTHRLA 183 Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206 M M G S ++L H S +E +LDFS+ E+++ F++++ L+ + + + Sbjct: 184 MSQMRGGFSKELSNLRNQLLHFTSLMELELDFSDHEELE-FANRDELSSLATHIEQVIAR 242 Query: 207 ISQG-KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE 265 ++ +G I+NG + I+G +NAGKS+L NAL ++ AIV+DI GTTRDV+ ++L+ Sbjct: 243 LAHSFSVGNAIKNGIPVAIIGETNAGKSTLLNALLNEEKAIVSDIHGTTRDVIEDTINLQ 302 Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL-------KEINSKKEISFP- 317 G + DTAGIR+T+D +E GI+RTF +++ A +IL + + K P Sbjct: 303 GVTFRFIDTAGIRQTNDTIENLGIERTFQKMDQAYVILWMIDSTDAQRRFEELKADILPH 362 Query: 318 -KNIDFIFIGTKSD-LYSTYTEEYDHLISSFTGEGLEELINKIK----SILSNKFKKLPF 371 + I + KSD L +T EE + + E L I+ K +IL K + Sbjct: 363 CEGKKMIILFNKSDLLLATQKEELSAIFADMKVEKL--FISAKKRENITILEKKLVQAA- 419 Query: 372 SIPSHKR------HLYHLSQTVRYLEMASLNEKDCGL------DIIAENLRLASVSLGKI 419 ++P + ++ H R L+ S++ GL D+++E+LR L +I Sbjct: 420 ALPEVNQNDIIITNVRHYEALTRALD--SIHRVQEGLQLELSGDLVSEDLRQCIHELSEI 477 Query: 420 T--GCVDVEQLLDIIFSKFCIGK 440 G + E+ L IF FCIGK Sbjct: 478 VAEGGITSEETLQNIFQNFCIGK 500 >gi|313665711|ref|YP_004047582.1| tRNA modification GTPase TrmE [Mycoplasma leachii PG50] gi|312949836|gb|ADR24432.1| tRNA modification GTPase TrmE [Mycoplasma leachii PG50] Length = 452 Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 136/449 (30%), Positives = 243/449 (54%), Gaps = 15/449 (3%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +T+ A +T AI++IR+SG F + + K KK ++ + ++D+ + Sbjct: 5 DTVVAPATNISTQAIALIRVSGSEAFLIVNKLIKDKKLEEKRGLFLRKLYFEDELIDEVV 64 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 L F +P SFTGE+ E HGGI N I+ L + R+A GEFS+R+F NGKIDL Sbjct: 65 LSCFVAPNSFTGENVVEIACHGGILNTNKIINILIQ-SGARMALRGEFSQRSFLNGKIDL 123 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 ++AE + +LI ++ ++ ++ + MSG + + D L I S I+ +D+ + +DV+ Sbjct: 124 IQAEGINNLIHAKNDLALKIGVANMSGSNNKAIIELKDNLLDIISRIQVSIDYPDYDDVE 183 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S +++ N + + + I+ + + K+ G K I+G +N GKSS+ NAL +D A Sbjct: 184 GSSIEDLTNLLEIINDQINKLLMRSKMAFKNSEGIKTAIVGQTNVGKSSILNALINEDKA 243 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL- 304 IVTDIPGTTRD++ ++LE + + DTAGIR+T D+VE GI ++ + ADL+L Sbjct: 244 IVTDIPGTTRDIVEGQINLENVSLNLIDTAGIRKTSDVVENLGILKSKNLINEADLVLFV 303 Query: 305 -----LKEINSKKEISFPKNIDFIFIGTKSDLYS-----TYTEEYDHLI-SSFTGEGLEE 353 + ++++++ KN +I I K++ S ++Y++++ +S +++ Sbjct: 304 VNKENINDLDNQEIFELLKNKTYILIVNKAEKLSKTEKQNLEKKYENIVFTSAINHNIDQ 363 Query: 354 LINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDIIAENLRL 411 L+ +I + L+ + K I + + Q L A S+ + +DI+ +L Sbjct: 364 LVLRINQMYLNEEINKNDELILIGLNQITLVEQIKNKLSTALSVIKSGMPIDIVNVDLYD 423 Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A L ++ G ++++D IF K+C+GK Sbjct: 424 AWNLLNELIGVEYEDEIIDNIFRKYCLGK 452 >gi|319641684|ref|ZP_07996367.1| tRNA modification GTPase mnmE [Bacteroides sp. 3_1_40A] gi|317386658|gb|EFV67554.1| tRNA modification GTPase mnmE [Bacteroides sp. 3_1_40A] Length = 498 Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 153/503 (30%), Positives = 250/503 (49%), Gaps = 75/503 (14%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL------ 56 ++TI A++T A AI IIR+SGP ++ F KP +A FG Sbjct: 4 QDTICAIAT-AQGGAIGIIRVSGPKAIEITSRIFTPATGKPLTERAPYTLTFGKICSPKR 62 Query: 57 ------------------------------DGRILDKGLLIVFPSPESFTGEDSAEFHVH 86 ++D+ L+ +F +P S+TGEDS E H Sbjct: 63 KINNTLFQQTSEIPQEKSETLQKTSSITSSAEEVIDEVLISLFRAPHSYTGEDSTEIMCH 122 Query: 87 GGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLS 146 G ++ +++ L R A PGE+++RAF NGK+DL +AE++ADLI+S + RL+ Sbjct: 123 GSSYILQQVIQ-LLIYNGCRAALPGEYTQRAFLNGKMDLSQAEAVADLIASSSASTHRLA 181 Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206 M M G S ++L H S +E +LDFS+ E+++ F++++ L+ + + + Sbjct: 182 MSQMRGGFSKELSNLRNQLLHFTSLMELELDFSDHEELE-FANRDELSSLATHIEQVIAR 240 Query: 207 ISQG-KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE 265 ++ +G I+NG + I+G +NAGKS+L NAL ++ AIV+DI GTTRDV+ ++L+ Sbjct: 241 LAHSFSVGNAIKNGIPVAIIGETNAGKSTLLNALLNEEKAIVSDIHGTTRDVIEDTINLQ 300 Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE---------ISF 316 G + DTAGIR+T+D +E GI+RTF +++ A +IL + + + + Sbjct: 301 GVTFRFIDTAGIRQTNDTIENLGIERTFQKMDQAYVILWMIDSTDAQRRFEELKADILPH 360 Query: 317 PKNIDFIFIGTKSD-LYSTYTEEYDHLISSFTGEGLEELINKIK----SILSNKFKKLPF 371 + I + KSD L +T EE + + E L I+ K +IL K + Sbjct: 361 CEGKKMIILFNKSDLLLATQKEELSAIFADMKVEKL--FISAKKRENITILEKKLVQAA- 417 Query: 372 SIPSHKR------HLYHLSQTVRYLEMASLNEKDCGL------DIIAENLRLASVSLGKI 419 ++P + ++ H R L+ S++ GL D+++E+LR L +I Sbjct: 418 ALPEVNQNDIIITNVRHYEALTRALD--SIHRVQEGLQLELSGDLVSEDLRQCIHELSEI 475 Query: 420 T--GCVDVEQLLDIIFSKFCIGK 440 G + E+ L IF FCIGK Sbjct: 476 VAEGGITSEETLQNIFQNFCIGK 498 >gi|294775319|ref|ZP_06740842.1| small GTP-binding protein domain protein [Bacteroides vulgatus PC510] gi|294450896|gb|EFG19373.1| small GTP-binding protein domain protein [Bacteroides vulgatus PC510] Length = 500 Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 155/503 (30%), Positives = 250/503 (49%), Gaps = 75/503 (14%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL------ 56 ++TI A++T A AI IIR+SGP ++ F KP +A FG Sbjct: 6 QDTICAIAT-AQGGAIGIIRVSGPKAIEITSRIFTPATGKPLTERAPYTLTFGKICSPKR 64 Query: 57 ------------------------------DGRILDKGLLIVFPSPESFTGEDSAEFHVH 86 ++D+ L+ +F +P S+TGEDS E H Sbjct: 65 KINNTLFQQTSEIPQEKSETLQKTSSITSSAEEVIDEVLISLFRAPHSYTGEDSTEIMCH 124 Query: 87 GGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLS 146 G ++ +++ L R A PGE+++RAF NGK+DL +AE++ADLI+S + RL+ Sbjct: 125 GSSYILQQVIQ-LLIYNGCRAALPGEYTQRAFLNGKMDLSQAEAVADLIASSSASTHRLA 183 Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206 M M G S ++L H S +E +LDFS+ E+++ F++++ L+ + + + Sbjct: 184 MSQMRGGFSKELSNLRNQLLHFTSLMELELDFSDHEELE-FANRDELSSLATHIEQVIAR 242 Query: 207 ISQG-KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE 265 ++ +G I+NG + I+G +NAGKS+L NAL ++ AIV+DI GTTRDV+ ++L+ Sbjct: 243 LAHSFSVGNAIKNGIPVAIIGETNAGKSTLLNALLNEEKAIVSDIHGTTRDVIEDTINLQ 302 Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL-------KEINSKKEISFP- 317 G + DTAGIR+T+D +E GI+RTF +++ A +IL + + K P Sbjct: 303 GVTFRFIDTAGIRQTNDTIENLGIERTFQKMDQAYVILWMIDSTDTQRRFEELKADILPH 362 Query: 318 -KNIDFIFIGTKSD-LYSTYTEEYDHLISSFTGEGLEELINKIK----SILSNKFKKLPF 371 + I + KSD L +T EE + + E L I+ K +IL K + Sbjct: 363 CEGKKMIILFNKSDLLLATQKEELSAIFADMKVEKL--FISAKKRENITILEKKLVQAA- 419 Query: 372 SIPSHKR------HLYHLSQTVRYLEMASLNEKDCGL------DIIAENLRLASVSLGKI 419 ++P + ++ H R L+ S++ GL D+++E+LR L +I Sbjct: 420 ALPEVNQNDIIITNVRHYEALTRALD--SIHRVQEGLQLELSGDLVSEDLRQCIHELSEI 477 Query: 420 T--GCVDVEQLLDIIFSKFCIGK 440 G + E+ L IF FCIGK Sbjct: 478 VAEGGITSEETLQNIFQNFCIGK 500 >gi|114568076|ref|YP_755230.1| GTPase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|122317083|sp|Q0ATU5|MNME_SYNWW RecName: Full=tRNA modification GTPase mnmE gi|114339011|gb|ABI69859.1| tRNA modification GTPase trmE [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 459 Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 143/467 (30%), Positives = 235/467 (50%), Gaps = 47/467 (10%) Query: 8 IFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-------SLRYFFGLDGRI 60 I A+ST I+I+RLSG + E I K + + + SL + I Sbjct: 6 IAAISTAPGEGGIAIVRLSGNDVIEKVERIFKPYRAGIKLSDKEGYSLSLGWLCDEKMEI 65 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+ LL + +P S+TGED E + HGG LE + +RLA PGEF+RRAF N Sbjct: 66 IDEVLLGLMRAPRSYTGEDVVEINCHGGTLPARRCLEAVM-WQGVRLAQPGEFTRRAFLN 124 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G++D+ +AE++ ++I ++TE L+++ ++G S D++ + + +EA LDF + Sbjct: 125 GRLDVSQAEAVIEVIRAKTERGMNLALKQLAGRNSQEINLLEDQMIEVNAMLEASLDFPD 184 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E ++S+ + + +KN I + G+ EI R G + I G N GKSSL NAL Sbjct: 185 EVGDLDYSAAQ--GKLQEVKNRIDKLLLAGERAEIYREGINVAICGKPNVGKSSLLNALL 242 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 +K+ AIVT IPGTTRD++ +++ G VK+ DTAGIR T+D+VE+ GI+R+ + AD Sbjct: 243 RKEKAIVTSIPGTTRDIIEDYINIRGIPVKLKDTAGIRSTEDLVERIGIERSQEVISEAD 302 Query: 301 LILLLKEINS------KKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEEL 354 L+L + ++ + +K + + I + K DL E + LE+L Sbjct: 303 LVLFILDVGTGIDQEDRKIYEKIEKKNKIVLVNKEDLEEKNISEAE----------LEQL 352 Query: 355 INKI---------------------KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA 393 + K++LS + + + + R L R++E + Sbjct: 353 FPGVKIVRGSIIEETGLEELEESIEKAVLSGQLQSDDMEVMINLRQKNALLTAKRHIEES 412 Query: 394 SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LD + ++ A +LG+I+G E++++ IF FCIGK Sbjct: 413 LAAMGKVSLDCLGVDIWGALEALGEISGKNLKEEVIERIFHDFCIGK 459 >gi|288928132|ref|ZP_06421979.1| tRNA modification GTPase TrmE [Prevotella sp. oral taxon 317 str. F0108] gi|288330966|gb|EFC69550.1| tRNA modification GTPase TrmE [Prevotella sp. oral taxon 317 str. F0108] Length = 460 Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 150/464 (32%), Positives = 245/464 (52%), Gaps = 35/464 (7%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPF----PRKASLRYFFGL 56 ++++TI A++T ++ A+ +IR+SG + + F K K P+ + Sbjct: 6 NDRQTICALAT-SVGGALGVIRVSGNDAIDIVDHAFKAPKGKKLHALPPQTVQYGHIVDE 64 Query: 57 DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 + +D+ L+ F +P S+TGE+S E HG ++N +L+ L ++ R A PGEF++R Sbjct: 65 GEQTIDEVLVTCFRAPHSYTGENSVEISCHGSAYILNEVLKLLVRL-GCRQAQPGEFTQR 123 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NGK+DL +AE++ADLI++ +L++ + G S DKL HI S IE +L Sbjct: 124 AFLNGKMDLSQAEAVADLIAATNRASAQLALGQLRGHFSGELAALRDKLLHITSLIELEL 183 Query: 177 DFSEEEDVQNFSSKEVLNDILF-LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 DFS++ DV F+ ++ L + ++ I++ + + G I+ G + I+G +N GKS+L Sbjct: 184 DFSDQ-DV-TFADRQELQALAEEIRTKIATLATSFETGRAIKAGISVAIVGKTNVGKSTL 241 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N L K++ AIV+DI GTTRDV+ + + G + DTAGIR+T D +E GI+RT+ + Sbjct: 242 LNRLLKEERAIVSDIHGTTRDVIEDTIQINGINFRFIDTAGIRKTSDEIESLGIERTYQK 301 Query: 296 VENADLILL-------LKEINSKKEISFPKNIDFIFIGTKSDLYS------TYTEE--YD 340 + A ++L L EI + K + I + K+D S ++TE+ + Sbjct: 302 LTEAAIVLWVIDKAPTLSEIEEMNAHTRGKRL--IVVSNKTDAQSFAFPTFSWTEQPTFV 359 Query: 341 HLISSFTG--EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH-LSQTVRYLEMASLNE 397 + + F E LE I +I + + H L H L+ R LE +L Sbjct: 360 SVSAKFNTNIETLETCIYNAANIPEIHENDVVVTNVRHYEALSHALASIQRVLEGIAL-- 417 Query: 398 KDCGLDIIAENLRLASVSLGKIT-GCVDVEQLLDIIFSKFCIGK 440 D D++AE+LR L +IT G + ++L IF FCIGK Sbjct: 418 -DLSGDLLAEDLRQCLHFLAEITGGSITSNEVLGNIFRHFCIGK 460 >gi|224063199|ref|XP_002301037.1| predicted protein [Populus trichocarpa] gi|222842763|gb|EEE80310.1| predicted protein [Populus trichocarpa] Length = 483 Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 149/476 (31%), Positives = 239/476 (50%), Gaps = 48/476 (10%) Query: 7 TIFAV--STGALPSAISIIRLSGPSCFQVCEFICKKKKPF---------PRKASLRYFFG 55 TI A+ S G P+++ I+RLSGPS ++ + K + P + Y Sbjct: 14 TIAAIVTSVGGPPASVGIVRLSGPSAVEIAARVFKPMRKKKKKGFCVWKPTSHVVDYGVV 73 Query: 56 LD--GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEF 113 LD G ++D+ L + +P S+T ED E HG + +L + RLA PGEF Sbjct: 74 LDHQGNVVDEVLAVPMLAPRSYTREDVVELQCHGTEVCLRRVLRACIEA-GARLAEPGEF 132 Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173 + RAF NG++DL +AE++ LISS++ ++ G+ G +SL + + + IE Sbjct: 133 TLRAFLNGRLDLSQAENVGKLISSKSVAAADAALAGIQGGFASLVKSLRTQCIELLTEIE 192 Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233 A LDF +E + +++ I + ++ + + +++++G +I I+G N GKS Sbjct: 193 ARLDFDDE--MPPLDLNLIMDKIHSMSENVENALKTANYDKLLQSGLQIAIVGRPNVGKS 250 Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293 SL NA +K + AIVT+I GTTRD++ + + G V + DTAGIR TDD+VEK G++R+ Sbjct: 251 SLLNAWSKSERAIVTEIAGTTRDIVEASITVGGIPVILLDTAGIRVTDDVVEKIGVERSE 310 Query: 294 LEVENADLIL---------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEE 338 AD+I+ LL I SKK+ S I + K D + E Sbjct: 311 AVALGADVIVMTVSALDGWTPEDTELLNRIVSKKK-SVGSFTPMILVVNKIDCSPSLCSE 369 Query: 339 Y---------DHLIS-SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388 + H+ + + TG+G+++L I I+ K+P + Q VR Sbjct: 370 WVDRGGGSFSKHVFTCAITGQGIQDLEMAISEIVG--LNKIPAGGLKWTVNHRQCEQLVR 427 Query: 389 YLE----MASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E + S E++ LD +LR A+++LG+I+G E++L IF KFCIGK Sbjct: 428 MKEALVRLKSSIEEEMPLDFWTIDLRDAALALGQISGENISEEILSNIFGKFCIGK 483 >gi|160946598|ref|ZP_02093801.1| hypothetical protein PEPMIC_00556 [Parvimonas micra ATCC 33270] gi|158446982|gb|EDP23977.1| hypothetical protein PEPMIC_00556 [Parvimonas micra ATCC 33270] Length = 468 Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 149/460 (32%), Positives = 246/460 (53%), Gaps = 33/460 (7%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL---DGRIL 61 TI A++T S I I+RLSG + + F KK +K+ +G ++ Sbjct: 16 TIVAIATATGESGIGIVRLSGEKSIDIVKNFFKPHDKKEIDKKSDRMMKYGHIYDKDELI 75 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121 D+ ++ +P ++T E+ E HGGI + +L L LA GEF++RAF NG Sbjct: 76 DEVMVCFMFAPHTYTRENVVEIFTHGGIVCLKRVLN-LCLENGADLAEKGEFTKRAFLNG 134 Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181 ++DL +AE + DLI ++TE + ++ + G LS ++ ++L I SF+E ++F+E Sbjct: 135 RLDLSQAEGVIDLIKAKTEFSHKSAINQLEGHLSKKIKEFREELLDILSFVEYSINFTE- 193 Query: 182 EDVQNFSSKEVLNDILFLKND-----ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D+Q +E+ D + LK + + + + G+I+++G + I+G N GKSSL Sbjct: 194 -DMQ----EELPFDNVILKTEKLMAEMEELLGESNKGKILKDGINVSIIGKPNVGKSSLL 248 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N + +++ AIVTDI GTTRD++ D++L G + I+DTAGIR+T D+VEK G++++ Sbjct: 249 NRILRQERAIVTDIAGTTRDLIKEDIELSGIKLNINDTAGIRDTADVVEKIGVQKSIEAS 308 Query: 297 ENADLILLL----KEINSKKE--ISFPKNIDFIFIGTKSDLYSTYTEE-------YDHL- 342 EN+DL L+L +E++ + E I+ I I K DL EE ++ + Sbjct: 309 ENSDLNLVLFDISRELDEEDEKIINLANTTKSIGILNKVDLDKKLNEEKLKEKVNFELIE 368 Query: 343 ISSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-C 400 IS+ EG+ +L I + K + ++ ++ RH L ++ YL+ + K+ Sbjct: 369 ISALKNEGISKLEQAIIDMFFDGKIEIKDKALITNVRHENSLKSSLEYLKSFYADLKNMV 428 Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D +LR A LG+I G E +LD IFS FCIGK Sbjct: 429 PIDCCEVDLRRAYEVLGEIIGENISENILDNIFSNFCIGK 468 >gi|326804314|ref|YP_004322132.1| tRNA modification GTPase TrmE [Aerococcus urinae ACS-120-V-Col10a] gi|326650573|gb|AEA00756.1| tRNA modification GTPase TrmE [Aerococcus urinae ACS-120-V-Col10a] Length = 466 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 142/462 (30%), Positives = 254/462 (54%), Gaps = 33/462 (7%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK-KKPFPRKASLRYFFG--LDGRI-- 60 +TI A+ST AI I+RLSG + + + + K + S +G +D + Sbjct: 11 DTIAAISTAPGEGAIGIVRLSGDQALAIADTVYQMGTKQLANQDSHTIHYGHIVDPQSEQ 70 Query: 61 -LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 LD+ ++ V +P+++T ED E + HGG+ + IL+ L R+A PGEF++RAF Sbjct: 71 ELDEVMVTVLRAPKTYTREDIVEINCHGGMVATDRILQ-LVLREGARMAEPGEFTKRAFL 129 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF- 178 NG+IDL +AE++ D+I S+T+ +M+ + G+LS+ ++++ +E ++D+ Sbjct: 130 NGRIDLTQAEAVQDMIRSKTDRSMDQAMKQLDGKLSTKISTLRNRISDAMVQVEVNIDYP 189 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 EE+ + D + + ++ ++ K G+I+R+G + I+G N GKSSL N Sbjct: 190 EYEEEEMTLELLDQTADTI--QAELQRLLTTAKQGKILRDGIETAIIGRPNVGKSSLLNH 247 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L ++D AIVTDI GTTRD + ++L G +K+ DTAGIR+T+D+VEK G++R+ +E Sbjct: 248 LLREDKAIVTDIEGTTRDTIEEYVNLRGVPLKLVDTAGIRDTEDVVEKIGVERSRKAMEE 307 Query: 299 ADLILLL------KEINSKKEISFPKNIDFIFIGTKSDL--------YSTYTEEYDHLIS 344 ADL+LL+ + ++ ++ K+ + I + K+DL + Y ++ + + + Sbjct: 308 ADLVLLILNQSEPLQAMDRELLTMTKDSNRIILLNKTDLDPALSLDDLADYADKEEIIKT 367 Query: 345 SFT-GEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYL----EMASLNEK 398 S T +G+++L +I + S + + S+ RH+ L + + + E SL Sbjct: 368 SITQDQGVDDLEERISQLFFSGQTGDRDATYVSNTRHIDLLQKASQAIAEAKEAISLG-- 425 Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D+I + A LG+ITG ++L+ +FS+FC+GK Sbjct: 426 -TPVDLIQIDFNRAFEFLGEITGENAPDELITKLFSQFCLGK 466 >gi|206895094|ref|YP_002246517.1| tRNA modification GTPase TrmE [Coprothermobacter proteolyticus DSM 5265] gi|206737711|gb|ACI16789.1| tRNA modification GTPase TrmE [Coprothermobacter proteolyticus DSM 5265] Length = 431 Score = 194 bits (492), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 149/445 (33%), Positives = 233/445 (52%), Gaps = 25/445 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 E I A++T A+ +IR+SG + E K PR ASLRYF ++ D+ + Sbjct: 2 EPIVALATPWGVGALHVIRISGDASKNTVEAFLDKPLQKPRHASLRYFSS--EKVEDQVV 59 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 I + P S+TGE+ E HG A+ I+E L ++ A PGEF+ RAF NGK+DL Sbjct: 60 AIWYSEPHSYTGEEMVEIMCHGNPAIAELIIETLLDA-GMKPAQPGEFTFRAFLNGKMDL 118 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ DLI + + + + G+LS +K+ ++ +F++A +DF E DV+ Sbjct: 119 TQAEAVNDLILARSTELLKAGENTLKGKLSDRIASLRNKVLNVLAFLQAAMDFPE--DVE 176 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S +E L +IL D+ I K EI+R G +VI G N GKSSL NAL + + Sbjct: 177 ESSIEEQLREILVETEDL---IESAKTAEILRKGISLVIAGRPNVGKSSLMNALVGMERS 233 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IV+ IPGTTRD + L V + DTAG+R TDD +E+EG+K +E ADL++ L Sbjct: 234 IVSQIPGTTRDYIEQYTVLGKIPVNVVDTAGLRHTDDPIEQEGVKLALRRIEEADLVIFL 293 Query: 306 KEINS------KKEISFPKNIDFIFIGTKSDLYSTYTEEYD--HLISSFTGEGLEELINK 357 + ++ K+ + + I +G K D E++ + +S+ G++ +I Sbjct: 294 YDASTGWTDEDKQMFNLIQEEKTIVVGNKID-KGKGNEQHPKAYFVSAKEKTGIDRIIEA 352 Query: 358 IKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSL 416 I +++ + KL S +R + L +T+ + A L ++ A++L A +L Sbjct: 353 IHQLMNITEPPKLLVS----QRQMGLLEKTLGDVHDA-LEHLSVYAEVAADDLFSALRNL 407 Query: 417 GK-ITGCVDVEQLLDIIFSKFCIGK 440 I G V+ E LL +FS FCIGK Sbjct: 408 TTLIDGDVE-EDLLSTVFSNFCIGK 431 >gi|19703358|ref|NP_602920.1| tRNA modification GTPase TrmE [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|25009491|sp|Q8RHA2|MNME_FUSNN RecName: Full=tRNA modification GTPase mnmE gi|19713420|gb|AAL94219.1| Thiophene and furan oxidation protein THDF [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 455 Score = 194 bits (492), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 149/459 (32%), Positives = 242/459 (52%), Gaps = 31/459 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK---KKKPFPRKASLRYFFGLDG-RIL 61 +TI A+ST ISI+R+SG + E I K KK + S+ Y +D I+ Sbjct: 4 DTIAAISTPRGEGGISIVRMSGQDSLNILEKIFKPKNKKVSELKNYSINYGHIIDNEHIV 63 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121 D+ L+ + +P ++T ED E + HGG V +LE + K R+A GEF++RAF NG Sbjct: 64 DEVLVSIMKAPNTYTREDIIEINCHGGYLVTEKVLEVVLK-NGARIAEIGEFTKRAFLNG 122 Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181 +IDL +AE++ D+I +TE LS+ + G+L + + + I LD+ EE Sbjct: 123 RIDLTQAEAVIDVIHGKTEKSLSLSLNQLRGDLRDKIATIKKSILDLAAHINVVLDYPEE 182 Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 + + + ++ ++ +I +S G+II++G K I+G N GKSS+ N+L + Sbjct: 183 -GIDDPVPENLVENLKKASAEIKDLVSSYDKGKIIKDGIKTAIIGKPNVGKSSILNSLLR 241 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 +D AIVT IPGTTRD++ +++ G + + DTAGIR TDDIVE G++++ + +ADL Sbjct: 242 EDRAIVTHIPGTTRDIIEEVININGIPLLLVDTAGIRNTDDIVENIGVEKSKELINSADL 301 Query: 302 ILLLKE---------------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF 346 IL + + IN+ K I ID I + +L E IS+ Sbjct: 302 ILYVIDTSREIDEEDFRIYDIINTDKVIGILNKID---IKKEINLSKFPKIEKWIEISAL 358 Query: 347 TGEGLEELINKIKSILSNK-----FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401 + G++ L N+I + N+ +KL + HK L ++ + L + + Sbjct: 359 SKLGIDNLENEIYKYIMNENIEDSSQKLVITNVRHKSALEKTNEAL--LNIIETIDMGLP 416 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++A +++ A SL ++TG + E LLD IFS FC+GK Sbjct: 417 MDLMAVDIKDALDSLSEVTGEISSEDLLDHIFSNFCVGK 455 >gi|75761491|ref|ZP_00741455.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74491030|gb|EAO54282.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 332 Score = 194 bits (492), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 109/307 (35%), Positives = 187/307 (60%), Gaps = 7/307 (2%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLD---G 58 E +TI A+ST AI+I+R+SG + + I K K P ++ Y +D Sbjct: 2 EFDTIAAISTALGEGAIAIVRVSGDDAVEKVDRIFKGKDLTEVP-SHTIHYGHIVDLDTN 60 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 +++++ ++ + +P +FT E+ E + HGG+ VN +L+ L +RLA PGEF++RAF Sbjct: 61 QVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAF 119 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG+IDL +AE++ DLI ++T+ +++ M G LS L G+ ++ + +E ++D+ Sbjct: 120 LNGRIDLSQAEAVMDLIRAKTDRAMNVAINQMEGRLSKLIGRLRQEILETLAHVEVNIDY 179 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E +DV+ + ++ ++++I + K G+I+R G I+G N GKSSL N+ Sbjct: 180 PEYDDVEEMTHNILIEKATHVRSEIEKILETSKQGKILREGIATAIIGRPNVGKSSLLNS 239 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L ++ AIVTDI GTTRDV+ +++ G +K+ DTAGIRET+D+VE+ G++R+ + Sbjct: 240 LVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSKEMMSQ 299 Query: 299 ADLILLL 305 ADL+L++ Sbjct: 300 ADLVLVV 306 >gi|313671977|ref|YP_004050088.1| tRNA modification gtpase trme [Calditerrivibrio nitroreducens DSM 19672] gi|312938733|gb|ADR17925.1| tRNA modification GTPase TrmE [Calditerrivibrio nitroreducens DSM 19672] Length = 437 Score = 194 bits (492), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 142/441 (32%), Positives = 229/441 (51%), Gaps = 11/441 (2%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A T + SA+ ++R+SG +V + R + Y+ + D + Sbjct: 2 DTIVAPITPLINSAVIVVRISGDDALKVLKLFDISNLEHRRVYNATYY---GSEVRDDVI 58 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 L F +P S+TGED E HG +V+ + + K+ R A PGEF++R F NGKIDL Sbjct: 59 LTFFKAPNSYTGEDVLEVSFHGNPLIVSSFISDCYKL-GFRFAEPGEFTKRRFLNGKIDL 117 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AES+ DLI+S+++ + S ++G L I K+ I S IEA ++F EEE Q Sbjct: 118 SQAESILDLINSKSKYSIQFSYNTLTGALKKRVDSIISKMVDIGSVIEAFIEFPEEELDQ 177 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 + S + ++I + N++S+ IS + + G+ +VI G N GKSSL N L ++ + Sbjct: 178 S-SFDNLYHEIELISNEVSTLISNYNTIQHYKTGFAVVIAGKPNVGKSSLLNFLLSQERS 236 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IV+DIPGTTRD + +L G +K+ DTAG+R + D +EK GI R+ +++ADL+++L Sbjct: 237 IVSDIPGTTRDYILEYANLGGIPIKLIDTAGVRSSSDTIEKLGIDRSLEMIQHADLVIVL 296 Query: 306 KEINSKKE-----ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKS 360 + +S + + K+ + K DL + E+D S +++++ KI Sbjct: 297 LDASSFDDEDRYILDITKDKTRLIFVNKVDLVANLDIEHDLAFSLKYSIDVDKIVPKITE 356 Query: 361 ILSNKFKKLPF-SIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKI 419 LS + S+ + RHL + L LDI A L+ + L +I Sbjct: 357 KLSLSDSDSAYTSVLINDRHLTLFKDFLSCLNSLVNGLTSLDLDIAAFELQQSLNILYEI 416 Query: 420 TGCVDVEQLLDIIFSKFCIGK 440 TG + +L+ IF +FCIGK Sbjct: 417 TGERYTDSILNNIFERFCIGK 437 >gi|296328796|ref|ZP_06871310.1| tRNA modification GTPase TrmE [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296154131|gb|EFG94935.1| tRNA modification GTPase TrmE [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 455 Score = 194 bits (492), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 149/459 (32%), Positives = 242/459 (52%), Gaps = 31/459 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK---KKKPFPRKASLRYFFGLDG-RIL 61 +TI A+ST ISI+R+SG + E I K KK + S+ Y +D I+ Sbjct: 4 DTIAAISTPRGEGGISIVRMSGQDSLNILEKIFKPKNKKVSELKNYSINYGHIIDNEHIV 63 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121 D+ L+ + +P ++T ED E + HGG V +LE + K R+A GEF++RAF NG Sbjct: 64 DEVLVSIMKAPNTYTREDIIEINCHGGYLVTEKVLEVVLK-NGARIAEIGEFTKRAFLNG 122 Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181 +IDL +AE++ D+I +TE LS+ + G+L + + + I LD+ EE Sbjct: 123 RIDLTQAEAVIDVIHGKTEKSLSLSLNQLRGDLRDKIATIKKSVLDLAAHINVVLDYPEE 182 Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 + + + ++ ++ +I +S G+II++G K I+G N GKSS+ N+L + Sbjct: 183 -GIDDPVPENLVENLKKASAEIKDLVSSYDKGKIIKDGIKTAIIGKPNVGKSSILNSLLR 241 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 +D AIVT IPGTTRD++ +++ G + + DTAGIR TDDIVE G++++ + +ADL Sbjct: 242 EDRAIVTHIPGTTRDIIEEVININGIPLLLVDTAGIRNTDDIVENIGVEKSKELINSADL 301 Query: 302 ILLLKE---------------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF 346 IL + + IN+ K I ID I + +L E IS+ Sbjct: 302 ILYVIDTSREIDEEDFRIYDIINTDKVIGILNKID---IKKEINLSKFPKIEKWIEISAL 358 Query: 347 TGEGLEELINKIKSILSNK-----FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401 + G++ L N+I + N+ +KL + HK L ++ + L + + Sbjct: 359 SKLGIDNLENEIYKYIMNENIEDSSQKLVITNVRHKSALEKTNEAL--LNIIETIDMRLP 416 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++A +++ A SL ++TG + E LLD IFS FC+GK Sbjct: 417 MDLMAVDIKDALDSLSEVTGEISSEDLLDHIFSNFCVGK 455 >gi|320530991|ref|ZP_08032023.1| tRNA modification GTPase TrmE [Selenomonas artemidis F0399] gi|320136740|gb|EFW28690.1| tRNA modification GTPase TrmE [Selenomonas artemidis F0399] Length = 462 Score = 193 bits (491), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 151/463 (32%), Positives = 236/463 (50%), Gaps = 25/463 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF------PRKASLRYFF 54 M E++TI ++T I I+R+SG V + + + P A + Sbjct: 2 MRGERDTISQIATPPGAGGIGIVRVSGADALHVARAVFRPARGGRLEGIEPYTARYGHIV 61 Query: 55 GLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114 DG ++D+ +L+ +P S+TGED+AE HGG V+ +L + R A GEF+ Sbjct: 62 AADGTVIDECVLLYMRAPHSYTGEDTAELQCHGGTLVLREVLLRTWEA-GARPAEAGEFT 120 Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174 +RAF NG++DL AE + +LIS+++ R + E M+G L+ +L + IEA Sbjct: 121 KRAFLNGRLDLSRAEGVMELISAKSARAVRAARERMAGALAEKIAGIRTRLLGAIAHIEA 180 Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234 +DF E+ D+ + + DI D++ + G I+R G K VI+G N GKSS Sbjct: 181 GIDFPED-DIPEARTGALAADIAAASADVARLLEGADAGRILREGMKTVIVGRPNVGKSS 239 Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294 L NAL + AIVTD+PGTTRDV+ + +EG +++ DTAG+R +D VE+ G+ RT Sbjct: 240 LLNALLGMERAIVTDVPGTTRDVIEEQIVIEGIPLRLLDTAGLRAAEDAVEQIGVARTQR 299 Query: 295 EVENADLILLL----KEINSKKE--ISFPKNI--DFIFIGTKSDLYSTYT-EEYDHL--- 342 + +A+L+L + + + E I +N + I + K D S T ++ L Sbjct: 300 HLADAELVLAVFDGAAPLTPEDEDLIVRLRNCAAEMIILCNKEDRDSVLTAADFSMLDAP 359 Query: 343 ---ISSFTGEGLEELINKIKSILSNKFKKL-PFSIPSHKRHLYHLSQTVRYLEMASLN-E 397 IS+ G GL++L I I+ L ++P+ +R L + +L A Sbjct: 360 VLVISAQAGTGLDDLRRAIAEIVRRMEGDLGDGALPNVERETEALRRAAEHLRTAQETLA 419 Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D G D ++ +LR A LG+I G L+D IFS+FCIGK Sbjct: 420 ADMGTDFVSIDLRAAYEILGEILGETADTDLIDKIFSEFCIGK 462 >gi|281423258|ref|ZP_06254171.1| tRNA modification GTPase TrmE [Prevotella oris F0302] gi|281402594|gb|EFB33425.1| tRNA modification GTPase TrmE [Prevotella oris F0302] Length = 454 Score = 193 bits (491), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 144/464 (31%), Positives = 241/464 (51%), Gaps = 44/464 (9%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFI---CKKKKPFPRKASLRYFFGL---DGRI 60 TI A++T A AI I+R+SG ++ + + K+ K + ++ + G I Sbjct: 5 TICALATSA-GGAIGIVRVSGDKATEITDRVFSGIGKRSLLEAKGNTVHYGEIHDQQGNI 63 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+ L+ VF +P S+TGED E HG V++ +++ L R A PGEF++RA+ N Sbjct: 64 IDEVLVSVFRAPHSYTGEDCTEISCHGSTYVLSQVVKVLID-AGCRQAAPGEFTKRAYLN 122 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GK+DL +AE++ADLI+S + +L++ + G SS + ++L I S +E +LDFS+ Sbjct: 123 GKMDLSQAEAVADLIASTNKASHKLALSQLKGHFSSELSRLREQLLKITSLLELELDFSD 182 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E+++ E+ + I++ I + G ++ G + I+G +N GKS+L N L Sbjct: 183 HEELEFADRSELKTLAEKIHERIATLIHSFETGNALKKGIPVAIIGKTNVGKSTLLNCLL 242 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 +D AIV++I GTTRDV+ +++G + DTAGIRET D+VE+ GI+R + ++ A Sbjct: 243 HEDKAIVSNIHGTTRDVIEDTTEIKGVTFRFIDTAGIRETKDVVEQLGIERAYKKISEAT 302 Query: 301 LILLL-------KEINSKKEISFPKNI----------DFIFIGTKSDLYSTYTEEYDHLI 343 ++L + +E +++ K + DF I S + Y I Sbjct: 303 IVLWVADEQPTTEEYTEIHQLTAEKKLLLVFNKMDRKDFKPITINSKFHVIY-------I 355 Query: 344 SSFTGEGLEEL---INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV-RYLEMASLNEKD 399 S+ + + EL I ++ I + + H L H + ++ R +E D Sbjct: 356 SAKHKQNMAELETAIYEVADIPEITENSIIVTNARHYEALVHANDSILRVIEAM-----D 410 Query: 400 CGL--DIIAENLRLASVSLGKITGC-VDVEQLLDIIFSKFCIGK 440 GL D+I+E+LRL L +ITG + ++L IF FCIGK Sbjct: 411 TGLSGDLISEDLRLCLEQLAEITGGQITTNEVLGNIFKHFCIGK 454 >gi|323700635|ref|ZP_08112547.1| tRNA modification GTPase TrmE [Desulfovibrio sp. ND132] gi|323460567|gb|EGB16432.1| tRNA modification GTPase TrmE [Desulfovibrio desulfuricans ND132] Length = 463 Score = 193 bits (491), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 144/464 (31%), Positives = 232/464 (50%), Gaps = 30/464 (6%) Query: 2 NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK-KPFPRKASLRYFFG--LDG 58 H ++TI A++T + IIR+SGP + + + F A R G +D Sbjct: 5 RHAQDTIAAIATPPGDGGVGIIRISGPRARAIARALFRPAVASFTDFAPYRLHHGRVVDA 64 Query: 59 R--ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 R +LD L P P S+TGED E + HGG V+ +L+E RLA GEF+ R Sbjct: 65 REAVLDDVLCAFMPGPNSYTGEDVVELNCHGGRTVLAAVLQECLDR-GARLAERGEFTYR 123 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF +G++DL +AE++A++I + T+ L+ +SG L +L +R+ + + Sbjct: 124 AFMHGRMDLSQAEAVAEMIHAPTKAALHLAQVKLSGLLGRRIADLRARLEGLRAQLAVAV 183 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 DF +EE ++ S E+ + ++ DI+ + R G +V+ G NAGKSSL Sbjct: 184 DFPDEE-LECLSPDELAGTVEAVRADIAGLLRAVDRTRAWREGALVVLAGRVNAGKSSLM 242 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 NAL ++ AIVTD PGTTRD L L+L+G ++++DTAG+R TDD VE G++ Sbjct: 243 NALLGRNRAIVTDRPGTTRDYLEETLNLDGLSIRLADTAGMRATDDAVEAAGLEMGRELR 302 Query: 297 ENADLILLL---------KEINSKKEISFPKNIDFIFIGTKSDLYS---TYTEEYDHL-- 342 + A L+LLL + +++ + + K + + K+DL + T + L Sbjct: 303 DRAALVLLLLDGTAAADAETLDAARRMGPDKGLAVL---NKADLDAFDETGGAQLAALGF 359 Query: 343 ----ISSFTGEGLEELINKIK-SILSNKFKKLPFSIPSHKRHLYHLSQTVR-YLEMASLN 396 +S+ TG GL+ L +I+ +L + P + + R L++ R +A+ Sbjct: 360 ETLAVSAKTGAGLDRLAARIRERVLRGAGQPDPDELAPNARQAAVLAEADRELAGLAADA 419 Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D+++ L A L ITG + +L+ IF FCIGK Sbjct: 420 GAGIPYDLLSVRLETACDVLASITGEIAANDVLNAIFDTFCIGK 463 >gi|224418482|ref|ZP_03656488.1| tRNA modification GTPase TrmE [Helicobacter canadensis MIT 98-5491] gi|253827795|ref|ZP_04870680.1| tRNA modification GTPase [Helicobacter canadensis MIT 98-5491] gi|313142012|ref|ZP_07804205.1| tRNA modification GTPase TrmE [Helicobacter canadensis MIT 98-5491] gi|253511201|gb|EES89860.1| tRNA modification GTPase [Helicobacter canadensis MIT 98-5491] gi|313131043|gb|EFR48660.1| tRNA modification GTPase TrmE [Helicobacter canadensis MIT 98-5491] Length = 461 Score = 193 bits (491), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 142/464 (30%), Positives = 242/464 (52%), Gaps = 38/464 (8%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF--PRKASLRYFFGLDGRILDK 63 +TI A +T S++++IRLSG + + K R A L + +G +LD+ Sbjct: 7 QTIVAPATTYGKSSLNVIRLSGQDSLLIASKLAKVNPNHFKVRYAKLTKIYFQNGELLDE 66 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 +LI F +P S+T ED EF HGG + ILEE K+ RLA PGEF++RAF G+I Sbjct: 67 CILIYFKAPHSYTTEDVIEFQCHGGTFIAQSILEECIKL-GARLAKPGEFTKRAFLGGRI 125 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL +A+++A LI S ++ M ++GE+ S L + + E +D+++E Sbjct: 126 DLSQAQAIAKLIESSNANAHKMLMRHLNGEMYSFCENLRKNLLTLLAHSEVFIDYADEAL 185 Query: 184 VQNFSSKEVLN----DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 Q+ + +LN + L+N + I + L E GY++ I+G N GKSSL NAL Sbjct: 186 PQDLM-ENLLNRLDSTLQTLQNLLEQSIQKKSLFE----GYRLCIIGKPNVGKSSLLNAL 240 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 +D AIV+DI GTTRD + + LEG+L+++ DTAGIR++ DI+E +GI+R+ + E + Sbjct: 241 LHEDRAIVSDIAGTTRDSIEENFLLEGHLLRLIDTAGIRQSQDIIETKGIERSLQKAEQS 300 Query: 300 DLILLLKEINSKKE----------ISFPKNIDFIFIGTKSDLYSTYTEEY---------- 339 D+++ L + + E ++ + I + K+DL ++ + Sbjct: 301 DILIALFDSSRPLEEEDLKIIEILKTYQDSKKIIVLLNKTDLKGSFDTQILAPFNPLNLC 360 Query: 340 ---DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396 D+L S+ L N + S+L+++ + S + + ++ L + L Sbjct: 361 LKDDNLASN--NSLLSHFKNHLISLLNSQESSQMLLLVS-QYQFQAIQACIQALYDSKLP 417 Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++ L++ + ++ A +L IT + Q+LD++FS FC+GK Sbjct: 418 LENGELELFSFHINEALKALASITKPYEYSQMLDVMFSDFCLGK 461 >gi|295320975|gb|ADG01353.1| tRNA modification GTPase TrmE [Clostridium botulinum F str. 230613] Length = 301 Score = 193 bits (491), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 118/300 (39%), Positives = 180/300 (60%), Gaps = 17/300 (5%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--------KPFPRKASLRYFF 54 E +TI AV+T ISIIR+SG + I K K KP+ S+RY F Sbjct: 2 KEFDTIAAVATPVGEGGISIIRISGDKSLDIVSSIFKGKNDRTLDDIKPY----SMRYGF 57 Query: 55 GLDGR---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPG 111 ++ ++D+ L+ P SFT ED+ E + HGG+ IL+EL K RLA PG Sbjct: 58 IIEKESKEMIDEVLVSYMKGPRSFTAEDTLEINCHGGVIPTKKILKELIK-SGARLAEPG 116 Query: 112 EFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSF 171 EF++RAF NG+IDL +AE++ D+I S+T++ + +++ G LS +++ I + Sbjct: 117 EFTKRAFLNGRIDLSQAEAVIDIIRSKTDLSMKSALKQAEGTLSKEINSIRNRMIKIIAH 176 Query: 172 IEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAG 231 IEA +D+ E+ D++ + +++ D+ + N I + IS + G+I+R G VI+G N G Sbjct: 177 IEATVDYPED-DLEEITGQKIKVDLKEIINKIDNLISASEEGKILREGLNTVIVGKPNVG 235 Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR 291 KSSL NAL ++ AIVT+IPGTTRDV+ ++++G KI DTAGIRET+D+VEK ++ Sbjct: 236 KSSLLNALINENKAIVTEIPGTTRDVIEEYINIDGIPTKIVDTAGIRETEDVVEKNWCRK 295 >gi|37572951|dbj|BAC98601.1| putative tRNA modification GTPase trmE [Oryza sativa Japonica Group] Length = 552 Score = 193 bits (491), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 149/479 (31%), Positives = 245/479 (51%), Gaps = 58/479 (12%) Query: 7 TIFAVST--GALPSAISIIRLSGPSCFQVCEFICKKKK----PF-PRKASLRYFFGLD-- 57 TI A+ T G P+A+ I+RLSGP V + + + P+ PR + Y LD Sbjct: 87 TIAAIVTSLGGGPAAVGIVRLSGPDAAAVAGRVFRPARRAAPPWRPRSHFVEYGVALDRD 146 Query: 58 GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 G ++D+ L++ +P S+T ED E HG + +L + RLA+PGEF+ RA Sbjct: 147 GGVIDEVLVVPMLAPRSYTREDVVELQCHGNDLCLRRVLRACLEA-GARLADPGEFTVRA 205 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NG++DL +AE+++ LIS+++ ++ G+ G S+L + + + IEA LD Sbjct: 206 FLNGRLDLAQAENVSRLISAKSAAAADSALAGIQGGFSALVKSLRSRCIELLTEIEARLD 265 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 F E+++ +++ I ++ ++ + +++++G ++ I+G N GKSSL N Sbjct: 266 F--EDELPPLDLTMLVSKINGMRQEVQDALDTANYDKLLQSGLQVAIIGRPNVGKSSLLN 323 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 A +K + AIVT+I GTTRDV+ ++ + G + + DTAGIRETDDIVEK G++R+ Sbjct: 324 AWSKSERAIVTEIAGTTRDVVEANVSIHGIPITLLDTAGIRETDDIVEKIGVERSEAAAL 383 Query: 298 NADLILL-LKEIN---------------SKKEISFPKNIDFIFIGTKSDLYSTYT-EEYD 340 ADLI++ + ++ SKK P + + + K D + E+++ Sbjct: 384 GADLIIMTISAVDGWTEDDTKLIEHVLISKKSSGAP--VPMVLVINKVDCAPFISGEQFE 441 Query: 341 HLISSF---------TGEGLEELINKIKSILSNKFKKLPFSIPSHKR----------HLY 381 F TG+G+ EL I + + +PS R L Sbjct: 442 QFHGVFKKHVQTCAVTGKGISELEKAIIEVRGLE------PVPSEGRRWTVNQRQFEQLL 495 Query: 382 HLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 Q LE +S+NE+ +D +LR A+++L I+G E++L IFSKFCIGK Sbjct: 496 RTQQAFTRLE-SSINEQ-LPMDFWTIDLREAALALATISGEDISEEVLSSIFSKFCIGK 552 >gi|255532210|ref|YP_003092582.1| tRNA modification GTPase TrmE [Pedobacter heparinus DSM 2366] gi|255345194|gb|ACU04520.1| tRNA modification GTPase TrmE [Pedobacter heparinus DSM 2366] Length = 456 Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 163/466 (34%), Positives = 248/466 (53%), Gaps = 45/466 (9%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL--DGRI-LD 62 ETI A+ST AI +IRLSG + + K +AS FGL DG I +D Sbjct: 5 ETIVALSTPPGLGAIGVIRLSGKDAIAITNSVFSGKNLLA-QASHTIHFGLIKDGDIVID 63 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 + L+ +F +P+S+T E+ E HG ++ I+ L + A PGEF+ RAF NG Sbjct: 64 EVLVSLFVAPKSYTKENVVEISCHGSNYIIQQIINLLIR-KGASAAKPGEFTLRAFLNGG 122 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 +DL +AE++ADLISS++ ++M + G S+ ++L H S IE +LDF+EE Sbjct: 123 LDLSQAEAVADLISSDSAAAHSVAMNQLRGGFSTELNVLREQLIHFASMIELELDFAEE- 181 Query: 183 DVQNFSSK----EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 DV+ F+++ E++N I + N + I +LG +I+ G VI G NAGKS+L NA Sbjct: 182 DVE-FANRGQLQELINKITLVLNKL---IRSFELGNVIKMGINTVIAGRPNAGKSTLLNA 237 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV-E 297 L +D AIV++I GTTRD + L++ G ++ DTAGIRE D +E G+++T ++ + Sbjct: 238 LLNEDRAIVSEIAGTTRDTIEEVLNINGINFRLIDTAGIREATDAIEVIGVEKTMQKISQ 297 Query: 298 NADLILLLKEIN-SKKEI-----SFPK-NIDFIFIGTKSDLYSTYTEEYDHL-------- 342 +A L+ L +N S E+ S K I FI + K DL +Y++ L Sbjct: 298 SAVLVYLFDVVNISATEVRDDILSLHKPGIAFIAVANKMDL--SYSDRLKELKLPSDISF 355 Query: 343 --ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC 400 IS+ + +E+ + I ++ ++ RH+ L +T A+LN Sbjct: 356 ISISAKEHQNIEDFKQLLYEIAVGDKLSDNHTMVTNIRHVEALEKT-----RAALNNVAE 410 Query: 401 GL------DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 GL D +A +++ A LG ITG V + LL+ IFSKFCIGK Sbjct: 411 GLRNPVTSDFLAMDIKQALHYLGLITGVVSTDDLLENIFSKFCIGK 456 >gi|262066862|ref|ZP_06026474.1| tRNA modification GTPase TrmE [Fusobacterium periodonticum ATCC 33693] gi|291379413|gb|EFE86931.1| tRNA modification GTPase TrmE [Fusobacterium periodonticum ATCC 33693] Length = 455 Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 148/461 (32%), Positives = 244/461 (52%), Gaps = 35/461 (7%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKA-SLRYFFGLDG-RIL 61 +TI A+ST ISI+R+SG + E F K KK K S+ Y +D I+ Sbjct: 4 DTIAAISTPRGEGGISIVRMSGQDSLNILEKIFRAKNKKVSELKNYSINYGHIIDNEHIV 63 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121 D+ L+ + +P ++T ED E + HGG V +L+ + K R+A GEF++RAF NG Sbjct: 64 DEVLVSIMKAPNTYTREDIVEINCHGGFLVTEQVLQVVLK-NGARIAEIGEFTKRAFLNG 122 Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181 +IDL +AE++ D+I +TE LS+ + G+L + + + I LD+ EE Sbjct: 123 RIDLTQAEAVIDVIHGKTEKSLSLSLNQLRGDLRDKIATIKKSVLDLAAHINVVLDYPEE 182 Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 + + + +++++ +I IS G+II++G K I+G N GKSS+ N+L + Sbjct: 183 -GIDDPVPENLVDNLKKASAEIKDLISSYDKGKIIKDGIKTAIIGKPNVGKSSILNSLLR 241 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 +D AIVT IPGTTRD++ +++ G + + DTAGIR TDDIVE G++++ + +ADL Sbjct: 242 EDRAIVTHIPGTTRDIIEEVININGIPLLLVDTAGIRNTDDIVENIGVEKSKELINSADL 301 Query: 302 ILLLKE---------------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL--IS 344 IL + + IN+ K I ID K ++ + + D IS Sbjct: 302 ILYVIDTSREIDEEDFRIYDIINTDKVIGILNKIDI-----KKEIDLSKFPKIDKWIEIS 356 Query: 345 SFTGEGLEELINKIKSILSNK-----FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399 + + G++ L ++I + N+ +KL + HK L ++ + L + + Sbjct: 357 ALSKIGIDNLEDQIYKYIMNENVEDSSQKLVITNVRHKSALEKTNEAL--LNIIETIDMG 414 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++A +++ A SL ++TG + E LLD IFS FC+GK Sbjct: 415 LPMDLMAVDIKDALDSLSEVTGEISSEDLLDHIFSNFCVGK 455 >gi|256027561|ref|ZP_05441395.1| tRNA modification GTPase TrmE [Fusobacterium sp. D11] gi|289765520|ref|ZP_06524898.1| thiophene and furan oxidation protein THDF [Fusobacterium sp. D11] gi|289717075|gb|EFD81087.1| thiophene and furan oxidation protein THDF [Fusobacterium sp. D11] Length = 455 Score = 193 bits (490), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 148/459 (32%), Positives = 241/459 (52%), Gaps = 31/459 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK---KKKPFPRKASLRYFFGLDG-RIL 61 +TI A+ST ISI+R+SG + E I + KK + S+ Y +D I+ Sbjct: 4 DTIAAISTPRGEGGISIVRMSGQDSLNILEKIFRPKNKKVSELKNYSINYGHIIDNEHIV 63 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121 D+ L+ + +P ++T ED E + HGG V +LE + K R+A GEF++RAF NG Sbjct: 64 DEVLVSIMKAPNTYTREDIVEINCHGGFLVTEKVLEVVLK-NGARIAEIGEFTKRAFLNG 122 Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181 +IDL +AE++ D+I +TE LS+ + G+L + + + I LD+ EE Sbjct: 123 RIDLTQAEAVIDVIHGKTEKSLSLSLNQLRGDLRDKITTIKKSVLDLAAHINVVLDYPEE 182 Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 + + + ++ ++ +I + G+II++G K I+G N GKSS+ N+L + Sbjct: 183 -GIDDPVPENLVENLKKASAEIKDLVLSYDKGKIIKDGIKTAIIGKPNVGKSSILNSLLR 241 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 +D AIVT IPGTTRD++ +++ G + + DTAGIR TDDI+E G++++ + +ADL Sbjct: 242 EDRAIVTHIPGTTRDIIEEVININGIPLLLVDTAGIRNTDDIIENIGVEKSKELINSADL 301 Query: 302 ILLLKE---------------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF 346 IL + + IN+ K I ID I DL E IS+ Sbjct: 302 ILYVIDISREIDEEDFRIYDIINTDKVIGILNKID---IKKDIDLSKFPKIEKWVEISAL 358 Query: 347 TGEGLEELINKIKSILSNK-----FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401 + G++ L N+I + N+ +KL + HK L ++ + L + +K Sbjct: 359 SKIGIDNLENEIYKFIMNENIEDSSQKLVITNVRHKSALEKTNEAL--LNIIETIDKGFP 416 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++A +++ A SL ++TG + E LLD IFS FC+GK Sbjct: 417 MDLMAVDIKDALDSLSEVTGEISSEDLLDHIFSNFCVGK 455 >gi|239908445|ref|YP_002955187.1| putative tRNA modification GTPase TrmE [Desulfovibrio magneticus RS-1] gi|239798312|dbj|BAH77301.1| putative tRNA modification GTPase TrmE [Desulfovibrio magneticus RS-1] Length = 463 Score = 193 bits (490), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 139/459 (30%), Positives = 218/459 (47%), Gaps = 26/459 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP-----FPRKASLRYFFGLDGRI 60 +TI AV+T + IIR+SGP+ + E + + +P P + F GR+ Sbjct: 7 DTIAAVATPPGRGGVGIIRVSGPAARDIAEKLFRSPRPDFSGLRPYRLHHGTFHAPGGRL 66 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ P P S+TG+D+AE HG AV+ +L + R A GEF++RAF N Sbjct: 67 LDEGMAAFMPGPGSYTGQDTAELFCHGSPAVLAAVLGAAYAL-GARPAEAGEFTKRAFLN 125 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G++DL +AE++A+LI++ +Q L++ ++G + + L + + I +DF E Sbjct: 126 GRLDLSQAEAVAELIAARGAVQADLALNRLTGGMGEAARELGQALADLLAGICLAVDFPE 185 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE V+ + + + I + + G+ R G + + G NAGKSSLFNAL Sbjct: 186 EE-VECLPREAFADGVAAAVARIDALLEAGQRAAPYRQGATVALFGKVNAGKSSLFNALL 244 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 D AIVT +PGTTRD L LDL+G V+++DTAG+R TDD +E G KR + A Sbjct: 245 GTDRAIVTALPGTTRDYLEESLDLDGLPVRLTDTAGLRATDDAIEDMGKKRGLEKARRAT 304 Query: 301 LIL-----------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI 343 L L +L E+ K ++ D + Sbjct: 305 LGLYVVDGSTPFAPDPEAEAVLAELGPGKVLAVATKADLPPAEPAPLAALAGRGIRGVAV 364 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL- 402 SS TG GL L+ I+++L+ + P+ R A + G+ Sbjct: 365 SSRTGHGLTGLVAAIRAMLTAENGPPEPDTPAPSDREAAALSAARAELAALAEDIASGIP 424 Query: 403 -DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D++ L A+ + ITG + +L+ +F +FCIGK Sbjct: 425 YDLMGVRLETAAGLVADITGETTPDDVLNAVFDRFCIGK 463 >gi|310830137|ref|YP_003962494.1| tRNA modification GTPase TrmE [Eubacterium limosum KIST612] gi|308741871|gb|ADO39531.1| tRNA modification GTPase TrmE [Eubacterium limosum KIST612] Length = 458 Score = 193 bits (490), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 147/454 (32%), Positives = 252/454 (55%), Gaps = 21/454 (4%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFG-----LD 57 ++TI AV+TG + I IIR+SGP + F+ K S + +G D Sbjct: 8 EDTIAAVATGLGGAGIGIIRVSGPEAVDIVTRLFVNHAGKTVEGAESHKLLYGNILEPED 67 Query: 58 GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 G+I+D+ L+ P S+T ED E + HGGI + IL+ + + RLA PGEF++RA Sbjct: 68 GKIIDEVLVSKMKGPFSYTAEDVVEINCHGGIVSLKRILDAVIR-SGARLAEPGEFTKRA 126 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NG++DL +AE++ D+IS++TE S+ + G+LS D L + + +EA++D Sbjct: 127 FLNGRLDLAQAEAVMDIISAKTEKSLEYSVGQLEGKLSQRLTAIDDLLIDVMANVEANID 186 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 + E D++ ++ + I + + + + G+I R G ILG N GKSSL N Sbjct: 187 YPEY-DIEEVTAAYLNAHIHQAMDMVDMLLKASETGKIYREGITTAILGEPNVGKSSLLN 245 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 L ++ AIVT+IPGTTRD++ +++ G KI DTAGIRETD++VE+ G++++ ++ Sbjct: 246 TLLMENKAIVTEIPGTTRDIIEEYINIGGIPFKIIDTAGIRETDNLVEQIGVEKSRQLIK 305 Query: 298 NADLILLLKEIN---SKKEISFPKNID---FIFIGTKSD--LYSTYTEEYDHLISSFTGE 349 N +LIL + +++ S++E + + +D IFI K+D + + E +S E Sbjct: 306 NTNLILFMTDLSRPFSEEEKTLIEELDPSKTIFIANKTDSMIENRDVPEGWLPLSLKEDE 365 Query: 350 GLEELINK-IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG--LDIIA 406 G+E L +K ++ ++ + I ++ RH++ L + + L+ A L D G L++++ Sbjct: 366 GVEALKDKMLEMVMGGSVDQEADYIVNNVRHVHLLEEAMACLKNA-LGTIDMGMPLELVS 424 Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++ + +ITG +++ IF FCIGK Sbjct: 425 IDIQDGLEKIREITGRSVGSDIINQIFKNFCIGK 458 >gi|225459366|ref|XP_002285809.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|302141924|emb|CBI19127.3| unnamed protein product [Vitis vinifera] Length = 571 Score = 193 bits (490), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 153/480 (31%), Positives = 241/480 (50%), Gaps = 53/480 (11%) Query: 7 TIFAVST--GALPSAISIIRLSGPSCFQVCEFICKKKKP-------------FPRKASLR 51 TI A+ T G PSA+ I+RLSGP + + + + P + Sbjct: 99 TIAAIVTSLGGPPSAVGIVRLSGPEAVAIVARVFRPARRNKGKTLGSGSGSWRPTSHVVE 158 Query: 52 YFFGLD--GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLAN 109 Y LD G ++D+ L I +P S+T ED E HG + +L + RLA Sbjct: 159 YGVVLDHHGNVVDEVLAIPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLES-GARLAE 217 Query: 110 PGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR 169 PGEF+ RAF NG++DL +AE++ LIS+++ ++ G+ G SSL + + Sbjct: 218 PGEFTLRAFLNGRLDLSQAENVGKLISAKSIAAADAALAGIQGGFSSLVRSLRIQCIELL 277 Query: 170 SFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSN 229 + IEA LDF +E + +++ I + D+ + + +++++G +I I+G N Sbjct: 278 TEIEARLDFDDE--MPPLDLNLIMDKIHSMSQDVENALETANYDQLLQSGLQIAIIGRPN 335 Query: 230 AGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGI 289 GKSSL NA +K + AIVT+I GTTRDV+ + + G V + DTAGIRETDDIVEK G+ Sbjct: 336 VGKSSLLNAWSKSERAIVTEIAGTTRDVVEASVSIHGIPVTLLDTAGIRETDDIVEKIGV 395 Query: 290 KRTFLEVENADLILLL----------------KEINSKK--EISFPKNIDFIFIGTKSDL 331 +R+ +AD+I++ + I++KK E S P I + K D Sbjct: 396 ERSEAVAISADVIIMTISALDGWTSQDTKLFNRIISNKKFVESSTP----VILVVNKIDC 451 Query: 332 YSTYTEEY--------DHLIS-SFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLY 381 + E H+ + + TG+G+ +L + I I+ NK ++R Sbjct: 452 APSACTELFMEGNSFSKHIFTCAVTGQGISDLESAIIEIVGLNKIPAGGRRWTVNQRQCE 511 Query: 382 HLSQTVRYL-EMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L +T L + S E++ LD +LR A+++LG+I+G E++L IF KFCIGK Sbjct: 512 QLVRTKEALARLISSIEEEMPLDFWTIDLREAALALGQISGEDISEEVLTNIFGKFCIGK 571 >gi|295425821|ref|ZP_06818502.1| tRNA modification GTPase TrmE [Lactobacillus amylolyticus DSM 11664] gi|295064514|gb|EFG55441.1| tRNA modification GTPase TrmE [Lactobacillus amylolyticus DSM 11664] Length = 461 Score = 193 bits (490), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 143/467 (30%), Positives = 249/467 (53%), Gaps = 42/467 (8%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK----KKKPFPRKASLRYFFGLD-- 57 E +TI A+ST ISI+R+SG ++ + K K P ++ Y +D Sbjct: 7 EFDTIAAISTPIGEGGISIVRMSGEDAVKIANQVFKGADLTKVP---THTIHYGHIIDPD 63 Query: 58 -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 + +D+ ++ V +P++FT ED E + HGGI V N +L+ L R+A+PGEF++R Sbjct: 64 TNKTIDEAMVTVLRAPKTFTREDIIEINCHGGIVVTNHVLQ-LLLAHGARMADPGEFTKR 122 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFI 172 AF NG+IDL +AES+ D++ ++T+ R++++ ++G ++ ++ + +D L ++ Sbjct: 123 AFVNGRIDLTQAESVMDIVRAKTDKARQVAVGQLAGGLMHKIRAMRKEILDTLANV---- 178 Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232 E ++D+ E D ++K++ + + I + + G I+RNG I+G N GK Sbjct: 179 EVNIDYPEY-DADQVTAKQMADTSKNVIQKIDRLLKTAQEGTILRNGLATAIVGRPNVGK 237 Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292 SSL N L + D AIVTD+ GTTRD L + + +K+ DTAGI TDD VEK G++R+ Sbjct: 238 SSLLNYLTQSDKAIVTDVAGTTRDTLEEYISVNSVPLKLIDTAGIHHTDDKVEKIGVERS 297 Query: 293 FLEVENADLIL---------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTE 337 ++ ADL+L LLKE +KK I +D T ++ + Sbjct: 298 QKALKQADLVLLLLDGSQELTDEDKTLLKETENKKRIIILNKMDLGQKLTAKGMHDSTGS 357 Query: 338 EY--DHLISSFTGEGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE-MA 393 E ++ + LE+LI K+ S ++N ++ + +++R L++ + L+ + Sbjct: 358 EVVSTSILKETNLDELEDLIKKMFFSGITNSNDQI---MVTNQRQAGLLAKAKKQLQDVV 414 Query: 394 SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E +DI + A +LG+ITG ++L++ +FS+FC+GK Sbjct: 415 KAVEDGVPVDIAQIDFNGAWDTLGEITGDSAPDELVNALFSQFCLGK 461 >gi|237738571|ref|ZP_04569052.1| thiophene and furan oxidation protein THDF [Fusobacterium sp. 2_1_31] gi|229424054|gb|EEO39101.1| thiophene and furan oxidation protein THDF [Fusobacterium sp. 2_1_31] Length = 455 Score = 192 bits (489), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 148/461 (32%), Positives = 244/461 (52%), Gaps = 35/461 (7%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKA-SLRYFFGLDG-RIL 61 +TI A+ST ISI+R+SG + E F K KK K S+ Y +D I+ Sbjct: 4 DTIAAISTPRGEGGISIVRMSGQDSLNILEKIFRAKSKKVSELKNYSINYGHIIDNEHIV 63 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121 D+ L+ + +P ++T ED E + HGG V +L+ + K R+A GEF++RAF NG Sbjct: 64 DEVLVSIMKAPNTYTREDIVEINCHGGFLVTEQVLQVVLK-NGARIAEIGEFTKRAFLNG 122 Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181 +IDL +AE++ D+I +TE LS+ + G+L + + + I LD+ EE Sbjct: 123 RIDLTQAEAVIDVIHGKTEKSLSLSLNQLRGDLRDKIATIKKSVLDLAAHINVVLDYPEE 182 Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 + + + +++++ +I IS G+II++G K I+G N GKSS+ N+L + Sbjct: 183 -GIDDPVPENLVDNLKKASAEIKDLISSYDKGKIIKDGIKTAIIGKPNVGKSSILNSLLR 241 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 +D AIVT IPGTTRD++ +++ G + + DTAGIR TDDIVE G++++ + +ADL Sbjct: 242 EDRAIVTHIPGTTRDIIEEVININGIPLLLVDTAGIRNTDDIVENIGVEKSKELINSADL 301 Query: 302 ILLLKE---------------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL--IS 344 IL + + IN+ K I ID K ++ + + D IS Sbjct: 302 ILYVIDISREIDEEDFRIYDIINTDKVIGILNKIDI-----KKEIDLSKFPKIDKWIEIS 356 Query: 345 SFTGEGLEELINKIKSILSNK-----FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399 + + G++ L ++I + N+ +KL + HK L ++ + L + + Sbjct: 357 ALSKIGIDNLEDEIYKYIMNENVEDSSQKLVITNVRHKSALEKTNEAL--LNIIETIDMG 414 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++A +++ A SL ++TG + E LLD IFS FC+GK Sbjct: 415 LPMDLMAVDIKDALDSLSEVTGEISSEDLLDHIFSNFCVGK 455 >gi|329668160|gb|AEB94108.1| putative tRNA modification GTPase TrmE [Lactobacillus johnsonii DPC 6026] Length = 461 Score = 192 bits (489), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 147/460 (31%), Positives = 248/460 (53%), Gaps = 32/460 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLDGR---I 60 +TI A+ST ISI+RLSG + + K P ++ Y +D + + Sbjct: 9 DTIAAISTPIGEGGISIVRLSGEDAVAIANKLFKGADLTQVPSH-TIHYGHIVDPKTKDV 67 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+ ++ V +P++FT ED E + HGG+ V N IL+ L R+A+PGEF++RAF N Sbjct: 68 VDETMVSVLRAPKTFTREDMVEINCHGGMIVTNDILQ-LLLANGARMADPGEFTKRAFMN 126 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFIEADL 176 G+IDL +AES+ D++ ++T+ R+++M ++G ++ ++ + +D + H E ++ Sbjct: 127 GRIDLTQAESVMDIVRAKTDKSRQVAMTQLAGGLLDKIRTMRQELLDTMAHE----EVNI 182 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D+ E D+ + +S+E+ + I + + G+IIRNG I+G N GKSSL Sbjct: 183 DYPEY-DMDDLTSQEMKKKAEEVSKQIDQLLKTAQEGKIIRNGLATAIVGRPNVGKSSLL 241 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N L + D AIVTDI GTTRD L + ++G +K+ DTAGI T++ VEK G++R+ + Sbjct: 242 NYLTQDDKAIVTDIAGTTRDTLEEYVSVKGVPLKLIDTAGIHHTENKVEKIGVERSKKAI 301 Query: 297 ENADLILLLKEINS------KKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEG 350 ADL+LLL + + K ++ N I I K DL + ++E I+ Sbjct: 302 AEADLVLLLLDASQDLTDEDKNLLNLTANKKRIIILNKQDLGTKISQEMIREITDNPIIV 361 Query: 351 LEELINKIKSILSNKFKKLPFS---------IPSHKRHLYHLSQTVRYLEMASLNEKDC- 400 L + + L N ++L FS + +++R L++ + LE D Sbjct: 362 TSILKQENMAALENAIEQLFFSGIENSQNQILVTNQRQAGLLAKAKQSLEDVVNGIDDAM 421 Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LD++ +L+ A +LG+ITG ++L+ +FS+FC+GK Sbjct: 422 PLDLVQIDLKNAWDTLGEITGESAPDELITQLFSQFCLGK 461 >gi|296125427|ref|YP_003632679.1| tRNA modification GTPase TrmE [Brachyspira murdochii DSM 12563] gi|296017243|gb|ADG70480.1| tRNA modification GTPase TrmE [Brachyspira murdochii DSM 12563] Length = 464 Score = 192 bits (489), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 143/463 (30%), Positives = 249/463 (53%), Gaps = 32/463 (6%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC----KKKKPFPRKASLRYFFGL---- 56 K+TI A+ST SA+++IR+SG ++ IC + K + + ++ L Sbjct: 7 KDTIAALSTPYSKSALALIRMSGSKALEIASKICFYAGDENKNITKFEHRKSYYALVKDE 66 Query: 57 DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 + +D+ +++ +P +FT ED+ EF HG I V++ +L L + R AN GEF+ R Sbjct: 67 NNTPIDELIVLSTLAPNTFTSEDTIEFISHGSIVVIDSLLNLLIR-NGARAANRGEFTYR 125 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 A+ NG+I + EAE++ DLI S + S+ M G L+ + D + + + +L Sbjct: 126 AYINGRIGISEAEAIHDLIDSNNRLMAEASIYKMRGRLTREIDKLRDNIKNSLILVYGEL 185 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 DF E+ D + FS +++ + + +K DI + + E + NG KI ILG NAGKSS+F Sbjct: 186 DFPED-DTETFSYDKLIENFINIKKDIENILYNSNRVENLINGIKIAILGRVNAGKSSIF 244 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RETDDIVEKEGIKRTFLE 295 N + K+ AIV++I GTTRD L+ ++ ++ + DTAG +E D+ +E EGI+R Sbjct: 245 NMILDKNRAIVSNIAGTTRDFLSENIYIDNIPFYLMDTAGFHKEADNDIELEGIERAKKC 304 Query: 296 VENADLILLL---------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH----L 342 A++IL + +IN + ++ K+ + I+I KSD + D Sbjct: 305 AYEANIILAVFDSSRNADENDINLIEFLTTLKDKNIIYILNKSDEEKKFDYNIDSNNIIT 364 Query: 343 ISSFTGEGLEELINKIKSILSNK----FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398 IS+ T EG ++LI ++K+ +++ F K + + R +L + ++ L++ K Sbjct: 365 ISTKTKEGKDKLIKELKNYVNDSDIDIFNKESY---VNNRERGYLEKGLKQLDICIEKSK 421 Query: 399 -DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LD +AE + + + LG ++G +D E++++ IF+ FCIGK Sbjct: 422 MSFSLDEVAEEMNILNNILGNVSGKIDAEEVINEIFANFCIGK 464 >gi|304437938|ref|ZP_07397884.1| tRNA modification GTPase TrmE [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369078|gb|EFM22757.1| tRNA modification GTPase TrmE [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 491 Score = 192 bits (489), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 141/459 (30%), Positives = 234/459 (50%), Gaps = 25/459 (5%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP------FPRKASLRYFFGLDG 58 ++TI ++T I IIR+SG V + + P A + DG Sbjct: 35 EDTISQIATPHGAGGIGIIRVSGEDALGVARRVFRPAAGGTLGDIAPYTARYGHIVAADG 94 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 ++D+ +L+ +P S+TGED+AE HGG V+ +L + R A GEF++RAF Sbjct: 95 TVIDECILLYMRAPHSYTGEDTAELQCHGGAVVLREVLLRTWEA-GARPAEAGEFTKRAF 153 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 +G++DL AES+ +LI++++ + E ++G S ++ + IEA +DF Sbjct: 154 LHGRLDLARAESVMELIAAKSTRAAHAARERLAGAFSHAVTDIRTQILSAVAHIEAGIDF 213 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E+ D+ S++ + +I + ++ G ++R+G K VI+G N GKSSL NA Sbjct: 214 PED-DIPAASAERLAAEIDAASAAVRRLLAGADTGRVLRDGVKTVIVGRPNVGKSSLLNA 272 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L + AIVTD+PGTTRDV+ ++ + G +++ DTAG+R +D VE+ G+ RT + + Sbjct: 273 LLGMERAIVTDVPGTTRDVIEEEISVAGIPLRLLDTAGLRAAEDAVEQIGVARTEQHLMD 332 Query: 299 ADLIL--------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT-EEYDHL------I 343 A+LIL L E ++ D I + +K D S + E++ + I Sbjct: 333 AELILAVFDASEPLTAEDHALLARLSAAAADTIILCSKEDRPSVLSAEDFAAVAAPVLRI 392 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLP-FSIPSHKRHLYHLSQT-VRYLEMASLNEKDCG 401 S+ G GL+ L +I + + + L ++P+ +R + L + A D G Sbjct: 393 SAQEGTGLDALREEIAAHIVRQEGDLSDGALPNKEREIEALRRAETHLAAAAETLAADLG 452 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D ++ +LR A +LG+I G L+D IFS+FCIGK Sbjct: 453 TDFVSIDLRAAYDALGEILGETVDTDLIDRIFSEFCIGK 491 >gi|261749388|ref|YP_003257073.1| tRNA modification GTPase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497480|gb|ACX83930.1| tRNA modification GTPase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 463 Score = 192 bits (488), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 152/467 (32%), Positives = 246/467 (52%), Gaps = 36/467 (7%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFI---CKKKKPFPRKASLRYFFGL---D 57 +++TI A++T SAIS+IR+SG + E I K +++ G + Sbjct: 3 DEDTIVALATPMGSSAISVIRISGNNSISTVETIFVSVISGKKLENQSTHTLHLGSIVDE 62 Query: 58 GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 +LD+ L+ +F SP S+TGE+ E HG + IL+ L K LRLA PGEF+ RA Sbjct: 63 NVLLDQVLVSIFRSPSSYTGENMIEISCHGSYYIQQKILQLLIK-KGLRLARPGEFTFRA 121 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F N K+DL +AE++ADLI SE + +S++ + G L+ KL S +E +LD Sbjct: 122 FLNKKVDLSQAEAIADLILSENQADHEISLQQIKGSLTHTIKNLRKKLLDFASLLELELD 181 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 FSEE DV E+ + + L+ + I LG I+ G + I+G N GKS+LFN Sbjct: 182 FSEE-DVIFAKRSELFSFLKDLEKTLKDLIESFSLGNAIKKGIYVAIIGEPNVGKSTLFN 240 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 + K++ +I++ I GTTRD + + L G DTAGIRET D +E G+++T +++ Sbjct: 241 YVIKENRSIISHIEGTTRDSIEGEFVLNGIHFHFVDTAGIRETKDPIEIMGVQKTMEKIQ 300 Query: 298 NADLILLLKEINSK---------KEIS-----FPKNIDFIFIGTKSDLYSTYTEEYD--- 340 + ++L L E ++K EI +P + I KSD+ S++ + Y Sbjct: 301 ESQVLLYLFEASTKEKKKQKKILHEIQLLHKKYPLK-KILAIANKSDV-SSFKDFYKIKS 358 Query: 341 -----HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR--YLEMA 393 IS+ G+++++ + ++ K ++ I + RH L +++ +L Sbjct: 359 KIPYFFEISAKNHHGIKKMLYTLSNLFIKKLQEKNI-IVTQNRHYEALKKSLEEVFLAHE 417 Query: 394 SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + N K D+I+ +++ A LG+ITG + E++L IFSKFCIGK Sbjct: 418 AFN-KRVSEDLISIHIKEALRYLGEITGEITNEEILKNIFSKFCIGK 463 >gi|260655716|ref|ZP_05861189.1| tRNA modification GTPase TrmE [Jonquetella anthropi E3_33 E1] gi|260629633|gb|EEX47827.1| tRNA modification GTPase TrmE [Jonquetella anthropi E3_33 E1] Length = 454 Score = 192 bits (488), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 151/460 (32%), Positives = 238/460 (51%), Gaps = 34/460 (7%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVC--EFICKKKKPFPRKASLRYFFGLDGRILDK 63 +TI A++T ++I+RLSGP +++ I + PR A G+ +D Sbjct: 4 DTIAAIATPWGDGGVAIVRLSGPDSWRIAHARVILPCGEMTPRYAHNGQLTDEWGQTIDH 63 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 L++ F +P S+TGED E H HGG + LE L R A PGEF+RRAFENG++ Sbjct: 64 VLVLPFKAPRSYTGEDVVEIHCHGGSLLAQRCLE-LVISAGARQALPGEFTRRAFENGRL 122 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE- 182 DL +AE++A LI + + R + +SGEL+ D L + + +E LDF +E+ Sbjct: 123 DLSQAEAVAALIHARSNEALRAANRTLSGELTEQVKDLRDGLISLAAEVEVGLDFPDEDV 182 Query: 183 ---DVQNFSSK-EVLNDILF-LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 D + + EVL +L LK+ +S G I+R G ++ ++G NAGKSSL N Sbjct: 183 PLVDDGTLAERMEVLRSLLADLKDRCAS-------GVILREGVRVALVGRPNAGKSSLLN 235 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEV 296 AL K+ +IVT +PGTTRD++ L G +++ DTAG+ E + D VE G++R + Sbjct: 236 ALLKESRSIVTSVPGTTRDIVEAVLTYRGVPLRLVDTAGMGEPSHDEVELLGVERAKKAM 295 Query: 297 ENADLILLLKEINSK------KEISFPKNIDFIFIGTKSDLYSTY-----TEEYDH---- 341 ++AD+ + + + + K I+ + + +KSDL + E++ Sbjct: 296 KSADVRVWIIDGSRPADDLDMKLIADAAAGSHVLVISKSDLERKFDEKELAEQFPDSPLV 355 Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDC 400 ++S+ G GL+EL I S L+ K + S+ + R + L LE L E Sbjct: 356 VLSAKKGAGLDELKEAIVS-LAYGNKSVDDSLNASVRQVGELKAASESLEDGRLALESGL 414 Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G +A L A +L ++ G + + LLD IFS+FC+GK Sbjct: 415 GQGAVASCLADAKRALDRLLGLENDQSLLDEIFSRFCVGK 454 >gi|257067216|ref|YP_003153472.1| tRNA modification GTPase TrmE [Anaerococcus prevotii DSM 20548] gi|256799096|gb|ACV29751.1| tRNA modification GTPase TrmE [Anaerococcus prevotii DSM 20548] Length = 452 Score = 192 bits (488), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 140/458 (30%), Positives = 245/458 (53%), Gaps = 28/458 (6%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFI---CKKKKPFPRKASLRYFFGL---- 56 E+ TI A+ST + ISI+R+SG F + + K+ K + + +G+ Sbjct: 2 EERTIAAISTPSGTGGISIVRMSGSKSFDIISRVFSPINGKELDKDKDNRKMRYGVIKDR 61 Query: 57 DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 G +D+ ++ P ++T ED E + HG V IL L +A GEF++R Sbjct: 62 KGETIDEVMVCFMKGPFTYTREDICEINCHGSFVSVKKILNLLLD-EGCDMAEGGEFTKR 120 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFI 172 AF NG+IDL +AE++ D+I+S ++ ++ S+ + G ++SS+ +D L+ + Sbjct: 121 AFLNGRIDLSQAEAVLDIINSTNDLSQKESIHQLQGSVKEKISSIRQDLLDALSRL---- 176 Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232 E ++F+E D ++ S E+++ + K I ++ G+I+R+G I+G N GK Sbjct: 177 EYSINFTE--DGEDLSPDEIISYMEKAKATIDKLLNTSNKGKILRDGINTTIIGKPNVGK 234 Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292 SSL N + K++ AIVTD+PGTTRD++T + + +KI+DTAGIRETDD+VEK G+ ++ Sbjct: 235 SSLLNKMLKENRAIVTDVPGTTRDLITEYISFGDFTLKINDTAGIRETDDLVEKIGVDKS 294 Query: 293 FLEVENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL---I 343 ++ +DLI+ + + + +K I K + I I K+DL + ++D + Sbjct: 295 IELIDESDLIIAIFDTSRPFDKEDEKIIDLIKGRNAIIILNKADLEDKFFHDFDQVTIKT 354 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGL 402 S EG+++L I + + K K + ++ RH L + L + ++ ++ L Sbjct: 355 SMAQDEGIDKLEEAITEMFNTKDIKRESVLITNTRHERLLKEASNKLSESLVDIKRGIPL 414 Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D +LR A LG I G ++++D +F +FC+GK Sbjct: 415 DACEVDLRGAYDDLGFIIGEAVSDEIMDKVFKEFCVGK 452 >gi|284931758|gb|ADC31696.1| tRNA modification GTPase MnmE [Mycoplasma gallisepticum str. F] Length = 453 Score = 192 bits (488), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 148/452 (32%), Positives = 246/452 (54%), Gaps = 25/452 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLDGRILDK 63 ETI+A++T SAI +IRLSGP F++ IC K+ K R + R + +++D Sbjct: 10 ETIYALATAPYNSAIHVIRLSGPDAFEIINKICDKQINKEGYRIQNARIVD--NDQVIDD 67 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 LL+ F +P+SFTGEDS E + HGG+ V+N I+ L K LA GEFS+R++ N KI Sbjct: 68 VLLMKFVAPKSFTGEDSIEINCHGGLFVINKIMALLNKHG-AHLAQRGEFSKRSYINKKI 126 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL +A ++ DLI ++ + S++ +SGE S ++ + +E +D+ E ED Sbjct: 127 DLNQATAIHDLIFAKNNLSHSASIKALSGEFSKDIKNIQQEIFKLIGLVEIAIDYPEYED 186 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 + ++E N + ++ + +++ + I G KI I+G NAGKSSL N+L + Sbjct: 187 EKKELTEEFKN-LTNIRQKLQRIVNKSLKLKQISEGIKIAIVGEPNAGKSSLLNSLLNEQ 245 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 AIVT+IPGTTRD + + L L + + DTAGIR++ D +E+ GI ++F ++ +DL+ Sbjct: 246 KAIVTNIPGTTRDTVEGQIVLNDQLIINLIDTAGIRKSSDQIEQIGINKSFKTIDKSDLV 305 Query: 303 LLLKEINSKKEIS--------FPKNIDFIFIGTKSDLY--STYTEEYDHLISSFTGEGLE 352 + L ++N + K F+ +G K D + T E IS+ + + Sbjct: 306 IYLIDLNKYQNYDKTNIYKYLINKKKQFVLVGNKVDEVDPTLNTGEIQIKISAKNND-IS 364 Query: 353 ELINKIK----SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAEN 408 +LI ++ +I +++ K+ SI + + +L QT Y LN+ + D++ ++ Sbjct: 365 DLIKYLEETSLAIFNDENKQ--DSIFQEEWQI-NLLQTALYNINLILNDLNQYHDLVIQH 421 Query: 409 LRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L A+ SL K+ + L+D IF FC+GK Sbjct: 422 LNEANNSLLKVLSEYEDYNLIDEIFKNFCLGK 453 >gi|167766870|ref|ZP_02438923.1| hypothetical protein CLOSS21_01387 [Clostridium sp. SS2/1] gi|317499289|ref|ZP_07957562.1| tRNA modification GTPase TrmE [Lachnospiraceae bacterium 5_1_63FAA] gi|167711418|gb|EDS21997.1| hypothetical protein CLOSS21_01387 [Clostridium sp. SS2/1] gi|291558409|emb|CBL37209.1| tRNA modification GTPase trmE [butyrate-producing bacterium SSC/2] gi|316893458|gb|EFV15667.1| tRNA modification GTPase TrmE [Lachnospiraceae bacterium 5_1_63FAA] Length = 458 Score = 192 bits (488), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 151/458 (32%), Positives = 235/458 (51%), Gaps = 28/458 (6%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI------ 60 TI A++T S I IIR+SG + E + K KK + ++ + G + Sbjct: 5 TIAAIATPMTNSGIGIIRISGDEALDIIEKVFKPKKKDKKIKDVKTYTAHYGHVYDESTL 64 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+ +++V P S+T ED E + HGG+ V+ +LE + K A PGEF++RAF N Sbjct: 65 LDECIVLVMKGPHSYTAEDVVEINCHGGVVVMKKVLEAVFK-AGATPAEPGEFTKRAFLN 123 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G+IDL EAE++ DLI S+ E S++ + G L + ++ H +FIE+ LD E Sbjct: 124 GRIDLSEAEAVMDLIQSKNEFAMSTSLKQLEGALGKKITEIRKQIIHSVAFIESALDDPE 183 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 V FS E+ + + + N ++ + G I++ G + VI+G NAGKSS+ N L Sbjct: 184 HYSVDGFSD-ELKDQVEVIINQLNEFLENADNGRILKEGIQTVIVGKPNAGKSSVLNVLL 242 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRD L + ++G + I DTAGIR+T+D++EK G+ + + AD Sbjct: 243 GEERAIVTDIAGTTRDTLEESIQIKGIPLNIIDTAGIRDTNDLIEKIGVDKAKDLLTKAD 302 Query: 301 LIL---------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISS 345 L+L +++ I K+ I D + SDL E+ IS+ Sbjct: 303 LVLYVVDTSDPLTKDDEEIMELIEDKQTIVLLNKADLDQVVKVSDLKEKGFEQIVQ-ISA 361 Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIP-SHKRHLYHLSQTVRYLEMASLNEKDCGL-- 402 G+EEL I+ I I ++ RH +S+ ++ L M L + G+ Sbjct: 362 KEQTGIEELYQLIQDIFFEGHVSFNDEIYLTNMRHKTEVSEALKSLAMV-LQSIEDGMPE 420 Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D + +L A LG ITG E L++ IF++FC+GK Sbjct: 421 DFFSIDLLDAYEHLGFITGESVGEDLVNEIFAEFCMGK 458 >gi|309807783|ref|ZP_07701715.1| tRNA modification GTPase TrmE [Lactobacillus iners LactinV 01V1-a] gi|308168885|gb|EFO70971.1| tRNA modification GTPase TrmE [Lactobacillus iners LactinV 01V1-a] Length = 386 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 117/319 (36%), Positives = 194/319 (60%), Gaps = 18/319 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG-----LDGRI 60 +TI A++T ISIIR+SG + ++ I + + AS +G + + Sbjct: 9 DTIAAIATPIGEGGISIIRVSGENALEIVNKIFRGAN-LNKVASHTIHYGHIIDYANKDV 67 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+ L+ V +P++FT E++ E HGG+ V IL+ L R+A PGEF++RAF N Sbjct: 68 VDEVLVTVMLAPKTFTRENTVEVSCHGGLLVTQKILQ-LILDNGARMATPGEFTKRAFIN 126 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFIEADL 176 G+IDL +AES+ D+I ++T+ R+++M + G E+ L + ++ + H E ++ Sbjct: 127 GRIDLTQAESIMDIIEAKTDRARQVAMNQLEGGLLFEIRKLRQELLNTMAHE----EVNI 182 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D+ E D+ + +SKE+ + + +I ++ + G+++R+G I+G N GKSSL Sbjct: 183 DYPEY-DMDDVTSKEMYDKAQQVIKEIDKLLATAQEGKVVRSGLATAIVGRPNVGKSSLL 241 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N L+K++ AIVT+I GTTRD L + L+G L+K+ DTAGIR+TDDIVEK G++R+ + Sbjct: 242 NYLSKEEKAIVTNIAGTTRDTLEEYVSLKGILLKLIDTAGIRQTDDIVEKIGVERSKRAI 301 Query: 297 ENADLILLLKEINSKKEIS 315 +DL+LLL INS +E++ Sbjct: 302 TESDLVLLL--INSSEELT 318 >gi|83319722|ref|YP_424766.1| tRNA modification GTPase TrmE [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|123535480|sp|Q2SR47|MNME_MYCCT RecName: Full=tRNA modification GTPase mnmE gi|83283608|gb|ABC01540.1| tRNA modification GTPase TrmE [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 452 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 135/449 (30%), Positives = 243/449 (54%), Gaps = 15/449 (3%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +T+ A +T AI++IR+SG F + + K KK ++ + ++D+ + Sbjct: 5 DTVVAPATNISTQAIALIRVSGSEAFLIVNKLIKDKKLEEKRGLFLRKLYFEDELIDEVV 64 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 L F +P SFTGE+ E HGGI N I+ L + R+A GEFS+R+F NGKIDL Sbjct: 65 LSCFVAPNSFTGENVVEIACHGGILNTNKIINILIQ-SGARMALRGEFSQRSFLNGKIDL 123 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 ++AE + +LI ++ ++ ++ + MSG + + D L I S I+ +D+ + +DV+ Sbjct: 124 IQAEGINNLIHAKNDLALKIGVANMSGSNNKAIIELKDNLLDIISRIQVSIDYPDYDDVE 183 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S +++ N + + + I+ + + K+ G K I+G +N GKSS+ NAL +D A Sbjct: 184 GSSIEDLTNLLEIINDQINKLLMRSKMAFKNSEGIKTAIVGQTNVGKSSILNALINEDKA 243 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL- 304 IVTDIPGTTRD++ ++LE + + DTAGIR+T D+VE GI ++ + ADL+L Sbjct: 244 IVTDIPGTTRDIVEGQINLENVSLNLIDTAGIRKTSDVVENLGILKSKNLINEADLVLFV 303 Query: 305 -----LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEE-----YDHLI-SSFTGEGLEE 353 + ++++++ K+ +I I K++ S ++ Y++++ +S +++ Sbjct: 304 VNKENINDLDNQEIFELLKDKTYILIVNKAEKLSQTEKQNLEKKYENIVFTSAINHDIDQ 363 Query: 354 LINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDIIAENLRL 411 L+ +I + L+ + K I + + Q L A S+ + +DI+ +L Sbjct: 364 LVLRINQMYLNEEISKSDELILIGLNQITLVEQIKNKLSTALSVIKSGMPIDIVNVDLYD 423 Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A L ++ G ++++D IF K+C+GK Sbjct: 424 AWNLLNELIGVEYEDEIIDNIFRKYCLGK 452 >gi|57167879|ref|ZP_00367019.1| tRNA modification GTPase TrmE [Campylobacter coli RM2228] gi|305432095|ref|ZP_07401262.1| tRNA modification GTPase TrmE [Campylobacter coli JV20] gi|57021001|gb|EAL57665.1| tRNA modification GTPase TrmE [Campylobacter coli RM2228] gi|304445179|gb|EFM37825.1| tRNA modification GTPase TrmE [Campylobacter coli JV20] Length = 442 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 152/473 (32%), Positives = 231/473 (48%), Gaps = 71/473 (15%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A++T +ISIIRLSG ++ + KK + PR A+ F LD+ + Sbjct: 3 DTIVAIATAHGVGSISIIRLSGERALEIALKLSKKNELCPRYATFTKLFNQKNEFLDEAI 62 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 +I F +P SFTGED EF VHGG +V +LEEL + RLA PGEFS+RA GK+ Sbjct: 63 VIYFKAPFSFTGEDIVEFQVHGGFSVSEILLEELISL-GARLAEPGEFSKRACLRGKMSP 121 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE---- 181 L+A ++ DLI +++ ++ M G L L + L +F+E +D++++ Sbjct: 122 LKALNIQDLILAKSANAAKIIARNMQGSLGELLDKIRTDLVKTLAFVETSIDYADDDLPS 181 Query: 182 ---EDVQNFS--SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 E + + ++L +I L S+ K G I G+KI I+G N GKSSL Sbjct: 182 DLLEQISTMCEENSKILKEIYTL--------SESKKGLI--EGFKIAIVGKPNVGKSSLL 231 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 NAL AIV+DI GTTRD + L +L++I DTAGIRE+ D +E+ GI+ + + Sbjct: 232 NALLSYKRAIVSDIAGTTRDTIEESFKLGTHLLRIIDTAGIRESKDEIEQIGIELSKKSI 291 Query: 297 ENADLIL-----------------------------LLKEINSKKEISFPKNIDFIFIGT 327 E+AD+IL LL + + K + P +IDFI + Sbjct: 292 EDADIILAIFDNSRKKDEEDENIFKLLSQSDKKIFYLLNKSDLKTQFDKPCDIDFIELSV 351 Query: 328 KSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV 387 ++D+ E+ + ++S +G L++ I I + K + Sbjct: 352 QNDI-QILKEKLEKYLNSLDSDGF--LVSSIALINACKISS---------------EAIL 393 Query: 388 RYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 R E+ S N L++ A L LA L K T D ++LD +F FC+GK Sbjct: 394 RAKELLSEN----SLELFAFELNLAIGELAKFTKDFDRNEILDEMFGNFCLGK 442 >gi|258406257|ref|YP_003198999.1| tRNA modification GTPase TrmE [Desulfohalobium retbaense DSM 5692] gi|257798484|gb|ACV69421.1| tRNA modification GTPase TrmE [Desulfohalobium retbaense DSM 5692] Length = 461 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 139/464 (29%), Positives = 242/464 (52%), Gaps = 31/464 (6%) Query: 2 NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKK-----KPFPRKASLRYFF 54 ETI A++T + I+RLSGP V + F+ ++ KP+ + + Sbjct: 4 GQSTETIGAIATPLGSGGVGIVRLSGPKSLTVAQRLFLSARQTFEAFKPY--RLHHGWVT 61 Query: 55 GLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114 + G LD+ L+ P P S++GED E + HGG AVV +LE + + +RLA PGEF+ Sbjct: 62 DVHGARLDEVLVSFMPGPGSYSGEDIVEINCHGGPAVVQAVLEAVLEC-GVRLARPGEFT 120 Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174 RA+ NG++DL +AE++A++I++ T RL+ ++G L +L +R + Sbjct: 121 LRAYLNGRLDLTQAEAVAEMINAPTASSLRLAGSKLAGGLGRYIRDLRQRLESLRVQMCV 180 Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234 +DF EEE ++ + +E+ + + DI + ++ + R+G +V+ G NAGKSS Sbjct: 181 AVDFPEEE-IECLAPEELQAGLEQVLVDIEAIMANFERDRYWRDGALVVLAGRVNAGKSS 239 Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294 L NA+ ++ AIVT I GTTRD L ++L G V++ DTAG+RETDD+VE+ G+ R+ Sbjct: 240 LMNAILGRERAIVTPIAGTTRDYLEEQVNLSGLPVRLVDTAGLRETDDLVERAGLSRSRE 299 Query: 295 EVENADLILLLKE------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLIS---- 344 +E ADL+ ++ + + + + N + + K DL +TE + + + Sbjct: 300 LLEQADLVCVVLDSSQALTADDRALLQEAPNETTLVVLNKQDL-PPHTETQEAVAAQGLP 358 Query: 345 -----SFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398 + +G++ LI ++ ++ + + + + R L+Q L A +E Sbjct: 359 TVPAVAVEADGVDALIRAVRQRLVGERQEPEQGELVPNLRQSQGLAQAREELR-ALYDEC 417 Query: 399 DCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G+ D+++ L A L +I G + +L+ +F +FCIGK Sbjct: 418 RNGVPYDLLSVRLETACTILSEIIGEMTPAAVLEQVFGEFCIGK 461 >gi|260911951|ref|ZP_05918515.1| thiophene and furan oxidation protein ThdF [Prevotella sp. oral taxon 472 str. F0295] gi|260633898|gb|EEX52024.1| thiophene and furan oxidation protein ThdF [Prevotella sp. oral taxon 472 str. F0295] Length = 460 Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 151/463 (32%), Positives = 249/463 (53%), Gaps = 33/463 (7%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-----PFPRKASLRYFFGLD 57 ++++TI A++T A A+ +IR+SG + + K K P + ++Y +D Sbjct: 6 NDRQTICALATSA-GGALGVIRVSGSDAIDIVDRAFKAPKGKSLHTLPAQM-VQYGHIVD 63 Query: 58 GRI--LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 R +D+ L+ F +P S+TGE+S E HG ++N +L+ L ++ R A PGEF++ Sbjct: 64 ERAHPIDEVLVTCFHAPHSYTGENSVEISCHGSAYILNEVLKLLVRL-GCRQAQPGEFTQ 122 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NGK+DL +AE++ADLI++ +L++ + G S DKL HI S IE + Sbjct: 123 RAFLNGKMDLSQAEAVADLIAATNRASAQLALGQLRGHFSGELATLRDKLLHITSLIELE 182 Query: 176 LDFSEEEDVQNFSSKEVLNDILF-LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234 LDFS++ DV F+ ++ L + ++ I+S + + G I+ G + I+G +N GKS+ Sbjct: 183 LDFSDQ-DV-TFADRQELQALAEEIRTKIASLATSFETGRAIKAGISVAIVGKTNVGKST 240 Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294 L N L K++ AIV+DI GTTRDV+ + + G + DTAGIR+T D +E GI+RT+ Sbjct: 241 LLNRLLKEERAIVSDIHGTTRDVIEDTIQINGINFRFIDTAGIRKTSDEIESLGIERTYQ 300 Query: 295 EVENADLIL-LLKEINSKKEI----SFPKNIDFIFIGTKSDLYS------TYTEE--YDH 341 ++ A ++L ++ + S EI + + I + K+D S ++TE+ + Sbjct: 301 KLTEAAVVLWVIDKAPSLSEIEEMDAHTRGKRLIVVSNKNDEQSFVFPTFSWTEQPTFVS 360 Query: 342 LISSFTG--EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH-LSQTVRYLEMASLNEK 398 + + F E LE I +I + + H L H L+ R L+ +L Sbjct: 361 VSAKFNTNIETLETSIYNAANIPEIHENDVVVTNVRHYEALTHALASIQRVLDGIAL--- 417 Query: 399 DCGLDIIAENLRLASVSLGKIT-GCVDVEQLLDIIFSKFCIGK 440 D D+++E+LR L +IT G + ++L IF FCIGK Sbjct: 418 DLSGDLLSEDLRQCLHFLAEITGGGITSNEVLGNIFKHFCIGK 460 >gi|294101372|ref|YP_003553230.1| tRNA modification GTPase TrmE [Aminobacterium colombiense DSM 12261] gi|293616352|gb|ADE56506.1| tRNA modification GTPase TrmE [Aminobacterium colombiense DSM 12261] Length = 455 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 141/457 (30%), Positives = 231/457 (50%), Gaps = 25/457 (5%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF----PRKASLRYFFGLDGRI 60 ++ I A+ST + I+I+RLSG + ++ + + +P PR Y Sbjct: 3 EDIIAAISTAWGEAGIAIVRLSGFNSRELADEVVHGIRPLSETPPRVLRNGYLLDEKKEP 62 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+ L F +P+S+TGE+ E HGG V LE L RLA PGEF+RRAF N Sbjct: 63 IDQVLFSWFRAPKSYTGEEMVEISTHGGTLVAQKCLESLIG-KGARLAEPGEFTRRAFLN 121 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GKIDL +AE++ +I S++E R + + GELSS +++ I S IE LDF E Sbjct: 122 GKIDLSQAEAVLGIIRSKSEEALRAATRTLRGELSSFAKDIYNEMLTISSSIEVGLDFPE 181 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E D+ ++ V + + LK + + + G ++R G ++ ++G N GKSSL NAL Sbjct: 182 E-DIPFIENEGVESALYTLKQGLEDLLDRCNTGFLLREGIRVALVGRPNVGKSSLLNALL 240 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 K+ AIVT IPGTTRD++ L G +++ DTAGI D +E GI R + AD Sbjct: 241 KESRAIVTAIPGTTRDLIEEVLTYRGIPIRLVDTAGIGAPGDEIEAMGIARAEKAMMEAD 300 Query: 301 L---------------ILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISS 345 + + L+++I++ I D + ++ + + +IS+ Sbjct: 301 VRIWVIDGSEPLTPADLALVQKISATNHIVTINKADLPLVISEEMINGLLPQSPVFVISA 360 Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL--EMASLNEKDCGLD 403 EG+E L + I + ++ L + + R + + + ++ L +++LNE G D Sbjct: 361 EKREGIEALKDAIVTNIAGG-GTLTSGLNASSRQVEEIRKAIQALGQGISALNE-GMGQD 418 Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++A L + ++ G + LL+ IFS+FC+GK Sbjct: 419 VVAACLYDGRTCMERLLGLSVDDALLETIFSQFCVGK 455 >gi|304383244|ref|ZP_07365715.1| tRNA modification GTPase TrmE [Prevotella marshii DSM 16973] gi|304335626|gb|EFM01885.1| tRNA modification GTPase TrmE [Prevotella marshii DSM 16973] Length = 460 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 147/464 (31%), Positives = 240/464 (51%), Gaps = 35/464 (7%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL---- 56 ++ TI A++T A A+ +IR+SG + + + F+ K+ + +G Sbjct: 6 NDHHTICAMAT-ASGGAMGVIRVSGDNAIAIVDKTFVPASKQSLQDAKAQSVLYGYIQAE 64 Query: 57 DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 D ++D+ L+ VF +P S+TGED+ E HG ++ +LE L ++ R A PGEF++R Sbjct: 65 DRTVIDEVLVSVFRAPHSYTGEDTVEISCHGSAYIIKEVLERLIRL-GCRQALPGEFTQR 123 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NGK+DL +AE++ADLISS + +L++ + G S DKL I S IE +L Sbjct: 124 AFLNGKMDLSQAEAVADLISSTNKATHQLALGQLRGHFSDELRALRDKLLKITSLIELEL 183 Query: 177 DFSEEEDVQNFSSKEVLNDIL-FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 DFS++ DV F+++E L + +K I+ + G +++G + I+G +N GKS+L Sbjct: 184 DFSDQ-DV-TFANREELQQLAQHIKEKITRLAQSFQTGRALKSGVSVAIVGKTNVGKSTL 241 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N L K++ AIV++I GTTRDV+ + + G + DTAGIRET+D +E GI+RT+ + Sbjct: 242 LNRLLKEERAIVSEIHGTTRDVIEDTMQIRGVTFRFIDTAGIRETNDKIESLGIERTYRK 301 Query: 296 VENADLILLLKEINSK-KEI----SFPKNIDFIFIGTKSDLYSTYTEEYDHLIS-SFTG- 348 + A +++ + + + EI + K I + K D +Y I +F Sbjct: 302 LSEAAIVIWMIDASPTFSEIQEMEARVKGKKLIVVANKMDEKEVVLADYPWTIQPAFLAV 361 Query: 349 --------EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV-RYLEMASLNEKD 399 + LE I I + + H L H +++ R +E Sbjct: 362 SAKYNRNIDLLEATIYHAADIPEIHENDVIVTNARHYEALLHAQESIGRVIEGIV----- 416 Query: 400 CGL--DIIAENLRLASVSLGKIT-GCVDVEQLLDIIFSKFCIGK 440 GL D+++E+LR L +IT G + +L+ IF FCIGK Sbjct: 417 TGLSGDLLSEDLRQCIHQLSEITGGTITTSDVLNSIFKDFCIGK 460 >gi|282856945|ref|ZP_06266200.1| tRNA modification GTPase TrmE [Pyramidobacter piscolens W5455] gi|282585236|gb|EFB90549.1| tRNA modification GTPase TrmE [Pyramidobacter piscolens W5455] Length = 455 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 147/459 (32%), Positives = 233/459 (50%), Gaps = 31/459 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASL-RYFFGLD--GRILD 62 +TI A+ST S I+I+RLSGP + + + + + P K R LD G ++D Sbjct: 4 DTIAAISTAWGNSGIAIVRLSGPDSWAIAQRQVRLQTEAPLKVRFARNAVLLDESGEVID 63 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 L++ F P S+TGED E H HGG LE L R+A PGE++RRAFENG+ Sbjct: 64 HILVLPFRGPRSYTGEDLVELHCHGGSLAAQRCLELLIS-GGARMALPGEYTRRAFENGR 122 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 +DL +AE++ LI + + R + + GEL+ + ++LT + + IE LDF EE Sbjct: 123 LDLSQAEAVGALIQARSNEALRAANRTLDGELTRAVSEIYEELTSLGAEIEVGLDFPEE- 181 Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 DV + + + + ++ ++ + + G I+R G ++ I+G NAGKSSL NAL K+ Sbjct: 182 DVPYIADESLAGRLEIVRQSLADLLERCSSGVILREGIRVAIVGRPNAGKSSLLNALLKE 241 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET-DDIVEKEGIKRTFLEVENADL 301 AIVT IPGTTRDV+ L G +++ DTAGI E D VE G++R ++ AD+ Sbjct: 242 SRAIVTAIPGTTRDVIEAVLTYRGIPLRLVDTAGITENYHDEVEAIGVERARAAMKEADV 301 Query: 302 ILLL---------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEE-------YDHLISS 345 + + ++++ E++ + + + K+DL +E +IS Sbjct: 302 CVWVIDGSEPLHQEDVDRVHELA---DTPHLVVLNKADLPQQISEASLTALIPASTVISV 358 Query: 346 FTGEG--LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLD 403 +G L+EL + ++S L + + R + L + + L GLD Sbjct: 359 SAAKGLRLDELKESLVGLVSGT-GALDTGLNASSRQVEELRGAIASVGTG-LKALGDGLD 416 Query: 404 --IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++ + A SL +I G E LL IF +FCIGK Sbjct: 417 QALVSSCVGDARRSLSRILGGDRDEDLLHEIFGRFCIGK 455 >gi|331703092|ref|YP_004399779.1| tRNA modification GTPase [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328801647|emb|CBW53800.1| tRNA modification GTPase [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 452 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 135/449 (30%), Positives = 242/449 (53%), Gaps = 15/449 (3%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +T+ A +T AI++IR+SG F + + K KK ++ ++D+ + Sbjct: 5 DTVVAPATNISTQAIALIRVSGSEAFLIVNKLIKDKKLEEKRGLFLRKLYFKNELIDEVV 64 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 L F +P SFTGE+ E HGGI N I+ L + R+A GEFS+R+F NGKIDL Sbjct: 65 LSCFVAPNSFTGENVVEIACHGGILNTNKIINILIQ-SGARMALRGEFSQRSFLNGKIDL 123 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 ++AE + +LI ++ ++ ++ + MSG + + D L I S I+ +D+ + +DV+ Sbjct: 124 IQAEGINNLIHAKNDLALKIGVANMSGSNNKAIIELKDNLLDIISRIQVSIDYPDYDDVE 183 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S +++ N + + + I+ + + K+ G K I+G +N GKSS+ NAL +D A Sbjct: 184 GSSIEDLTNLLEVINDQINKLLMRSKMAFKNSEGIKTAIVGQTNVGKSSILNALINEDKA 243 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL- 304 IVTDIPGTTRD++ ++LE + + DTAGIR+T D+VE GI ++ + ADL+L Sbjct: 244 IVTDIPGTTRDIVEGQINLENVSLNLIDTAGIRKTSDVVENLGILKSKNLINEADLVLFV 303 Query: 305 -----LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEE-----YDHLI-SSFTGEGLEE 353 + ++++++ K+ +I I K++ S ++ Y++++ +S +++ Sbjct: 304 VNKENINDLDNQEIFDLLKDKTYILIVNKAEKLSQTEKQNLEKKYENIVFTSAINHDIDQ 363 Query: 354 LINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDIIAENLRL 411 L+ +I + L+ + K I + + Q L A S+ + +DI+ +L Sbjct: 364 LVLRINQMFLNEEISKNDELILIGLNQITLVEQIKNKLSTALSVIKSGMPIDIVNVDLYD 423 Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A L ++ G ++++D IF K+C+GK Sbjct: 424 AWNLLNELIGVEYEDEIIDNIFRKYCLGK 452 >gi|282889533|ref|ZP_06298075.1| hypothetical protein pah_c001o004 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500546|gb|EFB42823.1| hypothetical protein pah_c001o004 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 476 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 144/458 (31%), Positives = 227/458 (49%), Gaps = 35/458 (7%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRY--FFGLDGRILDK 63 +TI A++T ++IIR+SG + +V + +++Y +G +D Sbjct: 31 DTIAAIATPPGEGGVAIIRISGNAAIEVASRCFSRPVEGLPTHTVQYGKIKNREGECVDH 90 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 LL+ +P S+TGE + E H HGG + +L+ + + R A PGEF+ +AF NGK+ Sbjct: 91 VLLLPMHAPRSYTGEHTVEIHCHGGSLIARRVLQTVLEA-GARAARPGEFTFKAFMNGKL 149 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL +AE++ +LI ++ E + + G L+ + L I + +EA +DF EE Sbjct: 150 DLAQAEAVQELIGAKNEKALHAAGSQLQGALTRKISTFQHGLNDIAAILEAWVDFPEEG- 208 Query: 184 VQNFSSKE----VLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 F++ E L + + +++ GK I+R+G + ++G N GKSSL NAL Sbjct: 209 -LEFATMEEIQVTLREAIEAMQKLAATFHNGK---ILRDGVSLCLIGCPNVGKSSLMNAL 264 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 KD AIV+ I GTTRD+L L L G ++ DTAGIR++D+IVE EGI+R+ ++ A Sbjct: 265 LGKDRAIVSAIAGTTRDILEDHLKLNGLNFRLLDTAGIRDSDEIVEAEGIRRSRQAIQEA 324 Query: 300 DLI---------------LLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLIS 344 DLI LL+++I +K I ID +ST +S Sbjct: 325 DLILFVLDSSRGLQADDHLLMQQIPHEKTIGVWNKIDIQKPEMTPLPFSTVC------VS 378 Query: 345 SFTGEGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGL 402 + +GL+ L I + I N + + RHL L+Q + + + D Sbjct: 379 AQERQGLDTLHETIDQVIWKNGMPDQQEVVITSMRHLQALTQAILFAQNVHDGLTDNLSP 438 Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + + ++R LGKI G E +L IFSKFCIGK Sbjct: 439 EFLCVDMRQCLRELGKIIGTNVTEDILSSIFSKFCIGK 476 >gi|11465467|ref|NP_045142.1| thiophen and furan oxidation protein [Cyanidium caldarium] gi|14195300|sp|Q9TLX6|MNME_CYACA RecName: Full=Probable tRNA modification GTPase mnmE gi|6466370|gb|AAF12952.1|AF022186_75 unknown [Cyanidium caldarium] Length = 465 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 155/473 (32%), Positives = 246/473 (52%), Gaps = 44/473 (9%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFI--CKKKKPFPRKASLRYFF--GLDG 58 ++++TI A++T +SI+RLSG V + + + + L + D Sbjct: 2 YKRDTIAAIATCPNGGGVSILRLSGSKSIDVVKTVSLVSSNQCWHSHCILYGWIKDNEDQ 61 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 +D+ L+++ +P S+T E+ E H H I + N IL L K +RLA PGEF+ RAF Sbjct: 62 SFVDEVLILLMMAPRSYTAENVVEIHCHASIVLANEILRILVK-QGVRLAKPGEFTMRAF 120 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL-- 176 NG+I L + ES+ +I S+T +L+ + L + I +L H S + ADL Sbjct: 121 LNGRIGLSQVESVLKVIHSKTIASAKLA----ANTLRRGGSERIRRLKHTLSLLLADLEF 176 Query: 177 --DFSEE----EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNA 230 DFS+E + +++ + + +L +K+ ISS+ KL E G K+ I+G N Sbjct: 177 HIDFSDEFIDVDSIEDELRSTIQSSLLDIKDLISSYNKVSKLNE----GTKVCIIGKPNV 232 Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIK 290 GKSSL NA+AK++ +IVT+ PGTTRD+++ + L LV++ DTAGIR++ D +EK GI Sbjct: 233 GKSSLLNAIAKRECSIVTNFPGTTRDIVSFETMLGNTLVRLYDTAGIRQSVDEIEKIGIS 292 Query: 291 RTFLEVENADLILL----LKEINSKKEISFPK----NIDFIFIGTKSD--LYSTYTEEYD 340 +T L V+ ++ ++ ++S+ + F K N +F+ + K D + E Y+ Sbjct: 293 KTELFVDECQIVFFVLDAIQGLSSEDSVIFNKLNLMNKNFVILINKIDKKVQRKIDEIYE 352 Query: 341 HL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391 L +S+ GLE+L N I + S + LP + ++L L+ L+ Sbjct: 353 TLKCSNRRIIEVSAIKNIGLEKLNNCILDLSSKEDFDLPVHFSVNCKYLEILNNIYLILD 412 Query: 392 ---MASLNEKDCGLDIIAENLRLASVSLGKITGCVDVE-QLLDIIFSKFCIGK 440 SLN+ D IA LR L +ITG VE +LD IFSKFC+GK Sbjct: 413 ELYTGSLNKSVTSYDFIAVELRRVLQGLNQITGDEVVENNVLDAIFSKFCVGK 465 >gi|313896881|ref|ZP_07830428.1| tRNA modification GTPase TrmE [Selenomonas sp. oral taxon 137 str. F0430] gi|312974328|gb|EFR39796.1| tRNA modification GTPase TrmE [Selenomonas sp. oral taxon 137 str. F0430] Length = 461 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 150/463 (32%), Positives = 236/463 (50%), Gaps = 25/463 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF------PRKASLRYFF 54 M E++TI ++T I I+R+SG V + + + P A + Sbjct: 1 MRGERDTISQIATPPGAGGIGIVRVSGADALHVARAVFRPARGGRLEGIEPYTARYGHIT 60 Query: 55 GLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114 DG ++D+ +L+ +P S+TGED+AE HGG V+ +L + R A GEF+ Sbjct: 61 AADGTVIDECVLLYMRAPHSYTGEDTAELQCHGGTLVLREVLLRTWEA-GARPAEAGEFT 119 Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174 +RAF NG++DL AE + +LIS+++ R + E M+G L+ +L + IEA Sbjct: 120 KRAFLNGRLDLSRAEGVMELISAKSARAVRAARERMAGALAEKIAGIRTRLLGAIAHIEA 179 Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234 +DF E+ D+ + + DI D++ + G I+R G K VI+G N GKSS Sbjct: 180 GIDFPED-DIPEARTGALAADIAAASADVARLLEGADAGRILREGMKTVIVGRPNVGKSS 238 Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294 L NAL + AIVTD+PGTTRDV+ + +EG +++ DTAG+R +D VE+ G+ RT Sbjct: 239 LLNALLGMERAIVTDVPGTTRDVIEEQIVIEGIPLRLLDTAGLRAAEDAVEQIGVARTQR 298 Query: 295 EVENADLILLL----KEINSKKE--ISFPKNI--DFIFIGTKSDLYSTYT-EEYDHL--- 342 + +A+L+L + + + E I +N + I + K D S T ++ L Sbjct: 299 HLADAELVLAVFDGAAPLTPEDEDLIVRLRNCAAEMIVLCNKEDRDSVLTAADFSMLDAP 358 Query: 343 ---ISSFTGEGLEELINKIKSILSNKFKKL-PFSIPSHKRHLYHLSQTVRYLEMASLN-E 397 IS+ G GL++L I I+ L ++P+ +R L + +L+ A Sbjct: 359 VLVISAQAGTGLDDLRRAIAEIVRRMEGDLGDGALPNVERETEALRRAAEHLQAAQETLA 418 Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D G D ++ +L A LG+I G L+D IFS+FCIGK Sbjct: 419 GDMGTDFVSIDLHAAYEILGEILGETADTDLIDKIFSEFCIGK 461 >gi|269836202|ref|YP_003318430.1| tRNA modification GTPase TrmE [Sphaerobacter thermophilus DSM 20745] gi|269785465|gb|ACZ37608.1| tRNA modification GTPase TrmE [Sphaerobacter thermophilus DSM 20745] Length = 466 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 136/470 (28%), Positives = 236/470 (50%), Gaps = 42/470 (8%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF-----PRKASLRYFFGL---- 56 +TI A++T I I+R+SGP Q+ I ++ + + S R ++G Sbjct: 4 DTISAIATPLGEGGIGIVRISGPDADQIASRIFRRGRSLRPVDVAQLESHRLYYGYVVDP 63 Query: 57 -DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 D R++D+ LL +P S+T ED E HGG VV +L L R A PGEF+ Sbjct: 64 RDERVVDEVLLARMAAPRSYTREDVVEISCHGGPLVVREVLR-LTLAAGARQAEPGEFTL 122 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG+IDL +AE++ ++S+ T L++ + G + G + L ++++A Sbjct: 123 RAFLNGRIDLAQAEAVMAVVSARTPDSLDLAVGELRGRMVGRLGPAREALIEALAYLDAS 182 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 DF E+E ++ + + + ++ +LG + R G +I I+G N GKSSL Sbjct: 183 ADFPEDE----VPPLDLTGTLARAEAALDEVVAGARLGLLYREGVQIAIVGRPNVGKSSL 238 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N L + + AIVTDI GTTRDV+ ++L+G + DTAGI +T+DI+E+ GI R+ Sbjct: 239 LNTLLRAERAIVTDIAGTTRDVIAESINLQGIPATLIDTAGIADTEDIIERMGIDRSRRA 298 Query: 296 VENADLILLLKEINS-------------KKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL 342 ++ A L + + + + ++ ++ + + + K DL + ++D + Sbjct: 299 LDTAGLAIFVLDGSMPPTPDDFRVAELLQRRVASDGHDRLVLVLNKRDLPDRH--DHDEI 356 Query: 343 -----------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391 +S+ TGEG+ +L + L + + R L++ + + Sbjct: 357 RALLPGAPVVEVSTRTGEGIAQLEATLAEALIARAAEGAAPALVTLRQQQALTRALESIR 416 Query: 392 MASLN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A + + LD++A ++R A +++G+ITG E +LD IF++FCIGK Sbjct: 417 QARAALDAEIPLDLVAVDVRDALLAVGEITGEQVSETILDEIFARFCIGK 466 >gi|256383901|gb|ACU78471.1| tRNA modification GTPase TrmE [Mycoplasma mycoides subsp. capri str. GM12] gi|256384732|gb|ACU79301.1| tRNA modification GTPase TrmE [Mycoplasma mycoides subsp. capri str. GM12] gi|296455373|gb|ADH21608.1| tRNA modification GTPase TrmE [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 452 Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 139/449 (30%), Positives = 243/449 (54%), Gaps = 15/449 (3%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +T+ A +T AI++IR+SG F + + K KK ++ + ++D+ + Sbjct: 5 DTVVAPATNISTQAIALIRVSGSEAFLIVNKLIKDKKLEEKRGLFLRKLYFENELIDEVV 64 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 L F +P SFTGE+ E HGGI N I+ L + R+A GEFS+R+F NGKIDL Sbjct: 65 LSCFVAPNSFTGENVVEIACHGGILNTNKIINILIQ-SGARMALRGEFSQRSFLNGKIDL 123 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 ++AE + +LI ++ ++ ++ + MSG + + D L I S I+ +D+ + +DV+ Sbjct: 124 IQAEGINNLIHAKNDLALKIGVANMSGSNNKAIIELKDNLLDIISRIQVSIDYPDYDDVE 183 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S +++ N + + + I+ + + K+ G K I+G +N GKSS+ NAL +D A Sbjct: 184 GSSIEDLTNLLEVINDQINKLLMRSKMAFKNSEGIKTAIIGQTNVGKSSILNALINEDKA 243 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTDIPGTTRD++ ++LE + + DTAGIR+T D+VE GI ++ + ADL+L + Sbjct: 244 IVTDIPGTTRDIVEGQINLENVSLNLIDTAGIRKTSDVVENLGILKSKNLINEADLVLFV 303 Query: 306 ---KEIN--SKKEI-SFPKNIDFIFIGTKSDLYSTYTEE-----YDHLI-SSFTGEGLEE 353 + IN +EI K+ +I I K++ S ++ Y++++ +S +++ Sbjct: 304 VNKENINDSDNQEIFELLKDKTYILIVNKAEKLSQTEKQNLEKKYENIVFTSAINHDIDQ 363 Query: 354 LINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SLNEKDCGLDIIAENLRL 411 L+ +I + L+ + K I + + Q L A S+ + +DI+ +L Sbjct: 364 LVLRINQMFLNEEISKNDELILIGLNQITLVEQIKNKLSTALSVIKSGMPIDIVNVDLYD 423 Query: 412 ASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A L ++ G ++++D IF K+C+GK Sbjct: 424 AWNLLNELIGVEYEDEIIDNIFRKYCLGK 452 >gi|237724699|ref|ZP_04555180.1| tRNA modification GTPase mnmE [Bacteroides sp. D4] gi|229436894|gb|EEO46971.1| tRNA modification GTPase mnmE [Bacteroides dorei 5_1_36/D4] Length = 498 Score = 190 bits (483), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 157/506 (31%), Positives = 255/506 (50%), Gaps = 81/506 (16%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFI--------CKKKKPF---------PRK 47 ++TI A++T A AI IIR+SGP ++ I ++ P+ P++ Sbjct: 4 QDTICAIAT-AQGGAIGIIRVSGPKAIEITSRIFTPATGKLLTERAPYTLTFGKICSPKR 62 Query: 48 ASLRYFFGLDGRI---------------------LDKGLLIVFPSPESFTGEDSAEFHVH 86 F I +D+ L+ +F +P S+TGEDS E H Sbjct: 63 KINNTLFQKTSEIPQEKSETLQKKESIIPSAEEVIDEVLISLFRAPHSYTGEDSTEIMCH 122 Query: 87 GGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLS 146 G ++ +++ L R A PGE+++RAF NGK+DL +AE++ADLI+S + RL+ Sbjct: 123 GSSYILQQVIQ-LLIYNGCRAALPGEYTQRAFLNGKMDLSQAEAVADLIASSSAATHRLA 181 Query: 147 MEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSH 206 M M G S ++L H S +E +LDFS+ E+++ F++++ L+ + + + Sbjct: 182 MSQMRGGFSKELSNLRNQLLHFTSLMELELDFSDHEELE-FANRDELSSLATHIEQVIAQ 240 Query: 207 ISQG-KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE 265 ++ +G I+NG + I+G +NAGKS+L NAL ++ AIV+DI GTTRDV+ ++L+ Sbjct: 241 LAHSFSVGNAIKNGIPVAIIGETNAGKSTLLNALLNEEKAIVSDIHGTTRDVIEDTINLQ 300 Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS----------KKEIS 315 G + DTAGIR+T+D +E GI+RTF +++ A +IL + I+S K EI Sbjct: 301 GVTFRFIDTAGIRQTNDTIENLGIERTFQKMDQAYVILWM--IDSTDAQRRFEELKAEI- 357 Query: 316 FP--KNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIK-----SILSNKFKK 368 P + I + KSDL +E L + F +E+L K +IL K + Sbjct: 358 LPHCEGKKMIILFNKSDLLLAIQKE--ELSAIFADMKVEKLFISAKKRENITILEKKLVQ 415 Query: 369 LPFSIPSHKR------HLYHLSQTVRYLEMASLNEKDCGL------DIIAENLRLASVSL 416 ++P + ++ H R L+ S++ GL D+++E+LR L Sbjct: 416 AA-ALPEINQNDIIITNVRHYEALTRALD--SIHRVQEGLQLGLSGDLVSEDLRQCIHEL 472 Query: 417 GKIT--GCVDVEQLLDIIFSKFCIGK 440 +I G + E+ L IF FCIGK Sbjct: 473 SEIVAEGGITSEETLQNIFQNFCIGK 498 >gi|313158073|gb|EFR57478.1| tRNA modification GTPase TrmE [Alistipes sp. HGB5] Length = 476 Score = 190 bits (483), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 145/460 (31%), Positives = 230/460 (50%), Gaps = 45/460 (9%) Query: 22 IIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG---LDGRILDKGLLIVFPSPESFTGE 78 +IR+SG + +C+ I + P +G DGR LD L+ VF +P S+TGE Sbjct: 21 VIRVSGGNALTICDRIFRGSAPLADAGGYTVHYGHIMADGRTLDDVLVTVFRAPRSYTGE 80 Query: 79 DSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSE 138 D+AE HG +V L L R+A PGEF+ RA+ GK+DL +AE++AD+I+S Sbjct: 81 DAAEISCHGSQYIVTETLR-LLTAAGARMAQPGEFTIRAYLAGKLDLSQAEAVADIIASS 139 Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILF 198 + L+ M G S+ + +KL H+ S +E +LDFSEEE F+ + L D + Sbjct: 140 SRASHALAANQMRGGYSAAFDTLREKLLHLTSLLELELDFSEEE--VEFADRTQLRDTMR 197 Query: 199 -LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257 +K I + S LG I+ G + I+G N GKS+L N L ++ A+V+DI GTTRD+ Sbjct: 198 QIKERIDALRSSFSLGNAIKEGVAVAIVGAPNVGKSTLLNRLLNEERAMVSDIAGTTRDI 257 Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL------------ 305 + +++G + + DTAGIR T+D +E+ GI RT +E A +I+ L Sbjct: 258 IEERANIDGIVFRFLDTAGIRSTNDTLEQMGIARTMSSIERAQIIIRLIDASQPAVPVSG 317 Query: 306 -----KEINSKKEISFP--------KNIDFIFIGTKSDLYSTYTE----------EYDHL 342 + K + P ++ DF ++ L + Y + E Sbjct: 318 GSPSSGQTGRKSAPAVPSADSAADTQSPDFPLRPDQT-LLTVYNKIDKTPGLALPEGAVG 376 Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CG 401 IS+ G+G+++L ++ + + ++ S+ RH L+ L A +D Sbjct: 377 ISARNGDGIDDLRRILRDAVDTEALYHGGTVISNSRHYEALTSASEALSAALDGLRDNLP 436 Query: 402 LDIIAENLRLASVSLGKITGC-VDVEQLLDIIFSKFCIGK 440 D+++E +R L +TG + E++L IFSKFCIGK Sbjct: 437 TDLLSEEIRQVIRHLSGVTGQDIVPEEVLKTIFSKFCIGK 476 >gi|320354718|ref|YP_004196057.1| tRNA modification GTPase trmE [Desulfobulbus propionicus DSM 2032] gi|320123220|gb|ADW18766.1| tRNA modification GTPase trmE [Desulfobulbus propionicus DSM 2032] Length = 463 Score = 190 bits (483), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 145/468 (30%), Positives = 243/468 (51%), Gaps = 35/468 (7%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---- 56 ++ +TI A++T I IIR+SGP + + KP S + ++G Sbjct: 3 VHRANDTIAAIATAPGTGGIGIIRISGPEALTLLRQLFVSHKPHSHFTSHQLYYGTVMNR 62 Query: 57 DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 G++LD+ L + +P ++T ED E HG V+ IL + + R A+PGEF++R Sbjct: 63 AGQVLDEALAVYMRAPHTYTREDVVELQCHGSYLVLQEILRTVFER-GARPADPGEFTKR 121 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF G+IDL AE++ DL+ ++TE L++ + G L + Q D L I + +E + Sbjct: 122 AFLAGRIDLTRAEAVVDLLQAQTEKGALLAVNQLRGALFAELEQIRDHLLSILAVLEVAI 181 Query: 177 DFSEEEDVQNFSSKEVLNDI-LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 DF +E D + F+++++ + + L + I+ + G+I+R G K+VI G N GKSSL Sbjct: 182 DFPDE-DAEIFAAQQIQDQLQTHLIGPLERLIAMAEQGKIVREGVKVVITGQPNVGKSSL 240 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N L +++ A+VT +PGTTRD + + + G + + DTAGIR D VE GI+R + Sbjct: 241 LNTLLQEERALVTPLPGTTRDTIEERIAIRGIPLHLVDTAGIRLHHDPVEALGIERARQK 300 Query: 296 VENADLILLL-------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTG 348 VE ADL+L L +E + + S N + + K DL + E+ + S F+G Sbjct: 301 VEQADLVLFLVDAQVGWRETDEELYRSL-GNKPHVIVVNKRDLAT--KEQIASIFSRFSG 357 Query: 349 -----------EGLEELINKI-KSILSNK---FKKLPFSIPSHKRHLYHLSQTV-RYLEM 392 EG++EL + ++I+ + +++ + + R + H + T R E Sbjct: 358 KKVVAISAKQQEGIDELQEAVYQAIIGDGAELCERMTCAPNTRHRSILHKTLTACRGFEA 417 Query: 393 ASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A +D++A ++ A LG I G + +LD++FS+FCIGK Sbjct: 418 AM--AMAAPVDLLAVEVQSALDHLGDIVGLTTPDDVLDVVFSQFCIGK 463 >gi|323345523|ref|ZP_08085746.1| thiophene and furan oxidation protein ThdF [Prevotella oralis ATCC 33269] gi|323093637|gb|EFZ36215.1| thiophene and furan oxidation protein ThdF [Prevotella oralis ATCC 33269] Length = 453 Score = 190 bits (483), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 150/458 (32%), Positives = 237/458 (51%), Gaps = 31/458 (6%) Query: 6 ETIFAVSTGALPS--AISIIRLSGPSCFQVCE--FICKKKKPF----PRKASLRYFFGLD 57 ETI A++T PS AI +IR+SGP + F + P Sbjct: 4 ETICALAT---PSGGAIGVIRISGPQAISITANTFHSANGRSLTEANPNTIHYGEIINRK 60 Query: 58 GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 G ++D L+ +F +P S+TGEDS E HG ++N IL L R A GE+++RA Sbjct: 61 GDVIDDVLVSIFRAPHSYTGEDSTEISCHGSHYIINEILHTLIDA-GCRQAKAGEYTQRA 119 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 + NGK+DL +AE++ADLI++ R+++ + G S+ D+L I S IE +LD Sbjct: 120 YLNGKMDLSQAEAVADLIATTNRATHRIALSQLKGNFSNELSILRDQLLKITSLIELELD 179 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 FS++ DV +E+L + + I + + + ++ G + I+G +N GKS+L N Sbjct: 180 FSDQ-DVNFADRQELLELVQKAEQRIGTLATSFETDNALKKGVPVAIVGKTNVGKSTLLN 238 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 L +D AIV+DI GTTRDV+ ++ + DTAGIR TDD +E GI+RT+ ++ Sbjct: 239 RLLHEDKAIVSDIHGTTRDVIEDTTEIHDITFRFIDTAGIRHTDDKIELLGIERTYQKIN 298 Query: 298 NADLIL-LLKEINSKKEIS-FPKNI---DFIFIGTKSDLYS-----TYTEEYDHLISSFT 347 A +IL L+ + + +EIS KNI I + K DL + T + IS+ Sbjct: 299 EATIILWLIDKQPTNEEISEIKKNIRGKKLITVWNKIDLENPPPIPTSLQSPIIYISAKQ 358 Query: 348 GEG---LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV-RYLEMASLNEKDCGLD 403 G LE+ + + I K + + H L H +++ R +E +K+ D Sbjct: 359 GTNIPQLEDALFQAADIPEIKENDIIITSARHYEALTHAHESISRVIEGL---QKNLSGD 415 Query: 404 IIAENLRLASVSLGKITGC-VDVEQLLDIIFSKFCIGK 440 +++E+LR+ L +ITG + ++L+ IFS FCIGK Sbjct: 416 LLSEDLRICIDHLAEITGGQITTNEVLENIFSHFCIGK 453 >gi|297621993|ref|YP_003710130.1| tRNA modification GTPase TrmE [Waddlia chondrophila WSU 86-1044] gi|297377294|gb|ADI39124.1| tRNA modification GTPase TrmE [Waddlia chondrophila WSU 86-1044] Length = 452 Score = 190 bits (483), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 140/452 (30%), Positives = 237/452 (52%), Gaps = 25/452 (5%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRY-FFGLDGRILDKGL 65 TI A++T +++IR+SG + I + ++RY G +D L Sbjct: 8 TIAAIATPPGEGGVAVIRISGKESIPIANAIFSGSIDSMKSHTVRYGHIRCQGEHIDDVL 67 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 L+V +P S+TGED+ E H HGG + +L+ + + A PGEF+ RAF + K+DL Sbjct: 68 LLVMRAPRSYTGEDTVEIHCHGGSLITRRVLDTVLAA-GAKQALPGEFTFRAFIHNKLDL 126 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ +LI ++ E S + + G LS + +L I + +EA +DF +E ++ Sbjct: 127 SQAEAVQELIGAKNERALDASKQQLQGRLSDKILSFQSQLNSIAAILEAWVDFPDE-GLE 185 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 S +EV +D+ + ++ S G+I+ +G + ++G N GKSSL NAL K+ A Sbjct: 186 FASFEEVCSDLESVIGEMKELKSTYHDGKILHDGISLCLIGRPNVGKSSLMNALLDKERA 245 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTD PGTTRD++ L + G ++ DTAGIRE + +E+EGI+R+ +E ADL+LL+ Sbjct: 246 IVTDTPGTTRDIVEDSLRINGLNFRLIDTAGIREGAETIEQEGIRRSKEALEKADLVLLV 305 Query: 306 KEINSKKEISFPKN--IDFIFIGTKSDLYSTYTEEYDHL----------ISSFTGEGLEE 353 +++K+ ++ ID + G +++ +D IS+ +GL++ Sbjct: 306 --LDAKRGVTAEDEQLIDLVPKGKTIAVWNKIDLPHDEAPQLGIPYIVPISAKEKKGLKQ 363 Query: 354 LINKIKSILSNKFKKLPFS----IPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAEN 408 L +I ++ ++ P S + ++ RH LS + E D + +A + Sbjct: 364 LHEQIDRVV---WEHGPPSKEEILITNVRHKESLSDAIAACEKVLEGLRSDISPEFVAFD 420 Query: 409 LRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +R +LGK+ G E +L IFSKFC+GK Sbjct: 421 MRDCLENLGKVIGTDVTEDILSAIFSKFCVGK 452 >gi|88803376|ref|ZP_01118902.1| tRNA modification GTPase [Polaribacter irgensii 23-P] gi|88780942|gb|EAR12121.1| tRNA modification GTPase [Polaribacter irgensii 23-P] Length = 464 Score = 190 bits (483), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 150/476 (31%), Positives = 246/476 (51%), Gaps = 53/476 (11%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK---KKKPFPRKASLRYFFG--LDG 58 + +TI A++T + AIS+IRLSG + E K K K + + G +D Sbjct: 3 QNDTIIALATPSGVGAISVIRLSGEQAIPIVEANFKSIQKNKYLKDQKTHTIHLGHIVDN 62 Query: 59 R-ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 + +LD+ L+ +F +P+S+TGE+ E HG + I++ + R+AN GEF+ RA Sbjct: 63 KSVLDEVLVSIFKNPKSYTGENVVEISCHGSSFIQQEIIQLFLR-KGCRMANNGEFTMRA 121 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFIE 173 F N K+DL +AE++AD+I+S + +++++ M G EL L Q +D + IE Sbjct: 122 FLNAKMDLSQAEAVADVIASNSAASHQMAIQQMRGGITNELKELRAQLLD----FAALIE 177 Query: 174 ADLDFSEEE----DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSN 229 +LDFS E+ D F KE++ I F+ + I G ++NG + I+G N Sbjct: 178 LELDFSGEDVEFADRTKF--KELVVQITFV---LKRLIDSFSFGNAMKNGIPVAIIGEPN 232 Query: 230 AGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGI 289 GKS+L N L ++ AIV++I GTTRD + +L + G + DTAGIRET DI+E GI Sbjct: 233 VGKSTLLNTLLNEEKAIVSEIAGTTRDAIEDELIIAGVAFRFIDTAGIRETIDIIESIGI 292 Query: 290 KRTFLEVENADLILLLKEIN---------------------SKKEISFPKNIDFIFIGTK 328 K+ + + +NA LI+ L + N +K+ + ID + K Sbjct: 293 KKAYEKADNAQLIVFLIDANKFNHNQPQFLTEIDTIKSRFPTKRVLVIANKIDTLLASEK 352 Query: 329 SDLYSTYTEEYDHLI--SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT 386 ++L + E ++LI S+ G+E L +++ +++ +I ++ RH L+ Sbjct: 353 AELQT----EIENLILLSAKNNTGVEALKSELTDLVNIGALSNNETIVTNSRHFEALNNA 408 Query: 387 VRYLEMASLN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQ-LLDIIFSKFCIGK 440 +R + E + D+ + ++R LG ITG DV++ +L IFS FCIGK Sbjct: 409 LRAISSVQQGIELEISTDLFSIDIRECLRHLGAITGDYDVDKDILGHIFSNFCIGK 464 >gi|303235717|ref|ZP_07322324.1| tRNA modification GTPase TrmE [Prevotella disiens FB035-09AN] gi|302484164|gb|EFL47152.1| tRNA modification GTPase TrmE [Prevotella disiens FB035-09AN] Length = 460 Score = 190 bits (483), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 144/459 (31%), Positives = 245/459 (53%), Gaps = 34/459 (7%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRY--FFGLDGRILDK 63 ETI A++T AI +IR+SG ++ + I K +L Y D + +D+ Sbjct: 12 ETICALATQP-GGAIGVIRISGSKAIEIVDSIFSKSILNATANTLHYGEIIDKDQQTIDE 70 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 ++ ++ +P S+TGED+ E HG ++ +L L + + A PGE+++RA+ NGK+ Sbjct: 71 VVVSLWRAPHSYTGEDAVEISCHGSAYILEQVLHRLIE-AGCQQAKPGEYTQRAYLNGKM 129 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL + E++ADLI+S + +L++ + G SS ++L I S +E +LDFS+ E+ Sbjct: 130 DLSQTEAVADLIASTNKASYKLALSQLKGHFSSELSTLREQLLKINSLLELELDFSDHEE 189 Query: 184 VQNFSSKEVLNDILFLKNDISSHIS----QGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 ++ F+ + L + L N+I S ++ K G+ ++NG + I+G +N GKS+L N L Sbjct: 190 LE-FADRTELKE---LANEIDSKVTTLARSFKTGQALKNGIPVAIIGKTNVGKSTLLNRL 245 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 + + AIV+DI GTTRDV+ + + G DTAGIR+T D VE+ GI+RT E++ A Sbjct: 246 LRDNRAIVSDIHGTTRDVIEDSISINGVDFLFIDTAGIRKTTDYVEQLGIERTLAELQKA 305 Query: 300 DLILLL-----KEINSKKEISFPKNIDFIFIGTKSD--LYSTYTEEYDHLISSFTGEGLE 352 ++L + E ++ I+ + I + K D +T T + G Sbjct: 306 QIVLWVVDQEPTEAEKEEIITQCTDKQLILVRNKVDDLPETTPTLSENQTYHEIAISGKY 365 Query: 353 EL-INKIKSILSNKFKKLP-----FSIPSHKRHLYHLSQT----VRYLEMASLNEKDCGL 402 L I++++S++ K LP +I ++ RH L++ +R E ++N Sbjct: 366 NLGIDRLESLIY-KVADLPELTENTTIITNARHYDALTRAHASLLRVQEAMAMN---LSG 421 Query: 403 DIIAENLRLASVSLGKITGC-VDVEQLLDIIFSKFCIGK 440 D+I+E+L+ LG+ITG + ++ L IF FCIGK Sbjct: 422 DLISEDLKDTIAILGEITGNQITSQETLHNIFKHFCIGK 460 >gi|224437875|ref|ZP_03658822.1| tRNA modification GTPase TrmE [Helicobacter cinaedi CCUG 18818] gi|313144324|ref|ZP_07806517.1| tRNA modification GTPase TrmE [Helicobacter cinaedi CCUG 18818] gi|313129355|gb|EFR46972.1| tRNA modification GTPase TrmE [Helicobacter cinaedi CCUG 18818] Length = 465 Score = 190 bits (482), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 142/466 (30%), Positives = 238/466 (51%), Gaps = 46/466 (9%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66 TI A++T AISI+RLSG + + + + PR A L + + +D+ ++ Sbjct: 14 TIVAIATPVGVGAISIVRLSGEFAYNIALKLTHRDSLKPRYAHLCQIYD-ENTAIDEAIV 72 Query: 67 IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126 + FP P S+T +D E HGGI+ GI+E ++ RLAN GEF++RAF G++DL Sbjct: 73 LFFPKPHSYTTQDVCEVQCHGGISSAKGIVELCLRL-GARLANAGEFTKRAFLGGRLDLA 131 Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186 + ++A +I S++ ++ M + GELS +KL + +F E ++D+SEE + Q+ Sbjct: 132 QTHAIAGIIQSQSLEANKILMRQLKGELSGFVKTNREKLLTLLAFSEVNIDYSEEVE-QD 190 Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEI-IRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 + ++ + D L HI + + + + GY + I+G N GKSSL NAL + A Sbjct: 191 YITQ--MQDSLQELESCFKHIYEASIMRLGVIEGYTLSIVGKPNVGKSSLLNALLMYERA 248 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IV+D+ GTTRD + L +EG +V+I DTAGIR++ D +E+ GI +T ++ +D+I+ L Sbjct: 249 IVSDVEGTTRDTIEESLQIEGVIVRIVDTAGIRQSPDAIEQIGIAKTKEALDRSDVIIAL 308 Query: 306 -----------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGE----- 349 +EI K+I + + TKSDL + +Y +S F + Sbjct: 309 FDSSRAFDEKDREILDLLATHTDKHI--LLVLTKSDLPLAFDTKY---LSEFVAQNPNVL 363 Query: 350 ------------GLEELINKIKSILSNKFKKLPFSIPSH---KRHLYHLSQTVRYLEMAS 394 G + +I +KS+++ + SH K L + ++ + Sbjct: 364 QESPLYISIESGGAKAVIEALKSVINTHSGGDGLILTSHYQLKSLKDVLDSITKAYDVLN 423 Query: 395 LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L E L++ + ++R +L IT + QLLD +F FC+GK Sbjct: 424 LGE----LELFSYHIRDCITALSNITHPYEDSQLLDKLFGTFCLGK 465 >gi|307110642|gb|EFN58878.1| hypothetical protein CHLNCDRAFT_19706 [Chlorella variabilis] Length = 477 Score = 190 bits (482), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 142/499 (28%), Positives = 244/499 (48%), Gaps = 87/499 (17%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCE-----FICKKKK----------------PFP 45 TI A+ TGA A+SIIR+SG + + + +++ P P Sbjct: 1 TIAAIVTGAAQGAVSIIRVSGADAVAIAQQVFAPYSAQRRHAAAAGPAARQAPAAGHPDP 60 Query: 46 -------RKASLRYFFGL----DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNG 94 + S R ++G G +LD+ LL+ +P S+T ED E H HGG Sbjct: 61 ATHAAAWQPESHRVYYGTAIDAGGTVLDEVLLLTMLAPRSYTAEDVVEVHTHGGGVSAAR 120 Query: 95 ILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSG-- 152 +L+ + RLA PGEF+ RAF NG++DL +AES+A LI + T ++ G+SG Sbjct: 121 VLQRCLEA-GARLAQPGEFTLRAFLNGRLDLSQAESVAQLIDARTVAAADSALAGLSGGL 179 Query: 153 --ELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQG 210 E+ + + +D L + +A LDF +ED+ +++ I L + + + Sbjct: 180 GREVQRMRRECVDLLVEM----DARLDF--DEDLPPLDVPGLIDRIRRLSQQLEATLQTA 233 Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270 + G+++R G ++ ++G N GKSSL NAL+ + AIVT I GTTRD++ + + G + Sbjct: 234 RHGQLLRTGLQVALVGRPNVGKSSLLNALSGTERAIVTHIAGTTRDIVEAGVVIGGIPIT 293 Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL-----------KEINSK-------- 311 + DTAG+RE+ D+VE+ G++R+ AD++L++ EI ++ Sbjct: 294 LLDTAGLRESVDLVEQIGVERSMAAARQADIVLMVLDAQAGWTPGDAEIAAQITPAAAGA 353 Query: 312 ------KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL-SN 364 +++ P + F S S+ T EGL++L + S+ + Sbjct: 354 DASSAARQLGVPPAVGSRFAAVVS-------------TSAATREGLQDLQQAVLSLAGAP 400 Query: 365 KFKKLPFSIPSHKRH---LYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITG 421 + S ++R L S+ ++ ++ + +E +D +LR A ++LG+++G Sbjct: 401 QLAPGGISWAVNERQGEALIRASEALQRVQGSIADE--LPVDFWTIDLRAAVLALGEVSG 458 Query: 422 CVDVEQLLDIIFSKFCIGK 440 E++LD IFS+FCIGK Sbjct: 459 EDVTEEVLDSIFSRFCIGK 477 >gi|167750134|ref|ZP_02422261.1| hypothetical protein EUBSIR_01103 [Eubacterium siraeum DSM 15702] gi|167656877|gb|EDS01007.1| hypothetical protein EUBSIR_01103 [Eubacterium siraeum DSM 15702] Length = 457 Score = 190 bits (482), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 146/457 (31%), Positives = 227/457 (49%), Gaps = 24/457 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYF---FG---LDGR 59 + I A+ST +S+IR+SG +V + K P + + +G DG Sbjct: 3 DCIAAISTPMASGGVSMIRISGADALKVAAKVFIPKYPVRDIEKMDGYTAAYGDITADGT 62 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 LD G+L++F +P S+TGE++AE HGGI V +L+ + + +A GEF+++A Sbjct: 63 KLDDGVLLIFRAPHSYTGENTAEITCHGGIHVTKRVLQAVLSAGAV-MAQAGEFTKQALV 121 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NGK+ L EAE + DLI++ + + G L +++ I S I +D+ Sbjct: 122 NGKLSLTEAEGVIDLINAGNDQLLSCARAQTDGALYRRIEALCEEIIAITSEIAVWIDYP 181 Query: 180 EE-EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 +E ED + + L L +K +I S I+ GEI+RNG I+G NAGKS+L N Sbjct: 182 DESEDEDEIAKADWLRSTLAVKENIDSLIATYDCGEILRNGIATAIVGKPNAGKSTLMNR 241 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L +IVTDI GTTRD++ + L ++K++D AGIRET+D VE G++R + Sbjct: 242 LTGVQKSIVTDIEGTTRDIVEDTVQLGDIMLKLADCAGIRETEDTVENIGVQRMIERIGT 301 Query: 299 ADLILLL----KEI--NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH-------LISS 345 A LIL + +E+ + K+ I I I KSDL + + +IS+ Sbjct: 302 AQLILAVFDGSRELSDDDKRLIELLHGKTVIPIINKSDLEARADTAFIENELGKAVIISA 361 Query: 346 FTGEGLEELINKIKSI--LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLD 403 TG G +EL IK +SN F +R +Q +L+ D Sbjct: 362 KTGGGADELEQAIKQRCGISNLDAGAGFLANERQRQCALSAQAAVDRAYNALH-GGMTAD 420 Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + L A SL +++G E+++D IFS+FC+GK Sbjct: 421 VAGLELEAALSSLYELSGKTASEEVIDRIFSRFCVGK 457 >gi|57237784|ref|YP_179032.1| tRNA modification GTPase TrmE [Campylobacter jejuni RM1221] gi|81353660|sp|Q5HUK3|MNME_CAMJR RecName: Full=tRNA modification GTPase mnmE gi|57166588|gb|AAW35367.1| tRNA modification GTPase TrmE [Campylobacter jejuni RM1221] Length = 442 Score = 190 bits (482), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 151/477 (31%), Positives = 234/477 (49%), Gaps = 79/477 (16%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A++T +ISI+RLSG + + K K PR A+ F + I+D+ + Sbjct: 3 DTIAAIATAHGVGSISIVRLSGERALEFALKLSHKTKLTPRHATFTKLFNQNNEIIDEAI 62 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 +I F +P SFTGED EF +HGG +V +LEEL + RLA GEFS+RA NGK+ Sbjct: 63 MIYFKAPYSFTGEDIVEFQIHGGFSVSEVLLEELVSL-GARLALAGEFSKRACLNGKMTP 121 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE---- 181 L+A ++ DLI S++ + ++ M G L L + L +F+E +D++++ Sbjct: 122 LKALNIQDLILSKSALAAKIIARNMQGNLGELLEKIRTDLVKTLAFVETSIDYADDDLPS 181 Query: 182 ---EDVQNF--SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 E + + ++L +I L SQ K G I G+KI I+G N GKSSL Sbjct: 182 DLLEQISTMCEENSKILKEIYTL--------SQSKKGLI--EGFKIAIVGKPNVGKSSLL 231 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 NAL + AIV+DI GTTRD + L +L++I DTAGIRE+ D++E+ G+ + + Sbjct: 232 NALLSYERAIVSDIAGTTRDTIEESFKLGTHLLRIIDTAGIRESKDVIEQIGVALSKKSL 291 Query: 297 ENADLILLL--------KE--------INSKKEISF-------------PKNIDFIFIGT 327 E+AD+IL + KE N+ K+I + +N +FI + Sbjct: 292 EDADIILAVFDASRVQDKEDEKIFDLLANTDKKIFWILNKSDLENVFKNTQNKNFIKLSA 351 Query: 328 KSDLYSTYTEEYDHLISSFTGEGLE----ELINKIKSILSNKFKKLPFSIPSHKRHLYHL 383 + D+ + EE + ++SF EG+ +LIN K + Sbjct: 352 QKDI-TLLKEELQNYLNSFDSEGIMVSSLDLINACK-----------------------I 387 Query: 384 SQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 S + L E L++ A L LA L + T +++LD +F FC+GK Sbjct: 388 SSEAIFRAKGLLEE--SSLELFAFELNLAINELARFTKDFQRDEILDEMFGNFCLGK 442 >gi|315058397|gb|ADT72726.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Campylobacter jejuni subsp. jejuni S3] Length = 442 Score = 190 bits (482), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 151/477 (31%), Positives = 234/477 (49%), Gaps = 79/477 (16%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A++T +ISI+RLSG + + K K PR A+ F + I+D+ + Sbjct: 3 DTIAAIATAHGVGSISIVRLSGERALEFALKLSHKTKLTPRHATFTKLFNQNNEIIDEAI 62 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 +I F +P SFTGED EF +HGG +V +LEEL + RLA GEFS+RA NGK+ Sbjct: 63 MIYFKAPYSFTGEDIVEFQIHGGFSVSEVLLEELVSL-GARLALAGEFSKRACLNGKMTP 121 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE---- 181 L+A ++ DLI S++ + ++ M G L L + L +F+E +D++++ Sbjct: 122 LKALNIQDLILSKSALAAKIIARNMQGNLGELLEKIRTDLVKTLAFVETSIDYADDDLPP 181 Query: 182 ---EDVQNF--SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 E + + ++L +I L SQ K G I G+KI I+G N GKSSL Sbjct: 182 DLLEQISTMCEENSKILKEIYTL--------SQSKKGLI--EGFKIAIVGKPNVGKSSLL 231 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 NAL + AIV+DI GTTRD + L +L++I DTAGIRE+ D++E+ G+ + + Sbjct: 232 NALLSYERAIVSDIAGTTRDTIEESFKLGTHLLRIIDTAGIRESKDVIEQIGVALSKKSL 291 Query: 297 ENADLILLL--------KE--------INSKKEISF-------------PKNIDFIFIGT 327 E+AD+IL + KE N+ K+I + +N +FI + Sbjct: 292 EDADIILAVFDASRVQDKEDEKIFDLLANTDKKIFWILNKSDLENVFKNTQNKNFIKLSA 351 Query: 328 KSDLYSTYTEEYDHLISSFTGEGLE----ELINKIKSILSNKFKKLPFSIPSHKRHLYHL 383 + D+ + EE + ++SF EG+ +LIN K + Sbjct: 352 QKDI-TLLKEELQNYLNSFDSEGIMVSSLDLINACK-----------------------I 387 Query: 384 SQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 S + L E L++ A L LA L + T +++LD +F FC+GK Sbjct: 388 SSEAIFRAKGLLEE--SSLELFAFELNLAINELARFTKDFQRDEILDEMFGNFCLGK 442 >gi|78357435|ref|YP_388884.1| tRNA modification GTPase TrmE [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|123552067|sp|Q30YQ7|MNME_DESDG RecName: Full=tRNA modification GTPase mnmE gi|78219840|gb|ABB39189.1| tRNA modification GTPase trmE [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 468 Score = 189 bits (481), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 142/470 (30%), Positives = 229/470 (48%), Gaps = 36/470 (7%) Query: 2 NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP-FP--RKASLRYFFGLDG 58 +H +TI AV+T + IIRLSGP + + P F R L + DG Sbjct: 4 HHGTDTIAAVATPLGQGGVGIIRLSGPRSHAILTALFDSTSPGFSGFRPRVLHHGHIHDG 63 Query: 59 ----RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114 RILD L + P+P +FTGED E + HGG A++ +L+ + + R A GEF+ Sbjct: 64 TPQRRILDDVLAVHMPAPRTFTGEDVVEINCHGGPAILAAVLDAVLRQ-GARPAAHGEFT 122 Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174 RRAF NG++DL +AE++A++I++ RL+ + G L ++L +R + Sbjct: 123 RRAFLNGRMDLTQAEAVAEMIAAPAAEGVRLAQARLDGMLGRHINALRERLELVRVQLCV 182 Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234 +DF E+E V+ + + ++ + + I I + R G ++V+ G NAGKSS Sbjct: 183 AVDFPEDE-VECLAPADFMHAVEETADAIRKLIGNYERARCWREGAQVVLAGQVNAGKSS 241 Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294 L NAL + AIVTD+PGTTRD L + L+G V++ DTAG+RET DIVE+EG++ + Sbjct: 242 LLNALLGRKRAIVTDVPGTTRDFLEESITLDGLAVRLVDTAGLRETGDIVEQEGVRMSRD 301 Query: 295 EVENADLILLLKE------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFT- 347 ADL+LL+ + + ++ ++ + + + K+D + +E D + S Sbjct: 302 LAAQADLVLLVVDSRLGTGPHEQELMAAMEAGSVLVVLNKTD--AATEDELDRCVRSLAG 359 Query: 348 ----------GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE 397 G+G++ L ++ ++ + L + +L QT E Sbjct: 360 RPHVAVSAREGKGMDSLAAAVREMVLRRSNALTADAAASD-MAPNLRQTEALRRALEELE 418 Query: 398 -------KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D+ L A L +ITG + +L+ IF FCIGK Sbjct: 419 ALAADIVSGVPYDLAGVRLESACSVLSEITGETTPDDILNRIFDSFCIGK 468 >gi|291556568|emb|CBL33685.1| tRNA modification GTPase TrmE [Eubacterium siraeum V10Sc8a] Length = 457 Score = 189 bits (481), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 145/457 (31%), Positives = 227/457 (49%), Gaps = 24/457 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYF---FG---LDGR 59 + I A+ST +S+IR+SG +V + K P + + +G DG Sbjct: 3 DCIAAISTPMASGGVSMIRISGADALEVAAKVFIPKYPVRDIEKMDGYTAAYGDITADGT 62 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 LD G+L++F +P S+TGE++AE HGGI V +L+ + + +A GEF+++A Sbjct: 63 KLDDGVLLIFRAPHSYTGENTAEITCHGGIHVTKRVLQAVLSAGAV-MAQAGEFTKQALV 121 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NGK+ L EAE + DLI++ + + G L +++ I S I +D+ Sbjct: 122 NGKLSLTEAEGVIDLINAGNDQLLSCARAQTDGALYRRIEALCEEIIAITSEIAVWIDYP 181 Query: 180 EE-EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 +E ED + + L + +K +I S I+ GEI+RNG I+G NAGKS+L N Sbjct: 182 DESEDEDEIAKADWLKSVTAVKENIDSLIATYDCGEILRNGIATAIVGKPNAGKSTLMNR 241 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L +IVTDI GTTRD++ + L ++K++D AGIRET+D VE G++R + Sbjct: 242 LTGVQKSIVTDIEGTTRDIVEDTVQLGDIMLKLADCAGIRETEDTVENIGVQRMIERIGT 301 Query: 299 ADLILLL----KEI--NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH-------LISS 345 A LIL + +E+ + K+ I I I KSDL + + +IS+ Sbjct: 302 AQLILAVFDGSRELSDDDKRLIELLHGKTVIPIINKSDLEARADTAFIENELGKAVIISA 361 Query: 346 FTGEGLEELINKIKSI--LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLD 403 TG G +EL IK +SN F +R +Q +L+ D Sbjct: 362 KTGGGADELEQAIKQRCGISNLDAGAGFLANERQRQCALSAQAAVDRAYNALH-GGMTAD 420 Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + L A SL +++G E+++D IFS+FC+GK Sbjct: 421 VAGLELEAALSSLYELSGKTASEEVIDRIFSRFCVGK 457 >gi|283954515|ref|ZP_06372034.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni 414] gi|283793919|gb|EFC32669.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni 414] Length = 442 Score = 189 bits (481), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 149/454 (32%), Positives = 232/454 (51%), Gaps = 33/454 (7%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A+ST +ISI+RLSG + + +K K PR A+ F + I+D+ + Sbjct: 3 DTIVAISTAHGVGSISIVRLSGERALEFALKLSRKTKLTPRYATFTKLFNQNNEIIDEAI 62 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 +I F SP SFTGED EF HGG +V +LEEL + RLA GEFS+RA NGK+ Sbjct: 63 MIYFKSPFSFTGEDIVEFQTHGGFSVSEILLEELVSL-GARLALAGEFSKRACLNGKMTP 121 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE---- 181 L+A ++ DLI S++ + ++ M G L L + L +F+E +D++++ Sbjct: 122 LKALNIQDLILSKSVLAAKIIARNMQGNLGELLEKIRIDLVKTLAFVETSIDYADDDLPS 181 Query: 182 ---EDVQNF--SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 E + + ++L +I L SQ K G I G+KI I+G N GKSSL Sbjct: 182 DLLEQISTMCEENSKILKEIYTL--------SQSKKGLI--EGFKIAIIGKPNVGKSSLL 231 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 NAL + AIV+DI GTTRD + L +L++I DTAGIRE+ D +E+ G+ + + Sbjct: 232 NALLSYERAIVSDIAGTTRDTIEESFKLGTHLLRIIDTAGIRESKDTIEQIGVALSKKSL 291 Query: 297 ENADLILLLKEINSKKE------ISFPKNID--FIFIGTKSDLYSTY-TEEYDHLISSFT 347 E+AD+IL + + + K++ +NID +I K+DL S + + + I Sbjct: 292 EDADIILAVFDASRKEDEEDKKIFKLLENIDKKIFWILNKTDLESIFENTQNKNFIKLSA 351 Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKR-HLYHLSQTVRYLEMASLNEKDCGLDIIA 406 + + L ++++ L N F + S + +S + L E L++ A Sbjct: 352 QKDIALLKQELQNYL-NSFDSEGIMVSSLDLINACKISSEAIFRAKGLLKEN--SLELFA 408 Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LA L + T +++LD IF FC+GK Sbjct: 409 FEFNLAINELARFTKDFQRDEILDEIFGNFCLGK 442 >gi|325270021|ref|ZP_08136629.1| thiophene and furan oxidation protein ThdF [Prevotella multiformis DSM 16608] gi|324987606|gb|EGC19581.1| thiophene and furan oxidation protein ThdF [Prevotella multiformis DSM 16608] Length = 483 Score = 189 bits (481), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 142/447 (31%), Positives = 231/447 (51%), Gaps = 33/447 (7%) Query: 19 AISIIRLSGPSCFQVCEFICKKKKPFP----RKASLRYFFGLDG--RILDKGLLIVFPSP 72 AI IIR+SG + + I + K P R +L Y LD + +D L+ VF +P Sbjct: 45 AIGIIRVSGVGAIEATDRIFRGVKGRPLAEARGNTLHYGEILDKEKKAVDDVLVSVFRAP 104 Query: 73 ESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLA 132 S+TGEDS E HG + V+N ++ L R A PGEF++RA+ NGK+DL +AE++A Sbjct: 105 HSYTGEDSTEISCHGSVYVLNQVMRLLID-AGCRQAQPGEFTQRAYLNGKMDLSQAEAVA 163 Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192 DLI++ +L++ + G SS + ++L + S +E +LDFS+ E+++ E+ Sbjct: 164 DLITASNRASHQLALSQLKGHFSSELSRLREQLLRMTSLLELELDFSDHEELEFADRAEL 223 Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252 + + I+S + G I++ G + I+G +N GKS+L N L ++ AIV++I G Sbjct: 224 SALAAKIHDRIASLTKSFETGNILKKGVPVAIIGKTNVGKSTLLNCLLHEEKAIVSNIHG 283 Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL-------L 305 TTRDV+ ++ G + DTAG+R TDD +E+ GI+R + +++ A ++L + Sbjct: 284 TTRDVIEDTTEINGVTFRFIDTAGLRHTDDQIERLGIRRAYEKMKEAAVVLWVNDRQPTI 343 Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLY-----STYTEEYDHLISSFTGE---GLEELINK 357 +E + ++ K + +F K D ST E IS+ + GLE I Sbjct: 344 EECREMRHLAEGKKLITVF--NKMDDMPVRPGSTGLEAQTVYISAKLKQNIAGLETAIYN 401 Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTV-RYLEMASLNEKDCGL--DIIAENLRLASV 414 I + + H L H ++ R ++ L GL D+++E+LR+ Sbjct: 402 AAGIPEIDENSIIVTSVRHYDALVHADASILRVIDALQL-----GLSGDLVSEDLRICLD 456 Query: 415 SLGKITGC-VDVEQLLDIIFSKFCIGK 440 L ITG + ++LD IF FCIGK Sbjct: 457 QLADITGGQITTHEVLDNIFRHFCIGK 483 >gi|121612630|ref|YP_001000638.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni 81-176] gi|167005565|ref|ZP_02271323.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni 81-176] gi|166200472|sp|A1VZU7|MNME_CAMJJ RecName: Full=tRNA modification GTPase mnmE gi|87248887|gb|EAQ71850.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni 81-176] Length = 442 Score = 189 bits (481), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 151/477 (31%), Positives = 234/477 (49%), Gaps = 79/477 (16%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A++T +ISI+RLSG + + K K PR A+ F + I+D+ + Sbjct: 3 DTIAAIATAHGVGSISIVRLSGERALEFALKLSHKTKLTPRHATFTKLFNQNNEIIDEAI 62 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 +I F +P SFTGED EF HGG +V +LEEL + RLA GEFS+RA NGK+ Sbjct: 63 MIYFKAPYSFTGEDIVEFQTHGGFSVSEVLLEELVSL-GARLALAGEFSKRACLNGKMTP 121 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE---- 181 L+A ++ DLI S++ + ++ M G L L + L +F+E +D++++ Sbjct: 122 LKALNIQDLILSKSALAAKIIARNMQGNLGELLEKIRTDLVKTLAFVETSIDYADDDLPS 181 Query: 182 ---EDVQNF--SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 E + + ++L +I L SQ K G I G+KI I+G N GKSSL Sbjct: 182 DLLEQISTMCEENSKILKEIYTL--------SQSKKGLI--EGFKIAIVGKPNVGKSSLL 231 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 NAL + AIV+DI GTTRD + + L +L++I DTAGIRE+ D++E+ G+ + + Sbjct: 232 NALLSYERAIVSDIAGTTRDTIEENFKLGTHLLRIIDTAGIRESKDVIEQIGVALSKKSL 291 Query: 297 ENADLILLL--------KE--------INSKKEISF-------------PKNIDFIFIGT 327 E+AD+IL + KE N+ K+I + +N +FI + Sbjct: 292 EDADIILAVFDASRVQDKEDEKIFDLLANTDKKIFWILNKSDLENVFKNTQNKNFIKLSA 351 Query: 328 KSDLYSTYTEEYDHLISSFTGEGLE----ELINKIKSILSNKFKKLPFSIPSHKRHLYHL 383 + D+ + EE + ++SF EG+ +LIN K + Sbjct: 352 QKDI-TLLKEELQNYLNSFDSEGIMVSSLDLINACK-----------------------I 387 Query: 384 SQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 S + L E L++ A L LA L + T +++LD +F FC+GK Sbjct: 388 SSEAIFRAKGLLEE--SSLELFAFELNLAINELARFTKDFQRDEILDEMFGNFCLGK 442 >gi|148926123|ref|ZP_01809809.1| putative thiophene and furan oxidation protein [Campylobacter jejuni subsp. jejuni CG8486] gi|145845602|gb|EDK22694.1| putative thiophene and furan oxidation protein [Campylobacter jejuni subsp. jejuni CG8486] Length = 442 Score = 189 bits (480), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 146/456 (32%), Positives = 227/456 (49%), Gaps = 37/456 (8%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A++T +ISI+RLSG + + K K PR A+ F + I+D+ + Sbjct: 3 DTIAAIATAHGVGSISIVRLSGERALEFALKLSHKTKLTPRHATFTKLFNQNNEIIDEAI 62 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 +I F +P SFTGED EF HGG +V +LEEL + RLA GEFS+RA NGK+ Sbjct: 63 MIYFKAPYSFTGEDIVEFQTHGGFSVSEVLLEELVSL-GARLALAGEFSKRACLNGKMTP 121 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE---- 181 L+A ++ DLI S++ + ++ M G L L + L +F+E +D++++ Sbjct: 122 LKALNIQDLILSKSALAAKIIARNMQGNLGKLLEKIRTDLVKTLAFVETSIDYADDDLPS 181 Query: 182 ---EDVQNF--SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 E + + ++L +I L SQ K G I G+KI I+G N GKSSL Sbjct: 182 DLLEQISTMCEENSKILKEIYTL--------SQSKKGLI--EGFKIAIVGKPNVGKSSLL 231 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 NAL + AIV+DI GTTRD + L +L++I DTAGIRE+ D++E+ G+ + + Sbjct: 232 NALLSYERAIVSDIAGTTRDTIEESFKLGTHLLRIIDTAGIRESKDVIEQIGVALSKKSL 291 Query: 297 ENADLILLLKEINSKKEISFPKNIDFI--------FIGTKSDLYSTYTEEYDHLISSFTG 348 E+AD+IL + + + ++ K D + +I KSDL + + + +F Sbjct: 292 EDADIILAVFDASRVQDKEDEKIFDLLANTDKKIFWILNKSDLENVFKNTQNK---NFIK 348 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK----DCGLDI 404 ++ I +K L N F F L + A K + L++ Sbjct: 349 LSAQKDITLLKEELQNYFN--SFDSEGIMVSSLDLINACKISSEAIFRAKGLLEESSLEL 406 Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A L LA L + T +++LD +F FC+GK Sbjct: 407 FAFELNLAINELARFTKDFQRDEILDEMFGNFCLGK 442 >gi|325854323|ref|ZP_08171522.1| tRNA modification GTPase TrmE [Prevotella denticola CRIS 18C-A] gi|325484117|gb|EGC87051.1| tRNA modification GTPase TrmE [Prevotella denticola CRIS 18C-A] Length = 510 Score = 189 bits (480), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 129/442 (29%), Positives = 228/442 (51%), Gaps = 23/442 (5%) Query: 19 AISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFG----LDGRILDKGLLIVFPSP 72 AI I+R+SG +V + F KK+K +G DG +D L+ VF +P Sbjct: 72 AIGIVRVSGEGALEVTDRIFRSKKRKHLTEAGGYTLHYGEILDKDGETIDDVLVSVFRAP 131 Query: 73 ESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLA 132 S+TGEDS E HG ++N +++ L K R A PGE+++RA+ NGK+DL +AE++A Sbjct: 132 HSYTGEDSTEIACHGSAYILNKVVQVLIKA-GCRQAQPGEYTQRAYLNGKMDLSQAEAVA 190 Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192 DLI++ ++++ + G SS Q +L + S +E +LDFS+ E+++ E+ Sbjct: 191 DLIAASNRASHQIALSQLKGHFSSELSQLRKQLLKMTSLLELELDFSDHEELEFADRSEL 250 Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252 + N I + + G ++ G + I+G +N GKS+L N L ++ AIV++I G Sbjct: 251 KVLAEKIHNRIITLTESFETGNALKRGIPVAIIGKTNVGKSTLLNCLLHEEKAIVSNIHG 310 Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL------- 305 TTRD + +++G + DTAG+R TDD +E+ GI+R + +++ A ++L + Sbjct: 311 TTRDTIEDTTEIQGVTFRFIDTAGLRHTDDQIEQLGIRRAYAKLDEASIVLWVVDRQPTT 370 Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGE------GLEELINKIK 359 +E + ++ K + +F + + E + + + + LE I + Sbjct: 371 EERMEMRHLTEEKKLITVFNKMDTMPAAARCPEVNPQVIYISAKLKQNITALETAIYEAA 430 Query: 360 SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKI 419 + + + + H L H +++ + + +LN+ G D+I+E+LR+ L I Sbjct: 431 GLQTINENSVIITSARHYDALSHADESILRV-INALNDGLSG-DLISEDLRICLDQLADI 488 Query: 420 TGC-VDVEQLLDIIFSKFCIGK 440 TG + ++L IF FCIGK Sbjct: 489 TGGQITTHEVLGNIFKNFCIGK 510 >gi|294781805|ref|ZP_06747138.1| tRNA modification GTPase TrmE [Fusobacterium sp. 1_1_41FAA] gi|294481915|gb|EFG29683.1| tRNA modification GTPase TrmE [Fusobacterium sp. 1_1_41FAA] Length = 455 Score = 189 bits (480), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 147/459 (32%), Positives = 242/459 (52%), Gaps = 31/459 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKA-SLRYFFGLDG-RIL 61 +TI A+ST ISI+R+SG + E F K KK K S+ Y +D I+ Sbjct: 4 DTIAAISTPRGEGGISIVRMSGQDSLNILEKIFRAKNKKVSELKNYSINYGHIIDNEHIV 63 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121 D+ L+ + +P ++T ED E + HGG V +L+ + K R+A GEF++RAF NG Sbjct: 64 DEVLVSIMKAPNTYTREDIVEINCHGGFLVTEQVLQVVLK-NGARIAEIGEFTKRAFLNG 122 Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181 +IDL +AE++ D+I +TE LS+ + G+L + + + I LD+ EE Sbjct: 123 RIDLTQAEAVIDVIHGKTEKSLSLSLNQLRGDLRDKIATIKKSVLDLAAHINVVLDYPEE 182 Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 + + + +++++ +I IS G+II++G K I+G N GKSS+ N+L + Sbjct: 183 -GIDDPVPENLVDNLKKASAEIKDLISSYDKGKIIKDGIKTAIIGKPNVGKSSILNSLLR 241 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 +D AIVT IPGTTRD++ +++ + + DTAGIR TDDIVE G++++ + +ADL Sbjct: 242 EDRAIVTHIPGTTRDIIEEVININSIPLLLVDTAGIRNTDDIVENIGVEKSKELINSADL 301 Query: 302 ILLLKE---------------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF 346 IL + + IN+ K I ID I + DL + IS+ Sbjct: 302 ILYVIDTSREIDEEDFRIYEIINTDKVIGILNKID---IKKEIDLSKFSKIDKWIEISAL 358 Query: 347 TGEGLEELINKIKSILSNK-----FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401 + G++ L ++I + N+ +KL + HK L ++ + L + + Sbjct: 359 SKIGIDNLEDQIYKYIMNENVEDSSQKLVITNVRHKSALEKTNEAL--LNIIETIDMGLP 416 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++A +++ A SL ++TG + E LL+ IFS FC+GK Sbjct: 417 MDLMAVDIKDALDSLSEVTGEISSEDLLNHIFSNFCVGK 455 >gi|307566127|ref|ZP_07628585.1| tRNA modification GTPase TrmE [Prevotella amnii CRIS 21A-A] gi|307345315|gb|EFN90694.1| tRNA modification GTPase TrmE [Prevotella amnii CRIS 21A-A] Length = 447 Score = 189 bits (480), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 143/456 (31%), Positives = 242/456 (53%), Gaps = 34/456 (7%) Query: 7 TIFAVSTGALPS-AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRY--FFGLDGRILDK 63 TI A++T LP AI +IR+SG + I K +L Y + G+++D+ Sbjct: 4 TICALAT--LPGGAIGVIRVSGKDAIVIVNRIFSKDILSMPANTLCYGNIIDMAGKVIDE 61 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 ++ ++ +P S+TGE++ E HG ++ +L L + + A PGEF++RA+ NGK+ Sbjct: 62 VVVSIWHAPHSYTGENAVEISCHGSAYILKEVLHLLIEAGCYQ-ALPGEFTQRAYLNGKM 120 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL +AE++ADL++S + RL++ M G S+ +L I S +E +LDFSE ED Sbjct: 121 DLSQAEAVADLVASSNKASYRLALSQMKGHFSNELSSLRKRLLKITSLLELELDFSEHED 180 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 ++ E+++ + + S + K+G+ ++ G + I+G +N GKS+L NAL ++ Sbjct: 181 LEFADRTELISLTDEIDKKVLSLLHSFKIGQALKEGVAVAIIGKTNVGKSTLLNALLGEE 240 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303 AIV++I GTTRDV+ ++ G + DTAGIR+T D VEK GI+RT+ ++ A +++ Sbjct: 241 RAIVSNIEGTTRDVIEDVTEINGISFRFIDTAGIRQTTDEVEKLGIERTYKMLDKAQMVI 300 Query: 304 LLKEIN-SKKEI-SFPKNID---FIFIGTKSDLYSTYTEEYDHL---ISSFTGEGLEELI 355 + + N S+KE K + FI + K D + +S+ G +EEL Sbjct: 301 WVIDDNPSRKEYEDIKKKVGERPFIIVRNKVDTIVNKEALPSFITLSVSAKEGTNIEELK 360 Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL----------DII 405 I +KK +IP+ + ++ Y + +E C + D++ Sbjct: 361 QAI-------YKKA--NIPAFNENSVIVTNARHYDVLTKAHEALCRVHNAFKANLPGDLV 411 Query: 406 AENLRLASVSLGKITGC-VDVEQLLDIIFSKFCIGK 440 AE+L+ LG+ITG + ++ L+ IF FCIGK Sbjct: 412 AEDLKDVLSLLGEITGTQISSQETLNNIFKHFCIGK 447 >gi|255994565|ref|ZP_05427700.1| tRNA modification GTPase TrmE [Eubacterium saphenum ATCC 49989] gi|255993278|gb|EEU03367.1| tRNA modification GTPase TrmE [Eubacterium saphenum ATCC 49989] Length = 453 Score = 189 bits (480), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 138/457 (30%), Positives = 241/457 (52%), Gaps = 30/457 (6%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFI----CKKKKPFPRKASLRYFFGL---DGR 59 TI A+ST AI +I++SG ++ E + K++ + + R ++G D R Sbjct: 4 TIAAISTAGY-GAIGVIKISGNRSKKILEELFKNAGKQRIESDKWQNKRLYYGTIEQDNR 62 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 +LD+ + + +P ++T ED E + HG IL+ + LA PGEF++ AF Sbjct: 63 VLDEVMAVYMKAPHTYTREDVVEIYTHGNAVCQRRILDAVID-EGAELAEPGEFTKLAFL 121 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NG+IDL +AE++ ++I++++E L+++G++G+ G +L I + ++D+ Sbjct: 122 NGRIDLTQAEAIIEMINAKSEEAFDLALQGLAGQNERSIGNARVRLQEILVEMAVNIDYP 181 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 +E D++ + ++ + I + N++ I + + R+G ++ ILG NAGKSSL N L Sbjct: 182 DE-DIEEINYQKTIESIEDVINELDEVIDITRKRRVYRDGIRVAILGKPNAGKSSLLNEL 240 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 +D AI++DI GTTRDV+ + L G + + DTAGIRE+D+++EKEGI R++ A Sbjct: 241 LMEDRAIISDIEGTTRDVIEEQILLSGIPITLIDTAGIRESDNVIEKEGIDRSYKAANEA 300 Query: 300 DLILLLKEINSKKE--------ISFPKNIDFIFIGTKSDL-YSTYTEEYDHL------IS 344 D+++ L I+S K I + + +KSDL S +E L IS Sbjct: 301 DVVVYL--IDSTKGPDGEDENVIKRLRADSLVVCFSKSDLPMSAKNKENKGLFDKSIDIS 358 Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGLD 403 G+EEL ++++ I K + + R +Y + + L E +K LD Sbjct: 359 IRNKSGMEELKSELRKIAEE--KNVAKTEGKRDRTVYEAIKAKKSLNEAKKALKKGLSLD 416 Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++ A LG ITG E++++ +F +FC+GK Sbjct: 417 FAEVDVKNAYAYLGNITGDTASEEVINKVFERFCLGK 453 >gi|205356679|ref|ZP_03223440.1| putative thiophene and furan oxidation protein [Campylobacter jejuni subsp. jejuni CG8421] gi|205345417|gb|EDZ32059.1| putative thiophene and furan oxidation protein [Campylobacter jejuni subsp. jejuni CG8421] Length = 442 Score = 189 bits (480), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 146/456 (32%), Positives = 227/456 (49%), Gaps = 37/456 (8%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A++T +ISI+RLSG + + K K PR A+ F + I+D+ + Sbjct: 3 DTIAAIATAHGVGSISIVRLSGERALEFALKLSHKTKLTPRHATFTKLFNQNNEIIDEAI 62 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 +I F +P SFTGED EF HGG +V +LEEL + RLA GEFS+RA NGK+ Sbjct: 63 MIYFKAPYSFTGEDIVEFQTHGGFSVSEVLLEELVSL-GARLALAGEFSKRACLNGKMTP 121 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE---- 181 L+A ++ DLI S++ + ++ M G L L + L +F+E +D++++ Sbjct: 122 LKALNIQDLILSKSALAAKIIARNMQGNLGELLEKIRTDLVKTLAFVETSIDYADDDLPS 181 Query: 182 ---EDVQNF--SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 E + + ++L +I L SQ K G I G+KI I+G N GKSSL Sbjct: 182 DLLEQISTMCEENSKILKEIYTL--------SQSKKGLI--EGFKIAIVGKPNVGKSSLL 231 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 NAL + AIV+DI GTTRD + L +L++I DTAGIRE+ D++E+ G+ + + Sbjct: 232 NALLSYERAIVSDIAGTTRDTIEESFKLGTHLLRIIDTAGIRESKDVIEQIGVALSKKSL 291 Query: 297 ENADLILLLKEINSKKEISFPKNIDFI--------FIGTKSDLYSTYTEEYDHLISSFTG 348 E+AD+IL + + + ++ K D + +I KSDL + + + +F Sbjct: 292 EDADIILAVFDASRVQDKEDEKIFDLLANTDKKIFWILNKSDLENVFKNTQNK---NFIK 348 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK----DCGLDI 404 ++ I +K L N F F L + A K + L++ Sbjct: 349 LSAQKDITLLKEELQNYFN--SFDSEGIMVSSLDLINACKISSEAIFRAKGLLEESSLEL 406 Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A L LA L + T +++LD +F FC+GK Sbjct: 407 FAFELNLAINELARFTKDFQRDEILDEMFGNFCLGK 442 >gi|256851670|ref|ZP_05557058.1| tRNA modification GTPase TrmE [Lactobacillus jensenii 27-2-CHN] gi|260661613|ref|ZP_05862525.1| tRNA modification GTPase TrmE [Lactobacillus jensenii 115-3-CHN] gi|256615628|gb|EEU20817.1| tRNA modification GTPase TrmE [Lactobacillus jensenii 27-2-CHN] gi|260547670|gb|EEX23648.1| tRNA modification GTPase TrmE [Lactobacillus jensenii 115-3-CHN] Length = 460 Score = 189 bits (480), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 152/467 (32%), Positives = 242/467 (51%), Gaps = 42/467 (8%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD---G 58 E +TI A+ST ISI+RLSG ++ + K K + AS +G +D Sbjct: 6 EFDTIAAISTPIGEGGISIVRLSGEDAVKIANKLFKGK-DLSKVASHTINYGHIIDPETS 64 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 +++D+ ++ V +P++FT ED E + HGGI V N IL+ L K R+A GEF++RAF Sbjct: 65 KVVDEVMVSVLLAPKTFTKEDMVEINCHGGIVVTNKILQLLLKH-GARMAEAGEFTKRAF 123 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR-------SF 171 NG+IDL +AES+ D++ ++T+ R+++M + G L +DK+ ++R + Sbjct: 124 VNGRIDLTQAESVMDIVRAKTDKARQVAMNQLEGGL-------LDKIRNMRQEILDTLAN 176 Query: 172 IEADLDFSE--EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSN 229 +E ++D+ E + V +E ++ N + +QGK I+RNG I+G N Sbjct: 177 VEVNIDYPEYDADQVTATQMQETSKKVIEAINRLLKTANQGK---IMRNGLATAIVGRPN 233 Query: 230 AGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGI 289 GKSSL N L + D AIVTD+ GTTRD L + + G +K+ DTAGI T+D VEK G+ Sbjct: 234 VGKSSLLNYLTQDDKAIVTDVAGTTRDTLEEYVSIRGVPLKLIDTAGIHHTEDKVEKIGV 293 Query: 290 KRTFLEVENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI 343 +R+ +E ADL+LLL + +K I + KN I + K+DL +E + Sbjct: 294 ERSKKAIEQADLVLLLLNASEALTTEDEKLIDYTKNKKRIVVLNKADLGIKLNKEDLKVQ 353 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFS---------IPSHKRHLYHLSQTVRYLEMAS 394 + + L + + L KL FS + +++R L + L Sbjct: 354 TQASIVVTSILKEENLNELEEAISKLFFSGIHNSNDEVLVTNQRQAGLLEKAKDQLTDVV 413 Query: 395 LNEKDCG-LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + LDI + A +LG+ITG ++L+ +FS+FC+GK Sbjct: 414 DAVDNDVPLDIAQIDFTGAWDTLGEITGDSAPDELITQLFSQFCLGK 460 >gi|297205279|ref|ZP_06922675.1| tRNA modification GTPase TrmE [Lactobacillus jensenii JV-V16] gi|297149857|gb|EFH30154.1| tRNA modification GTPase TrmE [Lactobacillus jensenii JV-V16] Length = 483 Score = 189 bits (480), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 152/467 (32%), Positives = 242/467 (51%), Gaps = 42/467 (8%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD---G 58 E +TI A+ST ISI+RLSG ++ + K K + AS +G +D Sbjct: 29 EFDTIAAISTPIGEGGISIVRLSGEDAVKIANKLFKGKD-LSKVASHTINYGHIIDPETS 87 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 +++D+ ++ V +P++FT ED E + HGGI V N IL+ L K R+A GEF++RAF Sbjct: 88 KVVDEVMVSVLLAPKTFTKEDMVEINCHGGIVVTNKILQLLLKH-GARMAEAGEFTKRAF 146 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR-------SF 171 NG+IDL +AES+ D++ ++T+ R+++M + G L +DK+ ++R + Sbjct: 147 VNGRIDLTQAESVMDIVRAKTDKARQVAMNQLEGGL-------LDKIRNMRQEILDTLAN 199 Query: 172 IEADLDFSE--EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSN 229 +E ++D+ E + V +E ++ N + +QGK I+RNG I+G N Sbjct: 200 VEVNIDYPEYDADQVTATQMQETSKKVIEAINRLLKTANQGK---IMRNGLATAIVGRPN 256 Query: 230 AGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGI 289 GKSSL N L + D AIVTD+ GTTRD L + + G +K+ DTAGI T+D VEK G+ Sbjct: 257 VGKSSLLNYLTQDDKAIVTDVAGTTRDTLEEYVSIRGVPLKLIDTAGIHHTEDKVEKIGV 316 Query: 290 KRTFLEVENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI 343 +R+ +E ADL+LLL + +K I + KN I + K+DL +E + Sbjct: 317 ERSKKAIEQADLVLLLLNASEALTTEDEKLIDYTKNKKRIVVLNKADLGIKLNKEDLKVQ 376 Query: 344 SSFTGEGLEELINKIKSILSNKFKKLPFS---------IPSHKRHLYHLSQTVRYLEMAS 394 + + L + + L KL FS + +++R L + L Sbjct: 377 TQASIVVTSILKEENLNELEEAISKLFFSGIHNSNDEVLVTNQRQAGLLEKAKDQLTDVV 436 Query: 395 LNEKDCG-LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + LDI + A +LG+ITG ++L+ +FS+FC+GK Sbjct: 437 DAVDNDVPLDIAQIDFTGAWDTLGEITGDSAPDELITQLFSQFCLGK 483 >gi|86150688|ref|ZP_01068909.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni CF93-6] gi|88596778|ref|ZP_01100015.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni 84-25] gi|218562575|ref|YP_002344354.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|14195292|sp|Q9PNX9|MNME_CAMJE RecName: Full=tRNA modification GTPase mnmE gi|85838869|gb|EAQ56137.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni CF93-6] gi|88191619|gb|EAQ95591.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni 84-25] gi|112360281|emb|CAL35076.1| putative tRNA modification GTPase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284926189|gb|ADC28541.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni IA3902] gi|315927915|gb|EFV07238.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315928514|gb|EFV07818.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni 305] Length = 442 Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 151/477 (31%), Positives = 233/477 (48%), Gaps = 79/477 (16%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A++T +ISI+RLSG + + K K PR A+ F + I+D+ + Sbjct: 3 DTIAAIATAHGVGSISIVRLSGERALEFALKLSHKTKLTPRHATFTKLFNQNNEIIDEAI 62 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 +I F +P SFTGED EF HGG +V +LEEL + RLA GEFS+RA NGK+ Sbjct: 63 MIYFKAPYSFTGEDIVEFQTHGGFSVSEVLLEELVSL-GARLALAGEFSKRACLNGKMTP 121 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE---- 181 L+A ++ DLI S++ + ++ M G L L + L +F+E +D++++ Sbjct: 122 LKALNIQDLILSKSALAAKIIARNMQGNLGELLEKIRTDLVKTLAFVETSIDYADDDLPS 181 Query: 182 ---EDVQNF--SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 E + + ++L +I L SQ K G I G+KI I+G N GKSSL Sbjct: 182 DLLEQISTMCEENSKILKEIYTL--------SQSKKGLI--EGFKIAIVGKPNVGKSSLL 231 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 NAL + AIV+DI GTTRD + + L +L++I DTAGIRE+ D++E+ G+ + + Sbjct: 232 NALLSYERAIVSDIAGTTRDTIEENFKLGTHLLRIIDTAGIRESKDVIEQIGVALSKKSL 291 Query: 297 ENADLILLL--------KE--------INSKKEISF-------------PKNIDFIFIGT 327 E+AD+IL + KE N+ K+I + +N +FI + Sbjct: 292 EDADIILAVFDASRVQDKEDEKIFDLLANTDKKIFWILNKSDLENVFKNTQNKNFIKLSA 351 Query: 328 KSDLYSTYTEEYDHLISSFTGEGLE----ELINKIKSILSNKFKKLPFSIPSHKRHLYHL 383 + D+ + EE + ++SF EG+ +LIN K + Sbjct: 352 QKDI-TLLKEELQNYLNSFDSEGIMVSSLDLINACK-----------------------I 387 Query: 384 SQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 S + L E L+ A L LA L + T +++LD +F FC+GK Sbjct: 388 SSEAIFRAKGLLEE--SSLEFFAFELNLAINELARFTKDFQRDEILDEMFGNFCLGK 442 >gi|86150742|ref|ZP_01068958.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni 260.94] gi|315124454|ref|YP_004066458.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85841912|gb|EAQ59158.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni 260.94] gi|315018176|gb|ADT66269.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 442 Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 151/477 (31%), Positives = 233/477 (48%), Gaps = 79/477 (16%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A++T +ISI+RLSG + + K K PR A+ F + I+D+ + Sbjct: 3 DTIAAIATAHGVGSISIVRLSGERALEFALKLSHKTKLTPRHATFTKLFNQNNEIIDEAI 62 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 +I F +P SFTGED EF HGG +V +LEEL + RLA GEFS+RA NGK+ Sbjct: 63 MIYFKAPYSFTGEDIVEFQTHGGFSVSEVLLEELVSL-GARLALAGEFSKRACLNGKMTP 121 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE---- 181 L+A ++ DLI S++ + ++ M G L L + L +F+E +D++++ Sbjct: 122 LKALNIQDLILSKSALAAKIIARNMQGNLGELLEKIRTDLVKTLAFVETSIDYADDDLPS 181 Query: 182 ---EDVQNF--SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 E + + ++L +I L SQ K G I G+KI I+G N GKSSL Sbjct: 182 DLLEQISTMCEENSKILKEIYTL--------SQSKKGLI--EGFKIAIVGKPNVGKSSLL 231 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 NAL + AIV+DI GTTRD + L +L++I DTAGIRE+ D++E+ G+ + + Sbjct: 232 NALLSYERAIVSDIAGTTRDTIEESFKLGTHLLRIIDTAGIRESKDVIEQIGVALSKKSL 291 Query: 297 ENADLILLL--------KE--------INSKKEISF-------------PKNIDFIFIGT 327 E+AD+IL + KE N+ K+I + +N +FI + Sbjct: 292 EDADIILAVFDASRVQDKEDEKIFDLLANTDKKIFWILNKSDLENVFKNTQNKNFIKLSA 351 Query: 328 KSDLYSTYTEEYDHLISSFTGEGLE----ELINKIKSILSNKFKKLPFSIPSHKRHLYHL 383 + D+ + EE + ++SF EG+ +LIN K + Sbjct: 352 QKDI-TLLKEELQNYLNSFDSEGIMVSSLDLINACK-----------------------I 387 Query: 384 SQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 S + L E L++ A L LA L + T +++LD +F FC+GK Sbjct: 388 SSEAIFRAKGLLEE--SSLELFAFELNLAINELARFTKDFQRDEILDEMFGNFCLGK 442 >gi|291531889|emb|CBK97474.1| tRNA modification GTPase TrmE [Eubacterium siraeum 70/3] Length = 457 Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 146/457 (31%), Positives = 228/457 (49%), Gaps = 24/457 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYF---FG---LDGR 59 + I A+ST +S+IR+SG +V + K P + + +G DG Sbjct: 3 DCIAAISTPMASGGVSMIRISGADALEVAAKVFIPKYPVRDIEKMDGYTAAYGDITADGT 62 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 LD G+L++F +P S+TGE++AE HGGI V +L+ + + +A GEF+++A Sbjct: 63 KLDDGVLLIFRAPHSYTGENTAEITCHGGIHVTKRVLQAVLSAGAV-MAQAGEFTKQALV 121 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NGK+ L EAE + DLI++ + + G L +++ I S I +D+ Sbjct: 122 NGKLSLTEAEGVIDLINAGNDQLLSCARAQTDGALYRRIEALCEEIIAITSEIAVWIDYP 181 Query: 180 EE-EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 +E ED + + L + +K +I S I+ GEI+RNG I+G NAGKS+L N Sbjct: 182 DESEDEDEIAKADWLKSVTAVKENIDSLIATYDCGEILRNGIATAIVGKPNAGKSTLMNR 241 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L +IVTDI GTTRD++ + L ++K++D AGIRET+D VE G++R + Sbjct: 242 LTGVQKSIVTDIEGTTRDIVEDTVQLGDIMLKLADCAGIRETEDTVENIGVQRMIERIGT 301 Query: 299 ADLILLL----KEI--NSKKEISFPKNIDFIFIGTKSDLYSTYTEEY--DHL-----ISS 345 A LIL + +E+ + K+ I I I KSDL + + + L IS+ Sbjct: 302 AQLILAVFDGSRELSDDDKRLIELLHGKTVIPIINKSDLEARADTAFIENELGKAVKISA 361 Query: 346 FTGEGLEELINKIKSI--LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLD 403 TG G +EL IK +SN F +R +Q +L+ D Sbjct: 362 KTGGGADELEQAIKQRCGISNLDAGAGFLANERQRQCALSAQAAVDRAYNALH-GGMTAD 420 Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + L A SL +++G E+++D IFS+FC+GK Sbjct: 421 VAGLELEAALSSLYELSGKTASEEVIDRIFSRFCVGK 457 >gi|86152727|ref|ZP_01070932.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni HB93-13] gi|85843612|gb|EAQ60822.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni HB93-13] Length = 442 Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 151/477 (31%), Positives = 232/477 (48%), Gaps = 79/477 (16%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A++T +ISI+RLSG + + K K PR A+ F + I+D+ + Sbjct: 3 DTIAAIATAHGVGSISIVRLSGERALEFALKLSHKTKLIPRHATFTKLFNQNNEIIDEAI 62 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 +I F +P SFTGED EF HGG +V +LEEL + RLA GEFS+RA NGK+ Sbjct: 63 MIYFKTPYSFTGEDIVEFQTHGGFSVSEVLLEELVSL-GARLALAGEFSKRACLNGKMTP 121 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE---- 181 L+A ++ DLI S++ + ++ M G L L + L +F+E +D++++ Sbjct: 122 LKALNIQDLILSKSALAAKIIARNMQGNLGELLEKIRTDLVKTLAFVETSIDYADDDLPS 181 Query: 182 ---EDVQNF--SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 E + + ++L +I L SQ K G I G+KI I+G N GKSSL Sbjct: 182 DLLEQISTMCEENSKILKEIYTL--------SQSKKGLI--EGFKIAIVGKPNVGKSSLL 231 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 NAL + AIV+DI GTTRD + L +L++I DTAGIRE+ D +E+ G+ + + Sbjct: 232 NALLSYERAIVSDIAGTTRDTIEESFKLGTHLLRIIDTAGIRESKDTIEQIGVALSKKSL 291 Query: 297 ENADLILLL--------KE--------INSKKEISF-------------PKNIDFIFIGT 327 E+AD+IL + KE N+ K+I + +N +FI + Sbjct: 292 EDADIILAVFDASRVQDKEDGKIFDLLANTDKKIFWILNKSDLENVFKNTQNKNFIKLSA 351 Query: 328 KSDLYSTYTEEYDHLISSFTGEGLE----ELINKIKSILSNKFKKLPFSIPSHKRHLYHL 383 + D+ + EE + ++SF EG+ +LIN K + Sbjct: 352 QKDI-TLLKEELQNYLNSFDSEGIMVSSLDLINACK-----------------------I 387 Query: 384 SQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 S + L E L++ A L LA L + T +++LD +F FC+GK Sbjct: 388 SSEAIFRAKGLLEE--SSLELFAFELNLAINELARFTKDFQRDEILDEMFGNFCLGK 442 >gi|327313587|ref|YP_004329024.1| tRNA modification GTPase TrmE [Prevotella denticola F0289] gi|326945796|gb|AEA21681.1| tRNA modification GTPase TrmE [Prevotella denticola F0289] Length = 510 Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 130/442 (29%), Positives = 227/442 (51%), Gaps = 23/442 (5%) Query: 19 AISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFG----LDGRILDKGLLIVFPSP 72 AI I+R+SG +V + F KK K +G DG +D L+ VF +P Sbjct: 72 AIGIVRVSGEGALEVTDRIFRSKKGKHLTEAGGYTLHYGEILDKDGETIDDVLVSVFRTP 131 Query: 73 ESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLA 132 S+TGEDS E HG ++N +++ L K R A PGE+++RA+ NGK+DL +AE++A Sbjct: 132 HSYTGEDSTEIACHGSAYILNKVVQVLIKA-GCRQAQPGEYTQRAYLNGKMDLSQAEAVA 190 Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192 DLI++ ++++ + G SS Q +L + S +E +LDFS+ E+++ E+ Sbjct: 191 DLIAASNRASHQIALSQLKGHFSSELSQLRKQLLKMTSLLELELDFSDHEELEFADRSEL 250 Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252 + N I + + G ++ G + I+G +N GKS+L N L ++ AIV++I G Sbjct: 251 KVLAEKIHNRIITLTESFETGNALKRGIPVAIIGKTNVGKSTLLNCLLHEEKAIVSNIHG 310 Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL------- 305 TTRD + +++G + DTAGIR TDD +E+ GI+R + +++ A ++L + Sbjct: 311 TTRDTIEDTTEIQGVTFRFIDTAGIRHTDDQIEQLGIRRAYEKLDEASIVLWVVDRQPTT 370 Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGE------GLEELINKIK 359 +E + ++ K + +F + + E + + + + LE I + Sbjct: 371 EERMEMRHLTEEKKLITVFNKMDTMPAAARCPEVNPQVIYISAKLKQNITALETAIYEAA 430 Query: 360 SILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKI 419 + + + + H L H +++ + + +LN+ G D+I+E+LR+ L I Sbjct: 431 GLQTINENSVIITSARHYDALSHADESILRV-INALNDGLSG-DLISEDLRICLDQLADI 488 Query: 420 TGC-VDVEQLLDIIFSKFCIGK 440 TG + ++L IF FCIGK Sbjct: 489 TGGQITTHEVLGNIFKNFCIGK 510 >gi|52627366|gb|AAU84697.1| tRNA modification GTPase TrmE [Prevotella intermedia] Length = 467 Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 137/459 (29%), Positives = 238/459 (51%), Gaps = 27/459 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRY--FFGLDGRILDK 63 ETI A++T AI +IR+SG ++ + I + +L Y D + +D+ Sbjct: 12 ETICALATQP-GGAIGVIRVSGSKAIEIVDSIFSRPILNAPANTLHYGEILDKDHQTIDE 70 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 ++ ++ +P S+TGEDS E HG ++ +L L + N R A PGE+++RA+ NGK+ Sbjct: 71 VVVSIWRAPHSYTGEDSVEISCHGSAYILEQVLHRLIE-SNCRQAKPGEYTQRAYLNGKM 129 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL + E++ADLI+S + +L++ + G SS ++L I S +E +LDFS+ E+ Sbjct: 130 DLSQTEAVADLIASTNKASYKLALSQLKGHFSSELSTLRNQLLKINSLLELELDFSDHEE 189 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 ++ E++ + +++ K G+ ++NG + I+G +N GKS+L N L + + Sbjct: 190 LEFADRTELIALSEEIDRKVTTLARSFKTGQALKNGIPVAIIGKTNVGKSTLLNRLLRDN 249 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303 AIV++I GTTRD++ + + G DTAGIR+T D VE+ GI+RT +E A ++L Sbjct: 250 RAIVSNIHGTTRDIIEDTISINGVDFHFIDTAGIRKTTDYVEQLGIERTLATLEKAQIVL 309 Query: 304 LL-----KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTG---------E 349 + E K+ ++ + I + K D + T + +H +S Sbjct: 310 WVVDNEPTESEKKEILAQCTDKHLILVHNKVDDLTEPTNQQNHAATSHDSTYTYHEIAIS 369 Query: 350 GLEEL-INKIKSILSNKFKKLP-----FSIPSHKRHLYHLSQT-VRYLEMASLNEKDCGL 402 G L IN++++++ K LP +I ++ RH L++ L + Sbjct: 370 GKYNLGINQLEALIY-KVADLPEITENTTIITNARHYDALTRAHASLLRVQEAMAMSLSG 428 Query: 403 DIIAENLRLASVSLGKITG-CVDVEQLLDIIFSKFCIGK 440 D+I+E+L+ L +ITG + ++ L IF FCIGK Sbjct: 429 DLISEDLKDTISILAEITGDQITPQETLHNIFKHFCIGK 467 >gi|299135903|ref|ZP_07029087.1| tRNA modification GTPase TrmE [Acidobacterium sp. MP5ACTX8] gi|298602027|gb|EFI58181.1| tRNA modification GTPase TrmE [Acidobacterium sp. MP5ACTX8] Length = 506 Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 144/498 (28%), Positives = 234/498 (46%), Gaps = 65/498 (13%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD-----GRI 60 +TI A+ST I I+RL+GP + + + +P A R+ LD + Sbjct: 11 DTIVAISTPPGRGGIGIVRLAGPQSLPIAAQLLQLTQPL-EHARARFARVLDSADPNAKT 69 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD ++ F +P S+TG+D E HG V+ I+ A RLA PGEF++RAF + Sbjct: 70 LDDAIVTAFLAPHSYTGDDLIEIAAHGSPVVLEAIVRA-ALSHGARLATPGEFTQRAFLS 128 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS- 179 G++DL +AE++ DLI+++T Q R++ + M G +S + L H+ + +EA +DF+ Sbjct: 129 GRLDLTQAEAVHDLIAAQTLDQARVAAQQMGGAMSRRVAPAKESLLHLIALLEAGMDFAS 188 Query: 180 -EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E +DV ++ IL ++ + + + + G+++R+G + ++G NAGKSSLFN Sbjct: 189 GELDDVDVVPPSQIEAAILSVQTPLEALAASFRHGQMLRSGASLALVGRPNAGKSSLFNR 248 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR----ETDDIVEKEGIKRTFL 294 L ++D AIVT +PGTTRD + L L G +++ DTAG+R D E GI R+ Sbjct: 249 LLERDRAIVTPLPGTTRDTVEESLALGGIPLRLIDTAGLRLQGDRPADEAEALGIARSHE 308 Query: 295 EVENADLILLLKEIN---------------------------------SKKEISF-PKNI 320 + +ADL+LL+ + S K +F K Sbjct: 309 ALADADLVLLIHDATQTMTEEERTLAASLEGRPHLLVLNKIDLQGSDFSLKSTAFMSKGT 368 Query: 321 DFIFIGTKSDLYSTYTEEY-----------------DHLISSFTGEGLEELINKI-KSIL 362 +F T S L T Y L S+ TGEGLEEL I +++ Sbjct: 369 NFSSQDTSSSLKGTGFSPYIPTRQSKGALAPEGTPAPILTSALTGEGLEELRTAILRALQ 428 Query: 363 SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGC 422 + ++ + ++ + + N +++ +L A +L +TG Sbjct: 429 AEGALADSGALNNLRQQEAVATTLQALATAQAANINGLPHELMLLDLHAALRALDSLTGA 488 Query: 423 VDVEQLLDIIFSKFCIGK 440 + +L IFS FCIGK Sbjct: 489 TTTDDILGRIFSTFCIGK 506 >gi|212697394|ref|ZP_03305522.1| hypothetical protein ANHYDRO_01964 [Anaerococcus hydrogenalis DSM 7454] gi|212675586|gb|EEB35193.1| hypothetical protein ANHYDRO_01964 [Anaerococcus hydrogenalis DSM 7454] Length = 454 Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 148/457 (32%), Positives = 248/457 (54%), Gaps = 30/457 (6%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICK--KKKPFPRKAS---LRY-FFGLDGRI 60 TI A+ST ISI+R+SG F + + I K K+ R +RY DGRI Sbjct: 5 TIAAISTPQGSGGISIVRMSGDKSFDIIKKIFKPINKRALDRDKDNRMMRYGHIEKDGRI 64 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 D+ ++ P ++T ED E + HG + V IL L + LA+ GEF++RAF N Sbjct: 65 YDEVMVNFMKGPNTYTREDICEINCHGSMISVRDILNLLLDL-GCELADRGEFTKRAFLN 123 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR----SFIEADL 176 G+IDL +AE++ D+I+S E+ ++ ++ +SG L + I+++ I S IE + Sbjct: 124 GRIDLSQAEAVLDIINSTNEISQKQGLKQLSG----LLREKIEEIRKIELEALSRIEYSI 179 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 +F+E D ++ +++ + ++I+ +S G+++++G + I+G N GKSSL Sbjct: 180 NFTE--DGEDLPLDDIVEYMDRANDEITKLLSTANKGKLVKDGIETTIIGKPNVGKSSLL 237 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N L ++ AIVTDIPGTTRD +T ++L +KI+DTAGIRET D VEK G++R+ Sbjct: 238 NVLLNENRAIVTDIPGTTRDSITEYINLGNLTLKINDTAGIRETHDEVEKIGVQRSKELA 297 Query: 297 ENADLILLL----KEINSKKEI--SFPKNIDFIFIGTKSDLYSTYT-EEYDH-----LIS 344 + ADLI+ + +EI+ + +I K + I I K DL S + E++D S Sbjct: 298 QGADLIIAIFDRSREIDEEDKIILDLLKGKNAIIILNKIDLDSKISKEDFDENFTIIETS 357 Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGLD 403 + +G+++L I I +K + ++ RH L+ + L+ + + K +D Sbjct: 358 MVSRDGIDKLEGAIFDIFDSKELNKESLMITNLRHERLLNSSKEKLQSSLKDIKSFVPID 417 Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + +LR + LG I G ++++D +F +FC+GK Sbjct: 418 CVEVDLRSSYDDLGLIIGETVSDEIMDKVFREFCVGK 454 >gi|291521111|emb|CBK79404.1| tRNA modification GTPase trmE [Coprococcus catus GD/7] Length = 458 Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 148/471 (31%), Positives = 233/471 (49%), Gaps = 48/471 (10%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA-------SLRYFFGL 56 + +TI A+STG + I +RLSG + + I + P RK ++ Y + Sbjct: 2 QSDTIAAISTGMTNAGIGKVRLSGDDAVTIVDRIYRS--PGGRKRLSDVSTHTIHYGYIY 59 Query: 57 DGRIL-DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 DG L D+ ++++ P S+T ED E HGG+ V+ +LE + K RLA PGEF++ Sbjct: 60 DGDCLIDEVMVLIMRGPNSYTREDVVEIDCHGGVVVMKKLLETVLKY-GARLAEPGEFTK 118 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG+IDL +AE++ D+I+++++M S+ + G + + + +FIEA Sbjct: 119 RAFLNGRIDLSQAEAVIDVINAKSDMALESSLNQLRGSVKKSIEKLRKGIIGNIAFIEAA 178 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 LD E + F E+ + ++ + G +++ G K VILG NAGKSSL Sbjct: 179 LDDPEHIQAEGFGD-ELAVQVRGYMAELQKMLDSADNGRLVKEGIKTVILGKPNAGKSSL 237 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 N L ++ AIVT+I GTTRD L + + G + I DTAGIR+T+D+VEK G+++ Sbjct: 238 MNVLLGENRAIVTEIAGTTRDTLEEHVSIHGIPLNIIDTAGIRQTEDVVEKIGVRKAIDF 297 Query: 296 VENADLIL---------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD 340 E ADLI+ +++ I SKK I D + ++SD+ Sbjct: 298 AEEADLIIYVVDSSTEMDQNDDDIIRMIQSKKVIVLMNKSDLRPVVSRSDIEKQLQAPII 357 Query: 341 HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK---------RHLYHLSQTVRYLE 391 IS+ GL+ I + K + F+ H RH ++ + L+ Sbjct: 358 E-ISAREETGLD--------IFEDTLKDMFFAGDIHYNDELCITNVRHKAAIAAALESLK 408 Query: 392 MASLNEKDCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 M + +D G+ D + +L A LG I G + L+D IFS FC+GK Sbjct: 409 MVMHSIED-GMPEDFFSIDLMDAYEQLGHIIGEAVEDDLVDTIFSDFCMGK 458 >gi|312879308|ref|ZP_07739108.1| tRNA modification GTPase TrmE [Aminomonas paucivorans DSM 12260] gi|310782599|gb|EFQ22997.1| tRNA modification GTPase TrmE [Aminomonas paucivorans DSM 12260] Length = 472 Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 138/456 (30%), Positives = 221/456 (48%), Gaps = 26/456 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----LDGRIL 61 + I A++T I+++RLSG C + + + + P R R G +G IL Sbjct: 22 DVIAALATPWGEGGIAVLRLSGDGCTALLDRAFRGRVPLSRTEPWRMRHGHVIDPEGEIL 81 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121 D+ L + F +P+S+TGE+S E H HGG L+ L + RLA PGEF+RRAF NG Sbjct: 82 DEVLAVRFAAPKSYTGEESGELHCHGGALPAQACLDLLLSL-GARLAQPGEFTRRAFANG 140 Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181 ++DL +AE++ +I S + + + G + + + T + + +EA LDF EE Sbjct: 141 RLDLSQAEAVLSVIRSRSREALTAAGRALQGRTGEAFRDLLGRATDLAAHLEALLDFPEE 200 Query: 182 EDVQNFSS--KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 E + L + D+ G L +R G ++ ++G N GKSSL NAL Sbjct: 201 EIPPLEEGDLRAGLRSLKGRTEDLRQRCLGGML---LREGIRVGLVGRPNVGKSSLLNAL 257 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 ++ AIVT +PGTTRD++ G +++ DTAGIR + D +E GI+R +E A Sbjct: 258 LQEARAIVTPLPGTTRDLVEAVTTHRGVPLRLVDTAGIRSSADPLEALGIQRARRTLEEA 317 Query: 300 DLILLLKEINSK-----KEISFP-KNIDFIFIGTKSDLYSTYTEEYDHL---------IS 344 DL + + + +E++ + + K+DL +E +S Sbjct: 318 DLRVWVVDAGEPLTEEDRELAASLRGKTLLVARNKTDLPEAVSEAALKALVPGCAVCSVS 377 Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI 404 + G GLE L +++ +L L ++ +R + L +T L+ A+ + D Sbjct: 378 ALEGVGLEALKDRMVEVLGGS-GTLEGALSITRRQMEALDRTGEALQTAASALEASEWDA 436 Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A L A +L +TG E LLD +F +FCIGK Sbjct: 437 AAACLGEARSALAGLTGQDPGEDLLDRVFGEFCIGK 472 >gi|223040362|ref|ZP_03610637.1| tRNA modification GTPase TrmE [Campylobacter rectus RM3267] gi|222878320|gb|EEF13426.1| tRNA modification GTPase TrmE [Campylobacter rectus RM3267] Length = 439 Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 149/458 (32%), Positives = 238/458 (51%), Gaps = 44/458 (9%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI AV+T +ISIIRLSG + + K PR A+L + +G ++D+ L Sbjct: 3 DTIAAVATAHGVGSISIIRLSGADALSLALKLTKITSLVPRYATLTKIYA-EGELIDEAL 61 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 LI F +P SFTGED EF +HGG+ V N IL EL K RLA GEFS+RA NGK+D Sbjct: 62 LIYFKAPHSFTGEDVVEFQLHGGLVVANLILGELIK-NGARLARAGEFSKRALINGKMDF 120 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE--- 182 + E++ LI++++E ++ M G+L+ + +L +F+E +D+++++ Sbjct: 121 SKIEAINSLINAKSEDSVKIIARTMRGDLAKFANEIRSELVKTLAFVETSIDYADDDLPA 180 Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 D+ S+ + + + L ++ ISQ + G + G+KI I+G N GKSS+ N+L Sbjct: 181 DLLESISQMLKQNSVKLDKIVA--ISQSRKG--LLEGFKIAIVGKPNVGKSSILNSLLSF 236 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 D AI++D GTTRD + L + +LV+I DTAGIR+ +E+ GI + +E AD+I Sbjct: 237 DRAIISDEAGTTRDSIEEALKIGTHLVRIIDTAGIRKNAGKIEQIGISYSLRAIEEADVI 296 Query: 303 L------------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLIS 344 L LLK NS+K+I + N K DL + + I Sbjct: 297 LAVFDASQEADEQDSEILELLK--NSQKKIFYVLN--------KCDLGVKFASPGNP-IK 345 Query: 345 SFTGEGLEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTV-RYLEMASLNEKDCGL 402 +G E+IN +K+ L + + ++ + S+ + R L + + +E L Sbjct: 346 ICAKQGTGEVINSLKTYLDAQETSEILLNSTRQISSCEAASEAIKRALNLLAESE----L 401 Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++ A L A + IT + ++LD +FS FC+GK Sbjct: 402 ELFAYELNTAIEQISSITKPFERSEILDEMFSNFCLGK 439 >gi|323141443|ref|ZP_08076333.1| tRNA modification GTPase TrmE [Phascolarctobacterium sp. YIT 12067] gi|322414099|gb|EFY04928.1| tRNA modification GTPase TrmE [Phascolarctobacterium sp. YIT 12067] Length = 459 Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 140/469 (29%), Positives = 239/469 (50%), Gaps = 45/469 (9%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-----PFPRKA-SLRYFFGLDG 58 ++TI AV+T A+ I+R+SGP V E + K +P + + + DG Sbjct: 3 EDTISAVTTALGEGAVGIVRISGPKALAVGETLFKAASGKALGAYPVNTLAYGHVYDTDG 62 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 ++D+ L + +P S+T ED E HGG+ + IL+ L R A GEF++RAF Sbjct: 63 SLVDEVLAVYMRAPRSYTAEDVVEIQCHGGVQPLQKILQ-LTFAAGARPAEAGEFTKRAF 121 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEG----MSGELSSLYGQWIDKLTHIRSFIEA 174 NG+IDL +AE++ D+I S +E +L+ ++GEL SL Q +D + ++ EA Sbjct: 122 LNGRIDLTQAEAVMDIIRSRSEASLKLAARQQQGQLAGELRSLRKQLVDIVVNL----EA 177 Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234 +D+ EE D+++ + V + + + I ++ G+I+R G + I+G N GKSS Sbjct: 178 VIDYPEE-DIEDVTYGRVQESLSTVCSGIEHLLAHAHTGKILREGLRTAIVGRPNVGKSS 236 Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294 L NAL +++ AIV+ GTTRDV+ L L+G + ++DTAGIR TDD VEK G++++ Sbjct: 237 LLNALLREERAIVSQYAGTTRDVIEEQLLLDGVPLVLADTAGIRATDDFVEKIGVEKSRQ 296 Query: 295 EVENADLIL---------------LLKEINSKKEI------SFPKNIDFIFIGTKSDLYS 333 + +++L++ +L+ K + P+ +D + L Sbjct: 297 LLADSELVICVIDGSDGLTDEDEAILEAAAGKPCVVIVNKSDLPQQVDL------AQLRE 350 Query: 334 TYTEEYDHLISSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM 392 + + +S+ T G+E +KS + +K + + R L + + L+ Sbjct: 351 RFGADKVMTLSAKTLVGIEAFTAWLKSYVYGSKGTLGDGAYIQNARQERLLREALAGLQD 410 Query: 393 ASLNEKD-CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A +D D I ++R A LG+ITG +++++ IF +FCIGK Sbjct: 411 AEFAAQDYLPYDCIVIDVRSAIDLLGEITGDTVQDEIINEIFERFCIGK 459 >gi|157415218|ref|YP_001482474.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni 81116] gi|172047131|sp|A8FM10|MNME_CAMJ8 RecName: Full=tRNA modification GTPase mnmE gi|157386182|gb|ABV52497.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni 81116] gi|315931242|gb|EFV10213.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni 327] Length = 442 Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 151/477 (31%), Positives = 232/477 (48%), Gaps = 79/477 (16%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A++T +ISI+RLSG + + K K PR A+ F + I+D+ + Sbjct: 3 DTIAAIATAHGVGSISIVRLSGERALEFALKLSHKTKLTPRHATFTKLFNQNNEIIDEAI 62 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 +I F +P SFTGED EF HGG +V +LEEL + RLA GEFS+RA NGK+ Sbjct: 63 MIYFKAPYSFTGEDIVEFQTHGGFSVSEVLLEELVSL-GARLALAGEFSKRACLNGKMTP 121 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE---- 181 L+A ++ DLI S++ + ++ M G L L + L +F+E +D++++ Sbjct: 122 LKALNIQDLILSKSALAAKIIARNMQGNLGELLEKIRTDLVKTLAFVETSIDYADDDLPS 181 Query: 182 ---EDVQNF--SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 E + + ++L +I L SQ K G I G+KI I+G N GKSSL Sbjct: 182 DLLEQISTMCEENSKILKEIYTL--------SQSKKGLI--EGFKIAIVGKPNVGKSSLL 231 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 NAL + AIV+DI GTTRD + L +L++I DTAGIRE+ D +E+ G+ + + Sbjct: 232 NALLSYERAIVSDIAGTTRDTIEESFKLGTHLLRIIDTAGIRESKDAIEQIGVALSKKSL 291 Query: 297 ENADLILLL--------KE--------INSKKEISF-------------PKNIDFIFIGT 327 E+AD+IL + KE N+ K+I + +N +FI + Sbjct: 292 EDADIILAVFDASRVQDKEDEKIFDLLANTDKKIFWILNKSDLENVFKNTQNKNFIKLSA 351 Query: 328 KSDLYSTYTEEYDHLISSFTGEGLE----ELINKIKSILSNKFKKLPFSIPSHKRHLYHL 383 + D+ + EE + ++SF EG+ +LIN K + Sbjct: 352 QKDI-TLLKEELQNYLNSFDSEGIMVSSLDLINACK-----------------------I 387 Query: 384 SQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 S + L E L++ A L LA L + T +++LD +F FC+GK Sbjct: 388 SSEAIFRAKGLLEE--SSLELFAFELNLAINELARFTKDFQRDEILDEMFGNFCLGK 442 >gi|300727852|ref|ZP_07061232.1| tRNA modification GTPase TrmE [Prevotella bryantii B14] gi|299774900|gb|EFI71512.1| tRNA modification GTPase TrmE [Prevotella bryantii B14] Length = 454 Score = 187 bits (474), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 147/454 (32%), Positives = 241/454 (53%), Gaps = 22/454 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----LDGRIL 61 ++I A++T A AI+IIR+SG + + I + +K + +G +G + Sbjct: 4 QSICALATKA-GGAIAIIRVSGDDSIAITDQIFQGRKSLTEVKANSVHYGNIIDKEGNTI 62 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121 D L+ VF +P S+TGE+S E + HG I +V I++ L + R A PGE+++RA+ NG Sbjct: 63 DDVLISVFHAPHSYTGENSIEINCHGSIYIVKNIIQALIE-KGCRQAGPGEYTQRAYLNG 121 Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181 K+DL +AE++ADLI++ + +L++ + G SS ++L + S +E +LDFS+ Sbjct: 122 KMDLSQAEAVADLIAATNKATHKLALSQLKGHFSSELSTLREQLLKLTSLLELELDFSDH 181 Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 E+++ E+ + I++ + G ++NG + I+G +N GKS+L N L Sbjct: 182 EELEFADRSELQALAEKIDKRITTLAHSFETGRALKNGIPVAIIGKTNVGKSTLLNQLLH 241 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 ++ AIV+DI GTTRDV+ +D+ G + DTAGIR+T+D VE+ GIKR + ++E A + Sbjct: 242 EEKAIVSDIDGTTRDVIEDTIDIHGVNFRFIDTAGIRQTEDKVEQIGIKRAYQKLEEATI 301 Query: 302 IL-LLKEINSKKEI----SFPKNIDFIFIGTKSDL--YSTYTEEYDH------LISSFTG 348 +L +L SK+E+ + K I + K D+ S+Y YD IS+ G Sbjct: 302 VLWILDNQPSKEEVLDIQNRTKEKQVIILSNKMDIKPQSSYN-FYDFRPFAELQISAKEG 360 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK-DCGLDIIAE 407 G+ EL K+ I + RH L + +E K D++AE Sbjct: 361 IGITELEQKLYEASDIPEIDEDSIIVTSARHYEALIRAKESIERVIEGMKMSLSGDLLAE 420 Query: 408 NLRLASVSLGKITGC-VDVEQLLDIIFSKFCIGK 440 +LR+ L ITG + ++L IF FC+GK Sbjct: 421 DLRICLQELADITGGQITTHEVLGNIFKHFCVGK 454 >gi|256545944|ref|ZP_05473299.1| tRNA modification GTPase TrmE [Anaerococcus vaginalis ATCC 51170] gi|256398366|gb|EEU11988.1| tRNA modification GTPase TrmE [Anaerococcus vaginalis ATCC 51170] Length = 454 Score = 187 bits (474), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 149/461 (32%), Positives = 251/461 (54%), Gaps = 38/461 (8%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA--------SLRY-FFGLD 57 TI A+ST ISI+R+SG F + + I K P +A +RY D Sbjct: 5 TIAAISTPQGSGGISIVRMSGDKSFDIIKKIFK---PINNRALDKEKDNRMMRYGHIEKD 61 Query: 58 GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 GRI D+ ++ P ++T ED E + HG + V IL L M LA+ GEF++RA Sbjct: 62 GRIFDEVMVNFMKGPNTYTREDICEINCHGSMISVRDILNLLLDM-GCELADRGEFTKRA 120 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR----SFIE 173 F NG+IDL +AE++ D+I+S E+ ++ ++ +SG L + I+++ +I S IE Sbjct: 121 FLNGRIDLSQAEAVLDIINSTNELSQKQGLKHLSG----LLREKIEEIRNIELEALSRIE 176 Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233 ++F+E D ++ +++ + ++IS ++ G+++++G + I+G N GKS Sbjct: 177 YSINFTE--DGEDLPVDNIIDFMQKAYDEISKLLATANKGKLVKDGIETTIIGKPNVGKS 234 Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293 SL N L ++ AIVTDIPGTTRD +T ++L +KI+DTAGIRET D VEK G++R+ Sbjct: 235 SLLNVLLNENRAIVTDIPGTTRDSITEYINLGNLTLKINDTAGIRETHDEVEKIGVQRSK 294 Query: 294 LEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTE-EYDHLI--- 343 E+ADLI+ + + + K + + K + I I K DL S ++ ++D Sbjct: 295 ELAEDADLIIAIFDRSRKLDHEDKMILDMLKGKNAIIILNKIDLDSKISKIDFDDSFKII 354 Query: 344 --SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC- 400 S + +G+++L I I +K + ++ RH L+ + + LE +SL++ Sbjct: 355 ETSMVSRDGVDKLEGAIFDIFDSKELNKESLMITNLRHERLLNSSRKKLE-SSLDDIKAY 413 Query: 401 -GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D + +LR + LG I G ++++D +F +FC+GK Sbjct: 414 VPIDCVEVDLRSSYDDLGLIIGETVSDKIMDKVFREFCVGK 454 >gi|257470414|ref|ZP_05634505.1| tRNA modification GTPase TrmE [Fusobacterium ulcerans ATCC 49185] gi|317064622|ref|ZP_07929107.1| thiophene and furan oxidation protein THDF [Fusobacterium ulcerans ATCC 49185] gi|313690298|gb|EFS27133.1| thiophene and furan oxidation protein THDF [Fusobacterium ulcerans ATCC 49185] Length = 456 Score = 187 bits (474), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 141/462 (30%), Positives = 246/462 (53%), Gaps = 36/462 (7%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFP--RKASLRYFFGLDGR-I 60 +TI A+ST I I+R+SG + ++ F K KK + S+ Y DG+ + Sbjct: 4 DTIAAISTPRGEGGIGIVRISGNNALEILGKIFKPKSKKNIEELKNFSINYGHLYDGKNL 63 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+ L+ + +P ++T ED E + HGG + +LE + K R++ GEF+RRAF N Sbjct: 64 VDEVLVSIMKAPNTYTKEDIVEINCHGGFVITEKVLETVLK-NGARISESGEFTRRAFLN 122 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G++DL +AE++ D+I +TE LS++ + G+L G + + + I LD+ E Sbjct: 123 GRLDLTQAEAVMDIIHGKTEKSVSLSLDQLRGDLKEQIGHLKKLVLDVAAHINVVLDYPE 182 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E + + + ++ ++ + + I G++I+ G K I+G N GKSS+ N++ Sbjct: 183 E-GIDDPLPENLVGNLREVMDTTDILIRSYDKGKMIKEGIKTAIVGKPNVGKSSILNSVL 241 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 K++ AIVT + GTTRDV+ ++L+G + + DTAGIR+TDD+VE G++++ +E+AD Sbjct: 242 KEERAIVTHVAGTTRDVIEEVVNLKGIPLVLVDTAGIRKTDDLVENIGVEKSKQLIESAD 301 Query: 301 LILLL---------------KEINSKKEISFPKNIDFIFIGTKSDL-YSTYTEEYDHL-I 343 LIL + + I ++K I ID + D+ S T+ L I Sbjct: 302 LILFVVDGSRALDEEDMRIHEAIKAEKVIGILNKIDI-----REDIDLSPLTKINKWLEI 356 Query: 344 SSFTGEGLEELINK-----IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398 S+ +G++E+ + I+ + + +K+ + HK L Q++ + E Sbjct: 357 SAIKNQGIDEMEEEIYNHIIEENVEDSSQKITITNIRHKSALEKTKQSIE--NIFETIEN 414 Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++A +++ A SL ++TG + E LLD IFS FC+GK Sbjct: 415 GLPMDLMAVDIKGALDSLSEVTGEISSEDLLDHIFSNFCVGK 456 >gi|226229337|ref|YP_002763443.1| putative tRNA modification GTPase TrmE [Gemmatimonas aurantiaca T-27] gi|226092528|dbj|BAH40973.1| putative tRNA modification GTPase TrmE [Gemmatimonas aurantiaca T-27] Length = 452 Score = 187 bits (474), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 137/451 (30%), Positives = 231/451 (51%), Gaps = 21/451 (4%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK--KKKPFPRKASLRYFF--GLDGRIL 61 +TI A++T A++++RLSG + + +P R A LR + L Sbjct: 7 DTIVALATPPGRGAVALVRLSGARAVDIARALGAYDTGQPEARHA-LRAVLHDPVSREPL 65 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGG-IAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 D+ L+ F P S+TGE + E HGG IA + ++ R A PGEF+RRA N Sbjct: 66 DEVLVTWFAPPRSYTGEMTVEITTHGGHIAPMR--VQAACIAAGARPALPGEFTRRAVLN 123 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G++DLL+AE++AD+I + T ++ ++ + G LS +++ H+ + I D+DF E Sbjct: 124 GRLDLLQAEAVADIIDARTSAMQQQALTQLDGGLSRRLLALREEVVHLEALIAYDIDFPE 183 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E+D ++ + + L + + + + G ++R+G +V+ G NAGKSSLFNAL Sbjct: 184 EDD-GPIAASRITDAGERLVSSLDALLRTAPAGTMVRDGALVVLAGPPNAGKSSLFNALL 242 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 + AIVT I GTTRD + LD + +++ DTAG+R+T D +E+ GI+ + + A Sbjct: 243 GQSRAIVTPIAGTTRDAIEALLDRTPWPLRLVDTAGLRDTTDPIEQLGIEVSRRYLAQAQ 302 Query: 301 LILLLKE-----INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD-HLISSFTGEGLEEL 354 ++L + + + + ++ + + TK DL T + HL+S+ +GEGL L Sbjct: 303 VVLACGDDMESVVQTIEALAPHTAASVLAVHTKWDLIGPETTWVNIHLVSAESGEGLTSL 362 Query: 355 INKIKSILSNK--FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG---LDIIAENL 409 + I + L ++ + +RH L+ R A L+ G + A +L Sbjct: 363 LQAIDTALGATAVVSASNDAVITRERHRAGLTN-ARDEVRAFLDAWTSGALPAPVAAVHL 421 Query: 410 RLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A +L + G +D + +LD +F FCIGK Sbjct: 422 FTAREALSDLIGTIDTDDVLDRVFRDFCIGK 452 >gi|307747860|gb|ADN91130.1| tRNA modification GTPase mnmE [Campylobacter jejuni subsp. jejuni M1] Length = 442 Score = 187 bits (474), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 150/477 (31%), Positives = 232/477 (48%), Gaps = 79/477 (16%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A++T +ISI+RLSG + + K K PR A+ F + I+D+ + Sbjct: 3 DTIAAIATAHGVGSISIVRLSGERALEFALKLSHKTKLTPRHATFTKLFNQNNEIIDEAI 62 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 +I F +P SFTGED EF HGG +V +LEEL + RLA GEFS+RA NGK+ Sbjct: 63 MIYFKAPYSFTGEDIVEFQTHGGFSVSEVLLEELVSL-GARLALAGEFSKRACLNGKMTP 121 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE---- 181 L+A ++ DLI S++ + ++ M G L L + L +F+E +D++++ Sbjct: 122 LKALNIQDLILSKSALAAKIIARNMQGNLGELLEKIRTDLVKTLAFVETSIDYADDDLPS 181 Query: 182 ---EDVQNF--SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 E + + ++L +I L SQ K G + G+KI I+G N GKSSL Sbjct: 182 DLLEQISTMCEENSKILKEIYTL--------SQSKKG--LLEGFKIAIVGKPNVGKSSLL 231 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 NAL + AIV+DI GTTRD + L +L++I DTAGIRE+ D +E+ G+ + + Sbjct: 232 NALLSYERAIVSDIAGTTRDTIEESFKLGTHLLRIIDTAGIRESKDAIEQIGVALSKKSL 291 Query: 297 ENADLILLL--------KE--------INSKKEISF-------------PKNIDFIFIGT 327 E+AD+IL + KE N+ K+I + +N +FI + Sbjct: 292 EDADIILAVFDASRVQDKEDEKIFDLLANTDKKIFWILNKSDLENVFKNTQNKNFIKLSA 351 Query: 328 KSDLYSTYTEEYDHLISSFTGEGLE----ELINKIKSILSNKFKKLPFSIPSHKRHLYHL 383 + D+ + EE + ++SF EG+ +LIN K + Sbjct: 352 QKDI-TLLKEELQNYLNSFDSEGIMVSSLDLINACK-----------------------I 387 Query: 384 SQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 S + L E L++ A L LA L + T +++LD +F FC+GK Sbjct: 388 SSEAIFRAKGLLEE--SSLELFAFELNLAINELARFTKDFQRDEILDEMFGNFCLGK 442 >gi|219847583|ref|YP_002462016.1| tRNA modification GTPase TrmE [Chloroflexus aggregans DSM 9485] gi|219541842|gb|ACL23580.1| tRNA modification GTPase TrmE [Chloroflexus aggregans DSM 9485] Length = 452 Score = 186 bits (473), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 158/458 (34%), Positives = 229/458 (50%), Gaps = 31/458 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-RKASLRY--FFGLDGRILD 62 +TI A++T I IIRLSGP + I + +P R +RY G DG ++D Sbjct: 3 DTIAAIATPPGEGGIGIIRLSGPDAQSIAVKIFRPIRPGRLRSHRVRYGHVIGPDGNVID 62 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 + LL +P SFT ED E HGG V LE RLANPGEF+ RAF NG+ Sbjct: 63 EALLTFMAAPHSFTREDVIEISCHGGALPVQLTLEAALAA-GARLANPGEFTMRAFLNGR 121 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 IDL +AE+ D+I ++T ++ + G L+ L ++I A +DF EE Sbjct: 122 IDLSQAEATLDVIRAQTSAGLAVAQAQLGGWLAREVRVARAALLEPLAYITALIDFPEE- 180 Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 + V I + ++ + G ++RNG ++ ++G N GKSSL NAL + Sbjct: 181 ---GIEPQAVAAPIAQALATVERLLASAEQGIVLRNGARVALVGRPNVGKSSLLNALLRV 237 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 + AIVT IPGTTRD L +L G V + DTAG+R + D VE+ G++R + +ADL Sbjct: 238 ERAIVTPIPGTTRDTLEETANLAGVPVVLIDTAGMRNSTDPVEQIGVERAAAALASADLA 297 Query: 303 LLL----KEINSKKEISFPKNID--FIFIGTKSD---LYSTYTEEYDHLI-----SSFTG 348 LL+ + + + E D I + K D + E+ H + S+ G Sbjct: 298 LLVFDAQQPLTDEDEAMLTTTADKPTIIVWNKCDDPAILPPTAPEHPHRVAVAACSARYG 357 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSH----KRHLYHLSQTVRYLEMA--SLNEKDCGL 402 G++EL I + L LP +H RH L + YL A +LN + Sbjct: 358 HGIDELAKTIATTLLG--GTLPAVGATHLVSNPRHRAALRRAAEYLRAAQETLN-TNAAT 414 Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D++A +L A+ +LG+ITG E LLD+IFS+FCIGK Sbjct: 415 DLLAADLTGATNALGEITGETVGEDLLDVIFSRFCIGK 452 >gi|225873776|ref|YP_002755235.1| tRNA modification GTPase TrmE [Acidobacterium capsulatum ATCC 51196] gi|225794461|gb|ACO34551.1| tRNA modification GTPase TrmE [Acidobacterium capsulatum ATCC 51196] Length = 486 Score = 186 bits (473), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 147/488 (30%), Positives = 239/488 (48%), Gaps = 53/488 (10%) Query: 2 NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYF-------- 53 N ETI A+ST I I+RLSGP + E + + + P + AS R+ Sbjct: 3 NLAHETIVAISTPPGRGGIGIVRLSGPRAVPMAEALVRLRHPL-QHASARFAEIYEPSAP 61 Query: 54 --FGLDG-----RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLR 106 +G R LD+ ++ F +P S+TGED E HG V+ +L A R Sbjct: 62 GEPAAEGTSEAPRKLDEAVVTCFQAPRSYTGEDLVEIAAHGSPVVLQ-MLVRAALAQGAR 120 Query: 107 LANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLT 166 LA PGEF+ RAF +G++DL +AE++ DLI ++T Q R++ E M G LS +L Sbjct: 121 LARPGEFTERAFLSGRLDLTQAEAVRDLIDAQTLYQARVAAEQMGGALSRRVQPAKQQLV 180 Query: 167 HIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILG 226 + + +EA +DF+E+ DV + ++L I ++ + S G ++ +G + I+G Sbjct: 181 ELIALLEAGIDFAED-DVDVTPNAQILTRIDAMQPILESLHRSFARGRLVHSGLTLAIVG 239 Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEK 286 N GKSSLFN L +++ AIVT +PGTTRD+++ + L G +++ DTAG+RE D E Sbjct: 240 RPNVGKSSLFNRLVERERAIVTAMPGTTRDLVSERVSLGGIPLELVDTAGLREGADEAET 299 Query: 287 EGIKRTFLEVENADLILLLKEIN---SKKEISFPKNI---DFIFIGTKSDLYS------- 333 GI+++ + +A L++L+ E N S++E + ++ + + KSDL Sbjct: 300 IGIQKSREALADAHLVMLVVEGNTPLSEEEQALAASLAGRRALLVRNKSDLVQQKSLLDT 359 Query: 334 -------------------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374 T T S+ TGEG+ L + ++ + + Sbjct: 360 QPEALFASPPEASSEKESETVTNIRAVSTSALTGEGIAGLRETLLQMMQAEGMGSESGML 419 Query: 375 SHKRHLYHLSQTVRYLEMASLNEKDCGL--DIIAENLRLASVSLGKITGCVDVEQLLDII 432 + RH +S + L A + G+ +++ +L A L +TG + +L+ I Sbjct: 420 TSLRHHEAVSAALAALGKARAAAQ-AGIPHEMVLLDLYEALRQLDSLTGETTADDILNRI 478 Query: 433 FSKFCIGK 440 FS FCIGK Sbjct: 479 FSTFCIGK 486 >gi|227500993|ref|ZP_03931042.1| tRNA modification GTP-binding protein TrmE [Anaerococcus tetradius ATCC 35098] gi|227216766|gb|EEI82164.1| tRNA modification GTP-binding protein TrmE [Anaerococcus tetradius ATCC 35098] Length = 470 Score = 186 bits (473), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 145/461 (31%), Positives = 246/461 (53%), Gaps = 25/461 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK--KKPFPRK---ASLRYFFG 55 +N E+ TI A+ST + ISI+R+SGP +++ I + KP + +RY Sbjct: 14 VNMEERTIAAISTPSGTGGISIVRMSGPKAYEIVSQIFRPIMGKPLDKNDDNRKMRYGNI 73 Query: 56 LD--GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEF 113 +D G I+D+ ++ +P ++T ED E + HG V IL L LA GEF Sbjct: 74 IDNQGEIIDEVMVCFMKAPFTYTREDICEINCHGSFVSVKKILNLLLDR-GCDLAEAGEF 132 Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173 ++RAF NG+IDL +AE++ D+I++ ++ ++ + ++G L +L S +E Sbjct: 133 TKRAFLNGRIDLSQAEAVLDIINARNDLSQKEGINQLNGALREKINSIRQELLEALSRLE 192 Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233 ++F+E D ++ E++ + K+ I ++ G+I+R+G I+G N GKS Sbjct: 193 YSINFTE--DGEDLPKDEIIVYMDKAKDMIDKLLNTSNKGKIVRDGINTTIIGKPNVGKS 250 Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293 SL N L ++ AIVTDIPGTTRD++T + + +KI+DTAGIRETDD+VEK G+ ++ Sbjct: 251 SLLNNLLNENRAIVTDIPGTTRDLITEYISFGDFTLKINDTAGIRETDDVVEKIGVDKSI 310 Query: 294 LEVENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL----- 342 ++ +DLI+ + + + KK + + + I I K+DL + E+ Sbjct: 311 ELIDQSDLIIAIFDSSRDFDQEDKKIMDLIEGKNAIIILNKTDLSGKFDEKILKTSLPII 370 Query: 343 -ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401 S EG+++L I + + K K + ++ RH L+ + L +SL + + G Sbjct: 371 RTSMINEEGIDKLEETITEMFNTKELKRESVLITNTRHERLLNMASKKL-TSSLYDINRG 429 Query: 402 LDIIA--ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + I A +LR A LG I G ++++D +F +FC+GK Sbjct: 430 IPIDACEVDLRGAYDDLGLIIGESVSDEIMDKVFKEFCVGK 470 >gi|228473018|ref|ZP_04057775.1| tRNA modification GTPase TrmE [Capnocytophaga gingivalis ATCC 33624] gi|228275600|gb|EEK14377.1| tRNA modification GTPase TrmE [Capnocytophaga gingivalis ATCC 33624] Length = 475 Score = 186 bits (472), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 151/473 (31%), Positives = 245/473 (51%), Gaps = 46/473 (9%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK--KKKPFPRKASLRYFFGL---DGRI 60 +TI A++T AIS+IRLSG ++ + + K KP S G + ++ Sbjct: 11 DTIVALATATGVGAISVIRLSGKEAIELADKVFKTLSGKPLSEAPSHTVHLGTIKSETQV 70 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+ L +F +S+TGE EF HG + +++ L RLA GEF++RAF N Sbjct: 71 IDECLATIFKGKKSYTGEPVVEFSCHGSAYITQEVIK-LCLANGARLAQAGEFTKRAFLN 129 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GK+ L +AE++ADLI+S+++ +++++ M G +S +L + S IE +LDFSE Sbjct: 130 GKLALNQAEAVADLIASDSKASHQVALQQMRGGFTSEIEGLRQELLNFASLIELELDFSE 189 Query: 181 EEDVQNFSSKEVLNDIL-FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 E DV F+ ++ L +L +K + + G I+NG + I+G NAGKS+L N L Sbjct: 190 E-DVA-FADRKQLEQLLKRIKTTLQELVQSFSAGNAIKNGIPVAIVGKPNAGKSTLLNTL 247 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 ++ AIV+DI GTTRD + L + G + DTAGIR+T D +E G+++ +++ A Sbjct: 248 LNEERAIVSDIAGTTRDTIEETLHIAGVTFRFIDTAGIRDTRDQIEAIGVEKAKEKIKKA 307 Query: 300 DLILLL--KEINSKKEI------SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFT---- 347 ++L L ++ N+ E+ ++ K + + + K+D ++D I Sbjct: 308 QIVLYLYNEKENTTDEVVQFVGENYRKGLKILLLHNKTDNEYIGLSDFDEEIEKKLNPEE 367 Query: 348 ---GEG-----LEELIN--KIKSILSNKFKKLP----FSIPSHKRHLYHLSQTVRYLEMA 393 G G +E IN +K +LS K+L +I ++ RH L + LE Sbjct: 368 RKYGYGKLRISAKEKINIEALKKLLSFYAKELTSTESATIITNIRHYEALKNALEALEKV 427 Query: 394 SLNEKDCGL------DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + GL D++A ++R LG ITG V ++LL IFS+FCIGK Sbjct: 428 -----EEGLINHLSGDLLAIDIREVLYHLGSITGAVSNDELLGNIFSRFCIGK 475 >gi|292669286|ref|ZP_06602712.1| tRNA modification GTPase TrmE [Selenomonas noxia ATCC 43541] gi|292649127|gb|EFF67099.1| tRNA modification GTPase TrmE [Selenomonas noxia ATCC 43541] Length = 458 Score = 186 bits (471), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 139/458 (30%), Positives = 234/458 (51%), Gaps = 24/458 (5%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP------FPRKASLRYFFGLDG 58 ++TI +T I IIR+SG + + + P A + DG Sbjct: 3 EDTISQTATAPGAGGIGIIRMSGVQALPIARRVFRPAAGGVLGDMAPYTARYGHITAADG 62 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 ++D+ +L+ +P S+TGED+ E HGG V+ +L + R A GEF++RAF Sbjct: 63 SVIDECILLYMRAPHSYTGEDTVELQCHGGRVVLRAVLLRTWEA-GARPAEAGEFTKRAF 121 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG++DL AE + +LI++++ + + G S+ +L + IEA +DF Sbjct: 122 LNGRLDLARAEGVMELITAKSARAAHAARARIEGAFSAEITAVRQRLLGAIARIEAGIDF 181 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E+ D+ + + D+ + ++ G ++R G K VI+G N GKSSL NA Sbjct: 182 PED-DLPEVHTAALSADVEEASAAVRRLLAGADAGRVLREGVKTVIVGRPNVGKSSLLNA 240 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L + AIVTD+PGTTRDV+ ++ +EG +++ DTAG+R +D VE+ G++RT + + Sbjct: 241 LLGMERAIVTDVPGTTRDVIEEEIIVEGIPLRLLDTAGLRAAEDAVEQIGVRRTEEHLAD 300 Query: 299 ADLILLLKEINS------KKEISFPKNI--DFIFIGTKSDLYSTYTEEYDHL------IS 344 A+LIL + + ++ + ++ +N D + + K D + T L IS Sbjct: 301 AELILAVFDASAALTDEDRDLLARLQNTAADILVLCNKEDRSAVLTAADFALDAPVLTIS 360 Query: 345 SFTGEGLEELINKIKSILSNKFKKLP-FSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGL 402 + G GL+ L I + ++ + +L ++P+ +R + L + +L E A+ D G Sbjct: 361 AREGTGLDALRAAIAARVATREGELSDGALPNKEREVDALRRAAGHLDEAAAALAADMGT 420 Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D ++ +LR A LG+I G L+D IFS+FCIGK Sbjct: 421 DFVSIDLRAAYDILGEILGETADTDLIDRIFSEFCIGK 458 >gi|332702562|ref|ZP_08422650.1| tRNA modification GTPase mnmE [Desulfovibrio africanus str. Walvis Bay] gi|332552711|gb|EGJ49755.1| tRNA modification GTPase mnmE [Desulfovibrio africanus str. Walvis Bay] Length = 521 Score = 186 bits (471), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 110/316 (34%), Positives = 176/316 (55%), Gaps = 13/316 (4%) Query: 1 MNHE------KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF-----PRKAS 49 M+H+ ++TI A++T + I+RLSGP ++ + + P PR Sbjct: 1 MHHDTDTQDIQDTIAAIATPPGQGGVGIVRLSGPDAKRIGLAMFRATSPAFRDFTPRMLH 60 Query: 50 LRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLAN 109 G +D+ L ++ P P S+TGED E H HG AV+ +L+ + RLA Sbjct: 61 HGAILDAQGSPIDEALAVLMPGPRSYTGEDVLELHCHGSSAVLREVLDATLAL-GARLAE 119 Query: 110 PGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR 169 GEF+RRAF NG++DL +AE++A+LI++ L+ ++G L +L H+R Sbjct: 120 RGEFTRRAFLNGRLDLSQAEAVAELIAAPDRAAAHLARTRLAGLLGERVRALRTRLEHLR 179 Query: 170 SFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSN 229 + + +DF E+E V + ++ L+ + + ++ ++ + R G +V+ G N Sbjct: 180 AALCVAVDFPEDE-VDCLAPEDFLSGVRAVMAEVRGLLTSHERTRAFREGAVVVLAGPVN 238 Query: 230 AGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGI 289 AGKSSL NAL ++ AIV+D PGTTRD L + L+G V++ DTAG+RET D VE EG+ Sbjct: 239 AGKSSLLNALLGRERAIVSDTPGTTRDWLEESISLDGLPVRLVDTAGLRETADAVELEGV 298 Query: 290 KRTFLEVENADLILLL 305 +R+ +E ADL+LL+ Sbjct: 299 RRSRELLERADLVLLV 314 >gi|303247604|ref|ZP_07333875.1| tRNA modification GTPase TrmE [Desulfovibrio fructosovorans JJ] gi|302491084|gb|EFL50978.1| tRNA modification GTPase TrmE [Desulfovibrio fructosovorans JJ] Length = 465 Score = 186 bits (471), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 145/463 (31%), Positives = 225/463 (48%), Gaps = 34/463 (7%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP-FPRKASLRYFFG----LDGRI 60 +TI AV+T + I+RLSGP V + +P F R G GR+ Sbjct: 9 DTIAAVATPPGRGGVGIVRLSGPLAKAVATKLFTSARPDFAGLRPYRLHHGTVRDASGRV 68 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+ + P P S+TGED+AE HG V+ +L R A PGEF++RA+ N Sbjct: 69 LDEVMAAFMPGPGSYTGEDTAEIFCHGAPVVLAAVLAAACAA-GARPAGPGEFTKRAYLN 127 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G++DL +AE++A+LI++ + L++ +SG + + L +R+ + +DF + Sbjct: 128 GRLDLSQAEAVAELIAARGAVDASLALTRLSGGMGEAARELGRALGELRAGVCLAVDFPD 187 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 EE V+ + + + + + I + ++ G+ R G + + G NAGKSSLFNA Sbjct: 188 EE-VECQPKEAFADGVAAVMDRIDALLAAGRRARPFREGAVVALFGKVNAGKSSLFNAFL 246 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 D A+V D PGTTRD L LDL+G V+++DTAG+RET D VE G KR AD Sbjct: 247 GTDRALVADQPGTTRDYLEEGLDLDGVPVRLTDTAGLRETPDAVEAAGKKRGRDVAGRAD 306 Query: 301 LILLL----------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL-------- 342 L L + E + E P+ + + + K+DL + L Sbjct: 307 LGLYVVDGAAPYAPDPEAEALLEELGPRRV--LVVVNKADLPAAEPGAAKKLKARGLETV 364 Query: 343 -ISSFTGEGLEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL-NEKD 399 +S+ TG GL L+ ++ L + P + + R L LE+A L + Sbjct: 365 AVSARTGFGLTGLLTAMRERLTATDGPPEPAATAPNAREAASLEAA--RLELAGLVADIR 422 Query: 400 CGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G+ D++ L A+ + ITG + +L+ +FSKFCIGK Sbjct: 423 AGVPYDLLGARLETAAALVADITGETTPDDVLNAVFSKFCIGK 465 >gi|331239929|ref|XP_003332616.1| tRNA modification GTPase GTPBP3 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309311606|gb|EFP88197.1| tRNA modification GTPase GTPBP3 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 534 Score = 186 bits (471), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 113/316 (35%), Positives = 178/316 (56%), Gaps = 18/316 (5%) Query: 6 ETIFAVSTG-ALPSAISIIRLSGPSCFQVCEFICKK----------KKPFPRKASLRYFF 54 +TI+ +T L +A++IIR+ GP Q+C I + P PRKA+LR Sbjct: 26 DTIYGPATPVGLKAALAIIRIDGPQAIQLCRSITRPLNPSIPHSHLPPPAPRKATLRKLV 85 Query: 55 -GLDGRILD-KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGE 112 + +++D + LL+ F P+ + EFH+HG AV +L L+++ LRLA PGE Sbjct: 86 CPITQKVIDPEALLLRFDHPKH--AASTIEFHLHGSPAVSKSLLSTLSQLDYLRLAQPGE 143 Query: 113 FSRRAFE--NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRS 170 F+RR F+ +G +D+ + L LI +ETE QRR ++ + Y Q KL + Sbjct: 144 FTRRRFDRAHGSMDINKVLGLKHLIEAETEEQRRWAVSEFDSKFDHTYQQMRKKLKQSMA 203 Query: 171 FIEADLDFSEEEDVQNFS-SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSN 229 EA +DFSE+ + + +V++ +L L++ I++ +SQ K E I G K+ + G N Sbjct: 204 LCEAIIDFSEDGSMDDREIWNQVIDHLLDLQSTINAQLSQSKRREKISMGIKVSLYGSPN 263 Query: 230 AGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGI 289 GKS+L N L ++ AIV+ PGTTRD++ + +D G+ + +SDTAG+R + D VE+ GI Sbjct: 264 VGKSTLLNYLVNREAAIVSPYPGTTRDIIELSIDYHGFPIILSDTAGLRSSTDPVEEIGI 323 Query: 290 KRTFLEVENADLILLL 305 R + AD+ LLL Sbjct: 324 NRAKENIGKADVRLLL 339 >gi|329565809|gb|AEB92241.1| tRNA modification GTPase [Thermoanaerobacter thermohydrosulfuricus] Length = 404 Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 134/379 (35%), Positives = 209/379 (55%), Gaps = 23/379 (6%) Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 + D+ L+ + P ++T ED E + HGGI V + ILE + K RLA PGEF++RAF Sbjct: 30 VYDEVLVSIMKKPNTYTREDIVEINCHGGIVVTSKILELVLKQ-GARLAEPGEFTKRAFL 88 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NG+IDL +AE++ D+I+++T + + + + +SG + + DK+ + + + A +DF Sbjct: 89 NGRIDLSQAEAVIDIITAKTMLANKYAQKQLSGHIGQKMKELKDKIMGLLAHLLALIDFP 148 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 E+ DV+ KE+L + DI I + G +IR G K I+G N GKSSL NAL Sbjct: 149 ED-DVEELERKEMLKTAKEIVKDIDKLIVSSESGRVIREGLKTAIIGKPNVGKSSLLNAL 207 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 K++ AIVTDIPGTTRD++ ++++G +K+ DTAGIR+TD++VEK G+ ++ + A Sbjct: 208 LKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAGIRDTDELVEKIGVAKSKEVLAEA 267 Query: 300 DLIL--------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTE-EYDHL-------- 342 DLIL L KE +I KNI +F+ K DL E E +L Sbjct: 268 DLILFVLDASRELTKEDYEIFDILVGKNI--VFVLNKIDLPKKIDEKELKNLTKDGIIIE 325 Query: 343 ISSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE-MASLNEKDC 400 +S+ GL+EL + I + + I ++ RH L +Y+E + E++ Sbjct: 326 VSTVEKIGLQELEDTIYNLVFKGNINVKEDEIITNSRHKEALINAKKYMESVVEAIEREY 385 Query: 401 GLDIIAENLRLASVSLGKI 419 D+I +L A +GKI Sbjct: 386 SEDLITIDLNAALEQIGKI 404 >gi|325846391|ref|ZP_08169360.1| tRNA modification GTPase TrmE [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481575|gb|EGC84615.1| tRNA modification GTPase TrmE [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 454 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 149/460 (32%), Positives = 248/460 (53%), Gaps = 36/460 (7%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA--------SLRY-FFGLD 57 TI A+ST ISI+R+SG F + + I K P +A +RY D Sbjct: 5 TIAAISTPQGSGGISIVRMSGDKSFDIIKKIFK---PINERALDRDKDNRMMRYGHIEKD 61 Query: 58 GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 GRI D+ ++ P ++T ED E + HG + V IL L + LA+ GEF++RA Sbjct: 62 GRIYDEVMINFMKGPNTYTREDICEINCHGSMISVRDILNLLLDL-GCELADRGEFTKRA 120 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR----SFIE 173 F NG+IDL +AE++ D+I+S E+ ++ ++ +SG L + I+++ I S IE Sbjct: 121 FLNGRIDLSQAEAVLDIINSTNEISQKQGLKQLSG----LLREKIEEIRKIELEALSRIE 176 Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233 ++F+E D ++ +++ + ++I+ +S G+++++G + I+G N GKS Sbjct: 177 YSINFTE--DGEDLPLDDIVEYMDRANDEITKLLSTANKGKLVKDGIETTIIGKPNVGKS 234 Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293 SL N L ++ AIVTDIPGTTRD +T ++L +KI+DTAGIRET D VEK G++R+ Sbjct: 235 SLLNVLLNENRAIVTDIPGTTRDSITEYINLGNLTLKINDTAGIRETHDEVEKIGVQRSK 294 Query: 294 LEVENADLILLL----KEINSKKEI--SFPKNIDFIFIGTKSDLYSTYTEE---YDHLI- 343 + ADLI+ + +EI+ + +I K + I I K DL S ++E D I Sbjct: 295 ELAKGADLIIAIFDRSREIDEEDKIILDLLKGKNAIIILNKIDLDSKISKEDFDKDFTII 354 Query: 344 --SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-C 400 S + +G+++L I I +K + ++ RH L+ + L+ + + K Sbjct: 355 ETSMVSRDGIDKLEGAIFDIFDSKELNKESLMITNLRHERLLNSSKEKLQSSLKDIKSFV 414 Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D + +LR + LG I G ++++D +F +FC+GK Sbjct: 415 PIDCVEVDLRSSYDDLGLIIGETVSDEIMDKVFREFCVGK 454 >gi|310779689|ref|YP_003968022.1| tRNA modification GTPase trmE [Ilyobacter polytropus DSM 2926] gi|309749012|gb|ADO83674.1| tRNA modification GTPase trmE [Ilyobacter polytropus DSM 2926] Length = 455 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 143/460 (31%), Positives = 239/460 (51%), Gaps = 32/460 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFP--RKASLRYFFGLDGRIL 61 +TI A+ST I I+R+SG ++ F K +K + ++ Y DG +L Sbjct: 3 DTIAAISTPRGEGGIGIVRMSGDDSIKILSKVFRAKSEKKVEDLKSHTINYGHIYDGEVL 62 Query: 62 -DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 D+ ++ P+++T ED E + HGG + ILE L K R+A GEF+RRAF N Sbjct: 63 LDEVMVSFLKGPKTYTREDIVEINCHGGYLITEKILELLLK-KGARIAEQGEFTRRAFLN 121 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G++DL +AE++ D+I +T+ LS+ + G+L + G + + + + LD+ E Sbjct: 122 GRLDLTQAEAVMDIIHGKTDKSISLSLNQLRGDLKNQIGILKKMILDVAAHVNVVLDYPE 181 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E + + +++++L + I+ G++I+ G K I+G N GKSSL N + Sbjct: 182 E-GIDDPLPDNLMDNLLEVLKSSDVLIASYDKGKMIKEGVKTAIVGKPNVGKSSLLNTIL 240 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 K++ AIVT I GTTRD++ ++L+G + + DTAGIR TDD++E G+K++ ++ AD Sbjct: 241 KEERAIVTHIAGTTRDIIEEVINLKGIPLILVDTAGIRTTDDVIENIGVKKSEDLIDKAD 300 Query: 301 LILLL---------------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISS 345 L+L + ++N+ K I ID K DL IS+ Sbjct: 301 LVLFVVDGSRELEEEDIKVHDQLNADKVIGILNKIDM---ERKLDLTPLNKVGKWIEISA 357 Query: 346 FTGEGLEELINKI-KSILSNKF----KKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC 400 G+ + ++I K I+S + +KL + HK L Q V + + ++N Sbjct: 358 TENLGISNMEDEIYKYIISGQVEDSSQKLIITNVRHKSALEKTKQAVENI-LETIN-MGL 415 Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++A +L+ A SL ++TG + E LLD +FS FC+GK Sbjct: 416 PMDLMAVDLKEALDSLSEVTGEISTEDLLDHVFSNFCVGK 455 >gi|283956362|ref|ZP_06373842.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni 1336] gi|283792082|gb|EFC30871.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni 1336] Length = 442 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 148/470 (31%), Positives = 229/470 (48%), Gaps = 65/470 (13%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A++T +ISI+RLSG + + K K PR A+ F + I+D+ + Sbjct: 3 DTIAAIATAHGVGSISIVRLSGERALEFALKLSHKTKLTPRHATFTKLFNQNNEIIDEAI 62 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 +I F +P SFTGED EF HGG +V +LEEL + RLA GEFS+RA NGK+ Sbjct: 63 MIYFKAPYSFTGEDIVEFQTHGGFSVSEVLLEELVSL-GARLALAGEFSKRACLNGKMTP 121 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE--- 182 L+A ++ DLI S++ + ++ M G L L + L +F+E +D+++++ Sbjct: 122 LKALNIQDLILSKSALAAKIIARNMQGNLGELLEKIRTDLVKTLAFVETSIDYADDDLPS 181 Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 D+ S + LK + +SQ + G I G+KI I+G N GKSSL NAL Sbjct: 182 DLLEQISTMCEENSKILKEVYT--LSQSRKGLI--EGFKIAIVGKPNVGKSSLLNALLSY 237 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 + AIV+DI GTTRD + L +L++I DTAGIRE+ D +E+ G+ + +E+AD+I Sbjct: 238 ERAIVSDIAGTTRDTIEESFKLGTHLLRIIDTAGIRESKDAIEQIGVALSKKSLEDADII 297 Query: 303 LLLKEINSKKEISFPKNIDFI--------FIGTKSDLYSTY------------------- 335 L + + + ++ K D + +I KSDL + + Sbjct: 298 LAVFDASRVQDKEDEKIFDLLANTDKKIFWILNKSDLENVFKNIQNKNFIKLSAQKDITL 357 Query: 336 -TEEYDHLISSFTGEGLE----ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL 390 EE + ++SF EG+ +LIN K +S + Sbjct: 358 LKEELQNYLNSFDSEGIMVSSLDLINACK-----------------------ISSEAIFR 394 Query: 391 EMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L E L++ A L LA L + T +++LD +F FC+GK Sbjct: 395 AKGLLEE--SSLELFAFELNLAINELARFTKDFQRDEILDEMFGNFCLGK 442 >gi|329565807|gb|AEB92240.1| tRNA modification GTPase [Thermoanaerobacter thermohydrosulfuricus] gi|329565811|gb|AEB92242.1| tRNA modification GTPase [Thermoanaerobacter thermohydrosulfuricus] Length = 404 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 134/379 (35%), Positives = 209/379 (55%), Gaps = 23/379 (6%) Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 + D+ L+ + P ++T ED E + HGGI V + ILE + K RLA PGEF++RAF Sbjct: 30 VYDEVLVSIMKKPNTYTREDIVEINCHGGIVVTSKILELVLKQ-GARLAEPGEFTKRAFL 88 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NG+IDL +AE++ D+I+++T + + + + +SG + + DK+ + + + A +DF Sbjct: 89 NGRIDLSQAEAVIDIITAKTMLANKYAQKQLSGHIGQKMKELKDKIMGLLAHLLALIDFP 148 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 E+ DV+ KE+L + DI I + G +IR G K I+G N GKSSL NAL Sbjct: 149 ED-DVEELERKEMLETAKEIVKDIDKLIVSSESGRVIREGLKTAIIGKPNVGKSSLLNAL 207 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 K++ AIVTDIPGTTRD++ ++++G +K+ DTAGIR+TD++VEK G+ ++ + A Sbjct: 208 LKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAGIRDTDELVEKIGVAKSKEVLAEA 267 Query: 300 DLIL--------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTE-EYDHL-------- 342 DLIL L KE +I KNI +F+ K DL E E +L Sbjct: 268 DLILFVLDASRELTKEDYEIFDILVGKNI--VFVLNKIDLPKKIDEKELKNLTKDGIIIE 325 Query: 343 ISSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE-MASLNEKDC 400 +S+ GL+EL + I + + I ++ RH L +Y+E + E++ Sbjct: 326 VSTVEKIGLQELEDTIYNLVFKGNINVKEDEIITNSRHKEALINAKKYMESVVEAIEREY 385 Query: 401 GLDIIAENLRLASVSLGKI 419 D+I +L A +GKI Sbjct: 386 SEDLITIDLNAALEQIGKI 404 >gi|329565797|gb|AEB92235.1| tRNA modification GTPase [Thermoanaerobacter thermohydrosulfuricus] Length = 404 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 134/379 (35%), Positives = 209/379 (55%), Gaps = 23/379 (6%) Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 + D+ L+ + P ++T ED E + HGGI V + ILE + K RLA PGEF++RAF Sbjct: 30 VYDEVLVSIMKKPNTYTREDIVEINCHGGIVVTSKILELVLKQ-GARLAEPGEFTKRAFL 88 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NG+IDL +AE++ D+I+++T + + + + +SG + + DK+ + + + A +DF Sbjct: 89 NGRIDLSQAEAVIDIITAKTMLANKYAQKQLSGHIGQKMKELKDKIMGLLAHLLALIDFP 148 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 E+ DV+ KE+L + DI I + G +IR G K I+G N GKSSL NAL Sbjct: 149 ED-DVEELERKEMLKTAKEIVEDIDKLIVSSESGRVIREGLKTAIIGKPNVGKSSLLNAL 207 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 K++ AIVTDIPGTTRD++ ++++G +K+ DTAGIR+TD++VEK G+ ++ + A Sbjct: 208 LKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAGIRDTDELVEKIGVAKSKEVLAEA 267 Query: 300 DLIL--------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTE-EYDHL-------- 342 DLIL L KE +I KNI +F+ K DL E E +L Sbjct: 268 DLILFVLDASRELTKEDYEIFDILVGKNI--VFVLNKIDLPKKIDEKELKNLTKDGIIIE 325 Query: 343 ISSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE-MASLNEKDC 400 +S+ GL+EL + I + + I ++ RH L +Y+E + E++ Sbjct: 326 VSTVEKIGLQELEDTIYNLVFKGNINVKEDEIITNSRHKEALINAKKYMESVVEAIEREY 385 Query: 401 GLDIIAENLRLASVSLGKI 419 D+I +L A +GKI Sbjct: 386 SEDLITIDLNAALEQIGKI 404 >gi|298528962|ref|ZP_07016365.1| tRNA modification GTPase TrmE [Desulfonatronospira thiodismutans ASO3-1] gi|298510398|gb|EFI34301.1| tRNA modification GTPase TrmE [Desulfonatronospira thiodismutans ASO3-1] Length = 466 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 140/458 (30%), Positives = 226/458 (49%), Gaps = 29/458 (6%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL----DGRILD 62 TI A++T + I+RLSGP + E + F + + +G + +ILD Sbjct: 14 TIAAIATPMGQGGVGIVRLSGPQSLDIAEKLFVPGPRFKGFKAYKLHYGWIKNRNQQILD 73 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 + LL P+P S+T ED E + HGG AV+ G+LE L + A PGEF++RAF N + Sbjct: 74 EVLLAYMPAPYSYTREDVVEINCHGGPAVLEGVLEALYHL-GAEPAAPGEFTKRAFLNNR 132 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 +DL +AE+ ++I++ T+ L+ + + G L D L ++ + +DF EE Sbjct: 133 MDLTQAEAALEMINAPTQDGALLARDKLQGHLKERVDSLRDSLEKLKQELCLAVDFPEE- 191 Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 D++ ++ +I + + + R G +V+ G NAGKSSL NAL + Sbjct: 192 DLECLPLADLAQRTNSAVREIDQLLKAFEQNRVFREGALVVLAGRVNAGKSSLMNALLGR 251 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 + AIVT IPGTTRD L ++L+G V++ DTAG R T D +E G++ + +DL Sbjct: 252 ERAIVTSIPGTTRDYLEEAINLDGLPVRLVDTAGRRPTRDKIEMMGLETGRQLISRSDLC 311 Query: 303 LLLKEINSKKEISFPKNID---------FIFIGTKSDLYSTYTEEYDHL---------IS 344 +L+ +++ +E + P+++D + K DL S L S Sbjct: 312 ILV--LDAGQEPA-PEDLDILEEISPGKLVLAVNKQDLVSGTPGWVQDLKDKGLDLVHTS 368 Query: 345 SFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVR-YLEMASLNEKDCGL 402 + G GLE L I+S IL K + S+ + R L + + L +A ++ Sbjct: 369 ATLGHGLENLTRAIRSRILGEKRPQATSSLAPNLRQKTALDKARQELLLLADEARQEMPY 428 Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D++ L A L +ITG + + +L+ IF FCIGK Sbjct: 429 DVLGVRLDYACTFLDEITGRIVTDDILNSIFENFCIGK 466 >gi|269122893|ref|YP_003305470.1| tRNA modification GTPase TrmE [Streptobacillus moniliformis DSM 12112] gi|268314219|gb|ACZ00593.1| tRNA modification GTPase TrmE [Streptobacillus moniliformis DSM 12112] Length = 455 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 153/462 (33%), Positives = 244/462 (52%), Gaps = 37/462 (8%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGLD-GRILD 62 +TI A+ST S I I+R+SG F + FI K L Y + D G+ +D Sbjct: 4 DTIAAISTARGESGIGIVRISGDRAFDILNEIFIPYTKNKDLGNYKLNYGYIYDEGKAVD 63 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 + L+ P S+T ED E + HGG ILE + K R+A GEF++RAF NG+ Sbjct: 64 EVLVSRMKGPRSYTTEDIVEINCHGGYYTTKKILEVVLK-KGARMAEIGEFTKRAFMNGR 122 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE- 181 IDL +AE++ D+I +TE LS++ + G L ++ + I + + +D+ EE Sbjct: 123 IDLSQAEAVIDIIHGKTEKSVSLSLDQLKGSLRDQIKEFKEAFLDITAHVNVVMDYPEEG 182 Query: 182 -EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 +D ++ L ++ + K D + IS G+ I+ G K VI+G N GKS+L N L Sbjct: 183 IDDPLPLELRKKLEEV-YKKAD--TLISSYDKGKKIKEGIKTVIVGKPNVGKSTLLNTLL 239 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 +++ AIVT +PGTTRDV+ ++++G + + DTAGIRETDDIVE G+K++ +E AD Sbjct: 240 QEERAIVTSVPGTTRDVIEEIINIKGIPLVLVDTAGIRETDDIVENIGVKKSLEFIEMAD 299 Query: 301 LILLLKEINSKKEIS----------FPKNIDFIFIGTKSDL-----YSTYTEEYDHLISS 345 L+LL+ ++S KEI +I + K DL S Y IS+ Sbjct: 300 LVLLV--LDSSKEIEEEDIRVIEKILELEKQYIVLLNKIDLERKLDISKYNLNNIVEISA 357 Query: 346 FTGEGLEELINKIKSILSNK-----FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDC 400 ++++ N+I +++ ++L + HK L ++++ + + D Sbjct: 358 QNNINMDKMENEIYEFITDNEIDDSSERLILTNIRHKTALEKTKESIKNI----FDTIDM 413 Query: 401 G--LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G LD+I+ +L+ SL +ITG + E +LD IF+KFC+GK Sbjct: 414 GMPLDLISVDLKEGLDSLSEITGEITSEDVLDHIFAKFCVGK 455 >gi|329565801|gb|AEB92237.1| tRNA modification GTPase [Thermoanaerobacter thermohydrosulfuricus] Length = 404 Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 134/379 (35%), Positives = 208/379 (54%), Gaps = 23/379 (6%) Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 + D+ L+ + P ++T ED E + HGGI V + ILE + K RLA PGEF++RAF Sbjct: 30 VYDEVLVSIMKKPNTYTREDIVEINCHGGIVVTSKILELVLKQ-GARLAEPGEFTKRAFL 88 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NG+IDL +AE++ D+I+++T + + + + +SG + + DK+ + + + A +DF Sbjct: 89 NGRIDLSQAEAVIDIITAKTMLANKYAQKQLSGHIGQKMKELKDKIMGLLAHLLALIDFP 148 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 E+ DV+ KE+L + DI I + G +IR G K I+G N GKSSL NAL Sbjct: 149 ED-DVEELERKEMLETAKEIVKDIDKLIVSSESGRVIREGLKTAIIGKPNVGKSSLLNAL 207 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 K++ AIVTDIPGTTRD++ ++++G +K+ DTAGIR+TD++VEK G+ ++ + A Sbjct: 208 LKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAGIRDTDELVEKIGVAKSKEVLAEA 267 Query: 300 DLIL--------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTE-EYDHL-------- 342 DLIL L KE +I KNI +F+ K DL E E +L Sbjct: 268 DLILFVLDASRELTKEDYEIFDILVGKNI--VFVLNKIDLPKKIDEKELKNLTKDGIIIE 325 Query: 343 ISSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE-MASLNEKDC 400 +S GL+EL + I + + I ++ RH L +Y+E + E++ Sbjct: 326 VSPVEKIGLQELEDTIYNLVFKGNINVKEDEIITNSRHKEALINAKKYMESVVEAIEREY 385 Query: 401 GLDIIAENLRLASVSLGKI 419 D+I +L A +GKI Sbjct: 386 SEDLITIDLNAALEQIGKI 404 >gi|269791929|ref|YP_003316833.1| tRNA modification GTPase TrmE [Thermanaerovibrio acidaminovorans DSM 6589] gi|269099564|gb|ACZ18551.1| tRNA modification GTPase TrmE [Thermanaerovibrio acidaminovorans DSM 6589] Length = 450 Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 142/463 (30%), Positives = 232/463 (50%), Gaps = 39/463 (8%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA--SLRYFFGLD--G 58 +++ I A+ST I++IRLSG QV + + + + P ++R+ +D G Sbjct: 2 RDEQVIAAISTPFGQGGIAVIRLSGRGSAQVVDRVFRGRSPLSSSPPWTMRHGHLVDPRG 61 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 +D+ L + F +P+S+TGEDSAE H HGG V LE L RLA GEF+RRA Sbjct: 62 NPIDEVLAVHFKAPKSYTGEDSAEVHCHGGPLVAQMCLEALISA-GARLAERGEFTRRAV 120 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 N ++DL A ++ L+S ++ +M +SG + + LT S +EA LD Sbjct: 121 INRRMDLSAASAVMALVSGQSPKAVEAAMGSLSGATRRAMEELMRDLTRACSHLEATLDM 180 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E+E + + + D+ + I +G G + G ++ ++G N GKSSL N+ Sbjct: 181 PEDE-IPPLDWERLREDLSRIARGIRDLHQRGLAGMALSQGVQVTLVGRPNVGKSSLLNS 239 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L+++ AIVT IPGTTRDV+ + G +K+ DTAGIR+++D +E G+K + Sbjct: 240 LSRQARAIVTPIPGTTRDVVEAAVIHRGVPIKLLDTAGIRDSNDPIEALGVKLARETMLT 299 Query: 299 ADLILLLKEINSKKEISFPKNIDFIFIGT----------KSDLYSTYTEEYDHL------ 342 ADL +L+ + +S P D +G+ K+DL + + +D + Sbjct: 300 ADLRVLVLDGSSP-----PHREDLELLGSLDMPAAAALNKADLGTDPS--WDQVLRDARV 352 Query: 343 ----ISSFTGEGLEELIN-KIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE 397 +S+ +G+G+EEL + ++SI SN ++ H+ L LS+ L+ A + Sbjct: 353 PNVTLSALSGKGVEELKDLMVRSICSNPAVDGAVTMFRHQ--LDALSRAAEALDGALSSP 410 Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LD A+ A L G E++L+ +F FC+GK Sbjct: 411 Y---LDATAQLALEAQRHLASALGLDPTEEVLEAVFRNFCVGK 450 >gi|227485741|ref|ZP_03916057.1| tRNA modification GTP-binding protein TrmE [Anaerococcus lactolyticus ATCC 51172] gi|227236296|gb|EEI86311.1| tRNA modification GTP-binding protein TrmE [Anaerococcus lactolyticus ATCC 51172] Length = 454 Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 147/461 (31%), Positives = 241/461 (52%), Gaps = 35/461 (7%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-----PFPRKASLRYFFGLDGR- 59 +TI A+ST A ISI+R++G + I + P LRY +DG Sbjct: 3 KTIAAISTPAGTGGISIVRMTGDLTLDIINEIFRPINNRLIDPDIDNRYLRYGHIVDGEG 62 Query: 60 -ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 I+D+ ++ +P ++T ED E + HG V IL L LA PGEF++RAF Sbjct: 63 EIVDEVMVAFMKAPATYTREDVCEINCHGSFVAVREILNLLLD-KGADLAEPGEFTKRAF 121 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE---AD 175 NG+IDL +AE++ D+I+S ++ S +S L G K+ IR+ ++ A Sbjct: 122 LNGRIDLSQAEAVLDIINSTNKLS-------ASQGISQLQGSLTKKIREIRTDLKEGLAR 174 Query: 176 LDFSEE--EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233 L++S ED ++ ++ I K I S G+++++G I+G N GKS Sbjct: 175 LEYSINFTEDGEDLPVSDITAYIKTAKAKIDDLASTSNKGKLVKDGINTTIVGKPNVGKS 234 Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293 SL N L ++ AIVTDIPGTTRD++T + L + +KI+DTAGIR+TDD+VEK G+ ++ Sbjct: 235 SLLNVLLDENRAIVTDIPGTTRDLITEYISLGDFTLKINDTAGIRDTDDLVEKIGVDKSI 294 Query: 294 LEVENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTEE-YDH----L 342 ++ +DLIL + +++ KK + + + + I K+DL + E+ +D + Sbjct: 295 ELIDESDLILAIFDMSRDFDEEDKKILDLIRGKNALLILNKADLEGKFDEKIFDVNLPII 354 Query: 343 ISSFTGE-GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401 +S + G+ +L + I+ I K K + ++ RH L ++ SLN+ + G Sbjct: 355 KTSMVDQLGIRKLEDTIRDIFDTKEIKRESVLITNTRHERLLKSAKEKIDQ-SLNDMEAG 413 Query: 402 LDIIAENLRLASV--SLGKITGCVDVEQLLDIIFSKFCIGK 440 + I A + L+S LG I G +++D +F +FC+GK Sbjct: 414 IPIDACEVDLSSAYEDLGLIIGESVSGEIMDKVFKEFCVGK 454 >gi|149012956|ref|ZP_01833845.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP19-BS75] gi|147763109|gb|EDK70050.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP19-BS75] Length = 285 Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 106/284 (37%), Positives = 171/284 (60%), Gaps = 7/284 (2%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----- 55 + E +TI A+ST AI I+RLSG + F + + I K K + AS +G Sbjct: 2 ITREFDTIAAISTPLGEGAIGIVRLSGTNSFAIAQKIFKGKD-LSQVASHTLNYGHIVDP 60 Query: 56 LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 L G+++D+ ++ SP++FT ED E + HGGIAV N IL+ LA RLA PGEF++ Sbjct: 61 LTGKVMDEVMIGAMKSPKTFTREDIIEINTHGGIAVTNEILQ-LAIREGARLAEPGEFTK 119 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG++DL +AE++ D+I ++T+ ++++ + G LS L ++ + + +E + Sbjct: 120 RAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVN 179 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +D+ E +DV+ ++ V + + +++ + + G+I+R G I+G N GKSSL Sbjct: 180 IDYPEYDDVEEATTAVVREKTMEFEQLLTNLLRTARRGKILREGISTAIIGRPNVGKSSL 239 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 N L ++D AIVTDI GTTRDV+ +++ G +K+ DTAGIRE Sbjct: 240 LNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRE 283 >gi|220905227|ref|YP_002480539.1| tRNA modification GTPase TrmE [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869526|gb|ACL49861.1| tRNA modification GTPase TrmE [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 468 Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 142/475 (29%), Positives = 234/475 (49%), Gaps = 51/475 (10%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF-PRKASLRYFFGLDGRI---- 60 +TI A++T + I+R+SGP Q + + P P+ + R +F GR+ Sbjct: 5 DTIAAIATPPGSGGVGIVRISGPEAKQT---LARMFLPLSPKFENFRPWFLHRGRVVDWN 61 Query: 61 ---LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 LD L + P P SFTGED AE H HGG +V +LE ++ R A GEFSRRA Sbjct: 62 GENLDDVLAVFMPGPRSFTGEDVAEIHCHGGPFIVQSVLEAALRL-GARQAQQGEFSRRA 120 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NG++DL +AE++A+LI++ + R + + G L+ +L +R + +D Sbjct: 121 FINGRMDLSQAEAVAELIAAPSREALRYGLNRLDGLLARRTETLRRELEDLRMQVCVAVD 180 Query: 178 FSEEE----DVQNFSSK-EVLNDILFLKNDISSHISQG-KLGEIIRNGYKIVILGHSNAG 231 F E+E D FS+ E + L H+ QG + +++ G +V+ G NAG Sbjct: 181 FPEDEVEGMDAPTFSAAVEKVASAL-------RHLLQGSRRARVMQQGAVVVLAGAVNAG 233 Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR 291 KSSL NAL ++ A+VTDIPGTTRD L DL G V+++DTAG+R+ + +E+ G++R Sbjct: 234 KSSLMNALLGRNRALVTDIPGTTRDFLEEACDLGGLPVRLTDTAGLRKAAESIEEMGVER 293 Query: 292 TFLEVENADLILLL----------------KEINSKKEISFPKNIDFIFIGTKSDLY--S 333 + ++ AD ++L+ + +++ + + + K DL S Sbjct: 294 SRQKLAEADAVVLVLDGGVLGEAGAAAATCPDPAAREVLELAGATPVLVVWNKCDLCTPS 353 Query: 334 TYTEEYDH-----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388 + + S+F+ +E++ ++++L ++ Sbjct: 354 VFPPRWIQGQTCCTTSAFSDTQVEDMAESLRALLLAGGGGAAAEEGLAPNARQSMALEAA 413 Query: 389 YLEMASLNEK-DCG--LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E+A+L E D G D A L +A+ L ++TG ++LD +FS+FCIGK Sbjct: 414 LAELAALREDVDAGRSYDCCAVRLDVAAAHLAEVTGLSSPAEVLDRVFSQFCIGK 468 >gi|260592851|ref|ZP_05858309.1| tRNA modification GTPase TrmE [Prevotella veroralis F0319] gi|260535221|gb|EEX17838.1| tRNA modification GTPase TrmE [Prevotella veroralis F0319] Length = 463 Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 140/466 (30%), Positives = 239/466 (51%), Gaps = 45/466 (9%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK--KKPFPRKASLRYFFGL----DGR 59 +TI A++T AI ++R+SG ++ E + + KKP +G+ DG+ Sbjct: 12 DTITALATQP-GGAIGVVRVSGAKAIELTEKVFRGVGKKPLHEAKGNTLHYGVIVDKDGK 70 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 +D L+ VF +P S+TGEDS E HG V+N +++ L R A PGE+++RA+ Sbjct: 71 EIDDVLVSVFRAPHSYTGEDSTEVSCHGSAYVLNQVVKALID-AGCRQARPGEYTQRAYL 129 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NGK+DL +AE++ADLI++ ++++ + G SS + D+L + S +E +LDFS Sbjct: 130 NGKMDLSQAEAVADLIAATNRASHQVALSQLKGHFSSELSKLRDQLLKMTSLLELELDFS 189 Query: 180 EEEDVQNFSSKEVLNDIL-FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 + E+++ F+ + L + + IS I + G ++ G + I+G +N GKS+L N Sbjct: 190 DHEELE-FADRGQLKALAETIHERISVLIKSFETGNALKRGVPVAIIGKTNVGKSTLLNC 248 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L ++ AIV++I GTTRDV+ +++G + DTAG+R TDD VE+ GI+R++ ++ Sbjct: 249 LLHEEKAIVSNIHGTTRDVIEDTTEIQGITFRFIDTAGLRNTDDQVEQLGIERSYKKLAE 308 Query: 299 ADLILLLKEINSK-KEIS----FPKNIDFIFIGTKSD------------------LYSTY 335 A +IL + + + E+S + I + K D + + Y Sbjct: 309 ARIILWVVDTPPRTSELSDMQARCEGKSLILVRNKVDESAAEEVSASDSPCPVVAISAKY 368 Query: 336 TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL 395 D LE+LI +I + + H L ++++R + + +L Sbjct: 369 KRNIDQ---------LEQLIYTSANIPEINENSVIITSVRHYEALTRANESIRRV-IEAL 418 Query: 396 NEKDCGLDIIAENLRLASVSLGKITGC-VDVEQLLDIIFSKFCIGK 440 G D+I+E+LR+ L ITG + ++L IF FCIGK Sbjct: 419 ATNLSG-DLISEDLRICLNELADITGGQITPHEVLGNIFKHFCIGK 463 >gi|212546265|ref|XP_002153286.1| mitochondrial GTPase (Mss1), putative [Penicillium marneffei ATCC 18224] gi|210064806|gb|EEA18901.1| mitochondrial GTPase (Mss1), putative [Penicillium marneffei ATCC 18224] Length = 579 Score = 184 bits (466), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 106/259 (40%), Positives = 153/259 (59%), Gaps = 29/259 (11%) Query: 60 ILDKGLLIV-FPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN-------------L 105 +LD G L++ FPSP + TGED E HVHGG A V +L + K + + Sbjct: 19 LLDPGALVLYFPSPRTVTGEDVLELHVHGGPATVKAVLAAIEKCNDVIKSDEDNVSSSLI 78 Query: 106 RLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKL 165 R A PGEF+RRAF N +DL + E+L + +++ETE QRRL++ G + LS+ Y W +L Sbjct: 79 RYAEPGEFTRRAFMNDVLDLPQIEALGETLNAETEQQRRLAVRGANNTLSARYEDWRQQL 138 Query: 166 THIRSFIEADLDFSEEEDVQNF--SSKEVLNDIL----FLKNDISSHISQGKLGEIIRNG 219 + R +EA +DFSE+ Q+F S +E+++ + L+ I HI GE++RNG Sbjct: 139 LYARGELEALIDFSED---QHFDESPQELISSVSTQVDVLRQQIRFHIQNASKGELLRNG 195 Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 KI +LG NAGKSSL N + K+ AIV+ GTTRD++ + +DL G+ KI D AG+R Sbjct: 196 IKIALLGAPNAGKSSLLNRVVGKEAAIVSTEEGTTRDIVDVGIDLGGWYCKIGDMAGLRS 255 Query: 280 TDD------IVEKEGIKRT 292 + + VE EGI+R Sbjct: 256 SKNNAERIGAVELEGIRRA 274 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 23/43 (53%), Positives = 31/43 (72%), Gaps = 4/43 (9%) Query: 402 LDII--AENLRLASVSLGKITG--CVDVEQLLDIIFSKFCIGK 440 +DI+ AENLR A+ SL +ITG DVE +L ++F KFC+GK Sbjct: 537 VDIVTAAENLRFAAESLAQITGRGGADVEDVLGVVFEKFCVGK 579 >gi|32265609|ref|NP_859641.1| tRNA modification GTPase TrmE [Helicobacter hepaticus ATCC 51449] gi|32261657|gb|AAP76707.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449] Length = 476 Score = 184 bits (466), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 142/465 (30%), Positives = 244/465 (52%), Gaps = 42/465 (9%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66 TI A++T AISI+RLSG + + + K+ PR A L + + +D+ L+ Sbjct: 23 TIVAIATPIGVGAISIVRLSGEKAYHIALALTHKESLKPRYAHLCHIYDAQQMPIDEALV 82 Query: 67 IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126 + FP P S+T +D E HGGI I++ K+ R+A GEF++RAF G++DL Sbjct: 83 LYFPKPYSYTTQDVCEVQCHGGIVSARAIVQLCLKL-GARMAQAGEFAKRAFLGGRLDLA 141 Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186 + +++A LI S++ ++ M + G+L + + + L I +F E +D+SEE V+ Sbjct: 142 QVQAVAGLIQSQSLEANKILMRQLKGDLGTFVNRTRENLLEILAFSEVHIDYSEE--VEE 199 Query: 187 FSSKEVLNDILFLKNDISS--HISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 +++ + +++N++S HIS + + I GY + I+G N GKSSL NAL + + Sbjct: 200 SYIRDIQQKLAYVENELSHIYHISLTR--QSIIEGYTLSIIGKPNVGKSSLLNALLRYER 257 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIV++I GTTRD + L ++G L++I DTAGIRE+DD +E+ GI +T + +++I+ Sbjct: 258 AIVSEIEGTTRDTIEEMLTIKGSLLRIVDTAGIRESDDKIEQIGILKTKEALMRSNIIVA 317 Query: 305 L--------KEINSKKEI--SFPKNIDFIFIGTKSDLYSTYTEEYD-------------- 340 + E + EI + +N + I KSDL EE Sbjct: 318 IFDGSRPFDAEDKAIMEILKTQCQNKYILVIINKSDLPLQCEEELLHNLLRLHNKALLCM 377 Query: 341 --HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLN 396 HL + + EG+++++ ++ ++S + S Y L + LE + + N Sbjct: 378 PLHLSTKY--EGVQKVLECLEEVVSTHNGDESMILTSS----YQLDCIKKALECIVKAHN 431 Query: 397 EKDCG-LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D G L++ + ++ S+ KIT + +LLD +F+ FC+GK Sbjct: 432 VLDIGQLELFSYQIQDCIESICKITHPYENAELLDRLFATFCLGK 476 >gi|329565793|gb|AEB92233.1| tRNA modification GTPase [Thermoanaerobacter thermohydrosulfuricus] gi|329565813|gb|AEB92243.1| tRNA modification GTPase [Thermoanaerobacter thermohydrosulfuricus] Length = 404 Score = 184 bits (466), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 134/379 (35%), Positives = 208/379 (54%), Gaps = 23/379 (6%) Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 + D+ L+ + P ++T ED E + HGGI V + ILE + K RLA PGEF++RAF Sbjct: 30 VYDEVLVSIMKKPNTYTREDIVEINCHGGIVVTSKILELVLKQ-GARLAEPGEFTKRAFL 88 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NG+IDL +AE++ D+I+++T + + + + +SG + + DK+ + + A +DF Sbjct: 89 NGRIDLSQAEAVIDIITAKTMLANKYAQKQLSGHIGQKMKELKDKIMGLLVHLLALIDFP 148 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 E+ DV+ KE+L + DI I + G +IR G K I+G N GKSSL NAL Sbjct: 149 ED-DVEELERKEMLETAKEIVKDIDKLIVSSESGRVIREGLKTAIIGKPNVGKSSLLNAL 207 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 K++ AIVTDIPGTTRD++ ++++G +K+ DTAGIR+TD++VEK G+ ++ + A Sbjct: 208 LKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAGIRDTDELVEKIGVAKSKEVLAEA 267 Query: 300 DLIL--------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTE-EYDHL-------- 342 DLIL L KE +I KNI +F+ K DL E E +L Sbjct: 268 DLILFVLDASRELTKEDYEIFDILVGKNI--VFVLNKIDLPKKIDEKELKNLTKDGIIIE 325 Query: 343 ISSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE-MASLNEKDC 400 +S+ GL+EL + I + + I ++ RH L +Y+E + E++ Sbjct: 326 VSTVEKIGLQELEDTIYNLVFKGNINVKEDEIITNSRHKEALINAKKYMESVVEAIEREY 385 Query: 401 GLDIIAENLRLASVSLGKI 419 D+I +L A +GKI Sbjct: 386 SEDLITIDLNAALEQIGKI 404 >gi|291536994|emb|CBL10106.1| tRNA modification GTPase trmE [Roseburia intestinalis M50/1] Length = 411 Score = 184 bits (466), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 141/413 (34%), Positives = 225/413 (54%), Gaps = 27/413 (6%) Query: 49 SLRYFFGLDG-RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRL 107 ++ Y DG ++D+ ++++ +P+S+T ED+ E HGG+ V+ +LE + K R Sbjct: 5 TIHYGHIKDGDEVIDEVMVVLMRAPKSYTKEDTVEIDCHGGVYVMKRVLETVIKY-GARP 63 Query: 108 ANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTH 167 A PGEF++RAF NG+IDL +AES+ D+I ++ E + S + +SG LS+ + +KL H Sbjct: 64 AEPGEFTKRAFLNGRIDLAQAESVIDIIHAKNEFALKSSEQQLSGSLSAAVRKVREKLLH 123 Query: 168 IRSFIEADLDFSEEEDVQNFSSKEVLNDILF-LKNDISSHISQGKLGEIIRNGYKIVILG 226 +FIE+ LD E + + E L+ I+ + +I ++ G+I++ G VI+G Sbjct: 124 EIAFIESALDDPEHISLDGYP--ETLHGIVEEAQKEIQKLLANSDNGKILKEGISTVIIG 181 Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEK 286 NAGKSSL N L ++ AIVTDI GTTRDVL ++L G ++ + DTAGIRETDD+VEK Sbjct: 182 KPNAGKSSLLNTLVGEERAIVTDIAGTTRDVLEEQINLNGIILNVIDTAGIRETDDVVEK 241 Query: 287 EGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLYSTYTEE-- 338 G+ R + ADL + + + +++ + + K+ I + KSDL E Sbjct: 242 IGVDRAKKYLNEADLAIYVVDTSTQLDENDFEIMELLKDRKAIVLLNKSDLTPVTDSESI 301 Query: 339 YDHL------ISSFTGEGLEELINKIKSILSNKFKKLPFS---IPSHKRHLYHLSQTVRY 389 HL IS+ G+EE I+ + ++ F+ ++ RH L + Sbjct: 302 RKHLDKKMIAISAKEQTGIEEFEETIREMFFT--GEVTFNDEVYITNIRHKTALQEARNS 359 Query: 390 LEMASLNEKDCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L + + D G+ D + +L A LG I G + L++ IFSKFC+GK Sbjct: 360 LNLVVQSILD-GMPEDFYSIDLMNAYEELGSIVGEAVEDDLVNEIFSKFCMGK 411 >gi|329565799|gb|AEB92236.1| tRNA modification GTPase [Thermoanaerobacter thermohydrosulfuricus] gi|329565803|gb|AEB92238.1| tRNA modification GTPase [Thermoanaerobacter thermohydrosulfuricus] gi|329565805|gb|AEB92239.1| tRNA modification GTPase [Thermoanaerobacter thermohydrosulfuricus] Length = 404 Score = 184 bits (466), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 134/379 (35%), Positives = 208/379 (54%), Gaps = 23/379 (6%) Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 + D+ L+ + P ++T ED E + HGGI V + ILE + K RLA PGEF++RAF Sbjct: 30 VYDEVLVSIMKKPNTYTREDIVEINCHGGIVVTSKILELVLKQ-GARLAEPGEFTKRAFL 88 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NG+IDL +AE++ D+I+++T + + + + +SG + + DK+ + + A +DF Sbjct: 89 NGRIDLSQAEAVIDIITAKTMLANKYAQKQLSGHIGQKMKELKDKIMGLLVHLLALIDFP 148 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 E+ DV+ KE+L + DI I + G +IR G K I+G N GKSSL NAL Sbjct: 149 ED-DVEELERKEMLETAKEIVEDIDKLIVSSESGRVIREGLKTAIIGKPNVGKSSLLNAL 207 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 K++ AIVTDIPGTTRD++ ++++G +K+ DTAGIR+TD++VEK G+ ++ + A Sbjct: 208 LKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAGIRDTDELVEKIGVAKSKEVLAEA 267 Query: 300 DLIL--------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTE-EYDHL-------- 342 DLIL L KE +I KNI +F+ K DL E E +L Sbjct: 268 DLILFVLDASRELTKEDYEIFDILVGKNI--VFVLNKIDLPKKIDEKELKNLTKDGIIIE 325 Query: 343 ISSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE-MASLNEKDC 400 +S+ GL+EL + I + + I ++ RH L +Y+E + E++ Sbjct: 326 VSTVEKIGLQELEDTIYNLVFKGNINVKEDEIITNSRHKEALINAKKYMESVVEAIEREY 385 Query: 401 GLDIIAENLRLASVSLGKI 419 D+I +L A +GKI Sbjct: 386 SEDLITIDLNAALEQIGKI 404 >gi|205829161|sp|Q7VJY2|MNME_HELHP RecName: Full=tRNA modification GTPase mnmE Length = 467 Score = 184 bits (466), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 142/465 (30%), Positives = 244/465 (52%), Gaps = 42/465 (9%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66 TI A++T AISI+RLSG + + + K+ PR A L + + +D+ L+ Sbjct: 14 TIVAIATPIGVGAISIVRLSGEKAYHIALALTHKESLKPRYAHLCHIYDAQQMPIDEALV 73 Query: 67 IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126 + FP P S+T +D E HGGI I++ K+ R+A GEF++RAF G++DL Sbjct: 74 LYFPKPYSYTTQDVCEVQCHGGIVSARAIVQLCLKL-GARMAQAGEFAKRAFLGGRLDLA 132 Query: 127 EAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQN 186 + +++A LI S++ ++ M + G+L + + + L I +F E +D+SEE V+ Sbjct: 133 QVQAVAGLIQSQSLEANKILMRQLKGDLGTFVNRTRENLLEILAFSEVHIDYSEE--VEE 190 Query: 187 FSSKEVLNDILFLKNDISS--HISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 +++ + +++N++S HIS + + I GY + I+G N GKSSL NAL + + Sbjct: 191 SYIRDIQQKLAYVENELSHIYHISLTR--QSIIEGYTLSIIGKPNVGKSSLLNALLRYER 248 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIV++I GTTRD + L ++G L++I DTAGIRE+DD +E+ GI +T + +++I+ Sbjct: 249 AIVSEIEGTTRDTIEEMLTIKGSLLRIVDTAGIRESDDKIEQIGILKTKEALMRSNIIVA 308 Query: 305 L--------KEINSKKEI--SFPKNIDFIFIGTKSDLYSTYTEEYD-------------- 340 + E + EI + +N + I KSDL EE Sbjct: 309 IFDGSRPFDAEDKAIMEILKTQCQNKYILVIINKSDLPLQCEEELLHNLLRLHNKALLCM 368 Query: 341 --HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLN 396 HL + + EG+++++ ++ ++S + S Y L + LE + + N Sbjct: 369 PLHLSTKY--EGVQKVLECLEEVVSTHNGDESMILTSS----YQLDCIKKALECIVKAHN 422 Query: 397 EKDCG-LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D G L++ + ++ S+ KIT + +LLD +F+ FC+GK Sbjct: 423 VLDIGQLELFSYQIQDCIESICKITHPYENAELLDRLFATFCLGK 467 >gi|167770827|ref|ZP_02442880.1| hypothetical protein ANACOL_02180 [Anaerotruncus colihominis DSM 17241] gi|167666867|gb|EDS10997.1| hypothetical protein ANACOL_02180 [Anaerotruncus colihominis DSM 17241] Length = 456 Score = 184 bits (466), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 131/458 (28%), Positives = 232/458 (50%), Gaps = 25/458 (5%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYF---FGL---- 56 E +TI A++T I I+R+SGP F E I + K R +SL + +GL Sbjct: 3 EIDTIAAIATPLGTGGIGIVRISGPDAFGTAERIVRLAKG-GRVSSLAGYTCAYGLAADQ 61 Query: 57 DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 +G I D+ ++ F P S+TGED E HGG+ +++ +L K R A GEF++R Sbjct: 62 EGPI-DEVIVTAFRGPHSYTGEDIVEISAHGGVYLMDRLLNACCK-NGARPALAGEFTKR 119 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NGK+DL +AE++ DLIS+ R ++ G L G+ D+LT+ + + A + Sbjct: 120 AFLNGKLDLTQAEAVIDLISAHGGQAARAALSARGGALYRCVGEIADRLTYFAAHLSAWI 179 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D+ EEE ++ + D+ + S + G ++R G + VI+G N GKSSL Sbjct: 180 DYPEEE-IEAVDPNALQCDLAKCLQRLDSLAGSYETGRLVREGIETVIVGRPNVGKSSLM 238 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N + +IV+DIPGTTRD+++ + G++ ++DTAGIR+ DD +E+EG+ ++ Sbjct: 239 NLMTGVKRSIVSDIPGTTRDLVSDTVLCGGFVFHLTDTAGIRKPDDPIEQEGVGLALEQI 298 Query: 297 ENADLILLLKE------INSKKEISFPKNIDFIFIGTKSDL-----YSTYTEEYDH--LI 343 E A L+L + + + ++ + + ++ + + K+DL + ++ LI Sbjct: 299 ERAQLVLAVFDGSEPLTGDDRRVMEACRGLNALALVNKADLTQVLDAQAFASDFKRVLLI 358 Query: 344 SSFTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL 402 S+ ++ L + ++ F + + ++ ++ E E Sbjct: 359 SAHDTNIIKPLTEALTEMVGLGAFDSSAAIVANTRQRAAVMAAAGELREAVEALENGVSY 418 Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D +A + A +L ++TG + ++D +FS+FC+GK Sbjct: 419 DAVAVCIERALDALLELTGKRASQAVVDSVFSRFCVGK 456 >gi|255321603|ref|ZP_05362761.1| tRNA modification GTPase TrmE [Campylobacter showae RM3277] gi|255301459|gb|EET80718.1| tRNA modification GTPase TrmE [Campylobacter showae RM3277] Length = 439 Score = 184 bits (466), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 141/448 (31%), Positives = 236/448 (52%), Gaps = 24/448 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 ETI AV+T +ISIIRLSG + + K PR A+L + +G ++D+ L Sbjct: 3 ETIAAVATAHGVGSISIIRLSGSGALGLALKLTKITSLIPRYATLTKIYA-EGELIDEAL 61 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 LI F +P SFTGED EF +HGG+ V N IL EL K RLA GEFS+RA NGK+D Sbjct: 62 LIYFKAPHSFTGEDVVEFQLHGGLVVANLILGELIK-NGARLARAGEFSKRALINGKMDF 120 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE--- 182 + E++ LI++++E ++ M G+L+ + +L +F+E +D+++++ Sbjct: 121 SKIEAINSLINAKSEDSVKIIARTMRGDLAKFANEIRSELVKTLAFVETSIDYADDDLPA 180 Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 D+ S+ + + L ++ ISQ + G + G+KI I+G N GKSS+ N+L Sbjct: 181 DLLESISQMLKQNSAKLDKIVA--ISQSRKG--LLEGFKIAIVGKPNVGKSSILNSLLSY 236 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 + AI++D GTTRD + L + +LV+I DTAGIR+ +E+ GI + ++ AD+I Sbjct: 237 ERAIISDEAGTTRDSIEEALKIGTHLVRIIDTAGIRKNAGKIEQIGISYSLRAIKEADVI 296 Query: 303 LLL--------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEEL 354 L + ++ N E+ ++ K DL + ++ I +G +E+ Sbjct: 297 LAIFDASQEADEQDNEILELLKRSQKKIFYVLNKCDLGVKFISP-ENPIKICAKQGTDEI 355 Query: 355 INKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTV-RYLEMASLNEKDCGLDIIAENLRLA 412 I+ +K+ L + + ++ + S+ + R L + + +E L++ A L A Sbjct: 356 ISNLKTYLDAQETSEILLNSTRQISSCEAASEAIKRALNLLAGSE----LELFAYELNTA 411 Query: 413 SVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + IT + ++LD +FS FC+GK Sbjct: 412 IEQISSITKPFERSEILDEMFSNFCLGK 439 >gi|242278542|ref|YP_002990671.1| tRNA modification GTPase TrmE [Desulfovibrio salexigens DSM 2638] gi|242121436|gb|ACS79132.1| tRNA modification GTPase TrmE [Desulfovibrio salexigens DSM 2638] Length = 483 Score = 184 bits (466), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 147/459 (32%), Positives = 230/459 (50%), Gaps = 30/459 (6%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF-----PRKASLRYFFGLDGRIL 61 TI A++T + IIR+SG + + I K P D + Sbjct: 30 TIAAIATPPGDGGVGIIRISGEQALSIAKDIFHPAKDSFSGFKPYTMHYGTIVDADSVEI 89 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEE-LAKMPNLRLANPGEFSRRAFEN 120 D L + P P S+TGED+ E + HGG A+++ +L E LAK RLAN GEF+ RAF N Sbjct: 90 DDVLTVFMPGPNSYTGEDTVEINCHGGRAILSAVLGEVLAK--GARLANAGEFTLRAFLN 147 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G++DL +AE++A++I + + +L+ +SG L +L +R+ + +DF E Sbjct: 148 GRMDLTQAEAVAEMIHAPSRGAAQLAKVKLSGVLGERISGLRLRLEELRAQLCVAVDFPE 207 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 +E ++ +++ +++ +IS +S + + R G V+ G NAGKSSL NAL Sbjct: 208 DE-LECLPLEQMQSEVGDAVKNISEILSGVERTKAWREGGLAVLSGKVNAGKSSLLNALL 266 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDIPGTTRD + L+L+G V++ DTAG+RET D VE G+ AD Sbjct: 267 GRNRAIVTDIPGTTRDFIEETLNLDGLQVRVVDTAGLRETSDAVELAGVDMGRDLASQAD 326 Query: 301 LILLLKEINSKKEISF----PKNIDF----IFIGTKSDLYSTYTEE--------YDHL-I 343 L+LL+ I+ K + P+ D + + KSDL Y+ + I Sbjct: 327 LVLLI--IDGSKPFALADLDPQFADMADKCLAVINKSDLEQADPSPAVIMRESGYEVVEI 384 Query: 344 SSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQT-VRYLEMASLNEKDCG 401 S+ G+G+E L I+ IL + P + + R L + V E+ Sbjct: 385 SAKKGQGIERLAALIREHILQGAGEPDPDELVPNSRQAASLKKAHVELEELMGDIAMQVP 444 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D++ L A SL +ITG + +++L+ IF FC+GK Sbjct: 445 YDLLGVRLESACSSLSEITGEITPQEVLNSIFENFCVGK 483 >gi|325478822|gb|EGC81932.1| tRNA modification GTPase TrmE [Anaerococcus prevotii ACS-065-V-Col13] Length = 455 Score = 184 bits (466), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 144/457 (31%), Positives = 240/457 (52%), Gaps = 23/457 (5%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK-------KKKPFPRKASLRYFFGL 56 E+ TI A+ST + ISI+R+SG +++ + I + + RK GL Sbjct: 2 EERTIAAISTPSGTGGISIVRMSGNKSYEIIKEIFRPIAGKEIDRDEDNRKMRYGNIIGL 61 Query: 57 DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 DG I+D+ ++ P ++T ED E + HG V IL L LA GEF++R Sbjct: 62 DGEIIDEVMVCFMKGPYTYTREDICEINCHGSFVSVKKILNLLLD-KRCDLAEGGEFTKR 120 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NG+IDL +AE++ D+I++ E+ ++ + ++G L L S +E + Sbjct: 121 AFLNGRIDLSQAEAVLDIINATNELSQKEGVNQLNGALREKINDIRKSLLEALSRLEYSI 180 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 +F+E D ++ S E++ + K+ I +S G+I+R+G I+G N GKSSL Sbjct: 181 NFTE--DGEDLSPDEIIKYMDDAKSMIDRLLSTSNKGKILRDGINTTIIGKPNVGKSSLL 238 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 N L ++ AIVTDIPGTTRD++T + + +K++DTAGIR+T+D+VEK G+ ++ V Sbjct: 239 NNLLNENRAIVTDIPGTTRDLITEYISFGDFTLKVNDTAGIRDTEDLVEKIGVDKSIELV 298 Query: 297 ENADLILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYTE-----EYDHLISS 345 + +DLI+ + + + KK +S + I I K DL + E E+ + +S Sbjct: 299 DKSDLIIAIFDTSRDFDEEDKKILSLINGKNAIIILNKLDLSPKFDESKLGSEHKIVKTS 358 Query: 346 FTG-EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ-TVRYLEMASLNEKDCGLD 403 T EG++ L I + K K + ++ RH L + +++ E + ++ LD Sbjct: 359 MTNEEGIDLLEAAITEMFDTKDLKRESVLITNTRHERLLKEASLKLNESLTDIKRGIPLD 418 Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +LR A LG I G ++++D +F +FC+GK Sbjct: 419 ACEVDLRGAYDDLGLIIGESVSDEIMDKVFKEFCVGK 455 >gi|149197584|ref|ZP_01874634.1| tRNA modification GTPase [Lentisphaera araneosa HTCC2155] gi|149139154|gb|EDM27557.1| tRNA modification GTPase [Lentisphaera araneosa HTCC2155] Length = 452 Score = 183 bits (465), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 149/464 (32%), Positives = 241/464 (51%), Gaps = 36/464 (7%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LDG 58 M+H+ TI A++T A +I+IIR+SG V + + + K R G +D Sbjct: 1 MDHD--TIAALAT-APGGSIAIIRVSGLDALSVAKKVWRGKTNLENNER-RLVLGQMIDP 56 Query: 59 RIL---DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 D+ + + P+++TGED EF HGG L K GEF++ Sbjct: 57 ETQEPGDQAMAVYMKGPQTYTGEDVVEFQCHGGNFTAKHTLMCTLKAGARAAEA-GEFTK 115 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSF 171 RAF NGK+DL +AE++ D+IS+ +E ++++ ++G E+ S+Y D L+ + + Sbjct: 116 RAFVNGKLDLTQAEAVMDVISAGSEKAMQIAVNQLNGRFGNEIRSMY----DGLSDLLAE 171 Query: 172 IEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQG-KLGEIIRNGYKIVILGHSNA 230 E +DF +E+ N++ E +N L + + + + +G K GE++R+G K++I G NA Sbjct: 172 CEVRMDFVDED--LNWTPPETMNKTLNDASTLMAKLLEGRKDGEVLRDGVKVIIGGPPNA 229 Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIK 290 GKSSL N + +D AIVTDI GTTRD L + G +KI+DTAGIRE +DIVE+ GI+ Sbjct: 230 GKSSLMNHVLGRDRAIVTDIAGTTRDTLEEYTRIRGIPLKITDTAGIREAEDIVERTGIE 289 Query: 291 RTFLEVENADLILLLKEINSKKEISFP-----KNIDFIFIGTKSD------LYSTYTEEY 339 R+ ++ A LIL L +++ E P + I I KSD L S + + + Sbjct: 290 RSKQALKEAQLILWLMDLSRPLEDQLPPEDFKSDAPLIVILNKSDIALEQELPSYFNQSH 349 Query: 340 -DHLISSFTGE-GLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396 H+ S E L L + I +++ +P + + RH L Q V+ ++ Sbjct: 350 VSHVRVSVKSEDNLNRLYDLIEEAVWQEDHHHIP-DVAVNARHGVLLEQAVQQIDDCQAC 408 Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++++ +LR A LG+I G + +L IF ++CIGK Sbjct: 409 IDGEAWELVSVHLRGALDPLGEILGLTLMPDILHTIFGRYCIGK 452 >gi|329565815|gb|AEB92244.1| tRNA modification GTPase [Thermoanaerobacter thermohydrosulfuricus] Length = 404 Score = 183 bits (465), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 134/379 (35%), Positives = 207/379 (54%), Gaps = 23/379 (6%) Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 + D+ L+ + P ++T ED E + HGGI V + ILE + K RLA PGEF++RAF Sbjct: 30 VYDEVLVSIMKKPNTYTREDIVEINCHGGIVVTSKILELVLKQ-GARLAEPGEFTKRAFL 88 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NG+IDL +AE++ D+I+++T + + + +SG + + DK+ + + + A +DF Sbjct: 89 NGRIDLSQAEAVIDIITAKTMLANKYPQKQLSGHIGQKMKELKDKIMGLLAHLLALIDFP 148 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 E+ DV+ KE+L + DI I + G +IR G K I+G N GKSSL NAL Sbjct: 149 ED-DVEELERKEMLETAKEIVEDIDKLIVSSESGRVIREGLKTAIIGKPNVGKSSLLNAL 207 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 K++ AIVTDIPGTTRD++ ++++G +K+ DTAGIR+TD++VEK G+ ++ + A Sbjct: 208 LKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAGIRDTDELVEKIGVAKSKEVLAEA 267 Query: 300 DLIL--------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTE-EYDHL-------- 342 DLIL L KE +I KNI +F+ K DL E E +L Sbjct: 268 DLILFVLDASRELTKEDYEIFDILVGKNI--VFVLNKIDLPKKIDEKELKNLTKDGIIIE 325 Query: 343 ISSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE-MASLNEKDC 400 +S GL+EL + I + + I ++ RH L +Y+E + E++ Sbjct: 326 VSPVEKIGLQELEDTIYNLVFKGNINVKEDEIITNSRHKEALINAKKYMESVVEAIEREY 385 Query: 401 GLDIIAENLRLASVSLGKI 419 D+I +L A +GKI Sbjct: 386 SEDLITIDLNAALEQIGKI 404 >gi|332296911|ref|YP_004438833.1| tRNA modification GTPase mnmE [Treponema brennaborense DSM 12168] gi|332180014|gb|AEE15702.1| tRNA modification GTPase mnmE [Treponema brennaborense DSM 12168] Length = 509 Score = 183 bits (465), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 143/493 (29%), Positives = 239/493 (48%), Gaps = 79/493 (16%) Query: 20 ISIIRLSGPSCFQVCEFICKKKKPFPRKA--SLRYFFGLDG-----RILDKGLLIVFPSP 72 + IIR SG C ++ + + + A +L Y + +D R +D+ L+ VF +P Sbjct: 24 LGIIRTSGKGCIELVAALFSRPEALRNAAGNTLVYGWIVDPAGGGVRRIDEVLISVFRAP 83 Query: 73 ESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLA 132 +SFTGED AE HGG A+V GI L + R A GEF+ RAF NGK DL AE++ Sbjct: 84 KSFTGEDMAEICCHGGPAIVTGIYRLLTEN-GFRAAQHGEFTFRAFINGKADLTRAEAVH 142 Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192 ++IS++T+ R + ++G L +L + +EA++++ E+E+ + + Sbjct: 143 EIISAKTDESRGRAAGRLAGSLYDEISAVKKELVATLASVEAEIEYPEDEE----TIADA 198 Query: 193 LNDILF--LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250 +D ++ +++S S ++ ++G ++V+ G +NAGKSSLFN L K++ AIV+DI Sbjct: 199 FDDTRLRRVETELASLCSSWASEKLYQDGARVVLCGRTNAGKSSLFNMLLKEERAIVSDI 258 Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD---------- 300 GTTRD L G ++ DTAG+RETDD+VE+ G++RTF ++AD Sbjct: 259 HGTTRDWLESWASFGGIPARLFDTAGLRETDDVVEQSGVRRTFDLTKDADLILYVVDAVE 318 Query: 301 ----------------------LILLLKEINSKKEISFPKNIDFIFIGT---KSDLYSTY 335 LIL+L + + E + + T +D + + Sbjct: 319 GITDEDESFLTAFAAAPNVRTPLILILNKCDKLSESGDSAAMHAATMNTATMNTDAATRH 378 Query: 336 TEEYDHL------------------------ISSFTGEGLEELINKIKSIL----SNKFK 367 T ++ +S+ TG G L IK+ L S + Sbjct: 379 TAAFNSAGSTTAEDFTSNAALGSFSPAAAVRLSAKTGSGTAALTKAIKACLTAAASTDRE 438 Query: 368 KLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQ 427 + K+ +VR+ +A+ ++ LD +A+++ A +LG+ITG V + Sbjct: 439 QPGLGSARQKQCAQDALDSVRHALLAA--RQNYPLDAVAQDMEDALDALGEITGAVTPDD 496 Query: 428 LLDIIFSKFCIGK 440 +LD +FS FC+GK Sbjct: 497 ILDTVFSNFCLGK 509 >gi|329565795|gb|AEB92234.1| tRNA modification GTPase [Thermoanaerobacter thermohydrosulfuricus] Length = 404 Score = 183 bits (464), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 134/379 (35%), Positives = 207/379 (54%), Gaps = 23/379 (6%) Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 + D+ L+ + P ++T ED E + HGGI V + ILE + K RLA PGEF++RAF Sbjct: 30 VYDEVLVSIMKKPNTYTREDIVEINCHGGIVVTSKILELVLKQ-GARLAEPGEFTKRAFL 88 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NG+IDL +AE++ D+I+++T + + + + +SG + + DK+ + + A +DF Sbjct: 89 NGRIDLSQAEAVIDIITAKTMLANKYAQKQLSGHIGQKMKELKDKIMGLLVHLLALIDFP 148 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 E+ DV+ KE+L + DI I + G +IR G K I+G N GKSSL NAL Sbjct: 149 ED-DVEELERKEMLETAKEIVKDIDKLIVSSESGRVIREGLKTAIIGKPNVGKSSLLNAL 207 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 K++ AIVTDIPGTTRD++ ++++G +K+ DTAGIR+TD++VEK G+ ++ + A Sbjct: 208 LKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAGIRDTDELVEKIGVAKSKEVLAEA 267 Query: 300 DLIL--------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTE-EYDHL-------- 342 DLIL L KE +I KNI +F+ K DL E E +L Sbjct: 268 DLILFVLDASRELTKEDYEIFDILVGKNI--VFVLNKIDLPKKIDEKELKNLTKDGIIIE 325 Query: 343 ISSFTGEGLEELINKIKS-ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE-MASLNEKDC 400 +S GL+EL + I + + I ++ RH L +Y+E + E++ Sbjct: 326 VSPVEKIGLQELEDTIYNLVFKGNINVKEDEIITNSRHKEALINAKKYMESVVEAIEREY 385 Query: 401 GLDIIAENLRLASVSLGKI 419 D+I +L A +GKI Sbjct: 386 SEDLITIDLNAALEQIGKI 404 >gi|320537537|ref|ZP_08037479.1| tRNA modification GTPase TrmE [Treponema phagedenis F0421] gi|320145619|gb|EFW37293.1| tRNA modification GTPase TrmE [Treponema phagedenis F0421] Length = 467 Score = 183 bits (464), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 144/456 (31%), Positives = 230/456 (50%), Gaps = 51/456 (11%) Query: 22 IIRLSGPSCFQVCEFICKKKKPFPRKASLR--------YFFGLD-GRILDKGLLIVFPSP 72 I+R SG +C + + + F R A+L+ Y + +D G+ LD+ + +V+ +P Sbjct: 26 IVRTSGKTCIE------RVSRFFSRPAALQKAPGNSIVYGWIIDAGKKLDEVVALVYRAP 79 Query: 73 ESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLA 132 +SFTGE+ E HGG+ V L L R A GEFS R+F NGK DL AE++A Sbjct: 80 KSFTGENCIEIICHGGVQTVKS-LYRLCLDSGFRAAEKGEFSFRSFINGKTDLTGAEAIA 138 Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE-EEDVQNFSSKE 191 ++I ++T + L+ +SG L + +KL + IE ++++ E EE + + Sbjct: 139 EIIGAKTLQAQTLAAGRLSGNLFAELQAIKEKLLTALAAIEVEIEYPEDEETIADAFDTA 198 Query: 192 VLNDILFLKNDISSHISQGKLGE-IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250 +L + L ++ + + GE I + G +IV+ G +N+GKSSLFNAL K+D AIV+DI Sbjct: 199 LLEEPLTRLQELEAS----RAGEKIFQEGVRIVLAGKTNSGKSSLFNALLKEDRAIVSDI 254 Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310 GTTRD L D+D G VK+ DTAGIRET D +E G++R+ + AD + L + + Sbjct: 255 HGTTRDWLETDIDFSGIPVKLFDTAGIRETSDTIEAIGVQRSLDLLAEADAVFYLADGRT 314 Query: 311 KKEISFPKNIDFIFIGTKS------------------------DLYSTYTEEYDHL-ISS 345 K P++ DFI TK L + +E+ + I S Sbjct: 315 KLS---PEDKDFIVQNTKPLIVVRSRAALMTDGEKDYALKEMRALSAQAKKEFSCICIDS 371 Query: 346 FTGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI 404 T EG+ L+ ++++ K S+ + ++ + + LD Sbjct: 372 KTMEGVGALVQTTAALITEGKPATSDISLGTERQKIAVQQAAAAAKHALHAARQGFPLDA 431 Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 I +++ + LG+ITG V + +LD IFS FC+GK Sbjct: 432 IVQDIEESLAFLGEITGEVRSDDILDKIFSGFCVGK 467 >gi|149919106|ref|ZP_01907590.1| tRNA modification GTPase TrmE [Plesiocystis pacifica SIR-1] gi|149820036|gb|EDM79457.1| tRNA modification GTPase TrmE [Plesiocystis pacifica SIR-1] Length = 445 Score = 183 bits (464), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 142/452 (31%), Positives = 229/452 (50%), Gaps = 36/452 (7%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLL 66 TI V+TG ++I+RLSGP+ + + + P PR A+LR + ++ L+ Sbjct: 12 TIVGVATGRPDGGVAIVRLSGPAARTIAAAMLTGELPEPRVAALRRLV-----LGERALV 66 Query: 67 IVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLL 126 + P P SFTGED E HVHGG V ++E A PG+F+RRAFE+G++ L Sbjct: 67 LDMPGPRSFTGEDVVELHVHGGERNVGQVVEAALAA-GASPAGPGDFTRRAFEHGRLSLD 125 Query: 127 EAESLADLISSETE----MQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 +AE +A +I ++T+ RRL ++GEL +L +R +EA+LDF E Sbjct: 126 QAEGIAAIIGAQTQGALDQARRL----VAGELGRAVEAVHGRLRLLRVEVEANLDFPE-- 179 Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 DV L+ ++ +++ + G R ++V+ G NAGKSSLFNAL + Sbjct: 180 DVSAADEARFAETAASLRVELEGWLARFEGGRRARERARVVLAGPPNAGKSSLFNALLGR 239 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEVENADL 301 A+V+ GTTRD + +L+LE V + DTAG+RE ++D +E G+ ++ AD+ Sbjct: 240 SRALVSPTAGTTRDFVEAELELE-RSVALVDTAGLREASEDAIELAGVALGQDQLAGADV 298 Query: 302 ILLLK--------EINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEE 353 ++ L+ E ++ + I K+DL S +S+ TG GL++ Sbjct: 299 VIWLEGADQPALAESERQRWLEGADTATVIPALAKADLDSPRVVAGWLSLSAHTGAGLDD 358 Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGLDIIAENLRLA 412 L + + + + + RH ++ V L E+ + + GL+++A +L +A Sbjct: 359 LRRALADAVRPGEQWIGLA-----RHRQCAAEAVEALGEVEAQLREGLGLELVAFSLAVA 413 Query: 413 SVSLGKITGCVDV----EQLLDIIFSKFCIGK 440 LG ITG + E++L IFS FCIGK Sbjct: 414 QTRLGAITGHTGLGPVGEEVLHAIFSSFCIGK 445 >gi|297570497|ref|YP_003691841.1| tRNA modification GTPase TrmE [Desulfurivibrio alkaliphilus AHT2] gi|296926412|gb|ADH87222.1| tRNA modification GTPase TrmE [Desulfurivibrio alkaliphilus AHT2] Length = 474 Score = 183 bits (464), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 139/423 (32%), Positives = 217/423 (51%), Gaps = 29/423 (6%) Query: 46 RKASLRYFFGLD---GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKM 102 R LRY + ++ GR LD+ + + +P ++T ED E H HGG V+ IL + Sbjct: 53 RSHQLRYGWIVEPESGRPLDEVMAVYMAAPATYTREDVVEIHGHGGYVVLREILGLILAR 112 Query: 103 PNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWI 162 +R A GEF++RAF NG+IDL AE++ D++++ T L+M + G L Sbjct: 113 EGVRAAEAGEFTKRAFLNGRIDLTRAEAVLDVLNAGTREGLNLAMSQLQGGLQQQLEPVR 172 Query: 163 DKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDI-LFLKNDISSHISQGKLGEIIRNGYK 221 L + + +E +DF +E D + + + + L ++ + + + G I R G Sbjct: 173 RALLEVLAVVEVAIDFPDE-DAEIIDTAALGRRLELEVRQPLQELLERADRGRIFREGAT 231 Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 +VILG N GKSSL NAL + + AIVT IPGTTRD + L++ G ++I DTAGIRET Sbjct: 232 VVILGRPNVGKSSLLNALLQDERAIVTAIPGTTRDTIEECLNIHGMPLRIVDTAGIRETT 291 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK---KEISFPKNI---DFIFIGTKSDLYS-- 333 + VE GI+R+ V ADL+LLL E S+ ++++ ++ + + K DL Sbjct: 292 EEVEGIGIERSRRRVAEADLVLLLVEAGSEPSSEDMALFDSVREKKVLVVVNKLDLLGDA 351 Query: 334 ------TYTEEYDHL--------ISSFTGEGLEELINKIKSILSNKFKKLP-FSIPSHKR 378 + H IS+ GLE+L + + ++S + P ++ + R Sbjct: 352 SPAAAEAALAAWRHRFPGRELTGISARARVGLEQLEDLVFRLISGDEPRDPGYACVPNAR 411 Query: 379 HLYHLSQTVRYLEMASLN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFC 437 H L++T+ LE +++A L+ SLG+I G V E+LLD IFS FC Sbjct: 412 HRAALARTLPALERVQQGLAAGLAPELLAVELQACLGSLGEIIGEVGSEELLDTIFSSFC 471 Query: 438 IGK 440 IGK Sbjct: 472 IGK 474 >gi|71028036|ref|XP_763661.1| tRNA modification GTPase [Theileria parva strain Muguga] gi|68350615|gb|EAN31378.1| tRNA modification GTPase, putative [Theileria parva] Length = 562 Score = 182 bits (463), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 108/332 (32%), Positives = 184/332 (55%), Gaps = 30/332 (9%) Query: 1 MNHEKETIFAVSTGALP---SAISIIRLSGPSCFQVCEFICKKKKPFPRKASL----RYF 53 +N ETI+ +S+G +P A+++IR+SGP+ + K P K + + Sbjct: 47 LNVLNETIYGLSSG-VPEGGCAVAVIRISGPNSLHTLNLLTKNSDNVPYKPRFVKLCKLY 105 Query: 54 FGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN-----LRLA 108 ++ ++D L + F SP S+TG+D E H HG ++ + + + N LR A Sbjct: 106 SLINNNLIDDALTLYFKSPNSYTGDDVVEIHTHGNEVIIKELFDNFRHIANNYNIKLRQA 165 Query: 109 NPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHI 168 GEF+RRA+ + K++L++ ES+ +LI S+ +Q++ SM ++ L +Y +W ++L I Sbjct: 166 EKGEFTRRAYYSNKLNLIQVESINELIRSKNYIQKQNSMLKLNNSLCEIYKRWSNELIDI 225 Query: 169 RSFIEADLDFSEEE--DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILG 226 S +E +DF EE D+ +LN I L +I I+ K E I +G K+++LG Sbjct: 226 ISKVEGSIDFQEESCSDIILKDKSSILNPIQNLTEEIFKFINDKK--ETIVDGIKLLLLG 283 Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET------ 280 +N+GKSS N L D++IV++IPGTTRD++ ++ +L+G +I+D+AGI Sbjct: 284 PTNSGKSSFINNLFNDDISIVSNIPGTTRDLIRVNYNLDGLNYQITDSAGINNRILDGDT 343 Query: 281 -------DDIVEKEGIKRTFLEVENADLILLL 305 +D +E GIK+ E+E +++IL L Sbjct: 344 NATESLDNDTIELIGIKKALNEIETSNVILFL 375 >gi|282934246|ref|ZP_06339523.1| tRNA modification GTPase TrmE [Lactobacillus jensenii 208-1] gi|281301720|gb|EFA93987.1| tRNA modification GTPase TrmE [Lactobacillus jensenii 208-1] Length = 332 Score = 182 bits (463), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 118/316 (37%), Positives = 182/316 (57%), Gaps = 26/316 (8%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD---G 58 E +TI A+ST ISI+RLSG ++ + K K + AS +G +D Sbjct: 6 EFDTIAAISTPIGEGGISIVRLSGEDAVKIANKLFKGK-DLSKVASHTINYGHIIDPETS 64 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 +++D+ ++ V +P++FT ED E + HGGI V N IL+ L K R+A GEF++RAF Sbjct: 65 KVVDEVMVSVLLAPKTFTKEDMVEINCHGGIVVTNKILQLLLKH-GARMAEAGEFTKRAF 123 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR-------SF 171 NG+IDL +AES+ D++ ++T+ R+++M + L G +DK+ ++R + Sbjct: 124 VNGRIDLTQAESVMDIVRAKTDKARQVAM-------NQLEGGLLDKIRNMRQEILDTLAN 176 Query: 172 IEADLDFSE--EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSN 229 +E ++D+ E + V +E ++ N + +QGK I+RNG I+G N Sbjct: 177 VEVNIDYPEYDADQVTATQMQETSKKVIEAINRLLKTANQGK---IMRNGLATAIVGRPN 233 Query: 230 AGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGI 289 GKSSL N L + D AIVTD+ GTTRD L + + G +K+ DTAGI T+D VEK G+ Sbjct: 234 VGKSSLLNYLTQDDKAIVTDVAGTTRDTLEEYVSIRGVPLKLIDTAGIHHTEDKVEKIGV 293 Query: 290 KRTFLEVENADLILLL 305 +R+ +E ADL+LLL Sbjct: 294 ERSKKAIEQADLVLLL 309 >gi|205829164|sp|Q6APY7|MNME_DESPS RecName: Full=tRNA modification GTPase mnmE Length = 467 Score = 182 bits (463), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 145/479 (30%), Positives = 236/479 (49%), Gaps = 60/479 (12%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----LDGR 59 + ETI A+ST I +IR+SG + + I + S + ++G DG Sbjct: 7 DNETIAAISTPMGTGGIGVIRISGKESLTILQTIFRPHNDSCSYRSHQMYYGQIVAADGH 66 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 LD+ L++ +P+++T ED E H HG V+ +LE L LA PGEF++RAF Sbjct: 67 QLDEVLVVYMRAPKTYTCEDIVEIHCHGNFLVLQNVLE-LVIEKGASLAEPGEFTKRAFF 125 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NG+IDL +AE++ D++S++T ++ E ++G L + L H+R+ E +DF Sbjct: 126 NGRIDLTKAEAVIDVLSAKTRKGVDVAQEQLAGSLYRRIEPIRNALVHMRALFEVAIDFP 185 Query: 180 EE-EDVQNFSSKEVLNDILFLKNDISSHISQ----GKLGEIIRNGYKIVILGHSNAGKSS 234 ++ D+ ++ + L LK ++ + + + G I R G +VI G N GKSS Sbjct: 186 DQSHDIVDYEQID-----LQLKTEVIAPVKELLAGVDRGRIYRQGISMVIAGRPNVGKSS 240 Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294 L NA+ +++ A+VT I GTTRD + +D+ G V+I DTAGIR VE GI+R Sbjct: 241 LLNAVLQEERALVTSIAGTTRDSIEEMVDILGMPVRIVDTAGIRRQAGEVEALGIQRAKD 300 Query: 295 EVENADLIL---------------LLKEINSKKEISFPKNIDFIF-IGTKSD-LYSTYTE 337 + +ADL+L L ++I K I+ +D + GT + L Sbjct: 301 LINSADLVLFMVDGSRQLDQSDLELYEDIAHKPMIAVINKLDLLAEDGTAAAALLDFVPA 360 Query: 338 EYDHL-ISSFTGEGLEELINKIKSILSNK---------------FKKLPFSIPSHKRHLY 381 L IS+ GEGLE L I ++++ K L ++ + +R + Sbjct: 361 SVPRLAISAREGEGLEALKQAIFTVVTGSDTPWDEEGCAPNLRHKKSLEATLIAAERMVD 420 Query: 382 HLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L+Q + ++ S++ ++C LD LG I G + + D+IFS+FC+GK Sbjct: 421 DLAQGMGSSDLLSIDMQEC-LD-----------QLGDIIGITTTDDVFDVIFSEFCLGK 467 >gi|159481624|ref|XP_001698878.1| hypothetical protein CHLREDRAFT_121098 [Chlamydomonas reinhardtii] gi|158273370|gb|EDO99160.1| predicted protein [Chlamydomonas reinhardtii] Length = 465 Score = 182 bits (463), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 143/462 (30%), Positives = 227/462 (49%), Gaps = 56/462 (12%) Query: 19 AISIIRLSGPSCFQVCEFICKKKKPFPR------KASLRYFFG--LDG--RILDKGLLIV 68 ++SIIRLSG + K +P R AS R ++G +DG +LD+ LL+V Sbjct: 20 SVSIIRLSGTEAVPIA---LKAFRPGGRFRIGWSPASHRVYYGTAVDGDENVLDEVLLLV 76 Query: 69 FPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEA 128 SP S+T ED EFH HGG + L + R A PGEF+ RAF NG++DL +A Sbjct: 77 MLSPRSYTAEDVVEFHCHGGGVCAARVQRALIEA-GARPAKPGEFTLRAFLNGRLDLAQA 135 Query: 129 ESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFS 188 ES+++L+ + T ++ G+ G + S + + + +EA LDF +ED+ Sbjct: 136 ESVSELVGARTAAAADSALAGLRGGVGSAVSDMRRQCLDLLAELEARLDF--DEDLPPID 193 Query: 189 SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVT 248 + + I ++ I + + G ++R G ++ I+G N GKSSL NA D AIVT Sbjct: 194 VPALKSQIEAIQAGIEKALRTARAGSLLRRGLQVAIVGRPNVGKSSLLNAWTNSDRAIVT 253 Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE- 307 +I GTTRDVL L + G V + DTAGIR++ D+VE+ G++R+ AD+++++ + Sbjct: 254 EIAGTTRDVLEAQLSVGGVPVTLLDTAGIRDSTDVVERIGVERSQAAAAAADVVIMVVDS 313 Query: 308 ----INSKKEI--SFPKNIDFIFIGTKSDL------------YSTYTEEYDHLISSFTG- 348 ++ EI S + + + K DL ST++ S G Sbjct: 314 AEGWTDADTEIYRSLWGDGPALLVANKDDLRAAGAAIQLVERQSTFSATVRTSASQRKGL 373 Query: 349 ----------EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398 G +L + ++ + SH+ L LS++V Sbjct: 374 ESLDAALLDLAGAPQLAASGGVSWAVNERQAEALVRSHE-ALMRLSESV---------AA 423 Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D LD +LR A ++LG+++G E++LD +FS+FCIGK Sbjct: 424 DLPLDFWTIDLRSALLALGEVSGDEVAEEVLDNVFSRFCIGK 465 >gi|51244709|ref|YP_064593.1| tRNA modification GTPase TrmE [Desulfotalea psychrophila LSv54] gi|50875746|emb|CAG35586.1| probable tRNA modification GTPase (TrmE) [Desulfotalea psychrophila LSv54] Length = 501 Score = 182 bits (463), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 145/479 (30%), Positives = 236/479 (49%), Gaps = 60/479 (12%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG----LDGR 59 + ETI A+ST I +IR+SG + + I + S + ++G DG Sbjct: 41 DNETIAAISTPMGTGGIGVIRISGKESLTILQTIFRPHNDSCSYRSHQMYYGQIVAADGH 100 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 LD+ L++ +P+++T ED E H HG V+ +LE L LA PGEF++RAF Sbjct: 101 QLDEVLVVYMRAPKTYTCEDIVEIHCHGNFLVLQNVLE-LVIEKGASLAEPGEFTKRAFF 159 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NG+IDL +AE++ D++S++T ++ E ++G L + L H+R+ E +DF Sbjct: 160 NGRIDLTKAEAVIDVLSAKTRKGVDVAQEQLAGSLYRRIEPIRNALVHMRALFEVAIDFP 219 Query: 180 EE-EDVQNFSSKEVLNDILFLKNDISSHISQ----GKLGEIIRNGYKIVILGHSNAGKSS 234 ++ D+ ++ + L LK ++ + + + G I R G +VI G N GKSS Sbjct: 220 DQSHDIVDYEQID-----LQLKTEVIAPVKELLAGVDRGRIYRQGISMVIAGRPNVGKSS 274 Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294 L NA+ +++ A+VT I GTTRD + +D+ G V+I DTAGIR VE GI+R Sbjct: 275 LLNAVLQEERALVTSIAGTTRDSIEEMVDILGMPVRIVDTAGIRRQAGEVEALGIQRAKD 334 Query: 295 EVENADLIL---------------LLKEINSKKEISFPKNIDFIF-IGTKSD-LYSTYTE 337 + +ADL+L L ++I K I+ +D + GT + L Sbjct: 335 LINSADLVLFMVDGSRQLDQSDLELYEDIAHKPMIAVINKLDLLAEDGTAAAALLDFVPA 394 Query: 338 EYDHL-ISSFTGEGLEELINKIKSILSNK---------------FKKLPFSIPSHKRHLY 381 L IS+ GEGLE L I ++++ K L ++ + +R + Sbjct: 395 SVPRLAISAREGEGLEALKQAIFTVVTGSDTPWDEEGCAPNLRHKKSLEATLIAAERMVD 454 Query: 382 HLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L+Q + ++ S++ ++C LD LG I G + + D+IFS+FC+GK Sbjct: 455 DLAQGMGSSDLLSIDMQEC-LD-----------QLGDIIGITTTDDVFDVIFSEFCLGK 501 >gi|153952344|ref|YP_001397952.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. doylei 269.97] gi|166200471|sp|A7H372|MNME_CAMJD RecName: Full=tRNA modification GTPase mnmE gi|152939790|gb|ABS44531.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. doylei 269.97] Length = 442 Score = 182 bits (462), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 149/477 (31%), Positives = 231/477 (48%), Gaps = 79/477 (16%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A++T +ISI+RLSG + +K K PR A+ F + I+D+ + Sbjct: 3 DTIAAIATAHGVGSISIVRLSGERALEFALRFSRKTKLTPRHATFTKLFNQNNEIIDEAI 62 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 +I F +P SFTGED EF HGG +V +LEEL + R A GEFS+RA NGK+ Sbjct: 63 MIYFKAPYSFTGEDIVEFQTHGGFSVSEVLLEELVSL-GARFALAGEFSKRACLNGKMTP 121 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 L+A ++ DLI S++ + ++ M G L L + L +F+E +D+++++ Sbjct: 122 LKALNIQDLILSKSALAAKIIARNMQGNLGELLEKIRTDLVKTLAFVETSIDYADDDLPS 181 Query: 186 NFSSK---------EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 + K ++L +I L SQ K G I G+KI I+G N GKSSL Sbjct: 182 DLLEKISTMCEENSKILKEIYTL--------SQSKKGLI--EGFKIAIIGKPNVGKSSLL 231 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 NAL + AIV+DI GTTRD + L +L++I DTAGIRE+ D +E+ G+ + + Sbjct: 232 NALLSYERAIVSDIAGTTRDTIEESFKLGTHLLRIIDTAGIRESKDTIEQIGVALSKKSL 291 Query: 297 ENADLILLL--------KE--------INSKKEISF-------------PKNIDFIFIGT 327 E+AD+IL + KE N+ K+I + +N +FI + Sbjct: 292 EDADIILAVFDASRVQDKEDEKIFELLANTDKKIFWILNKSDLENVFKNTRNKNFIKLSA 351 Query: 328 KSDLYSTYTEEYDHLISSFTGEGLE----ELINKIKSILSNKFKKLPFSIPSHKRHLYHL 383 + D+ + EE + ++SF EG+ +LIN K F+ Sbjct: 352 QKDI-ALLKEELQNYLNSFDSEGIMVSSLDLINACKISSEAIFR---------------- 394 Query: 384 SQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A ++ L++ A L LA L + T +++LD +F FC+GK Sbjct: 395 ---------AKELLEESSLELFAFELNLAINELARFTKDFQRDEILDEMFGNFCLGK 442 >gi|331086948|ref|ZP_08336024.1| tRNA modification GTPase mnmE [Lachnospiraceae bacterium 9_1_43BFAA] gi|330409609|gb|EGG89048.1| tRNA modification GTPase mnmE [Lachnospiraceae bacterium 9_1_43BFAA] Length = 400 Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 142/413 (34%), Positives = 221/413 (53%), Gaps = 41/413 (9%) Query: 56 LDGR-ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114 +DG +D+ L+++ P S+TGED+ E HGG+ V+ ILE + K R A PGEF+ Sbjct: 1 MDGEETIDEVLVLLMRGPHSYTGEDTVEIDCHGGVYVMKRILETVIKY-GARPAEPGEFT 59 Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR----- 169 +RAF NG++DL +AE++ D+I S+ E + +S L G ++K++ IR Sbjct: 60 KRAFLNGRLDLSQAEAVIDVIQSKNEY-------ALKSSVSQLKGSVLEKISEIRKEILY 112 Query: 170 --SFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227 +FIE LD E + + K + + L+ I + G II+ G + VI+G Sbjct: 113 HTAFIETALDDPEHISIDGYGEK-LQGTVEKLQGAIRRLLESADNGRIIKEGIQTVIVGK 171 Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKE 287 NAGKSSL N LA K+ AIVTDI GTTRD+L ++ + G + I DTAGIR+T+DIVEK Sbjct: 172 PNAGKSSLLNVLAGKERAIVTDIEGTTRDILEENIQINGISLNIIDTAGIRDTEDIVEKI 231 Query: 288 GIKRTFLEVENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH 341 G+ + ++ADLI+ + + N ++ + + + + KSDL + T+E Sbjct: 232 GVDKAKDYAKDADLIIYVVDASRALDENDEQILEMIREKQALILLNKSDLDTVITKE--- 288 Query: 342 LISSFTGEGLEEL-------INKIKSILSNKF--KKLPFS---IPSHKRHLYHLSQTVRY 389 L+ +T + + E+ I K++ L F K+ F+ ++ R L Sbjct: 289 LLQKYTEKPMIEISAKQEHGIEKVEHALKEMFFEGKVSFNDEVYITNIRQKTALQNAYDS 348 Query: 390 LE--MASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LE + S+ E + D + +L A +LG ITG E L++ IFSKFC+GK Sbjct: 349 LEKVIGSI-ENNMPEDFYSIDLMDAYEALGSITGETIGEDLVNEIFSKFCMGK 400 >gi|295101869|emb|CBK99414.1| tRNA modification GTPase TrmE [Faecalibacterium prausnitzii L2-6] Length = 455 Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 135/463 (29%), Positives = 234/463 (50%), Gaps = 31/463 (6%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M H TI A++T I+I+RLSGP ++V + + P + A + + + G Sbjct: 1 MQHS--TIAAIATAPGAGGIAIVRLSGPESYEVAAKVLRPANPAKKVADAKGYTAMFGAF 58 Query: 61 L------DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114 + D+G+ + F +P S+TGED E HGG AV ++E A E++ Sbjct: 59 VEGEEAFDEGVALFFRAPHSYTGEDVVELSCHGGSAVARRLVEACIAAGASPAAPG-EYT 117 Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174 RRAF NGK+ L +AE++ D+IS++ L+ ++G L+ D LT +++ + A Sbjct: 118 RRAFLNGKLSLTQAEAVMDIISADGRQGAALANASLNGALARKTAAQKDALTALQAHLAA 177 Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234 +DF EE DV S + + ++ ++ + I G ++R G I+G NAGKS+ Sbjct: 178 WVDFPEE-DVPELSQSHLCEVLGGVEQELDALIRSYDAGAVLREGVDCAIVGKPNAGKST 236 Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294 L N LA D AIVT + GTTRDV+ + L + + DTAG+R+T+D +E EGI+R++ Sbjct: 237 LLNLLAGFDRAIVTPVAGTTRDVVEQAVQLGDVRLNLFDTAGLRQTEDEIEAEGIRRSWK 296 Query: 295 EVENADLILLL---KEINSKKEISFPKNI---DFIFIGTKSDLYSTYTEEYDHLISSFTG 348 +++ A LIL + E +++++ + I + K D + + E LI+ + Sbjct: 297 KLDEAGLILAVFDGSERPTREDLELAQRCAGRPAIALVNKEDKPTRFDAE---LIAPYFA 353 Query: 349 ---------EGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNE 397 EG ++I + L +N+ S+ S +R L ++ + A Sbjct: 354 MVLPVCCQEEGARKVIAAAVARLLGTNQIDPHAASL-SGQRQLSAATRAREAVAGALDAA 412 Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + GLD ++ + A +L ++TG E +++ +F +FC+GK Sbjct: 413 QGLGLDAVSVCVDDALDALCELTGENASEAVINEVFERFCVGK 455 >gi|315453615|ref|YP_004073885.1| putative thiophene and furan oxidation protein [Helicobacter felis ATCC 49179] gi|315132667|emb|CBY83295.1| putative thiophene and furan oxidation protein [Helicobacter felis ATCC 49179] Length = 457 Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 141/473 (29%), Positives = 234/473 (49%), Gaps = 54/473 (11%) Query: 2 NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRIL 61 N TI A++T +AISII++SGP + + K PR+A+L + G +L Sbjct: 5 NPNPSTIAAIATSPGRAAISIIKISGPDSLAILRALTHKLDFSPRRATLVCIYDQQGDLL 64 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121 D+ L + F +P S+TGED E HGG+ V IL+ + LA GEFS+RAF NG Sbjct: 65 DQSLALYFKAPHSYTGEDVVEIQCHGGVVVAKLILQACLQ-AGASLAQGGEFSKRAFLNG 123 Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI-------EA 174 ++D + ++L L+ + + + + GEL D +TH R I EA Sbjct: 124 RMDFSQIQALGTLLEANSARMVKAMARQLKGELR-------DFVTHTRHDILALLASSEA 176 Query: 175 DLDFSEEE---DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRN----GYKIVILGH 227 +D++EE+ D+ ++ + L+N + ++ RN GY + ++G Sbjct: 177 LIDYAEEDLPLDLYPRMHAQLQAILAKLENTL----------DVSRNARIEGYCLGLVGK 226 Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKE 287 N GKSSL NAL KD A+V+ I GTTRD + L+L+G +K+ DTAGIR D +E+ Sbjct: 227 PNVGKSSLLNALLLKDRALVSSIAGTTRDTIEEYLELQGISLKLIDTAGIRTAQDAIEQL 286 Query: 288 GIKRTFLEVENADLILLLKEINSKKE----------ISFPKNIDFIFIGTKSDLYSTY-T 336 GI ++ ++ +D++L + ++++ E + KNI +F KSD + T Sbjct: 287 GIAKSLKSLQESDIVLAIFDLSTPLESQDRQVIALLLEHAKNIIVVF--NKSDCPAQLDT 344 Query: 337 EEYDHLIS-------SFTGEGLEELINKIKSILSNKFKKLPFS--IPSHKRHLYHLSQTV 387 +E +L+ + + + ++ L+ + P I + L T+ Sbjct: 345 QEVLNLLQGKFSSALTLSTTNPTHCLQSLRQALTPLLEDNPHDTLICASLAQQQALESTI 404 Query: 388 RYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +L A L++ + +L+ A SL IT +VE++LD +FS+FC+GK Sbjct: 405 SHLNHAQSLLATQELELFSYHLQDALNSLATITQPYNVEEMLDSMFSQFCLGK 457 >gi|325663376|ref|ZP_08151826.1| tRNA modification GTPase TrmE [Lachnospiraceae bacterium 4_1_37FAA] gi|325470830|gb|EGC74060.1| tRNA modification GTPase TrmE [Lachnospiraceae bacterium 4_1_37FAA] Length = 400 Score = 181 bits (460), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 141/413 (34%), Positives = 221/413 (53%), Gaps = 41/413 (9%) Query: 56 LDGR-ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114 +DG +D+ L+++ P S+TGED+ E HGG+ V+ ILE + K R A PGEF+ Sbjct: 1 MDGEETIDEVLVLLMRGPHSYTGEDTVEIDCHGGVYVMKRILETVIKY-GARPAEPGEFT 59 Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR----- 169 +RAF NG++DL +AE++ D+I S+ E + +S L G ++K++ IR Sbjct: 60 KRAFLNGRLDLSQAEAVIDVIQSKNEY-------ALKSSVSQLKGSVLEKISEIRKEILY 112 Query: 170 --SFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227 +FIE LD E + + K + + L+ I + G II+ G + VI+G Sbjct: 113 HTAFIETALDDPEHISIDGYGEK-LQGTVEKLQGAIRRLLESADNGRIIKEGIQTVIVGK 171 Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKE 287 NAGKSSL N LA K+ AIVTDI GTTRD+L ++ + G + I DTAGIR+T+DIVEK Sbjct: 172 PNAGKSSLLNVLAGKERAIVTDIEGTTRDILEENIQINGISLNIIDTAGIRDTEDIVEKI 231 Query: 288 GIKRTFLEVENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH 341 G+ + ++ADL++ + + N ++ + + + + KSDL + T+E Sbjct: 232 GVDKAKDYAKDADLVIYVVDASRALDENDEQILEMIREKQALILLNKSDLDTVITKE--- 288 Query: 342 LISSFTGEGLEEL-------INKIKSILSNKF--KKLPFS---IPSHKRHLYHLSQTVRY 389 L+ +T + + E+ I K++ L F K+ F+ ++ R L Sbjct: 289 LLQKYTEKPMIEISAKQEHGIEKVEHALKEMFFEGKVSFNDEVYITNIRQKTALQNAYDS 348 Query: 390 LE--MASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LE + S+ E + D + +L A +LG ITG E L++ IFSKFC+GK Sbjct: 349 LEKVIGSI-ENNMPEDFYSIDLMDAYEALGSITGETIGEDLVNEIFSKFCMGK 400 >gi|56807533|ref|ZP_00365460.1| COG0486: Predicted GTPase [Streptococcus pyogenes M49 591] Length = 291 Score = 181 bits (460), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 106/291 (36%), Positives = 175/291 (60%), Gaps = 7/291 (2%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD- 57 + E +TI A+ST AI I+RLSG + + + K K + AS +G +D Sbjct: 3 ITKEFDTITAISTPLGEGAIGIVRLSGTDALAIAQSVFKGKN-LEQVASHTINYGHIIDP 61 Query: 58 --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 G I+ + ++ V +P++FT E+ E + HGGIAV N IL+ L + R+A PGEF++ Sbjct: 62 KTGTIIYEVMVSVMLAPKTFTRENVVEINTHGGIAVTNEILQLLIRQ-GARMAEPGEFTK 120 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG++DL +AE++ D+I ++T+ ++++ + G LS L ++ + + +E + Sbjct: 121 RAFLNGRVDLTQAEAVMDIIRAKTDKAMTIAVKQLDGSLSQLINDTRQEILNTLAQVEVN 180 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +D+ E +DV+ ++ + ++ + + + K G+I+R G I+G N GKSSL Sbjct: 181 IDYPEYDDVEEMTTALLREKTQEFQSLLENLLRTAKRGKILREGLSTAIIGRPNVGKSSL 240 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEK 286 N L ++D AIVTDI GTTRDV+ ++++G K+ DTAGIRETDD+VE+ Sbjct: 241 LNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPSKLVDTAGIRETDDLVEQ 291 >gi|288802559|ref|ZP_06407998.1| tRNA modification GTPase TrmE [Prevotella melaninogenica D18] gi|288335087|gb|EFC73523.1| tRNA modification GTPase TrmE [Prevotella melaninogenica D18] Length = 462 Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 138/452 (30%), Positives = 233/452 (51%), Gaps = 43/452 (9%) Query: 19 AISIIRLSGPSCFQVCEFICK----KKKPFPRKASLRYFFGLD--GRILDKGLLIVFPSP 72 AI +IR+SG +V + + K + +L Y LD G +D L+ VF +P Sbjct: 24 AIGVIRVSGEKAIEVTDKVFHGVRGKHLTDAKGNTLHYGEILDKEGNTIDDVLVSVFRAP 83 Query: 73 ESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLA 132 S+TGE+S E HG ++N +++ L R A PGE+++RA+ NGK+DL +AE++A Sbjct: 84 HSYTGENSTEISCHGSAYILNQVVKALIN-AGCRQAQPGEYTQRAYLNGKMDLSQAEAVA 142 Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192 DLI++ ++++ + G SS ++L + S +E +LDFS+ E+++ E+ Sbjct: 143 DLIAASNRATHQVALSQLKGHFSSELSLLREQLLKMTSLLELELDFSDHEELEFADRTEL 202 Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252 + I + G+ ++ G + I+G +N GKS+L N L ++ AIV+DI G Sbjct: 203 KALAETIHQKIKLLTDSFETGKALKKGVPVAIVGKTNVGKSTLLNCLLHEEKAIVSDIHG 262 Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL------- 305 TTRDV+ +++G + DTAGIR TDD +EK GI+R + +++ A ++L + Sbjct: 263 TTRDVIEDTTEIKGVTFRFIDTAGIRHTDDQIEKLGIERAYQKMDEAAIVLWVIDEQPTA 322 Query: 306 KEINSKKEISFPKNIDFIF--IGTKS--------DLYSTYTEEYDHLISSFTGE---GLE 352 +E + ++ K++ IF I +K+ DL++ Y IS+ + LE Sbjct: 323 EECTEMQRLTQGKHLITIFNKIDSKAVEPKQVDNDLHTVY-------ISAKLKQNIKALE 375 Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV-RYLEMASLNEKDCGL--DIIAENL 409 E I + I + + H L H +++ R +E D GL D+++E+L Sbjct: 376 EAIYEAADIPEISENSVIITSARHYEALTHADESILRVIEAL-----DFGLSGDLVSEDL 430 Query: 410 RLASVSLGKITGC-VDVEQLLDIIFSKFCIGK 440 R+ L ITG + ++L IF FCIGK Sbjct: 431 RICLHQLADITGGQITPHEVLGNIFKHFCIGK 462 >gi|261415134|ref|YP_003248817.1| tRNA modification GTPase TrmE [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371590|gb|ACX74335.1| tRNA modification GTPase TrmE [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326526|gb|ADL25727.1| tRNA modification GTPase TrmE [Fibrobacter succinogenes subsp. succinogenes S85] Length = 460 Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 151/465 (32%), Positives = 239/465 (51%), Gaps = 34/465 (7%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK---KKPFPRKASL------RYFF 54 + +TI A T A SA++ IR+SG +V + + K PR+A L R Sbjct: 2 DSQTIVAPMTPAGVSAVAAIRVSGSKVREVVRLLFGESAIKNLKPREAKLATARDYRTMV 61 Query: 55 GLD---GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPG 111 G D ++D L I F P S+TGED E + HG +V +++ + + +RLA PG Sbjct: 62 GEDRATALVIDSLLYIFFEGPNSYTGEDVLELYPHGNPIIVRELIQVIKSVDGVRLAEPG 121 Query: 112 EFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSF 171 E++RRAF NG++DL++AES+AD+I S + + + + G LS + + I + Sbjct: 122 EYTRRAFLNGRMDLVQAESVADVIHSANRDELKNAHRLLGGALSKKVKTLTELVMDISAR 181 Query: 172 IEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAG 231 +E D+DFSEEE ++++ V I ++ + S + K + V+ G NAG Sbjct: 182 LELDVDFSEEEADPDYATWGV--KISAIRESVESILKSFKGKAAVSRLPLAVLYGAPNAG 239 Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI--RETD--DIVEKE 287 KSSL NAL +D +V++IPGTTRD + + L L+G +++ DTAGI + TD D + E Sbjct: 240 KSSLVNALLGEDRILVSNIPGTTRDFVEVRLFLDGGEIRLVDTAGIADKATDALDALSME 299 Query: 288 GIKRTFLEVENADLILLLKE--INSKKEISFPKN----IDFIFIGTKSDLYSTYTEEYDH 341 K E AD+ +L+ + ++ P+N D + I +KSDL E D Sbjct: 300 KSKEILAE---ADMKILVVDGSLDENCASCHPENGAAQPDIVVI-SKSDLLDERRETRDE 355 Query: 342 -----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA-SL 395 ISS TGEGL EL + + L K + + +R L + + ++ A +L Sbjct: 356 RGESIRISSKTGEGLAELKRAMNAALFKKMENSEDLWITSEREKTCLEEALAGIDRALNL 415 Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + ++++A ++L SL ITG + E +L IF+ FCIGK Sbjct: 416 IRTNPAVELLAFEMQLVRRSLQSITGEISSEDVLQQIFAGFCIGK 460 >gi|218885988|ref|YP_002435309.1| tRNA modification GTPase TrmE [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756942|gb|ACL07841.1| tRNA modification GTPase TrmE [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 478 Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 145/482 (30%), Positives = 232/482 (48%), Gaps = 49/482 (10%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI-- 60 ++ TI A++T + IIR+SGP + + P R A R + GR Sbjct: 2 RQEGTIAAIATPPGHGGVGIIRISGPDSHAILGRLFLPASP--RFAGFRPWTLHRGRACD 59 Query: 61 -----LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 LD L + P P +FTGED AE H HGG AV+ +LE RLA GEF+R Sbjct: 60 AMGAPLDDVLAVAMPGPRTFTGEDVAEIHCHGGPAVLAAVLEAACAC-GARLAGRGEFTR 118 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG++DL +AE++A++I++ + RL+ + G L + + +L +R+ + Sbjct: 119 RAFLNGRMDLTQAEAVAEMIAAPAQGGLRLAQARLQGLLGTRVAELRARLLDLRAQLCVA 178 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 +DF E+E V + + + + + + +S + G + G +V+ GH NAGKSSL Sbjct: 179 VDFPEDE-VDCLAPEAFVAECDAVAAGVRGLLSAHERGRCWQEGALVVLAGHVNAGKSSL 237 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 NAL + AIVTD+PGTTRD + + L G V++ DTAG+R+T DIVE+EG++ + Sbjct: 238 MNALLGRRRAIVTDMPGTTRDFIEEPVQLAGLPVRLVDTAGLRDTGDIVEQEGVRISRDL 297 Query: 296 VENADLILLL-----------KEI-----NSKKEISFPKNID--FIFIGTKSDLYSTYTE 337 V ADL+LL+ +E+ + ++ P + + K+DL + + Sbjct: 298 VAQADLVLLVVDAAAGLGHAERELLRHVRDQHAQVGRPGRPGGRVLVVLNKTDLAAEASA 357 Query: 338 EYDH----------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV 387 + +S+ G G++EL ++++ L + Sbjct: 358 AFRCPTEVEGCPCVAVSALRGLGVDELAAAARAMVLAGLGGDDAGGEPESGDLAPNLRQA 417 Query: 388 RYLEMASLNEKDC---------GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCI 438 + L A L+E D D+ + L A L +ITG ++L+ IFS FCI Sbjct: 418 QVLRRA-LDELDALVADVRAGVPYDLCSVRLDGACAVLSEITGETTPAEVLEHIFSSFCI 476 Query: 439 GK 440 GK Sbjct: 477 GK 478 >gi|302346393|ref|YP_003814691.1| tRNA modification GTPase TrmE [Prevotella melaninogenica ATCC 25845] gi|302151216|gb|ADK97477.1| tRNA modification GTPase TrmE [Prevotella melaninogenica ATCC 25845] Length = 462 Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 140/447 (31%), Positives = 230/447 (51%), Gaps = 33/447 (7%) Query: 19 AISIIRLSGPSCFQVCEFICK----KKKPFPRKASLRYFFGLD--GRILDKGLLIVFPSP 72 AI +IR+SG +V + + K + +L Y LD G+ +D L+ VF +P Sbjct: 24 AIGVIRVSGEKAIEVTDKVFHGVRGKHLTDAKGNTLHYGEILDKEGKTIDDVLVSVFRAP 83 Query: 73 ESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLA 132 S+TGE+S E HG ++N +++ L R A PGE+++RA+ NGK+DL +AE++A Sbjct: 84 HSYTGENSTEISCHGSAYILNQVVKALID-AGCRQAQPGEYTQRAYVNGKMDLSQAEAVA 142 Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192 DLI++ ++++ + G SS ++L + S +E +LDFS+ E+++ E+ Sbjct: 143 DLIAASNRATHQVALSQLKGHFSSELSLLREQLLKMTSLLELELDFSDHEELEFADRTEL 202 Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252 + I + G+ ++ G + I+G +N GKS+L N L ++ AIV+DI G Sbjct: 203 KALAETIHQKIKLLTDSFETGKALKKGVPVAIVGKTNVGKSTLLNCLLHEEKAIVSDIHG 262 Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL-LLKEINSK 311 TTRDV+ +++G + DTAGIR TDD +EK GI+R + +++ A ++L ++ E + Sbjct: 263 TTRDVIEDTTEIKGVTFRFIDTAGIRHTDDQIEKLGIERAYQKMDEAAIVLWVIDEQPTA 322 Query: 312 KEIS----FPKNIDFIFIGTKSDLYSTYTEEY---DHLISSFTG-------EGLEELINK 357 +E + K I I K D S TE D L + F + LEE I + Sbjct: 323 EECAEMQRLAKGKHLIAIFNKID--SKETERKLLNDELPTIFISAKLKQNIKALEEAIYE 380 Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTV-RYLEMASLNEKDCGL--DIIAENLRLASV 414 I + + H L H +++ R +E D GL D+++E+LR+ Sbjct: 381 AADIPEISENSVIITSARHYEALTHADESILRVIEAL-----DFGLSGDLVSEDLRICLH 435 Query: 415 SLGKITGC-VDVEQLLDIIFSKFCIGK 440 L ITG + ++L IF FCIGK Sbjct: 436 QLADITGGQITPHEVLGNIFKHFCIGK 462 >gi|225678567|gb|EEH16851.1| tRNA modification GTPase mss1 [Paracoccidioides brasiliensis Pb03] Length = 478 Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 141/478 (29%), Positives = 228/478 (47%), Gaps = 107/478 (22%) Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP-----------NLRLANPGEF 113 +++ FP+P++ TGED E HVHGG AVV +L + + ++R A PGEF Sbjct: 1 MVLYFPAPKTVTGEDLLELHVHGGPAVVKAVLNAIPRCTKVDFTGSNFPLSIRYAEPGEF 60 Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173 +RRAF N ++ L + E+L + +S+ETE QRRL++ G S L++ Y +W +L + R +E Sbjct: 61 TRRAFLNDRLSLPQIEALGNTLSAETEQQRRLAVRGTSDALATRYERWHQQLLYARGEME 120 Query: 174 ADLDFSEEEDVQNFSSKEVL---NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNA 230 A +DFSE++ + + VL ++I L I+ H+ GE++RNG K+ +LG NA Sbjct: 121 ALIDFSEDQHFDESAEEFVLSVTDEIRNLVRQINLHVENASKGELLRNGIKVALLGAPNA 180 Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD-------- 282 GKSSL N + ++ AIV+ GTTRD++ + +D+ G+ K D AG+R Sbjct: 181 GKSSLLNRIVGREAAIVSSEEGTTRDIVDVGVDIGGFFCKFGDMAGLRPDHSAQAGQMPP 240 Query: 283 --IVEKEGIKRTFLEVENADLILL---LKEINSKKE----------------ISFPKNI- 320 VEKEGI+R +D++++ ++E + E ++ KN+ Sbjct: 241 IGAVEKEGIRRAKARALESDVVIVVLSVEECDGGTEAKLVLEPEVVDAVRSCLTLGKNVI 300 Query: 321 -----------DFIFIGTKSDLYSTYTEE----YDH-------LISSFTGE--------- 349 I GT+ + + E + H LIS E Sbjct: 301 VAVNKADKCTTSMITAGTREEFFGRLAREIRSKFPHVAQDQIILISCREAENEQSETPDP 360 Query: 350 --------GLEELINKIKSIL-----SNKFKKLPF--SIPSHKRHLYHLSQTVRYL---- 390 GL + KI + ++F +L + S+ R +L + V++L Sbjct: 361 GNIQILLGGLVRIFKKISTPAELENEGDQFDQLYWQDSLGVTHRQSSNLQKCVQHLNDFL 420 Query: 391 ---EMASLNEKDC-----GLDII--AENLRLASVSLGKITG---CVDVEQLLDIIFSK 435 E N ++ +DI+ AE+LR A+ L KITG DVE +L ++F K Sbjct: 421 SQTEQTPENAENAEQIELNIDIVTAAEHLRFAADCLAKITGRGESGDVEDVLGVVFEK 478 >gi|167999799|ref|XP_001752604.1| predicted protein [Physcomitrella patens subsp. patens] gi|162696135|gb|EDQ82475.1| predicted protein [Physcomitrella patens subsp. patens] Length = 481 Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 142/489 (29%), Positives = 240/489 (49%), Gaps = 71/489 (14%) Query: 14 GALPSAISIIRLSGPSCFQVCEFICKKKKPF-------------PRKASLRYFFGLD--G 58 G A++I+RLSG S ++ + + K P+ ++Y +D G Sbjct: 2 GGQQGAVAIVRLSGNSAVKIVGRLFRTAKTMRNKENSHLNNEWNPKSHRVQYGNLIDASG 61 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 ++D+ L++ +P S+T ED E HGG V +L+ L RLA PGEF+ RAF Sbjct: 62 TLVDEVLVLPMLAPRSYTREDVVELQCHGGDVCVRRVLQ-LCLEAGARLAQPGEFTLRAF 120 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELS----SLYGQWIDKLTHIRSFIEA 174 NG++DL +AES+A L++++T + + ++ G+ G LS SL + ID L + EA Sbjct: 121 LNGRLDLAQAESVAQLVAAKTSVAAQSALAGIQGGLSAFVQSLRMECIDLLVEM----EA 176 Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234 LDF +E + N ++ I + + ++ G ++++G ++ I+G N GKSS Sbjct: 177 RLDFDDE--MPNLDINALITRIETMCQRLQQALATAGRGRLLQSGLQVAIVGRPNVGKSS 234 Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294 L NA ++ + AIVTDIPGTTRD++ + + G V + DTAGIR+T D+VEK G++R+ Sbjct: 235 LLNAWSQSERAIVTDIPGTTRDIVEARMVVGGIAVNLLDTAGIRDTADLVEKIGVERSEA 294 Query: 295 EVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEE- 353 + AD+I+++ I++ + I F I + E+ G G + Sbjct: 295 VAKAADVIVMV--ISASDGWTPADEIIFQRIWGTDGILRQRKEQTGGECEDQPGSGSVQT 352 Query: 354 ----LINKIKSI----------LSNKF--------------KKLPFSI----------PS 375 ++NK+ + N F ++L F+I Sbjct: 353 PSLLVVNKVDRAAAGSVILPQEVQNAFFKRVATCATQGVGLQELDFAILDLVGLGHVSSE 412 Query: 376 HKRHLYHLSQTVRYLE----MASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDI 431 ++ Q VR E + + D LD+ +L+ A+++LG+I+G E++L Sbjct: 413 GQQWARQAEQLVRAQEALRRVVESVQLDIPLDMWTIDLKEAAIALGEISGDDVSEEVLTN 472 Query: 432 IFSKFCIGK 440 IF++FCIGK Sbjct: 473 IFNRFCIGK 481 >gi|315638574|ref|ZP_07893748.1| tRNA modification GTPase TrmE [Campylobacter upsaliensis JV21] gi|315481198|gb|EFU71828.1| tRNA modification GTPase TrmE [Campylobacter upsaliensis JV21] Length = 442 Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 154/473 (32%), Positives = 237/473 (50%), Gaps = 71/473 (15%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A++T +ISIIR+SG ++ + K + PR A F + +D+ + Sbjct: 3 DTIAALATAYGTGSISIIRVSGSRALELGLKLSHKDELSPRYAYFVKLFNDENVFIDEAI 62 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 +I F +P SFTGED EF +HGG +V +L+EL K ++RLA GEFS+RA NGK+ Sbjct: 63 MIYFKAPFSFTGEDVVEFQIHGGFSVSEILLDELLK-NDVRLAKAGEFSKRACLNGKMSA 121 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 L+A ++ DLIS+++ ++ M G L++L + L +F+E +D+++++ Sbjct: 122 LKALNIQDLISAKSAKSAKIIARNMQGTLANLIEKIRLDLIKSLAFVETSIDYADDDLPS 181 Query: 186 NFSSK---------EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 + + +L +I L SQ K + + G+KI I+G NAGKSSL Sbjct: 182 DLMEQIRMMCEENARILEEIYTL--------SQSK--KALLEGFKIAIIGKPNAGKSSLL 231 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 NAL + AIV+ + GTTRD + L + +LVKI DTAGIRE+++ +EK GI+ + + Sbjct: 232 NALLAYERAIVSPLAGTTRDFIEESLKIGTHLVKIMDTAGIRESEEELEKIGIELSKKSL 291 Query: 297 ENADLILLL-----------KEI-----NSKKEISFPKN-------------IDFIFIGT 327 AD+IL L KEI NS+K++ + N ID I I Sbjct: 292 NEADIILALFDSSREFDEEDKEILNLLKNSEKKVFYLLNKCDLKPQFENLNEIDLIKISA 351 Query: 328 KSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV 387 K D+ + + ++S EG L++ + I N KK +I K L Sbjct: 352 KEDIM-PLKKALESYLNSLDSEGF--LVSSLDFI--NACKKASEAIQRAKTLLDE----- 401 Query: 388 RYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 R LE+ A L +A L K T E++LD +FS FC+GK Sbjct: 402 RVLEL------------FAFELNVAIEELAKFTKDFKREEILDEMFSNFCLGK 442 >gi|218781965|ref|YP_002433283.1| tRNA modification GTPase TrmE [Desulfatibacillum alkenivorans AK-01] gi|218763349|gb|ACL05815.1| tRNA modification GTPase TrmE [Desulfatibacillum alkenivorans AK-01] Length = 463 Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 144/469 (30%), Positives = 235/469 (50%), Gaps = 48/469 (10%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP----FPRKASLRYFFGLDGRIL 61 +TI A++T I +IR+SGP + + I + +P +A + + G+I+ Sbjct: 9 QTIAAIATPPGVGGIGVIRISGPLSSSILKSIFQPAHSSFDIWPPQA----YKLIRGKIV 64 Query: 62 DKG--------LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEF 113 D L + P P ++TGED AE HGG V++ +LE + RLA PGEF Sbjct: 65 DPKTTAVKDEVLAVFMPGPGTYTGEDVAEIQGHGGPVVLSAVLETVLSQ-GARLAEPGEF 123 Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173 +RRAF NG++DL +AE++ DLI + T + + + G L S +D + R+ IE Sbjct: 124 TRRAFLNGRMDLSQAEAVVDLIHARTSRAAKTAAAHVGGALKSRVEGILDSIMECRAQIE 183 Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQ----GKLGEIIRNGYKIVILGHSN 229 A LDFS+ D + +K +L L + S + + +LG+ G + I+G N Sbjct: 184 AALDFSD--DTGDGETKWILAK---LDQGVISPLKELAEAAELGKAHMEGLRAAIVGRPN 238 Query: 230 AGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGI 289 GKSSL NALA ++ +IVT+ PG TRDV+ + + G +SDTAG+R + D VE G+ Sbjct: 239 VGKSSLMNALAGQERSIVTETPGATRDVIREPVLIRGLHFTLSDTAGLRTSSDAVEMIGV 298 Query: 290 KRTFLEVENADLILLLKEINSKKEISFPKNIDF-----------IFIGTKSDLYSTY--- 335 +R + +DL++L+ E S ++S P++ + + + K DL+ + Sbjct: 299 QRAKDAMGESDLVMLVVEAGS--DLS-PEDQELLHQAEHSCNRVLMVYNKMDLHPGFIPS 355 Query: 336 -TEEYDHL-ISSFTGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391 +Y + +S+ TG+GL+ L +++ L + P IP + R L + Sbjct: 356 PVRDYAPVAVSAKTGQGLDGLRRAMENSLRQGRELDAAPGIIP-NLRQKGALESALESAT 414 Query: 392 MASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A + ++ A ++ A SL ++ G +LD IFS FCIGK Sbjct: 415 EARSRILEEAWELAAFDMEEAQKSLEQVLGLGVSPDILDRIFSDFCIGK 463 >gi|12044858|ref|NP_072668.1| tRNA modification GTPase TrmE [Mycoplasma genitalium G37] gi|1351237|sp|P47254|MNME_MYCGE RecName: Full=tRNA modification GTPase mnmE gi|1045676|gb|AAC71224.1| tRNA modification GTPase TrmE [Mycoplasma genitalium G37] gi|166078782|gb|ABY79400.1| tRNA modification GTPase TrmE [synthetic Mycoplasma genitalium JCVI-1.0] Length = 442 Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 138/445 (31%), Positives = 232/445 (52%), Gaps = 19/445 (4%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA---SLRYFFGLDGRILDK 63 IFA++T SA+ IIR SGP +++ I KK RK + + + +D Sbjct: 6 NIFALATAPFNSALHIIRFSGPDVYEILNKITNKK--ITRKGMQIQRTWIVDENNKRIDD 63 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 LL F SP S+TGED E HG + +VN I L K + A PGEF++R+F NGK+ Sbjct: 64 VLLFKFVSPNSYTGEDLIEISCHGNMLIVNEICALLLKKGGV-YAKPGEFTQRSFLNGKM 122 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 L +A ++ LI S + + + + ++GE+ Q ++ + +E ++D+ E D Sbjct: 123 SLQQASAVNKLILSPNLLVKDIVLNNLAGEMDQQLEQIAQQVNQLVMQMEVNIDYPEYLD 182 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 Q + N + + + I K + + + +KI I+G +N GKSSL NAL +D Sbjct: 183 EQ-VELSTLNNKVKLIIEKLKRIIENSKQLKKLHDPFKIAIIGETNVGKSSLLNALLNQD 241 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303 AIV++I G+TRDV+ D +L GYL+KI DTAGIR+ +EK GIK++F ++ A+L++ Sbjct: 242 KAIVSNIKGSTRDVVEGDFNLNGYLIKILDTAGIRKHKSGLEKAGIKKSFESIKQANLVI 301 Query: 304 -LLKEINSKKEISF-----PKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINK 357 LL + KK++ DF K DL T ++++ IS+ + ++EL++ Sbjct: 302 YLLDATHPKKDLELISFFKKNKKDFFVFYNKKDL---ITNKFENSISA-KQKDIKELVDL 357 Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL--EMASLNEKDCGLDIIAENLRLASVS 415 + ++ +KK+ I + L + ++ + +K D++ +LR A Sbjct: 358 LTKYINEFYKKIDQKIYLIENWQQILIEKIKEQLEQFLKQQKKYLFFDVLVTHLREAQQD 417 Query: 416 LGKITGCVDVEQLLDIIFSKFCIGK 440 + K+ G L++ IF+ FC+GK Sbjct: 418 ILKLLGKDVGFDLVNEIFNNFCLGK 442 >gi|283853590|ref|ZP_06370827.1| tRNA modification GTPase TrmE [Desulfovibrio sp. FW1012B] gi|283571015|gb|EFC19038.1| tRNA modification GTPase TrmE [Desulfovibrio sp. FW1012B] Length = 466 Score = 179 bits (455), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 142/462 (30%), Positives = 228/462 (49%), Gaps = 32/462 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFF-------GLDG 58 +TI AV+T + I+R+SGP V + P P + LR + G Sbjct: 10 DTIAAVATPPGRGGVGIVRVSGPQSRLVASRLFLS--PRPGFSGLRPYILHHGSLRAPSG 67 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 RI+D+ + P P S+TGED+ EF HG AV+ +L R A PGEF+RRA+ Sbjct: 68 RIIDEAMAAYMPGPGSYTGEDTVEFFCHGSPAVLRAVLAAAFAY-GARPAGPGEFTRRAY 126 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NG++DL +AE++A+L+++ + Q +++ +SG + + L +R+ + +DF Sbjct: 127 VNGRLDLSQAEAVAELVAARGDAQADMALVRLSGGMGQAARELGLALDDLRASVCLAVDF 186 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 ++E V+ K + + + + + ++ + R G ++ + G NAGKSSLFNA Sbjct: 187 PDDE-VECLPKKSFGAGVSAVIDRVETLLAAHRRARPFREGARVALFGRVNAGKSSLFNA 245 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L D A+V D+PGTTRD L LDL+G V ++DTAG+R+T D VE+ G R Sbjct: 246 LLGTDRALVADVPGTTRDYLEEGLDLDGLPVNLTDTAGLRQTLDAVEQAGKARGLALAGT 305 Query: 299 ADLILLLKEIN-------SKKEISFPKNIDFIF-IGTKSDLYSTYTEEYDHL-------- 342 A L L + + + +E+ D + + K+DL + D L Sbjct: 306 AALGLYVVDGSVPFAPDAEAEELVAALGPDRVLGVVAKADLPAATPAPGDILAIRGLESV 365 Query: 343 -ISSFTGEGLEELINKIKSILSNKFKKLP---FSIPSHKRHLYHLSQTVRYLEMASLNEK 398 +S+ TG GL L+ I++ L+ LP PS + ++ L + Sbjct: 366 AVSARTGHGLAGLLTAIRTRLTRD-AGLPEPETPAPSDREAACLVATRDELLALLGDIRD 424 Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D D++ L AS++L ITG + +L+ +FSKFCIGK Sbjct: 425 DLPYDLLGVRLEAASLALADITGETSADDVLNAVFSKFCIGK 466 >gi|313892276|ref|ZP_07825869.1| tRNA modification GTPase TrmE [Dialister microaerophilus UPII 345-E] gi|313119414|gb|EFR42613.1| tRNA modification GTPase TrmE [Dialister microaerophilus UPII 345-E] Length = 459 Score = 179 bits (455), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 148/469 (31%), Positives = 247/469 (52%), Gaps = 42/469 (8%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL---D 57 +E+ TI A++TG+ I IIR+SG S + E F KK F + +FG D Sbjct: 2 YEETTIAAIATGSGEGGIGIIRISGISACDIAERVFYTKKLNTFKDAIPYKMYFGYVKRD 61 Query: 58 GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 + +D+GL + +P S+TGED E +HG + LE L +A GEF++RA Sbjct: 62 EKKIDEGLAVYMKAPHSYTGEDVVEIQIHGSQEALRQTLE-LVLEKGATIAERGEFTKRA 120 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NG++DL +AE++ D+I ++ + + +SG LS + +K+ + + +E +D Sbjct: 121 FLNGRLDLTQAEAVMDIIEAKNAVALTQAESHLSGALSKFVHENREKMKDLITKLEVTID 180 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 + +E D+++ + E+ ++ ++ + + + K G II++G + I+G NAGKSSL N Sbjct: 181 YPDE-DLKDLTRHEMETELSEIEKTLYALLETSKKGRIIKDGIRTAIVGKPNAGKSSLLN 239 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 L +++ AIVTDIPGTTRD + + L G + + DTAGIR+T++ VEK GI+R +E Sbjct: 240 TLLQEERAIVTDIPGTTRDTIEESISLSGIPLILMDTAGIRKTENKVEKIGIERARESME 299 Query: 298 NADLIL---------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL 342 ADL+L LL+EI+ +K + D TK + S Y ++ L Sbjct: 300 KADLVLMVIDSSKELEESDKKLLEEISKRKAVVLLNKSDLEKKTTKETV-SKYAKDLPVL 358 Query: 343 -ISSFTGEGLEELINKIKSILSNKFKKLPFS-----IPSHKRHLYHLSQT----VRYLEM 392 IS+ G+ NK++ +L + K ++ RH+ + + +R E Sbjct: 359 EISAKNKTGM----NKLEKVLEDYVKTGDIEDGRALFLTNLRHIDLVKKAYESVIRAKES 414 Query: 393 ASLN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L DC + + E+ + LG+ITG ++L++ IFS+FC+GK Sbjct: 415 LQLYMPADCIVVDLTESWNI----LGEITGDTVDDELINSIFSRFCVGK 459 >gi|329121701|ref|ZP_08250318.1| tRNA modification GTPase TrmE [Dialister micraerophilus DSM 19965] gi|327468171|gb|EGF13657.1| tRNA modification GTPase TrmE [Dialister micraerophilus DSM 19965] Length = 459 Score = 179 bits (454), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 149/469 (31%), Positives = 246/469 (52%), Gaps = 42/469 (8%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL---D 57 +E+ TI A++TG+ I IIR+SG S + E F KK F + +FG D Sbjct: 2 YEETTIAAIATGSGEGGIGIIRISGISACDIAERVFYTKKLNTFKDAIPYKMYFGYVKRD 61 Query: 58 GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 +D+GL + +P S+TGED E +HG + LE L +A GEF++RA Sbjct: 62 ETKIDEGLAVYMKAPHSYTGEDVVEIQIHGSQEALRQTLE-LVLEKGATIAERGEFTKRA 120 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NG++DL +AE++ D+I ++ + + +SG LS + +K+ + + +E +D Sbjct: 121 FLNGRLDLTQAEAVMDIIEAKNAVALTQAESHLSGALSKFVHENREKMKDLITKLEVTID 180 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 + +E D+++ + E+ ++ ++ + S + K G II++G + I+G NAGKSSL N Sbjct: 181 YPDE-DLKDLTRHEMETELSEIEKTLYSLLETSKKGRIIKDGIRTAIVGKPNAGKSSLLN 239 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 L +++ AIVTDIPGTTRD + + L G + + DTAGIR+T++ VEK GI+R +E Sbjct: 240 TLLQEERAIVTDIPGTTRDTIEESISLSGIPLILMDTAGIRKTENKVEKIGIERARESME 299 Query: 298 NADLIL---------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL 342 ADL+L LL+EI+ +K + D TK + S Y ++ L Sbjct: 300 KADLVLMVIDSSKELEESDKKLLEEISKRKAVVLLNKSDLEKKTTKETV-SKYAKDLPVL 358 Query: 343 -ISSFTGEGLEELINKIKSILSNKFKKLPFS-----IPSHKRHLYHLSQT----VRYLEM 392 IS+ G+ NK++ +L + K ++ RH+ + + +R E Sbjct: 359 EISAKNKTGM----NKLEKVLEDYVKTGDIEDGRALFLTNLRHIDLVKKAYESVIRAKES 414 Query: 393 ASLN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L DC + + E+ + LG+ITG ++L++ IFS+FC+GK Sbjct: 415 LQLYMPADCIVVDLTESWNI----LGEITGDTVDDELINSIFSRFCVGK 459 >gi|57242376|ref|ZP_00370315.1| tRNA modification GTPase TrmE [Campylobacter upsaliensis RM3195] gi|57017056|gb|EAL53838.1| tRNA modification GTPase TrmE [Campylobacter upsaliensis RM3195] Length = 442 Score = 179 bits (454), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 153/473 (32%), Positives = 236/473 (49%), Gaps = 71/473 (15%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A++T +ISIIR+SG ++ + K + PR A F + +D+ + Sbjct: 3 DTIAALATAYGTGSISIIRVSGSRALELGLKLSHKDELSPRYAYFVKLFNDENVFIDEAI 62 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 +I F +P SFTGED EF +HGG +V +L+EL K ++RLA GEFS+RA NGK+ Sbjct: 63 MIYFKAPFSFTGEDVVEFQIHGGFSVSEILLDELLK-NDVRLAKAGEFSKRACLNGKMSA 121 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 L+A ++ DLI++++ ++ M G L+ L + L +F+E +D+++++ Sbjct: 122 LKALNIQDLINAKSAKSAKIIARNMQGTLADLIEKIRLDLIKSLAFVETSIDYADDDLPS 181 Query: 186 NFSSK---------EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 + + +L +I L SQ K + + G+KI I+G NAGKSSL Sbjct: 182 DLMEQIRMMCEENARILEEIYTL--------SQSK--KALLEGFKIAIIGKPNAGKSSLL 231 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 NAL + AIV+ + GTTRD + L + +LVKI DTAGIRE+++ +EK GI+ + + Sbjct: 232 NALLAYERAIVSPLAGTTRDFIEESLKIGTHLVKIMDTAGIRESEEELEKIGIELSKKSL 291 Query: 297 ENADLILLL-----------KEI-----NSKKEISFPKN-------------IDFIFIGT 327 AD+IL L KEI NSKK++ + N ID I I Sbjct: 292 NEADIILALFDSSRKFDDEDKEILNLLRNSKKKVFYLLNKCDLKPQFENLNEIDLIKISA 351 Query: 328 KSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV 387 K D+ + + + ++S EG L++ + I N KK +I K L Sbjct: 352 KEDI-APLKKALESYLNSLDSEGF--LVSSLDFI--NACKKASEAIQRAKTLLDE----- 401 Query: 388 RYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 R LE+ A +A L K T E++LD +FS FC+GK Sbjct: 402 RVLEL------------FAFEFNVAIEELAKFTKDFKREEILDEMFSNFCLGK 442 >gi|291243985|ref|XP_002741880.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii] Length = 245 Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 87/183 (47%), Positives = 124/183 (67%), Gaps = 2/183 (1%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVC-EFICKKKKPFPRKASLRYFF-GLDGRILDK 63 +TI+A+++G I++IRLSGPS V E +K+ P PR+AS+R + G +D+ Sbjct: 56 DTIYALASGHGKCGIAVIRLSGPSASLVLKELTGRKQLPIPRQASIRRLHDSVSGEHVDR 115 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 LL+ FP P SFTGED EFH+HGGIAV++ + L +P +R A PGEF++RAF NGK+ Sbjct: 116 ALLLWFPGPNSFTGEDVCEFHIHGGIAVISALYHALDNIPGVRPAEPGEFTKRAFLNGKL 175 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL E E L DLI +ETE QR+ ++ M GELS LY W D+L + IEA +DFSE+++ Sbjct: 176 DLTEVEGLGDLIHAETEAQRKQALRQMEGELSKLYKDWKDRLVKCAANIEAYIDFSEDDN 235 Query: 184 VQN 186 +++ Sbjct: 236 IED 238 >gi|268610510|ref|ZP_06144237.1| putative tRNA modification GTPase [Ruminococcus flavefaciens FD-1] Length = 453 Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 137/463 (29%), Positives = 234/463 (50%), Gaps = 41/463 (8%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICK----KKKPFPRKASLRYFFGLDG-RIL 61 TI AVST +++IR+SG ++ E + + +K + + Y DG + Sbjct: 3 TIAAVSTPNAVGGLAVIRISGERAIEIAEAVFRPAGGRKVSDMKGYTCAYGDAYDGDEHI 62 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121 D +L VF +P S+TGED+AE HGG+ V IL + A GEF++RAF NG Sbjct: 63 DDCILTVFRAPHSYTGEDTAEISCHGGLYVSKKILRAILAH-GAENAEAGEFTKRAFLNG 121 Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181 K+DL +AE++ D+IS+ E + +++ G + DKL I + A D+ EE Sbjct: 122 KLDLTQAEAVMDIISARGEKELKMAESLREGAAYRTARKCSDKLMKILGDLAAWADYPEE 181 Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 D+ ++ ++ +++D+S+ + G +IR G I+G N GKS+LFN L+ Sbjct: 182 -DIPEVEPDTLMKELREVRSDLSTLVENYDSGRLIREGISTAIIGRPNVGKSTLFNCLSG 240 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 + +IVTDI GTTRD++ + L +++SDTAGI +TDD++E G+ ++ A+L Sbjct: 241 CERSIVTDIAGTTRDIVEESVRLGDITLRLSDTAGIHDTDDVIEGIGVDMAEKMIDKAEL 300 Query: 302 IL---------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL--IS 344 +L L+ +IN I+ D + K D+ + T+ + H+ IS Sbjct: 301 VLAVFDGSCPLTEDDLYLVNKINKSNTIAVINKSD---VEQKLDI-NELTKYFIHIVYIS 356 Query: 345 SFTGEGLEELINKIKSILS---NKFKKLPFSIPSHKR----HLYHLSQTVRYLEMASLNE 397 + G+ +L NK++ I S F+ + + K+ L + + + LE+ + Sbjct: 357 AKENSGVIDLKNKVEEIFSINEQTFENVSAANERQKKCIDSALRSIDEAISALEIGEM-- 414 Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LD + + A S+ +TG + ++D +FS+FC+GK Sbjct: 415 ----LDAVNVIIDEAEQSILSLTGEKITDAVVDEVFSRFCVGK 453 >gi|251772739|gb|EES53301.1| tRNA modification GTPase TrmE [Leptospirillum ferrodiazotrophum] Length = 441 Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 133/446 (29%), Positives = 222/446 (49%), Gaps = 17/446 (3%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQ-VCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64 ++I A T +P + I+RLSG + +Q + P PRKA+L G+ +D Sbjct: 2 DSIVAPVTALVPQPVGILRLSGLNLWQQIQPLFPGLPCPAPRKATL-LTLKRQGQAIDSV 60 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 L++ FP P SFTGED E HG + IL + + +R A PGEFS RA++NGKI Sbjct: 61 LVLFFPGPHSFTGEDVVEIQAHGNPQNIRSILHSIEEC-GIRQAKPGEFSLRAYKNGKIS 119 Query: 125 LLEAESLADLISSETEMQRRLSMEGMS----GELSSLYGQWIDKLTHIRSFIEADLDFSE 180 LL+AESL +I++ T + S L+++ ++D L +F LD+ E Sbjct: 120 LLKAESLHRMITAPTYGDFLSAHSSFSRPENHPLATIKEAFLDLLASFYAF----LDYPE 175 Query: 181 E--EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 E + ++S + IL L++ +S + + + + +++ G N+GKSSLFN Sbjct: 176 ELTDSEHSYSHSLLFPKILTLQHLSRHQLSLFRKNRRVFSSFSVLLAGPPNSGKSSLFNR 235 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVE 297 L + D AIV+ PGTTRD+L L L + + D+AG R ++D++E GI + + Sbjct: 236 LLQSDRAIVSPYPGTTRDLLEGRLSLPFGDLLLLDSAGFRSSSNDLIEGMGISKARKTIA 295 Query: 298 NADLILLLKEINSKKEISFPKNIDFIFIGTKSDL-YSTYTEEYDHLISSFTGEGLEELIN 356 + D +L + + + F + I K DL D ++S+ T +GL +L++ Sbjct: 296 HVDRLLWVTSPETLAPLPFSTRTPYFTIWNKVDLSPPPPILPPDFVVSARTRKGLRQLLD 355 Query: 357 KIKSILSNKFKKLPFSIP--SHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASV 414 + S+ + + S P +R LS ++ + A + + D+ +L A Sbjct: 356 ALVSLAEDFYSHHNNSTPLLDSERQAQALSSFLKAITRAEDSLRSNAFDLALTSLEEARN 415 Query: 415 SLGKITGCVDVEQLLDIIFSKFCIGK 440 L TG + E++ D +FS+FC+GK Sbjct: 416 LLEDGTGMISTEEIYDRVFSRFCLGK 441 >gi|257437744|ref|ZP_05613499.1| tRNA modification GTPase TrmE [Faecalibacterium prausnitzii A2-165] gi|257199759|gb|EEU98043.1| tRNA modification GTPase TrmE [Faecalibacterium prausnitzii A2-165] Length = 456 Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 107/308 (34%), Positives = 169/308 (54%), Gaps = 8/308 (2%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRIL-- 61 E TI A++T I+++RLSGP + V + P R + + L G + Sbjct: 2 EHSTIAAIATAPGAGGIAVVRLSGPESYAVAAKVFCPANPAKRVEEAKGYTALFGHFMEG 61 Query: 62 ----DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 D+G+ + F +P S+TGED E HGG AV ++E A E++RRA Sbjct: 62 EEAFDEGVALFFRAPHSYTGEDVVELSCHGGSAVARRLVESCIAAGAAPAAPG-EYTRRA 120 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NGK+ L +AE++ DLIS++ L+ ++G L+ G D LT +++ + A +D Sbjct: 121 FLNGKLGLTQAEAVMDLISADGRQGAALANASLNGALAKKIGAEKDALTALQAHLTAWVD 180 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 F EE DV ++++ + +K ++ + I G ++R G I+G NAGKS+L N Sbjct: 181 FPEE-DVPALEDAQLVSTLTAVKGELDTLIRNYDAGAVLREGVDCAIVGRPNAGKSTLLN 239 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 LA D AIVT + GTTRDV+ + L + + DTAG+RET+D +E EGI+R++ +++ Sbjct: 240 LLAGFDRAIVTPVAGTTRDVVEQAVRLGDIRLNLFDTAGLRETEDAIEAEGIRRSWKKLD 299 Query: 298 NADLILLL 305 A LIL + Sbjct: 300 EAGLILAV 307 >gi|302909904|ref|XP_003050176.1| predicted protein [Nectria haematococca mpVI 77-13-4] gi|256731113|gb|EEU44463.1| predicted protein [Nectria haematococca mpVI 77-13-4] Length = 439 Score = 177 bits (449), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 133/434 (30%), Positives = 206/434 (47%), Gaps = 79/434 (18%) Query: 82 EFHVHGGIAVVNGILEELAK---MPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSE 138 E HVHGG A V +L + + +R A PGEF++RAF N ++DL + ESL+D +++E Sbjct: 10 ELHVHGGAATVKAVLSAIPRCSTAQRIRYAEPGEFTKRAFFNDRLDLAQIESLSDTLAAE 69 Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKE------V 192 TE QRR ++ G SG L Y W ++L R IEA +DFSE+ Q+F + V Sbjct: 70 TEQQRRAAVRGNSGALGRQYEAWREQLLLARGEIEALIDFSED---QHFDESQADLLHNV 126 Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252 + + + I H + E++RNG +I +LG N GKSSL N + ++ +IV+ G Sbjct: 127 TTQVARMLHSIELHEQGSQRSELLRNGIRIALLGPPNVGKSSLMNLIVGREASIVSGEAG 186 Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDD------------IVEKEGIKRTFLEVENAD 300 TTRD++ LD+ GYL +DTAG R VE+EGI+R + ++D Sbjct: 187 TTRDIIEASLDIRGYLCSFADTAGFRSNGSGTINGDGGGAIGAVEEEGIRRAKQKAMDSD 246 Query: 301 LILLLKEINSKKEISF-----------PKNIDFIFIGTKSDL-----YSTYTEEYDHLIS 344 L+++L + SF D + + K D + EE+ +S Sbjct: 247 LVIVLASVEDGPGGSFLQYDEETLDLAAGAEDCLIVVNKRDAVDAGQFEKLVEEFRRTVS 306 Query: 345 ------------SFTGEGLEEL---------INKIKSILSNKFKKLPFSIPSHKRHLYHL 383 S + + + L + + L F+K+ S+P + L + Sbjct: 307 EKAPKLAAAELVSISCKEAQTLGSESKDPGGVQAVMDQLVGSFEKMT-SMPVDLQDLLGV 365 Query: 384 SQTVRYLE----------MASLNEKDCGLD----IIAENLRLASVSLGKITG---CVDVE 426 ++ R L MA ++ G+D + AE LR A+ L +ITG DVE Sbjct: 366 TERQRQLLVKCRGHLQDFMAEATPEEEGMDADTVLAAEYLRYAADCLARITGRGEFGDVE 425 Query: 427 QLLDIIFSKFCIGK 440 +L +IF KFC+GK Sbjct: 426 DVLGVIFEKFCVGK 439 >gi|317133704|ref|YP_004093018.1| tRNA modification GTPase TrmE [Ethanoligenens harbinense YUAN-3] gi|315471683|gb|ADU28287.1| tRNA modification GTPase TrmE [Ethanoligenens harbinense YUAN-3] Length = 455 Score = 177 bits (449), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 136/458 (29%), Positives = 230/458 (50%), Gaps = 29/458 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFG----LDGR 59 E I A++T I +IRLSG F V + F K K A FG +DG Sbjct: 4 EPIAAIATPHGTGGIGVIRLSGDGAFTVAQRVFHAKSGKALADMAGYTAAFGQVCDVDGP 63 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 + D+ +++VF +P+S+TGED E HGG ++ L L RLA PGEF+RRAF Sbjct: 64 V-DEAVVLVFRAPKSYTGEDVVEISCHGGETILRRTLAALLAT-GARLAGPGEFTRRAFL 121 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 +G+IDL EAE++ LI +++ R ++ G L Q + L + + + A D+ Sbjct: 122 HGRIDLTEAEAVMQLIGAQSADAVRAAIAQHEGALYREIRQIKEILYQLSAELAAFFDYP 181 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 ++ D+ + + VL + ++ + Q + G ++R+G + I+G N GKS+L N L Sbjct: 182 DD-DIPALTRESVLPRLAEVQEKLEKLCVQYETGRVLRDGVTVAIVGKPNVGKSTLMNRL 240 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 ++ +IVT+I GTTRDV+ G + + DTAG+RETDD VE+ G+ R ++E A Sbjct: 241 LGEERSIVTEIAGTTRDVVEESAQFAGMTLHLFDTAGLRETDDPVERIGVARAKSKIEQA 300 Query: 300 DLILLL----KEINSKKE--ISFPKNIDFIFIGTKSDL---------YSTYTEEYDHLIS 344 L+ +L + ++ + E S + I I K+DL S + + IS Sbjct: 301 MLVFVLFDGSRPLDGEDESIFSMLQGKRVIAILNKADLPQRCDMARIRSVFPDMVS--IS 358 Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG--L 402 + G++ L +++ + + ++ R L + + M S G L Sbjct: 359 AAEAHGMDALETRLRDRFRLEAIDPRAGMLANARQL-DCALRAKTAVMESRQGLIAGFTL 417 Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D+++ L+ A +L ++TG E +++ +F++FC+GK Sbjct: 418 DVLSVGLQTAEDALAELTGEQASEAVIEKVFAQFCVGK 455 >gi|229826871|ref|ZP_04452940.1| hypothetical protein GCWU000182_02255 [Abiotrophia defectiva ATCC 49176] gi|229788489|gb|EEP24603.1| hypothetical protein GCWU000182_02255 [Abiotrophia defectiva ATCC 49176] Length = 455 Score = 177 bits (449), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 147/458 (32%), Positives = 238/458 (51%), Gaps = 28/458 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA---SLRY--FFGLDGRI 60 +TI A+ST S ISIIR+SG F + + K K +++Y + G I Sbjct: 3 DTITAISTAVGNSGISIIRISGDEAFDIAGKLMKLSSTDVEKIKTHTIKYGHIYNEAG-I 61 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+ L+ P+++T ED E + HGG + +LE K R A PGEF++RAF + Sbjct: 62 VDEVLVSFMKGPKTYTREDVVEINCHGGAFITKKVLETAIK-AGARPAEPGEFTKRAFLS 120 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G+IDL +AE++ D+I ++++ + + ++G + D + ++IEA LD E Sbjct: 121 GRIDLTQAEAVMDIIRADSDYAIKSAGRRLNGGIGDKLKPVKDSILTDMAYIEAALDDPE 180 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 + ++E+ +++ N +++ + G II+ G K VI+G N GKSS N ++ Sbjct: 181 HMSLDG-KAEEIRENVINNINALNNILENAGKGRIIKEGIKTVIVGKPNVGKSSFLNYIS 239 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++VAIVTDIPGTTRD L ++ L + I DTAGIRETD+ +E+ GI+R + +AD Sbjct: 240 GEEVAIVTDIPGTTRDALLQNVSLGDISLNIVDTAGIRETDNEIERMGIERAKEHLSDAD 299 Query: 301 LILLLKEIN------SKKEISFPKNIDFIFIGTKSDLYSTYT-EEYDHL-------ISSF 346 L+L++ +++ K+ ++ K+ + I K+DL T EEY IS+ Sbjct: 300 LVLMIIDVSKPLSTEDKELLAEIKSKKTVLILNKTDLERGLTDEEYKEFSEFNLVEISAK 359 Query: 347 TGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LNEKDCGL-- 402 G+E L IK + N +L F+ + +L R E + L D G+ Sbjct: 360 KRIGIERLTEIIKEMFFN--GELDFNNEIYLSNLRQEGAIRRAKESLNMVLESIDSGVSE 417 Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D +L A ++G++TG E L D IF FC+GK Sbjct: 418 DFYTIDLMNAYNAIGEVTGDTTSEDLADKIFKDFCMGK 455 >gi|224532071|ref|ZP_03672703.1| tRNA modification GTPase TrmE [Borrelia valaisiana VS116] gi|224511536|gb|EEF81942.1| tRNA modification GTPase TrmE [Borrelia valaisiana VS116] Length = 464 Score = 177 bits (448), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 144/467 (30%), Positives = 245/467 (52%), Gaps = 43/467 (9%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASL--------RYFFGLD 57 + I A++T L SA+ +IR SG S I K K F ++L Y + LD Sbjct: 9 DDIVALATPFLSSALCVIRSSGASS------ISKFSKIFSNHSALSSASGNTIHYGYILD 62 Query: 58 GR---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114 +D+ ++ ++ +P+SFTG+D+ E HG + + I++ K R+A PGEF+ Sbjct: 63 RENNCKVDEVVVCLYRAPKSFTGQDAIEVMAHGSVVGIKKIIDLFLK-SGFRMAEPGEFT 121 Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174 RAF KIDL +AE++ +++ ++T L++ +SG L + + S + Sbjct: 122 LRAFLAKKIDLTKAEAINEIVFAKTNKTYSLAVNKLSGALFVKIDAIKKNILNFLSAVSV 181 Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234 LD+ ++ N +LN LK I+S+ K+ E I +G +V+ G NAGKSS Sbjct: 182 YLDYEVDDHEINIPFDLILNSKAELKKLINSY----KIYEKIDHGVTLVLAGSVNAGKSS 237 Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294 LFN KKD +IV+ PGTTRD + +L+G L + DTAG+R+ D+ VE+ GI+++ Sbjct: 238 LFNLFLKKDRSIVSSYPGTTRDYIEASFELDGILFNLFDTAGLRDADNFVERLGIEKSNS 297 Query: 295 EVENADLILLLKEINS---KKEISF----PKNIDFIFIGTKSDL-YSTYTEEYDH----- 341 ++ A L++ + ++NS + +ISF N +F+ K DL + TEE+ Sbjct: 298 LIKEASLVIYVIDVNSNLTRDDISFIDSNKSNSKILFVLNKIDLKINKSTEEFVRSSVLN 357 Query: 342 -----LISSFTGEGLEELINKIKSILSNKFKKLPFS--IPSHKRHLYHLSQTVRY-LEMA 393 +IS+ EG++ L +KI++++S + ++ I S +R + L + L++ Sbjct: 358 SSNLIMISTKNLEGIDILYDKIRALISYERVEIGLDDIIISSRRQIQLLEKAYALILDLL 417 Query: 394 SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 S ++ D++A + LG+ITG V E +L+ +F FC+GK Sbjct: 418 SKIDRQVSYDMLAFDAYEIINCLGEITGEVSSEDVLNNMFKNFCLGK 464 >gi|291277158|ref|YP_003516930.1| putative thiophene and furan oxidation protein [Helicobacter mustelae 12198] gi|290964352|emb|CBG40202.1| putative thiophene and furan oxidation protein [Helicobacter mustelae 12198] Length = 441 Score = 177 bits (448), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 125/442 (28%), Positives = 235/442 (53%), Gaps = 25/442 (5%) Query: 19 AISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGE 78 AI ++RLSG + + + +KK+ PR A+L + + +G ++D+ +++ F +P S+T E Sbjct: 5 AIGVVRLSGKDALSITQRLTQKKEFLPRYATLCHVYD-EGEVVDEVIVLYFQAPHSYTCE 63 Query: 79 DSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSE 138 D E HGG+ + IL L + R+A GEF++RAF +G+ID + +++ +LI ++ Sbjct: 64 DVCEIQCHGGVVLAREILR-LCLVNGARMATEGEFTKRAFLHGRIDFSQVQAIGNLIQAQ 122 Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILF 198 + ++ + G L Q + L +F E +D+S+E D+ + +E+ DI Sbjct: 123 SLQASKMMSRQLMGSLRDFVEQSRESLLRALAFSETMIDYSDE-DIPEDALEELGRDISS 181 Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L+ + + K+ I G+ + I+G N GKSSL NA+ ++ AIV+++ GTTRD + Sbjct: 182 LQKQLVQILEFSKMRSKILEGHVLCIVGKPNVGKSSLLNAILMQERAIVSNVAGTTRDTI 241 Query: 259 TIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---KEIS 315 + ++G+LV+I DTAGIRE D +E G++R+ +E +D++L++ + + + +++ Sbjct: 242 EEVIFIDGHLVRIIDTAGIREGGDEIESIGVQRSLRAIEKSDIVLVVFDASRRLDEEDLQ 301 Query: 316 FPKNIDFI------FIGTKSDLYSTYTEEYDHLISSFTG-EGLEELINKIKSILSNKFK- 367 ++D + I K+DL E L G E + IL K + Sbjct: 302 IIAHLDALPRKQVFAICNKNDLAPLLDVEL--LKGKLKGVEFFSMQTQSVGDILELKARI 359 Query: 368 --KLPFSIPSHKRHL----YHL---SQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGK 418 K+ +P+ + L Y + ++ + LEMA + + L++ + +L A + Sbjct: 360 GQKILQEMPAQENILLTADYQIDCVTKAIATLEMAEKHLQTLELELFSYHLNDAIEQISL 419 Query: 419 ITGCVDVEQLLDIIFSKFCIGK 440 +T ++E++ D +FS FC+GK Sbjct: 420 LTKPYNIEEMFDRMFSIFCLGK 441 >gi|116750025|ref|YP_846712.1| tRNA modification GTPase TrmE [Syntrophobacter fumaroxidans MPOB] gi|205829177|sp|A0LLH5|MNME_SYNFM RecName: Full=tRNA modification GTPase mnmE gi|116699089|gb|ABK18277.1| tRNA modification GTPase trmE [Syntrophobacter fumaroxidans MPOB] Length = 470 Score = 176 bits (447), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 130/408 (31%), Positives = 206/408 (50%), Gaps = 28/408 (6%) Query: 58 GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 G+ LD+ L+ +P ++T ED E + H G AV+N ILE L RLA+PGEF+RRA Sbjct: 66 GQSLDEVLVGTMAAPHTYTREDVVEINCHSGFAVLNRILE-LVLREGARLADPGEFTRRA 124 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NG+IDL +AE++ ++I S +E L+ + G L W + L ++S IEA +D Sbjct: 125 FLNGRIDLSQAEAVIEVIRSRSEQGLLLANRLLRGALGEKVRSWREGLLELQSRIEATID 184 Query: 178 FSEEEDVQNFSSKEVLNDILFLKN-------DISSHISQGKLGEIIRNGYKIVILGHSNA 230 F E+D+ + V + F+ +S+ + + +R G +V+ G N Sbjct: 185 F--EDDLDEDALCAVSDRARFVTRLDGELIPALSAALESAERSRALREGVSLVLAGKPNV 242 Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIK 290 GKSSL NAL +D AIVT PGTTRDV+ L G LV++ DTAG+R D +E GI Sbjct: 243 GKSSLLNALVGRDRAIVTPFPGTTRDVVEDTFLLSGILVRVLDTAGLRHDPDEIESFGIA 302 Query: 291 RTFLEVENADLILLL----KEINSKKE--ISFPKNIDFIFIGTKSDLYSTYT-----EEY 339 RT +E AD++L + + ++++ + + + F+ + K DL + E Y Sbjct: 303 RTIQSLEEADIVLCVMDRSRPLSAEDDAVVEAVASRPFVIVLNKEDLPPAISTGKIRERY 362 Query: 340 DHLISSFTGEGLEEL-INKIKSILSNKFKKLPF-----SIPSHKRHLYHLSQTVRYLEMA 393 + L + +++ L+ +F +LP +I + R + + ++ + A Sbjct: 363 GENVPIMAISALRPPDVERLRDFLNQRFLRLPLEQSGSAIVPNLRQRGCIEKALQAMIRA 422 Query: 394 -SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L ++ + LR A L + G + LLD IFS FCIGK Sbjct: 423 RDLISGGGFWELASTELRTARNELDSVLGWNGDDALLDRIFSDFCIGK 470 >gi|291165946|gb|EFE27993.1| tRNA modification GTPase TrmE [Filifactor alocis ATCC 35896] Length = 457 Score = 176 bits (446), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 135/437 (30%), Positives = 218/437 (49%), Gaps = 57/437 (13%) Query: 39 KKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEE 98 K+ + +PR + D +LD+ L + P+P ++T ED E HGG+ ILE Sbjct: 43 KQPEEYPRTLCYGHIVK-DNTVLDEVLTVYMPAPHTYTKEDIVEIQCHGGMIATKMILEW 101 Query: 99 LAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLY 158 + + R+A GEF++RAF NG+IDL +AE++ D+IS++T ++ + G +S+ Sbjct: 102 VLE-NGARMAEHGEFTKRAFLNGRIDLSQAEAIKDIISAQTAKSFLVAQNQLQGSISNKI 160 Query: 159 GQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRN 218 +K+T + I +DF EE D + +E+ +L + ++ + + G +++ Sbjct: 161 KSIRNKVTEDVAKITVAVDFPEE-DTPEVTYEELKESMLLCQTEMKQLLETFETGRLLKE 219 Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G K I+G N GKSSL N + ++ AIVTDI GTTRDV+ + ++G ++I DTAGIR Sbjct: 220 GLKTAIIGKPNVGKSSLLNEILQEQRAIVTDIEGTTRDVIEEMITIDGVPLRIIDTAGIR 279 Query: 279 ETDDIVEKEGIKRTFLEVENA----------------DLILLLKEINSKKEISFPKNIDF 322 +T+DIVE+ G+ R+ ++ A D I+L + K+ Sbjct: 280 DTEDIVEQIGVSRSKEIMQQADLVLVLLDLSRPLTEEDHIILEQSKEKKR---------- 329 Query: 323 IFIGTKSDLYSTYTEEYDHLISSFTGE-----------GLEELINKIKS-------ILSN 364 I + K+DL S + + S GE G+E L +IK I+SN Sbjct: 330 ILLLNKTDLPSVWNPNEE---PSIAGEMVIQTSMSQKIGIETLKEQIKELVFQGQVIISN 386 Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAENLRLASVSLGKITGCV 423 + ++ RH L ++ E A + E+ LDI+ + + LG+ITG Sbjct: 387 D------GMLNNVRHKNSLIHAIKSSEDALDSIEQALPLDILETDFKNCWTYLGEITGET 440 Query: 424 DVEQLLDIIFSKFCIGK 440 E+LLD IF FCIGK Sbjct: 441 VSEELLDTIFKNFCIGK 457 >gi|302842518|ref|XP_002952802.1| hypothetical protein VOLCADRAFT_82002 [Volvox carteri f. nagariensis] gi|300261842|gb|EFJ46052.1| hypothetical protein VOLCADRAFT_82002 [Volvox carteri f. nagariensis] Length = 596 Score = 176 bits (446), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 139/481 (28%), Positives = 233/481 (48%), Gaps = 61/481 (12%) Query: 2 NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF-----PRKASLRYFFGL 56 +++TI A+ +G +++IIR+SG + + + F P+ + Y + Sbjct: 135 TRDEDTIAAIVSGMAHGSVAIIRVSGTDAVSIASRVFRPGGRFRFGWQPKSHRVYYGTAV 194 Query: 57 DG--RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114 DG +LD+ LL+ SP S+T ED E H HGG +L L + RLA PGEF+ Sbjct: 195 DGDESLLDEVLLLAMLSPRSYTAEDVVEVHCHGGGVCGGRVLRALIEA-GARLAKPGEFT 253 Query: 115 RRAFENGKIDLLEAESLADLISSET----EMQRRLSMEGMSGELSSLYGQWIDKLTHIRS 170 RAF NG++DL +AE++++L+++ T + G+ G +S L Q +D L + Sbjct: 254 LRAFLNGRLDLAQAEAVSELLTARTPAAADSALAGLRGGLGGVVSELRSQCLDVLAEL-- 311 Query: 171 FIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNA 230 EA LDF +ED+ E+ + ++ I + + G ++RNG ++ I+G N Sbjct: 312 --EARLDF--DEDLTQIDIPELKRKVERIQAGIERALRTARAGTLLRNGLQVAIVGRPNV 367 Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIK 290 GKSSL NA D AIVT++ GTTRDVL L + G V + DTAGIR+++D+VE+ G++ Sbjct: 368 GKSSLLNAWTNSDRAIVTEVAGTTRDVLEATLSIGGVPVTLLDTAGIRQSNDVVERIGVE 427 Query: 291 RTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEG 350 R+ AD+++++ + + + SD++ + + G Sbjct: 428 RSQAAAAAADIVIMVVDGAAG------------WTDADSDIFKALWGDGPGSSTCKVGRL 475 Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA----------SLNEK-- 398 + + + + F + + S +R L L + L A S+NE+ Sbjct: 476 SLQQQLLLPLVARDTFAAVVRTSASQRRGLEELDAALLQLAGAPKLASGGVSWSINERQG 535 Query: 399 -------------------DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIG 439 D LD +LR A ++LG+++G E++LD +FS+FCIG Sbjct: 536 EALVRSHEALMRLTESIAADLPLDFWTIDLRSALLALGEVSGDEVAEEVLDTVFSRFCIG 595 Query: 440 K 440 K Sbjct: 596 K 596 >gi|224367780|ref|YP_002601943.1| TrmE [Desulfobacterium autotrophicum HRM2] gi|223690496|gb|ACN13779.1| TrmE [Desulfobacterium autotrophicum HRM2] Length = 465 Score = 176 bits (446), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 135/421 (32%), Positives = 215/421 (51%), Gaps = 45/421 (10%) Query: 52 YFFGLD-GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANP 110 Y F + G ++D+ LL+ +P S+T ED E H G + IL+++ R+A P Sbjct: 58 YIFDIKTGYVIDEVLLVTMEAPRSYTAEDVVEIQSHAGHLAMATILDQVVSA-GARIAEP 116 Query: 111 GEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRS 170 GEF++RAF NG+IDL +AE++AD+I++ T +++ +GEL + L + + Sbjct: 117 GEFTKRAFLNGRIDLTQAEAVADIINARTAGALKIAAAQGTGELKDAIHGAREILIELLA 176 Query: 171 FIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISS---HISQGKLGEIIRNGYKIVILGH 227 +EA +DF +E Q+ + I+ +K +++ I + +R+G K+ I G Sbjct: 177 LLEAAIDFPDE--TQDLVPSD--QGIVRVKQVLTACEKFIQTYEEAHFLRDGIKLAICGP 232 Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKE 287 N GKSSL N L +K+ +IVT++PGTTRD++ L++ G +SDTAG+ +TDD+VE+ Sbjct: 233 PNVGKSSLMNRLLQKERSIVTELPGTTRDLIEETLNINGITFLVSDTAGMHQTDDLVERI 292 Query: 288 GIKRTFLEVENADLILLLKEINSKKEIS-------FPKNIDFIFI--------------- 325 GI+R + +DLIL +K + KEIS PK+ I + Sbjct: 293 GIERAKKHIAASDLILFMK--GADKEISESELQSIVPKDKKVILVINKIDLIEGKTAGSA 350 Query: 326 GTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ 385 G + L T + IS+ G++ L I + + +P + RH L + Sbjct: 351 GVEKSLPPTLAQLPQVRISALKNTGIDHLRKTITRLSMENIGEASSVVP-NLRHRTALKR 409 Query: 386 TVRYLEMASL------NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIG 439 ++ L+ A NE+ LDI R A+ LG+ITG +LD IFS FCIG Sbjct: 410 AIKSLKTAEAGFLNGQNEETLALDI-----RRAADLLGEITGNTAGIDILDTIFSNFCIG 464 Query: 440 K 440 K Sbjct: 465 K 465 >gi|160932434|ref|ZP_02079824.1| hypothetical protein CLOLEP_01269 [Clostridium leptum DSM 753] gi|156868393|gb|EDO61765.1| hypothetical protein CLOLEP_01269 [Clostridium leptum DSM 753] Length = 464 Score = 176 bits (446), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 135/462 (29%), Positives = 223/462 (48%), Gaps = 39/462 (8%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL---DGRIL 61 TI A+ST I +IR+SG + + F K + +G +G + Sbjct: 14 TIAAISTAQGVGGIGVIRVSGRDALAIGDRVFQSSGGKKLSQMKGYTAAYGRIRSNGEDI 73 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEEL---AKMPNLRLANPGEFSRRAF 118 D+ + +VF +P S+TGED EF HGG+ + +L + P A PGEF+RRAF Sbjct: 74 DEAVALVFRAPHSYTGEDVVEFSCHGGLYLTRRVLRAVLDGGASP----AGPGEFTRRAF 129 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 NGK+ L EAE++ D+I ++ R ++ G G + D L + + A D+ Sbjct: 130 LNGKMGLTEAEAVMDMIGAKGRQAARTALAGRDGAIHKAIASVKDSLVFTAAHLSAWADY 189 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNA 238 EE D+ E+ + + + +SQ G+ IR G VI G N GKS+L N Sbjct: 190 PEE-DIPQVEEMELTARLKKAEAALERLLSQYDAGKAIREGLNTVIAGRPNVGKSTLMNL 248 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 L+ + +IVT++PGTTRDV+ + + +++SDTAGIR T+D+VE+ G+ R ++ Sbjct: 249 LSGCERSIVTELPGTTRDVVEETVLVGDVTLRLSDTAGIRSTEDLVEQIGVNRAKDRIQT 308 Query: 299 ADLILLL----KEIN--SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH--------LIS 344 ADL+L + +E+N + + + + I + K+DL + +Y L++ Sbjct: 309 ADLVLAVFDASQELNEDDRNLLDSLQGVPSIAVINKTDLDAKIDVKYIKNKVKQIVFLVA 368 Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK------ 398 S G+GLE+L + + + PS Q +A +NE Sbjct: 369 S-EGKGLEDLQQALAELAGTSELE-----PSEGLLATERQQQAAKEALACVNEGLEALEL 422 Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LD + ++ A +L ++TG E ++D +F +FC+GK Sbjct: 423 GMTLDAVTVSIEGAVQALLELTGERASEAVVDQVFHRFCVGK 464 >gi|291541857|emb|CBL14967.1| tRNA modification GTPase TrmE [Ruminococcus bromii L2-63] Length = 455 Score = 176 bits (446), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 135/464 (29%), Positives = 236/464 (50%), Gaps = 33/464 (7%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFI---CKKKKPFPRKASLRYFFGL- 56 MN++ T+ A+ST I +IR+SG ++ + I KK K F + Sbjct: 1 MNYD--TVAAISTAQGEGGIGVIRISGDDALRIADKIFYSVSGKKVTEMKGYTASFGKIS 58 Query: 57 -DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 +G +D+ + +VF +P S+TGED E HGG+ + +L + + A GEF++ Sbjct: 59 ENGEDIDEAVALVFKAPHSYTGEDVVELSCHGGLYITKRVLRAVLNAGAVP-AQAGEFTK 117 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NGKIDL EAE++ D+IS+++ R ++ G L + L + + + A Sbjct: 118 RAFLNGKIDLTEAEAVIDIISAKSRGAARSALCVKEGALRKKIDGVKNDLLSMAAHLSAW 177 Query: 176 LDFSEEEDVQNFSSKEVL----NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAG 231 D+ EE D+ ++ V+ N I K+ + S+ G+ ++ G VI G N G Sbjct: 178 ADYPEE-DIAEVTADSVIETCDNAIKCFKSLLDSY----DCGQAVKKGIDTVIAGRPNVG 232 Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR 291 KS+L N L+ + +IVTDIPGTTRD++ + + ++ +SDTAG+R+T+D VEK G+ R Sbjct: 233 KSTLMNLLSGYEKSIVTDIPGTTRDIVEDTVTVGDVVLNLSDTAGLRDTEDTVEKIGVDR 292 Query: 292 TFLEVENADLILLL----KEINSKKE--ISFPKNIDFIFIGTKSDL-------YSTYTEE 338 +E L+L + +E++ I K + I + K+DL Y + + Sbjct: 293 ARKRLEQCGLLLAVFDNSRELDEDDYALIESAKLVPSIAVINKTDLDNKLDIEYISKNIK 352 Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398 Y IS+ +G+G +EL ++ I + + S++R + + + + ++N Sbjct: 353 YIVYISAISGDGRDELTKAVEKIAGTQNFNPSEGVLSNERQRIAVKNALDSV-VEAMNAL 411 Query: 399 DCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 CG+ D + ++ A L ++TG ++++D +F FC+GK Sbjct: 412 KCGMTFDAVTVSIEDAISHLLELTGERTSDEVVDRVFHNFCVGK 455 >gi|328794276|ref|XP_001123208.2| PREDICTED: tRNA modification GTPase mnmE-like, partial [Apis mellifera] Length = 342 Score = 176 bits (445), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 119/345 (34%), Positives = 189/345 (54%), Gaps = 25/345 (7%) Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF N K+DL +AES+ADLI + ++ R+++ G S + +D L +R +EA Sbjct: 1 RAFLNNKLDLAQAESVADLIDAASQSAARMAVRSXKGAFSEEIHRLVDDLITLRMLVEAT 60 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 LDF EE D+ + + + L++ + + + G ++R G +V++G N GKSSL Sbjct: 61 LDFPEE-DIDFLQAADASGKLKQLRDRLDKVLQHAQQGALLREGMNVVLVGAPNVGKSSL 119 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 NALA D+AIVTDI GTTRD + + L+G V I DTAG+RET+D+VE+ GI+R+ Sbjct: 120 LNALAGDDIAIVTDIAGTTRDTVREQITLDGVPVHIIDTAGLRETEDVVERIGIERSQQA 179 Query: 296 VENADLILLL----KEINSKKE---ISFPKNIDFIFIGTKSDL----YSTYTEEYDHL-- 342 V+ AD+ L+L + +N+ P ++ I + K DL S + E L Sbjct: 180 VQQADVALILIDQCEGLNATTAAILAQLPASLHKIEVHNKIDLTGEAASCVSRETGKLRA 239 Query: 343 ---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA 393 +S+ TGEGL+ L + + + + + + RH+ L Q L A Sbjct: 240 FTDAGQVIALSARTGEGLDLLRQALLQQVGWQGESEGLFL-ARTRHIQALEQAKEELLNA 298 Query: 394 SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCI 438 S+ +++ +++ AE+LRLA +L +ITG + LL +IFS+FCI Sbjct: 299 SMCQEN-QIELFAEHLRLAQNALNEITGEFSADDLLGVIFSRFCI 342 >gi|317178156|dbj|BAJ55945.1| tRNA modification GTPase TrmE [Helicobacter pylori F16] Length = 450 Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 148/455 (32%), Positives = 232/455 (50%), Gaps = 27/455 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A++T AIS+I++SG + + + + +K+ PR A +R F +G +LDK L Sbjct: 3 DTIAAIATPLGKGAISVIKISGNNALNILKQLTQKQDFTPRYAYVRDIFS-NGVLLDKAL 61 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 +I F +P SFTGED E HG + IL+ + RLA GEFS++AF N K+DL Sbjct: 62 VIYFKAPYSFTGEDVCEIQCHGSPLLAQNILQACLNL-GARLAKAGEFSKKAFLNHKMDL 120 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 E E+ LI E E + GEL + D L + + E +D+SEE+ Sbjct: 121 SEIEASVQLILCEDESVLNALARQLKGELKIFIEEARDNLLKLLASSEVLIDYSEEDIPS 180 Query: 186 NFSSKEVLNDILFLKNDISSH---ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 +F + LN L+ I+S + + + G+ + I+G NAGKSSL NA+ + Sbjct: 181 DFLDEVSLN----LEKQIASFKDLLDFSNMQKQKNKGHALSIVGKPNAGKSSLLNAMLLE 236 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 + A+V+DI GTTRD + ++L+G+ V++ DTAGIRE+ D +E+ GI+++ +EN D+I Sbjct: 237 ERALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRESADKIERLGIEKSLKSLENCDII 296 Query: 303 LLLKEINSKKEISFPKNID--------FIFIGTKSDLYSTYTEEYDHLISSFTGEGLEEL 354 L + +++ E ID I + K+DL E LE Sbjct: 297 LGVFDLSKPLEKEDFNLIDTLNRAKKPCIVVLNKNDLAPKLELEILKSYLKIPYSLLETN 356 Query: 355 INKIKSILSNKFKKLPFSIP----SHKRHLYHLSQTVRYLEMASL---NEKDC--GLDII 405 K+ L + +K+ P +K L L+Q LE A N KD L++ Sbjct: 357 TLNSKACLKDLSQKISAFFPKLDTQNKLLLTSLAQKTA-LENAIFELQNAKDHLETLELF 415 Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + +L A +L +T + Q+LD +FS+FC+GK Sbjct: 416 SYHLLSAIENLNSLTRPYETSQMLDSMFSEFCLGK 450 >gi|42525230|ref|NP_970610.1| tRNA modification GTPase TrmE [Bdellovibrio bacteriovorus HD100] gi|81829094|sp|Q6MGL5|MNME_BDEBA RecName: Full=tRNA modification GTPase mnmE gi|39577441|emb|CAE81264.1| probable tRNA modification GTPase trmE [Bdellovibrio bacteriovorus HD100] Length = 479 Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 138/476 (28%), Positives = 240/476 (50%), Gaps = 41/476 (8%) Query: 2 NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG-----L 56 + +K+TI A+ST IS+IR+SGP + IC+ P S + +FG Sbjct: 8 DRDKDTICAISTPHGVGGISVIRVSGPQTLNIVSKICQFLPAHPE--SHKVYFGNLKNSQ 65 Query: 57 DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 G +D+ L F SFTGE+ E HG + IL +L + R A+ GEF+ R Sbjct: 66 TGDEIDEVLATYFKEGRSFTGEEVIEISCHGSPLICQTILNQLVNL-GARPADRGEFTFR 124 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF NGK+DL++AES+ LI S+++ +L++ + G LS + D +T I + EA + Sbjct: 125 AFMNGKLDLVQAESVLSLIESQSQQAAKLALRQLKGTLSHKLEEIEDDMTWILAHAEASI 184 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 DFS E ++ + + ++ + ++ K+G ++++G++IV+ G N GKSSL Sbjct: 185 DFSTE-GIEVIEENVIQVRLKKIEAGLKELVATFKVGRLLKDGFRIVLTGLPNVGKSSLL 243 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLE 295 N + + AIVTDIPGTTRDV+ D EG DTAG+R E D+VE+ GI++++ Sbjct: 244 NLFLEDERAIVTDIPGTTRDVIHGDTTFEGVKFTFVDTAGLRDEATDLVERIGIQKSYEA 303 Query: 296 VENADLILLLKEIN---SKKEISFPKNID---FIFIGTKSDLY---------------ST 334 +D++ + +I +E+ +++D + K+D S Sbjct: 304 QNESDVVFFVYDIEKGLGAEELQILESLDPAKTYILANKTDKIGGSKPLETVEKTLKNSK 363 Query: 335 YTEEYDHLISSFTGEG--LEELINKIKS----ILSNKFKKLPFS---IPSHKRHLYHLSQ 385 + ++ + FT + L K++S L +F L + S+ RH +L++ Sbjct: 364 FFQKLADPAAFFTRRVFFVSALDKKVRSEVLKDLVKEFADLQVENTVLISNARHFENLTR 423 Query: 386 TVRYLEMA-SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + + + S+ + G + +A + A +++ + G +Q++D +F +FCIGK Sbjct: 424 ALENTQRSQSVVAQGLGAEFLALEFKEALIAIHETLGKRFDDQIMDRVFKEFCIGK 479 >gi|254779963|ref|YP_003058070.1| tRNA modification GTPase TrmE [Helicobacter pylori B38] gi|254001876|emb|CAX30126.1| tRNA modification GTPase [Helicobacter pylori B38] Length = 450 Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 149/457 (32%), Positives = 234/457 (51%), Gaps = 31/457 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A++T AISII++SG + + + + +K+ PR A + F DG +LDK L Sbjct: 3 DTIAAIATPLGKGAISIIKISGHNALNILKQLTQKQDFTPRYAYVHDIFS-DGVLLDKAL 61 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 +I F +P SFTGED E HG + IL+ + RLA GEFS++AF N K+DL Sbjct: 62 VIYFKAPYSFTGEDVCEIQCHGSPILAQNILQACLNL-GARLAKAGEFSKKAFLNHKMDL 120 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 E E+ LI E E + GEL + D L + + E +D+SEE+ Sbjct: 121 SEIEASVQLILCEDESVLNALARQLKGELKIFIEEARDNLLKLLASSEVLIDYSEEDIPS 180 Query: 186 NFSSKEVLN---DILFLKNDISSHISQGKLGEIIRN-GYKIVILGHSNAGKSSLFNALAK 241 F + LN I K+ + +Q + RN G+ + I+G NAGKSSL NA+ Sbjct: 181 EFLKEVSLNLEKQIASFKDLLDFSNTQKQ-----RNKGHALSIVGKPNAGKSSLLNAMLL 235 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 ++ A+V+DI GTTRD + ++L+G+ V++ DTAGIRE+ D +E+ GI+++ +EN D+ Sbjct: 236 EERALVSDIKGTTRDTIEEVIELKGHKVRLIDTAGIRESTDKIERLGIEKSLKSLENCDI 295 Query: 302 ILLLKEINSKKEISFPKNID--------FIFIGTKSDLYSTYTEEY--DHLISSFTGEGL 351 IL + +++ E ID I + K+DL E HL +T L Sbjct: 296 ILGVFDLSKPLEKEDFTIIDALNRAKKPCIVVLNKNDLAPKLELEILKSHLKIPYT--LL 353 Query: 352 EELINKIKSILSNKFKKLPFSIP----SHKRHLYHLSQTVRY----LEMASLNEKDCGLD 403 E K+ L + +K+ P +K L L+QT +E+ + L+ Sbjct: 354 ETNTLNSKACLKDLSQKISEFFPKLDTQNKLLLTSLAQTTALENAIIELQNAKNHLETLE 413 Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + + ++ A +L +T + Q+LD +FS+FC+GK Sbjct: 414 LFSYHILSAIENLNLLTRPYETSQMLDSMFSEFCLGK 450 >gi|227529882|ref|ZP_03959931.1| tRNA modification GTP-binding protein TrmE [Lactobacillus vaginalis ATCC 49540] gi|227350186|gb|EEJ40477.1| tRNA modification GTP-binding protein TrmE [Lactobacillus vaginalis ATCC 49540] Length = 462 Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 139/462 (30%), Positives = 242/462 (52%), Gaps = 25/462 (5%) Query: 2 NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLD--- 57 N + +TI A+ST ISIIR+SG V + I + K ++ Y +D Sbjct: 3 NTDNDTIAAISTPVGEGGISIIRISGDDAIPVAQKIYRGKDLAKVHTNTINYGHVIDPDN 62 Query: 58 GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 +D+ ++ V +P ++T ED E + HGG+ N IL+ L R+A PGEF++RA Sbjct: 63 NEEVDEVMVSVMRAPHTYTCEDVVEINCHGGLLATNRILQ-LVLSYGARMAEPGEFTKRA 121 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NG++DL ++E++ DLI ++T+ ++++ + G LS L + + + + +E ++D Sbjct: 122 FLNGRLDLSQSEAVMDLIRAKTDKSMKVALNQLDGNLSHLIRKLRKDILDVLAQVEVNID 181 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 + E + V+ ++K + ++ I + + K G+++R G I+G N GKSSL N Sbjct: 182 YPEYDAVEEMTTKMLKEKATEIRQRIEALLKTAKQGKVLREGLATAIIGRPNVGKSSLLN 241 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 +L +D AIVT++ GTTRDV+ +++ G +K+ DTAGI +T D VEK G++R+ + Sbjct: 242 SLLHEDKAIVTNVAGTTRDVIEEYVNVNGVPLKLIDTAGIHDTKDQVEKIGVERSR-KAL 300 Query: 298 NADLILLLKEINS-------KKEISFPKNIDFIFIGTKSDLYSTYTEEY-------DHLI 343 +A ++LL NS ++ + K+ I I K+DL + + D LI Sbjct: 301 DAADLILLLIDNSEELTAEDRELLEATKDKQRIVILNKTDLPNKVDRDELKKLVGDDKLI 360 Query: 344 SS--FTGEGLEELINKI-KSILSNKFKKLPFSI-PSHKRHLYHLSQTVRYL-EMASLNEK 398 + EG+ +L I K + S+ ++ RH+ L Q L ++ Sbjct: 361 ETSIVKNEGMNQLGETISKMFFEEGIENNQNSVMVTNARHIGLLHQADDALGDVLKGIAA 420 Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++ ++ LG+ITG ++LLD +FS+FC+GK Sbjct: 421 GMPVDLVQIDMTRCWDLLGEITGDSYQDELLDQLFSQFCLGK 462 >gi|94987514|ref|YP_595447.1| tRNA modification GTPase TrmE [Lawsonia intracellularis PHE/MN1-00] gi|205415772|sp|Q1MPF1|MNME_LAWIP RecName: Full=tRNA modification GTPase mnmE gi|94731763|emb|CAJ55126.1| predicted GTPase [Lawsonia intracellularis PHE/MN1-00] Length = 459 Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 141/415 (33%), Positives = 216/415 (52%), Gaps = 35/415 (8%) Query: 52 YFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPG 111 Y LD L + P+P +FTGED E H HGG ++ ILE + N+RLA PG Sbjct: 54 YLVAPTNEFLDDILAVYMPAPYTFTGEDVVELHCHGGHFLLLTILETVL-CKNIRLAKPG 112 Query: 112 EFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWI----DKLTH 167 EFS+RAF NG++DL +AE++A+LI++ + + L+ S L L GQ I ++ Sbjct: 113 EFSQRAFLNGRMDLTQAEAVAELIAASSRNEVLLA----SNRLKGLLGQKIIDIRRRIEE 168 Query: 168 IRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227 +R +I +DF EEE F ++ +N +L + I I + + G + + G Sbjct: 169 LRVWICLAVDFPEEES-GIFPLEKFINGLLEIHEIIQKLIHAAERSRCWKEGVTVALAGA 227 Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKE 287 NAGKSSL NAL K+ AIVT+ PGTTRD L + + +++ DTAG+R T D +E++ Sbjct: 228 VNAGKSSLLNALLGKERAIVTEHPGTTRDFLEECIIVNSLSIRLIDTAGLRVTSDPIEEQ 287 Query: 288 GIKRTFLEVENADLILLLKE--INSKKEISFPKNIDF-----IFIGTKSDLY---STYTE 337 GI++ +++ AD+IL + + + +E N +F I + K DL S +TE Sbjct: 288 GIQKGREKIDEADVILFIIDGTVGVTEESKLLIN-NFGVERTILVWNKVDLKVPPSNWTE 346 Query: 338 EYDH------LISSFTGEGLEELINKIKS-ILSNKFKKLPF--SIPSHKRHLYHLSQTVR 388 Y +S+ TG G+EEL+ + + +LS + P +I + R + S + Sbjct: 347 LYTSSQVSGICVSAKTGSGIEELLVLLYNFVLSQHNAQEPTFDTIVPNMRQVEVFSLVLE 406 Query: 389 YLEMASLNE---KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E+ SL E D+ A L S L I G E++L+ IF+ FCIGK Sbjct: 407 --EIRSLYEDIRSGIPYDLCAVMLENISSMLNSIIGFDTPEEVLNRIFASFCIGK 459 >gi|225575683|ref|ZP_03784293.1| hypothetical protein RUMHYD_03776 [Blautia hydrogenotrophica DSM 10507] gi|225037100|gb|EEG47346.1| hypothetical protein RUMHYD_03776 [Blautia hydrogenotrophica DSM 10507] Length = 364 Score = 174 bits (440), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 113/305 (37%), Positives = 174/305 (57%), Gaps = 8/305 (2%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK---KPFPRKASLRYFFGL---DGRI 60 TI A+ST S I I+R+SG V + I + K K + S +G + + Sbjct: 4 TIAAISTAMSASGIGIVRISGEHSVDVIKKIYRSKNGKKQLDQVPSHTIHYGYIYDEEEM 63 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+ L++V +P ++TGED+ E HGG+ + +L+ + K + A PGEF++RAF N Sbjct: 64 IDEVLVMVMRAPRTYTGEDTVEIDCHGGVCAMRRVLDTVLK-HGAKTAEPGEFTKRAFLN 122 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GK+DL +AE++ D+I+S+ E + SM + G + + L + ++IE+ LD E Sbjct: 123 GKLDLSQAEAVIDVINSKNEFALKSSMSQLKGSVKREIEKIRSSLIYHIAYIESALDDPE 182 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 + + +E+ K I +S + G++IR G + VILG NAGKSSL N L Sbjct: 183 HISIDGYG-EELKMTTTQEKEKIYRLLSTVREGKMIREGIQTVILGKPNAGKSSLLNLLI 241 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIVTDI GTTRDVL + L G +KI DTAGIR+T+D+VE+ G+ + + AD Sbjct: 242 GENKAIVTDIAGTTRDVLEECITLSGISLKIIDTAGIRDTEDLVEQIGVDKAKEMGKEAD 301 Query: 301 LILLL 305 LIL + Sbjct: 302 LILYV 306 >gi|288925846|ref|ZP_06419777.1| tRNA modification GTPase TrmE [Prevotella buccae D17] gi|288337501|gb|EFC75856.1| tRNA modification GTPase TrmE [Prevotella buccae D17] Length = 512 Score = 174 bits (440), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 110/346 (31%), Positives = 190/346 (54%), Gaps = 17/346 (4%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICK----KKKPFPRKASLRY--FFGLDGRI 60 TI A++T A AI ++R+SG ++ + I K +K + +L Y + Sbjct: 9 TICALATPA-GGAIGVVRVSGSEAIKIADHIFKAKSGRKLANAKGNTLHYGEIVNHNRET 67 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D + V+ +P S+TGED+ EF HG ++ +L L + R A PGE+++RA+ N Sbjct: 68 IDDVMASVYRAPFSYTGEDAVEFSCHGSQYILQEVLHLLIQ-NGCRQAEPGEYTQRAYLN 126 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GK+DL +AE++ADLI+S ++++ + G S+ D+L + S +E +LDFS+ Sbjct: 127 GKMDLSQAEAVADLIASTNRATHKMAISQLKGHFSNELVLLRDRLLKMTSLLELELDFSD 186 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E+++ K++L + I+S I + G ++NG + I+G +N GKS+L N L Sbjct: 187 HEELEFADRKQLLELACQIDEKITSLIQSFETGNALKNGIPVAIVGKTNVGKSTLLNRLL 246 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIV+DI GTTRD + + G + DTAGIR+T+D VE+ GI RT+ +++ A Sbjct: 247 HEERAIVSDIHGTTRDTIEDTTLINGVAFRFIDTAGIRKTEDEVERIGIDRTYQKIDQAT 306 Query: 301 LILLLKEINSK-------KEISFPKNIDFIFIGTKSDLYSTYTEEY 339 +++ + + + K KN+ I + K D+ T++ Y Sbjct: 307 VVVWMIDTSPSALEQEDMKSKCIGKNV--ILVHNKVDIARTHSPSY 350 >gi|217033917|ref|ZP_03439341.1| hypothetical protein HP9810_870g49 [Helicobacter pylori 98-10] gi|216943680|gb|EEC23125.1| hypothetical protein HP9810_870g49 [Helicobacter pylori 98-10] Length = 450 Score = 174 bits (440), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 146/455 (32%), Positives = 233/455 (51%), Gaps = 27/455 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A++T AIS+I++SG + + + + +K+ PR A +R F +G +LDK L Sbjct: 3 DTIAAIATPLGKGAISVIKISGNNALNILKQLTQKQDFTPRYAYVRDIFS-NGVLLDKAL 61 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 +I F +P SFTGED E HG + IL+ + RLA GEFS++AF N K+DL Sbjct: 62 VIYFKAPYSFTGEDVCEIQCHGNPLLAQNILQACLNL-GARLAKAGEFSKKAFLNHKMDL 120 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 E E+ LI E E + GEL + + L + + E +D+SEE+ Sbjct: 121 SEIEASVQLILCEDESVLNALARQLKGELKIFIEEARNNLLKLLASSEVLIDYSEEDIPS 180 Query: 186 NFSSKEVLNDILFLKNDISSH---ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 +F ++ LN L+ I+S + + + G+ + I+G NAGKSSL NA+ + Sbjct: 181 DFLNEVSLN----LEKQIASFKDLLDFSNMQKQKNKGHTLSIVGKPNAGKSSLLNAMLLE 236 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 + A+V+DI GTTRD + ++L+G+ V++ DTAGIRE+ D +E+ GI+++ +EN D++ Sbjct: 237 ERALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRESADKIERLGIEKSLKSLENCDIV 296 Query: 303 LLLKEINSKKEISFPKNID--------FIFIGTKSDLYSTYTEEYDHLISSFTGEGLEEL 354 L + +++ E ID I + K+DL E LE Sbjct: 297 LGVFDLSKPLEQEDFNLIDTLNRAKKPCIVVLNKNDLAPKLELETLKSYLKIPYSLLETN 356 Query: 355 INKIKSILSNKFKKLPFSIP----SHKRHLYHLSQTVRYLEMASL---NEKDC--GLDII 405 K+ L + +K+ P +K L L+Q LE A N KD L++ Sbjct: 357 TLNSKACLKDLSQKISAFFPKLDTQNKLLLTSLAQKTA-LENAIFELQNAKDHLETLELF 415 Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + +L A +L +T + Q+LD +FS+FC+GK Sbjct: 416 SYHLLSAIENLNSLTRPYETSQMLDSMFSEFCLGK 450 >gi|317154267|ref|YP_004122315.1| tRNA modification GTPase TrmE [Desulfovibrio aespoeensis Aspo-2] gi|316944518|gb|ADU63569.1| tRNA modification GTPase TrmE [Desulfovibrio aespoeensis Aspo-2] Length = 469 Score = 173 bits (439), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 146/479 (30%), Positives = 230/479 (48%), Gaps = 54/479 (11%) Query: 2 NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-------PFPRKASLRYFF 54 ++TI A++T + I+R+SG + I + + P+ +L Y Sbjct: 5 RRSRDTIAAIATPPGDGGVGIVRISGDRSRAIAARIFRPARASFTEFIPY----TLHYGR 60 Query: 55 GLDGR--ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGE 112 +DGR +LD L+ P P S+TGED E + HGG AV+ +LEE+ + RLA GE Sbjct: 61 IVDGRDAVLDDVLVACMPGPGSYTGEDVVEINCHGGRAVLAAVLEEVLRC-GARLAERGE 119 Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKL----THI 168 F+ RAF +G++DL +AE++A++I + T L+ +LS L GQ I L + Sbjct: 120 FTYRAFMHGRLDLTQAEAVAEMIHAPTRSAAHLA----QAKLSGLLGQRIAALRTRLEAL 175 Query: 169 RSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHS 228 R+ + +DF ++E V+ + + + ++ DI + R G +V+ G Sbjct: 176 RAALAVAVDFPDDE-VECLPPEALAGGVAGVRVDIMDLLRAVDRTRTWREGALVVLAGRV 234 Query: 229 NAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD------D 282 NAGKSSL N L + AIVTD PGTTRD L + L+G V++ DTAG+R D Sbjct: 235 NAGKSSLMNGLLGRTRAIVTDQPGTTRDYLEETVTLDGLSVRLVDTAGMRADTAAAPRID 294 Query: 283 IVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYST 334 VE G+ ++ ADL+LLL + + + P+ + T+ DL Sbjct: 295 AVEAAGMAMGRELMDRADLVLLLADGTAPLDSGTLSLATVLSPERTLAVL--TRRDLPGF 352 Query: 335 YTEEYDHL---------ISSFTGEGLEELINKIK-SILSNKFKKLPFSIPSHKRH---LY 381 L ISS TG GL+ L +++ +L+ + P + + R L Sbjct: 353 DPAHGAPLAGLGFELVEISSVTGHGLDTLCARVRERVLAGAGQPDPDELAPNARQAAILA 412 Query: 382 HLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++ +R LE +L D++ L A V+L ITG + +++L IF FCIGK Sbjct: 413 EAAEELRQLEADALAA--VPYDLLGVRLETACVTLSSITGEITSQEVLASIFDTFCIGK 469 >gi|157781563|gb|ABV72136.1| GTP-binding thiophene and furan oxidation protein [Tetragenococcus solitarius] Length = 269 Score = 173 bits (439), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 99/270 (36%), Positives = 161/270 (59%), Gaps = 6/270 (2%) Query: 11 VSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LDGR---ILDKGL 65 +ST AISI+RLSG + + K K+ + S +G +D + +LD+ + Sbjct: 1 ISTPPGEGAISIVRLSGEEAIPAADRVFKAKRSLEQAQSHTIHYGHIVDPKTNELLDEVM 60 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + + +P++FT ED E + HGGI VVN IL+ L + RLA PGEF++RAF NG+IDL Sbjct: 61 VSIMRAPKTFTREDIVEINCHGGIVVVNQILQLLLR-SGARLAEPGEFTKRAFLNGRIDL 119 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ DLI ++T+ +++ + G LS L ++ + + +E ++D+ E +DV+ Sbjct: 120 SQAEAVMDLIRAKTDKAMNVALNQLDGNLSHLIRSLRQEVLNTLAQVEVNIDYPEYDDVE 179 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 +SK +L +K I S ++ + G+I+R G I+G N GKSSL N L K++ A Sbjct: 180 EMTSKLLLEKATQVKQQIQSLLATAQQGKILREGLNTAIIGRPNVGKSSLLNQLLKEEKA 239 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 IVT++ GTTRDV+ +++ G +K+ DTA Sbjct: 240 IVTEVAGTTRDVVEEYVNVRGVPLKLIDTA 269 >gi|158520121|ref|YP_001527991.1| tRNA modification GTPase TrmE [Desulfococcus oleovorans Hxd3] gi|158508947|gb|ABW65914.1| tRNA modification GTPase TrmE [Desulfococcus oleovorans Hxd3] Length = 462 Score = 173 bits (439), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 137/452 (30%), Positives = 217/452 (48%), Gaps = 38/452 (8%) Query: 20 ISIIRLSGPSCFQVCEFICKKKKPFPRKASL--------RYFFGL---DGRILDKGLLIV 68 I I+RLSGP + + + P ASL R + G D ++D+ LL+V Sbjct: 18 IGIVRLSGPRAVAIALSVFSSR-PDAAAASLSEAGAESHRMYHGYVFDDDALVDEVLLVV 76 Query: 69 FPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEA 128 +P S+TGED AE H HGG AVV+ + + L A PGEF++RAF NG+IDL +A Sbjct: 77 MRAPRSYTGEDVAEIHTHGGPAVVSAVCD-LVLRAGAEPAAPGEFTQRAFLNGRIDLTQA 135 Query: 129 ESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFS 188 E++AD+I + + Q + + +SGE+ L + + +EA ++F ++ + +FS Sbjct: 136 EAVADMIEAASIEQVKAAAAQVSGEIRQAVSGLKQSLAGLMAEMEAAIEFDDQVE-GSFS 194 Query: 189 SKEVL----NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 ++ ++L D+ + G G +VI G NAGKS+L N L D Sbjct: 195 PEKAACRIETEVLPCLQDLLDRRRATEAG----RGATVVIAGPPNAGKSTLLNRLLGTDR 250 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLIL 303 A+V++IPGTTRD++ + + G +DTAG+R ++ D VE G+ R ++ ADLIL Sbjct: 251 ALVSEIPGTTRDLVDGRVWVSGTPFVFTDTAGLRPDSGDAVEAMGMARARTAMDQADLIL 310 Query: 304 LLKEI------NSKKEISFPKNIDFIFIGTKSDL--------YSTYTEEYDHLISSFTGE 349 + + S F+ + KSDL S + +S+ G Sbjct: 311 FVVDAAAGMGPESGALFCEASAKPFVVVANKSDLPEARGFMPPSAWPAAPVVHVSALHGL 370 Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD-CGLDIIAEN 408 G++EL N + ++ + + RH L L A K+ D+ + Sbjct: 371 GIKELKNLLVRMVGEQAVPASGRAAPNPRHRAALVACREALVAAGAALKNGVPADVAVLD 430 Query: 409 LRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +R A L +I+G +LD IF +FCIGK Sbjct: 431 IRAAVDRLNEISGEGAGPTVLDAIFERFCIGK 462 >gi|154149158|ref|YP_001406236.1| tRNA modification GTPase TrmE [Campylobacter hominis ATCC BAA-381] gi|205829130|sp|A7I145|MNME_CAMHC RecName: Full=tRNA modification GTPase mnmE gi|153805167|gb|ABS52174.1| tRNA modification GTPase TrmE [Campylobacter hominis ATCC BAA-381] Length = 466 Score = 173 bits (439), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 140/479 (29%), Positives = 232/479 (48%), Gaps = 59/479 (12%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF--------------------- 44 ETI AV+T ISI+RLSG + + + + K + Sbjct: 3 ETIVAVATAHGIGGISIVRLSGENALSLSDILINKNRKKNKTQNSVSSSQNRIQNFKKIN 62 Query: 45 --PRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKM 102 PR A+L + DG +D+ ++I + SP SFTGED EF +HGG + N I++EL Sbjct: 63 LKPRYATLCELYDNDGNFMDESVVIYYKSPNSFTGEDIVEFQIHGGFTLENLIMDELI-T 121 Query: 103 PNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWI 162 R+A PGEFS+RAF N K+DL +AE++ +I S ++ ++ + GEL + Sbjct: 122 NGARIAMPGEFSKRAFLNDKMDLSKAEAIQSIILSRSKSAAKILARNLHGELKNFVIDLR 181 Query: 163 DKLTHIRSFIEADLDFSEEE-------DVQNFSSKEVLNDILFLKNDISSHISQGKLGEI 215 ++ +F+E +D+++++ +QN S+ + K D + IS + G Sbjct: 182 KEIVKTMAFVETCIDYADDDLPNDILDKIQNLLSENIT------KIDEITQISASRRG-- 233 Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 + G+K+ I+G N GKSS+ N+L K AIV+D GTTRD + +L + +L++I DTA Sbjct: 234 LLEGFKVAIIGKPNVGKSSILNSLLKFSRAIVSDEAGTTRDRIEENLQIGSHLIRIIDTA 293 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF--IGTKSDLYS 333 GIR++++ VE GI + AD+IL + ++ +E F K + IF + + D Sbjct: 294 GIRKSENSVENIGISYSIKAANEADIILAV--FDASRE--FDKEDEKIFEILQNQKDKKI 349 Query: 334 TYTEEYDHLISSFTGEGLEELI--------NKIKSILSNKFKKLPFS--IPSHKRHLYHL 383 L F + + I +L++ F + S R + Sbjct: 350 IKILNKIDLALKFKAGNSDNFLKISAKNDTKIITKVLNDYLNSQNFDGIMLSSNRQIMAF 409 Query: 384 SQTVRYLEMAS--LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 S + L+ A LNE L++ A L +A + I + +++L+ +FS FC+GK Sbjct: 410 SNAGKALKRAQNLLNEN--SLELFAFELNIAIKEIASIYKPFERDEILESMFSNFCLGK 466 >gi|261840127|gb|ACX99892.1| tRNA modification GTPase TrmE [Helicobacter pylori 52] Length = 450 Score = 173 bits (439), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 148/456 (32%), Positives = 233/456 (51%), Gaps = 29/456 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A++T AIS+I++SG + + + + +K+ PR A +R F +G +LDK L Sbjct: 3 DTIAAIATPLGKGAISVIKISGNNALNILKQLTQKQDFTPRYAYVRDIFS-NGVLLDKAL 61 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 +I F +P SFTGED E HG + IL+ + RLA GEFS++AF N K+DL Sbjct: 62 VIYFKAPYSFTGEDVCEIQCHGNPLLAQNILQACLNL-GARLAKAGEFSKKAFLNHKMDL 120 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 E E+ LI E E + GEL + + L + + E +D+SEE+ Sbjct: 121 SEIEASVQLILCEDESVLNALARQLKGELKIFIEEARNNLLKLLASSEVLIDYSEEDIPS 180 Query: 186 NFSSKEVLN---DILFLKNDISSHISQGKLGEIIRN-GYKIVILGHSNAGKSSLFNALAK 241 +F + LN I K+ + +Q + RN G+ + I+G NAGKSSL NA+ Sbjct: 181 DFLDEVSLNLEKQIASFKDLLDFSNTQKQ-----RNKGHALSIVGKPNAGKSSLLNAMLL 235 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 ++ A+V+DI GTTRD + ++L+G+ V++ DTAGIRE+ D +E+ GI+++ +EN D+ Sbjct: 236 EERALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRESTDKIERLGIEKSLKSLENCDI 295 Query: 302 ILLLKEINSKKEISFPKNID--------FIFIGTKSDLYSTYTEEYDHLISSFTGEGLEE 353 +L + +++ E ID I + K+DL E LE Sbjct: 296 VLGVFDLSKPLEQEDFNLIDTLNRTKKPCIVVLNKNDLVPKLELEILKSYLKIPYSLLET 355 Query: 354 LINKIKSILSNKFKKLPFSIP----SHKRHLYHLSQTVRYLEMASL---NEKDC--GLDI 404 K+ L + +K+ P +K L L+Q LE A N KD L++ Sbjct: 356 NTLNSKACLKDLSQKISTFFPKLDTQNKLLLTSLAQKTA-LENAIFELQNAKDHLETLEL 414 Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + +L A +L +T + Q+LD +FS+FC+GK Sbjct: 415 FSYHLLSAIENLNSLTRPYETSQMLDSMFSEFCLGK 450 >gi|269122719|ref|YP_003310896.1| tRNA modification GTPase TrmE [Sebaldella termitidis ATCC 33386] gi|268616597|gb|ACZ10965.1| tRNA modification GTPase TrmE [Sebaldella termitidis ATCC 33386] Length = 456 Score = 173 bits (438), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 150/461 (32%), Positives = 237/461 (51%), Gaps = 33/461 (7%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL--DG-RILD 62 ETI A+ST I IIR+SG F++ I K K P ++ +G DG +LD Sbjct: 3 ETIAAISTPRGEGGIGIIRISGDDSFEILNKIFKAKNPNKDLGFYKFNYGFIYDGDYMLD 62 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 + + + P+++T ED E + HGG V ILE + K R A GEF++RAF NG+ Sbjct: 63 EAMTVRMKGPKTYTCEDVVEINCHGGYLVTQKILELVLK-KGARHAEKGEFTKRAFMNGR 121 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 IDL +AE++ D+I +TE LS+E + G+L L + + + LD+ EE Sbjct: 122 IDLSQAEAVMDIIQGKTEKSISLSLEQLRGDLRDKIQNLKKLLLDVTAHVNVVLDYPEE- 180 Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 + + +++ + +I+ I+ G+ I+ G K I+G N GKS+L N+L K+ Sbjct: 181 GIDEPLPAHLRDNLENVHTEINKLINSYDKGKKIKEGIKTAIIGKPNVGKSTLLNSLLKE 240 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 + AIVT IPGTTRD++ +++ G + + DTAGIRET+D+VE G++++ +E +DLI Sbjct: 241 ERAIVTHIPGTTRDIIEEVINVRGIPLVLVDTAGIRETEDLVENIGVEKSKEIIEKSDLI 300 Query: 303 LLL--------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLE-- 352 L + K+ + E+ N I + K DL T E I F GE LE Sbjct: 301 LFVLDASRELEKDDHQIIELIRENNKKAIILLNKIDLSRKITREN---IDFFDGEILEIS 357 Query: 353 ------------ELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399 + N I + + + +KL + HK L + V + + + Sbjct: 358 AKEETGIEEMEERIYNYILEEDVEDSSEKLVITNIRHKSALEKTKEAVE--NIFETIDSE 415 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D+I+ +L+ A SL +ITG + E +LD +FS FC+GK Sbjct: 416 MPMDLISVDLKEALDSLSEITGEISSEDILDHVFSNFCVGK 456 >gi|315585839|gb|ADU40220.1| tRNA modification GTPase TrmE [Helicobacter pylori 35A] Length = 450 Score = 172 bits (437), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 142/454 (31%), Positives = 230/454 (50%), Gaps = 25/454 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A++T AIS+I++SG S + + + +K+ PR A +R F +G +LDK L Sbjct: 3 DTIAAIATPLGKGAISVIKISGNSALNILKQLTQKQDFTPRYAYVRDIFS-NGVLLDKVL 61 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 +I F +P SFTGED E HG + IL+ + RLA GEFS++AF N K+DL Sbjct: 62 VIYFKAPYSFTGEDVCEIQCHGNPLLAQNILQACLNL-GARLAKAGEFSKKAFLNHKMDL 120 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 E E+ LI E E + GEL + + L + + E +D+SEE+ Sbjct: 121 SEIEASVQLILCEDESVLNALARQLKGELKIFIEEARNNLLKLLASSEVLIDYSEEDIPS 180 Query: 186 NFSSKEVLNDILFLKNDISSH---ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 +F ++ LN L+ I+S + + + G+ + I+G NAGKSSL NA+ + Sbjct: 181 DFLNEVSLN----LEKQIASFKDLLDFSNMQKQKNKGHALSIVGKPNAGKSSLLNAMLLE 236 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 + A+V+DI GTTRD + ++L+G+ V++ DTAGIRE+ D +E+ GI+++ +EN D++ Sbjct: 237 ERALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRESADKIERLGIEKSLKSLENCDIV 296 Query: 303 LLLKEINSKKEISFPKNID--------FIFIGTKSDLYSTYTEEYDHLISSFTGEGLEEL 354 L + +++ E ID I + K+DL E LE Sbjct: 297 LGVFDLSKPLEKEDFNLIDTLNRAKKPCIVVLNKNDLAPKLELEILKSYLKIPYSLLETN 356 Query: 355 INKIKSILSNKFKKLPFSIP----SHKRHLYHLSQTVRY----LEMASLNEKDCGLDIIA 406 K+ L + +K+ P +K L L+Q E+ + L++ + Sbjct: 357 TLNSKACLKDLSQKISAFFPKLDTQNKLLLTSLAQKTALENAIFELQNAKNHLETLELFS 416 Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +L A +L +T + Q+LD +FS+FC+GK Sbjct: 417 YHLLSAIENLNSLTRPYETSQMLDSMFSEFCLGK 450 >gi|207091818|ref|ZP_03239605.1| tRNA modification GTPase TrmE [Helicobacter pylori HPKX_438_AG0C1] Length = 450 Score = 172 bits (437), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 146/457 (31%), Positives = 238/457 (52%), Gaps = 31/457 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A++T + AISII++SG + V + + +K+ PR A +R F DG +LDK L Sbjct: 3 DTIAAIATPSGKGAISIIKISGHNALNVLKQLTQKQDFTPRYAYVRDIFS-DGVLLDKAL 61 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 +I F +P SFTGED E HG + IL+ + RLA GEFS++AF N K+DL Sbjct: 62 VIYFKAPYSFTGEDVCEIQCHGSPLLAQNILQACLNL-GARLAKAGEFSKKAFLNHKMDL 120 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 E E+ LI E E + GEL + + L + + E +D+SEE+ Sbjct: 121 SEIEASVQLILCEDESVLNALARQLKGELKIFIEEARNDLLKLLASSEVLIDYSEEDIPS 180 Query: 186 NFSSKEVLN---DILFLKNDISSHISQGKLGEIIRN-GYKIVILGHSNAGKSSLFNALAK 241 +F + N I K+ + +Q + RN G+ + I+G NAGKSSL NA+ Sbjct: 181 DFLKEVSFNLEKQIASFKDLLDFSNAQKQ-----RNKGHALSIVGKPNAGKSSLLNAMLL 235 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 ++ A+V+DI GTTRD + ++L+G+ V++ DTAGIRE+ D +E+ GI+++ +EN D+ Sbjct: 236 EERALVSDIKGTTRDTIEEVIELKGHKVRLIDTAGIRESADKIERLGIEKSLKSLENCDI 295 Query: 302 ILLLKEINS---KKEISFPKNID-----FIFIGTKSDLYSTYTEEY--DHLISSFTGEGL 351 IL + +++ K++ + + ++ I + K+DL E HL ++ L Sbjct: 296 ILGVFDLSKPLEKEDFNLIETLNRAKKPCIVVLNKNDLAPKLELEILKSHLKIPYS--LL 353 Query: 352 EELINKIKSILSNKFKKLPFSIP----SHKRHLYHLSQTVRY----LEMASLNEKDCGLD 403 E K+ L + +K+ P +K L L+Q E+ + L+ Sbjct: 354 ETNTLNSKACLKDLGQKISAFFPKLDTQNKLLLTSLAQKTALENAITELQNAKNHLETLE 413 Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + + +L A +L +T + Q+LD +FS+FC+GK Sbjct: 414 LFSYHLLSAIENLNLLTRPYETSQMLDSMFSEFCLGK 450 >gi|257461373|ref|ZP_05626469.1| tRNA modification GTPase TrmE [Campylobacter gracilis RM3268] gi|257441096|gb|EEV16243.1| tRNA modification GTPase TrmE [Campylobacter gracilis RM3268] Length = 582 Score = 172 bits (436), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 108/302 (35%), Positives = 168/302 (55%), Gaps = 10/302 (3%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 ETI A++T I I+R+SG + + + PR A+L F G + + Sbjct: 3 ETIAAIATAHGIGGICIVRISGEEALSIALSLSHRSSLRPRYATLVNLFDASGEAFGEAI 62 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 LI F +P SFTGED E HGG + L+ + + R+ANPGEFS+RAF NGK+DL Sbjct: 63 LIYFKAPHSFTGEDVVEVQTHGGFTASSLALDAVLAL-GARIANPGEFSKRAFLNGKMDL 121 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE--- 182 +AE+++DLI+S ++ ++ + GEL+ L +F+E +D++E++ Sbjct: 122 SKAEAISDLINSRSQSAAKILARNLRGELADFVANLRAALVKTLAFVEVCIDYAEDDLPS 181 Query: 183 DV-QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 DV QN S+E+L+ + I+ IS+ + G I G+K+ I+G N GKSS+ N++ Sbjct: 182 DVLQN--SQEMLSQNIASLEKIT-RISRSRRGLI--EGFKVAIVGKPNVGKSSILNSMLS 236 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 AIV+D GTTRD++ L + +L++I DTAGIR + +E GI + AD+ Sbjct: 237 FSRAIVSDEAGTTRDLIEESLQIGTHLIRIVDTAGIRHSGSKLESIGISYSLRAASEADV 296 Query: 302 IL 303 IL Sbjct: 297 IL 298 >gi|157781579|gb|ABV72144.1| GTP-binding thiophene and furan oxidation protein [Enterococcus canis] Length = 270 Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 99/271 (36%), Positives = 161/271 (59%), Gaps = 7/271 (2%) Query: 11 VSTGALPSAISIIRLSGPSCFQVCEFI-CKKKKPFPRKASLRYFFG--LDGR---ILDKG 64 +ST AISI+RLSG + + + KK AS +G +D R +LD+ Sbjct: 1 ISTPPGEGAISIVRLSGEDAVSIADLVFSAGKKQLCDVASHTIHYGHIIDRRREQLLDEV 60 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 ++ V +P++FT ED E + HGG+ V N +L+ L + RLA PGEF++RAF NG++D Sbjct: 61 MVTVMRAPKTFTREDVIEINCHGGMVVANQVLQLLLR-EGARLAEPGEFTKRAFLNGRVD 119 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ DLI ++T+ +L+++ + G LS L ++ + +E ++D+ E +DV Sbjct: 120 LSQAEAVMDLIRAKTDKAMQLAIQQLDGNLSQLIRTLRQEILETLAQVEVNIDYPEYDDV 179 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + +++ +L F++ I + + + G+I+R G I+G N GKSSL N L K+D Sbjct: 180 EELTTQLLLEKARFVQAQIQNLLVTAQQGKILREGLSTAIIGRPNVGKSSLLNHLLKEDK 239 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 AIVTDI GTTRDV+ +++ G +K+ DTA Sbjct: 240 AIVTDIAGTTRDVIEEYVNVRGVPLKLVDTA 270 >gi|108563803|ref|YP_628119.1| tRNA modification GTPase TrmE [Helicobacter pylori HPAG1] gi|123073715|sp|Q1CRH7|MNME_HELPH RecName: Full=tRNA modification GTPase mnmE gi|107837576|gb|ABF85445.1| putative thiophene/furan oxidation protein [Helicobacter pylori HPAG1] Length = 461 Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 148/458 (32%), Positives = 231/458 (50%), Gaps = 33/458 (7%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A++T + AISII++SG + + + + KK+ PR A +R F DG +LDK L Sbjct: 14 DTIAAIATPSGKGAISIIKISGHNALNILKQLTKKQDFTPRYAYVRDIFS-DGVLLDKAL 72 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 +I F +P SFTGED E HG + IL+ + RLA GEFS++AF N K+DL Sbjct: 73 VIYFKAPYSFTGEDVCEIQCHGSPLLAQNILQACLNL-GARLAKAGEFSKKAFLNHKMDL 131 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 E E+ LI E E + GEL + L + + E +D+SEE+ Sbjct: 132 SEIEASVQLILCEDESVLNALARQLKGELKIFIEEARSDLLKLLASSEVLIDYSEEDIPS 191 Query: 186 NFSSKEVLN---DILFLKN--DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 +F + N I K+ D S+ Q G+ + I+G NAGKSSL NA+ Sbjct: 192 DFLKEVSFNLEKQIASFKDLLDFSNAQKQK------NKGHALSIVGKPNAGKSSLLNAML 245 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ A+V+DI GTTRD + ++L+G+ V++ DTAGIRE+ D +E+ GI+++ +EN D Sbjct: 246 LEERALVSDIKGTTRDTIEEVIELKGHKVRLIDTAGIRESADKIERLGIEKSLKSLENCD 305 Query: 301 LILLLKEINSKKEISFPKNID--------FIFIGTKSDLYSTYTEEY--DHLISSFTGEG 350 +IL + +++ E ID I + K+DL E HL ++ Sbjct: 306 IILGVFDLSKPLEKEDFTIIDALNRAKKPCIVVLNKNDLAPKLELEILKSHLKIPYS--I 363 Query: 351 LEELINKIKSILSNKFKKLPFSIP----SHKRHLYHLSQTVRY----LEMASLNEKDCGL 402 LE K+ L + +K+ P +K L L+Q E+ + L Sbjct: 364 LETNTLNSKACLKDLGQKISAFFPKLDTQNKLLLTSLAQKTALENAITELQNAKNHLETL 423 Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++ + +L A +L +T + Q+LD +FS+FC+GK Sbjct: 424 ELFSYHLLSAIENLNSLTRPYETSQMLDSMFSEFCLGK 461 >gi|15594524|ref|NP_212313.1| tRNA modification GTPase TrmE [Borrelia burgdorferi B31] gi|195941910|ref|ZP_03087292.1| tRNA modification GTPase TrmE [Borrelia burgdorferi 80a] gi|216264582|ref|ZP_03436574.1| tRNA modification GTPase TrmE [Borrelia burgdorferi 156a] gi|218249887|ref|YP_002374707.1| tRNA modification GTPase TrmE [Borrelia burgdorferi ZS7] gi|221217543|ref|ZP_03589013.1| tRNA modification GTPase TrmE [Borrelia burgdorferi 72a] gi|223889248|ref|ZP_03623836.1| tRNA modification GTPase TrmE [Borrelia burgdorferi 64b] gi|224532855|ref|ZP_03673470.1| tRNA modification GTPase TrmE [Borrelia burgdorferi WI91-23] gi|225548539|ref|ZP_03769587.1| tRNA modification GTPase TrmE [Borrelia burgdorferi 94a] gi|226320914|ref|ZP_03796465.1| tRNA modification GTPase TrmE [Borrelia burgdorferi 29805] gi|226321497|ref|ZP_03797023.1| tRNA modification GTPase TrmE [Borrelia burgdorferi Bol26] gi|3915895|sp|P53364|MNME_BORBU RecName: Full=tRNA modification GTPase mnmE gi|226704779|sp|B7J1B2|MNME_BORBZ RecName: Full=tRNA modification GTPase mnmE gi|2688058|gb|AAC66556.1| thiophene and furan oxidation protein (thdF) [Borrelia burgdorferi B31] gi|215981055|gb|EEC21862.1| tRNA modification GTPase TrmE [Borrelia burgdorferi 156a] gi|218165075|gb|ACK75136.1| tRNA modification GTPase TrmE [Borrelia burgdorferi ZS7] gi|221192606|gb|EEE18823.1| tRNA modification GTPase TrmE [Borrelia burgdorferi 72a] gi|223885281|gb|EEF56383.1| tRNA modification GTPase TrmE [Borrelia burgdorferi 64b] gi|224512244|gb|EEF82630.1| tRNA modification GTPase TrmE [Borrelia burgdorferi WI91-23] gi|225370802|gb|EEH00237.1| tRNA modification GTPase TrmE [Borrelia burgdorferi 94a] gi|226232686|gb|EEH31439.1| tRNA modification GTPase TrmE [Borrelia burgdorferi Bol26] gi|226233686|gb|EEH32416.1| tRNA modification GTPase TrmE [Borrelia burgdorferi 29805] gi|312149716|gb|ADQ29787.1| tRNA modification GTPase TrmE [Borrelia burgdorferi N40] Length = 464 Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 144/467 (30%), Positives = 242/467 (51%), Gaps = 43/467 (9%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASL--------RYFFGLD 57 + I A++T L SA+ +IR SG S I K K F ++L Y + LD Sbjct: 9 DDIVALATPFLSSALCVIRSSGASS------ISKFSKIFSNHSALNSASGNTIHYGYILD 62 Query: 58 ---GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114 G +D+ ++ ++ +P+SFTG+D+ E HG + + I++ K R+A PGEF+ Sbjct: 63 SENGCKVDEVVVCLYRAPKSFTGQDAIEVMAHGSVIGIKKIIDLFLK-SGFRMAEPGEFT 121 Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174 RAF KIDL +AE++ ++I ++T L++ +SG L + + S + Sbjct: 122 LRAFLAKKIDLTKAEAIHEIIFAKTNKTYSLAVNKLSGALFVKIDAIKKSILNFLSAVSV 181 Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234 LD+ +V + + IL K ++ I+ K+ E I NG +V+ G NAGKSS Sbjct: 182 YLDY----EVDDHEISIPFDLILSSKAELKKLINSYKVYEKIDNGVALVLAGSVNAGKSS 237 Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294 LFN KKD +IV+ PGTTRD + +L+G L + DTAG+R+ D+ VE+ GI+++ Sbjct: 238 LFNLFLKKDRSIVSSYPGTTRDYIEASFELDGILFNLFDTAGLRDADNFVERLGIEKSNS 297 Query: 295 EVENADLILLLKEINS---KKEISF----PKNIDFIFIGTKSDL-YSTYTEEYDH----- 341 ++ A L++ + +++S K + F N +F+ K DL + TEE+ Sbjct: 298 LIKEASLVIYVIDVSSNLTKDDFLFIDSNKSNSKILFVLNKIDLKINKSTEEFVRSKVLN 357 Query: 342 -----LISSFTGEGLEELINKIKSILSNKFKKLPFS--IPSHKRHLYHLSQTVRY-LEMA 393 +IS+ EG++ L +KI++++S + ++ I S R + L + L++ Sbjct: 358 SSNLIMISTKNLEGIDILYDKIRALISYERVEIGLDDIIISSNRQMQLLEKAYALILDLL 417 Query: 394 SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 S ++ D++A + LG+ITG V E +LD +F FC+GK Sbjct: 418 SKIDRQVSYDMLAFDAYEIINCLGEITGEVSSEDVLDNMFKNFCLGK 464 >gi|46121683|ref|XP_385396.1| hypothetical protein FG05220.1 [Gibberella zeae PH-1] Length = 436 Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 133/439 (30%), Positives = 204/439 (46%), Gaps = 82/439 (18%) Query: 78 EDSAEFHVHGGIAVVNGILEELAKMPN---LRLANPGEFSRRAFENGKIDLLEAESLADL 134 +D E HVHGG A V +L + K +R A PGEF++RAF N ++DL + ESL+D Sbjct: 4 DDVLELHVHGGSATVKAVLAAIPKCATAHRIRYAEPGEFTKRAFFNNRLDLAQIESLSDT 63 Query: 135 ISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNF--SSKEV 192 +++ETE QRR ++ G SG L Y W ++L R IEA +DFSE+ Q+F S E+ Sbjct: 64 LAAETEQQRRAAVRGNSGSLGRQYEAWREQLLLTRGEIEALIDFSED---QHFDESQAEL 120 Query: 193 LNDILF----LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVT 248 L ++ + + I H + E++RNG +I +LG N GKSSL N + ++ +IV+ Sbjct: 121 LQNVTAQVARMLHSIELHEQGSQRSELLRNGIRIALLGPPNVGKSSLMNLIVGREASIVS 180 Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD------------IVEKEGIKRTFLEV 296 GTTRD++ LD+ GYL +DTAG R VE+EGI+R Sbjct: 181 GEAGTTRDIVEASLDIRGYLCSFADTAGFRSQSSQITSEAESGAIGAVEEEGIRRAKQRA 240 Query: 297 ENADLILLLKEINSKKEISFPK-----------NIDFIFIGTKSDLYSTYTEEYDHLISS 345 +DL+++L + F + D + + K D E+ L+ Sbjct: 241 LESDLVIVLASVEKGPRGFFLQYDEETLDLAAGAEDCLVVVNKQDAVDKV--EFGKLVQK 298 Query: 346 F-------------------------TGEGLEELINKIKSILSN---KFKKLPFSIPSHK 377 F TG + I+++++ F+++ S+P Sbjct: 299 FRQNAQLRAPKLAAAELVSISCKEAQTGSWESKDPGGIQAVITRLVESFERMT-SMPVDL 357 Query: 378 RHLYHLSQTVRYL-------------EMASLNEKDCGLDIIAENLRLASVSLGKITG--- 421 + L +++ R L E D + AE LR A+ L +ITG Sbjct: 358 QDLLGVTERQRQLLIKCRQHLEDFMVEATPEEGMDADTVLAAEYLRYAADCLARITGRGE 417 Query: 422 CVDVEQLLDIIFSKFCIGK 440 DVE +L +IF KFC+GK Sbjct: 418 FGDVEDVLGVIFEKFCVGK 436 >gi|225549804|ref|ZP_03770768.1| tRNA modification GTPase TrmE [Borrelia burgdorferi 118a] gi|225369612|gb|EEG99061.1| tRNA modification GTPase TrmE [Borrelia burgdorferi 118a] Length = 464 Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 144/467 (30%), Positives = 242/467 (51%), Gaps = 43/467 (9%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASL--------RYFFGLD 57 + I A++T L SA+ +IR SG S I K K F ++L Y + LD Sbjct: 9 DDIVALATPFLSSALCVIRSSGASS------ISKFSKIFSNHSALNSASGNTIHYGYILD 62 Query: 58 ---GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114 G +D+ ++ ++ +P+SFTG+D+ E HG + + I++ K R+A PGEF+ Sbjct: 63 SENGCKVDEVVVCLYRAPKSFTGQDAIEVMAHGSVIGIKKIIDLFLK-SGFRMAEPGEFT 121 Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174 RAF KIDL +AE++ ++I ++T L++ +SG L + + S + Sbjct: 122 LRAFLAKKIDLTKAEAIHEIIFAKTNKTYSLAVNKLSGALFVKIDAIKKSILNFLSAVSV 181 Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234 LD+ +V + + IL K ++ I+ K+ E I NG +V+ G NAGKSS Sbjct: 182 YLDY----EVDDHEISIPFDLILSSKAELKKLINSYKVYEKIDNGVALVLAGSVNAGKSS 237 Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294 LFN KKD +IV+ PGTTRD + +L+G L + DTAG+R+ D+ VE+ GI+++ Sbjct: 238 LFNLFLKKDRSIVSSYPGTTRDYIEASFELDGILFNLFDTAGLRDADNFVERLGIEKSNS 297 Query: 295 EVENADLILLLKEINS---KKEISF----PKNIDFIFIGTKSDL-YSTYTEEYDH----- 341 ++ A L++ + +++S K + F N +F+ K DL + TEE+ Sbjct: 298 LIKEASLVIYVIDVSSNLTKDDFLFIDSNKSNSKILFVLNKIDLKINKSTEEFVRSKVLN 357 Query: 342 -----LISSFTGEGLEELINKIKSILSNKFKKLPFS--IPSHKRHLYHLSQTVRY-LEMA 393 +IS+ EG++ L +KI++++S + ++ I S R + L + L++ Sbjct: 358 SSNLIMISTKNLEGIDILYDKIRALISYERVEIGVDDIIISSSRQMQLLEKAYALILDLL 417 Query: 394 SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 S ++ D++A + LG+ITG V E +LD +F FC+GK Sbjct: 418 SKIDRQVSYDMLAFDAYEIINCLGEITGEVSSEDVLDNMFKNFCLGK 464 >gi|308185215|ref|YP_003929348.1| tRNA modification GTPase TrmE [Helicobacter pylori SJM180] gi|308061135|gb|ADO03031.1| tRNA modification GTPase TrmE [Helicobacter pylori SJM180] Length = 450 Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 148/462 (32%), Positives = 239/462 (51%), Gaps = 41/462 (8%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A++T AISII++SG + + + + +K+ PR A +R F +G +LDK L Sbjct: 3 DTIAAIATPLGKGAISIIKISGHNALNILKQLTQKQDFTPRYAYVRDIFS-NGVLLDKAL 61 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 +I F +P SFTGED E HG + IL+ + + RLA GEFS++AF N K+DL Sbjct: 62 VIYFKAPYSFTGEDVCEIQCHGSPLLAQHILQACLNLGS-RLAKAGEFSKKAFLNHKMDL 120 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 E E+ LI E E + GEL + + L + + E +D+SEE+ Sbjct: 121 SEIEASVQLILCEDESVLNALARQLKGELKIFIEEARNDLLKLLASSEVLIDYSEEDIPS 180 Query: 186 NFSSKEVLN---DILFLKNDISSHISQGKLGEIIRN-GYKIVILGHSNAGKSSLFNALAK 241 +F + LN I K+ + +Q + RN G+ + I+G NAGKSSL NA+ Sbjct: 181 DFLKEVSLNLEKQIASFKDLLDFSNAQKQ-----RNKGHALSIVGKPNAGKSSLLNAMLL 235 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 ++ A+V+DI GTTRD + ++L+G+ V++ DTAGIRE+ D +E+ GI+++ +EN D+ Sbjct: 236 EERALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRESADEIERLGIEKSLKSLENCDI 295 Query: 302 ILLLKEINSKKEISFPKNID--------FIFIGTKSDL--------YSTYTEEYDHLISS 345 IL + +++ E ID I + K+DL +Y + L+ + Sbjct: 296 ILGVFDLSKPLEKEDFNLIDALNRAKKPCIVVLNKNDLAPKLELEILKSYLKIPYSLLKT 355 Query: 346 FT---GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRY----LEMASLNEK 398 T L++L KI + F KL +K L L+QT +E+ + Sbjct: 356 NTLNSKACLKDLSQKISAF----FPKLD---TQNKLLLTSLAQTTALENAIIELQNAKSH 408 Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L++ + ++ A +L +T + Q+LD +FS+FC+GK Sbjct: 409 LDTLELFSYHILSAIENLNLLTRPYETSQMLDSMFSEFCLGK 450 >gi|315608192|ref|ZP_07883184.1| tRNA modification GTPase TrmE [Prevotella buccae ATCC 33574] gi|315250161|gb|EFU30158.1| tRNA modification GTPase TrmE [Prevotella buccae ATCC 33574] Length = 512 Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 110/344 (31%), Positives = 192/344 (55%), Gaps = 13/344 (3%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICK----KKKPFPRKASLRY--FFGLDGRI 60 TI A++T A AI ++R+SG ++ + I K +K + +L Y + Sbjct: 9 TICALATPA-GGAIGVVRVSGSEAIKIADHIFKAKSGRKLANAKGNTLHYGEIVNHNRET 67 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D + V+ +P S+TGED+ EF HG ++ +L L + R A PGE+++RA+ N Sbjct: 68 IDDVMASVYRAPFSYTGEDAVEFSCHGSQYILQEVLHLLIQN-GCRQAEPGEYTQRAYLN 126 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GK+DL +AE++ADLI+S ++++ + G S+ D+L + S +E +LDFS+ Sbjct: 127 GKMDLSQAEAVADLIASTNRATHKMAISQLKGHFSNELILLRDRLLKMTSLLELELDFSD 186 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E+++ K++L + I+S I + G ++NG + I+G +N GKS+L N L Sbjct: 187 HEELEFADRKQLLELACQIDEKITSLIQSFETGNALKNGIPVAIVGKTNVGKSTLLNRLL 246 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ AIV+DI GTTRD + + G + DTAGIR+T+D VE+ GI RT+ +++ A Sbjct: 247 HEERAIVSDIHGTTRDTIEDTTLINGVAFRFIDTAGIRKTEDEVERIGIDRTYQKIDQAT 306 Query: 301 LILLLKEINS---KKEISFPKNI--DFIFIGTKSDLYSTYTEEY 339 +++ + + + ++E K I + I + K D+ T++ Y Sbjct: 307 VVVWMIDTSPSALEQEDMRSKCIGKNVILVHNKVDIALTHSPSY 350 >gi|317181135|dbj|BAJ58921.1| tRNA modification GTPase TrmE [Helicobacter pylori F32] Length = 450 Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 141/454 (31%), Positives = 228/454 (50%), Gaps = 25/454 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A++T AIS+I++SG + + + + +K+ PR A +R F +G +LDK L Sbjct: 3 DTIAAIATPLGKGAISVIKISGNNALNILKQLTQKQDFTPRYAYVRDIFS-NGVLLDKAL 61 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 +I F +P SFTGED E HG + IL+ + RLA GEFS++AF N K+DL Sbjct: 62 VIYFKAPYSFTGEDVCEIQCHGNPLLAQNILQVCLNL-GARLAKAGEFSKKAFLNHKMDL 120 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 E E+ LI E E + GEL + L + + E +D+SEE+ Sbjct: 121 SEIEASVQLILCEDESVLNALARQLKGELKIFIEEARGNLLKLLASSEVLIDYSEEDIPS 180 Query: 186 NFSSKEVLNDILFLKNDISSH---ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 +F + LN L+ I+S + + + G+ + I+G NAGKSSL NA+ + Sbjct: 181 DFLDEVSLN----LEKQIASFKDLLDFSNMQKQKNKGHALSIVGKPNAGKSSLLNAMLLE 236 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 + A+V+DI GTTRD + ++L+G+ V++ DTAGIRE+ D +E+ GI+++ +EN D++ Sbjct: 237 ERALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRESADTIERLGIEKSLKSLENCDIV 296 Query: 303 LLLKEINSKKEISFPKNID--------FIFIGTKSDLYSTYTEEYDHLISSFTGEGLEEL 354 L + +++ E ID I + K+DL E LE Sbjct: 297 LGVFDLSKPLEQEDFNLIDTLNRAKKPCIVVLNKNDLAPKLELEILKSYLKIPYSLLETN 356 Query: 355 INKIKSILSNKFKKLPFSIP----SHKRHLYHLSQTVRY----LEMASLNEKDCGLDIIA 406 K+ L + +K+ P +K L L+Q E+ + L++ + Sbjct: 357 TLNSKACLKDLSQKISAFFPKLDTQNKLLLTSLAQKTALENAIFELQNAKNHLETLELFS 416 Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +L A +L +T + Q+LD +FS+FC+GK Sbjct: 417 YHLLSAIENLNSLTRPYETSQMLDSMFSEFCLGK 450 >gi|257462448|ref|ZP_05626861.1| tRNA modification GTPase TrmE [Fusobacterium sp. D12] Length = 404 Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 132/399 (33%), Positives = 225/399 (56%), Gaps = 22/399 (5%) Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFE 119 I+D+ L+ + +P ++T ED E + HGG + ILE L RLA GEF+RRAF Sbjct: 10 IVDEVLVSIMKAPNTYTREDIVEINCHGGYLITEKILE-LVLSSGARLAEVGEFTRRAFF 68 Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 +G+IDL +AE++ D+I +TE +S+ + G+L + ++ + I LD+ Sbjct: 69 HGRIDLTQAEAVMDIIHGKTEKSLSVSINQLRGDLKEKIISLKKAILNLAAHINVVLDYP 128 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 EE ++ + +LN++ + +I IS + G++I+ G K VI+G N GKSSL N++ Sbjct: 129 EEG-IEEPIPENLLNNLRKVSIEIQELISSYQKGKMIKEGVKTVIIGKPNVGKSSLLNSI 187 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 +++ AIVT + GTTRDV+ ++++G + + DTAGIR+T D VE G+ ++ ++ A Sbjct: 188 LREERAIVTQVAGTTRDVIEEVINIKGIPLILVDTAGIRDTTDFVENIGVMKSKEFLQKA 247 Query: 300 DLILLLKEIN---SKKE----ISFPKNIDFIFIGTKSDL-----YSTYTEEYDHL-ISSF 346 DL+L + + + SK++ IS +N I I K+DL S+ ++ + + +S+ Sbjct: 248 DLVLFVLDASQELSKEDREIYISLQENQKVIGILNKTDLEKKIQVSSLSKIKNWIEVSAM 307 Query: 347 TGEGLEELINKI-KSILSNKF----KKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG 401 G+EE+ KI + IL K +KL + HK L + ++ + S E+ Sbjct: 308 KCIGIEEMEEKIYQYILQEKVEENSQKLILTNIRHKAALEKTNGAIK--NIFSTVEQGLP 365 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D++A +++ A SL +ITG + E +LD IF FC+GK Sbjct: 366 MDLMAVDIKEALDSLSEITGEISTEDVLDHIFHNFCVGK 404 >gi|302781180|ref|XP_002972364.1| hypothetical protein SELMODRAFT_97275 [Selaginella moellendorffii] gi|300159831|gb|EFJ26450.1| hypothetical protein SELMODRAFT_97275 [Selaginella moellendorffii] Length = 469 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 141/485 (29%), Positives = 235/485 (48%), Gaps = 67/485 (13%) Query: 6 ETIFAVSTGAL--PSAISIIRLSGPSCFQVCEFI---CKKKKPFPRKASLRYFFGL---- 56 ETI A+ T A++I+R+SGPS V + I +KKK P+ S R +G Sbjct: 2 ETIAAIVTPLCGKQGAVAIVRMSGPSAVSVAQAIFRPLRKKKWIPQ--SHRVVYGTIIEY 59 Query: 57 -DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 I+D+ +++ +P S+T ED E HGG V IL+ L RLA PGEF+ Sbjct: 60 PKETIIDEVIIVPMLAPRSYTREDVVEIQCHGGDVCVRRILD-LCLQHGARLAQPGEFTL 118 Query: 116 RAFENGKIDLLEAESLADLISSETE---------MQRRLSMEGMSGELSSLYGQWIDKLT 166 RAF NG+IDL +AE++A L+S++T +Q R G+S + S+ Q I+ L Sbjct: 119 RAFLNGRIDLSQAENVAQLVSAKTASAAETALAGLQARKIFGGLSNFVRSMRSQCIELLA 178 Query: 167 HIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILG 226 I +A +DF E+++ +++ + + + + G ++++G ++ I+G Sbjct: 179 EI----DAHVDF--EDELAPLDVDKIMEAVGSVSAQVEQALETAARGRLLQSGIQVAIVG 232 Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEK 286 N GKSSL N ++ + AIVTD+ GTTRD++ D+ + G V++ DTAGIR T+D VE Sbjct: 233 RPNVGKSSLLNGWSQSERAIVTDVAGTTRDIVEADVVVSGVPVRLLDTAGIRITEDPVES 292 Query: 287 -EGIKRTFLEVENADL----------------------------ILLLKEINS--KKEIS 315 G++R+ AD+ IL++ +I+ + +++ Sbjct: 293 IAGVQRSQAAATGADVLVMVINACDGWTTGDKLIFDHTLQQQPWILVMNKIDQVCEGDVT 352 Query: 316 FPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375 P+++ F S + D L ++ LI + S + + Sbjct: 353 IPEDVRAAFSAVVSTCAVKEALDIDKLDTALA-----ALIAAGGDVFSAGQQHWAVN-ER 406 Query: 376 HKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSK 435 K L Q + L ++ E +D+ +LR ++LG+I+G E++L IFS+ Sbjct: 407 QKEQLIRAKQALERLRQSAHEE--LPVDLWTVDLRDTILALGQISGDDVSEEVLANIFSR 464 Query: 436 FCIGK 440 FCIGK Sbjct: 465 FCIGK 469 >gi|308064209|gb|ADO06096.1| tRNA modification GTPase TrmE [Helicobacter pylori Sat464] Length = 450 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 143/454 (31%), Positives = 227/454 (50%), Gaps = 25/454 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A++T AIS+I++SG + + + + +K+ PR A +R F +G +LDK L Sbjct: 3 DTIAAIATPLGKGAISVIKISGNNALNILKQLTQKQDFTPRYAYVRDIFS-NGVLLDKAL 61 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 +I F +P SFTGED E HG + IL+ + RLA GEFS++AF N K+DL Sbjct: 62 VIYFKAPYSFTGEDVCEIQCHGNPLLAQNILQACLNL-GARLAKAGEFSKKAFLNHKMDL 120 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 E E+ LI E E + GEL + L + + E +D+SEE+ Sbjct: 121 SEIEASVQLILCEDESVLNALARQLKGELKIFIEEARGNLLKLLASSEVLIDYSEEDIPS 180 Query: 186 NFSSKEVLNDILFLKNDISSH---ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 +F + LN L+ I+S + + + G+ + I+G NAGKSSL NA+ + Sbjct: 181 DFLDEVSLN----LEKQIASFKDLLDFSNMQKQKNKGHALSIVGKPNAGKSSLLNAMLLE 236 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 + A+V+DI GTTRD + ++L+G+ V++ DTAGIRE+ D +E+ GI+++ +EN D+I Sbjct: 237 ERALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRESADKIERLGIEKSLKSLENCDII 296 Query: 303 LLLKEINSKKEISFPKNID--------FIFIGTKSDLYSTYTEEYDHLISSFTGEGLEEL 354 L + +++ E ID I + K+DL E LE Sbjct: 297 LGVFDLSKPLEKEDFNLIDTLNRAKKPCIVVLNKNDLAPKLELEILKSYLKIPYSLLETN 356 Query: 355 INKIKSILSNKFKKLPFSIP----SHKRHLYHLSQTVRY----LEMASLNEKDCGLDIIA 406 K+ L + +K+ P +K L L+Q E+ + L+ + Sbjct: 357 TLNSKACLKDLSQKISAFFPKLDTQNKLLLTSLAQKTALENAIFELQNAKNHLETLEFFS 416 Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +L A SL +T + Q+LD +FS+FC+GK Sbjct: 417 YHLLSAIESLNLLTRPYETSQMLDSMFSEFCLGK 450 >gi|332674218|gb|AEE71035.1| tRNA modification GTPase TrmE [Helicobacter pylori 83] Length = 450 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 146/456 (32%), Positives = 233/456 (51%), Gaps = 29/456 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A++T AIS+I++SG + + + + +K+ PR A +R F +G +LDK L Sbjct: 3 DTIAAIATPLGKGAISVIKISGNNALNILKQLTQKQDFTPRYAYVRDIFS-NGVLLDKAL 61 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 +I F +P SFTGED E HG + IL+ + RLA GEFS++AF N K+DL Sbjct: 62 VIYFKAPYSFTGEDVCEIQCHGNPLLAQNILQACLNL-GARLAKAGEFSKKAFLNHKMDL 120 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 E E+ LI E E + GEL + L + + E +D+SEE+ Sbjct: 121 SEIEASVQLILCEDESALNALARQLKGELKIFIEEARGNLLKLLASSEVLIDYSEEDIPS 180 Query: 186 NFSSKEVLNDILF-LKNDISSH---ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 +F L+++ F L+ I+S + + + G+ + I+G NAGKSSL NA+ Sbjct: 181 DF-----LDEVSFNLEKQIASFKDLLDFSNMQKQKNKGHALSIVGKPNAGKSSLLNAMLL 235 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 ++ A+V+DI GTTRD + ++L+G+ V++ DTAGIRE+ D +E+ GI+++ +EN D+ Sbjct: 236 EERALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRESADKIERLGIEKSLKSLENCDI 295 Query: 302 ILLLKEINSKKEISFPKNID--------FIFIGTKSDLYSTYTEEYDHLISSFTGEGLEE 353 +L + +++ E ID I + K+DL E LE Sbjct: 296 VLGVFDLSKPLEKEDFNLIDTLNRAKKPCIVVLNKNDLVPKLELEILKSYLKIPYSLLET 355 Query: 354 LINKIKSILSNKFKKLPFSIP----SHKRHLYHLSQTVRYLEMASL---NEKDC--GLDI 404 K+ L + +K+ P +K L L+Q LE A N KD L++ Sbjct: 356 NTLNSKACLKDLSQKISAFFPKLDTQNKLLLTSLAQKTA-LENAIFELQNAKDHLETLEL 414 Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + +L A +L +T + Q+LD +FS+FC+GK Sbjct: 415 FSYHLLSAIENLNLLTRPYETSQMLDSMFSEFCLGK 450 >gi|308062715|gb|ADO04603.1| tRNA modification GTPase TrmE [Helicobacter pylori Cuz20] Length = 450 Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 143/456 (31%), Positives = 228/456 (50%), Gaps = 29/456 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A++T + AIS+I++SG + + + + +K+ PR A +R F +G +LDK L Sbjct: 3 DTIAAIATPSGKGAISVIKISGNNALNILKQLTQKQDFTPRYAYVRDIFS-NGVLLDKAL 61 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 +I F +P SFTGED E HG + IL+ + RLA GEFS++AF N K+DL Sbjct: 62 VIYFKAPYSFTGEDVCEIQCHGNPLLAQNILQACLNL-GARLAKAGEFSKKAFLNHKMDL 120 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 E E+ LI E E + GEL + L + + E +D+SEE+ Sbjct: 121 SEIEASVQLILCEDESVLNALARQLKGELKIFIEEARGNLLKLLASSEVLIDYSEEDIPN 180 Query: 186 NF---SSKEVLNDILFLKN--DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 +F S+ + I K+ D S+ Q G+ + I+G NAGKSSL NA+ Sbjct: 181 DFLDEVSQNLEKQIASFKDLLDFSNMQKQK------NKGHALSIVGKPNAGKSSLLNAML 234 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ A+V+DI GTTRD + ++L+G+ V++ DTAGIRE+ D +E+ GI+++ +EN D Sbjct: 235 LEERALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRESTDKIERLGIEKSLKSLENCD 294 Query: 301 LILLLKEINSKKEISFPKNID--------FIFIGTKSDLYSTYTEEYDHLISSFTGEGLE 352 ++L + +++ E ID I + K+DL E LE Sbjct: 295 IVLGVFDLSKPLEKEDFNLIDTLNRAKKPCIVVLNKNDLAPKLELETLKSYLKIPYSLLE 354 Query: 353 ELINKIKSILSNKFKKLPFSIP----SHKRHLYHLSQTVRY----LEMASLNEKDCGLDI 404 K+ L + +K+ P +K L L+Q E+ + L++ Sbjct: 355 TNTLNSKACLKDLSQKISAFFPKLDTQNKLLLTSLAQKTALENAIFELQNAKNHLETLEL 414 Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + +L A SL +T + Q+LD +FS+FC+GK Sbjct: 415 FSYHLLSAIESLNLLTRPYETSQMLDSMFSEFCLGK 450 >gi|262038122|ref|ZP_06011523.1| tRNA modification GTPase TrmE [Leptotrichia goodfellowii F0264] gi|261747846|gb|EEY35284.1| tRNA modification GTPase TrmE [Leptotrichia goodfellowii F0264] Length = 455 Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 153/463 (33%), Positives = 247/463 (53%), Gaps = 39/463 (8%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRILD 62 +TI A+ST I IIR+SG F++ I K P ++ +G +G+I+D Sbjct: 4 DTIAAISTPKGEGGIGIIRISGDKSFEILSKIFNMKNPNKDLGFYKFNYGFVHDNGKIID 63 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 + + + +P+++T ED E + HGG + +LE + K R A GEF++RAF NG+ Sbjct: 64 EVMTVRMKAPKTYTCEDIVEINCHGGNLITEKVLELVLK-NGARHAEQGEFTKRAFMNGR 122 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE- 181 IDL +AE++ DLI +TE LSM+ + G+L ++ L + + + LD+ EE Sbjct: 123 IDLSQAEAVMDLIQGKTEKSISLSMDQLRGDLKEKINKFKKALLDVTAHVNVVLDYPEEG 182 Query: 182 -EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 +D + +E L + N + I G+ I+ G K VI+G N GKS+L N+L Sbjct: 183 IDDPLPENLRENLEKVYKEANIL---IESYDKGKKIKEGIKTVIVGKPNVGKSTLLNSLL 239 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 K++ AIVT IPGTTRD++ ++++G + + DTAGIR+T+DIVE G++++ +E AD Sbjct: 240 KEERAIVTHIPGTTRDIIEEIINIKGIPLVLVDTAGIRKTEDIVENIGVEKSKQFIEKAD 299 Query: 301 LILLLKEINSKKEISFPKNIDFI-----------FIGTKSDL-----YSTYTEEYDHLIS 344 LILL+ +++ KE+ ++I+ I + K DL S Y E IS Sbjct: 300 LILLV--LDASKELE-KEDIEVIEKIKKNNKKTIVLLNKIDLERKIDLSNYDLENILEIS 356 Query: 345 SFTGEGLEELINKIKSIL-----SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399 + G++E+ KI S + N +KL + HK L + V + D Sbjct: 357 AKDNIGIDEMEEKIYSYIVEEDVENTSEKLIITNIRHKTALEKTKEAVNNI----FETID 412 Query: 400 CG--LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G +D+I+ +L+ A +L +ITG + E +LD +F FC+GK Sbjct: 413 NGMPMDLISVDLKEALDALSEITGEISSEDILDHVFGNFCVGK 455 >gi|308273513|emb|CBX30115.1| tRNA modification GTPase mnmE [uncultured Desulfobacterium sp.] Length = 460 Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 149/463 (32%), Positives = 234/463 (50%), Gaps = 30/463 (6%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKP-----FPRKASLRYFFGLD- 57 +K+TI A+ST I II++SG + I +K K F L + +D Sbjct: 2 DKDTIAAISTPVGSGGIGIIKISGDKAKHITSLIFRKSKKNEVNYFKESHKLYHGHIIDP 61 Query: 58 --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 +ILD+ L+ V +P S+TGED E +VH G ++ IL + + + RLA PGEF++ Sbjct: 62 DSNQILDEVLVSVMLAPHSYTGEDVIEINVHSGTFILKTILNIIIR-KDARLAEPGEFTK 120 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG+IDL +AE++ D+I+S + ++ + G L + + L I IEA Sbjct: 121 RAFLNGRIDLTQAEAIIDIINSNSLKALEIANAQVDGVLRNEIESMLTVLNDIIVKIEAV 180 Query: 176 LDFSEEEDVQNFSSK-EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234 +DF +E + N VL + + +K ++ IS G +IR G K+VI G N GKSS Sbjct: 181 IDFPDETENINIDEYISVLENSIIIK--LNKLISDYNEGHVIREGLKVVIAGRPNVGKSS 238 Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294 L N L KK+ +IVT IPGTTRD++ + + G I DTAG T D VE+ GI++ Sbjct: 239 LMNVLLKKERSIVTSIPGTTRDIIDETIIISGIPAVIFDTAGFHNTVDPVEEIGIQKALE 298 Query: 295 EVENADLILLLKEI------NSKKEISFPKNIDFIFIGTKSDLY--STYTEEYDHL---- 342 + N+D+IL + ++ + + + K+ + I + K DL ++ E L Sbjct: 299 IINNSDIILFMLDVINPFTEDDRTLLEIVKDKELIVVLNKIDLLNENSLIEINKELKCFP 358 Query: 343 ---ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399 +SS G++ L IK I + I + R + ++ ++ + LN Sbjct: 359 IVRVSSLCNTGIDVLKETIKEITTKSVHSDCSCIVPNLRQKTAIENCLKNMK-SFLNGIK 417 Query: 400 CGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 GL + I+ ++ A L +I G +LD IF+KFCIGK Sbjct: 418 AGLPYEFISLDIHEAITELSQIVGIKIKLNILDQIFNKFCIGK 460 >gi|297380695|gb|ADI35582.1| tRNA modification GTPase TrmE [Helicobacter pylori v225d] Length = 461 Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 142/454 (31%), Positives = 227/454 (50%), Gaps = 25/454 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A++T AIS+I++SG + + + + +K+ PR A +R F +G +LDK L Sbjct: 14 DTIAAIATPLGKGAISVIKISGNNALNILKQLTQKQDFTPRYAYVRDIFS-NGVLLDKAL 72 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 +I F +P SFTGED E HG + IL+ + RLA GEFS++AF N K+DL Sbjct: 73 VIYFKAPYSFTGEDVCEIQCHGNPLLAQNILQACLNL-GARLAKAGEFSKKAFLNHKMDL 131 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 E E+ LI E E + GEL + L + + E +D+SEE+ Sbjct: 132 SEIEASVQLILCEDESVLNALARQLKGELKIFIEEARGNLLKLLASSEVLIDYSEEDIPS 191 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRN---GYKIVILGHSNAGKSSLFNALAKK 242 +F ++ LN L+ I+S R G+ + I+G NAGKSSL NA+ + Sbjct: 192 DFLNEVSLN----LEKQIASFKDLLDFSNTQRQKNKGHALSIVGKPNAGKSSLLNAMLLE 247 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 + A+V+DI GTTRD + ++L+G+ V++ DTAGIRE+ D +E+ GI+++ +EN D++ Sbjct: 248 ERALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRESADKIERLGIEKSLKSLENCDIV 307 Query: 303 LLLKEINSKKEISFPKNID--------FIFIGTKSDLYSTYTEEYDHLISSFTGEGLEEL 354 L + +++ E ID I + K+DL E LE Sbjct: 308 LGVFDLSKPLEKEDFNLIDALNRAKKPCIVVLNKNDLAPKLELEILKSYLKIPYSLLETN 367 Query: 355 INKIKSILSNKFKKLPFSIP----SHKRHLYHLSQTVRY----LEMASLNEKDCGLDIIA 406 K+ L + +K+ P +K L L+Q E+ + L++ + Sbjct: 368 TLNSKACLKDLSQKISAFFPKLDTQNKLLLTSLAQKTALENAIFELQNAKNHLETLELFS 427 Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +L A +L +T + Q+LD +FS+FC+GK Sbjct: 428 YHLLSAIENLNLLTRPYETSQMLDSMFSEFCLGK 461 >gi|225016766|ref|ZP_03705958.1| hypothetical protein CLOSTMETH_00678 [Clostridium methylpentosum DSM 5476] gi|224950434|gb|EEG31643.1| hypothetical protein CLOSTMETH_00678 [Clostridium methylpentosum DSM 5476] Length = 454 Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 144/465 (30%), Positives = 239/465 (51%), Gaps = 44/465 (9%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGL---DGRIL 61 TI A++T IS+IRLSG ++ + F KP + R +G + Sbjct: 3 TIAAIATPHAVGGISVIRLSGDKAIEIAQKIFHPLSGKPLQKMDGYRAAYGTINNQAGEI 62 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121 D G+ +VF +P+S+TGED E HGG+ + +L A ++A GEF++RAF N Sbjct: 63 DDGVALVFHAPKSYTGEDVVEISCHGGLYISRQVLRA-ALEAGAKMAENGEFTKRAFLNK 121 Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181 K+ L +AES+ +LI++++E + ++ M G L + D+L I ++A +D+ EE Sbjct: 122 KMTLTQAESVINLINAQSEQAAKSALTTMGGALYKEIRRICDRLITIAGHLDAWVDYPEE 181 Query: 182 EDVQNFSSKEVLNDILFLKNDISSH------ISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 E + + LK SH +S+ G I + G + I+G N GKS+L Sbjct: 182 EIEEIEADS-------LLKQLKESHQALVGLLSRYDTGRIYQQGVETAIVGKPNVGKSTL 234 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV-KISDTAGIRETDDIVEKEGIKRTFL 294 N LA +IVT+I GTTRDV+ +D+ G ++ +++DTAGIRET+D+VE+ G+ R Sbjct: 235 MNLLAGYQKSIVTEIAGTTRDVVEEAVDIGGGIILRLADTAGIRETEDLVERIGVDRAKE 294 Query: 295 EVENADLILLL---KEINSKKEISFPKNID---FIFIGTKSDLYSTYTEEYDHL------ 342 +++A L+L L E +++ SF + + I + KSDL + + D L Sbjct: 295 RIQSASLVLALFDSSEPVEEQDASFIEQLSGFPVIAVVNKSDLPARI--DLDLLKKKFRW 352 Query: 343 ---ISSFTGEGLEELINKIKSILSNKFKKLPFSIP--SHKRHLYHLSQTVRYLEMASLNE 397 IS+ EG+E+L I +L + +++ + P +++R YL A ++ Sbjct: 353 VVSISAKQNEGIEQLKESIFDLL--QMEEIDGNAPMLANERQRVCAQNAENYLGEA-IDA 409 Query: 398 KDCG--LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G LD + ++ A L ++TG E ++D +FS FC+GK Sbjct: 410 LKVGFTLDAVTVSVESAIQELLELTGERVTEAVVDEVFSHFCVGK 454 >gi|261838727|gb|ACX98493.1| thiophene/furan oxidation protein [Helicobacter pylori 51] Length = 461 Score = 170 bits (431), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 145/455 (31%), Positives = 231/455 (50%), Gaps = 27/455 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A++T AIS+I++SG + + + + +K+ PR A + F +G +LDK L Sbjct: 14 DTIAAIATPLGKGAISVIKISGNNALNILKQLTQKQDFTPRYAYVHDIFS-NGVLLDKAL 72 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 +I F +P SFTGED E HG + IL+ + RLA GEFS++AF N K+DL Sbjct: 73 VIYFKAPYSFTGEDVCEIQCHGNPLLAQNILQTCLNL-GARLAKAGEFSKKAFLNHKMDL 131 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 E E+ LI E E + GEL + D L + + E +D+SEE+ Sbjct: 132 SEIEASVQLILCEDESVLNALARQLKGELKIFIEEARDNLLKLLASSEVLIDYSEEDIPS 191 Query: 186 NFSSKEVLNDILFLKNDISSH---ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 +F + L+ L+ I+S + + + G+ + I+G NAGKSSL NA+ + Sbjct: 192 DFLDEVSLD----LEKQIASFKDLLDFSNMQKQKNKGHALSIVGKPNAGKSSLLNAMLLE 247 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 + A+V+DI GTTRD + ++L+G+ V++ DTAGIRE+ D +E+ GI+++ +EN D++ Sbjct: 248 ERALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRESADKIERLGIEKSLKSLENCDIV 307 Query: 303 LLLKEINSKKEISFPKNID--------FIFIGTKSDLYSTYTEEYDHLISSFTGEGLEEL 354 L + +++ E ID I + K+DL E LE Sbjct: 308 LGVFDLSKPLEQEDFNLIDTLNRAKKPCIVVLNKNDLAPKLELETLKSYLKIPYSLLETN 367 Query: 355 INKIKSILSNKFKKLPFSIP----SHKRHLYHLSQTVRYLEMASL---NEKDC--GLDII 405 K+ L + +K+ P +K L L+Q LE A N KD L++ Sbjct: 368 TLNSKACLKDLSQKISAFFPKLDTQNKLLLTSLAQKTA-LENAIFELQNAKDHLETLELF 426 Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + +L A +L +T + Q+LD +FS+FC+GK Sbjct: 427 SYHLLSAIENLNSLTRPYETSQMLDSMFSEFCLGK 461 >gi|312148439|gb|ADQ31098.1| tRNA modification GTPase TrmE [Borrelia burgdorferi JD1] Length = 464 Score = 170 bits (431), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 143/467 (30%), Positives = 241/467 (51%), Gaps = 43/467 (9%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASL--------RYFFGLD 57 + I A++T L SA+ +IR SG S I K K F ++L Y + LD Sbjct: 9 DDIVALATPFLSSALCVIRSSGASS------ISKFSKIFSNHSALNSASGNTIHYGYILD 62 Query: 58 GR---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114 +D+ ++ ++ +P+SFTG+D+ E HG + + I++ K R+A PGEF+ Sbjct: 63 NENDCKVDEVVVCLYRAPKSFTGQDTIEVMAHGSVIGIKKIIDLFLK-SGFRMAEPGEFT 121 Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174 RAF KIDL +AE++ ++I ++T L++ +SG L + + S + Sbjct: 122 LRAFLAKKIDLTKAEAIHEIIFAKTNKTYSLAVNKLSGALFVKIDAIKKSILNFLSAVSV 181 Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234 LD+ +V + + IL K ++ I+ K+ E I NG +V+ G NAGKSS Sbjct: 182 YLDY----EVDDHEISIPFDLILSSKAELKKLINSYKVYEKIDNGVALVLAGSVNAGKSS 237 Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294 LFN KKD +IV+ PGTTRD + +L+G L + DTAG+R+ D+ VE+ GI+++ Sbjct: 238 LFNLFLKKDRSIVSSYPGTTRDYIEASFELDGILFNLFDTAGLRDADNFVERLGIEKSNS 297 Query: 295 EVENADLILLLKEINS---KKEISF----PKNIDFIFIGTKSDL-YSTYTEEYDH----- 341 ++ A L++ + +++S K + F N +F+ K DL + TEE+ Sbjct: 298 LIKEASLVIYVIDVSSNLTKDDFLFIDSNKSNSKILFVLNKIDLKINKSTEEFVRSKVLN 357 Query: 342 -----LISSFTGEGLEELINKIKSILSNKFKKLPFS--IPSHKRHLYHLSQTVRY-LEMA 393 +IS+ EG++ L +KI++++S + ++ I S R + L + L++ Sbjct: 358 SSNLIMISTKNLEGIDILYDKIRALISYERVEIGLDDIIISSSRQMQLLEKAYALILDLL 417 Query: 394 SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 S ++ D++A + LG+ITG V E +LD +F FC+GK Sbjct: 418 SKIDRQVSYDMLAFDAYEIINCLGEITGEVSSEDVLDNMFKNFCLGK 464 >gi|302780125|ref|XP_002971837.1| hypothetical protein SELMODRAFT_96586 [Selaginella moellendorffii] gi|300160136|gb|EFJ26754.1| hypothetical protein SELMODRAFT_96586 [Selaginella moellendorffii] Length = 469 Score = 170 bits (431), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 139/480 (28%), Positives = 237/480 (49%), Gaps = 57/480 (11%) Query: 6 ETIFAVSTGAL--PSAISIIRLSGPSCFQVCEFI---CKKKKPFPRKASLRYFFGLD--- 57 ETI A+ T A++I+R+SGPS V + I +KKK P+ + Y ++ Sbjct: 2 ETIAAIVTPLCGKQGAVAIVRMSGPSAVSVAQAIFRPLRKKKWIPQSHKVVYGTIIEYPK 61 Query: 58 GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 I+D+ +++ +P S+T ED E HGG V IL+ L RLA PGEF+ RA Sbjct: 62 ETIIDEVIIVPMLAPRSYTREDVVEIQCHGGDVCVRRILD-LCLQHGARLAQPGEFTLRA 120 Query: 118 FENGKIDLLEAESLADLISSETE---------MQRRLSMEGMSGELSSLYGQWIDKLTHI 168 F NG+IDL +AE++A L+S++T +Q R G+S + S+ Q I+ L I Sbjct: 121 FLNGRIDLSQAENVAQLVSAKTASAAETALAGLQARKIFGGLSNFVRSMRSQCIELLAEI 180 Query: 169 RSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHS 228 +A +DF E+++ +++ + + + + G ++++G ++ I+G Sbjct: 181 ----DAHVDF--EDELAPLDVDKIMEAVGSVSAQVEQALETAARGRLLQSGIQVAIVGRP 234 Query: 229 NAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEK-E 287 N GKSSL N ++ + AIVTD+ GTTRD++ D+ + G V++ DTAGIR T+D VE Sbjct: 235 NVGKSSLLNGWSQSERAIVTDVAGTTRDIVEADVVVSGVPVRLLDTAGIRITEDPVESIA 294 Query: 288 GIKRTFLEVENADLILLL----------------KEINSKKEISFPKNIDFIFIGTKSDL 331 G++R+ AD+++++ + K I ID + G + Sbjct: 295 GVQRSQAAATGADVLVMVINACDGWTTGDKLIFDHTLQQKPWILVMNKIDQV-CGGDVTI 353 Query: 332 YSTYTEEYDHLISSFT-GEGLEELINKIKSILSNKFKKLPFSIPSHKRH----------L 380 + ++S+ E L+ I+K+ + L+ + ++H L Sbjct: 354 PEDVRAAFSAVVSTCAVKEALD--IDKLDTALAALIAAGGDVFSAGQQHWAVNERQKEQL 411 Query: 381 YHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 Q + L ++ E +D+ +LR ++LG+I+G E++L IFS+FCIGK Sbjct: 412 IRAKQALERLRQSAHEE--LPVDLWTVDLRDTILALGQISGDDVSEEVLANIFSRFCIGK 469 >gi|30468066|ref|NP_848953.1| tRNA modification GTPase [Cyanidioschyzon merolae strain 10D] gi|75272287|sp|Q85FG3|MNME_CYAME RecName: Full=Probable tRNA modification GTPase mnmE gi|30409166|dbj|BAC76115.1| tRNA modification GTPase [Cyanidioschyzon merolae strain 10D] Length = 446 Score = 170 bits (430), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 135/455 (29%), Positives = 230/455 (50%), Gaps = 36/455 (7%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD-GRILDK 63 ++TI A++T PS+++IIRLSG ++ + IC KK + + + D +++D+ Sbjct: 9 QDTIVAIATYLAPSSVAIIRLSGNEAIRLAKSICVKKNHWHSHRIIHTYVQDDQNQLIDE 68 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 L++ +P S+T +D E H HGG+ V IL+ L RLA PGEF+ RAF NG++ Sbjct: 69 VLVLPMLAPRSYTRQDVVEIHAHGGVVVAQTILQLLINR-GARLAKPGEFTLRAFINGRL 127 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 L +AES+ +LI + + + ++ + G LS+ Q +L + + IEA LDF D Sbjct: 128 TLTQAESVLELIHAPSVAMAKKALSNLRGALSTQLHQVRSELIQLLAQIEAHLDF----D 183 Query: 184 VQN-FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 + N F +N + + N I + ++ + R G ++ +LG +NAGKS+LFNAL + Sbjct: 184 LDNTFVFNSFINSLTNIINQIQNLLNTP--SKFYRYGIQVALLGPANAGKSTLFNALIGE 241 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 + +IVT I GTT DV+ L + + DTAG++E +E + + + + DLI Sbjct: 242 ERSIVTPIAGTTTDVVEATLQWQQICFRFFDTAGLKEASSEIETKAMAKAQQIAKQCDLI 301 Query: 303 LLLKEINSKKEISFPKNI----DFIFIGTKSDLYSTYTEEY--DHL------ISSFTGEG 350 L + + S + P + + + K D+ S+ ++ DH +S+ Sbjct: 302 LWIIDATSPN-LPIPPYLLNSKPLLVVYNKIDVDSSDVLDHVLDHTSYPTVKVSALYATN 360 Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGLDIIAENL 409 L +L I + F+ I + L L Q ++L + S ++ L+II+ +L Sbjct: 361 LSQLKQLIWQQATQLFQLDGIYINERQSQL--LQQAKQHLCNLQSALDEGYPLEIISWHL 418 Query: 410 RLASVSLGKITGCVDVEQL----LDIIFSKFCIGK 440 + A C+D + L+ IFS+FCIGK Sbjct: 419 KNA-------IQCLDENDVNASTLNAIFSQFCIGK 446 >gi|307638103|gb|ADN80553.1| GTPase and tRNA-U345-formylation enzyme [Helicobacter pylori 908] gi|325996704|gb|ADZ52109.1| tRNA modification GTPase [Helicobacter pylori 2018] gi|325998296|gb|ADZ50504.1| tRNA modification GTPase [Helicobacter pylori 2017] Length = 450 Score = 169 bits (429), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 145/455 (31%), Positives = 233/455 (51%), Gaps = 27/455 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A++T AISII++SG + + + + +K+ PR A + F DG +LDK L Sbjct: 3 DTIAAIATPLGKGAISIIKISGHNALNILKQLTQKQDFTPRYAYVCDIFS-DGVLLDKAL 61 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 +I F +P SFTGED E HG + IL+ + RLA GEFS++AF N K+DL Sbjct: 62 VIYFKAPYSFTGEDVCEVQCHGSPLLAQNILQACLNL-GARLAKAGEFSKKAFLNHKMDL 120 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 E E+ LI E E + GEL + + L + + E +D+SEE+ Sbjct: 121 SEIEASVQLILCEDESVLNALARQLKGELKIFIEEARNNLLKLLASSEVLIDYSEEDIPS 180 Query: 186 NFSSKEVLNDILF-LKNDISS--HISQGKLGEIIRN-GYKIVILGHSNAGKSSLFNALAK 241 +F L+++ F L+ I+S + + RN G+ + I+G NAGKSSL NA+ Sbjct: 181 DF-----LDEVSFNLEKQIASFKDLLDFSNAQKQRNKGHALSIVGKPNAGKSSLLNAMLL 235 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 ++ A+V+DI GTTRD + ++L+G+ V++ DTAGIRE+ D +E+ GI+++ +EN D+ Sbjct: 236 EERALVSDIKGTTRDTIEEVIELKGHKVRLIDTAGIRESADEIERLGIEKSLKSLENCDI 295 Query: 302 ILLLKEINSKKEISFPKNID--------FIFIGTKSDLYSTYTEEYDHLISSFTGEGLEE 353 IL + +++ E ID I + K+DL E LE Sbjct: 296 ILGVFDLSKPLEKEDFNLIDTLNRAKKPCIVVLNKNDLAPKLELEILKSYLKIPYSTLET 355 Query: 354 LINKIKSILSNKFKKLPFSIP----SHKRHLYHLSQTVRY----LEMASLNEKDCGLDII 405 K+ L + +K+ P +K L L+QT +E+ + L++ Sbjct: 356 NTLNSKACLKDLSQKISEFFPKLDTQNKLLLTSLAQTTALENAIIELQNAKSHLDTLELF 415 Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + ++ A +L +T + Q+LD +FS+FC+GK Sbjct: 416 SYHILSAIENLNLLTRPYETSQMLDSMFSEFCLGK 450 >gi|311359265|gb|ADP94166.1| TrmE [Treponema pallidum subsp. pertenue] gi|311705156|gb|ADQ01045.1| TrmE [Treponema pallidum subsp. pertenue] gi|311705164|gb|ADQ01052.1| TrmE [Treponema pallidum subsp. pertenue str. Gauthier] gi|313505077|gb|ADR64245.1| TrmE [Treponema pallidum] Length = 495 Score = 169 bits (429), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 136/494 (27%), Positives = 230/494 (46%), Gaps = 71/494 (14%) Query: 8 IFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LDGRI-LDKG 64 I A++T P+A+ I+R SG S + + + R + + G LDG+ +D+ Sbjct: 12 IVAIATALSPAALGIVRTSGSSSIERVASFFSRAQALTRARAHTFLHGWILDGKTRVDEV 71 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 +L+V+ +P SFTGE + E HGG+ V + L R A GEFS R+F +GK D Sbjct: 72 VLLVYRAPHSFTGEHAVEIICHGGVRTVQAVYR-LCLAQGFRAAQRGEFSFRSFFHGKRD 130 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED- 183 L E++ L+ + T ++ ++ +SG L L + ++ ++++ E+E+ Sbjct: 131 LTRIEAIQSLVDARTCAAQQQAVLHLSGALQQEIAALTRALLAFSATLQGEIEYPEDEET 190 Query: 184 -VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 V + +E+ + L+ + + + R G +IV+ G NAGKSSLFNAL + Sbjct: 191 RVHDIDMRELEPLVERLRRLRACWQERA----LQRTGVRIVLGGCPNAGKSSLFNALLGQ 246 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 D AIV+ +PGTTRD L DLDL G V++ DTAG+R TD+ +E +G+ R+ ++ AD + Sbjct: 247 DRAIVSSVPGTTRDWLEADLDLSGIPVRLCDTAGLRVTDNPIEAQGVVRSEQLLQGADCV 306 Query: 303 LLLKEINSKKEISFPK-------NIDFIFIGTKSDLYS--------------------TY 335 + IN + + + + + T +DL S + Sbjct: 307 FYI--INGRAGVQAADCAFLSDCAVPLVVVVTHNDLMSMSERTQVCQAVQPFISAPVLSC 364 Query: 336 TEEYDH-------------------------LISSFTGEGLEELINKIKSILSNKFKKLP 370 D +S+ T GL+ L + +L ++P Sbjct: 365 ARSQDARGAGEQCLAGGKNGEVRDRAPRAFVCVSAKTHAGLDALRAQTLHLLHG--GQVP 422 Query: 371 F---SIPSHKRHLYHLSQTVRYLEMAS-LNEKDCGLDIIAENLRLASVSLGKITGCVDVE 426 + S+ S ++++ + V+ LE A + GLD + +L A G +TG V E Sbjct: 423 YEELSLGSERQYVL-VDAAVQALEHAQEAYARGFGLDAVVHDLEEALYHCGALTGEVHSE 481 Query: 427 QLLDIIFSKFCIGK 440 +LD +F K C+GK Sbjct: 482 DILDALFEKLCVGK 495 >gi|210135618|ref|YP_002302057.1| tRNA modification GTPase TrmE [Helicobacter pylori P12] gi|210133586|gb|ACJ08577.1| thiophene/furan oxidation protein [Helicobacter pylori P12] Length = 461 Score = 169 bits (429), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 146/457 (31%), Positives = 232/457 (50%), Gaps = 31/457 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A++T AISII++SG + + + + +K+ PR A + F +G +LDK L Sbjct: 14 DTIAAIATPLGKGAISIIKISGNNALNILKQLTQKQDFTPRYAYVHDIFS-NGVLLDKAL 72 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 +I F +P SFTGED E HG + IL+ + RLA GEFS++AF N K+DL Sbjct: 73 VIYFKAPYSFTGEDVCEIQCHGSPLLAQNILQACLNL-GARLAKAGEFSKKAFLNHKMDL 131 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 E E+ LI E E + GEL + L + + E +D+SEE+ Sbjct: 132 SEIEASVQLILCEDESALNALARQLKGELKIFIEEARSDLLKLLASSEVLIDYSEEDIPS 191 Query: 186 NFSSKEVLN---DILFLKNDISSHISQGKLGEIIRN-GYKIVILGHSNAGKSSLFNALAK 241 +F + LN I K+ + +Q + RN G+ + I+G NAGKSSL NA+ Sbjct: 192 DFLKEVSLNLEKQIASFKDLLDFSNAQKQ-----RNKGHALSIVGKPNAGKSSLLNAMLL 246 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 ++ A+V+DI GTTRD + ++L+G+ V++ DTAGIRE+ D +E+ GI+++ +EN D+ Sbjct: 247 EERALVSDIKGTTRDTIEEVIELKGHKVRLIDTAGIRESTDKIERLGIEKSLKSLENCDI 306 Query: 302 ILLLKEINSKKEISFPKNID--------FIFIGTKSDLYSTYTEEY--DHLISSFTGEGL 351 IL + +++ E ID I + K+DL E HL + L Sbjct: 307 ILGVFDLSKPLEKEDFNLIDTLNRAKKPCIVVLNKNDLVPKLELEILKSHLKIPYA--LL 364 Query: 352 EELINKIKSILSNKFKKLPFSIP----SHKRHLYHLSQTVRY----LEMASLNEKDCGLD 403 E K+ L + +K+ P +K L L+QT E+ + L+ Sbjct: 365 ETNTLNSKACLKDLGQKISTFFPKLDTQNKLLLTSLAQTTALENAITELQNAKNHLETLE 424 Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + + ++ A +L +T + Q+LD +FS+FC+GK Sbjct: 425 LFSYHILSAIENLNLLTRPYETSQMLDSMFSEFCLGK 461 >gi|15639539|ref|NP_218989.1| tRNA modification GTPase TrmE [Treponema pallidum subsp. pallidum str. Nichols] gi|189025778|ref|YP_001933550.1| tRNA modification GTPase TrmE [Treponema pallidum subsp. pallidum SS14] gi|6647879|sp|O83561|MNME_TREPA RecName: Full=tRNA modification GTPase mnmE gi|226704786|sp|B2S3E2|MNME_TREPS RecName: Full=tRNA modification GTPase mnmE gi|3322842|gb|AAC65535.1| thiophene and furan oxidation protein (thdF) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018353|gb|ACD70971.1| thiophene and furan oxidation protein [Treponema pallidum subsp. pallidum SS14] gi|291059927|gb|ADD72662.1| tRNA modification GTPase TrmE [Treponema pallidum subsp. pallidum str. Chicago] gi|313505085|gb|ADR64252.1| TrmE [Treponema pallidum subsp. pallidum str. Mexico A] gi|313505093|gb|ADR64259.1| TrmE [Treponema pallidum subsp. pallidum] Length = 495 Score = 169 bits (428), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 136/494 (27%), Positives = 230/494 (46%), Gaps = 71/494 (14%) Query: 8 IFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LDGRI-LDKG 64 I A++T P+A+ I+R SG S + + + R + + G LDG+ +D+ Sbjct: 12 IVAIATALSPAALGIVRTSGSSSIERVASFFSRAQALTRARAHTFLHGWILDGKTRVDEV 71 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 +L+V+ +P SFTGE + E HGG+ V + L R A GEFS R+F +GK D Sbjct: 72 VLLVYRAPHSFTGEHAVEIICHGGVRTVQAVYR-LCLAQGFRAAQRGEFSFRSFFHGKRD 130 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED- 183 L E++ L+ + T ++ ++ +SG L L + ++ ++++ E+E+ Sbjct: 131 LTRIEAIQSLVDARTCAAQQQAVLHLSGALQQEIAALTRALLAFSATLQGEIEYPEDEET 190 Query: 184 -VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 V + +E+ + L+ + + + R G +IV+ G NAGKSSLFNAL + Sbjct: 191 RVHDIDMRELEPLVERLRRLRACWQERA----LQRTGVRIVLGGCPNAGKSSLFNALLGQ 246 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 D AIV+ +PGTTRD L DLDL G V++ DTAG+R TD+ +E +G+ R+ ++ AD + Sbjct: 247 DRAIVSSVPGTTRDWLEADLDLSGIPVRLCDTAGLRVTDNPIEAQGVVRSEQLLQGADCV 306 Query: 303 LLLKEINSKKEISFPK-------NIDFIFIGTKSDLYS--------------------TY 335 + IN + + + + + T +DL S + Sbjct: 307 FYI--INGRAGVQAADCAFLSDCAVPLVVVVTHNDLMSMSERIQVCQAVQPFISAPVLSC 364 Query: 336 TEEYDH-------------------------LISSFTGEGLEELINKIKSILSNKFKKLP 370 D +S+ T GL+ L + +L ++P Sbjct: 365 ARSQDARGAGEQCLAGGKNGEVRDRAPRAFVCVSAKTHAGLDALRAQTLHLLHG--GQVP 422 Query: 371 F---SIPSHKRHLYHLSQTVRYLEMAS-LNEKDCGLDIIAENLRLASVSLGKITGCVDVE 426 + S+ S ++++ + V+ LE A + GLD + +L A G +TG V E Sbjct: 423 YEELSLGSERQYVL-VDAAVQALEHAQEAYARGFGLDAVVHDLEEALYHCGALTGEVHSE 481 Query: 427 QLLDIIFSKFCIGK 440 +LD +F K C+GK Sbjct: 482 DILDALFEKLCVGK 495 >gi|157781607|gb|ABV72158.1| GTP-binding thiophene and furan oxidation protein [Enterococcus casseliflavus] Length = 270 Score = 169 bits (428), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 97/271 (35%), Positives = 156/271 (57%), Gaps = 7/271 (2%) Query: 11 VSTGALPSAISIIRLSGPSCFQVCEFICKK-KKPFPRKASLRYFFGL-----DGRILDKG 64 +ST AISI+RLSG + + I + K + S +G + R++D+ Sbjct: 1 ISTPPGEGAISIVRLSGEEAIAIADRIFQAGTKTLAQVPSHTIHYGHIVDPEENRLMDEV 60 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 +L V P +FT ED E + HGGI VVN +L+ L RLA PGEF++RAF NG++D Sbjct: 61 MLSVMKKPRTFTREDVVEINCHGGIVVVNQLLQ-LVLRQGARLAEPGEFTKRAFLNGRVD 119 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ DLI ++T+ L++ + G LS L ++ + +E ++D+ E +DV Sbjct: 120 LSQAEAVMDLIRAKTDKAMNLAVNQLDGNLSHLIRTLRQEILETLAQVEVNIDYPEYDDV 179 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + +++ +L +K I + ++ + G+I+R G I+G N GKSSL N L +++ Sbjct: 180 EELTTRLLLEKATMVKGQIQALLATAQQGKILREGLSTAIIGRPNVGKSSLLNHLLREEK 239 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 AIVTDI GTTRDV+ +++ G +K+ DTA Sbjct: 240 AIVTDIAGTTRDVIEEYVNVRGVPLKLIDTA 270 >gi|1199801|emb|CAA64971.1| thdF [Borrelia burgdorferi] gi|2689169|emb|CAA06004.1| thdF [Borrelia burgdorferi] Length = 463 Score = 169 bits (428), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 144/466 (30%), Positives = 238/466 (51%), Gaps = 42/466 (9%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD---GRILD 62 + I A++T L SA+ +IR SG S I K K F ++L G G ILD Sbjct: 9 DDIVALATPFLSSALCVIRSSGASS------ISKFSKIFSNHSALNSASGNTIHYGYILD 62 Query: 63 KG-------LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 +++ +P+SFTG+D+ E HG + + I++ K R+A PGEF+ Sbjct: 63 SENGCKVDEVVVCLYAPKSFTGQDAIEVMAHGSVIGIKKIIDLFLK-SGFRMAEPGEFTL 121 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF KIDL +AE++ ++I ++T L++ +SG L + + S + Sbjct: 122 RAFLAKKIDLTKAEAIHEIIFAKTNKTYSLAVNKLSGALFVKIDAIKKSILNFLSAVSVY 181 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 LD+ +V + + IL K ++ I+ K+ E I NG +V+ G NAGKSSL Sbjct: 182 LDY----EVDDHEISIPFDLILSSKAELKKLINSYKVYEKIDNGVALVLAGSVNAGKSSL 237 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 FN KKD +IV+ PGTTRD + +L+G L + DTAG+R+ D+ VE+ GI+++ Sbjct: 238 FNLFLKKDRSIVSSYPGTTRDYIEASFELDGILFNLFDTAGLRDADNFVERLGIEKSNSL 297 Query: 296 VENADLILLLKEINS---KKEISF----PKNIDFIFIGTKSDL-YSTYTEEYDH------ 341 ++ A L++ + +++S K + F N +F+ K DL + TEE+ Sbjct: 298 IKEASLVIYVIDVSSNLTKDDFLFIDSNKSNSKILFVLNKIDLKINKSTEEFVRSKVLNS 357 Query: 342 ----LISSFTGEGLEELINKIKSILSNKFKKLPFS--IPSHKRHLYHLSQTVRY-LEMAS 394 +IS+ EG++ L +KI++++S + ++ I S R + L + L++ S Sbjct: 358 SNLIMISTKNLEGIDILYDKIRALISYERVEIGLDDIIISSNRQMQLLEKAYALILDLLS 417 Query: 395 LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++ D++A + LG+ITG V E +LD +F FC+GK Sbjct: 418 KIDRQVSYDMLAFDAYEIINCLGEITGEVSSEDVLDNMFKNFCLGK 463 >gi|257457804|ref|ZP_05622965.1| tRNA modification GTPase TrmE [Treponema vincentii ATCC 35580] gi|257444854|gb|EEV19936.1| tRNA modification GTPase TrmE [Treponema vincentii ATCC 35580] Length = 459 Score = 169 bits (428), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 142/452 (31%), Positives = 232/452 (51%), Gaps = 48/452 (10%) Query: 22 IIRLSGPSCFQ-VCEFICKKKKPFPRKA-SLRYFFGLD-GRILDKGLLIVFPSPESFTGE 78 I+R SG + + F + + K SL Y + D G +D+ +L V+ +P+S TGE Sbjct: 23 IVRTSGKRSLEFISRFFSRPQALLQAKGHSLVYGWIHDEGVKIDEVVLCVYRAPKSNTGE 82 Query: 79 DSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSE 138 ++ E HGG VV + L R A GEF+ R+F +GK DL AE++ ++I S+ Sbjct: 83 NAVEIICHGGPGVVKTVYR-LCIKNGFRAAERGEFTFRSFIHGKADLTRAEAVREIIDSK 141 Query: 139 TEMQRRLSMEGMSG----ELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLN 194 T ++ + +SG E+ S+ I L + +E +++ E+E+ S E L Sbjct: 142 THTAQKKAAGRLSGNVFREIESVKSDLITAL----AALEVGIEYPEDEETIADSFDETL- 196 Query: 195 DILFLKNDISSH---ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIP 251 LK +S+ + +I + G ++V+ G +NAGKSSLFNAL K+D AIV+DI Sbjct: 197 ----LKKPLSALQLLADSWQTEKIYQAGVRLVLAGKTNAGKSSLFNALLKEDRAIVSDIH 252 Query: 252 GTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL---KEI 308 GTTRD L +LD +G I DTAG+R T+D +E G++R+ AD++L L + Sbjct: 253 GTTRDWLEAELDFKGIPAHIFDTAGLRATEDAIEAIGVRRSVELASAADIVLYLIDGTKP 312 Query: 309 NSKKEISFPK--NIDFIFIGTKSD--------LYSTYTEEYDHL-ISSFTGEGLEELINK 357 ++++I+F + + I + TK+D + + Y + +SS TG G++ LI+ Sbjct: 313 PAEEDIAFIRENTVPLIIVQTKADKTGKVEPEVLPAALQRYPAVSLSSKTGAGIDRLIDT 372 Query: 358 IKSILSNKFKKLP-------FSIPSHKRHLYHLSQTVRYLEMASLNEKDCG--LDIIAEN 408 + +++ LP K + + VRY +L G LD + ++ Sbjct: 373 VVDLVTAD-TALPMPDGNVSLGTERQKEAVTAALEAVRY----ALEAGRSGYPLDAVIQD 427 Query: 409 LRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + A +LG +TG V + +LD IFS FC+GK Sbjct: 428 IEDAVHALGSVTGEVRSDDILDKIFSGFCVGK 459 >gi|157781615|gb|ABV72162.1| GTP-binding thiophene and furan oxidation protein [Enterococcus columbae] Length = 270 Score = 169 bits (427), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 99/271 (36%), Positives = 163/271 (60%), Gaps = 7/271 (2%) Query: 11 VSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKA-SLRYFFGLD---GRILDKG 64 +ST AISI+RLSG + + F+ KK+ ++ +L Y D ++LD+ Sbjct: 1 ISTAPGEGAISIVRLSGSEALAIADQVFVAGKKQLSAVESHTLHYGHIHDKERNQVLDEV 60 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 ++ V +P++FT ED E + HGG+ V N IL+ L + RLA PGEF++RAF NG++D Sbjct: 61 MVAVMRAPKTFTREDVVEINCHGGMVVTNKILQLLLR-KGARLAEPGEFTKRAFLNGRMD 119 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ DLI ++T+ +L+M + G LS L + ++ + +E ++D+ E +DV Sbjct: 120 LSQAEAVMDLIHAKTDKAMQLAMNQLDGRLSQLIRKLRQEILETLAQVEVNIDYPEYDDV 179 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + +S+ + + ++ +I +S G+I+R+G K I+G N GKSSL N L ++ Sbjct: 180 EEMTSQLMFANAKQVEAEIIRLLSTANQGKILRDGLKTAIIGRPNVGKSSLLNYLLDEEK 239 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 AIVTDI GTTRDV+ +++ G +K+ DTA Sbjct: 240 AIVTDIAGTTRDVIEEYVNVNGVPLKLVDTA 270 >gi|262200042|ref|YP_003271251.1| tRNA modification GTPase TrmE [Haliangium ochraceum DSM 14365] gi|262083389|gb|ACY19358.1| tRNA modification GTPase TrmE [Haliangium ochraceum DSM 14365] Length = 474 Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 135/479 (28%), Positives = 228/479 (47%), Gaps = 45/479 (9%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVC-EFICKKKKPFPRKASLRYFFGL--- 56 ++ +++TI A++T + ++R+SGP V + + P +A +GL Sbjct: 2 LSAQRDTIAAIATPTGTGGVGVVRISGPQAGAVLGRVLARAPDDLPDRA---LVYGLARD 58 Query: 57 -DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 DG LD L ++ +P SFTGED AE H HGG ++ +L + + R A PGEF+R Sbjct: 59 RDGGRLDDVLAVLMRAPRSFTGEDVAEIHGHGGPVNMSRLLRAVLEQ-GARPAEPGEFTR 117 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAFENGK+DL+ AE++ D+I + +E RL+ ++G+ + T + + +EA Sbjct: 118 RAFENGKLDLVRAEAILDVIEAGSERAWRLAQAQLAGDFGQQVTALRARATSLLAEVEAC 177 Query: 176 LDFSEE-EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234 +DF EE ED ++ EV L ++S LG +R+G ++ ++G NAGKSS Sbjct: 178 IDFPEEGEDY--LATSEVAARCRTLGRELSGFAGTFALGRALRSGIEVALVGPVNAGKSS 235 Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-----ETDDIVEKEGI 289 +FNAL + AIV PGTTRD + +G V + DTAG R + + +E GI Sbjct: 236 IFNALIGSERAIVDAAPGTTRDYVEARAVWDGVPVTVIDTAGERDVAGSQAGERIEARGI 295 Query: 290 KRTFLEVENADLILLLK--------------------------EINSKKEISFPKNIDFI 323 + ADL + L+ + ++ + + + Sbjct: 296 EMGRARAAQADLRVHLRSATGAGGAQGEGGGDGADRAHGAAGTQDDAGAWSAASADEREL 355 Query: 324 FIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYH 382 + +K DL + + S+ TG GL+ L I + + + + + +R Sbjct: 356 QVWSKCDLGAPADGDPRPRTSARTGAGLDALKQLILERVCGASLEADEGHVVTSERQRDL 415 Query: 383 LSQTVRYLEMASLNEKDCG-LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L+ E A+ ++++A +R A+ L ++ G E++LD +F +FCIGK Sbjct: 416 LAHAAAAFERAAQARDARAPIEVLALEIREATEQLARLMGERVGEEVLDDLFGRFCIGK 474 >gi|308800228|ref|XP_003074895.1| COG0486: Predicted GTPase (ISS) [Ostreococcus tauri] gi|116061445|emb|CAL52163.1| COG0486: Predicted GTPase (ISS) [Ostreococcus tauri] Length = 508 Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 146/475 (30%), Positives = 228/475 (48%), Gaps = 45/475 (9%) Query: 4 EKETIFAVST---GALPSAISIIRLSGPSCFQVCE---FICKKKKPFPRKASLRYFFG-- 55 + +TI V+T GA+ ++I+RLSGP+ + + + K S R +G Sbjct: 41 DADTIVGVATATAGAV-GGVAIVRLSGPNALTIASDVFAVGRGGKGVETWESHRATYGRV 99 Query: 56 --LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEF 113 DGR +D+ + I F +P S+T ED E H HGG V L ++ R A GEF Sbjct: 100 TEADGRAIDEAIAIAFIAPRSYTAEDVVELHCHGGAVCVQRTLMRCREL-GARTARRGEF 158 Query: 114 SRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIE 173 + RAF NG++DL +AE++ L+S+ T ++ M G L++ + + + +E Sbjct: 159 TLRAFLNGRLDLAQAEAVHALVSARTTAGADSALAAMRGGLTTPVSEARRTCVDLLAELE 218 Query: 174 ADLDFSEEE---DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNA 230 A LDF +E DV+ K + I + K G ++ G + ILG N Sbjct: 219 ARLDFDDEMVPLDVEAIERKAS-----EAREKIREVLQTAKRGALLETGVTVAILGRPNV 273 Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGI 289 GKS L NAL + + +IVT GTTRDV+ +++ G V + DTAGIR ETDD VE+ G+ Sbjct: 274 GKSRLLNALTRSERSIVTSREGTTRDVVEASMNVAGIPVVLLDTAGIRSETDDEVEQIGV 333 Query: 290 KRTFLEVENADLILLLKEINS----------KKEISFPKNID--FIFIGTKSDLYST--Y 335 +R+ AD++ L+ + + K EI+ + I + K+D+ Sbjct: 334 ERSRAAAAGADVVALVVDASRGWVSEDYDIWKSEIAANERARGAAILVINKTDVADAENA 393 Query: 336 TEEYDHL--------ISSFTGEGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYHLSQT 386 T D + IS+ TG+ L EL + + I + S ++R L Sbjct: 394 TPPADVVDSFSDVVRISAATGDNLVELERALARCITGDVVNTESESWAVNQRQAEALHVA 453 Query: 387 VRYLE-MASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + L+ + + D LD +LR A+ +LG +TG E +LD IF +FCIGK Sbjct: 454 LDSLDRLRDTIDADMPLDFWTIDLREAAFALGTVTGEDVTEDVLDTIFERFCIGK 508 >gi|188528222|ref|YP_001910909.1| tRNA modification GTPase TrmE [Helicobacter pylori Shi470] gi|254811486|sp|B2UVJ7|MNME_HELPS RecName: Full=tRNA modification GTPase mnmE gi|188144462|gb|ACD48879.1| tRNA modification GTPase TrmE [Helicobacter pylori Shi470] Length = 450 Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 145/456 (31%), Positives = 231/456 (50%), Gaps = 29/456 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A++T AIS+I++SG S + + + +K+ PR A + F +G +LDK L Sbjct: 3 DTIAAIATPLGKGAISVIKISGNSALNILKQLTQKQDFTPRYAYVCDIFS-NGVLLDKAL 61 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 +I F +P SFTGED E HG + IL+ + RLA GEFS++AF N K+DL Sbjct: 62 VIYFKAPYSFTGEDVCEIQCHGNPLLAQNILQACLNL-GARLAKAGEFSKKAFLNHKMDL 120 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 E E+ LI E E + GEL + L + + E +D+SEE+ Sbjct: 121 SEIEASVQLILCEDESVLNALARQLKGELKIFIEEARGNLLKLLASSEVLIDYSEEDIPS 180 Query: 186 NFSSKEVLN---DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 +F + LN I K+ + +Q + + G+ + I+G NAGKSSL NA+ + Sbjct: 181 DFLDEVSLNLEKQIASFKDLLDFSNTQKQKNK----GHALSIVGKPNAGKSSLLNAMLLE 236 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 + A+V+DI GTTRD + ++L+G+ V++ DTAGIRE+ D +E+ GI+++ +EN D+I Sbjct: 237 ERALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRESADKIERLGIEKSLKSLENCDII 296 Query: 303 LLLKEINSKKEISFPKNID--------FIFIGTKSDLYSTYTEEY--DHLISSFTGEGLE 352 L + +++ E ID I + K+DL E HL ++ LE Sbjct: 297 LGVFDLSKPLEKEDFNLIDTLNRAKKPCIVVLNKNDLAPKLELEILKSHLKIPYS--LLE 354 Query: 353 ELINKIKSILSNKFKKLPFSIP----SHKRHLYHLSQTVRY----LEMASLNEKDCGLDI 404 K+ L + +K+ P +K L L+Q E+ + L++ Sbjct: 355 TNTLNSKACLKDLSQKISAFFPKLDTQNKLLLTSLAQKTALENAIFELQNAKNHLETLEL 414 Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + +L A SL +T + Q+LD +FS+FC+GK Sbjct: 415 FSYHLLSAIESLNLLTRPYETSQMLDSMFSEFCLGK 450 >gi|317013217|gb|ADU83825.1| tRNA modification GTPase TrmE [Helicobacter pylori Lithuania75] Length = 450 Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 145/457 (31%), Positives = 234/457 (51%), Gaps = 31/457 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A++T AISII++SG + V + + +K+ PR A +R F +G +LDK L Sbjct: 3 DTIAAIATPLGKGAISIIKISGHNALNVLKQLTQKQDFTPRYAYVRDIFS-NGVLLDKAL 61 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 +I F +P SFTGED E HG + IL+ + RLA GEFS++AF N K+DL Sbjct: 62 VIYFKAPYSFTGEDMCEIQCHGSPLLAQNILQACLNL-GARLAKAGEFSKKAFLNHKMDL 120 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 E E+ LI E E + GEL + L + + E +D+SEE+ Sbjct: 121 SEIEASVQLILCEDESVLNALARQLKGELKIFIEEARSDLLKLLASSEVLIDYSEEDIPS 180 Query: 186 NF---SSKEVLNDILFLKNDISSHISQGKLGEIIRN-GYKIVILGHSNAGKSSLFNALAK 241 +F S+ + I K+ + +Q + RN G+ + I+G NAGKSSL NA+ Sbjct: 181 DFLDGVSQNLEKQIASFKDLLDFSNTQKQ-----RNKGHALSIVGKPNAGKSSLLNAMLL 235 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 ++ A+V+DI GTTRD + ++L+G+ V++ DTAGIRE+ D +E+ GI+++ +EN D+ Sbjct: 236 EERALVSDIKGTTRDTIEEIIELQGHKVRLIDTAGIRESTDKIERLGIEKSLKSLENCDI 295 Query: 302 ILLLKEINSKKEISFPKNID--------FIFIGTKSDLYSTYTEEY--DHLISSFTGEGL 351 IL + +++ E ID I + K+DL E HL ++ L Sbjct: 296 ILGVFDLSKPLEKEDFNLIDTLNRAKKPCIVVLNKNDLAPKLELEILKSHLKIPYS--LL 353 Query: 352 EELINKIKSILSNKFKKLPFSIP----SHKRHLYHLSQTVRY----LEMASLNEKDCGLD 403 E K+ L + +K+ P +K L L+Q + E+ + L+ Sbjct: 354 ETNTLNSKACLKDLSQKISEFFPKLDTQNKLLLTSLAQKIALENAITELQNAKNHLETLE 413 Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + + ++ A +L +T + Q+LD +F++FC+GK Sbjct: 414 LFSYHILSAIENLNLLTRPYETSQMLDSMFAEFCLGK 450 >gi|300871775|ref|YP_003786648.1| tRNA-modification GTPase TrmE [Brachyspira pilosicoli 95/1000] gi|300689476|gb|ADK32147.1| tRNA-modification GTPase, TrmE [Brachyspira pilosicoli 95/1000] Length = 462 Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 143/463 (30%), Positives = 244/463 (52%), Gaps = 36/463 (7%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC----KKKKPFPRKASLRYFFGL----D 57 +TI A++T SA+++IR+SG + IC + K + + ++ L + Sbjct: 8 DTIVALATPYSKSALALIRMSGKDSLNIASKICYYANNENKNITKFEHRKSYYALIKDEN 67 Query: 58 GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 +D+ +++ SP +FT ED+ EF HG I V+ ++ + + R AN GEF+ RA Sbjct: 68 NTPIDELVVLTTLSPNTFTSEDTVEFMCHGSIVVIESLINLIIR-NGARQANRGEFTYRA 126 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 + NG+I + EAE++ DLI S + S+ + G L+ + + + + I +LD Sbjct: 127 YINGRIGISEAEAIHDLIDSNNRLMAEASIYKIRGRLTREIDKLRENVKNTLMLIYGELD 186 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 F E+ D + FS +++ + +K DI + ++ K E + NG K+ I+G NAGKSS+FN Sbjct: 187 FPED-DTETFSYDKLIENFYTIKKDIENILNNSKRVENLINGIKVSIVGRVNAGKSSIFN 245 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RETDDIVEKEGIKRTFLEV 296 + K+ AIV++I GTTRD L+ ++ ++ DTAG +E D+ +E EGI+R Sbjct: 246 MILDKERAIVSNIAGTTRDFLSENIYIDNIPFYFMDTAGFHKEADNDIELEGIERAKKCA 305 Query: 297 ENADLILLL------KEINSKKEISF---PKNIDFIFIGTKSDLYSTYTEEYDHL--ISS 345 AD+I+ + + I F KN + I++ K DL + E+ D+ IS+ Sbjct: 306 NEADIIIAVFDYNDNANDDDINLIEFLQQLKNKNIIYVLNKIDLEKKFNEKIDNAIEIST 365 Query: 346 FTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA--SLN---EKDC 400 T +G E+LI +K N K +I + + ++ + + YLE A LN EK Sbjct: 366 KTKQGKEKLIEALK----NHIKDSDITIFNKESYVNNRERG--YLERAIEQLNICIEKSN 419 Query: 401 G---LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LD +AE + + + LG ++G ++ E++++ IF FCIGK Sbjct: 420 NNHLLDEVAEEINILNNILGNVSGKIEAEEIINEIFENFCIGK 462 >gi|224534206|ref|ZP_03674784.1| tRNA modification GTPase TrmE [Borrelia spielmanii A14S] gi|224514308|gb|EEF84624.1| tRNA modification GTPase TrmE [Borrelia spielmanii A14S] Length = 464 Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 149/476 (31%), Positives = 251/476 (52%), Gaps = 61/476 (12%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASL--------RYFFGLD 57 + I A++T L SA+ +IR SG S I K K F +A+L Y + LD Sbjct: 9 DDIVALATPFLSSALCVIRSSGASS------ISKFSKIFSNQAALNSAAGNTIHYGYILD 62 Query: 58 GR---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114 +D+ ++ ++ +P+SFTG+DS E HG + + I++ K R+A PGEF+ Sbjct: 63 NENNCKVDEVVVCLYRAPKSFTGQDSIEVIAHGSVIGIKKIIDLFLK-SGFRMAEPGEFT 121 Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLT-HIRSFIE 173 R+F KIDL +AE++ ++I ++T L++ +SG L ID + HI +F+ Sbjct: 122 FRSFLAKKIDLTKAEAINEIIFAKTNKTYSLAVNKLSGAL----FVKIDTIKKHILNFLS 177 Query: 174 A---DLDFSEEEDVQNFSSKEV---LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227 A LD+ ++ +E+ + IL K ++ I+ K+ E I +G +V+ G Sbjct: 178 AVSVYLDYEVDD-------REIGIPFDLILSSKAELKKLINSYKVYEKIDHGITLVLAGS 230 Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKE 287 NAGKSSLFN KKD +IV+ PGTTRD + +L+G L I DTAG+R+ D+ VE+ Sbjct: 231 VNAGKSSLFNLFLKKDRSIVSSYPGTTRDYIEASFELDGVLFNIFDTAGLRDADNFVERL 290 Query: 288 GIKRTFLEVENADLILLLKEINS---KKEISF----PKNIDFIFIGTKSDL-YSTYTEEY 339 GI+++ ++ A L++ + +++S + ++ F N +F+ K DL + TEE+ Sbjct: 291 GIEKSNSLIKEASLVIYVIDVSSDLTRDDLLFIDSNKSNAKILFVLNKIDLKINKSTEEF 350 Query: 340 DH----------LISSFTGEGLEELINKIKSILSNKFKKLPFS----IPSHKRHLYHLSQ 385 +IS EG++ L +KIK+++S ++K+ I S +R + L + Sbjct: 351 VRSNVLNSSNLIMISIKDLEGIDILYDKIKTLIS--YEKVEIGLDDIIISSRRQIQLLEK 408 Query: 386 TVRY-LEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L++ S ++ D++A + LG+ITG V E +L+ +F FC+GK Sbjct: 409 AYALILDLLSKIDRQVSYDMLAFDAYEIINCLGEITGEVSSEDVLNNMFKNFCLGK 464 >gi|308183548|ref|YP_003927675.1| tRNA modification GTPase TrmE [Helicobacter pylori PeCan4] gi|308065733|gb|ADO07625.1| tRNA modification GTPase TrmE [Helicobacter pylori PeCan4] Length = 450 Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 109/301 (36%), Positives = 169/301 (56%), Gaps = 9/301 (2%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A++T AIS+I++SG + + + + +K+ PR A +R F DG +LDK L Sbjct: 3 DTIAAIATPLGKGAISVIKISGNNALNILKQLTQKQDFTPRYAYVRDIFS-DGVLLDKAL 61 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 +I F +P SFTGED E HG + IL+ + RLA GEFS++AF N K+DL Sbjct: 62 VIYFKAPYSFTGEDVCEIQCHGNPLLAQNILQACLNL-GARLAKAGEFSKKAFLNHKMDL 120 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 E E+ LI E E + GEL + L + + E +D+SEE+ Sbjct: 121 SEIEASVQLILCEDESVLNALARQLKGELKIFIEEARSDLLKLLASSEVLIDYSEEDIPS 180 Query: 186 NFSSKEVLNDILFLKNDISSH---ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 +F + N L+ I+S + + + G+ + I+G NAGKSSL NA+ + Sbjct: 181 DFLKEVSFN----LEKQIASFKDLLDFSNMQKQKNKGHALSIVGKPNAGKSSLLNAMLLE 236 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 + A+V+DI GTTRD + ++L+G+ V++ DTAGIRE+ D +E+ GI+++ +EN D+I Sbjct: 237 ERALVSDIKGTTRDTIEEVIELKGHKVRLIDTAGIRESADRIERLGIEKSLKSLENCDII 296 Query: 303 L 303 L Sbjct: 297 L 297 >gi|157781585|gb|ABV72147.1| GTP-binding thiophene and furan oxidation protein [Enterococcus hirae] gi|157781587|gb|ABV72148.1| GTP-binding thiophene and furan oxidation protein [Enterococcus hirae] Length = 270 Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 98/271 (36%), Positives = 161/271 (59%), Gaps = 7/271 (2%) Query: 11 VSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKA-SLRYFFGLDGR---ILDKG 64 +ST AISI+RLSG + + + C KK + ++ Y D + I+D+ Sbjct: 1 ISTPPGEGAISIVRLSGDQAVALADKVYRCGKKSLLEVPSHTIHYGHITDPKNEQIIDEV 60 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 ++ V +P++FT ED E + HGGI VVN IL+ L + RLA PGEF++RAF NG++D Sbjct: 61 MVSVMLAPKTFTREDVVEINCHGGIVVVNQILQLLLR-EGARLAEPGEFTKRAFLNGRVD 119 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ DLI ++T+ L++ + G LSSL ++ + +E ++D+ E +DV Sbjct: 120 LSQAEAVMDLIRAKTDKAMGLALNQLDGNLSSLIRSLRQEILETLAQVEVNIDYPEYDDV 179 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + +++ +L ++ I + ++ K G+++R G I+G N GKSSL N L +++ Sbjct: 180 EELTTRLLLEKATMIQQRIQALLATSKQGKVLREGLSTAIIGRPNVGKSSLLNHLLREEK 239 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 AIVTDI GTTRDV+ +++ G +K+ DTA Sbjct: 240 AIVTDIAGTTRDVIEEYVNVRGVPLKLIDTA 270 >gi|219684548|ref|ZP_03539491.1| tRNA modification GTPase TrmE [Borrelia garinii PBr] gi|219671910|gb|EED28964.1| tRNA modification GTPase TrmE [Borrelia garinii PBr] Length = 464 Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 144/473 (30%), Positives = 250/473 (52%), Gaps = 55/473 (11%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASL--------RYFFGLD 57 + I A++T L SA+ +IR SG S I K K F ++L Y + LD Sbjct: 9 DDIVALATPFLSSALCVIRSSGASS------ISKFSKIFSNHSALNSAPGNTIHYGYILD 62 Query: 58 GR---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114 +D+ ++ ++ +P+SFTG+DS E HG + + I++ K R+A PGEF+ Sbjct: 63 NENNCKVDEVVVCLYRAPKSFTGQDSIEVIAHGSVIGIKKIIDLFLK-SGFRMAEPGEFT 121 Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGEL----SSLYGQWIDKLTHIRS 170 R+F KIDL +AE++ ++I ++T L++ +SG L ++ G ++ L+ + Sbjct: 122 LRSFFAKKIDLTKAEAINEIIFAKTNKTYSLAVNKLSGALFVKIDAIKGCILNFLSAVSV 181 Query: 171 FIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNA 230 +++ ++D E + +LN LK I+S+ K+ E I +G +V+ G NA Sbjct: 182 YLDYEVDDHE----ISIPFDLILNSKAELKKLINSY----KVYEKIDHGVTLVLAGSVNA 233 Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIK 290 GKSSLFN KKD +IV+ PGTTRD + +L+G L + DTAG+R+ D+ VE+ GI+ Sbjct: 234 GKSSLFNMFLKKDRSIVSSYPGTTRDYIEASFELDGILFNLFDTAGLRDADNFVERLGIE 293 Query: 291 RTFLEVENADLILLLKEINS---KKEISF----PKNIDFIFIGTKSDL-YSTYTEEYDH- 341 ++ ++ A L++ + +++S +++ F N +F+ K DL + TEE+ Sbjct: 294 KSNSLIKEASLVIYVIDVSSNLTREDFLFIDSNKSNSKILFVLNKIDLKINKSTEEFVRS 353 Query: 342 ---------LISSFTGEGLEELINKIKSILSNKFKKLPFS----IPSHKRHLYHLSQTVR 388 +IS+ EG++ L +KIK+++S ++K+ I S R + L + Sbjct: 354 SVLNSSNLIMISTKNLEGIDILYDKIKTLIS--YEKVEIGLDDIIISSSRQMQLLEKAYA 411 Query: 389 -YLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L++ + ++ D++A + LG+ITG V E +LD +F FC+GK Sbjct: 412 LVLDLLNKIDRQVSYDMLAFDAYEIINCLGEITGEVSSEDVLDNMFKNFCLGK 464 >gi|51598440|ref|YP_072628.1| tRNA modification GTPase TrmE [Borrelia garinii PBi] gi|81610174|sp|Q662I5|MNME_BORGA RecName: Full=tRNA modification GTPase mnmE gi|51573011|gb|AAU07036.1| thiophene and furan oxidation protein [Borrelia garinii PBi] Length = 464 Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 144/470 (30%), Positives = 244/470 (51%), Gaps = 43/470 (9%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASL--------RYFF 54 + I A++T L SA+ +IR SG S I K K F ++L Y + Sbjct: 6 QRDDDIVALATPFLSSALCVIRSSGASS------IPKFSKIFSNHSALNSAPGNTIHYGY 59 Query: 55 GLDGR---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPG 111 LD +D+ ++ ++ +P+SFTG+DS E HG + + I++ K R+A PG Sbjct: 60 ILDNENNCKVDEVVVCLYRAPKSFTGQDSIEVIAHGSVIGIKKIIDLFLK-SGFRMAEPG 118 Query: 112 EFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSF 171 EF+ R+F KI L +AE+L ++I + T L++ +SG L + L +I S Sbjct: 119 EFTLRSFLAKKIALTKAEALHEIIFATTNKTYSLAVTPLSGALFANLDAIQRCLLNILSA 178 Query: 172 IEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAG 231 + A LD+ ++ + +LN LK I+S+ K+ E I +G +V+ G NAG Sbjct: 179 VSAYLDYEVDDHEISIPFDLILNSKAELKKLINSY----KVYEKIDHGVTLVLAGSVNAG 234 Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR 291 KSSLFN KKD +IV+ PGTTRD + +L+G L + DTAG+++ D+ VE+ GI++ Sbjct: 235 KSSLFNMFLKKDRSIVSSYPGTTRDYIEATFELDGILFNLFDTAGLKDADNFVERLGIEK 294 Query: 292 TFLEVENADLILLLKEINS---KKEISF----PKNIDFIFIGTKSDL-YSTYTEEYDH-- 341 + ++ A L++ + +++S +++ F N +F+ K DL + TEE+ Sbjct: 295 SNSLIKEASLVIYVIDVSSNLPREDFLFIDSNKSNSKILFVLNKIDLNINKSTEEFVRSS 354 Query: 342 --------LISSFTGEGLEELINKIKSILSNKFKKLPFS--IPSHKRHLYHLSQTVR-YL 390 +IS+ EG++ L +KIK+++S + ++ I S R + L + L Sbjct: 355 VLNSSNLIMISTKNLEGIDILYDKIKTLISYERVEIGLDDIIISSSRQMQLLEKAYALVL 414 Query: 391 EMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++ + ++ D++A + LG+ITG V E +LD +F FC+GK Sbjct: 415 DLLNKIDRQVSYDMLAFDAYEIINCLGEITGEVSSEDVLDNMFKNFCLGK 464 >gi|157781603|gb|ABV72156.1| GTP-binding thiophene and furan oxidation protein [Enterococcus casseliflavus] gi|157781605|gb|ABV72157.1| GTP-binding thiophene and furan oxidation protein [Enterococcus casseliflavus] Length = 270 Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 97/270 (35%), Positives = 155/270 (57%), Gaps = 7/270 (2%) Query: 12 STGALPSAISIIRLSGPSCFQVCEFICKK-KKPFPRKASLRYFFGL-----DGRILDKGL 65 ST AISI+RLSG + + I + K + S +G + R++D+ + Sbjct: 2 STPPGEGAISIVRLSGEEAIAIADQIFQAGTKTLAQVPSHTIHYGHIVDPEENRLMDEVM 61 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 L V P +FT ED E + HGGI VVN +L+ L RLA PGEF++RAF NG++DL Sbjct: 62 LSVMKKPRTFTREDVVEINCHGGIVVVNQLLQ-LVLRQGARLAEPGEFTKRAFLNGRVDL 120 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ DLI ++T+ L++ + G LS L ++ + +E ++D+ E +DV+ Sbjct: 121 SQAEAVMDLIRAKTDKAMNLAVNQLDGNLSHLIRTLRQEILETLAQVEVNIDYPEYDDVE 180 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 +++ +L +K I + ++ + G+I+R G I+G N GKSSL N L +++ A Sbjct: 181 ELTTRLLLEKATMVKGQIQALLATAQQGKILREGLSTAIIGRPNVGKSSLLNHLLREEKA 240 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 IVTDI GTTRDV+ +++ G +K+ DTA Sbjct: 241 IVTDIAGTTRDVIEEYVNVRGVPLKLIDTA 270 >gi|157781617|gb|ABV72163.1| GTP-binding thiophene and furan oxidation protein [Enterococcus phoeniculicola] Length = 270 Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 99/271 (36%), Positives = 158/271 (58%), Gaps = 7/271 (2%) Query: 11 VSTGALPSAISIIRLSGPSCFQVCEFICKK-KKPFPRKASLRYFFG--LDGR---ILDKG 64 +ST AISI+RLSG Q+ + + + K S +G +D + I+D+ Sbjct: 1 ISTPPGEGAISIVRLSGDQAVQIADKVYQSGSKSLIEVPSHTIHYGHIIDPKSEQIIDEV 60 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 ++ V +P++FT ED E + HGGI VVN +L+ L RLA PGEF++RAF NG++D Sbjct: 61 MVSVMKAPKTFTREDVVEINCHGGIVVVNQLLQ-LVLREGARLAEPGEFTKRAFLNGRVD 119 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ DLI ++T+ L++ + G LS L ++ + +E ++D+ E +DV Sbjct: 120 LSQAEAVMDLIRAKTDRAMNLALNQLDGNLSHLIRTLRQEILETLAQVEVNIDYPEYDDV 179 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + ++K +L F++ I + K G+I+R G I+G N GKSSL N L +++ Sbjct: 180 EELTTKLLLEKANFVQKQIDQLLVTAKQGKILREGLSTAIIGRPNVGKSSLLNHLLREEK 239 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 AIVTDI GTTRDV+ +++ G +K+ DTA Sbjct: 240 AIVTDIAGTTRDVIEEYVNVRGVPLKLIDTA 270 >gi|157781591|gb|ABV72150.1| GTP-binding thiophene and furan oxidation protein [Enterococcus faecium] Length = 270 Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 97/272 (35%), Positives = 162/272 (59%), Gaps = 9/272 (3%) Query: 11 VSTGALPSAISIIRLSGPSCFQVCEFIC----KKKKPFPRKASLRYFFGLD---GRILDK 63 +ST AISI+RLSG Q+ + + K+ P ++ Y +D +++D+ Sbjct: 1 ISTPPGEGAISIVRLSGDQAVQLADKVYQSGNKRLSEVPSH-TIHYGHIVDPKSNQLVDE 59 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 ++ V +P++FT ED E + HGGI VVN IL+ L + RLA PGEF++RAF NG++ Sbjct: 60 VMVSVMRAPKTFTREDVVEINCHGGIVVVNQILQLLLR-EGARLAEPGEFTKRAFLNGRV 118 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL +AE++ DLI ++T+ L++ + G LS+L ++ + +E ++D+ E +D Sbjct: 119 DLSQAEAVMDLIRAKTDKAMGLALNQLDGNLSALIRSLRQEILETLAQVEVNIDYPEYDD 178 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 V+ ++K +L ++ I + ++ K G+++R G I+G N GKSSL N L +++ Sbjct: 179 VEELTTKLLLEKAQMIQQRIQALLATSKQGKVLREGLSTAIIGRPNVGKSSLLNHLLREE 238 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 AIVTDI GTTRDV+ +++ G +K+ DTA Sbjct: 239 KAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTA 270 >gi|225552070|ref|ZP_03773010.1| tRNA modification GTPase TrmE [Borrelia sp. SV1] gi|225371068|gb|EEH00498.1| tRNA modification GTPase TrmE [Borrelia sp. SV1] Length = 464 Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 142/467 (30%), Positives = 240/467 (51%), Gaps = 43/467 (9%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASL--------RYFFGLD 57 + I A++T L SA+ +IR SG S I K K F ++L Y + LD Sbjct: 9 DDIVALATPFLSSALCVIRSSGASS------ISKFSKIFSNHSALNSASGNTIHYGYILD 62 Query: 58 GR---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114 +D+ ++ ++ +P+SFTG+D+ E HG + + I++ K R+A PGEF+ Sbjct: 63 NENDCKVDEVVVCLYRAPKSFTGQDAIEVMAHGSVIGIKKIIDLFLK-SGFRMAEPGEFT 121 Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174 RAF KIDL +AE++ ++I ++T L++ +SG L + + S + Sbjct: 122 LRAFLAKKIDLTKAEAIHEIIFAKTNKTYSLAVNKLSGALFVKIDAIKKSILNFLSAVSV 181 Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234 LD+ +V + + IL K ++ I+ K+ E I +G +V+ G NAGKSS Sbjct: 182 YLDY----EVDDHEISIPFDLILSSKAELKKLINSYKVYEKIDHGVALVLAGSVNAGKSS 237 Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294 LFN KKD +IV+ PGTTRD + +L+G L + DTAG+R+ D+ VE+ GI+++ Sbjct: 238 LFNLFLKKDRSIVSSYPGTTRDYIEASFELDGILFNLFDTAGLRDADNFVERLGIEKSNS 297 Query: 295 EVENADLILLLKEINS---KKEISF----PKNIDFIFIGTKSDL-YSTYTEEYDH----- 341 ++ A L++ + +++S K + F N +F+ K DL + TEE+ Sbjct: 298 LIKEASLVIYVIDVSSNLTKDDFLFIDSNKSNSKILFVLNKIDLKINKSTEEFVRSKVLN 357 Query: 342 -----LISSFTGEGLEELINKIKSILSNKFKKLPFS--IPSHKRHLYHLSQTVRY-LEMA 393 +IS+ EG++ L +KI++++S + ++ I S R + L + L + Sbjct: 358 SSNLIMISTKNLEGIDILYDKIRALISYERVEIGLDDIIISSSRQMQLLEKAYALILNLL 417 Query: 394 SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 S ++ D++A + LG+ITG V E +LD +F FC+GK Sbjct: 418 SKIDRQVSYDMLAFDAYEIINCLGEITGEVSSEDVLDNMFKNFCLGK 464 >gi|15612410|ref|NP_224063.1| tRNA modification GTPase TrmE [Helicobacter pylori J99] gi|14195308|sp|Q9ZJG6|MNME_HELPJ RecName: Full=tRNA modification GTPase mnmE gi|4155957|gb|AAD06922.1| putative thiophene/furan oxidation protein [Helicobacter pylori J99] Length = 461 Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 142/455 (31%), Positives = 232/455 (50%), Gaps = 27/455 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A++T AISII++SG + + + + +K+ PR A + F DG +LDK L Sbjct: 14 DTIAAIATPLGKGAISIIKISGHNALNILKQLTQKQDFTPRYAYVCDIFS-DGVLLDKAL 72 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 +I F +P SFTGED E HG + IL+ + RLA GEFS++AF N K+DL Sbjct: 73 VIYFKAPYSFTGEDVCEIQCHGSPLLAQNILQACLNL-GARLAKAGEFSKKAFLNHKMDL 131 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 E E+ LI E E + GEL + + L + + E +D+SEE+ Sbjct: 132 SEIEASVQLILCEDESVLNALARQLKGELKIFIEEARNNLLKLLASSEVLIDYSEEDIPS 191 Query: 186 NFSSKEVLN---DILFLKNDISSHISQGKLGEIIRN-GYKIVILGHSNAGKSSLFNALAK 241 +F + N I K+ + +Q + RN G+ + I+G NAGKSSL NA+ Sbjct: 192 DFLKEVSFNLEKQIASFKDLLDFSNAQKQ-----RNKGHALSIVGKPNAGKSSLLNAMLL 246 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 ++ A+V+DI GTTRD + ++L+G+ V++ DTAGIRE+ D +E+ GI+++ +EN D+ Sbjct: 247 EERALVSDIKGTTRDTIEEVIELKGHKVRLIDTAGIRESADEIERLGIEKSLKSLENCDI 306 Query: 302 ILLLKEINS---KKEISFPKNID-----FIFIGTKSDLYSTYTEEYDHLISSFTGEGLEE 353 IL + +++ K++ + ++ I + K+DL E LE Sbjct: 307 ILGVFDLSKPLEKEDFNLMDTLNRTKKPCIVVLNKNDLAPKLELEILKSYLKIPYSILET 366 Query: 354 LINKIKSILSNKFKKLPFSIP----SHKRHLYHLSQTVRY----LEMASLNEKDCGLDII 405 K+ L + +K+ P +K L L+QT E+ + L++ Sbjct: 367 NTLNSKACLKDLSQKISEFFPKLDTQNKLLLTSLAQTTALENAITELQNAKSHLDTLELF 426 Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + ++ A +L +T + Q+LD +FS+FC+GK Sbjct: 427 SYHILSAIENLNLLTRPYETSQMLDSMFSEFCLGK 461 >gi|317010176|gb|ADU80756.1| tRNA modification GTPase TrmE [Helicobacter pylori India7] Length = 450 Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 145/457 (31%), Positives = 232/457 (50%), Gaps = 31/457 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A++T AISII++SG + + + + +K+ PR A + F +G +LDK L Sbjct: 3 DTIAAIATPLGKGAISIIKISGNNALNILKQLTQKQDFTPRYAYVCDIFS-NGVLLDKAL 61 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 +I F +P SFTGED E HG + IL+ + RLA GEFS++AF N K+DL Sbjct: 62 VIYFKAPYSFTGEDVCEIQCHGSPLLAQNILQACLNL-GARLAKAGEFSKKAFLNHKMDL 120 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 E E+ LI E E + GEL + L + + E +D+SEE+ Sbjct: 121 SEIEASVQLILCEDESVLNALARQLKGELKIFIEEARGNLLKLLASSEVLIDYSEEDIPS 180 Query: 186 NFSSKEVLN---DILFLKNDISSHISQGKLGEIIRN-GYKIVILGHSNAGKSSLFNALAK 241 +F + LN I K+ + +Q + RN G+ + I+G N GKSSL NA+ Sbjct: 181 DFLDEVSLNLEKQIASFKDLLDFSNAQKQ-----RNKGHALSIVGKPNTGKSSLLNAMLL 235 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 ++ A+V+DI GTTRD + ++L+G+ V++ DTAGIRE+ D +E+ GI+++ +EN D+ Sbjct: 236 EERALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRESADTIERLGIEKSLKSLENCDI 295 Query: 302 ILLLKEINSKKEISFPKNID--------FIFIGTKSDLYSTYTEEY--DHLISSFTGEGL 351 IL + +++ E ID I + K+DL E HL ++ L Sbjct: 296 ILGVFDLSKPLEKEDFNLIDTLNRAKKPCIVVLNKNDLAPKLELEVLKSHLKIPYS--IL 353 Query: 352 EELINKIKSILSNKFKKLPFSIP----SHKRHLYHLSQTVRY----LEMASLNEKDCGLD 403 E K+ L + +K+ P +K L L+Q +E+ + L+ Sbjct: 354 ETNTLNSKACLKDLSQKISAFFPKLDTQNKLLLTSLAQKTALENAIIELQNAQNHLETLE 413 Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + + +L A +L +T + Q+LD +FS+FC+GK Sbjct: 414 LFSYHLLSAIENLNLLTRPYETSQMLDSMFSEFCLGK 450 >gi|317060108|ref|ZP_07924593.1| thiophene and furan oxidation protein THDF [Fusobacterium sp. D12] gi|313685784|gb|EFS22619.1| thiophene and furan oxidation protein THDF [Fusobacterium sp. D12] Length = 390 Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 129/391 (32%), Positives = 219/391 (56%), Gaps = 22/391 (5%) Query: 68 VFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLE 127 + +P ++T ED E + HGG + ILE L RLA GEF+RRAF +G+IDL + Sbjct: 4 IMKAPNTYTREDIVEINCHGGYLITEKILE-LVLSSGARLAEVGEFTRRAFFHGRIDLTQ 62 Query: 128 AESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNF 187 AE++ D+I +TE +S+ + G+L + ++ + I LD+ EE ++ Sbjct: 63 AEAVMDIIHGKTEKSLSVSINQLRGDLKEKIISLKKAILNLAAHINVVLDYPEEG-IEEP 121 Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247 + +LN++ + +I IS + G++I+ G K VI+G N GKSSL N++ +++ AIV Sbjct: 122 IPENLLNNLRKVSIEIQELISSYQKGKMIKEGVKTVIIGKPNVGKSSLLNSILREERAIV 181 Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307 T + GTTRDV+ ++++G + + DTAGIR+T D VE G+ ++ ++ ADL+L + + Sbjct: 182 TQVAGTTRDVIEEVINIKGIPLILVDTAGIRDTTDFVENIGVMKSKEFLQKADLVLFVLD 241 Query: 308 IN---SKKE----ISFPKNIDFIFIGTKSDL-----YSTYTEEYDHL-ISSFTGEGLEEL 354 + SK++ IS +N I I K+DL S+ ++ + + +S+ G+EE+ Sbjct: 242 ASQELSKEDREIYISLQENQKVIGILNKTDLEKKIQVSSLSKIKNWIEVSAMKCIGIEEM 301 Query: 355 INKI-KSILSNKF----KKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENL 409 KI + IL K +KL + HK L + ++ + S E+ +D++A ++ Sbjct: 302 EEKIYQYILQEKVEENSQKLILTNIRHKAALEKTNGAIK--NIFSTVEQGLPMDLMAVDI 359 Query: 410 RLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + A SL +ITG + E +LD IF FC+GK Sbjct: 360 KEALDSLSEITGEISTEDVLDHIFHNFCVGK 390 >gi|157781583|gb|ABV72146.1| GTP-binding thiophene and furan oxidation protein [Enterococcus durans] Length = 270 Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 97/271 (35%), Positives = 162/271 (59%), Gaps = 7/271 (2%) Query: 11 VSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKA-SLRYFFGLDGR---ILDKG 64 +ST AISI+RLSG + + + C KK + ++ Y +D + ++D+ Sbjct: 1 ISTPPGEGAISIVRLSGDQAVALADKVYSCGKKSLLEVPSHTIHYGHIVDPKNEQLVDEV 60 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 ++ V +P++FT ED E + HGGI VVN IL+ L + RLA PGEF++RAF NG++D Sbjct: 61 MVSVILAPKTFTREDVVEINCHGGIVVVNQILQLLLR-EGARLAEPGEFTKRAFLNGRVD 119 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ DLI ++T+ L++ + G LS+L ++ + +E ++D+ E +DV Sbjct: 120 LSQAEAVMDLIRAKTDKAMGLALNQLDGNLSALIRSLRQEILETLAQVEVNIDYPEYDDV 179 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + ++K +L ++ I + ++ K G+++R G I+G N GKSSL N L +++ Sbjct: 180 EELTTKLLLEKATMIQERIQALLATSKQGKVLREGLSTAIIGRPNVGKSSLLNHLLREEK 239 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 AIVTDI GTTRDV+ +++ G +K+ DTA Sbjct: 240 AIVTDIAGTTRDVIEEYVNVRGVPLKLIDTA 270 >gi|157781567|gb|ABV72138.1| GTP-binding thiophene and furan oxidation protein [Enterococcus saccharolyticus] Length = 269 Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 95/270 (35%), Positives = 157/270 (58%), Gaps = 6/270 (2%) Query: 11 VSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG-----LDGRILDKGL 65 +ST AISI+RLSG + + + K K AS +G +++D+ + Sbjct: 1 ISTPPGEGAISIVRLSGDQAVTIADKVFKANKSLADVASHTINYGHLYDPQTEQLVDEVM 60 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 + V +P++FT ED E + HGGI VVN IL+ L + RLA PGEF++RAF NG++DL Sbjct: 61 VSVMRAPKTFTREDVIEINCHGGIVVVNQILQLLLRQ-GARLAEPGEFTKRAFLNGRVDL 119 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ DLI ++T+ L++ + G LS L ++ + +E ++D+ E +DV+ Sbjct: 120 SQAEAVMDLIRAKTDKAMNLALNQLDGNLSHLIRALRQEILETLAQVEVNIDYPEYDDVE 179 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 +++ ++ ++ I + + + G+I+R G I+G N GKSSL N L +++ A Sbjct: 180 EMTTRLLVEKATQVQAQIQALLQTAQQGKILREGLNTAIIGRPNVGKSSLLNHLLREEKA 239 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 IVTDI GTTRDV+ +++ G +K+ DTA Sbjct: 240 IVTDIAGTTRDVIEEYVNVRGVPLKLIDTA 269 >gi|328859150|gb|EGG08260.1| hypothetical protein MELLADRAFT_34988 [Melampsora larici-populina 98AG31] Length = 350 Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 108/309 (34%), Positives = 168/309 (54%), Gaps = 24/309 (7%) Query: 6 ETIFAVSTGA-LPSAISIIRLSGPSC----FQVCEFICKKK---------KPFPRKASLR 51 + IFA +T SA+SIIR+ GP Q+ I KK K PR A LR Sbjct: 39 QNIFAAATPTNSKSALSIIRVDGPQAAGLYHQMTSTISPKKHSNAPLHQSKLPPRTAKLR 98 Query: 52 YFFGLDGR-ILD-KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLAN 109 + LD + ++I FP +S + + EFH+HG A+ ++ L+++ N RLA Sbjct: 99 RIVDPSTKETLDPEAIVINFPH-QSTSTTSTFEFHLHGSPAITKSVILSLSRLSNFRLAQ 157 Query: 110 PGEFSRRAFENGKI------DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWID 163 PGEF++R +E I DL + +L +LI +ET+ QR+L++ G +Y Sbjct: 158 PGEFTQRRYERSMIRDQPEFDLNQLLALKNLIDAETDEQRKLAIHQFDGPFKQVYQSMRK 217 Query: 164 KLTHIRSFIEADLDFSEEEDVQNFS-SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI 222 L + EA +DFSE+ + + S K+V + + L++ I SH++ E + NG ++ Sbjct: 218 TLLESMALCEAIIDFSEDGSIDDESVWKQVSHKVQSLRSIIRSHLNDSNRHEKVLNGIRL 277 Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282 + G N GKS+L N L ++ +IV+ PGTTRDV+ I LD G+ + +SDTAG+R+T D Sbjct: 278 TLFGAPNVGKSTLLNWLVNREASIVSPHPGTTRDVIEISLDFHGFPIIVSDTAGLRDTQD 337 Query: 283 IVEKEGIKR 291 +E+ GI R Sbjct: 338 PIEEIGIDR 346 >gi|298735582|ref|YP_003728105.1| tRNA modification GTPase [Helicobacter pylori B8] gi|298354769|emb|CBI65641.1| tRNA modification GTPase [Helicobacter pylori B8] Length = 461 Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 147/470 (31%), Positives = 233/470 (49%), Gaps = 57/470 (12%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A++T AISII++SG + V + + +K+ PR A + F +G +LDK L Sbjct: 14 DTIAAIATPLGKGAISIIKISGNNALNVLKQLTQKQDFTPRYAYVCDIFS-NGVLLDKAL 72 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 I F +P SFTGED E HG + IL+ + RLA GEFS++AF N K+DL Sbjct: 73 AIYFKAPYSFTGEDVCEIQCHGSPLLAQNILQACLNL-GARLAKAGEFSKKAFLNHKMDL 131 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 E E+ LI E E + GEL + L + + E +D+SEE+ Sbjct: 132 SEIEASVQLILCEDESVLNALARQLKGELKIFIEEARGNLLKLLASSEVLIDYSEEDIPS 191 Query: 186 NFSSKEVLN---DILFLKNDISSHISQGKLGEIIRN-GYKIVILGHSNAGKSSLFNALAK 241 +F ++ LN I K+ + +Q + RN G+ + I+G NAGKSSL NA+ Sbjct: 192 DFLNEVSLNLEKQIASFKDLLDFSNAQKQ-----RNKGHALSIVGKPNAGKSSLLNAMLL 246 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 ++ A+V+DI GTTRD + ++L+G+ V++ DTAGIRE+ D +E+ GI+++ +EN D+ Sbjct: 247 EERALVSDIKGTTRDTIEEVIELKGHKVRLIDTAGIRESADKIERLGIEKSLKSLENCDI 306 Query: 302 ILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSI 361 IL + +++ E DF +L T I +L+ K++ Sbjct: 307 ILGVFDLSKPLEKE-----DF-------NLIDTLNRAKKPCIVVLNK---NDLVPKLELE 351 Query: 362 LSNKFKKLPFSI-----PSHKRHLYHLSQ----------TVRYLEMASLNEKDC------ 400 + + K+P+S+ + K L LSQ T L + SL +K Sbjct: 352 ILKSYLKIPYSLLETNTLNSKACLKDLSQKISTFFPKLDTQNKLLLTSLAQKTALENAIF 411 Query: 401 ----------GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L++ + +L A +L +T + Q+LD +FS+FC+GK Sbjct: 412 ELQNAKNHLETLELFSYHLLSAIENLNLLTRPYETSQMLDSMFSEFCLGK 461 >gi|157781581|gb|ABV72145.1| GTP-binding thiophene and furan oxidation protein [Enterococcus durans] Length = 270 Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 97/271 (35%), Positives = 162/271 (59%), Gaps = 7/271 (2%) Query: 11 VSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKA-SLRYFFGLDGR---ILDKG 64 +ST AISI+RLSG + + + C KK + ++ Y +D + ++D+ Sbjct: 1 ISTPPGEGAISIVRLSGDQAVALADKVYSCGKKSLLEVPSHTIHYGHIVDPKNEQLVDEV 60 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 ++ V +P++FT ED E + HGGI VVN IL+ L + RLA PGEF++RAF NG++D Sbjct: 61 MVSVMLAPKTFTREDVVEINCHGGIVVVNQILQLLLR-EGARLAEPGEFTKRAFLNGRVD 119 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ DLI ++T+ L++ + G LS+L ++ + +E ++D+ E +DV Sbjct: 120 LSQAEAVMDLIRAKTDKAMGLALNQLDGNLSALIRSLRQEILETLAQVEVNIDYPEYDDV 179 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + ++K +L ++ I + ++ K G+++R G I+G N GKSSL N L +++ Sbjct: 180 EELTTKLLLEKATMIQERIQALLATSKQGKVLREGLSTAIIGRPNVGKSSLLNHLLREEK 239 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 AIVTDI GTTRDV+ +++ G +K+ DTA Sbjct: 240 AIVTDIAGTTRDVIEEYVNVRGVPLKLIDTA 270 >gi|317182657|dbj|BAJ60441.1| tRNA modification GTPase TrmE [Helicobacter pylori F57] Length = 450 Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 142/456 (31%), Positives = 227/456 (49%), Gaps = 29/456 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A++T AIS+I++SG + + + + +K+ PR A + F +G +LDK L Sbjct: 3 DTIAAIATPLGKGAISVIKISGNNALNILKQLTQKQDFTPRYAYVHDIFS-NGALLDKAL 61 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 +I F +P SFTGED E HG + IL+ + RLA GEFS++AF N K+DL Sbjct: 62 VIYFKAPYSFTGEDVCEIQCHGNPLLAQNILQACLNL-GARLAKAGEFSKKAFLNHKMDL 120 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE--- 182 E E+ LI E E + GEL + L + + E +D+SEE+ Sbjct: 121 SEIEASVQLILCEDESVLNALARQLKGELKIFIEEARGNLLKLLASSEVLIDYSEEDIPS 180 Query: 183 DVQNFSSKEVLNDILFLKN--DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 D N S+ + I K+ D S+ Q G+ + I+G NAGKSSL NA+ Sbjct: 181 DFLNEVSQNLEKQIASFKDLLDFSNMQKQK------NKGHALSIVGKPNAGKSSLLNAML 234 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ A+V+DI GTTRD + ++L+G+ V++ DTAGIRE+ D +E+ GI+++ +EN D Sbjct: 235 LEERALVSDIKGTTRDTIEEVIELKGHKVRLIDTAGIRESADKIERLGIEKSLKSLENCD 294 Query: 301 LILLLKEINSKKEISFPKNID--------FIFIGTKSDLYSTYTEEYDHLISSFTGEGLE 352 +IL + +++ E ID I + K+DL E LE Sbjct: 295 IILGVFDLSKPLEQEDFNLIDTLNRAKKPCIVVLNKNDLAPKLELEILKSYLKIPYSLLE 354 Query: 353 ELINKIKSILSNKFKKLPFSIP----SHKRHLYHLSQTVRY----LEMASLNEKDCGLDI 404 K+ L + +K+ P +K L L+Q +E+ + L++ Sbjct: 355 TNTLNSKACLKDLSQKISAFFPKLDTQNKLLLTSLAQKTALENAIIELQNAKNHLETLEL 414 Query: 405 IAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + ++ A +L +T + Q+LD +FS+FC+GK Sbjct: 415 FSYHILSAIENLNLLTRPYETSQMLDSMFSEFCLGK 450 >gi|317179628|dbj|BAJ57416.1| tRNA modification GTPase TrmE [Helicobacter pylori F30] Length = 450 Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 143/465 (30%), Positives = 233/465 (50%), Gaps = 47/465 (10%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A++T AIS+I++SG + + + + +K+ PR A + F +G +LDK L Sbjct: 3 DTIAAIATPLGKGAISVIKISGNNALNILKQLTQKQDFTPRYAYVHDIFS-NGALLDKAL 61 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 +I F +P SFTGED E HG + IL+ + RLA GEFS++AF N K+DL Sbjct: 62 VIYFKAPYSFTGEDVCEIQCHGNPLLAQNILQACLNL-GARLAKAGEFSKKAFLNHKMDL 120 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE--- 182 E E+ LI E E + GEL + L + + E +D+SEE+ Sbjct: 121 SEIEASVQLILCEDESVLNALARQLKGELKIFIEEARGNLLKLLASSEVLIDYSEEDIPS 180 Query: 183 DVQNFSSKEVLNDILFLKN--DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 D N S+ + I K+ D S+ Q G+ + I+G NAGKSSL NA+ Sbjct: 181 DFLNEVSQNLEKQIASFKDLLDFSNMQKQK------NKGHALSIVGKPNAGKSSLLNAML 234 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ A+V+DI GTTRD + ++L+G+ V++ DTAGIRE+ D +E+ GI+++ +E+ D Sbjct: 235 LEERALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRESTDKIERLGIEKSLKSLESCD 294 Query: 301 LILLLKEINSKKEISFPKNID--------FIFIGTKSDL--------YSTYTEEYDHLIS 344 ++L + +++ E ID I + K+DL +Y + L+ Sbjct: 295 IVLGVFDLSKPLEKEDFNLIDTLNRAKKPCIVVLNKNDLAPKLELETLKSYLKIPHSLLE 354 Query: 345 SFT---GEGLEELINKIKSI---LSNKFKKLPFSIPSH---KRHLYHLSQTVRYLEMASL 395 + T L++L KI + L + K L S+ + ++ L +LE Sbjct: 355 TNTLNSKACLKDLSQKISAFFPKLDTQNKLLLTSLAQKTALENAIFELQNAKNHLET--- 411 Query: 396 NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L++ + +L A +L +T + Q+LD +FS+FC+GK Sbjct: 412 ------LELFSYHLLSAIENLNSLTRPYETSQMLDSMFSEFCLGK 450 >gi|157781609|gb|ABV72159.1| GTP-binding thiophene and furan oxidation protein [Enterococcus casseliflavus] Length = 270 Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 96/271 (35%), Positives = 155/271 (57%), Gaps = 7/271 (2%) Query: 11 VSTGALPSAISIIRLSGPSCFQVCEFICKK-KKPFPRKASLRYFFGL-----DGRILDKG 64 +ST ISI+RLSG + + I + K + S +G + R++D+ Sbjct: 1 ISTPPGEGPISIVRLSGEEAIAIADRIFQAGTKTLAQVPSHTIHYGHIVDPEENRLMDEV 60 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 +L V P +FT ED E + HGGI VVN +L+ L RLA PGEF++RAF NG++D Sbjct: 61 MLSVMKKPRTFTREDVVEINCHGGIVVVNQLLQ-LVLRQGARLAEPGEFTKRAFLNGRVD 119 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ DLI ++T+ L++ + G LS L ++ + +E ++D+ E +DV Sbjct: 120 LSQAEAVMDLIRAKTDKAMNLAVNQLDGNLSHLIRTLRQEILETLAQVEVNIDYPEYDDV 179 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + +++ +L +K I + ++ + G+I+R G I+G N GKSSL N L +++ Sbjct: 180 EELTTRLLLEKATMVKGQIQALLATAQQGKILREGLSTAIIGRPNVGKSSLLNHLLREEK 239 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 AIVTDI GTTRDV+ +++ G +K+ DTA Sbjct: 240 AIVTDIAGTTRDVIEEYVNVRGVPLKLIDTA 270 >gi|321311014|ref|YP_004193343.1| tRNA modification GTPase [Mycoplasma haemofelis str. Langford 1] gi|319802858|emb|CBY93504.1| tRNA modification GTPase [Mycoplasma haemofelis str. Langford 1] Length = 431 Score = 167 bits (422), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 138/449 (30%), Positives = 237/449 (52%), Gaps = 35/449 (7%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPR---KASLRYFFGLDGRILDK 63 TI A++T A+ +IR+SG F++ I P R + + + + +++D+ Sbjct: 3 TIVALATPPGIGALHVIRVSGSEAFEILNRI--SINPVLRTEDRIQVTFLKSRNNKLIDQ 60 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 +L F +P S+TGED E HG + I+EE+ K + A GEF++RAF N KI Sbjct: 61 VVLSKFYAPHSYTGEDCIEISCHGNSLISKLIIEEILKNGAVH-AKRGEFTKRAFLNNKI 119 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL +A S+ +L ++ +E + +E + G S L +I++L+ IRS E ++D+ + + Sbjct: 120 DLNQAISIGNLFAANSEGEIYSFVEEIKGATSKLIHSFIEELSSIRSECEMNIDYPPDIE 179 Query: 184 VQNFSSK---EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 V++ SK ++ I L + + + K ++ +G+++V++G NAGKSSL N L Sbjct: 180 VED--SKFIGDIQERISSLHSKLLFFLESSKKQKL--SGFRVVLVGRPNAGKSSLINHLI 235 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 KD IV+ GTTRD + +D + YL+ + DTAGI E DD + E I+R+ + +AD Sbjct: 236 GKDKIIVSPEAGTTRDTVEVDYQFDDYLLTLVDTAGIYEVDDFLTNESIRRSKDAIRDAD 295 Query: 301 LILLLKEINSKKEIS------FPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEEL 354 L++ L + KK + K++ IF TKSDL+ +T E + + S + E Sbjct: 296 LLVHLVSLEDKKNLKELVGEFGGKSVITIF--TKSDLF-PHTRESNCI--SVKNSEISEF 350 Query: 355 INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDIIAENLRLA 412 + +++ L + + + + HL+ + LE + +L+ LD+IAE+L A Sbjct: 351 LRLLRNHLKENYSSVGV---KSQEGINHLNNSCLELEKSLGALS-----LDLIAEHLNFA 402 Query: 413 SVSLGKITGC-VDVEQLLDIIFSKFCIGK 440 L +I G D + ++ +F FCIGK Sbjct: 403 HDHLCRIVGLQQDSFEKINYLFDNFCIGK 431 >gi|216263825|ref|ZP_03435819.1| tRNA modification GTPase TrmE [Borrelia afzelii ACA-1] gi|215979869|gb|EEC20691.1| tRNA modification GTPase TrmE [Borrelia afzelii ACA-1] Length = 464 Score = 167 bits (422), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 139/461 (30%), Positives = 239/461 (51%), Gaps = 31/461 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA--SLRYFFGLDGR---I 60 + I A++T L SA+ +IR SG S I A ++ Y + LD Sbjct: 9 DDIVALATPFLSSALCVIRSSGASSISKFSKIFSNHSALNSAAGNTIHYGYILDNENNCK 68 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+ ++ ++ +P+SFTG+D+ E HG + + I++ K R+A PGEF+ R+F Sbjct: 69 VDEVVVCLYRAPKSFTGQDAVEVIAHGSVIGIKKIIDLFLK-SGFRMAEPGEFTFRSFLA 127 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 KIDL +AE++ ++I ++T L++ +SG L + + S + LD+ Sbjct: 128 KKIDLTKAEAINEIIFAKTNKAYSLAVNKLSGALFVKIDTIKKCILNFLSAVSVYLDYEV 187 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 ++ + +LN + LK I S+ K+ E I +G +V+ G NAGKSSLFN Sbjct: 188 DDREIDIPFDLILNSKVELKKLIDSY----KVYEKIDHGITLVLAGSVNAGKSSLFNLFL 243 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 KKD +IV+ PGTTRD + +L+G L + DTAG+R+ D+ VE+ GI+++ ++ A Sbjct: 244 KKDRSIVSSYPGTTRDYIEASFELDGILFNLFDTAGLRDADNFVERLGIEKSNSLIKEAS 303 Query: 301 LILLLKEINS---KKEISF----PKNIDFIFIGTKSDL-YSTYTEEYDH----------L 342 L++ + +I+S + ++ F N +F+ K DL + TEE+ + Sbjct: 304 LVIYVIDISSNLTRDDLLFIDSNKSNSKILFVLNKIDLKINKSTEEFVRSSVLNSSNLIM 363 Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFS--IPSHKRHLYHLSQTVRY-LEMASLNEKD 399 IS EG++ L +KI++++S + ++ I S R + L + L++ S ++ Sbjct: 364 ISIKNLEGIDILYDKIRTLISYERVEIGLDDIIISSSRQIQLLEKAYALILDLLSKIDRQ 423 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D++A + LG+ITG V E +LD +F FC+GK Sbjct: 424 VSYDMLAFDAYEIINCLGEITGEVSSEDVLDNMFKNFCLGK 464 >gi|217033108|ref|ZP_03438572.1| hypothetical protein HPB128_27g15 [Helicobacter pylori B128] gi|216945181|gb|EEC23872.1| hypothetical protein HPB128_27g15 [Helicobacter pylori B128] Length = 450 Score = 167 bits (422), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 147/470 (31%), Positives = 233/470 (49%), Gaps = 57/470 (12%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A++T AISII++SG + V + + +K+ PR A + F +G +LDK L Sbjct: 3 DTIAAIATPLGKGAISIIKISGNNALNVLKQLTQKQDFTPRYAYVCDIFS-NGVLLDKAL 61 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 I F +P SFTGED E HG + IL+ + RLA GEFS++AF N K+DL Sbjct: 62 AIYFKAPYSFTGEDVCEIQCHGSPLLAQNILQACLNL-GARLAKAGEFSKKAFLNHKMDL 120 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 E E+ LI E E + GEL + L + + E +D+SEE+ Sbjct: 121 SEIEASVQLILCEDESVLNALARQLKGELKIFIEEARGNLLKLLASSEVLIDYSEEDIPS 180 Query: 186 NFSSKEVLN---DILFLKNDISSHISQGKLGEIIRN-GYKIVILGHSNAGKSSLFNALAK 241 +F ++ LN I K+ + +Q + RN G+ + I+G NAGKSSL NA+ Sbjct: 181 DFLNEVSLNLEKQIASFKDLLDFSNAQKQ-----RNKGHALSIVGKPNAGKSSLLNAMLL 235 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 ++ A+V+DI GTTRD + ++L+G+ V++ DTAGIRE+ D +E+ GI+++ +EN D+ Sbjct: 236 EERALVSDIKGTTRDTIEEVIELKGHKVRLIDTAGIRESADKIERLGIEKSLKSLENCDI 295 Query: 302 ILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSI 361 IL + +++ E DF +L T I +L+ K++ Sbjct: 296 ILGVFDLSKPLEKE-----DF-------NLIDTLNRAKKPCIVVLNK---NDLVPKLELE 340 Query: 362 LSNKFKKLPFSI-----PSHKRHLYHLSQ----------TVRYLEMASLNEKDC------ 400 + + K+P+S+ + K L LSQ T L + SL +K Sbjct: 341 ILKSYLKIPYSLLETNTLNSKACLKDLSQKISTFFPKLDTQNKLLLTSLAQKTALENAIF 400 Query: 401 ----------GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L++ + +L A +L +T + Q+LD +FS+FC+GK Sbjct: 401 ELQNAKNHLETLELFSYHLLSAIENLNLLTRPYETSQMLDSMFSEFCLGK 450 >gi|111115001|ref|YP_709619.1| tRNA modification GTPase TrmE [Borrelia afzelii PKo] gi|122956413|sp|Q0SNY5|MNME_BORAP RecName: Full=tRNA modification GTPase mnmE gi|110890275|gb|ABH01443.1| thiophene and furan oxidation protein [Borrelia afzelii PKo] Length = 464 Score = 167 bits (422), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 139/461 (30%), Positives = 239/461 (51%), Gaps = 31/461 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA--SLRYFFGLDGR---I 60 + I A++T L SA+ +IR SG S I A ++ Y + LD Sbjct: 9 DDIVALATPFLSSALCVIRSSGASSISKFSKIFSNHSALNSAAGNTIHYGYILDNENNCK 68 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+ ++ ++ +P+SFTG+D+ E HG + + I++ K R+A PGEF+ R+F Sbjct: 69 VDEVVVCLYRAPKSFTGQDAVEVIAHGSVIGIKKIIDLFLK-SGFRMAEPGEFTFRSFLA 127 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 KIDL +AE++ ++I ++T L++ +SG L + + S + LD+ Sbjct: 128 KKIDLTKAEAINEIIFAKTNKAYSLAVNKLSGALFVKIDTIKKCILNFLSAVSVYLDYEV 187 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 ++ + +LN + LK I S+ K+ E I +G +V+ G NAGKSSLFN Sbjct: 188 DDREIDIPFDLILNSKVELKKLIDSY----KVYEKIDHGITLVLAGSVNAGKSSLFNLFL 243 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 KKD +IV+ PGTTRD + +L+G L + DTAG+R+ D+ VE+ GI+++ ++ A Sbjct: 244 KKDRSIVSSYPGTTRDYIEASFELDGILFNLFDTAGLRDADNFVERLGIEKSNSLIKEAS 303 Query: 301 LILLLKEINS---KKEISF----PKNIDFIFIGTKSDL-YSTYTEEYDH----------L 342 L++ + +I+S + ++ F N +F+ K DL + TEE+ + Sbjct: 304 LVIYVIDISSNLTRDDLLFIDSNKSNSKILFVLNKIDLKINKSTEEFVRSSVLNSSNLIM 363 Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFS--IPSHKRHLYHLSQTVRY-LEMASLNEKD 399 IS EG++ L +KI++++S + ++ I S R + L + L++ S ++ Sbjct: 364 ISIKNLEGIDILYDKIRTLISYERVEIGLDDIIISSSRQIQLLEKAYALILDLLSKIDRQ 423 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D++A + LG+ITG V E +LD +F FC+GK Sbjct: 424 VSYDMLAFDAYEIINCLGEITGEVSSEDVLDNMFKNFCLGK 464 >gi|219685816|ref|ZP_03540625.1| tRNA modification GTPase TrmE [Borrelia garinii Far04] gi|219672649|gb|EED29679.1| tRNA modification GTPase TrmE [Borrelia garinii Far04] Length = 464 Score = 167 bits (422), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 143/473 (30%), Positives = 249/473 (52%), Gaps = 55/473 (11%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASL--------RYFFGLD 57 + I A++T L SA+ +IR SG S I K K F ++L Y + LD Sbjct: 9 DDIVALATPFLSSALCVIRSSGASS------ISKFSKIFSNHSALNSAPGNTIHYGYILD 62 Query: 58 GR---ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114 +D+ ++ ++ +P+SFTG+DS E HG + + I++ K R+A PGEF+ Sbjct: 63 NENNCKVDEVVVCLYRAPKSFTGQDSIEVIAHGSVIGIKKIIDLFLK-SGFRMAEPGEFT 121 Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGEL----SSLYGQWIDKLTHIRS 170 R+F KIDL +AE++ ++I ++T L++ +SG L ++ G ++ L+ + Sbjct: 122 LRSFLAKKIDLTKAEAINEIIFAKTNKTYSLAVNKLSGALFVKIDAIKGCILNFLSAVSV 181 Query: 171 FIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNA 230 +++ ++D E + +LN LK I+S+ K+ E I +G +V+ G N Sbjct: 182 YLDYEVDDHE----ISIPFDLILNSKAELKKLINSY----KVYEKIDHGVTLVLAGSVNV 233 Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIK 290 GKSSLFN KKD +IV+ PGTTRD + +L+G L + DTAG+R+ D+ VE+ GI+ Sbjct: 234 GKSSLFNMFLKKDRSIVSSYPGTTRDYIEASFELDGILFNLFDTAGLRDADNFVERLGIE 293 Query: 291 RTFLEVENADLILLLKEINS---KKEISF----PKNIDFIFIGTKSDL-YSTYTEEYDH- 341 ++ ++ A L++ + +++S +++ F N +F+ K DL + TEE+ Sbjct: 294 KSNSLIKEASLVIYVIDVSSNLTREDFLFIDSNKSNSKILFVLNKIDLNINKSTEEFVRS 353 Query: 342 ---------LISSFTGEGLEELINKIKSILSNKFKKLPFS----IPSHKRHLYHLSQTVR 388 +IS+ EG++ L +KIK+++S ++K+ I S R + L + Sbjct: 354 NVLNSSNLIMISTKNLEGIDILYDKIKTLIS--YEKVEIGLDDIIISSSRQMQLLEKAYA 411 Query: 389 -YLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L++ + ++ D++A + LG+ITG V E +LD +F FC+GK Sbjct: 412 LVLDLLNKIDRQVSYDMLAFDAYEIINCLGEITGEVSSEDVLDNMFKNFCLGK 464 >gi|71894377|ref|YP_278485.1| tRNA modification GTPase TrmE [Mycoplasma synoviae 53] gi|123644156|sp|Q4A647|MNME_MYCS5 RecName: Full=tRNA modification GTPase mnmE gi|71851165|gb|AAZ43774.1| tRNA modification GTPase ThdF/TrmE [Mycoplasma synoviae 53] Length = 463 Score = 166 bits (421), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 155/471 (32%), Positives = 244/471 (51%), Gaps = 39/471 (8%) Query: 1 MNHEK--ETIFAVSTGA-LPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRY-FFGL 56 MN++ +TI A+S+G + ISIIR+SG + + I K ++ Y F Sbjct: 1 MNYQSYSDTICAISSGNNINQPISIIRISGKNAQSIVSKIFSGK--VGENKTITYGFIKE 58 Query: 57 DGRILDKGLLIVF-PSPE-------SFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLA 108 + I+D+ L+ F P+ ++ GE E + HGG+ V N ILE L RLA Sbjct: 59 NSEIVDEVLVSWFLGEPQGDITVYNNYVGEPLIEINAHGGMIVTNKILELLIS-NGARLA 117 Query: 109 NPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHI 168 PGEF+RRAF NGK+DL +A+++ +LI S+T +Q R + G S + + +L+ + Sbjct: 118 EPGEFTRRAFLNGKLDLSKADAIHNLIMSKTRLQARNEASKLKGSASKVIKDLLKELSLL 177 Query: 169 RSFIEADLDFSE-----EEDVQNFSSKEVLNDILFLKNDISSHISQ-GKLGEIIRN---G 219 IE +D+ E EED++ +SKE +N L N + + + + K E N G Sbjct: 178 IGSIEVGIDYPEYIDDYEEDLK-ANSKEDIN--LTRINKLIARLEKIVKSSETALNYFEG 234 Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 K+ I+G N GKSSL N + K+D AIVT++ GTTRD++ L+ ++ KI DTAGIR+ Sbjct: 235 IKLAIVGKPNVGKSSLLNTMLKEDKAIVTNVAGTTRDIVEGIYYLDNFIFKIIDTAGIRK 294 Query: 280 TDDIVEKEGIKRTFLEVENADLIL-LLKEINSK-------KEISFPKNIDFIFIGTKSDL 331 T +EK GI+R++ + +AD++L L +NS+ K+I N ++I + KSDL Sbjct: 295 TRQEIEKIGIERSYKAILDADIVLHLFDNLNSEDEFDLDIKKIVQENNKNYIKVVNKSDL 354 Query: 332 YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391 S D + S ++ L + + I S F I + R + +++ Y Sbjct: 355 KSDIKWSDDFIKISAKNNDIKNLEDHLLKIYSG-FDFNSEDIFATARQIKLFKESLEY-A 412 Query: 392 MASLNEKDCGLDIIAENLRLASV--SLGKITGCVDVEQLLDIIFSKFCIGK 440 A+ E L I + L ++ +L I G + E LLD +F FC+GK Sbjct: 413 YAAREEIKNQLTYITAIVDLNNLFDTLQLIIGNSNREDLLDEMFKNFCLGK 463 >gi|15646061|ref|NP_208243.1| tRNA modification GTPase TrmE [Helicobacter pylori 26695] gi|14195258|sp|O25991|MNME_HELPY RecName: Full=tRNA modification GTPase mnmE gi|2314627|gb|AAD08492.1| thiophene and furan oxidizer (tdhF) [Helicobacter pylori 26695] Length = 461 Score = 166 bits (420), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 143/455 (31%), Positives = 228/455 (50%), Gaps = 27/455 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A++T AISII++SG + + + + +K+ PR A + F +G +LDK L Sbjct: 14 DTIAAIATPLGKGAISIIKISGHNALNILKQLTQKQDFTPRYAYVHDIFS-NGVLLDKAL 72 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 +I F +P SFTGED E HG + IL+ + RLA GEFS++AF N K+DL Sbjct: 73 VIYFKAPYSFTGEDVCEIQCHGSPLLAQNILQACLNL-GARLAKAGEFSKKAFLNHKMDL 131 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 E E+ LI E E + GEL + L + + E +D+SEE+ Sbjct: 132 SEIEASVQLILCEDESVLNALARQLKGELKIFIEEARGNLLKLLASSEVLIDYSEEDIPS 191 Query: 186 NFSSKEVLN---DILFLKNDISSHISQGKLGEIIRN-GYKIVILGHSNAGKSSLFNALAK 241 +F LN I K+ + +Q + RN G+ + I+G NAGKSSL NA+ Sbjct: 192 DFLDGVSLNLEKQIASFKDLLDFSNAQKQ-----RNKGHALSIVGKPNAGKSSLLNAMLL 246 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 ++ A+V+DI GTTRD + ++L+G+ V++ DTAGIRE+ D +E+ GI+++ +EN D+ Sbjct: 247 EERALVSDIKGTTRDTIEEVIELKGHKVRLIDTAGIRESADKIERLGIEKSLKSLENCDI 306 Query: 302 ILLLKEINSKKEISFPKNID--------FIFIGTKSDLYSTYTEEYDHLISSFTGEGLEE 353 IL + +++ E ID I + K+DL E LE Sbjct: 307 ILGVFDLSKPLEKEDFNLIDTLNRAKKPCIVVLNKNDLAPKLELEILKSYLKIPYTLLET 366 Query: 354 LINKIKSILSNKFKKLPFSIP----SHKRHLYHLSQTVRY----LEMASLNEKDCGLDII 405 K+ L + +K+ P +K L L+Q + E+ + L++ Sbjct: 367 NTLNSKACLKDLSQKISAFFPKLDTQNKLLLTSLAQKIALENAITELQNAKNHLETLELF 426 Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + ++ A +L +T + Q+LD +FS+FC+GK Sbjct: 427 SYHILSAIENLNLLTRPYETSQMLDSMFSEFCLGK 461 >gi|213021691|ref|ZP_03336138.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 309 Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 108/310 (34%), Positives = 170/310 (54%), Gaps = 22/310 (7%) Query: 150 MSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQ 209 + G S+ ++ LTH+R ++EA +DF +EE + S ++ + + D+ + ++ Sbjct: 3 LQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE-IDFLSDGKIEAQLNGVIADLDAVRTE 61 Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269 + G ++R G K+VI G NAGKSSL NALA ++ AIVTDI GTTRDVL + ++G + Sbjct: 62 ARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPL 121 Query: 270 KISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS-----------FPK 318 I DTAG+R+ +D VE+ GI+R + E+E AD +L + + + + PK Sbjct: 122 HIIDTAGLRDANDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPADIWPDFIARLPK 181 Query: 319 NIDFIFIGTKSDLYSTY---TEEYDH---LISSFTGEGLEELINKIKSILSNKFKKLPFS 372 N+ + K+D+ +E H +S+ TGEG++ L N +K + + Sbjct: 182 NLPITVVRNKADITGETLGISEVNGHSLVRLSARTGEGVDVLRNHLKQSMGFD-TNMEGG 240 Query: 373 IPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLD 430 + +RHL L++ +LE A L G +++AE LRLA SL +ITG + LL Sbjct: 241 FLARRRHLQALAEAANHLEQGKAQLLGAWAG-ELLAEELRLAQQSLSEITGEFTSDDLLG 299 Query: 431 IIFSKFCIGK 440 IFS FCIGK Sbjct: 300 RIFSSFCIGK 309 >gi|91202839|emb|CAJ72478.1| similar to universal bacterial GTPase ThdF/TrmE [Candidatus Kuenenia stuttgartiensis] Length = 468 Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 147/476 (30%), Positives = 248/476 (52%), Gaps = 53/476 (11%) Query: 5 KETIFAVSTGALPSAISIIRLSG----PSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 ++TI V+T A S ++IR+SG PS ++ F+ +L+ F + G I Sbjct: 6 QDTILTVATPAGRSFHAVIRVSGSEAIPSIHEI--FVPSANIKL---ENLQTFVSIKGCI 60 Query: 61 L-------DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP-----NLRLA 108 +L V P S+T ED E H GG + IL+ + + LRL+ Sbjct: 61 CLPAESLKIPAVLYVMRQPHSYTKEDIVEIHTLGGRPIGEMILQYILQKKEGLKDGLRLS 120 Query: 109 NPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHI 168 PGEF++RAF +G+IDL +AE++ +LI S+++ + L++ +SG S +K+T + Sbjct: 121 RPGEFTKRAFLHGRIDLAQAEAIKNLIRSQSDSELDLAILQLSGNASLRIKDIQNKITSL 180 Query: 169 RSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHS 228 ++IE +DFS++ D++ S E++N + ++NDI + +++ +I + V+ G Sbjct: 181 CTYIEMSIDFSDQ-DIELISRMEMINKMEDIRNDIVNLMNKPLTDKISSEEIRTVLYGKP 239 Query: 229 NAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEG 288 N GKSSL NAL + AIV+D PGTTRD++T L++ K++D AG E + V + Sbjct: 240 NVGKSSLINALLGEKRAIVSDRPGTTRDMVTGVLEIGSVCFKLTDIAGFDEAREPVFLQA 299 Query: 289 IKRTFLEVENADLILLLKEINSKKEI-SFPKN-----IDFIFIGTKSDLY---------- 332 ++ +++A L+LL+ N K +I S N + I + K DL Sbjct: 300 REKAQGALKSAHLLLLVFAGNEKMDIQSLEINHSEVANNVIVVVNKCDLMPESSSFELPE 359 Query: 333 --STYTEEYDHLISSFTGEGLEELINKIKSILSNKF--KKLPFSIPSHKRHLYH---LSQ 385 YT Y +S+ TGEGLE ++K+++ +K ++ S H ++Y + + Sbjct: 360 EVKKYTVVY---VSALTGEGLE----RLKTLMFDKVLAGQIERSNTLHFFNVYQKDAMQR 412 Query: 386 TVRYLEMASLNEKDCGLD-IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + +E A + +D D IA +LR+A LG++ G + E +LD IF +FCIGK Sbjct: 413 SYERIEQAIASFRDTMSDEFIAMDLRMAVDILGEVVGEITTEDILDKIFQEFCIGK 468 >gi|157781593|gb|ABV72151.1| GTP-binding thiophene and furan oxidation protein [Enterococcus ratti] Length = 270 Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 93/271 (34%), Positives = 162/271 (59%), Gaps = 7/271 (2%) Query: 11 VSTGALPSAISIIRLSGPSCFQVCEFICKK-KKPFPRKASLRYFFG-----LDGRILDKG 64 +ST AISI+RLSG ++ + + + KK + S +G + +++D+ Sbjct: 1 ISTPPGEGAISIVRLSGDQAVRLADKVYRGGKKSLSQVPSHTIHYGHIVDPKNQQVIDEV 60 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 ++ + +P++FT ED E + HGG+ VVN IL+ L + RLA PGEF++RAF NG++D Sbjct: 61 MVSIMLAPKTFTREDVVEINCHGGMIVVNQILQLLLR-EGARLAEPGEFTKRAFLNGRVD 119 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ DLI ++T+ L++ + G LS+L ++ + +E ++D+ E +DV Sbjct: 120 LSQAEAVMDLIRAKTDKAIDLALNQLDGNLSALIRSLRQEILETLAQVEVNIDYPEYDDV 179 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + +++ +L ++ I + ++ K G+++R G I+G N GKSSL N L +++ Sbjct: 180 EELTTRLLLEKATMIQRSIQTLLATSKQGKVLREGLSTAIIGRPNVGKSSLLNYLLQEEK 239 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 AIVTDI GTTRDV+ +++ G +K+ DTA Sbjct: 240 AIVTDIAGTTRDVIEEYVNVRGVPLKLIDTA 270 >gi|203284100|ref|YP_002221840.1| thiophene and furan oxidation protein [Borrelia duttonii Ly] gi|226704780|sp|B5RL05|MNME_BORDL RecName: Full=tRNA modification GTPase mnmE gi|201083543|gb|ACH93134.1| thiophene and furan oxidation protein [Borrelia duttonii Ly] Length = 464 Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 143/473 (30%), Positives = 238/473 (50%), Gaps = 49/473 (10%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPF--PRKA------SLRYFF 54 +++ I A++T SA+ +IR SG S + K K F P K ++ Y + Sbjct: 6 QKEDDIVALATPFFSSALCVIRSSGVSAIE------KFSKMFSDPSKLLEASGHTIHYGY 59 Query: 55 GLDGRI---LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPG 111 LD LD+ ++ ++ +P+SFTG+DS E HG + + I++ K+ R+A PG Sbjct: 60 ILDNETKEKLDEVVVCLYRAPKSFTGQDSIEVMAHGSLIGIRRIIDFFLKV-GFRMAEPG 118 Query: 112 EFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSF 171 EF+ R+F GK+DL +AE++ +LIS++T L++ +SG L + + S Sbjct: 119 EFTLRSFLAGKLDLTKAEAINELISAKTRQVHALAVNKLSGSLFDKIDLIKKDILNFLSA 178 Query: 172 IEADLDFSEEEDVQNFSSKEVL---NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHS 228 I LD+ +++ EV+ + IL K+++ I + NG +V+ G Sbjct: 179 ISVYLDYETDDN-------EVVIPVDIILKSKSELERLIDSYDTARKLENGVTLVLAGSV 231 Query: 229 NAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEG 288 N GKSSLFN L K+D AIV+ GTTRD + + +G L + DTAG+RET D VE+ G Sbjct: 232 NVGKSSLFNLLLKEDRAIVSSYAGTTRDYIQASFEFDGILFNVFDTAGLRETSDFVEQLG 291 Query: 289 IKRTFLEVENADLILLLKEINSKKEISFPKNID-------FIFIGTKSDL-YSTYTEEYD 340 I R+ ++ A LI + +++ K K ID +F+ K DL + T E+ Sbjct: 292 IVRSNSLIKEASLIFYVVDLSGKLTDDDLKFIDAYKEDSRVLFVLNKVDLEQNNQTVEFF 351 Query: 341 H----------LISSFTGEGLEELINKIKSILSNKFKKLP---FSIPSHKRHLYHLSQTV 387 + IS+ T G+ L ++I+S+++ + K I S ++ Sbjct: 352 NSNNVVSLNTVKISTKTLFGINSLYDRIRSLIAVDYMKTSDYDVVISSTRQAELLKRAYA 411 Query: 388 RYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +E+ S E++ D++A ++ LG+ITG V + +LD +F FC+GK Sbjct: 412 LIIELLSKIEQNISYDMLAFDVYEVVNVLGEITGEVTSDDVLDNMFKNFCLGK 464 >gi|109946790|ref|YP_664018.1| tRNA modification GTPase TrmE [Helicobacter acinonychis str. Sheeba] gi|122973443|sp|Q17ZA7|MNME_HELAH RecName: Full=tRNA modification GTPase mnmE gi|109714011|emb|CAJ99019.1| thiophene and furan oxidizer [Helicobacter acinonychis str. Sheeba] Length = 450 Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 146/458 (31%), Positives = 234/458 (51%), Gaps = 33/458 (7%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI AV+T AISI+++SG + + + + KK+ PR A + F + +LDK L Sbjct: 3 DTIAAVATPLGKGAISIVKISGNNALNILKQLTKKQDFTPRYAYVCDIFS-NNILLDKAL 61 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 I F +P SFTGED E HG + IL+ + RLA GEFS++AF N K+DL Sbjct: 62 AIYFKAPYSFTGEDVCEIQCHGSPLLTQNILQACLNL-GARLAQAGEFSKKAFLNHKMDL 120 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 E E+ LI E E + GEL + + L + + E +D+SEE+ Sbjct: 121 SEIEASIRLILCEDESVLNALARQLKGELKIFIEEARNNLLKLLASSEVLIDYSEEDIPS 180 Query: 186 NFSSKEVLNDI-LFLKNDISSH---ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 +F LN++ L L+ I+S + + + G+ + I+G NAGKSSL NA+ Sbjct: 181 DF-----LNEVSLSLEKQIASFKDLLDFSNMQKQKNKGHALSIIGKPNAGKSSLLNAMLL 235 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 ++ A+V+DI GTTRD + ++L+G+ V++ DTAGIRE+ D +E+ GI+++ +EN D+ Sbjct: 236 EERALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRESVDKIERLGIEKSLKSLENCDI 295 Query: 302 ILLLKEINSKKEISFPKNID--------FIFIGTKSDLYSTYTEEY--DHLISSFTGEGL 351 IL + +++ E ID I + K+DL E HL ++ L Sbjct: 296 ILSVFDLSKPLEKEDFNIIDALNRTKKPCIVVLNKNDLSPKLELEVLKSHLQIPYS--ML 353 Query: 352 EELINKIKSILSNKFKKLPFSIP----SHKRHLYHLSQTVRYLEMASLNEKDC-----GL 402 E K+ L + +K+ P +K L L+Q LE A ++ L Sbjct: 354 ETNTLNSKACLKDLSQKISAFFPKLDTQNKLLLTSLAQK-NALENAITELQNAKNHLETL 412 Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++ + ++ A +L +T + Q+LD +FS+FC+GK Sbjct: 413 ELFSYHILSAIENLNLLTRPYETSQMLDSMFSEFCLGK 450 >gi|157781565|gb|ABV72137.1| GTP-binding thiophene and furan oxidation protein [Enterococcus sulfureus] Length = 270 Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 98/271 (36%), Positives = 159/271 (58%), Gaps = 7/271 (2%) Query: 11 VSTGALPSAISIIRLSGPSCFQVCEFICKK-KKPFPRKASLRYFFG-----LDGRILDKG 64 +ST AISI+RLSG ++ + + K K AS +G D +++D+ Sbjct: 1 ISTPPGEGAISIVRLSGDQAVEIADRVFKAGSKQLVNVASHTIHYGHIVDPKDDKLMDEV 60 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 ++ V +P++FT ED E + HGGI VVN +L+ L + RLA PGEF++RAF NG++D Sbjct: 61 MVSVMRAPKTFTREDVIEINCHGGIVVVNQLLQLLLRQ-GARLAEPGEFTKRAFLNGRVD 119 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ DLI ++T+ L++ + G LS L ++ + +E ++D+ E +DV Sbjct: 120 LSQAEAVMDLIRAKTDKAMNLALNQLDGNLSHLIRALRQEILETLAQVEVNIDYPEYDDV 179 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + +++ +L +K I S + + G+I+R G I+G N GKSSL N L +++ Sbjct: 180 EEMTTRLLLEKATQVKAQIESLLQTAQQGKILREGLDTAIIGRPNVGKSSLLNHLLREEK 239 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 AIVTDI GTTRDV+ +++ G +K+ DTA Sbjct: 240 AIVTDIAGTTRDVIEEYVNVRGVPLKLVDTA 270 >gi|145347727|ref|XP_001418313.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144578542|gb|ABO96606.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 525 Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 127/422 (30%), Positives = 206/422 (48%), Gaps = 34/422 (8%) Query: 47 KASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLR 106 KA+ DG I+D+ + + F +P S+T ED E H HGG V + R Sbjct: 110 KATYGVVVDGDGEIIDEVIALAFIAPRSYTAEDVVELHCHGGAVCVQRAMARCLD-EGAR 168 Query: 107 LANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLT 166 LA GEF+ RAF NG++DL +AE++ L+S++T ++ M G L++ + Sbjct: 169 LARNGEFTLRAFLNGRLDLTQAEAVHALVSAKTTAAADSALAAMRGGLTTPVSEARRACV 228 Query: 167 HIRSFIEADLDFSEEE---DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIV 223 + + +EA LDF +E DV+ +K + I ++ K G ++ G + Sbjct: 229 DLLAELEARLDFDDEMVPLDVRAIEAKAA-----GARETIRKVLTTAKRGALLETGVTVA 283 Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDD 282 I+G N GKS L NAL + + +IVT GTTRDV+ +++ G + DTAGIR ETDD Sbjct: 284 IVGRPNVGKSRLLNALTRSERSIVTSREGTTRDVVEASVNIGGLPATLLDTAGIRSETDD 343 Query: 283 IVEKEGIKRTFLEVENADLILLLKEINS----------KKEISFPKNI--DFIFIGTKSD 330 VEK G++R+ AD+++L+ + + EI+ + + K+D Sbjct: 344 EVEKIGVERSRAAAAGADIVVLVVDAERGWVSEDSAIWQSEIANNARARGSSVLVVNKTD 403 Query: 331 L--YSTYTEEYDHL--------ISSFTGEGLEELINKI-KSILSNKFKKLPFSIPSHKRH 379 + S T + L +S+ TG+ LE L + I +++ + + +++R Sbjct: 404 IADASNATPPPEVLESFSTVVHVSAATGDNLEHLEHAIVRTVSGGEVDAEGGAWAANQRQ 463 Query: 380 LYHLSQTVRYLE-MASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCI 438 L + L+ + D LD +LR A+ +LG +TG E +LD IF +FCI Sbjct: 464 AEALQNALDSLDRLRDTIAADMPLDFWTIDLREAAFALGSVTGDDVTEDVLDTIFERFCI 523 Query: 439 GK 440 GK Sbjct: 524 GK 525 >gi|317014865|gb|ADU82301.1| tRNA modification GTPase TrmE [Helicobacter pylori Gambia94/24] Length = 450 Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 140/455 (30%), Positives = 232/455 (50%), Gaps = 27/455 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A++T AISII++SG + + + + +K+ PR A + F +G +LDK L Sbjct: 3 DTIAAIATPLGKGAISIIKISGHNALNILKQLTQKQDFTPRYAYVCDIFS-NGVLLDKAL 61 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 +I F +P SFTGED E HG + IL+ + RLA GEFS++AF N K+DL Sbjct: 62 VIYFKAPYSFTGEDVCEIQCHGSPLLAQNILQACLNL-GARLAKAGEFSKKAFLNHKMDL 120 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 E E+ LI E E + GEL + + L + + E +D+SEE+ Sbjct: 121 SEIEASVQLILCEDESVLNALARQLKGELKIFIEEARNNLLKLLASSEVLIDYSEEDIPS 180 Query: 186 NFSSKEVLN---DILFLKNDISSHISQGKLGEIIRN-GYKIVILGHSNAGKSSLFNALAK 241 +F + N I K+ + +Q + RN G+ + I+G NAGKSSL NA+ Sbjct: 181 DFLKEVSFNLEKQIASFKDLLDFSNAQKQ-----RNKGHALSIVGKPNAGKSSLLNAMLL 235 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 ++ A+V++I GTTRD + ++L+G+ V++ DTAGIRE+ D +E+ GI+++ +EN D+ Sbjct: 236 EERALVSNIKGTTRDTIEEVIELKGHKVRLIDTAGIRESADEIERLGIEKSLKSLENCDI 295 Query: 302 ILLLKEINS---KKEISFPKNID-----FIFIGTKSDLYSTYTEEYDHLISSFTGEGLEE 353 IL + +++ K++ + ++ I + K+DL E LE Sbjct: 296 ILGVFDLSKPLEKEDFNLMDTLNRAKKPCIVVLNKNDLVPKLELEILKSYLKIPYSILET 355 Query: 354 LINKIKSILSNKFKKLPFSIP----SHKRHLYHLSQTVRY----LEMASLNEKDCGLDII 405 K+ L + +K+ P +K L L+QT E+ + L++ Sbjct: 356 NTLNSKACLKDLSQKISEFFPKLDTQNKLLLTSLAQTTALENAITELQNAKSHLETLELF 415 Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + ++ A +L +T + Q+LD +FS+FC+GK Sbjct: 416 SYHVLSAIENLNSLTRPYETSQMLDSMFSEFCLGK 450 >gi|157781613|gb|ABV72161.1| GTP-binding thiophene and furan oxidation protein [Enterococcus cecorum] Length = 270 Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 96/271 (35%), Positives = 158/271 (58%), Gaps = 7/271 (2%) Query: 11 VSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKA-SLRYFFGLDGR---ILDKG 64 +ST AIS++RLSG ++ + F+ KKK + ++ Y D + LD+ Sbjct: 1 ISTAPGEGAISMVRLSGSQALEIADEIFVAGKKKLSQVDSHTIHYGHIYDDKREGFLDEV 60 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 ++ V +P++FT ED E + HGG+ V N IL+ L RLA PGEF++RAF NG+ID Sbjct: 61 MVSVLKAPKTFTREDIIEINCHGGMVVTNQILQ-LVLRKGARLAEPGEFTKRAFLNGRID 119 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ DLI ++T+ +++ + + G LS+L ++ + +E ++D+ E +DV Sbjct: 120 LSQAEAVMDLIQAKTDQSMQMAYQQLEGRLSTLIKSLRQEILETLAQVEVNIDYPEYDDV 179 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + +S+ +L ++ I + G+I+R G + I+G N GKSSL N L ++ Sbjct: 180 EEMTSQLMLTTAKHIEEKIEQLLKTATQGKILREGLQTAIIGRPNVGKSSLLNYLLDEEK 239 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 AIVTDI GTTRDV+ +++ G +K+ DTA Sbjct: 240 AIVTDIAGTTRDVIEEYVNVNGVPLKLIDTA 270 >gi|157781597|gb|ABV72153.1| GTP-binding thiophene and furan oxidation protein [Enterococcus gallinarum] gi|157781599|gb|ABV72154.1| GTP-binding thiophene and furan oxidation protein [Enterococcus gallinarum] Length = 270 Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 96/271 (35%), Positives = 157/271 (57%), Gaps = 7/271 (2%) Query: 11 VSTGALPSAISIIRLSGPSCFQVCEFI---CKKKKPFPRKASLRYFFGLDG---RILDKG 64 +ST AISI+RLSG + + + KKK ++ Y D +++D+ Sbjct: 1 ISTPPGEGAISIVRLSGEQAISIADAVFQSGKKKLIDVSSHTIHYGHIFDPEKYQMMDEV 60 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 ++ + P++FT ED E + HGGI VVN IL+ L RLA PGEF++RAF NG++D Sbjct: 61 MVSIMRKPKTFTREDIVEINCHGGIVVVNQILQ-LVLRQGARLAEPGEFTKRAFLNGRVD 119 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ DLI ++T+ L++ + G LS L Q ++ + +E ++D+ E +DV Sbjct: 120 LSQAEAVMDLIRAKTDKAMNLAINQLDGNLSRLIRQLRQEILETLAQVEVNIDYPEYDDV 179 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + +++ +L ++ I + + + G+I+R G I+G N GKSSL N L +++ Sbjct: 180 EELTTRLLLEKANQVQKQIQALLQTAQQGKILREGLSTAIIGRPNVGKSSLLNHLLREEK 239 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 AIVTDI GTTRDV+ +++ G +K+ DTA Sbjct: 240 AIVTDIAGTTRDVIEEYVNVRGVPLKLVDTA 270 >gi|187918053|ref|YP_001883616.1| tRNA modification GTPase TrmE [Borrelia hermsii DAH] gi|119860901|gb|AAX16696.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase [Borrelia hermsii DAH] Length = 464 Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 144/472 (30%), Positives = 237/472 (50%), Gaps = 47/472 (9%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA--SLRYFFGLDGRI 60 ++ I A++T L SA+ +IR SG S I K ++ Y + +D Sbjct: 6 QREDDIVALATPFLSSALCVIRSSGVSSIDKFSKIFSDPKRLLEAPGHTIHYGYIIDKET 65 Query: 61 ---LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 LD+ ++ ++ +P+SFTG+DS E HG + + I++ K+ R+A PGEF+ R+ Sbjct: 66 CEKLDEVVVCLYRAPKSFTGQDSIEVMAHGSLIGIKRIIDFFLKV-GFRMAEPGEFTLRS 124 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F GK+DL +AE++ +LIS++T L++ +SG L + + + S + LD Sbjct: 125 FLAGKLDLTKAEAVNELISAKTNKTHALAVNNLSGSLFTKIDLIKKDILNFLSALSVHLD 184 Query: 178 FSEEE-------DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNA 230 + +E DV + S E LK I S+ + KL +G +V+ G N Sbjct: 185 YETDEYEVVIPFDVISKSRDE-------LKRLIDSYDTARKLD----HGITLVLAGSVNV 233 Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIK 290 GKSSLFN L K+D AIV+ GTTRD + +L+G L + DTAG+RET D VE+ GI Sbjct: 234 GKSSLFNLLLKEDRAIVSSYAGTTRDYIQASFELDGILFNVFDTAGLRETSDFVEQLGIV 293 Query: 291 RTFLEVENADLILLLKEINSKKEISFPKNID-------FIFIGTKSDLYSTYTEEYDHL- 342 R+ ++ A L+L + +++++ K ID +F+ K DL ++ D Sbjct: 294 RSNSLIKEASLVLYVIDLSARLTNDDLKFIDSYMGHSKVLFVLNKMDLEQD-SQTVDFFN 352 Query: 343 -----------ISSFTGEGLEELINKIKSILSNKFKKLPFS--IPSHKRHLYHLSQTVRY 389 IS+ T G++ L +KI+S+ + + I S R + L + Sbjct: 353 SGNINSSNLVKISTKTLFGIDSLYDKIRSLTCFDYIDINAYDVIVSSSRQVELLKKAYTL 412 Query: 390 -LEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +E+ + E+D D++A ++ LG+ITG V E +L+ +F FC+GK Sbjct: 413 IIELLNKIEQDISYDMLAFDVYEVINLLGEITGEVTSEDVLNNMFKNFCLGK 464 >gi|157781601|gb|ABV72155.1| GTP-binding thiophene and furan oxidation protein [Enterococcus gallinarum] Length = 270 Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 95/271 (35%), Positives = 157/271 (57%), Gaps = 7/271 (2%) Query: 11 VSTGALPSAISIIRLSGPSCFQVCEFI---CKKKKPFPRKASLRYFFGLDG---RILDKG 64 +ST AISI+RLSG + + + KKK ++ Y D +++D+ Sbjct: 1 ISTPPGEGAISIVRLSGEQAISIADAVFQSGKKKLIDVSSHTIHYGHIFDPEKYQMMDEV 60 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 ++ + P++FT ED E + HGGI VVN IL+ L RLA PGEF++RAF NG++D Sbjct: 61 MVSIMRKPKTFTREDVVEINCHGGIVVVNQILQ-LVLRQGARLAEPGEFTKRAFLNGRVD 119 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ DLI ++T+ L++ + G LS L Q ++ + +E ++D+ E +DV Sbjct: 120 LSQAEAVMDLIRAKTDKAMNLAINQLDGNLSRLIRQLRQEILETLAQVEVNIDYPEYDDV 179 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + +++ +L ++ I + + + G+I+R G I+G N GKSSL N L +++ Sbjct: 180 EELTTRLLLEKANQVQKQIQALLQTAQQGKILREGLSTAIIGRPNVGKSSLLNHLLREEK 239 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 AIVTDI GTTRD++ +++ G +K+ DTA Sbjct: 240 AIVTDIAGTTRDIIEEYVNVRGVPLKLVDTA 270 >gi|317011582|gb|ADU85329.1| tRNA modification GTPase TrmE [Helicobacter pylori SouthAfrica7] Length = 450 Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 150/479 (31%), Positives = 232/479 (48%), Gaps = 75/479 (15%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 +TI A++T AISI+++SG + + + + KK+ PR A + F + +LDK L Sbjct: 3 DTIAAIATPLGKGAISIVKISGNNALNILKQLTKKQDFTPRYAYVCDIFS-NNILLDKAL 61 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 +I F +P SFTGED E HG + IL+ + RLA GEFS++AF N K+DL Sbjct: 62 VIYFKAPYSFTGEDVCEIQCHGSPLLTQNILQACLNL-GARLAQAGEFSKKAFLNHKMDL 120 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE--- 182 E E+ LI E E + GEL + L + + E +D+SEE+ Sbjct: 121 SEIEASVQLILCEDESVLNALARQLKGELKIFIEEARSNLLKLLASSEVLIDYSEEDIPS 180 Query: 183 DVQNFSSKEVLNDILFLKN--DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 D N S+ + I K+ D S+ Q G+ + I+G NAGKSSL NA+ Sbjct: 181 DFLNEVSQNLEKQIASFKDLLDFSNMQKQK------NKGHALSIIGKPNAGKSSLLNAML 234 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ A+V+DI GTTRD + ++L+G+ V++ DTAGIRE+ D +E+ GI+++ +EN D Sbjct: 235 LEERALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRESMDEIERLGIEKSLKSLENCD 294 Query: 301 LILLLKEINSKKEISFPKNID--------FIFIGTKSDLYSTYTEEYDHLISSFTGEGLE 352 +IL + +++ E ID I + K+DL GLE Sbjct: 295 IILGVFDLSKPLEKEDFTIIDALNRAKKPCIVVLNKNDLAPKL--------------GLE 340 Query: 353 ELINKIKSILSNKFKKLPFSI-----PSHKRHLYHLSQ----------TVRYLEMASLNE 397 IL + F K+P+SI + K L LSQ T L + SL + Sbjct: 341 --------ILKSYF-KIPYSILETNTLNSKACLKDLSQQISAFFPKLDTQNKLLLTSLAQ 391 Query: 398 KDC----------------GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 K+ L++ + ++ A +L +T + Q+LD +FS+FC+GK Sbjct: 392 KNALENAIIELQNAKNHLETLELFSYHILSAIENLNLLTRPYETSQMLDSMFSEFCLGK 450 >gi|157781557|gb|ABV72133.1| GTP-binding thiophene and furan oxidation protein [Enterococcus malodoratus] Length = 270 Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 96/271 (35%), Positives = 158/271 (58%), Gaps = 7/271 (2%) Query: 11 VSTGALPSAISIIRLSGPSCFQVCEFICKK-KKPFPRKASLRYFFG-----LDGRILDKG 64 +ST AISI+RLSG + + + K KK + S +G D +I+D+ Sbjct: 1 ISTPPGEGAISIVRLSGDQAVAIADNVYKSGKKSLEQVPSHTIHYGHIIDPADQQIVDEV 60 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 ++ V +P++FT ED E + HGGI VVN +L+ + + RLA PGEF++RAF NG++D Sbjct: 61 MVSVMRAPKTFTREDIVEINCHGGIVVVNQLLQLILR-SGARLAEPGEFTKRAFLNGRVD 119 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ DLI ++T+ +++ + G LS L Q ++ + +E ++D+ E +DV Sbjct: 120 LSQAEAVMDLIRAKTDRAMSVAINQLDGNLSHLIRQLRQEILETLAQVEVNIDYPEYDDV 179 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + +++ +L + I + + K G+I+R G I+G N GKSSL N L ++ Sbjct: 180 EELTTQLLLEKAQQVGQQIKALLLNAKQGKILREGLSTAIIGRPNVGKSSLLNYLLHEEK 239 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 AIVT+I GTTRDV+ +++ G +K+ DTA Sbjct: 240 AIVTEIAGTTRDVIEEYVNVRGVPLKLIDTA 270 >gi|157781571|gb|ABV72140.1| GTP-binding thiophene and furan oxidation protein [Enterococcus moraviensis] Length = 270 Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 100/272 (36%), Positives = 162/272 (59%), Gaps = 9/272 (3%) Query: 11 VSTGALPSAISIIRLSGPSCFQVCEFI----CKKKKPFPRKASLRYFFGLDGR---ILDK 63 +ST AISI+RLSG + + + K+ P ++ Y LD + +LD+ Sbjct: 1 ISTPPGEGAISIVRLSGDQAIAIADKVYRSGSKQLLDVPTH-TIHYGHILDPKDESLLDE 59 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 ++ V +P++FT ED E + HGGI VVN +L+ L + RLA PGEF++RAF NG++ Sbjct: 60 VMVSVMRAPKTFTREDVVEINCHGGIVVVNQLLQLLLR-EGARLAEPGEFTKRAFLNGRM 118 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL +AE++ DLI ++T+ ++++ + G LSSL ++ + +E ++D+ E +D Sbjct: 119 DLSQAEAVMDLIRAKTDRAMHVALDQLDGNLSSLIRSLRQEILETLAQVEVNIDYPEYDD 178 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 V+ ++K +L F+K I ++ K G+I+R G I+G N GKSSL N L +++ Sbjct: 179 VEELTTKLLLEKAGFVKAQIEGLLTTAKQGKILREGLSTAIIGRPNVGKSSLLNHLLREE 238 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 AIVTDI GTTRDV+ +++ G +K+ DTA Sbjct: 239 KAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTA 270 >gi|206603436|gb|EDZ39916.1| tRNA modification GTPase TrmE [Leptospirillum sp. Group II '5-way CG'] Length = 445 Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 133/452 (29%), Positives = 221/452 (48%), Gaps = 25/452 (5%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGLDGRILDK 63 + I + +T + + IIRLSG F + ++P PR+ +DG+ +D Sbjct: 2 DPIVSAATRLISQPVGIIRLSGNGLFPKFSTLMVPPMEEPDPRRVYRIQVRDIDGQTIDD 61 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 GLL+ F SP S TGED E +HG + I+ A R A PGEF RA+ + KI Sbjct: 62 GLLLYFKSPHSLTGEDVLELQLHGNPHSLRKIISH-AICLGARQARPGEFLYRAYLHHKI 120 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSS----LYGQWIDKLTHIRSFIEADLDFS 179 LL+AESL LI + + R + SG+ S L QW+D + LD S Sbjct: 121 SLLKAESLNKLIQAPSFEHYRSQFQEYSGQKESPIEILRDQWMDLI----GLFYVALDHS 176 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 +++ V + ++ I + + I + + G+ ++I G N+GKSSLFN L Sbjct: 177 DDDIV--IEKEMIVQRIQDILDSIRLYRKAYMRAKKRWRGFSVLITGPVNSGKSSLFNRL 234 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 A+V+DIPGTTRD+L + E + + D+AG R+T D +EK+GI+R E ++ Sbjct: 235 LGDSRALVSDIPGTTRDLLEGRISSEYGDIILLDSAGFRKTGDDIEKQGIRRAIKESKDV 294 Query: 300 DLILLLK--EINSKKEISFPKNIDFIF-IGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356 LIL + E+N+ EI K I + K DL + D +SS T +G+ L + Sbjct: 295 SLILWVNSPEMNTNPEIVIGKRKSGILRVWNKCDLRPAGIGQADFEVSSRTRKGISRLYH 354 Query: 357 KIKSILSNKFKK--------LPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAEN 408 ++ + +++ + + SH+++L+ L + ++L + ++ +I+ + Sbjct: 355 FLEEKARSYYQEESEEEGNLMEGVLSSHRQYLF-LDRLAKHLVSLKDSLENRSWEILLHD 413 Query: 409 LRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L + + +G V + + D +F FCIGK Sbjct: 414 LERYNQEIQLASGLVTHQMIYDRVFQSFCIGK 445 >gi|157781569|gb|ABV72139.1| GTP-binding thiophene and furan oxidation protein [Enterococcus haemoperoxidus] Length = 270 Score = 163 bits (413), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 100/272 (36%), Positives = 162/272 (59%), Gaps = 9/272 (3%) Query: 11 VSTGALPSAISIIRLSGPSCFQVCEFI----CKKKKPFPRKASLRYFFGLDGR---ILDK 63 +ST AISI+RLSG + + + K+ P ++ Y LD + +LD+ Sbjct: 1 ISTPPGEGAISIVRLSGDEAVAIADKVYRSGSKQLLDVPSH-TIHYGHILDPKDDSLLDE 59 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 ++ V +P++FT ED E + HGGI VVN +L+ L + RLA PGEF++RAF NG++ Sbjct: 60 VMVSVMRAPKTFTREDVVEINCHGGIVVVNQLLQLLLR-EGARLAEPGEFTKRAFLNGRM 118 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL +AE++ DLI ++T+ ++++ + G LSSL ++ + +E ++D+ E +D Sbjct: 119 DLSQAEAVMDLIRAKTDRAMHVALDQLDGNLSSLIRSLRQEILETLAQVEVNIDYPEYDD 178 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 V+ ++K +L F+K I ++ K G+I+R G I+G N GKSSL N L +++ Sbjct: 179 VEELTTKLLLEKAGFVKAQIEGLLTTAKQGKILREGLSTAIIGRPNVGKSSLLNHLLREE 238 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 AIVTDI GTTRDV+ +++ G +K+ DTA Sbjct: 239 KAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTA 270 >gi|124516564|gb|EAY58072.1| TRNA modification GTPase TrmE [Leptospirillum rubarum] Length = 445 Score = 163 bits (413), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 137/457 (29%), Positives = 218/457 (47%), Gaps = 35/457 (7%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKASLRYFFGLDGRILDK 63 + I + +T + + IIRLSG F I ++P PR+ DG+ +D Sbjct: 2 DPIVSAATRLISQPVGIIRLSGNGLFPKFSTLMIPPMEEPEPRRIYRIRVRDRDGQPIDD 61 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 GLL+ F SP S TGED E +HG + I+ A R A PGEF RA+ + KI Sbjct: 62 GLLLYFKSPHSLTGEDVLELQLHGNPHSLRKIISH-AICLGARQARPGEFLYRAYLHHKI 120 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSS----LYGQWIDKLTHIRSFIEADLDFS 179 LL+AESL LI + + Q R + SG+ S L QW+D + LD S Sbjct: 121 SLLKAESLNKLIQAPSFEQYRSQFQEYSGQRRSPIDLLREQWMDLI----GLFYVALDHS 176 Query: 180 E-----EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234 E E+D+ +++L I + + K G+ ++I G N+GKSS Sbjct: 177 EDDIVVEKDLILQRIQDILESIRLYRKAYRHSKKRWK-------GFSVLITGPVNSGKSS 229 Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294 LFN L A+V+DIPGTTRD+L + E + + D+AGIR+T D +EK+GI+R Sbjct: 230 LFNRLLGDSRALVSDIPGTTRDLLEGRISSEFGDIILLDSAGIRKTGDDIEKQGIRRAIK 289 Query: 295 EVENADLILLLK--EINSKKEISFPKN-IDFIFIGTKSDLYSTYTEEYDHLISSFTGEGL 351 E+ + L+L + +++S EI K + + K DL D +SS T +G+ Sbjct: 290 EINDVSLVLWVNSPDMDSNPEIVIGKRKTGIVRVWNKCDLRPAGKGHSDFEVSSRTRKGI 349 Query: 352 EELINKIKSILSNKFK--------KLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLD 403 L ++ + ++ L + SH+++L+ L + ++L + + + Sbjct: 350 SRLYRFLEEKAQSYYQDENEEEGNLLEGDLSSHRQYLF-LDRLAKHLVSLRDSLEQRSWE 408 Query: 404 IIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 I+ +L + + +G V + + D +F FCIGK Sbjct: 409 ILLHDLERYNQEIQLASGLVTHQMIYDRVFQSFCIGK 445 >gi|157781573|gb|ABV72141.1| GTP-binding thiophene and furan oxidation protein [Enterococcus faecalis] gi|157781575|gb|ABV72142.1| GTP-binding thiophene and furan oxidation protein [Enterococcus faecalis] Length = 270 Score = 163 bits (413), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 95/271 (35%), Positives = 160/271 (59%), Gaps = 7/271 (2%) Query: 11 VSTGALPSAISIIRLSGPSCFQVCEFICKK-KKPFPRKASLRYFFG-----LDGRILDKG 64 +ST AISI+RLSG + + + K + + +G + +++D+ Sbjct: 1 ISTPPGEGAISIVRLSGEQAVAIANKVYRSGTKDLAKVPTHTIHYGHIVDPQNDQLIDEV 60 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 +L V +P++FT ED E + HGGI VVN +L+ L + R+A PGEF++RAF NG++D Sbjct: 61 MLSVMRAPKTFTREDVVEINCHGGIVVVNQLLQLLLR-EGARMAEPGEFTKRAFLNGRMD 119 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ DLI ++T+ +++ + G LS+L ++ + + +E ++D+ E +DV Sbjct: 120 LSQAEAVMDLIRAKTDKAMNVALNQLDGNLSALIRSLRQEILNTLAQVEVNIDYPEYDDV 179 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + ++K +L F+K I ++ K G+I+R G I+G N GKSSL N L +++ Sbjct: 180 EELTTKLLLEKAEFVKAQIQQLLTTAKQGKILREGLSTAIIGRPNVGKSSLLNHLLREEK 239 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 AIVTDI GTTRDV+ +++ G +K+ DTA Sbjct: 240 AIVTDIAGTTRDVIEEYVNVRGVPLKLIDTA 270 >gi|326436265|gb|EGD81835.1| hypothetical protein PTSG_02550 [Salpingoeca sp. ATCC 50818] Length = 395 Score = 163 bits (412), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 134/448 (29%), Positives = 213/448 (47%), Gaps = 73/448 (16%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG-LDGRILD 62 + ETIFA+S+G + + +++IR+SGP + K P R AS+R F L G +LD Sbjct: 10 QGETIFALSSGGVRAGVAVIRVSGPQAHDSITQLTKAAAPPARLASVRKLFDPLSGDMLD 69 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 L++ F SFTGE AEF VHGG AVV+ +L+ L + LR A PGEF+RR+F N + Sbjct: 70 HALVLRFDEGHSFTGEAIAEFQVHGGNAVVSSVLKALEGVEGLRHAEPGEFTRRSFWNDR 129 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 +DL + E L+DLI++ETE QR+ ++ M+G+ S +Y W L + IEA +DFSEEE Sbjct: 130 MDLTQVEGLSDLITAETEQQRKQALSYMTGKASKVYQTWKSTLLRAVAQIEAYIDFSEEE 189 Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQG---KLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 +++ D+++ + Q + E R V + S+ SS ++L Sbjct: 190 NIE---------------EDVTARVDQAGVRRATEAARQADLRVCVQDSSQPPSSRCSSL 234 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEV 296 PG + EG + I + I T D + T Sbjct: 235 -----------PGGQGPCHCTQAN-EGETLVILNKTDISSTPDFGSDADASPTTWTPTAS 282 Query: 297 ENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTG-EGLEELI 355 + D L + ++ K E P ++ + + L S G G + +I Sbjct: 283 SHCDQGLAVFRLSCKTEQGLPAFLEAL------------EDRVRRLCSEGAGSSGTDVVI 330 Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG-LDII--AENLRLA 412 + + H++H ++ ++YL+ A K+ G +DI+ A+ +R A Sbjct: 331 TRER----------------HRQH---VATCLQYLKEA----KEYGEVDIVSRAQMMRFA 367 Query: 413 SVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LG I G V +E +LD +F++FCIGK Sbjct: 368 LNELGLILGSVHLEDILDELFAEFCIGK 395 >gi|157781619|gb|ABV72164.1| GTP-binding thiophene and furan oxidation protein [Enterococcus hermanniensis] Length = 270 Score = 163 bits (412), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 97/271 (35%), Positives = 157/271 (57%), Gaps = 7/271 (2%) Query: 11 VSTGALPSAISIIRLSGPSCFQVCEFICKK-KKPFPRKASLRYFFG-----LDGRILDKG 64 +ST AISI+RLSG Q+ + I + KK +S +G D +I+D+ Sbjct: 1 ISTPPGEGAISIVRLSGDQAVQIADSIYRSGKKSLVDVSSHTIHYGHIIDPSDQQIVDEV 60 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 ++ V +P++FT ED E + HGGI VVN +L+ L RLA PGEF++RAF NG++D Sbjct: 61 MVSVMRAPKTFTREDIVEINCHGGIVVVNQLLQ-LVLRSGARLAEPGEFTKRAFLNGRVD 119 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ DLI ++T+ +++ + G LS L ++ + +E ++D+ E +DV Sbjct: 120 LSQAEAVMDLIRAKTDKAMNIAINQLDGNLSHLIRSLRQEILQTLAQVEVNIDYPEYDDV 179 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + +++ +L + I + + K G+I+R G I+G N GKSSL N L ++ Sbjct: 180 EELTTQLLLEKSQQVGQQIDALLLNAKQGKILREGLSTAIIGRPNVGKSSLLNYLLHEEK 239 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 AIVT+I GTTRDV+ +++ G +K+ DTA Sbjct: 240 AIVTEIAGTTRDVIEEYVNVRGVPLKLIDTA 270 >gi|303285410|ref|XP_003061995.1| hypothetical protein MICPUCDRAFT_21154 [Micromonas pusilla CCMP1545] gi|226456406|gb|EEH53707.1| hypothetical protein MICPUCDRAFT_21154 [Micromonas pusilla CCMP1545] Length = 545 Score = 163 bits (412), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 142/507 (28%), Positives = 235/507 (46%), Gaps = 85/507 (16%) Query: 4 EKETIFAVSTGALPSA--ISIIRLSGPSCFQVCEFICKKKKPFPRKASLR--------YF 53 + ETI AV+T +P A ++I+RLSG + I + P +ASLR Sbjct: 54 DSETIAAVATPVVPQAGGVAILRLSGDNALAATSRIFR---PASSRASLRRGECVSHLAL 110 Query: 54 FG-----LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGIL------------ 96 +G G I+D+ L++ +P S+T ED E H HGG V +L Sbjct: 111 YGDVVDPASGEIVDEALVLPMLAPRSYTTEDVVEIHCHGGSVCVQRVLALLVNAGGDRSG 170 Query: 97 ----------EELAK---MPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQR 143 EE AK +P +RLA GEF+ RAF NG+IDL +AE++ L+S++T + Sbjct: 171 SGTGGARGTDEEDAKDAAIPAVRLARAGEFTLRAFLNGRIDLTQAEAVQSLVSAKTTVAA 230 Query: 144 RLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDI 203 ++ + G L++ + + +EA LDF +E D V + + I Sbjct: 231 SSALASLRGGLATPVKDARRVCVDLLAELEARLDFDDEMD--PLDEDGVATSVERAEAKI 288 Query: 204 SSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD 263 ++ + G ++ G + I+G NAGKSSL NA + + AIVT I GTTRDV+ ++ Sbjct: 289 REVLATARRGALLDAGVVVAIVGRPNAGKSSLLNAWTRSERAIVTPIAGTTRDVVEASIN 348 Query: 264 LEGYLVKISDTAGIR--ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNID 321 + G V + DTAGIR D VE G++R+ + AD+++ + + + + D Sbjct: 349 VRGVPVTLLDTAGIRFGVGIDEVEAMGVERSRAALAGADVVVFVVDASE----GWTDGDD 404 Query: 322 FIFIGTKSD--------------------------LYSTYTEEYDHLISSFTGEGLEELI 355 I G + ST T +S+ G+G+++L Sbjct: 405 DILRGITGERVVIGDGDGDDDDDEDEDAGEVKDGAFASTVT------LSATRGDGVDDLE 458 Query: 356 NKIKSILSNKFKKLP-FSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGLDIIAENLRLAS 413 + ++ + + +++R L+ + L + + +D +LR A+ Sbjct: 459 RALAEVIGGGDVDVEGAAWVANQRQAEALTTALDALSRLKDTIAEGLPVDFWTIDLREAA 518 Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++LG++TG E +LD+IF+KFCIGK Sbjct: 519 LALGEVTGEDVAEDVLDVIFTKFCIGK 545 >gi|84995997|ref|XP_952720.1| trna modification gtpase [Theileria annulata strain Ankara] gi|65303717|emb|CAI76094.1| trna modification gtpase, putative [Theileria annulata] Length = 538 Score = 163 bits (412), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 105/332 (31%), Positives = 180/332 (54%), Gaps = 39/332 (11%) Query: 1 MNHEKETIFAVSTGALP---SAISIIRLSGPSCFQVCEFICKKKKPFPRKASL----RYF 53 +N ETI+ +S+G +P ++++R+SGP + KK P K + + Sbjct: 44 LNILNETIYGLSSG-IPEGGCGVAVVRISGPDSIHTLNLLTKKSDNVPYKPRFVKLCKLY 102 Query: 54 FGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN-----LRLA 108 ++ ++D+ L + F SP S+TG+D E H HG ++ + + + N LR A Sbjct: 103 SLINNNLIDEPLTLYFKSPNSYTGDDVVEIHTHGNEVIIKELFDNFRHIANNYNIKLRQA 162 Query: 109 NPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHI 168 GEF+RRA+ + K++L++ ES+ +LI S+ +Q++ S+ L W + L I Sbjct: 163 ERGEFTRRAYYSNKLNLIQVESINELIRSKNHIQKQNSI---------LKVIWTNDLIDI 213 Query: 169 RSFIEADLDFSEEE--DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILG 226 S +EA +DF EE D+ ++ +L+ + L +I I+ K E I +G K+++LG Sbjct: 214 ISKVEASIDFQEESCSDIILMNTSSILDPVQNLTQEIFKFINDKK--ETIVDGIKLLLLG 271 Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI--RETD--- 281 +N+GKSS N L D++IV++IPGTTRD++ ++ +L G +I D+AGI R D Sbjct: 272 PTNSGKSSFINNLFNDDISIVSNIPGTTRDLIRVNYNLNGLNYQIIDSAGINNRILDGIT 331 Query: 282 --------DIVEKEGIKRTFLEVENADLILLL 305 D +E GIK+ ++E +++IL L Sbjct: 332 NWSESSDCDAIELIGIKKALDQIETSNVILFL 363 >gi|203287638|ref|YP_002222653.1| thiophene and furan oxidation protein [Borrelia recurrentis A1] gi|226704781|sp|B5RQZ8|MNME_BORRA RecName: Full=tRNA modification GTPase mnmE gi|201084858|gb|ACH94432.1| thiophene and furan oxidation protein [Borrelia recurrentis A1] Length = 464 Score = 162 bits (411), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 137/467 (29%), Positives = 234/467 (50%), Gaps = 37/467 (7%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA--SLRYFFGLDGRI 60 +++ I A++T SA+ +IR SG S + + + ++ Y + LD Sbjct: 6 QKEDDIVALATPFFSSALCVIRSSGVSAIEKFSTMFSDPSKLLEASGHTIHYGYILDNET 65 Query: 61 ---LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 LD+ ++ ++ +P+SFTG+DS E HG + + I++ K+ R+A PGEF+ R+ Sbjct: 66 KEKLDEVVVCLYRAPKSFTGQDSIEVMAHGSLIGIRRIIDFFLKV-GFRMAEPGEFTLRS 124 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F GK+DL +AE++ +LIS++T L++ +SG L + + S I LD Sbjct: 125 FLAGKLDLTKAEAINELISAKTRQVHALAVNKLSGSLFDKIDLIKKDILNFLSAISVYLD 184 Query: 178 FSEEEDVQNFSSKEVL---NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234 + +++ EV+ + IL K+++ I + NG +V+ G N GKSS Sbjct: 185 YETDDN-------EVVIPVDIILKSKSELERLIDSYDTARKLENGVTLVLAGSVNVGKSS 237 Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294 LFN L K+D AIV+ GTTRD + + +G L + DTAG+RET D VE+ GI R+ Sbjct: 238 LFNLLLKEDRAIVSSYAGTTRDYIQASFEFDGILFNVFDTAGLRETSDFVEQLGIVRSNS 297 Query: 295 EVENADLILLLKEINSKKEISFPKNID-------FIFIGTKSDL-YSTYTEEYDHL---- 342 ++ A LI + +++ K K ID +F+ K DL + T E+ + Sbjct: 298 LIKEASLIFYVVDLSGKLTDDDLKFIDAYKEDSRVLFVLNKVDLEQNNQTVEFFNSNDIV 357 Query: 343 ------ISSFTGEGLEELINKIKSILSNKFKKLP---FSIPSHKRHLYHLSQTVRYLEMA 393 IS+ T G+ L ++I+S ++ + K I S ++ +E+ Sbjct: 358 SLNTVKISTKTLFGINSLYDRIRSFIAVDYMKTSDYDIVISSTRQAALLKRAYALIIELL 417 Query: 394 SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 S E++ D++A ++ LG+ITG V + +L+ +F FC+GK Sbjct: 418 SKIEQNISYDMLAFDVYEVVNVLGEITGEVTSDDVLNNMFKNFCLGK 464 >gi|157781561|gb|ABV72135.1| GTP-binding thiophene and furan oxidation protein [Enterococcus pallens] Length = 270 Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 95/271 (35%), Positives = 157/271 (57%), Gaps = 7/271 (2%) Query: 11 VSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA---SLRYFFGLDGR---ILDKG 64 +ST AISI+RLSG ++ + + + K +K ++ Y +D ++D+ Sbjct: 1 ISTPPGEGAISIVRLSGDQAIEIADKVFQSGKKTLKKVDSHTIHYGHIVDPANQVLVDEV 60 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 ++ V P++FT ED E + HGGI VVN +L+ + + RLA PGEF++RAF NG++D Sbjct: 61 MVSVMRRPKTFTREDVVEINCHGGIVVVNELLQLILR-EGARLAEPGEFTKRAFLNGRVD 119 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ DLI ++T+ +++ + G LS L Q ++ + +E ++D+ E +DV Sbjct: 120 LSQAEAVMDLIRAKTDKAMNVAINQLDGNLSKLIRQLRQEILETLAQVEVNIDYPEYDDV 179 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + ++K +L + I + + K G+I+R G I+G N GKSSL N L ++ Sbjct: 180 EELTTKLLLEKAGQVSQQIDALLVNAKQGKILREGLSTAIIGRPNVGKSSLLNYLLHEEK 239 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 AIVTDI GTTRDV+ + + G +K+ DTA Sbjct: 240 AIVTDIAGTTRDVIEEYVSVRGVPLKLVDTA 270 >gi|157781589|gb|ABV72149.1| GTP-binding thiophene and furan oxidation protein [Enterococcus villorum] Length = 270 Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 96/271 (35%), Positives = 161/271 (59%), Gaps = 7/271 (2%) Query: 11 VSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFPRKA-SLRYFFGLDGR---ILDKG 64 +ST AISI+RLSG + + + C KK + ++ Y +D + ++D+ Sbjct: 1 ISTPPGEGAISIVRLSGDQAVAIADKVYRCGKKSLLEVPSHTIHYGHIIDPKTQQLVDEV 60 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 ++ + +P++FT ED E + HGGI VVN IL+ L + RLA PGEF++RAF NG++D Sbjct: 61 MISIMLAPKTFTREDVVEINCHGGIVVVNQILQLLLR-EGARLAEPGEFTKRAFLNGRVD 119 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ DLI ++T+ L++ + G LSSL ++ + +E ++D+ E +DV Sbjct: 120 LSQAEAVMDLIRAKTDKAMGLALNQLDGNLSSLIRSLRQEILETLAQVEVNIDYPEYDDV 179 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + +++ +L ++ I ++ K G+++R G I+G N GKSSL N L +++ Sbjct: 180 EELTTRLLLEKATMIQQQIQQLLATSKQGKVLREGLSTAIIGRPNVGKSSLLNHLLQEEK 239 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 AIVTDI GTTRDV+ +++ G +K+ DTA Sbjct: 240 AIVTDIAGTTRDVIEEYVNVRGVPLKLIDTA 270 >gi|330925757|ref|XP_003301179.1| hypothetical protein PTT_12622 [Pyrenophora teres f. teres 0-1] gi|311324284|gb|EFQ90706.1| hypothetical protein PTT_12622 [Pyrenophora teres f. teres 0-1] Length = 406 Score = 160 bits (406), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 124/403 (30%), Positives = 188/403 (46%), Gaps = 71/403 (17%) Query: 104 NLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWID 163 +R A PGEF+RRAF N ++DL + ESL + +S+ TE QR+LS+ G + L++ Y W Sbjct: 4 QIRYAEPGEFTRRAFANNRMDLPQIESLGETLSASTEQQRKLSVRGTTSSLAARYEHWRM 63 Query: 164 KLTHIRSFIEADLDFSEEEDVQNFSS---KEVLNDILFLKNDISSHISQGKLGEIIRNGY 220 L R +EA +DFSE++ + V + L+ + +H++ GE++RNG Sbjct: 64 LLLQARGELEALIDFSEDQHFDESPAVLCASVAAQVDALRVLMEAHVANAVRGELLRNGI 123 Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + +LG NAGKSSL N + +D AIV+ GTTRDV+ + LDL G+LVKI D AG+R+ Sbjct: 124 SVALLGAPNAGKSSLLNRVVGRDAAIVSQEAGTTRDVVEVGLDLGGWLVKIGDMAGLRKA 183 Query: 281 DDI-------VEKEGIKRTFLEVENADLILLLK--------EINSKKEISFPKNIDFIFI 325 + VEKEGI+R ++++++++ E+ + ID I Sbjct: 184 GLVGADVVGAVEKEGIRRAKQRALESNVVIVVQDATADVDPEVMVTAKQCVDSGIDVIVA 243 Query: 326 GTKSD---LYSTYTEEYDHLISSFTGEGLEELI-----------NKIKS---ILSNKFKK 368 K+D ST ++ I S G + IKS IL N FK Sbjct: 244 INKTDRLPALSTARSAWEEKIQSTLGISSHRICFISCNETTPTAGNIKSFLDILQNTFKS 303 Query: 369 L-----PFSIPSHKRHLYHLSQTVRY----------------------------LEMASL 395 + P S P L T R E A+ Sbjct: 304 MTTALVPDSDPDPSIWQESLGATERQRLLLSESLSHLSTFLSTVADPTIADLPAFETAAH 363 Query: 396 NEKDCGLDIIAENLRLASVSLGKITG---CVDVEQLLDIIFSK 435 + + + AE LR A+ +L +ITG DVE++L ++F K Sbjct: 364 EADEVDIVVAAECLRSAADALARITGRGDNGDVEEVLGVVFEK 406 >gi|157781559|gb|ABV72134.1| GTP-binding thiophene and furan oxidation protein [Enterococcus pseudoavium] Length = 270 Score = 160 bits (405), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 94/271 (34%), Positives = 157/271 (57%), Gaps = 7/271 (2%) Query: 11 VSTGALPSAISIIRLSGPSCFQVCEFICKK-KKPFPRKASLRYFFG-----LDGRILDKG 64 +ST AISI+RLSG + + + + KK S +G D +++D+ Sbjct: 1 ISTPPGEGAISIVRLSGDQAVAIADSVYQSGKKSLLDVPSHTIHYGHIVDPADHQVVDEV 60 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 ++ V +P++FT ED E + HGGI VVN +L+ + + RLA PGEF++RAF NG++D Sbjct: 61 MVSVMRAPKTFTREDIVEINCHGGIVVVNQLLQLILR-SGARLAEPGEFTKRAFLNGRVD 119 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ DLI ++T+ +++ + G LS L Q ++ + +E ++D+ E +DV Sbjct: 120 LSQAEAVMDLIRAKTDRAMNVAINQLDGNLSHLIRQLRQEILETLAQVEVNIDYPEYDDV 179 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + +++ +L + I + + K G+I+R G I+G N GKSSL N L ++ Sbjct: 180 EELTTQLLLEKAQQVGQQIEALLLNAKQGKILREGLSTAIIGRPNVGKSSLLNYLLHEEK 239 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 AIVT+I GTTRDV+ +++ G +K+ DTA Sbjct: 240 AIVTEIAGTTRDVIEEYVNVRGVPLKLIDTA 270 >gi|157781595|gb|ABV72152.1| GTP-binding thiophene and furan oxidation protein [Enterococcus mundtii] Length = 270 Score = 160 bits (404), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 94/272 (34%), Positives = 158/272 (58%), Gaps = 9/272 (3%) Query: 11 VSTGALPSAISIIRLSGPSCFQVCEFIC----KKKKPFPRKASLRYFFGLDGR---ILDK 63 +ST AISI+RLSG + + K+ P ++ Y +D + ++D+ Sbjct: 1 ISTPPGEGAISIVRLSGDQALTIANKVYQSGNKQLLDVPSH-TIHYGHIVDPKSEQLVDE 59 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 ++ V +P +FT ED E + HGGI VVN IL+ L + RLA PGEF++RAF NG++ Sbjct: 60 VMVSVMRAPRTFTREDVVEINCHGGIVVVNQILQLLLR-EGARLAEPGEFTKRAFLNGRV 118 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL +AE++ DLI ++T+ +++ + G LS+L ++ + +E ++D+ E +D Sbjct: 119 DLSQAEAVMDLIRAKTDKAMGVALNQLDGNLSALIRSLRQEILETLAQVEVNIDYPEYDD 178 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 V+ ++K +L ++ I ++ + G+++R G I+G N GKSSL N L +++ Sbjct: 179 VEELTTKLLLEKAQMIQQRIEVLLATSQQGKVLREGLSTAIIGRPNVGKSSLLNHLLREE 238 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 AIVTDI GTTRDV+ +++ G +K+ DTA Sbjct: 239 KAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTA 270 >gi|157781553|gb|ABV72131.1| GTP-binding thiophene and furan oxidation protein [Enterococcus gilvus] Length = 270 Score = 160 bits (404), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 93/271 (34%), Positives = 158/271 (58%), Gaps = 7/271 (2%) Query: 11 VSTGALPSAISIIRLSGPSCFQVCEFICKK-KKPFPRKASLRYFFG-----LDGRILDKG 64 +ST AISI+RLSG + + + + KK S +G ++ +++D+ Sbjct: 1 ISTPPGEGAISIVRLSGDQAVTIADKVYRSGKKSLSDVPSHTIHYGHIIDPVEQQVVDEV 60 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 ++ V +P++FT ED E + HGGI VVN +L+ + + RLA PGEF++RAF NG++D Sbjct: 61 MISVMRAPKTFTREDIVEINCHGGIVVVNQLLQLILR-SGARLAEPGEFTKRAFLNGRVD 119 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ DLI ++T+ +++ + G LS L Q ++ + +E ++D+ E +DV Sbjct: 120 LSQAEAVMDLIRAKTDRAMSVAINQLDGNLSHLIRQLRQEILGTLAQVEVNIDYPEYDDV 179 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + +++ +L + I + + K G+I+R G I+G N GKSSL N L ++ Sbjct: 180 EELTTQLLLEKAQQVGQQIDALLLNAKQGKILREGLSTAIIGRPNVGKSSLLNYLLHEEK 239 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 AIVT+I GTTRDV+ +++ G +K+ DTA Sbjct: 240 AIVTEIAGTTRDVIEEYVNVRGVPLKLIDTA 270 >gi|322381046|ref|ZP_08055074.1| tRNA modification GTPase TrmE [Helicobacter suis HS5] gi|321146516|gb|EFX41388.1| tRNA modification GTPase TrmE [Helicobacter suis HS5] Length = 455 Score = 159 bits (402), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 130/464 (28%), Positives = 225/464 (48%), Gaps = 33/464 (7%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M TI A++T AI+I++LSG + + +++ PR A+L + G + Sbjct: 1 MTFTNSTIAAIATPPGLGAIAIVKLSGSKSLSILNALSHRQRFTPRMATLVSLYDATGDL 60 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+ L + F +P S+TGED E HGG+ V ILE K + LA GEF++RAF N Sbjct: 61 LDQCLALYFKAPHSYTGEDVVELQCHGGMVVARLILEACLKQGAI-LAKGGEFTQRAFLN 119 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 ++DL + ++LA L+ S+ ++ + + G L L + + E +D++E Sbjct: 120 NRMDLSQVQALAKLLESQNANMVKVMAKQIKGALKDFVQTTRTALLKLLASSEVLIDYAE 179 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E+ N + + D+ ++ + + + GY + I+G N GKSSL NAL Sbjct: 180 EDLPLNLLDR-MQEDLEQIEQQLLKVLEVSRARSAKLEGYTLSIIGKPNVGKSSLLNALL 238 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ A+V++I GTTRD + + L G +KI DTAGIR ++D +E+ GI ++ ++ +D Sbjct: 239 LEERALVSEIAGTTRDTIEEVISLYGSSLKIIDTAGIRTSNDPIERLGIAKSKQRMQESD 298 Query: 301 LILLLKEINSKKEIS-------FPKNIDFIF--IGTKSD---------LYSTYTEEYDHL 342 +IL L +++S + N D I I K+D L + + Sbjct: 299 IILALFDLSSPLDHQDQVILELLQANQDKILCVIFNKNDCPTKLDTTALLAVLPPLFAPA 358 Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT------VRYLEMASLN 396 +S T E L+ K K L P+ L L+Q ++ L+ A Sbjct: 359 MSLNTKEPCLPLLKK-------ALKPLFEHNPNDSLILATLTQQNSLELGIKSLQSAKKP 411 Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + L++ + +++ A S+ I+ +++LD +F +FC+GK Sbjct: 412 LQHAELELFSYHIKDALESIVAISTPYYTDEMLDAMFQEFCLGK 455 >gi|157781577|gb|ABV72143.1| GTP-binding thiophene and furan oxidation protein [Enterococcus dispar] Length = 270 Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 94/271 (34%), Positives = 158/271 (58%), Gaps = 7/271 (2%) Query: 11 VSTGALPSAISIIRLSGPSCFQVCEFICK---KKKPFPRKASLRYFFGLDG---RILDKG 64 +ST AISI+RLSG ++ + + K+ ++ Y D +++D+ Sbjct: 1 ISTPPGEGAISIVRLSGDDAVKIANEVYRSGSKQLADVDSHTIHYGHIFDPATEKMVDEV 60 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 ++ V +P++FT ED E + HGGI VVN IL+ L + RLA PGEF++RAF NG++D Sbjct: 61 MVSVMRAPKTFTREDVIEINCHGGIVVVNQILQLLLRQ-GARLAEPGEFTKRAFLNGRVD 119 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ DLI ++T+ L++ + G LSSL ++ + +E ++D+ E +DV Sbjct: 120 LSQAEAVMDLIRAKTDKAMNLALNQLDGNLSSLIRSLRQEILETLAQVEVNIDYPEYDDV 179 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + +++ +L ++ I+ + + G+I+R G I+G N GKSSL N L ++ Sbjct: 180 EELTTRLLLEKANQVQGQINQLLLTAQQGKILREGLSTAIIGRPNVGKSSLLNHLLAEEK 239 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 AIVTD+ GTTRDV+ +++ G +K+ DTA Sbjct: 240 AIVTDVAGTTRDVIEEYVNVRGVPLKLIDTA 270 >gi|332853901|ref|XP_001161204.2| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial-like [Pan troglodytes] Length = 354 Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 105/319 (32%), Positives = 166/319 (52%), Gaps = 34/319 (10%) Query: 150 MSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQ 209 + GEL L W + LT + +EA +DF E+++++ ++ + L+ + +H+ Sbjct: 42 LDGELGHLCRGWAETLTKALAHVEAYIDFGEDDNLEEGVLEQADIKVRALEVALGAHLRD 101 Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269 + G+ +R+G +V+ G NAGKSSL N L++K V+IV+ PGTTRDVL +DL G+ V Sbjct: 102 ARRGQRLRSGAHVVVTGPPNAGKSSLVNLLSRKPVSIVSPEPGTTRDVLETPVDLAGFPV 161 Query: 270 KISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF------- 322 +SDTAG+RE VE+EG++R +E ADLIL + + + +++ P + +F Sbjct: 162 LLSDTAGLREGVGPVEQEGVRRARERLEQADLILAMLDAS---DLASPSSCNFLATVVAS 218 Query: 323 -------------IFIGTKSDLYSTYTEEYDH------LISSFTGEGLEELINKIKSILS 363 + + KSDL S L+S TGEGL+ L+ ++ L+ Sbjct: 219 VGAQSPSDSSQRLLLVLNKSDLLSPEGPGPGPDLPPHLLLSCLTGEGLDGLLEALRKELA 278 Query: 364 NKFKKLPFSIP--SHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITG 421 P + RH +HL + L KD L + AE LR+A L ++TG Sbjct: 279 AVCGDPSTDPPLLTRARHQHHLQGCLDALGHYK-QSKD--LALAAEALRVARGHLTRLTG 335 Query: 422 CVDVEQLLDIIFSKFCIGK 440 E++LDIIF FC+GK Sbjct: 336 GGGTEEILDIIFRDFCVGK 354 >gi|157781621|gb|ABV72165.1| GTP-binding thiophene and furan oxidation protein [Enterococcus italicus DSM 15952] Length = 270 Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 94/272 (34%), Positives = 159/272 (58%), Gaps = 9/272 (3%) Query: 11 VSTGALPSAISIIRLSGPSCFQVCEFI----CKKKKPFPRKASLRYFFGLDGR---ILDK 63 +ST AISI+RLSG + + K+ P ++ Y +D + ++D+ Sbjct: 1 ISTPPGEGAISIVRLSGDQAIAIAANVFQAGTKQLAAVPSH-TIHYGHIIDPKTEQLVDE 59 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 ++ V +P++FT ED E + HGGI VVN +L+ L + RLA PGEF++RAF NG++ Sbjct: 60 VMVSVMRAPKTFTREDVVEINCHGGIVVVNQLLQLLLRQ-GARLAEPGEFTKRAFLNGRV 118 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL +AE++ DLI ++T+ L++ + G LS+L ++ + +E ++D+ E +D Sbjct: 119 DLSQAEAVMDLIRAKTDKAMNLALNQLDGRLSNLIRALRQEILETLAQVEVNIDYPEYDD 178 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 V+ +S+ ++ ++ I + + K G+I+R G I+G N GKSSL N L +++ Sbjct: 179 VEALTSQLLVEKAHHVQAQIQALLQTAKQGKILREGLNTTIIGRPNVGKSSLLNHLLREE 238 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 AIVTD+ GTTRDV+ +++ G +K+ DTA Sbjct: 239 KAIVTDVAGTTRDVIEEYVNVRGVPLKLVDTA 270 >gi|325678533|ref|ZP_08158144.1| tRNA modification GTPase TrmE [Ruminococcus albus 8] gi|324109752|gb|EGC03957.1| tRNA modification GTPase TrmE [Ruminococcus albus 8] Length = 455 Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 146/468 (31%), Positives = 234/468 (50%), Gaps = 49/468 (10%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYF---FGL---DGRI 60 TI A+ST IS+IR+SG + V E I P A + + +G +GR Sbjct: 3 TICAISTPVAEGGISVIRISGENALNVAEKIFAPHT-CPSVAGMAGYTCAYGQINDNGRA 61 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D G+L VF +P S+TGED E HGGI V +L L A GEF++RA N Sbjct: 62 VDDGVLTVFRAPHSYTGEDVCEISCHGGIYVTKRVLR-LCLENGAEPAQAGEFTKRAMLN 120 Query: 121 GKIDLLEAESLADLISSETE---MQRRLSMEGMSGELSSLYGQWIDKLTH----IRSFIE 173 GK+ L +AE++ D I+++ E L+ +G SL+G+ IDK+T + + Sbjct: 121 GKLSLTQAEAVMDTIAAQGEYALASANLTRKG------SLFGR-IDKVTKELVKLLGELA 173 Query: 174 ADLDFSEEE--DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAG 231 A +D+ EE+ V+ + +E L + + + + + G L I+NG VI G N G Sbjct: 174 AWVDYPEEDLPAVEENALRESLKNAVSVTGRLLADSDNGML---IKNGIDTVIAGRPNVG 230 Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR 291 KS+L N L D +IVT++ GTTRDV+ L + ++SDTAGIR+T+D VEK G++ Sbjct: 231 KSTLMNLLLGYDRSIVTEVAGTTRDVIEESARLGELIFRLSDTAGIRDTEDKVEKIGVEM 290 Query: 292 TFLEVENADLILLLKEINSK----------KEISFPKNIDFIFIGTKSDLYSTYTEEYDH 341 +E L++ + + + K K S K + + KSDL S E++ Sbjct: 291 AQKRLEECMLVIEVFDTSVKPDDDDTALLEKVRSLGKRA--LIVLNKSDLESAVGEDFFR 348 Query: 342 -------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMAS 394 IS+ E++ + ++ I + + +I +++R L + + L A+ Sbjct: 349 EYCENIVCISAKDPNDREKIQHALEKIFTPENYDADSTIFANERQRGCLVKANKNL-TAA 407 Query: 395 LNEKDCG--LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L + G LD + + A+ SL ++TG E ++ +FSKFC+GK Sbjct: 408 LEALEMGETLDAVTVMIDYAADSLLELTGEKATEAVVSEVFSKFCVGK 455 >gi|322379149|ref|ZP_08053545.1| tRNA modification GTPase TrmE [Helicobacter suis HS1] gi|321148412|gb|EFX42916.1| tRNA modification GTPase TrmE [Helicobacter suis HS1] Length = 455 Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 130/464 (28%), Positives = 224/464 (48%), Gaps = 33/464 (7%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M TI A++T AI+I++LSG + + +++ PR A+L + G + Sbjct: 1 MTFTNSTIAAIATPPGLGAIAIVKLSGSKSLSILNALSHRQRFTPRMATLVSLYDATGDL 60 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+ L + F +P S+TGED E HGG+ V ILE K + LA GEF++RAF N Sbjct: 61 LDQCLALYFKAPHSYTGEDVVELQCHGGMVVARLILEACLKQGAI-LAKGGEFTQRAFLN 119 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 ++DL + ++LA L+ S+ + + + G L L + + E +D++E Sbjct: 120 NRMDLSQVQALAKLLESQNANMVKAMAKQIKGALKDFVQTTRTALLKLLASSEVLIDYAE 179 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E+ N + + D+ ++ + + + GY + I+G N GKSSL NAL Sbjct: 180 EDLPLNLLDR-MQEDLEQIEQQLLKVLEVSRARSAKLEGYTLSIIGKPNVGKSSLLNALL 238 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 ++ A+V++I GTTRD + + L G +KI DTAGIR ++D +E+ GI ++ ++ +D Sbjct: 239 LEERALVSEIAGTTRDTIEEVISLYGSSLKIIDTAGIRTSNDPIERLGIAKSKQRMQESD 298 Query: 301 LILLLKEINSKKEIS-------FPKNIDFIF--IGTKSD---------LYSTYTEEYDHL 342 +IL L +++S + N D I I K+D L + + Sbjct: 299 IILALFDLSSPLDHQDQVILELLQANQDKILCVIFNKNDCPTKLDTTALLAVLPPLFAPA 358 Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT------VRYLEMASLN 396 +S T E L+ K K L P+ L L+Q ++ L+ A Sbjct: 359 MSLNTKEPCLPLLKK-------ALKPLFEHNPNDSLILATLTQQNSLELGIKSLQSAKKP 411 Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + L++ + +++ A S+ I+ +++LD +F +FC+GK Sbjct: 412 LQHAELELFSYHIKDALESIVAISTPYYTDEMLDAMFQEFCLGK 455 >gi|302341712|ref|YP_003806241.1| tRNA modification GTPase TrmE [Desulfarculus baarsii DSM 2075] gi|301638325|gb|ADK83647.1| tRNA modification GTPase TrmE [Desulfarculus baarsii DSM 2075] Length = 460 Score = 157 bits (398), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 123/436 (28%), Positives = 217/436 (49%), Gaps = 22/436 (5%) Query: 24 RLSGPSCFQVCEFI--CKKKKPF-PRKASLRYFF-GLDGRILDKGLLIVFPSPESFTGED 79 RLSGP + V + ++P PR+ L G +D+ L + F P S+T ED Sbjct: 28 RLSGPRSWAVGRALLPWTARRPIIPRRMELGLVVDPASGEAVDQALAVFFRGPHSYTTED 87 Query: 80 SAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET 139 S E H HGG A V ++ LA+ RLA PGEF+ RA G++DL +AE++ L ++++ Sbjct: 88 SVEIHCHGGSACVWRVIG-LAQAQGCRLAGPGEFTMRAMLGGRLDLTQAEAVGRLAAAQS 146 Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE-EDVQNFSSKEVLNDILF 198 +++ RL+M ++G L G + + +EA +DF ++ ++ + L D Sbjct: 147 DIEARLAMAMLAGGLGRALGPARQAIVAAAASVEAAIDFPDDAPELAGPAQATALEDGAA 206 Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 + G+ G K+ I G N GKSSLFNAL + AIV++ PG TRDV+ Sbjct: 207 RPLAALLAGTVGR--AAYWEGAKVAICGRPNVGKSSLFNALLGRQRAIVSERPGATRDVV 264 Query: 259 TIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL----KEINSKKE- 313 L L G +++DTAG+ D +++ G +R + + DL L+L + + S Sbjct: 265 DEVLILGGVACRLADTAGLGPAADELDRLGQERATSFLADCDLALVLLDGSRPLTSADHA 324 Query: 314 -ISFPKNIDFIFIGTKSDLYSTYTEEYDHL-----ISSFTGEGLEELINKI-KSILSNKF 366 ++ ++ + + K+DL + L IS+ +G GL EL + +++ Sbjct: 325 VLALCQDRPRLLVVNKADLPPAWQPSALGLGPTLAISATSGLGLNELARAVAEALCQGAA 384 Query: 367 KKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDIIAENLRLASVSLGKITGCVD 424 + P + + R L + + ++ +A L + ++I+ +L A +LG++ G Sbjct: 385 EPAPGEVVVNARQRAALGRGLAFVRRAVAELGRPEPRPELISLDLAGALAALGEVDGQGA 444 Query: 425 VEQLLDIIFSKFCIGK 440 +++++ +FS FC+GK Sbjct: 445 PDEVIEAVFSTFCVGK 460 >gi|157781555|gb|ABV72132.1| GTP-binding thiophene and furan oxidation protein [Enterococcus raffinosus] Length = 270 Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 91/263 (34%), Positives = 154/263 (58%), Gaps = 7/263 (2%) Query: 19 AISIIRLSGPSCFQVCEFICKK-KKPFPRKASLRYFFG-----LDGRILDKGLLIVFPSP 72 AISI+RLSG ++ + + KK S +G + +++D+ ++ V +P Sbjct: 9 AISIVRLSGDRAVEIADSVYNSGKKCLLDVPSHTIHYGHIIDPANQQVVDEVMVTVMRAP 68 Query: 73 ESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLA 132 ++FT ED E + HGGI VVN +L+ + + RLA PGEF++RAF NG++DL +AE++ Sbjct: 69 KTFTREDIVEINCHGGIVVVNQLLQLILR-SGARLAEPGEFTKRAFLNGRVDLSQAEAVM 127 Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192 DLI ++T+ +++ + G LS L Q ++ + +E ++D+ E +DV+ +++ + Sbjct: 128 DLIRAKTDRAMNVAINQLDGNLSHLIRQLRQEILETLAQVEVNIDYPEYDDVEELTTQLL 187 Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252 L + I + + K G+I+R G I+G N GKSSL N L ++ AIVT+I G Sbjct: 188 LEKAQQVGQQIDALLLNAKQGKILREGLSTAIIGRPNVGKSSLLNYLLHEEKAIVTEIAG 247 Query: 253 TTRDVLTIDLDLEGYLVKISDTA 275 TTRDV+ +++ G +K+ DTA Sbjct: 248 TTRDVIEEYVNVRGVPLKLIDTA 270 >gi|163848366|ref|YP_001636410.1| tRNA modification GTPase TrmE [Chloroflexus aurantiacus J-10-fl] gi|222526288|ref|YP_002570759.1| tRNA modification GTPase TrmE [Chloroflexus sp. Y-400-fl] gi|205829131|sp|A9WKE3|MNME_CHLAA RecName: Full=tRNA modification GTPase mnmE gi|163669655|gb|ABY36021.1| tRNA modification GTPase TrmE [Chloroflexus aurantiacus J-10-fl] gi|222450167|gb|ACM54433.1| tRNA modification GTPase TrmE [Chloroflexus sp. Y-400-fl] Length = 452 Score = 157 bits (397), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 107/290 (36%), Positives = 153/290 (52%), Gaps = 8/290 (2%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-RKASLRY--FFGLDGRIL 61 +TI A++T I IIRLSGP + I + +P R +RY G DG ++ Sbjct: 2 NDTIAAIATPPGEGGIGIIRLSGPDAQSIALRIFRPVRPGRLRSHRVRYGHVIGPDGEVI 61 Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121 D+ LL + +P SFT ED E HGG V LE RLANPGEF+ RAF NG Sbjct: 62 DEALLTLMAAPHSFTREDVVEISCHGGALPVQLTLEAALAA-GARLANPGEFTLRAFLNG 120 Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181 +IDL +AE+ D+I ++T ++ + G L+ + ++I A +DF EE Sbjct: 121 RIDLSQAEATLDVIRAQTSAGLAIAQAQLGGWLAREVRAARTAILEPLAYITALIDFPEE 180 Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 + V I + ++ G ++RNG ++V++G N GKSSL NAL + Sbjct: 181 ----GIEPQTVAGPIEQALATVERLLAGADQGMVLRNGARVVLVGRPNVGKSSLLNALLR 236 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR 291 + AIVT IPGTTRD L +L G V + DTAG+R + D VE+ G++R Sbjct: 237 VERAIVTPIPGTTRDTLEEMANLAGVPVVLIDTAGMRTSTDPVEQIGVER 286 Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust. Identities = 21/38 (55%), Positives = 29/38 (76%) Query: 403 DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D++A +L A+ +LG+ITG E LLD+IFS+FCIGK Sbjct: 415 DLLAADLTGAANALGEITGETVGEDLLDMIFSRFCIGK 452 >gi|269469285|gb|EEZ80798.1| GTPase [uncultured SUP05 cluster bacterium] Length = 325 Score = 157 bits (396), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 106/327 (32%), Positives = 178/327 (54%), Gaps = 13/327 (3%) Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 +++AE++AD+I + +E R ++ +SG S + +R F+EA +DFS+EE + Sbjct: 1 MVQAEAVADIIEANSEQASRSALRSLSGVFSKQVNTLTRAIIELRIFVEATIDFSDEE-I 59 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 S++V +++++ + G I+R G + I G NAGKSSL NAL ++ Sbjct: 60 DFLQSEQVKERAQHIQDEVQEILHSATQGAILREGLNVAIAGKPNAGKSSLLNALTQRSS 119 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIVTDI GTTRDVL + ++G + I DTAG+ E+ D+VEKEGIKR + AD++L+ Sbjct: 120 AIVTDIAGTTRDVLRETIHIDGMPLNIIDTAGLHESQDVVEKEGIKRAIDVIAQADVVLM 179 Query: 305 LKEINSKK-EIS-FPKNID---FIFIGTKSDLYSTY----TEEYDHLISSFTGE--GLEE 353 + + + + S P+ +D + I K DL + E+ +S E G++ Sbjct: 180 MYDAQDQSPDFSLLPEKLDLKKLLVIKNKIDLTNERPGRCIEQGKTQLSICAKEIQGVDL 239 Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLAS 413 L ++ ++ + + KRH+ L +++ + A L + ++++AE+LR A Sbjct: 240 LRQELAD-MAGLDSGAEGVVLARKRHIIALEESLEAINNALLQLEGGAIELMAEDLRHAG 298 Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++G ITG + LL IFS FCIGK Sbjct: 299 QAMGSITGEFSSDDLLGEIFSSFCIGK 325 >gi|157781611|gb|ABV72160.1| GTP-binding thiophene and furan oxidation protein [Enterococcus asini] Length = 270 Score = 156 bits (395), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 95/272 (34%), Positives = 155/272 (56%), Gaps = 9/272 (3%) Query: 11 VSTGALPSAISIIRLSGPSCFQVCEFIC----KKKKPFPRKASLRYFFGLDGR---ILDK 63 +ST AISI+RLSG + + I K+ P ++ Y +D + LD+ Sbjct: 1 ISTPPGEGAISIVRLSGDQAVAIADGIYHMGQKRLTQVPSH-TIHYGHIVDPKNEKTLDE 59 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 ++ V +P++FT ED E + HGG+ V N IL+ L RLA PGEF++RAF NG++ Sbjct: 60 VMVTVLRAPKTFTREDIVEINCHGGMVVTNQILQ-LVLRCGARLAEPGEFTKRAFLNGRM 118 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEED 183 DL +AE++ DLI ++T+ L++ + G LS L ++ + + +E ++D+ E +D Sbjct: 119 DLSQAEAVMDLIRAKTDKAMDLALTQLDGNLSHLIRNLRQEILNTLAQVEVNIDYPEYDD 178 Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 V+ ++K +L ++ I + + G+I+R G I+G N GKSSL N L ++ Sbjct: 179 VEELTTKLLLEKAQEVQGQIDGLLQTAQQGKILREGLSTAIIGRPNVGKSSLLNYLLDEE 238 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 AIVT+I GTTRDV+ +++ G +K+ DTA Sbjct: 239 KAIVTEIAGTTRDVIEEYVNVRGVPLKLVDTA 270 >gi|255660441|ref|ZP_05405850.1| tRNA modification GTPase TrmE [Mycoplasma genitalium G37] Length = 388 Score = 156 bits (394), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 123/395 (31%), Positives = 212/395 (53%), Gaps = 20/395 (5%) Query: 57 DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRR 116 + + +D LL F SP S+TGED E HG + +VN I L K + A PGEF++R Sbjct: 3 NNKRIDDVLLFKFVSPNSYTGEDLIEISCHGNMLIVNEICALLLKKGGV-YAKPGEFTQR 61 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 +F NGK+ L +A ++ LI S + + + + ++GE+ Q ++ + +E ++ Sbjct: 62 SFLNGKMSLQQASAVNKLILSPNLLVKDIVLNNLAGEMDQQLEQIAQQVNQLVMQMEVNI 121 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D+ E D Q + N + + + I K + + + +KI I+G +N GKSSL Sbjct: 122 DYPEYLDEQ-VELSTLNNKVKLIIEKLKRIIENSKQLKKLHDPFKIAIIGETNVGKSSLL 180 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 NAL +D AIV++I G+TRDV+ D +L GYL+KI DTAGIR+ +EK GIK++F + Sbjct: 181 NALLNQDKAIVSNIKGSTRDVVEGDFNLNGYLIKILDTAGIRKHKSGLEKAGIKKSFESI 240 Query: 297 ENADLIL-LLKEINSKKEISF-----PKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEG 350 + A+L++ LL + KK++ DF K DL T ++++ IS+ + Sbjct: 241 KQANLVIYLLDATHPKKDLELISFFKKNKKDFFVFYNKKDL---ITNKFENSISA-KQKD 296 Query: 351 LEELINKIKSILSNKFKKLP---FSIPSHKRHLYH--LSQTVRYLEMASLNEKDCGLDII 405 ++EL++ + ++ +KK+ + I + ++ L Q ++L+ +K D++ Sbjct: 297 IKELVDLLTKYINEFYKKIDQKIYLIENWQQILIEKIKEQLEQFLKQQ---KKYLFFDVL 353 Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +LR A + K+ G L++ IF+ FC+GK Sbjct: 354 VTHLREAQQDILKLLGKDVGFDLVNEIFNNFCLGK 388 >gi|119952977|ref|YP_945186.1| tRNA modification GTPase TrmE [Borrelia turicatae 91E135] gi|254811472|sp|A1QYX4|MNME_BORT9 RecName: Full=tRNA modification GTPase mnmE gi|119861748|gb|AAX17516.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase [Borrelia turicatae 91E135] Length = 464 Score = 156 bits (394), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 143/466 (30%), Positives = 235/466 (50%), Gaps = 35/466 (7%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA--SLRYFFGLDGRI 60 ++ I A++T L SA+ +IR SG S + + K + ++ Y + +D I Sbjct: 6 QREDDIVALATPLLSSALCVIRSSGISSIEKFSKMFSDPKRLLEASGHTIHYGYLIDKEI 65 Query: 61 ---LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 LD+ ++ ++ +P+SFTG++S E HG + I+ K+ R+A PGEF+ RA Sbjct: 66 CEKLDEVVVCIYRAPKSFTGQNSIEVMAHGSPIGIKRIIGCFLKV-GFRMAEPGEFTLRA 124 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F GK+DL +AE++ +LIS++T L++ +SG L + + + S + LD Sbjct: 125 FLAGKLDLTKAEAVNELISAKTNKTHSLAVNKLSGSLFAKIDLIKKDILNFLSALSVHLD 184 Query: 178 F--SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 + SE E F D L K + S+ + KL G +V+ G N GKSSL Sbjct: 185 YETSEYEVAIPFEIISKSRDEL--KRLVDSYNTARKLDY----GIALVLAGSVNVGKSSL 238 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 FN L K+D AIV+ GTTRD + + +G L + DTAG+RET D VE+ GI ++ Sbjct: 239 FNLLLKEDRAIVSSYAGTTRDYIQASFEFDGILFNVFDTAGLRETTDFVEQLGIVKSNSL 298 Query: 296 VENADLILLLKEINSKKEISFPKNID-------FIFIGTKSDL---------YSTYTEEY 339 ++ A L+L + +++++ K ID IF+ K DL +++ Sbjct: 299 IKEASLVLYVIDLSARLTNDDLKFIDSYKGHSKVIFVLNKMDLEPNRQTVEFFNSGNINS 358 Query: 340 DHL--ISSFTGEGLEELINKIKSILSNKFKKLPFS--IPSHKRHLYHLSQTVRY-LEMAS 394 +L IS+ T G++ L +KI+S+ + + I S R L + +E+ + Sbjct: 359 SNLVKISTKTLFGIDSLYDKIRSLTCFDYIDIDAYDVIVSSSRQAELLKKAYTLIIELLN 418 Query: 395 LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 EKD D++A ++ LG+ITG V E +L+ +F FC+GK Sbjct: 419 KIEKDISYDMLAFDVYEVLNFLGEITGEVTSEDVLNNMFKNFCLGK 464 >gi|253582574|ref|ZP_04859795.1| thiophene/furan oxidation protein ThdF [Fusobacterium varium ATCC 27725] gi|251835444|gb|EES63984.1| thiophene/furan oxidation protein ThdF [Fusobacterium varium ATCC 27725] Length = 293 Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 99/291 (34%), Positives = 166/291 (57%), Gaps = 7/291 (2%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCE--FICKKKKPFP--RKASLRYFFGLDG-RI 60 +TI A+ST I I+R+SG ++ F K KK + S+ Y DG + Sbjct: 4 DTIAAISTPRGEGGIGIVRISGNHALEILGKIFRPKSKKVIGDLKNFSINYGHLYDGENL 63 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D+ L+ V +P ++T ED E + HGG + +LE + K RL+ GEF+RRAF N Sbjct: 64 IDEVLVSVMKAPNTYTKEDMVEINCHGGFVITEKVLETVLK-NGARLSESGEFTRRAFLN 122 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 G++DL +AE++ D+I +TE LS+E + G+L + + + I LD+ E Sbjct: 123 GRLDLTQAEAVMDIIHGKTEKSVSLSLEQLRGDLKEQIEHLKKLVLDVAAHINVVLDYPE 182 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E + + + +++++ + + + I G++I+ G K I+G N GKSS+ N++ Sbjct: 183 E-GIDDPLPENLVDNLKEVMDTTDALIKSYDKGKMIKEGIKTAIVGKPNVGKSSILNSVL 241 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR 291 K++ AIVT + GTTRDV+ ++L+G + + DTAGIR+TDD+VE G+++ Sbjct: 242 KEERAIVTHVAGTTRDVIEEVVNLKGIPLVLVDTAGIRKTDDLVENIGVEK 292 >gi|295103710|emb|CBL01254.1| tRNA modification GTPase TrmE [Faecalibacterium prausnitzii SL3/3] Length = 456 Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 132/460 (28%), Positives = 223/460 (48%), Gaps = 28/460 (6%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK 63 + TI A++T I+++RLSG + V + P + + + L G +D+ Sbjct: 2 QGSTIAAIATPPGAGGIAVVRLSGAESYAVAARVFHPANPAKKVEQAKGYTALFGHFVDR 61 Query: 64 ------GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 G+ + F +P S+TGED E HGG AV ++E A GE++RRA Sbjct: 62 EEAFDEGVALFFRAPHSYTGEDVVELSCHGGSAVARRLVEACLAAGAQPAAP-GEYTRRA 120 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NGK+ L +AE++ DLI+++ L+ + G L+ +LT +++ + A +D Sbjct: 121 FLNGKLGLTQAEAVMDLIAADGRRGAALANAALGGALAKKINAQKAQLTALQAHLAAWVD 180 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 F EE DV + + ++ ++ I G ++R G I+G NAGKS+L N Sbjct: 181 FPEE-DVPELDPAHLRTVLGAVREELDGLIRSYDAGAVLREGVDCAIVGRPNAGKSTLLN 239 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 LA D AIVT + GTTRDV+ + L + + DTAG+RET+D +E EGI+R++ ++E Sbjct: 240 LLAGFDRAIVTPVAGTTRDVVEQAVQLGDIRLNLFDTAGLRETEDAIEAEGIRRSWKKLE 299 Query: 298 NADLILLL---KEINSKKEISFPKNI---DFIFIGTKSDLYSTYTEEYDHLISSFTGEGL 351 A LIL + E S+++++ + I + K D + + E LI+ + L Sbjct: 300 EAGLILAVFDGSEPPSREDLALAQRCAGRPAIALVNKEDKPTQFDAE---LIAPYFAMVL 356 Query: 352 EELINK--IKSILSNKFKKL--PFSIPSHKRHL---YHLSQTVRYLE----MASLNEKDC 400 + + +++ +L SI H L LS +R + Sbjct: 357 PVCCREEGSRKVIAAAVARLLGTGSIDPHAASLSGQRQLSAALRARDAVAGALDAAAGGF 416 Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 GLD ++ + A +L +TG E +++ +F +FC+GK Sbjct: 417 GLDAVSVCVDDALDALCDLTGENASEAVIEQVFERFCVGK 456 >gi|157781549|gb|ABV72129.1| GTP-binding thiophene and furan oxidation protein [Enterococcus avium] gi|157781551|gb|ABV72130.1| GTP-binding thiophene and furan oxidation protein [Enterococcus avium] Length = 270 Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 93/271 (34%), Positives = 155/271 (57%), Gaps = 7/271 (2%) Query: 11 VSTGALPSAISIIRLSGPSCFQVCEFICKK-KKPFPRKASLRYFFGL-----DGRILDKG 64 +ST AISI+RLSG + + + KK S +G + I+D+ Sbjct: 1 ISTPPGEGAISIVRLSGDHAVAIADSVYHSGKKSLLDVPSHTIHYGHIIDPEEQEIVDEV 60 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 ++ V +P++FT ED E + HGGI VVN +L+ + + RLA PGEF++RAF NG++D Sbjct: 61 MVSVMRAPKTFTREDIVEINCHGGIVVVNQLLQLILR-SGARLAEPGEFTKRAFLNGRVD 119 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDV 184 L +AE++ DLI ++T+ +++ + G LS L + ++ + +E ++D+ E +DV Sbjct: 120 LSQAEAVMDLIRAKTDRAMSVAINQLDGNLSHLIRRLRQEILETLAQVEVNIDYPEYDDV 179 Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + +++ +L + I + + K G+I+R G I+G N GKSSL N L ++ Sbjct: 180 EELTTQLLLEKAQQVGQQIDALLLNAKQGKILREGLSTAIIGRPNVGKSSLLNYLLHEEK 239 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 AIVT+I GTTRDV+ +++ G +K+ DTA Sbjct: 240 AIVTEIAGTTRDVIEEYVNVRGVPLKLIDTA 270 >gi|160944275|ref|ZP_02091504.1| hypothetical protein FAEPRAM212_01784 [Faecalibacterium prausnitzii M21/2] gi|158444457|gb|EDP21461.1| hypothetical protein FAEPRAM212_01784 [Faecalibacterium prausnitzii M21/2] Length = 456 Score = 153 bits (387), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 130/444 (29%), Positives = 218/444 (49%), Gaps = 28/444 (6%) Query: 20 ISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDK------GLLIVFPSPE 73 I+++RLSG +QV + P + + + L G +D+ G+ + F +P Sbjct: 18 IAVVRLSGAESYQVAARVFHPANPAKKVEEAKGYTALFGHFVDREEAFDEGVALFFRAPH 77 Query: 74 SFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLAD 133 S+TGED E HGG AV ++E A GE++RRAF NGK+ L +AE++ D Sbjct: 78 SYTGEDVVELSCHGGNAVARRLVEACLAAGAQPAAP-GEYTRRAFLNGKLGLTQAEAVMD 136 Query: 134 LISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193 LIS++ L+ + G L+ +LT +++ + A +DF EE DV + Sbjct: 137 LISADGRQGAALANAALGGALAKKINAQKAQLTALQAHLAAWVDFPEE-DVPELDPAHLR 195 Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253 + ++ ++ + I G ++R G I+G NAGKS+L N LA D AIVT + GT Sbjct: 196 TVLGAVREELDALIRGYDAGAVLREGVDCAIVGRPNAGKSTLLNLLAGFDRAIVTPVAGT 255 Query: 254 TRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL---KEINS 310 TRDV+ + L + + DTAG+RET+D +E EGI+R++ ++E A LIL + E S Sbjct: 256 TRDVVEQAVQLGDIRLNLFDTAGLRETEDAIEAEGIRRSWKKLEEAGLILAVFDGSEPPS 315 Query: 311 KKEISFPKNI---DFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINK--IKSILSNK 365 +++++ + I + K D + + E LI+ + L + + +++ Sbjct: 316 REDLALAQRCAGRPAIALVNKEDKPTRFDAE---LIAPYFAMVLPVCCREEGSRKVIAAA 372 Query: 366 FKKL--PFSIPSHKRHL---YHLSQTVRYLE----MASLNEKDCGLDIIAENLRLASVSL 416 +L SI H L LS +R + GLD ++ + A +L Sbjct: 373 VARLLGTGSIDPHAASLSGQRQLSAALRARDAVAGALDAAAGGFGLDAVSVCVDDALDAL 432 Query: 417 GKITGCVDVEQLLDIIFSKFCIGK 440 +TG E +++ +F +FC+GK Sbjct: 433 CDLTGENASEAVIEQVFERFCVGK 456 >gi|148668862|gb|EDL01030.1| GTP binding protein 3, isoform CRA_b [Mus musculus] Length = 236 Score = 152 bits (385), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 80/162 (49%), Positives = 104/162 (64%), Gaps = 2/162 (1%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-RKASLRYF-FGLDGRILDKG 64 TIFA+S+G AI++IR SGP+ + ++P P R+A LR G LD+ Sbjct: 30 TIFALSSGQGRCAIAVIRTSGPASGLALRSLTALQEPPPARRACLRLLRHPCSGEPLDRS 89 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 L++ FP P+SFTGED EFHVHGG AVV+G+L+ L +P LR A GEF+RRAF +GK+ Sbjct: 90 LVLWFPGPQSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFAHGKLS 149 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLT 166 L E E LADLI +ETE QRR ++ + GELS L W LT Sbjct: 150 LTEVEGLADLIRAETEAQRRQALRQLDGELSQLCQGWAKTLT 191 >gi|62024520|gb|AAH92042.1| Gtpbp3 protein [Mus musculus] Length = 241 Score = 152 bits (385), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 80/162 (49%), Positives = 104/162 (64%), Gaps = 2/162 (1%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-RKASLRYF-FGLDGRILDKG 64 TIFA+S+G AI++IR SGP+ + ++P P R+A LR G LD+ Sbjct: 35 TIFALSSGQGRCAIAVIRTSGPASGLALRSLTALQEPPPARRACLRLLRHPCSGEPLDRS 94 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 L++ FP P+SFTGED EFHVHGG AVV+G+L+ L +P LR A GEF+RRAF +GK+ Sbjct: 95 LVLWFPGPQSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEAGEFTRRAFAHGKLS 154 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLT 166 L E E LADLI +ETE QRR ++ + GELS L W LT Sbjct: 155 LTEVEGLADLIRAETEAQRRQALRQLDGELSQLCQGWAKTLT 196 >gi|313621862|gb|EFR92546.1| tRNA modification GTPase MnmE [Listeria innocua FSL J1-023] Length = 340 Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 105/344 (30%), Positives = 184/344 (53%), Gaps = 25/344 (7%) Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NG+IDL +AE++ DLI ++T+ +++ M G LS L ++ + +E ++D Sbjct: 1 FLNGRIDLSQAEAVMDLIRAKTDRAMGVAIRQMDGNLSRLIRNLRQEILDALAQVEVNID 60 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 + E +DV+ + + +L ++ + + G+I+R G I+G N GKSSL N Sbjct: 61 YPEYDDVEEMTQRMLLEKTELVRASVEQLLQTASQGKILREGLATAIIGRPNVGKSSLLN 120 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 L +++ AIVTDI GTTRD++ +++ G +++ DTAGIRET+DIVEK G++R+ + Sbjct: 121 QLIQEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETEDIVEKIGVERSRKALA 180 Query: 298 NADLILLLKEINSKKEISFPKNI--------DFIFIGTKSDLYSTYTEEYDHL------- 342 +AD ILL+ +N +E++ +++ + K+DL + + D + Sbjct: 181 DADFILLV--LNQNEELTVEDEALFEAAAGHNYVVVLNKTDLETKL--DIDRVRELAGEN 236 Query: 343 ----ISSFTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN- 396 S EGLE L IK++ + + S+ RH+ L Q + L + Sbjct: 237 PIVATSLVNDEGLEALEEAIKALFFAGDIDAGDATYVSNVRHIALLHQALEALNGVTTGI 296 Query: 397 EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + +DI+ ++ A LG+ITG ++LLD +F++FC+GK Sbjct: 297 QLGMPVDIVQIDMTRAWDLLGEITGDSVQDELLDQLFNQFCLGK 340 >gi|320102561|ref|YP_004178152.1| GTP-binding protein TrmE [Isosphaera pallida ATCC 43644] gi|319749843|gb|ADV61603.1| GTP-binding protein TrmE [Isosphaera pallida ATCC 43644] Length = 526 Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 145/521 (27%), Positives = 239/521 (45%), Gaps = 89/521 (17%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVC--EFICKKKKPFPRKAS----------LRY 52 ++TI A+S+ P+A I+R+SGP + V F + P A+ + Sbjct: 10 EDTIAAISSPHGPAARGILRISGPRAWSVALARFTPRAHVGDPVGATSTVSWTPGVHAGW 69 Query: 53 FFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAK----------M 102 F L+ L + +P +FTG+D AE+H+ G ++N LE + Sbjct: 70 FHALEIATPIPAELTLGRAPRTFTGQDLAEWHLPGSEPLLNAALETILTENVDVSSELVA 129 Query: 103 PNL-------------------RLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQR 143 PNL R A PGEF+ RA+ GK+DL++AE++ +++ + T + Sbjct: 130 PNLGEFSNPEATQAFSTRRGRVRSARPGEFTLRAYLAGKLDLIQAEAVWEVVHATTPQRL 189 Query: 144 RLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDI 203 R +++ ++G L S + L + + IEA+LDF +E DV +++ + + + Sbjct: 190 RAALDRLAGGLGSPLLETRSDLLDVLAIIEANLDFVDEADVDPVELAQLVAVLDHQRERL 249 Query: 204 SSHISQGKLGEIIRNGY--KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261 + +G+ E R+G ++VI+G NAGKS LFNAL D A+V+ + GTTRD L Sbjct: 250 RQLLERGRARE--RDGRVPRVVIVGAPNAGKSCLFNALLGSDRALVSPVVGTTRDYLAEP 307 Query: 262 LDL---------EGYLVKISDTAG------IRETDDIVEKE--------------GIKRT 292 L L E ++V++ DTAG + +TD E +R+ Sbjct: 308 LQLPADESDPASEPFVVELIDTAGDERLETLWDTDPPPHSEPRPAPLESIRHQADAARRS 367 Query: 293 FLEVENADLILLLKEINSKKE---ISFPKNI--DFIFIGTKSDLYSTY-TEEYDH----- 341 LE ADL+L ++ I++ D + +GTK DL + E+ H Sbjct: 368 QLEA--ADLVLRCWAHDAPPTPELIAWRPGPGQDLLEVGTKGDLDQRHCASEHRHHQVLD 425 Query: 342 -LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKD 399 + S+ TGEGL+EL I L+++ + R L + L+ A+ + Sbjct: 426 VITSTATGEGLKELRRLIVRRLADRIQDEDEEAALPARVTEGLRNALAALDRAAWAVAQG 485 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L++ A +L A LG + G + +LD IF +FCIGK Sbjct: 486 RDLELAAVDLAQAINDLGAVVGIEVEDDILDRIFQRFCIGK 526 >gi|313112541|ref|ZP_07798206.1| tRNA modification GTPase TrmE [Faecalibacterium cf. prausnitzii KLE1255] gi|310625141|gb|EFQ08431.1| tRNA modification GTPase TrmE [Faecalibacterium cf. prausnitzii KLE1255] Length = 475 Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 131/460 (28%), Positives = 222/460 (48%), Gaps = 28/460 (6%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDG----- 58 ++ TI A++T I+++RLSG + + + + + + + + + G Sbjct: 21 QETTIAAIATAPGAGGIAVVRLSGAESYPIAARVFRPANAAKKVENAKGYTAMYGTFREG 80 Query: 59 -RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 D+G+ + F +P S+TGED E HGG AV ++E A GE++RRA Sbjct: 81 DEAFDEGVALFFRAPHSYTGEDVVELSCHGGSAVARRLVEACLAAGAQPAAP-GEYTRRA 139 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F NGK+ L +AE++ DLIS++ L+ + G L+ + LT I++ + A +D Sbjct: 140 FLNGKLGLTQAEAVMDLISADGRQGAALANAALGGALAKKISAQKEALTAIQAHLAAWVD 199 Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 F EE DV + + +K ++ I + ++R G I+G NAGKS+L N Sbjct: 200 FPEE-DVPELDGDHLHRVLSGVKAELDELIHNYQADTVLREGVDCAIVGRPNAGKSTLLN 258 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 LA D AIVT + GTTRDV+ + L + + DTAG+RET+D +E EGI+R++ ++E Sbjct: 259 LLAGFDRAIVTPVAGTTRDVVEQAVQLGDIQLNLFDTAGLRETEDAIEAEGIRRSWKKLE 318 Query: 298 NADLILLL---KEINSKKEISFPKNI---DFIFIGTKSDLYSTYTEEYDHLISSFTGEGL 351 A LIL + E +++++ + I + K D + + E LI+ L Sbjct: 319 EAGLILAVFDGSEPPTREDLELAQRCTGRPAIALINKEDKPTQFDAE---LIAPCFAMVL 375 Query: 352 EELINKIKS--ILSNKFKKL--PFSIPSHKRHL---YHLSQTVRYLE----MASLNEKDC 400 + +S ++S +L I H L LS +R + Sbjct: 376 PVCCQEEESRKVISAAVARLLGTSQIDPHAASLSGQRQLSAALRARDAVAGALDAAAGGF 435 Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 GLD ++ + A +L +TG E +++ +F +FC+GK Sbjct: 436 GLDAVSVCVDDALAALCDLTGENASEAVIEQVFERFCVGK 475 >gi|149036123|gb|EDL90789.1| rCG38694, isoform CRA_b [Rattus norvegicus] Length = 208 Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 79/162 (48%), Positives = 102/162 (62%), Gaps = 2/162 (1%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP-RKASLRYF-FGLDGRILDKG 64 TIFA+S+G AI++IR SGP+ + ++P P R A LR G LD+ Sbjct: 35 TIFALSSGQGRCAIAVIRTSGPASGLALRSLTALREPPPARSACLRLLRHPCSGEPLDRS 94 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 L++ FP P+SFTGED E HVHGG AVV+G+L+ L +P LR A GEF+RRAF +GK+ Sbjct: 95 LVLWFPGPQSFTGEDCMELHVHGGPAVVSGVLQALGSVPGLRPAKAGEFTRRAFAHGKLS 154 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLT 166 L E E LADLI +ETE QRR ++ + GELS L W LT Sbjct: 155 LTEVEGLADLIHAETEAQRRQALRQLDGELSQLCQGWAKTLT 196 >gi|261368861|ref|ZP_05981744.1| tRNA modification GTPase TrmE [Subdoligranulum variabile DSM 15176] gi|282569034|gb|EFB74569.1| tRNA modification GTPase TrmE [Subdoligranulum variabile DSM 15176] Length = 389 Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 100/312 (32%), Positives = 167/312 (53%), Gaps = 11/312 (3%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYF------F 54 M+ ++TI A++T I++IR+SGP + + E + + R A + + + Sbjct: 1 MDRLEQTICALATPPGEGGIAVIRVSGPDAYPIVEKVFVPVRQGRRVAQAKGYTAMLGHY 60 Query: 55 GLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114 L G +D+ + + + +P S+TGED E VHGG A+ G+LE L EF+ Sbjct: 61 TLRGEEMDETVALFYRAPHSYTGEDVIELSVHGGTAMAEGLLEALLLAGAAPAGPG-EFT 119 Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174 RRA E+GK+ L +AE++ ++I++ L+ + G L+ G L + + + A Sbjct: 120 RRALEHGKLSLTQAEAVMEVIAANGRQGAALAKSALDGRLAKRIGSIQAALQSLNAHLTA 179 Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234 +D+ EE DV S + +L K ++ I+ G ++R+G V+LG N GKS+ Sbjct: 180 WVDYPEE-DVPELSDAALTGTLLTQKAELDDLIAGYGAGAVLRHGVDCVLLGRPNVGKST 238 Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKR 291 L N LA D AIVT + GTTRD++ + L + + DTAG+RE D +E EGI+R Sbjct: 239 LLNLLAGFDRAIVTPVAGTTRDIVEQAVQLGEIRLNLFDTAGVREVGADGDAIEAEGIRR 298 Query: 292 TFLEVENADLIL 303 ++ +++ A L+L Sbjct: 299 SWKKLDEAGLVL 310 >gi|207342423|gb|EDZ70194.1| YMR023Cp-like protein [Saccharomyces cerevisiae AWRI1631] Length = 290 Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 95/256 (37%), Positives = 144/256 (56%), Gaps = 24/256 (9%) Query: 4 EKETIFAVSTGA-LPSAISIIRLSGPSC-FQVCEFICKKKKPFPRKASLRYFFGLDGR-- 59 ++ TI+A+ST A SAI+IIR+SG + + P RKA LR + Sbjct: 35 QQPTIYALSTPANQTSAIAIIRISGTHAKYIYNRLVDSSTVPPIRKAILRNIYSPSSCSV 94 Query: 60 ----------ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKM------P 103 +LD LL+ F +P SFTGED E HVHGG AVVN IL+ + + Sbjct: 95 KPHDQKESKILLDTSLLLYFQAPYSFTGEDVLELHVHGGKAVVNSILKAIGSLHDRSSGK 154 Query: 104 NLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWID 163 ++R A PG+FSRRAF+NGK DL + E + DLI SETE QRR ++ +G+ L+ W + Sbjct: 155 DIRFALPGDFSRRAFQNGKFDLTQLEGIKDLIDSETESQRRSALSSFNGDNKILFENWRE 214 Query: 164 KLTHIRSFIEADLDFSEE--EDVQNFSS--KEVLNDILFLKNDISSHISQGKLGEIIRNG 219 + + + A +DF+++ +++QN V +I+ L++ I + + + + I++NG Sbjct: 215 TIIENMAQLTAIIDFADDNSQEIQNTDEIFHNVEKNIICLRDQIVTFMQKVEKSTILQNG 274 Query: 220 YKIVILGHSNAGKSSL 235 K+V+LG N GKSSL Sbjct: 275 IKLVLLGAPNVGKSSL 290 >gi|32477206|ref|NP_870200.1| tRNA modification GTPase TrmE [Rhodopirellula baltica SH 1] gi|81659201|sp|Q7UJI3|MNME_RHOBA RecName: Full=tRNA modification GTPase mnmE gi|32447757|emb|CAD77275.1| probable tRNA modification GTPase trmE [Rhodopirellula baltica SH 1] Length = 465 Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 132/478 (27%), Positives = 226/478 (47%), Gaps = 62/478 (12%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK----------KPFPRKASLRYFFG 55 +TI A+++ P+ I+RLSG C V +C+ K +PF +L Sbjct: 7 DTIAAIASPMTPAPRGIVRLSGHDCIDV---LCRMKVLDTDEASGRRPFRSSKTLSLGEP 63 Query: 56 LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 L +D ++V+P+ S+TG+ SAE H+ G ++ L+ + R A PGEF+ Sbjct: 64 LGAIEVD---VMVWPTQRSYTGQPSAELHLIGSAPLLQSSLDAAIRA-GARAARPGEFTM 119 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 R+F G++DL +AE++ +I +E ++ ++G LS L + + +EA Sbjct: 120 RSFLAGRLDLTQAEAVLGVIEAEDRGTLDQALSQLAGNLSRPLQAARSTLLDLLADVEAG 179 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQ----GKLGEIIRNGYKIVILGHSNAG 231 LDF +E D++ S + ++ + L++ + SQ G IR +V+ G NAG Sbjct: 180 LDFVDE-DIEFISDEALIQRLDELRSLLLQTRSQLSDRGGASSTIR----VVLRGLPNAG 234 Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG--IRETDD------- 282 KS L N L++ + AIVTD GTTRD++T++ G+ ++ DTAG RE D Sbjct: 235 KSRLLNVLSRTESAIVTDQAGTTRDLVTVESSWGGHSFQLIDTAGSESREESDPEAPISQ 294 Query: 283 --------IVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYST 334 + ++ D LK N+ ++ I + TK DL T Sbjct: 295 EAQLQAAEAARGADVHVWCIDATGGDGFESLKSPNAVL-AEAKRSAQLICVATKRDLMPT 353 Query: 335 ----YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI--------PSHKRHLYH 382 + D +SS +G G++ LI ++ + S+ S + H Sbjct: 354 DWNGESMRADLAVSSESGTGVDSLIERLVQFAEQRDAGETGSVIGTAARCQDSLAAAIEH 413 Query: 383 LSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L+Q +++ E A+ G +++A +RLA ++G++TG V + +LD +F +FCIGK Sbjct: 414 LAQAIQWTEQAA------GHELVAAEMRLAVEAIGEVTGQVYTDDILDRVFGRFCIGK 465 >gi|327540499|gb|EGF27081.1| tRNA modification GTPase TrmE [Rhodopirellula baltica WH47] Length = 465 Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 132/478 (27%), Positives = 227/478 (47%), Gaps = 62/478 (12%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK----------KPFPRKASLRYFFG 55 +TI A+++ P+ I+RLSG C V +C+ K +PF +L Sbjct: 7 DTIAAIASPMTPAPRGIVRLSGHDCIDV---LCRMKLLDTDEASGRRPFRSSKTLSLREP 63 Query: 56 LDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 L +D ++V+P+ S+TG+ SAE H+ G ++ L+ + R A PGEF+ Sbjct: 64 LGAIEVD---VMVWPTQRSYTGQPSAELHLIGSAPLLQSSLDAAIRA-GARAARPGEFTM 119 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 R+F G++DL +AE++ +I +E ++ ++G LS L + + +EA Sbjct: 120 RSFLAGRLDLTQAEAVLGVIEAEDRGTLDQALSQLAGNLSRPLQAARSTLLDLLADVEAG 179 Query: 176 LDFSEEEDVQNFSSKEV---LNDILFLKNDISSHIS-QGKLGEIIRNGYKIVILGHSNAG 231 LDF +E D++ S + + L+++ L S +S +G IR +V+ G NAG Sbjct: 180 LDFVDE-DIEFISDEALIQRLDELRTLLLQTRSQLSDRGGASSTIR----VVLRGLPNAG 234 Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI--RETDD------- 282 KS L N L++ + AIV D GTTRD++T++ G+ ++ DTAG+ RE D Sbjct: 235 KSRLLNVLSRTESAIVNDQAGTTRDLVTVESSWGGHSFQLIDTAGLESREESDPEAPISQ 294 Query: 283 --------IVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYST 334 + ++ D LK N+ ++ I + TK DL T Sbjct: 295 EAQLQAAEAARGADVHVWCIDATGGDGFESLKSPNAVL-AEAKRSAQLICVATKRDLMPT 353 Query: 335 ----YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI--------PSHKRHLYH 382 + D +SS +G G++ LI ++ + S+ S + H Sbjct: 354 DWNGESMRADLAVSSESGAGIDSLIEQLVQFAEQRDAGETGSVIGTAARCQDSLAAAIEH 413 Query: 383 LSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L+Q +++ E A+ G +++A +RLA ++G++TG V + +LD +F +FCIGK Sbjct: 414 LAQAIQWTEQAA------GHELVAAEMRLAVEAIGEVTGQVYTDDILDRVFGRFCIGK 465 >gi|147772302|emb|CAN64562.1| hypothetical protein VITISV_038233 [Vitis vinifera] Length = 434 Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 117/359 (32%), Positives = 189/359 (52%), Gaps = 36/359 (10%) Query: 111 GEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRS 170 GEF+ RAF NG++DL +AE++ LIS+++ ++ G+ G SSL + + + Sbjct: 55 GEFTLRAFLNGRLDLSQAENVGKLISAKSIAAADAALAGIQGGFSSLVRSLRIQCIELLT 114 Query: 171 FIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIV-ILGHSN 229 IEA LDF +E + +++ I + D+ + + +++++G +++ I+G N Sbjct: 115 EIEARLDFDDE--MPPLDLNLIMDKIHXMSQDVENALETANYDQLLQSGLQVIAIIGRPN 172 Query: 230 AGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGI 289 GKSSL NA +K + AIVT+I GTTRDV+ + + G V + DTAGIRETDDIVEK G+ Sbjct: 173 VGKSSLLNAWSKSERAIVTEIAGTTRDVVEASVSIHGIPVTLLDTAGIRETDDIVEKIGV 232 Query: 290 KRTFLEVENADLILLL----------------KEINSKK--EISFPKNIDFIFIGTKSDL 331 +R+ +AD+I++ + I++KK E S P I + K D Sbjct: 233 ERSEAVAISADVIIMTISALDGWTSQDTKLFNRIISNKKFVESSTP----VILVVNKIDC 288 Query: 332 YSTYTEEYDHLISSF---------TGEGLEELINKIKSILS-NKFKKLPFSIPSHKRHLY 381 + E +SF TG+G+ +L + I I+ NK ++R Sbjct: 289 APSACTELFMXGNSFSKHIFTCAVTGQGISDLESAIIEIVGLNKIPAGGRRWTVNQRQCE 348 Query: 382 HLSQTVRYL-EMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIG 439 L +T L + S E++ LD +LR A+++LG+I+G E++L IF KFCIG Sbjct: 349 QLVRTKEALARLISSIEEEMPLDFWTIDLREAALALGQISGEDISEEVLTNIFGKFCIG 407 >gi|269468659|gb|EEZ80299.1| GTPase [uncultured SUP05 cluster bacterium] Length = 203 Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 80/192 (41%), Positives = 117/192 (60%), Gaps = 4/192 (2%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+H + TI A+++ I I+R+SG C ++ + + P PR A FF DG Sbjct: 1 MSHNETTICALASSTGQGGIGIVRVSGARCIEIAKKMLGHV-PKPRYAHYGSFFNQDGVE 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +DKG+ + FP+P SFTGED EF HGGI V+ +LE + ++ A PGEFS+RAF N Sbjct: 60 IDKGVALFFPAPNSFTGEDVLEFQGHGGILVMRSLLESAMALGSIA-AEPGEFSKRAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GK+DLL+AE++ADLI + +E R ++ +SGE S L +R F+EA +DFS+ Sbjct: 119 GKMDLLQAEAVADLIDASSEQSARSALRSLSGEFSDQVNALTKALIELRVFVEATIDFSD 178 Query: 181 EEDVQNFSSKEV 192 EE +FS +E+ Sbjct: 179 EE--IDFSDEEI 188 >gi|325108824|ref|YP_004269892.1| tRNA modification GTPase mnmE [Planctomyces brasiliensis DSM 5305] gi|324969092|gb|ADY59870.1| tRNA modification GTPase mnmE [Planctomyces brasiliensis DSM 5305] Length = 471 Score = 147 bits (370), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 139/471 (29%), Positives = 221/471 (46%), Gaps = 46/471 (9%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVC-----------EFICKKKKPFPRKASLRYFF 54 ETI A+++ P I+R+SG + EF ++ K +P + L Sbjct: 11 ETIAALASAPGPGQRGIVRISGEETVALLNSLLEDSPNAPEFDNRRAKRYPVEICL---- 66 Query: 55 GLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114 G G + V+P S+TG+ SAE H+ G +++ +L + K+ R A PGEF+ Sbjct: 67 GERGGSFPMAVH-VWPGQRSYTGQPSAELHLLGAPPILDWLLGRIYKL-GARPAQPGEFT 124 Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174 R+F +G++ L++AE++ +I + Q ++++ ++G +S + D+L + +EA Sbjct: 125 LRSFLSGRLSLVQAEAVLGVIDARGNAQLDVALQQLAGGVSQRMRRMRDQLLEDLADLEA 184 Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234 LDF EED++ E + + +++++ +IV+ G NAGKSS Sbjct: 185 GLDFV-EEDIEFIDRAEFADRLQNWQSEVALLCEAADRRMHSAEEPRIVLAGLPNAGKSS 243 Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294 LFNAL + AIV+DI GTT D L L G V I DTAG + + + + + F Sbjct: 244 LFNAL-TGETAIVSDIEGTTTDYLVGRTQLTGTNVAIFDTAGWETGSNPIGE--LAQVFR 300 Query: 295 E--VENADLILLLKEINSKKEISFPKNIDF----------IFIGTKSDLYSTYTEEYDHL 342 + E ADLI+ + K+ +I F I + TK+D T +H Sbjct: 301 QSGYEQADLIVWCTPADWSKDQRQADDIHFDKLASGAVPTIRVCTKTDRAKAVTTTEEHE 360 Query: 343 ISSFTGE-----------GLEELINKIKSILS-NKFKKLPFSIPSHKRHLYHLSQTVRYL 390 ++ G GL+ L I +S N+ + + R L +T +L Sbjct: 361 DAARNGRFTCGATATQAGGLDALKAAIAEAVSENQGQSQELLGSTAARCRDSLFRTRSHL 420 Query: 391 EMAS-LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 E A L E G + +AE LR A LG I G V + LLD +FSKFCIGK Sbjct: 421 EEACHLAETSLGDEFLAEELRGAIQELGVILGHVYTDDLLDRVFSKFCIGK 471 >gi|257890523|ref|ZP_05670176.1| tRNA modification GTPase mnmE [Enterococcus faecium 1,231,410] gi|257826883|gb|EEV53509.1| tRNA modification GTPase mnmE [Enterococcus faecium 1,231,410] Length = 339 Score = 146 bits (369), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 107/346 (30%), Positives = 194/346 (56%), Gaps = 33/346 (9%) Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 NG++DL +AE++ DLI ++T+ L++ + G LS+L ++ + +E ++D+ Sbjct: 2 NGRVDLSQAEAVMDLIRAKTDKAMGLALNQLDGNLSALIRSLRQEILETLAQVEVNIDYP 61 Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 E +DV+ ++K +L ++ I + ++ K G+++R G I+G N GKSSL N L Sbjct: 62 EYDDVEELTTKLLLEKAQMIQQRIQALLATSKQGKVLREGLSTAIIGRPNVGKSSLLNHL 121 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 +++ AIVTDI GTTRDV+ +++ G +K+ DTAGIRET+D+VE+ G++R+ + A Sbjct: 122 LREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSRKALAEA 181 Query: 300 DLILLL----KEINSKKE--ISFPKNIDFIFIGTKSDLYSTYTEE-YDHL--------IS 344 DLILL+ + + ++ E + + I + K+DL + +E L IS Sbjct: 182 DLILLVLNQSEPLTAEDEQLLEATSGLKRIILLNKTDLPAQLEQEKLKKLIENEPVFSIS 241 Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT--VRYLEMASLNEK---- 398 +GL ++++S +S+ F FS + +R ++S T + LE ASL+ + Sbjct: 242 VAKNDGL----DRLESAISDLF----FSGETGERDATYVSNTRHIALLEKASLSLEEVIA 293 Query: 399 --DCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 D G+ D++ ++ LG++ G ++L+ +FS+FC+GK Sbjct: 294 GIDSGMPVDLVQIDMTRCWDYLGEVVGDSVQDELITQLFSQFCLGK 339 >gi|260902393|ref|ZP_05910788.1| putative tRNA modification GTPase TrmE [Vibrio parahaemolyticus AQ4037] gi|308107141|gb|EFO44681.1| putative tRNA modification GTPase TrmE [Vibrio parahaemolyticus AQ4037] Length = 319 Score = 146 bits (369), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 105/314 (33%), Positives = 161/314 (51%), Gaps = 30/314 (9%) Query: 155 SSLYGQWIDKLT----------HIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDIS 204 + LY ++ D L+ H+R ++EA +DF EEE + + +V D+ + +++ Sbjct: 8 NPLYNRYKDSLSAHPDAGGIAIHLRIYVEAAIDFPEEE-IDFLADGKVAGDLQAIIDNLD 66 Query: 205 SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL 264 + + G I+R G K+VI G NAGKSSL NAL+ K+ AIVTDI GTTRDVL + + Sbjct: 67 AVRKEANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKESAIVTDIAGTTRDVLREHIHI 126 Query: 265 EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL-----KEINSKKEI----- 314 +G + I DTAG+R+ D VEK GI+R + E+ AD +L + + KEI Sbjct: 127 DGMPLHIIDTAGLRDASDEVEKIGIERAWDEIAQADRVLFMVDGTTTDATDPKEIWPDFV 186 Query: 315 -SFPKNIDFIFIGTKSDLYST------YTEEYDHLISSFTGEGLEELINKIKSILSNKFK 367 P++I I K+D + +S+ TG G++ L N +K + Sbjct: 187 DRLPESIGMTVIRNKADQTGEDMGICHVNDPTLIRLSAKTGAGVDALRNHLKECMGFS-G 245 Query: 368 KLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDIIAENLRLASVSLGKITGCVDVE 426 + +RHL L + ++L++ E +I+AE LR+ L +ITG + Sbjct: 246 NTEGGFMARRRHLDALERAAQHLQIGQEQLEGYMAGEILAEELRITQQHLNEITGEFSSD 305 Query: 427 QLLDIIFSKFCIGK 440 LL IFS FCIGK Sbjct: 306 DLLGRIFSSFCIGK 319 >gi|168701783|ref|ZP_02734060.1| tRNA modification GTPase TrmE [Gemmata obscuriglobus UQM 2246] Length = 422 Score = 146 bits (368), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 127/430 (29%), Positives = 207/430 (48%), Gaps = 20/430 (4%) Query: 23 IRLSGPSCFQVCEFICKKKKPFPRKASLRYFF-------GLDGRILDKGLLIVFPSPESF 75 +R+SGP+ V + + P P R F G+ + +L F P+S+ Sbjct: 1 MRVSGPNARAVVARVFAAE-PLPTSPGSRRFVRGVLRLSGVSSPL--PAVLYFFAGPKSY 57 Query: 76 TGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLI 135 TG+D AE H+ G +V ++ +L R A PGEF+ RAF GK DL +AE++ +I Sbjct: 58 TGQDLAELHLVGSPPLVERLISDLLSA-GARPARPGEFTMRAFLAGKKDLPQAEAVQAVI 116 Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND 195 + T+ ++E ++G +S D L ++ + +EA LDF+ +ED++ + + Sbjct: 117 EAGTDSDLSAALEQLAGGVSRPLDALRDDLLNLLADVEAALDFA-DEDIEFVTQAATVAR 175 Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255 + + Q + ++ ++G NAGKSSLFNALA A+V+ + GTTR Sbjct: 176 VRGAVEHLEMVRKQLDARTLSGRSVRVALVGLPNAGKSSLFNALA-SGAALVSPVAGTTR 234 Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS----K 311 D LT L L G V++ DTAG + D +E++ + + AD+I+ E + Sbjct: 235 DYLTKPLALAGVPVELVDTAGWLDATDTIEEQAQRLGAEQATRADVIVWCDESGAFGARD 294 Query: 312 KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371 K + + + TKSDL S + E L S G +L+ + + Sbjct: 295 KTHLRATGAELLKVRTKSDLTSEVS-EGQSLACSVIAPGGLDLLLAALVDAATSLTRSAL 353 Query: 372 SIPSHKRHLYHLSQTVRYL-EMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLD 430 + PS R H+ + +L E +L + +++A LR A LG++TG + LLD Sbjct: 354 A-PSQSRCRGHVLACLEHLWEAETLAARGEHPELLALALRGALEPLGEMTGAIYTNDLLD 412 Query: 431 IIFSKFCIGK 440 IFS+FCIGK Sbjct: 413 RIFSRFCIGK 422 >gi|317054820|ref|YP_004103287.1| tRNA modification GTPase TrmE [Ruminococcus albus 7] gi|315447089|gb|ADU20653.1| tRNA modification GTPase TrmE [Ruminococcus albus 7] Length = 455 Score = 146 bits (368), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 136/470 (28%), Positives = 228/470 (48%), Gaps = 53/470 (11%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCE-----FICKKKKPFPRKASLRYFFGLDG-RI 60 T+ A+S IS+IR+SG + F C+ + + + Y DG + Sbjct: 3 TVCAISPPLAEGGISVIRISGENAINCAAEVFKPFTCESVEKM-QGYTCAYGQIHDGDKT 61 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D G+L VF +P S+TGED E HGGI V +L L A GEF++RA N Sbjct: 62 VDDGVLTVFRAPHSYTGEDVCEISCHGGIYVTKKVLR-LCLENGCEPAQAGEFTKRAMLN 120 Query: 121 GKIDLLEAESLADLISSETE---MQRRLSMEG-MSGELSSLYGQWIDKLTHIRSFIEADL 176 GK+ L +AE++ D I+++ E L+ +G + G++ + G + L + +++ Sbjct: 121 GKLSLTQAEAVMDTIAAQGEYALASANLTRQGSLFGQIHEVTGDLVKLLGELAAWV---- 176 Query: 177 DFSEEE--DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234 D+ EE+ V+ + +E + L + + I+ G +I+ G VI G N GKS+ Sbjct: 177 DYPEEDLPAVEETALRESIGKALSVTGKL---IADHDNGMLIKQGIDTVIAGKPNVGKST 233 Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT-- 292 L N L D +IVT++ GTTRDV+ L + ++SDTAGIR+T+D VEK G++ Sbjct: 234 LMNLLLGYDRSIVTEVAGTTRDVIEESAKLGELVFRLSDTAGIRDTEDRVEKIGVEMAEK 293 Query: 293 -------FLEV------ENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY 339 +EV + D I LL+++ + + S + + KSDL S E + Sbjct: 294 RLDECMFVIEVFDTSVRPDEDDIALLEKVKASGKRS-------LIVLNKSDLESAVDEGF 346 Query: 340 DH-------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM 392 IS+ + ++ ++ I + + +I +++R L + L+ Sbjct: 347 FRGYSENIVYISAKNRDDRAQIQAAVEKIFTPENYDANSTIFANERQKQCLDKAHTNLK- 405 Query: 393 ASLNEKDCG--LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 A+L D G LD + + A+ SL ++TG E ++ +FSKFC+GK Sbjct: 406 AALEALDMGETLDAVTVMVDFAADSLLELTGEKATEAVVAEVFSKFCVGK 455 >gi|149176567|ref|ZP_01855180.1| tRNA modification GTPase [Planctomyces maris DSM 8797] gi|148844680|gb|EDL59030.1| tRNA modification GTPase [Planctomyces maris DSM 8797] Length = 457 Score = 145 bits (367), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 141/467 (30%), Positives = 229/467 (49%), Gaps = 48/467 (10%) Query: 6 ETIFAVSTGALPSAISIIRLSGP---SCFQVCEFICKKKKPFPRKASLRY-----FFGLD 57 +TI A+++ A +IR+SG C Q C F K R + RY G D Sbjct: 7 DTIVALASAPGSGAAGLIRISGNEILPCLQDC-FDSDAKWQNSRLPT-RYSGTIKLAGSD 64 Query: 58 GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 R+ G L +P+ SFTG+ AEFH ++ +E LA R+A PGEF+ RA Sbjct: 65 SRL--PGALYFWPTARSFTGQPLAEFHTVSSPPLLESAIENLAAH-GARMARPGEFTLRA 121 Query: 118 FENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLD 177 F G++DL++AE++ +I + + L++ ++G +S+ G L + S +EA LD Sbjct: 122 FLAGRVDLVQAEAVLGVIDAYDHEELNLALSQLAGGVSTRIGAARVDLLELLSELEAGLD 181 Query: 178 FSEEEDVQNFSSKEVLNDILFLKN-------DISSHI-SQGKLGEIIRNGYKIVILGHSN 229 F EED++ + ++N + ++ D S + S G L +V+ G N Sbjct: 182 FV-EEDIEFIDRETLVNRLQKIREFCEQLYLDSSERMESTGSL--------SLVLAGLPN 232 Query: 230 AGKSSLFNAL-AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEG 288 AGKS+L+NAL + A+V+DI GTTRD L L+ G +++ DTAG+ + Sbjct: 233 AGKSTLYNALVGDEQAALVSDIEGTTRDYLVTSLNWSGQPIQLIDTAGLEAGVHEISVSA 292 Query: 289 IKRTFLEVENADLILL---------LKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY 339 + ++ ADL++ L+ I+ + ++++ I + TKSDL + Sbjct: 293 QQFRQQQMAQADLVVWCTAADLRPELRSIDQSQRTQLAESLNVITVLTKSDLSPALNGDA 352 Query: 340 DHLISSFTGE--GLEELINKIKSILSNK---FKKLPFSIPSHKR-HLYHLSQTVRYLEMA 393 ++ E GLE+L + + S LS ++L S S R L +++ E A Sbjct: 353 ACEVALSVAEESGLEDLKHAVLSRLSESRRGSRQLIGSTASRCRDSLRQAGHSLQAAEEA 412 Query: 394 SLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + + G +++A +R A LG+I G V + +LD IFSKFCIGK Sbjct: 413 A--QLQVGEELVAIEIRGALQHLGQIVGQVYTDDILDRIFSKFCIGK 457 >gi|153820111|ref|ZP_01972778.1| probable tRNA modification GTPase TrmE [Vibrio cholerae NCTC 8457] gi|126509342|gb|EAZ71936.1| probable tRNA modification GTPase TrmE [Vibrio cholerae NCTC 8457] Length = 294 Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 101/291 (34%), Positives = 156/291 (53%), Gaps = 20/291 (6%) Query: 168 IRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227 +R ++EA +DF EEE + + +V D+ + +++++ + G I+R G K+VI G Sbjct: 6 LRIYVEAAIDFPEEE-IDFLADGKVSADLQTIIDNLAAVRREANQGAIMREGMKVVIAGR 64 Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKE 287 NAGKSSL NAL+ K+ AIVTDI GTTRDVL + ++G + I DTAG+R+ D VEK Sbjct: 65 PNAGKSSLLNALSGKESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDAVEKI 124 Query: 288 GIKRTFLEVENADLILLL-----KEINSKKEI------SFPKNIDFIFIGTKSD-----L 331 GI+R + E+ AD +L + E ++I P+NI I K+D L Sbjct: 125 GIERAWEEIRQADRVLFMVDGTTTEATDPQDIWPDFVDKLPENIGITVIRNKADQTGEPL 184 Query: 332 YSTYTEEYDHL-ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL 390 + + + +S+ TG+G++ L +K + + + +RHL L + +L Sbjct: 185 GICHVNQPTLIRLSAKTGQGVDALRQHLKECMGFSGNQ-EGGFMARRRHLDALERAAEHL 243 Query: 391 EMASLN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + E +I+AE LR+A L +ITG + LL IFS FCIGK Sbjct: 244 AIGQQQLEGYMAGEILAEELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 294 >gi|208435318|ref|YP_002266984.1| putative thiophene/furanoxidation protein [Helicobacter pylori G27] gi|208433247|gb|ACI28118.1| putative thiophene/furanoxidation protein [Helicobacter pylori G27] Length = 404 Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 127/411 (30%), Positives = 205/411 (49%), Gaps = 27/411 (6%) Query: 50 LRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLAN 109 +R F +G +LDK L+I F +P SFTGED E HG + IL+ + RLA Sbjct: 1 MRDIFS-NGVLLDKALVIYFKAPYSFTGEDVCEIQCHGSPLLAQNILQACLNL-GARLAK 58 Query: 110 PGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIR 169 GEFS++AF N K+DL E E+ LI E E + GEL + + L + Sbjct: 59 AGEFSKKAFLNHKMDLSEIEASVQLILCEDESVLNALARQLKGELKIFIEEARNNLLKLL 118 Query: 170 SFIEADLDFSEEEDVQNF---SSKEVLNDILFLKNDISSHISQGKLGEIIRN-GYKIVIL 225 + E +D+SEE+ +F S+ + I K+ + +Q + RN G+ + I+ Sbjct: 119 ASSEVLIDYSEEDIPSDFLDGVSQNLEKQIASFKDLLDFSNAQKQ-----RNKGHALSIV 173 Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVE 285 G NAGKSSL NA+ ++ A+V+DI GTTRD + ++L+G+ V++ DTAGIRE+ D +E Sbjct: 174 GKPNAGKSSLLNAMLLEERALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRESADKIE 233 Query: 286 KEGIKRTFLEVENADLILLLKEINSKKEISFPKNID--------FIFIGTKSDLYSTYTE 337 + GI+++ +EN D+IL + +++ E ID I + K+DL Sbjct: 234 RLGIEKSLKSLENCDIILGVFDLSKPLEKEDFTIIDALNRAKKPCIVVLNKNDLAPKLEL 293 Query: 338 EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP----SHKRHLYHLSQTVRY---- 389 E LE ++ L + +K+ P +K L L+Q Sbjct: 294 EVLKSYLKIPYALLETNTLNSRACLKDLSQKISEFFPKLDTQNKLLLTSLAQKTALENAI 353 Query: 390 LEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +E+ + L++ + ++ A +L +T + Q+LD +FS+FC+GK Sbjct: 354 IELQNAKNHLETLELFSYHILSAIENLNLLTRPYETSQMLDSMFSEFCLGK 404 >gi|255081831|ref|XP_002508134.1| hypothetical protein MICPUN_60555 [Micromonas sp. RCC299] gi|226523410|gb|ACO69392.1| hypothetical protein MICPUN_60555 [Micromonas sp. RCC299] Length = 662 Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 99/333 (29%), Positives = 166/333 (49%), Gaps = 46/333 (13%) Query: 4 EKETIFAVSTGALPSA--ISIIRLSGPSCFQVCEFI----------CKKKKPFPRKASLR 51 + +TI A++T +P+A ++IIRLSGP + + ++ P + Sbjct: 92 DGDTIVAIATPVVPNAGGVAIIRLSGPRAVEAARAVFRPASRAARAAAREGAPPSSHTAL 151 Query: 52 YFFGLDGR--------------------ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAV 91 Y +D ++D+ L++ P S+T ED E H HGG Sbjct: 152 YGVVVDPTSVPNGSRRVNDEDVDADALDVVDEVLVLPMLRPRSYTAEDVVEIHCHGGSVC 211 Query: 92 VNGILEELAK----------MPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEM 141 V +L L + +RLA PGEF+ RAF NG++DL +AE++ L+++ TE Sbjct: 212 VQRVLSLLTRRDLLDPSGDTAGGVRLARPGEFTLRAFLNGRLDLTQAEAVHSLVAARTER 271 Query: 142 QRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKN 201 ++ + G L+S + + + +EA LDF E+++ S + ++ ++ Sbjct: 272 AADGALAALRGGLASPVRDARARCVDLLAELEARLDF--EDELTPLDSDAIAAEVAAVRA 329 Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261 D++ ++ + G+++ G + I+G NAGKSSL NA ++ + AIVT I GTTRDV+ Sbjct: 330 DVAKVLATARRGKLLDTGVTVAIVGKPNAGKSSLLNAWSRSERAIVTPIAGTTRDVVEAR 389 Query: 262 LDLEGYLVKISDTAGIRETD--DIVEKEGIKRT 292 ++ G V + DTAGIR D VE G+KR+ Sbjct: 390 VECAGLPVTLLDTAGIRRGAGVDEVEAIGVKRS 422 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 33/101 (32%), Positives = 56/101 (55%), Gaps = 3/101 (2%) Query: 343 ISSFTGEGLEELINKIKSIL-SNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKD 399 +S+ TG GLEEL ++ I+ + +++R L Q + LE A + + + Sbjct: 562 VSAVTGAGLEELERELGRIVEGGSVDAEGGAWSANQRQAEALEQALGALERLEAIVVDGN 621 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +D +LR A+++LG +TG E +LD++F+KFCIGK Sbjct: 622 LPVDFWTIDLREAAMALGAVTGEDVSEDVLDVVFTKFCIGK 662 >gi|283782054|ref|YP_003372809.1| small GTP-binding protein [Pirellula staleyi DSM 6068] gi|283440507|gb|ADB18949.1| small GTP-binding protein [Pirellula staleyi DSM 6068] Length = 466 Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 120/392 (30%), Positives = 194/392 (49%), Gaps = 22/392 (5%) Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 L+V+P S+T + + E H G +++ ++ A R A GEF+ RA G++DL Sbjct: 80 LLVWPGRRSYTRQPTVEIHTVGCTPILD-VITSTACAAGARAARRGEFTLRALLAGRLDL 138 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 +AE++ +I + + Q ++ ++G L+S ++L + S +EA LDF++E D+ Sbjct: 139 TQAEAVLGVIEARSPQQLSTALSQLAGGLASPLAALREELLDLLSLVEAGLDFADE-DLD 197 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 SS E+ + I + + + Q + + ++++ G NAGKSSLFNALA A Sbjct: 198 LLSSDELTSRIEAVAAQVIALEDQLASRAVRTSRPRVLLAGRPNAGKSSLFNALAGYHAA 257 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR--TFLEVENADLIL 303 IV D+ GTTRD LT + L + + DTAG+ E + + + + T ADL+L Sbjct: 258 IVADVAGTTRDYLTQTIRLGLLEIDLLDTAGLDEMVPTTKLDALAQQLTISAAAEADLVL 317 Query: 304 LL---KEINSKKEISFPKN----IDFIFIGTKSDLYSTY-----TEEYDHLISSFTGEGL 351 + + +E + P+ + IGTK DL S + D L+SS EGL Sbjct: 318 WCIDARRLGDPRE-AIPEVWKTLAPAVVIGTKCDLLSPAEMAQGRSQVDLLVSSAANEGL 376 Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR--YLEMASLNEKDCGLD-IIAEN 408 +L +I ++ L ++ S H T R E A + G D ++A Sbjct: 377 AQLRERIAQEVA--LDALSPAVASTAARSQHSLATARASLAEAAQIARSAIGADELVAAE 434 Query: 409 LRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LR+A +LG I G + +LD +FSKFCIGK Sbjct: 435 LRIAIDALGDIAGVTYTDDILDRVFSKFCIGK 466 >gi|296121960|ref|YP_003629738.1| small GTP-binding protein [Planctomyces limnophilus DSM 3776] gi|296014300|gb|ADG67539.1| small GTP-binding protein [Planctomyces limnophilus DSM 3776] Length = 461 Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 119/392 (30%), Positives = 194/392 (49%), Gaps = 20/392 (5%) Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 L ++P S+ G+ AE + G ++ L E + R A PGEF+ RAF NGK+DL Sbjct: 73 LTLWPDHRSYCGQPQAEITLAGCQPLLEATLAECFRH-GARGAQPGEFTLRAFLNGKVDL 131 Query: 126 LEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQ 185 ++AE++ +I + E R+++ +SG +S + L ++ + IEA LDF +ED++ Sbjct: 132 IQAEAVLGVIEARHEEDLRVALNQLSGGVSQPLIDLRNDLLNLLADIEAGLDFV-DEDIE 190 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVIL-GHSNAGKSSLFNALAKKDV 244 +V+ + + S I + N K V+L G NAGKS+L N L+ D Sbjct: 191 FVPRSQVIQRLQTAFAQLKS-IEGRSPSRLTSNSRKRVVLAGRPNAGKSTLLNRLSNADA 249 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 A+V+ I GTTRD L + EG + DTAG E+ + + + ++ ++ ++D +L Sbjct: 250 ALVSPIAGTTRDYLLWSIAWEGLSFDLIDTAGWEESLNPIAEASQRQREEQMASSDFLLW 309 Query: 305 -------LKEINSKKE---ISFPKNIDFIFIGTKSDLYST--YTEEYDHLI--SSFTGEG 350 L E +E ++ K I I TK DLY + D L+ S+ G G Sbjct: 310 CSPANLSLAEAAEDQEFFDLAASKTSKAIRITTKFDLYEPEKHYLPKDSLVSLSAVNGTG 369 Query: 351 LEELINKIKSILSNKFKKLPFSIPSHKRHLYH-LSQTVRYLEMASLNEKDCGLD-IIAEN 408 L++L ++ +L++ F + + + L R L+ A + D ++A + Sbjct: 370 LDQLAGLLRKLLTSDHSLSQFWLGTTAARCHEVLGSAFRALDSALQAARSGTADELLAAD 429 Query: 409 LRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 LR +LG +TG E LLD IFS+FCIGK Sbjct: 430 LRQVINALGLMTGATQTEDLLDRIFSRFCIGK 461 >gi|222640528|gb|EEE68660.1| hypothetical protein OsJ_27256 [Oryza sativa Japonica Group] Length = 415 Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 112/365 (30%), Positives = 188/365 (51%), Gaps = 48/365 (13%) Query: 112 EFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSF 171 EF+ RAF NG++DL +AE+++ LIS+++ ++ G+ G S+L + + + Sbjct: 63 EFTVRAFLNGRLDLAQAENVSRLISAKSAAAADSALAGIQGGFSALVKSLRSRCIELLTE 122 Query: 172 IEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAG 231 IEA LDF E+++ +++ I ++ ++ + +++++G ++ I+G N G Sbjct: 123 IEARLDF--EDELPPLDLTMLVSKINGMRQEVQDALDTANYDKLLQSGLQVAIIGRPNVG 180 Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR 291 KSSL NA +K + AIVT+I GTTRDV+ ++ + G + + DTAGIRETDDIVEK G++R Sbjct: 181 KSSLLNAWSKSERAIVTEIAGTTRDVVEANVSIHGIPITLLDTAGIRETDDIVEKIGVER 240 Query: 292 TFLEVENADLILL-LKEIN---------------SKKEISFPKNIDFIFIGTKSDLYSTY 335 + ADLI++ + ++ SKK P + + + K D Sbjct: 241 SEAAALGADLIIMTISAVDGWTEDDTKLIEHVLISKKSSGAP--VPMVLVINKVDCAPFI 298 Query: 336 T-EEYDHLISSF---------TGEGLEELINKIKSILSNKFKKLPFSIPSHKR------- 378 + E+++ F TG+G+ EL I + + +PS R Sbjct: 299 SGEQFEQFHGVFKKHVQTCAVTGKGISELEKAIIEVRGLE------PVPSEGRRWTVNQR 352 Query: 379 ---HLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSK 435 L Q LE +S+NE+ +D +LR A+++L I+G E++L IFSK Sbjct: 353 QFEQLLRTQQAFTRLE-SSINEQ-LPMDFWTIDLREAALALATISGEDISEEVLSSIFSK 410 Query: 436 FCIGK 440 FCIGK Sbjct: 411 FCIGK 415 >gi|291333887|gb|ADD93568.1| tRNA modification GTPase TrmE [uncultured marine bacterium MedDCM-OCT-S04-C293] Length = 341 Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 98/301 (32%), Positives = 165/301 (54%), Gaps = 7/301 (2%) Query: 62 DKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENG 121 +K L+ F P S+TGED AE HG +V ++E+ ++ R A PGEF++RAF N Sbjct: 12 EKCLVSCFEGPSSYTGEDVAEISCHGNPLIVRALIEKCIEL-GARNAKPGEFTQRAFLNS 70 Query: 122 KIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181 KIDL ++E++ DLI++ + + + +SG + ++ L IR +E+ +DFS++ Sbjct: 71 KIDLAQSEAVIDLINASSSAAMVAASKSVSGNFGENVDKILESLRKIRMLVESSIDFSDQ 130 Query: 182 EDVQNFSSKEVL-NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 + +F L D L D I +G I + +++V+ G N GKSS+ N L+ Sbjct: 131 DTNIDFKQINALFKDFKLLLGDFDERIEEGIR---IMSEHRVVVAGPPNVGKSSIMNILS 187 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENA 299 ++ +IVT+I GTTRD + + ++ V I DTAGI ET D +E+ GI ++ +E A Sbjct: 188 GEEASIVTEIKGTTRDPIYKKIQIKDLQVDIYDTAGINDETTDEIERLGIDKSRSLIEGA 247 Query: 300 DLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIK 359 DL+L + + + ++ S KN + + + KSD+ S E ++S+ + + L K Sbjct: 248 DLVLEVVDAEN-RDFSLEKNENILKVFNKSDISSPPKEFGGVIVSALEKKNISALEEKFS 306 Query: 360 S 360 S Sbjct: 307 S 307 >gi|229087972|ref|ZP_04220079.1| tRNA modification GTPase mnmE [Bacillus cereus Rock3-44] gi|228695341|gb|EEL48219.1| tRNA modification GTPase mnmE [Bacillus cereus Rock3-44] Length = 326 Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 98/327 (29%), Positives = 176/327 (53%), Gaps = 21/327 (6%) Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192 DLI ++T+ +++ M G LS+L G+ ++ + +E ++D+ E +DV+ + + Sbjct: 2 DLIRAKTDRAMSVAINQMEGRLSNLIGRLRQEILETLAHVEVNIDYPEYDDVEEMTHNIL 61 Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252 + +++ +I + K G+I+R G I+G N GKSSL N+L ++ AIVTDI G Sbjct: 62 IEKATYVRGEIKKILETSKQGKILREGIATAIIGRPNVGKSSLLNSLVQEKKAIVTDIAG 121 Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312 TTRDV+ +++ G +K+ DTAGIRET+D+VE+ G++R+ + ADL+L++ +N + Sbjct: 122 TTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSKEMMGQADLVLIV--VNYSE 179 Query: 313 EISFP--------KNIDFIFIGTKSDLYSTYTEEY-------DHLISS--FTGEGLEELI 355 ++ + DFI I K+DL E + +I++ +G++EL Sbjct: 180 ALTIEDEELFRAVQGKDFIVIVNKTDLPKQIDMERVTKLAGDNRIITTSLIEEKGVDELE 239 Query: 356 NKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGLDIIAENLRLAS 413 I + + + S+ RH+ L+Q + + + E +D++ +L Sbjct: 240 KAIADLFFEGAIESADMTYVSNARHIGLLTQAEKTIGDAIEAIENGVPIDMVQIDLTRTW 299 Query: 414 VSLGKITGCVDVEQLLDIIFSKFCIGK 440 LG+ITG E L+D +FS+FC+GK Sbjct: 300 EILGEITGDTVHESLIDQLFSQFCLGK 326 >gi|242209081|ref|XP_002470389.1| predicted protein [Postia placenta Mad-698-R] gi|220730559|gb|EED84414.1| predicted protein [Postia placenta Mad-698-R] Length = 647 Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 81/202 (40%), Positives = 116/202 (57%), Gaps = 18/202 (8%) Query: 102 MPNLRL-----------ANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGM 150 MP LRL PGE SR A + ++DL + E L DLI +ETE QRR +++ Sbjct: 450 MPFLRLIDSPPFDAPPRCRPGELSRCASKGRRLDLTQVEGLKDLIYAETESQRRAALKAA 509 Query: 151 SGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQG 210 G D+ +R I DF E ED++ + + L + +H++ Sbjct: 510 GGITR-------DRFEQLREEIIQCTDFEEGEDIEEGTYDLARLRVQDLCRTLEAHLADN 562 Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270 + GEI+R+G ++ I G NAGKSSL N LA+++ AIVT IPGTTRD+L + LD+ G V Sbjct: 563 RRGEILRSGIRLAIFGPPNAGKSSLLNFLAQREAAIVTPIPGTTRDILELSLDIGGLPVL 622 Query: 271 ISDTAGIRETDDIVEKEGIKRT 292 I+DTAGIR+T+D+VE G++R Sbjct: 623 IADTAGIRQTEDVVESIGVERA 644 >gi|224534062|ref|ZP_03674645.1| tRNA modification GTPase TrmE [Borrelia burgdorferi CA-11.2a] gi|224512761|gb|EEF83129.1| tRNA modification GTPase TrmE [Borrelia burgdorferi CA-11.2a] Length = 373 Score = 140 bits (353), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 116/376 (30%), Positives = 196/376 (52%), Gaps = 26/376 (6%) Query: 86 HGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRL 145 HG + + I++ K R+A PGEF+ RAF KIDL +AE++ ++I ++T L Sbjct: 3 HGSVIGIKKIIDLFLK-SGFRMAEPGEFTLRAFLAKKIDLTKAEAIHEIIFAKTNKTYSL 61 Query: 146 SMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISS 205 ++ +SG L + + S + LD+ +V + + IL K ++ Sbjct: 62 AVNKLSGALFVKIDAIKKSILNFLSAVSVYLDY----EVDDHEISIPFDLILSSKAELKK 117 Query: 206 HISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE 265 I+ K+ E I NG +V+ G NAGKSSLFN KKD +IV+ PGTTRD + +L+ Sbjct: 118 LINSYKVYEKIDNGVALVLAGSVNAGKSSLFNLFLKKDRSIVSSYPGTTRDYIEASFELD 177 Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISF----PK 318 G L + DTAG+R+ D+ VE+ GI+++ ++ A L++ + +++S K + F Sbjct: 178 GILFNLFDTAGLRDADNFVERLGIEKSNSLIKEASLVIYVIDVSSNLTKDDFLFIDSNKS 237 Query: 319 NIDFIFIGTKSDL-YSTYTEEYDH----------LISSFTGEGLEELINKIKSILSNKFK 367 N +F+ K DL + TEE+ +IS+ EG++ L +KI++++S + Sbjct: 238 NSKILFVLNKIDLKINKSTEEFVRSKVLNSSNLIMISTKNLEGIDILYDKIRALISYERV 297 Query: 368 KLPFS--IPSHKRHLYHLSQTVRY-LEMASLNEKDCGLDIIAENLRLASVSLGKITGCVD 424 ++ I S R + L + L++ S ++ D++A + LG+ITG V Sbjct: 298 EIGVDDIIISSSRQMQLLEKAYALILDLLSKIDRQVSYDMLAFDAYEIINCLGEITGEVS 357 Query: 425 VEQLLDIIFSKFCIGK 440 E +LD +F FC+GK Sbjct: 358 SEDVLDNMFKNFCLGK 373 >gi|229106078|ref|ZP_04236691.1| tRNA modification GTPase mnmE [Bacillus cereus Rock3-28] gi|228677344|gb|EEL31608.1| tRNA modification GTPase mnmE [Bacillus cereus Rock3-28] Length = 326 Score = 139 bits (351), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 99/325 (30%), Positives = 174/325 (53%), Gaps = 17/325 (5%) Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192 DLI ++T+ +++ M G LS L G+ + + +E ++D+ E +DV+ + + Sbjct: 2 DLIRAKTDRAMNVAINQMEGRLSKLIGRLRQDILETLAHVEVNIDYPEYDDVEEMTHNIL 61 Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252 + ++ +I+ + K G+I+R G I+G N GKSSL N+L ++ AIVTDI G Sbjct: 62 IEKATHVRAEIAKILETSKQGKILREGIATAIIGRPNVGKSSLLNSLVQEKKAIVTDIAG 121 Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL----KEI 308 TTRDV+ +++ G +K+ DTAGIRET+D+VE+ G++R+ + ADL+L++ + + Sbjct: 122 TTRDVIEEYVNVRGVPLKLIDTAGIRETEDVVERIGVERSKEMMSQADLVLVVVNYSEAL 181 Query: 309 NSKKEISFP--KNIDFIFIGTKSDLYSTYTEEY-------DHLISS--FTGEGLEELINK 357 ++ E F + DFI I K+DL E + +I++ +G++EL Sbjct: 182 TNEDEELFRAVQGKDFIVIVNKTDLPQVIDMERVTELAAGNRVITTSLIEEQGIDELEKA 241 Query: 358 IKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYL-EMASLNEKDCGLDIIAENLRLASVS 415 I + + S+ RH+ L+Q + + + E +D++ +L Sbjct: 242 IADLFFEGAIDSADVTYVSNARHIGLLTQAGKTIGDAIEAIENGVPIDMVQIDLTRTWEI 301 Query: 416 LGKITGCVDVEQLLDIIFSKFCIGK 440 LG+ITG E L+D +FS+FC+GK Sbjct: 302 LGEITGDTVHESLIDQLFSQFCLGK 326 >gi|148668863|gb|EDL01031.1| GTP binding protein 3, isoform CRA_c [Mus musculus] Length = 306 Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 96/296 (32%), Positives = 150/296 (50%), Gaps = 28/296 (9%) Query: 170 SFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSN 229 +++EA +DF E+++++ ++ ++ L+ + SH+ + G+ + +G +V+ G N Sbjct: 14 AYVEAYIDFGEDDNLEEGVLEQADREVRALEVALGSHLRDARRGQRLLSGANVVVTGPPN 73 Query: 230 AGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGI 289 AGKSSL N L++K V+IV+ PGTTRDVL +DL G+ V +SDTAG+RE VE+EG+ Sbjct: 74 AGKSSLVNLLSQKPVSIVSPEPGTTRDVLETPVDLAGFPVLLSDTAGLREGVGAVEQEGV 133 Query: 290 KRTFLEVENADLIL---LLKEINSKKEISFPKNIDFIFIGTKSD--------------LY 332 +R +E AD+IL ++ S SF + + D L Sbjct: 134 RRARHRLEQADIILGVLDASDLASSSSCSFLDTVVTPLLAQSQDSGGQRLLLLLNKSDLL 193 Query: 333 STYTEEYD-----H-LISSFTGEGLEELINKIKSILSNKFKKLPFSIP--SHKRHLYHLS 384 S D H L+S TG G++ L+ +K+ L+ P + RH YHL Sbjct: 194 SANAPACDIALPPHLLLSCHTGAGMDSLLQALKTELAAVCGDPSTGPPLLTRVRHQYHLQ 253 Query: 385 QTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + L L L + AE LR A L +TG E++LD+IF FC+GK Sbjct: 254 GCLDALGHYQLATD---LALAAEALRQARRQLNHLTGGGGTEEILDLIFQDFCVGK 306 >gi|87311361|ref|ZP_01093482.1| tRNA modification GTPase [Blastopirellula marina DSM 3645] gi|87285941|gb|EAQ77854.1| tRNA modification GTPase [Blastopirellula marina DSM 3645] Length = 445 Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 132/454 (29%), Positives = 223/454 (49%), Gaps = 32/454 (7%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCE-FICKKKKP--FPRKASLRYFFGLDGRIL 61 ++TI A+ +G+ + +IR+SGP F+ E ++ ++ P F R++++ + Sbjct: 6 EDTIVAIGSGSGGALRGVIRISGPDAFRCVEPWLELRETPATFGRRSAMAAALAK---VA 62 Query: 62 DKGL---LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEEL---AKMPNLRLANPGEFSR 115 D+ L L +P S+T + S E H G +LEEL A R+A PGEF+ Sbjct: 63 DRQLACDLYYWPDDRSYTRQPSIEIHTIGSPP----LLEELVAAACRHGARMAEPGEFTL 118 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF G++DL +AE++ +I +E + + + S+ ++G LSS + +L + + +EA Sbjct: 119 RAFLAGRLDLTQAEAVLGVIDAEGDARLKQSLAQLAGGLSSPLAEARRQLLELLAHLEAG 178 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 LDF EED++ SS + + + + + Q + K+V G N GKSSL Sbjct: 179 LDFV-EEDIEFISSAALCAQLQDAQRCVEQSLMQLSGRDAGEKAIKVVFCGAPNVGKSSL 237 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 FNA+ + AIV D+ GTTRD L + + G V + DTAG E ++ + + Sbjct: 238 FNAVLGESAAIVADLAGTTRDTLQKSIVIGGEPVALIDTAGREEVAAGPQQSAQRLGSDQ 297 Query: 296 VENADL-ILLLKEINSKKEISF------PKNIDFIFIGTKSDLYSTYTEEYDHLISSFTG 348 V ADL I+ + + + P++ + + TK DL + S TG Sbjct: 298 VSRADLRIICFDASRAATDAEWRLWNESPEDRRLLVL-TKGDLATATITAG-ITTSVATG 355 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL--DIIA 406 G I +++ ++ K LP + + + A+LN CGL ++IA Sbjct: 356 AG----IAALRAAIAEKLAALPAADDATASRCRASLEQATNSLAAALNAAQCGLGEELIA 411 Query: 407 ENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +R+A LG++ G + + +LD+IFS+FCIGK Sbjct: 412 VEIRMALSELGRVVGAIATDDILDVIFSRFCIGK 445 >gi|289808227|ref|ZP_06538856.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 185 Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 68/186 (36%), Positives = 111/186 (59%), Gaps = 1/186 (0%) Query: 38 CKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE 97 C K P PR A F +DG LD+G+ + FP P SFTGED E HGG +++ +L+ Sbjct: 1 CWAKLPKPRYADYLPFKDVDGSALDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLK 60 Query: 98 ELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSL 157 + +P +R+A PGEFS RAF N K+DL +AE++ADLI + +E R ++ + G S+ Sbjct: 61 RILTLPGVRIARPGEFSERAFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSAR 120 Query: 158 YGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIR 217 ++ LTH+R ++EA +DF +EE + S ++ + + D+ + ++ + G ++R Sbjct: 121 VNHLVEALTHLRIYVEAAIDFPDEE-IDFLSDGKIEAQLNGVIADLDAVRTEARQGSLLR 179 Query: 218 NGYKIV 223 G K+V Sbjct: 180 EGMKVV 185 >gi|207741910|ref|YP_002258302.1| trna modification gtpase protein [Ralstonia solanacearum IPO1609] gi|206593296|emb|CAQ60223.1| trna modification gtpase protein [Ralstonia solanacearum IPO1609] Length = 292 Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 95/292 (32%), Positives = 151/292 (51%), Gaps = 27/292 (9%) Query: 173 EADLDFSEEEDVQNFS-SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAG 231 +A LDF EEE NF + + + ++ + ++Q + G ++R G +V+ G N G Sbjct: 4 KATLDFPEEE--INFPKAADARGQLADIRARLDGVLAQARQGALLREGLHVVLAGQPNVG 61 Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR 291 KSSL NALA ++AIVT I GTTRD + + +EG + I DTAG+R+T+D VE+ GI+R Sbjct: 62 KSSLLNALAGAELAIVTPIAGTTRDKVQQTIQIEGIPLNIVDTAGLRDTEDEVERIGIER 121 Query: 292 TFLEVENADLILLL---------------KEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336 T+ + AD++L L I+++ P + + + K DL T Sbjct: 122 TWAAIARADVVLHLLDAADYRAHGLSAEDAAIDARIAGHVPAGVPTLRVINKIDLSGAAT 181 Query: 337 ------EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL 390 + + +S+ G G+E L + I + + + +RHL L +L Sbjct: 182 PARVDAQPPEVWLSARDGSGIELLRAVLLEIAGWQGGGEGLYL-ARERHLSALRTAKDHL 240 Query: 391 EMAS--LNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +A+ +++ LD+ AE LRLA +L ITG + LL +IFS+FCIGK Sbjct: 241 AIAADHADQRAQSLDLFAEELRLAQEALNSITGAFSSDDLLGVIFSRFCIGK 292 >gi|213422211|ref|ZP_03355277.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 216 Score = 136 bits (343), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 71/182 (39%), Positives = 109/182 (59%), Gaps = 2/182 (1%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+H +TI A +T + I+R+SG V + + K P PR A F +DG Sbjct: 1 MSH-NDTIVAQATPPGRGGVGILRISGLKARDVAQEVLGKL-PKPRYADYLPFKDVDGSA 58 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG +++ +L+ + +P +R+A PGEFS RAF N Sbjct: 59 LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DL +AE++ADLI + +E R ++ + G S+ ++ LTH+R ++EA +DF + Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPD 178 Query: 181 EE 182 EE Sbjct: 179 EE 180 >gi|21326644|gb|AAL30084.1| GTP-binding protein [Xanthomonas campestris pv. campestris] Length = 243 Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 83/246 (33%), Positives = 126/246 (51%), Gaps = 3/246 (1%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 MN TI A++T A I I+RLSGP Q+ + R A F G + Sbjct: 1 MNASPSTIVAIATAAGTGGIGIVRLSGPQSVQIAAALGIAGLQ-SRHARYARFRDAQGEV 59 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +D G+ + FP+P SFTGE+ E HG ++ ++ + R A GEFS RAF N Sbjct: 60 IDDGIAVWFPAPHSFTGEEVVELQGHGSPVLLRQLVARCIAL-GARQARAGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 GK+DL +AE++ADLI++ R + + G S + LT +R +EA +DF++ Sbjct: 119 GKLDLAQAEAIADLIAASDLRAARAARRSLDGVFSRRVDAVSESLTRLRIHVEAAIDFAD 178 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E + +V ++ + ++ + + G +R+G V++G NAGKSSL NALA Sbjct: 179 EP-LDTLGGAQVREELTRTRALLAQLLRDAERGRKLRDGLHAVLIGPPNAGKSSLLNALA 237 Query: 241 KKDVAI 246 D AI Sbjct: 238 GSDRAI 243 >gi|169596815|ref|XP_001791831.1| hypothetical protein SNOG_01177 [Phaeosphaeria nodorum SN15] gi|160707379|gb|EAT90826.2| hypothetical protein SNOG_01177 [Phaeosphaeria nodorum SN15] Length = 385 Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 72/201 (35%), Positives = 116/201 (57%), Gaps = 10/201 (4%) Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 +DL + ESL + +S+ TE QR+LS+ G + L+ Y W L R +EA +DFSE++ Sbjct: 1 MDLPQIESLGETLSASTEQQRKLSVRGTTSSLAVRYEHWRQLLLAARGELEALIDFSEDQ 60 Query: 183 DVQNFSS---KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 + V + L+ + +H++ GE++RNG + +LG NAGKSSL N + Sbjct: 61 HFDESPAILCASVAEQVRALRTQMEAHVANAVRGELLRNGISVALLGAPNAGKSSLLNRI 120 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-------ETDDIVEKEGIKRT 292 +D AIV+ GTTRDV+ + +DL G+LVKI D AG+R E VE+EGIKR Sbjct: 121 VGRDAAIVSQEAGTTRDVVEVGVDLGGWLVKIGDMAGLRRAGLVGAEAVGAVEQEGIKRA 180 Query: 293 FLEVENADLILLLKEINSKKE 313 +D+++++++ ++ + Sbjct: 181 KQRALESDVLIVVQDATAETD 201 >gi|281419980|ref|ZP_06250979.1| thiophene and furan oxidation protein ThdF [Prevotella copri DSM 18205] gi|281405780|gb|EFB36460.1| thiophene and furan oxidation protein ThdF [Prevotella copri DSM 18205] Length = 341 Score = 129 bits (325), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 108/347 (31%), Positives = 175/347 (50%), Gaps = 35/347 (10%) Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE 182 +DL +AE++ADLI+S + ++++ + G S+ +KL + S +E +LDFS+ E Sbjct: 1 MDLSQAEAVADLIASTNKATHKMALSQLKGHFSNELSLLREKLLKMTSLLELELDFSDHE 60 Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 +++ E+ + + I++ + G ++ G + I+G +N GKS+L N L + Sbjct: 61 ELEFADRSELQALAEEINHKITTLAHSFETGNALKQGVAVAIVGKTNVGKSTLLNRLLHE 120 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 + AIV+DI GTTRDV+ ++G + DTAGIR+TDD+VE GI+RTF ++E A ++ Sbjct: 121 EKAIVSDIHGTTRDVIEDTTLIDGITFRFIDTAGIRKTDDVVENIGIERTFQKMEEAKIV 180 Query: 303 L-LLKEINSKKEISFPK----NIDFIFIGTKSD-------LYSTYTE---------EYDH 341 + LL E S EI K + + K D + +T E Sbjct: 181 IWLLDEQPSASEIEEMKLKNQGKKLLVVFNKMDKLENDKLAFDKFTHSCGSDSSESEAPL 240 Query: 342 LISSFTGEG---LEELINKIKSILSNKFKKLPFSIPSHKRHLYH----LSQTVRYLEMAS 394 IS+ TGE LE+ + K I + + H L LS+ + +EM Sbjct: 241 FISARTGENVSSLEQALVKAADIPEITENDVIITSARHYEALLRAHDSLSRVLESMEMG- 299 Query: 395 LNEKDCGLDIIAENLRLASVSLGKITGC-VDVEQLLDIIFSKFCIGK 440 DIIAE+L++ LG+ITG + ++ L+ IF FCIGK Sbjct: 300 -----MSGDIIAEDLKMVLEELGEITGGQISSQETLNNIFKHFCIGK 341 >gi|262189625|ref|ZP_06048013.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae CT 5369-93] gi|262034492|gb|EEY52844.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Vibrio cholerae CT 5369-93] Length = 242 Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 88/243 (36%), Positives = 128/243 (52%), Gaps = 19/243 (7%) Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 +R G K+VI G NAGKSSL N L+ K+ AIVTDI GTTRDVL + ++G + I DTA Sbjct: 1 MREGMKVVIAGRPNAGKSSLLNVLSGKESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTA 60 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLL-----KEINSKKEI------SFPKNIDFIF 324 G+R+ D VEK GI+R + E+ AD +L + E ++I P+NI Sbjct: 61 GLRDASDAVEKIGIERAWEEIRQADRVLFMVDGTTTEATDPQDIWPDFVDKLPENIGITV 120 Query: 325 IGTKSD-----LYSTYTEEYDHL-ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378 I K+D L + + + +S+ TG+G++ L +K + + + +R Sbjct: 121 IRNKADQTGEPLGICHVNQPTLIRLSAKTGQGVDALRQHLKECMGFSGNQ-EGGFMARRR 179 Query: 379 HLYHLSQTVRYLEMASLN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFC 437 HL L + +L + E +I+AE LR+A L +ITG + LL IFS FC Sbjct: 180 HLDALERAAEHLAIGQQQLEGYMAGEILAEELRIAQQHLNEITGEFSSDDLLGRIFSSFC 239 Query: 438 IGK 440 IGK Sbjct: 240 IGK 242 >gi|291520339|emb|CBK75560.1| small GTP-binding protein domain [Butyrivibrio fibrisolvens 16/4] Length = 273 Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 92/247 (37%), Positives = 139/247 (56%), Gaps = 29/247 (11%) Query: 133 DLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEV 192 DLISS +E+ + S++ +SG L+ + DK+ + ++IE+ LD E D+ ++ + Sbjct: 2 DLISSNSELAMKNSIKQLSGSLNKIIVDLRDKILYETAYIESALDDPEHYDLTDYPVE-- 59 Query: 193 LNDILFLKNDISSHISQG-------KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 LKN +S IS+ G I++ G +ILG NAGKSSL N L++++ A Sbjct: 60 ------LKNKVSDMISRVDDLIDSFNSGHILKEGINTLILGKPNAGKSSLLNTLSRRERA 113 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 IVTDIPGTTRD L + + G + I DTAGIRETDDIVEK G+ + +++ADLIL + Sbjct: 114 IVTDIPGTTRDTLEEQITINGVSLNIIDTAGIRETDDIVEKIGVDKALDSIDDADLILFV 173 Query: 306 ----KEINSKKEISFPKNID--FIFIGTKSDLYSTYTEE-----YDHLISSFTG---EGL 351 + ++ K +D I + KSDL S +EE Y+ + SF+ +GL Sbjct: 174 IDSSRPLDENDHFIIDKIMDKKVIILLNKSDLVSKISEEEIYKKYNKPVISFSSVSLDGL 233 Query: 352 EELINKI 358 + L +KI Sbjct: 234 KALESKI 240 >gi|307069505|ref|YP_003877982.1| tRNA modification GTPase mnmE (trmE) [Candidatus Zinderia insecticola CARI] gi|306482765|gb|ADM89636.1| tRNA modification GTPase mnmE (trmE) [Candidatus Zinderia insecticola CARI] Length = 455 Score = 126 bits (316), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 112/355 (31%), Positives = 186/355 (52%), Gaps = 18/355 (5%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK-KPFPRKASLRYFFGLDGR 59 M + K +I A+ST I IIR+SG F + E +C KK K + S +F Sbjct: 1 MKYFKNSIIALSTPNGIGGIGIIRISGNKIFNILEKLCNKKVKNLKPRHSYYTYFKNKEE 60 Query: 60 ILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEE---LAKMPNLRLANPGEFSRR 116 ILD G+LI + SP S+TGE+ E H ++N I+ L L++A GEF++R Sbjct: 61 ILDYGILIYYNSPFSYTGENIIEIQCHSNPIIINKIINTCLFLGSNSKLKIAKRGEFTKR 120 Query: 117 AFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADL 176 AF N KI+L++ +S+ DLI+S + ++ + ++K+ +R IE+++ Sbjct: 121 AFLNKKINLIQVKSIIDLINSSNYLSNKIFLNFYCNNFKKKIKYILNKIIKLRIIIESNI 180 Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 F + N + K++ N + +K I + + N I+I+G +N GKSSL Sbjct: 181 IFLNNK--LNINIKKIYNYLYIIKKSIKKLLFKINNNNNNNNL-NIIIIGRTNMGKSSLM 237 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RETDDIVEKEGIKRTFLE 295 N L+K V+IVT I GTT D + + + L+ + DTAGI ++ + +E+ IK+++ E Sbjct: 238 NILSKSKVSIVTSISGTTIDKIKNSIFFKNNLINLIDTAGIKKKIYNKIERISIKKSWKE 297 Query: 296 VENADLILLLKEINS---KKEI----SFPKNIDFIFIGTKSDL--YSTYTEEYDH 341 ++ +++IL L E KK+ PK IFIG K DL Y + +++++ Sbjct: 298 IKKSNIILYLFESYKGLLKKDYYIINKLPKK-KIIFIGNKIDLIKYKPFIKKFNN 351 >gi|255521612|ref|ZP_05388849.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL J1-175] Length = 301 Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 88/288 (30%), Positives = 156/288 (54%), Gaps = 21/288 (7%) Query: 172 IEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAG 231 +E ++D+ E +DV+ + + +L ++ + + G+I+R G I+G N G Sbjct: 16 VEVNIDYPEYDDVEEMTQRMLLEKTELVRASVEQLLQTASQGKILREGLATAIIGRPNVG 75 Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR 291 KSSL N L +++ AIVTDI GTTRD++ +++ G +++ DTAGIRET+DIVEK G++R Sbjct: 76 KSSLLNQLIQEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETEDIVEKIGVER 135 Query: 292 TFLEVENADLILLLKEINSKKEISFPKNI--------DFIFIGTKSDLYS----TYTEEY 339 + + +AD ILL+ +N +E++ +++ + K+DL + E Sbjct: 136 SRKALADADFILLV--LNQNEELTVEDEALFEAAAGHNYVVVLNKTDLETKLDINRVREL 193 Query: 340 ---DHLISS--FTGEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA 393 + ++S+ EGLE L IK++ + + S+ RH+ L Q + L Sbjct: 194 AGENPIVSTSLVNDEGLEALEEAIKTLFFAGDIDAGDATYVSNVRHIALLHQALEALNGV 253 Query: 394 SLN-EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + + +DI+ ++ A LG+ITG ++LLD +F++FC+GK Sbjct: 254 TTGIQLGMPVDIVQIDMTRAWDLLGEITGDSVQDELLDQLFNQFCLGK 301 >gi|237756915|ref|ZP_04585387.1| probable tRNA modification GTPase TrmE [Sulfurihydrogenibium yellowstonense SS-5] gi|237690916|gb|EEP60052.1| probable tRNA modification GTPase TrmE [Sulfurihydrogenibium yellowstonense SS-5] Length = 157 Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 69/152 (45%), Positives = 98/152 (64%), Gaps = 2/152 (1%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICK-KKKPFPRKASLRYFFGLDGRILDK 63 K+TI A +T +PSAISI+R+SG ++ + I +K PRK F G I+D+ Sbjct: 3 KDTIVANATPLIPSAISIVRISGDKALEIGKKIFSLPEKITPRKVYFGKIFNHKGEIIDE 62 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 GL + F P+SFTGED E + HG + VV ILE M RLA PGEF+ RAF NGKI Sbjct: 63 GLFVYFQKPKSFTGEDLVEIYPHGSVPVVKSILEACF-MHGARLARPGEFTERAFLNGKI 121 Query: 124 DLLEAESLADLISSETEMQRRLSMEGMSGELS 155 DLL+AE++ADLI++++E ++++ + G+LS Sbjct: 122 DLLQAEAIADLINAKSEKAAKIAVSILEGKLS 153 >gi|23009194|ref|ZP_00050334.1| COG0486: Predicted GTPase [Magnetospirillum magnetotacticum MS-1] Length = 141 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 64/139 (46%), Positives = 87/139 (62%), Gaps = 1/139 (0%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGL 65 ETI+A+++ A S +++ RLSG + + P PRKA G ++D GL Sbjct: 3 ETIYALASAAGRSGVAVWRLSGEGSAAALTALTGQLLPEPRKAVRARLRDGIGEVIDDGL 62 Query: 66 LIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDL 125 ++ FP+P SFTGED AE H+HGG AV + L ++ LR A PGEFSRRAF NGK+DL Sbjct: 63 VLWFPAPHSFTGEDVAELHLHGGRAVAAALTARLGEL-GLRPAEPGEFSRRAFLNGKLDL 121 Query: 126 LEAESLADLISSETEMQRR 144 AE++ADL+ +ET QRR Sbjct: 122 TRAEAIADLVDAETSAQRR 140 >gi|302421188|ref|XP_003008424.1| tRNA modification GTPase GTPBP3 [Verticillium albo-atrum VaMs.102] gi|261351570|gb|EEY13998.1| tRNA modification GTPase GTPBP3 [Verticillium albo-atrum VaMs.102] Length = 421 Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 124/471 (26%), Positives = 206/471 (43%), Gaps = 100/471 (21%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFFGLDG----R 59 ++TI+A+ST + I++IR+SGP+C + +C + P PR+A++R + Sbjct: 11 EDTIYALSTAPGRAGIAVIRISGPACLDIYRQLCPSRALPPPRQATVRTLYDPSAPPTAN 70 Query: 60 ILDKGLLIV-FPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 +LD LI+ F P + TG+D E HVHGG A V +L A +P R A+ R Sbjct: 71 VLDPSALILYFAGPRTVTGDDVLELHVHGGQATVKAVL---AAIP--RCASASVAVVRYA 125 Query: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF 178 E G E RR +F+ LD Sbjct: 126 EPG------------------EFTRR-------------------------AFLNDRLDL 142 Query: 179 SEEEDVQNFSSKEVLNDILFLKNDISSHISQG---KLGEII-----RNGYKIVILGHSNA 230 ++ E L D L + QG + G R+G +I +LG N Sbjct: 143 TQVES---------LGDTLAADTEQQRWRRQGLIWRPGRTYEDGARRSGIRIALLGPPNV 193 Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI------- 283 GKSSL N + ++ +IV+ GTTRD++ LD+ G+L +DTAG R + Sbjct: 194 GKSSLMNLVIGREASIVSGEAGTTRDIVEASLDIRGFLCLFADTAGFRGEASLESGGSVG 253 Query: 284 -VEKEGIKRTFLEVENADLILLLKEINSKKE---ISFPKNIDFIFIGTKSDLYSTYTEEY 339 VE+EGI+R + ++ ++++L + + I + + ++ + S + Sbjct: 254 AVEREGIRRAKQKALDSHIVVVLAAVEPTPDGHAIVYDAETVELAAQAQAAISSEAQDAT 313 Query: 340 DHLISSFTGE-GLEELINKIKSILSNKFKKLP------FSIPSHKRHLYHLSQTVRYLE- 391 S T G++ I+ + + + LP + + +R L L Q +L+ Sbjct: 314 SRGTHSTTSNGGVDTFIDTLAGLFGD-MTSLPVEMQDMLGVTARQRQL--LDQCGAWLDE 370 Query: 392 -MA---SLNEKDCGLDIIAENLRLASVSLGKITG---CVDVEQLLDIIFSK 435 MA + +++D + + AE+LR A+ L KITG DVE++L +IF K Sbjct: 371 YMAIAEAGDQQDPDVVLAAEHLRYAAECLAKITGRGEGGDVEEVLGVIFEK 421 >gi|301168598|emb|CBW28188.1| putative tRNA modification GTPase [Bacteriovorax marinus SJ] Length = 514 Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 96/298 (32%), Positives = 149/298 (50%), Gaps = 15/298 (5%) Query: 3 HEKETIFAVSTGALP-SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI- 60 ++ I A STG SAI +IR+SG S + + K + + +DG I Sbjct: 5 YDDRPIIACSTGLQSNSAIGLIRISGFSDLSIFQDFFKIDLANVKARYSHFTSIIDGDIT 64 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+ +L + +P S+ GE+ E VHG + I+ +R A GEFS RA +N Sbjct: 65 LDEIVLTFYSAPNSYNGENILELGVHGNQINIQRIISLFINSKLVRAAKEGEFSYRALKN 124 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+ L + E L L+++ + ++ +SG+L Y D ++S +E +DFSE Sbjct: 125 KKLTLSQVEGLDLLLNANSSFMLDQGLQVLSGDLHKQYLSLHDSFLKLKSSVEISIDFSE 184 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHIS------QGKLGEIIRNGYKIVILGHSNAGKSS 234 DV +L + L + SS ++ Q ++ +V G +NAGKS+ Sbjct: 185 --DVGEEQCAILLKESLL---EFSSRVTSLWRRVQSDRSDLANPSVSLV--GQTNAGKST 237 Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292 LFN L D +IV+D GTTRD ++ L + G ++ DTAG+RET+D +EK GI R Sbjct: 238 LFNYLLANDRSIVSDQAGTTRDYVSEYLTISGNTYRLVDTAGLRETEDNIEKIGIDRA 295 Score = 40.4 bits (93), Expect = 0.55, Method: Compositional matrix adjust. Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 6/91 (6%) Query: 354 LINKIKSILSNKFKKL----PFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENL 409 LI I+ ++S+KF L P I H+ + ++ +++ E SL E + II+ L Sbjct: 426 LITYIEGLISHKFNDLCSDNPLLIGRHRECINNIYLSLQ--EFQSLTENVEDIAIISSEL 483 Query: 410 RLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + + ++ G V + +L+ IF+ FCIGK Sbjct: 484 NILEAKVSELLGIVSPDDVLNNIFTNFCIGK 514 >gi|312601166|gb|ADQ90421.1| tRNA modification GTPase mnmE [Mycoplasma hyopneumoniae 168] Length = 255 Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 88/233 (37%), Positives = 132/233 (56%), Gaps = 9/233 (3%) Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274 +I G K ++G N+GKSSL N L ++ AI+++IPGTTRDV+ + L+G L K+ DT Sbjct: 25 LIYQGIKTCLVGAPNSGKSSLLNILINENKAIISEIPGTTRDVVEGNFVLDGLLFKLFDT 84 Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK-------KEISFPKNIDFIFIGT 327 AGIR+T + +E+ GI++++ ++ ADLIL + + + K K + P I ++ I Sbjct: 85 AGIRKTTEKIEQIGIEKSYESIKKADLILHIIDASEKNRQNLDLKAKARPDQI-YLKIYN 143 Query: 328 KSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV 387 KSDL E D ++ S + +E L+ KIKSI + K F S + L + + Sbjct: 144 KSDLLENQEEFKDEILISAKYQKIENLLEKIKSIFAFLGKNKEFVANSFQISQIELGK-L 202 Query: 388 RYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L+ + E G +I +LR+A L I G VD E LLD IFSKFC+GK Sbjct: 203 AILDAKTSLESGFGPEIAIVDLRIAWKELKTIFGRVDDENLLDSIFSKFCLGK 255 >gi|269468660|gb|EEZ80300.1| GTPase [uncultured SUP05 cluster bacterium] Length = 229 Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 88/233 (37%), Positives = 129/233 (55%), Gaps = 18/233 (7%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 +VI G NAGKSSL NAL ++ AIVTDI GTTRDVL + + G + I DTAG+ ++ Sbjct: 1 MVIAGKPNAGKSSLLNALTQRSSAIVTDIAGTTRDVLKETIHVNGMPLNIIDTAGLHVSE 60 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE-----ISFPKNIDFIFIGTKSDLYSTYT 336 D +E+EGIKR E+E AD++L++ + K+ + K+ + I K DL S T Sbjct: 61 DKIEQEGIKRAHGEIERADVVLMVFDAQDKEPDLSILPAVVKDKPLLLIKNKVDLTSEST 120 Query: 337 ------EEYDHLISSFTGEGLEELINKIKSI--LSNKFKKLPFSIPSHKRHLYHLSQTVR 388 L+ + +GL+ L ++ I LS+ + + + KRH+ L ++ Sbjct: 121 GMSKVNGRTQILLCAKRADGLDLLRQELSDIAGLSDTGEGVLL---ARKRHIVALESALK 177 Query: 389 YLEMASLNEKDCGL-DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 + A L + D G +++AE+LR A SLG ITG + LL IFS FCIGK Sbjct: 178 SIHSA-LEQLDNGASELVAEDLRQAGQSLGSITGEFSSDDLLGEIFSSFCIGK 229 >gi|270690959|ref|ZP_06222897.1| conserved hypothetical protein [Haemophilus influenzae HK1212] gi|270316102|gb|EFA28108.1| conserved hypothetical protein [Haemophilus influenzae HK1212] Length = 155 Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 66/151 (43%), Positives = 93/151 (61%), Gaps = 1/151 (0%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKG 64 KETI A +T I I+R+SGP +V + I K P PR A F DG ILD+G Sbjct: 2 KETIVAQATAPGRGGIGILRVSGPLATKVAQAILGKC-PKPRMADYLPFKDADGTILDQG 60 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKID 124 + + F SP SFTGED E HGG V++ +L+ + ++ +RLA PGEFS +AF N K+D Sbjct: 61 IALYFKSPNSFTGEDVLELQGHGGQVVLDLLLKRILQIDGIRLARPGEFSEQAFLNDKLD 120 Query: 125 LLEAESLADLISSETEMQRRLSMEGMSGELS 155 L +AE++ADLI + +E R +++ + GE S Sbjct: 121 LAQAEAIADLIDATSEQAVRSALKSLQGEFS 151 >gi|218281199|ref|ZP_03487723.1| hypothetical protein EUBIFOR_00286 [Eubacterium biforme DSM 3989] gi|218217587|gb|EEC91125.1| hypothetical protein EUBIFOR_00286 [Eubacterium biforme DSM 3989] Length = 283 Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 93/290 (32%), Positives = 162/290 (55%), Gaps = 19/290 (6%) Query: 162 IDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKND----ISSHISQGKLGEIIR 217 ID L I + IE ++D+ E EDV+ ++ ND+L ND I +S+ + G++++ Sbjct: 2 IDDLMDIIAQIEVNIDYPEYEDVEQLTT----NDLLPKTNDWLEKIDHILSRVQTGQMLK 57 Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 G +I+G N GKSSL NAL ++D AIVTDI GTTRD++ + + + + DTAGI Sbjct: 58 KGIDTIIVGKPNVGKSSLLNALLEEDKAIVTDIAGTTRDLVEGQIHIGSVQLNLIDTAGI 117 Query: 278 RETDDIVEKEGIKRTFLEVENADLILLL----KEIN--SKKEISFPKNIDFIFIGTKSDL 331 RE++D +E+ GI+++ ++++A L+LL+ KE++ K+ + K+ + I K D Sbjct: 118 RESNDKIEQIGIEKSQEKLKDAKLVLLVFDGSKELDEEDKQLLELTKDKMRLIIYNKLDK 177 Query: 332 YSTYTEEYDHLISSFTGEGLEELINKIKSILSNK-FKKLPFSIPSHKRHLYHLSQTVRYL 390 D + S + + ++ LI+ ++++ N K+ P + L +L++ Sbjct: 178 AEANK---DGIWISASNKEIQPLIDALENLYQNDLLKEDPLLSNERQIGLLNLAKEDMLR 234 Query: 391 EMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++N + D+I +++ A L +I G V E LLD +FSKFC+GK Sbjct: 235 AKEAMN-RMVEPDLIEIDIQAAHDHLKEILGEVHREDLLDTLFSKFCLGK 283 >gi|296005027|ref|XP_002808852.1| GTPase, putative [Plasmodium falciparum 3D7] gi|225632248|emb|CAX64129.1| GTPase, putative [Plasmodium falciparum 3D7] Length = 830 Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 116/443 (26%), Positives = 194/443 (43%), Gaps = 122/443 (27%) Query: 105 LRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDK 164 +R + GEF+RRAFEN K+ LL+ E L +L+ + ++Q+++++ M+G +Y + + Sbjct: 403 IRESYKGEFTRRAFENNKMSLLQIEGLKELLFCKQKVQKQIALNYMNGYAKDIYLKLKEL 462 Query: 165 LTHIRSFIEADLDFSEE--------EDVQNF---SSKEVLNDILFL--KNDISSHISQGK 211 L + + E +DF EE E++QN +E +N I ++ KN++ Sbjct: 463 LKELLVYTELKIDFEEEHITSPKEKEEIQNMVLRKIREAINHINYILKKNNV-------- 514 Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 E I N + I++ G+ N+GKS+L N + D++IVT+I G+T D++ ++ + + Sbjct: 515 --EDISNSFDILLFGNVNSGKSTLMNNICNNDISIVTNIKGSTLDIIQKNIQIFNNSYNL 572 Query: 272 SDTAGIRETDDI------------------------VEKEGIKRT--FLEVENADLILLL 305 D+AG+ +++ I +E GIK+T FL+ +LL Sbjct: 573 CDSAGVIKSEKIKSLNEKNYILYEKKKKKKKNIHKTLESMGIKKTLSFLKNNCISAFVLL 632 Query: 306 KEINSKKEI---------SFPKNID---------------------FIFIGTKSDLYST- 334 N KKE+ +F I+ FIF K DL ST Sbjct: 633 NIKNYKKELINIIKILNHNFKGKINQENNKGELNKNKMTNKIKIPYFIFCLNKCDLVSTC 692 Query: 335 -----------------------YTEEYDHLISSFTGEGL--------EELINKIKSILS 363 + ISS G + E++I K K + Sbjct: 693 KFSKIKRNVKKCLLANLSTHILKRCSKKIFFISSKNGYNIDTLLKYFNEKMIKKRKLLFD 752 Query: 364 NKFKK------LPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLG 417 K+ LPF +RH +L + + +L N + DII+E ++LA SL Sbjct: 753 KKYSNGNNIMFLPF-----ERHKLYLKKAINHLLFIQKNIHNLTFDIISEEIKLAVNSLN 807 Query: 418 KITGCVDVEQLLDIIFSKFCIGK 440 +I G + EQ+L+ I FCIGK Sbjct: 808 RIIGTIKNEQILNKILDSFCIGK 830 Score = 40.8 bits (94), Expect = 0.47, Method: Compositional matrix adjust. Identities = 19/39 (48%), Positives = 28/39 (71%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK 42 +KETI+A+S+G + SAIS+IR+SGP + E + K K Sbjct: 160 DKETIYALSSGNVQSAISVIRISGPLSKMILEILLHKGK 198 Score = 37.7 bits (86), Expect = 3.5, Method: Compositional matrix adjust. Identities = 17/60 (28%), Positives = 30/60 (50%) Query: 46 RKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNL 105 RK + + + I+D + F P+S+TGE+ E + HG + +V I+ + M L Sbjct: 278 RKLYMGKLYDKNNDIIDIVMYSYFKEPKSYTGEELVEIYCHGNMLIVKEIMSAINNMNEL 337 >gi|324512672|gb|ADY45241.1| tRNA modification GTPase mnmE [Ascaris suum] Length = 308 Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 93/302 (30%), Positives = 149/302 (49%), Gaps = 35/302 (11%) Query: 163 DKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKI 222 + L + +EA +DF++ DV F L+ + + +++ + + G +I +G ++ Sbjct: 18 ESLVQLACSLEAGIDFAD--DVP-FDWDSFLSHVRDVTSELKMIEQRAQKGCLIIDGIRV 74 Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282 V+LG +N GKSSL N +A++DVAIV+++ GTTRD L ++L V +DTAGIR D Sbjct: 75 VMLGQTNVGKSSLLNCIAERDVAIVSEVEGTTRDALEARIELASVPVIFTDTAGIRSAHD 134 Query: 283 IVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNID-------------FIFIGTKS 329 +E E I RT A +LL +++ K + +D + + K Sbjct: 135 FLEAESISRTIARAAEAH--VLLPVVDASKCVDIAAEVDVLLRQCHCEDASRVVVVCNKI 192 Query: 330 DLYSTYTEEYDHLISSFTGEGL-EELINK--IKSILSNKFKKLPFSIP--------SHKR 378 DL + H++SS + + IN+ I +IL +++ P S R Sbjct: 193 DLIPAHMH---HVVSSLPWKVVFTSCINRTGITNILEAVKEQIAALCPDEGDDALLSRYR 249 Query: 379 HLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCI 438 LS V LE + D L AE +R AS +G+I+G + E++LD IFS FCI Sbjct: 250 QRILLSDAVSLLEQVQ-STSDAAL--AAEYVREASALIGEISGAIVNEEILDRIFSSFCI 306 Query: 439 GK 440 GK Sbjct: 307 GK 308 >gi|255023683|ref|ZP_05295669.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL J1-208] Length = 273 Score = 113 bits (283), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 83/275 (30%), Positives = 146/275 (53%), Gaps = 21/275 (7%) Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 + + + +L ++ + + G+I+R G I+G N GKSSL N L +++ Sbjct: 1 EEMTQRMLLEKTELVRASVEQLLRTASQGKILREGLATAIIGRPNVGKSSLLNQLIQEEK 60 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 AIVTDI GTTRD++ +++ G +++ DTAGIRET+DIVEK G++R+ + +AD ILL Sbjct: 61 AIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETEDIVEKIGVERSRKALADADFILL 120 Query: 305 LKEINSKKEISFPKNI--------DFIFIGTKSDLYS----TYTEEY---DHLISS--FT 347 + +N +E++ +++ + K+DL + E + ++S+ Sbjct: 121 V--LNQNEELTVEDEALFEAAAGHNYVVVLNKTDLETRLDINRVRELAGENPIVSTSLVN 178 Query: 348 GEGLEELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCGLDII 405 EGLE L IK++ + + S+ RH+ L Q + L + + +DI+ Sbjct: 179 DEGLEALEEAIKALFFAGGIDAGDATYVSNVRHIALLHQALEALNGVTTGIQLGMPVDIV 238 Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++ A LG+ITG ++LLD +F++FC+GK Sbjct: 239 QIDMTRAWDLLGEITGDSVQDELLDQLFNQFCLGK 273 >gi|94992362|ref|YP_600461.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase [Streptococcus pyogenes MGAS2096] gi|94545870|gb|ABF35917.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase [Streptococcus pyogenes MGAS2096] Length = 261 Score = 113 bits (282), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 81/248 (32%), Positives = 139/248 (56%), Gaps = 21/248 (8%) Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269 K G+I+R G I+G N GKSSL N L ++D AIVTDI GTTRDV+ ++++G + Sbjct: 18 AKRGKILREGLSTAIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPL 77 Query: 270 KISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFI 323 K+ DTAGIRETDD+VE+ G++R+ ++ ADL+LL+ + K ++ ++ + I Sbjct: 78 KLVDTAGIRETDDLVEQIGVERSKKALQEADLVLLVLNASEKLTDQDRALLNLSQDSNRI 137 Query: 324 FIGTKSDLYSTYTEEYDHL------ISSFTGEGLEELINKIKSILSNK--FKKLPFSIPS 375 + K+DL E + L IS T + + + ++I + + + + S Sbjct: 138 ILLNKTDLEQKI--ELEQLPADLIPISVLTNQNINLIEDRINQLFFDNAGLVEQDATYLS 195 Query: 376 HKRHLYHLSQTVRYLEMASLNEK---DCGLDIIAENLRLASVSLGKITGCVDVEQLLDII 432 + RH+ + + V+ LE ++N+ +D++ +L LG+ITG ++L+ + Sbjct: 196 NARHISLIEKAVQSLE--AVNDGLALGMPVDLLQVDLTRTWEILGEITGDAAPDELITQL 253 Query: 433 FSKFCIGK 440 FS+FC+GK Sbjct: 254 FSQFCLGK 261 >gi|94992363|ref|YP_600462.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase [Streptococcus pyogenes MGAS2096] gi|94545871|gb|ABF35918.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase [Streptococcus pyogenes MGAS2096] Length = 215 Score = 113 bits (282), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 65/194 (33%), Positives = 115/194 (59%), Gaps = 7/194 (3%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFG--LD- 57 + E +TI A+ST AI I+RLSG + + + K K + AS +G +D Sbjct: 3 ITKEFDTITAISTPLGEGAIGIVRLSGTDALAIAQSVFKGKN-LEQVASHTINYGHIIDP 61 Query: 58 --GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 G I+D+ ++ V +P++FT E+ E + HGGIAV N IL+ L + R+A PGEF++ Sbjct: 62 KTGTIIDEVMVSVMLAPKTFTRENVVEINTHGGIAVTNEILQLLIRQ-GARMAEPGEFTK 120 Query: 116 RAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEAD 175 RAF NG++DL +AE++ D+I ++T+ ++++ + G LS L ++ + + +E + Sbjct: 121 RAFLNGRVDLTQAEAVMDIIRAKTDKAMTIAVKQLDGSLSQLINDTRQEILNTLAQVEVN 180 Query: 176 LDFSEEEDVQNFSS 189 +D+ E +DV+ ++ Sbjct: 181 IDYPEYDDVEEMTT 194 >gi|283778508|ref|YP_003369263.1| small GTP-binding protein [Pirellula staleyi DSM 6068] gi|283436961|gb|ADB15403.1| small GTP-binding protein [Pirellula staleyi DSM 6068] Length = 407 Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 97/347 (27%), Positives = 156/347 (44%), Gaps = 57/347 (16%) Query: 74 SFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLAD 133 + D+AE HGG + V I + LA+ L +P + R+ D L+ +++ Sbjct: 81 ALVAPDAAEISCHGGRSAVARITQSLARE-GCVLVDPALYVARS----TCDALKLQAMER 135 Query: 134 LISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193 L ++T + ++ G LSS ID L E DV ++ + Sbjct: 136 LTRAKTSLAAAHLLDQTRGALSSAVRYMIDSL--------------ERGDVAG--ARRQI 179 Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253 D+L + H+++ Y++ I+G NAGKS+L N L A+V D PGT Sbjct: 180 KDLLTTARQ-AIHLTEP---------YRVTIVGRPNAGKSALLNQLVGYARAMVFDQPGT 229 Query: 254 TRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313 TRDV+ + L GY V+ISDTAG+RET + +E+EGI+RT + DL LL+ + ++ Sbjct: 230 TRDVVQVTTALGGYAVEISDTAGVRETSEPIEREGIERTLASIATCDLALLVFDQSAPLT 289 Query: 314 IS--------FPK-NIDFIFIGTKSDLYSTYTEEYDHLI------------SSFTGEGLE 352 P+ I +G KSDL + E I S+ TG G+ Sbjct: 290 ADDQAFLAQVLPRLTAALIVVGNKSDLPPQCSFEQLAAINTTIARAPSLSASALTGAGIR 349 Query: 353 ELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399 EL+ ++L + P + S L Q R + +A+L++ + Sbjct: 350 ELL----ALLEKQLVPTPLAQGSPLLFSRELEQAFRQI-LAALDQSN 391 >gi|70944814|ref|XP_742297.1| hypothetical protein [Plasmodium chabaudi chabaudi] gi|56521196|emb|CAH74740.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi] Length = 529 Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 120/523 (22%), Positives = 211/523 (40%), Gaps = 125/523 (23%) Query: 40 KKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHG----------GI 89 KK RK + ++D + F SP S+TGED E + HG I Sbjct: 10 KKNIESRKLYYSKIYDNSNDVIDNVMYSYFKSPNSYTGEDVVEIYCHGNPFIVKEIMGAI 69 Query: 90 AVVNGILEE-----------------------------LAKMPNLRLANPGEFSRRAFEN 120 VN IL E L +R + GEF++RAFEN Sbjct: 70 EHVNSILYEVINAEKEKIRSRQIMDDDNFDKVGQTLFDLTNFIKIRESKRGEFTQRAFEN 129 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSE 180 K+DLL+ E L +L+ + ++Q+++++ ++G ++Y + + + + +I+ +DF E Sbjct: 130 NKMDLLQIEGLKELLFCKQKIQKKIALNYLNGYAKNIYLKLRNNIKKLLVYIQLKIDF-E 188 Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKL------GEIIRNGYKIVILGHSNAGKSS 234 +E + K+ +N + +K +++ I K E + ++I G+ NAGKS+ Sbjct: 189 DEHIITKKKKKYIN--MLIKKKVNNAIKNIKTILKRENIESLNTPSNVLIFGNVNAGKST 246 Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI----------------R 278 N + D++IVT I GTT D++ ++ + D+AGI + Sbjct: 247 FMNYICNSDISIVTKIKGTTIDIIQKNIKIFNNDYNFCDSAGINNLVNTKLEADKDEQHK 306 Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEIN-------------SKKEISFPKNIDFIFI 325 +E GIK+T +E + +L IN ++K ++ K + F+ Sbjct: 307 NVHKKLESIGIKKTLNFLEKCSSVFVLININNYFNELKNVISLLNRKFMNNAKKTPYFFV 366 Query: 326 G-TKSDLYST------YTEEYDHLISSF-------------------TGEGLEELINKIK 359 K DL ++S+F G + +L+ Sbjct: 367 CINKCDLQQNPEKLLKIKNNVKKMLSNFLNPRIFKKFNKKIFFISSKKGNNINKLLLHFN 426 Query: 360 SILSNKF-------------KKLPFSIPSHKRHLY---------HLSQTVRYLEMASLNE 397 + NK K+ ++ S +++Y +L +++ +L N Sbjct: 427 KTMVNKQSLHNSTINIDVEKNKIKKNLSSDNKNIYFLPFERHKIYLKESLTHLSFVQKNI 486 Query: 398 KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 DIIAE ++LA L +I G + EQ+L I FCIGK Sbjct: 487 NLVDFDIIAEEIKLAVKPLHEIIGKISNEQILSNILDTFCIGK 529 >gi|163784025|ref|ZP_02178984.1| tRNA modification GTPase [Hydrogenivirga sp. 128-5-R1-1] gi|159880710|gb|EDP74255.1| tRNA modification GTPase [Hydrogenivirga sp. 128-5-R1-1] Length = 270 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 92/271 (33%), Positives = 146/271 (53%), Gaps = 14/271 (5%) Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 DV+ ++ D+ + N I + +S K G+++ G K+ I G N GKSSLFNAL Sbjct: 1 DVEEIPLTDIKKDLEAVINQIKNLLSTYKKGKLVTEGIKLAIAGRPNVGKSSLFNALIGY 60 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 + AIV++I GTTRD + ++ G VK+ DTAGIRE D +EK GI++T +++ AD++ Sbjct: 61 ERAIVSEIKGTTRDFIEESFNIHGIPVKLIDTAGIREAGDKIEKIGIEKTKEKIKEADIV 120 Query: 303 LLL---KEINSKKEISFPKNIDF---IFIGTKSD-LYSTYTEEYDH----LISSFTGEGL 351 L + E ++++ ++I I + KSD L Y ++Y S+ T EG+ Sbjct: 121 LFVFDAYEGLTEEDFKIYEDIKHKSPIIVANKSDLLLDKYEKKYYFKDIIFTSTKTQEGI 180 Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCG--LDIIAENL 409 +EL NKI + L + + + RH L ++++ LE N K+ +I+ + Sbjct: 181 QELENKILNTLGLT-EDTDSEVYINIRHQTVLEKSLKLLEKIYNNLKNYENFKEILMLEI 239 Query: 410 RLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 R LG+I G + E +L IFS FCIGK Sbjct: 240 REVKELLGEIIGEITTEDILGNIFSSFCIGK 270 >gi|213022849|ref|ZP_03337296.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 149 Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 59/151 (39%), Positives = 90/151 (59%), Gaps = 2/151 (1%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRI 60 M+H +TI A +T + I+R+SG V + + K P PR A F +DG Sbjct: 1 MSH-NDTIVAQATPPGRGGVGILRISGLKARDVAQEVLGKL-PKPRYADYLPFKDVDGSA 58 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 LD+G+ + FP P SFTGED E HGG +++ +L+ + +P +R+A PGEFS RAF N Sbjct: 59 LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPGVRIARPGEFSERAFLN 118 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMS 151 K+DL +AE++ADLI + +E R ++ ++ Sbjct: 119 DKLDLAQAEAIADLIDASSEQAARSALNSLT 149 >gi|302421192|ref|XP_003008426.1| tRNA modification GTPase GTPBP3 [Verticillium albo-atrum VaMs.102] gi|261351572|gb|EEY14000.1| tRNA modification GTPase GTPBP3 [Verticillium albo-atrum VaMs.102] Length = 202 Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 64/173 (36%), Positives = 98/173 (56%), Gaps = 16/173 (9%) Query: 37 ICKKKK-PFPRKASLRYFFGLDG----RILDKGLLIV-FPSPESFTGEDSAEFHVHGGIA 90 +C + P PR+A++R + +LD LI+ F P + TG+D E HVHGG A Sbjct: 9 LCPSRALPPPRQATVRTLYDPSAPPTANVLDPSALILYFAGPRTVTGDDVLELHVHGGQA 68 Query: 91 VVNGILEELAKMPN-----LRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRL 145 V +L + + + +R A PGEF+RRAF N ++DL + ESL D ++++TE QR Sbjct: 69 TVKAVLAAIPRCASASVAVVRYAEPGEFTRRAFLNDRLDLTQVESLGDTLAADTEQQRLA 128 Query: 146 SMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNF--SSKEVLNDI 196 ++ G SG L Y +W L R+ +EA +DFSE+ Q+F S E+L ++ Sbjct: 129 AVRGSSGALGRTYEEWRATLLAARAELEALIDFSED---QHFDESPAELLRNV 178 >gi|198274784|ref|ZP_03207316.1| hypothetical protein BACPLE_00943 [Bacteroides plebeius DSM 17135] gi|198272231|gb|EDY96500.1| hypothetical protein BACPLE_00943 [Bacteroides plebeius DSM 17135] Length = 265 Score = 109 bits (273), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 81/265 (30%), Positives = 133/265 (50%), Gaps = 42/265 (15%) Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 +G ++NG + I+G +NAGKS+L NAL ++ AIV+DI GTTRDV+ ++L G + Sbjct: 7 VGNALKNGVPVAIVGETNAGKSTLLNALLNEERAIVSDIHGTTRDVIEDTMNLGGITFRF 66 Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE---------ISFPKNIDF 322 DTAGIRET D +E GI+R+F +++ AD++L + + +E + KN Sbjct: 67 IDTAGIRETTDTIESLGIERSFQKLDQADIVLWVIDATCAEEQYRQLADKILPRCKNKHL 126 Query: 323 IFIGTKSDLYSTYTEEYDHLISSFTG-------------------EGLEELINKIKSILS 363 + + K+DL S+ D ++ EGL +L ++ Sbjct: 127 VIVFNKADLLSSADSSADKQLARLKAALPDLPEDACVLSLSAKQKEGLSQLQKQLVD--- 183 Query: 364 NKFKKLP-----FSIPSHKRHLYHLSQTVRYLEMAS--LNEKDCGLDIIAENLRLASVSL 416 F LP + S+ RH LS+ + + L + G D+++++LR L Sbjct: 184 --FAALPDLSQNDVVVSNIRHYEALSRALEAIHRVQDGLAMQLSG-DLVSQDLRECLYHL 240 Query: 417 GKIT-GCVDVEQLLDIIFSKFCIGK 440 G+I G ++ +++L IF FCIGK Sbjct: 241 GEIVGGTIETDEVLGNIFKHFCIGK 265 >gi|255017531|ref|ZP_05289657.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL F2-515] Length = 158 Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 62/157 (39%), Positives = 92/157 (58%), Gaps = 4/157 (2%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRI 60 E +TI A+ST AI+IIRLSGP Q+ + I K S +G DG + Sbjct: 2 EFDTIAAISTPPGEGAIAIIRLSGPEAIQIADRIFYAKNSLSEAESHTIHYGHIKEDGEV 61 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +++ ++ V +P +FT ED E + HGGI VN +L+ L + LA PGEF++RAF N Sbjct: 62 IEEVMVTVMRAPRTFTREDVVEINAHGGIVSVNRVLQLLLR-NGANLAEPGEFTKRAFLN 120 Query: 121 GKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSL 157 G+IDL +AE++ DLI ++T+ +++ M G LS L Sbjct: 121 GRIDLSQAEAVMDLIRAKTDRAMGVAIRQMDGNLSRL 157 >gi|159162931|pdb|1RFL|A Chain A, Nmr Data Driven Structural Model Of G-Domain Of Mnme Protein Length = 172 Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 63/165 (38%), Positives = 92/165 (55%), Gaps = 17/165 (10%) Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272 G ++R G K+VI G NAGKSSL NALA ++ AIVTDI GTTRDVL + ++G + I Sbjct: 1 GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHII 60 Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS-----------FPKNID 321 DTAG+RE D VE+ GI+R + E+E AD +L + + + + P + Sbjct: 61 DTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLP 120 Query: 322 FIFIGTKSDLYST---YTEEYDHL---ISSFTGEGLEELINKIKS 360 + K+D+ +E H +S+ TGEG++ L N +K Sbjct: 121 ITVVRNKADITGETLGMSEVNGHALIRLSARTGEGVDVLRNHLKQ 165 >gi|121591475|ref|ZP_01678748.1| probable tRNA modification GTPase TrmE [Vibrio cholerae 2740-80] gi|121546677|gb|EAX56859.1| probable tRNA modification GTPase TrmE [Vibrio cholerae 2740-80] Length = 158 Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 50/129 (38%), Positives = 80/129 (62%) Query: 45 PRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPN 104 PR A F DG+ LD+G+ + FP+P SFTGED E HGG V++ ++ + ++ Sbjct: 28 PRYAEYLPFTDEDGQQLDQGIALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIKG 87 Query: 105 LRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDK 164 +R A PGEFS RAF N K+DL +AE++ADLI + +E + +++ + GE S ++ Sbjct: 88 VRPARPGEFSERAFLNDKMDLTQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVES 147 Query: 165 LTHIRSFIE 173 L H+R +++ Sbjct: 148 LIHLRIYVK 156 >gi|221053584|ref|XP_002258166.1| GTPase [Plasmodium knowlesi strain H] gi|193807999|emb|CAQ38703.1| GTPase, putative [Plasmodium knowlesi strain H] Length = 765 Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 97/394 (24%), Positives = 169/394 (42%), Gaps = 103/394 (26%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEF------------IC---------- 38 M E +TI+A+S+G SAI+++R+SG V E IC Sbjct: 138 MLSEGDTIYALSSGRDVSAIAVVRMSGSLSRIVLEVLLHGGENHIGNKICGEGNSEFSPE 197 Query: 39 ---------KKKKPFP-------------RKASLRYFFGLDGRILDKGLLIVFPSPESFT 76 KKK + RK + +D+ + F P+S+T Sbjct: 198 EPPPDIPAGKKKTEYSLDQVIKLRKDFEERKMYHGEIYSNSNEPIDQIMYTFFKGPKSYT 257 Query: 77 GEDSAEFHVHGGIAVVNGILEELAKMPNL------------------------------- 105 GED E + HG +VN I++E+ K+ L Sbjct: 258 GEDIVEIYCHGSPLIVNEIMDEIEKLNTLFSNLLKTEKQKYYSQNDKKENFTCTCSEEIW 317 Query: 106 ---------------RLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGM 150 RL+ GEF+RR+F NGK++LL+ E L +L+ + + Q+++++ + Sbjct: 318 NKLLTPRNDFFFNKIRLSMKGEFTRRSFLNGKMNLLQVEGLKELLWCKKKEQKKVALNYL 377 Query: 151 SGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDI-----LFLKNDISS 205 G+ ++Y + + + + + +D +E + SSKE +I L L+N I S Sbjct: 378 KGQARNVYVTLRNNMKKLLLYTQVKIDLEDE----HLSSKEERTNINQFIKLHLENVIES 433 Query: 206 --HISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD 263 I E + N +++ G N+GKS+L N + DV+IVT I G+T DV+ + Sbjct: 434 IRKILMKPNVEDLSNPLDVLLFGQVNSGKSTLMNRICGSDVSIVTRIKGSTIDVVQKGVS 493 Query: 264 LEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 + G D+AG+ + ++ +E ++R + V+ Sbjct: 494 IGGRSYNFCDSAGV--STHVLREEFLRRDYPNVD 525 Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 7/92 (7%) Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAEN 408 EG E N ++I S F LPF +RH HL + +++L + DIIAE Sbjct: 681 EGKNEEENTGENIHSPTF--LPF-----ERHKTHLRRALKHLLFIKRHRHLLTFDIIAEE 733 Query: 409 LRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++LA +L I G ++L+ I FC+GK Sbjct: 734 IKLAVKALNGIIGGFSQAKILNEILDSFCVGK 765 >gi|260890873|ref|ZP_05902136.1| tRNA modification GTPase TrmE [Leptotrichia hofstadii F0254] gi|260859426|gb|EEX73926.1| tRNA modification GTPase TrmE [Leptotrichia hofstadii F0254] Length = 214 Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 65/179 (36%), Positives = 99/179 (55%), Gaps = 4/179 (2%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA--SLRYFFGLDG-RILD 62 +TI A+ST I+IIR+SG F++ + I KK P L Y F DG +I+D Sbjct: 4 DTIAAISTPKGEGGIAIIRISGDKSFEILDKIFIKKNPNADLGFYKLNYGFIKDGEKIVD 63 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 + + + +P+S+T ED E + HGG V +LE L R A GEF++RAF NG+ Sbjct: 64 EAMAVRLKAPKSYTCEDIVEINCHGGTLVSEKVLE-LVLRNGARHAESGEFTKRAFMNGR 122 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEE 181 IDL +AE++ D+I +TE LS++ + G+L ++ L I + + LD+ EE Sbjct: 123 IDLSQAEAVMDIIQGKTEKSVSLSLDQLRGDLRDKVNEFKKALLDITAHVNVVLDYPEE 181 >gi|156097935|ref|XP_001615000.1| tRNA modification GTPase trmE [Plasmodium vivax SaI-1] gi|148803874|gb|EDL45273.1| tRNA modification GTPase trmE, putative [Plasmodium vivax] Length = 761 Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 72/273 (26%), Positives = 131/273 (47%), Gaps = 62/273 (22%) Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNL--------------- 105 +D+ + F SP+S+TGED E + HG +VN I+EE+ K+ +L Sbjct: 228 IDQVVYSFFKSPKSYTGEDVVEIYCHGSPLIVNEIMEEIEKLNSLFANILKSEKEKYFLS 287 Query: 106 --------------------------------RLANPGEFSRRAFENGKIDLLEAESLAD 133 R + GEF+RRAF+NGK++LL+ E L + Sbjct: 288 QIGKNDNFTCTCSEEIWNKLVNTRNDAFFSKIRPSRRGEFTRRAFQNGKMNLLQVEGLKE 347 Query: 134 LISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193 L+ + Q+++++ ++G+ +Y + + + + + +D +E + SS E Sbjct: 348 LLWCSKKEQKKIALNYLNGKAKKIYATLRNDMKKLLLYTQVKIDLEDE----HLSSDEER 403 Query: 194 NDI-LFLKNDISSHISQGKLGEIIRN--------GYKIVILGHSNAGKSSLFNALAKKDV 244 + I F++ +S+ I G + +I+R +++ G N+GKS+L N + + DV Sbjct: 404 SSINRFIQRHLSNAI--GSIRKILRQPNVEDLSTPLDVLLFGQVNSGKSTLMNRICRSDV 461 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 +IVT I G+T DV+ + +EG D+AG+ Sbjct: 462 SIVTRIQGSTIDVVQKGVTVEGRPYNFCDSAGV 494 Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 5/72 (6%) Query: 369 LPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQL 428 LPF +RH HL + +++L + DIIAE LRLA +L I G ++ Sbjct: 695 LPF-----ERHKTHLRRALKHLLFIKRHRHLLTFDIIAEELRLAVAALNAIIGGFSQARI 749 Query: 429 LDIIFSKFCIGK 440 L+ I FC+GK Sbjct: 750 LNEILETFCVGK 761 >gi|237756509|ref|ZP_04585039.1| tRNA modification GTPase TrmE [Sulfurihydrogenibium yellowstonense SS-5] gi|237691325|gb|EEP60403.1| tRNA modification GTPase TrmE [Sulfurihydrogenibium yellowstonense SS-5] Length = 267 Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 89/261 (34%), Positives = 140/261 (53%), Gaps = 27/261 (10%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 +K+ I ++ K G +I+ G K+ I+G N GKSSLFNAL + AIV++I GTTRD + Sbjct: 15 VKSQIEKLLASYKKGNLIKEGIKLAIVGRPNVGKSSLFNALVGYERAIVSEIQGTTRDFI 74 Query: 259 TIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS------KK 312 L ++ V + DTAG+R+T+D +EK GI++ ++ AD+IL + + +S KK Sbjct: 75 EESLKIKDIPVILLDTAGLRDTEDKIEKIGIEKAQEKINEADIILFVIDASSGFTEEDKK 134 Query: 313 EISFPKNIDFIFIGTKSDLYST---YTEEYDHLI--SSFTGEGLEELINKIKSIL----- 362 K+ I + KSDL + + E+YD+++ S +G++EL KI + L Sbjct: 135 IYDKIKDKPHITVVNKSDLNNKPIDFFEKYDNIVYTSVVNNQGIKELEEKIITSLGIIEK 194 Query: 363 -SNKFKKLPFS--IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKI 419 + F L S + K + + + YL +N K+ + I E L L ++ Sbjct: 195 EDDLFINLRQSTLLKQAKEKIEEIENHINYL----INNKEILMIYIQEALNY----LDEV 246 Query: 420 TGCVDVEQLLDIIFSKFCIGK 440 G + E +LD IFSKFCIGK Sbjct: 247 VGAISTEDVLDNIFSKFCIGK 267 >gi|325116750|emb|CBZ52303.1| tRNA modification GTPase TrmE, related [Neospora caninum Liverpool] Length = 852 Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 67/190 (35%), Positives = 109/190 (57%), Gaps = 10/190 (5%) Query: 99 LAKMPNLRLANPGEFSRRAFENGKIDLLE-AESLADLISSETEMQRRLSMEGM---SGEL 154 L ++ LRLA GEF+ RA+ NGKI+ ++ E+LADL++++T Q RL++ + E+ Sbjct: 219 LREVGELRLAEAGEFTFRAYLNGKIETVQQVEALADLVNADTVAQHRLAVRRLRRQPREV 278 Query: 155 SSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNF------SSKEVLNDILFLKNDISSHIS 208 +L W L +F EA L+ ++ + + + + L +I H+ Sbjct: 279 HALLDNWRGLLQEALAFSEAALEIGDDAQEADAEAAQEAGATKAEARVRRLLREIRLHLE 338 Query: 209 QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL 268 G ++ +G K+V G +NAGKS+LFN+L +D AIV+ + GTTRDVLT + L G Sbjct: 339 LGLREALVHSGVKVVFCGPTNAGKSTLFNSLVGRDAAIVSPLAGTTRDVLTWPVQLRGAK 398 Query: 269 VKISDTAGIR 278 + ++DTAG+R Sbjct: 399 LLLTDTAGLR 408 >gi|270717108|ref|ZP_06223233.1| conserved hypothetical protein [Haemophilus influenzae HK1212] gi|270315556|gb|EFA27772.1| conserved hypothetical protein [Haemophilus influenzae HK1212] Length = 155 Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 53/98 (54%), Positives = 69/98 (70%) Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267 S+ K G I+R G K+VI G NAGKSSL NALA ++ AIVTDI GTTRDVL + ++G Sbjct: 25 SEAKQGSILREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM 84 Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 + I DTAG+R+ D VE+ GI R + E+E AD I+L+ Sbjct: 85 PLHIIDTAGLRDATDEVERIGISRAWTEIEQADRIILM 122 >gi|121591728|ref|ZP_01678946.1| probable tRNA modification GTPase TrmE [Vibrio cholerae 2740-80] gi|121546410|gb|EAX56653.1| probable tRNA modification GTPase TrmE [Vibrio cholerae 2740-80] Length = 221 Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 76/222 (34%), Positives = 114/222 (51%), Gaps = 19/222 (8%) Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 NAL+ K+ AIVTDI GTTRDVL + ++G + I DTAG+R+ D VEK GI+R + E+ Sbjct: 1 NALSGKESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDAVEKIGIERAWEEI 60 Query: 297 ENADLILLL-----KEINSKKEI------SFPKNIDFIFIGTKSD-----LYSTYTEEYD 340 AD +L + E ++I P+NI I K+D L + + Sbjct: 61 RQADRVLFMVDGTTTEATDPQDIWPDFVDKLPENIGITVIRNKADQTGEPLGICHVNQPT 120 Query: 341 HL-ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EK 398 + +S+ TG+G++ L +K + + + +RHL L + +L + E Sbjct: 121 LIRLSAKTGQGVDALRQHLKECMGFSGNQ-EGGFMARRRHLDALERAAEHLAIGQQQLEG 179 Query: 399 DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +I+AE LR+A L +ITG + LL IFS FCIGK Sbjct: 180 YMAGEILAEELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 221 >gi|110590301|pdb|2GJ9|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-, Mg2+ And Rb+ gi|110590302|pdb|2GJ9|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-, Mg2+ And Rb+ gi|110590303|pdb|2GJ9|C Chain C, Structure Of The Mnme G-Domain In Complex With GdpAlf4-, Mg2+ And Rb+ gi|110590304|pdb|2GJ9|D Chain D, Structure Of The Mnme G-Domain In Complex With GdpAlf4-, Mg2+ And Rb+ gi|110590305|pdb|2GJA|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-, Mg2+ And Nh4+ gi|110590306|pdb|2GJA|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-, Mg2+ And Nh4+ Length = 172 Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 61/160 (38%), Positives = 89/160 (55%), Gaps = 17/160 (10%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 +G K+VI G NAGKSSL NALA ++ AIVTDI GTTRDVL + ++G + I DTAG+ Sbjct: 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGL 62 Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS-----------FPKNIDFIFIG 326 RE D VE+ GI+R + E+E AD +L + + + + P + + Sbjct: 63 REASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVR 122 Query: 327 TKSDLYS---TYTEEYDHL---ISSFTGEGLEELINKIKS 360 K+D+ +E H +S+ TGEG++ L N +K Sbjct: 123 NKADITGETLGMSEVNGHALIRLSARTGEGVDVLRNHLKQ 162 >gi|32474218|ref|NP_867212.1| tRNA modification GTPase [Rhodopirellula baltica SH 1] gi|32444756|emb|CAD74757.1| probable tRNA modification GTPase [Rhodopirellula baltica SH 1] Length = 426 Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 113/423 (26%), Positives = 180/423 (42%), Gaps = 57/423 (13%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGP---SCFQVCEFICKKKKPFPRKASLRYFFGL- 56 M ET TG SA+++I L GP C Q C +RY Sbjct: 23 MTSTNETTATRLTGVGLSAVAVIGLRGPRALQCVQDCFTPATNASSSLSAGQVRYGTWKS 82 Query: 57 --DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114 DG G IV +P + + S E H HGG A V+ IL L R E S Sbjct: 83 SDDG----PGESIVL-TPMT---DGSFEIHGHGGEAAVSAILASLTD----RGVESVESS 130 Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174 ++ I L EAE + L T Q ++++ G+L+ W+ ++ + S E Sbjct: 131 TWQ-KSAPILLSEAEHV--LQRCVTSQQAAVALDQTRGQLAQWGQHWLQRIDEVSSSDE- 186 Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234 SEE + + + L D + + G+ G + ++V+ G N GKSS Sbjct: 187 ---LSEETE----------SLLAALCKDAQTIAANGERGVRLTEPRRLVLAGPPNVGKSS 233 Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI------VEKEG 288 L N + +I D GTTRDVL D + G V++SDTAGIRET + +E+EG Sbjct: 234 LMNQIVGFRRSITHDSAGTTRDVLQCDTVIAGVPVRMSDTAGIRETSHLTESSVAIEREG 293 Query: 289 IKRTFLEVENADLILLLKEINS-------KKEISFPKNIDFIFIGTKSDLYSTYTE---- 337 I+R + VE+ADL+L++ + ++ ++ + + + K+DL S + Sbjct: 294 IRRASVAVESADLLLIVCQPSTLIDLQDFRRSLPVSNKTHVVEVLNKADLLSDNAKSIAN 353 Query: 338 --EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL---YHLSQTVRYLEM 392 E+ + S G+ +L+ + + L+ +P +R L L QT Sbjct: 354 EIEHQTIASEDDDPGVGKLMKTLAAHLTATLPPRHSPVPICQRQLELTNQLCQTTSLKNA 413 Query: 393 ASL 395 A++ Sbjct: 414 ATM 416 >gi|221483862|gb|EEE22166.1| GTPase mss1/trme, putative [Toxoplasma gondii GT1] Length = 981 Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 69/194 (35%), Positives = 109/194 (56%), Gaps = 10/194 (5%) Query: 99 LAKMPNLRLANPGEFSRRAFENGKID-LLEAESLADLISSETEMQRRLSMEGMSGELSS- 156 L+ + +LR A GEF+ RAF NGKI+ + + E+LADL++++T Q RL++ + Sbjct: 373 LSSVGDLRPAEAGEFTLRAFLNGKIESVQQVEALADLLNADTVAQHRLALRRLRRHPREL 432 Query: 157 --LYGQWIDKLTHIRSFIEADL---DFSEEEDVQ---NFSSKEVLNDILFLKNDISSHIS 208 L +W L +F EA L D ++E D + +++ + L ++ + Sbjct: 433 RDLLERWRKLLQEALAFSEAALEIGDDAQEADAELARACGAQDAEKRVRRLLQELRCQLE 492 Query: 209 QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL 268 G +++ G +V G +NAGKS+LFN+L +D AIV+ I GTTRDVLT + L G Sbjct: 493 LGMRDALVQTGVTVVFCGPTNAGKSTLFNSLVGRDTAIVSPIAGTTRDVLTAPIQLSGSK 552 Query: 269 VKISDTAGIRETDD 282 V ++DTAG+R D Sbjct: 553 VLLTDTAGLRPARD 566 >gi|255522653|ref|ZP_05389890.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL J1-175] Length = 146 Score = 99.8 bits (247), Expect = 9e-19, Method: Composition-based stats. Identities = 57/140 (40%), Positives = 84/140 (60%), Gaps = 4/140 (2%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGL---DGRI 60 E +TI A+ST AI+IIRLSGP Q+ + I K S +G DG + Sbjct: 2 EFDTIAAISTPPGEGAIAIIRLSGPEAIQIADRIFYAKNSLSEAESHTIHYGHIKEDGEV 61 Query: 61 LDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFEN 120 +++ ++ V +P +FT ED E + HGGI VN +L+ L + LA PGEF++RAF N Sbjct: 62 IEEVMVTVMRAPRTFTREDVVEINAHGGIVSVNRVLQLLLR-NGANLAEPGEFTKRAFLN 120 Query: 121 GKIDLLEAESLADLISSETE 140 G+IDL +AE++ DLI ++T+ Sbjct: 121 GRIDLSQAEAVMDLIRAKTD 140 >gi|237836819|ref|XP_002367707.1| hypothetical protein TGME49_004350 [Toxoplasma gondii ME49] gi|211965371|gb|EEB00567.1| hypothetical protein TGME49_004350 [Toxoplasma gondii ME49] Length = 990 Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 69/194 (35%), Positives = 109/194 (56%), Gaps = 10/194 (5%) Query: 99 LAKMPNLRLANPGEFSRRAFENGKID-LLEAESLADLISSETEMQRRLSMEGMSGELSS- 156 L+ + +LR A GEF+ RAF NGKI+ + + E+LADL++++T Q RL++ + Sbjct: 382 LSSVGDLRPAEAGEFTLRAFLNGKIESVQQVEALADLLNADTVAQHRLALRRLRRHPREL 441 Query: 157 --LYGQWIDKLTHIRSFIEADL---DFSEEEDVQ---NFSSKEVLNDILFLKNDISSHIS 208 L +W L +F EA L D ++E D + +++ + L ++ + Sbjct: 442 RDLLERWRKLLQEALAFSEAALEIGDDAQEADAELARACGAQDAEKRVRRLLQELRCQLE 501 Query: 209 QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL 268 G +++ G +V G +NAGKS+LFN+L +D AIV+ I GTTRDVLT + L G Sbjct: 502 LGMRDALVQTGVTVVFCGPTNAGKSTLFNSLVGRDTAIVSPIAGTTRDVLTAPIQLSGSK 561 Query: 269 VKISDTAGIRETDD 282 V ++DTAG+R D Sbjct: 562 VLLTDTAGLRPARD 575 >gi|167947905|ref|ZP_02534979.1| tRNA modification GTPase TrmE [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 118 Score = 99.4 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 52/109 (47%), Positives = 72/109 (66%) Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253 ND+ L ++ I G ++R+G +VI G NAGKSSL N L+ ++ AIVTDIPGT Sbjct: 6 NDLKTLTEQLAQLIQSANTGRLLRDGMTLVIAGRPNAGKSSLLNQLSGEERAIVTDIPGT 65 Query: 254 TRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 TRD+L + ++G + I DTAGIR+++D VE EGI+R E+E AD I Sbjct: 66 TRDLLREQIQIDGLPLHIIDTAGIRDSEDPVEIEGIRRARQEIEQADRI 114 >gi|221505148|gb|EEE30802.1| GTP-binding protein enga, putative [Toxoplasma gondii VEG] Length = 990 Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 69/194 (35%), Positives = 109/194 (56%), Gaps = 10/194 (5%) Query: 99 LAKMPNLRLANPGEFSRRAFENGKID-LLEAESLADLISSETEMQRRLSMEGMSGELSS- 156 L+ + +LR A GEF+ RAF NGKI+ + + E+LADL++++T Q RL++ + Sbjct: 382 LSSVGDLRPAEAGEFTLRAFLNGKIESVQQVEALADLLNADTVAQHRLALRRLRRHPREL 441 Query: 157 --LYGQWIDKLTHIRSFIEADL---DFSEEEDVQ---NFSSKEVLNDILFLKNDISSHIS 208 L +W L +F EA L D ++E D + +++ + L ++ + Sbjct: 442 RDLLERWRKLLQEALAFSEAALEIGDDAQEADAELARACGAQDAEKRVRRLLQELRCQLE 501 Query: 209 QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL 268 G +++ G +V G +NAGKS+LFN+L +D AIV+ I GTTRDVLT + L G Sbjct: 502 LGMRDALVQTGVTVVFCGPTNAGKSTLFNSLVGRDTAIVSPIAGTTRDVLTAPIQLSGSK 561 Query: 269 VKISDTAGIRETDD 282 V ++DTAG+R D Sbjct: 562 VLLTDTAGLRPARD 575 >gi|110590297|pdb|2GJ8|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-, Mg2+ And K+ gi|110590298|pdb|2GJ8|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-, Mg2+ And K+ gi|110590299|pdb|2GJ8|C Chain C, Structure Of The Mnme G-Domain In Complex With GdpAlf4-, Mg2+ And K+ gi|110590300|pdb|2GJ8|D Chain D, Structure Of The Mnme G-Domain In Complex With GdpAlf4-, Mg2+ And K+ Length = 172 Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 61/159 (38%), Positives = 88/159 (55%), Gaps = 17/159 (10%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 +G K+VI G NAGKSSL NALA ++ AIVTDI GTTRDVL + ++G + I DTAG+ Sbjct: 3 HGXKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGXPLHIIDTAGL 62 Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS-----------FPKNIDFIFIG 326 RE D VE+ GI+R + E+E AD +L + + + P + + Sbjct: 63 REASDEVERIGIERAWQEIEQADRVLFXVDGTTTDAVDPAEIWPEFIARLPAKLPITVVR 122 Query: 327 TKSDLYSTY---TEEYDHL---ISSFTGEGLEELINKIK 359 K+D+ +E H +S+ TGEG++ L N +K Sbjct: 123 NKADITGETLGXSEVNGHALIRLSARTGEGVDVLRNHLK 161 >gi|87308881|ref|ZP_01091020.1| tRNA modification GTPase TrmE [Blastopirellula marina DSM 3645] gi|87288592|gb|EAQ80487.1| tRNA modification GTPase TrmE [Blastopirellula marina DSM 3645] Length = 383 Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 90/295 (30%), Positives = 132/295 (44%), Gaps = 37/295 (12%) Query: 74 SFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLAD 133 S TG + E H HGG+A IL L + R E++ R E +LA Sbjct: 73 SRTGPERLEVHCHGGVAASRRILNHL-QAAGCREIAWTEYAERT-EAAPTIAAARIALAR 130 Query: 134 LISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVL 193 +S T L Q+ L + I A LD E D Q Sbjct: 131 ARTSRTAAH--------------LLDQYNGALQSELASIAALLDSQETSDAQ-------- 168 Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253 L+ I++ ++ + G + +K+VI G N GKSSL NAL + AIV D PGT Sbjct: 169 -----LR--ITALLATARFGLHLTRPWKVVIAGRPNVGKSSLINALVGYERAIVFDQPGT 221 Query: 254 TRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS--- 310 TRD +T +G+ V+++DTAG+RE+DD +E+EG+ R ADLILL + ++ Sbjct: 222 TRDAVTAAAAFDGWPVELADTAGLRESDDAIEREGVSRARQLQSEADLILLAFDASAAWT 281 Query: 311 -KKEISFPKNIDFIFIGTKSDL--YSTYTEEYDHLISSFTGEGLEELINKIKSIL 362 + + + D I + K DL S+ +S+ G+G+ LI I L Sbjct: 282 DEDQQLVDAHPDAIIVHNKCDLPISSSGHRPAGLKVSAQRGDGIALLIETIGHAL 336 >gi|320102486|ref|YP_004178077.1| small GTP-binding protein [Isosphaera pallida ATCC 43644] gi|319749768|gb|ADV61528.1| small GTP-binding protein [Isosphaera pallida ATCC 43644] Length = 404 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 91/324 (28%), Positives = 144/324 (44%), Gaps = 54/324 (16%) Query: 82 EFHVHGGIAV---VNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSE 138 EF HGG+A V ILE P P R E + ++A++ DL + Sbjct: 113 EFQGHGGLAARQAVEAILEAAGSRPV-----PARVWR--IETQGLTTIQADAYDDLAYAP 165 Query: 139 TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILF 198 T + ++ G L + DLD E + + + L LF Sbjct: 166 TRRTAAILLDQALGAL------------------DRDLDSLERLEADDPACAADLRATLF 207 Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 + ++ S + +G+ + + G N GKSSL NALA AIV+ GTTRDVL Sbjct: 208 QRFEVGSRLI---------SGWNVALAGRPNVGKSSLMNALAGHARAIVSPQAGTTRDVL 258 Query: 259 TIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI--- 314 T+ L +G+ + + DTAG+R + D +E +GI R ADL+LLL + + E Sbjct: 259 TVPLACDGWPMTLFDTAGLRDQPSDDLEAQGILRARNAQTQADLVLLLLDSSQPLEPLDL 318 Query: 315 ----SFPKNIDFIFIGTKSDLYSTYTEE----YDHLI--SSFTGEGLEELINKIKSILSN 364 ++P + + + TK+DL + E L+ S+ TGEGL+ L++++ L Sbjct: 319 ALLHTYP---NALLVATKADLAPHWRAEDLPTTRKLVSLSALTGEGLDRLLDRLAQRLVP 375 Query: 365 KFKKLPFSIPSHKRHLYHLSQTVR 388 ++P HL L++T R Sbjct: 376 NPPPAGSAVPFRIDHLTQLNRTNR 399 >gi|221042244|dbj|BAH12799.1| unnamed protein product [Homo sapiens] Length = 151 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 50/107 (46%), Positives = 65/107 (60%), Gaps = 2/107 (1%) Query: 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK-PFPRKASLRYFF-GLDGRILDKG 64 TIFA+S+G I++IR SGP+ + + P R ASLR G LD+ Sbjct: 35 TIFALSSGQGRCGIAVIRTSGPASGHALRILTAPRDLPLARHASLRLLSDPRSGEPLDRA 94 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPG 111 L++ FP P+SFTGED EFHVHGG AVV+G+L+ L +P LR A PG Sbjct: 95 LVLWFPGPQSFTGEDCVEFHVHGGPAVVSGVLQALGSVPGLRPAEPG 141 >gi|325109259|ref|YP_004270327.1| small GTP-binding protein [Planctomyces brasiliensis DSM 5305] gi|324969527|gb|ADY60305.1| small GTP-binding protein [Planctomyces brasiliensis DSM 5305] Length = 370 Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 91/328 (27%), Positives = 144/328 (43%), Gaps = 53/328 (16%) Query: 76 TGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLI 135 T S E H HGG A + ILE+L F KI E +S++ Sbjct: 74 TSTCSVEIHCHGGPAAIGRILEDLE-----------------FLGAKILPRETDSVSI-- 114 Query: 136 SSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFS-SKEVLN 194 G S LS L + R+F A+ +S+ + + +++L Sbjct: 115 -------------GHSRWLSDLE----TAVVQARTFRAAEFLWSQRPLLSVWERCEQILR 157 Query: 195 DILFLKNDISSHISQGK----LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250 + L ++ S + + G+ + +++VI G NAGKSSL NAL + AIV D Sbjct: 158 ENGPLPTELRSQLIEASRWSLFGQHLTQPWQVVIGGAPNAGKSSLINALLGYERAIVYDQ 217 Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIK--RTFLEVENADLILLLKEI 308 PGTTRD + + ++G+ V +SDTAG R + + +E GI+ RT L + +IL+ + Sbjct: 218 PGTTRDAVKAETAIDGWPVMLSDTAGQRASSETIEAAGIEIARTLLRSADLAVILIDRSA 277 Query: 309 NSKKEI-----SFPKNIDFIFIGTKSDLYSTYTE-EYDHL---ISSFTGEGLEELINKIK 359 S +I +FP N +F ++ +T+ E+D +S GLEEL+ I Sbjct: 278 PSDSDIETLLQAFP-NALVVFNKCDQSAHADWTDREFDSTVLEVSCRDQTGLEELLTTIT 336 Query: 360 SILSNKFKKLPFSIPSHKRHLYHLSQTV 387 L IP L+ L Q++ Sbjct: 337 EKLVPALPAADTLIPVTATQLHLLQQSL 364 >gi|327539637|gb|EGF26245.1| tRNA modification GTPase TrmE [Rhodopirellula baltica WH47] Length = 404 Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 108/405 (26%), Positives = 172/405 (42%), Gaps = 54/405 (13%) Query: 1 MNHEKETIFAVSTGALPSAISIIRLSGP---SCFQVCEFICKKKKPFPRKASLRYFFGL- 56 M ET TG SA+++I L GP C Q C +RY Sbjct: 1 MTSTNETTATRLTGVGLSAVAVIGLRGPRALQCVQDCFTPATNASSSLSAGQVRYGTWKS 60 Query: 57 --DGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFS 114 DG G IV +P + + S E H HGG A V+ IL L + + Sbjct: 61 SDDG----PGESIVL-TPMT---DGSFEIHGHGGEAAVSAILASLTDR-GVESVESSTWQ 111 Query: 115 RRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEA 174 + A I L EAE + L T Q ++++ G+L+ QW+ + I F + Sbjct: 112 KSA----PILLSEAEYV--LQRCVTGQQAAVALDQTRGQLAQWGQQWLQR---IDEFSSS 162 Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234 D E E + K D + + G+ G + ++V+ G N GKSS Sbjct: 163 DELSEESESLLAALCK-----------DAQTIATNGERGVRLTEPRRLVLAGPPNVGKSS 211 Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI------VEKEG 288 L N + +I D GTTRDVL D + G V++SDTAGIRET + +E+EG Sbjct: 212 LMNQIVGFRRSITHDSAGTTRDVLQCDTVIAGVPVRMSDTAGIRETSHLTESSVAIEREG 271 Query: 289 IKRTFLEVENADLILLLKEINS-------KKEISFPKNIDFIFIGTKSDLYSTYTE---- 337 I+R + +E+ADL+L++ + ++ ++ + + + K+DL S T+ Sbjct: 272 IRRASVAIESADLLLIVCQPSTLIDLQDFRRSLPVSNKTHVVEVLNKADLLSDNTKSIAG 331 Query: 338 --EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380 E+ + S G+ +L+ + + L+ +P +R L Sbjct: 332 EIEHQTIASEDDDPGVGKLMKTLAAHLTATLPPRHSPVPICQRQL 376 >gi|167947906|ref|ZP_02534980.1| tRNA modification GTPase TrmE [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 102 Score = 92.8 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 44/93 (47%), Positives = 62/93 (66%), Gaps = 1/93 (1%) Query: 53 FFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGE 112 F DG ++D G+L+ FP+P SFTGED EF HGG +++ +L+ + + +R A GE Sbjct: 1 FHDQDGSVIDTGILLYFPAPHSFTGEDVLEFQAHGGAVILDLLLQRILDL-GIRPARAGE 59 Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRL 145 F+ RAF NGKIDL +AE++ADLI + T RL Sbjct: 60 FTERAFLNGKIDLAQAEAVADLIEARTVSAARL 92 >gi|270667892|ref|ZP_06222479.1| conserved hypothetical protein [Haemophilus influenzae HK1212] gi|270316770|gb|EFA28527.1| conserved hypothetical protein [Haemophilus influenzae HK1212] Length = 112 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 47/86 (54%), Positives = 61/86 (70%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 K+VI G NAGKSSL NALA ++ AIVTDI GTTRDVL + ++G + I DTAG+R+ Sbjct: 1 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRD 60 Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305 D VE+ GI R + E+E AD I+L+ Sbjct: 61 ATDEVERIGISRAWTEIEQADRIILM 86 >gi|149176952|ref|ZP_01855561.1| tRNA modification GTPase [Planctomyces maris DSM 8797] gi|148844207|gb|EDL58561.1| tRNA modification GTPase [Planctomyces maris DSM 8797] Length = 387 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 101/397 (25%), Positives = 177/397 (44%), Gaps = 63/397 (15%) Query: 19 AISIIRLSG-----PSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPE 73 A++ IR+ G + C F +K + R +GL G+ ++ L++ Sbjct: 25 AVATIRVCGELISVAAAIDAC-FHAVNQKSLEAQPLNRIVYGLWGQGSNEDLVVCR---- 79 Query: 74 SFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLAD 133 +++ + H HGG+A V IL +L + SR ++E LA Sbjct: 80 --LDQNTVDIHCHGGMAAVERILSDLEEQ---------GCSRNSWEQ----------LAK 118 Query: 134 LISSE--TEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKE 191 +E E+Q RL+ L Q ++S EA L + Q+F++ Sbjct: 119 FTRTELDVELQERLTAATTFRTAEILLRQ---SEGLLKSAFEALLPV----EGQSFNTGH 171 Query: 192 VLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIP 251 ++ I + G + +++V+ G N GKSSL NA+ + +IV + Sbjct: 172 -------FQSQIEKLLYWEPFGLHLVTPWRVVLAGRPNVGKSSLINAILGYERSIVFNEA 224 Query: 252 GTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311 GTTRDVLT +EG+ ++ SDTAGIRE D +E GI+R ++++D L+L +++ Sbjct: 225 GTTRDVLTATTAIEGWPIQFSDTAGIREQADALETTGIQRAEQMMQSSDCNLILIDVSQP 284 Query: 312 KEISFPKNI----DFIFIGTKSDLYSTYTEEYDH---LISSFTGEGLEELINKIKSILSN 364 ++ + I D I + K+DL + + +SS T G++ L++++ L Sbjct: 285 EQADDQRLIALWSDSILVAHKTDLPRRWKQSLPDSAVSVSSITKSGIDILLDRLIQKLVP 344 Query: 365 KF--KKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399 + + P + S + L H R LE +LN+ D Sbjct: 345 EVPDQNTPVPVTSRQIQLLH-----RALE--ALNKAD 374 >gi|82540701|ref|XP_724648.1| tRNA modification GTPase [Plasmodium yoelii yoelii str. 17XNL] gi|23479363|gb|EAA16213.1| probable tRNA modification GTPase trme [Plasmodium yoelii yoelii] Length = 754 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 89/392 (22%), Positives = 151/392 (38%), Gaps = 122/392 (31%) Query: 3 HEKETIFAVSTGALPSAISIIRLSGP---------------------------------- 28 +EKETI+A+S+G SAISIIR+SG Sbjct: 126 NEKETIYALSSGTNLSAISIIRISGSLSKIILEILLHKDAEKDVEKDVEKKGDQINSYST 185 Query: 29 -------------SCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESF 75 + + E I KK RK + I+D + F SP S+ Sbjct: 186 QLLERNAKKKKKKKKWNLEEIIKLKKNIESRKLYYSKIYDNSNDIIDNVMYAYFKSPNSY 245 Query: 76 TGEDSAEFH----------VHGGIAVVNGILEE--------------------------- 98 TGED E + + I +N I+ E Sbjct: 246 TGEDVVEIYCHGNPFIVKEIMNAIDHINNIMYEIINDEKEKVKNKVKIKNKIKKTTHDEN 305 Query: 99 -------------------------LAKMPNLRLANPGEFSRRAFENGKIDLLEAESLAD 133 L +R + GEF+ RAFEN K++LL+ E L + Sbjct: 306 YNYNNDDWNYFNQIEQNQIEQTIFDLNNFVKIRESKKGEFTLRAFENNKMNLLQIEGLKE 365 Query: 134 LISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEE--------DVQ 185 L+ + ++Q+++++ ++G ++Y + + + + +I+ +DF ++ + Sbjct: 366 LLFCKQKIQKKIALNYLNGYAKNIYLKLRNDIKKLLIYIQLKIDFEDDHIITKKKKKYIN 425 Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 + K+V N I +K I + K E + ++I G+ NAGKS+ N + D++ Sbjct: 426 MYIKKKVNNSIKHIK-----EILKRKNIESLNTPSNVLIFGNVNAGKSTFMNYICNSDIS 480 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 IVT I GTT D++ + L D+AG+ Sbjct: 481 IVTKIKGTTLDIIQKTVKLFKNDYNFCDSAGV 512 >gi|10802646|gb|AAG23546.1|AF244597_1 thiophene degradation protein F [Carboxydothermus hydrogenoformans] Length = 184 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 61/189 (32%), Positives = 102/189 (53%), Gaps = 22/189 (11%) Query: 25 LSGPSCFQVCEFICKKKKPFPRK-------ASLRYFFGLD---GRILDKGLLIVFPSPES 74 LSG + I + P+ +K +L Y +D G + D+ L+ + P + Sbjct: 1 LSGDRALDIISRIFR---PYKKKDVKNVKTHTLHYGHIVDPDTGEVYDEVLVSIMKKPNT 57 Query: 75 FTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADL 134 +T ED E + HGGI V + ILE + K RLA PGEF++RAF NG+IDL +AE++ D+ Sbjct: 58 YTREDIVEINCHGGIVVTSKILELVLKQ-GARLAEPGEFTKRAFLNGRIDLSQAEAVIDI 116 Query: 135 ISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNF------- 187 I+++T + + + + +SG L + D++ + + + A +DF E+DV Sbjct: 117 ITAKTMLANKYAQKQLSGYLGQKMRKLKDRMMELLAHLLALIDFP-EDDVDELERWQMLE 175 Query: 188 SSKEVLNDI 196 S+KE+L +I Sbjct: 176 SAKEILKEI 184 >gi|218281198|ref|ZP_03487722.1| hypothetical protein EUBIFOR_00285 [Eubacterium biforme DSM 3989] gi|218217586|gb|EEC91124.1| hypothetical protein EUBIFOR_00285 [Eubacterium biforme DSM 3989] Length = 161 Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 51/155 (32%), Positives = 87/155 (56%), Gaps = 3/155 (1%) Query: 5 KETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDG--RILD 62 + TI A+ST AISIIRLSG ++ + I + + ++ Y F +D +D Sbjct: 3 ENTIAAISTSLQDGAISIIRLSGDQAIEITQKIFDRNIMNAKSHTIHYGFIIDPDKNPVD 62 Query: 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 + L+ +F +P+++T ED E + HGG + IL +A LA PGEF++RAF +G+ Sbjct: 63 EVLISIFRAPKTYTREDIVEINCHGGTFITRKILS-MALSAGADLAKPGEFTQRAFYHGR 121 Query: 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSL 157 IDL +AE++ D+I + +++ G+ G + + Sbjct: 122 IDLSQAEAVQDMIEASNNTAATMAIHGIKGSVKKI 156 >gi|296122241|ref|YP_003630019.1| small GTP-binding protein [Planctomyces limnophilus DSM 3776] gi|296014581|gb|ADG67820.1| small GTP-binding protein [Planctomyces limnophilus DSM 3776] Length = 411 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 57/193 (29%), Positives = 99/193 (51%), Gaps = 8/193 (4%) Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272 G + G+ + I+G NAGKSSL N L + +IV D PGTTRD++ + G+LV ++ Sbjct: 204 GRRLTEGWVVSIVGLPNAGKSSLINRLLGYERSIVIDQPGTTRDIVRASTAIGGWLVHLA 263 Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---KEISFPKNI-DFIFIGTK 328 DTAG+RE++D +E EGI++T ADL++ + + + ++ + D + + K Sbjct: 264 DTAGVRESEDPLEAEGIQKTMATAGQADLVMYVVDASQSLQAADVQLSRQFRDVVVLLNK 323 Query: 329 SDL---YSTYTEEYDHL-ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384 DL + D L IS+ T +G+ L++ + L + IP R L Sbjct: 324 CDLPMDRDVLQQWPDALPISTVTSQGIMPLLDILARRLMRRGPAPDVMIPVTLRQQSCLQ 383 Query: 385 QTVRYLEMASLNE 397 + + L + +++ Sbjct: 384 KVLTALRASDIDQ 396 >gi|168705339|ref|ZP_02737616.1| tRNA modification GTPase TrmE [Gemmata obscuriglobus UQM 2246] Length = 275 Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 55/169 (32%), Positives = 92/169 (54%), Gaps = 5/169 (2%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 +K+VI G N GKSSL NALA A+V+D+ GTTRD +++ +G+ V++ DTAGIR+ Sbjct: 71 WKVVIAGAPNVGKSSLINALAGYQRAVVSDVAGTTRDTVSVRTAFDGWPVELIDTAGIRD 130 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTE-- 337 + + E EGI R ++ ADL++ + + + + +P + KSD + Sbjct: 131 AEGL-EAEGIARAKRALDEADLVVWVLD-GAALRLEWPGAGRLHVVINKSDALVNRNDIA 188 Query: 338 EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT 386 L+S+ TGEG++ L N + + L + ++P + L L +T Sbjct: 189 RTLPLVSARTGEGVQNLANDLVTKLVPQPPAAGAAVP-YTPQLVDLVRT 236 >gi|207741911|ref|YP_002258303.1| trna modification gtpase protein [Ralstonia solanacearum IPO1609] gi|206593297|emb|CAQ60224.1| probable trna modification gtpase protein [Ralstonia solanacearum IPO1609] Length = 192 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 45/121 (37%), Positives = 69/121 (57%), Gaps = 4/121 (3%) Query: 8 IFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLI 67 I A++T I ++R+SGP V + +C + PR+A+ F DG +D+G+ + Sbjct: 36 IAAIATAPGRGGIGVVRVSGPDVRAVMQAVCGRLL-QPRQAAYLPFLDADGHAIDRGIAL 94 Query: 68 VFPSPESFTGEDSAEFHVHGGIAVVNGILE---ELAKMPNLRLANPGEFSRRAFENGKID 124 FP+P S+TGED E HGG V+ +L + + +R+A PGEF+RR F N K+D Sbjct: 95 WFPAPHSYTGEDVLELQGHGGPVVMQLLLSRCLQAGREIGVRVAEPGEFTRRPFLNDKMD 154 Query: 125 L 125 L Sbjct: 155 L 155 >gi|213418886|ref|ZP_03351952.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 186 Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 95/187 (50%), Gaps = 21/187 (11%) Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS-----------FPKNID 321 DTAG+R+ +D VE+ GI+R + E+E AD +L + + + + PKN+ Sbjct: 2 DTAGLRDANDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPADIWPDFIARLPKNLP 61 Query: 322 FIFIGTKSDLYSTY---TEEYDH---LISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375 + K+D+ +E H +S+ TGEG++ L N +K + + + Sbjct: 62 ITVVRNKADITGETLGISEVNGHSLVRLSARTGEGVDVLRNHLKQSMGFD-TNMEGGFLA 120 Query: 376 HKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIF 433 +RHL L++ +LE A L G +++AE LRLA SL +ITG + LL IF Sbjct: 121 RRRHLQALAEAANHLEQGKAQLLGAWAG-ELLAEELRLAQQSLSEITGEFTSDDLLGRIF 179 Query: 434 SKFCIGK 440 S FCIGK Sbjct: 180 SSFCIGK 186 >gi|23007906|ref|ZP_00049576.1| COG0486: Predicted GTPase [Magnetospirillum magnetotacticum MS-1] Length = 189 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 53/178 (29%), Positives = 100/178 (56%), Gaps = 12/178 (6%) Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLL--KEINSKKEISFPKNID--FIFIGT 327 +DTAG+R++ +E EG++R +DL L + + + + + ID + + Sbjct: 15 ADTAGLRDSHCEIESEGVRRAEARAAQSDLRLCVFDGALYPSLDAATREMIDDASLVVLN 74 Query: 328 KSDLYS-----TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH 382 K DL T +S+ GEG+++L+ +++++ ++F + + +RH Sbjct: 75 KRDLMGPDIPDTIMGRPVLALSAKGGEGMDDLVAALQAMVESRFAVGAAPVLTRERHRVA 134 Query: 383 LSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++ V L + + G+++ AE+LRLA+ SLG+ITG VDV+++LD+IF +FCIGK Sbjct: 135 VAEAVLAL---TRFDPGMGVEMAAEDLRLAARSLGRITGRVDVDEILDVIFHEFCIGK 189 >gi|62719467|gb|AAX93334.1| tRNA modification GTPase TtrmE [Lactobacillus sanfranciscensis] Length = 232 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 75/239 (31%), Positives = 127/239 (53%), Gaps = 36/239 (15%) Query: 231 GKSSLFN----ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEK 286 G+ ++ N +L ++ AIVTD+PGTTRDVL +++ G + + DTAGIRET+D VEK Sbjct: 1 GRPNVVNQVVESLLHEEKAIVTDVPGTTRDVLDEYVNVAGVPLHLIDTAGIRETEDKVEK 60 Query: 287 EGIKRTFLEVENADLILLLKEINSKKEIS--------FPKNIDFIFIGTKSDL-----YS 333 G+ R+ ++ ADL+LL+ +NS + ++ ++ + + K+DL Sbjct: 61 IGVDRSRAAIKKADLVLLV--LNSSEPLTDEDRQLLDLTRDSKRVILLNKTDLPMKLDIE 118 Query: 334 TYTEEY---DHLISSFTGEG----LEELINKI---KSILSNKFKKLPFSIPSHKRHLYHL 383 EY D + +S E LE+ I+++ K I S + + ++ RH+ L Sbjct: 119 KIKAEYGNSDMIKTSAMAENGTKTLEDTISQMFFTKGIASTQNSVM----VTNARHISLL 174 Query: 384 SQTVRYLEMASLNEKDCGL--DIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 Q + ++ ++ GL DI+ +L+ A LG ITG ++L+D +F +FCIGK Sbjct: 175 QQALDSVQTV-IDGIGAGLPVDIVQIDLQSAWDDLGAITGDSYDDELMDQLFDQFCIGK 232 >gi|20146198|dbj|BAB88986.1| thiopen and furan oxidase homolog [Bacillus cereus] Length = 141 Score = 80.9 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 51/142 (35%), Positives = 85/142 (59%), Gaps = 7/142 (4%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKK--KPFPRKASLRYFFGLD---G 58 E +TI A+ST AI+I+R+SG + I K K P ++ Y +D Sbjct: 2 EFDTIAAISTALGEGAIAIVRVSGDDAVEKVNRIFKGKDLTEVPSH-TIHYGHIVDLDTN 60 Query: 59 RILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAF 118 +++++ ++ + +P +FT E+ E + HGG+ VN +L+ L +RLA PGEF++RAF Sbjct: 61 QVIEEVMVSIMRAPRTFTRENIVEINCHGGLVSVNKVLQ-LILAQGVRLAEPGEFTKRAF 119 Query: 119 ENGKIDLLEAESLADLISSETE 140 NG+IDL +AE++ DLI ++T+ Sbjct: 120 LNGRIDLSQAEAVMDLIRAKTD 141 >gi|260890872|ref|ZP_05902135.1| tRNA modification GTPase TrmE [Leptotrichia hofstadii F0254] gi|260859425|gb|EEX73925.1| tRNA modification GTPase TrmE [Leptotrichia hofstadii F0254] Length = 162 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 40/81 (49%), Positives = 59/81 (72%) Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV 284 +G N GKS+L NAL ++ AIVT I GTTRDV+ ++++G + + DTAGIR+TDDIV Sbjct: 1 MGKPNVGKSTLLNALLHEERAIVTHIAGTTRDVIEEIINIKGIPLVLVDTAGIRKTDDIV 60 Query: 285 EKEGIKRTFLEVENADLILLL 305 E G++++ +E ADL+LL+ Sbjct: 61 ENIGVEKSKQFIEKADLVLLV 81 >gi|325283649|ref|YP_004256190.1| GTP-binding protein engA [Deinococcus proteolyticus MRP] gi|324315458|gb|ADY26573.1| GTP-binding protein engA [Deinococcus proteolyticus MRP] Length = 441 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 39/86 (45%), Positives = 55/86 (63%), Gaps = 1/86 (1%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I ++G N GKSSL NA+ + D AIV D+PGTTRD L ++ D G + DTAGIR+ Sbjct: 174 RISLIGRPNVGKSSLLNAITQSDRAIVADVPGTTRDSLDVEWDYGGQRFVLVDTAGIRKK 233 Query: 281 DDI-VEKEGIKRTFLEVENADLILLL 305 D +E I+R+ +E +DLI L+ Sbjct: 234 PDTAIEDYAIQRSQAAIERSDLIWLV 259 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 5/88 (5%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 +K+ I+G N GKSSLFN L + A+V D PG TRD + + + + DT G+ Sbjct: 2 HKVAIVGRPNVGKSSLFNRLIGRREAVVADFPGVTRDAKEEIMLYHNHRITLVDTGGLWS 61 Query: 280 TDDIVEKEGIKRTFLE--VENADLILLL 305 D E E + R E +E AD ++ + Sbjct: 62 GD---EWEAVIREKAEWALEGADAVIFV 86 >gi|315305259|ref|ZP_07875214.1| tRNA modification GTPase MnmE [Listeria ivanovii FSL F6-596] gi|313626371|gb|EFR95549.1| tRNA modification GTPase MnmE [Listeria ivanovii FSL F6-596] Length = 208 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 66/215 (30%), Positives = 111/215 (51%), Gaps = 31/215 (14%) Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309 I GTTRD++ +++ G +++ DTAGIRET+DIVEK G++R+ + +AD ILL+ +N Sbjct: 1 IAGTTRDIIEEYVNVRGVPLRLIDTAGIRETEDIVEKIGVERSRKALADADFILLV--LN 58 Query: 310 SKKEISFPKNIDF--------IFIGTKSDLYSTYT-------EEYDHLISS--FTGEGLE 352 +E++ F + + K+DL + + ++S+ EGLE Sbjct: 59 QNEELTVEDEALFEAAAGHHYVVVLNKTDLETKLDINRVRKLAGNNPIVSTSLVNDEGLE 118 Query: 353 ELINKIKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGL------DII 405 L IK++ + + S+ RH+ L Q + SLN G+ DI+ Sbjct: 119 ALEEAIKTLFFAGDIDAGDATYVSNVRHIALLHQA-----LESLNAVTTGIQLGMPVDIV 173 Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 ++ A LG+ITG ++LLD +F++FC+GK Sbjct: 174 QIDMTRAWDLLGEITGDSVQDELLDQLFNQFCLGK 208 >gi|238602569|ref|XP_002395715.1| hypothetical protein MPER_04185 [Moniliophthora perniciosa FA553] gi|215466926|gb|EEB96645.1| hypothetical protein MPER_04185 [Moniliophthora perniciosa FA553] Length = 112 Score = 76.3 bits (186), Expect = 9e-12, Method: Composition-based stats. Identities = 36/72 (50%), Positives = 53/72 (73%) Query: 232 KSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR 291 K+ L N LA+++ AIVT IPGTTRD+L + LD+ G V ++DTAG+R+T+D+VE GI+R Sbjct: 4 KAVLLNFLAQREAAIVTSIPGTTRDILEVSLDIGGLPVIVADTAGLRQTEDVVENIGIER 63 Query: 292 TFLEVENADLIL 303 V+ +D+ L Sbjct: 64 ARNRVQGSDISL 75 >gi|61679426|pdb|1XZP|B Chain B, Structure Of The Gtp-Binding Protein Trme From Thermotoga Maritima Length = 150 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 47/119 (39%), Positives = 74/119 (62%), Gaps = 3/119 (2%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCE-FICKKKKPFPRKASLRYFFGLDGRILDKG 64 +TI AV+T AI+I+RLSGP +++ + + + K PRKA + + +G +D+ Sbjct: 34 DTIVAVATPPGKGAIAILRLSGPDSWKIVQKHLRTRSKIVPRKA-IHGWIHENGEDVDEV 92 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKI 123 +++ + SP+S+TGED E HGG VV +L+ K R+A PGEF++RAF NGK+ Sbjct: 93 VVVFYKSPKSYTGEDMVEVMCHGGPLVVKKLLDLFLKS-GARMAEPGEFTKRAFLNGKM 150 >gi|284097722|ref|ZP_06385732.1| tRNA modification GTPase trmE [Candidatus Poribacteria sp. WGA-A3] gi|283830768|gb|EFC34868.1| tRNA modification GTPase trmE [Candidatus Poribacteria sp. WGA-A3] Length = 173 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 74/163 (45%), Gaps = 26/163 (15%) Query: 2 NHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKK------------------- 42 N +TI A++T I I+R+SG +V + + + Sbjct: 3 NSVDDTICAIATPVGEGGIGIVRVSGAQAIEVAAHVVRPRNRQSLQELENHRLYLSDVLY 62 Query: 43 ---PFPR---KASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGIL 96 P P + G +D+ L+++ P S+TGED E HGG ++ Sbjct: 63 PESPLPPGEGQGEGPSQAVEQGTAIDEALVVIMRKPRSYTGEDVVEIQTHGGAWILQATC 122 Query: 97 EELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSET 139 L + RLA+PGEF++RAF NG++DL +AE++ D I + T Sbjct: 123 HGLIRH-GARLAHPGEFTKRAFLNGRLDLTQAEAVLDTIQATT 164 >gi|61679428|pdb|1XZQ|B Chain B, Structure Of The Gtp-Binding Protein Trme From Thermotoga Maritima Complexed With 5-Formyl-Thf Length = 149 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 47/118 (39%), Positives = 73/118 (61%), Gaps = 3/118 (2%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCE-FICKKKKPFPRKASLRYFFGLDGRILDKG 64 +TI AV+T AI+I+RLSGP +++ + + + K PRKA + + +G +D+ Sbjct: 34 DTIVAVATPPGKGAIAILRLSGPDSWKIVQKHLRTRSKIVPRKA-IHGWIHENGEDVDEV 92 Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 +++ + SP+S+TGED E HGG VV +L+ K R+A PGEF++RAF NGK Sbjct: 93 VVVFYKSPKSYTGEDMVEVMCHGGPLVVKKLLDLFLKS-GARMAEPGEFTKRAFLNGK 149 >gi|15807299|ref|NP_296029.1| GTP-binding protein EngA [Deinococcus radiodurans R1] gi|26006746|sp|Q9RS19|DER_DEIRA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|6460115|gb|AAF11852.1|AE002062_5 conserved hypothetical protein [Deinococcus radiodurans R1] Length = 438 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 38/86 (44%), Positives = 55/86 (63%), Gaps = 1/86 (1%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I ++G N GKSSL NA+ + D AIV D+PGTTRD L ++ D G + DTAGIR+ Sbjct: 174 RISLIGRPNVGKSSLLNAITQSDRAIVADLPGTTRDSLDVEWDYGGQRFVLVDTAGIRKK 233 Query: 281 DDI-VEKEGIKRTFLEVENADLILLL 305 D +E I+R+ +E +D+I L+ Sbjct: 234 PDTAIEDFAIQRSQAAIERSDVIWLV 259 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 35/63 (55%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 +K+ I+G N GKSSLFN L + A+V D PG TRD + + + + DT G+ Sbjct: 2 HKVAIVGRPNVGKSSLFNRLIGRREAVVADFPGVTRDAKEGLMLYHNHRITLIDTGGLWS 61 Query: 280 TDD 282 D+ Sbjct: 62 GDE 64 >gi|116491039|ref|YP_810583.1| GTPase [Oenococcus oeni PSU-1] gi|290890519|ref|ZP_06553594.1| hypothetical protein AWRIB429_0984 [Oenococcus oeni AWRIB429] gi|116091764|gb|ABJ56918.1| Predicted GTPase [Oenococcus oeni PSU-1] gi|290479915|gb|EFD88564.1| hypothetical protein AWRIB429_0984 [Oenococcus oeni AWRIB429] Length = 442 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 40/89 (44%), Positives = 61/89 (68%), Gaps = 4/89 (4%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRE 279 KI I+G N GKSS+FN+L K++ +IV+DI GTTRD + D +G + ISDTAGIR+ Sbjct: 182 KIAIIGRPNVGKSSIFNSLIKRNRSIVSDIQGTTRDTVDSQFEDNQGNVFTISDTAGIRK 241 Query: 280 TDDIV---EKEGIKRTFLEVENADLILLL 305 + ++ EK + R + +E+AD+IL++ Sbjct: 242 SGKVIESTEKYAVLRAQMAIESADVILVV 270 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/86 (38%), Positives = 47/86 (54%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 Y I I+G N GKS+LFN + AIV DI G TRD L + G + DT GI Sbjct: 5 YTIAIVGRPNVGKSTLFNRIVGTRKAIVNDISGVTRDRLYEKAEWNGSEFSVIDTGGISA 64 Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305 ++D+ KE ++ L ++ AD I+ + Sbjct: 65 SNDVFIKEIKEQAELAIKEADAIIFV 90 >gi|115372271|ref|ZP_01459581.1| thiophene and furan oxidation protein ThdF [Stigmatella aurantiaca DW4/3-1] gi|115370736|gb|EAU69661.1| thiophene and furan oxidation protein ThdF [Stigmatella aurantiaca DW4/3-1] Length = 164 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 49/158 (31%), Positives = 89/158 (56%), Gaps = 3/158 (1%) Query: 82 EFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEM 141 E HG ++ +L + + +R A PGEF+RRAF G+IDL AE++ADL+++++E Sbjct: 3 ELQAHGSPRLLQLLLARVLEDERVRPARPGEFTRRAFLQGRIDLTRAEAVADLVAADSEA 62 Query: 142 QRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKN 201 R + G++G LS + L + + +E L+F +E + + + + L++ Sbjct: 63 AVRAAAAGLAGALSHRVRALEEPLRALHADLEGVLNFPDEAEGADEGAG---PRVAALRS 119 Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 + + +S+ G ++R G ++ + G NAGKS+LFN L Sbjct: 120 EAEALLSEAGRGRLVRRGARVALYGPVNAGKSTLFNRL 157 >gi|226357377|ref|YP_002787117.1| GTP-binding protein EngA [Deinococcus deserti VCD115] gi|259645869|sp|C1D094|DER_DEIDV RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|226319367|gb|ACO47363.1| putative GTP-binding protein [Deinococcus deserti VCD115] Length = 441 Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 38/86 (44%), Positives = 53/86 (61%), Gaps = 1/86 (1%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I ++G N GKSSL NA+ D AIV D PGTTRD L ++ D G + DTAGIR+ Sbjct: 174 RISLIGRPNVGKSSLLNAITNTDRAIVADQPGTTRDSLDVEWDFGGQRFVLVDTAGIRKK 233 Query: 281 DDI-VEKEGIKRTFLEVENADLILLL 305 D +E I+R+ ++ +DLI L+ Sbjct: 234 PDTAIEDYAIQRSQAAIQRSDLIWLV 259 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 35/63 (55%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 +K+ I+G N GKSSLFN L + A+V D PG TRD + + + + DT G+ Sbjct: 2 HKVAIVGRPNVGKSSLFNRLIGRREAVVADFPGVTRDAKEGLMLYHNHRITLVDTGGLWS 61 Query: 280 TDD 282 D+ Sbjct: 62 GDE 64 >gi|297565398|ref|YP_003684370.1| ribosome-associated GTPase EngA [Meiothermus silvanus DSM 9946] gi|296849847|gb|ADH62862.1| ribosome-associated GTPase EngA [Meiothermus silvanus DSM 9946] Length = 437 Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 38/86 (44%), Positives = 57/86 (66%), Gaps = 1/86 (1%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE- 279 KI I+G NAGKSSL NA+ ++ IV++ PGTTRD + ++ D G L ++ DTAGIR+ Sbjct: 176 KIAIVGRPNAGKSSLLNAILGEERVIVSEEPGTTRDSIDVEFDYGGTLFQLVDTAGIRKR 235 Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305 + +VE+ I R +E AD++ L+ Sbjct: 236 PETLVEELAIARAHKSIEEADIVFLV 261 Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 82/162 (50%), Gaps = 22/162 (13%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 YK+VI+G N GKSSLFN L K A+V D PG TRD+ ++ E K+ DT G+ Sbjct: 2 YKVVIVGRPNVGKSSLFNRLLGKRHAVVADQPGVTRDLKEATVESERGRFKLVDTGGLW- 60 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP----------KNIDFIFIGTKS 329 + D+ E++ ++ +E+ADL+L ++ + +IS K+ + + + TK Sbjct: 61 SGDVWEQKIKEKVEAALEDADLVLFT--VDGRADISPADLEVADFLRRKHSNVLLVATKV 118 Query: 330 D--LYSTYTEEYDHL-------ISSFTGEGLEELINKIKSIL 362 D + Y + L SS GL+EL +KI S L Sbjct: 119 DDPKHENYLGDLWALGFGEPVPTSSSHARGLDELEDKIWSKL 160 >gi|320451137|ref|YP_004203233.1| ribosome-associated GTPase EngA [Thermus scotoductus SA-01] gi|320151306|gb|ADW22684.1| ribosome-associated GTPase EngA [Thermus scotoductus SA-01] Length = 432 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 37/88 (42%), Positives = 57/88 (64%), Gaps = 1/88 (1%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G K+ I+G NAGKSSL NA+ ++ IV++ PGTTRD + + G + DTAGIR Sbjct: 173 GIKLAIVGRPNAGKSSLLNAILGEERVIVSEEPGTTRDAIDVHFTFRGQPFVLVDTAGIR 232 Query: 279 E-TDDIVEKEGIKRTFLEVENADLILLL 305 + + +VE+ I+R+ +E AD++LL+ Sbjct: 233 KRPESLVEELAIRRSLKAIEEADVVLLV 260 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 52/170 (30%), Positives = 81/170 (47%), Gaps = 29/170 (17%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 +K+VI+G N GKSSLFN L K A+V D+PG TRD+ ++ E + DT G+ Sbjct: 2 HKVVIVGRPNVGKSSLFNRLLGKRSAVVADVPGVTRDLKEGVVESEKGRFLLVDTGGLW- 60 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS----------FPKNIDFIFIGTKS 329 + D EK+ ++ +E+A+++L ++ + E++ K I + TK Sbjct: 61 SGDRWEKKIQEKVDQALEDAEVVLF--AVDGRSELTQADYEVAEYLRKKGRPVILVATKV 118 Query: 330 D-------LYSTYTEEYDHLI--SSFTGEGLEELINKIKSILSNKFKKLP 370 D L Y + I SS GLEEL+ I ++KLP Sbjct: 119 DDPKHEHYLGPLYALGFGDPIPTSSEHARGLEELLEAI-------WEKLP 161 >gi|319941508|ref|ZP_08015835.1| GTP-binding protein engA [Sutterella wadsworthensis 3_1_45B] gi|319804982|gb|EFW01821.1| GTP-binding protein engA [Sutterella wadsworthensis 3_1_45B] Length = 451 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 50/179 (27%), Positives = 86/179 (48%), Gaps = 31/179 (17%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ + G NAGKS+L NAL ++ I D+PGTTRD + ID + +G ++ DTAG+R+ Sbjct: 184 KVTLAGRPNAGKSTLINALVGEERVIAFDMPGTTRDAIKIDFEYDGRPYELVDTAGLRKK 243 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS----------FPKNIDFIFIGT 327 + VEK + +T +E+A++++L+ +++K+ +S + Sbjct: 244 GRVFEAVEKFSVVKTLQAIEDANVVILV--VDAKEGVSEGDAHIAGYVLEAGRALVVAVN 301 Query: 328 KSDLYSTYTEEYDHL----------------ISSFTGEGLEELINKIKSILSNKFKKLP 370 K DL +Y E +L IS+ GL L+ + + + KLP Sbjct: 302 KWDLLDSYERERFNLDLERKLHFLRWARMIRISALKRNGLNHLMRAVDEAHAAAYAKLP 360 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 72/171 (42%), Gaps = 28/171 (16%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+ FN L + AIV D PG TRD + + DT G Sbjct: 5 IALVGRPNVGKSTFFNRLTRSRDAIVADFPGLTRDRQYGQGRVGPGPYIVVDTGGF---- 60 Query: 282 DIVEKEGIKRTF-----LEVENADLILLLKEIN---SKKEISFPKNID------FIFIGT 327 + V EGI + L +E AD++L L + + ++I +++ + + Sbjct: 61 EPVRTEGIVQAMAGQAELAIEEADVVLFLTDARAGLTPQDIRIAQHLRRADRPVVLLVNK 120 Query: 328 KSDLYSTYTEEY-------DHLISSFTGEGLEELINKIKSILSNKFKKLPF 371 L T E+ HL+S G+G+ + ++ S L F PF Sbjct: 121 AEGLTETAKAEFYELGLGEPHLVSGAHGQGVRDALDLAFSCLPEDF---PF 168 >gi|291320725|ref|YP_003515990.1| GTP binding protein EngA [Mycoplasma agalactiae] gi|290753061|emb|CBH41037.1| GTP binding protein engA [Mycoplasma agalactiae] Length = 436 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 41/99 (41%), Positives = 67/99 (67%), Gaps = 5/99 (5%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-- 277 +K+ I+G N+GKSSL NA+ ++ +IV+DI GTTRD + ++L G+ ++I DTAGI Sbjct: 172 FKLSIIGQPNSGKSSLLNAITHENRSIVSDIAGTTRDSVKSVVELRGHKIEIIDTAGITR 231 Query: 278 -RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + DDIVE +KR ++ +DL ++L I+S +E++ Sbjct: 232 KSKIDDIVEHLALKRAMSSLDESDLSIVL--IDSTRELA 268 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 44/84 (52%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS+LFN L K +I D PG TRD L G + + DT GI+ Sbjct: 6 IAIIGKPNVGKSTLFNRLVGKRSSITFDRPGVTRDRLYESFTWNGKEINVIDTGGIQIEK 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + + + + +E A++++ + Sbjct: 66 KDFQDQILIQAKIAIEEANVVIFI 89 >gi|291279462|ref|YP_003496297.1| small GTP-binding protein [Deferribacter desulfuricans SSM1] gi|290754164|dbj|BAI80541.1| small GTP-binding protein [Deferribacter desulfuricans SSM1] Length = 438 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 49/146 (33%), Positives = 77/146 (52%), Gaps = 17/146 (11%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 + + I+G N GKS+LFN LA K +AIV D+PG TRD L + EG KI DT G Sbjct: 2 FTVGIIGRPNVGKSTLFNRLAGKRIAIVDDMPGVTRDRLEYIAEWEGKKFKIVDTCGYDL 61 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKK----------EISFPKNIDFIFIGTKS 329 +++++KE IK+ + ++ AD +LL +++K+ I + FI + K Sbjct: 62 REELLKKEMIKQFYASLDEADFFVLL--VDAKEGLHPLDEMVCNILREREKKFIVVANKV 119 Query: 330 DLYSTYTEEYDHLISSFTGEGLEELI 355 D E+ ++ F G+EE+I Sbjct: 120 D-----NEKLQSFVADFYQLGVEEII 140 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 4/85 (4%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+V++G N GKSSL N+ + IVT IPGTTRD + + + DTAGIR+ Sbjct: 175 KVVVVGRPNVGKSSLINSWLGDERLIVTPIPGTTRDSVDTYFEYNSKKYTLIDTAGIRKK 234 Query: 281 D----DIVEKEGIKRTFLEVENADL 301 D +EK G R++ + AD+ Sbjct: 235 SVMFKDKIEKYGFYRSYDAIRRADI 259 >gi|291613885|ref|YP_003524042.1| ribosome-associated GTPase EngA [Sideroxydans lithotrophicus ES-1] gi|291583997|gb|ADE11655.1| ribosome-associated GTPase EngA [Sideroxydans lithotrophicus ES-1] Length = 465 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 50/179 (27%), Positives = 87/179 (48%), Gaps = 31/179 (17%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 K+ I+G N GKS+L NA+ ++ I D PGTTRD + ID + G I DTAGIR Sbjct: 178 KLAIVGRPNVGKSTLVNAILGEERVIAFDQPGTTRDSIYIDFERAGRQYTIIDTAGIRRR 237 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN--IDFIFIGTKS------ 329 + D+ +EK + +T +E+A++++L+ ++++ +I+ DF+ ++ Sbjct: 238 GKIDEAIEKFSVVKTLQAIEDANVVVLV--VDARDQITEQDAHLADFVLQAGRALVLAVN 295 Query: 330 -----DLYSTYTEEYD-------------HLISSFTGEGLEELINKIKSILSNKFKKLP 370 D Y T + D H IS+ G G++ L+ + + K+P Sbjct: 296 KWDGLDEYKRDTVKRDIERKLHFLSFAKHHFISALNGTGVDALLKSVNQAYTAAMTKMP 354 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 9/89 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 +V++G N GKS+LFN L + A+V D+PG TRD + + DT G+ Sbjct: 5 LVLVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGRGRVGERPYLVVDTGGL---- 60 Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305 + V KEGI K+T V+ ADL+L + Sbjct: 61 EPVAKEGIMHEMAKQTRQAVDEADLVLFI 89 >gi|148377986|ref|YP_001256862.1| GTP-binding protein EngA [Mycoplasma agalactiae PG2] gi|238686669|sp|A5IZG5|DER_MYCAP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|148292032|emb|CAL59424.1| GTP binding protein engA [Mycoplasma agalactiae PG2] Length = 436 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 41/99 (41%), Positives = 66/99 (66%), Gaps = 5/99 (5%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-- 277 +K+ I+G N+GKSSL NA+ ++ +IV+DI GTTRD + ++L G+ ++I DTAGI Sbjct: 172 FKLSIIGQPNSGKSSLLNAITHENRSIVSDIAGTTRDGVKSVVELRGHKIEIIDTAGITR 231 Query: 278 -RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + DD VE +KR ++ +DL ++L INS +E++ Sbjct: 232 KSKIDDTVEHLALKRAMSSLDESDLSIVL--INSTRELA 268 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 44/84 (52%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS+LFN L K +I D PG TRD L G + + DT GI+ Sbjct: 6 IAIIGKPNVGKSTLFNRLVGKRSSITFDRPGVTRDRLYESFTWNGKEINVIDTGGIQIEK 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + + + + +E A++++ + Sbjct: 66 KDFQDQILIQAKIAIEEANVVIFI 89 >gi|218294927|ref|ZP_03495781.1| small GTP-binding protein [Thermus aquaticus Y51MC23] gi|218244835|gb|EED11359.1| small GTP-binding protein [Thermus aquaticus Y51MC23] Length = 432 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 37/88 (42%), Positives = 59/88 (67%), Gaps = 1/88 (1%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G ++ I+G NAGKSSL NA+ ++ IV++ PGTTRD + +++ G + DTAGIR Sbjct: 173 GIRLAIVGRPNAGKSSLLNAILGEERVIVSEEPGTTRDTIDVEVYRNGNRFVLLDTAGIR 232 Query: 279 E-TDDIVEKEGIKRTFLEVENADLILLL 305 + + IVE+ I+R+ +E AD++LL+ Sbjct: 233 KRPESIVEELAIRRSLRAIEEADVVLLV 260 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 33/85 (38%), Positives = 49/85 (57%), Gaps = 1/85 (1%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 +K+VI+G N GKSSLFN L K A+V D PG TRD+ ++ E + DT G+ Sbjct: 2 HKVVIVGRPNVGKSSLFNRLLGKRSAVVADEPGVTRDLKEGVVETEQGRFLLVDTGGL-W 60 Query: 280 TDDIVEKEGIKRTFLEVENADLILL 304 + D EK+ ++ +E A+L+L Sbjct: 61 SGDRWEKKIQEKVDRALEEAELVLF 85 >gi|294675553|ref|YP_003576169.1| ribosome-associated GTPase EngA [Prevotella ruminicola 23] gi|294472941|gb|ADE82330.1| ribosome-associated GTPase EngA [Prevotella ruminicola 23] Length = 437 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 58/169 (34%), Positives = 83/169 (49%), Gaps = 22/169 (13%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277 G + I+G N GKS+LFN L K AIV+D GTTRD + G + DT G + Sbjct: 2 GNLVAIVGRPNVGKSTLFNRLTKTRHAIVSDEAGTTRDRQYGKCEWNGREFSVVDTGGWV 61 Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKS 329 +DD+ E+E K+ + E ADL+L L +IN+ +I + I + K+ Sbjct: 62 VNSDDVFEEEIRKQVIIATEEADLVLFLCDINNGVTGWDMDVAQILRRAKLPVILVANKA 121 Query: 330 ----DLYSTYTEEYDHL-------ISSFTGEGLEELINKIKSILSNKFK 367 DLY Y E+ L IS+ TG G +L++K+ IL K K Sbjct: 122 DDGKDLYDQY--EFYKLGLGDPFPISAATGSGTGDLLDKVLEILPEKPK 168 Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G NAGKSS+ NA +D IVTDI GTTRD + D G+ + DTAGIR Sbjct: 177 RFAVVGRPNAGKSSIINAFIGEDRNIVTDIAGTTRDSIYTRYDKFGFDFYLVDTAGIRRK 236 Query: 281 DDIVEK---EGIKRTFLEVENADLILLL 305 + + E + R+ +EN+D+ +L+ Sbjct: 237 NKVTEDLEFYSVMRSIRAIENSDVCVLM 264 >gi|291297034|ref|YP_003508432.1| small GTP-binding protein [Meiothermus ruber DSM 1279] gi|290471993|gb|ADD29412.1| small GTP-binding protein [Meiothermus ruber DSM 1279] Length = 453 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 36/86 (41%), Positives = 57/86 (66%), Gaps = 1/86 (1%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G NAGKSSL NA+ ++ IV++IPGTTRD + ++ D G + DTAGIR+ Sbjct: 187 RLAIVGRPNAGKSSLLNAILGEERVIVSEIPGTTRDSIDVEFDYGGSRFLLVDTAGIRKR 246 Query: 281 DDI-VEKEGIKRTFLEVENADLILLL 305 + VE++ I R + +AD++LL+ Sbjct: 247 PETGVEEQAIVRAHQAIRDADVVLLV 272 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/97 (35%), Positives = 52/97 (53%), Gaps = 13/97 (13%) Query: 220 YKIVILGHSNAGKSSLFNAL------------AKKDVAIVTDIPGTTRDVLTIDLDLEGY 267 Y++VI+G N GKSSLFN L A A+V D+PG TRD+ ++ E Sbjct: 2 YRVVIVGRPNVGKSSLFNKLLGLRAAPEKAAKAGSQFAVVADVPGVTRDLKEGVVESEQG 61 Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL 304 K+ DT G+ + D+ EK+ ++ + +ADL+L Sbjct: 62 RFKLVDTGGL-WSGDVWEKKIKQKVERAIADADLVLF 97 >gi|307299325|ref|ZP_07579126.1| ribosome-associated GTPase EngA [Thermotogales bacterium mesG1.Ag.4.2] gi|306915121|gb|EFN45507.1| ribosome-associated GTPase EngA [Thermotogales bacterium mesG1.Ag.4.2] Length = 441 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 54/183 (29%), Positives = 91/183 (49%), Gaps = 32/183 (17%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI I+G NAGKSS+FN + ++VT++ GTTRD + ++++G + DTAGIR+ Sbjct: 182 KIAIVGKPNAGKSSIFNWIVGSPRSLVTEVSGTTRDTVDETVEVDGIPITFIDTAGIRKK 241 Query: 281 DDI----VEKEGIKRTFLEVENADLILL-----------------LKEINSKKEISFPKN 319 + VE + R +E +D++++ L E N K I+ Sbjct: 242 SKVKVMNVEYYSVMRAIDALERSDIMVMVIDSADGVGNQDQRIAGLAEKNGKATIAVFNK 301 Query: 320 IDFIFIGTKSDLYSTYTE-----EYDHLI--SSFTGEGLEELINKIKSILSNKFKKLPFS 372 D + + L T+ + +Y +I S+ TGEG++ELI+ IK + KK+ Sbjct: 302 CDLVDERRRKALLRTFKQDLYFIDYSPVIFTSTLTGEGMDELIDSIKLV----SKKIDLR 357 Query: 373 IPS 375 +P+ Sbjct: 358 LPT 360 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 ++I+G N GKS+LFN L AIV D+PG TRD ++ + ++ DT G+ E Sbjct: 4 VLIIGRPNVGKSTLFNRLVGGRRAIVDDLPGVTRDFTVGRVNWQQRTFQLVDTCGLFENP 63 Query: 282 DIVEKEGIKRTFLE-VENADLILLL 305 + + +E +K LE + DLIL + Sbjct: 64 ENIVEEKMKEVTLELLSEGDLILFV 88 >gi|320159766|ref|YP_004172990.1| GTP-binding protein EngA [Anaerolinea thermophila UNI-1] gi|319993619|dbj|BAJ62390.1| GTP-binding protein EngA [Anaerolinea thermophila UNI-1] Length = 455 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 39/88 (44%), Positives = 54/88 (61%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI I+G NAGKSSL N L ++ AIV+ IPGTTRD + ++ G + + DTAGIR Sbjct: 196 KIAIVGKPNAGKSSLLNRLVGEERAIVSPIPGTTRDAVDTRIEYNGVPITLIDTAGIRRR 255 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 I VEK + R+ +E +D+ LL+ Sbjct: 256 GKIEPGVEKYSVLRSLRAIERSDVALLM 283 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 39/95 (41%), Positives = 53/95 (55%), Gaps = 8/95 (8%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN LA + +AIV DIPGTTRD L + G I DT GI D Sbjct: 6 VALVGRPNVGKSTLFNRLAGEPLAIVDDIPGTTRDRLFATAEWSGVEFDIVDTGGI---D 62 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316 + G R L + +A+ I KEI S+ E++ Sbjct: 63 PSAARAG--REPLSIGSAEFI---KEIRSQAELAI 92 >gi|170718421|ref|YP_001783641.1| GTP-binding protein EngA [Haemophilus somnus 2336] gi|168826550|gb|ACA31921.1| small GTP-binding protein [Haemophilus somnus 2336] Length = 511 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 64/230 (27%), Positives = 105/230 (45%), Gaps = 48/230 (20%) Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232 E D +F+ EED+Q +L++ L + + S KI I+G N GK Sbjct: 192 EKDFNFNSEEDIQ------LLDEALVEEQEESED-----------KNIKIAIVGRPNVGK 234 Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGI 289 S+L N + +D +V D+PGTTRD + I ++ +G + DTAG+R+ + VEK + Sbjct: 235 STLTNRILGEDRVVVYDLPGTTRDSIYIPMERDGQQYTLIDTAGVRKRGKVHLTVEKFSV 294 Query: 290 KRTFLEVENADLILLLKEINSKKEIS--------FPKNIDFIFI-------GTKSDLYST 334 +T +++A++ILL I++++ IS F N + G D+ Sbjct: 295 IKTLQAIQDANVILLT--IDARQGISDQDLSLLGFILNTGRSLVIVVNKWDGLNQDIKDQ 352 Query: 335 YTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373 E D H IS+ G G+ L + IK + KK+ S+ Sbjct: 353 VKSELDRRLDFIDFARVHFISALHGSGVGNLFDSIKEAYACATKKMTTSL 402 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/163 (26%), Positives = 79/163 (48%), Gaps = 18/163 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD GY + DT GI T+ Sbjct: 6 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAHFNGYDFIVIDTGGIDGTE 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL---------KEINSKKEISFPKNIDFIFIGTKSDL- 331 + VE++ +++ L +E AD++L L ++ + + +N + + K+D Sbjct: 66 EGVEEKMAEQSLLAIEEADIVLFLVDARAGLTSADVGIAQYLRKRQNKTTVLVANKTDGI 125 Query: 332 -YSTYTEEYDHL-------ISSFTGEGLEELINKIKSILSNKF 366 ++ E+ L I++ G G+ L+ K+ +++K Sbjct: 126 DADSHCAEFYQLGLGEIEKIAASQGRGISALMEKVLPPVADKL 168 >gi|218680771|ref|ZP_03528668.1| tRNA modification GTPase TrmE [Rhizobium etli CIAT 894] Length = 77 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 37/78 (47%), Positives = 54/78 (69%), Gaps = 1/78 (1%) Query: 363 SNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGC 422 + +F L +IPS RH L++ + L+ A++++ D L++ E LR+A+ LGKITG Sbjct: 1 AERFGALSMAIPSRTRHKDSLAKCLLALD-AAISQIDVNLELRTEQLRVAAEFLGKITGR 59 Query: 423 VDVEQLLDIIFSKFCIGK 440 VDVEQLL +IFS+FCIGK Sbjct: 60 VDVEQLLGVIFSEFCIGK 77 >gi|113461468|ref|YP_719537.1| GTP-binding protein EngA [Haemophilus somnus 129PT] gi|112823511|gb|ABI25600.1| GTP-binding protein [Haemophilus somnus 129PT] Length = 511 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 64/230 (27%), Positives = 105/230 (45%), Gaps = 48/230 (20%) Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232 E D +F+ EED+Q +L++ L + + S KI I+G N GK Sbjct: 192 EKDFNFNSEEDIQ------LLDEALVEEQEESED-----------KNIKIAIVGRPNVGK 234 Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGI 289 S+L N + +D +V D+PGTTRD + I ++ +G + DTAG+R+ + VEK + Sbjct: 235 STLTNRILGEDRVVVYDLPGTTRDSIYIPMERDGQQYTLIDTAGVRKRGKVHLTVEKFSV 294 Query: 290 KRTFLEVENADLILLLKEINSKKEIS--------FPKNIDFIFI-------GTKSDLYST 334 +T +++A++ILL I++++ IS F N + G D+ Sbjct: 295 IKTLQAIQDANVILLT--IDARQGISDQDLSLLGFILNTGRSLVIVVNKWDGLNQDIKDQ 352 Query: 335 YTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373 E D H IS+ G G+ L + IK + KK+ S+ Sbjct: 353 VKSELDRRLDFIDFARVHFISALHGSGVGNLFDSIKEAYACATKKMTTSL 402 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 49/84 (58%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD GY + DT GI T+ Sbjct: 6 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAHFNGYDFIVIDTGGIDGTE 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE++ +++ L +E AD++L L Sbjct: 66 EGVEEKMAEQSLLAIEEADIVLFL 89 >gi|293604545|ref|ZP_06686950.1| GTP-binding protein EngA [Achromobacter piechaudii ATCC 43553] gi|292817126|gb|EFF76202.1| GTP-binding protein EngA [Achromobacter piechaudii ATCC 43553] Length = 454 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 54/189 (28%), Positives = 86/189 (45%), Gaps = 33/189 (17%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N L ++ I D+PGTTRD + ID D +G + DTAG+R+ Sbjct: 190 KLAIVGRPNVGKSTLINTLMGEERVIAFDLPGTTRDAIEIDFDRDGRRYTLIDTAGLRKR 249 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTE 337 + VEK + +T +E ++++LL+ +++ EIS F+ Sbjct: 250 GKVFEAVEKFSVIKTLQAIEASNVVLLM--LDAHTEISEQDAHIAGFVLETGRAVVVAIN 307 Query: 338 EYD--------------------------HLISSFTGEGLEELINKIKSILSNKFKKLPF 371 ++D H IS+ G+G++ L+ I S + F KL Sbjct: 308 KWDGLDGEEKERIEREFQRKLRFLSFARVHTISALRGQGIKPLLKSINSAHAAAFAKL-- 365 Query: 372 SIPSHKRHL 380 S P R L Sbjct: 366 STPKLTREL 374 Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust. Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 17/93 (18%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS----DTAGI 277 + ++G N GKS+LFN L + A+V D G TRD EG + +I DT G Sbjct: 7 VALVGRPNVGKSTLFNRLTRSRAALVADFSGLTRDRHY----GEGRVGEIPFIAIDTGGF 62 Query: 278 RETDDIVEKEGI-----KRTFLEVENADLILLL 305 + V K+GI ++T + AD+++ L Sbjct: 63 ----EPVAKDGILLEMARQTRQAIAEADVVVFL 91 >gi|94986202|ref|YP_605566.1| GTP-binding protein EngA [Deinococcus geothermalis DSM 11300] gi|166198711|sp|Q1IWI7|DER_DEIGD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|94556483|gb|ABF46397.1| Small GTP-binding protein domain [Deinococcus geothermalis DSM 11300] Length = 441 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 36/86 (41%), Positives = 55/86 (63%), Gaps = 1/86 (1%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I ++G N GKSSL NA+ + + AIV D PGTTRD L ++ + G + DTAGIR+ Sbjct: 174 RISLIGRPNVGKSSLLNAITQSERAIVADQPGTTRDSLDVEWNYGGQRFVLVDTAGIRKK 233 Query: 281 DDI-VEKEGIKRTFLEVENADLILLL 305 D +E+ I+R+ +E +D+I L+ Sbjct: 234 PDTAIEEYAIQRSEAAIERSDIIWLV 259 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 34/62 (54%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKSSLFN L + A+V D PG TRD + + + + DT G+ Sbjct: 3 KVAIVGRPNVGKSSLFNRLVGRREAVVADFPGVTRDAKEGLMLYHNHRIVLVDTGGLWSG 62 Query: 281 DD 282 D+ Sbjct: 63 DE 64 >gi|313678873|ref|YP_004056613.1| ribosome-associated GTPase EngA [Mycoplasma bovis PG45] gi|312950564|gb|ADR25159.1| ribosome-associated GTPase EngA [Mycoplasma bovis PG45] Length = 436 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 40/99 (40%), Positives = 66/99 (66%), Gaps = 5/99 (5%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 +K+ I+G N+GKSSL NA+ ++ +IV+DI GTTRD + ++L G+ ++I DTAGI + Sbjct: 172 FKLSIIGQPNSGKSSLLNAITHENRSIVSDIAGTTRDSVKSVVELRGHKIEIIDTAGITK 231 Query: 280 T---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 DD VE +KR ++ +DL ++L I+S +E++ Sbjct: 232 KSKIDDTVEHLALKRAMSSLDESDLSIVL--IDSTRELA 268 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 44/84 (52%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS+LFN L K +I D PG TRD L G + + DT GI+ Sbjct: 6 IAIIGKPNVGKSTLFNRLVGKRSSITFDRPGVTRDRLYESFMWNGKEINVIDTGGIQIEK 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + + + + ++ A++++ + Sbjct: 66 KDFQDQILIQAKIAIQEANVVIFI 89 >gi|52424789|ref|YP_087926.1| GTP-binding protein EngA [Mannheimia succiniciproducens MBEL55E] gi|52306841|gb|AAU37341.1| unknown [Mannheimia succiniciproducens MBEL55E] Length = 507 Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 54/180 (30%), Positives = 90/180 (50%), Gaps = 27/180 (15%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI I+G N GKS+L N + +D +V D+PGTTRD + I ++ +G I DTAG+R+ Sbjct: 220 KIAIVGRPNVGKSTLTNRILGEDRVVVYDLPGTTRDSVYIPMERDGQQYTIIDTAGVRKR 279 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI-----DFIFIGTKS 329 + VEK + +T +++A+++LL +E S +++S I + + K Sbjct: 280 GKVHLSVEKFSVIKTLQAIQDANVVLLTVDAREGISDQDLSLLGFILNAGRSLVIVVNKW 339 Query: 330 DLYSTYTE-----EYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373 D S YT+ E D H IS+ G G+ L + ++ + KK+ S+ Sbjct: 340 DGLSQYTKDQVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSVQEAYACATKKMTTSM 399 Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 82/164 (50%), Gaps = 18/164 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++ GY + DT GI T+ Sbjct: 6 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANISGYDFIVIDTGGIDGTE 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL---------KEINSKKEISFPKNIDFIFIGTKSDL- 331 + VE++ +++ L +E AD++L L +I + + +N + + K+D Sbjct: 66 EGVEEKMAEQSLLAIEEADVVLFLVDARAGLTPADIGIAQYLRQRQNKITVVVANKTDGI 125 Query: 332 -YSTYTEEYDHL-------ISSFTGEGLEELINKIKSILSNKFK 367 ++ E+ L I++ G G+ +L+ + + L+ K K Sbjct: 126 DADSHCAEFYQLGLGEIAQIAASQGRGVTQLMEDVLAPLAEKMK 169 >gi|312796097|ref|YP_004029019.1| GTP-binding protein [Burkholderia rhizoxinica HKI 454] gi|312167872|emb|CBW74875.1| GTP-binding protein [Burkholderia rhizoxinica HKI 454] Length = 444 Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 38/101 (37%), Positives = 65/101 (64%), Gaps = 5/101 (4%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 +G KI I+G N GKS+L NAL ++ I D+PGTTRD + ID + +G + DTAG+ Sbjct: 177 HGVKIAIVGRPNVGKSTLVNALLGEERVIAFDLPGTTRDSIYIDFERQGRPYTLIDTAGL 236 Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 R+ + VEK + +T + +A++++LL ++++++IS Sbjct: 237 RKRGKVFEAVEKFSVVKTLQSIADANVVILL--LDARQDIS 275 Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 9/89 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L + A+V D+PG TRD + + + DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGERPYLVVDTGGF---- 60 Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305 + V K+GI ++T VE AD+++ + Sbjct: 61 EPVAKDGILHEMARQTRQAVEEADVVVFV 89 >gi|213649049|ref|ZP_03379102.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 174 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 55/176 (31%), Positives = 86/176 (48%), Gaps = 21/176 (11%) Query: 284 VEKEGIKRTFLEVENADLILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLY 332 VE+ GI+R + E+E AD +L + + + + PKN+ + K+D+ Sbjct: 1 VERIGIERAWQEIEQADRVLFMVDGTTTDAVDPADIWPDFIARLPKNLPITVVRNKADIT 60 Query: 333 STY---TEEYDH---LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT 386 +E H +S+ TGEG++ L N +K + + + +RHL L++ Sbjct: 61 GETLGISEVNGHSLVRLSARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALAEA 119 Query: 387 VRYLEM--ASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +LE A L G +++AE LRLA SL +ITG + LL IFS FCIGK Sbjct: 120 ANHLEQGKAQLLGAWAG-ELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSFCIGK 174 >gi|325972629|ref|YP_004248820.1| GTP-binding protein engA [Spirochaeta sp. Buddy] gi|324027867|gb|ADY14626.1| GTP-binding protein engA [Spirochaeta sp. Buddy] Length = 514 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 39/88 (44%), Positives = 55/88 (62%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 KI ILG N GKS+L N L KD++IV+DI GTTRDV+ + +G + DTAGIR Sbjct: 194 KIAILGKPNTGKSTLTNLLVGKDISIVSDIAGTTRDVVMGSFNYKGSDFTVLDTAGIRRK 253 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305 + D+ VE + R ++ AD++LL+ Sbjct: 254 SKVDEDVEYYSVNRAIKTIDEADVVLLM 281 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 77/160 (48%), Gaps = 20/160 (12%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--- 278 + I+G N GKS+LFN L K AI PG TRD++ L + V + D+ G++ Sbjct: 22 VSIIGRPNVGKSTLFNRLIGKRRAITDPTPGVTRDLIPERWLLGNHPVTLIDSGGVKVDR 81 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILL-LKEINSKK----EISFPKNIDFIFIGTKSD-- 330 DD+V ++ + + LE+ +A + ++ E+ ++ E P + + K D Sbjct: 82 DSMDDLVAQKSL--SLLELSDAIVFMMDCTEVTAEDRELLEYLRPFTEKIVLVVNKVDDP 139 Query: 331 -----LYSTYTEEYDHL--ISSFTGEGLEELINKIKSILS 363 L+ Y Y + IS+ G G+EEL + + +L+ Sbjct: 140 KRENLLWEYYEYGYQRILGISAAHGLGIEELEDTLLGMLN 179 >gi|297180284|gb|ADI16503.1| predicted GTPases [uncultured bacterium HF4000_05M23] Length = 440 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 38/88 (43%), Positives = 54/88 (61%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 ++ I G NAGKS+LFNALA +D AIV+ +PGTTRD L D EG + DTAG+R Sbjct: 179 RVAIAGRPNAGKSALFNALAGEDRAIVSPVPGTTRDTLDSQFDFEGTRITFLDTAGLRRR 238 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305 + + +EK RT +E + + +L+ Sbjct: 239 GKAEAGIEKYSAIRTIGAIERSYVSILV 266 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 35/90 (38%), Positives = 56/90 (62%), Gaps = 2/90 (2%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI--RE 279 I I+G N GKS+LFN LA + +AIV+DIPGTTRD ++ID + + + DTAG+ R Sbjct: 6 IAIIGRPNVGKSTLFNRLAGRRIAIVSDIPGTTRDRVSIDAEWGRHRYLLVDTAGVEDRP 65 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEIN 309 + ++ + K+ + + AD I+ ++N Sbjct: 66 HNALLWDDIKKQVEIALNQADGIIFTVDVN 95 >gi|159900085|ref|YP_001546332.1| GTP-binding protein EngA [Herpetosiphon aurantiacus ATCC 23779] gi|238687093|sp|A9B567|DER_HERA2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|159893124|gb|ABX06204.1| small GTP-binding protein [Herpetosiphon aurantiacus ATCC 23779] Length = 455 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 41/110 (37%), Positives = 61/110 (55%), Gaps = 3/110 (2%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L ++I H+ G+ E N KI I+G N GKSSL N L ++ +V++IPGTTRD + Sbjct: 162 LLDEIVRHLPAGQEEEEDDNSLKIAIVGRPNVGKSSLLNKLVGEERVVVSNIPGTTRDSI 221 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305 L +G + + DTAGIR I +E+ + RT +E + L+L Sbjct: 222 DTKLTYKGIPITLIDTAGIRRRGSIEQGIERYSVLRTMKAIERCHIALIL 271 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 7/94 (7%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN L + AI+ D GTTRD + G + I DTAG+ D Sbjct: 6 VAIVGRPNVGKSTLFNKLIGERRAIIADEAGTTRDRQYGETIWNGRVFTIVDTAGLLVGD 65 Query: 282 D---IVEKEGIKRTF----LEVENADLILLLKEI 308 D + E ++RT L ++ AD+I+ + ++ Sbjct: 66 DDPNLPLAEIVRRTHQQAQLAIDEADVIVFMVDV 99 >gi|270308559|ref|YP_003330617.1| GTP-binding protein [Dehalococcoides sp. VS] gi|270154451|gb|ACZ62289.1| GTP-binding protein [Dehalococcoides sp. VS] Length = 441 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 37/91 (40%), Positives = 55/91 (60%), Gaps = 3/91 (3%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 N K+ ++G +N GKS+L N ++ +IV++IPGTTRD + LD G V + DTAGI Sbjct: 178 NSVKLALVGRANVGKSTLLNTFLGQERSIVSNIPGTTRDAIDTPLDFNGTNVLLIDTAGI 237 Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLL 305 R + VEK + R V+ AD++LL+ Sbjct: 238 RRRGKVESGVEKYSVLRALKAVDRADVVLLV 268 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 79/155 (50%), Gaps = 18/155 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RET 280 I I+G N GKS+L N LA K++AI D+PGTTRD L + + + DT G+ + Sbjct: 8 IAIVGRQNVGKSTLLNRLAHKNLAITEDLPGTTRDRLFTTVSWLDRKLIMVDTGGLDPDI 67 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF--------IFIGTKSD-- 330 + ++ ++ + L ++ ADL+LL+ ++ + S + D I + K+D Sbjct: 68 ESVIGQQVNIQISLAIKEADLVLLVVDVKTGLVTSDYEMADIIRRTGKSVILVANKADNL 127 Query: 331 -LYSTYTEEYD------HLISSFTGEGLEELINKI 358 + E Y +IS+F G G+ +L++++ Sbjct: 128 KMGQDAAEFYSLGFGEPSVISAFHGNGISDLMDRV 162 >gi|118594978|ref|ZP_01552325.1| GTP-binding protein EngA [Methylophilales bacterium HTCC2181] gi|118440756|gb|EAV47383.1| GTP-binding protein EngA [Methylophilales bacterium HTCC2181] Length = 474 Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 39/94 (41%), Positives = 58/94 (61%), Gaps = 3/94 (3%) Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274 I + KI I+G N GKS+L NAL ++ IV D GTTRD +++D D G ++DT Sbjct: 171 IFKGAPKITIVGRPNVGKSTLVNALVGEERFIVFDQAGTTRDAVSVDFDFNGDRFVLTDT 230 Query: 275 AGIRETDDI---VEKEGIKRTFLEVENADLILLL 305 AGIR+ + VEK + +T VE++D+I+L+ Sbjct: 231 AGIRKKGKVFETVEKFSVLKTLAAVESSDVIILV 264 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKSSLFN L K A+V D+PG TRD + +E + DT G Sbjct: 4 VAIVGRPNVGKSSLFNRLTKSRDALVADLPGLTRDRHYGKITIEDAQFILVDTGGFEPKK 63 Query: 282 DI-VEKEGIKRTFLEVENADLILLL 305 I + K+ +T L ++ D+IL + Sbjct: 64 KIGIAKKMALQTLLAIDECDVILFV 88 >gi|313673994|ref|YP_004052105.1| ribosome-associated gtpase enga [Calditerrivibrio nitroreducens DSM 19672] gi|312940750|gb|ADR19942.1| ribosome-associated GTPase EngA [Calditerrivibrio nitroreducens DSM 19672] Length = 440 Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 50/144 (34%), Positives = 80/144 (55%), Gaps = 13/144 (9%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ ILG N GKS+LFN +A + +AI D+PG TRD+L EG + DT G Sbjct: 3 KVGILGRPNVGKSTLFNRIAGRRIAITDDMPGVTRDMLETICHWEGKNFLLIDTPGFDLK 62 Query: 281 DDIVEKEGIKRTFLEVENADLILLL---KE-INSKKEISFP----KNIDFIFIGTKSDLY 332 DDI++KE K+ F +E DL++L+ KE ++ EI +NI FI + K D Sbjct: 63 DDIIKKEMHKQFFSALEEVDLVILMLDGKEGLHPLDEIVVSMMRERNIPFILVINKID-- 120 Query: 333 STYTEEYDHLISSFTGEGLEELIN 356 ++E + ++ F G++++++ Sbjct: 121 ---SDERELNVAEFYKLGIDDILS 141 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 43/111 (38%), Positives = 60/111 (54%), Gaps = 4/111 (3%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L + I SHI + I KIV++G N GKSSL NA ++ IVT IPGTTRD + Sbjct: 153 LLDRIVSHIKEEPENFIENERLKIVVIGRPNMGKSSLINAWLNEERVIVTPIPGTTRDAV 212 Query: 259 TIDLDLEGYLVKISDTAGIRETD----DIVEKEGIKRTFLEVENADLILLL 305 + G + DTAGIR+ D +EK G R + +E +D+++ L Sbjct: 213 DSYFEYNGEKYILIDTAGIRKKSVMFKDRIEKYGYYRAYDSIERSDVVVAL 263 >gi|313680391|ref|YP_004058130.1| ribosome-associated GTPase enga [Oceanithermus profundus DSM 14977] gi|313153106|gb|ADR36957.1| ribosome-associated GTPase EngA [Oceanithermus profundus DSM 14977] Length = 433 Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 38/85 (44%), Positives = 54/85 (63%), Gaps = 1/85 (1%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I I+G NAGKSSL NA+ +D IV+D PGTTRD + ++LD G + DTAGIR+ Sbjct: 175 RIAIIGRPNAGKSSLLNAILGEDRVIVSDQPGTTRDSIDVELDYGGTRFVLVDTAGIRKR 234 Query: 281 DDI-VEKEGIKRTFLEVENADLILL 304 + VE I+R ++ AD+ +L Sbjct: 235 PETAVEHFAIQRAHRVIQEADVAVL 259 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 35/97 (36%), Positives = 52/97 (53%), Gaps = 7/97 (7%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+VI+G N GKSSL+N L + A+V D G TRD+ ++ E K+ DT G+ Sbjct: 3 KVVIVGRPNVGKSSLYNRLLGRRDAVVADEAGVTRDLKEAVVETERGKFKLVDTGGLWSG 62 Query: 281 DDIVE--KEGIKRTFLEVENADLILLLKEINSKKEIS 315 D KE + R E ADL+L L ++ + E++ Sbjct: 63 DAWEPKIKEKVDRALAE---ADLVLFL--VDGRAELA 94 >gi|302871345|ref|YP_003839981.1| ribosome-associated GTPase EngA [Caldicellulosiruptor obsidiansis OB47] gi|302574204|gb|ADL41995.1| ribosome-associated GTPase EngA [Caldicellulosiruptor obsidiansis OB47] Length = 440 Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 38/106 (35%), Positives = 61/106 (57%), Gaps = 3/106 (2%) Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262 + +++ + EI N K+ I+G N GKSSL N + ++ IV+DIPGTTRD + Sbjct: 159 VVNYLDNVGINEIEENTIKVAIIGKPNTGKSSLVNYILGEERVIVSDIPGTTRDAIDSTF 218 Query: 263 DLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305 + EG + + DTAG+R I VE+ + RT +E +D+ ++L Sbjct: 219 EFEGIPITLIDTAGLRRKSKIYDNVERYSMLRTLQAIERSDICIIL 264 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 49/85 (57%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280 + I+G N GKS+LFN L + AIV D PG TRD + + + G + DT GI + Sbjct: 5 VAIVGRPNVGKSTLFNRLIGERRAIVDDTPGITRDRIIGEAEWRGITFNVIDTGGIEPYS 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 +DI+ K+ ++ ++ +D+I+ + Sbjct: 65 EDIILKQMRRQAQFAIDMSDVIIFI 89 >gi|284931171|gb|ADC31109.1| predicted GTPase EngA [Mycoplasma gallisepticum str. F] Length = 456 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 59/193 (30%), Positives = 95/193 (49%), Gaps = 34/193 (17%) Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250 ++L++I+ LKN ++ Q E++ I+G N GKSSL N L KK+ +V+DI Sbjct: 154 DLLDEIIRLKNQFANKKEQ----ELVAT---FCIIGKPNVGKSSLLNQLLKKERVLVSDI 206 Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL-- 305 PGTTRD + L K+ DTAGIR I +EK ++RT + + +ILL+ Sbjct: 207 PGTTRDAIDATFSYNKELYKVIDTAGIRRKGKIETRIEKFSVQRTQQAISRSKMILLMLD 266 Query: 306 --KEINSKKEI----SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIK 359 +++ + E+ + N+ I + K DL ++ D + F K Sbjct: 267 GSVDLSEQDEVIGGLCYEANLPTIIVVNKWDL----VKKDDKTMELF------------K 310 Query: 360 SILSNKFKKLPFS 372 + +KFK LP+S Sbjct: 311 KQIRSKFKYLPWS 323 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 32/85 (37%), Positives = 49/85 (57%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+LFN L K +AIV D PG TRD + D++ +I DT G+ Sbjct: 3 KVAIVGKPNVGKSTLFNRLIKNRIAIVDDTPGITRDRIFGDVEWLTKRFQIIDTGGLTTE 62 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 DI ++ ++ ++ AD+IL + Sbjct: 63 SDIFQRAIEQQVQFAIDEADIILFV 87 >gi|323526574|ref|YP_004228727.1| ribosome-associated GTPase EngA [Burkholderia sp. CCGE1001] gi|323383576|gb|ADX55667.1| ribosome-associated GTPase EngA [Burkholderia sp. CCGE1001] Length = 445 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 36/101 (35%), Positives = 64/101 (63%), Gaps = 5/101 (4%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 +G KI I+G N GKS+L NAL ++ I D+PGTTRD + +D + +G + DTAG+ Sbjct: 178 HGIKIAIVGRPNVGKSTLINALVGEERVIAFDMPGTTRDSIYVDFERQGKPYTLIDTAGL 237 Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 R + +EK + +T + +A++++LL ++++++IS Sbjct: 238 RRRGKVFEAIEKFSVVKTLQSISDANVVILL--LDARQDIS 276 Score = 43.5 bits (101), Expect = 0.060, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 9/89 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L + A+V D+PG TRD + + DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRTGERPYLVVDTGGF---- 60 Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305 + V K+GI ++T VE +D+++ + Sbjct: 61 EPVAKDGILHEMARQTRQAVEESDIVVFI 89 >gi|147669843|ref|YP_001214661.1| GTP-binding protein EngA [Dehalococcoides sp. BAV1] gi|146270791|gb|ABQ17783.1| small GTP-binding protein [Dehalococcoides sp. BAV1] Length = 442 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 36/90 (40%), Positives = 56/90 (62%), Gaps = 3/90 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ ++G +N GKS+L N +D +IV++IPGTTRD + LD +G V + DTAGIR Sbjct: 182 KLALVGRTNVGKSTLLNTFLGEDRSIVSNIPGTTRDAIDTPLDFDGTNVLLIDTAGIRRR 241 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKE 307 + VEK + R ++ AD++LL+ + Sbjct: 242 GKVESGVEKYSVLRALKAIDRADVVLLVMD 271 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 84/171 (49%), Gaps = 22/171 (12%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RET 280 I I+G N GKS+L N LA K++AI D+PGTTRD L + + + DT G+ + Sbjct: 9 IAIVGRQNVGKSTLLNRLAHKNLAITEDLPGTTRDRLFATVSWLDRRLIMVDTGGLDPDI 68 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS--------KKEISFPKNIDFIFIGTKSD-- 330 + ++ ++ + L ++ ADL+LL+ ++ +I I + K+D Sbjct: 69 ESVIGQQVNIQISLAIKEADLVLLVVDVKDGLITPDYEMADIIRRTGKPVILVANKADNL 128 Query: 331 -LYSTYTEEYD------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374 + TE Y +IS+F G G+ +L++++ L ++ P + P Sbjct: 129 KMGQEATEFYSLGFGEPAVISAFHGTGISDLMDRVLEELPDQ----PIATP 175 >gi|186476174|ref|YP_001857644.1| GTP-binding protein EngA [Burkholderia phymatum STM815] gi|238691310|sp|B2JIU7|DER_BURP8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|184192633|gb|ACC70598.1| small GTP-binding protein [Burkholderia phymatum STM815] Length = 446 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 37/105 (35%), Positives = 66/105 (62%), Gaps = 5/105 (4%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273 E ++G KI I+G N GKS+L N L +D I D+PGTTRD + +D + +G + D Sbjct: 175 EKAQHGIKIAIVGRPNVGKSTLVNTLIGEDRVIAFDMPGTTRDSIYVDFERQGKKYTLID 234 Query: 274 TAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 TAG+R+ + +EK + +T + +A++++LL ++++++IS Sbjct: 235 TAGLRKRGKVFEAIEKFSVVKTLQSISDANVVILL--LDARQDIS 277 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 34/92 (36%), Positives = 50/92 (54%), Gaps = 14/92 (15%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG---YLVKISDTAGIR 278 I ++G N GKS+LFN L + A+V D+PG TRD + + G YLV DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGGERPYLV--VDTGGF- 61 Query: 279 ETDDIVEKEGI-----KRTFLEVENADLILLL 305 + V K+GI ++T VE +D+I+ + Sbjct: 62 ---EPVAKDGILFEMARQTRQAVEESDVIVFI 90 >gi|330837623|ref|YP_004412264.1| GTP-binding protein engA [Spirochaeta coccoides DSM 17374] gi|329749526|gb|AEC02882.1| GTP-binding protein engA [Spirochaeta coccoides DSM 17374] Length = 547 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 37/88 (42%), Positives = 57/88 (64%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 K+ +LG N GKS+L N L ++V+IV+DIPGTTRDV++ D +G I DTAGIR Sbjct: 197 KLAVLGKPNTGKSTLTNLLVGQEVSIVSDIPGTTRDVVSGDFLYKGTPFTILDTAGIRRK 256 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305 + D+ VE + R ++ ++++LL+ Sbjct: 257 SKVDEDVEYYSVNRAIKTIDESNVVLLM 284 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 10/94 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS+LFN L K I PG TRD ++ L G+ V + DT G++ Sbjct: 24 IAIVGRPNTGKSTLFNRLVGKRRMITDPTPGVTRDPVSEHWMLGGHSVMLVDTGGVK--- 80 Query: 282 DIVEKEGIKRTFLE-----VENADLILLLKEINS 310 +++EG+ E +E A +++LL E + Sbjct: 81 --LDREGLDHLVSEKSLSILERAHVLILLLECTT 112 >gi|170694783|ref|ZP_02885934.1| small GTP-binding protein [Burkholderia graminis C4D1M] gi|170140414|gb|EDT08591.1| small GTP-binding protein [Burkholderia graminis C4D1M] Length = 445 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 36/101 (35%), Positives = 63/101 (62%), Gaps = 5/101 (4%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 G KI I+G N GKS+L NAL ++ I D+PGTTRD + +D + +G + DTAG+ Sbjct: 178 RGVKIAIVGRPNVGKSTLINALVGEERVIAFDMPGTTRDSIYVDFERQGKPYTLIDTAGL 237 Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 R + +EK + +T + +A++++LL ++++++IS Sbjct: 238 RRRGKVFEAIEKFSVVKTLQSISDANVVILL--LDARQDIS 276 Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust. Identities = 42/161 (26%), Positives = 76/161 (47%), Gaps = 32/161 (19%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L + A+V D+PG TRD + + DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRTGERPYLVVDTGGF---- 60 Query: 282 DIVEKEGI-----KRTFLEVENADLILLLKEINSKKEISFPKNID------------FIF 324 + V K+GI ++T VE +D+++ + ++ + ++ P++ F+ Sbjct: 61 EPVAKDGILHEMARQTRQAVEESDIVVFI--VDGRNGLA-PQDKSIADYLRKTGRPIFLV 117 Query: 325 IGTKSDL-YSTYTEEYDHL-------ISSFTGEGLEELINK 357 + + YST ++ L IS+ G+G+ E+IN+ Sbjct: 118 VNKAEGMKYSTVAADFYELGLGDPRAISAAHGDGVTEMINE 158 >gi|157364503|ref|YP_001471270.1| small GTP-binding protein [Thermotoga lettingae TMO] gi|166920104|sp|A8F7S2|DER_THELT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|157315107|gb|ABV34206.1| small GTP-binding protein [Thermotoga lettingae TMO] Length = 435 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 39/89 (43%), Positives = 55/89 (61%), Gaps = 4/89 (4%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI I+G N GKSSLFNAL D A VT +PGTTRD + +++ G + DTAG+R Sbjct: 179 KIAIVGKPNVGKSSLFNALLNMDRATVTPVPGTTRDPVDEMIEINGKKYILVDTAGMRRK 238 Query: 281 DDI----VEKEGIKRTFLEVENADLILLL 305 I +E+ I RT +++AD++LL+ Sbjct: 239 SRIERKTIEQFSISRTIDTIQSADVVLLV 267 Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust. Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 5/87 (5%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT--IDLDLEGYLVKISDTAGIRE 279 +VI G +N GKS+LFN L + AI I G TRD++ + + +L + DT G+ E Sbjct: 4 VVIAGRANVGKSTLFNRLIGRRKAITEKIEGVTRDIIKGLVVYNETSFL--LYDTCGVFE 61 Query: 280 -TDDIVEKEGIKRTFLEVENADLILLL 305 T D V + F ADLIL + Sbjct: 62 STRDPVLLAMRDKAFEAFRKADLILFV 88 >gi|21231435|ref|NP_637352.1| GTP-binding protein EngA [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768511|ref|YP_243273.1| GTP-binding protein EngA [Xanthomonas campestris pv. campestris str. 8004] gi|188991681|ref|YP_001903691.1| GTP-binding protein EngA [Xanthomonas campestris pv. campestris str. B100] gi|26006714|sp|Q8P979|DER_XANCP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|81305517|sp|Q4UUM0|DER_XANC8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|229807529|sp|B0RT56|DER_XANCB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|21113105|gb|AAM41276.1| GTP-binding protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573843|gb|AAY49253.1| GTP-binding protein [Xanthomonas campestris pv. campestris str. 8004] gi|167733441|emb|CAP51642.1| GTP-binding protein, probable [Xanthomonas campestris pv. campestris] Length = 465 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 43/162 (26%), Positives = 84/162 (51%), Gaps = 17/162 (10%) Query: 161 WIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLK-----------NDISSHISQ 209 W+ KL + +D ++EE V++ S+ +D++ L ++ + + + Sbjct: 106 WLRKLARPTVLVINKIDGTDEESVRSEFSRYGFSDVVALSAAHRQGIDDLLEEVGARLPE 165 Query: 210 GKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266 GE++ N +I +G N GKS+L N L ++ I +++PGTTRD + +DL+ +G Sbjct: 166 EGAGELLDNDPARVRIAFVGRPNVGKSTLVNRLLGEERMIASEVPGTTRDSIAVDLERDG 225 Query: 267 YLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLL 305 ++ DTAG+R + ++ VEK +T +E + +L+ Sbjct: 226 RQYRLIDTAGLRRRGKVEEAVEKFSAFKTLQAIEQCQVAVLM 267 Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust. Identities = 17/35 (48%), Positives = 24/35 (68%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 + ++G N GKS++FNAL + A+V D PG TRD Sbjct: 5 VALVGRPNVGKSTIFNALTRTRDALVHDQPGVTRD 39 >gi|307729253|ref|YP_003906477.1| ribosome-associated GTPase EngA [Burkholderia sp. CCGE1003] gi|307583788|gb|ADN57186.1| ribosome-associated GTPase EngA [Burkholderia sp. CCGE1003] Length = 445 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 36/101 (35%), Positives = 63/101 (62%), Gaps = 5/101 (4%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 G KI I+G N GKS+L NAL ++ I D+PGTTRD + +D + +G + DTAG+ Sbjct: 178 RGVKIAIVGRPNVGKSTLINALVGEERVIAFDMPGTTRDSIYVDFERQGKPYTLIDTAGL 237 Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 R + +EK + +T + +A++++LL ++++++IS Sbjct: 238 RRRGKVFEAIEKFSVVKTLQSISDANVVILL--LDARQDIS 276 Score = 43.5 bits (101), Expect = 0.060, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 9/89 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L + A+V D+PG TRD + + DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRTGERPYLVVDTGGF---- 60 Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305 + V K+GI ++T VE +D+++ + Sbjct: 61 EPVAKDGILHEMARQTRQAVEESDIVVFI 89 >gi|161524640|ref|YP_001579652.1| GTP-binding protein EngA [Burkholderia multivorans ATCC 17616] gi|189350604|ref|YP_001946232.1| GTP-binding protein EngA [Burkholderia multivorans ATCC 17616] gi|238687037|sp|A9AH00|DER_BURM1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|160342069|gb|ABX15155.1| small GTP-binding protein [Burkholderia multivorans ATCC 17616] gi|189334626|dbj|BAG43696.1| GTP-binding protein [Burkholderia multivorans ATCC 17616] Length = 445 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 37/100 (37%), Positives = 63/100 (63%), Gaps = 5/100 (5%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G KI I+G N GKS+L NAL +D I D+PGTTRD + +D + G + DTAG+R Sbjct: 179 GIKIAIVGRPNVGKSTLVNALIGEDRVIAFDMPGTTRDSIYVDFERNGKKYTLIDTAGLR 238 Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + + +EK + +T + +A++++LL ++++++IS Sbjct: 239 RSGKVFEAIEKFSVVKTLQSISDANVVILL--LDAQQDIS 276 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 9/89 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L + A+V D+PG TRD + + + DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGARPYLVVDTGGF---- 60 Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305 + V K+GI ++T VE AD+++ + Sbjct: 61 EPVAKDGILHEMARQTRQAVEEADVVVFI 89 >gi|55981360|ref|YP_144657.1| GTP-binding protein EngA [Thermus thermophilus HB8] gi|55772773|dbj|BAD71214.1| GTP-binding protein [Thermus thermophilus HB8] Length = 431 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 59/88 (67%), Gaps = 1/88 (1%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G ++ I+G NAGKSSL NA+ ++ IV++ PGTTRD + ++ G + DTAGIR Sbjct: 173 GIRLAIVGRPNAGKSSLLNAILGEERVIVSEEPGTTRDAIDVEFFFGGQRFVLVDTAGIR 232 Query: 279 E-TDDIVEKEGIKRTFLEVENADLILLL 305 + +++VE+ I+R+ ++ AD++LL+ Sbjct: 233 KRPENLVEELAIRRSLRAMDEADVVLLV 260 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/87 (39%), Positives = 54/87 (62%), Gaps = 5/87 (5%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGI 277 +K+VI+G N GKSSLFN L KK A+V D+PG TRD+ ++ D +L + DT G+ Sbjct: 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFL--LVDTGGL 59 Query: 278 RETDDIVEKEGIKRTFLEVENADLILL 304 + D EK+ ++ +E+A+++L Sbjct: 60 -WSGDKWEKKIQEKVDRALEDAEVVLF 85 >gi|148656272|ref|YP_001276477.1| GTP-binding protein EngA [Roseiflexus sp. RS-1] gi|148568382|gb|ABQ90527.1| small GTP-binding protein [Roseiflexus sp. RS-1] Length = 493 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 54/181 (29%), Positives = 91/181 (50%), Gaps = 29/181 (16%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI I+G N GKSSL N L ++ ++V+D+PGTTRD + ++++G + DTAGIR Sbjct: 184 KIAIVGRPNVGKSSLLNRLIGQERSVVSDVPGTTRDSIDTPVEIDGIKALLIDTAGIRRR 243 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKE----------------INSKKEISFPKNID 321 I +E+ + R +E AD+ LLL + + S K ++ N Sbjct: 244 GKIERGLERYSVMRALRAIERADVALLLIDATEGVTAQDTHIAGMILESLKGVAILVNKW 303 Query: 322 FIFI--GTKSDLYSTYTEE------YDHL--ISSFTGEGLEELINKIKSILSNKFKKLPF 371 + + T D +S + E Y L IS+ TG+ +++++ I SN+ +++P Sbjct: 304 DLVVKDNTTFDAFSRHVREAFKFISYAPLLFISAKTGQRVDKVLPLALEIASNRQRRIPT 363 Query: 372 S 372 S Sbjct: 364 S 364 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/56 (48%), Positives = 36/56 (64%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 + ++G N GKS+LFN L + AIV DIPGTTRD L D + G + + DTAG+ Sbjct: 5 VALVGRPNVGKSTLFNRLIGERRAIVEDIPGTTRDRLYGDTEWNGRVFTVVDTAGL 60 >gi|294340463|emb|CAZ88844.1| GTPase involved in ribosome synthesis and maintenance [Thiomonas sp. 3As] Length = 465 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 48/177 (27%), Positives = 78/177 (44%), Gaps = 27/177 (15%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I G N GKS+L NAL ++ I D+PGTTRD + + + +G + DTAG+R Sbjct: 201 RLAIAGRPNVGKSTLVNALVGEERVIAFDMPGTTRDAIEVPFERDGRKFILIDTAGLRRK 260 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKS 329 + VEK + +T +E A++++LL + + + K Sbjct: 261 GKVFEAVEKFSVIKTLQAIEQANVVVLLLDATEGVSDQDAHIASFAVEAGRALVLAANKW 320 Query: 330 DLYSTYTEEYD----------------HLISSFTGEGLEELINKIKSILSNKFKKLP 370 D TY E H IS+ TG GL L+ + + + ++KLP Sbjct: 321 DAVDTYGRERLMVAIRQRLPFVSFAKFHSISARTGSGLNGLMKSVVAAHAAAYRKLP 377 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 1/90 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN + + AIV D+PG TRD L + V + DT G Sbjct: 5 VSLVGRPNVGKSTLFNRMTRSRDAIVADMPGLTRDRHYGMLRMADRPVIVVDTGGFEPVV 64 Query: 282 DI-VEKEGIKRTFLEVENADLILLLKEINS 310 D + + ++T + +DL++ L ++ + Sbjct: 65 DTGIVHQMARQTRQAIAESDLVVFLVDLRT 94 >gi|57233850|ref|YP_182104.1| GTP-binding protein EngA [Dehalococcoides ethenogenes 195] gi|57224298|gb|AAW39355.1| GTP-binding protein [Dehalococcoides ethenogenes 195] Length = 441 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 36/91 (39%), Positives = 55/91 (60%), Gaps = 3/91 (3%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 N K+ ++G +N GKS+L N ++ +IV++IPGTTRD + L+ G V + DTAGI Sbjct: 178 NSVKLALVGRTNVGKSTLLNTFMGQERSIVSNIPGTTRDAIDTPLNFNGTNVLLIDTAGI 237 Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLL 305 R + VEK + R V+ AD++LL+ Sbjct: 238 RRRGKVESGVEKYSVLRALKAVDRADIVLLV 268 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 84/171 (49%), Gaps = 22/171 (12%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RET 280 I I+G N GKS+L N LA K++AI D+PGTTRD L + + + DT G+ + Sbjct: 8 IAIVGRQNVGKSTLLNRLAHKNLAITEDLPGTTRDRLFTTVSWLDRRLIMVDTGGLDPDL 67 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS-----------------KKEISFPKNIDFI 323 + I+ ++ + L ++ ADL+LL+ ++ + K I D + Sbjct: 68 ESIIGQQVNIQISLAIKEADLVLLVVDVKAGLITPDYEMADIIRRTGKPVILVANKADNL 127 Query: 324 FIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374 +G ++ + + +IS+F G G+ +L++++ L ++ P + P Sbjct: 128 KMGQEAAEFYSLGFGEPSVISAFHGSGISDLMDRVLEELPDQ----PIATP 174 >gi|296136228|ref|YP_003643470.1| ribosome-associated GTPase EngA [Thiomonas intermedia K12] gi|295796350|gb|ADG31140.1| ribosome-associated GTPase EngA [Thiomonas intermedia K12] Length = 457 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 48/177 (27%), Positives = 78/177 (44%), Gaps = 27/177 (15%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I G N GKS+L NAL ++ I D+PGTTRD + + + +G + DTAG+R Sbjct: 193 RLAIAGRPNVGKSTLVNALVGEERVIAFDMPGTTRDAIEVPFERDGRKFILIDTAGLRRK 252 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKS 329 + VEK + +T +E A++++LL + + + K Sbjct: 253 GKVFEAVEKFSVIKTLQAIEQANVVVLLLDATEGVSDQDAHIASFAVEAGRALVLAANKW 312 Query: 330 DLYSTYTEEYD----------------HLISSFTGEGLEELINKIKSILSNKFKKLP 370 D TY E H IS+ TG GL L+ + + + ++KLP Sbjct: 313 DAVDTYGRERLMVAIRQRLPFVSFAKFHSISARTGSGLNGLMKSVIAAHAAAYRKLP 369 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 1/90 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN + + AIV D+PG TRD L + V + DT G Sbjct: 5 VSLVGRPNVGKSTLFNRMTRSRDAIVADMPGLTRDRHYGMLRMADRPVIVVDTGGFEPVV 64 Query: 282 DI-VEKEGIKRTFLEVENADLILLLKEINS 310 D + + ++T + +DL++ L ++ + Sbjct: 65 DTGIVHQMARQTRQAIAESDLVVFLVDLRT 94 >gi|167957385|ref|ZP_02544459.1| small GTP-binding protein [candidate division TM7 single-cell isolate TM7c] gi|169835713|ref|ZP_02868901.1| small GTP-binding protein [candidate division TM7 single-cell isolate TM7a] Length = 473 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 36/92 (39%), Positives = 58/92 (63%), Gaps = 3/92 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 ++ ++G N GKS+LFNALA K A+V +I GTTRD+ + + +++ DTAGIR Sbjct: 177 RVALIGRPNVGKSTLFNALAGKQQALVANIAGTTRDINRVQVRYNQNTIELLDTAGIRRQ 236 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEIN 309 + + +EK + RT +E +D+ LLL ++N Sbjct: 237 GKQETGIEKFSVLRTLQAIEESDICLLLLDVN 268 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 32/102 (31%), Positives = 56/102 (54%), Gaps = 5/102 (4%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G +N GKSSLFN + + AIV GTTRD + ++ + + + DTAG+++ + Sbjct: 8 VALIGQANVGKSSLFNRMVRAQQAIVAREAGTTRDSVIGKVEYKKHQFWLVDTAGLKDPN 67 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI 323 D E + E+AD+IL++ + I +P + D I Sbjct: 68 DDFEATIQDQITEASESADVILVVVD-----SIMYPSDQDKI 104 >gi|78047628|ref|YP_363803.1| GTP-binding protein EngA [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|123743974|sp|Q3BTW0|DER_XANC5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|78036058|emb|CAJ23749.1| GTP-binding protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 465 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 42/162 (25%), Positives = 85/162 (52%), Gaps = 17/162 (10%) Query: 161 WIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLK-----------NDISSHISQ 209 W+ KL + +D ++EE V++ ++ +D++ L +++ + + + Sbjct: 106 WLRKLARPTVLVINKIDGTDEETVRSEFARYGFSDVVALSAAHRQGIDELLDEVGARLPE 165 Query: 210 GKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266 GE++ N +I +G N GKS+L N L ++ I +++PGTTRD + +DL+ +G Sbjct: 166 EGAGELLDNDPARVRIAFVGRPNVGKSTLVNRLLGEERMIASEVPGTTRDSIAVDLERDG 225 Query: 267 YLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLL 305 ++ DTAG+R + ++ VEK +T +E + +L+ Sbjct: 226 RQYRLIDTAGLRRRGKVEEAVEKFSAFKTLQAIEQCQVAVLM 267 Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust. Identities = 17/35 (48%), Positives = 24/35 (68%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 + ++G N GKS++FNAL + A+V D PG TRD Sbjct: 5 VALVGRPNVGKSTIFNALTRTRDALVHDQPGVTRD 39 >gi|294625013|ref|ZP_06703663.1| GTP-binding protein EngA [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294666614|ref|ZP_06731853.1| GTP-binding protein EngA [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292600688|gb|EFF44775.1| GTP-binding protein EngA [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292603634|gb|EFF47046.1| GTP-binding protein EngA [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 465 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 42/162 (25%), Positives = 85/162 (52%), Gaps = 17/162 (10%) Query: 161 WIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLK-----------NDISSHISQ 209 W+ KL + +D ++EE V++ ++ +D++ L +++ + + + Sbjct: 106 WLRKLARPTVLVINKIDGTDEETVRSEFARYGFSDVVALSAAHRQGIDELLDEVGARLPE 165 Query: 210 GKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266 GE++ N +I +G N GKS+L N L ++ I +++PGTTRD + +DL+ +G Sbjct: 166 EGAGELLDNDPARVRIAFVGRPNVGKSTLVNRLLGEERMIASEVPGTTRDSIAVDLERDG 225 Query: 267 YLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLL 305 ++ DTAG+R + ++ VEK +T +E + +L+ Sbjct: 226 RQYRLIDTAGLRRRGKVEEAVEKFSAFKTLQAIEQCQVAVLM 267 Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust. Identities = 17/35 (48%), Positives = 24/35 (68%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 + ++G N GKS++FNAL + A+V D PG TRD Sbjct: 5 VALVGRPNVGKSTIFNALTRTRDALVHDQPGVTRD 39 >gi|21242765|ref|NP_642347.1| GTP-binding protein EngA [Xanthomonas axonopodis pv. citri str. 306] gi|325927625|ref|ZP_08188854.1| small GTP-binding protein domain/GTP-binding hypothetical protein [Xanthomonas perforans 91-118] gi|26006715|sp|Q8PKY6|DER_XANAC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|21108245|gb|AAM36883.1| GTP-binding protein [Xanthomonas axonopodis pv. citri str. 306] gi|325541992|gb|EGD13505.1| small GTP-binding protein domain/GTP-binding hypothetical protein [Xanthomonas perforans 91-118] Length = 465 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 42/162 (25%), Positives = 85/162 (52%), Gaps = 17/162 (10%) Query: 161 WIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLK-----------NDISSHISQ 209 W+ KL + +D ++EE V++ ++ +D++ L +++ + + + Sbjct: 106 WLRKLARPTVLVINKIDGTDEETVRSEFARYGFSDVVALSAAHRQGIDELLDEVGARLPE 165 Query: 210 GKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266 GE++ N +I +G N GKS+L N L ++ I +++PGTTRD + +DL+ +G Sbjct: 166 EGAGELLDNDPARVRIAFVGRPNVGKSTLVNRLLGEERMIASEVPGTTRDSIAVDLERDG 225 Query: 267 YLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLL 305 ++ DTAG+R + ++ VEK +T +E + +L+ Sbjct: 226 RQYRLIDTAGLRRRGKVEEAVEKFSAFKTLQAIEQCQVAVLM 267 Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust. Identities = 17/35 (48%), Positives = 24/35 (68%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 + ++G N GKS++FNAL + A+V D PG TRD Sbjct: 5 VALVGRPNVGKSTIFNALTRTRDALVHDQPGVTRD 39 >gi|309791206|ref|ZP_07685738.1| small GTP-binding protein [Oscillochloris trichoides DG6] gi|308226768|gb|EFO80464.1| small GTP-binding protein [Oscillochloris trichoides DG6] Length = 525 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 50/179 (27%), Positives = 85/179 (47%), Gaps = 31/179 (17%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKSSL N L ++ ++V+ IPGTTRD + ++ G V + DTAGIR + Sbjct: 250 IAIVGRPNVGKSSLLNKLLGQERSVVSAIPGTTRDSIDTEITFHGERVTLIDTAGIRRSG 309 Query: 282 DI---VEKEGIKRTFLEVENADLILLLKE----------------INSKKEISFPKNIDF 322 I +EK + RT +E D+ LLL + +++KK I+ N + Sbjct: 310 RIEQGIEKYSVMRTLRAIERCDVALLLIDAEEGITAQDTHIAGMVLDAKKGIAILVN-KW 368 Query: 323 IFIGTKSDLYSTYTEEYDH-----------LISSFTGEGLEELINKIKSILSNKFKKLP 370 I ++ + Y ++ IS+ +G+ + +I + I + K++P Sbjct: 369 DVIEKDNETFQEYEDQVRQAFKFIDYAPVLFISALSGQRVSRVIQLAQEIYDQRQKRVP 427 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 7/91 (7%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI---R 278 + ++G N GKS+ FN L + AIV D+PGTTRD + D G + DTAG+ Sbjct: 71 VALVGRPNVGKSTFFNRLIGERRAIVEDMPGTTRDRIYGDTFWNGRDFTVVDTAGLLFGG 130 Query: 279 ETDDIVEKEGIKRTF----LEVENADLILLL 305 + ++ E +RT L +E AD ++ + Sbjct: 131 DDPNLPVAEMSRRTREQANLAIEEADAVIFM 161 >gi|254252261|ref|ZP_04945579.1| Small GTP-binding protein domain [Burkholderia dolosa AUO158] gi|124894870|gb|EAY68750.1| Small GTP-binding protein domain [Burkholderia dolosa AUO158] Length = 445 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 37/100 (37%), Positives = 62/100 (62%), Gaps = 5/100 (5%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G KI I+G N GKS+L NAL +D I D+PGTTRD + +D + G + DTAG+R Sbjct: 179 GVKIAIVGRPNVGKSTLVNALIGEDRVIAFDMPGTTRDSIYVDFERNGKKYTLIDTAGLR 238 Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + +EK + +T + +A++++LL ++++++IS Sbjct: 239 RRGKVFEAIEKFSVVKTLQSIADANVVILL--LDAQQDIS 276 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 9/89 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L + A+V D+PG TRD + + + DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGARPYLVVDTGGF---- 60 Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305 + V K+GI ++T VE AD+++ + Sbjct: 61 EPVAKDGILHEMARQTRQAVEEADVVVFI 89 >gi|269792400|ref|YP_003317304.1| small GTP-binding protein [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100035|gb|ACZ19022.1| small GTP-binding protein [Thermanaerovibrio acidaminovorans DSM 6589] Length = 443 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 36/90 (40%), Positives = 57/90 (63%), Gaps = 3/90 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 K+ ++G N GKSSLFN L ++ A+V+ IPGTTRD + +D+ L V++ DTAG+R Sbjct: 177 KLSVVGRPNVGKSSLFNRLIGQERAVVSPIPGTTRDTVDVDVRLGDVDVRLMDTAGMRRK 236 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKE 307 DD +E + RT ++ +D+ L+L + Sbjct: 237 SRVDDPLEYYSVVRTLKAIDRSDVSLVLMD 266 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/56 (48%), Positives = 35/56 (62%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 + I+G N GKSSLFN L + +AIV DIPG TRD L + + +G + DT GI Sbjct: 4 VAIVGRPNVGKSSLFNRLIGRKLAIVEDIPGVTRDRLYAETEWDGKRFYLVDTGGI 59 >gi|222528757|ref|YP_002572639.1| GTP-binding protein EngA [Caldicellulosiruptor bescii DSM 6725] gi|222455604|gb|ACM59866.1| small GTP-binding protein [Caldicellulosiruptor bescii DSM 6725] Length = 440 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 37/106 (34%), Positives = 62/106 (58%), Gaps = 3/106 (2%) Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262 + +++++ + EI K+ I+G N GKSSL N + ++ IV+DIPGTTRD + Sbjct: 159 VVNYLNKEGINEIEEGTIKVAIIGKPNTGKSSLVNYILGEERVIVSDIPGTTRDAIDSTF 218 Query: 263 DLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305 + EG + + DTAG+R I VE+ + RT +E +D+ ++L Sbjct: 219 EFEGIPITLIDTAGLRRKSKIYDNVERYSMLRTLQAIERSDICIIL 264 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 49/85 (57%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280 + I+G N GKS+LFN L + AIV D PG TRD + + + G + DT GI + Sbjct: 5 VAIVGRPNVGKSTLFNRLIGERRAIVDDTPGITRDRIIGETEWRGITFNVIDTGGIEPYS 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 +DI+ K+ ++ ++ +D+I+ + Sbjct: 65 EDIILKQMRRQAQFAIDMSDVIIFM 89 >gi|46199327|ref|YP_004994.1| GTP-binding protein EngA [Thermus thermophilus HB27] gi|46196952|gb|AAS81367.1| GTP-binding protein [Thermus thermophilus HB27] Length = 431 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 58/88 (65%), Gaps = 1/88 (1%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G ++ I+G NAGKSSL NA+ ++ IV++ PGTTRD + ++ G + DTAGIR Sbjct: 173 GIRLAIVGRPNAGKSSLLNAILGEERVIVSEEPGTTRDAIDVEFFFGGQRFVLVDTAGIR 232 Query: 279 E-TDDIVEKEGIKRTFLEVENADLILLL 305 + + +VE+ I+R+ ++ AD++LL+ Sbjct: 233 KRPESLVEELAIRRSLRAMDEADVVLLV 260 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/87 (39%), Positives = 54/87 (62%), Gaps = 5/87 (5%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGI 277 +K+VI+G N GKSSLFN L KK A+V D+PG TRD+ ++ D +L + DT G+ Sbjct: 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFL--LVDTGGL 59 Query: 278 RETDDIVEKEGIKRTFLEVENADLILL 304 + D EK+ ++ +E+A+++L Sbjct: 60 -WSGDKWEKKIQEKVDRALEDAEVVLF 85 >gi|325524779|gb|EGD02753.1| GTP-binding protein Der [Burkholderia sp. TJI49] Length = 445 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 37/100 (37%), Positives = 62/100 (62%), Gaps = 5/100 (5%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G KI I+G N GKS+L NAL +D I D+PGTTRD + +D + G + DTAG+R Sbjct: 179 GIKIAIVGRPNVGKSTLVNALIGEDRVIAFDMPGTTRDSIYVDFERNGKKYTLIDTAGLR 238 Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + +EK + +T + +A++++LL ++++++IS Sbjct: 239 RRGKVFEAIEKFSVVKTLQSISDANVVILL--LDAQQDIS 276 Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 9/89 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L + A+V D+PG TRD + + + DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGERPYLVVDTGGF---- 60 Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305 + V K+GI ++T VE AD+++ + Sbjct: 61 EPVAKDGILHEMARQTRQAVEEADVVVFI 89 >gi|221198076|ref|ZP_03571122.1| ribosome-associated GTPase EngA [Burkholderia multivorans CGD2M] gi|221204366|ref|ZP_03577383.1| ribosome-associated GTPase EngA [Burkholderia multivorans CGD2] gi|221212773|ref|ZP_03585749.1| ribosome-associated GTPase EngA [Burkholderia multivorans CGD1] gi|221166986|gb|EED99456.1| ribosome-associated GTPase EngA [Burkholderia multivorans CGD1] gi|221175223|gb|EEE07653.1| ribosome-associated GTPase EngA [Burkholderia multivorans CGD2] gi|221182008|gb|EEE14409.1| ribosome-associated GTPase EngA [Burkholderia multivorans CGD2M] Length = 445 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 37/100 (37%), Positives = 62/100 (62%), Gaps = 5/100 (5%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G KI I+G N GKS+L NAL +D I D+PGTTRD + +D + G + DTAG+R Sbjct: 179 GIKIAIVGRPNVGKSTLVNALIGEDRVIAFDMPGTTRDSIYVDFERNGKKYTLIDTAGLR 238 Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + +EK + +T + +A++++LL ++++++IS Sbjct: 239 RRGKVFEAIEKFSVVKTLQSISDANVVILL--LDAQQDIS 276 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 9/89 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L + A+V D+PG TRD + + + DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGARPYLVVDTGGF---- 60 Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305 + V K+GI ++T VE AD+++ + Sbjct: 61 EPVAKDGILHEMARQTRQAVEEADVVVFI 89 >gi|78066578|ref|YP_369347.1| GTP-binding protein EngA [Burkholderia sp. 383] gi|123728977|sp|Q39FR3|DER_BURS3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|77967323|gb|ABB08703.1| Small GTP-binding protein [Burkholderia sp. 383] Length = 445 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 37/100 (37%), Positives = 62/100 (62%), Gaps = 5/100 (5%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G KI I+G N GKS+L NAL +D I D+PGTTRD + +D + G + DTAG+R Sbjct: 179 GIKIAIVGRPNVGKSTLVNALIGEDRVIAFDMPGTTRDSIYVDFERNGKKYTLIDTAGLR 238 Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + +EK + +T + +A++++LL ++++++IS Sbjct: 239 RRGKVFEAIEKFSVVKTLQSISDANVVILL--LDAQQDIS 276 Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 9/89 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L + A+V D+PG TRD + + + DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGERPYLVVDTGGF---- 60 Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305 + V K+GI ++T VE AD+++ + Sbjct: 61 EPVAKDGILHEMARQTRQAVEEADVVVFI 89 >gi|206560243|ref|YP_002231007.1| GTP-binding protein EngA [Burkholderia cenocepacia J2315] gi|238693091|sp|B4EAW5|DER_BURCJ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|198036284|emb|CAR52180.1| GTP-binding protein EngA [Burkholderia cenocepacia J2315] Length = 445 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 37/100 (37%), Positives = 62/100 (62%), Gaps = 5/100 (5%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G KI I+G N GKS+L NAL +D I D+PGTTRD + +D + G + DTAG+R Sbjct: 179 GIKIAIVGRPNVGKSTLVNALIGEDRVIAFDMPGTTRDSIYVDFERNGKKYTLIDTAGLR 238 Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + +EK + +T + +A++++LL ++++++IS Sbjct: 239 RRGKVFEAIEKFSVVKTLQSISDANVVILL--LDAQQDIS 276 Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 9/89 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L + A+V D+PG TRD + + + DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGERPYLVVDTGGF---- 60 Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305 + V K+GI ++T VE AD+++ + Sbjct: 61 EPVAKDGILHEMARQTRQAVEEADVVVFI 89 >gi|256827122|ref|YP_003151081.1| small GTP-binding protein domain/GTP-binding hypothetical protein [Cryptobacterium curtum DSM 15641] gi|256583265|gb|ACU94399.1| small GTP-binding protein domain/GTP-binding conserved hypothetical protein [Cryptobacterium curtum DSM 15641] Length = 444 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 36/87 (41%), Positives = 56/87 (64%), Gaps = 3/87 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--- 278 + I+G NAGKSSL N L++ D +IV+D+ GTTRD + + EG ++ DTAG+R Sbjct: 184 VAIIGRPNAGKSSLTNMLSRNDRSIVSDVAGTTRDAIDTLVAHEGRAYRLVDTAGLRRKS 243 Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL 305 + D+ VE G R+ ++ AD++LL+ Sbjct: 244 KIDEDVEYYGFVRSMRAIDRADVVLLM 270 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+ N + D AIV + G TRD D D G+ + DT GI D Sbjct: 6 VAVVGRPNVGKSTFVNRIVHSDEAIVHAMRGVTRDRSYHDADWNGHHFTLIDTGGIEMGD 65 Query: 282 DIVEKEGIK-RTFLEVENADLILLL 305 + + I+ + F D+ILLL Sbjct: 66 EDAFQTSIRNQAFTAARECDVILLL 90 >gi|219850590|ref|YP_002465023.1| GTP-binding protein EngA [Chloroflexus aggregans DSM 9485] gi|254783144|sp|B8GAY7|DER_CHLAD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|219544849|gb|ACL26587.1| small GTP-binding protein [Chloroflexus aggregans DSM 9485] Length = 449 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 52/189 (27%), Positives = 87/189 (46%), Gaps = 45/189 (23%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSL N L K+ ++V+ IPGTTRD + + G + + DTAGIR Sbjct: 184 RVAIVGRPNVGKSSLLNRLLGKERSVVSPIPGTTRDPIDTTITYYGEPITLIDTAGIRRA 243 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKE----------------INSKKEISFPKNID 321 I +EK + RT +E D+ +LL + I +KK + Sbjct: 244 GKIERGIEKYSVLRTLRAIERCDVAMLLVDATEGVTAQDTHIAGMVIEAKKGL------- 296 Query: 322 FIFIGTKSDLYSTYTE---EYDH---------------LISSFTGEGLEELINKIKSILS 363 I + K D + ++ E++H IS+ TG+ + L++ + I + Sbjct: 297 -ILVVNKWDAITKDSQTYYEFEHRVREAFKFVDYAPIVFISALTGQRVSHLLDYAREIYA 355 Query: 364 NKFKKLPFS 372 + K++P S Sbjct: 356 QRQKRIPTS 364 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/81 (41%), Positives = 45/81 (55%), Gaps = 3/81 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI---R 278 + I+G N GKS+ FN L + AIV DIPGTTRD L D G + DTAG+ Sbjct: 6 VAIVGRPNVGKSTFFNRLIGERRAIVEDIPGTTRDRLYGDTFWNGREFTVVDTAGLLFGD 65 Query: 279 ETDDIVEKEGIKRTFLEVENA 299 E + E E +RT ++ E+A Sbjct: 66 EDPSLPEVEIARRTRVQAEHA 86 >gi|107029013|ref|YP_626108.1| GTP-binding protein EngA [Burkholderia cenocepacia AU 1054] gi|116689829|ref|YP_835452.1| GTP-binding protein EngA [Burkholderia cenocepacia HI2424] gi|170733168|ref|YP_001765115.1| GTP-binding protein EngA [Burkholderia cenocepacia MC0-3] gi|123370031|sp|Q1BGX0|DER_BURCA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|166224312|sp|A0K7T2|DER_BURCH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|238688579|sp|B1JT88|DER_BURCC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|105898177|gb|ABF81135.1| Small GTP-binding protein domain protein [Burkholderia cenocepacia AU 1054] gi|116647918|gb|ABK08559.1| small GTP-binding protein [Burkholderia cenocepacia HI2424] gi|169816410|gb|ACA90993.1| small GTP-binding protein [Burkholderia cenocepacia MC0-3] Length = 445 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 37/100 (37%), Positives = 62/100 (62%), Gaps = 5/100 (5%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G KI I+G N GKS+L NAL +D I D+PGTTRD + +D + G + DTAG+R Sbjct: 179 GIKIAIVGRPNVGKSTLVNALIGEDRVIAFDMPGTTRDSIYVDFERNGKKYTLIDTAGLR 238 Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + +EK + +T + +A++++LL ++++++IS Sbjct: 239 RRGKVFEAIEKFSVVKTLQSISDANVVILL--LDAQQDIS 276 Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 9/89 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L + A+V D+PG TRD + + + DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGERPYLVVDTGGF---- 60 Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305 + V K+GI ++T VE AD+++ + Sbjct: 61 EPVAKDGILHEMARQTRQAVEEADVVVFI 89 >gi|209521123|ref|ZP_03269851.1| small GTP-binding protein [Burkholderia sp. H160] gi|209498433|gb|EDZ98560.1| small GTP-binding protein [Burkholderia sp. H160] Length = 445 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 36/100 (36%), Positives = 62/100 (62%), Gaps = 5/100 (5%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G KI I+G N GKS+L NAL ++ I D+PGTTRD + +D + G + DTAG+R Sbjct: 179 GVKIAIVGRPNVGKSTLINALVGEERVIAFDMPGTTRDSIYVDFERNGKPYTLIDTAGLR 238 Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + +EK + +T + +A++++LL ++++++IS Sbjct: 239 RRGKVFEAIEKFSVVKTLQSISDANVVILL--LDARQDIS 276 Score = 43.1 bits (100), Expect = 0.081, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 9/89 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L + A+V D+PG TRD + + DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRAGERPYLVVDTGGF---- 60 Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305 + V K+GI ++T VE +D+++ + Sbjct: 61 EPVAKDGILHEMARQTRQAVEESDVVVFI 89 >gi|90021085|ref|YP_526912.1| GTP-binding protein EngA [Saccharophagus degradans 2-40] gi|123396308|sp|Q21KS9|DER_SACD2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|89950685|gb|ABD80700.1| Small GTP-binding protein domain [Saccharophagus degradans 2-40] Length = 471 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 35/90 (38%), Positives = 57/90 (63%), Gaps = 3/90 (3%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G K+ I+G N GKS+L N + +D +V D+PGTTRD + I+ + +G I DTAG+R Sbjct: 176 GIKLAIVGRPNVGKSTLVNRMLGEDRVVVYDMPGTTRDSIYIEYERDGKAYTIIDTAGVR 235 Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLL 305 +I VEK I +T +++A++++L+ Sbjct: 236 RRKNIKLSVEKFSIVKTLQAIDDANVVILV 265 Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust. Identities = 23/84 (27%), Positives = 41/84 (48%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + AIV + G TRD + + DT GI + Sbjct: 5 LALVGRPNVGKSTLFNRLTRSRDAIVANFSGLTRDRQYGEATHGDKRFIVVDTGGISGEE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + ++ ++ +E AD++ + Sbjct: 65 EGIDSYMAGQSLQAIEEADMVAFI 88 >gi|134295839|ref|YP_001119574.1| GTP-binding protein EngA [Burkholderia vietnamiensis G4] gi|166224317|sp|A4JEN6|DER_BURVG RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|134138996|gb|ABO54739.1| small GTP-binding protein [Burkholderia vietnamiensis G4] Length = 445 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 37/100 (37%), Positives = 62/100 (62%), Gaps = 5/100 (5%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G KI I+G N GKS+L NAL +D I D+PGTTRD + +D + G + DTAG+R Sbjct: 179 GIKIAIVGRPNVGKSTLVNALIGEDRVIAFDMPGTTRDSIYVDFERNGKKYTLIDTAGLR 238 Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + +EK + +T + +A++++LL ++++++IS Sbjct: 239 RRGKVFEAIEKFSVVKTLQSISDANVVILL--LDAQQDIS 276 Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 9/89 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L + A+V D+PG TRD + + + DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGERPYLVVDTGGF---- 60 Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305 + V K+GI ++T VE AD+++ + Sbjct: 61 EPVAKDGILHEMARQTRQAVEEADVVVFI 89 >gi|115351797|ref|YP_773636.1| GTP-binding protein EngA [Burkholderia ambifaria AMMD] gi|170702835|ref|ZP_02893684.1| small GTP-binding protein [Burkholderia ambifaria IOP40-10] gi|171321331|ref|ZP_02910290.1| small GTP-binding protein [Burkholderia ambifaria MEX-5] gi|122323095|sp|Q0BEX1|DER_BURCM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|115281785|gb|ABI87302.1| small GTP-binding protein [Burkholderia ambifaria AMMD] gi|170132253|gb|EDT00732.1| small GTP-binding protein [Burkholderia ambifaria IOP40-10] gi|171093388|gb|EDT38576.1| small GTP-binding protein [Burkholderia ambifaria MEX-5] Length = 445 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 37/100 (37%), Positives = 62/100 (62%), Gaps = 5/100 (5%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G KI I+G N GKS+L NAL +D I D+PGTTRD + +D + G + DTAG+R Sbjct: 179 GIKIAIVGRPNVGKSTLVNALIGEDRVIAFDMPGTTRDSIYVDFERNGKKYTLIDTAGLR 238 Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + +EK + +T + +A++++LL ++++++IS Sbjct: 239 RRGKVFEAIEKFSVVKTLQSISDANVVILL--LDAQQDIS 276 Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 9/89 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L + A+V D+PG TRD + + + DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGERPYLVVDTGGF---- 60 Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305 + V K+GI ++T VE AD+++ + Sbjct: 61 EPVAKDGILHQMARQTRQAVEEADVVVFI 89 >gi|312128144|ref|YP_003993018.1| ribosome-associated gtpase enga [Caldicellulosiruptor hydrothermalis 108] gi|311778163|gb|ADQ07649.1| ribosome-associated GTPase EngA [Caldicellulosiruptor hydrothermalis 108] Length = 440 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 37/106 (34%), Positives = 62/106 (58%), Gaps = 3/106 (2%) Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262 + +++++ + EI K+ I+G N GKSSL N + ++ IV+DIPGTTRD + Sbjct: 159 VVNYLNKEGINEIEEGTIKVAIIGKPNTGKSSLVNYILGEERVIVSDIPGTTRDAIDSTF 218 Query: 263 DLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305 + EG + + DTAG+R I VE+ + RT +E +D+ ++L Sbjct: 219 EFEGIPITLIDTAGLRRKSKIYDNVERYSMLRTLQAIERSDICIIL 264 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 49/85 (57%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280 + I+G N GKS+LFN L + AIV D PG TRD + + + G + DT GI + Sbjct: 5 VAIVGRPNVGKSTLFNRLIGERRAIVDDTPGITRDRIIGETEWRGITFNVIDTGGIEPYS 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 +DI+ K+ ++ ++ +D+I+ + Sbjct: 65 EDIILKQMRRQAQFAIDMSDVIIFM 89 >gi|254248074|ref|ZP_04941395.1| Small GTP-binding protein domain [Burkholderia cenocepacia PC184] gi|124872850|gb|EAY64566.1| Small GTP-binding protein domain [Burkholderia cenocepacia PC184] Length = 445 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 37/100 (37%), Positives = 62/100 (62%), Gaps = 5/100 (5%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G KI I+G N GKS+L NAL +D I D+PGTTRD + +D + G + DTAG+R Sbjct: 179 GIKIAIVGRPNVGKSTLVNALIGEDRVIAFDMPGTTRDSIYVDFERNGKKYTLIDTAGLR 238 Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + +EK + +T + +A++++LL ++++++IS Sbjct: 239 RRGKVFEAIEKFSVVKTLQSISDANVVILL--LDAQQDIS 276 Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 9/89 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L + A+V D+PG TRD + + I DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGERPYLIVDTGGF---- 60 Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305 + V K+GI ++T VE AD+++ + Sbjct: 61 EPVAKDGILHEMARQTRQAVEEADVVVFI 89 >gi|172060768|ref|YP_001808420.1| GTP-binding protein EngA [Burkholderia ambifaria MC40-6] gi|238689149|sp|B1YR40|DER_BURA4 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|171993285|gb|ACB64204.1| small GTP-binding protein [Burkholderia ambifaria MC40-6] Length = 445 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 37/100 (37%), Positives = 62/100 (62%), Gaps = 5/100 (5%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G KI I+G N GKS+L NAL +D I D+PGTTRD + +D + G + DTAG+R Sbjct: 179 GIKIAIVGRPNVGKSTLVNALIGEDRVIAFDMPGTTRDSIYVDFERNGKKYTLIDTAGLR 238 Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + +EK + +T + +A++++LL ++++++IS Sbjct: 239 RRGKVFEAIEKFSVVKTLQSISDANVVILL--LDAQQDIS 276 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 9/89 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L + A+V D+PG TRD + + + DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGERPYLVVDTGGF---- 60 Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305 + V K+GI ++T VE AD+++ + Sbjct: 61 EPVAKDGILHQMARQTRQAVEEADVVVFI 89 >gi|295676899|ref|YP_003605423.1| ribosome-associated GTPase EngA [Burkholderia sp. CCGE1002] gi|295436742|gb|ADG15912.1| ribosome-associated GTPase EngA [Burkholderia sp. CCGE1002] Length = 445 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 36/100 (36%), Positives = 62/100 (62%), Gaps = 5/100 (5%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G KI I+G N GKS+L NAL ++ I D+PGTTRD + +D + G + DTAG+R Sbjct: 179 GVKIAIVGRPNVGKSTLINALVGEERVIAFDMPGTTRDSIYVDFERNGKPYTLIDTAGLR 238 Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + +EK + +T + +A++++LL ++++++IS Sbjct: 239 RRGKVFEAIEKFSVVKTLQSISDANVVILL--LDARQDIS 276 Score = 43.5 bits (101), Expect = 0.074, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 9/89 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L + A+V D+PG TRD + + DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRTGERPYLVVDTGGF---- 60 Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305 + V K+GI ++T VE +D+++ + Sbjct: 61 EPVAKDGILHEMARQTRQAVEESDVVVFI 89 >gi|114566850|ref|YP_754004.1| hypothetical protein Swol_1325 [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337785|gb|ABI68633.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 441 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 36/88 (40%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI I+G N GKSSL NAL ++ IV+D+PGTTRD + +G + DTAG+R Sbjct: 177 KIAIVGRPNVGKSSLVNALLGEERVIVSDVPGTTRDAIDTPFQFKGQNYLLIDTAGMRRK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 I E+ + RT +E AD++L++ Sbjct: 237 SRIKETTERYSVIRTLKAIERADVVLIM 264 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/85 (45%), Positives = 49/85 (57%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN LA AIV DIPG TRD L D G I DT GIR + Sbjct: 5 VAIVGRPNVGKSTLFNRLAGARKAIVEDIPGVTRDRLYDSSDWNGREFIIIDTGGIRFNE 64 Query: 282 -DIVEKEGIKRTFLEVENADLILLL 305 DI +E + L +E AD+I+L+ Sbjct: 65 GDIFAREIKLQAELAIEEADVIVLV 89 >gi|261416631|ref|YP_003250314.1| ribosome-associated GTPase EngA [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373087|gb|ACX75832.1| ribosome-associated GTPase EngA [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326129|gb|ADL25330.1| ribosome-associated GTPase EngA [Fibrobacter succinogenes subsp. succinogenes S85] Length = 475 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 39/98 (39%), Positives = 57/98 (58%), Gaps = 3/98 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE- 279 + ILG NAGKS+L N L +D A+V+DIPGTTRD + D ++G ++DTAG+R+ Sbjct: 180 RFAILGRPNAGKSTLLNRLLNEDRAVVSDIPGTTRDSIDCDFVVDGQKFVVTDTAGLRKK 239 Query: 280 --TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 +D VE RT + +DL +L+ + EI Sbjct: 240 ARVEDEVEVFSNMRTLESIRRSDLSVLVVDCTRGMEIQ 277 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 76/165 (46%), Gaps = 19/165 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKSSLFN + + A+V+D G TRD + +G+ + DT G D Sbjct: 6 VCIIGRPNVGKSSLFNRILGRRAAVVSDRDGVTRDRHYQNAIYKGHEFTVVDTGGFLPDD 65 Query: 282 --DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPKNI-----DFIFIGTKSDL 331 D++ + F V ADL+L + +I +K + F + I I + KS+L Sbjct: 66 SIDVLADSVRAQIFNAVNEADLVLFMVDIRVGITKLDQQFARLIRKLDKKVILVANKSEL 125 Query: 332 YSTYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFK 367 E Y+ L +S+ TG L++++ S+L + Sbjct: 126 QGDRQESYEFLKLGFGQPRTVSALTGYACLSLLDEVVSVLPTPVR 170 >gi|260913735|ref|ZP_05920211.1| ribosome-associated GTPase EngA [Pasteurella dagmatis ATCC 43325] gi|260632274|gb|EEX50449.1| ribosome-associated GTPase EngA [Pasteurella dagmatis ATCC 43325] Length = 511 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 88/183 (48%), Gaps = 33/183 (18%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI I+G N GKS+L N + +D +V D+PGTTRD + I ++ +G I DTAG+R+ Sbjct: 224 KIAIVGRPNVGKSTLTNRILGEDRVVVYDLPGTTRDSIYIPMERDGQHYTIIDTAGVRKR 283 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNIDFI----------- 323 + VEK + +T +++A+++LL +E S +++S + FI Sbjct: 284 GKVHLAVEKFSVIKTLQAIQDANVVLLTIDAREGVSDQDLSL---LGFILNAGRSLVIVV 340 Query: 324 --FIGTKSDLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLP 370 + G D+ E D H IS+ G G+ L + IK + +K+ Sbjct: 341 NKWDGLNQDIKDQVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSIKEAYACATQKMT 400 Query: 371 FSI 373 S+ Sbjct: 401 TSM 403 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 51/84 (60%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++ GY + DT GI T+ Sbjct: 6 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQANIAGYDFIVIDTGGIDGTE 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE++ +++ L +E AD++L L Sbjct: 66 EGVEEKMAEQSLLAIEEADVVLFL 89 >gi|295106000|emb|CBL03543.1| ribosome-associated GTPase EngA [Gordonibacter pamelaeae 7-10-1-b] Length = 438 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 37/87 (42%), Positives = 53/87 (60%), Gaps = 3/87 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--- 278 + I+G NAGKSSL N + K D +IV+D+ GTTRD + ++ +G L I DTAG+R Sbjct: 181 VAIIGRPNAGKSSLTNKMTKGDRSIVSDVAGTTRDAIDTAVEHDGTLYTIVDTAGLRRKS 240 Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL 305 + D VE G R ++ AD+ LL+ Sbjct: 241 QIDQDVEYYGFVRAMRAIDRADVALLV 267 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+ N +A+ D AIV ++ G TRD + D G K+ DT GI D Sbjct: 6 VAVVGRPNVGKSTFVNRIAQADEAIVHEMRGVTRDRSYHEADWNGVEFKLVDTGGIEMGD 65 Query: 282 DIVEKEGIKRTFLEVEN-ADLILLL 305 D + I+ + N AD+++ + Sbjct: 66 DDAFQGSIRAQAIAGANEADVVIFI 90 >gi|289666002|ref|ZP_06487583.1| GTP-binding protein EngA [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 465 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 42/162 (25%), Positives = 85/162 (52%), Gaps = 17/162 (10%) Query: 161 WIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLK-----------NDISSHISQ 209 W+ KL + +D ++EE V++ ++ +D++ L ++++ + + Sbjct: 106 WLRKLARPTVLVINKIDGTDEETVRSEFARYGFSDVVALSAAHRQGIDELLEEVAARLPE 165 Query: 210 GKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266 GE++ N +I +G N GKS+L N L ++ I +++PGTTRD + +DL+ +G Sbjct: 166 EGSGELLDNDPARVRIAFVGRPNVGKSTLVNRLLGEERMIASEVPGTTRDSIAVDLERDG 225 Query: 267 YLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLL 305 ++ DTAG+R + ++ VEK +T +E + +L+ Sbjct: 226 RQYRLIDTAGLRRRGKVEEAVEKFSAFKTLQAIEQCQVAVLM 267 Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust. Identities = 17/35 (48%), Positives = 24/35 (68%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 + ++G N GKS++FNAL + A+V D PG TRD Sbjct: 5 VALVGRPNVGKSTIFNALTRTRDALVHDQPGVTRD 39 >gi|257093699|ref|YP_003167340.1| GTP-binding protein EngA [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046223|gb|ACV35411.1| small GTP-binding protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 492 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 50/179 (27%), Positives = 81/179 (45%), Gaps = 31/179 (17%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L NAL +D I D PGTTRD + +D + G + DTAG+R Sbjct: 177 KVAIVGRPNVGKSTLINALLGEDRVIAFDQPGTTRDAIEVDFERGGKKYTLIDTAGLRRR 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIG----------T 327 + +EK + +T VE+A +++L+ ++++++I+ FI Sbjct: 237 GRVFETIEKFSVIKTLQAVEDAQVVILV--LDARQDIAEQDAHIAAFIRESGRALVVAVN 294 Query: 328 KSDLYSTYTEEYD----------------HLISSFTGEGLEELINKIKSILSNKFKKLP 370 K D +Y E H +S+ G+GLE L + + LP Sbjct: 295 KWDGLDSYVREQIKGALEGQLGFIDFARFHYVSALRGQGLEPLFRSVDAAYRAAIADLP 353 Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 9/89 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 IV++G N GKS+LFN L + A+V D+PG TRD L + DT G Sbjct: 5 IVLVGRPNVGKSTLFNRLTRTRDALVADLPGLTRDRHYGHGKLGSKPYLVIDTGGF---- 60 Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305 + + K+GI ++T ++ AD+++L+ Sbjct: 61 EPLAKDGIMYHMARQTEQAIDEADVVILV 89 >gi|255764471|ref|YP_003064835.2| GTP-binding protein EngA [Candidatus Liberibacter asiaticus str. psy62] gi|254547822|gb|ACT56895.2| GTP-binding protein EngA [Candidatus Liberibacter asiaticus str. psy62] Length = 470 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 63/181 (34%), Positives = 88/181 (48%), Gaps = 23/181 (12%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 Y I I+G N GKS+LFN L KK +A+V + PG TRD L + G + I DTAGI + Sbjct: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 Query: 280 TDDI-VEKEGIKRTFLEVENADLILLLKEINSKKEI--------SF--PKNIDFIFIGTK 328 + + K+ +T L + A LIL L I+SK I SF KNI I + K Sbjct: 63 GKNCSIAKQMNDQTELAINEAHLILFL--IDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 Query: 329 SD-------LYSTYTEEYDHL--ISSFTGEGLEELINKIKSILSNKFKKLPFS-IPSHKR 378 D Y Y+ ++ + IS+ G EL + I I K+ P I ++KR Sbjct: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 Query: 379 H 379 + Sbjct: 181 N 181 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/88 (28%), Positives = 49/88 (55%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I ++G N GKS+L N L + + G TRD ++I + + + ++I DTAG+R+ Sbjct: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 I +E++ +K++ V + ++L Sbjct: 265 SRITESLEQKTVKKSMQSVRTCETTIVL 292 >gi|156743465|ref|YP_001433594.1| GTP-binding protein EngA [Roseiflexus castenholzii DSM 13941] gi|156234793|gb|ABU59576.1| small GTP-binding protein [Roseiflexus castenholzii DSM 13941] Length = 494 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 37/88 (42%), Positives = 53/88 (60%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI I+G N GKSSL N L ++ ++V+DIPGTTRD + +++ G + DTAGIR Sbjct: 184 KIAIVGRPNVGKSSLLNRLIGQERSVVSDIPGTTRDSIDTPIEIGGVRALLIDTAGIRRR 243 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 I +E+ + R +E AD+ LLL Sbjct: 244 GKIDRGLERYSVMRALRAIERADVALLL 271 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/56 (48%), Positives = 36/56 (64%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 + ++G N GKS+LFN L + AIV DIPGTTRD L D + G + + DTAG+ Sbjct: 5 VALVGRPNVGKSTLFNRLIGERRAIVEDIPGTTRDRLYGDTEWNGRVFTVVDTAGL 60 >gi|58426746|gb|AAW75783.1| GTP-binding protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 490 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 48/179 (26%), Positives = 93/179 (51%), Gaps = 21/179 (11%) Query: 147 MEGMSGELSSLYGQ---WIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLK--- 200 ++G GE SSL + W+ KL + +D ++EE V++ ++ +D++ L Sbjct: 115 VDGREGE-SSLDDEILAWLRKLARPTVLVINKIDGTDEETVRSEFARYGFSDVVALSAAH 173 Query: 201 --------NDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTD 249 ++ + + + GE++ N +I +G N GKS+L N L ++ I ++ Sbjct: 174 RQGIDELLEEVGARLPEEGSGELLDNDPARVRIAFVGRPNVGKSTLVNRLLGEERMIASE 233 Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLL 305 +PGTTRD + +DL+ +G ++ DTAG+R + ++ VEK +T +E + +L+ Sbjct: 234 VPGTTRDSIAVDLERDGRQYRLIDTAGLRRRGKVEEAVEKFSAFKTLQAIERCQVAVLM 292 Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 7/88 (7%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD----VLTIDLDLEGYLVKISDTAGI 277 + ++G N GKS++FNAL + A+V D PG TRD V +D E + DT GI Sbjct: 30 VALVGRPNVGKSTIFNALTRTRDALVHDQPGVTRDRNYGVCRLD---EQQPFIVVDTGGI 86 Query: 278 RETDDIVEKEGIKRTFLEVENADLILLL 305 +D + ++ ADL+L + Sbjct: 87 AGDEDGLAGATARQARAAAGEADLVLFV 114 >gi|326204998|ref|ZP_08194849.1| ribosome-associated GTPase EngA [Clostridium papyrosolvens DSM 2782] gi|325984864|gb|EGD45709.1| ribosome-associated GTPase EngA [Clostridium papyrosolvens DSM 2782] Length = 441 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 56/88 (63%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ ++G NAGKSSL N++ ++ IV++IPGTTRD + ++++G DTAGIR+ Sbjct: 179 KVAVVGKPNAGKSSLINSILGENRVIVSNIPGTTRDAIDTHVEMDGQKYTFIDTAGIRKR 238 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 I +EK R++ +E AD+ L++ Sbjct: 239 SKINETIEKYSTIRSWTAIERADVCLIM 266 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 50/85 (58%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280 + ++G N GKS+ FN LA ++IV D PG TRD + +++ + DT GI + Sbjct: 6 VAVVGRPNVGKSTFFNYLAGSRISIVEDTPGVTRDRIYTEIEWRSTKFTLIDTGGIEPYS 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 +DI+ ++ ++ + +E AD+I+ + Sbjct: 66 EDIIMQQMKRQAEIAIETADVIVFM 90 >gi|312622952|ref|YP_004024565.1| ribosome-associated GTPase enga [Caldicellulosiruptor kronotskyensis 2002] gi|312203419|gb|ADQ46746.1| ribosome-associated GTPase EngA [Caldicellulosiruptor kronotskyensis 2002] Length = 440 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 37/106 (34%), Positives = 61/106 (57%), Gaps = 3/106 (2%) Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262 + ++ ++ + EI K+ I+G N GKSSL N + ++ IV+DIPGTTRD + Sbjct: 159 VVNYFNKEGINEIEEGTIKVAIIGKPNTGKSSLVNYILGEERVIVSDIPGTTRDAIDSTF 218 Query: 263 DLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305 + EG + + DTAG+R I VE+ + RT +E +D+ ++L Sbjct: 219 EFEGIPITLIDTAGLRRKSKIYDNVERYSMLRTLQAIERSDICIIL 264 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 49/85 (57%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280 + I+G N GKS+LFN L + AIV D PG TRD + + + G + DT GI + Sbjct: 5 VAIVGRPNVGKSTLFNRLIGERRAIVDDTPGITRDRIIGETEWRGITFNVIDTGGIEPYS 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 +DI+ K+ ++ ++ +D+I+ + Sbjct: 65 EDIILKQMRRQAQFAIDMSDVIIFM 89 >gi|73749080|ref|YP_308319.1| GTP-binding protein EngA [Dehalococcoides sp. CBDB1] gi|73660796|emb|CAI83403.1| GTP-binding protein EngA [Dehalococcoides sp. CBDB1] Length = 442 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 55/88 (62%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ ++G +N GKS+L N ++ +IV++IPGTTRD + LD +G V + DTAGIR Sbjct: 182 KLALVGRTNVGKSTLLNTFLGEERSIVSNIPGTTRDAIDTPLDFDGTNVLLIDTAGIRRR 241 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + VEK + R ++ AD++LL+ Sbjct: 242 GKVESGVEKYSVLRALKAIDRADVVLLV 269 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 84/171 (49%), Gaps = 22/171 (12%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RET 280 I I+G N GKS+L N LA K++AI D+PGTTRD L + + + DT G+ + Sbjct: 9 IAIVGRQNVGKSTLLNRLAHKNLAITEDLPGTTRDRLFATVSWLDRRLIMVDTGGLDPDI 68 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS--------KKEISFPKNIDFIFIGTKSD-- 330 + ++ ++ + L ++ ADL+LL+ ++ +I I + K+D Sbjct: 69 ESVIGQQVNIQISLAIKEADLVLLVVDVKDGLITPDYEMADIIRRTGKPVILVANKADNL 128 Query: 331 -LYSTYTEEYD------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374 + TE Y +IS+F G G+ +L++++ L ++ P + P Sbjct: 129 KMGQEATEFYSLGFGEPAVISAFHGTGISDLMDRVLEELPDQ----PIATP 175 >gi|209694322|ref|YP_002262250.1| GTP-binding protein EngA [Aliivibrio salmonicida LFI1238] gi|238058970|sp|B6EGZ1|DER_ALISL RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|208008273|emb|CAQ78418.1| GTP-binding protein [Aliivibrio salmonicida LFI1238] Length = 500 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 56/202 (27%), Positives = 106/202 (52%), Gaps = 22/202 (10%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ EG + DTAG+R Sbjct: 212 KLAIIGRPNVGKSTLINRILGEERVVVYDMPGTTRDSIYIPMEREGQEYVLIDTAGVRRR 271 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTE 337 ++ VEK + +T +E+A+++LL+ I++++ IS + D +G + + Sbjct: 272 GRINETVEKFSVIKTLKAIEDANVVLLV--IDARENIS---DQDLSLLGFALNAGRSL-- 324 Query: 338 EYDHLISSFTGEGL-EELINKIKSILSNK-----FKKLPFSIPSHKRHLYHLSQTVRYLE 391 +I+ +GL E+ K+KS L + F +L F H + HL ++V+ Sbjct: 325 ----VIAVNKWDGLNNEVKEKVKSELDRRLGFVDFARLHFISALHGTGVGHLYESVQEAY 380 Query: 392 MASLNEKDCGLDIIAENLRLAS 413 +++ K G ++ +++A Sbjct: 381 VSAT--KRVGTSVLTRVMKMAQ 400 Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN + + A+V D PG TRD LE + DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRVTRTRDALVADFPGLTRDRKYGRAKLEEQEFILIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE + +++ +E AD++L + Sbjct: 65 EGVETKMAEQSLAAIEEADVVLFM 88 >gi|187924514|ref|YP_001896156.1| GTP-binding protein EngA [Burkholderia phytofirmans PsJN] gi|238689579|sp|B2SXS6|DER_BURPP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|187715708|gb|ACD16932.1| small GTP-binding protein [Burkholderia phytofirmans PsJN] Length = 445 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 36/101 (35%), Positives = 62/101 (61%), Gaps = 5/101 (4%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 G KI I+G N GKS+L NAL ++ I D+PGTTRD + +D + G + DTAG+ Sbjct: 178 RGVKIAIVGRPNVGKSTLINALVGEERVIAFDMPGTTRDSIYVDFERGGKPYTLIDTAGL 237 Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 R + +EK + +T + +A++++LL ++++++IS Sbjct: 238 RRRGKVFEAIEKFSVVKTLQSISDANVVILL--LDARQDIS 276 Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 9/89 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L + A+V D+PG TRD + + DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRTRDALVADLPGLTRDRHYGEGRAGDRPYLVVDTGGF---- 60 Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305 + V K+GI ++T VE +D+++ + Sbjct: 61 EPVAKDGILHEMARQTRQAVEESDIVVFI 89 >gi|225374467|ref|ZP_03751688.1| hypothetical protein ROSEINA2194_00082 [Roseburia inulinivorans DSM 16841] gi|225213705|gb|EEG96059.1| hypothetical protein ROSEINA2194_00082 [Roseburia inulinivorans DSM 16841] Length = 449 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 38/88 (43%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI I+G N GKSSL N LA++D IV+DI GTTRD + D+ G DTAG+R Sbjct: 186 KIAIIGKPNVGKSSLINKLAQEDRVIVSDIAGTTRDAIDTDIKYNGKEYVFIDTAGLRRK 245 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + I +E+ I R VE AD+ +++ Sbjct: 246 NKIKEEIERYSIIRAVTAVERADVCIIV 273 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 54/88 (61%), Gaps = 1/88 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFNALA + ++IV D PG TRD + ++ + + DT GI ++ Sbjct: 13 VAIVGRPNVGKSTLFNALAGERISIVQDTPGVTRDRIYAEVSWLDHNFTMIDTGGIEPDS 72 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308 +DI+ + ++ + + AD+I+ + ++ Sbjct: 73 NDIILSQMREQAEIAIATADVIMFIVDV 100 >gi|239616622|ref|YP_002939944.1| small GTP-binding protein [Kosmotoga olearia TBF 19.5.1] gi|259645881|sp|C5CIV1|DER_KOSOT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|239505453|gb|ACR78940.1| small GTP-binding protein [Kosmotoga olearia TBF 19.5.1] Length = 442 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 35/92 (38%), Positives = 57/92 (61%), Gaps = 4/92 (4%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 + K+ I+G NAGKSSLFN++ D ++VT+IPGTTRD++ ++++G V DTAG+ Sbjct: 180 DNLKVAIIGKPNAGKSSLFNSIVGSDRSLVTEIPGTTRDMVDETIEIDGMPVTFIDTAGM 239 Query: 278 RETDDI----VEKEGIKRTFLEVENADLILLL 305 R + VE + R +E +D+ +L+ Sbjct: 240 RRKSKVGVKNVEYYSVMRAVDAIERSDICILV 271 Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET- 280 ++I+G N GKS+LFN L AI+ D PG TRD + + + ++ DT G+ ++ Sbjct: 4 VLIVGRPNVGKSTLFNRLVGGRRAIIDDQPGVTRDFVFGRVFWQHKSFEVVDTCGLFDSP 63 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 DI+E++ + T + DL+L + Sbjct: 64 KDIIEEKMKEVTLALLSEGDLLLFV 88 >gi|296158988|ref|ZP_06841816.1| ribosome-associated GTPase EngA [Burkholderia sp. Ch1-1] gi|295890863|gb|EFG70653.1| ribosome-associated GTPase EngA [Burkholderia sp. Ch1-1] Length = 445 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 36/101 (35%), Positives = 62/101 (61%), Gaps = 5/101 (4%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 G KI I+G N GKS+L NAL ++ I D+PGTTRD + +D + G + DTAG+ Sbjct: 178 RGVKIAIVGRPNVGKSTLINALVGEERVIAFDMPGTTRDSIYVDFERGGKPYTLIDTAGL 237 Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 R + +EK + +T + +A++++LL ++++++IS Sbjct: 238 RRRGKVFEAIEKFSVVKTLQSISDANVVILL--LDARQDIS 276 Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 73/158 (46%), Gaps = 26/158 (16%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L + A+V D+PG TRD + + DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRTGERPYLVVDTGGF---- 60 Query: 282 DIVEKEGI-----KRTFLEVENADLILLLKE------INSKKEISFPKNID---FIFIGT 327 + V K+GI ++T VE +D+++ + + K + + + F+ + Sbjct: 61 EPVAKDGILHEMARQTRQAVEESDIVVFIVDGRNGLAPQDKSIADYLRKVGRPIFLVVNK 120 Query: 328 KSDL-YSTYTEEYDHL-------ISSFTGEGLEELINK 357 + YST ++ L IS+ G+G+ E+IN+ Sbjct: 121 AEGMKYSTVAADFYELGLGDPRAISAAHGDGVTEMINE 158 >gi|260891170|ref|ZP_05902433.1| ribosome-associated GTPase EngA [Leptotrichia hofstadii F0254] gi|260859197|gb|EEX73697.1| ribosome-associated GTPase EngA [Leptotrichia hofstadii F0254] Length = 441 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 39/91 (42%), Positives = 53/91 (58%), Gaps = 3/91 (3%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 NG I ILG NAGKSSL N L ++ +IV+DI GTTRD + L G + DTAGI Sbjct: 174 NGINIAILGRPNAGKSSLVNKLLNEERSIVSDIAGTTRDTIDSSLKYNGETYTLIDTAGI 233 Query: 278 R---ETDDIVEKEGIKRTFLEVENADLILLL 305 R + DD +E + R ++ AD+ +L+ Sbjct: 234 RRKSKVDDDIEYYSVLRAIKAIKRADVCVLM 264 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 50/87 (57%), Gaps = 1/87 (1%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR- 278 + + I+G N GKS+LFN L ++IV D PG TRD L +++ G + DT G+ Sbjct: 3 HTVAIVGRPNVGKSTLFNKLVGDRLSIVKDEPGVTRDRLYREMEWSGKEFILVDTGGLEP 62 Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL 305 T+D + + ++ + ++ AD+I+ L Sbjct: 63 RTEDFMMGKIKQQAQVAIDEADVIIFL 89 >gi|91784203|ref|YP_559409.1| GTP-binding protein EngA [Burkholderia xenovorans LB400] gi|123168328|sp|Q13X32|DER_BURXL RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|91688157|gb|ABE31357.1| Small GTP-binding protein [Burkholderia xenovorans LB400] Length = 445 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 36/101 (35%), Positives = 62/101 (61%), Gaps = 5/101 (4%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 G KI I+G N GKS+L NAL ++ I D+PGTTRD + +D + G + DTAG+ Sbjct: 178 RGVKIAIVGRPNVGKSTLINALVGEERVIAFDMPGTTRDSIYVDFERGGKPYTLIDTAGL 237 Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 R + +EK + +T + +A++++LL ++++++IS Sbjct: 238 RRRGKVFEAIEKFSVVKTLQSISDANVVILL--LDARQDIS 276 Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 73/158 (46%), Gaps = 26/158 (16%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L + A+V D+PG TRD + + DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRTGERPYLVVDTGGF---- 60 Query: 282 DIVEKEGI-----KRTFLEVENADLILLLKE------INSKKEISFPKNID---FIFIGT 327 + V K+GI ++T VE +D+++ + + K + + + F+ + Sbjct: 61 EPVAKDGILHEMARQTRQAVEESDIVVFIVDGRNGLAPQDKSIADYLRKVGRPIFLVVNK 120 Query: 328 KSDL-YSTYTEEYDHL-------ISSFTGEGLEELINK 357 + YST ++ L IS+ G+G+ E+IN+ Sbjct: 121 AEGMKYSTVAADFYELGLGDPRAISAAHGDGVTEMINE 158 >gi|84624044|ref|YP_451416.1| GTP-binding protein EngA [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|161898989|ref|YP_201168.2| GTP-binding protein EngA [Xanthomonas oryzae pv. oryzae KACC10331] gi|188576711|ref|YP_001913640.1| GTP-binding protein EngA [Xanthomonas oryzae pv. oryzae PXO99A] gi|188576902|ref|YP_001913831.1| GTP-binding protein EngA [Xanthomonas oryzae pv. oryzae PXO99A] gi|123752759|sp|Q2P2T5|DER_XANOM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|84367984|dbj|BAE69142.1| GTP-binding protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188521163|gb|ACD59108.1| GTP-binding protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521354|gb|ACD59299.1| GTP-binding protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 465 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 48/179 (26%), Positives = 93/179 (51%), Gaps = 21/179 (11%) Query: 147 MEGMSGELSSLYGQ---WIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLK--- 200 ++G GE SSL + W+ KL + +D ++EE V++ ++ +D++ L Sbjct: 90 VDGREGE-SSLDDEILAWLRKLARPTVLVINKIDGTDEETVRSEFARYGFSDVVALSAAH 148 Query: 201 --------NDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTD 249 ++ + + + GE++ N +I +G N GKS+L N L ++ I ++ Sbjct: 149 RQGIDELLEEVGARLPEEGSGELLDNDPARVRIAFVGRPNVGKSTLVNRLLGEERMIASE 208 Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLL 305 +PGTTRD + +DL+ +G ++ DTAG+R + ++ VEK +T +E + +L+ Sbjct: 209 VPGTTRDSIAVDLERDGRQYRLIDTAGLRRRGKVEEAVEKFSAFKTLQAIERCQVAVLM 267 Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust. Identities = 17/35 (48%), Positives = 24/35 (68%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 + ++G N GKS++FNAL + A+V D PG TRD Sbjct: 5 VALVGRPNVGKSTIFNALTRTRDALVHDQPGVTRD 39 >gi|167569736|ref|ZP_02362610.1| GTP-binding protein EngA [Burkholderia oklahomensis C6786] Length = 445 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 36/100 (36%), Positives = 61/100 (61%), Gaps = 5/100 (5%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G KI I+G N GKS+L N L +D I D+PGTTRD + +D + G + DTAG+R Sbjct: 179 GIKIAIVGRPNVGKSTLVNTLIGEDRVIAFDMPGTTRDSIYVDFERNGKRYTLIDTAGLR 238 Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + +EK + +T + +A++++LL ++++++IS Sbjct: 239 RRGKVFEAIEKFSVVKTLQSISDANVVILL--LDARQDIS 276 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 9/89 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L + A+V D+PG TRD + + + DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGARPYLVVDTGGF---- 60 Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305 + V K+GI ++T VE AD+++ + Sbjct: 61 EPVAKDGILHEMARQTRQAVEEADVVVFI 89 >gi|294660274|ref|NP_852940.2| putative GTPase EngA [Mycoplasma gallisepticum str. R(low)] gi|298286805|sp|Q7NBV2|DER_MYCGA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|284811930|gb|AAP56508.2| predicted GTPase EngA [Mycoplasma gallisepticum str. R(low)] gi|284930404|gb|ADC30343.1| predicted GTPase EngA [Mycoplasma gallisepticum str. R(high)] Length = 456 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 52/160 (32%), Positives = 79/160 (49%), Gaps = 27/160 (16%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 I+G N GKSSL N L KK+ +V+DIPGTTRD + L K+ DTAGIR I Sbjct: 180 IIGKPNVGKSSLLNQLLKKERVLVSDIPGTTRDAIDATFSYNKELYKVIDTAGIRRKGKI 239 Query: 284 ---VEKEGIKRTFLEVENADLILLL----KEINSKKEI----SFPKNIDFIFIGTKSDLY 332 +EK ++RT + + +ILL+ +++ + E+ + N+ I + K DL Sbjct: 240 ATRIEKFSVQRTQQAISRSKMILLMLDGSVDLSEQDEVIGGLCYEANLPTIIVVNKWDL- 298 Query: 333 STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372 ++ D + F K + +KFK LP+S Sbjct: 299 ---VKKDDKTMELF------------KKQIRSKFKYLPWS 323 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 49/85 (57%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+LFN L K +AIV D PG TRD + D++ +I DT G+ Sbjct: 3 KVAIVGKPNVGKSTLFNRLIKNRIAIVDDTPGITRDRIFGDVEWLTKRFQIIDTGGLTTE 62 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 D+ ++ ++ ++ AD+IL + Sbjct: 63 SDVFQRAIEQQVQFAIDEADIILFV 87 >gi|121598397|ref|YP_993149.1| GTP-binding protein EngA [Burkholderia mallei SAVP1] gi|217421388|ref|ZP_03452892.1| ribosome-associated GTPase EngA [Burkholderia pseudomallei 576] gi|237812544|ref|YP_002896995.1| ribosome-associated GTPase EngA [Burkholderia pseudomallei MSHR346] gi|238563546|ref|ZP_00438709.2| ribosome-associated GTPase EngA [Burkholderia mallei GB8 horse 4] gi|242314802|ref|ZP_04813818.1| ribosome-associated GTPase EngA [Burkholderia pseudomallei 1106b] gi|251767656|ref|ZP_02268028.2| ribosome-associated GTPase EngA [Burkholderia mallei PRL-20] gi|254197870|ref|ZP_04904292.1| GTP-binding protein EngA [Burkholderia pseudomallei S13] gi|254199946|ref|ZP_04906312.1| GTP-binding protein EngA [Burkholderia mallei FMH] gi|254206279|ref|ZP_04912631.1| GTP-binding protein EngA [Burkholderia mallei JHU] gi|52426961|gb|AAU47554.1| GTPase family protein [Burkholderia mallei ATCC 23344] gi|76581515|gb|ABA50990.1| GTPase family protein [Burkholderia pseudomallei 1710b] gi|121227207|gb|ABM49725.1| GTPase family protein [Burkholderia mallei SAVP1] gi|147749542|gb|EDK56616.1| GTP-binding protein EngA [Burkholderia mallei FMH] gi|147753722|gb|EDK60787.1| GTP-binding protein EngA [Burkholderia mallei JHU] gi|169654611|gb|EDS87304.1| GTP-binding protein EngA [Burkholderia pseudomallei S13] gi|217395130|gb|EEC35148.1| ribosome-associated GTPase EngA [Burkholderia pseudomallei 576] gi|237503777|gb|ACQ96095.1| ribosome-associated GTPase EngA [Burkholderia pseudomallei MSHR346] gi|238520490|gb|EEP83949.1| ribosome-associated GTPase EngA [Burkholderia mallei GB8 horse 4] gi|242138041|gb|EES24443.1| ribosome-associated GTPase EngA [Burkholderia pseudomallei 1106b] gi|243062055|gb|EES44241.1| ribosome-associated GTPase EngA [Burkholderia mallei PRL-20] Length = 460 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 36/101 (35%), Positives = 61/101 (60%), Gaps = 5/101 (4%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 G KI I+G N GKS+L N L +D I D+PGTTRD + +D + G + DTAG+ Sbjct: 193 RGIKIAIVGRPNVGKSTLVNTLIGEDRVIAFDMPGTTRDSIYVDFERNGKHYTLIDTAGL 252 Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 R + +EK + +T + +A++++LL ++++++IS Sbjct: 253 RRRGKVFEAIEKFSVVKTLQSISDANVVILL--LDARQDIS 291 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 9/89 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L + A+V D+PG TRD + + + DT G Sbjct: 20 IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGARPYLVVDTGGF---- 75 Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305 + V K+GI ++T VE AD+++ + Sbjct: 76 EPVAKDGILHEMARQTRQAVEEADVVVFI 104 >gi|312794132|ref|YP_004027055.1| ribosome-associated gtpase enga [Caldicellulosiruptor kristjanssonii 177R1B] gi|312877879|ref|ZP_07737825.1| ribosome-associated GTPase EngA [Caldicellulosiruptor lactoaceticus 6A] gi|311795342|gb|EFR11725.1| ribosome-associated GTPase EngA [Caldicellulosiruptor lactoaceticus 6A] gi|312181272|gb|ADQ41442.1| ribosome-associated GTPase EngA [Caldicellulosiruptor kristjanssonii 177R1B] Length = 440 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 37/106 (34%), Positives = 61/106 (57%), Gaps = 3/106 (2%) Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262 + ++ + + EI + K+ I+G N GKSSL N + ++ IV+DIPGTTRD + Sbjct: 159 VVNYFDKEGINEIEESTIKVAIIGKPNTGKSSLVNYILGEERVIVSDIPGTTRDAIDSTF 218 Query: 263 DLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305 + EG + + DTAG+R I VE+ + RT +E +D+ ++L Sbjct: 219 EFEGIPITLIDTAGLRRKSKIYDNVERYSMLRTLQAIERSDICIIL 264 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 49/85 (57%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280 + I+G N GKS+LFN L + AIV D PG TRD + + + G + DT GI + Sbjct: 5 VAIVGRPNVGKSTLFNRLIGERRAIVDDTPGITRDRIIGETEWRGITFNVIDTGGIEPYS 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 +DI+ K+ ++ ++ +D+I+ + Sbjct: 65 EDIILKQMRRQAQFAIDMSDVIIFM 89 >gi|312134636|ref|YP_004001974.1| ribosome-associated gtpase enga [Caldicellulosiruptor owensensis OL] gi|311774687|gb|ADQ04174.1| ribosome-associated GTPase EngA [Caldicellulosiruptor owensensis OL] Length = 440 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 37/106 (34%), Positives = 61/106 (57%), Gaps = 3/106 (2%) Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262 + +++ + EI + K+ I+G N GKSSL N + ++ IV+DIPGTTRD + Sbjct: 159 VVNYLDNVGINEIEESTIKVAIIGKPNTGKSSLVNYILGEERVIVSDIPGTTRDAIDSTF 218 Query: 263 DLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305 + EG + + DTAG+R I VE+ + RT +E +D+ ++L Sbjct: 219 EFEGIPITLIDTAGLRRKSKIYDNVERYSMLRTLQAIERSDICIIL 264 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280 + I+G N GKS+LFN L + AIV D PG TRD + + + G + DT GI + Sbjct: 5 VAIVGRPNVGKSTLFNRLIGERRAIVDDTPGITRDRIIGETEWRGITFNVIDTGGIEPYS 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 +DI+ K+ ++ V+ +D+I+ + Sbjct: 65 EDIILKQMRRQAQFAVDMSDVIIFI 89 >gi|167562554|ref|ZP_02355470.1| GTP-binding protein EngA [Burkholderia oklahomensis EO147] Length = 445 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 36/100 (36%), Positives = 61/100 (61%), Gaps = 5/100 (5%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G KI I+G N GKS+L N L +D I D+PGTTRD + +D + G + DTAG+R Sbjct: 179 GIKIAIVGRPNVGKSTLVNTLIGEDRVIAFDMPGTTRDSIYVDFERNGKRYTLIDTAGLR 238 Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + +EK + +T + +A++++LL ++++++IS Sbjct: 239 RRGKVFEAIEKFSVVKTLQSISDANVVILL--LDARQDIS 276 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 13/91 (14%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID--LDLEGYLVKISDTAGIRE 279 I ++G N GKS+LFN L + A+V D+PG TRD + + + YLV DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGVRPYLV--VDTGGF-- 60 Query: 280 TDDIVEKEGI-----KRTFLEVENADLILLL 305 + V K+GI ++T VE AD+++ + Sbjct: 61 --EPVAKDGILHEMARQTRQAVEEADVVVFI 89 >gi|207743439|ref|YP_002259831.1| gtp-binding protein enga (partial sequence c terminus) [Ralstonia solanacearum IPO1609] gi|206594836|emb|CAQ61763.1| putative gtp-binding protein enga (partial sequence c terminus) [Ralstonia solanacearum IPO1609] Length = 363 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 35/101 (34%), Positives = 64/101 (63%), Gaps = 5/101 (4%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 +G +I I+G N GKS+L NAL ++ I D+PGTTRD + +D + G + DTAG+ Sbjct: 95 HGTRIAIVGRPNVGKSTLVNALIGEERVIAFDMPGTTRDAIYVDFERNGKPYTLIDTAGL 154 Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 R+ + +EK + +T + +A++++LL ++++++IS Sbjct: 155 RKRGKVFEAIEKFSVVKTLQSIADANVVVLL--LDAQQDIS 193 >gi|329897033|ref|ZP_08271805.1| GTP-binding protein EngA [gamma proteobacterium IMCC3088] gi|328921473|gb|EGG28859.1| GTP-binding protein EngA [gamma proteobacterium IMCC3088] Length = 463 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 35/91 (38%), Positives = 57/91 (62%), Gaps = 3/91 (3%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 +G K+ I+G N GKS+L N + ++ +V D PGTTRD + ID + EG + DTAG+ Sbjct: 174 HGIKVAIVGRPNVGKSTLVNRMLGEERVVVYDHPGTTRDSVYIDFEREGEQYTLIDTAGV 233 Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLL 305 R ++ VEK I +T +++++++LLL Sbjct: 234 RRRKNVKESVEKFSIVKTLKAIDDSNVVLLL 264 Score = 43.1 bits (100), Expect = 0.084, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 44/84 (52%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L + A+V D G TRD + + + DT GI + Sbjct: 5 IALMGRPNVGKSTLFNQLTRSRDALVADFSGLTRDRKYGEGKVGERPYVVIDTGGITGDE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + ++ +++ + AD++LL+ Sbjct: 65 NGIDLPMAQQSMAAADEADIVLLI 88 >gi|320335804|ref|YP_004172515.1| GTP-binding protein engA [Deinococcus maricopensis DSM 21211] gi|319757093|gb|ADV68850.1| GTP-binding protein engA [Deinococcus maricopensis DSM 21211] Length = 441 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 34/86 (39%), Positives = 54/86 (62%), Gaps = 1/86 (1%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I ++G N GKSSL NA+ + IV+D+PGTTRD + ++ D G + DTAGIR+ Sbjct: 174 RISLIGRPNVGKSSLLNAITGSERVIVSDVPGTTRDSVDVEWDYAGQRFVLVDTAGIRKR 233 Query: 281 DDI-VEKEGIKRTFLEVENADLILLL 305 D +E+ + R+ + +D+ILL+ Sbjct: 234 PDTSIEEYAMMRSEAAITRSDVILLV 259 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 37/66 (56%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 +K+ I+G N GKSSLFN L + A+V D PG TRD + + + + + DT G+ Sbjct: 2 HKVAIVGRPNVGKSSLFNRLVGRREAVVADFPGVTRDAKEGVMLYQNHRIVLIDTGGLWS 61 Query: 280 TDDIVE 285 D+ E Sbjct: 62 GDEWEE 67 >gi|289670462|ref|ZP_06491537.1| GTP-binding protein EngA [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 465 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 42/162 (25%), Positives = 84/162 (51%), Gaps = 17/162 (10%) Query: 161 WIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLK-----------NDISSHISQ 209 W+ KL + +D ++EE V++ ++ +D++ L ++ + + + Sbjct: 106 WLRKLARPTVLVINKIDGTDEETVRSEFARYGFSDVVALSAAHRQGIDELLEEVGARLPE 165 Query: 210 GKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266 GE++ N +I +G N GKS+L N L ++ I +++PGTTRD + +DL+ +G Sbjct: 166 EGSGELLDNDPARVRIAFVGRPNVGKSTLVNRLLGEERMIASEVPGTTRDSIAVDLERDG 225 Query: 267 YLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLL 305 ++ DTAG+R + ++ VEK +T +E + +L+ Sbjct: 226 RQYRLIDTAGLRRRGKVEEAVEKFSAFKTLQAIEQCQVAVLM 267 Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust. Identities = 17/35 (48%), Positives = 24/35 (68%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 + ++G N GKS++FNAL + A+V D PG TRD Sbjct: 5 VALVGRPNVGKSTIFNALTRTRDALVHDQPGVTRD 39 >gi|16330798|ref|NP_441526.1| GTP-binding protein EngA [Synechocystis sp. PCC 6803] gi|8928101|sp|P74120|DER_SYNY3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|1653291|dbj|BAA18206.1| slr1974 [Synechocystis sp. PCC 6803] Length = 452 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 36/91 (39%), Positives = 54/91 (59%), Gaps = 3/91 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKSSL NAL + AIV+ I GTTRD + + ++ G ++ DTAGIR Sbjct: 178 KVAIVGRPNVGKSSLLNALTGEQRAIVSPISGTTRDAIDMVVERNGQKYRLIDTAGIRRK 237 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEI 308 ++ E GI R F + AD++L + ++ Sbjct: 238 KNVDYGAEFFGINRAFKAIRRADVVLFVLDV 268 Score = 40.8 bits (94), Expect = 0.39, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 29/61 (47%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+ N LA AIV D PG TRD ++ DT G+ D Sbjct: 6 VAIIGRPNVGKSTFVNRLAGNQQAIVHDQPGITRDRTYRPAFWRDRDFQVVDTGGLVFND 65 Query: 282 D 282 D Sbjct: 66 D 66 >gi|17545938|ref|NP_519340.1| GTP-binding protein EngA [Ralstonia solanacearum GMI1000] gi|26006721|sp|Q8Y026|DER_RALSO RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|17428233|emb|CAD14921.1| putative gtp-binding protein [Ralstonia solanacearum GMI1000] Length = 447 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 35/101 (34%), Positives = 64/101 (63%), Gaps = 5/101 (4%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 +G +I I+G N GKS+L NAL ++ I D+PGTTRD + +D + G + DTAG+ Sbjct: 179 HGTRIAIVGRPNVGKSTLVNALIGEERVIAFDMPGTTRDAIYVDFERNGKPYTLIDTAGL 238 Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 R+ + +EK + +T + +A++++LL ++++++IS Sbjct: 239 RKRGKVFEAIEKFSVVKTLQSIADANVVVLL--LDAQQDIS 277 Score = 43.1 bits (100), Expect = 0.099, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 68/159 (42%), Gaps = 28/159 (17%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L + A+V D+PG TRD + + DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVADMPGLTRDRHYGEGRVGERPFIAIDTGGF---- 60 Query: 282 DIVEKEGI-----KRTFLEVENADLILL------------------LKEINSKKEISFPK 318 + V KEGI K+T V AD+++ L++ + ++ K Sbjct: 61 EPVAKEGIVAEMAKQTRQAVVEADVVIFIVDGRLGLAPQDRVIADYLRKTGRRILLAVNK 120 Query: 319 NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINK 357 + +D Y + ISS G+G+ EL+++ Sbjct: 121 AEGMKYTAVATDFYELGLGD-PRAISSAHGDGVRELVDE 158 >gi|83747951|ref|ZP_00944982.1| GTP-binding protein [Ralstonia solanacearum UW551] gi|207723168|ref|YP_002253567.1| gtp-binding protein [Ralstonia solanacearum MolK2] gi|83725369|gb|EAP72516.1| GTP-binding protein [Ralstonia solanacearum UW551] gi|206588362|emb|CAQ35325.1| gtp-binding protein [Ralstonia solanacearum MolK2] Length = 447 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 35/101 (34%), Positives = 64/101 (63%), Gaps = 5/101 (4%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 +G +I I+G N GKS+L NAL ++ I D+PGTTRD + +D + G + DTAG+ Sbjct: 179 HGTRIAIVGRPNVGKSTLVNALIGEERVIAFDMPGTTRDAIYVDFERNGKPYTLIDTAGL 238 Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 R+ + +EK + +T + +A++++LL ++++++IS Sbjct: 239 RKRGKVFEAIEKFSVVKTLQSIADANVVVLL--LDAQQDIS 277 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 9/89 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L + A+V D+PG TRD + + DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVADMPGLTRDRHYGEGRVGERPFIAIDTGGF---- 60 Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305 + V KEGI K+T V AD+++ + Sbjct: 61 EPVAKEGIVAEMAKQTRQAVVEADVVIFI 89 >gi|299067270|emb|CBJ38467.1| GTPase involved in ribosome synthesis and maintenance [Ralstonia solanacearum CMR15] Length = 447 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 35/101 (34%), Positives = 64/101 (63%), Gaps = 5/101 (4%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 +G +I I+G N GKS+L NAL ++ I D+PGTTRD + +D + G + DTAG+ Sbjct: 179 HGTRIAIVGRPNVGKSTLVNALIGEERVIAFDMPGTTRDAIYVDFERNGKPYTLIDTAGL 238 Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 R+ + +EK + +T + +A++++LL ++++++IS Sbjct: 239 RKRGKVFEAIEKFSVVKTLQSIADANVVVLL--LDAQQDIS 277 Score = 43.1 bits (100), Expect = 0.099, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 68/159 (42%), Gaps = 28/159 (17%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L + A+V D+PG TRD + + DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGERPFIAIDTGGF---- 60 Query: 282 DIVEKEGI-----KRTFLEVENADLILL------------------LKEINSKKEISFPK 318 + V KEGI K+T V AD+++ L++ + ++ K Sbjct: 61 EPVAKEGIVAEMAKQTRQAVVEADVVIFIVDGRLGLAPQDRVIADYLRKTGRRILLAVNK 120 Query: 319 NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINK 357 + +D Y + ISS G+G+ EL+++ Sbjct: 121 AEGMKYTAVATDFYELGLGD-PRAISSAHGDGVRELVDE 158 >gi|226320990|ref|ZP_03796535.1| ribosome-associated GTPase EngA [Borrelia burgdorferi 29805] gi|226233591|gb|EEH32327.1| ribosome-associated GTPase EngA [Borrelia burgdorferi 29805] Length = 433 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 40/110 (36%), Positives = 64/110 (58%), Gaps = 7/110 (6%) Query: 207 ISQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL 264 + GK+G I +G K+ I+G N+GKS+L N L+ ++AIV+D PGTTRD + Sbjct: 161 VEVGKVG--IESGADIKVGIIGKPNSGKSTLINYLSGNEIAIVSDQPGTTRDFIKTKFTR 218 Query: 265 EGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311 G + ++ DTAGIR ++IVE + R ++ D++ LL ++ K Sbjct: 219 NGKVFEVVDTAGIRRRARVNEIVEYYSVNRALKVIDMVDIVFLLIDVQEK 268 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 48/89 (53%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K++I+G N GKS+LFN + +I G TRD++ ++ + K+ DT G Sbjct: 6 KVLIVGRPNVGKSALFNRILDTKRSITESTYGVTRDLVEEVCKVDSFKFKLIDTGGFTIL 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN 309 D + K +++ +E DLILL+ +IN Sbjct: 66 KDEISKIVVQKVLSSLEKVDLILLVLDIN 94 >gi|167587055|ref|ZP_02379443.1| GTP-binding protein EngA [Burkholderia ubonensis Bu] Length = 445 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 36/100 (36%), Positives = 61/100 (61%), Gaps = 5/100 (5%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G KI I+G N GKS+L N L +D I D+PGTTRD + +D + G + DTAG+R Sbjct: 179 GTKIAIVGRPNVGKSTLVNTLIGEDRVIAFDMPGTTRDSIYVDFERNGKPYTLIDTAGLR 238 Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + +EK + +T + +A++++LL ++++++IS Sbjct: 239 RRGKVFEAIEKFSVVKTLQSIADANVVILL--LDARQDIS 276 Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 9/89 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L + A+V D+PG TRD + + + DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGERPYLVVDTGGF---- 60 Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305 + V K+GI ++T VE AD+++ + Sbjct: 61 EPVAKDGILHEMARQTRQAVEEADVVVFI 89 >gi|300312253|ref|YP_003776345.1| GTP-binding protein [Herbaspirillum seropedicae SmR1] gi|300075038|gb|ADJ64437.1| GTP-binding protein [Herbaspirillum seropedicae SmR1] Length = 447 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 38/101 (37%), Positives = 61/101 (60%), Gaps = 5/101 (4%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 G KI I+G N GKS+L N L ++ I D+PGTTRD + I + EG + DTAGI Sbjct: 179 RGTKIAIVGRPNVGKSTLVNTLLGEERVIAFDMPGTTRDSIEIPFEREGRHYTLIDTAGI 238 Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 R + +EK + +T + +A+++LLL ++++++IS Sbjct: 239 RRRGKVFEAIEKFSVVKTLKSISDANVVLLL--LDAQQDIS 277 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 9/89 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L + A+V D+PG TRD + + + DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGERPFLVIDTGGF---- 60 Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305 + V K+GI K+T V AD+++ + Sbjct: 61 EPVAKDGIMYEMAKQTKQAVVEADVVVFI 89 >gi|134277744|ref|ZP_01764459.1| GTP-binding protein EngA [Burkholderia pseudomallei 305] gi|226197301|ref|ZP_03792878.1| ribosome-associated GTPase EngA [Burkholderia pseudomallei Pakistan 9] gi|134251394|gb|EBA51473.1| GTP-binding protein EngA [Burkholderia pseudomallei 305] gi|225930680|gb|EEH26690.1| ribosome-associated GTPase EngA [Burkholderia pseudomallei Pakistan 9] Length = 433 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 36/100 (36%), Positives = 61/100 (61%), Gaps = 5/100 (5%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G KI I+G N GKS+L N L +D I D+PGTTRD + +D + G + DTAG+R Sbjct: 167 GIKIAIVGRPNVGKSTLVNTLIGEDRVIAFDMPGTTRDSIYVDFERNGKHYTLIDTAGLR 226 Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + +EK + +T + +A++++LL ++++++IS Sbjct: 227 RRGKVFEAIEKFSVVKTLQSISDANVVILL--LDARQDIS 264 Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 9/80 (11%) Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGI- 289 GKS+LFN L + A+V D+PG TRD + + + DT G + V K+GI Sbjct: 2 GKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGARPYLVVDTGGF----EPVAKDGIL 57 Query: 290 ----KRTFLEVENADLILLL 305 ++T VE AD+++ + Sbjct: 58 HEMARQTRQAVEEADVVVFI 77 >gi|83652896|gb|ABC36959.1| GTPase family protein [Burkholderia thailandensis E264] Length = 460 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 36/101 (35%), Positives = 61/101 (60%), Gaps = 5/101 (4%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 G KI I+G N GKS+L N L +D I D+PGTTRD + +D + G + DTAG+ Sbjct: 193 RGIKIAIVGRPNVGKSTLVNTLIGEDRVIAFDMPGTTRDSIYVDFERNGKQYTLIDTAGL 252 Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 R + +EK + +T + +A++++LL ++++++IS Sbjct: 253 RRRGKVFEAIEKFSVVKTLQSISDANVVILL--LDAQQDIS 291 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 9/89 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L + A+V D+PG TRD + + + DT G Sbjct: 20 IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGARPYLVVDTGGF---- 75 Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305 + V K+GI ++T VE AD+++ + Sbjct: 76 EPVAKDGILHEMARQTRQAVEEADVVVFI 104 >gi|53719151|ref|YP_108137.1| GTP-binding protein EngA [Burkholderia pseudomallei K96243] gi|124383522|ref|YP_001026075.1| GTP-binding protein EngA [Burkholderia mallei NCTC 10229] gi|126439512|ref|YP_001059220.1| GTP-binding protein EngA [Burkholderia pseudomallei 668] gi|126449445|ref|YP_001080656.1| GTP-binding protein EngA [Burkholderia mallei NCTC 10247] gi|126454834|ref|YP_001066487.1| GTP-binding protein EngA [Burkholderia pseudomallei 1106a] gi|161579520|ref|YP_103001.2| GTP-binding protein EngA [Burkholderia mallei ATCC 23344] gi|162210023|ref|YP_333745.2| GTP-binding protein EngA [Burkholderia pseudomallei 1710b] gi|167719273|ref|ZP_02402509.1| GTP-binding protein EngA [Burkholderia pseudomallei DM98] gi|167738270|ref|ZP_02411044.1| GTP-binding protein EngA [Burkholderia pseudomallei 14] gi|167815459|ref|ZP_02447139.1| GTP-binding protein EngA [Burkholderia pseudomallei 91] gi|167823871|ref|ZP_02455342.1| GTP-binding protein EngA [Burkholderia pseudomallei 9] gi|167845410|ref|ZP_02470918.1| GTP-binding protein EngA [Burkholderia pseudomallei B7210] gi|167902402|ref|ZP_02489607.1| GTP-binding protein EngA [Burkholderia pseudomallei NCTC 13177] gi|167910644|ref|ZP_02497735.1| GTP-binding protein EngA [Burkholderia pseudomallei 112] gi|167918673|ref|ZP_02505764.1| GTP-binding protein EngA [Burkholderia pseudomallei BCC215] gi|254177966|ref|ZP_04884621.1| GTPase family protein [Burkholderia mallei ATCC 10399] gi|254189054|ref|ZP_04895565.1| GTP-binding protein EngA [Burkholderia pseudomallei Pasteur 52237] gi|254259698|ref|ZP_04950752.1| ribosome-associated GTPase EngA [Burkholderia pseudomallei 1710a] gi|254297432|ref|ZP_04964885.1| GTP-binding protein EngA [Burkholderia pseudomallei 406e] gi|254358306|ref|ZP_04974579.1| GTP-binding protein EngA [Burkholderia mallei 2002721280] gi|81824774|sp|Q63US9|DER_BURPS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|166224313|sp|A3MK70|DER_BURM7 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|166224314|sp|A2S2A6|DER_BURM9 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|166224315|sp|A3NVW6|DER_BURP0 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|166224316|sp|A3NA49|DER_BURP6 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|52209565|emb|CAH35518.1| putative GTPase [Burkholderia pseudomallei K96243] gi|124291542|gb|ABN00811.1| ribosome-associated GTPase EngA [Burkholderia mallei NCTC 10229] gi|126219005|gb|ABN82511.1| ribosome-associated GTPase EngA [Burkholderia pseudomallei 668] gi|126228476|gb|ABN92016.1| ribosome-associated GTPase EngA [Burkholderia pseudomallei 1106a] gi|126242315|gb|ABO05408.1| ribosome-associated GTPase EngA [Burkholderia mallei NCTC 10247] gi|148027433|gb|EDK85454.1| GTP-binding protein EngA [Burkholderia mallei 2002721280] gi|157808014|gb|EDO85184.1| GTP-binding protein EngA [Burkholderia pseudomallei 406e] gi|157936733|gb|EDO92403.1| GTP-binding protein EngA [Burkholderia pseudomallei Pasteur 52237] gi|160699005|gb|EDP88975.1| GTPase family protein [Burkholderia mallei ATCC 10399] gi|254218387|gb|EET07771.1| ribosome-associated GTPase EngA [Burkholderia pseudomallei 1710a] Length = 445 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 36/100 (36%), Positives = 61/100 (61%), Gaps = 5/100 (5%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G KI I+G N GKS+L N L +D I D+PGTTRD + +D + G + DTAG+R Sbjct: 179 GIKIAIVGRPNVGKSTLVNTLIGEDRVIAFDMPGTTRDSIYVDFERNGKHYTLIDTAGLR 238 Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + +EK + +T + +A++++LL ++++++IS Sbjct: 239 RRGKVFEAIEKFSVVKTLQSISDANVVILL--LDARQDIS 276 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 9/89 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L + A+V D+PG TRD + + + DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGARPYLVVDTGGF---- 60 Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305 + V K+GI ++T VE AD+++ + Sbjct: 61 EPVAKDGILHEMARQTRQAVEEADVVVFI 89 >gi|300704410|ref|YP_003746013.1| GTPase [Ralstonia solanacearum CFBP2957] gi|299072074|emb|CBJ43406.1| GTPase involved in ribosome synthesis and maintenance [Ralstonia solanacearum CFBP2957] Length = 447 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 35/101 (34%), Positives = 64/101 (63%), Gaps = 5/101 (4%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 +G +I I+G N GKS+L NAL ++ I D+PGTTRD + +D + G + DTAG+ Sbjct: 179 HGTRIAIVGRPNVGKSTLVNALIGEERVIAFDMPGTTRDAIYVDFERNGKPYTLIDTAGL 238 Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 R+ + +EK + +T + +A++++LL ++++++IS Sbjct: 239 RKRGKVFEAIEKFSVVKTLQSIADANVVVLL--LDAQQDIS 277 Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 9/89 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L + A+V D+PG TRD + + DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVADMPGLTRDRHYGEGRVGERPFIAIDTGGF---- 60 Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305 + V KEGI K+T V AD+++ + Sbjct: 61 EPVAKEGIVAEMAKQTRQAVVEADVVIFI 89 >gi|254179556|ref|ZP_04886155.1| GTP-binding protein EngA [Burkholderia pseudomallei 1655] gi|184210096|gb|EDU07139.1| GTP-binding protein EngA [Burkholderia pseudomallei 1655] Length = 445 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 36/100 (36%), Positives = 61/100 (61%), Gaps = 5/100 (5%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G KI I+G N GKS+L N L +D I D+PGTTRD + +D + G + DTAG+R Sbjct: 179 GIKIAIVGRPNVGKSTLVNTLIGEDRVIAFDMPGTTRDSIYVDFERNGKHYTLIDTAGLR 238 Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + +EK + +T + +A++++LL ++++++IS Sbjct: 239 RRGKVFEAIEKFSVVKTLQSISDANVVILL--LDARQDIS 276 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 9/89 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L + A+V D+PG TRD + + + DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGARPYLVVDTGGF---- 60 Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305 + V K+GI ++T VE AD+++ + Sbjct: 61 EPVAKDGILHEMARQTRQAVEEADVVVFI 89 >gi|223937585|ref|ZP_03629488.1| small GTP-binding protein [bacterium Ellin514] gi|223893748|gb|EEF60206.1| small GTP-binding protein [bacterium Ellin514] Length = 519 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 39/104 (37%), Positives = 62/104 (59%), Gaps = 7/104 (6%) Query: 209 QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL 268 +GK ++ K+ I+G N GKSS+ NAL + + IV+ IPGTTRD + + ++E Sbjct: 190 EGKTKSELKGPLKLAIVGRPNVGKSSIINALTQSERVIVSPIPGTTRDAVDVPFEVEADG 249 Query: 269 VKIS----DTAGIRET---DDIVEKEGIKRTFLEVENADLILLL 305 ++ S DTAG+R++ DD VE +KRT + AD+ +L+ Sbjct: 250 IRQSYLLIDTAGLRKSRRVDDSVEFYSVKRTEDSIARADICVLV 293 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 34/93 (36%), Positives = 56/93 (60%), Gaps = 5/93 (5%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI---- 277 I I+G N GKS+LFN +A + +AIV D+PG TRD ++ +++ G+ + DT GI Sbjct: 5 IAIVGRPNVGKSALFNRIAGRRIAIVHDMPGVTRDRVSAEVEWGGHAFTLVDTGGIGLLR 64 Query: 278 RE-TDDIVEKEGIKRTFLEVENADLILLLKEIN 309 RE D++ K +++ L +E A +I+L + Sbjct: 65 REKAADVITKAALEQVDLAIEAAHVIILAANVQ 97 >gi|167893952|ref|ZP_02481354.1| GTP-binding protein EngA [Burkholderia pseudomallei 7894] Length = 454 Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 36/100 (36%), Positives = 61/100 (61%), Gaps = 5/100 (5%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G KI I+G N GKS+L N L +D I D+PGTTRD + +D + G + DTAG+R Sbjct: 167 GIKIAIVGRPNVGKSTLVNTLIGEDRVIAFDMPGTTRDSIYVDFERNGKHYTLIDTAGLR 226 Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + +EK + +T + +A++++LL ++++++IS Sbjct: 227 RRGKVFEAIEKFSVVKTLQSISDANVVILL--LDARQDIS 264 Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 9/80 (11%) Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGI- 289 GKS+LFN L + A+V D+PG TRD + + + DT G + V K+GI Sbjct: 2 GKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGARPYLVVDTGGF----EPVAKDGIL 57 Query: 290 ----KRTFLEVENADLILLL 305 ++T VE AD+++ + Sbjct: 58 HEMARQTRQAVEEADVVVFI 77 >gi|223888990|ref|ZP_03623581.1| ribosome-associated GTPase EngA [Borrelia burgdorferi 64b] gi|223885806|gb|EEF56905.1| ribosome-associated GTPase EngA [Borrelia burgdorferi 64b] Length = 433 Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 3/94 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 K+ I+G N+GKS+L N L+ ++AIV+D PGTTRD + G + ++ DTAGIR Sbjct: 175 KVGIIGKPNSGKSTLINYLSGNEIAIVSDQPGTTRDFIKTKFTRNGKVFEVVDTAGIRRR 234 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311 ++IVE + R ++ D++ LL ++ K Sbjct: 235 ARVNEIVEYYSVNRALKVIDMVDIVFLLIDVQEK 268 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 48/89 (53%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K++I+G N GKS+LFN + +I G TRD++ ++ + K+ DT G Sbjct: 6 KVLIVGRPNVGKSALFNRILDTKRSITESAYGVTRDLVEEVCKVDSFKFKLIDTGGFTIL 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN 309 D + K +++ +E DLILL+ +IN Sbjct: 66 KDEISKIVVQKVLSSLEKVDLILLVLDIN 94 >gi|224533510|ref|ZP_03674099.1| ribosome-associated GTPase EngA [Borrelia burgdorferi CA-11.2a] gi|224513183|gb|EEF83545.1| ribosome-associated GTPase EngA [Borrelia burgdorferi CA-11.2a] Length = 433 Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 3/94 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 K+ I+G N+GKS+L N L+ ++AIV+D PGTTRD + G + ++ DTAGIR Sbjct: 175 KVGIIGKPNSGKSTLINYLSGNEIAIVSDQPGTTRDFIKTKFTRNGKVFEVVDTAGIRRR 234 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311 ++IVE + R ++ D++ LL ++ K Sbjct: 235 ARVNEIVEYYSVNRALKVIDMVDIVFLLIDVQEK 268 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 48/89 (53%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K++I+G N GKS+LFN + +I G TRD++ ++ + K+ DT G Sbjct: 6 KVLIVGRPNVGKSALFNRILDTKRSITESTYGVTRDLVEEVCKVDSFKFKLIDTGGFTIL 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN 309 D + K +++ +E DLILL+ +IN Sbjct: 66 KDEISKIVVQKVLSSLEKVDLILLVLDIN 94 >gi|216264686|ref|ZP_03436678.1| ribosome-associated GTPase EngA [Borrelia burgdorferi 156a] gi|215981159|gb|EEC21966.1| ribosome-associated GTPase EngA [Borrelia burgdorferi 156a] Length = 433 Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 3/94 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 K+ I+G N+GKS+L N L+ ++AIV+D PGTTRD + G + ++ DTAGIR Sbjct: 175 KVGIIGKPNSGKSTLINYLSGNEIAIVSDQPGTTRDFIKTKFTRNGKVFEVVDTAGIRRR 234 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311 ++IVE + R ++ D++ LL ++ K Sbjct: 235 ARVNEIVEYYSVNRALKVIDMVDIVFLLIDVQEK 268 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 48/89 (53%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K++I+G N GKS+LFN + +I G TRD++ ++ + K+ DT G Sbjct: 6 KVLIVGRPNVGKSALFNRILDTKRSITESTYGVTRDLVEEVCKVDSFKFKLIDTGGFTIL 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN 309 D + K +++ +E DLILL+ +IN Sbjct: 66 KDEISKIVVQKVLSSLEKVDLILLVLDIN 94 >gi|312148299|gb|ADQ30958.1| ribosome-associated GTPase EngA [Borrelia burgdorferi JD1] Length = 433 Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 3/94 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 K+ I+G N+GKS+L N L+ ++AIV+D PGTTRD + G + ++ DTAGIR Sbjct: 175 KVGIIGKPNSGKSTLINYLSGNEIAIVSDQPGTTRDFIKTKFTRNGKVFEVVDTAGIRRR 234 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311 ++IVE + R ++ D++ LL ++ K Sbjct: 235 ARVNEIVEYYSVNRALKVIDMVDIVFLLIDVQEK 268 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 48/89 (53%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K++I+G N GKS+LFN + +I G TRD++ ++ + K+ DT G Sbjct: 6 KVLIVGRPNVGKSALFNRILDIKRSITESTYGVTRDLVEEVCKVDSFKFKLIDTGGFTIL 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN 309 D + K +++ +E DLILL+ +IN Sbjct: 66 KDEISKIVVQKVLSSLEKVDLILLVLDIN 94 >gi|15594853|ref|NP_212642.1| GTP-binding protein EngA [Borrelia burgdorferi B31] gi|218249913|ref|YP_002375018.1| ribosome-associated GTPase EngA [Borrelia burgdorferi ZS7] gi|221218131|ref|ZP_03589597.1| ribosome-associated GTPase EngA [Borrelia burgdorferi 72a] gi|224532891|ref|ZP_03673503.1| ribosome-associated GTPase EngA [Borrelia burgdorferi WI91-23] gi|225548736|ref|ZP_03769783.1| ribosome-associated GTPase EngA [Borrelia burgdorferi 94a] gi|225549607|ref|ZP_03770573.1| ribosome-associated GTPase EngA [Borrelia burgdorferi 118a] gi|226321818|ref|ZP_03797344.1| ribosome-associated GTPase EngA [Borrelia burgdorferi Bol26] gi|8134424|sp|O51461|DER_BORBU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|2688422|gb|AAC66872.1| GTP-binding protein [Borrelia burgdorferi B31] gi|218165101|gb|ACK75162.1| ribosome-associated GTPase EngA [Borrelia burgdorferi ZS7] gi|221192079|gb|EEE18300.1| ribosome-associated GTPase EngA [Borrelia burgdorferi 72a] gi|224512167|gb|EEF82556.1| ribosome-associated GTPase EngA [Borrelia burgdorferi WI91-23] gi|225369884|gb|EEG99331.1| ribosome-associated GTPase EngA [Borrelia burgdorferi 118a] gi|225370766|gb|EEH00202.1| ribosome-associated GTPase EngA [Borrelia burgdorferi 94a] gi|226233007|gb|EEH31760.1| ribosome-associated GTPase EngA [Borrelia burgdorferi Bol26] Length = 433 Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 3/94 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 K+ I+G N+GKS+L N L+ ++AIV+D PGTTRD + G + ++ DTAGIR Sbjct: 175 KVGIIGKPNSGKSTLINYLSGNEIAIVSDQPGTTRDFIKTKFTRNGKVFEVVDTAGIRRR 234 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311 ++IVE + R ++ D++ LL ++ K Sbjct: 235 ARVNEIVEYYSVNRALKVIDMVDIVFLLIDVQEK 268 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 48/89 (53%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K++I+G N GKS+LFN + +I G TRD++ ++ + K+ DT G Sbjct: 6 KVLIVGRPNVGKSALFNRILDTKRSITESTYGVTRDLVEEVCKVDSFKFKLIDTGGFTIL 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN 309 D + K +++ +E DLILL+ +IN Sbjct: 66 KDEISKIVVQKVLSSLEKVDLILLVLDIN 94 >gi|161723167|ref|YP_442759.2| GTP-binding protein EngA [Burkholderia thailandensis E264] gi|167581710|ref|ZP_02374584.1| GTP-binding protein EngA [Burkholderia thailandensis TXDOH] gi|167619826|ref|ZP_02388457.1| GTP-binding protein EngA [Burkholderia thailandensis Bt4] gi|257138969|ref|ZP_05587231.1| GTP-binding protein EngA [Burkholderia thailandensis E264] Length = 445 Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 36/100 (36%), Positives = 61/100 (61%), Gaps = 5/100 (5%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G KI I+G N GKS+L N L +D I D+PGTTRD + +D + G + DTAG+R Sbjct: 179 GIKIAIVGRPNVGKSTLVNTLIGEDRVIAFDMPGTTRDSIYVDFERNGKQYTLIDTAGLR 238 Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + +EK + +T + +A++++LL ++++++IS Sbjct: 239 RRGKVFEAIEKFSVVKTLQSISDANVVILL--LDAQQDIS 276 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 9/89 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L + A+V D+PG TRD + + + DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGARPYLVVDTGGF---- 60 Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305 + V K+GI ++T VE AD+++ + Sbjct: 61 EPVAKDGILHEMARQTRQAVEEADVVVFI 89 >gi|167836401|ref|ZP_02463284.1| GTP-binding protein EngA [Burkholderia thailandensis MSMB43] Length = 445 Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 36/100 (36%), Positives = 61/100 (61%), Gaps = 5/100 (5%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G KI I+G N GKS+L N L +D I D+PGTTRD + +D + G + DTAG+R Sbjct: 179 GTKIAIVGRPNVGKSTLVNTLIGEDRVIAFDMPGTTRDSIYVDFERNGKQYTLIDTAGLR 238 Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + +EK + +T + +A++++LL ++++++IS Sbjct: 239 RRGKVFEAIEKFSVVKTLQSISDANVVILL--LDAQQDIS 276 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 9/89 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L + A+V D+PG TRD + + + DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGARPYLVVDTGGF---- 60 Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305 + V K+GI ++T VE AD+++ + Sbjct: 61 EPVAKDGILHEMARQTRQAVEEADVVVFI 89 >gi|289433056|ref|YP_003462929.1| ribosome-associated GTPase EngA [Dehalococcoides sp. GT] gi|288946776|gb|ADC74473.1| ribosome-associated GTPase EngA [Dehalococcoides sp. GT] Length = 442 Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 55/88 (62%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ ++G +N GKS+L N ++ ++V++IPGTTRD + LD +G V + DTAGIR Sbjct: 182 KLALVGRTNVGKSTLLNTFLGEERSVVSNIPGTTRDAIDTPLDFDGTNVLLIDTAGIRRR 241 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + VEK + R ++ AD++LL+ Sbjct: 242 GKVESGVEKYSVLRALKAIDRADVVLLV 269 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 84/171 (49%), Gaps = 22/171 (12%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RET 280 I I+G N GKS+L N LA K++AI D+PGTTRD L + + + DT G+ + Sbjct: 9 IAIVGRQNVGKSTLLNRLAHKNLAITEDLPGTTRDRLFATVSWLDRRLIMVDTGGLDPDI 68 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS--------KKEISFPKNIDFIFIGTKSD-- 330 + ++ ++ + L ++ ADL+LL+ ++ +I I + K+D Sbjct: 69 ESVIGQQVNIQISLAIKEADLVLLVVDVKDGLITPDYEMADIIRRTGKPVILVANKADNL 128 Query: 331 -LYSTYTEEYD------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374 + TE Y +IS+F G G+ +L++++ L ++ P + P Sbjct: 129 KMGQEATEFYSLGFGEPAVISAFHGTGISDLMDRVLEELPDQ----PIATP 175 >gi|238027075|ref|YP_002911306.1| GTP-binding protein EngA [Burkholderia glumae BGR1] gi|237876269|gb|ACR28602.1| GTPase family protein [Burkholderia glumae BGR1] Length = 448 Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 36/100 (36%), Positives = 61/100 (61%), Gaps = 5/100 (5%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G KI I+G N GKS+L N L +D I D+PGTTRD + +D + G + DTAG+R Sbjct: 179 GVKIAIVGRPNVGKSTLVNTLIGEDRVIAFDMPGTTRDSIYVDFERNGKPYTLIDTAGLR 238 Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + +EK + +T + +A++++LL ++++++IS Sbjct: 239 RRGKVFEAIEKFSVVKTLQSISDANVVILL--LDAQQDIS 276 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 9/89 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L + A+V D+PG TRD + + DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRTGARPYLVVDTGGF---- 60 Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305 + V K+GI ++T VE AD+++ + Sbjct: 61 EPVAKDGILHEMARQTRQAVEEADVVVFI 89 >gi|291288774|ref|YP_003505590.1| ribosome-associated GTPase EngA [Denitrovibrio acetiphilus DSM 12809] gi|290885934|gb|ADD69634.1| ribosome-associated GTPase EngA [Denitrovibrio acetiphilus DSM 12809] Length = 450 Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 49/156 (31%), Positives = 82/156 (52%), Gaps = 17/156 (10%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 + + I+G N GKS+LFN LA K +AIV D+PG TRD + + EG +I DTAG Sbjct: 2 FTVGIIGRPNVGKSTLFNRLAGKRLAIVDDMPGVTRDRIEFTTEWEGEKFRIVDTAGFDL 61 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKE----INSKKEISFP----KNIDFIFIGTKSD- 330 +++V+KE ++ + ++ AD +L+ + ++ EI KN F + K D Sbjct: 62 KEELVKKEMQQQFYSALDEADYFILMADGTEGVHPLDEIVIDLLRHKNKPFQLVVNKVDS 121 Query: 331 ------LYSTYTEEYDHL--ISSFTGEGLEELINKI 358 +Y Y +H+ IS+ G ++ L+++I Sbjct: 122 DSKEDFIYDFYRMGVEHIIAISASHGRNVDMLLDEI 157 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/89 (42%), Positives = 50/89 (56%), Gaps = 4/89 (4%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KIV+ G N GKSS+ N ++ IVT IPGTTRD + +L+G + DTAGIR+ Sbjct: 176 KIVVTGRPNVGKSSMINKWLGEERLIVTPIPGTTRDAVDTFFELDGDKYVLIDTAGIRKK 235 Query: 281 ----DDIVEKEGIKRTFLEVENADLILLL 305 D +EK G R VE AD+ + L Sbjct: 236 KSMFKDKIEKYGYYRWKDAVERADISVCL 264 >gi|330817163|ref|YP_004360868.1| GTPase family protein [Burkholderia gladioli BSR3] gi|327369556|gb|AEA60912.1| GTPase family protein [Burkholderia gladioli BSR3] Length = 448 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 36/100 (36%), Positives = 61/100 (61%), Gaps = 5/100 (5%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G KI I+G N GKS+L N L +D I D+PGTTRD + +D + G + DTAG+R Sbjct: 179 GVKIAIVGRPNVGKSTLVNTLIGEDRVIAFDMPGTTRDSIYVDFERNGKPYTLIDTAGLR 238 Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + +EK + +T + +A++++LL ++++++IS Sbjct: 239 RRGKVFEAIEKFSVVKTLQSISDANVVILL--LDAQQDIS 276 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 9/89 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L + A+V D+PG TRD + + DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRAGARPYLVVDTGGF---- 60 Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305 + V K+GI ++T VE AD+++ + Sbjct: 61 EPVAKDGILHEMARQTRQAVEEADVVVFI 89 >gi|311105363|ref|YP_003978216.1| GTP-binding protein EngA [Achromobacter xylosoxidans A8] gi|310760052|gb|ADP15501.1| GTP-binding protein EngA [Achromobacter xylosoxidans A8] Length = 450 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 36/98 (36%), Positives = 61/98 (62%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N L ++ I D+PGTTRD + ID + +G + DTAG+R+ Sbjct: 186 KLAIVGRPNVGKSTLINTLMGEERVIAFDMPGTTRDAIEIDFERDGRRYTLIDTAGLRKR 245 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + VEK + +T +E ++++LL+ ++++ EIS Sbjct: 246 GKVFEAVEKFSVIKTLQAIEASNVVLLM--LDAQTEIS 281 Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 9/89 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D G TRD + + + DT G Sbjct: 7 VALVGRPNVGKSTLFNRLTRSRAALVADYSGLTRDRHYGEGRVGEIPFIVIDTGGF---- 62 Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305 + V K+GI ++T + AD+++ L Sbjct: 63 EPVAKDGILLEMARQTRQAIAEADVVVFL 91 >gi|260598897|ref|YP_003211468.1| GTP-binding protein Der [Cronobacter turicensis z3032] gi|260218074|emb|CBA32819.1| GTP-binding protein engA [Cronobacter turicensis z3032] Length = 492 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 37/98 (37%), Positives = 64/98 (65%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + +D +V D+PGTTRD + I ++ +G + DTAG+R+ Sbjct: 206 KLAIVGRPNVGKSTLTNRILGEDRVVVFDMPGTTRDSIYIPMERDGREFVLIDTAGVRKR 265 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D+VEK + +T +E+A+++LL+ I++++ IS Sbjct: 266 GKITDVVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 301 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG DT GI + Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGAE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE +++ L +E AD++L + Sbjct: 65 EGVETRMAEQSLLAIEEADVVLFM 88 >gi|302339695|ref|YP_003804901.1| ribosome-associated GTPase EngA [Spirochaeta smaragdinae DSM 11293] gi|301636880|gb|ADK82307.1| ribosome-associated GTPase EngA [Spirochaeta smaragdinae DSM 11293] Length = 453 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ +LG N GKS+L N L +DV+IV+D+PGTTRDV+ G I DTAGIR Sbjct: 194 RLALLGKPNTGKSTLANRLIGRDVSIVSDLPGTTRDVVESSFSYRGMNCTILDTAGIRRK 253 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E + R +E A ++LL+ Sbjct: 254 KKVGENIEYYSVNRALSAIEEAHVVLLM 281 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 52/88 (59%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L +K AI PG TRD + + L+ Y + I DT G + Sbjct: 18 IAVVGRPNVGKSTLFNRLVRKRRAITDPTPGVTRDSIEHEWILDPYALTIVDTGGFKVEG 77 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN 309 D ++++ +++ ++ ADLILLL ++ Sbjct: 78 DSLDEQVKEKSVSYLKRADLILLLMDVT 105 >gi|152978550|ref|YP_001344179.1| GTP-binding protein EngA [Actinobacillus succinogenes 130Z] gi|150840273|gb|ABR74244.1| small GTP-binding protein [Actinobacillus succinogenes 130Z] Length = 503 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 49/146 (33%), Positives = 79/146 (54%), Gaps = 22/146 (15%) Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232 E DFS+E D +L++ L +N H RN KI I+G N GK Sbjct: 185 EQGFDFSDENDT------ALLDEALEEENTKPDH----------RN-IKIAIVGRPNVGK 227 Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGI 289 S+L N + +D +V D+PGTTRD + I ++ +G I DTAG+R+ + VEK + Sbjct: 228 STLTNRILGEDRVVVYDLPGTTRDSIYIPMERDGQHYTIIDTAGVRKRGKVHLAVEKFSV 287 Query: 290 KRTFLEVENADLILLLKEINSKKEIS 315 +T +++A+++LL I++++ IS Sbjct: 288 IKTLQAIQDANVVLLT--IDAREGIS 311 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 86/168 (51%), Gaps = 24/168 (14%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++ GY + DT GI T+ Sbjct: 6 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQANISGYDFIVIDTGGIDGTE 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF------------IFIGTKS 329 + VE++ +++ L +E AD++L L ++++ ++ P +I I + K+ Sbjct: 66 EGVEEKMAEQSLLAIEEADVVLFL--VDARAGLT-PADIGIANYLRQRQSKTTIVVANKT 122 Query: 330 DL--YSTYTEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKK 368 D ++ E+ L I++ G G+ +L+ + + L+ K KK Sbjct: 123 DGIDADSHCAEFYQLGLGEITQIAAAQGRGVAQLMEAVLAPLAEKIKK 170 >gi|317403342|gb|EFV83855.1| GTP-binding protein engA [Achromobacter xylosoxidans C54] Length = 451 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 36/98 (36%), Positives = 61/98 (62%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N L ++ I D+PGTTRD + ID + +G + DTAG+R+ Sbjct: 187 KLAIVGRPNVGKSTLINTLMGEERVIAFDMPGTTRDAIEIDFERDGRRYTLIDTAGLRKR 246 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + VEK + +T +E ++++LL+ ++++ EIS Sbjct: 247 GKVFEAVEKFSVIKTLQAIEASNVVLLM--LDAQTEIS 282 Score = 39.7 bits (91), Expect = 0.97, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 9/89 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D G TRD + + + DT G Sbjct: 7 VALVGRPNVGKSTLFNRLTRSRAALVADFSGLTRDRHYGEGRVGEIPFIVIDTGGF---- 62 Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305 + V K+GI ++T + AD+++ L Sbjct: 63 EPVAKDGILLEMARQTRQAIAEADVVVFL 91 >gi|240146998|ref|ZP_04745599.1| ribosome-associated GTPase EngA [Roseburia intestinalis L1-82] gi|257200843|gb|EEU99127.1| ribosome-associated GTPase EngA [Roseburia intestinalis L1-82] gi|291535193|emb|CBL08305.1| ribosome-associated GTPase EngA [Roseburia intestinalis M50/1] gi|291539724|emb|CBL12835.1| ribosome-associated GTPase EngA [Roseburia intestinalis XB6B4] Length = 441 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 37/88 (42%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKSSL N LA++D IV+DI GTTRD + D+ G DTAG+R Sbjct: 179 KVAIIGKPNVGKSSLINKLAQEDRVIVSDIAGTTRDAIDTDIRYNGKEYVFIDTAGLRRK 238 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + I +E+ I R VE AD+ +++ Sbjct: 239 NKIKEEIERYSIIRAVTAVERADVCIIV 266 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 52/90 (57%), Gaps = 1/90 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFN LA + ++IV D PG TRD + D+ Y + DT GI ++ Sbjct: 6 VAIVGRPNVGKSTLFNVLAGERISIVKDTPGVTRDRIYADVTWLDYHFTMIDTGGIEPDS 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310 DI+ + ++ + + AD+I+ L ++ Sbjct: 66 KDIILSQMREQAEIAIATADVIIFLTDVRQ 95 >gi|300691802|ref|YP_003752797.1| GTPase involved in ribosome synthesis and maintenance [Ralstonia solanacearum PSI07] gi|299078862|emb|CBJ51523.1| GTPase involved in ribosome synthesis and maintenance [Ralstonia solanacearum PSI07] Length = 447 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 35/100 (35%), Positives = 63/100 (63%), Gaps = 5/100 (5%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G +I I+G N GKS+L NAL ++ I D+PGTTRD + +D + G + DTAG+R Sbjct: 180 GTRIAIVGRPNVGKSTLVNALIGEERVIAFDMPGTTRDAIYVDFERNGKPYTLIDTAGLR 239 Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + + +EK + +T + +A++++LL ++++++IS Sbjct: 240 KRGKVFEAIEKFSVVKTLQSIADANVVVLL--LDAQQDIS 277 Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust. Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 9/89 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L + A+V DIPG TRD + + DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVADIPGLTRDRHYGEGRVGERPFIAIDTGGF---- 60 Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305 + V KEGI K+T V AD+++ + Sbjct: 61 EPVAKEGIVAEMAKQTRQAVVEADVVIFI 89 >gi|195941645|ref|ZP_03087027.1| GTP-binding protein EngA [Borrelia burgdorferi 80a] gi|312149483|gb|ADQ29554.1| ribosome-associated GTPase EngA [Borrelia burgdorferi N40] Length = 433 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 3/94 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 K+ I+G N+GKS+L N L+ ++AIV+D PGTTRD + G + ++ DTAGIR Sbjct: 175 KVGIIGKPNSGKSTLINYLSGNEIAIVSDQPGTTRDFIKTKFARNGKVFEVVDTAGIRRR 234 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311 ++IVE + R ++ D++ LL ++ K Sbjct: 235 ARVNEIVEYYSVNRALKVIDMVDIVFLLIDVQEK 268 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 48/89 (53%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K++I+G N GKS+LFN + +I G TRD++ ++ + K+ DT G Sbjct: 6 KVLIVGRPNVGKSALFNRILDTKRSITESTYGVTRDLVEEVCKVDSFKFKLIDTGGFTIL 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN 309 D + K +++ +E DLILL+ +IN Sbjct: 66 KDEISKIVVQKVLSSLEKVDLILLVLDIN 94 >gi|156932946|ref|YP_001436862.1| GTP-binding protein EngA [Cronobacter sakazakii ATCC BAA-894] gi|166198713|sp|A7MGU7|DER_ENTS8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|156531200|gb|ABU76026.1| hypothetical protein ESA_00749 [Cronobacter sakazakii ATCC BAA-894] Length = 492 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 37/98 (37%), Positives = 64/98 (65%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + +D +V D+PGTTRD + I ++ +G + DTAG+R+ Sbjct: 206 KLAIVGRPNVGKSTLTNRILGEDRVVVFDMPGTTRDSIYIPMERDGREFVLIDTAGVRKR 265 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D+VEK + +T +E+A+++LL+ I++++ IS Sbjct: 266 GKITDVVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 301 Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG DT GI ++ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGSE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE +++ L +E AD++L + Sbjct: 65 EGVETRMAEQSLLAIEEADVVLFM 88 >gi|254228662|ref|ZP_04922086.1| GTP-binding protein EngA [Vibrio sp. Ex25] gi|262395114|ref|YP_003286968.1| GTP-binding protein EngA [Vibrio sp. Ex25] gi|151938841|gb|EDN57675.1| GTP-binding protein EngA [Vibrio sp. Ex25] gi|262338708|gb|ACY52503.1| GTP-binding protein EngA [Vibrio sp. Ex25] Length = 498 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 58/223 (26%), Positives = 105/223 (47%), Gaps = 37/223 (16%) Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 E ED+ F +E L + D + ++ + + K+ I+G N GKS+L N + Sbjct: 176 EIEDLTGFEDEEPLVE------DYTEEDAEAEFKRLQEQPIKLAIIGRPNVGKSTLTNRI 229 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEV 296 ++ +V D+PGTTRD + I ++ +G + DTAG+R ++ VEK + +T V Sbjct: 230 LGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRRRGRINETVEKFSVVKTLKAV 289 Query: 297 ENADLILLLKEINSKKEIS--------FPKNIDFIFI-------GTKSDLYSTYTEEYD- 340 E+A+++LL+ I++++ IS F N + G SD+ + +E D Sbjct: 290 EDANVVLLV--IDARENISDQDLSLLGFALNAGRSIVIAVNKWDGLDSDVKESVKKELDR 347 Query: 341 ----------HLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373 H IS+ G G+ L I+ ++ ++ S+ Sbjct: 348 RLGFVDFARIHFISALHGTGVGHLFESIQEAYNSATTRVGTSV 390 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280 + ++G N GKS+LFN L + A+V D PG TRD L E + + DT GI T Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQARLGEEHEFIVIDTGGIDGT 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 ++ VE + +++ ++ AD++L L Sbjct: 65 EEGVETKMAEQSLAAIDEADVVLFL 89 >gi|146295934|ref|YP_001179705.1| small GTP-binding protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|166224318|sp|A4XHX9|DER_CALS8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|145409510|gb|ABP66514.1| small GTP-binding protein [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 440 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 37/106 (34%), Positives = 62/106 (58%), Gaps = 3/106 (2%) Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262 + S+ + + EI + K+ I+G N GKSSL N + ++ IV+DIPGTTRD + + Sbjct: 160 VVSYFDKVGINEIEEDSIKVAIIGKPNTGKSSLVNYILGEERVIVSDIPGTTRDAIDSYV 219 Query: 263 DLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305 + EG + + DTAG+R I +E+ + RT +E +D+ ++L Sbjct: 220 EFEGIPLTLIDTAGLRRKSKIYDNIERYSMLRTISAIERSDICVIL 265 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 49/85 (57%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280 + I+G N GKS+LFN L + AIV D PG TRD + + + G + DT GI + Sbjct: 6 VAIVGRPNVGKSTLFNRLIGERRAIVDDTPGITRDRIVGETEWRGITFNVIDTGGIEPYS 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 +DI+ K+ ++ ++ +D+I+ + Sbjct: 66 EDIILKQMRRQAQFAIDMSDVIIFM 90 >gi|167630055|ref|YP_001680554.1| GTP-binding protein [Heliobacterium modesticaldum Ice1] gi|238687893|sp|B0TFW3|DER_HELMI RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|167592795|gb|ABZ84543.1| GTP-binding protein [Heliobacterium modesticaldum Ice1] Length = 442 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 55/88 (62%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI ++G N GKSSL NA+ ++ IV+DIPGTTRD + D +G + DTAG+R Sbjct: 179 KIAVIGRPNVGKSSLVNAILGQERVIVSDIPGTTRDAIDTAFDRDGKRYILIDTAGMRRK 238 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLL 305 ++ VE+ + R+ ++ +D++L++ Sbjct: 239 GRIEEAVERYSVMRSLRAIDRSDVVLMV 266 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/90 (37%), Positives = 45/90 (50%), Gaps = 10/90 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN L VAIV D PG TRD L D + + DT G+ Sbjct: 6 VAIVGRPNVGKSTLFNRLTGGRVAIVEDQPGVTRDRLYRDANWLDREFTVVDTGGL---- 61 Query: 282 DIVEKEGI------KRTFLEVENADLILLL 305 D ++E K+ +E AD+IL L Sbjct: 62 DFGDRENPFSAIIHKQAEAAMEEADVILFL 91 >gi|15601970|ref|NP_245042.1| GTP-binding protein EngA [Pasteurella multocida subsp. multocida str. Pm70] gi|13431507|sp|P57812|DER_PASMU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|12720316|gb|AAK02189.1| unknown [Pasteurella multocida subsp. multocida str. Pm70] Length = 510 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 88/183 (48%), Gaps = 33/183 (18%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI I+G N GKS+L N + +D +V D+PGTTRD + I ++ +G I DTAG+R+ Sbjct: 223 KIAIVGRPNVGKSTLTNRILGEDRVVVYDLPGTTRDSIYIPMERDGQHYTIIDTAGVRKR 282 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNIDFI----------- 323 + VEK + +T +++A+++LL +E S +++S + FI Sbjct: 283 GKVHLAVEKFSVIKTLQAIQDANVVLLTIDAREGVSDQDLSL---LGFILNAGRSLVIVV 339 Query: 324 --FIGTKSDLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLP 370 + G D+ E D H IS+ G G+ L + I+ + +K+ Sbjct: 340 NKWDGLNQDIKDQVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSIQEAYACATQKMT 399 Query: 371 FSI 373 S+ Sbjct: 400 TSM 402 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 51/84 (60%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++ GY + DT GI T+ Sbjct: 6 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQANIAGYDFIVIDTGGIDGTE 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE++ +++ L +E AD++L L Sbjct: 66 EGVEEKMAEQSLLAIEEADVVLFL 89 >gi|160892719|ref|ZP_02073509.1| hypothetical protein CLOL250_00249 [Clostridium sp. L2-50] gi|156865760|gb|EDO59191.1| hypothetical protein CLOL250_00249 [Clostridium sp. L2-50] Length = 440 Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 55/88 (62%), Gaps = 1/88 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFNALA + ++IV D PG TRD + D+ Y I DT GI E+ Sbjct: 6 VAIVGRPNVGKSTLFNALAGEKISIVKDTPGVTRDRIYADVSWLDYNFTIIDTGGIEPES 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308 D+I+ K ++ + +E AD+I+ + ++ Sbjct: 66 DNIILKSMREQAEIAIETADVIIFMTDV 93 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/108 (33%), Positives = 57/108 (52%), Gaps = 3/108 (2%) Query: 201 NDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260 +++ SH + E + +I I+G N GKSS+ N L ++ IV+DI GTTRD + Sbjct: 159 DEVVSHFDEDSKNEEEDDRPRIAIIGKPNVGKSSIINKLLGENRVIVSDIAGTTRDAIDT 218 Query: 261 DLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305 ++ G DTAG+R I +E+ I RT VE ++ +L+ Sbjct: 219 EIVRNGTEYVFIDTAGLRRKSKIKEDIERYSIIRTVSAVERCNVAVLV 266 >gi|163813998|ref|ZP_02205391.1| hypothetical protein COPEUT_00150 [Coprococcus eutactus ATCC 27759] gi|158450692|gb|EDP27687.1| hypothetical protein COPEUT_00150 [Coprococcus eutactus ATCC 27759] Length = 445 Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 55/88 (62%), Gaps = 1/88 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFN LA + ++IV D PG TRD + D++ Y + DT GI ET Sbjct: 11 VAIVGRPNVGKSTLFNVLAGEKISIVQDTPGVTRDRIYADINWLDYNFTLIDTGGIEPET 70 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308 D+I+ K ++ + +E AD+I+ + ++ Sbjct: 71 DNIILKSMREQAEIAIETADVIIFMTDV 98 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 41/121 (33%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247 SS+ + D+L +++ SH + E+ +I I+G N GKSS+ N L +D IV Sbjct: 154 SSRLGIGDML---DEVVSHFDESAKEEVEDERPRIAIIGKPNVGKSSIINKLLGEDRVIV 210 Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILL 304 +DI GTTRD + ++ G DTAG+R+ I +E+ I RT VE ++ +L Sbjct: 211 SDIAGTTRDAIDTEVVRNGREYVFIDTAGLRKKSKIKEDIERYSIIRTVSAVERCNVAVL 270 Query: 305 L 305 + Sbjct: 271 V 271 >gi|219669400|ref|YP_002459835.1| GTP-binding protein EngA [Desulfitobacterium hafniense DCB-2] gi|254783150|sp|B8G2P9|DER_DESHD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|219539660|gb|ACL21399.1| small GTP-binding protein [Desulfitobacterium hafniense DCB-2] Length = 441 Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 38/110 (34%), Positives = 64/110 (58%), Gaps = 3/110 (2%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L +++ SH + E+ + +I ++G N GKSSL N L ++ IV++IPGTTRD + Sbjct: 156 LLDEVVSHFPEDIEEEVDPDTIRIAVVGRPNVGKSSLVNTLLGEERVIVSNIPGTTRDAI 215 Query: 259 TIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLL 305 + EG I DTAG+R +++ E+ + R+ V+ +D+IL+L Sbjct: 216 DSAFEHEGKHYIIIDTAGMRRKGRIEELTEQYSVSRSLRAVDRSDVILML 265 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 2/86 (2%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN LA VAIV + PG TRD L D + G I DT GI + Sbjct: 6 VAIVGRPNVGKSTLFNRLAGGLVAIVENRPGVTRDRLYRDSEWLGRKFTIIDTGGIEFVN 65 Query: 282 D--IVEKEGIKRTFLEVENADLILLL 305 + + + ++ + +E AD+I+ + Sbjct: 66 ENTSISAQMRRQAEIAIEEADVIVFV 91 >gi|111115337|ref|YP_709955.1| GTP-binding protein EngA [Borrelia afzelii PKo] gi|122956350|sp|Q0SMZ9|DER_BORAP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|110890611|gb|ABH01779.1| GTP-binding protein [Borrelia afzelii PKo] Length = 433 Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 38/98 (38%), Positives = 61/98 (62%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 K+ I+G N+GKS+L N L+ +++IV+D PGTTRD + L G + +I DTAGIR Sbjct: 175 KVGIIGKPNSGKSTLINYLSGNEISIVSDKPGTTRDFIKTKLTRNGKVFEIIDTAGIRRR 234 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 ++IVE + R ++ D++ LL I+ K+E++ Sbjct: 235 ARVNEIVEYYSVNRALKVIDMVDIVFLL--IDVKEELT 270 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 48/89 (53%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K++I+G N GKS+LFN + +I + G TRD++ + + K+ DT G Sbjct: 6 KVLIVGRPNVGKSALFNRILDTKRSITENTYGVTRDLVEEVCKVGSFKFKLIDTGGFTIL 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN 309 D + K +++ +E DLILL+ ++N Sbjct: 66 KDEISKIVVQKVLSSLEKVDLILLVLDVN 94 >gi|89894997|ref|YP_518484.1| hypothetical protein DSY2251 [Desulfitobacterium hafniense Y51] gi|122482578|sp|Q24VA2|DER_DESHY RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|89334445|dbj|BAE84040.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 441 Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 38/110 (34%), Positives = 64/110 (58%), Gaps = 3/110 (2%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L +++ SH + E+ + +I ++G N GKSSL N L ++ IV++IPGTTRD + Sbjct: 156 LLDEVVSHFPEDIEEEVDPDTIRIAVVGRPNVGKSSLVNTLLGEERVIVSNIPGTTRDAI 215 Query: 259 TIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLL 305 + EG I DTAG+R +++ E+ + R+ V+ +D+IL+L Sbjct: 216 DSAFEHEGKHYIIIDTAGMRRKGRIEELTEQYSVSRSLRAVDRSDVILML 265 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 2/86 (2%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN LA VAIV + PG TRD L D + G I DT GI + Sbjct: 6 VAIVGRPNVGKSTLFNRLAGGLVAIVENRPGVTRDRLYRDSEWLGRKFTIIDTGGIEFVN 65 Query: 282 D--IVEKEGIKRTFLEVENADLILLL 305 + + + ++ + +E AD+I+ + Sbjct: 66 ENTPITAQMRRQAEIAIEEADVIVFV 91 >gi|91225135|ref|ZP_01260357.1| GTP-binding protein EngA [Vibrio alginolyticus 12G01] gi|269965174|ref|ZP_06179308.1| GTP-binding protein [Vibrio alginolyticus 40B] gi|91190078|gb|EAS76349.1| GTP-binding protein EngA [Vibrio alginolyticus 12G01] gi|269830160|gb|EEZ84387.1| GTP-binding protein [Vibrio alginolyticus 40B] Length = 498 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 58/223 (26%), Positives = 105/223 (47%), Gaps = 37/223 (16%) Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 E ED+ F +E L + D + ++ + + K+ I+G N GKS+L N + Sbjct: 176 EIEDLTGFEDEEPLVE------DYTEEDAEAEFKRLQEQPIKLAIIGRPNVGKSTLTNRI 229 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEV 296 ++ +V D+PGTTRD + I ++ +G + DTAG+R ++ VEK + +T V Sbjct: 230 LGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRRRGRINETVEKFSVVKTLKAV 289 Query: 297 ENADLILLLKEINSKKEIS--------FPKNIDFIFI-------GTKSDLYSTYTEEYD- 340 E+A+++LL+ I++++ IS F N + G SD+ + +E D Sbjct: 290 EDANVVLLV--IDARENISDQDLSLLGFALNAGRSIVIAVNKWDGLDSDVKESVKKELDR 347 Query: 341 ----------HLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373 H IS+ G G+ L I+ ++ ++ S+ Sbjct: 348 RLGFVDFARIHFISALHGTGVGHLFESIQEAYNSATTRVGTSV 390 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280 + ++G N GKS+LFN L + A+V D PG TRD L E + + DT GI T Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQARLGEEHEFIVIDTGGIDGT 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 ++ VE + +++ ++ AD++L L Sbjct: 65 EEGVETKMAEQSLAAIDEADVVLFL 89 >gi|33593199|ref|NP_880843.1| GTP-binding protein EngA [Bordetella pertussis Tohama I] gi|33597408|ref|NP_885051.1| GTP-binding protein EngA [Bordetella parapertussis 12822] gi|33602148|ref|NP_889708.1| GTP-binding protein EngA [Bordetella bronchiseptica RB50] gi|41017018|sp|Q7VWL4|DER_BORPE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|41017021|sp|Q7W6Q0|DER_BORPA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|41017022|sp|Q7WHN4|DER_BORBR RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|33563574|emb|CAE42473.1| putative GTP-binding protein [Bordetella pertussis Tohama I] gi|33573835|emb|CAE38143.1| putative GTP-binding protein [Bordetella parapertussis] gi|33576586|emb|CAE33664.1| putative GTP-binding protein [Bordetella bronchiseptica RB50] gi|332382610|gb|AEE67457.1| GTP-binding protein EngA [Bordetella pertussis CS] Length = 451 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 53/196 (27%), Positives = 93/196 (47%), Gaps = 33/196 (16%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273 +++ + K+ I+G N GKS+L N L ++ I D+PGTTRD + ID + +G + D Sbjct: 180 DVVDHRIKLAIVGRPNVGKSTLINTLLGEERVIAFDMPGTTRDAIEIDFERDGRKYTLID 239 Query: 274 TAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFI----- 325 TAG+R+ + +EK + +T +E ++++LL+ I+++ E+S F+ Sbjct: 240 TAGLRKRGKVFEAIEKFSVIKTLQAIEASNVVLLM--IDAQAEVSEQDAHIAGFVLETGR 297 Query: 326 ----------GTKSDLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSN 364 G SD E+ H IS+ G+G++ L+ + + + Sbjct: 298 AVVVAINKWDGLDSDQRERIEREFQRKLRFLGFARMHTISALKGQGVKPLLKSVNAAHAA 357 Query: 365 KFKKLPFSIPSHKRHL 380 F KL S P R L Sbjct: 358 AFAKL--STPRLTREL 371 Score = 40.0 bits (92), Expect = 0.84, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 9/89 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D G TRD + + + DT G Sbjct: 7 VALVGRPNVGKSTLFNRLTRSRAALVADFSGLTRDRHYGEGRVGDTPFLVIDTGGF---- 62 Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305 + V K+GI ++T + AD+++ L Sbjct: 63 EPVAKDGILAEMARQTRQAIAEADVVVFL 91 >gi|219685247|ref|ZP_03540067.1| ribosome-associated GTPase EngA [Borrelia garinii Far04] gi|219673343|gb|EED30362.1| ribosome-associated GTPase EngA [Borrelia garinii Far04] Length = 433 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 38/98 (38%), Positives = 61/98 (62%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 K+ I+G N+GKS+L N L+ +++IV+D PGTTRD + L G + +I DTAGIR Sbjct: 175 KVGIIGKPNSGKSTLINYLSGNEISIVSDQPGTTRDFIKTKLTRNGKVFEIIDTAGIRRR 234 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 +++VE I R ++ D++ LL I+ K+E++ Sbjct: 235 ARVNEVVEYYSINRALKVIDMVDIVFLL--IDVKEELT 270 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 47/89 (52%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K++I+G N GKS+LFN + +I G TRD++ + + K+ DT G Sbjct: 6 KVLIVGRPNVGKSALFNRILDTKRSITESTYGVTRDLVEEVCKVGSFNFKLIDTGGFTIL 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN 309 D + K +++ +E DLILL+ ++N Sbjct: 66 KDEISKIVVQKVLSSLEQVDLILLVLDVN 94 >gi|216263461|ref|ZP_03435456.1| ribosome-associated GTPase EngA [Borrelia afzelii ACA-1] gi|215980305|gb|EEC21126.1| ribosome-associated GTPase EngA [Borrelia afzelii ACA-1] Length = 433 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 38/98 (38%), Positives = 61/98 (62%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 K+ I+G N+GKS+L N L+ +++IV+D PGTTRD + L G + +I DTAGIR Sbjct: 175 KVGIIGKPNSGKSTLINYLSGNEISIVSDKPGTTRDFIKTKLTRNGKVFEIIDTAGIRRR 234 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 ++IVE + R ++ D++ LL I+ K+E++ Sbjct: 235 ARVNEIVEYYSVNRALKVIDMVDIVFLL--IDVKEELT 270 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 48/89 (53%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K++I+G N GKS+LFN + +I + G TRD++ + + K+ DT G Sbjct: 6 KVLIVGRPNVGKSALFNRILDTKRSITENTYGVTRDLVEEVCKVGSFKFKLIDTGGFTIL 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN 309 D + K +++ +E DLILL+ ++N Sbjct: 66 KDEISKIVVQKVLSSLEKVDLILLVLDVN 94 >gi|163848650|ref|YP_001636694.1| GTP-binding protein EngA [Chloroflexus aurantiacus J-10-fl] gi|222526586|ref|YP_002571057.1| GTP-binding protein EngA [Chloroflexus sp. Y-400-fl] gi|189037140|sp|A9WHH9|DER_CHLAA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|254783145|sp|B9LBT6|DER_CHLSY RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|163669939|gb|ABY36305.1| small GTP-binding protein [Chloroflexus aurantiacus J-10-fl] gi|222450465|gb|ACM54731.1| small GTP-binding protein [Chloroflexus sp. Y-400-fl] Length = 449 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 36/88 (40%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I I+G N GKSSL N L ++ ++V+ IPGTTRD + + G + + DTAGIR Sbjct: 184 RIAIVGRPNVGKSSLLNRLLGQERSVVSSIPGTTRDPIDTTITYHGEPITLIDTAGIRRA 243 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 I +EK + RT +E D+ LLL Sbjct: 244 GKIERGIEKYSVLRTLRAIERCDVALLL 271 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/81 (40%), Positives = 45/81 (55%), Gaps = 3/81 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI---R 278 + I+G N GKS+ FN L + AIV D+PGTTRD L D G + DTAG+ Sbjct: 6 VAIVGRPNVGKSTFFNRLIGERRAIVEDLPGTTRDRLYGDTFWNGREFTVVDTAGVLFGG 65 Query: 279 ETDDIVEKEGIKRTFLEVENA 299 E ++ E E +RT + E+A Sbjct: 66 EDPNLPEAEIARRTRAQAEHA 86 >gi|269103271|ref|ZP_06155968.1| GTP-binding protein EngA [Photobacterium damselae subsp. damselae CIP 102761] gi|268163169|gb|EEZ41665.1| GTP-binding protein EngA [Photobacterium damselae subsp. damselae CIP 102761] Length = 499 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 46/141 (32%), Positives = 82/141 (58%), Gaps = 6/141 (4%) Query: 179 SEEEDVQNFSSKEVLNDILFLKN-DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 S+EE + S E LN + ++N ++S ++ + K+ I+G N GKS+L N Sbjct: 169 SDEELESDEISIEDLNSVAEIENANLSEQDAEAAYKRLQEQPIKLAIIGRPNVGKSTLTN 228 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFL 294 + ++ +V D+PGTTRD + I ++ +G + DTAGIR ++ VEK + +T Sbjct: 229 RILGEERVVVYDMPGTTRDSIYIPMERDGQEYVLIDTAGIRRRKNMHEAVEKFSVIQTLK 288 Query: 295 EVENADLILLLKEINSKKEIS 315 VE+A+++LL+ I++++ IS Sbjct: 289 AVEDANVVLLI--IDARENIS 307 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 49/84 (58%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++ + + DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEINEHEFIVIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE + +++ + +E AD++L L Sbjct: 65 EGVETKMAEQSLMAIEEADVVLFL 88 >gi|33862476|ref|NP_894036.1| GTP-binding protein EngA [Prochlorococcus marinus str. MIT 9313] gi|41017013|sp|Q7V8X0|DER_PROMM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|33640589|emb|CAE20378.1| GTP-binding protein (HSR1-related):AAA ATPase superfamily [Prochlorococcus marinus str. MIT 9313] Length = 455 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 36/88 (40%), Positives = 54/88 (61%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSL NA+ + AIV+ I GTTRD + L+ EG+ ++ DTAGIR Sbjct: 179 QMAIIGRPNVGKSSLLNAICGEPRAIVSPIRGTTRDTIDTRLEREGHPWRLIDTAGIRRR 238 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + E GI R+F +E +D+ +L+ Sbjct: 239 RSVNYGPEFFGINRSFKAIERSDVCVLV 266 Score = 43.9 bits (102), Expect = 0.055, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 31/61 (50%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+L N L + AIV D PG TRD D K+ DT G+ D Sbjct: 6 VAIIGRPNVGKSTLVNRLCRSREAIVDDKPGVTRDRTYQDGFWGDREFKVVDTGGLVFDD 65 Query: 282 D 282 D Sbjct: 66 D 66 >gi|322514868|ref|ZP_08067886.1| ribosome-associated GTPase EngA [Actinobacillus ureae ATCC 25976] gi|322119172|gb|EFX91317.1| ribosome-associated GTPase EngA [Actinobacillus ureae ATCC 25976] Length = 505 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 63/235 (26%), Positives = 105/235 (44%), Gaps = 36/235 (15%) Query: 172 IEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGE---IIRNGYKIVILGHS 228 + AD EED N + E D F + ++ + + E I KI I+G Sbjct: 166 LNADQAVENEEDSANEEADEWDTDFDFDNEEDTALLDEALEDESESIEDKNIKIAIVGRP 225 Query: 229 NAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VE 285 N GKS+L N + +D +V D+PGTTRD + I ++ +G I DTAG+R+ + VE Sbjct: 226 NVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMERDGQQYTIIDTAGVRKRGKVNLAVE 285 Query: 286 KEGIKRTFLEVENADLILLL---KEINSKKEISFPKNIDFI-------------FIGTKS 329 K + +T +++A+++LL +E S +++S + FI + G Sbjct: 286 KFSVIKTLQAIQDANVVLLTIDAREGISDQDLSL---LGFILNAGRSLVIVVNKWDGLSQ 342 Query: 330 DLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373 D+ E D H IS+ G G+ L + +K + +K S+ Sbjct: 343 DIKDQVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSVKEAYACATQKTSTSM 397 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 51/84 (60%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++ GY + DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANIAGYDFIVVDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE++ +++ L +E AD++L L Sbjct: 65 EGVEEKMAEQSLLAIEEADVVLFL 88 >gi|269215396|ref|ZP_06159250.1| ribosome-associated GTPase EngA [Slackia exigua ATCC 700122] gi|269130883|gb|EEZ61958.1| ribosome-associated GTPase EngA [Slackia exigua ATCC 700122] Length = 440 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 38/91 (41%), Positives = 53/91 (58%), Gaps = 3/91 (3%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 N + I+G NAGKSSL N L K+ +IV+D+ GTTRD + ++ EG I DTAG+ Sbjct: 179 NIVNVAIIGRPNAGKSSLTNRLIGKERSIVSDVAGTTRDAIDTTIEHEGTFYTIVDTAGL 238 Query: 278 R---ETDDIVEKEGIKRTFLEVENADLILLL 305 R + D VE G R ++ AD+ LL+ Sbjct: 239 RRKAQIDQDVEYYGFVRAMRAIDRADVALLV 269 Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+ N + + AIV ++ G TRD + + G + DT GI D Sbjct: 8 VAVVGRPNVGKSTFVNRITHGNDAIVHEMRGVTRDRSYHEAEWSGVHFTLVDTGGIEMGD 67 Query: 282 DIVEKEGIK-RTFLEVENADLILLL 305 D V + I+ + F+ E AD I+ + Sbjct: 68 DDVFQGSIREQAFVGAEEADAIVFI 92 >gi|145628971|ref|ZP_01784770.1| GTP-binding protein EngA [Haemophilus influenzae 22.1-21] gi|144978474|gb|EDJ88197.1| GTP-binding protein EngA [Haemophilus influenzae 22.1-21] Length = 504 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 88/183 (48%), Gaps = 33/183 (18%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI I+G N GKS+L N + +D +V D+PGTTRD + I ++ +G + DTAG+R+ Sbjct: 217 KIAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMERDGQQYTLIDTAGVRKR 276 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNIDFI----------- 323 + VEK + +T +++A+++LL +E S +++S + FI Sbjct: 277 GKVHLAVEKFSVIKTLQAIQDANVVLLTIDARENISDQDLSL---LGFILNAGRSLVIVV 333 Query: 324 --FIGTKSDLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLP 370 + G D+ E D H IS+ G G+ L + IK + +K+ Sbjct: 334 NKWDGLDQDVKDRVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSIKEAYACATQKMT 393 Query: 371 FSI 373 S+ Sbjct: 394 TSL 396 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 50/84 (59%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD + GY + DT GI T+ Sbjct: 6 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHIVGYDFIVIDTGGIDGTE 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE++ +++ L ++ AD++L L Sbjct: 66 EGVEEKMAEQSLLAIDEADIVLFL 89 >gi|124023844|ref|YP_001018151.1| GTP-binding protein EngA [Prochlorococcus marinus str. MIT 9303] gi|123964130|gb|ABM78886.1| GTP-binding protein (HSR1-related) [Prochlorococcus marinus str. MIT 9303] Length = 461 Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 36/88 (40%), Positives = 54/88 (61%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSL NA+ + AIV+ I GTTRD + L+ EG+ ++ DTAGIR Sbjct: 185 QMAIIGRPNVGKSSLLNAICGEPRAIVSPIRGTTRDTIDTRLEREGHPWRLIDTAGIRRR 244 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + E GI R+F +E +D+ +L+ Sbjct: 245 RSVNYGPEFFGINRSFKAIERSDVCVLV 272 Score = 43.5 bits (101), Expect = 0.060, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 31/61 (50%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+L N L + AIV D PG TRD D K+ DT G+ D Sbjct: 12 VAIIGRPNVGKSTLVNRLCRSREAIVDDKPGVTRDRTYQDGFWGDREFKVVDTGGLVFDD 71 Query: 282 D 282 D Sbjct: 72 D 72 >gi|225551948|ref|ZP_03772888.1| ribosome-associated GTPase EngA [Borrelia sp. SV1] gi|225370946|gb|EEH00376.1| ribosome-associated GTPase EngA [Borrelia sp. SV1] Length = 433 Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 37/98 (37%), Positives = 60/98 (61%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 K+ I+G N+GKS+L N L+ ++AIV+D PGTTRD + G + ++ DTAGIR Sbjct: 175 KVGIIGKPNSGKSTLINYLSGNEIAIVSDQPGTTRDFIKTKFTRNGKVFEVVDTAGIRRR 234 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 ++IVE + R ++ D++ LL I+ K+E++ Sbjct: 235 ARVNEIVEYYSVNRALKVIDMVDIVFLL--IDVKEELT 270 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 48/89 (53%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K++I+G N GKS+LFN + +I G TRD++ ++ + K+ DT G Sbjct: 6 KVLIVGRPNVGKSALFNRILDTKRSITESTYGVTRDLVEEVCKVDSFKFKLIDTGGFTIL 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN 309 D + K +++ ++ DLILL+ +IN Sbjct: 66 KDEISKIVVQKVLSSLKKVDLILLVLDIN 94 >gi|198275294|ref|ZP_03207825.1| hypothetical protein BACPLE_01453 [Bacteroides plebeius DSM 17135] gi|198271877|gb|EDY96147.1| hypothetical protein BACPLE_01453 [Bacteroides plebeius DSM 17135] Length = 394 Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 50/166 (30%), Positives = 90/166 (54%), Gaps = 20/166 (12%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI-SDTAG 276 N I + G NAGKSSL NAL +D A+V+DIPGTT D + +++ G + DTAG Sbjct: 8 NRLHIGLFGKRNAGKSSLINALTHQDTALVSDIPGTTTDPVFKAMEIHGLGPCVFIDTAG 67 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL-------KEINSKKEISFPKNIDFIFIGTKS 329 + ++ E I++T +E D+ L++ +E++ ++ + KN+ I+I K Sbjct: 68 FDDEGELGELR-IRQTQRALEKTDIALMVCTDEHLDEELHWQRLLK-EKNVPVIWILNKC 125 Query: 330 DLYSTYTE----------EYDHLISSFTGEGLEELINKIKSILSNK 365 DL S + + L+S+ TG+GL++++ +++ L ++ Sbjct: 126 DLLSDAEQTMRRIEHQCGQVPLLVSTLTGKGLDDILRSLRNKLPDE 171 >gi|194365440|ref|YP_002028050.1| GTP-binding protein EngA [Stenotrophomonas maltophilia R551-3] gi|238693498|sp|B4SSW8|DER_STRM5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|194348244|gb|ACF51367.1| small GTP-binding protein [Stenotrophomonas maltophilia R551-3] Length = 465 Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 32/91 (35%), Positives = 55/91 (60%), Gaps = 3/91 (3%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 N +I +G N GKS+L N + ++ I +D+PGTTRD + +DL+ +G ++ DTAG+ Sbjct: 177 NRIRIAFVGRPNVGKSTLVNRILGEERMIASDVPGTTRDSIAVDLERDGREYRLIDTAGL 236 Query: 278 R---ETDDIVEKEGIKRTFLEVENADLILLL 305 R D++VEK + +T +E + +L+ Sbjct: 237 RRRSRVDEVVEKFSVVKTMQSIEQCQVAVLM 267 Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust. Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 12/72 (16%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD----VLTIDLDLEGYLVKISDTAGI 277 + ++G N GKS++FNAL + A+V D PG TRD V +D D +V DT GI Sbjct: 5 VALVGRPNVGKSTIFNALTRTRDALVHDQPGVTRDRNYGVCRLDEDNHFLVV---DTGGI 61 Query: 278 RETDDIVEKEGI 289 E E+EG+ Sbjct: 62 AE-----EEEGL 68 >gi|301155940|emb|CBW15410.1| predicted GTP-binding protein [Haemophilus parainfluenzae T3T1] Length = 506 Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 88/183 (48%), Gaps = 33/183 (18%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI I+G N GKS+L N + +D +V D+PGTTRD + I ++ +G + DTAG+R+ Sbjct: 219 KIAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMERDGQQYTLIDTAGVRKR 278 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNIDFI----------- 323 + VEK + +T +++A+++LL +E S +++S + FI Sbjct: 279 GKVHLAVEKFSVIKTLQAIQDANVVLLTIDARENISDQDLSL---LGFILNAGRSLVIVV 335 Query: 324 --FIGTKSDLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLP 370 + G D+ E D H IS+ G G+ L + IK + +K+ Sbjct: 336 NKWDGLDQDVKDRVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSIKEAYACATQKMT 395 Query: 371 FSI 373 S+ Sbjct: 396 TSL 398 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 82/165 (49%), Gaps = 18/165 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++ GY + DT GI T+ Sbjct: 6 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANISGYDFIVIDTGGIDGTE 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL---------KEINSKKEISFPKNIDFIFIGTKSDL- 331 + VE++ +++ L +E AD++L L +I + N + + K+D Sbjct: 66 EGVEEKMAEQSLLAIEEADVVLFLVDARAGLTAADIGIANYLRQRTNKTTVVVANKTDGI 125 Query: 332 -YSTYTEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKK 368 ++ E+ L I++ G G+ +L+ ++ + L+ K ++ Sbjct: 126 DADSHCAEFYQLGLGEIEQIAASQGRGVTQLMEQVLAPLAEKLQE 170 >gi|71893425|ref|YP_278871.1| GTP-binding protein EngA [Mycoplasma hyopneumoniae J] Length = 434 Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 55/179 (30%), Positives = 87/179 (48%), Gaps = 29/179 (16%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 +K+ ++G NAGKSSL N L ++ +I+++IPGTTRD ++ + G ++I DTAGIR+ Sbjct: 172 FKLTLIGRPNAGKSSLLNWLLGENRSIISEIPGTTRDSISGFWKINGQTLEIIDTAGIRK 231 Query: 280 TDDIVEK---EGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK 328 + E R F ++ ADL L+L + +F +N I + K Sbjct: 232 KSKLAESVDFYAFLRAFRSLDQADLTLILLDACQDFHHFDLRIAGYAFERNKPIILVINK 291 Query: 329 SDLYSTYT---EEYDH---------------LISSFTGEGLEELINKIKSILSNKFKKL 369 DL T +EY IS+ TGE + +LI+ I + +N KK+ Sbjct: 292 WDLIQKDTRTQQEYLRKIKGKFKFLDWAPVVFISAKTGEKIHKLIDVIFQVKNNLEKKI 350 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/93 (30%), Positives = 53/93 (56%), Gaps = 4/93 (4%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G SN GKS+LFN +A K ++I +PG TRD + ++ + + DT GI+ + Sbjct: 6 VALVGKSNVGKSTLFNRIAGKKISITNPLPGVTRDRIYQNVTWNQHSFLLIDTGGIQIEN 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL----KEINS 310 + + + + +E AD+++ + KEI+S Sbjct: 66 ENFQDLVRIQVQIALEEADILVWVLDGTKEIDS 98 >gi|220929546|ref|YP_002506455.1| GTP-binding protein EngA [Clostridium cellulolyticum H10] gi|254783147|sp|B8I442|DER_CLOCE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|219999874|gb|ACL76475.1| small GTP-binding protein [Clostridium cellulolyticum H10] Length = 441 Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 54/88 (61%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ ++G NAGKSSL N++ ++ IV++IPGTTRD + ++ +G DTAGIR Sbjct: 179 KVAVVGKPNAGKSSLINSILGENRVIVSNIPGTTRDAIDTHVEKDGQKYTFIDTAGIRRR 238 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 I +EK R++ VE AD+ L++ Sbjct: 239 SKISENIEKYSTIRSWTAVERADVCLIM 266 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 50/85 (58%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280 + ++G N GKS+ FN LA ++IV D PG TRD + +++ + DT GI + Sbjct: 6 VAVVGRPNVGKSTFFNYLAGSRISIVEDTPGVTRDRIYTEIEWRNTKFTLIDTGGIEPYS 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 +DI+ ++ ++ + +E AD+I+ + Sbjct: 66 EDIIMQQMKRQAEIAIETADVIIFM 90 >gi|54020024|ref|YP_115589.1| GTP-binding protein EngA [Mycoplasma hyopneumoniae 232] gi|53987197|gb|AAV27398.1| putative GTP-binding protein [Mycoplasma hyopneumoniae 232] Length = 433 Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 55/179 (30%), Positives = 87/179 (48%), Gaps = 29/179 (16%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 +K+ ++G NAGKSSL N L ++ +I+++IPGTTRD ++ + G ++I DTAGIR+ Sbjct: 171 FKLTLIGRPNAGKSSLLNWLLGENRSIISEIPGTTRDSISGFWKINGQTLEIIDTAGIRK 230 Query: 280 TDDIVEK---EGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK 328 + E R F ++ ADL L+L + +F +N I + K Sbjct: 231 KSKLAESVDFYAFLRAFRSLDQADLTLILLDACQDFHHFDLRIAGYAFERNKPIILVINK 290 Query: 329 SDLYSTYT---EEYDH---------------LISSFTGEGLEELINKIKSILSNKFKKL 369 DL T +EY IS+ TGE + +LI+ I + +N KK+ Sbjct: 291 WDLIQKDTRTQQEYLRKIKGKFKFLDWAPVVFISAKTGEKIHKLIDVIFQVKNNLEKKI 349 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 30/98 (30%), Positives = 54/98 (55%), Gaps = 14/98 (14%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G SN GKS+LFN +A K ++I +PG TRD + ++ + + DT GI+ Sbjct: 5 VALVGKSNVGKSTLFNRIAGKKISITDPLPGVTRDRIYQNVTWNQHSFLLIDTGGIQ--- 61 Query: 282 DIVEKEGIK-----RTFLEVENADLILLL----KEINS 310 +E E + + + +E AD+++ + KEI+S Sbjct: 62 --IENENFQDLIRIQVQIALEEADILVWVLDGTKEIDS 97 >gi|302391816|ref|YP_003827636.1| ribosome-associated GTPase EngA [Acetohalobium arabaticum DSM 5501] gi|302203893|gb|ADL12571.1| ribosome-associated GTPase EngA [Acetohalobium arabaticum DSM 5501] Length = 438 Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 42/124 (33%), Positives = 70/124 (56%), Gaps = 8/124 (6%) Query: 187 FSSKEVLN--DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 S+K LN D+L +++ SH S + GE + +I ++G N GKSSL N++ K+ Sbjct: 146 ISAKHALNTGDLL---DEVISHFSTEETGEYDEDTIRISVIGRPNVGKSSLVNSILGKER 202 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADL 301 IV D+PGTTRD + ++ I DTAG+R+ + +EK + R+ V+ +D+ Sbjct: 203 VIVNDVPGTTRDAIDTYFEVGDNQFVIIDTAGMRKRSKVEAGIEKYSVIRSLKAVDRSDV 262 Query: 302 ILLL 305 L++ Sbjct: 263 ALMV 266 Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 47/85 (55%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFN + ++IV D P TRD L + + + DT G+ ++ Sbjct: 6 VAIVGRPNVGKSTLFNRIVGNRISIVEDEPSITRDRLYGEGEWLDNHFLVVDTGGLDLDS 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 + ++ E ++ L +E A+++L + Sbjct: 66 EAELKDEVRQQAELAIEEAEVVLFV 90 >gi|325578764|ref|ZP_08148811.1| ribosome-associated GTPase EngA [Haemophilus parainfluenzae ATCC 33392] gi|325159588|gb|EGC71720.1| ribosome-associated GTPase EngA [Haemophilus parainfluenzae ATCC 33392] Length = 506 Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 88/183 (48%), Gaps = 33/183 (18%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI I+G N GKS+L N + +D +V D+PGTTRD + I ++ +G + DTAG+R+ Sbjct: 219 KIAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMERDGQQYTLIDTAGVRKR 278 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNIDFI----------- 323 + VEK + +T +++A+++LL +E S +++S + FI Sbjct: 279 GKVHLAVEKFSVIKTLQAIQDANVVLLTIDARENISDQDLSL---LGFILNTGRSLVIVV 335 Query: 324 --FIGTKSDLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLP 370 + G D+ E D H IS+ G G+ L + IK + +K+ Sbjct: 336 NKWDGLDQDVKDRVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSIKEAYACATQKMT 395 Query: 371 FSI 373 S+ Sbjct: 396 TSL 398 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 82/165 (49%), Gaps = 18/165 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++ GY + DT GI T+ Sbjct: 6 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANISGYDFIVIDTGGIDGTE 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL---------KEINSKKEISFPKNIDFIFIGTKSDL- 331 + VE++ +++ L +E AD++L L +I + N + + K+D Sbjct: 66 EGVEEKMAEQSLLAIEEADVVLFLVDARAGLTAADIGIANYLRQRTNKTTVVVANKTDGI 125 Query: 332 -YSTYTEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKK 368 ++ E+ L I++ G G+ +L+ ++ + L+ K ++ Sbjct: 126 DADSHCAEFYQLGLGKIEQIAASQGRGVTQLMEQVLAPLAEKLQE 170 >gi|144227450|gb|AAZ44160.2| GTP-binding protein EngA [Mycoplasma hyopneumoniae J] Length = 433 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 55/179 (30%), Positives = 87/179 (48%), Gaps = 29/179 (16%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 +K+ ++G NAGKSSL N L ++ +I+++IPGTTRD ++ + G ++I DTAGIR+ Sbjct: 171 FKLTLIGRPNAGKSSLLNWLLGENRSIISEIPGTTRDSISGFWKINGQTLEIIDTAGIRK 230 Query: 280 TDDIVEK---EGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK 328 + E R F ++ ADL L+L + +F +N I + K Sbjct: 231 KSKLAESVDFYAFLRAFRSLDQADLTLILLDACQDFHHFDLRIAGYAFERNKPIILVINK 290 Query: 329 SDLYSTYT---EEYDH---------------LISSFTGEGLEELINKIKSILSNKFKKL 369 DL T +EY IS+ TGE + +LI+ I + +N KK+ Sbjct: 291 WDLIQKDTRTQQEYLRKIKGKFKFLDWAPVVFISAKTGEKIHKLIDVIFQVKNNLEKKI 349 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/93 (30%), Positives = 53/93 (56%), Gaps = 4/93 (4%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G SN GKS+LFN +A K ++I +PG TRD + ++ + + DT GI+ + Sbjct: 5 VALVGKSNVGKSTLFNRIAGKKISITNPLPGVTRDRIYQNVTWNQHSFLLIDTGGIQIEN 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL----KEINS 310 + + + + +E AD+++ + KEI+S Sbjct: 65 ENFQDLVRIQVQIALEEADILVWVLDGTKEIDS 97 >gi|309782317|ref|ZP_07677044.1| ribosome-associated GTPase EngA [Ralstonia sp. 5_7_47FAA] gi|308918935|gb|EFP64605.1| ribosome-associated GTPase EngA [Ralstonia sp. 5_7_47FAA] Length = 376 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 34/101 (33%), Positives = 64/101 (63%), Gaps = 5/101 (4%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 +G +I I+G N GKS+L NAL ++ I D+PGTTRD + +D + G + DTAG+ Sbjct: 108 HGTRIAIVGRPNVGKSTLVNALIGEERVIAFDMPGTTRDAIYVDFERNGKPYTLIDTAGL 167 Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 R+ + +EK + +T + +A++++L+ ++++++IS Sbjct: 168 RKRGKVFEAIEKFSVVKTLQSIADANVVVLI--LDAQQDIS 206 >gi|187928156|ref|YP_001898643.1| GTP-binding protein EngA [Ralstonia pickettii 12J] gi|238691801|sp|B2U9V3|DER_RALPJ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|187725046|gb|ACD26211.1| small GTP-binding protein [Ralstonia pickettii 12J] Length = 447 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 34/101 (33%), Positives = 64/101 (63%), Gaps = 5/101 (4%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 +G +I I+G N GKS+L NAL ++ I D+PGTTRD + +D + G + DTAG+ Sbjct: 179 HGTRIAIVGRPNVGKSTLVNALIGEERVIAFDMPGTTRDAIYVDFERNGKPYTLIDTAGL 238 Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 R+ + +EK + +T + +A++++L+ ++++++IS Sbjct: 239 RKRGKVFEAIEKFSVVKTLQSIADANVVVLI--LDAQQDIS 277 Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust. Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 9/89 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L + A+V DIPG TRD + + DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVADIPGLTRDRHYGEGRVGDRPFIAIDTGGF---- 60 Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305 + V KEGI K+T V AD+++ + Sbjct: 61 EPVAKEGIVAEMAKQTRQAVVEADVVIFI 89 >gi|226324619|ref|ZP_03800137.1| hypothetical protein COPCOM_02403 [Coprococcus comes ATCC 27758] gi|225207067|gb|EEG89421.1| hypothetical protein COPCOM_02403 [Coprococcus comes ATCC 27758] Length = 442 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 54/174 (31%), Positives = 84/174 (48%), Gaps = 29/174 (16%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSS+ N L KD IV+DI GTTRD + ++ G DTAG+R Sbjct: 179 RVAIVGKPNVGKSSIINRLIGKDRVIVSDIAGTTRDAIDTEVVHNGKEYVFIDTAGLRRK 238 Query: 281 DDI---VEKEGIKRTFLEVENADLILL-------LKEINSK-KEISFPKNIDFIFIGTKS 329 + I +E+ I RT VE AD++L+ + E ++K I+ + I + K Sbjct: 239 NKIKEELERYSIIRTVTAVERADVVLVVIDAAEGVTEQDAKIAGIAHERGKGVIIVVNKW 298 Query: 330 DLY---STYTEEYDHLI---------------SSFTGEGLEELINKIKSILSNK 365 D T EY+H I S+ TG+ L +L + I +++ N+ Sbjct: 299 DAIEKNDKTTREYEHQIRMVLSFLPYAEIMYVSALTGQRLPKLFDMIDTVIENQ 352 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 54/88 (61%), Gaps = 1/88 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFNALA + +AIV D PG TRD + +++ + DT GI ++ Sbjct: 6 VAIVGRPNVGKSTLFNALAGEKIAIVKDTPGVTRDRIYAEVNWLDKEFTLIDTGGIEPDS 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308 D++ + ++ + ++ AD+IL + ++ Sbjct: 66 RDVILSQMREQAQIAIDTADVILFMTDV 93 >gi|254521460|ref|ZP_05133515.1| GTP-binding protein [Stenotrophomonas sp. SKA14] gi|219719051|gb|EED37576.1| GTP-binding protein [Stenotrophomonas sp. SKA14] Length = 465 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 32/91 (35%), Positives = 55/91 (60%), Gaps = 3/91 (3%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 N +I +G N GKS+L N + ++ I +D+PGTTRD + +DL+ +G ++ DTAG+ Sbjct: 177 NRIRIAFVGRPNVGKSTLVNRILGEERMIASDVPGTTRDSIAVDLERDGREYRLIDTAGL 236 Query: 278 R---ETDDIVEKEGIKRTFLEVENADLILLL 305 R D++VEK + +T +E + +L+ Sbjct: 237 RRRSRVDEVVEKFSVVKTMQSIEQCQVAVLM 267 Score = 43.5 bits (101), Expect = 0.064, Method: Compositional matrix adjust. Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 12/72 (16%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD----VLTIDLDLEGYLVKISDTAGI 277 + ++G N GKS++FNAL + A+V D PG TRD V +D D +V DT GI Sbjct: 5 VALVGRPNVGKSTIFNALTRTRDALVHDQPGVTRDRNYGVCRLDEDNHFLVV---DTGGI 61 Query: 278 RETDDIVEKEGI 289 E E+EG+ Sbjct: 62 AE-----EEEGL 68 >gi|145633562|ref|ZP_01789290.1| GTP-binding protein EngA [Haemophilus influenzae 3655] gi|144985768|gb|EDJ92382.1| GTP-binding protein EngA [Haemophilus influenzae 3655] Length = 504 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 88/183 (48%), Gaps = 33/183 (18%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI I+G N GKS+L N + +D +V D+PGTTRD + I ++ +G + DTAG+R+ Sbjct: 217 KIAIVGRPNVGKSTLTNRILGEDRVVVFDMPGTTRDSIYIPMERDGQQYTLIDTAGVRKR 276 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNIDFI----------- 323 + VEK + +T +++A+++LL +E S +++S + FI Sbjct: 277 GKVHLAVEKFSVIKTLQAIQDANVVLLTIDARENISDQDLSL---LGFILNAGRSLVIVV 333 Query: 324 --FIGTKSDLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLP 370 + G D+ E D H IS+ G G+ L + IK + +K+ Sbjct: 334 NKWDGLDQDVKDRVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSIKEAYACATQKMT 393 Query: 371 FSI 373 S+ Sbjct: 394 TSL 396 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 50/84 (59%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD + GY + DT GI T+ Sbjct: 6 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHIAGYDFILIDTGGIDGTE 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE++ +++ L ++ AD++L L Sbjct: 66 EGVEEKMAEQSLLAIDEADIVLFL 89 >gi|241662759|ref|YP_002981119.1| GTP-binding protein EngA [Ralstonia pickettii 12D] gi|240864786|gb|ACS62447.1| small GTP-binding protein [Ralstonia pickettii 12D] Length = 447 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 34/101 (33%), Positives = 64/101 (63%), Gaps = 5/101 (4%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 +G +I I+G N GKS+L NAL ++ I D+PGTTRD + +D + G + DTAG+ Sbjct: 179 HGTRIAIVGRPNVGKSTLVNALIGEERVIAFDMPGTTRDAIYVDFERNGKPYTLIDTAGL 238 Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 R+ + +EK + +T + +A++++L+ ++++++IS Sbjct: 239 RKRGKVFEAIEKFSVVKTLQSIADANVVVLI--LDAQQDIS 277 Score = 43.9 bits (102), Expect = 0.051, Method: Compositional matrix adjust. Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 9/89 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L + A+V DIPG TRD + + DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVADIPGLTRDRHYGEGRVGDRPFIAIDTGGF---- 60 Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305 + V KEGI K+T V AD+++ + Sbjct: 61 EPVAKEGIVAEMAKQTRQAVVEADVVIFI 89 >gi|33239840|ref|NP_874782.1| GTP-binding protein EngA [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|41017014|sp|Q7VDI8|DER_PROMA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|33237366|gb|AAP99434.1| Predicted GTPase [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 456 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 37/88 (42%), Positives = 53/88 (60%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSL NA+ + AIV+ I GTTRD + + EG L K+ DTAGIR Sbjct: 179 QVAIVGRPNVGKSSLLNAICGEKRAIVSAIRGTTRDTIDTSIVREGKLWKLIDTAGIRRR 238 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + E GI R+F +E +D+ +L+ Sbjct: 239 KSVNYGPEFFGINRSFKAIERSDVCVLV 266 Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 29/56 (51%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 + I+G N GKS+L N L + AIV D PG TRD D K+ DT G+ Sbjct: 6 VAIIGRPNVGKSTLVNRLCQSREAIVHDQPGVTRDRSYQDGFWGDREFKLVDTGGL 61 >gi|145631633|ref|ZP_01787398.1| GTP-binding protein EngA [Haemophilus influenzae R3021] gi|144982767|gb|EDJ90296.1| GTP-binding protein EngA [Haemophilus influenzae R3021] Length = 504 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 88/183 (48%), Gaps = 33/183 (18%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI I+G N GKS+L N + +D +V D+PGTTRD + I ++ +G + DTAG+R+ Sbjct: 217 KIAIVGRPNVGKSTLTNRILGEDRVVVFDMPGTTRDSIYIPMERDGQQYTLIDTAGVRKR 276 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNIDFI----------- 323 + VEK + +T +++A+++LL +E S +++S + FI Sbjct: 277 GKVHLAVEKFSVIKTLQAIQDANVVLLTIDARENISDQDLSL---LGFILNAGRSLVIVV 333 Query: 324 --FIGTKSDLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLP 370 + G D+ E D H IS+ G G+ L + IK + +K+ Sbjct: 334 NKWDGLDQDVKDRVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSIKEAYACATQKMT 393 Query: 371 FSI 373 S+ Sbjct: 394 TSL 396 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 50/84 (59%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD + GY + DT GI T+ Sbjct: 6 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHIAGYDFIVIDTGGIDGTE 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE++ +++ L ++ AD++L L Sbjct: 66 EGVEEKMAEQSLLAIDEADIVLFL 89 >gi|260583275|ref|ZP_05851051.1| ribosome-associated GTPase EngA [Haemophilus influenzae NT127] gi|260093682|gb|EEW77594.1| ribosome-associated GTPase EngA [Haemophilus influenzae NT127] Length = 503 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 88/183 (48%), Gaps = 33/183 (18%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI I+G N GKS+L N + +D +V D+PGTTRD + I ++ +G + DTAG+R+ Sbjct: 216 KIAIVGRPNVGKSTLTNRILGEDRVVVFDMPGTTRDSIYIPMERDGQQYTLIDTAGVRKR 275 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNIDFI----------- 323 + VEK + +T +++A+++LL +E S +++S + FI Sbjct: 276 GKVHLAVEKFSVIKTLQAIQDANVVLLTIDARENISDQDLSL---LGFILNAGRSLVIVV 332 Query: 324 --FIGTKSDLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLP 370 + G D+ E D H IS+ G G+ L + IK + +K+ Sbjct: 333 NKWDGLDQDVKDRVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSIKEAYACATQKMT 392 Query: 371 FSI 373 S+ Sbjct: 393 TSL 395 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 50/84 (59%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD + GY + DT GI T+ Sbjct: 6 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHIAGYDFIVIDTGGIDGTE 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE++ +++ L ++ AD++L L Sbjct: 66 EGVEEKMAEQSLLAIDEADIVLFL 89 >gi|295094896|emb|CBK83987.1| ribosome-associated GTPase EngA [Coprococcus sp. ART55/1] Length = 440 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 55/88 (62%), Gaps = 1/88 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFN LA + ++IV D PG TRD + D++ Y + DT GI E+ Sbjct: 6 VAIVGRPNVGKSTLFNVLAGEKISIVQDTPGVTRDRIYADINWLDYNFTLIDTGGIEPES 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308 D+I+ K ++ + +E AD+IL + ++ Sbjct: 66 DNIILKSMREQAEIAIETADVILFMTDV 93 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247 SS+ + D+L +++ SH ++ + +I I+G N GKSS+ N L +D IV Sbjct: 149 SSRLGIGDML---DEVVSHFNESAKDDTEDERPRIAIIGKPNVGKSSIINKLLGEDRVIV 205 Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILL 304 +DI GTTRD + ++ G DTAG+R I +E+ I RT VE ++ +L Sbjct: 206 SDIAGTTRDAVDTEIVRNGREYVFIDTAGLRRKSKIKEDIERYSIIRTVSAVERCNVAVL 265 Query: 305 L 305 + Sbjct: 266 V 266 >gi|229845438|ref|ZP_04465568.1| GTP-binding protein EngA [Haemophilus influenzae 6P18H1] gi|229811634|gb|EEP47333.1| GTP-binding protein EngA [Haemophilus influenzae 6P18H1] Length = 504 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 88/183 (48%), Gaps = 33/183 (18%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI I+G N GKS+L N + +D +V D+PGTTRD + I ++ +G + DTAG+R+ Sbjct: 217 KIAIVGRPNVGKSTLTNRILGEDRVVVFDMPGTTRDSIYIPMERDGQQYTLIDTAGVRKR 276 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNIDFI----------- 323 + VEK + +T +++A+++LL +E S +++S + FI Sbjct: 277 GKVHLAVEKFSVIKTLQAIQDANVVLLTIDARENISDQDLSL---LGFILNAGRSLVIVV 333 Query: 324 --FIGTKSDLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLP 370 + G D+ E D H IS+ G G+ L + IK + +K+ Sbjct: 334 NKWDGLDQDVKDRVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSIKEAYACATQKMT 393 Query: 371 FSI 373 S+ Sbjct: 394 TSL 396 Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 50/84 (59%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD + GY + DT GI T+ Sbjct: 6 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHIAGYDFIVIDTGGIDGTE 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE++ +++ L ++ AD++L L Sbjct: 66 EGVEEKMAEQSLLAIDEADIVLFL 89 >gi|16272103|ref|NP_438305.1| GTP-binding protein EngA [Haemophilus influenzae Rd KW20] gi|68248744|ref|YP_247856.1| GTP-binding protein EngA [Haemophilus influenzae 86-028NP] gi|260581297|ref|ZP_05849114.1| ribosome-associated GTPase EngA [Haemophilus influenzae RdAW] gi|1175159|sp|P44536|DER_HAEIN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|1573089|gb|AAC21807.1| GTP-binding protein [Haemophilus influenzae Rd KW20] gi|68056943|gb|AAX87196.1| GTP-binding protein EngA [Haemophilus influenzae 86-028NP] gi|260092046|gb|EEW75992.1| ribosome-associated GTPase EngA [Haemophilus influenzae RdAW] Length = 504 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 88/183 (48%), Gaps = 33/183 (18%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI I+G N GKS+L N + +D +V D+PGTTRD + I ++ +G + DTAG+R+ Sbjct: 217 KIAIVGRPNVGKSTLTNRILGEDRVVVFDMPGTTRDSIYIPMERDGQQYTLIDTAGVRKR 276 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNIDFI----------- 323 + VEK + +T +++A+++LL +E S +++S + FI Sbjct: 277 GKVHLAVEKFSVIKTLQAIQDANVVLLTIDARENISDQDLSL---LGFILNAGRSLVIVV 333 Query: 324 --FIGTKSDLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLP 370 + G D+ E D H IS+ G G+ L + IK + +K+ Sbjct: 334 NKWDGLDQDVKDRVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSIKEAYACATQKMT 393 Query: 371 FSI 373 S+ Sbjct: 394 TSL 396 Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 50/84 (59%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD + GY + DT GI T+ Sbjct: 6 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHIAGYDFIVIDTGGIDGTE 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE++ +++ L ++ AD++L L Sbjct: 66 EGVEEKMAEQSLLAIDEADIVLFL 89 >gi|284048574|ref|YP_003398913.1| ribosome-associated GTPase EngA [Acidaminococcus fermentans DSM 20731] gi|283952795|gb|ADB47598.1| ribosome-associated GTPase EngA [Acidaminococcus fermentans DSM 20731] Length = 443 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 56/88 (63%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 K+ I+G N GKSS+FN + + +IV+D+ GTTRD + + ++ +G DTAG+R Sbjct: 179 KVAIIGRPNVGKSSIFNDIIGQTRSIVSDVAGTTRDAIDVPVEKDGQTYLFIDTAGMRRK 238 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305 + D+ +EK I RT V+ +D++LL+ Sbjct: 239 GKIDEPIEKYSIIRTLRAVDRSDVVLLV 266 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFN A ++IV D PG TRD L D + + DT GI + Sbjct: 6 VAIVGRPNVGKSTLFNIFADSRISIVEDTPGVTRDRLYADAEWLDRKFTMVDTGGIEMQN 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 D + ++ + V AD+IL + Sbjct: 66 TDSIAVSIRQQAEVAVREADVILFV 90 >gi|148827277|ref|YP_001292030.1| GTP-binding protein EngA [Haemophilus influenzae PittGG] gi|148718519|gb|ABQ99646.1| GTP-binding protein EngA [Haemophilus influenzae PittGG] Length = 504 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 88/183 (48%), Gaps = 33/183 (18%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI I+G N GKS+L N + +D +V D+PGTTRD + I ++ +G + DTAG+R+ Sbjct: 217 KIAIVGRPNVGKSTLTNRILGEDRVVVFDMPGTTRDSIYIPMERDGQQYTLIDTAGVRKR 276 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNIDFI----------- 323 + VEK + +T +++A+++LL +E S +++S + FI Sbjct: 277 GKVHLAVEKFSVIKTLQAIQDANVVLLTIDARENISDQDLSL---LGFILNAGRSLVIVV 333 Query: 324 --FIGTKSDLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLP 370 + G D+ E D H IS+ G G+ L + IK + +K+ Sbjct: 334 NKWDGLDQDVKDRVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSIKEAYACATQKMT 393 Query: 371 FSI 373 S+ Sbjct: 394 TSL 396 Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 50/84 (59%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD + GY + DT GI T+ Sbjct: 6 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHIAGYDFIVIDTGGIDGTE 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE++ +++ L ++ AD++L L Sbjct: 66 EGVEEKMAEQSLLAIDEADIVLFL 89 >gi|148825596|ref|YP_001290349.1| GTP-binding protein EngA [Haemophilus influenzae PittEE] gi|229847254|ref|ZP_04467357.1| GTP-binding protein EngA [Haemophilus influenzae 7P49H1] gi|148715756|gb|ABQ97966.1| GTP-binding protein EngA [Haemophilus influenzae PittEE] gi|229809797|gb|EEP45520.1| GTP-binding protein EngA [Haemophilus influenzae 7P49H1] Length = 504 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 88/183 (48%), Gaps = 33/183 (18%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI I+G N GKS+L N + +D +V D+PGTTRD + I ++ +G + DTAG+R+ Sbjct: 217 KIAIVGRPNVGKSTLTNRILGEDRVVVFDMPGTTRDSIYIPMERDGQQYTLIDTAGVRKR 276 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNIDFI----------- 323 + VEK + +T +++A+++LL +E S +++S + FI Sbjct: 277 GKVHLAVEKFSVIKTLQAIQDANVVLLTIDARENISDQDLSL---LGFILNAGRSLVIVV 333 Query: 324 --FIGTKSDLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLP 370 + G D+ E D H IS+ G G+ L + IK + +K+ Sbjct: 334 NKWDGLDQDVKDRVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSIKEAYACATQKMT 393 Query: 371 FSI 373 S+ Sbjct: 394 TSL 396 Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 50/84 (59%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD + GY + DT GI T+ Sbjct: 6 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHIAGYDFIVIDTGGIDGTE 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE++ +++ L ++ AD++L L Sbjct: 66 EGVEEKMAEQSLLAIDEADIVLFL 89 >gi|325919426|ref|ZP_08181452.1| small GTP-binding protein domain/GTP-binding conserved hypothetical protein [Xanthomonas gardneri ATCC 19865] gi|325550092|gb|EGD20920.1| small GTP-binding protein domain/GTP-binding conserved hypothetical protein [Xanthomonas gardneri ATCC 19865] Length = 465 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 41/162 (25%), Positives = 82/162 (50%), Gaps = 17/162 (10%) Query: 161 WIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLK-----------NDISSHISQ 209 W+ KL + +D ++EE V++ ++ +D++ L ++ + + Sbjct: 106 WLRKLARPTVLVINKIDGTDEETVRSEFARYGFSDVVALSAAHRQGIDELLEEVGARLPA 165 Query: 210 GKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266 GE++ +I +G N GKS+L N L ++ I +++PGTTRD + +D+D +G Sbjct: 166 EGAGELLDTDPARVRIAFVGRPNVGKSTLVNRLLGEERMIASEVPGTTRDSIAVDMDRDG 225 Query: 267 YLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLL 305 ++ DTAG+R + ++ VEK +T +E + +L+ Sbjct: 226 RQYRLIDTAGLRRRGKVEEAVEKFSAFKTLQAIEQCQVAVLM 267 Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 3/58 (5%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD--VLTIDLDLEGYLVKISDTAGI 277 + ++G N GKS++FNAL + A+V D PG TRD LD E + + DT GI Sbjct: 5 VALVGRPNVGKSTIFNALTRTRDALVHDQPGVTRDRNYGVCRLDEERPFI-VVDTGGI 61 >gi|145641461|ref|ZP_01797039.1| GTP-binding protein EngA [Haemophilus influenzae R3021] gi|145273752|gb|EDK13620.1| GTP-binding protein EngA [Haemophilus influenzae 22.4-21] Length = 504 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 88/183 (48%), Gaps = 33/183 (18%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI I+G N GKS+L N + +D +V D+PGTTRD + I ++ +G + DTAG+R+ Sbjct: 217 KIAIVGRPNVGKSTLTNRILGEDRVVVFDMPGTTRDSIYIPMERDGQQYTLIDTAGVRKR 276 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNIDFI----------- 323 + VEK + +T +++A+++LL +E S +++S + FI Sbjct: 277 GKVHLAVEKFSVIKTLQAIQDANVVLLTIDARENISDQDLSL---LGFILNAGRSLVIVV 333 Query: 324 --FIGTKSDLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLP 370 + G D+ E D H IS+ G G+ L + IK + +K+ Sbjct: 334 NKWDGLDQDVKDRVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSIKEAYACATQKMT 393 Query: 371 FSI 373 S+ Sbjct: 394 TSL 396 Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 50/84 (59%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD + GY + DT GI T+ Sbjct: 6 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHIAGYDFIVIDTGGIDGTE 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE++ +++ L ++ AD++L L Sbjct: 66 EGVEEKMAEQSLLAIDEADIVLFL 89 >gi|319775992|ref|YP_004138480.1| GTP-binding protein [Haemophilus influenzae F3047] gi|329123858|ref|ZP_08252415.1| ribosome-associated GTPase EngA [Haemophilus aegyptius ATCC 11116] gi|317450583|emb|CBY86800.1| predicted GTP-binding protein [Haemophilus influenzae F3047] gi|327468821|gb|EGF14295.1| ribosome-associated GTPase EngA [Haemophilus aegyptius ATCC 11116] Length = 504 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 88/183 (48%), Gaps = 33/183 (18%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI I+G N GKS+L N + +D +V D+PGTTRD + I ++ +G + DTAG+R+ Sbjct: 217 KIAIVGRPNVGKSTLTNRILGEDRVVVFDMPGTTRDSIYIPMERDGQQYTLIDTAGVRKR 276 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNIDFI----------- 323 + VEK + +T +++A+++LL +E S +++S + FI Sbjct: 277 GKVHLAVEKFSVIKTLQAIQDANVVLLTIDARENISDQDLSL---LGFILNAGRSLVIVV 333 Query: 324 --FIGTKSDLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLP 370 + G D+ E D H IS+ G G+ L + IK + +K+ Sbjct: 334 NKWDGLDQDVKDRVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSIKEAYACATQKMT 393 Query: 371 FSI 373 S+ Sbjct: 394 TSL 396 Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 50/84 (59%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD + GY + DT GI T+ Sbjct: 6 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHIAGYDFIVIDTGGIDGTE 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE++ +++ L ++ AD++L L Sbjct: 66 EGVEEKMAEQSLLAIDEADIVLFL 89 >gi|190574024|ref|YP_001971869.1| GTP-binding protein EngA [Stenotrophomonas maltophilia K279a] gi|229463762|sp|B2FNR1|DER_STRMK RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|190011946|emb|CAQ45567.1| putative GTP-binding protein [Stenotrophomonas maltophilia K279a] Length = 465 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 32/91 (35%), Positives = 55/91 (60%), Gaps = 3/91 (3%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 N +I +G N GKS+L N + ++ I +D+PGTTRD + +DL+ +G ++ DTAG+ Sbjct: 177 NRIRIAFVGRPNVGKSTLVNRILGEERMIASDVPGTTRDSIAVDLERDGREYRLIDTAGL 236 Query: 278 R---ETDDIVEKEGIKRTFLEVENADLILLL 305 R D++VEK + +T +E + +L+ Sbjct: 237 RRRSRVDEVVEKFSVVKTMQSIEQCQVAVLM 267 Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 7/65 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD----VLTIDLDLEGYLVKISDTAGI 277 + ++G N GKS++FNAL + A+V D PG TRD V +D D +V DT GI Sbjct: 5 VALVGRPNVGKSTIFNALTRTRDALVHDQPGVTRDRNYGVCRLDEDNHFLVV---DTGGI 61 Query: 278 RETDD 282 D+ Sbjct: 62 AGEDE 66 >gi|188587902|ref|YP_001920548.1| GTP-binding protein EngA [Clostridium botulinum E3 str. Alaska E43] gi|238689667|sp|B2V3Z1|DER_CLOBA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|188498183|gb|ACD51319.1| ribosome-associated GTPase EngA [Clostridium botulinum E3 str. Alaska E43] Length = 438 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 34/85 (40%), Positives = 52/85 (61%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET- 280 + I+G N GKS+LFN LA K ++IV D PG TRD + + + Y + DT GI T Sbjct: 6 VAIVGRPNVGKSTLFNKLAGKRISIVQDTPGVTRDRVYAEAEWLNYNFTMIDTGGIEPTN 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 DDI+ K+ ++ + +E AD+I+ + Sbjct: 66 DDIIMKQMRRQANIAIETADVIVFI 90 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I ++G N GKSSL N L ++ IV+D+ GTTRD + L+ E + DTAG+R Sbjct: 178 RIAMIGKPNVGKSSLINKLLGEERLIVSDVAGTTRDAIDSYLETEQGKFILIDTAGLRRK 237 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E+ + RT+ +E AD+ +L+ Sbjct: 238 SKVKEEIERYSVIRTYASIEKADVCILM 265 >gi|145640014|ref|ZP_01795612.1| GTP-binding protein EngA [Haemophilus influenzae PittII] gi|145270901|gb|EDK10820.1| GTP-binding protein EngA [Haemophilus influenzae PittII] Length = 504 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 88/183 (48%), Gaps = 33/183 (18%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI I+G N GKS+L N + +D +V D+PGTTRD + I ++ +G + DTAG+R+ Sbjct: 217 KIAIVGRPNVGKSTLTNRILGEDRVVVFDMPGTTRDSIYIPMERDGQQYTLIDTAGVRKR 276 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNIDFI----------- 323 + VEK + +T +++A+++LL +E S +++S + FI Sbjct: 277 GKVHLAVEKFSVIKTLQAIQDANVVLLTIDARENISDQDLSL---LGFILNAGRSLVIVV 333 Query: 324 --FIGTKSDLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLP 370 + G D+ E D H IS+ G G+ L + IK + +K+ Sbjct: 334 NKWDGLDQDVKDRVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSIKEAYACATQKMT 393 Query: 371 FSI 373 S+ Sbjct: 394 TSL 396 Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 50/84 (59%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD + GY + DT GI T+ Sbjct: 6 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHIAGYDFIVIDTGGIDGTE 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE++ +++ L ++ AD++L L Sbjct: 66 EGVEEKMAEQSLLAIDEADIVLFL 89 >gi|251778692|ref|ZP_04821612.1| ribosome-associated GTPase EngA [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083007|gb|EES48897.1| ribosome-associated GTPase EngA [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 438 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 34/85 (40%), Positives = 52/85 (61%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET- 280 + I+G N GKS+LFN LA K ++IV D PG TRD + + + Y + DT GI T Sbjct: 6 VAIVGRPNVGKSTLFNKLAGKRISIVQDTPGVTRDRVYAEAEWLNYNFTMIDTGGIEPTN 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 DDI+ K+ ++ + +E AD+I+ + Sbjct: 66 DDIIMKQMRRQANIAIETADVIVFI 90 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I ++G N GKSSL N L ++ IV+D+ GTTRD + L+ E + DTAG+R Sbjct: 178 RIAMIGKPNVGKSSLINKLLGEERLIVSDVAGTTRDAIDSYLETEQGKFILIDTAGLRRK 237 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E+ + RT+ +E AD+ +L+ Sbjct: 238 SKVKEEIERYSVIRTYASIEKADVCILM 265 >gi|301168789|emb|CBW28380.1| predicted GTP-binding protein [Haemophilus influenzae 10810] Length = 503 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 88/183 (48%), Gaps = 33/183 (18%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI I+G N GKS+L N + +D +V D+PGTTRD + I ++ +G + DTAG+R+ Sbjct: 216 KIAIVGRPNVGKSTLTNRILGEDRVVVFDMPGTTRDSIYIPMERDGQQYTLIDTAGVRKR 275 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNIDFI----------- 323 + VEK + +T +++A+++LL +E S +++S + FI Sbjct: 276 GKVHLAVEKFSVIKTLQAIQDANVVLLTIDARENISDQDLSL---LGFILNAGRSLVIVV 332 Query: 324 --FIGTKSDLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLP 370 + G D+ E D H IS+ G G+ L + IK + +K+ Sbjct: 333 NKWDGLDQDVKDRVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSIKEAYACATQKMT 392 Query: 371 FSI 373 S+ Sbjct: 393 TSL 395 Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 50/84 (59%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD + GY + DT GI T+ Sbjct: 6 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHIAGYDFIVIDTGGIDGTE 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE++ +++ L ++ AD++L L Sbjct: 66 EGVEEKMAEQSLLAIDEADIVLFL 89 >gi|187935025|ref|YP_001885401.1| GTP-binding protein EngA [Clostridium botulinum B str. Eklund 17B] gi|238691598|sp|B2THQ9|DER_CLOBB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|187723178|gb|ACD24399.1| ribosome-associated GTPase EngA [Clostridium botulinum B str. Eklund 17B] Length = 438 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 34/85 (40%), Positives = 52/85 (61%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET- 280 + I+G N GKS+LFN LA K ++IV D PG TRD + + + Y + DT GI T Sbjct: 6 VAIVGRPNVGKSTLFNKLAGKRISIVQDTPGVTRDRVYAEAEWLNYNFTMIDTGGIEPTN 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 DDI+ K+ ++ + +E AD+I+ + Sbjct: 66 DDIIMKQMRRQANIAIETADVIVFI 90 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I ++G N GKSSL N L ++ IV+D+ GTTRD + L+ E + DTAG+R Sbjct: 178 RIAMIGKPNVGKSSLINKLLGEERLIVSDVAGTTRDAIDSYLETEQGKFILIDTAGLRRK 237 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E+ + RT+ +E AD+ +L+ Sbjct: 238 SKVKEEIERYSVIRTYASIEKADVCILM 265 >gi|72080412|ref|YP_287470.1| GTP-binding protein EngA [Mycoplasma hyopneumoniae 7448] Length = 434 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 55/179 (30%), Positives = 87/179 (48%), Gaps = 29/179 (16%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 +K+ ++G NAGKSSL N L ++ +I+++IPGTTRD ++ + G ++I DTAGIR+ Sbjct: 172 FKLTLIGRPNAGKSSLLNWLLGENRSIISEIPGTTRDSISGFWKINGQTLEIIDTAGIRK 231 Query: 280 TDDIVEK---EGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTK 328 + E R F ++ ADL L+L + +F +N I + K Sbjct: 232 KSKLAESVDFYAFLRAFRSLDQADLTLILLDACHDFHHFDLRIAGYAFERNKPIILVINK 291 Query: 329 SDLYSTYT---EEYDH---------------LISSFTGEGLEELINKIKSILSNKFKKL 369 DL T +EY IS+ TGE + +LI+ I + +N KK+ Sbjct: 292 WDLIQKDTRTQQEYLRKIKGKFKFLDWAPVVFISAKTGEKIHKLIDVIFQVKNNLEKKI 350 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 28/93 (30%), Positives = 53/93 (56%), Gaps = 4/93 (4%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G SN GKS+LFN +A K ++I +PG TRD + ++ + + DT GI+ + Sbjct: 6 VALVGKSNVGKSTLFNRIAGKKISITDPLPGVTRDRIYQNVTWNQHSFLLIDTGGIQIEN 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL----KEINS 310 + + + + +E AD+++ + KEI+S Sbjct: 66 ENFQDLVRIQVQIALEEADILVWVLDGTKEIDS 98 >gi|219684291|ref|ZP_03539235.1| ribosome-associated GTPase EngA [Borrelia garinii PBr] gi|219672280|gb|EED29333.1| ribosome-associated GTPase EngA [Borrelia garinii PBr] Length = 433 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 37/98 (37%), Positives = 61/98 (62%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 K+ I+G N+GKS+L N L+ +++IV+D PGTTRD + L G + +I DTAGIR Sbjct: 175 KVGIIGKPNSGKSTLINYLSGNEISIVSDQPGTTRDFIKTKLTRNGKVFEIIDTAGIRRR 234 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 +++VE + R ++ D++ LL I+ K+E++ Sbjct: 235 ARVNEVVEYYSVNRALKVIDMVDIVFLL--IDVKEELT 270 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 47/89 (52%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K++I+G N GKS+LFN + +I G TRD++ + + K+ DT G Sbjct: 6 KVLIVGRPNVGKSALFNRILDTKRSITESTYGVTRDLVEEVCKVGSFNFKLIDTGGFTIL 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN 309 D + K +++ +E DLILL+ ++N Sbjct: 66 KDEISKIVVQKVLSSLEQVDLILLVLDVN 94 >gi|54307962|ref|YP_128982.1| GTP-binding protein EngA [Photobacterium profundum SS9] gi|81828838|sp|Q6LU45|DER_PHOPR RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|46912388|emb|CAG19180.1| putative GTP-binding protein [Photobacterium profundum SS9] Length = 493 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 44/143 (30%), Positives = 81/143 (56%), Gaps = 10/143 (6%) Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 L ++EE + + SS E + K D++ ++ + K+ I+G N GKS+L Sbjct: 166 LKGNDEEGLIDLSSVEDIE-----KADLTEEDAEAAYKRLQEQPIKLAIIGRPNVGKSTL 220 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE---TDDIVEKEGIKRT 292 N + ++ +V D+PGTTRD + I ++ +G + DTAG+R + +VEK + +T Sbjct: 221 TNRILGEERVVVYDMPGTTRDSIYIPMERDGQEYVLIDTAGVRRRKNMNQVVEKFSVIQT 280 Query: 293 FLEVENADLILLLKEINSKKEIS 315 VE+A+++LL+ I++++ IS Sbjct: 281 LKAVEDANVVLLI--IDARENIS 301 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 49/84 (58%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD +LE + + DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAELEEHEFIVIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE + +++ +E AD++L L Sbjct: 65 EGVETKMAEQSLAAIEEADVVLFL 88 >gi|319898104|ref|YP_004136301.1| gtp-binding protein [Haemophilus influenzae F3031] gi|309750447|gb|ADO80431.1| GTP-binding protein EngA [Haemophilus influenzae R2866] gi|317433610|emb|CBY81994.1| predicted GTP-binding protein [Haemophilus influenzae F3031] Length = 504 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 88/183 (48%), Gaps = 33/183 (18%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI I+G N GKS+L N + +D +V D+PGTTRD + I ++ +G + DTAG+R+ Sbjct: 217 KIAIVGRPNVGKSTLTNRILGEDRVVVFDMPGTTRDSIYIPMERDGQQYTLIDTAGVRKR 276 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNIDFI----------- 323 + VEK + +T +++A+++LL +E S +++S + FI Sbjct: 277 GKVHLAVEKFSVIKTLQAIQDANVVLLTIDARENISDQDLSL---LGFILNAGRSLVIVV 333 Query: 324 --FIGTKSDLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLP 370 + G D+ E D H IS+ G G+ L + IK + +K+ Sbjct: 334 NKWDGLDQDVKDRVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSIKEAYACATQKMT 393 Query: 371 FSI 373 S+ Sbjct: 394 TSL 396 Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 50/84 (59%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD + GY + DT GI T+ Sbjct: 6 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHIAGYDFIVIDTGGIDGTE 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE++ +++ L ++ AD++L L Sbjct: 66 EGVEEKMAEQSLLAIDEADIVLFL 89 >gi|144575266|gb|AAZ53447.2| GTP-binding protein EngA [Mycoplasma hyopneumoniae 7448] Length = 433 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 55/179 (30%), Positives = 87/179 (48%), Gaps = 29/179 (16%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 +K+ ++G NAGKSSL N L ++ +I+++IPGTTRD ++ + G ++I DTAGIR+ Sbjct: 171 FKLTLIGRPNAGKSSLLNWLLGENRSIISEIPGTTRDSISGFWKINGQTLEIIDTAGIRK 230 Query: 280 TDDIVEK---EGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTK 328 + E R F ++ ADL L+L + +F +N I + K Sbjct: 231 KSKLAESVDFYAFLRAFRSLDQADLTLILLDACHDFHHFDLRIAGYAFERNKPIILVINK 290 Query: 329 SDLYSTYT---EEYDH---------------LISSFTGEGLEELINKIKSILSNKFKKL 369 DL T +EY IS+ TGE + +LI+ I + +N KK+ Sbjct: 291 WDLIQKDTRTQQEYLRKIKGKFKFLDWAPVVFISAKTGEKIHKLIDVIFQVKNNLEKKI 349 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 28/93 (30%), Positives = 53/93 (56%), Gaps = 4/93 (4%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G SN GKS+LFN +A K ++I +PG TRD + ++ + + DT GI+ + Sbjct: 5 VALVGKSNVGKSTLFNRIAGKKISITDPLPGVTRDRIYQNVTWNQHSFLLIDTGGIQIEN 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL----KEINS 310 + + + + +E AD+++ + KEI+S Sbjct: 65 ENFQDLVRIQVQIALEEADILVWVLDGTKEIDS 97 >gi|145635317|ref|ZP_01791020.1| GTP-binding protein EngA [Haemophilus influenzae PittAA] gi|145267461|gb|EDK07462.1| GTP-binding protein EngA [Haemophilus influenzae PittAA] Length = 504 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 88/183 (48%), Gaps = 33/183 (18%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI I+G N GKS+L N + +D +V D+PGTTRD + I ++ +G + DTAG+R+ Sbjct: 217 KIAIVGRPNVGKSTLTNRILGEDRVVVFDMPGTTRDSIYIPMERDGQQYTLIDTAGVRKR 276 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNIDFI----------- 323 + VEK + +T +++A+++LL +E S +++S + FI Sbjct: 277 GKVHLAVEKFSVIKTLQAIQDANVVLLTIDARENISDQDLSL---LGFILNAGRSLVIVV 333 Query: 324 --FIGTKSDLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLP 370 + G D+ E D H IS+ G G+ L + IK + +K+ Sbjct: 334 NKWDGLDQDVKDRVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSIKEAYACATQKMT 393 Query: 371 FSI 373 S+ Sbjct: 394 TSL 396 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 50/84 (59%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD + GY + DT GI T+ Sbjct: 6 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHIAGYDFIVIDTGGIDGTE 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE++ +++ L ++ AD++L L Sbjct: 66 EGVEEKMAEQSLLAIDEADIVLFL 89 >gi|145637903|ref|ZP_01793547.1| GTP-binding protein EngA [Haemophilus influenzae PittHH] gi|145268903|gb|EDK08862.1| GTP-binding protein EngA [Haemophilus influenzae PittHH] Length = 503 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 88/183 (48%), Gaps = 33/183 (18%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI I+G N GKS+L N + +D +V D+PGTTRD + I ++ +G + DTAG+R+ Sbjct: 216 KIAIVGRPNVGKSTLTNRILGEDRVVVFDMPGTTRDSIYIPMERDGQQYTLIDTAGVRKR 275 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNIDFI----------- 323 + VEK + +T +++A+++LL +E S +++S + FI Sbjct: 276 GKVHLAVEKFSVIKTLQAIQDANVVLLTIDARENISDQDLSL---LGFILNAGRSLVIVV 332 Query: 324 --FIGTKSDLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLP 370 + G D+ E D H IS+ G G+ L + IK + +K+ Sbjct: 333 NKWDGLDQDVKDRVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSIKEAYACATQKMT 392 Query: 371 FSI 373 S+ Sbjct: 393 TSL 395 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 50/84 (59%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD + GY + DT GI T+ Sbjct: 6 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHIAGYDFIVIDTGGIDGTE 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE++ +++ L ++ AD++L L Sbjct: 66 EGVEEKMAEQSLLAIDEADIVLFL 89 >gi|33152292|ref|NP_873645.1| GTP-binding protein EngA [Haemophilus ducreyi 35000HP] gi|41017016|sp|Q7VM29|DER_HAEDU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|33148515|gb|AAP96034.1| conserved putative GTP-binding protein [Haemophilus ducreyi 35000HP] Length = 510 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 64/236 (27%), Positives = 106/236 (44%), Gaps = 49/236 (20%) Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234 D DF+ EED +L++ L +N S I KI I+G N GKS+ Sbjct: 191 DFDFNNEEDTA------LLDEALDEENSES----------IADKNIKIAIIGRPNVGKST 234 Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKR 291 L N + ++ +V D+PGTTRD + I ++ +G I DTAG+R+ I VEK + + Sbjct: 235 LTNRILGEERVVVYDMPGTTRDSIYIPMERDGQEYTIIDTAGVRKRGKINLAVEKFSVIK 294 Query: 292 TFLEVENADLILLL---KEINSKKEISFPKNIDFIFIGTKS-------------DLYSTY 335 T +++A+++LL +E S +++S + FI +S D+ Sbjct: 295 TLQAIQDANVVLLTIDAREGISDQDLSL---LGFILNAGRSLVIVVNKWDGLSYDIKEQV 351 Query: 336 TEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380 E D H IS+ G G+ L + +K + +K S+ + H+ Sbjct: 352 KSELDRRLDFIDFARVHFISALHGSGVGNLFDSVKEAYACATQKTSTSMLTRILHM 407 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 51/84 (60%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++ G+ + DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANIAGHDFIVIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + +E++ +++ L +E AD++L L Sbjct: 65 EGIEEKMAEQSLLAIEEADVVLFL 88 >gi|302380361|ref|ZP_07268831.1| ribosome-associated GTPase EngA [Finegoldia magna ACS-171-V-Col3] gi|303233791|ref|ZP_07320445.1| ribosome-associated GTPase EngA [Finegoldia magna BVS033A4] gi|302311851|gb|EFK93862.1| ribosome-associated GTPase EngA [Finegoldia magna ACS-171-V-Col3] gi|302495225|gb|EFL54977.1| ribosome-associated GTPase EngA [Finegoldia magna BVS033A4] Length = 438 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 34/85 (40%), Positives = 54/85 (63%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G +N GKS+LFN L KK +AI D PG TRD L ++ + + + DT G+ ++ Sbjct: 6 VAIVGRANVGKSTLFNKLIKKRIAITQDDPGVTRDRLYMEAEWQNKYFTVVDTGGLEPKS 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 ++I+ K K+T L +E AD+IL + Sbjct: 66 NEIITKNIKKQTELAIETADVILFM 90 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ ++G N GKSSL N L ++ IVTDI GTTRD + ++ +G DTAG+R+ Sbjct: 178 KVCLIGKPNVGKSSLINNLLNEERMIVTDIAGTTRDAIDSKINYKGNEYVFIDTAGLRKR 237 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 I VE+ + RT ++ +D+ +L+ Sbjct: 238 KKIDTEVERYSVVRTLSAIDRSDICVLM 265 >gi|169824551|ref|YP_001692162.1| GTP-binding protein [Finegoldia magna ATCC 29328] gi|238687753|sp|B0S1N2|DER_FINM2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|167831356|dbj|BAG08272.1| GTP-binding protein [Finegoldia magna ATCC 29328] Length = 438 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 34/85 (40%), Positives = 54/85 (63%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G +N GKS+LFN L KK +AI D PG TRD L ++ + + + DT G+ ++ Sbjct: 6 VAIVGRANVGKSTLFNKLIKKRIAITQDDPGVTRDRLYMEAEWQNKYFTVVDTGGLEPKS 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 ++I+ K K+T L +E AD+IL + Sbjct: 66 NEIITKNIKKQTELAIETADVILFM 90 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ ++G N GKSSL N L ++ IVTDI GTTRD + ++ +G DTAG+R+ Sbjct: 178 KVCLIGKPNVGKSSLINNLLNEERMIVTDIAGTTRDAIDSKINYKGNEYIFIDTAGLRKR 237 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 I VE+ + RT ++ +D+ +L+ Sbjct: 238 KKIDTEVERYSVVRTLSAIDRSDICVLM 265 >gi|297588533|ref|ZP_06947176.1| ribosome-associated GTPase EngA [Finegoldia magna ATCC 53516] gi|297573906|gb|EFH92627.1| ribosome-associated GTPase EngA [Finegoldia magna ATCC 53516] Length = 438 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 34/85 (40%), Positives = 54/85 (63%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G +N GKS+LFN L KK +AI D PG TRD L ++ + + + DT G+ ++ Sbjct: 6 VAIVGRANVGKSTLFNKLIKKRIAITQDDPGVTRDRLYMEAEWQNKYFTVVDTGGLEPKS 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 ++I+ K K+T L +E AD+IL + Sbjct: 66 NEIITKNIKKQTELAIETADVILFM 90 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ ++G N GKSSL N L ++ IVTDI GTTRD + ++ +G DTAG+R+ Sbjct: 178 KVCLIGKPNVGKSSLINNLLNEERMIVTDIAGTTRDAIDSKINYKGNEYIFIDTAGLRKR 237 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 I VE+ + RT ++ +D+ +L+ Sbjct: 238 RKIDTEVERYSVVRTLSAIDRSDICVLM 265 >gi|309972741|gb|ADO95942.1| GTP-binding protein EngA [Haemophilus influenzae R2846] Length = 504 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 88/183 (48%), Gaps = 33/183 (18%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI I+G N GKS+L N + +D +V D+PGTTRD + I ++ +G + DTAG+R+ Sbjct: 217 KIAIVGRPNVGKSTLTNRILGEDRVVVFDMPGTTRDSIYIPMERDGQQYTLIDTAGVRKR 276 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNIDFI----------- 323 + VEK + +T +++A+++LL +E S +++S + FI Sbjct: 277 GKVHLAVEKFSVIKTLQAIQDANVVLLTIDARENISDQDLSL---LGFILNAGRSLVIVV 333 Query: 324 --FIGTKSDLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLP 370 + G D+ E D H IS+ G G+ L + IK + +K+ Sbjct: 334 NKWDGLDQDVKDRVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSIKEAYACATQKMT 393 Query: 371 FSI 373 S+ Sbjct: 394 TSL 396 Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 50/84 (59%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD + GY + DT GI T+ Sbjct: 6 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHIAGYDFIVIDTGGIDGTE 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE++ +++ L ++ AD++L L Sbjct: 66 EGVEEKMAEQSLLAIDEADIVLFL 89 >gi|1162972|gb|AAB02035.1| similar to thdF genes from E. coli, B. subtilis and P. putida; possible involvement in thiophene and furan oxidation [Rhodobacter sphaeroides] Length = 98 Score = 65.9 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 35/100 (35%), Positives = 60/100 (60%), Gaps = 6/100 (6%) Query: 6 ETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFP--RKASLRYFFGLDGRILDK 63 +TI+A+++ + ++++RLSGP + + P P R A+LR +G +LD+ Sbjct: 2 DTIYALASARGKAGVAVLRLSGPRSHEAVQAF---GVPLPSLRHAALRRL-TWNGEVLDE 57 Query: 64 GLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP 103 L+++F + SFTGE SAE H+HG A V+ +L L+ +P Sbjct: 58 ALVLLFGAGASFTGETSAELHLHGSPAAVSSVLRVLSGLP 97 >gi|224541354|ref|ZP_03681893.1| hypothetical protein CATMIT_00514 [Catenibacterium mitsuokai DSM 15897] gi|224525688|gb|EEF94793.1| hypothetical protein CATMIT_00514 [Catenibacterium mitsuokai DSM 15897] Length = 435 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 36/88 (40%), Positives = 54/88 (61%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKSSL NA+ +D IV++I GTTRD + + +GY +I DTAG+R+ Sbjct: 176 KVSIIGRPNVGKSSLTNAILGEDRVIVSNIEGTTRDAIDTAFEKDGYKYRIIDTAGMRKK 235 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +EK + R VE +D+IL + Sbjct: 236 GKVYENIEKYSVLRALKAVEQSDVILCV 263 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G +N GKS+LFN + + V+IV D+PG TRD + +I DT GI + Sbjct: 6 VAIVGRANVGKSTLFNRIIGERVSIVEDVPGVTRDRIYAKASWLTKEFRIIDTGGIELKN 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + + +E AD+I+ + Sbjct: 66 ADFTEQIKTQAEIAIEEADVIIFV 89 >gi|307245234|ref|ZP_07527325.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307254181|ref|ZP_07536026.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258646|ref|ZP_07540381.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306853878|gb|EFM86092.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306862881|gb|EFM94830.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867303|gb|EFM99156.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 506 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 87/183 (47%), Gaps = 33/183 (18%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI I+G N GKS+L N + +D +V D+PGTTRD + I ++ +G I DTAG+R+ Sbjct: 219 KIAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMERDGQQYTIIDTAGVRKR 278 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNIDFI----------- 323 + VEK + +T +++A+++LL +E S +++S + FI Sbjct: 279 GKVNLAVEKFSVIKTLQAIQDANVVLLTIDAREGISDQDLSL---LGFILNAGRSLVIVV 335 Query: 324 --FIGTKSDLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLP 370 + G D+ E D H IS+ G G+ L + +K + +K Sbjct: 336 NKWDGLSQDIKDQVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSVKEAYACATQKTS 395 Query: 371 FSI 373 S+ Sbjct: 396 TSM 398 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 51/84 (60%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++ GY + DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANIAGYDFIVIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE++ +++ L +E AD++L L Sbjct: 65 EGVEEKMAEQSLLAIEEADVVLFL 88 >gi|116075028|ref|ZP_01472288.1| GTP-binding protein EngA [Synechococcus sp. RS9916] gi|116067225|gb|EAU72979.1| GTP-binding protein EngA [Synechococcus sp. RS9916] Length = 455 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 54/88 (61%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSL NA+ + AIV+ I GTTRD + +++ +G K+ DTAGIR Sbjct: 179 QMAIVGRPNVGKSSLLNAICGEQRAIVSPIRGTTRDTIDTNIERQGMPWKLVDTAGIRRR 238 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + E GI R+F +E +D+ +L+ Sbjct: 239 RSVNYGPEFFGINRSFKAIERSDVCVLV 266 Score = 43.5 bits (101), Expect = 0.063, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 31/61 (50%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+L N L + AIV D PG TRD D K+ DT G+ D Sbjct: 6 VAIIGRPNVGKSTLVNRLCRSREAIVHDEPGVTRDRTYQDGYWGDREFKVVDTGGLVFDD 65 Query: 282 D 282 D Sbjct: 66 D 66 >gi|291276972|ref|YP_003516744.1| putative GTP-binding protein [Helicobacter mustelae 12198] gi|290964166|emb|CBG40011.1| putative GTP-binding protein [Helicobacter mustelae 12198] Length = 466 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 40/86 (46%), Positives = 53/86 (61%), Gaps = 3/86 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI ILG N GKSSLFN LA++ +AI +D+ GTT DV + LEG+ ++I DT GI + Sbjct: 3 KIAILGKPNVGKSSLFNRLARERIAITSDVSGTTCDVNKKTIQLEGHPLQILDTGGIDKN 62 Query: 281 DDIVEKEGIKR-TFLEVENADLILLL 305 + IK+ F E ADLIL + Sbjct: 63 NQYF--SSIKKFAFQAAEMADLILYV 86 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/92 (39%), Positives = 56/92 (60%), Gaps = 2/92 (2%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI I+G N GKSSL NAL KD ++V+ I GTT D + + + Y ++ DTAG+R Sbjct: 197 KIGIIGRVNVGKSSLLNALVGKDRSVVSPIEGTTLDPVDEGIIYKDYQLEFVDTAGLRRR 256 Query: 281 DDI--VEKEGIKRTFLEVENADLILLLKEINS 310 I +EK + RT +E +D+ LL+ ++++ Sbjct: 257 GKIRGLEKFALDRTGKMLEKSDIALLVLDVST 288 >gi|187478830|ref|YP_786854.1| GTP-binding protein EngA [Bordetella avium 197N] gi|115423416|emb|CAJ49950.1| GTP-binding protein [Bordetella avium 197N] Length = 451 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 38/115 (33%), Positives = 70/115 (60%), Gaps = 6/115 (5%) Query: 204 SSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD 263 + I+ + GE+ ++ K+ I+G N GKS+L N L ++ I D+PGTTRD + I+ + Sbjct: 170 ADEIADAEEGEV-QHRIKLAIVGRPNVGKSTLINTLMGEERVIAFDMPGTTRDAIEIEFE 228 Query: 264 LEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 +G + DTAG+R+ + VEK + +T +E ++++LL+ ++++ EIS Sbjct: 229 RDGRQYTLIDTAGLRKRGKVFEAVEKFSVIKTLQAIEASNVVLLM--LDAQSEIS 281 Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 9/89 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D G TRD + + + DT G Sbjct: 7 VALVGRPNVGKSTLFNRLTRSRAALVADYSGLTRDRHYGEGRVGDIPFIVIDTGGF---- 62 Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305 + V K+GI ++T + AD+++ L Sbjct: 63 EPVAKDGILAEMARQTRQAIAEADVVVFL 91 >gi|269837313|ref|YP_003319541.1| small GTP-binding protein [Sphaerobacter thermophilus DSM 20745] gi|269786576|gb|ACZ38719.1| small GTP-binding protein [Sphaerobacter thermophilus DSM 20745] Length = 445 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 37/87 (42%), Positives = 51/87 (58%), Gaps = 3/87 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS+L NAL + IV+ IPGTTRD + ++ G V + DTAGIR Sbjct: 184 IAIVGRPNVGKSALLNALLGQSRQIVSSIPGTTRDAVDTEITWAGNRVVLVDTAGIRRPG 243 Query: 282 DI---VEKEGIKRTFLEVENADLILLL 305 I +EK + R+ VE AD+ +L+ Sbjct: 244 RIERGIEKYSVLRSTRAVERADVAVLV 270 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 7/91 (7%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN L + AIV D+PGTTRD + + G + DT G+ Sbjct: 6 VAIVGRPNTGKSTLFNRLVGERRAIVEDLPGTTRDRIYAEASWGGVTFDVVDTGGLLSEQ 65 Query: 282 DI-------VEKEGIKRTFLEVENADLILLL 305 +I + + ++ L +E AD+I+ + Sbjct: 66 EIERASAAEIAQATQEQAELAIEQADVIVFM 96 >gi|328950011|ref|YP_004367346.1| GTP-binding protein engA [Marinithermus hydrothermalis DSM 14884] gi|328450335|gb|AEB11236.1| GTP-binding protein engA [Marinithermus hydrothermalis DSM 14884] Length = 431 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 34/86 (39%), Positives = 55/86 (63%), Gaps = 1/86 (1%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G NAGKSSL NA+ ++ IV++ PGTTRD + ++ D G + DTAGIR+ Sbjct: 176 RLAIIGRPNAGKSSLMNAILGEERVIVSEQPGTTRDAIDVEFDYGGQRFVLVDTAGIRKR 235 Query: 281 DDI-VEKEGIKRTFLEVENADLILLL 305 + VE I+R+ + AD+++L+ Sbjct: 236 PETAVEYFAIQRSHRVIREADVVVLV 261 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 5/87 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+VI+G N GKSSL+N L + A+V D PG TRD+ ++ + K+ DT G+ Sbjct: 3 KVVIVGRPNVGKSSLYNRLLGRRDAVVADEPGVTRDLKEAVIETDRGRFKLVDTGGLWSG 62 Query: 281 DDIVEK--EGIKRTFLEVENADLILLL 305 D K E + R +++ADL+L L Sbjct: 63 DAWEPKIQEKVDRA---IQDADLVLFL 86 >gi|194476538|ref|YP_002048717.1| GTP-binding protein EngA [Paulinella chromatophora] gi|171191545|gb|ACB42507.1| GTP-binding protein EngA [Paulinella chromatophora] Length = 456 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 36/88 (40%), Positives = 53/88 (60%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSL NA+ + AIV+ I GTTRD + ++ EGY ++ DTAGIR Sbjct: 178 QLAIVGRPNVGKSSLLNAICGETRAIVSQIRGTTRDTIDTYVEREGYHWRLIDTAGIRRR 237 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + E I R+F +E +D+ LL+ Sbjct: 238 RSVDYGPELFSINRSFKAIERSDVCLLI 265 >gi|310827223|ref|YP_003959580.1| hypothetical protein ELI_1631 [Eubacterium limosum KIST612] gi|308738957|gb|ADO36617.1| hypothetical protein ELI_1631 [Eubacterium limosum KIST612] Length = 439 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 53/88 (60%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI ++G NAGKS+L N + D IV+D+PGTTRD + ++ G + DTAG+R+ Sbjct: 179 KIAVIGKPNAGKSTLINKMVGHDRLIVSDVPGTTRDAIDTEVRFNGRDYTLIDTAGLRKK 238 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 I +E+ I R V+ +D++L+L Sbjct: 239 KKIYEDIERYSIVRAIAAVDRSDVVLVL 266 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 33/86 (38%), Positives = 51/86 (59%), Gaps = 3/86 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI--RE 279 + ++G N GKS+LFN L + +AIV D PG TRD + D + + + + DT GI Sbjct: 6 VAVVGRPNVGKSTLFNKLVGERIAIVEDTPGVTRDRIIADAEWQNHHFTLIDTGGIEPHT 65 Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305 DDI+ + ++ L ++ ADLI+LL Sbjct: 66 KDDILLQMRVQAE-LAIDMADLIVLL 90 >gi|187918374|ref|YP_001883937.1| GTP-binding protein EngA [Borrelia hermsii DAH] gi|119861222|gb|AAX17017.1| GTP-binding protein [Borrelia hermsii DAH] Length = 438 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 41/115 (35%), Positives = 63/115 (54%), Gaps = 9/115 (7%) Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 +FLKN + GKL KI I+G N+GKS+L N LA +V+IV+ I GTTRD Sbjct: 162 IFLKNSV------GKLASEDNTDVKIGIIGKPNSGKSTLINFLAGDEVSIVSPIAGTTRD 215 Query: 257 VLTIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEI 308 + G + ++ DTAGIR +++VE + R ++ D++ LL ++ Sbjct: 216 FIKARFQRNGKIFELIDTAGIRRRARVNELVEHYSVSRALRVIDMVDIVFLLVDV 270 Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 33/61 (54%) Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 ++N ++I G N GKS+LFN L + +I ++ G TRD++ ++ Y + D Sbjct: 6 VQNYKSVLIAGRPNVGKSTLFNKLLSSNRSITDEVYGVTRDLVKEVCTVDSYKFYLIDAG 65 Query: 276 G 276 G Sbjct: 66 G 66 >gi|134094495|ref|YP_001099570.1| GTP-binding protein EngA [Herminiimonas arsenicoxydans] gi|166198721|sp|A4G4K6|DER_HERAR RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|133738398|emb|CAL61443.1| GTP-binding protein EngA [Herminiimonas arsenicoxydans] Length = 447 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/124 (33%), Positives = 68/124 (54%), Gaps = 10/124 (8%) Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254 DI F + + + K I ++ I+G N GKS+L N L ++ I D+PGTT Sbjct: 161 DIAFAQRPPEEEVPESKDRSI-----RLAIVGRPNVGKSTLVNTLLGEERVIAFDLPGTT 215 Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSK 311 RD + I + EG L + DTAGIR + +EK + +T + A+++LLL ++++ Sbjct: 216 RDSIEIPFEREGKLYTLIDTAGIRRRGKVFEAIEKFSVVKTLQSISEANVVLLL--LDAQ 273 Query: 312 KEIS 315 ++IS Sbjct: 274 QDIS 277 Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 9/89 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L + A+V D+PG TRD + + + DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRMGERPFLVIDTGGF---- 60 Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305 + V KEGI K+T V AD+++ + Sbjct: 61 EPVAKEGIMHEMAKQTKQAVAEADVVIFI 89 >gi|317968893|ref|ZP_07970283.1| GTP-binding protein Der [Synechococcus sp. CB0205] Length = 454 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 36/88 (40%), Positives = 53/88 (60%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSL NA+ + AIV+ I GTTRD + ++ EG K+ DTAGIR Sbjct: 178 QMAIVGRPNVGKSSLLNAVCGEKRAIVSPIRGTTRDTIDTSIEREGKPWKLLDTAGIRRR 237 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + E GI R+F +E +D+ +L+ Sbjct: 238 RSVNYGPEYFGINRSFKAIERSDVCVLV 265 Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 30/61 (49%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+L N L + AIV D PG TRD K+ DT G+ D Sbjct: 6 VAIIGRPNVGKSTLVNRLCRSREAIVHDEPGVTRDRTYQQGYWRDRHFKVVDTGGLVFDD 65 Query: 282 D 282 D Sbjct: 66 D 66 >gi|312879956|ref|ZP_07739756.1| ribosome-associated GTPase EngA [Aminomonas paucivorans DSM 12260] gi|310783247|gb|EFQ23645.1| ribosome-associated GTPase EngA [Aminomonas paucivorans DSM 12260] Length = 447 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 48/182 (26%), Positives = 91/182 (50%), Gaps = 29/182 (15%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 ++ ++G N GKSSLFN+L ++ +V+DIPGTTRD + L +G ++I DTAG+R Sbjct: 177 RVALVGRPNVGKSSLFNSLLGEERTLVSDIPGTTRDTVDSLLVWKGMNLRIMDTAGLRRK 236 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI-----DFIFIGTKS 329 D +E RTF V+ +D+ ++L +E+ ++++ ++ + K Sbjct: 237 SRVDGALEYYSTVRTFQAVDRSDVTVVLLDAQELLAEQDKRLVGHVLDRGKGLVLGVNKW 296 Query: 330 DLYSTYTEEYDHL------------------ISSFTGEGLEELINKIKSILSNKFKKLPF 371 DL + D + +S+ TG G++ ++ +K++ N+ + L Sbjct: 297 DLLPPTEDLGDRIRDRIREELPLVRHAPVVFLSAKTGRGVQRVLPYVKTVDENRRRHLKT 356 Query: 372 SI 373 S+ Sbjct: 357 SV 358 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 28/56 (50%), Positives = 35/56 (62%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 I ++G N GKSSLFN L K +AIV DIPG TRD L + + +G + DT GI Sbjct: 4 IALVGRPNVGKSSLFNRLIGKRLAIVDDIPGVTRDRLYGEAEWDGKRFYLVDTGGI 59 >gi|317132122|ref|YP_004091436.1| ribosome-associated GTPase EngA [Ethanoligenens harbinense YUAN-3] gi|315470101|gb|ADU26705.1| ribosome-associated GTPase EngA [Ethanoligenens harbinense YUAN-3] Length = 441 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 54/88 (61%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 ++ ++G NAGKSSL N +A ++ +V+DIPGTTRD + ++ E DTAGIR Sbjct: 178 RVAVIGKPNAGKSSLVNRIAGEERMLVSDIPGTTRDAVDTRIENEYGTFVFVDTAGIRRH 237 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305 + + VE+ + R F VE AD+ +++ Sbjct: 238 SKVQEAVERYSVMRAFSAVERADVCVMM 265 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 51/90 (56%), Gaps = 1/90 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN L + ++IV D PG TRD + + G+ ++DT GI Sbjct: 6 VAIVGRPNVGKSTLFNKLVGRRISIVEDTPGVTRDRIYAPCEWCGHTFLLADTGGIEMKS 65 Query: 282 DIVEKEGIK-RTFLEVENADLILLLKEINS 310 D V GI+ + ++ AD+I+ + ++ S Sbjct: 66 DDVFLSGIREQAKAAIDTADVIIFMTDLRS 95 >gi|59711240|ref|YP_204016.1| GTP-binding protein EngA [Vibrio fischeri ES114] gi|197336109|ref|YP_002155390.1| ribosome-associated GTPase EngA [Vibrio fischeri MJ11] gi|81311005|sp|Q5E768|DER_VIBF1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|238690264|sp|B5FAX6|DER_VIBFM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|59479341|gb|AAW85128.1| predicted GTP-binding protein [Vibrio fischeri ES114] gi|197317599|gb|ACH67046.1| ribosome-associated GTPase EngA [Vibrio fischeri MJ11] Length = 500 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 37/98 (37%), Positives = 63/98 (64%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ EG + DTAG+R Sbjct: 212 KLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMEREGQEYVLIDTAGVRRR 271 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 ++ VEK + +T VE+A+++LL+ I++++ IS Sbjct: 272 GRINETVEKFSVIKTLKAVEDANVVLLV--IDARENIS 307 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD LE + DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAKLEEQEFILIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 VE + +++ +E AD++L + Sbjct: 65 QGVETKMAEQSLAAIEEADVVLFM 88 >gi|186682120|ref|YP_001865316.1| GTP-binding protein EngA [Nostoc punctiforme PCC 73102] gi|238691263|sp|B2J1L2|DER_NOSP7 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|186464572|gb|ACC80373.1| small GTP-binding protein [Nostoc punctiforme PCC 73102] Length = 456 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 37/91 (40%), Positives = 53/91 (58%), Gaps = 3/91 (3%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 N K+ I+G N GKSSL NA ++ AIV+ I GTTRD + ++ +G ++ DTAGI Sbjct: 175 NEIKVAIVGRPNVGKSSLLNAFVGEERAIVSPISGTTRDAIDTVIERDGQTYRLIDTAGI 234 Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLL 305 R+ I E I R F + AD++LL+ Sbjct: 235 RKKKHIEYGTEFFSINRAFKAIRRADVVLLV 265 Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 32/61 (52%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+L N LA + AIV D PG TRD + G + DT G+ D Sbjct: 6 VAIIGRPNVGKSTLVNRLAGEQTAIVHDEPGVTRDRTYMPAFWNGREFLVVDTGGLVFND 65 Query: 282 D 282 D Sbjct: 66 D 66 >gi|307249625|ref|ZP_07531611.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306858323|gb|EFM90393.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 506 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 37/98 (37%), Positives = 62/98 (63%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G I DTAG+R+ Sbjct: 219 KIAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGQQYTIIDTAGVRKR 278 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + VEK + +T +++A+++LL I+++K IS Sbjct: 279 GKVNLAVEKFSVIKTLQAIQDANVVLL--TIDARKGIS 314 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 51/84 (60%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++ G+ + DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANIAGHDFIVIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE++ +++ L +E AD++L L Sbjct: 65 EGVEEKMAEQSLLAIEEADVVLFL 88 >gi|119476373|ref|ZP_01616724.1| predicted GTPase [marine gamma proteobacterium HTCC2143] gi|119450237|gb|EAW31472.1| predicted GTPase [marine gamma proteobacterium HTCC2143] Length = 466 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 36/90 (40%), Positives = 55/90 (61%), Gaps = 3/90 (3%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G KI I+G N GKS+L N L ++ IV D PGTTRD + ID + EG + DTAG+R Sbjct: 177 GTKIAIIGRPNVGKSTLVNRLLGEERVIVFDHPGTTRDSIYIDYEREGQPYTLIDTAGVR 236 Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLL 305 ++ VEK I + +++A++++L+ Sbjct: 237 RRKNVRETVEKFSIVKALKAIDDANVVVLV 266 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 45/84 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L K A+V ++PG TRD + + + DT GI + Sbjct: 5 IALVGRPNVGKSTLFNRLTKTRDALVANLPGLTRDRKYGEARVGSRRFIVIDTGGITGEE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + ++ +++ L V+ AD + L Sbjct: 65 EGIDVAMAQQSMLAVDEADAVFFL 88 >gi|251792908|ref|YP_003007634.1| GTP-binding protein EngA [Aggregatibacter aphrophilus NJ8700] gi|247534301|gb|ACS97547.1| GTP-binding protein EngA [Aggregatibacter aphrophilus NJ8700] Length = 509 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 36/98 (36%), Positives = 62/98 (63%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI I+G N GKS+L N + +D +V D+PGTTRD + I ++ +G + DTAG+R+ Sbjct: 222 KIAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMERDGQQYTLIDTAGVRKR 281 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + VEK + +T +++A+++LL I++++ IS Sbjct: 282 GKVHLAVEKFSVIKTLQAIQDANVVLLT--IDARENIS 317 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/84 (39%), Positives = 50/84 (59%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD L GY + DT GI T+ Sbjct: 6 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHLAGYDFIVIDTGGIDGTE 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE++ +++ L +E AD++L L Sbjct: 66 EGVEEKMAEQSLLAIEEADIVLFL 89 >gi|300869581|ref|ZP_07114162.1| GTP-binding protein engA [Oscillatoria sp. PCC 6506] gi|300332449|emb|CBN59362.1| GTP-binding protein engA [Oscillatoria sp. PCC 6506] Length = 454 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/111 (38%), Positives = 64/111 (57%), Gaps = 6/111 (5%) Query: 199 LKNDISSHISQ-GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257 L +++ SH+ G+L EI K+ I+G N GKSSL NA + AIV+ I GTTRD Sbjct: 157 LLDELISHLPAVGELPEIEET--KVAIVGRPNVGKSSLLNAFLGETRAIVSPISGTTRDA 214 Query: 258 LTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305 + ++ G ++ DTAGIR+ ++ E GI R F + AD++LL+ Sbjct: 215 IDTVVERNGTTYRLIDTAGIRKKKNVEYGPEFFGINRAFKAIRRADVVLLV 265 >gi|153838555|ref|ZP_01991222.1| GTP-binding protein EngA [Vibrio parahaemolyticus AQ3810] gi|149748070|gb|EDM58929.1| GTP-binding protein EngA [Vibrio parahaemolyticus AQ3810] Length = 498 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 37/98 (37%), Positives = 63/98 (64%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G I DTAG+R Sbjct: 211 KLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVIIDTAGVRRR 270 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 ++ VEK + +T VE+A+++LL+ I++++ IS Sbjct: 271 GRINETVEKFSVVKTLKAVEDANVVLLV--IDARENIS 306 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 3/86 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD--VLTIDLDLEGYLVKISDTAGIRE 279 + ++G N GKS+LFN L + A+V D PG TRD LD E + I DT GI Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQARLDEEHEFIVI-DTGGIDG 63 Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305 T++ VE + +++ ++ AD++L L Sbjct: 64 TEEGVETKMAEQSLAAIDEADVVLFL 89 >gi|282895428|ref|ZP_06303565.1| GTP-binding protein engA [Raphidiopsis brookii D9] gi|281199461|gb|EFA74324.1| GTP-binding protein engA [Raphidiopsis brookii D9] Length = 453 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 36/88 (40%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKSSL NA ++ AIV+ I GTTRD + ++ EG ++ DTAGIR+ Sbjct: 178 KVAIVGRPNVGKSSLLNAFVGEERAIVSPISGTTRDTIDTLIEREGQAYRLIDTAGIRKK 237 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + E I R F + AD++LL+ Sbjct: 238 KHVEYGTEFFSINRAFKAIRRADVVLLV 265 Score = 40.0 bits (92), Expect = 0.81, Method: Compositional matrix adjust. Identities = 18/35 (51%), Positives = 21/35 (60%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 + I+G N GKS+ N LA AIV D PG TRD Sbjct: 6 VAIIGRPNVGKSTFVNRLAGDQTAIVHDEPGVTRD 40 >gi|28897386|ref|NP_796991.1| GTP-binding protein EngA [Vibrio parahaemolyticus RIMD 2210633] gi|308094331|ref|ZP_05888700.2| ribosome-associated GTPase EngA [Vibrio parahaemolyticus AN-5034] gi|308095608|ref|ZP_05907112.2| ribosome-associated GTPase EngA [Vibrio parahaemolyticus Peru-466] gi|308125630|ref|ZP_05776379.2| ribosome-associated GTPase EngA [Vibrio parahaemolyticus K5030] gi|308126072|ref|ZP_05907679.2| ribosome-associated GTPase EngA [Vibrio parahaemolyticus AQ4037] gi|31340057|sp|Q87S12|DER_VIBPA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|28805598|dbj|BAC58875.1| GTP-binding protein [Vibrio parahaemolyticus RIMD 2210633] gi|308086906|gb|EFO36601.1| ribosome-associated GTPase EngA [Vibrio parahaemolyticus Peru-466] gi|308092889|gb|EFO42584.1| ribosome-associated GTPase EngA [Vibrio parahaemolyticus AN-5034] gi|308106660|gb|EFO44200.1| ribosome-associated GTPase EngA [Vibrio parahaemolyticus AQ4037] gi|308113011|gb|EFO50551.1| ribosome-associated GTPase EngA [Vibrio parahaemolyticus K5030] Length = 498 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 37/98 (37%), Positives = 63/98 (64%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G I DTAG+R Sbjct: 211 KLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVIIDTAGVRRR 270 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 ++ VEK + +T VE+A+++LL+ I++++ IS Sbjct: 271 GRINETVEKFSVVKTLKAVEDANVVLLV--IDARENIS 306 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 3/86 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD--VLTIDLDLEGYLVKISDTAGIRE 279 + ++G N GKS+LFN L + A+V D PG TRD LD E + I DT GI Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQARLDEEHEFIVI-DTGGIDG 63 Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305 T++ VE + +++ ++ AD++L L Sbjct: 64 TEEGVETKMAEQSLAAIDEADVVLFL 89 >gi|226939618|ref|YP_002794691.1| GTP-binding protein engA [Laribacter hongkongensis HLHK9] gi|226714544|gb|ACO73682.1| GTP-binding protein engA [Laribacter hongkongensis HLHK9] Length = 415 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 54/88 (61%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 K I+G N GKS+L NA+ ++ I D PGTTRD + ID + EG I DTAG+R Sbjct: 133 KFAIIGRPNVGKSTLVNAILGEERVIAFDHPGTTRDSIYIDFEREGKTYTIIDTAGVRRR 192 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305 + D+ +EK + +T +E+A++ +L+ Sbjct: 193 AKIDESIEKFSVVKTLQAIEDANVCVLV 220 >gi|27262166|gb|AAN87364.1| GTP-binding protein [Heliobacillus mobilis] Length = 445 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 56/88 (63%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 KI ++G N GKSS+ NA+ ++ IV++IPGTTRD + + EG + DTAG+R Sbjct: 182 KIAVIGKPNVGKSSMVNAILGEERVIVSNIPGTTRDAIDTPFEREGKHYVLIDTAGMRRK 241 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305 + D+ VE+ + R+ V+ +D++L++ Sbjct: 242 GKIDESVERYSVMRSLRAVDRSDVVLMV 269 Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 30/56 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 + ++G N GKS+LFN L VAIV D PG TRD L + + DT G+ Sbjct: 9 VAVVGRPNVGKSTLFNRLTGGRVAIVEDRPGVTRDRLYRNAKWLNREFTLVDTGGL 64 >gi|332288185|ref|YP_004419037.1| GTP-binding protein EngA [Gallibacterium anatis UMN179] gi|330431081|gb|AEC16140.1| GTP-binding protein EngA [Gallibacterium anatis UMN179] Length = 507 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 37/98 (37%), Positives = 62/98 (63%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI I+G N GKS+L N + +D +V D+PGTTRD + I ++ +G I DTAG+R+ Sbjct: 220 KIAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMERDGQQYTIIDTAGVRKR 279 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + VEK + +T +++A+++LL I++++ IS Sbjct: 280 GKVTLTVEKFSVIKTLQAIQDANVVLLT--IDAREGIS 315 Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L + A+V + PG TRD L G + DT GI ++ Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVANFPGLTRDRKYGQGQLNGTEFIVIDTGGIDGSE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 +E++ +++ L ++ AD++L L Sbjct: 65 QGIEEKMAEQSLLAIDEADIVLFL 88 >gi|328472592|gb|EGF43455.1| GTP-binding protein Der [Vibrio parahaemolyticus 10329] Length = 498 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 37/98 (37%), Positives = 63/98 (64%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G I DTAG+R Sbjct: 211 KLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVIIDTAGVRRR 270 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 ++ VEK + +T VE+A+++LL+ I++++ IS Sbjct: 271 GRINETVEKFSVVKTLKAVEDANVVLLV--IDARENIS 306 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 3/86 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD--VLTIDLDLEGYLVKISDTAGIRE 279 + ++G N GKS+LFN L + A+V D PG TRD LD E + I DT GI Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQARLDEEHEFIVI-DTGGIDG 63 Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305 T++ VE + +++ ++ AD++L L Sbjct: 64 TEEGVETKMAEQSLAAIDEADVVLFL 89 >gi|254506757|ref|ZP_05118897.1| GTP-binding protein EngA [Vibrio parahaemolyticus 16] gi|219550338|gb|EED27323.1| GTP-binding protein EngA [Vibrio parahaemolyticus 16] Length = 494 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 54/179 (30%), Positives = 97/179 (54%), Gaps = 17/179 (9%) Query: 144 RLSMEGMSGELSSLYGQWIDKLTHI--RSFIEADLDFS--EEEDVQNFSSKEVLNDILFL 199 +L +E M ++++ +G+ + L + F E LD S E ED+ F +E Sbjct: 134 QLGVENMY-QIAAAHGRGVTALIELALNPFAEKLLDESKGELEDLTEFEDEEE------- 185 Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259 K D S ++ + + K+ I+G N GKS+L N + ++ +V D+PGTTRD + Sbjct: 186 KLDYSEEEAEEEFTRLQDQPIKLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIY 245 Query: 260 IDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 I ++ +G + DTAG+R ++ VEK + +T VE+A+++LL+ I++++ IS Sbjct: 246 IPMERDGREYVLIDTAGVRRRTRINETVEKFSVVKTLKAVEDANVVLLV--IDARENIS 302 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD L + + DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE + +++ ++ AD++L + Sbjct: 65 EGVETKMAQQSLAAIDEADVVLFM 88 >gi|170767411|ref|ZP_02901864.1| GTP-binding protein EngA [Escherichia albertii TW07627] gi|170123745|gb|EDS92676.1| GTP-binding protein EngA [Escherichia albertii TW07627] Length = 499 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 36/98 (36%), Positives = 63/98 (64%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + +D +V D+PGTTRD + I ++ +G + DTAG+R+ Sbjct: 213 KLAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 272 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D VEK + +T +E+A++++L+ I++++ IS Sbjct: 273 GKITDAVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 308 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG DT GI T+ Sbjct: 14 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 73 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE +++ L +E AD++L + Sbjct: 74 EGVETRMAEQSLLAIEEADVVLFM 97 >gi|282900427|ref|ZP_06308377.1| Small GTP-binding protein domain protein [Cylindrospermopsis raciborskii CS-505] gi|281194740|gb|EFA69687.1| Small GTP-binding protein domain protein [Cylindrospermopsis raciborskii CS-505] Length = 453 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 36/88 (40%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKSSL NA ++ AIV+ I GTTRD + ++ EG ++ DTAGIR+ Sbjct: 178 KVAIVGRPNVGKSSLLNAFVGEERAIVSPISGTTRDTIDTLIEREGQAYRLIDTAGIRKK 237 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + E I R F + AD++LL+ Sbjct: 238 KHVEYGTEFFSINRAFKAIRRADVVLLV 265 Score = 40.8 bits (94), Expect = 0.45, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 29/61 (47%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+ N LA AIV D PG TRD + + DT G+ D Sbjct: 6 VAIIGRPNVGKSTFVNRLAGDQTAIVHDEPGVTRDRTYRPAFWQNREFLVVDTGGLVFND 65 Query: 282 D 282 D Sbjct: 66 D 66 >gi|307718980|ref|YP_003874512.1| GTP-binding protein EngA [Spirochaeta thermophila DSM 6192] gi|306532705|gb|ADN02239.1| GTP-binding protein EngA [Spirochaeta thermophila DSM 6192] Length = 450 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 35/87 (40%), Positives = 51/87 (58%), Gaps = 3/87 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET- 280 + ILG N GKS+L N L ++ A+V+D PGTTRD+L G +I DTAGIR Sbjct: 194 VAILGKPNTGKSTLLNTLLGEERALVSDAPGTTRDLLEGRFQYRGRWFRIVDTAGIRRRS 253 Query: 281 --DDIVEKEGIKRTFLEVENADLILLL 305 +D +E ++R+ +E A ++ LL Sbjct: 254 RIEDDLEFYSVRRSLKVIEEAHVVFLL 280 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RE 279 ++VI+G N GKS+LFN L + AI PG TRD + +L G V + DT GI E Sbjct: 19 RVVIVGRPNVGKSTLFNRLIGRRKAITHPRPGVTRDAVEETWELGGGRVLLVDTGGITSE 78 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEIN 309 I E +R EV+ AD++LL+ ++ Sbjct: 79 RGGIFEPLVRERALREVDRADVLLLVLDVT 108 >gi|271501567|ref|YP_003334593.1| ribosome-associated GTPase EngA [Dickeya dadantii Ech586] gi|270345122|gb|ACZ77887.1| ribosome-associated GTPase EngA [Dickeya dadantii Ech586] Length = 498 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 37/98 (37%), Positives = 63/98 (64%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + +D +V D+PGTTRD + I ++ +G + DTAG+R+ Sbjct: 212 KLAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMERDGRDYVLIDTAGVRKR 271 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D VEK + +T +E+A+++LL+ I++++ IS Sbjct: 272 GKITDTVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 307 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 19/155 (12%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG I DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGNEFIIIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL---------------KEINSKKEISF--PKNIDFIF 324 D VE +++ L +E AD++L L + + S+++ +F +D I Sbjct: 65 DGVETRMAEQSLLAIEEADIVLFLVDARDGLMPADYAIAQHLRSREKDTFLVANKVDGID 124 Query: 325 IGTK-SDLYSTYTEEYDHLISSFTGEGLEELINKI 358 I T +D YS + + I++ G G+ L+ K+ Sbjct: 125 IDTGIADFYSLGLGDV-YPIAASHGRGVTSLLEKV 158 >gi|283769536|ref|ZP_06342432.1| ribosome-associated GTPase EngA [Bulleidia extructa W1219] gi|283103804|gb|EFC05190.1| ribosome-associated GTPase EngA [Bulleidia extructa W1219] Length = 437 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 36/90 (40%), Positives = 52/90 (57%), Gaps = 3/90 (3%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G K+ ++G N GKSSL NA+ ++ AIV++I GTTRD + EG I DTAGIR Sbjct: 174 GVKMAVIGEPNVGKSSLVNAILNEERAIVSNIQGTTRDAIDTPFTHEGKPYIIVDTAGIR 233 Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLL 305 + I +EK + R +E D++L + Sbjct: 234 KRGKIYESIEKYSVLRAMRAIERCDVVLFV 263 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 49/84 (58%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN L + ++IV DIPG TRD L + G ++ DT GI+ + Sbjct: 6 VAIVGRPNVGKSTIFNRLVGERMSIVEDIPGVTRDRLYGSAEWAGNSFRVIDTGGIQLAN 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + E + + +E AD+IL++ Sbjct: 66 QPFQTEIRAQVDIAMEEADVILMV 89 >gi|332291461|ref|YP_004430070.1| ribosome-associated GTPase EngA [Krokinobacter diaphorus 4H-3-7-5] gi|332169547|gb|AEE18802.1| ribosome-associated GTPase EngA [Krokinobacter diaphorus 4H-3-7-5] Length = 435 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 36/88 (40%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G NAGKSS NAL +D IVTDI GTTRD + + G+ + DTAGIR Sbjct: 177 RFAVVGRPNAGKSSFINALIGEDRYIVTDIAGTTRDAMDTKYNRFGFEFNLVDTAGIRRK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E + R+ +E+AD+ILL+ Sbjct: 237 AKVKEDLEFYSVMRSVRAIEHADVILLV 264 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 1/88 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 + I+G N GKS+ FN L ++ AIV + G TRD D G + DT G + + Sbjct: 5 VAIVGRPNVGKSTFFNRLVQRREAIVDAVSGVTRDRHYGKTDWNGREFTVIDTGGYVVGS 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308 DD+ E E K+ L ++ AD I+ + ++ Sbjct: 65 DDVFEAEIDKQVELAIDEADAIIFMVDV 92 >gi|315186467|gb|EFU20227.1| ribosome-associated GTPase EngA [Spirochaeta thermophila DSM 6578] Length = 450 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 35/87 (40%), Positives = 51/87 (58%), Gaps = 3/87 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET- 280 + ILG N GKS+L N L ++ A+V+D PGTTRD+L G +I DTAGIR Sbjct: 194 VAILGKPNTGKSTLLNTLLGEERALVSDAPGTTRDLLEGRFQYRGRWFRIVDTAGIRRRS 253 Query: 281 --DDIVEKEGIKRTFLEVENADLILLL 305 +D +E ++R+ +E A ++ LL Sbjct: 254 RIEDDLEFYSVRRSLKVIEEAHVVFLL 280 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RE 279 ++VI+G N GKS+LFN L + AI PG TRD + +L G V + DT GI E Sbjct: 19 RVVIVGRPNVGKSTLFNRLIGRRKAITHPRPGVTRDAVEETWELGGGRVLLVDTGGITSE 78 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEIN 309 I E +R EV+ AD++LL+ ++ Sbjct: 79 RGGIFEPLVRERALREVDRADVLLLVLDVT 108 >gi|163856334|ref|YP_001630632.1| GTP-binding protein EngA [Bordetella petrii DSM 12804] gi|229710727|sp|A9IK66|DER_BORPD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|163260062|emb|CAP42363.1| putative GTP-binding protein [Bordetella petrii] Length = 451 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 60/98 (61%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N L ++ I D+PGTTRD + ID + +G + DTAG+R Sbjct: 187 KLAIVGRPNVGKSTLINTLLGEERVIAFDLPGTTRDAIEIDFERDGRKYTLIDTAGLRRR 246 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + VEK + +T +E ++++LL+ ++++ E+S Sbjct: 247 GKVFEAVEKFSVIKTLQAIEASNVVLLM--LDAQTEVS 282 Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 9/89 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D G TRD + + + DT G Sbjct: 7 VALVGRPNVGKSTLFNRLTRSRAALVADYSGLTRDRHYGEGRVGDTPFIVIDTGGF---- 62 Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305 + V K GI ++T + AD+++ L Sbjct: 63 EPVAKTGILREMARQTRQAIAEADVVVFL 91 >gi|254428914|ref|ZP_05042621.1| GTPase, putative [Alcanivorax sp. DG881] gi|196195083|gb|EDX90042.1| GTPase, putative [Alcanivorax sp. DG881] Length = 469 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 34/84 (40%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L + A+V D PG TRD D L GYL + DT GI E D Sbjct: 5 IALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGDGQLGGYLYTVVDTGGIGEND 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 D ++ ++ V AD++L + Sbjct: 65 DGIDVPMTSQSLQAVGEADVVLFM 88 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 62/113 (54%), Gaps = 8/113 (7%) Query: 206 HISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE 265 H + K GE + ++ +LG N GKS+L N + ++ +V D GTTRD + + + Sbjct: 173 HRTSKKPGE---DSIRVAVLGRPNVGKSTLINRMLGEERVVVFDHAGTTRDSIEVPFERM 229 Query: 266 GYLVKISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 G + DTAG+R ++VEK + + +E A +++++ I++++ I+ Sbjct: 230 GRAYTLIDTAGVRRRGKVFEMVEKFSVIKALQAMEAAQVVVVV--IDAREGIT 280 >gi|17227979|ref|NP_484527.1| GTP-binding protein EngA [Nostoc sp. PCC 7120] gi|26006724|sp|Q8YZH7|DER_NOSS1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|17129828|dbj|BAB72441.1| GTP binding protein [Nostoc sp. PCC 7120] Length = 453 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/91 (41%), Positives = 53/91 (58%), Gaps = 3/91 (3%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 N KI I+G N GKSSL NA A ++ IV+ I GTTRD + ++ +G ++ DTAGI Sbjct: 175 NEIKIAIIGRPNVGKSSLLNAFAGEERVIVSPISGTTRDAIDTFIERDGQNYRLIDTAGI 234 Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLL 305 R+ I E I R F + AD++LL+ Sbjct: 235 RKKKSIDYGTEFFSINRAFKAIRRADVVLLV 265 Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 32/61 (52%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+L N LA + AIV D PG TRD + ++ DT G+ D Sbjct: 6 VAIIGRPNVGKSTLVNRLAGEQTAIVHDEPGVTRDRTYLPAYWSDREFQVVDTGGLVFND 65 Query: 282 D 282 D Sbjct: 66 D 66 >gi|262274783|ref|ZP_06052594.1| GTP-binding protein EngA [Grimontia hollisae CIP 101886] gi|262221346|gb|EEY72660.1| GTP-binding protein EngA [Grimontia hollisae CIP 101886] Length = 501 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 52/182 (28%), Positives = 87/182 (47%), Gaps = 31/182 (17%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 K I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G I DTAG+R Sbjct: 212 KFSIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVIIDTAGVRRR 271 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS--------FPKNIDFIFI---- 325 +D VEK + +T +E+A+++LL+ I++++ IS F N + Sbjct: 272 KRVNDKVEKFSVVQTLKAIEDANVVLLV--IDARENISDQDLSLLGFALNAGRSIVIAVN 329 Query: 326 ---GTKSDLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPF 371 G SD+ E D H IS+ G G+ L I+ + +++ Sbjct: 330 KWDGLDSDVKERVKSELDRRLGFVDFARIHFISALHGTGVGHLFESIQEAYESATRRIST 389 Query: 372 SI 373 S+ Sbjct: 390 SM 391 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD L + + DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGKALLGEHEFIVVDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE + +++ +E AD++L + Sbjct: 65 EGVETKMAEQSLAAIEEADVVLFM 88 >gi|224531730|ref|ZP_03672362.1| ribosome-associated GTPase EngA [Borrelia valaisiana VS116] gi|224511195|gb|EEF81601.1| ribosome-associated GTPase EngA [Borrelia valaisiana VS116] Length = 433 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 37/98 (37%), Positives = 60/98 (61%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 K+ I+G N+GKS+L N L+ +++IV+D PGTTRD + G + +I DTAGIR Sbjct: 175 KVGIIGKPNSGKSTLINYLSGNEISIVSDQPGTTRDFIKTKFTSNGKVFEIIDTAGIRRR 234 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 ++IVE + R ++ D++ LL I+ K+E++ Sbjct: 235 ARVNEIVEYYSVNRALKVIDMVDIVFLL--IDVKEELT 270 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 47/89 (52%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K++I+G N GKS+LFN + +I G TRD++ + + K+ DT G Sbjct: 6 KVLIVGRPNVGKSALFNRILDTKRSITESTYGVTRDLVEEVCKVGSFSFKLIDTGGFTIL 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN 309 D + K +++ +E +LILL+ ++N Sbjct: 66 RDEISKIVVQKVLSSLEKVNLILLVLDVN 94 >gi|91217172|ref|ZP_01254134.1| GTP-binding protein EngA [Psychroflexus torquis ATCC 700755] gi|91184772|gb|EAS71153.1| GTP-binding protein EngA [Psychroflexus torquis ATCC 700755] Length = 442 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 36/85 (42%), Positives = 51/85 (60%), Gaps = 3/85 (3%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 ++G NAGKSS NAL +D IVTDIPGTTRD + G+ K+ DTAGIR + Sbjct: 187 VVGRPNAGKSSFINALIGEDRYIVTDIPGTTRDSIDTRYTRFGFDFKLVDTAGIRRKAKV 246 Query: 284 ---VEKEGIKRTFLEVENADLILLL 305 +E + R+ +EN+D+ L++ Sbjct: 247 KEDLEFYSVMRSVRAIENSDVCLIV 271 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 1/88 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 + ++G N GKS+LFN + K+ AIV G TRD D G + DT G + + Sbjct: 13 VAVVGRPNVGKSTLFNRMIKRREAIVDSASGVTRDRHYGKSDWNGREFTLIDTGGYVIGS 72 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308 DD+ EKE K+ L ++ AD+I+ + ++ Sbjct: 73 DDVFEKEIDKQVELAIDEADVIIFVVDV 100 >gi|90410877|ref|ZP_01218891.1| GTP-binding protein EngA [Photobacterium profundum 3TCK] gi|90328090|gb|EAS44401.1| GTP-binding protein EngA [Photobacterium profundum 3TCK] Length = 493 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 70/119 (58%), Gaps = 5/119 (4%) Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259 K D++ ++ + K+ I+G N GKS+L N + ++ +V D+PGTTRD + Sbjct: 185 KADLTEEDAEAAYKRLQEQPIKLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIY 244 Query: 260 IDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 I ++ +G + DTAG+R ++ VEK + +T VE+A+++LL+ I++++ IS Sbjct: 245 IPMERDGQEYVLIDTAGVRRRKNMNQAVEKFSVIQTLKAVEDANVVLLI--IDARENIS 301 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 49/84 (58%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD +LE + + DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAELEEHEFIVIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE + +++ +E AD++L L Sbjct: 65 EGVETKMAEQSLAAIEEADVVLFL 88 >gi|82703488|ref|YP_413054.1| GTP-binding protein EngA [Nitrosospira multiformis ATCC 25196] gi|123768150|sp|Q2Y6F9|DER_NITMU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|82411553|gb|ABB75662.1| Small GTP-binding protein domain [Nitrosospira multiformis ATCC 25196] Length = 466 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 37/98 (37%), Positives = 59/98 (60%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 KI I+G N GKS+L N L ++ I D PGTTRD + ID + G + DTAG+R Sbjct: 177 KIAIVGRPNVGKSTLVNTLLGEERVIAFDQPGTTRDSIYIDFERNGRTYTLIDTAGLRRR 236 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + + VEK + +T +E+A++++L+ +++ EIS Sbjct: 237 GKVQETVEKFSVVKTLQAIEDANVVILV--LDAASEIS 272 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 3/86 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-- 279 +V++G SN GKS+LFN L + A+V D+PG TRD L + DT G Sbjct: 5 LVLVGRSNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGHGKLGDRPYLVVDTGGFEPMA 64 Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305 T+ I+ E K+T ++ AD++L + Sbjct: 65 TEGILH-EMAKQTLQAIDEADVVLFI 89 >gi|315924473|ref|ZP_07920695.1| ribosome-associated GTPase EngA [Pseudoramibacter alactolyticus ATCC 23263] gi|315622352|gb|EFV02311.1| ribosome-associated GTPase EngA [Pseudoramibacter alactolyticus ATCC 23263] Length = 440 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 53/177 (29%), Positives = 86/177 (48%), Gaps = 29/177 (16%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G NAGKS+L N L ++ IV+DIPGTTRD + ++ G DTAG+R Sbjct: 179 IAVVGKPNAGKSTLVNQLIGENRMIVSDIPGTTRDAIDSKIERGGVEYTFIDTAGLRRKS 238 Query: 282 DI---VEKEGIKRTFLEVENADLILLL-------KEINSK-KEISFPKNIDFIFIGTKSD 330 I VE+ I R V+ AD++L++ E +SK I+ + I I + K D Sbjct: 239 KIADEVERYSIIRAIAAVDRADVVLMMVNAQTGVTEQDSKIAGIAHNRFIPTIIVVNKWD 298 Query: 331 LYSTYTEEYDHL------------------ISSFTGEGLEELINKIKSILSNKFKKL 369 L T+ + IS+ TG+ E++ +KI+ +++ K++ Sbjct: 299 LIEKDTKTMQKMTGDIRNSLAFMPYAPMLFISAKTGKRAEKIYDKIQYVVTQSRKRV 355 Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 50/85 (58%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + ++G N GKS+LFN L + +AIV + PG TRD + D + + + + DT GI +T Sbjct: 5 VAVVGKPNVGKSTLFNKLVGERIAIVENTPGVTRDRIIADAEWQNHRFTLIDTGGIELKT 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 + + + + + +E ADLILLL Sbjct: 65 GNTIMHQMRVQAEIAIETADLILLL 89 >gi|110834717|ref|YP_693576.1| GTP-binding protein [Alcanivorax borkumensis SK2] gi|123149362|sp|Q0VNE4|DER_ALCBS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|110647828|emb|CAL17304.1| GTP-binding protein, putative [Alcanivorax borkumensis SK2] Length = 471 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 34/84 (40%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L + A+V D PG TRD D L GYL + DT GI E D Sbjct: 7 IALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGDGQLGGYLYTVVDTGGIGEND 66 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 D ++ ++ V AD++L + Sbjct: 67 DGIDVPMTSQSLQAVGEADVVLFM 90 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 62/113 (54%), Gaps = 8/113 (7%) Query: 206 HISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE 265 H + K GE + ++ +LG N GKS+L N + ++ +V D GTTRD + + + Sbjct: 175 HRTSKKPGE---DSIRVAVLGRPNVGKSTLINRMLGEERVVVFDHAGTTRDSIEVPFERM 231 Query: 266 GYLVKISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 G + DTAG+R ++VEK + + +E A +++++ I++++ I+ Sbjct: 232 GRAYTLIDTAGVRRRGKVFEMVEKFSVIKALQAMEAAQVVVVV--IDAREGIT 282 >gi|315634680|ref|ZP_07889964.1| ribosome-associated GTPase EngA [Aggregatibacter segnis ATCC 33393] gi|315476628|gb|EFU67376.1| ribosome-associated GTPase EngA [Aggregatibacter segnis ATCC 33393] Length = 512 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 36/98 (36%), Positives = 62/98 (63%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI I+G N GKS+L N + +D +V D+PGTTRD + I ++ +G + DTAG+R+ Sbjct: 225 KIAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMERDGQNYTLIDTAGVRKR 284 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + VEK + +T +++A+++LL I++++ IS Sbjct: 285 GKVHLAVEKFSVIKTLQAIQDANVVLLT--IDARENIS 320 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 33/84 (39%), Positives = 50/84 (59%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD L GY + DT GI T+ Sbjct: 6 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAHLAGYDFIVIDTGGIDGTE 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE++ +++ L +E AD++L L Sbjct: 66 EGVEEKMAEQSLLAIEEADIVLFL 89 >gi|323452265|gb|EGB08139.1| hypothetical protein AURANDRAFT_64089 [Aureococcus anophagefferens] Length = 552 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 9/85 (10%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE- 279 ++ ++G N GKS+L NALA+ +VA+ PG TRD + +D+ G V++ DTAG+R Sbjct: 231 RVALVGRPNVGKSTLVNALARSNVAVAAPEPGVTRDAVECAVDVAGRAVRLVDTAGVRRV 290 Query: 280 --------TDDIVEKEGIKRTFLEV 296 + D VE+ + T LEV Sbjct: 291 LEGTTSRASKDAVEERAARSTELEV 315 >gi|223985795|ref|ZP_03635838.1| hypothetical protein HOLDEFILI_03144 [Holdemania filiformis DSM 12042] gi|223962243|gb|EEF66712.1| hypothetical protein HOLDEFILI_03144 [Holdemania filiformis DSM 12042] Length = 434 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 35/90 (38%), Positives = 52/90 (57%), Gaps = 3/90 (3%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G + I+G N GKSSL NAL K++ IV+DI GTTRD + + +G + DTAGIR Sbjct: 173 GIRFAIIGRPNVGKSSLVNALLKEERVIVSDIEGTTRDAVDTPFEHDGKQYVVVDTAGIR 232 Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLL 305 + + +EK + R +E D++L + Sbjct: 233 KRGKVYENIEKYSVLRAMSAIERCDVVLFV 262 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN + + V+IV D PG TRD + ++ DT GI+ + Sbjct: 6 VAIVGRPNVGKSTIFNRILGERVSIVEDTPGVTRDRIYGKGTWLTQDFRLIDTGGIQLEN 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++E + + +E AD+IL + Sbjct: 66 QPFQEEIKAQVEIAIEEADVILFV 89 >gi|159028658|emb|CAO88129.1| engA [Microcystis aeruginosa PCC 7806] Length = 452 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 35/91 (38%), Positives = 54/91 (59%), Gaps = 3/91 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKSSL NAL + AIV+ I GTTRD + ++ EG + ++ DTAGIR Sbjct: 178 KVAIIGRPNVGKSSLLNALTGQQRAIVSPISGTTRDSIDTLIEREGQVYRLIDTAGIRRK 237 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEI 308 ++ E I R F + +D++L + ++ Sbjct: 238 KNVDYGAEFFSINRAFKAIRRSDVVLFVIDV 268 Score = 40.8 bits (94), Expect = 0.48, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 32/66 (48%), Gaps = 10/66 (15%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-----VLTIDLDLEGYLVKISDTAG 276 + I+G N GKS+L N +A AIV D PG TRD D D + I DT G Sbjct: 6 VAIIGRPNVGKSTLVNRIAGDQQAIVFDQPGITRDRTYQPAFWCDRDFQ-----IVDTGG 60 Query: 277 IRETDD 282 + DD Sbjct: 61 LVFNDD 66 >gi|296113385|ref|YP_003627323.1| GTP-binding protein EngA [Moraxella catarrhalis RH4] gi|295921079|gb|ADG61430.1| GTP-binding protein EngA [Moraxella catarrhalis RH4] gi|326559230|gb|EGE09661.1| GTP-binding protein EngA [Moraxella catarrhalis 46P47B1] gi|326559869|gb|EGE10269.1| GTP-binding protein EngA [Moraxella catarrhalis 7169] gi|326569645|gb|EGE19697.1| GTP-binding protein EngA [Moraxella catarrhalis BC1] gi|326570126|gb|EGE20171.1| GTP-binding protein EngA [Moraxella catarrhalis BC8] gi|326570864|gb|EGE20888.1| GTP-binding protein EngA [Moraxella catarrhalis BC7] gi|326574414|gb|EGE24356.1| GTP-binding protein EngA [Moraxella catarrhalis 101P30B1] gi|326576405|gb|EGE26314.1| GTP-binding protein EngA [Moraxella catarrhalis O35E] Length = 472 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 37/97 (38%), Positives = 61/97 (62%), Gaps = 5/97 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N L +D +V D+PGTTRD + I + EG + DTAG+R Sbjct: 181 KLAIIGRPNVGKSTLVNRLLGEDRVVVFDMPGTTRDSIYIPFEREGRSYVLIDTAGVRRR 240 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314 D+ VEK + +T +++A++++L+ I++K+ I Sbjct: 241 GRIDEKVEKFSVVKTLQAIKDANVVVLV--IDAKEGI 275 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 3/87 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L K A+V D+ G TRD D E + DT GI E D Sbjct: 7 VALIGRPNVGKSTLFNQLTKSRQALVADLAGLTRDRQYGDAHFENKSFIVVDTGGIGEMD 66 Query: 282 D---IVEKEGIKRTFLEVENADLILLL 305 D ++ +++ + AD+++ + Sbjct: 67 DGSGNIDDYMATQSYTAIHEADIVVFV 93 >gi|302389542|ref|YP_003825363.1| ribosome-associated GTPase EngA [Thermosediminibacter oceani DSM 16646] gi|302200170|gb|ADL07740.1| ribosome-associated GTPase EngA [Thermosediminibacter oceani DSM 16646] Length = 436 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 39/100 (39%), Positives = 61/100 (61%), Gaps = 9/100 (9%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ ++G N GKSSL NA+ ++ IV+DIPGTTRD + + EG + + DTAG+R Sbjct: 177 KVAVVGKPNVGKSSLVNAILGEERVIVSDIPGTTRDAIDTPFEYEGQKMVLIDTAGMRRK 236 Query: 281 DDIVEKEGIK-----RTFLEVENADLILLLKEINSKKEIS 315 + KE I+ R VE AD++L++ +++ +EIS Sbjct: 237 SRV--KEDIEFYSNIRALGAVERADIVLVV--LDATQEIS 272 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 1/87 (1%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-R 278 + + I+G N GKS+LFN + K ++IV D PG TRD + ++ G + DT GI Sbjct: 3 FTVAIVGRPNVGKSTLFNRIIGKRISIVDDKPGVTRDRIYGQVEWRGKKFTLVDTGGIDP 62 Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL 305 E D++ ++ ++++DLIL L Sbjct: 63 EGSDVMTSHIRRQVEFAIDSSDLILFL 89 >gi|269926863|ref|YP_003323486.1| small GTP-binding protein [Thermobaculum terrenum ATCC BAA-798] gi|269790523|gb|ACZ42664.1| small GTP-binding protein [Thermobaculum terrenum ATCC BAA-798] Length = 448 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 53/88 (60%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I I+G N GKS L NA+ ++ AIV+D+PGTTRD + ++ + + DTAGIR Sbjct: 187 RIAIVGRPNVGKSRLLNAILGQERAIVSDVPGTTRDPVDTEIQWGDQRIVLIDTAGIRRR 246 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E+ + RT + +D++LLL Sbjct: 247 GKVESGIEQYSVFRTLRAIGRSDVVLLL 274 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/96 (35%), Positives = 50/96 (52%), Gaps = 7/96 (7%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+ FN L + AIV D PGTTRD L ++ G I DT G+ + Sbjct: 7 VAIVGRPNVGKSTFFNRLLGERAAIVQDEPGTTRDRLYGEVSWRGRTFTIVDTGGLETSV 66 Query: 282 DIV--EKEGIKRTFLE-----VENADLILLLKEINS 310 D E + I+R E + ADLI+ + ++ + Sbjct: 67 DSSSDEPDPIRRMVREQAEQAIREADLIVFMIDVKT 102 >gi|89072706|ref|ZP_01159271.1| GTP-binding protein EngA [Photobacterium sp. SKA34] gi|89051526|gb|EAR56980.1| GTP-binding protein EngA [Photobacterium sp. SKA34] Length = 500 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 37/98 (37%), Positives = 63/98 (64%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G + DTAGIR Sbjct: 213 KLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGQEYVLIDTAGIRRR 272 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 ++ VEK + +T VE+A+++LL+ I++++ IS Sbjct: 273 KNMHQAVEKFSVIQTLKAVEDANVVLLI--IDARENIS 308 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 49/84 (58%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD +LE + + DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAELEEHEFIVIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE + +++ +E AD++L L Sbjct: 65 EGVETKMAEQSLAAIEEADVVLFL 88 >gi|166362822|ref|YP_001655095.1| GTP-binding protein EngA [Microcystis aeruginosa NIES-843] gi|189037151|sp|B0JFL6|DER_MICAN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|166085195|dbj|BAF99902.1| GTP binding protein [Microcystis aeruginosa NIES-843] Length = 452 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 35/91 (38%), Positives = 54/91 (59%), Gaps = 3/91 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKSSL NAL + AIV+ I GTTRD + ++ EG + ++ DTAGIR Sbjct: 178 KVAIIGRPNVGKSSLLNALTGQQRAIVSPISGTTRDSIDTLIEREGQVYRLIDTAGIRRK 237 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEI 308 ++ E I R F + +D++L + ++ Sbjct: 238 KNVDYGAEFFSINRAFKAIRRSDVVLFVIDV 268 Score = 40.8 bits (94), Expect = 0.47, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 32/66 (48%), Gaps = 10/66 (15%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-----VLTIDLDLEGYLVKISDTAG 276 + I+G N GKS+L N +A AIV D PG TRD D D + I DT G Sbjct: 6 VAIIGRPNVGKSTLVNRIAGDQQAIVFDQPGITRDRTYQPAFWCDRDFQ-----IVDTGG 60 Query: 277 IRETDD 282 + DD Sbjct: 61 LVFNDD 66 >gi|291618407|ref|YP_003521149.1| EngA [Pantoea ananatis LMG 20103] gi|291153437|gb|ADD78021.1| EngA [Pantoea ananatis LMG 20103] gi|327394799|dbj|BAK12221.1| GTP-binding protein EngA [Pantoea ananatis AJ13355] Length = 494 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 36/98 (36%), Positives = 62/98 (63%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + +D +V D+PGTTRD + I ++ +G + DTAG+R+ Sbjct: 207 KLAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 266 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D VEK + +T +E+A++++L+ I+++ IS Sbjct: 267 GKITDTVEKFSVIKTLQAIEDANVVMLV--IDARAGIS 302 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 49/84 (58%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG + DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFIVIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 D VE +++ L +E AD++L + Sbjct: 65 DGVETRMAEQSLLAIEEADVVLFM 88 >gi|295132650|ref|YP_003583326.1| GTP-binding protein EngA [Zunongwangia profunda SM-A87] gi|294980665|gb|ADF51130.1| GTP-binding protein EngA [Zunongwangia profunda SM-A87] Length = 434 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 36/88 (40%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G NAGKSS NAL +D IVTDI GTTRD + + G+ + DTAGIR Sbjct: 176 RFAVVGRPNAGKSSFINALIGEDRYIVTDIAGTTRDSIDTKYNRFGFEFNLVDTAGIRRK 235 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E + R+ +ENAD+ LL+ Sbjct: 236 SKVKEDLEFYSVMRSVRAIENADVCLLV 263 Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 1/90 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 + I+G N GKS+ FN L ++ AIV + G TRD D G + DT G + + Sbjct: 5 VAIVGRPNVGKSTFFNRLIQRREAIVDSVSGVTRDRHYGKSDWNGRNFSLIDTGGYVIGS 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310 DD+ E E K+ L + AD I+ + ++ S Sbjct: 65 DDVFEAEIDKQVELAIGEADAIIFMVDVES 94 >gi|325915367|ref|ZP_08177684.1| small GTP-binding protein domain/GTP-binding hypothetical protein [Xanthomonas vesicatoria ATCC 35937] gi|325538414|gb|EGD10093.1| small GTP-binding protein domain/GTP-binding hypothetical protein [Xanthomonas vesicatoria ATCC 35937] Length = 465 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 41/162 (25%), Positives = 83/162 (51%), Gaps = 17/162 (10%) Query: 161 WIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLK-----------NDISSHISQ 209 W+ KL + +D ++EE V++ ++ +D++ L ++ + + + Sbjct: 106 WLRKLARPTVLVINKIDGTDEETVRSEFARYGFSDVVALSAAHRQGIDELLEEVGARLPE 165 Query: 210 GKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266 GE++ N +I +G N GKS+L N L ++ I +++PGTTRD + +DL+ + Sbjct: 166 EGSGELLDNDPARVRIAFVGRPNVGKSTLVNRLLGEERMIASEVPGTTRDSIAVDLERDN 225 Query: 267 YLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLL 305 ++ DTAG+R + ++ VEK +T +E + +L+ Sbjct: 226 RQYRLIDTAGLRRRGKVEEAVEKFSAFKTLQAIEQCQVAVLM 267 Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust. Identities = 17/35 (48%), Positives = 24/35 (68%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 + ++G N GKS++FNAL + A+V D PG TRD Sbjct: 5 VALVGRPNVGKSTIFNALTRTRDALVHDQPGVTRD 39 >gi|257125220|ref|YP_003163334.1| GTP-binding protein EngA [Leptotrichia buccalis C-1013-b] gi|257049159|gb|ACV38343.1| small GTP-binding protein [Leptotrichia buccalis C-1013-b] Length = 441 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 39/93 (41%), Positives = 54/93 (58%), Gaps = 3/93 (3%) Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 I +G I ILG NAGKSSL N L ++ +IV+DI GTTRD + L G + DTA Sbjct: 172 IEDGLNIAILGRPNAGKSSLVNKLLNEERSIVSDIAGTTRDSIDSSLRYNGETYTLIDTA 231 Query: 276 GIR---ETDDIVEKEGIKRTFLEVENADLILLL 305 GIR + +D +E I R ++ AD+ +L+ Sbjct: 232 GIRRKSKVEDDIEYYSILRAMKAIKRADVCVLM 264 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 50/87 (57%), Gaps = 1/87 (1%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR- 278 + + I+G N GKS+LFN L ++IV D PG TRD L +++ G + DT G+ Sbjct: 3 HTVAIVGRPNVGKSTLFNKLVGDRLSIVKDEPGVTRDRLYREIEWSGKEFILVDTGGLEP 62 Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL 305 T+D + + ++ + ++ AD+I+ L Sbjct: 63 RTEDFMMGKIKQQAQVAIDEADVIIFL 89 >gi|296126458|ref|YP_003633710.1| ribosome-associated GTPase EngA [Brachyspira murdochii DSM 12563] gi|296018274|gb|ADG71511.1| ribosome-associated GTPase EngA [Brachyspira murdochii DSM 12563] Length = 484 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 35/90 (38%), Positives = 56/90 (62%), Gaps = 3/90 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G NAGKS+L N L KD +IV+DI GTTRD + + +G + + DTAGIR+ Sbjct: 223 IAIVGKPNAGKSTLLNTLIGKDRSIVSDIAGTTRDAIDETFNFKGDDICLVDTAGIRKKK 282 Query: 282 DI---VEKEGIKRTFLEVENADLILLLKEI 308 ++ VE + R +E++D+ +L+ ++ Sbjct: 283 NVNTDVEYYSVNRAIKAIESSDVCILMLDV 312 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 40/142 (28%), Positives = 68/142 (47%), Gaps = 12/142 (8%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKS+LFN A + +IV G TRD+ ++ + DT G+ + Sbjct: 4 IAILGRPNVGKSTLFNRFAGRRKSIVDPTAGVTRDISMSLAYIDDIAFNVFDTGGLLDIS 63 Query: 282 DIVEKEGIKRTFLEV--ENADLILLLKEINSKKEISFPKNIDFIFIGTKSD------LYS 333 D E ++ L+ E+AD++L L + + S P + FI I KS + Sbjct: 64 DDTLNEKVREKALKTAAEDADILLFLVDAHQ----SHPDDRHFINIIRKSGKPIILVINK 119 Query: 334 TYTEEYDHLISSFTGEGLEELI 355 + +++LI+ F G+ +++ Sbjct: 120 VDADSHNNLINEFYSLGINDVV 141 >gi|302878616|ref|YP_003847180.1| ribosome-associated GTPase EngA [Gallionella capsiferriformans ES-2] gi|302581405|gb|ADL55416.1| ribosome-associated GTPase EngA [Gallionella capsiferriformans ES-2] Length = 470 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 34/98 (34%), Positives = 62/98 (63%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 K+ I+G N GKS+L NA+ + I D PGTTRD + ID + +G I DTAG+R Sbjct: 180 KLAIVGRPNVGKSTLVNAILGEQRVIAFDQPGTTRDSIYIDFERDGKQYTIIDTAGVRRR 239 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + ++ +EK + +T +E+A++++L+ ++++ +I+ Sbjct: 240 GKVEEAIEKFSVIKTMQAIEDANVVVLV--VDARDQIT 275 Score = 43.9 bits (102), Expect = 0.053, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 9/89 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 +V++G N GKS+LFN L + A+V D PG TRD + + DT G+ Sbjct: 5 LVLVGRPNVGKSTLFNRLTRSRDALVADQPGLTRDRHYGRGRVGERPYLVVDTGGL---- 60 Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305 + V K+GI +++ V+ AD++L L Sbjct: 61 EPVAKDGIMFEMARQSRQAVDEADVVLFL 89 >gi|71279565|ref|YP_270897.1| GTP-binding protein EngA [Colwellia psychrerythraea 34H] gi|123733686|sp|Q47WC5|DER_COLP3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|71145305|gb|AAZ25778.1| GTP-binding protein EngA [Colwellia psychrerythraea 34H] Length = 498 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 37/98 (37%), Positives = 61/98 (62%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE- 279 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ G + DTAGIR Sbjct: 214 KLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSVYIPMERNGREYTLIDTAGIRRR 273 Query: 280 --TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D+VEK + +T +E+A++ LL+ I++++ IS Sbjct: 274 KNVTDVVEKYSVIKTLRAIEDANVCLLI--IDAQEGIS 309 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 40/153 (26%), Positives = 71/153 (46%), Gaps = 18/153 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++E + + DT GI + Sbjct: 5 VALVGRPNVGKSTLFNRLTRSRDALVADYPGLTRDRQYGQAEVEEHPFIVIDTGGINGDE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI-----------------NSKKEISFPKNIDFIF 324 ++ + +++ + +E AD +L L + +KK ID I Sbjct: 65 QGIDVKMAEQSLMAIEEADAVLFLVDARDGLTAADHGIADHLRKQNKKIFVVANKIDGIH 124 Query: 325 IGTK-SDLYSTYTEEYDHLISSFTGEGLEELIN 356 + ++ YS E+ H I++ G G+ +L+ Sbjct: 125 GDSAVAEFYSLGLGEHVHQIAAAHGRGVTQLLT 157 >gi|188997363|ref|YP_001931614.1| small GTP-binding protein [Sulfurihydrogenibium sp. YO3AOP1] gi|229807528|sp|B2V5W6|DER_SULSY RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|188932430|gb|ACD67060.1| small GTP-binding protein [Sulfurihydrogenibium sp. YO3AOP1] Length = 445 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 37/97 (38%), Positives = 59/97 (60%), Gaps = 3/97 (3%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R+ K+ I+G NAGKSSL NAL ++ +V++IPGTTRD + I + +G DTAG Sbjct: 179 RDYIKVAIVGKPNAGKSSLINALLNEERVLVSEIPGTTRDTVDILYEKDGQKFLFLDTAG 238 Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLLKEINS 310 +R+ + +E + RT +E AD+++L+ + N Sbjct: 239 MRKKSKVDFGLEFFSVGRTIEAIEKADVVVLVIDANQ 275 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 34/57 (59%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 +++ I+G N GKSSLFN + + AIV DIPG TRD + + G ++ DT G Sbjct: 2 FRVAIVGIPNVGKSSLFNRIIGQRKAIVEDIPGVTRDRIVSTAEWRGVKFEVVDTGG 58 >gi|303252646|ref|ZP_07338809.1| GTP-binding protein EngA [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247405|ref|ZP_07529452.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302648614|gb|EFL78807.1| GTP-binding protein EngA [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306856102|gb|EFM88258.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 506 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 51/183 (27%), Positives = 87/183 (47%), Gaps = 33/183 (18%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G I DTAG+R+ Sbjct: 219 KIAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGQQYTIIDTAGVRKR 278 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNIDFI----------- 323 + VEK + +T +++A+++LL +E S +++S + FI Sbjct: 279 GKVNLAVEKFSVIKTLQAIQDANVVLLTIDAREGISDQDLSL---LGFILNAGRSLVIVV 335 Query: 324 --FIGTKSDLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLP 370 + G D+ E D H IS+ G G+ L + +K + +K Sbjct: 336 NKWDGLSQDIKDQVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSVKEAYACATQKTS 395 Query: 371 FSI 373 S+ Sbjct: 396 TSV 398 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 51/84 (60%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++ GY + DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANIAGYDFIVIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE++ +++ L +E AD++L L Sbjct: 65 EGVEEKMAEQSLLAIEEADVVLFL 88 >gi|260881015|ref|ZP_05403389.2| ribosome-associated GTPase EngA [Mitsuokella multacida DSM 20544] gi|260850181|gb|EEX70188.1| ribosome-associated GTPase EngA [Mitsuokella multacida DSM 20544] Length = 445 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 54/87 (62%), Gaps = 3/87 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--- 278 I ++G N GKSS+ NA+ ++ IV+D+PGTTRD + +G + DTAG+R Sbjct: 181 IAVIGRPNVGKSSIVNAILGEERVIVSDVPGTTRDAIDTHFTKDGTKFTLIDTAGMRRRG 240 Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL 305 + D+ VE+ + R+ ++ AD++L++ Sbjct: 241 KIDEPVERYSVMRSLRAIDRADVVLMM 267 Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/86 (39%), Positives = 52/86 (60%), Gaps = 3/86 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--E 279 + I+G N GKS+LFN + KK V+IV D+PG TRD + +D + + DT GI E Sbjct: 8 VAIVGRPNVGKSTLFNQIGKKRVSIVDDMPGVTRDRIYLDAEWLNQHFTMIDTGGIEFDE 67 Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305 ++ I+ K ++ L ++ AD+IL L Sbjct: 68 SNHIL-KSMRQQAQLAMDEADVILFL 92 >gi|308187766|ref|YP_003931897.1| GTP-binding protein engA [Pantoea vagans C9-1] gi|308058276|gb|ADO10448.1| GTP-binding protein engA [Pantoea vagans C9-1] Length = 496 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 56/88 (63%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + +D +V D+PGTTRD + I ++ +G + DTAG+R+ Sbjct: 209 KLAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 268 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLL 305 D VEK + +T +E+A++++L+ Sbjct: 269 AKISDTVEKFSVIKTLQAIEDANVVMLV 296 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 49/84 (58%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG + DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFIVIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE +++ L +E AD++L + Sbjct: 65 EGVETRMAEQSLLAIEEADVVLFM 88 >gi|51598763|ref|YP_072951.1| GTP-binding protein EngA [Borrelia garinii PBi] gi|81825627|sp|Q661B2|DER_BORGA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|51573334|gb|AAU07359.1| GTP-binding protein [Borrelia garinii PBi] Length = 433 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 34/91 (37%), Positives = 56/91 (61%), Gaps = 3/91 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 K+ I+G N+GKS+L N L+ +++IV+D PGTTRD + L G + +I DTAGIR Sbjct: 175 KVGIIGKPNSGKSTLINYLSGNEISIVSDQPGTTRDFIKTKLTRNGKVFEIIDTAGIRRR 234 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEI 308 +++VE + R ++ D++ LL ++ Sbjct: 235 ARVNEVVEYYSVNRALKVIDIVDIVFLLIDV 265 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 47/89 (52%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K++I+G N GKS+LFN + +I G TRD++ + + K+ DT G Sbjct: 6 KVLIVGRPNVGKSALFNRILDAKRSITESTYGVTRDLVEEVCKVGSFNFKLIDTGGFTIL 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN 309 D + K +++ +E DLILL+ ++N Sbjct: 66 KDEISKIVVQKVLSSLEKVDLILLVLDVN 94 >gi|224534791|ref|ZP_03675363.1| ribosome-associated GTPase EngA [Borrelia spielmanii A14S] gi|224514039|gb|EEF84361.1| ribosome-associated GTPase EngA [Borrelia spielmanii A14S] Length = 433 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 36/98 (36%), Positives = 61/98 (62%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 K+ I+G N+GKS+L N L+ +++I++D PGTTRD + + G + +I DTAGIR Sbjct: 175 KVGIIGKPNSGKSTLINHLSGNEISIISDQPGTTRDFIKTKVTRNGKVFEIIDTAGIRRR 234 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 ++IVE + R ++ D++ LL I+ K+E++ Sbjct: 235 ARVNEIVEYYSVNRALKVIDMVDIVFLL--IDVKEELT 270 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 48/89 (53%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K++I+G N GKS+LFN L +I G TRD++ ++ + K+ DT G Sbjct: 6 KVLIVGRPNVGKSALFNRLLDTKRSITESTYGVTRDLVEEVCKVDSFKFKLIDTGGFTIL 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN 309 D + K +++ +E DLILL+ ++N Sbjct: 66 KDEISKIVVQKVLSSLEKVDLILLVLDVN 94 >gi|121535817|ref|ZP_01667617.1| small GTP-binding protein [Thermosinus carboxydivorans Nor1] gi|121305589|gb|EAX46531.1| small GTP-binding protein [Thermosinus carboxydivorans Nor1] Length = 440 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 36/88 (40%), Positives = 53/88 (60%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ +G N GKSSL NAL ++ IV+DIPGTTRD + + +G + DTAG+R Sbjct: 178 KVAFIGRPNVGKSSLVNALLGEERVIVSDIPGTTRDAIDTYFEKDGTKFILIDTAGMRRK 237 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 I VE+ + R+ VE AD++L++ Sbjct: 238 ARINQPVERYSVIRSLRAVERADVVLVV 265 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/85 (41%), Positives = 51/85 (60%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFN +AKK V+IV D+PG TRD + +D + G + DT GI ET Sbjct: 6 VAIVGRPNVGKSTLFNFIAKKRVSIVEDLPGVTRDRIYMDAEWLGREFTMIDTGGIEIET 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 D + + L +E AD+I+ + Sbjct: 66 TDRILAATRHQAQLAIEEADVIIFV 90 >gi|315637972|ref|ZP_07893157.1| ribosome-associated GTPase EngA [Campylobacter upsaliensis JV21] gi|315481820|gb|EFU72439.1| ribosome-associated GTPase EngA [Campylobacter upsaliensis JV21] Length = 459 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 52/158 (32%), Positives = 79/158 (50%), Gaps = 20/158 (12%) Query: 154 LSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLG 213 L LY W++K H + + S EE ++NF ++ Q K Sbjct: 149 LDELYA-WLEKFLHTSILKNDEEEQSLEEFLENFDEEK-----------------QIKFK 190 Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273 EI N KI I+G N GKSSL NAL K+ ++V+ I GTT D + + + L++ D Sbjct: 191 EIDENHIKIGIVGRVNVGKSSLLNALVKEQRSVVSSIAGTTIDPVNESVMYKDKLLEFID 250 Query: 274 TAGIRETDDI--VEKEGIKRTFLEVENADLILLLKEIN 309 TAGIR+ I +E+ + RT +EN+ + LL+ + N Sbjct: 251 TAGIRKRGKIQGLERFALNRTEKMLENSQIALLVLDAN 288 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 32/85 (37%), Positives = 56/85 (65%), Gaps = 3/85 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I+++G N GKSSLFN +A++ +AI ++I GTTRD I +++ G + D+ G+ E++ Sbjct: 4 IILIGKPNVGKSSLFNRIARQRIAITSEISGTTRDTNKIKVNINGKEALLIDSGGLDESN 63 Query: 282 DIVEKEGIKRTFLE-VENADLILLL 305 ++ + +K+ L +NAD+IL L Sbjct: 64 ELF--KNVKQNSLNAAKNADIILYL 86 >gi|154483558|ref|ZP_02026006.1| hypothetical protein EUBVEN_01262 [Eubacterium ventriosum ATCC 27560] gi|149735468|gb|EDM51354.1| hypothetical protein EUBVEN_01262 [Eubacterium ventriosum ATCC 27560] Length = 441 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 56/88 (63%), Gaps = 1/88 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFNALA K ++IV D PG TRD + D+D + + DT GI ++ Sbjct: 6 VAIVGRPNVGKSTLFNALAGKKISIVKDTPGVTRDRIHADIDWLDHKFTMIDTGGIEPDS 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308 +DI+ + ++ + ++ AD+I+ + ++ Sbjct: 66 NDIILSQMREQAQIAIDTADVIIFMTDV 93 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I I+G N GKSS+ N + + IV++I GTTRD + D+ G DTAG+R Sbjct: 179 RIAIVGKPNVGKSSIINKITGESRVIVSNIAGTTRDAIDTDVKWNGKDYVFIDTAGLRRK 238 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +EK I RT VE AD+++++ Sbjct: 239 SKVKEEIEKYSIIRTVTAVERADVVIIV 266 >gi|90579361|ref|ZP_01235171.1| GTP-binding protein EngA [Vibrio angustum S14] gi|90440194|gb|EAS65375.1| GTP-binding protein EngA [Vibrio angustum S14] Length = 500 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 37/98 (37%), Positives = 63/98 (64%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G + DTAGIR Sbjct: 213 KLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGQEYVLIDTAGIRRR 272 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 ++ VEK + +T VE+A+++LL+ I++++ IS Sbjct: 273 KNMHQAVEKFSVIQTLKAVEDANVVLLV--IDARENIS 308 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 49/84 (58%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD +LE + + DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAELEEHEFIVIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE + +++ +E AD++L L Sbjct: 65 EGVETKMAEQSLAAIEEADVVLFL 88 >gi|298492105|ref|YP_003722282.1| ribosome-associated GTPase EngA ['Nostoc azollae' 0708] gi|298234023|gb|ADI65159.1| ribosome-associated GTPase EngA ['Nostoc azollae' 0708] Length = 454 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 37/91 (40%), Positives = 52/91 (57%), Gaps = 3/91 (3%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 N K+ I+G N GKSSL NA ++ AIV+ I GTTRD + ++ G ++ DTAGI Sbjct: 175 NVIKVAIIGRPNVGKSSLLNAFVGEERAIVSPISGTTRDTIDTEIVRNGQTYRLIDTAGI 234 Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLL 305 R+ I E I R F + AD++LL+ Sbjct: 235 RKKKHIEYGTEFFSINRAFKAIRRADVVLLV 265 Score = 41.2 bits (95), Expect = 0.34, Method: Compositional matrix adjust. Identities = 19/35 (54%), Positives = 22/35 (62%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 + I+G N GKS+L N LA AIV D PG TRD Sbjct: 6 VAIIGRPNVGKSTLVNRLAGDQTAIVHDEPGVTRD 40 >gi|330446667|ref|ZP_08310319.1| small GTP-binding domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490858|dbj|GAA04816.1| small GTP-binding domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 500 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 37/98 (37%), Positives = 63/98 (64%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G + DTAGIR Sbjct: 213 KLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGQEYVLIDTAGIRRR 272 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 ++ VEK + +T VE+A+++LL+ I++++ IS Sbjct: 273 KNMHQAVEKFSVIQTLKAVEDANVVLLV--IDARENIS 308 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 49/84 (58%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD +LE + + DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAELEEHEFIVIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE + +++ +E AD++L L Sbjct: 65 EGVETKMAEQSLAAIEEADVVLFL 88 >gi|168334058|ref|ZP_02692274.1| small GTP-binding protein [Epulopiscium sp. 'N.t. morphotype B'] Length = 455 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 35/95 (36%), Positives = 58/95 (61%), Gaps = 3/95 (3%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 + K+ I+G N GKSSL N + +D IV+DI GTTR+ + ++ ++G + DTAG+ Sbjct: 189 DAIKVAIVGKPNVGKSSLVNKILGEDRVIVSDIAGTTRESVDTEVVIDGQKYVLIDTAGV 248 Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLLKEIN 309 R+ + +EK + RT +E AD++L+L + N Sbjct: 249 RKRKKVKEDIEKYSVIRTISAIERADIVLILIDAN 283 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 30/96 (31%), Positives = 56/96 (58%), Gaps = 1/96 (1%) Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 + N + ++G N GKS+LFN LAK ++I+ D PG TRD + D + + DT Sbjct: 13 VMNKPVVAVVGRPNVGKSTLFNRLAKAKISIIDDTPGVTRDRIYADAEWLNKKFTLVDTG 72 Query: 276 GIR-ETDDIVEKEGIKRTFLEVENADLILLLKEINS 310 GI +++D++ + K+ + ++ AD+I+ L ++ + Sbjct: 73 GIEPDSNDVILSQMRKQAEVAIDTADVIIFLVDVKT 108 >gi|85712733|ref|ZP_01043778.1| GTP-binding protein EngA [Idiomarina baltica OS145] gi|85693465|gb|EAQ31418.1| GTP-binding protein EngA [Idiomarina baltica OS145] Length = 479 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 62/98 (63%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + +D +V D+PGTTRD + I ++ +G + DTAG+R Sbjct: 193 KLAIVGRPNVGKSTLTNRILGEDRVVVFDMPGTTRDSVYIPMERDGREYVLIDTAGVRRR 252 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D+ +EK + +T +E+A+++L + I++++ IS Sbjct: 253 GRIDEAIEKYSVVKTLQAIEDANVVLAV--IDARETIS 288 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD + +GY + DT GI + Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQANYDGYQFIVVDTGGIHGDE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + +++ K++ +E AD++L L Sbjct: 65 EGIDEVMAKQSLQAIEEADVVLFL 88 >gi|326791376|ref|YP_004309197.1| ribosome-associated GTPase EngA [Clostridium lentocellum DSM 5427] gi|326542140|gb|ADZ83999.1| ribosome-associated GTPase EngA [Clostridium lentocellum DSM 5427] Length = 441 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 54/88 (61%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSL N + ++ IV++I GTTRD + ++ +EG + DTAGIR Sbjct: 179 RVAIIGKPNVGKSSLVNKIVGEERVIVSNIAGTTRDSVDTEVTIEGQEYVLIDTAGIRRR 238 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 I +EK I RT ++ AD++L+L Sbjct: 239 SKIKENIEKYSIIRTIAAIDRADVVLIL 266 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 53/90 (58%), Gaps = 1/90 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + ++G N GKS+LFN L K +IV D PG TRD + +++ + I DT GI ++ Sbjct: 6 VAVIGRPNVGKSTLFNRLTKSKTSIVDDTPGVTRDRIYGEVEWLNHKFTIIDTGGIEPDS 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310 DI+ + ++ +E+AD+I+ L ++ + Sbjct: 66 TDIILSQMRRQAEAAIESADVIIFLVDVKT 95 >gi|304398581|ref|ZP_07380453.1| ribosome-associated GTPase EngA [Pantoea sp. aB] gi|304353792|gb|EFM18167.1| ribosome-associated GTPase EngA [Pantoea sp. aB] Length = 496 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 56/88 (63%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + +D +V D+PGTTRD + I ++ +G + DTAG+R+ Sbjct: 209 KLAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 268 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLL 305 D VEK + +T +E+A++++L+ Sbjct: 269 AKISDTVEKFSVIKTLQAIEDANVVMLV 296 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 49/84 (58%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG + DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFIVIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE +++ L +E AD++L + Sbjct: 65 EGVETRMAEQSLLAIEEADVVLFM 88 >gi|227872320|ref|ZP_03990675.1| GTPase [Oribacterium sinus F0268] gi|227841827|gb|EEJ52102.1| GTPase [Oribacterium sinus F0268] Length = 440 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 54/90 (60%), Gaps = 1/90 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280 + ++G N GKS+LFN +A K ++IV D PG TRD + + + Y + DT GI + Sbjct: 6 VAVVGRPNVGKSTLFNTIAGKQISIVQDTPGVTRDRIYAEGNWLNYYFTMVDTGGIEPIS 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310 DD++ K+ + L +E AD+I+ + ++ S Sbjct: 66 DDVLLKQMRSQAELAIETADVIIFVTDVKS 95 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/117 (35%), Positives = 63/117 (53%), Gaps = 8/117 (6%) Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252 L D+L +++ H + L E KI ++G N GKSSL N L ++ IV+DI G Sbjct: 154 LGDLL---DEVVKHFPKEGLEEEEDGTLKIALIGKPNVGKSSLTNKLLGENRVIVSDIAG 210 Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRE----TDDIVEKEGIKRTFLEVENADLILLL 305 TTRD + ++ G DTAG+R T+DI E+ + RT V+ AD+ ++L Sbjct: 211 TTRDAIDTEVTYNGTPYIFIDTAGLRRKGKVTEDI-ERYSVIRTVAAVDRADICIVL 266 >gi|75909106|ref|YP_323402.1| GTP-binding protein EngA [Anabaena variabilis ATCC 29413] gi|123609166|sp|Q3M929|DER_ANAVT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|75702831|gb|ABA22507.1| Small GTP-binding protein domain protein [Anabaena variabilis ATCC 29413] Length = 453 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 38/91 (41%), Positives = 52/91 (57%), Gaps = 3/91 (3%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 N KI I+G N GKSSL NA A ++ IV+ I GTTRD + ++ G ++ DTAGI Sbjct: 175 NEIKIAIIGRPNVGKSSLLNAFAGEERVIVSPISGTTRDAIDTFIERNGQNYRLIDTAGI 234 Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLL 305 R+ I E I R F + AD++LL+ Sbjct: 235 RKKKSIDYGTEFFSINRAFKAIRRADVVLLV 265 Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 32/61 (52%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+L N LA + AIV D PG TRD + ++ DT G+ D Sbjct: 6 VAIIGRPNVGKSTLVNRLAGEQTAIVHDEPGVTRDRTYLPAYWSDREFQVVDTGGLVFND 65 Query: 282 D 282 D Sbjct: 66 D 66 >gi|92117234|ref|YP_576963.1| GTP-binding protein EngA [Nitrobacter hamburgensis X14] gi|122418012|sp|Q1QMP4|DER_NITHX RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|91800128|gb|ABE62503.1| Small GTP-binding protein domain [Nitrobacter hamburgensis X14] Length = 460 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 45/179 (25%), Positives = 85/179 (47%), Gaps = 29/179 (16%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G NAGKS+L N L ++ + + GTTRD ++++L+ +G +I DTAG+R Sbjct: 190 RVAIVGRPNAGKSTLINYLLGEERLLTSPEAGTTRDSISVELNWQGRDFRIFDTAGLRRR 249 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI-------------- 323 I +EK + T A++++L+ + ++ E + D I Sbjct: 250 SRIEEKLEKLSVADTLRAARFAEVVVLMMDAQNRFEEQDLRIADLIEREGRALVIAVNKW 309 Query: 324 -FIGTKSDLYSTYTEEYDHL-----------ISSFTGEGLEELINKIKSILSNKFKKLP 370 +G +S L + + DHL +S GEG++ L+ I+ + +++P Sbjct: 310 DLMGRQSSLIAALRTDADHLLPQVKGMPIVAVSGLMGEGVDRLMTAIQDAYAIWNRRVP 368 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 33/60 (55%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 + I I+G N GKS+LFN L + +A+V D PG TRD L + DTAG+ E Sbjct: 3 FTIAIIGRPNVGKSTLFNRLVGQKLALVDDKPGVTRDRREGQARLGDLDFTVIDTAGLDE 62 >gi|288930105|ref|ZP_06423943.1| ribosome-associated GTPase EngA [Prevotella sp. oral taxon 317 str. F0108] gi|288328578|gb|EFC67171.1| ribosome-associated GTPase EngA [Prevotella sp. oral taxon 317 str. F0108] Length = 437 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 36/90 (40%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 + I+G N GKS+LFN L K AIV+D GTTRD D G + DT G + + Sbjct: 5 VAIVGRPNVGKSTLFNRLTKTRSAIVSDTAGTTRDRQYGKCDWAGREFSVVDTGGWVVNS 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310 DDI E ++ + E ADL+L L ++N+ Sbjct: 65 DDIFEDAIRRQVLVATEEADLVLFLVDVNT 94 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 38/105 (36%), Positives = 60/105 (57%), Gaps = 6/105 (5%) Query: 207 ISQGKLGEI--IRNGY-KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD 263 I+Q K GE + +G + ++G NAGKSS+ NA +D IVT+I GTTRD + D Sbjct: 160 IAQLKPGENENVEDGIPRFAVVGRPNAGKSSIVNAFIGEDRNIVTEIAGTTRDSIYTRFD 219 Query: 264 LEGYLVKISDTAGIRETDDIVEK---EGIKRTFLEVENADLILLL 305 G+ + DTAGIR + + E + R+ +E++D+ +L+ Sbjct: 220 KFGFDFYLVDTAGIRRKNKVTEDLEFYSVMRSIRAIEHSDVCILM 264 >gi|254362978|ref|ZP_04979042.1| possible GTP-binding protein [Mannheimia haemolytica PHL213] gi|153094634|gb|EDN75438.1| possible GTP-binding protein [Mannheimia haemolytica PHL213] Length = 511 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 51/183 (27%), Positives = 86/183 (46%), Gaps = 33/183 (18%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G I DTAG+R+ Sbjct: 224 KIAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGQQYTIIDTAGVRKR 283 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPKNIDFI----------- 323 + VEK + +T +++A+++LL E S +++S + FI Sbjct: 284 GKVNLAVEKFSVIKTLQAIQDANVVLLTIEAREGISDQDLSL---LGFILNAGRSLVIVV 340 Query: 324 --FIGTKSDLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLP 370 + G D+ E D H IS+ G G+ L + +K + +K Sbjct: 341 NKWDGLSQDIKDQVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSVKEAYACATQKTS 400 Query: 371 FSI 373 S+ Sbjct: 401 TSM 403 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 51/84 (60%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++ GY + DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANIAGYDFIVIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE++ +++ L +E AD++L L Sbjct: 65 EGVEEKMAEQSLLAIEEADVVLFL 88 >gi|148241565|ref|YP_001226722.1| GTP-binding protein EngA [Synechococcus sp. RCC307] gi|166225929|sp|A5GR60|DER_SYNR3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|147849875|emb|CAK27369.1| GTP-binding protein engA [Synechococcus sp. RCC307] Length = 452 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 53/88 (60%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSL N + ++ AIV+ I GTTRD + ++ EG K+ DTAGIR Sbjct: 178 QMAIVGRPNVGKSSLLNTVCGENRAIVSPIRGTTRDTIDTSIEREGQSWKLLDTAGIRRR 237 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + E GI R+F +E +D+ +L+ Sbjct: 238 RSVNYGPEFFGINRSFKAIERSDVCVLV 265 Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 32/61 (52%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+L N L + AIV D PG TRD + G ++ DT G+ D Sbjct: 6 VAIIGRPNVGKSTLVNRLCRSRDAIVHDEPGVTRDRTYQEGFWGGRTFRVVDTGGLVFDD 65 Query: 282 D 282 D Sbjct: 66 D 66 >gi|299133685|ref|ZP_07026879.1| ribosome-associated GTPase EngA [Afipia sp. 1NLS2] gi|298591521|gb|EFI51722.1| ribosome-associated GTPase EngA [Afipia sp. 1NLS2] Length = 461 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 49/181 (27%), Positives = 84/181 (46%), Gaps = 29/181 (16%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ +LG NAGKS+L N L ++ + + GTTRD + +D++ +G +++ DTAG+R Sbjct: 191 RVAVLGRPNAGKSTLINHLLGEERLLTSPEAGTTRDSIAVDVEWKGRKLRVFDTAGLRRR 250 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNID--------FIFIGTKS 329 DD +EK + V A++++L+ + ++ E + D + K Sbjct: 251 SRIDDKLEKLSVSDALRAVRFAEVVVLVVDAQNRFEEQDLRLADLVEREGRALVLAVNKW 310 Query: 330 DLY-------STYTEEYDHL-----------ISSFTGEGLEELINKIKSILSNKFKKLPF 371 DL E DHL IS GEG++ LI I+ + K++P Sbjct: 311 DLVERAPSAIGKLRETADHLLPQVRGAPVVAISGLMGEGIDRLIGAIEKAYATWNKRIPT 370 Query: 372 S 372 S Sbjct: 371 S 371 Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust. Identities = 19/37 (51%), Positives = 25/37 (67%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 + I I+G N GKS+LFN L + +A+V D PG TRD Sbjct: 3 FTIAIIGRPNVGKSTLFNRLVGQKLALVDDQPGVTRD 39 >gi|260887150|ref|ZP_05898413.1| ribosome-associated GTPase EngA [Selenomonas sputigena ATCC 35185] gi|330839080|ref|YP_004413660.1| ribosome-associated GTPase EngA [Selenomonas sputigena ATCC 35185] gi|260863212|gb|EEX77712.1| ribosome-associated GTPase EngA [Selenomonas sputigena ATCC 35185] gi|329746844|gb|AEC00201.1| ribosome-associated GTPase EngA [Selenomonas sputigena ATCC 35185] Length = 442 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 34/85 (40%), Positives = 53/85 (62%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFN L +K V+IV D+PG TRD + +D + G + DT GI +T Sbjct: 6 VAIVGRPNVGKSTLFNKLGRKRVSIVDDLPGVTRDRIYLDAEWLGKEFTMIDTGGIELDT 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 D++ + ++ + +E AD+IL L Sbjct: 66 SDVILRSMRQQAQIAMEEADVILFL 90 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 3/87 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--- 278 I ++G N GKSSL NAL ++ IV+D+ GTTRD + E + DTAG+R Sbjct: 179 IAVIGRPNVGKSSLVNALLGEERVIVSDVAGTTRDAIDTHFMAEDTKFILIDTAGMRRKG 238 Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL 305 + D +E+ + R V+ AD++L++ Sbjct: 239 KIDAPIERYSVMRALRAVDRADVVLVV 265 >gi|255525663|ref|ZP_05392596.1| small GTP-binding protein [Clostridium carboxidivorans P7] gi|296185422|ref|ZP_06853832.1| ribosome-associated GTPase EngA [Clostridium carboxidivorans P7] gi|255510649|gb|EET86956.1| small GTP-binding protein [Clostridium carboxidivorans P7] gi|296050256|gb|EFG89680.1| ribosome-associated GTPase EngA [Clostridium carboxidivorans P7] Length = 438 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI +G N GKSSL N L +D IV++IPGTTRD + L+ E + DTAG+R Sbjct: 178 KIAFVGKPNVGKSSLINKLLGEDRVIVSEIPGTTRDAIDSYLETEQGKFTLIDTAGLRRK 237 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E+ + RT+ +E AD+ +L+ Sbjct: 238 SKVKEEIERYSVIRTYTAIERADVCILM 265 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 32/85 (37%), Positives = 50/85 (58%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFN +A K ++IV D PG TRD + + + Y I DT GI E Sbjct: 6 VAIVGRPNVGKSTLFNKMAGKRISIVQDTPGVTRDRIYAEAEWLKYNFTIIDTGGIEPEN 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 DI+ + ++ + VE A++I+ + Sbjct: 66 SDIIISQMRRQATMAVETANVIVFI 90 >gi|91203327|emb|CAJ72966.1| similar to GTP-binding protein [Candidatus Kuenenia stuttgartiensis] Length = 446 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 K+ I+G NAGKS+L N LA+K IV+++PGTTRD + + +++ DTAG+R Sbjct: 180 KMAIVGKRNAGKSTLINTLARKQRVIVSEVPGTTRDSIDVKFEMDNKQFLAIDTAGVRKK 239 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305 + D +E + R + AD++L L Sbjct: 240 SQVKDSIEFYSMARAERSIRRADVVLFL 267 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 53/227 (23%), Positives = 99/227 (43%), Gaps = 48/227 (21%) Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282 VI+G N GKS+LFN +++ ++IV G TRD ++ ++ + + ++ DT G+ TD Sbjct: 7 VIVGRPNVGKSALFNCFSRRRISIVEPTSGVTRDRVSTEIRHKDCVFELVDTGGMGITDS 66 Query: 283 IVEKEGIKRTF-LEVENADLILLLKEINS----------------KKEISFPKNIDFIFI 325 E I+ + + AD++L + ++ KKE+ I I Sbjct: 67 DGLTEDIEMQIEVALAAADVVLFVVDVREGVTPLDRIVAERLRHVKKEV--------ILI 118 Query: 326 GTKSDL--YSTYTEEYD-------HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376 K D + E++ H +S+ G G +L++KI S+ P P Sbjct: 119 ANKVDTPKFEHSMGEFNELGFGEPHPVSAIEGYGRSDLLDKIISL-------FPLQEP-- 169 Query: 377 KRHLYHLSQTVRYLEMASLNEKDCGLDIIAENL-RLASVSLGKITGC 422 Y + +V ++MA + +++ G + L R V + ++ G Sbjct: 170 ----YDNTDSVPIMKMAIVGKRNAGKSTLINTLARKQRVIVSEVPGT 212 >gi|166712110|ref|ZP_02243317.1| GTP-binding protein EngA [Xanthomonas oryzae pv. oryzicola BLS256] Length = 465 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 41/162 (25%), Positives = 83/162 (51%), Gaps = 17/162 (10%) Query: 161 WIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLK-----------NDISSHISQ 209 W+ KL + +D ++EE V++ ++ +++ L ++ + + + Sbjct: 106 WLRKLARQTVLVINKIDGTDEETVRSEFARYGFCNVVALSAAHRQGIDELLEEVGARLPE 165 Query: 210 GKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266 GE++ N +I +G N GKS+L N L ++ I +++PGTTRD + +DL+ +G Sbjct: 166 EGSGELLDNDPARVRIAFVGRPNVGKSTLVNRLLGEERMIASEVPGTTRDSIAVDLERDG 225 Query: 267 YLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLL 305 ++ DTAG+R + ++ VEK +T +E + +L+ Sbjct: 226 RQYRLIDTAGLRRRGKVEEAVEKFSAFKTLQAIEQCQVAVLM 267 Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust. Identities = 17/35 (48%), Positives = 24/35 (68%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 + ++G N GKS++FNAL + A+V D PG TRD Sbjct: 5 VALVGRPNVGKSTIFNALTRTRDALVHDQPGVTRD 39 >gi|255021269|ref|ZP_05293318.1| GTP-binding protein EngA [Acidithiobacillus caldus ATCC 51756] gi|254969280|gb|EET26793.1| GTP-binding protein EngA [Acidithiobacillus caldus ATCC 51756] Length = 447 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 43/145 (29%), Positives = 79/145 (54%), Gaps = 12/145 (8%) Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250 E L D +F D++ + + E+ +G +I +LG N GKS+L NA+ + IV D Sbjct: 153 ETLLDAIF--ADLA--VPEEAAAELSLSGPRIAVLGRPNVGKSTLVNAMLGEQRVIVYDA 208 Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKE 307 PGTTRD + I + G + DTAGIR + +EK + +T ++ AD++L++ Sbjct: 209 PGTTRDSIRIPYERAGRPYVMIDTAGIRRRARVGEGLEKLSVLKTLAALKEADVVLMV-- 266 Query: 308 INSKKEISFPKNIDFIFIGTKSDLY 332 ++++ ++ + D +G ++L+ Sbjct: 267 LDARDGVT---DQDAHLVGVAAELW 288 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 18/35 (51%), Positives = 24/35 (68%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 I ++G N GKS+LFN L + A+V D+PG TRD Sbjct: 5 IALVGRPNVGKSTLFNRLTRSREALVADLPGLTRD 39 >gi|238921035|ref|YP_002934550.1| GTP-binding protein EngA [Edwardsiella ictaluri 93-146] gi|259645874|sp|C5BES7|DER_EDWI9 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|238870604|gb|ACR70315.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] Length = 494 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 38/103 (36%), Positives = 63/103 (61%), Gaps = 5/103 (4%) Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 I KI I+G N GKS+L N + +D +V D+PGTTRD + I ++ + + DTA Sbjct: 203 INQPIKIAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMERDEREYVLIDTA 262 Query: 276 GIR---ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 G+R + D VEK + +T +E+A+++LL+ I++++ IS Sbjct: 263 GVRKRGKVTDTVEKFSVIKTLQAIEDANVVLLV--IDARQGIS 303 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 49/84 (58%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++ G+ I DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVNGHEFIIIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE +++ + +E AD++L L Sbjct: 65 NGVETHMAEQSLMAIEEADIVLFL 88 >gi|237807666|ref|YP_002892106.1| small GTP-binding protein [Tolumonas auensis DSM 9187] gi|259645887|sp|C4LC41|DER_TOLAT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|237499927|gb|ACQ92520.1| small GTP-binding protein [Tolumonas auensis DSM 9187] Length = 498 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 38/98 (38%), Positives = 61/98 (62%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K I+G N GKS+L N + +D IV D+PGTTRD + I L+ + + DTAG+R+ Sbjct: 213 KFAIIGRPNVGKSTLTNRMLGEDRVIVYDLPGTTRDSIYIPLERDDQHYIVIDTAGVRKK 272 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 I VEK + +T +E+A+++LLL I++++ +S Sbjct: 273 KKIYETVEKFSVVKTLQAIEDANVVLLL--IDAREGVS 308 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/84 (28%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++ + DT GI ++ Sbjct: 5 VALVGRPNVGKSTLFNRLTRSRDALVADFPGLTRDRKYGQAVVDDMNFIVVDTGGIDGSE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + +E + +++ ++ +D++L + Sbjct: 65 EGIEVKMAEQSLQAIDESDVVLFM 88 >gi|37222112|gb|AAP49306.1| Uvs063 [uncultured bacterium] Length = 435 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G NAGKSS NAL +D IVTDI GTTRD + D G+ + DTAGIR Sbjct: 177 RFAVVGRPNAGKSSFINALIGQDRYIVTDIAGTTRDAIDTKFDRFGFEFNLVDTAGIRRK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E + R+ +E+AD+ +L+ Sbjct: 237 AKVKEDLEFYSVMRSVRAIEHADICILV 264 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 1/88 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 + I+G N GKS+LFN L ++ AIV + G TRD + G + DT G +R + Sbjct: 5 VAIVGRPNVGKSTLFNRLIQRREAIVDSVSGVTRDRNYGKSEWNGKEFSVIDTGGYVRGS 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308 DD+ E E K+ L ++ AD+I+ + ++ Sbjct: 65 DDVFEGEIRKQVELAIDEADVIIFVVDV 92 >gi|238924644|ref|YP_002938160.1| GTP-binding protein EngA [Eubacterium rectale ATCC 33656] gi|259645876|sp|C4ZD63|DER_EUBR3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|238876319|gb|ACR76026.1| GTP-binding protein EngA [Eubacterium rectale ATCC 33656] gi|291525305|emb|CBK90892.1| ribosome-associated GTPase EngA [Eubacterium rectale DSM 17629] gi|291529236|emb|CBK94822.1| ribosome-associated GTPase EngA [Eubacterium rectale M104/1] Length = 441 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 53/88 (60%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSL N LA++D IV+DI GTTRD + + +G DTAG+R Sbjct: 179 RVAIVGKPNVGKSSLINKLAREDRVIVSDIAGTTRDAIDTAIKYDGKEYIFIDTAGLRRK 238 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + I +E+ I R VE AD+++++ Sbjct: 239 NKIKEDIERYSIIRAVSAVERADVVIVV 266 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 54/88 (61%), Gaps = 1/88 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFNALA + ++IV D PG TRD + D+ Y + DT GI E+ Sbjct: 6 VAIVGRPNVGKSTLFNALAGERISIVKDTPGVTRDRIYADVSWLDYNFTMIDTGGIEPES 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308 D++ + ++ + ++ AD+I+ + ++ Sbjct: 66 GDVILSQMREQAQIAIDTADVIIFITDV 93 >gi|260910017|ref|ZP_05916700.1| ribosome-associated GTPase EngA [Prevotella sp. oral taxon 472 str. F0295] gi|260635847|gb|EEX53854.1| ribosome-associated GTPase EngA [Prevotella sp. oral taxon 472 str. F0295] Length = 437 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 36/90 (40%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 + I+G N GKS+LFN L K AIV+D GTTRD D G + DT G + + Sbjct: 5 VAIVGRPNVGKSTLFNRLTKTRSAIVSDTAGTTRDRQYGKCDWSGREFSVVDTGGWVVNS 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310 DDI E ++ + E ADL+L L ++N+ Sbjct: 65 DDIFEDAIRRQVLVATEEADLVLFLVDVNT 94 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G N GKSS+ NA +D IVT+I GTTRD + D G+ + DTAGIR Sbjct: 177 RFAVVGRPNVGKSSIINAFIGEDRNIVTEIAGTTRDSIYTRFDKFGFDFYLVDTAGIRRK 236 Query: 281 DDIVEK---EGIKRTFLEVENADLILLL 305 + + E + R+ +E++D+ +L+ Sbjct: 237 NKVTEDLEFYSVMRSIRSIEHSDVCILM 264 >gi|167854675|ref|ZP_02477455.1| GTP-binding protein EngA [Haemophilus parasuis 29755] gi|167854212|gb|EDS25446.1| GTP-binding protein EngA [Haemophilus parasuis 29755] Length = 504 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 87/183 (47%), Gaps = 33/183 (18%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G I DTAG+R+ Sbjct: 217 KIAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGQQYTIIDTAGVRKR 276 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNIDFIFIGTKS----- 329 + VEK + +T +++A+++LL ++ S +++S + FI KS Sbjct: 277 GKVHLAVEKFSVIKTLQAIQDANVVLLTIDARDGVSDQDLSL---LGFILNAGKSLVIVV 333 Query: 330 --------DLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLP 370 D+ E D H IS+ G G+ L + I+ KK+ Sbjct: 334 NKWDGLSQDIKDNVKSELDRRLDFIDFARVHFISALHGSGVGNLFSSIQEAYQCATKKMT 393 Query: 371 FSI 373 S+ Sbjct: 394 TSM 396 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/163 (25%), Positives = 82/163 (50%), Gaps = 17/163 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++ G+ + DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRNALVADFPGLTRDRKYGHANIAGHDFIVIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDL-- 331 + VE++ +++ L ++ AD++L L + + + +N + + K+D Sbjct: 65 EGVEEKMAEQSLLAIKEADVVLFLVDARAGLLPADVGIAQYLRQRNKTTVVVANKTDGID 124 Query: 332 YSTYTEEYDHL-------ISSFTGEGLEELINKIKSILSNKFK 367 ++ E+ L I++ G G+ +LI ++ + L+ K + Sbjct: 125 ADSHIAEFYQLGLGEVEPIAAAQGRGVTQLIEQVLAPLAEKLE 167 >gi|323141760|ref|ZP_08076630.1| ribosome biogenesis GTPase Der [Phascolarctobacterium sp. YIT 12067] gi|322413749|gb|EFY04598.1| ribosome biogenesis GTPase Der [Phascolarctobacterium sp. YIT 12067] Length = 442 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 55/88 (62%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 K+ ++G N GKSS+FNAL ++ +IV+DI GTTRD + + G DTAG+R Sbjct: 180 KVALIGRPNVGKSSIFNALVGEERSIVSDIAGTTRDAIDTPVVRNGQKYLFIDTAGMRRK 239 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305 + D+ +EK + R+ V+ +D++L++ Sbjct: 240 AKVDEPIEKYSVMRSLRAVDRSDVVLMV 267 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/117 (32%), Positives = 52/117 (44%), Gaps = 21/117 (17%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG----- 276 + I+G N GKS+LFN A ++IV D PG TRD L + + + DT G Sbjct: 6 VAIVGRPNVGKSTLFNIFANSRISIVEDTPGVTRDRLYATAEWLDHEFMMVDTGGIEIMN 65 Query: 277 -------IRETDDIVEKEG-------IKRTFLEVENADLILLLKEINSKKEISFPKN 319 IR+ I KE R + E+AD+ LL++ SKK I N Sbjct: 66 ADAIAVSIRQQAQIAIKEADVILFVCDARAGITTEDADVARLLRQ--SKKPIVLAVN 120 >gi|153843824|ref|ZP_01993596.1| GTP-binding protein EngA [Vibrio parahaemolyticus AQ3810] gi|149745287|gb|EDM56538.1| GTP-binding protein EngA [Vibrio parahaemolyticus AQ3810] Length = 286 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 37/98 (37%), Positives = 63/98 (64%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G I DTAG+R Sbjct: 126 KLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVIIDTAGVRRR 185 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 ++ VEK + +T VE+A+++LL+ I++++ IS Sbjct: 186 GRINETVEKFSVVKTLKAVEDANVVLLV--IDARENIS 221 >gi|219870952|ref|YP_002475327.1| GTP-binding protein EngA [Haemophilus parasuis SH0165] gi|254783156|sp|B8F4X7|DER_HAEPS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|219691156|gb|ACL32379.1| GTP-binding protein EngA [Haemophilus parasuis SH0165] Length = 504 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 87/183 (47%), Gaps = 33/183 (18%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G I DTAG+R+ Sbjct: 217 KIAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGQQYTIIDTAGVRKR 276 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNIDFIFIGTKS----- 329 + VEK + +T +++A+++LL ++ S +++S + FI KS Sbjct: 277 GKVHLAVEKFSVIKTLQAIQDANVVLLTIDARDGVSDQDLSL---LGFILNAGKSLVIVV 333 Query: 330 --------DLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLP 370 D+ E D H IS+ G G+ L + I+ KK+ Sbjct: 334 NKWDGLSQDIKDNVKSELDRRLDFIDFARVHFISALHGSGVGNLFSSIQEAYQCATKKMT 393 Query: 371 FSI 373 S+ Sbjct: 394 TSM 396 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/163 (25%), Positives = 82/163 (50%), Gaps = 17/163 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++ G+ + DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRNALVADFPGLTRDRKYGHANIAGHDFIVIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDL-- 331 + VE++ +++ L ++ AD++L L + + + +N + + K+D Sbjct: 65 EGVEEKMAEQSLLAIKEADVVLFLVDARAGLLPADVGIAQYLRQRNKTTVVVANKTDGID 124 Query: 332 YSTYTEEYDHL-------ISSFTGEGLEELINKIKSILSNKFK 367 ++ E+ L I++ G G+ +LI ++ + L+ K + Sbjct: 125 ADSHIAEFYQLGLGEVEPIAAAQGRGVTQLIEQVLAPLAEKLE 167 >gi|146299639|ref|YP_001194230.1| GTP-binding protein EngA [Flavobacterium johnsoniae UW101] gi|238686648|sp|A5FIR0|DER_FLAJ1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|146154057|gb|ABQ04911.1| small GTP-binding protein [Flavobacterium johnsoniae UW101] Length = 437 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G NAGKSS NAL +D IVTDI GTTRD + D G+ + DTAGIR Sbjct: 179 RFAVVGRPNAGKSSFINALIGQDRYIVTDIAGTTRDAIDTKFDRFGFEFNLVDTAGIRRK 238 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E + R+ +E+AD+ +L+ Sbjct: 239 AKVKEDLEFYSVMRSVRAIEHADVCILV 266 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 1/88 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 + I+G N GKS+LFN L ++ AIV + G TRD + G + DT G +R + Sbjct: 6 VAIVGRPNVGKSTLFNRLIQRREAIVDSVSGVTRDRNYGKSEWNGKEFSVIDTGGYVRGS 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308 DD+ E E K+ L ++ AD+I+ + ++ Sbjct: 66 DDVFEGEIRKQVELAIDEADVIIFVVDV 93 >gi|22125256|ref|NP_668679.1| GTP-binding protein EngA [Yersinia pestis KIM 10] gi|45442513|ref|NP_994052.1| GTP-binding protein EngA [Yersinia pestis biovar Microtus str. 91001] gi|108808309|ref|YP_652225.1| GTP-binding protein EngA [Yersinia pestis Antiqua] gi|108811426|ref|YP_647193.1| GTP-binding protein EngA [Yersinia pestis Nepal516] gi|145599492|ref|YP_001163568.1| GTP-binding protein EngA [Yersinia pestis Pestoides F] gi|149365335|ref|ZP_01887370.1| putative GTP-binding protein [Yersinia pestis CA88-4125] gi|153948065|ref|YP_001400171.1| GTP-binding protein EngA [Yersinia pseudotuberculosis IP 31758] gi|162419655|ref|YP_001605020.1| GTP-binding protein EngA [Yersinia pestis Angola] gi|165925991|ref|ZP_02221823.1| GTP-binding protein EngA [Yersinia pestis biovar Orientalis str. F1991016] gi|165937070|ref|ZP_02225635.1| GTP-binding protein EngA [Yersinia pestis biovar Orientalis str. IP275] gi|166008076|ref|ZP_02228974.1| GTP-binding protein EngA [Yersinia pestis biovar Antiqua str. E1979001] gi|166212264|ref|ZP_02238299.1| GTP-binding protein EngA [Yersinia pestis biovar Antiqua str. B42003004] gi|167398998|ref|ZP_02304522.1| GTP-binding protein EngA [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421200|ref|ZP_02312953.1| GTP-binding protein EngA [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423353|ref|ZP_02315106.1| GTP-binding protein EngA [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170023543|ref|YP_001720048.1| GTP-binding protein EngA [Yersinia pseudotuberculosis YPIII] gi|218929935|ref|YP_002347810.1| GTP-binding protein EngA [Yersinia pestis CO92] gi|229838454|ref|ZP_04458613.1| 50S ribosome associated factor involved in the biogenesis and stability of 50S ribosomal subunits [Yersinia pestis biovar Orientalis str. PEXU2] gi|229895156|ref|ZP_04510332.1| 50S ribosome associated factor involved in the biogenesis and stability of 50S ribosomal subunits [Yersinia pestis Pestoides A] gi|229899021|ref|ZP_04514165.1| 50S ribosome associated factor involved in the biogenesis and stability of 50S ribosomal subunits [Yersinia pestis biovar Orientalis str. India 195] gi|229901683|ref|ZP_04516805.1| 50S ribosome associated factor involved in the biogenesis and stability of 50S ribosomal subunits [Yersinia pestis Nepal516] gi|270489878|ref|ZP_06206952.1| ribosome-associated GTPase EngA [Yersinia pestis KIM D27] gi|294504563|ref|YP_003568625.1| GTP-binding protein EngA [Yersinia pestis Z176003] gi|26006726|sp|Q8ZCT9|DER_YERPE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|123246587|sp|Q1CK87|DER_YERPN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|123372277|sp|Q1C5J2|DER_YERPA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|166225935|sp|A4TMT3|DER_YERPP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|166920105|sp|A7FFZ3|DER_YERP3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|238687331|sp|A9R7Z8|DER_YERPG RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|238688573|sp|B1JSA4|DER_YERPY RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|21958127|gb|AAM84930.1|AE013738_7 putative GTP-binding factor [Yersinia pestis KIM 10] gi|45437378|gb|AAS62929.1| putative GTP-binding protein [Yersinia pestis biovar Microtus str. 91001] gi|108775074|gb|ABG17593.1| GTP-binding protein [Yersinia pestis Nepal516] gi|108780222|gb|ABG14280.1| putative GTP-binding protein [Yersinia pestis Antiqua] gi|115348546|emb|CAL21486.1| putative GTP-binding protein [Yersinia pestis CO92] gi|145211188|gb|ABP40595.1| GTP-binding protein [Yersinia pestis Pestoides F] gi|149291748|gb|EDM41822.1| putative GTP-binding protein [Yersinia pestis CA88-4125] gi|152959560|gb|ABS47021.1| GTP-binding protein EngA [Yersinia pseudotuberculosis IP 31758] gi|162352470|gb|ABX86418.1| GTP-binding protein EngA [Yersinia pestis Angola] gi|165914933|gb|EDR33545.1| GTP-binding protein EngA [Yersinia pestis biovar Orientalis str. IP275] gi|165922195|gb|EDR39372.1| GTP-binding protein EngA [Yersinia pestis biovar Orientalis str. F1991016] gi|165992458|gb|EDR44759.1| GTP-binding protein EngA [Yersinia pestis biovar Antiqua str. E1979001] gi|166206195|gb|EDR50675.1| GTP-binding protein EngA [Yersinia pestis biovar Antiqua str. B42003004] gi|166960689|gb|EDR56710.1| GTP-binding protein EngA [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051502|gb|EDR62910.1| GTP-binding protein EngA [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057523|gb|EDR67269.1| GTP-binding protein EngA [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169750077|gb|ACA67595.1| small GTP-binding protein [Yersinia pseudotuberculosis YPIII] gi|229681612|gb|EEO77706.1| 50S ribosome associated factor involved in the biogenesis and stability of 50S ribosomal subunits [Yersinia pestis Nepal516] gi|229687966|gb|EEO80038.1| 50S ribosome associated factor involved in the biogenesis and stability of 50S ribosomal subunits [Yersinia pestis biovar Orientalis str. India 195] gi|229694820|gb|EEO84867.1| 50S ribosome associated factor involved in the biogenesis and stability of 50S ribosomal subunits [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701918|gb|EEO89941.1| 50S ribosome associated factor involved in the biogenesis and stability of 50S ribosomal subunits [Yersinia pestis Pestoides A] gi|262362442|gb|ACY59163.1| GTP-binding protein EngA [Yersinia pestis D106004] gi|262366551|gb|ACY63108.1| GTP-binding protein EngA [Yersinia pestis D182038] gi|270338382|gb|EFA49159.1| ribosome-associated GTPase EngA [Yersinia pestis KIM D27] gi|294355022|gb|ADE65363.1| GTP-binding protein EngA [Yersinia pestis Z176003] gi|320016011|gb|ADV99582.1| ferrous iron transport protein B [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 495 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 48/155 (30%), Positives = 76/155 (49%), Gaps = 19/155 (12%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L A+V D PG TRD ++EG+ + DT GI T+ Sbjct: 5 IALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGHEFIVVDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL---------------KEINSKKEISF--PKNIDFIF 324 D VE + ++ L +E AD++L + + + S+++ +F D I Sbjct: 65 DGVETKMAGQSLLAIEEADIVLFMVDARAGLMPADQGIAQHLRSREKATFLVANKTDGID 124 Query: 325 IGTKS-DLYSTYTEEYDHLISSFTGEGLEELINKI 358 T + D YS E H I++ G G+ +LI + Sbjct: 125 PDTATADFYSLGLGEV-HAIAASHGRGVTQLIEDV 158 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 60/98 (61%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + +D +V D+PGTTRD + I + + + DTAG+R+ Sbjct: 209 KLAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMTRDDREYILIDTAGVRKR 268 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 I VEK + +T +E+++++LL+ I+++ IS Sbjct: 269 GKITETVEKFSVIKTLQAIEDSNVVLLV--IDARDGIS 304 >gi|260776629|ref|ZP_05885524.1| GTP-binding protein EngA [Vibrio coralliilyticus ATCC BAA-450] gi|260607852|gb|EEX34117.1| GTP-binding protein EngA [Vibrio coralliilyticus ATCC BAA-450] Length = 495 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 36/98 (36%), Positives = 63/98 (64%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G + DTAG+R Sbjct: 208 KLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRRR 267 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 ++ VEK + +T VE+A+++LL+ I++++ IS Sbjct: 268 KRINETVEKFSVVKTLKAVEDANVVLLV--IDARENIS 303 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD L + + DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE + +++ ++ AD++L + Sbjct: 65 EGVETKMAEQSLAAIDEADVVLFM 88 >gi|303239305|ref|ZP_07325833.1| ribosome-associated GTPase EngA [Acetivibrio cellulolyticus CD2] gi|302593091|gb|EFL62811.1| ribosome-associated GTPase EngA [Acetivibrio cellulolyticus CD2] Length = 440 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 39/89 (43%), Positives = 55/89 (61%), Gaps = 5/89 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRE 279 K+ ++G NAGKSSL N + +D IV+DIPGTTRD + T + EG V I DTAGIR Sbjct: 179 KVAVIGKPNAGKSSLINKVLGEDRVIVSDIPGTTRDAIDTYVENEEGKFVFI-DTAGIRR 237 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLL 305 I +E+ R++ +E AD+ L++ Sbjct: 238 QSKINENIERYSTIRSWTAIERADVCLIM 266 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/85 (30%), Positives = 49/85 (57%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280 + I+G N GKS+ FN LA + ++IV D PG TRD + +++ + DT GI + Sbjct: 6 VAIVGRPNVGKSTFFNYLAGRRISIVEDTPGVTRDRIYTEVEWRNRKFTLIDTGGIEPYS 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 +D + ++ + + +E A++I+ + Sbjct: 66 EDKIMQQMKSQAEIAIETANVIVFM 90 >gi|261252182|ref|ZP_05944755.1| GTP-binding protein EngA [Vibrio orientalis CIP 102891] gi|260935573|gb|EEX91562.1| GTP-binding protein EngA [Vibrio orientalis CIP 102891] Length = 495 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 36/98 (36%), Positives = 63/98 (64%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G + DTAG+R Sbjct: 208 KLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRRR 267 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 ++ VEK + +T VE+A+++LL+ I++++ IS Sbjct: 268 KRINETVEKFSVVKTLKAVEDANVVLLV--IDARENIS 303 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD L + + DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE + +++ ++ AD++L + Sbjct: 65 EGVETKMAEQSLAAIDEADVVLFM 88 >gi|237747713|ref|ZP_04578193.1| GTP-binding protein engA [Oxalobacter formigenes OXCC13] gi|229379075|gb|EEO29166.1| GTP-binding protein engA [Oxalobacter formigenes OXCC13] Length = 446 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 34/98 (34%), Positives = 61/98 (62%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS++ NAL ++ I D+PGTTRD + I + +G + DTAG+R+ Sbjct: 183 KLAIVGRPNVGKSTMINALLGEERVIAFDLPGTTRDAIEIPFERDGKQYTLVDTAGLRKR 242 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + +EK + +T + A+++LLL ++++++IS Sbjct: 243 GKVFQAIEKFSVVKTLQAISEANVVLLL--MDAQQDIS 278 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 9/89 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L + A+V D PG TRD + + + DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRAALVADYPGLTRDRHYGEGRMGDRPFLVIDTGGF---- 60 Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305 + V KEG+ K+T V AD+++ + Sbjct: 61 EPVVKEGVMQEMAKQTKQAVAEADVVIFI 89 >gi|294637684|ref|ZP_06715962.1| ribosome-associated GTPase EngA [Edwardsiella tarda ATCC 23685] gi|291089160|gb|EFE21721.1| ribosome-associated GTPase EngA [Edwardsiella tarda ATCC 23685] Length = 496 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 37/98 (37%), Positives = 62/98 (63%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 KI I+G N GKS+L N + +D +V D+PGTTRD + I ++ + + DTAG+R Sbjct: 210 KIAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRKR 269 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + D VEK + +T +E+A+++LL+ I++++ IS Sbjct: 270 GKVTDTVEKFSVIKTLQAIEDANVVLLV--IDARQGIS 305 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/89 (35%), Positives = 51/89 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++ G+ I DT GI ++ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVNGHEFIIIDTGGIDGSE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310 + VE +++ L +E AD++L L + S Sbjct: 65 NGVETHMAEQSLLAIEEADIVLFLVDARS 93 >gi|291085040|ref|ZP_06570912.1| ribosome-associated GTPase EngA [Citrobacter youngae ATCC 29220] gi|291071734|gb|EFE09843.1| ribosome-associated GTPase EngA [Citrobacter youngae ATCC 29220] Length = 504 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 36/98 (36%), Positives = 63/98 (64%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + +D +V D+PGTTRD + I ++ +G + DTAG+R+ Sbjct: 218 KLAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 277 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 I VEK + +T +E+A++++L+ I++++ IS Sbjct: 278 GKITEAVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 313 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG DT GI T+ Sbjct: 19 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 78 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 D VE +++ L +E AD++L + Sbjct: 79 DGVETRMAEQSLLAIEEADVVLFM 102 >gi|257791089|ref|YP_003181695.1| small GTP-binding protein [Eggerthella lenta DSM 2243] gi|317488189|ref|ZP_07946760.1| ribosome-associated GTPase EngA [Eggerthella sp. 1_3_56FAA] gi|325830789|ref|ZP_08164173.1| ribosome biogenesis GTPase Der [Eggerthella sp. HGA1] gi|257474986|gb|ACV55306.1| small GTP-binding protein [Eggerthella lenta DSM 2243] gi|316912694|gb|EFV34232.1| ribosome-associated GTPase EngA [Eggerthella sp. 1_3_56FAA] gi|325487196|gb|EGC89639.1| ribosome biogenesis GTPase Der [Eggerthella sp. HGA1] Length = 438 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 36/91 (39%), Positives = 53/91 (58%), Gaps = 3/91 (3%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 +G + I+G NAGKSSL N L D +IV+D+ GTTRD + + +G I DTAG+ Sbjct: 177 DGINVAIIGRPNAGKSSLTNKLTANDRSIVSDVAGTTRDAIDTHIVHDGQRYTIVDTAGL 236 Query: 278 R---ETDDIVEKEGIKRTFLEVENADLILLL 305 R + D+ VE G R ++ A++ LL+ Sbjct: 237 RRKSQIDEDVEYYGFVRAMRAIDRANVALLV 267 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+ N +A+ D AIV ++ G TRD + D G K+ DT GI D Sbjct: 6 VAVVGRPNVGKSTFVNRIAQADEAIVHEMRGVTRDRSYHEADWNGVDFKLIDTGGIEMGD 65 Query: 282 DIVEKEGIKRTFLEVEN-ADLILLL 305 D + I+ L N AD+IL L Sbjct: 66 DDAFQGSIRNQALAGANEADVILFL 90 >gi|225181110|ref|ZP_03734557.1| small GTP-binding protein [Dethiobacter alkaliphilus AHT 1] gi|225168307|gb|EEG77111.1| small GTP-binding protein [Dethiobacter alkaliphilus AHT 1] Length = 440 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 39/90 (43%), Positives = 55/90 (61%), Gaps = 7/90 (7%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV--LTIDLDLEGYLVKISDTAGIR 278 ++ I+G N GKSSL N L+ + IV+D+PGTTRD L I+ D YL DTAGIR Sbjct: 175 RVAIIGRPNVGKSSLTNKLSGTERVIVSDMPGTTRDAIDLLIERDNRKYL--FVDTAGIR 232 Query: 279 ---ETDDIVEKEGIKRTFLEVENADLILLL 305 + D+ VE + R+ E+AD++L+L Sbjct: 233 RKSKVDEAVEYYSVLRSIRAAESADVVLML 262 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 50/89 (56%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN L ++ +AI G TRD + D G+ + DT G+ + Sbjct: 6 VAIVGRPNVGKSTLFNRLIQRRLAIEEPTAGVTRDRIYGRADWTGHEFWLIDTGGLTFEE 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310 D + +E ++ L +E A++I+ + ++ S Sbjct: 66 DKISREIHRQVKLAMEEANVIIFVVDVRS 94 >gi|261495041|ref|ZP_05991508.1| putative GTP-binding protein [Mannheimia haemolytica serotype A2 str. OVINE] gi|261309283|gb|EEY10519.1| putative GTP-binding protein [Mannheimia haemolytica serotype A2 str. OVINE] Length = 504 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 51/183 (27%), Positives = 87/183 (47%), Gaps = 33/183 (18%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G I DTAG+R+ Sbjct: 217 KIAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGQQYTIIDTAGVRKR 276 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNIDFI----------- 323 + VEK + +T +++A+++LL +E S +++S + FI Sbjct: 277 GKVNLAVEKFSVIKTLQAIQDANVVLLTIDAREGISDQDLSL---LGFILNAGRSLVIVV 333 Query: 324 --FIGTKSDLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLP 370 + G D+ E D H IS+ G G+ L + +K + +K Sbjct: 334 NKWDGLSQDIKDQVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSVKEAYACATQKTS 393 Query: 371 FSI 373 S+ Sbjct: 394 TSM 396 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 32/81 (39%), Positives = 49/81 (60%) Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV 284 +G N GKS+LFN L + A+V D PG TRD ++ GY + DT GI T++ V Sbjct: 1 MGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANIAGYDFIVIDTGGIDGTEEGV 60 Query: 285 EKEGIKRTFLEVENADLILLL 305 E++ +++ L +E AD++L L Sbjct: 61 EEKMAEQSLLAIEEADVVLFL 81 >gi|326575993|gb|EGE25916.1| GTP-binding protein EngA [Moraxella catarrhalis CO72] Length = 472 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 36/97 (37%), Positives = 61/97 (62%), Gaps = 5/97 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N L +D +V D+PGTTRD + I + EG + DTAG+R Sbjct: 181 KLAIIGRPNVGKSTLVNRLLGEDRVVVFDMPGTTRDSIYIPFEREGRSYVLIDTAGVRRR 240 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314 D+ VEK + +T +++A++++++ I++K+ I Sbjct: 241 GRIDEKVEKFSVVKTLQAIKDANVVMVV--IDAKEGI 275 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 3/87 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L K A+V D+ G TRD D E + DT GI E D Sbjct: 7 VALIGRPNVGKSTLFNQLTKSRQALVADLAGLTRDRQYGDAHFENKSFIVVDTGGIGEMD 66 Query: 282 D---IVEKEGIKRTFLEVENADLILLL 305 D ++ +++ + AD+++ + Sbjct: 67 DGSGNIDDYMATQSYTAIHEADIVVFV 93 >gi|261493816|ref|ZP_05990330.1| putative GTP-binding protein [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261310519|gb|EEY11708.1| putative GTP-binding protein [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 511 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 51/183 (27%), Positives = 87/183 (47%), Gaps = 33/183 (18%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G I DTAG+R+ Sbjct: 224 KIAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGQQYTIIDTAGVRKR 283 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNIDFI----------- 323 + VEK + +T +++A+++LL +E S +++S + FI Sbjct: 284 GKVNLAVEKFSVIKTLQAIQDANVVLLTIDAREGISDQDLSL---LGFILNAGRSLVIVV 340 Query: 324 --FIGTKSDLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLP 370 + G D+ E D H IS+ G G+ L + +K + +K Sbjct: 341 NKWDGLSQDIKDQVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSVKEAYACATQKTS 400 Query: 371 FSI 373 S+ Sbjct: 401 TSM 403 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 51/84 (60%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++ GY + DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANIAGYDFIVIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE++ +++ L +E AD++L L Sbjct: 65 EGVEEKMAEQSLLAIEEADVVLFL 88 >gi|163802477|ref|ZP_02196370.1| GTP-binding protein EngA [Vibrio sp. AND4] gi|159173778|gb|EDP58593.1| GTP-binding protein EngA [Vibrio sp. AND4] Length = 498 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 36/98 (36%), Positives = 63/98 (64%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G + DTAG+R Sbjct: 211 KLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRRR 270 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 ++ VEK + +T VE+A+++LL+ I++++ IS Sbjct: 271 GRINETVEKFSVVKTLKAVEDANVVLLV--IDARENIS 306 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280 + ++G N GKS+LFN L + A+V D PG TRD L E + + DT GI T Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQASLGEEHEFIVIDTGGIDGT 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 ++ VE + +++ ++ AD++L L Sbjct: 65 EEGVETKMAEQSLAAIDEADVVLFL 89 >gi|113868334|ref|YP_726823.1| GTP-binding protein EngA [Ralstonia eutropha H16] gi|113527110|emb|CAJ93455.1| GTP-binding protein [Ralstonia eutropha H16] Length = 456 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 38/111 (34%), Positives = 67/111 (60%), Gaps = 8/111 (7%) Query: 211 KLGEIIRN---GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267 +LGE I + G KI I+G N GKS+L N L ++ I D+PGTTRD + ++ + G Sbjct: 178 ELGEEIPDEGKGVKIAIVGRPNVGKSTLVNTLIGEERVIAFDMPGTTRDAIYVEFERGGK 237 Query: 268 LVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + DTAG+R + +EK + +T + +A++++LL ++++++IS Sbjct: 238 PYTLIDTAGLRRRGKVFEAIEKFSVVKTLQSIADANVVILL--LDAQQDIS 286 Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust. Identities = 43/176 (24%), Positives = 75/176 (42%), Gaps = 28/176 (15%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN + + A+V D+PG TRD + + DT G Sbjct: 14 IALVGRPNVGKSTLFNRMTRSRDALVADLPGLTRDRHYGEGRIGERPFIAIDTGGF---- 69 Query: 282 DIVEKEGI-----KRTFLEVENADLILL------------------LKEINSKKEISFPK 318 + V KEGI K+T V AD+++ L++ + ++ K Sbjct: 70 EPVVKEGIVAEMAKQTKQAVVEADVVIFIVDGRLGLAPQDRAIADYLRKTGRRIMLAVNK 129 Query: 319 NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374 + +D Y + + IS+ G+G+ EL+++ + + +L IP Sbjct: 130 AEGMKYTSVAADFYELGMGD-PYAISAAHGDGVSELVDEAIELAVQERPELGEEIP 184 >gi|254468967|ref|ZP_05082373.1| GTP-binding protein EngA [beta proteobacterium KB13] gi|207087777|gb|EDZ65060.1| GTP-binding protein EngA [beta proteobacterium KB13] Length = 466 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 37/93 (39%), Positives = 55/93 (59%), Gaps = 3/93 (3%) Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 I + +KI ILG NAGKS+L N+L D I +D+PGTT D + I+++L + DTA Sbjct: 172 IDDNFKIAILGKPNAGKSTLINSLIGSDRLIASDLPGTTIDSIEIEIELNSDKYILVDTA 231 Query: 276 GIRETDDIVEKE---GIKRTFLEVENADLILLL 305 GIR + KE + ++ +NA+ ILL+ Sbjct: 232 GIRRKGKVTVKEEKFALLKSLESAKNANFILLI 264 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 2/91 (2%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--E 279 + I+G N GKSSLFN L K AIV++ G TRD ++ +I D+ G+ + Sbjct: 4 VAIVGRPNVGKSSLFNKLTKSKKAIVSEFEGLTRDRQVGKSVIDNLAYEIIDSGGLNFSK 63 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINS 310 ++ ++ + + +T L + ADLIL + + S Sbjct: 64 NNNALDTQILNQTNLAADEADLILFVVDYKS 94 >gi|163784433|ref|ZP_02179314.1| GTP-binding protein [Hydrogenivirga sp. 128-5-R1-1] gi|159880300|gb|EDP73923.1| GTP-binding protein [Hydrogenivirga sp. 128-5-R1-1] Length = 451 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 33/86 (38%), Positives = 55/86 (63%), Gaps = 3/86 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G NAGKSS+ NA+ ++ A+V++IPGTTRDV+ + +E + DTAG+R+ Sbjct: 186 KVAIIGKPNAGKSSILNAITGEERALVSNIPGTTRDVVDTMVKIENKTYRFLDTAGLRKK 245 Query: 281 DDI---VEKEGIKRTFLEVENADLIL 303 + VE + RT ++ AD+++ Sbjct: 246 SKVDYGVEFFSVGRTLDAIKKADVVV 271 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/87 (40%), Positives = 49/87 (56%), Gaps = 1/87 (1%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 Y++ I+G N GKSSLFN + + AIV DIPG TRD L + ++ DT G E Sbjct: 2 YRVAIVGRPNVGKSSLFNRIIGQKKAIVEDIPGITRDRLIQTTEWRNIPFELVDTGGYIE 61 Query: 280 TDDIVEKEGIKRTF-LEVENADLILLL 305 TDD I++ E+E+AD +L+ Sbjct: 62 TDDDKFAPFIRKQIEKEMEDADAFILV 88 >gi|94311040|ref|YP_584250.1| GTP-binding protein EngA [Cupriavidus metallidurans CH34] gi|123383733|sp|Q1LLJ5|DER_RALME RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|93354892|gb|ABF08981.1| GTP-binding protein [Cupriavidus metallidurans CH34] Length = 447 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 34/102 (33%), Positives = 64/102 (62%), Gaps = 5/102 (4%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 ++G KI I+G N GKS+L N L ++ I D+PGTTRD + ++ + G + DTAG Sbjct: 178 QHGVKIAIVGRPNVGKSTLVNTLIGEERVIAFDMPGTTRDAIYVEFERGGKPYTLIDTAG 237 Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 +R+ + +EK + +T + +A++++LL ++++++IS Sbjct: 238 LRKRGKVFEAIEKFSVVKTLQSIADANVVVLL--LDAQQDIS 277 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 41/159 (25%), Positives = 70/159 (44%), Gaps = 28/159 (17%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN + + A+V D+PG TRD + + + DT G Sbjct: 5 IALVGRPNVGKSTLFNRMTRSRDALVADLPGLTRDRHYGEGRIGDRPFIVIDTGGF---- 60 Query: 282 DIVEKEGI-----KRTFLEVENADLILL------------------LKEINSKKEISFPK 318 + V KEGI K+T V AD+++ L++ + ++ K Sbjct: 61 EPVAKEGIVAEMAKQTRQAVVEADVVIFLVDGRLGLAPQDRVIADYLRKTGRRVMLAINK 120 Query: 319 NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINK 357 + +D Y + + ISS G+G+ EL+++ Sbjct: 121 AEGMKYTSVAADFYELGMGD-PYAISSTHGDGVRELVDE 158 >gi|269962406|ref|ZP_06176756.1| GTP-binding protein [Vibrio harveyi 1DA3] gi|269832902|gb|EEZ87011.1| GTP-binding protein [Vibrio harveyi 1DA3] Length = 498 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 36/98 (36%), Positives = 63/98 (64%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G + DTAG+R Sbjct: 211 KLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRRR 270 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 ++ VEK + +T VE+A+++LL+ I++++ IS Sbjct: 271 GRINETVEKFSVVKTLKAVEDANVVLLV--IDARENIS 306 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280 + ++G N GKS+LFN L + A+V D PG TRD L E + + DT GI T Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQARLGEEHEFIVIDTGGIDGT 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 ++ VE + +++ ++ AD++L L Sbjct: 65 EEGVETKMAQQSLAAIDEADVVLFL 89 >gi|165975864|ref|YP_001651457.1| GTP-binding protein EngA [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|238687527|sp|B0BTQ8|DER_ACTPJ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|165875965|gb|ABY69013.1| conserved putative GTP-binding protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 506 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 51/183 (27%), Positives = 87/183 (47%), Gaps = 33/183 (18%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G I DTAG+R+ Sbjct: 219 KIAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGQQYTIIDTAGVRKR 278 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNIDFI----------- 323 + VEK + +T +++A+++LL +E S +++S + FI Sbjct: 279 GKVNLAVEKFSVIKTLQAIQDANVVLLTIDAREGISDQDLSL---LGFILNAGRSLVIVV 335 Query: 324 --FIGTKSDLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLP 370 + G D+ E D H IS+ G G+ L + +K + +K Sbjct: 336 NKWDGLSQDIKDQVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSVKEAYACATQKTS 395 Query: 371 FSI 373 S+ Sbjct: 396 TSM 398 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 51/84 (60%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++ GY + DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANIAGYNFIVIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE++ +++ L +E AD++L L Sbjct: 65 EGVEEKMAEQSLLAIEEADVVLFL 88 >gi|238763554|ref|ZP_04624515.1| GTP-binding protein engA [Yersinia kristensenii ATCC 33638] gi|238698186|gb|EEP90942.1| GTP-binding protein engA [Yersinia kristensenii ATCC 33638] Length = 494 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 48/155 (30%), Positives = 76/155 (49%), Gaps = 19/155 (12%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L A+V D PG TRD ++EG+ + DT GI T+ Sbjct: 5 IALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGHEFIVIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL---------------KEINSKKEISF--PKNIDFIF 324 D VE + ++ L +E AD++L + + + S+++ +F D I Sbjct: 65 DGVETKMAGQSLLAIEEADIVLFMVDARAGLMPADQGIAQHLRSREKATFLVANKTDGID 124 Query: 325 IGT-KSDLYSTYTEEYDHLISSFTGEGLEELINKI 358 T +D YS E H I++ G G+ +LI + Sbjct: 125 ADTAAADFYSLGLGEV-HAIAASHGRGVTQLIEDV 158 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 60/98 (61%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + +D +V D+PGTTRD + I + + + DTAG+R+ Sbjct: 208 KLAIVGRPNVGKSTLTNRILGEDRVVVYDLPGTTRDSIYIPMTRDEREYILIDTAGVRKR 267 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 I VEK + +T +E+++++LL+ I+++ IS Sbjct: 268 GKITETVEKFSVIKTLQAIEDSNVVLLV--IDARDGIS 303 >gi|257063685|ref|YP_003143357.1| small GTP-binding protein domain/GTP-binding conserved hypothetical protein [Slackia heliotrinireducens DSM 20476] gi|256791338|gb|ACV22008.1| small GTP-binding protein domain/GTP-binding conserved hypothetical protein [Slackia heliotrinireducens DSM 20476] Length = 438 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 35/92 (38%), Positives = 55/92 (59%), Gaps = 3/92 (3%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G + I+G NAGKSSL N L +D +IV+D+ GTTRD + ++ +G + I DTAG+R Sbjct: 178 GINVAIIGRPNAGKSSLTNRLIGRDRSIVSDVAGTTRDAIDTRVEHDGKVYTIVDTAGLR 237 Query: 279 ---ETDDIVEKEGIKRTFLEVENADLILLLKE 307 + D+ VE R ++ AD+ +L+ + Sbjct: 238 RKSQIDEDVEYYSYVRAMRAIDRADVAILVMD 269 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 47/170 (27%), Positives = 80/170 (47%), Gaps = 28/170 (16%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+ N +A D AIV ++ G TRD + D G + DT GI D Sbjct: 6 VAVVGRPNVGKSTFVNRIAHADDAIVHEMRGVTRDRSYHNADWRGVHFTLIDTGGIEMGD 65 Query: 282 DIVEKEGIK-RTFLEVENADLILLLKEINSKKEISFP--------KNID---FIFIGTKS 329 D + I+ + F+ + AD+IL + ++ K I+ + +D F+ + K Sbjct: 66 DDAFQSSIRDQAFMAADEADVILFM--VDGKTGITADDEEVARVLRKVDTPVFLLV-NKM 122 Query: 330 DLYSTYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLP 370 D S E ++ ISS G G +L++++ +IL ++LP Sbjct: 123 DNPSKMEENWEFYSLGLGDPRSISSTHGHGTGDLLDEVVAIL----RELP 168 >gi|291522204|emb|CBK80497.1| ribosome-associated GTPase EngA [Coprococcus catus GD/7] Length = 441 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 54/88 (61%), Gaps = 1/88 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFNALA + ++IV D PG TRD + D++ + DT GI T Sbjct: 6 VAIIGRPNVGKSTLFNALAGQQISIVKDTPGVTRDRIYADVNWLNTQFTMIDTGGIEPST 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308 +D++ K ++ + +E AD+I+ L ++ Sbjct: 66 NDLILKSMREQAEIAIETADVIIFLTDV 93 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 43/131 (32%), Positives = 69/131 (52%), Gaps = 8/131 (6%) Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247 +SK L D+L +++ H G E + I+G N GKSSL N L ++ IV Sbjct: 149 NSKLGLGDML---DEVIKHFKPGTAEEEADERPHVAIVGKPNVGKSSLINKLTGENRVIV 205 Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILL 304 ++I GTTRD + + G DTAG+R I +E+ I RT VE A++++L Sbjct: 206 SNIAGTTRDAIDTVIKHNGKEYVFIDTAGLRRKSKIKEDIERYSIIRTVSAVERANVVVL 265 Query: 305 LKEINSKKEIS 315 + I++K+ ++ Sbjct: 266 M--IDAKEGVT 274 >gi|168186800|ref|ZP_02621435.1| GTP-binding protein EngA [Clostridium botulinum C str. Eklund] gi|169295122|gb|EDS77255.1| GTP-binding protein EngA [Clostridium botulinum C str. Eklund] Length = 438 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 35/85 (41%), Positives = 51/85 (60%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFN LA K +AIV D+PG TRD + + + I DT GI E Sbjct: 6 VAIVGRPNVGKSTLFNKLAGKRIAIVDDMPGVTRDRIYAEAEWLNNNFTIIDTGGIEPEN 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 DDI+ + ++ L +E AD++L + Sbjct: 66 DDIIVAQMRRQAQLAIEMADVVLFI 90 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I ++G N GKSSL N + ++ IV++IPGTTRD + ++ E + DTAG+R Sbjct: 178 RIAMIGRPNVGKSSLINRILGEEKHIVSNIPGTTRDAVDSYIETEEGKFVLIDTAGLRRK 237 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 I VE+ RT +ENAD+ +L+ Sbjct: 238 SKIKEQVERYSAVRTLASIENADVCILM 265 >gi|253999419|ref|YP_003051482.1| GTP-binding protein EngA [Methylovorus sp. SIP3-4] gi|313201441|ref|YP_004040099.1| small GTP-binding protein [Methylovorus sp. MP688] gi|253986098|gb|ACT50955.1| small GTP-binding protein [Methylovorus sp. SIP3-4] gi|312440757|gb|ADQ84863.1| small GTP-binding protein [Methylovorus sp. MP688] Length = 523 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 53/88 (60%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L NAL ++ I D PGTTRD + IDL+ G I DTAG+R+ Sbjct: 179 KVAIVGRPNVGKSTLVNALLGQERVIAFDQPGTTRDSIHIDLERNGKHYTIIDTAGVRKR 238 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +EK + +T +E A++ +L+ Sbjct: 239 GKVFEAIEKFSVIKTIQAIEEANVAILV 266 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 7/88 (7%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV---LTIDLDLEGYLVKISDTAGIR 278 IV++G N GKS+LFN L K A+V D+PG TRD I D + +LV DT G Sbjct: 5 IVLVGRPNVGKSTLFNRLTKSRDALVADLPGLTRDRHYGRGIGGD-KPFLV--VDTGGFE 61 Query: 279 E-TDDIVEKEGIKRTFLEVENADLILLL 305 D + KE K+T L ++ AD+++ + Sbjct: 62 PLVDSGILKEMAKQTLLAIDEADVVIFM 89 >gi|32034718|ref|ZP_00134849.1| COG1160: Predicted GTPases [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207887|ref|YP_001053112.1| GTP-binding protein EngA [Actinobacillus pleuropneumoniae L20] gi|307260878|ref|ZP_07542564.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|166224300|sp|A3MZC1|DER_ACTP2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|126096679|gb|ABN73507.1| GTP-binding protein EngA [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|306869445|gb|EFN01236.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 506 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 51/183 (27%), Positives = 87/183 (47%), Gaps = 33/183 (18%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G I DTAG+R+ Sbjct: 219 KIAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGQQYTIIDTAGVRKR 278 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNIDFI----------- 323 + VEK + +T +++A+++LL +E S +++S + FI Sbjct: 279 GKVNLAVEKFSVIKTLQAIQDANVVLLTIDAREGISDQDLSL---LGFILNAGRSLVIVV 335 Query: 324 --FIGTKSDLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLP 370 + G D+ E D H IS+ G G+ L + +K + +K Sbjct: 336 NKWDGLSQDIKDQVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSVKEAYACATQKTS 395 Query: 371 FSI 373 S+ Sbjct: 396 TSM 398 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 51/84 (60%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++ GY + DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANIAGYDFIVIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE++ +++ L +E AD++L L Sbjct: 65 EGVEEKMAEQSLLAIEEADVVLFL 88 >gi|153833535|ref|ZP_01986202.1| GTP-binding protein EngA [Vibrio harveyi HY01] gi|148870186|gb|EDL69127.1| GTP-binding protein EngA [Vibrio harveyi HY01] Length = 498 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 36/98 (36%), Positives = 63/98 (64%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G + DTAG+R Sbjct: 211 KLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRRR 270 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 ++ VEK + +T VE+A+++LL+ I++++ IS Sbjct: 271 GRINETVEKFSVVKTLKAVEDANVVLLV--IDARENIS 306 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280 + ++G N GKS+LFN L + A+V D PG TRD L E + + DT GI T Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQARLGEEHEFIVIDTGGIDGT 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 ++ VE + +++ ++ AD++L L Sbjct: 65 EEGVETKMAEQSLAAIDEADVVLFL 89 >gi|118443488|ref|YP_878327.1| GTP-binding protein EngA [Clostridium novyi NT] gi|166224330|sp|A0Q125|DER_CLONN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|118133944|gb|ABK60988.1| GTP-binding protein engA [Clostridium novyi NT] Length = 438 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 35/85 (41%), Positives = 51/85 (60%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFN LA K +AIV D+PG TRD + + + I DT GI E Sbjct: 6 VAIVGRPNVGKSTLFNKLAGKRIAIVDDMPGVTRDRIYAEAEWLNNNFTIIDTGGIEPEN 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 DDI+ + ++ L +E AD++L + Sbjct: 66 DDIIVAQMRRQAQLAIEMADVVLFI 90 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I ++G N GKSSL N + ++ IV++IPGTTRD + ++ E + DTAG+R Sbjct: 178 RIAMIGRPNVGKSSLINKILGEEKHIVSNIPGTTRDAVDSYVETEEGKFVLIDTAGLRRK 237 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 I VE+ RT +ENAD+ +L+ Sbjct: 238 SKIKEQVERYSAVRTLASIENADVCILM 265 >gi|51597153|ref|YP_071344.1| GTP-binding protein EngA [Yersinia pseudotuberculosis IP 32953] gi|186896248|ref|YP_001873360.1| GTP-binding protein EngA [Yersinia pseudotuberculosis PB1/+] gi|81825749|sp|Q668A3|DER_YERPS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|238691441|sp|B2K9P6|DER_YERPB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|51590435|emb|CAH22075.1| putative GTP-binding protein [Yersinia pseudotuberculosis IP 32953] gi|186699274|gb|ACC89903.1| small GTP-binding protein [Yersinia pseudotuberculosis PB1/+] Length = 495 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 48/155 (30%), Positives = 76/155 (49%), Gaps = 19/155 (12%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L A+V D PG TRD ++EG+ + DT GI T+ Sbjct: 5 IALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGHEFIVVDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL---------------KEINSKKEISF--PKNIDFIF 324 D VE + ++ L +E AD++L + + + S+++ +F D I Sbjct: 65 DGVETKMAGQSLLAIEEADIVLFMVDARAGLMPADQGIAQHLRSREKATFLVANKTDGID 124 Query: 325 IGTKS-DLYSTYTEEYDHLISSFTGEGLEELINKI 358 T + D YS E H I++ G G+ +LI + Sbjct: 125 PDTATADFYSLGLGEV-HAIAASHGRGVTQLIEDV 158 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 60/98 (61%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + +D +V D+PGTTRD + I + + + DTAG+R+ Sbjct: 209 KLAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMTRDDREYILIDTAGVRKR 268 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 I VEK + +T +E+++++LL+ I+++ IS Sbjct: 269 GKITETVEKFSVIKTLQAIEDSNVVLLV--IDARDGIS 304 >gi|303249765|ref|ZP_07335969.1| GTP-binding protein EngA [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307251953|ref|ZP_07533854.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307256448|ref|ZP_07538230.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|302651332|gb|EFL81484.1| GTP-binding protein EngA [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860645|gb|EFM92657.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306865078|gb|EFM96979.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 506 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 51/183 (27%), Positives = 87/183 (47%), Gaps = 33/183 (18%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G I DTAG+R+ Sbjct: 219 KIAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGQQYTIIDTAGVRKR 278 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNIDFI----------- 323 + VEK + +T +++A+++LL +E S +++S + FI Sbjct: 279 GKVNLAVEKFSVIKTLQAIQDANVVLLTIDAREGISDQDLSL---LGFILNAGRSLVIVV 335 Query: 324 --FIGTKSDLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLP 370 + G D+ E D H IS+ G G+ L + +K + +K Sbjct: 336 NKWDGLSQDIKDQVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSVKEAYACATQKTS 395 Query: 371 FSI 373 S+ Sbjct: 396 TSM 398 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 51/84 (60%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++ GY + DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANIAGYDFIVIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE++ +++ L +E AD++L L Sbjct: 65 EGVEEKMAEQSLLAIEEADVVLFL 88 >gi|220904769|ref|YP_002480081.1| small GTP-binding protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869068|gb|ACL49403.1| small GTP-binding protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 408 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 50/149 (33%), Positives = 82/149 (55%), Gaps = 22/149 (14%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGIRE 279 I +LG N GKSSL NAL +DVAIV+ PGTT D + T+++ G +V + DTAG Sbjct: 12 IAVLGRCNVGKSSLLNALCGQDVAIVSATPGTTADPVEKTLEMAPLGPVVFL-DTAG--- 67 Query: 280 TDDIVEKEGIK--RTFLEVENADLILLLKEINS----KKEISF---PKNIDFIFIGTKSD 330 TDD E G++ R+ + ADL LL+ + S +++++ + I F+ + K+D Sbjct: 68 TDDTGELGGLRAGRSLAAMTRADLALLVTDSPSWGPYERDLAARLKEQEIPFVAVRNKAD 127 Query: 331 LYSTYTEEY---DHL----ISSFTGEGLE 352 + D + +S+++G+GL+ Sbjct: 128 QPGSMARPQGLSDEVPFVCVSAYSGQGLD 156 >gi|156973384|ref|YP_001444291.1| GTP-binding protein EngA [Vibrio harveyi ATCC BAA-1116] gi|166225933|sp|A7MZE5|DER_VIBHB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|156524978|gb|ABU70064.1| hypothetical protein VIBHAR_01071 [Vibrio harveyi ATCC BAA-1116] Length = 498 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 36/98 (36%), Positives = 63/98 (64%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G + DTAG+R Sbjct: 211 KLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRRR 270 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 ++ VEK + +T VE+A+++LL+ I++++ IS Sbjct: 271 GRINETVEKFSVVKTLKAVEDANVVLLV--IDARENIS 306 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280 + ++G N GKS+LFN L + A+V D PG TRD L E + + DT GI T Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQARLGEEHEFIVIDTGGIDGT 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 ++ VE + +++ ++ AD++L L Sbjct: 65 EEGVETKMAEQSLAAIDEADVVLFL 89 >gi|332284650|ref|YP_004416561.1| GTP-binding protein [Pusillimonas sp. T7-7] gi|330428603|gb|AEC19937.1| GTP-binding protein [Pusillimonas sp. T7-7] Length = 478 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 42/144 (29%), Positives = 75/144 (52%), Gaps = 10/144 (6%) Query: 175 DLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSS 234 D +E D ++ VL D D++ + + E + + K+ I+G N GKS+ Sbjct: 173 DAGTDDEPDFMPDDAEPVLAD-----GDLAEQDTNQEPEEPVSHRIKLAIVGRPNVGKST 227 Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKR 291 L N L +D I D+PGTTRD + I+ + G + DTAG+R + +EK + + Sbjct: 228 LINTLLGEDRVIAFDMPGTTRDAIEIEFERNGVSYTLIDTAGLRRRGKVFEAIEKFSVIK 287 Query: 292 TFLEVENADLILLLKEINSKKEIS 315 T +E ++++L+ ++++ EIS Sbjct: 288 TLQAIEACNVVVLM--LDAQTEIS 309 Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust. Identities = 44/170 (25%), Positives = 77/170 (45%), Gaps = 28/170 (16%) Query: 219 GYKIVI--LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 YK V+ +G +N GKS+LFN + + A+V D G TRD + + + DT G Sbjct: 5 AYKPVVALVGRANVGKSTLFNRITRSRAALVADFSGLTRDRHYGEGRVGEHPFIAVDTGG 64 Query: 277 IRETDDIVEKEGI-----KRTFLEVENADLILLLKEINS-----KKEIS--FPKNIDFIF 324 + V K+GI ++T + +D+++ L + + EI+ K+ +F Sbjct: 65 F----EPVAKDGILLEMARQTQQAIAESDVVIFLVDARAGVNAHDHEIARLLRKSGQRVF 120 Query: 325 IGTKSD---LYSTYTEEYD-------HLISSFTGEGLEELINKIKSILSN 364 + Y + T E+ H IS+ G+G+ ELI + S + + Sbjct: 121 LAVNKAEGMRYGSATAEFHELGLGEPHAISASHGDGVVELIERALSYMDD 170 >gi|153953981|ref|YP_001394746.1| GTP-binding protein EngA [Clostridium kluyveri DSM 555] gi|219854595|ref|YP_002471717.1| hypothetical protein CKR_1252 [Clostridium kluyveri NBRC 12016] gi|189037142|sp|A5N7W7|DER_CLOK5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|254783148|sp|B9E1C8|DER_CLOK1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|146346862|gb|EDK33398.1| Hypothetical protein CKL_1356 [Clostridium kluyveri DSM 555] gi|219568319|dbj|BAH06303.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 438 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 36/88 (40%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI +G N GKSSL N L ++ IV+DIPGTTRD + L+ + + DTAG+R Sbjct: 178 KIAFIGKPNVGKSSLINKLLGEERVIVSDIPGTTRDAIDSYLETDEGKFLLIDTAGVRRK 237 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +EK + RT+ VE AD+ +L+ Sbjct: 238 SKVKEEIEKYSVIRTYTAVERADVCILM 265 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 50/85 (58%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFN LA K ++IV D PG TRD + + Y I DT GI E Sbjct: 6 VAIVGRPNVGKSTLFNKLAGKRISIVEDTPGVTRDRVYAQAEWLNYNFTIIDTGGIEPEN 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 +D++ + ++ + +E A++I+ + Sbjct: 66 NDVIISKMRRQAQVAIETANVIIFI 90 >gi|297538116|ref|YP_003673885.1| ribosome-associated GTPase EngA [Methylotenera sp. 301] gi|297257463|gb|ADI29308.1| ribosome-associated GTPase EngA [Methylotenera sp. 301] Length = 484 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 55/88 (62%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L NAL ++ I D PGTTRD ++IDL+ G + DTAG+R+ Sbjct: 181 KVAIVGRPNVGKSTLVNALLGEERVIAFDEPGTTRDSISIDLEKNGKHYTLIDTAGVRKR 240 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +EK + +T +E A++++L+ Sbjct: 241 GRVLEAIEKFSVIKTIQSIEEANVVILV 268 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 48/88 (54%), Gaps = 7/88 (7%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV---LTIDLDLEGYLVKISDTAGIR 278 +V++G N GKS+LFN L K A+V D+PG TRD I + YLV DT G Sbjct: 5 VVLVGRPNVGKSTLFNRLTKSRDALVADLPGLTRDRHYGRGIGAS-QPYLV--VDTGGFE 61 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305 TD + K +T L ++ AD+I+ L Sbjct: 62 PNTDSGILKAMAVQTLLAIDEADVIIFL 89 >gi|291519504|emb|CBK74725.1| ribosome-associated GTPase EngA [Butyrivibrio fibrisolvens 16/4] Length = 441 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 55/88 (62%), Gaps = 1/88 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFNALA + ++IV D PG TRD + D+ Y + DT GI +T Sbjct: 6 VAIVGRPNVGKSTLFNALAGERISIVKDTPGVTRDRIYADVSWLNYDFTMIDTGGIEPDT 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308 +DI+ + ++ + ++ AD+I+ L ++ Sbjct: 66 NDIILSQMREQAQIAIDTADVIIFLVDV 93 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI ++G N GKSSL N L ++ IV+DI GTTRD + + DTAG+R Sbjct: 179 KIAVIGKPNVGKSSLINKLCGEERVIVSDIAGTTRDAVDTRVRYNHKDYIFIDTAGLRRK 238 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 I +E+ I R VE AD+++++ Sbjct: 239 SKIKEDLERYSIVRAVASVEKADVVIIM 266 >gi|212702039|ref|ZP_03310167.1| hypothetical protein DESPIG_00041 [Desulfovibrio piger ATCC 29098] gi|212674554|gb|EEB35037.1| hypothetical protein DESPIG_00041 [Desulfovibrio piger ATCC 29098] Length = 382 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 35/87 (40%), Positives = 51/87 (58%), Gaps = 3/87 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 ++ +LG NAGKSS+ NALA ++ IV+D+ GTTRD + + + +G DTAG+R Sbjct: 121 RLAMLGRPNAGKSSMINALAGEERMIVSDVAGTTRDSVDVRFERDGQDYVFVDTAGVRRR 180 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILL 304 + DIVEK + AD+ LL Sbjct: 181 TKITDIVEKYSVNAALKSTTKADVTLL 207 >gi|251788752|ref|YP_003003473.1| GTP-binding protein EngA [Dickeya zeae Ech1591] gi|247537373|gb|ACT05994.1| small GTP-binding protein [Dickeya zeae Ech1591] Length = 497 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 52/170 (30%), Positives = 83/170 (48%), Gaps = 28/170 (16%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG I DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGNEFIIIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL---------------KEINSKKEISF--PKNIDFIF 324 D VE +++ L +E AD++L L + + ++++ +F ID I Sbjct: 65 DGVETRMAEQSLLAIEEADIVLFLVDARDGLMPADHAIAQHLRTREKDTFLVANKIDGID 124 Query: 325 IGT-KSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373 I T +D YS E + I++ G G+ L+ K+ LPF++ Sbjct: 125 IDTGTADFYSLGLGEV-YPIAASHGRGVTALLEKV---------LLPFAV 164 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/98 (36%), Positives = 63/98 (64%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G + DTAG+R+ Sbjct: 211 KLAIVGRPNVGKSTLTNRILGEERVVVFDMPGTTRDSIYIPMERDGRDYVLIDTAGVRKR 270 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D VEK + +T +E+A+++LL+ I++++ IS Sbjct: 271 GKITDAVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 306 >gi|238897953|ref|YP_002923633.1| putative GTP-binding protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|259645880|sp|C4K4J2|DER_HAMD5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|229465711|gb|ACQ67485.1| putative GTP-binding protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 496 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 78/166 (46%), Gaps = 27/166 (16%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + +D +V DIPGTTRD + I L DTAG+R++ Sbjct: 211 KLAIVGRPNVGKSTLVNHILAQDRMLVYDIPGTTRDSIYIPLIRNNREYIFIDTAGVRKS 270 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPKNI-----DFIFIGTKS 329 I VE+ + +T +ENA+++LL+ + N S +++S I + K Sbjct: 271 AKIKEKVERFSVIKTLKAIENANVVLLVIDANEGVSDQDLSLLSFILNSGRSLVITVNKW 330 Query: 330 DLYSTYTEEY----------------DHLISSFTGEGLEELINKIK 359 D S+ + H IS+ G G+E L IK Sbjct: 331 DAISSEKRKQIKNSLDLRLGFMDFARTHFISALHGSGVENLFKSIK 376 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 2/86 (2%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+ FN L + A+V D PG TRD ++E + I DT GI + Sbjct: 5 IALIGRPNVGKSTFFNRLTQTANALVADFPGLTRDRQYGHAEIENHKFIIIDTGGINGIE 64 Query: 282 DI--VEKEGIKRTFLEVENADLILLL 305 I ++K ++FL +E AD++L + Sbjct: 65 GIENIQKHMTHQSFLAIEEADVVLFI 90 >gi|78045106|ref|YP_360738.1| GTP-binding protein EngA [Carboxydothermus hydrogenoformans Z-2901] gi|123575819|sp|Q3AAU6|DER_CARHZ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|77997221|gb|ABB16120.1| GTP-binding protein [Carboxydothermus hydrogenoformans Z-2901] Length = 440 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI ++G N GKSSL NAL ++ +V+DIPGTTRD + + +G + DTAG+R Sbjct: 178 KIAVVGRPNVGKSSLVNALLGEERVVVSDIPGTTRDAIDTPMWYQGKPYLLIDTAGMRRK 237 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 I +E+ + R+ + AD+ LL+ Sbjct: 238 SRIEEDLERYSVNRSIKAIRRADVALLV 265 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 50/84 (59%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN + + +AIV D PG TRD L + + +G + + DT G+ ++ Sbjct: 6 VAIVGRPNVGKSTLFNRIIGERIAIVEDTPGVTRDRLYSEAEWQGKVFDLIDTGGLEFSE 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 D++ + ++ + ADLIL + Sbjct: 66 DLITTKVREQIEKAINEADLILFV 89 >gi|311278558|ref|YP_003940789.1| ribosome-associated GTPase EngA [Enterobacter cloacae SCF1] gi|308747753|gb|ADO47505.1| ribosome-associated GTPase EngA [Enterobacter cloacae SCF1] Length = 492 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 36/98 (36%), Positives = 63/98 (64%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + +D +V D+PGTTRD + I ++ + + DTAG+R+ Sbjct: 206 KLAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRKR 265 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D+VEK + +T +E+A+++LL+ I++++ IS Sbjct: 266 GKITDVVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 301 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE +++ L +E AD++L + Sbjct: 65 EGVETRMAEQSLLAIEEADVVLFM 88 >gi|221632763|ref|YP_002521985.1| GTP-binding protein EngA [Thermomicrobium roseum DSM 5159] gi|254783175|sp|B9KZ43|DER_THERP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|221155859|gb|ACM04986.1| ribosome-associated GTPase EngA [Thermomicrobium roseum DSM 5159] Length = 460 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI I+G N GKS+L NA+ + IV+ IPGTTRD + +L +G + + DTAGIR Sbjct: 185 KIAIVGRPNVGKSALLNAILGQPRQIVSPIPGTTRDAVDTELVWKGQPIVLIDTAGIRRP 244 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 I +E+ I R +E +D+ +L+ Sbjct: 245 GRIERGIERYSILRAERAIERSDVAILV 272 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 35/57 (61%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 ++ I+G N GKS+LFN L ++ AIV ++PGTTRD + ++ + DT G+ Sbjct: 5 QVAIVGRPNVGKSTLFNRLLRQRRAIVEEVPGTTRDRIYGIVEWNDLRFGLFDTGGL 61 >gi|15644195|ref|NP_229245.1| GTP-binding protein EngA [Thermotoga maritima MSB8] gi|8134441|sp|Q9X1F8|DER_THEMA RecName: Full=GTPase Der; Short=TmDer; AltName: Full=GTP-binding protein EngA gi|4982010|gb|AAD36514.1|AE001796_6 conserved hypothetical protein [Thermotoga maritima MSB8] Length = 439 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 4/94 (4%) Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 I + K+ I+G N GKS+LFNA+ K+ A+V+ IPGTTRD + ++ ++G DTA Sbjct: 177 ITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTA 236 Query: 276 GIRETDDI----VEKEGIKRTFLEVENADLILLL 305 G+R + VEK R +E AD+++++ Sbjct: 237 GLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIV 270 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/95 (35%), Positives = 55/95 (57%), Gaps = 3/95 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET- 280 ++I+G N GKS+LFN L KK AIV D G TRD + ++ G K+ DT G+ + Sbjct: 4 VLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNP 63 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 DI+ ++ + T + ADL+L + ++ K+ I+ Sbjct: 64 QDIISQKMKEVTLNMIREADLVLFV--VDGKRGIT 96 >gi|323435972|ref|ZP_01049346.2| GTP-binding protein EngA [Dokdonia donghaensis MED134] gi|321496287|gb|EAQ39318.2| GTP-binding protein EngA [Dokdonia donghaensis MED134] Length = 450 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G NAGKSS NAL ++ IVTDI GTTRD + + G+ + DTAGIR Sbjct: 192 RFAVVGRPNAGKSSFINALIGEERYIVTDIAGTTRDAMDTKYNRYGFEFNLVDTAGIRRK 251 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E + R+ +E+AD++LL+ Sbjct: 252 AKVKEDLEFYSVMRSVRAIEHADVVLLV 279 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 1/88 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 + I+G N GKS+ FN L ++ AIV + G TRD D G + DT G + + Sbjct: 20 VAIVGRPNVGKSTFFNRLVQRREAIVDAVSGVTRDRHYGKTDWNGREFTVIDTGGYVVGS 79 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308 DDI E E K+ L ++ AD I+ + ++ Sbjct: 80 DDIFEAEIDKQVELAIDEADAIIFMVDV 107 >gi|91775967|ref|YP_545723.1| small GTP-binding protein domain-containing protein [Methylobacillus flagellatus KT] gi|91709954|gb|ABE49882.1| Small GTP-binding protein domain [Methylobacillus flagellatus KT] Length = 499 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L NAL ++ I D PGTTRD + +DL+ G I DTAG+R Sbjct: 180 KVAIVGRPNVGKSTLVNALLGEERVIAFDQPGTTRDSIYLDLERNGKRYTIIDTAGVRRR 239 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + VEK + +T +E A++ +L+ Sbjct: 240 GKVFEAVEKFSVIKTMQAIEEANVAILV 267 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 34/87 (39%), Positives = 49/87 (56%), Gaps = 5/87 (5%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID--LDLEGYLVKISDTAGIRE 279 IV++G N GKS+LFN L K A+V D+PG TRD + + YLV DT G Sbjct: 6 IVLVGRPNVGKSTLFNRLTKTRDALVADLPGLTRDRHYGRGVVGSKPYLV--VDTGGFEP 63 Query: 280 -TDDIVEKEGIKRTFLEVENADLILLL 305 D + KE ++T L ++ AD+++ L Sbjct: 64 LVDSGILKEMARQTLLAIDEADVVIFL 90 >gi|320157270|ref|YP_004189649.1| GTP-binding protein EngA [Vibrio vulnificus MO6-24/O] gi|319932582|gb|ADV87446.1| GTP-binding protein EngA [Vibrio vulnificus MO6-24/O] Length = 496 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 36/98 (36%), Positives = 63/98 (64%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G + DTAG+R Sbjct: 209 KLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRRR 268 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + + VEK + +T VE+A+++LL+ I++++ IS Sbjct: 269 GKVHETVEKFSVVKTLKAVEDANVVLLV--IDARENIS 304 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD + + + DT GI ++ Sbjct: 5 VALVGRPNVGKSTLFNRLTRSRDALVADFPGLTRDRKYGQAKVGEHDFIVIDTGGIDGSE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE + +++ + AD++L + Sbjct: 65 EGVETKMAEQSLAAIREADVVLFM 88 >gi|46447114|ref|YP_008479.1| hypothetical protein pc1480 [Candidatus Protochlamydia amoebophila UWE25] gi|81697623|sp|Q6MB45|DER_PARUW RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|46400755|emb|CAF24204.1| conserved hypothetical protein [Candidatus Protochlamydia amoebophila UWE25] Length = 487 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 37/92 (40%), Positives = 53/92 (57%), Gaps = 3/92 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G +N GKSSL N L +D IV+ IPGTTRD + I + + DTAGIR Sbjct: 179 KVAIVGRANVGKSSLVNYLLDEDRCIVSPIPGTTRDSVDISFTHKDECYTLIDTAGIRRK 238 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEIN 309 ++V+K RT +E ADL +L+ ++ Sbjct: 239 RAEHEVVDKFAAIRTERAIERADLCVLMLDVQ 270 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+LFN + K+ +AIV + G TRD L + +L G ++ DT GI Sbjct: 6 KLAIVGRPNVGKSALFNRICKQKIAIVDEAEGITRDRLYAEGELFGLHFQVIDTGGINAR 65 Query: 281 DDIVEKEGIKRTF-LEVENADLIL 303 V E IKR + +E AD I+ Sbjct: 66 SKEVFNEEIKRQAEIAIEEADTIV 89 >gi|123441422|ref|YP_001005409.1| GTP-binding protein EngA [Yersinia enterocolitica subsp. enterocolitica 8081] gi|166225934|sp|A1JKS6|DER_YERE8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|122088383|emb|CAL11174.1| putative GTP-binding protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 494 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 48/155 (30%), Positives = 76/155 (49%), Gaps = 19/155 (12%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L A+V D PG TRD ++EG+ + DT GI T+ Sbjct: 5 IALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGHEFIVIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL---------------KEINSKKEISF--PKNIDFIF 324 D VE + ++ L +E AD++L + + + S+++ +F D I Sbjct: 65 DGVETKMAGQSLLAIEEADIVLFMVDARAGLMPADQGIAQHLRSREKATFLVANKTDGID 124 Query: 325 IGTKS-DLYSTYTEEYDHLISSFTGEGLEELINKI 358 T + D YS E H I++ G G+ +LI + Sbjct: 125 PDTATADFYSLGLGEV-HAIAASHGRGVTQLIEDV 158 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 60/98 (61%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + +D +V D+PGTTRD + I + + + DTAG+R+ Sbjct: 208 KLAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMTRDEREYILIDTAGVRKR 267 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 I VEK + +T +E+++++LL+ I+++ IS Sbjct: 268 GKITEAVEKFSVIKTLQAIEDSNVVLLV--IDARDGIS 303 >gi|37197696|dbj|BAC93534.1| predicted GTP-binding protein [Vibrio vulnificus YJ016] Length = 511 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 36/98 (36%), Positives = 63/98 (64%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G + DTAG+R Sbjct: 224 KLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRRR 283 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + + VEK + +T VE+A+++LL+ I++++ IS Sbjct: 284 GKVHETVEKFSVVKTLKAVEDANVVLLV--IDARENIS 319 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD + + + DT GI ++ Sbjct: 20 VALVGRPNVGKSTLFNRLTRSRDALVADFPGLTRDRKYGQAKVGEHDFIVIDTGGIDGSE 79 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE + +++ + AD++L + Sbjct: 80 EGVETKMAEQSLAAIREADVVLFM 103 >gi|148270478|ref|YP_001244938.1| GTP-binding protein EngA [Thermotoga petrophila RKU-1] gi|166225931|sp|A5IMD9|DER_THEP1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|147736022|gb|ABQ47362.1| small GTP-binding protein [Thermotoga petrophila RKU-1] Length = 439 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 4/94 (4%) Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 I + K+ I+G N GKS+LFNA+ K+ A+V+ IPGTTRD + ++ ++G DTA Sbjct: 177 ITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDEEVFIDGRKYVFVDTA 236 Query: 276 GIRETDDI----VEKEGIKRTFLEVENADLILLL 305 G+R + VEK R +E AD+++++ Sbjct: 237 GLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIV 270 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/126 (30%), Positives = 63/126 (50%), Gaps = 9/126 (7%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET- 280 ++I+G N GKS+LFN L +K AIV D G TRD + ++ G K+ DT G+ + Sbjct: 4 VLIVGKPNVGKSTLFNKLVRKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNP 63 Query: 281 DDIVEKEGIKRTFLEVENADLILLL--------KEINSKKEISFPKNIDFIFIGTKSDLY 332 DI+ ++ + T + ADL+L + KE S + N+D I + K++ Sbjct: 64 QDIISQKMKEVTLNMIREADLVLFVVDGKKGITKEDESLADFLRKSNVDTILVANKTENL 123 Query: 333 STYTEE 338 + E Sbjct: 124 REFERE 129 >gi|161486654|ref|NP_933563.2| GTP-binding protein EngA [Vibrio vulnificus YJ016] gi|41016999|sp|Q7MNE7|DER_VIBVY RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA Length = 496 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 36/98 (36%), Positives = 63/98 (64%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G + DTAG+R Sbjct: 209 KLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRRR 268 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + + VEK + +T VE+A+++LL+ I++++ IS Sbjct: 269 GKVHETVEKFSVVKTLKAVEDANVVLLV--IDARENIS 304 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD + + + DT GI ++ Sbjct: 5 VALVGRPNVGKSTLFNRLTRSRDALVADFPGLTRDRKYGQAKVGEHDFIVIDTGGIDGSE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE + +++ + AD++L + Sbjct: 65 EGVETKMAEQSLAAIREADVVLFM 88 >gi|28373695|pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A Switch Protein Containing Two Gtpase Domains Length = 439 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 4/94 (4%) Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 I + K+ I+G N GKS+LFNA+ K+ A+V+ IPGTTRD + ++ ++G DTA Sbjct: 177 ITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTA 236 Query: 276 GIRETDDI----VEKEGIKRTFLEVENADLILLL 305 G+R + VEK R +E AD+++++ Sbjct: 237 GLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIV 270 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/95 (35%), Positives = 55/95 (57%), Gaps = 3/95 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET- 280 ++I+G N GKS+LFN L KK AIV D G TRD + ++ G K+ DT G+ + Sbjct: 4 VLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNP 63 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 DI+ ++ + T + ADL+L + ++ K+ I+ Sbjct: 64 QDIISQKXKEVTLNXIREADLVLFV--VDGKRGIT 96 >gi|269140141|ref|YP_003296842.1| GTP-binding protein [Edwardsiella tarda EIB202] gi|267985802|gb|ACY85631.1| GTP-binding protein [Edwardsiella tarda EIB202] gi|304559975|gb|ADM42639.1| GTP-binding protein EngA [Edwardsiella tarda FL6-60] Length = 494 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 38/103 (36%), Positives = 63/103 (61%), Gaps = 5/103 (4%) Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 I KI I+G N GKS+L N + +D +V D+PGTTRD + I ++ + + DTA Sbjct: 203 INQPIKIAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMERDEREYVLIDTA 262 Query: 276 GIR---ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 G+R + D VEK + +T +E+A+++LL+ I++++ IS Sbjct: 263 GVRKRGKVTDTVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 303 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 49/84 (58%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++ G+ I DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVNGHEFIIIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE +++ + +E AD++L L Sbjct: 65 NGVETHMAEQSLMAIEEADIVLFL 88 >gi|222100021|ref|YP_002534589.1| GTP-binding protein engA [Thermotoga neapolitana DSM 4359] gi|254783174|sp|B9K8E0|DER_THENN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|221572411|gb|ACM23223.1| GTP-binding protein engA [Thermotoga neapolitana DSM 4359] Length = 439 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 62/194 (31%), Positives = 94/194 (48%), Gaps = 36/194 (18%) Query: 127 EAESLAD----------LISSETEMQRRLSMEGMSGELSSL-YGQWIDKLTHIRSFIEAD 175 E ESLAD L++++TE QRR E + EL L +G I + + + Sbjct: 98 EDESLADFLRKSGVDVILVANKTENQRRFERE-IKPELYRLGFGDPI----PVSAEHSIN 152 Query: 176 LDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 LD E+ +Q K + L K +I+ I KI I+G N GKS+L Sbjct: 153 LDTLMEKIIQKLEEKGL---DLETKPEITEAI-------------KIAIVGRPNVGKSTL 196 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI----VEKEGIKR 291 FNA+ K+ A+V+ IPGTTRD + ++ ++G DTAG+R I VE+ R Sbjct: 197 FNAILNKERALVSPIPGTTRDPVDDEVFIDGKKYIFVDTAGLRRKSRIEPKTVERYSTYR 256 Query: 292 TFLEVENADLILLL 305 +E AD+ +++ Sbjct: 257 VVESIERADVAVIV 270 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET- 280 ++I+G N GKS+LFN L +K AIV D G TRD + ++ G ++ DT G+ + Sbjct: 4 VLIVGKPNVGKSTLFNKLVRKRKAIVEDEEGVTRDPVQDTVEWYGKTFRLVDTCGVFDNP 63 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 D++ K+ + T + ADL+L + Sbjct: 64 QDVISKKMKEVTLNMIREADLVLFV 88 >gi|307243742|ref|ZP_07525882.1| hydrogenase maturation GTP-binding protein HydF [Peptostreptococcus stomatis DSM 17678] gi|306492951|gb|EFM64964.1| hydrogenase maturation GTP-binding protein HydF [Peptostreptococcus stomatis DSM 17678] Length = 399 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 37/89 (41%), Positives = 61/89 (68%), Gaps = 2/89 (2%) Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDT 274 I N IV++G+ N+GKSSLFN + +D++IV+D GTT D + +++L GY V+I DT Sbjct: 6 IANRKTIVLVGNRNSGKSSLFNLILGQDMSIVSDYAGTTTDPVGRNMELIGYGPVRIIDT 65 Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLIL 303 AG+ + D+ + +++T LE+ ADL++ Sbjct: 66 AGLDDLGDLGQMR-VRKTQLEIGEADLVV 93 >gi|254478784|ref|ZP_05092152.1| putative GTPase [Carboxydibrachium pacificum DSM 12653] gi|214035296|gb|EEB76002.1| putative GTPase [Carboxydibrachium pacificum DSM 12653] Length = 439 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI ++G N GKSSL N + ++ IV+DIPGTTRD + +G + DTAGIR Sbjct: 178 KIAVIGRPNVGKSSLVNRILGEERVIVSDIPGTTRDAIDTPFTKDGRNYILIDTAGIRRK 237 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 I +E+ + R +E AD+ LL+ Sbjct: 238 SRISESIERYSVLRALAAIERADICLLM 265 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RET 280 + I+G N GKS+LFN + K+ ++IV DIPG TRD + + + + DT G+ + Sbjct: 6 VAIVGRPNVGKSTLFNRILKRRISIVEDIPGVTRDRIYGNAEWLNRKFILVDTGGLDPDP 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 D++ + + +E ADLIL + Sbjct: 66 KDVIFSKVKLQVEAAIEAADLILFV 90 >gi|20808046|ref|NP_623217.1| GTP-binding protein EngA [Thermoanaerobacter tengcongensis MB4] gi|26006716|sp|Q8R9J1|DER_THETN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|20516626|gb|AAM24821.1| predicted GTPases [Thermoanaerobacter tengcongensis MB4] Length = 439 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI ++G N GKSSL N + ++ IV+DIPGTTRD + +G + DTAGIR Sbjct: 178 KIAVIGRPNVGKSSLVNRILGEERVIVSDIPGTTRDAIDTPFTKDGRNYILIDTAGIRRK 237 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 I +E+ + R +E AD+ LL+ Sbjct: 238 SRISESIERYSVLRALAAIERADICLLM 265 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RET 280 + I+G N GKS+LFN + K+ ++IV DIPG TRD + + + + DT G+ + Sbjct: 6 VAIVGRPNVGKSTLFNRILKRRISIVEDIPGVTRDRIYGNAEWLNRKFILVDTGGLDPDP 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 D++ + + +E ADLIL + Sbjct: 66 KDVIFSKVKLQVEAAIEAADLILFV 90 >gi|323499818|ref|ZP_08104777.1| GTP-binding protein Der [Vibrio sinaloensis DSM 21326] gi|323315059|gb|EGA68111.1| GTP-binding protein Der [Vibrio sinaloensis DSM 21326] Length = 494 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G + DTAG+R Sbjct: 208 KLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRRR 267 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 ++ VEK + +T VE+A++++L+ I++++ IS Sbjct: 268 TRINETVEKFSVVKTLKAVEDANVVMLV--IDARENIS 303 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD L + + DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE + +++ ++ AD++L + Sbjct: 65 EGVETKMAQQSLAAIDEADVVLFM 88 >gi|254514003|ref|ZP_05126064.1| GTP-binding protein EngA [gamma proteobacterium NOR5-3] gi|219676246|gb|EED32611.1| GTP-binding protein EngA [gamma proteobacterium NOR5-3] Length = 474 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 55/92 (59%), Gaps = 3/92 (3%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 + G ++ ++G N GKS+L N + +D +V D PGTTRD + I+ EG + DTAG Sbjct: 175 QGGTRVAVVGRPNVGKSTLVNRILGEDRVVVYDQPGTTRDSVYINFSREGRPYTLIDTAG 234 Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLL 305 +R ++ VEK I +T + +A++++LL Sbjct: 235 VRRRKNVREAVEKFSIIKTLSAISDANVVVLL 266 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 36/157 (22%), Positives = 75/157 (47%), Gaps = 23/157 (14%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L + A+V ++ G TRD + E + DT G+ + Sbjct: 5 IALVGRPNVGKSTLFNQLTRSRDALVANLSGLTRDRKYGEGRSEDRAFIVIDTGGVSGDE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI-FIGTKSDLYSTYTEEYD 340 + ++ +++ L ++ AD++LLL +++K ++ P ++ + ++ KS + + D Sbjct: 65 EGIDAAMAEQSLLAIDEADVVLLL--VDAKDGLN-PVDVQLVQYLRQKSRDFHLVVNKID 121 Query: 341 -------------------HLISSFTGEGLEELINKI 358 H I++ G G+ ++I + Sbjct: 122 GRDPDVAISDFHSLGIASMHAIAASHGRGVRQMIETV 158 >gi|32186993|gb|AAP73740.1| EngA [Escherichia coli] Length = 369 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G + DTAG+R+ Sbjct: 83 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 142 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D VEK + +T +E+A++++L+ I++++ IS Sbjct: 143 GKITDAVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 178 >gi|90417497|ref|ZP_01225420.1| hypothetical protein GB2207_07462 [marine gamma proteobacterium HTCC2207] gi|90330738|gb|EAS46017.1| hypothetical protein GB2207_07462 [marine gamma proteobacterium HTCC2207] Length = 467 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 35/91 (38%), Positives = 56/91 (61%), Gaps = 3/91 (3%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 NG +I ++G N GKS+L N L +D +V D GTTRD + ID + G + DTAGI Sbjct: 174 NGIRIGVVGRPNVGKSTLVNRLLGEDRVVVYDEAGTTRDSVYIDYERHGKKYTLIDTAGI 233 Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLL 305 R+ +I +EK I +T +++A++++L+ Sbjct: 234 RKRKNIKLAIEKFSIVKTLQAIDDANVVVLM 264 Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 48/89 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L + A+V + G TRD D ++ + DT GI + Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVANYSGLTRDRKYGDGEMHDRRFMVIDTGGISGEE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310 + ++ +++ L ++ AD++L + + S Sbjct: 65 EGIDVGMAEQSLLAMDEADIVLFIVDCRS 93 >gi|83945266|ref|ZP_00957615.1| GTP-binding protein EngA [Oceanicaulis alexandrii HTCC2633] gi|83851436|gb|EAP89292.1| GTP-binding protein EngA [Oceanicaulis alexandrii HTCC2633] Length = 459 Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 46/173 (26%), Positives = 85/173 (49%), Gaps = 29/173 (16%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 ++ + G N GKS+L NAL +D I G TRD + ++ + +G V++ DTAG+R Sbjct: 193 RLAVAGRPNVGKSTLINALIGEDRLITGPEAGLTRDAIAVEWEWDGQRVRLHDTAGLRKR 252 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPKNI-----DFIFIGTKS 329 + DD +E+ T ++ A+++LLL + K++++ + + + TK Sbjct: 253 GKVDDRLERMSAADTLRAIKFAEIVLLLVDAERPFEKQDLTIADRVVTEGRGLVVLITKW 312 Query: 330 DL-------YSTYTEEYDHL-----------ISSFTGEGLEELINKIKSILSN 364 DL + EE++ L ISS +G GLE+++ + ++ N Sbjct: 313 DLIEDKQAKLAELREEFERLLPQIKGAPLIPISSISGRGLEKIMPAVSALHKN 365 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 45/84 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN LA K +AIV D PG TRD + +++ DTAG + Sbjct: 8 LAIVGRPNVGKSTLFNRLAGKPLAIVDDRPGVTRDRREARGRIGDLELRLVDTAGYEDDK 67 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 +E +T ++ AD+ + L Sbjct: 68 AGIEARMRAQTEAALDEADVCVFL 91 >gi|284006778|emb|CBA72042.1| GTP-binding protein [Arsenophonus nasoniae] Length = 493 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 36/98 (36%), Positives = 63/98 (64%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G + DTAG+R+ Sbjct: 208 KLAIVGRPNVGKSTLTNRILGEERVVVYDLPGTTRDSIYIPMERDGCEYVLIDTAGVRKR 267 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 I VEK + +T +E+A+++LL+ I++++ IS Sbjct: 268 GKITETVEKFSVIKTLQSIEDANVVLLV--IDARQGIS 303 Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 48/89 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L + A+V D PG TRD + G I DT GI ++ Sbjct: 5 IALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGKAEFAGQEFIIIDTGGIDGSE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310 + +E ++ L +E AD++ + ++ S Sbjct: 65 EGIENHMASQSLLAIEEADIVFFMVDVRS 93 >gi|190149696|ref|YP_001968221.1| GTP-binding protein EngA [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307263004|ref|ZP_07544626.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|238692380|sp|B3H0R7|DER_ACTP7 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|189914827|gb|ACE61079.1| GTP-binding protein EngA [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306871630|gb|EFN03352.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 506 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 36/98 (36%), Positives = 62/98 (63%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G I DTAG+R+ Sbjct: 219 KIAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGQQYTIIDTAGVRKR 278 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + VEK + +T +++A+++LL I++++ IS Sbjct: 279 GKVNLAVEKFSVIKTLQAIQDANVVLL--TIDAREGIS 314 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 51/84 (60%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++ GY + DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANIAGYDFIVIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE++ +++ L +E AD++L L Sbjct: 65 EGVEEKMAEQSLLAIEEADVVLFL 88 >gi|154249913|ref|YP_001410738.1| GTP-binding protein EngA [Fervidobacterium nodosum Rt17-B1] gi|154153849|gb|ABS61081.1| small GTP-binding protein [Fervidobacterium nodosum Rt17-B1] Length = 444 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 35/93 (37%), Positives = 60/93 (64%), Gaps = 7/93 (7%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTA 275 N ++ ++G NAGKSSLFN + K++ A+VT I GTTRD++ + ++ + YL DTA Sbjct: 188 NIIRVTLVGKPNAGKSSLFNMIVKEERALVTPIAGTTRDIIDEIVQINNKNYL--FVDTA 245 Query: 276 GIRET---DDIVEKEGIKRTFLEVENADLILLL 305 G+R+ +D +E+ RT +E +D+++L+ Sbjct: 246 GLRKKSRIEDFIERVSTMRTIDSIERSDVVVLV 278 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 3/86 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-- 279 ++++G SN GKS+LFN L K +IV D GTTRD + + ++ DT GI E Sbjct: 14 VILVGKSNVGKSTLFNKLVGKRKSIVADENGTTRDAVVDRVVWYDKTFQLVDTCGIFEGK 73 Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305 D+I EK + T + ADL++ + Sbjct: 74 NDEIYEKSK-EITIKSLSEADLVIFV 98 >gi|27363891|ref|NP_759419.1| GTP-binding protein Der [Vibrio vulnificus CMCP6] gi|31340067|sp|Q8DF02|DER_VIBVU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|27360008|gb|AAO08946.1| GTP-binding protein EngA [Vibrio vulnificus CMCP6] Length = 496 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 36/98 (36%), Positives = 63/98 (64%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G + DTAG+R Sbjct: 209 KLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRRR 268 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + + VEK + +T VE+A+++LL+ I++++ IS Sbjct: 269 GKVHETVEKFSVVKTLKAVEDANVVLLV--IDARENIS 304 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD + + + DT GI ++ Sbjct: 5 VALVGRPNVGKSTLFNRLTRSRDALVADFPGLTRDRKYGQAKVGEHDFIVIDTGGIDGSE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE + +++ + AD++L + Sbjct: 65 EGVETKMAEQSLAAIREADVVLFM 88 >gi|304311812|ref|YP_003811410.1| GTP-binding protein [gamma proteobacterium HdN1] gi|301797545|emb|CBL45765.1| GTP-binding protein [gamma proteobacterium HdN1] Length = 474 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 32/91 (35%), Positives = 55/91 (60%), Gaps = 3/91 (3%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 G +I ++G N GKS+L N + ++ +V D+PGTTRD + I + G + DTAG+ Sbjct: 176 TGIRIAVVGRPNVGKSTLINRMLGEERVVVFDMPGTTRDSIYIPYERRGQKYTLIDTAGV 235 Query: 278 RE---TDDIVEKEGIKRTFLEVENADLILLL 305 R+ D+ VEK + +T +E+A +++L+ Sbjct: 236 RKRGRVDEAVEKFSVIKTLQAIEDAHVVILV 266 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L K AIV D+PG TRD + + + + DT GI + Sbjct: 5 VALVGRPNVGKSTLFNRLTKTRDAIVADMPGLTRDRKYGEARVGAHAFLVIDTGGITGEE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + ++ +++ L +E ADL+ + Sbjct: 65 EGIDSLMAEQSMLAIEEADLVFFI 88 >gi|134299998|ref|YP_001113494.1| small GTP-binding protein [Desulfotomaculum reducens MI-1] gi|134052698|gb|ABO50669.1| iron-only hydrogenase maturation protein HydF [Desulfotomaculum reducens MI-1] Length = 409 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 40/94 (42%), Positives = 58/94 (61%), Gaps = 2/94 (2%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAG 276 N I I G NAGKSSL NAL +D+A+V++IPGTT D + ++ L V I DTAG Sbjct: 8 NRLHIAIFGRRNAGKSSLINALTSQDIAVVSNIPGTTTDPVYKAMEILPVGPVVIIDTAG 67 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310 I ++ D+ E +KR+ + AD++LL+ + S Sbjct: 68 IDDSGDLGELR-VKRSMDVLNKADMVLLVIDAGS 100 >gi|332162632|ref|YP_004299209.1| GTP-binding protein EngA [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318606735|emb|CBY28233.1| GTP-binding protein EngA [Yersinia enterocolitica subsp. palearctica Y11] gi|325666862|gb|ADZ43506.1| GTP-binding protein EngA [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330859281|emb|CBX69631.1| GTP-binding protein engA [Yersinia enterocolitica W22703] Length = 494 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 48/155 (30%), Positives = 76/155 (49%), Gaps = 19/155 (12%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L A+V D PG TRD ++EG+ + DT GI T+ Sbjct: 5 IALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGHEFIVIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL---------------KEINSKKEISF--PKNIDFIF 324 D VE + ++ L +E AD++L + + + S+++ +F D I Sbjct: 65 DGVETKMAGQSLLAIEEADIVLFMVDARAGLMPADQGIAQHLRSREKATFLVANKTDGID 124 Query: 325 IGTKS-DLYSTYTEEYDHLISSFTGEGLEELINKI 358 T + D YS E H I++ G G+ +LI + Sbjct: 125 PDTATADFYSLGLGEV-HAIAASHGRGVTQLIEDV 158 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 60/98 (61%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + +D +V D+PGTTRD + I + + + DTAG+R+ Sbjct: 208 KLAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMTRDEREYILIDTAGVRKR 267 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 I VEK + +T +E+++++LL+ I+++ IS Sbjct: 268 GKITEAVEKFSVIKTLQAIEDSNVVLLV--IDARDGIS 303 >gi|307152641|ref|YP_003888025.1| ribosome-associated GTPase EngA [Cyanothece sp. PCC 7822] gi|306982869|gb|ADN14750.1| ribosome-associated GTPase EngA [Cyanothece sp. PCC 7822] Length = 452 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 37/97 (38%), Positives = 54/97 (55%), Gaps = 4/97 (4%) Query: 213 GEIIRNG-YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 GE+ N K+ I+G N GKSSL NA + AIV+ I GTTRD + ++ G ++ Sbjct: 169 GEVPENDEIKVAIVGRPNVGKSSLLNAFTGQQRAIVSPISGTTRDTIDTIIERNGQHYRL 228 Query: 272 SDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305 DTAGIR ++ E GI R F + +D++L + Sbjct: 229 IDTAGIRRKKNVEYGAEFFGINRAFKAIRRSDVVLFV 265 Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 31/61 (50%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+L N LA AIV D PG TRD + ++ DT G+ D Sbjct: 6 VAIIGRPNVGKSTLVNRLAGDQQAIVHDEPGITRDRTYRPAFWQDRDFQVVDTGGLVFDD 65 Query: 282 D 282 D Sbjct: 66 D 66 >gi|238788166|ref|ZP_04631961.1| GTP-binding protein engA [Yersinia frederiksenii ATCC 33641] gi|238723753|gb|EEQ15398.1| GTP-binding protein engA [Yersinia frederiksenii ATCC 33641] Length = 494 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 48/155 (30%), Positives = 76/155 (49%), Gaps = 19/155 (12%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L A+V D PG TRD ++EG+ + DT GI T+ Sbjct: 5 IALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGHEFIVIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL---------------KEINSKKEISF--PKNIDFIF 324 D VE + ++ L +E AD++L + + + S+++ +F D I Sbjct: 65 DGVETKMAGQSLLAIEEADIVLFMVDARAGLMPADQGIAQHLRSREKATFLVANKTDGID 124 Query: 325 IGTKS-DLYSTYTEEYDHLISSFTGEGLEELINKI 358 T + D YS E H I++ G G+ +LI + Sbjct: 125 PDTATADFYSLGLGEV-HAIAASHGRGVTQLIEDV 158 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 60/98 (61%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + +D +V D+PGTTRD + I + + + DTAG+R+ Sbjct: 208 KLAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMTRDEREYILIDTAGVRKR 267 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 I VEK + +T +E+++++LL+ I+++ IS Sbjct: 268 GKITEAVEKFSVIKTLQAIEDSNVVLLV--IDARDGIS 303 >gi|326560782|gb|EGE11149.1| GTP-binding protein EngA [Moraxella catarrhalis 103P14B1] gi|326563523|gb|EGE13782.1| GTP-binding protein EngA [Moraxella catarrhalis 12P80B1] Length = 472 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 36/97 (37%), Positives = 61/97 (62%), Gaps = 5/97 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N L +D +V D+PGTTRD + I + EG + DTAG+R Sbjct: 181 KLAIIGRPNVGKSTLVNRLLGEDRVVVFDMPGTTRDSIYIPFEREGRSYVLIDTAGVRRR 240 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314 D+ VEK + +T +++A++++++ I++K+ I Sbjct: 241 GRIDEKVEKFSVVKTLQAIKDANVVVVV--IDAKEGI 275 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 3/87 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L K A+V D+ G TRD D E + DT GI E D Sbjct: 7 VALIGRPNVGKSTLFNQLTKSRQALVADLAGLTRDRQYGDAHFENKSFIVVDTGGIGEMD 66 Query: 282 D---IVEKEGIKRTFLEVENADLILLL 305 D ++ +++ + AD+++ + Sbjct: 67 DGSGNIDDYMATQSYTAIHEADIVVFV 93 >gi|160903053|ref|YP_001568634.1| small GTP-binding protein [Petrotoga mobilis SJ95] gi|160360697|gb|ABX32311.1| small GTP-binding protein [Petrotoga mobilis SJ95] Length = 460 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 53/184 (28%), Positives = 87/184 (47%), Gaps = 34/184 (18%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKSSLFN++ + AIV++IPGTTRD + + + + DTAG+R+ Sbjct: 187 KVSIVGRPNVGKSSLFNSIIGSERAIVSEIPGTTRDAIDHLVTMGDNTFRFIDTAGMRKK 246 Query: 281 DDI----VEKEGIKRTFLEVENADLILLLKEINSKKEISFP----------KNIDFIFIG 326 I +E I RT +E +D+++L+ ++S + I+ + I Sbjct: 247 STIHYASIEMFSISRTINAIEKSDVVILV--VDSTEGITHQDKSIIGIAEKRGKGTIIAF 304 Query: 327 TKSDLYSTYTEEYDHLISSFTGE------------------GLEELINKIKSILSNKFKK 368 K DL S + + + F E G++ELI IK + ++ KK Sbjct: 305 NKWDLVSNNHQRKEEFFNYFEKELYFVNYSPLVFTSAPKRWGIQELITAIKEVEKSRNKK 364 Query: 369 LPFS 372 +P S Sbjct: 365 IPTS 368 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 49/85 (57%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET- 280 ++I+G N GKS+LFN + + +IV D+PG TRD ++ + + + DT GI E Sbjct: 6 VLIIGKPNVGKSTLFNRMIGERKSIVHDMPGVTRDNVSSTIQWDDISFTLVDTCGIFEQP 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 +D +E+ K F +++ L++ + Sbjct: 66 EDNIEERQKKIIFESLKDVSLVIFV 90 >gi|206579507|ref|YP_002237139.1| GTP-binding protein EngA [Klebsiella pneumoniae 342] gi|206568565|gb|ACI10341.1| GTP-binding protein EngA [Klebsiella pneumoniae 342] Length = 498 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 36/98 (36%), Positives = 62/98 (63%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + +D +V D+PGTTRD + I + + + DTAG+R+ Sbjct: 212 KLAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMQRDEREYVLIDTAGVRKR 271 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D+VEK + +T +E+A+++LL+ I++++ IS Sbjct: 272 GKITDVVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 307 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG DT GI T+ Sbjct: 11 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGTE 70 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE +++ L +E AD++L + Sbjct: 71 EGVETRMAEQSLLAIEEADVVLFM 94 >gi|83815424|ref|YP_444485.1| Era/ThdF family GTP-binding protein [Salinibacter ruber DSM 13855] gi|83756818|gb|ABC44931.1| GTP-binding protein, Era/ThdF family [Salinibacter ruber DSM 13855] Length = 505 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 44/142 (30%), Positives = 73/142 (51%), Gaps = 14/142 (9%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 + I+G N GKS+LFN L AIV D PG TRD + + + +G+ + + DT G + + Sbjct: 76 VAIVGRPNVGKSTLFNRLTGSRQAIVEDTPGVTRDRVYGEAEWKGHTIPLVDTGGYVPRS 135 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISF---PKNIDFIFIGTKSDLY 332 DD E+ ++ + +E+AD+IL + ++ + KEI+ P + + K+D Sbjct: 136 DDPYERAIREQAEIALEDADVILFVVDVTTGITEMDKEIATVLRPTETPVMVVANKAD-- 193 Query: 333 STYTEEYDHLISSFTGEGLEEL 354 EE + S F GL E+ Sbjct: 194 ---NEEREWDASEFYQLGLGEV 212 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 53/191 (27%), Positives = 87/191 (45%), Gaps = 28/191 (14%) Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269 G E ++ ++ ++G NAGKSSL NA D AIVT+ PGTTRD + + EG + Sbjct: 236 GTEDEADKDRVQVSLVGKPNAGKSSLVNATLGFDRAIVTERPGTTRDTVQSVVQYEGRDL 295 Query: 270 KISDTAGI--RETDDIVEKEGIKRTFLEVENADLILL---------------LKEINSKK 312 + DTAG+ R D VE R+ + D+ +L L E+N K Sbjct: 296 MLVDTAGMQKRSKADGVEFYATVRSERAIRAGDVCVLVLDATEELHKQDLSVLSEVNEHK 355 Query: 313 E--ISFPKNIDFIFIGTKS-DLYSTYTEEY----DHL----ISSFTGEGLEELINKIKSI 361 + + D + + D Y+ Y +Y DH+ +S+ T + + EL++K + Sbjct: 356 KGMVVAVNKWDLVPKDDGTMDQYTKYLRQYLGTLDHVPIVYVSAVTKQRVYELLDKALEV 415 Query: 362 LSNKFKKLPFS 372 + ++ S Sbjct: 416 AEARATRVQTS 426 >gi|331673966|ref|ZP_08374729.1| ribosome-associated GTPase EngA [Escherichia coli TA280] gi|331069239|gb|EGI40631.1| ribosome-associated GTPase EngA [Escherichia coli TA280] Length = 503 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G + DTAG+R+ Sbjct: 217 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 276 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D VEK + +T +E+A++++L+ I++++ IS Sbjct: 277 GKITDAVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 312 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG DT GI T+ Sbjct: 18 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 77 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 D VE +++ L +E AD++L + Sbjct: 78 DGVETRMAEQSLLAIEEADVVLFM 101 >gi|322434484|ref|YP_004216696.1| ribosome-associated GTPase EngA [Acidobacterium sp. MP5ACTX9] gi|321162211|gb|ADW67916.1| ribosome-associated GTPase EngA [Acidobacterium sp. MP5ACTX9] Length = 622 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 56/191 (29%), Positives = 93/191 (48%), Gaps = 26/191 (13%) Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267 +Q GE K+ I+G N GKS+L NAL + D AIV+ I GTTRD + ++ +G+ Sbjct: 335 TQRTHGEYESRETKVAIIGRPNVGKSTLLNALTETDRAIVSPIAGTTRDAVDEIVEKKGH 394 Query: 268 LVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF 324 + + DTAGIR +T + EK + +E AD+ LL+ I++++ ++ NID Sbjct: 395 IFRFVDTAGIRKKGKTKMMAEKLSVIMARKHLEAADVSLLV--IDAQEGVT---NIDANI 449 Query: 325 IGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384 G Y E +G + +INK + + + P + K + + Sbjct: 450 GG--------YAHE--------SGRSVIIVINKWDLVTTARTDGKPAA--DQKAYAQQVR 491 Query: 385 QTVRYLEMASL 395 ++YL+ A L Sbjct: 492 DALKYLDYAPL 502 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/97 (28%), Positives = 55/97 (56%), Gaps = 3/97 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I + G N GKS+LFN L +IV D PG TRD + +++ + ++ DT G+ D Sbjct: 142 IAVCGRPNVGKSTLFNRLTGSRRSIVGDEPGITRDRIYGEIEWQNVKARLVDTGGVVPDD 201 Query: 282 D-IVEKEGIKRTFLEVENADLILLLKEINSKKEISFP 317 + ++ E ++ + ++ AD I+++ ++ + E++ P Sbjct: 202 EALIPSEIFRQAQVALQEADAIVMV--VDGRTELASP 236 >gi|323491635|ref|ZP_08096814.1| GTP-binding protein Der [Vibrio brasiliensis LMG 20546] gi|323314211|gb|EGA67296.1| GTP-binding protein Der [Vibrio brasiliensis LMG 20546] Length = 494 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G + DTAG+R Sbjct: 207 KLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRRR 266 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 ++ VEK + +T VE+A++++L+ I++++ IS Sbjct: 267 TRINETVEKFSVVKTLKAVEDANVVMLV--IDARENIS 302 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD L + + DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE + +++ ++ AD++L + Sbjct: 65 EGVETKMAQQSLAAIDEADVVLFM 88 >gi|194290002|ref|YP_002005909.1| gtp-binding protein enga [Cupriavidus taiwanensis LMG 19424] gi|238692737|sp|B3R1J8|DER_CUPTR RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|193223837|emb|CAQ69846.1| Ribosome-Associated GTP-binding protein protein [Cupriavidus taiwanensis LMG 19424] Length = 447 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 34/100 (34%), Positives = 61/100 (61%), Gaps = 5/100 (5%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G KI I+G N GKS+L N L ++ I D+PGTTRD + ++ + G + DTAG+R Sbjct: 180 GVKIAIVGRPNVGKSTLVNTLIGEERVIAFDMPGTTRDAIYVEFERGGKPYTLIDTAGLR 239 Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + +EK + +T + +A++++LL ++++++IS Sbjct: 240 RRGKVFEAIEKFSVVKTLQSIADANVVILL--LDAQQDIS 277 Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust. Identities = 17/35 (48%), Positives = 24/35 (68%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 I ++G N GKS+LFN + + A+V D+PG TRD Sbjct: 5 IALVGRPNVGKSTLFNRMTRSRDALVADLPGLTRD 39 >gi|315288063|gb|EFU47463.1| ribosome-associated GTPase EngA [Escherichia coli MS 110-3] gi|324008519|gb|EGB77738.1| ribosome-associated GTPase EngA [Escherichia coli MS 57-2] Length = 499 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G + DTAG+R+ Sbjct: 213 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 272 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D VEK + +T +E+A++++L+ I++++ IS Sbjct: 273 GKITDAVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 308 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 50/89 (56%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG DT GI T+ Sbjct: 14 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 73 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310 D VE +++ L +E AD++L + + S Sbjct: 74 DGVETRMAEQSLLAIEEADVVLFMVDARS 102 >gi|300898385|ref|ZP_07116728.1| ribosome-associated GTPase EngA [Escherichia coli MS 198-1] gi|300940238|ref|ZP_07154836.1| ribosome-associated GTPase EngA [Escherichia coli MS 21-1] gi|300357925|gb|EFJ73795.1| ribosome-associated GTPase EngA [Escherichia coli MS 198-1] gi|300454934|gb|EFK18427.1| ribosome-associated GTPase EngA [Escherichia coli MS 21-1] Length = 499 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G + DTAG+R+ Sbjct: 213 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 272 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D VEK + +T +E+A++++L+ I++++ IS Sbjct: 273 GKITDAVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 308 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG DT GI T+ Sbjct: 14 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 73 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 D VE +++ L +E AD++L + Sbjct: 74 DGVETRMAEQSLLAIEEADVVLFM 97 >gi|294506233|ref|YP_003570291.1| GTPases [Salinibacter ruber M8] gi|294342561|emb|CBH23339.1| putative GTPases [Salinibacter ruber M8] Length = 505 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 44/142 (30%), Positives = 73/142 (51%), Gaps = 14/142 (9%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 + I+G N GKS+LFN L AIV D PG TRD + + + +G+ + + DT G + + Sbjct: 76 VAIVGRPNVGKSTLFNRLTGSRQAIVEDTPGVTRDRVYGEAEWKGHTIPLVDTGGYVPRS 135 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISF---PKNIDFIFIGTKSDLY 332 DD E+ ++ + +E+AD+IL + ++ + KEI+ P + + K+D Sbjct: 136 DDPYERAIREQAEIALEDADVILFVVDVTTGITEMDKEIATVLRPTETPVMVVANKAD-- 193 Query: 333 STYTEEYDHLISSFTGEGLEEL 354 EE + S F GL E+ Sbjct: 194 ---NEEREWDASEFYQLGLGEV 212 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 51/180 (28%), Positives = 83/180 (46%), Gaps = 28/180 (15%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI--R 278 ++ ++G NAGKSSL NA D AIVT+ PGTTRD + + EG + + DTAG+ R Sbjct: 247 QVSLVGKPNAGKSSLVNATLGFDRAIVTERPGTTRDTVQSVVQYEGRDLMLVDTAGMQKR 306 Query: 279 ETDDIVEKEGIKRTFLEVENADLILL---------------LKEINSKKE--ISFPKNID 321 D VE R+ + D+ +L L E+N K+ + D Sbjct: 307 SKADGVEFYATVRSERAIRAGDVCVLVLDATEELHKQDLSVLSEVNEHKKGMVVAVNKWD 366 Query: 322 FIFIGTKS-DLYSTYTEEY----DHL----ISSFTGEGLEELINKIKSILSNKFKKLPFS 372 + + D Y+ Y +Y DH+ +S+ T + + EL++K + + ++ S Sbjct: 367 LVPKDDGTMDQYTKYLRQYLGTLDHVPIVYVSAVTKQRVYELLDKALEVAEARATRVQTS 426 >gi|293410925|ref|ZP_06654501.1| ribosome-associated GTPase EngA [Escherichia coli B354] gi|291471393|gb|EFF13877.1| ribosome-associated GTPase EngA [Escherichia coli B354] Length = 499 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G + DTAG+R+ Sbjct: 213 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 272 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D VEK + +T +E+A++++L+ I++++ IS Sbjct: 273 GKITDAVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 308 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG DT GI T+ Sbjct: 14 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 73 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE +++ L +E AD++L + Sbjct: 74 NGVETRMAEQSLLAIEEADVVLFM 97 >gi|170289127|ref|YP_001739365.1| small GTP-binding protein [Thermotoga sp. RQ2] gi|238688753|sp|B1LBI4|DER_THESQ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|170176630|gb|ACB09682.1| small GTP-binding protein [Thermotoga sp. RQ2] Length = 439 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 4/94 (4%) Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 I + K+ I+G N GKS+LFNA+ K+ A+V+ IPGTTRD + ++ ++G DTA Sbjct: 177 ITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDEEVFIDGKKYVFVDTA 236 Query: 276 GIRETDDI----VEKEGIKRTFLEVENADLILLL 305 G+R + VEK R +E AD+++++ Sbjct: 237 GLRRRSRVEPRTVEKYSNYRVVDSIEKADVVVIV 270 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 39/126 (30%), Positives = 63/126 (50%), Gaps = 9/126 (7%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET- 280 ++I+G N GKS+LFN L +K AIV D G TRD + ++ G K+ DT G+ + Sbjct: 4 VLIVGKPNVGKSTLFNKLVRKKKAIVEDEEGVTRDPVQDIVEWYGKTFKLVDTCGVFDNP 63 Query: 281 DDIVEKEGIKRTFLEVENADLILLL--------KEINSKKEISFPKNIDFIFIGTKSDLY 332 DI+ ++ + T + ADL+L + KE S + N+D I + K++ Sbjct: 64 QDIISQKMKEITLNMIREADLVLFVVDGKRGITKEDESLADFLRKSNVDTILVANKAENL 123 Query: 333 STYTEE 338 + E Sbjct: 124 REFERE 129 >gi|117624740|ref|YP_853653.1| GTP-binding protein EngA [Escherichia coli APEC O1] gi|237705021|ref|ZP_04535502.1| GTP-binding protein EngA [Escherichia sp. 3_2_53FAA] gi|91073411|gb|ABE08292.1| probable GTP-binding protein EngA [Escherichia coli UTI89] gi|115513864|gb|ABJ01939.1| putative GTP-binding protein EngA [Escherichia coli APEC O1] gi|226901387|gb|EEH87646.1| GTP-binding protein EngA [Escherichia sp. 3_2_53FAA] Length = 503 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G + DTAG+R+ Sbjct: 217 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 276 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D VEK + +T +E+A++++L+ I++++ IS Sbjct: 277 GKITDAVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 312 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 50/89 (56%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG DT GI T+ Sbjct: 18 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 77 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310 D VE +++ L +E AD++L + + S Sbjct: 78 DGVETRMAEQSLLAIEEADVVLFMVDARS 106 >gi|330443932|ref|YP_004376918.1| GTP-binding protein engA [Chlamydophila pecorum E58] gi|328807042|gb|AEB41215.1| GTP-binding protein engA [Chlamydophila pecorum E58] Length = 483 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 49/160 (30%), Positives = 83/160 (51%), Gaps = 20/160 (12%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RE 279 +I ILG N GKSSLFN L K+ +AIV GTTRD L + +++ DT G+ ++ Sbjct: 3 RIAILGRPNVGKSSLFNRLCKRSLAIVNAEEGTTRDRLYGSAQICDSTIQVIDTGGVNKD 62 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISF-----PKNIDFIFIGTKSD- 330 + D +K K+ + + ADL+LL+ +I +++++ P N I + K+D Sbjct: 63 SQDHFQKHIFKQALVGAKEADLLLLVVDIRCGITEQDMQLAKLLRPLNKPIILVANKADS 122 Query: 331 ---------LYSTYTEEYDHLISSFTGEGLEELINKIKSI 361 LYS E + S+ G+ ++ L++KI+ + Sbjct: 123 RKDEFGIHELYSLGIPEIV-VTSAAHGKHIDTLVHKIQRL 161 Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 15/166 (9%) Query: 155 SSLYGQWIDKLTH-IRSFI----------EADLDFSEEEDVQNFSSKEVLNDILFLKNDI 203 S+ +G+ ID L H I+ + D D EE+++ E + + +F +N Sbjct: 144 SAAHGKHIDTLVHKIQRLAKIPEIQPESPQDDEDLHEEKELLCDKESEAIFEEVFDENHE 203 Query: 204 SSHISQGKLGEIIRNG-YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262 S + +L + N KI ++G N GKSS+ N L ++ I +IPGTTRD + I Sbjct: 204 SFFVEDPQLPPLETNQPLKIALIGRPNVGKSSIINGLLNEERCITDNIPGTTRDNVDILY 263 Query: 263 DLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305 E DTAG+R+ + VE RT + AD+ LL+ Sbjct: 264 TKEDRSYLFIDTAGLRKMKSVKNSVEWISTSRTEKAISRADICLLV 309 >gi|281412785|ref|YP_003346864.1| ribosome-associated GTPase EngA [Thermotoga naphthophila RKU-10] gi|281373888|gb|ADA67450.1| ribosome-associated GTPase EngA [Thermotoga naphthophila RKU-10] Length = 439 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 4/94 (4%) Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 I + K+ I+G N GKS+LFNA+ K+ A+V+ IPGTTRD + ++ ++G DTA Sbjct: 177 ITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDEEVFIDGKKYVFVDTA 236 Query: 276 GIRETDDI----VEKEGIKRTFLEVENADLILLL 305 G+R + VEK R +E AD+++++ Sbjct: 237 GLRRRSRVEPRTVEKYSNYRVVDSIEKADVVVIV 270 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 39/126 (30%), Positives = 63/126 (50%), Gaps = 9/126 (7%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET- 280 ++I+G N GKS+LFN L +K AIV D G TRD + ++ G K+ DT G+ + Sbjct: 4 VLIVGKPNVGKSTLFNKLVRKKKAIVEDEEGVTRDPVQDIVEWYGKTFKLVDTCGVFDNP 63 Query: 281 DDIVEKEGIKRTFLEVENADLILLL--------KEINSKKEISFPKNIDFIFIGTKSDLY 332 DI+ ++ + T + ADL+L + KE S + N+D I + K++ Sbjct: 64 QDIISQKMKEITLNMIREADLVLFVVDGKRGITKEDESLADFLRKSNVDTILVANKAENL 123 Query: 333 STYTEE 338 + E Sbjct: 124 REFERE 129 >gi|254884683|ref|ZP_05257393.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|319642352|ref|ZP_07997007.1| hypothetical protein HMPREF9011_02607 [Bacteroides sp. 3_1_40A] gi|254837476|gb|EET17785.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|317386012|gb|EFV66936.1| hypothetical protein HMPREF9011_02607 [Bacteroides sp. 3_1_40A] Length = 396 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 54/167 (32%), Positives = 82/167 (49%), Gaps = 20/167 (11%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDTA 275 N IV+ G N+GKSSL NAL +D A+V+DIPGTT D ++ ++++ G + I DT Sbjct: 10 NRLHIVLFGKRNSGKSSLINALTGQDTALVSDIPGTTTDAVSKAMEIQHIGPCLFI-DTP 68 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEI-NSKKEISF-----PKNIDFIFIGTKS 329 G + ++ E I RT +E D+ LLL E N + E + +NI I I K+ Sbjct: 69 GFDDEGELGEMR-ITRTLKAIERTDIALLLCEDGNCEDEKQWMEQLNKRNIPVILILNKA 127 Query: 330 DLYSTYTEEYDH----------LISSFTGEGLEELINKIKSILSNKF 366 D+ D +IS+ G+E+++ I L F Sbjct: 128 DIRKDIASTRDRIEKECGQNPLIISAKEQTGIEKILQAILEKLPADF 174 >gi|238752471|ref|ZP_04613947.1| GTP-binding protein engA [Yersinia rohdei ATCC 43380] gi|238709320|gb|EEQ01562.1| GTP-binding protein engA [Yersinia rohdei ATCC 43380] Length = 494 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 48/155 (30%), Positives = 76/155 (49%), Gaps = 19/155 (12%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L A+V D PG TRD ++EG+ + DT GI T+ Sbjct: 5 IALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGHEFIVIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL---------------KEINSKKEISF--PKNIDFIF 324 D VE + ++ L +E AD++L + + + S+++ +F D I Sbjct: 65 DGVETKMAGQSLLAIEEADIVLFMVDARAGLMPADQGIAQHLRSREKATFLVANKTDGID 124 Query: 325 IGTKS-DLYSTYTEEYDHLISSFTGEGLEELINKI 358 T + D YS E H I++ G G+ +LI + Sbjct: 125 PDTATADFYSLGLGEV-HAIAASHGRGVTQLIEDV 158 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 60/98 (61%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + +D +V D+PGTTRD + I + + + DTAG+R+ Sbjct: 208 KLAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMTRDEREYILIDTAGVRKR 267 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 I VEK + +T +E+++++LL+ I+++ IS Sbjct: 268 GKITEAVEKFSVIKTLQAIEDSNVVLLV--IDARDGIS 303 >gi|323697490|ref|ZP_08109402.1| ribosome-associated GTPase EngA [Desulfovibrio sp. ND132] gi|323457422|gb|EGB13287.1| ribosome-associated GTPase EngA [Desulfovibrio desulfuricans ND132] Length = 505 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 61/224 (27%), Positives = 105/224 (46%), Gaps = 38/224 (16%) Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 + G ++ +LG NAGKSS+ NAL KD IV+D+ GTTRD + + + G DTA Sbjct: 182 VEKGLRLTMLGRPNAGKSSIINALIGKDRLIVSDVAGTTRDSIDVTFEKGGKRYTFVDTA 241 Query: 276 GIRETDDI---VEKEGIKRTFLEVENADLILLLKEI------NSKKEISF--PKNIDFIF 324 G+R+ +I +EK + R + +D+ +L +I K+ I F + F+ Sbjct: 242 GVRKRANIQDHLEKISVIRALKNSKRSDVTVLTIDITLGVGRQDKRLIEFLAKEKTPFMV 301 Query: 325 IGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384 + K+DL E + + +F E L+ + ++++ K L L L+ Sbjct: 302 VVNKADLIP--RSETNRALEAFREE--LRLVPHVPVVMTSAVKGLGIG------KLLPLA 351 Query: 385 QTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQL 428 +T+R K+C ++R+ + L +I V VE+L Sbjct: 352 ETMR---------KEC-------DIRVGTGELNRIMQAV-VEKL 378 Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 32/56 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 + ++G N GKS+LFN L +K +I D+PG TRD + + + + DT G+ Sbjct: 5 VALVGRPNVGKSTLFNRLLRKSRSITHDLPGVTRDRIYGECIMGETRFDLVDTGGM 60 >gi|312884308|ref|ZP_07744017.1| GTP-binding protein EngA [Vibrio caribbenthicus ATCC BAA-2122] gi|309368081|gb|EFP95624.1| GTP-binding protein EngA [Vibrio caribbenthicus ATCC BAA-2122] Length = 495 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G + DTAG+R Sbjct: 208 KLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRRR 267 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 ++ VEK + +T +E+A+++LL+ I++++ IS Sbjct: 268 KRINETVEKFSVVKTLKAIEDANVVLLV--IDARENIS 303 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD L + + DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRSRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE + +++ ++ AD++L + Sbjct: 65 EGVETKMAEQSLAAIDEADVVLFM 88 >gi|301024743|ref|ZP_07188383.1| ribosome-associated GTPase EngA [Escherichia coli MS 69-1] gi|300396412|gb|EFJ79950.1| ribosome-associated GTPase EngA [Escherichia coli MS 69-1] Length = 499 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G + DTAG+R+ Sbjct: 213 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 272 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D VEK + +T +E+A++++L+ I++++ IS Sbjct: 273 GKITDAVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 308 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG DT GI T+ Sbjct: 14 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 73 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 D VE +++ L +E AD++L + Sbjct: 74 DGVETRMAEQSLLAIEEADVVLFM 97 >gi|331648208|ref|ZP_08349298.1| ribosome-associated GTPase EngA [Escherichia coli M605] gi|26109281|gb|AAN81483.1|AE016764_165 Probable GTP-binding protein engA [Escherichia coli CFT073] gi|331043068|gb|EGI15208.1| ribosome-associated GTPase EngA [Escherichia coli M605] Length = 503 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G + DTAG+R+ Sbjct: 217 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 276 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D VEK + +T +E+A++++L+ I++++ IS Sbjct: 277 GKITDAVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 312 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG DT GI T+ Sbjct: 18 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 77 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 D VE +++ L +E AD++L + Sbjct: 78 DGVETRMAEQSLLAIEEADVVLFM 101 >gi|331643131|ref|ZP_08344266.1| ribosome-associated GTPase EngA [Escherichia coli H736] gi|331653939|ref|ZP_08354940.1| ribosome-associated GTPase EngA [Escherichia coli M718] gi|331678502|ref|ZP_08379177.1| ribosome-associated GTPase EngA [Escherichia coli H591] gi|332278336|ref|ZP_08390749.1| conserved hypothetical protein [Shigella sp. D9] gi|25328223|pir||E91050 probable GTP-binding factor [imported] - Escherichia coli (strain O157:H7, substrain RIMD 0509952) gi|25328252|pir||A85895 probable GTP-binding factor Z3774 [imported] - Escherichia coli (strain O157:H7, substrain EDL933) gi|12516902|gb|AAG57621.1|AE005480_8 putative GTP-binding factor [Escherichia coli O157:H7 str. EDL933] gi|13362843|dbj|BAB36796.1| putative GTP-binding factor [Escherichia coli O157:H7 str. Sakai] gi|209763418|gb|ACI80021.1| putative GTP-binding factor [Escherichia coli] gi|209763420|gb|ACI80022.1| putative GTP-binding factor [Escherichia coli] gi|209763422|gb|ACI80023.1| putative GTP-binding factor [Escherichia coli] gi|209763426|gb|ACI80025.1| putative GTP-binding factor [Escherichia coli] gi|331039929|gb|EGI12149.1| ribosome-associated GTPase EngA [Escherichia coli H736] gi|331048788|gb|EGI20864.1| ribosome-associated GTPase EngA [Escherichia coli M718] gi|331074962|gb|EGI46282.1| ribosome-associated GTPase EngA [Escherichia coli H591] gi|332100688|gb|EGJ04034.1| conserved hypothetical protein [Shigella sp. D9] Length = 503 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G + DTAG+R+ Sbjct: 217 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 276 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D VEK + +T +E+A++++L+ I++++ IS Sbjct: 277 GKITDAVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 312 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG DT GI T+ Sbjct: 18 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 77 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 D VE +++ L +E AD++L + Sbjct: 78 DGVETRMAEQSLLAIEEADVVLFM 101 >gi|238794826|ref|ZP_04638427.1| GTP-binding protein engA [Yersinia intermedia ATCC 29909] gi|238725839|gb|EEQ17392.1| GTP-binding protein engA [Yersinia intermedia ATCC 29909] Length = 495 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 48/155 (30%), Positives = 76/155 (49%), Gaps = 19/155 (12%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L A+V D PG TRD ++EG+ + DT GI T+ Sbjct: 5 IALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGHEFIVIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL---------------KEINSKKEISF--PKNIDFIF 324 D VE + ++ L +E AD++L + + + S+++ +F D I Sbjct: 65 DGVETKMAGQSLLAIEEADIVLFMVDARAGLMPADQGIAQHLRSREKATFLVANKTDGID 124 Query: 325 IGTKS-DLYSTYTEEYDHLISSFTGEGLEELINKI 358 T + D YS E H I++ G G+ +LI + Sbjct: 125 PDTATADFYSLGLGEV-HAIAASHGRGVTQLIEDV 158 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 60/98 (61%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + +D +V D+PGTTRD + I + + + DTAG+R+ Sbjct: 209 KLAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMTRDEREYILIDTAGVRKR 268 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 I VEK + +T +E+++++LL+ I+++ IS Sbjct: 269 GKITETVEKFSVIKTLQAIEDSNVVLLV--IDARDGIS 304 >gi|71898142|ref|ZP_00680328.1| Small GTP-binding protein domain:GTP-binding [Xylella fastidiosa Ann-1] gi|71732116|gb|EAO34172.1| Small GTP-binding protein domain:GTP-binding [Xylella fastidiosa Ann-1] Length = 465 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 33/87 (37%), Positives = 54/87 (62%), Gaps = 3/87 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--- 278 I +G N GKS+L N L ++ IV+D+PGTTRD +T+DL+ + + ++ DTAG+R Sbjct: 181 IAFVGRPNVGKSTLVNRLLGEERMIVSDVPGTTRDSITVDLERDEFRYRLVDTAGLRRKS 240 Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL 305 + ++ VEK +T +E + +LL Sbjct: 241 KVEEAVEKFSAFKTLQAIEQCQVAVLL 267 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 45/179 (25%), Positives = 80/179 (44%), Gaps = 22/179 (12%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280 + ++G N GKS+LFNAL A+V D PG TRD ++G L + DT G+ Sbjct: 5 VALVGRPNVGKSTLFNALTLTRDALVHDQPGVTRDRHYGVCRIDGQPLFAVVDTGGMVGK 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK------------KEISFPKNIDFIFIGTK 328 +D + ++ L AD++L + + +++S P + I Sbjct: 65 EDGLAGATARQARLAAAEADVLLFVVNVREGASALDDDILAWLRKLSQPTLLVINKIDGV 124 Query: 329 SDLYSTYTEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380 SD +T E+ H +S+ +GL++LI ++ + L + F+ S + H+ Sbjct: 125 SD--TTVHSEFAHYGFSDVVPVSAAHRQGLDDLIEQVLAWLPERSIGEAFNEDSERIHI 181 >gi|320175074|gb|EFW50187.1| GTP-binding protein EngA [Shigella dysenteriae CDC 74-1112] Length = 490 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G + DTAG+R+ Sbjct: 204 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 263 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D VEK + +T +E+A++++L+ I++++ IS Sbjct: 264 GKITDAVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 299 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 D VE +++ L +E AD++L + Sbjct: 65 DGVETRMAEQSLLAIEEADVVLFM 88 >gi|300920666|ref|ZP_07137077.1| ribosome-associated GTPase EngA [Escherichia coli MS 115-1] gi|300412347|gb|EFJ95657.1| ribosome-associated GTPase EngA [Escherichia coli MS 115-1] Length = 499 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G + DTAG+R+ Sbjct: 213 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 272 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D VEK + +T +E+A++++L+ I++++ IS Sbjct: 273 GKITDAVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 308 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG DT GI T+ Sbjct: 14 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 73 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 D VE +++ L +E AD++L + Sbjct: 74 DGVETRMAEQSLLAIEEADVVLFM 97 >gi|299135837|ref|ZP_07029021.1| ribosome-associated GTPase EngA [Acidobacterium sp. MP5ACTX8] gi|298601961|gb|EFI58115.1| ribosome-associated GTPase EngA [Acidobacterium sp. MP5ACTX8] Length = 631 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 41/96 (42%), Positives = 55/96 (57%), Gaps = 3/96 (3%) Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272 GE I KI I+G N GKS+L NAL D AIV+ I GTTRD + + EG+ + Sbjct: 347 GEHISRETKIAIIGRPNVGKSTLLNALTGSDRAIVSPIAGTTRDAVDEVVTREGHDFRFI 406 Query: 273 DTAGIR---ETDDIVEKEGIKRTFLEVENADLILLL 305 DTAGIR +T + EK + + +E AD+ LL+ Sbjct: 407 DTAGIRRKGKTKLLAEKLSVIMSRKHLEAADVALLV 442 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 31/97 (31%), Positives = 58/97 (59%), Gaps = 3/97 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I G N GKS+LFN L + +IV D PG TRD + +++ G V++ DT G+ D Sbjct: 137 VAICGRPNVGKSTLFNRLTQTRRSIVGDEPGITRDRIYGEVEWAGRDVRLVDTGGVIPDD 196 Query: 282 D-IVEKEGIKRTFLEVENADLILLLKEINSKKEISFP 317 + ++ E ++ + +E AD+I+++ ++ + E++ P Sbjct: 197 EALIPAEIFRQAKVGLEEADVIIMV--VDGRTELAAP 231 >gi|209763424|gb|ACI80024.1| putative GTP-binding factor [Escherichia coli] Length = 503 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G + DTAG+R+ Sbjct: 217 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 276 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D VEK + +T +E+A++++L+ I++++ IS Sbjct: 277 GKITDAVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 312 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG DT GI T+ Sbjct: 18 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 77 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 D VE +++ L +E AD++L + Sbjct: 78 DGVETRMAEQSLLAIEEADVVLFM 101 >gi|227887546|ref|ZP_04005351.1| GTP-binding protein [Escherichia coli 83972] gi|300981973|ref|ZP_07175819.1| ribosome-associated GTPase EngA [Escherichia coli MS 45-1] gi|300998067|ref|ZP_07181927.1| ribosome-associated GTPase EngA [Escherichia coli MS 200-1] gi|301047143|ref|ZP_07194239.1| ribosome-associated GTPase EngA [Escherichia coli MS 185-1] gi|227835896|gb|EEJ46362.1| GTP-binding protein [Escherichia coli 83972] gi|300300945|gb|EFJ57330.1| ribosome-associated GTPase EngA [Escherichia coli MS 185-1] gi|300304046|gb|EFJ58566.1| ribosome-associated GTPase EngA [Escherichia coli MS 200-1] gi|300408868|gb|EFJ92406.1| ribosome-associated GTPase EngA [Escherichia coli MS 45-1] gi|315292449|gb|EFU51801.1| ribosome-associated GTPase EngA [Escherichia coli MS 153-1] gi|324011217|gb|EGB80436.1| ribosome-associated GTPase EngA [Escherichia coli MS 60-1] Length = 499 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G + DTAG+R+ Sbjct: 213 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 272 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D VEK + +T +E+A++++L+ I++++ IS Sbjct: 273 GKITDAVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 308 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG DT GI T+ Sbjct: 14 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 73 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 D VE +++ L +E AD++L + Sbjct: 74 DGVETRMAEQSLLAIEEADVVLFM 97 >gi|86605901|ref|YP_474664.1| GTP-binding protein EngA [Synechococcus sp. JA-3-3Ab] gi|123506716|sp|Q2JV46|DER_SYNJA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|86554443|gb|ABC99401.1| GTP-binding protein EngA [Synechococcus sp. JA-3-3Ab] Length = 459 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 35/87 (40%), Positives = 51/87 (58%), Gaps = 3/87 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKSSL N L + AIV+ I GTTRD + ++ EG ++ DTAGIR Sbjct: 181 VAIVGRPNVGKSSLLNRLVGSERAIVSPIAGTTRDAVDTLVEWEGQSYRLIDTAGIRRKS 240 Query: 282 DI---VEKEGIKRTFLEVENADLILLL 305 + VE I R F ++ +D++LL+ Sbjct: 241 RVEYGVEFFSINRAFKAIQRSDVVLLV 267 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 36/61 (59%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKSSL N LA AIV D PG TRD L +++ G +++ DT G+ D Sbjct: 6 VAVVGRPNVGKSSLVNRLAGVRSAIVHDEPGITRDRLYQEVEWNGRRLRVVDTGGLVFGD 65 Query: 282 D 282 D Sbjct: 66 D 66 >gi|81242044|gb|ABB62754.1| putative GTP-binding factor [Shigella dysenteriae Sd197] Length = 503 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G + DTAG+R+ Sbjct: 217 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 276 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D VEK + +T +E+A++++L+ I++++ IS Sbjct: 277 GKITDAVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 312 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG DT GI T+ Sbjct: 18 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 77 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 D VE +++ L +E AD++L + Sbjct: 78 DGVETRMAEQSLLAIEEADVVLFM 101 >gi|81246371|gb|ABB67079.1| putative GTP-binding factor [Shigella boydii Sb227] Length = 503 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G + DTAG+R+ Sbjct: 217 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 276 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D VEK + +T +E+A++++L+ I++++ IS Sbjct: 277 GKITDAVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 312 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG DT GI T+ Sbjct: 18 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 77 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 D VE +++ L +E AD++L + Sbjct: 78 DGVETRMAEQSLLAIEEADVVLFM 101 >gi|71274603|ref|ZP_00650891.1| Small GTP-binding protein domain:GTP-binding [Xylella fastidiosa Dixon] gi|71900907|ref|ZP_00683022.1| Small GTP-binding protein domain:GTP-binding [Xylella fastidiosa Ann-1] gi|170730865|ref|YP_001776298.1| GTP-binding protein EngA [Xylella fastidiosa M12] gi|238687938|sp|B0U489|DER_XYLFM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|71164335|gb|EAO14049.1| Small GTP-binding protein domain:GTP-binding [Xylella fastidiosa Dixon] gi|71729319|gb|EAO31435.1| Small GTP-binding protein domain:GTP-binding [Xylella fastidiosa Ann-1] gi|167965658|gb|ACA12668.1| GTP-binding protein [Xylella fastidiosa M12] Length = 465 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 33/87 (37%), Positives = 54/87 (62%), Gaps = 3/87 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--- 278 I +G N GKS+L N L ++ IV+D+PGTTRD +T+DL+ + + ++ DTAG+R Sbjct: 181 IAFVGRPNVGKSTLVNRLLGEERMIVSDVPGTTRDSITVDLERDEFRYRLVDTAGLRRKS 240 Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL 305 + ++ VEK +T +E + +LL Sbjct: 241 KVEEAVEKFSAFKTLQAIEQCQVAVLL 267 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 42/164 (25%), Positives = 74/164 (45%), Gaps = 22/164 (13%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280 + ++G N GKS+LFNAL A+V D PG TRD ++G L + DT G+ Sbjct: 5 VALVGRPNVGKSTLFNALTLTRDALVHDQPGVTRDRHYGVCRIDGQPLFAVVDTGGMVGK 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK------------KEISFPKNIDFIFIGTK 328 +D + ++ L AD++L + + +++S P + I Sbjct: 65 EDGLAGATARQARLAAAEADVVLFVVNVREGASALDDDILAWLRKLSQPTLLVINKIDGV 124 Query: 329 SDLYSTYTEEYDHL-------ISSFTGEGLEELINKIKSILSNK 365 SD +T E+ H +S+ +GL++LI ++ + L + Sbjct: 125 SD--TTVHSEFAHYGFSDVVPVSAAHRQGLDDLIEQVLAWLPER 166 >gi|325496456|gb|EGC94315.1| putative GTP-binding factor [Escherichia fergusonii ECD227] Length = 499 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G + DTAG+R+ Sbjct: 213 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 272 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D VEK + +T +E+A++++L+ I++++ IS Sbjct: 273 GKITDAVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 308 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG DT GI T+ Sbjct: 14 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 73 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 D VE +++ L +E AD++L + Sbjct: 74 DGVETRMAEQSLLAIEEADVVLFM 97 >gi|150002947|ref|YP_001297691.1| putative GTP-binding protein, putative GTPase [Bacteroides vulgatus ATCC 8482] gi|149931371|gb|ABR38069.1| putative GTP-binding protein, putative GTPase [Bacteroides vulgatus ATCC 8482] Length = 396 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 54/167 (32%), Positives = 82/167 (49%), Gaps = 20/167 (11%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDTA 275 N IV+ G N+GKSSL NAL +D A+V+DIPGTT D ++ ++++ G + I DT Sbjct: 10 NRLHIVLFGKRNSGKSSLINALTGQDTALVSDIPGTTTDAVSKAMEIQHIGPCLFI-DTP 68 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEI-NSKKEISF-----PKNIDFIFIGTKS 329 G + ++ E I RT +E D+ LLL E N + E + +NI I I K+ Sbjct: 69 GFDDEGELGEMR-ITRTLKAIERTDIALLLCEDGNCEDEKQWMEQLNKRNIPVILILNKA 127 Query: 330 DLYSTYTEEYDH----------LISSFTGEGLEELINKIKSILSNKF 366 D+ D +IS+ G+E+++ I L F Sbjct: 128 DIRKDIASTRDRIEKECGQNPLIISAKEQTGIEKILQAILEKLPADF 174 >gi|73541770|ref|YP_296290.1| GTP-binding protein EngA [Ralstonia eutropha JMP134] gi|123732900|sp|Q46ZI7|DER_RALEJ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|72119183|gb|AAZ61446.1| Small GTP-binding protein domain:GTP-binding [Ralstonia eutropha JMP134] Length = 447 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 34/100 (34%), Positives = 61/100 (61%), Gaps = 5/100 (5%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G KI I+G N GKS+L N L ++ I D+PGTTRD + ++ + G + DTAG+R Sbjct: 180 GVKIAIVGRPNVGKSTLVNTLIGEERVIAFDMPGTTRDAIYVEFERGGKPYTLIDTAGLR 239 Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + +EK + +T + +A++++LL ++++++IS Sbjct: 240 RRGKVFEAIEKFSVVKTLQSIADANVVILL--LDAQQDIS 277 Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust. Identities = 40/159 (25%), Positives = 69/159 (43%), Gaps = 28/159 (17%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN + + A+V D+PG TRD + + DT G Sbjct: 5 IALVGRPNVGKSTLFNRMTRSRDALVADLPGLTRDRHYGEGRIGDRPFIAIDTGGF---- 60 Query: 282 DIVEKEGI-----KRTFLEVENADLILL------------------LKEINSKKEISFPK 318 + V KEGI K+T V AD+++ L++ + ++ K Sbjct: 61 EPVVKEGIVAEMAKQTRQAVVEADVVIFIVDGRLGLAPQDRAIADYLRKTGRRVMLAVNK 120 Query: 319 NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINK 357 + +D Y + + IS+ G+G+ EL+++ Sbjct: 121 AEGMKYTSVAADFYELGMGD-PYAISAAHGDGVRELVDE 158 >gi|87125615|ref|ZP_01081460.1| putative GTP-binding protein [Synechococcus sp. RS9917] gi|86166915|gb|EAQ68177.1| putative GTP-binding protein [Synechococcus sp. RS9917] Length = 455 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSL NA+ + AIV+ I GTTRD + L+ G ++ DTAGIR Sbjct: 179 QMAIIGRPNVGKSSLLNAICGEPRAIVSPIRGTTRDTIDTRLERNGLSWRLVDTAGIRRR 238 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + E GI R+F +E +D+ +L+ Sbjct: 239 RSVHYGPEFFGINRSFKAIERSDVCVLV 266 Score = 43.1 bits (100), Expect = 0.087, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 31/61 (50%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+L N L + AIV D PG TRD D K+ DT G+ D Sbjct: 6 VAIIGRPNVGKSTLVNRLCRSREAIVHDEPGVTRDRTYQDGYWGDREFKLVDTGGLVFDD 65 Query: 282 D 282 D Sbjct: 66 D 66 >gi|238785325|ref|ZP_04629314.1| GTP-binding protein engA [Yersinia bercovieri ATCC 43970] gi|238713778|gb|EEQ05801.1| GTP-binding protein engA [Yersinia bercovieri ATCC 43970] Length = 494 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 48/155 (30%), Positives = 76/155 (49%), Gaps = 19/155 (12%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L A+V D PG TRD ++EG+ + DT GI T+ Sbjct: 5 IALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGHEFIVIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL---------------KEINSKKEISF--PKNIDFIF 324 D VE + ++ L +E AD++L + + + S+++ +F D I Sbjct: 65 DGVETKMAGQSLLAIEEADIVLFMVDARAGLMPADQGIAQHLRSREKATFLVANKTDGID 124 Query: 325 IGTKS-DLYSTYTEEYDHLISSFTGEGLEELINKI 358 T + D YS E H I++ G G+ +LI + Sbjct: 125 PDTATADFYSLGLGEV-HAIAASHGRGVTQLIEDV 158 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/98 (34%), Positives = 60/98 (61%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + +D +V D+PGTTRD + I + + + DTAG+R+ Sbjct: 208 KLAIVGRPNVGKSTLTNRILGEDRVVVYDLPGTTRDSIYIPMTRDEREYVLIDTAGVRKR 267 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + VEK + +T +E+++++LL+ I+++ IS Sbjct: 268 GKVTETVEKFSVIKTLQAIEDSNVVLLV--IDARDGIS 303 >gi|120554059|ref|YP_958410.1| GTP-binding protein EngA [Marinobacter aquaeolei VT8] gi|166225823|sp|A1TZQ4|DER_MARAV RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|120323908|gb|ABM18223.1| small GTP-binding protein [Marinobacter aquaeolei VT8] Length = 473 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 56/90 (62%), Gaps = 3/90 (3%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G +I ++G N GKS+L N + +D +V D+PGTTRD + I + +G+ + DTAG+R Sbjct: 176 GIRIGVVGRPNVGKSTLVNRMLGEDRVVVYDMPGTTRDSVYIPYERQGHEYTLIDTAGVR 235 Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLL 305 ++ VEK I +T +++A +++L+ Sbjct: 236 RRKNVREAVEKFSIIKTLQAIDDAHVVILV 265 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN + + A+V D PG TRD + + EG + DT G+ + Sbjct: 5 IALVGRPNVGKSTLFNQMTRSRDALVADFPGLTRDRKYGEGNYEGQKFIVIDTGGLTGDE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ E +++ VE AD++L L Sbjct: 65 AGIDAEMARQSMQAVEEADIVLFL 88 >gi|288934098|ref|YP_003438157.1| ribosome-associated GTPase EngA [Klebsiella variicola At-22] gi|290508296|ref|ZP_06547667.1| ribosome-associated GTPase EngA [Klebsiella sp. 1_1_55] gi|288888827|gb|ADC57145.1| ribosome-associated GTPase EngA [Klebsiella variicola At-22] gi|289777690|gb|EFD85687.1| ribosome-associated GTPase EngA [Klebsiella sp. 1_1_55] Length = 492 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 36/98 (36%), Positives = 62/98 (63%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + +D +V D+PGTTRD + I + + + DTAG+R+ Sbjct: 206 KLAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMQRDEREYVLIDTAGVRKR 265 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D+VEK + +T +E+A+++LL+ I++++ IS Sbjct: 266 GKITDVVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 301 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE +++ L +E AD++L + Sbjct: 65 EGVETRMAEQSLLAIEEADVVLFM 88 >gi|170681267|ref|YP_001744699.1| GTP-binding protein EngA [Escherichia coli SMS-3-5] gi|218706014|ref|YP_002413533.1| GTP-binding protein EngA [Escherichia coli UMN026] gi|293405952|ref|ZP_06649944.1| GTP-binding protein engA [Escherichia coli FVEC1412] gi|298381753|ref|ZP_06991352.1| GTP-binding protein engA [Escherichia coli FVEC1302] gi|331664074|ref|ZP_08364984.1| ribosome-associated GTPase EngA [Escherichia coli TA143] gi|226741139|sp|B7N699|DER_ECOLU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|226741140|sp|B1LNG6|DER_ECOSM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|170518985|gb|ACB17163.1| GTP-binding protein EngA [Escherichia coli SMS-3-5] gi|218433111|emb|CAR14008.1| GTPase involved in ribosome synthesis and maintenance [Escherichia coli UMN026] gi|284922461|emb|CBG35548.1| GTP-binding protein [Escherichia coli 042] gi|291428160|gb|EFF01187.1| GTP-binding protein engA [Escherichia coli FVEC1412] gi|298279195|gb|EFI20709.1| GTP-binding protein engA [Escherichia coli FVEC1302] gi|323961327|gb|EGB56939.1| ribosome GTPase EngA [Escherichia coli H489] gi|331059873|gb|EGI31850.1| ribosome-associated GTPase EngA [Escherichia coli TA143] Length = 490 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G + DTAG+R+ Sbjct: 204 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 263 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D VEK + +T +E+A++++L+ I++++ IS Sbjct: 264 GKITDAVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 299 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 D VE +++ L +E AD++L + Sbjct: 65 DGVETRMAEQSLLAIEEADVVLFM 88 >gi|162138394|ref|YP_541823.2| GTP-binding protein EngA [Escherichia coli UTI89] gi|218559437|ref|YP_002392350.1| GTP-binding protein EngA [Escherichia coli S88] gi|218690631|ref|YP_002398843.1| GTP-binding protein EngA [Escherichia coli ED1a] gi|306814419|ref|ZP_07448581.1| GTP-binding protein EngA [Escherichia coli NC101] gi|226741136|sp|B7MHZ6|DER_ECO45 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|254783154|sp|B7MYE6|DER_ECO81 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|218366206|emb|CAR03954.1| GTPase involved in ribosome synthesis and maintenance [Escherichia coli S88] gi|218428195|emb|CAR09112.2| GTPase involved in ribosome synthesis and maintenance [Escherichia coli ED1a] gi|222034222|emb|CAP76963.1| GTP-binding protein engA [Escherichia coli LF82] gi|294491525|gb|ADE90281.1| ribosome-associated GTPase EngA [Escherichia coli IHE3034] gi|305851813|gb|EFM52265.1| GTP-binding protein EngA [Escherichia coli NC101] gi|307625933|gb|ADN70237.1| GTP-binding protein EngA [Escherichia coli UM146] gi|312947088|gb|ADR27915.1| GTP-binding protein EngA [Escherichia coli O83:H1 str. NRG 857C] gi|323949171|gb|EGB45062.1| ribosome GTPase EngA [Escherichia coli H252] gi|323955752|gb|EGB51510.1| ribosome GTPase EngA [Escherichia coli H263] Length = 490 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G + DTAG+R+ Sbjct: 204 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 263 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D VEK + +T +E+A++++L+ I++++ IS Sbjct: 264 GKITDAVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 299 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 50/89 (56%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310 D VE +++ L +E AD++L + + S Sbjct: 65 DGVETRMAEQSLLAIEEADVVLFMVDARS 93 >gi|300820819|ref|ZP_07100969.1| ribosome-associated GTPase EngA [Escherichia coli MS 119-7] gi|300927126|ref|ZP_07142874.1| ribosome-associated GTPase EngA [Escherichia coli MS 182-1] gi|300930151|ref|ZP_07145572.1| ribosome-associated GTPase EngA [Escherichia coli MS 187-1] gi|300951784|ref|ZP_07165599.1| ribosome-associated GTPase EngA [Escherichia coli MS 116-1] gi|300958859|ref|ZP_07170967.1| ribosome-associated GTPase EngA [Escherichia coli MS 175-1] gi|301302868|ref|ZP_07208996.1| ribosome-associated GTPase EngA [Escherichia coli MS 124-1] gi|301330398|ref|ZP_07223040.1| ribosome-associated GTPase EngA [Escherichia coli MS 78-1] gi|301648266|ref|ZP_07248009.1| ribosome-associated GTPase EngA [Escherichia coli MS 146-1] gi|309794442|ref|ZP_07688865.1| ribosome-associated GTPase EngA [Escherichia coli MS 145-7] gi|300314511|gb|EFJ64295.1| ribosome-associated GTPase EngA [Escherichia coli MS 175-1] gi|300416896|gb|EFK00207.1| ribosome-associated GTPase EngA [Escherichia coli MS 182-1] gi|300448981|gb|EFK12601.1| ribosome-associated GTPase EngA [Escherichia coli MS 116-1] gi|300461957|gb|EFK25450.1| ribosome-associated GTPase EngA [Escherichia coli MS 187-1] gi|300526572|gb|EFK47641.1| ribosome-associated GTPase EngA [Escherichia coli MS 119-7] gi|300841803|gb|EFK69563.1| ribosome-associated GTPase EngA [Escherichia coli MS 124-1] gi|300843627|gb|EFK71387.1| ribosome-associated GTPase EngA [Escherichia coli MS 78-1] gi|301073653|gb|EFK88459.1| ribosome-associated GTPase EngA [Escherichia coli MS 146-1] gi|308121898|gb|EFO59160.1| ribosome-associated GTPase EngA [Escherichia coli MS 145-7] gi|315256531|gb|EFU36499.1| ribosome-associated GTPase EngA [Escherichia coli MS 85-1] gi|324020071|gb|EGB89290.1| ribosome-associated GTPase EngA [Escherichia coli MS 117-3] Length = 499 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G + DTAG+R+ Sbjct: 213 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 272 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D VEK + +T +E+A++++L+ I++++ IS Sbjct: 273 GKITDAVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 308 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG DT GI T+ Sbjct: 14 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 73 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 D VE +++ L +E AD++L + Sbjct: 74 DGVETRMAEQSLLAIEEADVVLFM 97 >gi|218548052|ref|YP_002381843.1| GTP-binding protein EngA [Escherichia fergusonii ATCC 35469] gi|331684159|ref|ZP_08384755.1| ribosome-associated GTPase EngA [Escherichia coli H299] gi|226741141|sp|B7LKC7|DER_ESCF3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|218355593|emb|CAQ88204.1| GTPase involved in ribosome synthesis and maintenance [Escherichia fergusonii ATCC 35469] gi|323967959|gb|EGB63371.1| ribosome GTPase EngA [Escherichia coli M863] gi|327252218|gb|EGE63890.1| small GTP-binding domain protein [Escherichia coli STEC_7v] gi|331079111|gb|EGI50313.1| ribosome-associated GTPase EngA [Escherichia coli H299] Length = 490 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G + DTAG+R+ Sbjct: 204 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 263 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D VEK + +T +E+A++++L+ I++++ IS Sbjct: 264 GKITDAVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 299 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 D VE +++ L +E AD++L + Sbjct: 65 DGVETRMAEQSLLAIEEADVVLFM 88 >gi|333002306|gb|EGK21870.1| small GTP-binding domain protein [Shigella flexneri K-272] gi|333016129|gb|EGK35461.1| small GTP-binding domain protein [Shigella flexneri K-227] Length = 490 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G + DTAG+R+ Sbjct: 204 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 263 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D VEK + +T +E+A++++L+ I++++ IS Sbjct: 264 GKITDAVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 299 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 D VE +++ L +E AD++L + Sbjct: 65 DGVETRMAEQSLLAIEEADVVLFM 88 >gi|332087958|gb|EGI93083.1| small GTP-binding domain protein [Shigella boydii 5216-82] Length = 490 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G + DTAG+R+ Sbjct: 204 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 263 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D VEK + +T +E+A++++L+ I++++ IS Sbjct: 264 GKITDAVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 299 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 D VE +++ L +E AD++L + Sbjct: 65 DGVETRMAEQSLLAIEEADVVLFM 88 >gi|324113005|gb|EGC06981.1| ribosome GTPase EngA [Escherichia fergusonii B253] Length = 490 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G + DTAG+R+ Sbjct: 204 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 263 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D VEK + +T +E+A++++L+ I++++ IS Sbjct: 264 GKITDAVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 299 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 D VE +++ L +E AD++L + Sbjct: 65 DGVETRMAEQSLLAIEEADVVLFM 88 >gi|323977306|gb|EGB72392.1| ribosome GTPase EngA [Escherichia coli TW10509] Length = 490 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G + DTAG+R+ Sbjct: 204 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 263 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D VEK + +T +E+A++++L+ I++++ IS Sbjct: 264 GKITDAVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 299 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 D VE +++ L +E AD++L + Sbjct: 65 DGVETRMAEQSLLAIEEADVVLFM 88 >gi|110642676|ref|YP_670406.1| GTP-binding protein EngA [Escherichia coli 536] gi|161486155|ref|NP_754915.2| GTP-binding protein EngA [Escherichia coli CFT073] gi|191172582|ref|ZP_03034121.1| ribosome-associated GTPase EngA [Escherichia coli F11] gi|218701021|ref|YP_002408650.1| GTP-binding protein EngA [Escherichia coli IAI39] gi|312965427|ref|ZP_07779659.1| small GTP-binding domain protein [Escherichia coli 2362-75] gi|31563151|sp|Q8FF59|DER_ECOL6 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|123147831|sp|Q0TEX4|DER_ECOL5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|226741137|sp|B7NQW0|DER_ECO7I RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|110344268|gb|ABG70505.1| probable GTP-binding protein EngA [Escherichia coli 536] gi|190907055|gb|EDV66655.1| ribosome-associated GTPase EngA [Escherichia coli F11] gi|218371007|emb|CAR18835.1| GTPase involved in ribosome synthesis and maintenance [Escherichia coli IAI39] gi|281179565|dbj|BAI55895.1| putative GTP-binding protein [Escherichia coli SE15] gi|307554534|gb|ADN47309.1| GTP-binding protein EngA [Escherichia coli ABU 83972] gi|312289847|gb|EFR17735.1| small GTP-binding domain protein [Escherichia coli 2362-75] gi|320196348|gb|EFW70972.1| GTP-binding protein EngA [Escherichia coli WV_060327] gi|323188371|gb|EFZ73663.1| small GTP-binding domain protein [Escherichia coli RN587/1] gi|330912286|gb|EGH40796.1| GTP-binding protein EngA [Escherichia coli AA86] Length = 490 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G + DTAG+R+ Sbjct: 204 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 263 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D VEK + +T +E+A++++L+ I++++ IS Sbjct: 264 GKITDAVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 299 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 D VE +++ L +E AD++L + Sbjct: 65 DGVETRMAEQSLLAIEEADVVLFM 88 >gi|113474219|ref|YP_720280.1| GTP-binding protein EngA [Trichodesmium erythraeum IMS101] gi|123161345|sp|Q119L7|DER_TRIEI RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|110165267|gb|ABG49807.1| small GTP-binding protein [Trichodesmium erythraeum IMS101] Length = 453 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 39/111 (35%), Positives = 65/111 (58%), Gaps = 6/111 (5%) Query: 199 LKNDISSHI-SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257 L +D+ +++ +QG++ E N KI I+G N GKSSL N+ + AIV+ I GTTRD Sbjct: 157 LLDDLITYLPTQGEITET--NQTKIAIVGRPNVGKSSLLNSFIGEKRAIVSPISGTTRDA 214 Query: 258 LTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305 + ++ G ++ DTAGIR+ ++ E GI R F + A++++ + Sbjct: 215 IDTVVERNGKTYRLIDTAGIRKKKNVEYGAEFFGINRAFKAIRRAEVVMFV 265 Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 31/56 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 + I+G N GKS++ N LA+ AIV D PG TRD + E ++ DT G+ Sbjct: 6 VAIIGRPNVGKSTIVNRLAESKDAIVHDEPGITRDRTYRNAYWEDREFQVVDTGGL 61 >gi|320185211|gb|EFW59991.1| GTP-binding protein EngA [Shigella flexneri CDC 796-83] gi|332092745|gb|EGI97814.1| small GTP-binding domain protein [Shigella boydii 3594-74] Length = 490 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G + DTAG+R+ Sbjct: 204 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 263 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D VEK + +T +E+A++++L+ I++++ IS Sbjct: 264 GKITDAVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 299 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 D VE +++ L +E AD++L + Sbjct: 65 DGVETRMAEQSLLAIEEADVVLFM 88 >gi|89109317|ref|AP_003097.1| predicted GTP-binding protein [Escherichia coli str. K-12 substr. W3110] gi|90111450|ref|NP_417006.2| GTPase; multicopy suppressor of ftsJ [Escherichia coli str. K-12 substr. MG1655] gi|157156728|ref|YP_001463833.1| GTP-binding protein EngA [Escherichia coli E24377A] gi|157161986|ref|YP_001459304.1| GTP-binding protein EngA [Escherichia coli HS] gi|161367551|ref|NP_289064.2| GTP-binding protein EngA [Escherichia coli O157:H7 EDL933] gi|162139766|ref|NP_311400.2| GTP-binding protein EngA [Escherichia coli O157:H7 str. Sakai] gi|168748430|ref|ZP_02773452.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC4113] gi|168756283|ref|ZP_02781290.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC4401] gi|168761121|ref|ZP_02786128.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC4501] gi|168768603|ref|ZP_02793610.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC4486] gi|168773575|ref|ZP_02798582.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC4196] gi|168778477|ref|ZP_02803484.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC4076] gi|168787857|ref|ZP_02812864.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC869] gi|168798882|ref|ZP_02823889.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC508] gi|170019206|ref|YP_001724160.1| GTP-binding protein EngA [Escherichia coli ATCC 8739] gi|170082121|ref|YP_001731441.1| GTP-binding protein [Escherichia coli str. K-12 substr. DH10B] gi|188494621|ref|ZP_03001891.1| GTP-binding protein EngA [Escherichia coli 53638] gi|191167672|ref|ZP_03029481.1| ribosome-associated GTPase EngA [Escherichia coli B7A] gi|193064026|ref|ZP_03045111.1| ribosome-associated GTPase EngA [Escherichia coli E22] gi|194427302|ref|ZP_03059852.1| ribosome-associated GTPase EngA [Escherichia coli B171] gi|194437572|ref|ZP_03069668.1| ribosome-associated GTPase EngA [Escherichia coli 101-1] gi|195936653|ref|ZP_03082035.1| GTP-binding protein EngA [Escherichia coli O157:H7 str. EC4024] gi|208814338|ref|ZP_03255667.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC4045] gi|208821434|ref|ZP_03261754.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC4042] gi|209399678|ref|YP_002271981.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC4115] gi|209919988|ref|YP_002294072.1| GTP-binding protein EngA [Escherichia coli SE11] gi|217326913|ref|ZP_03442996.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. TW14588] gi|218555036|ref|YP_002387949.1| GTP-binding protein EngA [Escherichia coli IAI1] gi|218696138|ref|YP_002403805.1| GTP-binding protein EngA [Escherichia coli 55989] gi|238901676|ref|YP_002927472.1| putative GTP-binding protein [Escherichia coli BW2952] gi|253772595|ref|YP_003035426.1| GTP-binding protein EngA [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162485|ref|YP_003045593.1| GTP-binding protein EngA [Escherichia coli B str. REL606] gi|254794457|ref|YP_003079294.1| GTP-binding protein EngA [Escherichia coli O157:H7 str. TW14359] gi|256017341|ref|ZP_05431206.1| GTP-binding protein EngA [Shigella sp. D9] gi|256021803|ref|ZP_05435668.1| GTP-binding protein EngA [Escherichia sp. 4_1_40B] gi|260845141|ref|YP_003222919.1| putative GTP-binding protein Der [Escherichia coli O103:H2 str. 12009] gi|260856605|ref|YP_003230496.1| putative GTP-binding protein Der [Escherichia coli O26:H11 str. 11368] gi|260869200|ref|YP_003235602.1| putative GTP-binding protein Der [Escherichia coli O111:H- str. 11128] gi|261223057|ref|ZP_05937338.1| 50S ribosome associated factor involved in the biogenesis and stability of 50S ribosomal subunits [Escherichia coli O157:H7 str. FRIK2000] gi|261259392|ref|ZP_05951925.1| putative GTP-binding protein Der [Escherichia coli O157:H7 str. FRIK966] gi|291283732|ref|YP_003500550.1| GTP-binding protein engA [Escherichia coli O55:H7 str. CB9615] gi|293415776|ref|ZP_06658419.1| ribosome-associated GTPase EngA [Escherichia coli B185] gi|293446864|ref|ZP_06663286.1| ribosome-associated GTPase EngA [Escherichia coli B088] gi|301022369|ref|ZP_07186258.1| ribosome-associated GTPase EngA [Escherichia coli MS 196-1] gi|307139146|ref|ZP_07498502.1| GTP-binding protein EngA [Escherichia coli H736] gi|307312494|ref|ZP_07592127.1| ribosome-associated GTPase EngA [Escherichia coli W] gi|312973248|ref|ZP_07787420.1| small GTP-binding domain protein [Escherichia coli 1827-70] gi|331669257|ref|ZP_08370105.1| ribosome-associated GTPase EngA [Escherichia coli TA271] gi|68566316|sp|P0A6P5|DER_ECOLI RecName: Full=GTPase Der; AltName: Full=Double era-like domain protein; AltName: Full=GTP-binding protein EngA gi|68566317|sp|P0A6P6|DER_ECO57 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|166920098|sp|A7ZPV4|DER_ECO24 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|166920099|sp|A8A317|DER_ECOHS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|189037147|sp|B1IWF0|DER_ECOLC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|226741138|sp|B7M7L5|DER_ECO8A RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|229784133|sp|B1XAY6|DER_ECODH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|238058973|sp|B5Z0Y0|DER_ECO5E RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|238058974|sp|B6I583|DER_ECOSE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|254783153|sp|B7LCQ1|DER_ECO55 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|259645873|sp|C4ZX86|DER_ECOBW RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|85675433|dbj|BAA16397.2| predicted GTP-binding protein [Escherichia coli str. K12 substr. W3110] gi|87082120|gb|AAC75564.2| GTPase; multicopy suppressor of ftsJ [Escherichia coli str. K-12 substr. MG1655] gi|157067666|gb|ABV06921.1| GTP-binding protein EngA [Escherichia coli HS] gi|157078758|gb|ABV18466.1| GTP-binding protein EngA [Escherichia coli E24377A] gi|169754134|gb|ACA76833.1| small GTP-binding protein [Escherichia coli ATCC 8739] gi|169889956|gb|ACB03663.1| predicted GTP-binding protein [Escherichia coli str. K-12 substr. DH10B] gi|187770576|gb|EDU34420.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC4196] gi|188017037|gb|EDU55159.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC4113] gi|188489820|gb|EDU64923.1| GTP-binding protein EngA [Escherichia coli 53638] gi|189003270|gb|EDU72256.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC4076] gi|189356591|gb|EDU75010.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC4401] gi|189362188|gb|EDU80607.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC4486] gi|189368460|gb|EDU86876.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC4501] gi|189372347|gb|EDU90763.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC869] gi|189378586|gb|EDU97002.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC508] gi|190902271|gb|EDV62011.1| ribosome-associated GTPase EngA [Escherichia coli B7A] gi|192929261|gb|EDV82870.1| ribosome-associated GTPase EngA [Escherichia coli E22] gi|194414623|gb|EDX30895.1| ribosome-associated GTPase EngA [Escherichia coli B171] gi|194423378|gb|EDX39369.1| ribosome-associated GTPase EngA [Escherichia coli 101-1] gi|208735615|gb|EDZ84302.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC4045] gi|208741557|gb|EDZ89239.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC4042] gi|209161078|gb|ACI38511.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC4115] gi|209913247|dbj|BAG78321.1| putative GTP-binding protein [Escherichia coli SE11] gi|217319280|gb|EEC27705.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. TW14588] gi|218352870|emb|CAU98669.1| GTPase involved in ribosome synthesis and maintenance [Escherichia coli 55989] gi|218361804|emb|CAQ99403.1| GTPase involved in ribosome synthesis and maintenance [Escherichia coli IAI1] gi|238862452|gb|ACR64450.1| predicted GTP-binding protein [Escherichia coli BW2952] gi|242378109|emb|CAQ32882.1| 50S ribosomal subunit stability factor [Escherichia coli BL21(DE3)] gi|253323639|gb|ACT28241.1| small GTP-binding protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974386|gb|ACT40057.1| GTP-binding protein EngA [Escherichia coli B str. REL606] gi|253978553|gb|ACT44223.1| GTP-binding protein EngA [Escherichia coli BL21(DE3)] gi|254593857|gb|ACT73218.1| 50S ribosome associated factor involved in the biogenesis and stability of 50S ribosomal subunits [Escherichia coli O157:H7 str. TW14359] gi|257755254|dbj|BAI26756.1| predicted GTP-binding protein Der [Escherichia coli O26:H11 str. 11368] gi|257760288|dbj|BAI31785.1| predicted GTP-binding protein Der [Escherichia coli O103:H2 str. 12009] gi|257765556|dbj|BAI37051.1| predicted GTP-binding protein Der [Escherichia coli O111:H- str. 11128] gi|260448409|gb|ACX38831.1| small GTP-binding protein [Escherichia coli DH1] gi|290763605|gb|ADD57566.1| GTP-binding protein engA [Escherichia coli O55:H7 str. CB9615] gi|291323694|gb|EFE63122.1| ribosome-associated GTPase EngA [Escherichia coli B088] gi|291433424|gb|EFF06403.1| ribosome-associated GTPase EngA [Escherichia coli B185] gi|299881282|gb|EFI89493.1| ribosome-associated GTPase EngA [Escherichia coli MS 196-1] gi|306907417|gb|EFN37921.1| ribosome-associated GTPase EngA [Escherichia coli W] gi|309702843|emb|CBJ02174.1| GTP-binding protein [Escherichia coli ETEC H10407] gi|310331843|gb|EFP99078.1| small GTP-binding domain protein [Escherichia coli 1827-70] gi|315061830|gb|ADT76157.1| predicted GTP-binding protein [Escherichia coli W] gi|315137135|dbj|BAJ44294.1| GTP-binding protein engA [Escherichia coli DH1] gi|315615770|gb|EFU96402.1| small GTP-binding domain protein [Escherichia coli 3431] gi|320180501|gb|EFW55432.1| GTP-binding protein EngA [Shigella boydii ATCC 9905] gi|320188844|gb|EFW63503.1| GTP-binding protein EngA [Escherichia coli O157:H7 str. EC1212] gi|320200075|gb|EFW74664.1| GTP-binding protein EngA [Escherichia coli EC4100B] gi|320640855|gb|EFX10343.1| GTP-binding protein Der [Escherichia coli O157:H7 str. G5101] gi|320646298|gb|EFX15225.1| GTP-binding protein Der [Escherichia coli O157:H- str. 493-89] gi|320651803|gb|EFX20183.1| GTP-binding protein Der [Escherichia coli O157:H- str. H 2687] gi|320657189|gb|EFX24998.1| GTP-binding protein Der [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320662795|gb|EFX30127.1| GTP-binding protein Der [Escherichia coli O55:H7 str. USDA 5905] gi|320667599|gb|EFX34514.1| GTP-binding protein Der [Escherichia coli O157:H7 str. LSU-61] gi|323156165|gb|EFZ42324.1| small GTP-binding domain protein [Escherichia coli EPECa14] gi|323159381|gb|EFZ45366.1| small GTP-binding domain protein [Escherichia coli E128010] gi|323170218|gb|EFZ55871.1| small GTP-binding domain protein [Escherichia coli LT-68] gi|323177365|gb|EFZ62953.1| small GTP-binding domain protein [Escherichia coli 1180] gi|323184428|gb|EFZ69803.1| small GTP-binding domain protein [Escherichia coli 1357] gi|323377589|gb|ADX49857.1| ribosome-associated GTPase EngA [Escherichia coli KO11] gi|323936404|gb|EGB32694.1| ribosome-associated GTPase EngA [Escherichia coli E1520] gi|323941227|gb|EGB37412.1| ribosome GTPase EngA [Escherichia coli E482] gi|323944733|gb|EGB40800.1| ribosome-associated GTPase EngA [Escherichia coli H120] gi|323971076|gb|EGB66324.1| ribosome GTPase EngA [Escherichia coli TA007] gi|324118145|gb|EGC12042.1| ribosome GTPase EngA [Escherichia coli E1167] gi|326340309|gb|EGD64113.1| GTP-binding protein EngA [Escherichia coli O157:H7 str. 1125] gi|326344993|gb|EGD68737.1| GTP-binding protein EngA [Escherichia coli O157:H7 str. 1044] gi|331064451|gb|EGI36362.1| ribosome-associated GTPase EngA [Escherichia coli TA271] gi|332344383|gb|AEE57717.1| conserved hypothetical protein [Escherichia coli UMNK88] gi|333000699|gb|EGK20275.1| small GTP-binding domain protein [Shigella flexneri VA-6] Length = 490 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G + DTAG+R+ Sbjct: 204 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 263 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D VEK + +T +E+A++++L+ I++++ IS Sbjct: 264 GKITDAVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 299 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 D VE +++ L +E AD++L + Sbjct: 65 DGVETRMAEQSLLAIEEADVVLFM 88 >gi|300904315|ref|ZP_07122172.1| ribosome-associated GTPase EngA [Escherichia coli MS 84-1] gi|300403747|gb|EFJ87285.1| ribosome-associated GTPase EngA [Escherichia coli MS 84-1] Length = 492 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G + DTAG+R+ Sbjct: 213 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 272 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D VEK + +T +E+A++++L+ I++++ IS Sbjct: 273 GKITDAVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 308 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG DT GI T+ Sbjct: 14 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 73 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 D VE +++ L +E AD++L + Sbjct: 74 DGVETRMAEQSLLAIEEADVVLFM 97 >gi|238753871|ref|ZP_04615231.1| GTP-binding protein engA [Yersinia ruckeri ATCC 29473] gi|238707859|gb|EEQ00217.1| GTP-binding protein engA [Yersinia ruckeri ATCC 29473] Length = 496 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 74/155 (47%), Gaps = 19/155 (12%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L A+V D PG TRD ++EG+ + DT GI T+ Sbjct: 5 IALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGHEFIVIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL---------------KEINSKKEISF---PKNIDFI 323 D VE ++ L +E AD++L + + + S+++ +F K Sbjct: 65 DGVETRMAGQSLLAIEEADIVLFMVDARAGLMPADQGIAQHLRSRQKATFLVANKTDGME 124 Query: 324 FIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKI 358 +D YS E H I++ G G+ +LI ++ Sbjct: 125 PEAAAADFYSLGMGEV-HPIAASHGRGVAQLIEEV 158 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 60/98 (61%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I + + + DTAG+R+ Sbjct: 211 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMIRDEREYILIDTAGVRKR 270 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + VEK + +T +E+++++LL+ I+++ IS Sbjct: 271 GKVTETVEKFSVIKTLQAIEDSNVVLLV--IDARDGIS 306 >gi|215487861|ref|YP_002330292.1| GTP-binding protein EngA [Escherichia coli O127:H6 str. E2348/69] gi|254783152|sp|B7UGV7|DER_ECO27 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|215265933|emb|CAS10342.1| predicted GTP-binding protein [Escherichia coli O127:H6 str. E2348/69] Length = 490 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G + DTAG+R+ Sbjct: 204 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 263 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D VEK + +T +E+A++++L+ I++++ IS Sbjct: 264 GKITDAVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 299 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 D VE +++ L +E AD++L + Sbjct: 65 DGVETRMAEQSLLAIEEADVVLFM 88 >gi|161950068|ref|YP_404245.2| GTP-binding protein EngA [Shigella dysenteriae Sd197] gi|309784738|ref|ZP_07679371.1| small GTP-binding domain protein [Shigella dysenteriae 1617] gi|308927108|gb|EFP72582.1| small GTP-binding domain protein [Shigella dysenteriae 1617] Length = 490 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G + DTAG+R+ Sbjct: 204 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 263 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D VEK + +T +E+A++++L+ I++++ IS Sbjct: 264 GKITDAVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 299 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 D VE +++ L +E AD++L + Sbjct: 65 DGVETRMAEQSLLAIEEADVVLFM 88 >gi|152971372|ref|YP_001336481.1| GTP-binding protein EngA [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238895966|ref|YP_002920702.1| GTP-binding protein EngA [Klebsiella pneumoniae NTUH-K2044] gi|262040248|ref|ZP_06013499.1| ribosome-associated GTPase EngA [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330007822|ref|ZP_08306080.1| ribosome biogenesis GTPase Der [Klebsiella sp. MS 92-3] gi|166198723|sp|A6TCD0|DER_KLEP7 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|150956221|gb|ABR78251.1| GTP-binding protein EngA [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238548284|dbj|BAH64635.1| GTP-binding protein EngA [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259042357|gb|EEW43377.1| ribosome-associated GTPase EngA [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328535310|gb|EGF61796.1| ribosome biogenesis GTPase Der [Klebsiella sp. MS 92-3] Length = 492 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 36/98 (36%), Positives = 62/98 (63%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + +D +V D+PGTTRD + I + + + DTAG+R+ Sbjct: 206 KLAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMQRDEREYVLIDTAGVRKR 265 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D+VEK + +T +E+A+++LL+ I++++ IS Sbjct: 266 GKITDVVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 301 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE +++ L +E AD++L + Sbjct: 65 EGVETRMAEQSLLAIEEADVVLFM 88 >gi|56480123|ref|NP_708350.2| GTP-binding protein EngA [Shigella flexneri 2a str. 301] gi|161984887|ref|YP_408907.2| GTP-binding protein EngA [Shigella boydii Sb227] gi|56383674|gb|AAN44057.2| putative GTP-binding factor [Shigella flexneri 2a str. 301] Length = 490 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G + DTAG+R+ Sbjct: 204 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 263 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D VEK + +T +E+A++++L+ I++++ IS Sbjct: 264 GKITDAVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 299 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 D VE +++ L +E AD++L + Sbjct: 65 DGVETRMAEQSLLAIEEADVVLFM 88 >gi|30063903|ref|NP_838074.1| GTP-binding protein EngA [Shigella flexneri 2a str. 2457T] gi|110806442|ref|YP_689962.1| GTP-binding protein EngA [Shigella flexneri 5 str. 8401] gi|123146827|sp|Q0T208|DER_SHIF8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|30042158|gb|AAP17884.1| putative GTP-binding factor [Shigella flexneri 2a str. 2457T] gi|110615990|gb|ABF04657.1| putative GTP-binding factor [Shigella flexneri 5 str. 8401] gi|281601913|gb|ADA74897.1| GTP-binding protein engA [Shigella flexneri 2002017] gi|313650997|gb|EFS15397.1| small GTP-binding domain protein [Shigella flexneri 2a str. 2457T] gi|332754198|gb|EGJ84566.1| small GTP-binding domain protein [Shigella flexneri 4343-70] gi|332755561|gb|EGJ85925.1| small GTP-binding domain protein [Shigella flexneri K-671] gi|332756305|gb|EGJ86656.1| small GTP-binding domain protein [Shigella flexneri 2747-71] gi|332766344|gb|EGJ96554.1| small GTP-binding domain protein [Shigella flexneri 2930-71] gi|333001904|gb|EGK21470.1| small GTP-binding domain protein [Shigella flexneri K-218] gi|333016427|gb|EGK35758.1| small GTP-binding domain protein [Shigella flexneri K-304] Length = 490 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G + DTAG+R+ Sbjct: 204 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 263 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D VEK + +T +E+A++++L+ I++++ IS Sbjct: 264 GKITDAVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 299 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 D VE +++ L +E AD++L + Sbjct: 65 DGVETRMAEQSLLAIEEADVVLFM 88 >gi|193068430|ref|ZP_03049393.1| ribosome-associated GTPase EngA [Escherichia coli E110019] gi|192958382|gb|EDV88822.1| ribosome-associated GTPase EngA [Escherichia coli E110019] Length = 490 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G + DTAG+R+ Sbjct: 204 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 263 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D VEK + +T +E+A++++L+ I++++ IS Sbjct: 264 GKITDAVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 299 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 D VE +++ L +E AD++L + Sbjct: 65 DGVETRMAEQSLLAIEEADVVLFM 88 >gi|194432132|ref|ZP_03064421.1| ribosome-associated GTPase EngA [Shigella dysenteriae 1012] gi|194419661|gb|EDX35741.1| ribosome-associated GTPase EngA [Shigella dysenteriae 1012] gi|332089695|gb|EGI94796.1| small GTP-binding domain protein [Shigella dysenteriae 155-74] Length = 490 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G + DTAG+R+ Sbjct: 204 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 263 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D VEK + +T +E+A++++L+ I++++ IS Sbjct: 264 GKITDAVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 299 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 D VE +++ L +E AD++L + Sbjct: 65 DGVETRMAEQSLLAIEEADVVLFM 88 >gi|257465498|ref|ZP_05629869.1| GTP-binding protein EngA [Actinobacillus minor 202] gi|257451158|gb|EEV25201.1| GTP-binding protein EngA [Actinobacillus minor 202] Length = 510 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 36/98 (36%), Positives = 62/98 (63%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G I DTAG+R+ Sbjct: 223 KIAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGQHYTIIDTAGVRKR 282 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + VEK + +T +++A+++LL I++++ IS Sbjct: 283 GKVNLAVEKFSVIKTLQAIQDANVVLLT--IDAREGIS 318 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 51/84 (60%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++ GY + DT GI ++ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANIGGYDFIVIDTGGIDGSE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE++ +++ L +E AD++L L Sbjct: 65 EGVEEKMAEQSLLAIEEADVVLFL 88 >gi|253996245|ref|YP_003048309.1| GTP-binding protein EngA [Methylotenera mobilis JLW8] gi|253982924|gb|ACT47782.1| small GTP-binding protein [Methylotenera mobilis JLW8] Length = 484 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 54/88 (61%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L NAL ++ I D PGTTRD + IDL+ G + DTAG+R+ Sbjct: 181 KVAIVGRPNVGKSTLVNALLGEERVIAYDEPGTTRDSIHIDLEKNGKHYTLIDTAGVRKR 240 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +EK + +T +E A++++L+ Sbjct: 241 GRVFEAIEKFSVIKTIQAIEEANVVILV 268 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/105 (36%), Positives = 58/105 (55%), Gaps = 10/105 (9%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV---LTIDLDLEGYLVKISDTAGIR 278 IV++G N GKS+LFN L K A+V D+PG TRD I + YLV DT G Sbjct: 5 IVLVGRPNVGKSTLFNRLTKTRDALVADLPGLTRDRHYGRGIGAS-QPYLV--VDTGGFE 61 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF 322 TD + K K+T ++ AD I+ L ++ ++ +S P++++ Sbjct: 62 PHTDSGILKAMAKQTLQAIDEADAIIFL--VDGRQGVS-PQDMEI 103 >gi|261880032|ref|ZP_06006459.1| ribosome-associated GTPase EngA [Prevotella bergensis DSM 17361] gi|270333272|gb|EFA44058.1| ribosome-associated GTPase EngA [Prevotella bergensis DSM 17361] Length = 437 Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G NAGKSSL NA +D IVT+I GTTRD + D G+ + DTAGIR Sbjct: 177 RFAVVGRPNAGKSSLVNAFIGEDRHIVTEIAGTTRDSIYTRFDKFGFDFYLVDTAGIRRK 236 Query: 281 DDIVEK---EGIKRTFLEVENADLILLL 305 + + E + R+ +EN+D+ +L+ Sbjct: 237 NKVTEDLEFYSVMRSIRAIENSDVCILM 264 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/90 (38%), Positives = 51/90 (56%), Gaps = 1/90 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 + I+G N GKS+LFN L + AIV+DI GTTRD + G I DT G + ++ Sbjct: 5 VAIVGRPNVGKSTLFNRLTRTRHAIVSDIAGTTRDRQYGKCNWNGREFSIVDTGGWVVKS 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310 DDI E ++ + + ADLIL L ++ + Sbjct: 65 DDIFEDAIRQQVRIASDEADLILFLVDVET 94 >gi|269118862|ref|YP_003307039.1| small GTP-binding protein [Sebaldella termitidis ATCC 33386] gi|268612740|gb|ACZ07108.1| small GTP-binding protein [Sebaldella termitidis ATCC 33386] Length = 440 Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 36/87 (41%), Positives = 51/87 (58%), Gaps = 3/87 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--- 278 I +LG NAGKSSL N + K+ +IV+DI GTTRD + D + +I DTAGIR Sbjct: 178 IAVLGRPNAGKSSLVNKILNKERSIVSDIAGTTRDSIDSDFRYKNRKYRIIDTAGIRRKS 237 Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL 305 + DD +E + R + AD+ +L+ Sbjct: 238 KIDDSIEYYSVLRAIKAINRADVCVLM 264 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 50/85 (58%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFN L + ++IV D+PG TRD L D++ G + DT G+ +T Sbjct: 5 VAIVGRPNVGKSTLFNKLIGERLSIVKDVPGVTRDRLYRDVEWSGKEFTLVDTGGLEPKT 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 D + + + + ++ AD+++ L Sbjct: 65 QDFIMSKIKDQAQVAIDEADVVVFL 89 >gi|220906981|ref|YP_002482292.1| GTP-binding protein EngA [Cyanothece sp. PCC 7425] gi|254783149|sp|B8HQE1|DER_CYAP4 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|219863592|gb|ACL43931.1| small GTP-binding protein [Cyanothece sp. PCC 7425] Length = 453 Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 34/87 (39%), Positives = 54/87 (62%), Gaps = 3/87 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKSSL NA+ + AIV+ I GTTRD + ++ +G ++ DTAGIR+ Sbjct: 180 VAIVGRPNVGKSSLLNAVVGEQRAIVSPISGTTRDAIDTLVERDGQRYRLIDTAGIRKQK 239 Query: 282 DI---VEKEGIKRTFLEVENADLILLL 305 ++ E GI R F ++ A+++LL+ Sbjct: 240 NVDYGPEFFGINRAFKAIQRAEVVLLV 266 Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust. Identities = 19/35 (54%), Positives = 23/35 (65%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 + I+G N GKS+L N L + VAIV D PG TRD Sbjct: 6 VAIVGRPNVGKSTLVNRLTGERVAIVHDQPGVTRD 40 >gi|29840678|ref|NP_829784.1| GTP-binding protein EngA [Chlamydophila caviae GPIC] gi|33301057|sp|Q821L7|DER_CHLCV RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|29835028|gb|AAP05662.1| GTP-binding protein [Chlamydophila caviae GPIC] Length = 474 Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 45/144 (31%), Positives = 73/144 (50%), Gaps = 14/144 (9%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RE 279 +I ILG N GKSSLFN + K+ +AIV GTTRD L ++ V++ DT G+ ++ Sbjct: 3 RIAILGRPNVGKSSLFNRMCKRSLAIVNSQEGTTRDRLYGEIRGWSVPVQVIDTGGVDKD 62 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDL 331 ++D +K K+ AD++LL+ +I ++ P N I + K+D Sbjct: 63 SEDHFQKHIYKQALAGANEADILLLVVDIRCGITEQDAELAKMLLPLNKPLILVANKAD- 121 Query: 332 YSTYTEEYDHLISSFTGEGLEELI 355 T+ +E H I G+ E++ Sbjct: 122 --TFKDE--HRIHELYKLGISEIL 141 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI ++G N GKSS+ N L ++ I+ ++PGTTRD + I DTAG+R+ Sbjct: 213 KIALIGRPNVGKSSIINGLLNEERCIIDNVPGTTRDNVDILYSHNDRSYLFIDTAGLRKM 272 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E RT + AD+ LL+ Sbjct: 273 KSVKNSIEWISSSRTEKAIARADVCLLV 300 >gi|255505344|ref|ZP_05345588.3| ribosome-associated GTPase EngA [Bryantella formatexigens DSM 14469] gi|255268481|gb|EET61686.1| ribosome-associated GTPase EngA [Bryantella formatexigens DSM 14469] Length = 442 Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 56/88 (63%), Gaps = 1/88 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFNALA ++++IV D PG TRD + D++ Y + DT GI ++ Sbjct: 6 VAIVGRPNVGKSTLFNALAGENISIVKDTPGVTRDRIYADVEWLNYQFTLIDTGGIEPDS 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308 D++ + ++ + ++ AD+I+ + ++ Sbjct: 66 SDVILSQMREQAQIAIDTADVIIFMVDV 93 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 38/66 (57%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I ++G N GKSS+ N L ++ IV+DI GTTRD + + G DTAG+R Sbjct: 179 RIAVVGKPNVGKSSIINKLLGENRVIVSDIAGTTRDAIDTAITWGGREYVFIDTAGLRRK 238 Query: 281 DDIVEK 286 + I E+ Sbjct: 239 NKIKEE 244 >gi|187731692|ref|YP_001881302.1| GTP-binding protein EngA [Shigella boydii CDC 3083-94] gi|238691721|sp|B2TXT6|DER_SHIB3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|187428684|gb|ACD07958.1| ribosome-associated GTPase EngA [Shigella boydii CDC 3083-94] Length = 490 Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G + DTAG+R+ Sbjct: 204 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 263 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D VEK + +T +E+A++++L+ I++++ IS Sbjct: 264 GKITDAVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 299 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 D VE +++ L +E AD++L + Sbjct: 65 DGVETRMAEQSLLAIEEADVVLFM 88 >gi|1518044|gb|AAB62738.1| ThdF protein [Borrelia burgdorferi] Length = 140 Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 47/137 (34%), Positives = 71/137 (51%), Gaps = 17/137 (12%) Query: 8 IFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLD---GRILDKG 64 I A++T L SA+ +IR SG S I K K F ++L G G ILD Sbjct: 11 IVALATPFLSSALCVIRSSGASS------ISKFSKIFSNHSALNSASGNTIHYGYILDSE 64 Query: 65 -------LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRA 117 +++ +P+SFTG+D+ E HG + + I++ K R+A PGEF+ RA Sbjct: 65 NGCKVDEVVVCLYAPKSFTGQDAIEVMAHGSVIGIKKIIDLFLK-SGFRMAEPGEFTLRA 123 Query: 118 FENGKIDLLEAESLADL 134 F KIDL +AE++ ++ Sbjct: 124 FLAKKIDLTKAEAIHEI 140 >gi|238797968|ref|ZP_04641458.1| GTP-binding protein engA [Yersinia mollaretii ATCC 43969] gi|238718173|gb|EEQ09999.1| GTP-binding protein engA [Yersinia mollaretii ATCC 43969] Length = 495 Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 48/155 (30%), Positives = 76/155 (49%), Gaps = 19/155 (12%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L A+V D PG TRD ++EG+ + DT GI T+ Sbjct: 5 IALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGHEFIVIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL---------------KEINSKKEISF--PKNIDFIF 324 D VE + ++ L +E AD++L + + + S+++ +F D I Sbjct: 65 DGVETKMAGQSLLAIEEADIVLFMVDARAGLMPADQGIAQHLRSREKATFLVANKTDGID 124 Query: 325 IGTKS-DLYSTYTEEYDHLISSFTGEGLEELINKI 358 T + D YS E H I++ G G+ +LI + Sbjct: 125 PDTATADFYSLGLGEV-HAIAASHGRGVTQLIEDV 158 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/98 (34%), Positives = 60/98 (61%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + +D +V D+PGTTRD + I + + + DTAG+R+ Sbjct: 209 KLAIVGRPNVGKSTLTNRILGEDRVVVYDLPGTTRDSIYIPMTRDEREYVLIDTAGVRKR 268 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + VEK + +T +E+++++LL+ I+++ IS Sbjct: 269 GKVTETVEKFSVIKTLQAIEDSNVVLLV--IDARDGIS 304 >gi|289578647|ref|YP_003477274.1| ribosome-associated GTPase EngA [Thermoanaerobacter italicus Ab9] gi|289528360|gb|ADD02712.1| ribosome-associated GTPase EngA [Thermoanaerobacter italicus Ab9] Length = 439 Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI ++G N GKSSL N + ++ IV+DIPGTTRD + +G + DTAGIR Sbjct: 178 KIAVIGRPNVGKSSLVNKILGEERVIVSDIPGTTRDAIDTPFSKDGKNYVLIDTAGIRRK 237 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 I +E+ + R +E +D+ LL+ Sbjct: 238 SRISESIERYSVLRALTAIERSDICLLM 265 Score = 43.9 bits (102), Expect = 0.046, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RET 280 + I+G N GKS+LFN + K ++IV D PG TRD + + + + DT G+ + Sbjct: 6 VSIVGRPNVGKSTLFNKIMGKRISIVEDKPGVTRDRICGNAEWLNKKFILVDTGGLDPDA 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 +DI+ + + +E +++IL L Sbjct: 66 EDIIFSKVRLQVEAAIEASEVILFL 90 >gi|331005663|ref|ZP_08329030.1| GTP-binding protein EngA [gamma proteobacterium IMCC1989] gi|330420521|gb|EGG94820.1| GTP-binding protein EngA [gamma proteobacterium IMCC1989] Length = 482 Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 37/88 (42%), Positives = 53/88 (60%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI I+G N GKS+L N + +D +V D GTTRD + I+ + G I DTAGIR Sbjct: 192 KIAIVGRPNVGKSTLVNRMLGEDRVVVYDEAGTTRDSIYINYERHGKPYTIIDTAGIRRR 251 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 +I VEK I +T +E+A++++LL Sbjct: 252 KNISLTVEKFSIVKTLQSIEDANVVVLL 279 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L ++ AIV D G TRD ++ E DT G+ + Sbjct: 5 IALVGRPNVGKSTLFNRLTRRRDAIVADFAGLTRDRQYGEVIWEERRFLFVDTGGLSGDE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + ++ +++ L +E ADL+L + Sbjct: 65 EGIDSAMAEQSLLAIEEADLVLFM 88 >gi|240949663|ref|ZP_04753998.1| GTP-binding protein EngA [Actinobacillus minor NM305] gi|240295921|gb|EER46597.1| GTP-binding protein EngA [Actinobacillus minor NM305] Length = 510 Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 36/98 (36%), Positives = 61/98 (62%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G I DTAG+R Sbjct: 223 KIAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGQHYTIIDTAGVRRR 282 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + VEK + +T +++A+++LL I++++ IS Sbjct: 283 GKVNLAVEKFSVIKTLQAIQDANVVLLT--IDAREGIS 318 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 51/84 (60%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++ GY + DT GI ++ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANIGGYDFIVIDTGGIDGSE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE++ +++ L +E AD++L L Sbjct: 65 EGVEEKMAEQSLLAIEEADVVLFL 88 >gi|297544868|ref|YP_003677170.1| ribosome-associated GTPase EngA [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842643|gb|ADH61159.1| ribosome-associated GTPase EngA [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 439 Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI ++G N GKSSL N + ++ IV+DIPGTTRD + +G + DTAGIR Sbjct: 178 KIAVIGRPNVGKSSLVNKILGEERVIVSDIPGTTRDAIDTPFSKDGKNYVLIDTAGIRRK 237 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 I +E+ + R +E +D+ LL+ Sbjct: 238 SRISESIERYSVLRALTAIERSDICLLM 265 Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RET 280 + I+G N GKS+LFN + K ++IV D PG TRD + + + + DT G+ + Sbjct: 6 VSIVGRPNVGKSTLFNKIMGKRISIVEDKPGVTRDRICGNAEWLNKKFILVDTGGLDPDA 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 +DI+ + + +E +++IL L Sbjct: 66 EDIIFSKVRLQVEAAIEASEVILFL 90 >gi|242278504|ref|YP_002990633.1| GTP-binding protein EngA [Desulfovibrio salexigens DSM 2638] gi|259645870|sp|C6C0G0|DER_DESAD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|242121398|gb|ACS79094.1| small GTP-binding protein [Desulfovibrio salexigens DSM 2638] Length = 450 Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 33/90 (36%), Positives = 52/90 (57%), Gaps = 3/90 (3%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G KI +LG NAGKSS+ NAL ++ IV+D+ GTTRD + + + G + DTAG+R Sbjct: 182 GLKIAMLGRPNAGKSSMVNALTGEERVIVSDVAGTTRDSVDVTFESGGKIYTFVDTAGVR 241 Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLL 305 +I +E+ + R AD+ +++ Sbjct: 242 RRTNITDTIERFSVVRALRSSTKADITVMV 271 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 1/62 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 I ++G N GKS+LFN L +K AI D+PG TRD + + + G + DT G + E+ Sbjct: 5 IALIGRPNVGKSTLFNRLLRKKRAITHDMPGITRDRIYAEGNYNGVHYALIDTGGLVMES 64 Query: 281 DD 282 D+ Sbjct: 65 DN 66 >gi|170757031|ref|YP_001782064.1| GTP-binding protein EngA [Clostridium botulinum B1 str. Okra] gi|229710728|sp|B1IIN2|DER_CLOBK RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|169122243|gb|ACA46079.1| ribosome-associated GTPase EngA [Clostridium botulinum B1 str. Okra] Length = 439 Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 33/85 (38%), Positives = 52/85 (61%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFN LA K +AIV D PG TRD + + + Y + DT GI E+ Sbjct: 6 VAIVGRPNVGKSTLFNKLAGKRIAIVQDTPGVTRDRIYAEAEWLNYKFTMIDTGGIEPES 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 +DI+ + ++ + +E A++I+ L Sbjct: 66 EDIIVSQMRRQAQIAIEMANVIIFL 90 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 34/87 (39%), Positives = 51/87 (58%), Gaps = 3/87 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I +G N GKSSL N L ++ IV+DIPGTTRD + +D E + DTAG+R Sbjct: 179 IAFIGKPNVGKSSLINKLLGEERLIVSDIPGTTRDSIDSYVDTEFGEFTLIDTAGLRRKS 238 Query: 282 DI---VEKEGIKRTFLEVENADLILLL 305 + +E+ + RT+ +E AD+ +L+ Sbjct: 239 KVKEEIERYSVIRTYASIERADVCILM 265 >gi|284929084|ref|YP_003421606.1| ribosome-associated GTPase EngA [cyanobacterium UCYN-A] gi|284809543|gb|ADB95248.1| ribosome-associated GTPase EngA [cyanobacterium UCYN-A] Length = 452 Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 35/87 (40%), Positives = 52/87 (59%), Gaps = 3/87 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKSSL NA + AIV+ I GTTRDV+ ++ +G + ++ DTAGIR Sbjct: 179 VSIVGRPNVGKSSLLNAFLGEKRAIVSPIAGTTRDVIDTIVERKGKVYRLVDTAGIRRKK 238 Query: 282 DI---VEKEGIKRTFLEVENADLILLL 305 ++ E I R F + AD++LL+ Sbjct: 239 NVEYGAEFFSINRAFKAIRRADVVLLV 265 Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 32/61 (52%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+L N LAK AIV D PG TRD + + + DT G+ D Sbjct: 6 VAVIGRPNVGKSTLVNRLAKNRQAIVHDEPGITRDRVYRQAFWRTHDFLVVDTGGLVFND 65 Query: 282 D 282 + Sbjct: 66 N 66 >gi|239831251|ref|ZP_04679580.1| small GTP-binding protein [Ochrobactrum intermedium LMG 3301] gi|239823518|gb|EEQ95086.1| small GTP-binding protein [Ochrobactrum intermedium LMG 3301] Length = 489 Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 81/165 (49%), Gaps = 24/165 (14%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G+ + I+G N GKS+LFN L + +A+V D+PG TRD D L ++ DTAG+ Sbjct: 8 GFTVAIVGRPNVGKSTLFNRLVGRKLALVDDLPGVTRDRRIHDAKLYDLKFQVIDTAGLE 67 Query: 279 E-TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF-----------IFIG 326 E +D +E +T ++ AD+IL + +++K ++ P + F + + Sbjct: 68 EAANDSLEARMRAQTEAAIQEADVILFV--VDAKNGLT-PTDSTFAEVVRRSGKPVVLVA 124 Query: 327 TKSDLYSTYTEEYDHL---------ISSFTGEGLEELINKIKSIL 362 K++ + YD IS+ G+G+ +L + I +L Sbjct: 125 NKAEARGAQSGMYDAFQLGLGEPCPISAEHGQGMPDLRDAIVELL 169 Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 38/66 (57%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I I+G NAGKS+L N + +D + G TRD +++D + +K+ DTAG+R Sbjct: 219 RIAIVGRPNAGKSTLINTMLGEDRLLTGPEAGITRDSISVDWEWRDRKIKLFDTAGLRRK 278 Query: 281 DDIVEK 286 + EK Sbjct: 279 SRVQEK 284 >gi|306820449|ref|ZP_07454085.1| ribosome-associated GTPase EngA [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551524|gb|EFM39479.1| ribosome-associated GTPase EngA [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 439 Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 55/88 (62%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G NAGKSS+ NA+ ++ IV+ I GTTRD + +++G DTAGIR+ Sbjct: 177 KVAIVGRPNAGKSSILNAIIGEERTIVSPIAGTTRDAIDEKCEIDGKSYTFIDTAGIRKK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + I +EK + R++ +E D++L++ Sbjct: 237 NKIFDNIEKYSVLRSYTAIERCDVVLMV 264 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 51/85 (60%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFN L + ++IV D PG TRD + D++ Y + DT GI +T Sbjct: 5 VAIVGRPNVGKSTLFNRLVGEKISIVEDTPGVTRDRIFADVNWLTYTFTLIDTGGIETDT 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 ++++ K+ + ++ +D+I+ + Sbjct: 65 EEMIPAMMRKQAQVAIDMSDVIMFV 89 >gi|153007833|ref|YP_001369048.1| GTP-binding protein EngA [Ochrobactrum anthropi ATCC 49188] gi|166225832|sp|A6WW65|DER_OCHA4 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|151559721|gb|ABS13219.1| small GTP-binding protein [Ochrobactrum anthropi ATCC 49188] Length = 483 Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 81/165 (49%), Gaps = 24/165 (14%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G+ + I+G N GKS+LFN L + +A+V D+PG TRD D L ++ DTAG+ Sbjct: 2 GFTVAIVGRPNVGKSTLFNRLVGRKLALVDDLPGVTRDRRIHDAKLYDLKFQVIDTAGLE 61 Query: 279 E-TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF-----------IFIG 326 E +D +E +T ++ AD+IL + +++K ++ P + F + + Sbjct: 62 EAANDSLEARMRAQTEAAIQEADVILFV--VDAKNGLT-PTDSTFAEVVRRSGKPVVLVA 118 Query: 327 TKSDLYSTYTEEYDHL---------ISSFTGEGLEELINKIKSIL 362 K++ + YD IS+ G+G+ +L + I +L Sbjct: 119 NKAEARGAQSGMYDAFQLGLGEPCPISAEHGQGMPDLRDAIVELL 163 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 39/66 (59%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I I+G NAGKS+L N + +D + G TRD +++D + G +K+ DTAG+R Sbjct: 213 RIAIVGRPNAGKSTLINTMLGEDRLLTGPEAGITRDSISVDWEWRGRKIKLFDTAGLRRK 272 Query: 281 DDIVEK 286 + EK Sbjct: 273 SRVQEK 278 >gi|91792618|ref|YP_562269.1| GTP-binding protein EngA [Shewanella denitrificans OS217] gi|122968866|sp|Q12PT0|DER_SHEDO RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|91714620|gb|ABE54546.1| Small GTP-binding protein domain [Shewanella denitrificans OS217] Length = 491 Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 56/88 (63%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 K+ I+G N GKS+L N + ++ +V D PGTTRD + I ++ EG + DTAG+R Sbjct: 201 KLAIIGKPNVGKSTLINRILGEERVVVYDAPGTTRDSIYIPMEREGREYVLIDTAGVRRR 260 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305 + +++EK + +T VE+A+++LL+ Sbjct: 261 SKVHEVIEKFSVIKTLKAVEDANVVLLV 288 Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 50/89 (56%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD L GY + DT GI ++ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAFLSGYEFIVVDTGGIDGSE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310 + +E + +++ +E AD++L L + + Sbjct: 65 EGIETKMAEQSLAAIEEADVVLFLTDARA 93 >gi|207342426|gb|EDZ70196.1| YMR023Cp-like protein [Saccharomyces cerevisiae AWRI1631] Length = 214 Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 71/215 (33%), Positives = 100/215 (46%), Gaps = 41/215 (19%) Query: 262 LDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNI 320 +++ GY V I DTAGIRE + D +E GI R + +DL L + + ++ P++I Sbjct: 5 INVNGYKVIICDTAGIREKSSDKIEMLGIDRAKKKSVQSDLCLFIVDPTDLSKL-LPEDI 63 Query: 321 ------------DFIFIGTKSDLYST--YTEEYDHL------------ISSFTGEGLEEL 354 I + KSDL S T+ + L +S T EG+E L Sbjct: 64 LAHLSSKTFGNKRIIIVVNKSDLVSDDEMTKVLNKLQTRLGSKYPILSVSCKTKEGIESL 123 Query: 355 INKIKSILSNKFKKLPFS------IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDII--A 406 I S L++ F+ L S + KR L V Y KD DI+ Sbjct: 124 I----STLTSNFESLSQSSADASPVIVSKRVSEILKNDVLYGLEEFFKSKDFHNDIVLAT 179 Query: 407 ENLRLASVSLGKITG-CVDVEQLLDIIFSKFCIGK 440 ENLR AS + KITG + +E++LD +FSKFCIGK Sbjct: 180 ENLRYASDGIAKITGQAIGIEEILDSVFSKFCIGK 214 >gi|319787003|ref|YP_004146478.1| ribosome-associated GTPase EngA [Pseudoxanthomonas suwonensis 11-1] gi|317465515|gb|ADV27247.1| ribosome-associated GTPase EngA [Pseudoxanthomonas suwonensis 11-1] Length = 465 Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 82/162 (50%), Gaps = 17/162 (10%) Query: 161 WIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLK-------NDISSHI-----S 208 W+ KL + +D + EE V+ ++ D+L + +D+ + + Sbjct: 106 WLRKLARPTLLVVNKIDGTFEEAVRGEFARYGFADMLAVSAAHRQGLDDLHAEVLERLPE 165 Query: 209 QGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266 +G + E+ + +I +G N GKS+L N + ++ I +++PGTTRD + +DL+ +G Sbjct: 166 EGSVEELDNDPDRLRIAFVGRPNVGKSTLVNRVLGEERMIASEVPGTTRDSIAVDLERDG 225 Query: 267 YLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305 L ++ DTAGIR I VEK + +T +E + +L+ Sbjct: 226 RLYRLIDTAGIRRKGKIEEAVEKFSVVKTLQAIERCQVAVLM 267 Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust. Identities = 27/60 (45%), Positives = 34/60 (56%), Gaps = 7/60 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD----VLTIDLDLEGYLVKISDTAGI 277 + ++G N GKS+LFNAL + A+V D PG TRD V +D D LV DT GI Sbjct: 5 VALVGRPNVGKSTLFNALTRSRDALVHDEPGVTRDRHYGVCRLDPDRPFLLV---DTGGI 61 >gi|170760623|ref|YP_001787836.1| GTP-binding protein EngA [Clostridium botulinum A3 str. Loch Maree] gi|238688523|sp|B1KX71|DER_CLOBM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|169407612|gb|ACA56023.1| ribosome-associated GTPase EngA [Clostridium botulinum A3 str. Loch Maree] Length = 439 Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 33/85 (38%), Positives = 52/85 (61%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFN LA K +AIV D PG TRD + + + Y + DT GI E+ Sbjct: 6 VAIVGRPNVGKSTLFNKLAGKRIAIVQDTPGVTRDRIYAEAEWLNYKFTMIDTGGIEPES 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 +DI+ + ++ + +E A++I+ L Sbjct: 66 EDIIVSQMRRQAQIAIEMANVIIFL 90 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 34/87 (39%), Positives = 51/87 (58%), Gaps = 3/87 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I +G N GKSSL N L ++ IV+DIPGTTRD + +D E + DTAG+R Sbjct: 179 IAFIGKPNVGKSSLINKLLGEERLIVSDIPGTTRDSIDSYVDTEFGEFTLIDTAGLRRKS 238 Query: 282 DI---VEKEGIKRTFLEVENADLILLL 305 + +E+ + RT+ +E AD+ +L+ Sbjct: 239 KVKEEIERYSVIRTYASIERADVCILM 265 >gi|311694388|gb|ADP97261.1| GTP-binding protein EngA [marine bacterium HP15] Length = 452 Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 55/90 (61%), Gaps = 3/90 (3%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G +I ++G N GKS+L N + +D +V D+PGTTRD + I + +G + DTAG+R Sbjct: 155 GIRIGVVGRPNVGKSTLVNRMLGEDRVVVYDMPGTTRDSVYIPYERQGSQYTLIDTAGVR 214 Query: 279 E---TDDIVEKEGIKRTFLEVENADLILLL 305 ++VEK I +T +++A +++L+ Sbjct: 215 RRKNVSEVVEKFSIIKTLQAIDDAHVVILV 244 >gi|183599734|ref|ZP_02961227.1| hypothetical protein PROSTU_03237 [Providencia stuartii ATCC 25827] gi|188021993|gb|EDU60033.1| hypothetical protein PROSTU_03237 [Providencia stuartii ATCC 25827] Length = 490 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 36/98 (36%), Positives = 63/98 (64%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G + DTAG+R+ Sbjct: 205 KLAIVGRPNVGKSTLTNRILGEERVVVFDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 264 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 I VEK + +T +E+A+++LL+ I++++ IS Sbjct: 265 GKITETVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 300 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 75/157 (47%), Gaps = 25/157 (15%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG+ I DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGHEFIIIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL---------------KEINSKKEISF--PKNIDFI- 323 + VE ++ +E AD++L + K + S+K+ ++ D I Sbjct: 65 EGVETHMAAQSLQAIEEADVVLFMVDARAGLMPADEGIAKHLRSRKKKTYLVANKTDGID 124 Query: 324 ---FIGTKSDLYSTYTEEYDHLISSFTGEGLEELINK 357 IG D YS E H I++ G G+ +LI K Sbjct: 125 ADSVIG---DFYSLGLGEI-HPIAASHGRGVTQLIEK 157 >gi|315637145|ref|ZP_07892368.1| ribosome-associated GTPase EngA [Arcobacter butzleri JV22] gi|315478681|gb|EFU69391.1| ribosome-associated GTPase EngA [Arcobacter butzleri JV22] Length = 485 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 35/86 (40%), Positives = 56/86 (65%), Gaps = 2/86 (2%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI ++G N GKSSLFN +A K +AIV+D+ GTTRD+ ++++ + + DT GI +T Sbjct: 7 KIALIGQPNVGKSSLFNRIANKRIAIVSDMAGTTRDIRKHEIEILDRVGLLVDTGGIDDT 66 Query: 281 DDIVEKEGIKRTFLEV-ENADLILLL 305 +D + +KR +E + AD+IL + Sbjct: 67 NDAI-FSNVKRKAIETAKEADIILFM 91 Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 29/186 (15%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273 EI + + I+G N GKSS+ NA+ + ++V+ I GTT D + + + + D Sbjct: 212 EIDESKINVAIIGRVNVGKSSILNAIVGAERSVVSPIAGTTIDPVDESFEYKEKQITFVD 271 Query: 274 TAGIRETDDI--VEKEGIKRTFLEVENADLILLLKEINSKKEIS-----FPKNIDFIFIG 326 TAG+R I +EK + RT +E A++ L++ +++ +E++ +D +G Sbjct: 272 TAGLRRRGSIEGIEKYALMRTKEMLEKANMALVV--LDASRELTDLDEKIAGLVDEYGLG 329 Query: 327 T---------KSDLYSTYTEEYDH-----------LISSFTGEGLEELINKIKSILSNKF 366 T D + EE +S+ TG +E L +KI I N Sbjct: 330 TIIVLNKWDENMDTFQKIEEEIRRRFRFLSYAPIIAVSAKTGRSIERLKDKIIEIFDNYT 389 Query: 367 KKLPFS 372 +++P S Sbjct: 390 QRIPTS 395 >gi|293391945|ref|ZP_06636279.1| GTP-binding protein EngA [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952479|gb|EFE02598.1| GTP-binding protein EngA [Aggregatibacter actinomycetemcomitans D7S-1] Length = 510 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 59/231 (25%), Positives = 103/231 (44%), Gaps = 51/231 (22%) Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232 + D DFS EED L +++ + K KI I+G N GK Sbjct: 193 DEDFDFSNEEDTA------------LLDEELAQEQTPDK------KNIKIAIVGRPNVGK 234 Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGI 289 S+L N + +D +V D+PGTTRD + I ++ + + DTAG+R+ + VEK + Sbjct: 235 STLTNRILGEDRVVVYDLPGTTRDSIYIPMERDNQNYTLIDTAGVRKRGKVHLAVEKFSV 294 Query: 290 KRTFLEVENADLILLL---KEINSKKEISFPKNIDFI-------------FIGTKSDLYS 333 +T +++A+++LL+ +E S +++S + FI + G +++ + Sbjct: 295 IKTLQAIQDANVVLLVIDARENISDQDLSL---LGFILNAGRSLVIVVNKWDGLDTEVKN 351 Query: 334 TYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373 E D H IS+ G G+ L + IK +K+ S+ Sbjct: 352 RVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSIKEAYECATQKMTTSM 402 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 50/84 (59%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD L G+ + DT GI T+ Sbjct: 6 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHLAGHDFIVIDTGGIDGTE 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE++ +++ L +E AD++L L Sbjct: 66 EGVEEKMAEQSLLAIEEADIVLFL 89 >gi|15828559|ref|NP_325919.1| GTP-binding protein EngA [Mycoplasma pulmonis UAB CTIP] gi|26006733|sp|Q98RC1|DER_MYCPU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|14089501|emb|CAC13261.1| GTP-BINDING PROTEIN [Mycoplasma pulmonis] Length = 435 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 55/163 (33%), Positives = 91/163 (55%), Gaps = 27/163 (16%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN L K V+IV D PG TRD + +++ G +I DT GI +D Sbjct: 10 VAIVGKPNVGKSTLFNRLVGKRVSIVYDQPGVTRDRIYENINWSGKNFRIIDTGGIVVSD 69 Query: 282 D-IVEKEGIKRTFLEVENADLILLL----KEI------------NSKKEISFPKN-IDFI 323 VE+ I+ + +E +++IL + +EI NSKK++ N +D Sbjct: 70 QPFVEQIRIQAQ-IAIEESEIILFVIDGSEEITSDDLYIASILRNSKKKVLVLANKLD-- 126 Query: 324 FIGTKSDLYSTYT---EEYDHLISSFTGEGLEELINKIKSILS 363 K++ YS Y+ E+Y + ISS GEG+ E+++K+ ++++ Sbjct: 127 --NNKNEDYSIYSLGFEDY-YKISSVHGEGIGEVLDKVINLMN 166 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/99 (39%), Positives = 61/99 (61%), Gaps = 5/99 (5%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 +KI ILG NAGKSSL NAL K++ +IV++I GTTRD + +++E I DTAGI Sbjct: 176 FKIAILGKPNAGKSSLLNALTKQERSIVSEIAGTTRDSIKSTIEIEDQKFFIIDTAGINR 235 Query: 280 TDDIVEK---EGIKRTFLEVENADLILLLKEINSKKEIS 315 +VE + R ++ +DL +++ I++ +E+S Sbjct: 236 KSKLVESVDHYALMRAMGSLDESDLSIII--IDATEELS 272 >gi|227498500|ref|ZP_03928646.1| small GTP-binding protein [Acidaminococcus sp. D21] gi|226903958|gb|EEH89876.1| small GTP-binding protein [Acidaminococcus sp. D21] Length = 403 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 55/88 (62%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 K+ I+G N GKSS+FN + + +IV+D+ GTTRD + + + +G DTAG+R Sbjct: 180 KVAIIGRPNVGKSSIFNDIIGQTRSIVSDVAGTTRDAIDVPVMKDGQTYLFIDTAGMRRK 239 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305 + D+ +EK I RT V+ +D++L++ Sbjct: 240 GKIDEPIEKYSIIRTLRAVDRSDVVLMV 267 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 7/88 (7%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--E 279 + I+G N GKS+LFN A ++IV D PG TRD L + + + DT GI Sbjct: 6 VAIVGRPNVGKSTLFNIFADSRISIVEDTPGVTRDRLYAEAEWLDRRFMMVDTGGIEIAN 65 Query: 280 TDDIVE--KEGIKRTFLEVENADLILLL 305 TD I +E K + ++ AD+IL + Sbjct: 66 TDSIAVSIREQAK---IAIKEADVILFV 90 >gi|167747191|ref|ZP_02419318.1| hypothetical protein ANACAC_01905 [Anaerostipes caccae DSM 14662] gi|317473608|ref|ZP_07932897.1| ribosome-associated GTPase EngA [Anaerostipes sp. 3_2_56FAA] gi|167654151|gb|EDR98280.1| hypothetical protein ANACAC_01905 [Anaerostipes caccae DSM 14662] gi|316898898|gb|EFV20923.1| ribosome-associated GTPase EngA [Anaerostipes sp. 3_2_56FAA] Length = 440 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 54/88 (61%), Gaps = 1/88 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFNALA ++++IV D PG TRD + D+ Y + DT GI ++ Sbjct: 6 VAIVGRPNVGKSTLFNALAGENISIVKDTPGVTRDRIYADISWLNYNFTLIDTGGIEPDS 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308 D++ ++ + +E AD+I+ L ++ Sbjct: 66 GDVILSRMREQAQIAIETADVIIFLVDV 93 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI I+G NAGKSS+ N + ++ IV+D+ GTTRD + + G DTAG+R Sbjct: 179 KIAIIGKPNAGKSSIINKMLGEERVIVSDVAGTTRDAIDTVIQKNGKEYVFIDTAGLRRK 238 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + I +E+ + RT VE D+ +L+ Sbjct: 239 NKIKEDLERYSVIRTVSAVERCDVAVLV 266 >gi|150016018|ref|YP_001308272.1| GTP-binding protein EngA [Clostridium beijerinckii NCIMB 8052] gi|189037141|sp|A6LSI6|DER_CLOB8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|149902483|gb|ABR33316.1| small GTP-binding protein [Clostridium beijerinckii NCIMB 8052] Length = 438 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 33/85 (38%), Positives = 52/85 (61%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFN LA K ++IV D PG TRD + + + Y + DT GI E Sbjct: 6 VAIVGRPNVGKSTLFNKLAGKRISIVQDTPGVTRDRVYAEAEWLRYNFTMIDTGGIEPEN 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 +DI+ K+ ++ + +E AD+I+ + Sbjct: 66 NDIIIKQMRRQANIAIETADVIIFI 90 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 53/88 (60%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I ++G N GKSSL N L ++ IV+DIPGTTRD + L+ E + DTAG+R Sbjct: 178 RIAMIGKPNVGKSSLINKLLGEERVIVSDIPGTTRDSIDSHLETEEGKFILVDTAGLRRK 237 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E+ + RT+ +E AD+ +L+ Sbjct: 238 SKVKEEIERYSVIRTYAAIERADVCILM 265 >gi|332519774|ref|ZP_08396238.1| ribosome-associated GTPase EngA [Lacinutrix algicola 5H-3-7-4] gi|332044333|gb|EGI80527.1| ribosome-associated GTPase EngA [Lacinutrix algicola 5H-3-7-4] Length = 435 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 35/92 (38%), Positives = 54/92 (58%), Gaps = 3/92 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G NAGKSS NAL +D IVTDI GTTRD + + G+ + DTAGIR+ Sbjct: 177 RFAVVGRPNAGKSSFINALIGEDRYIVTDIAGTTRDAIDTKYNRFGFDFNLVDTAGIRKK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEIN 309 + +E + R+ +E++D+ LL+ + N Sbjct: 237 SKVKEDLEFYSVMRSVRAIEHSDVCLLVVDAN 268 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 1/90 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 + I+G N GKS+ FN L ++ AIV + G TRD D G + DT G ++ + Sbjct: 5 VAIVGRPNVGKSTFFNRLIQRREAIVDAVSGVTRDRHYGKSDWNGKEFSLIDTGGYVKGS 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310 DDI E E K+ L +E AD I+ + ++ + Sbjct: 65 DDIFEAEIDKQVELAIEEADAIIFMVDVEA 94 >gi|289423237|ref|ZP_06425048.1| small GTP-binding protein [Peptostreptococcus anaerobius 653-L] gi|289156337|gb|EFD04991.1| small GTP-binding protein [Peptostreptococcus anaerobius 653-L] Length = 417 Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 40/93 (43%), Positives = 61/93 (65%), Gaps = 2/93 (2%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276 N IV+LG N+GKSS+FN L +D +IV D GTT D + ++L Y VKI DTAG Sbjct: 7 NRKNIVLLGRRNSGKSSIFNLLIDQDKSIVADYLGTTTDPVYHMMELLPYGPVKIVDTAG 66 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309 I + + +V ++ + +T LE+E+ADL++ + + N Sbjct: 67 I-DDEGLVGQKRVDKTRLEIEDADLLVYVIDAN 98 >gi|255533659|ref|YP_003094031.1| small GTP-binding protein [Pedobacter heparinus DSM 2366] gi|255346643|gb|ACU05969.1| small GTP-binding protein [Pedobacter heparinus DSM 2366] Length = 433 Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 37/88 (42%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI I+G N GKSSL NAL K+ IVT I GTTRD + I + G+ DTAG+R+ Sbjct: 175 KITIVGRPNVGKSSLINALMGKERNIVTPIAGTTRDSIHIHYNQFGHEFMFIDTAGLRKK 234 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E + RT +E AD+++L+ Sbjct: 235 TKVKENIEFYSVMRTIKALEEADVVILM 262 Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust. Identities = 40/155 (25%), Positives = 70/155 (45%), Gaps = 18/155 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 I I+G N GKS+LFN L + AIV D G TRD + + DT G + + Sbjct: 5 IAIVGRPNVGKSTLFNRLTESRKAIVDDFSGVTRDRHYGVAEWTDKQFTVIDTGGYVANS 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN----------------SKKEISFPKN-IDFI 323 +D+ E ++ + +E A ++L + ++ SKK + N +D Sbjct: 65 EDVFEAAIREQVIIAIEEATVLLFMVDVTTGITDLDDEIAQLLRRSKKPVFIVVNKVDNT 124 Query: 324 FIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKI 358 + + ++ + H ISS TG G +L++++ Sbjct: 125 QLQNDAAVFYGFGLGEIHPISSMTGSGTGDLLDEV 159 >gi|254519255|ref|ZP_05131311.1| small GTP-binding protein [Clostridium sp. 7_2_43FAA] gi|226913004|gb|EEH98205.1| small GTP-binding protein [Clostridium sp. 7_2_43FAA] Length = 438 Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 53/88 (60%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I ++G N GKSSL N L ++ IV+DIPGTTRD + L+ E + DTAG+R Sbjct: 178 RIAMIGKPNVGKSSLINRLLGEERLIVSDIPGTTRDSIDSALETEQGKFILVDTAGLRRK 237 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E+ + RT+ +E AD+ +L+ Sbjct: 238 SKVKEEIERYSVIRTYAAIERADVCILM 265 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 32/85 (37%), Positives = 51/85 (60%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFN LA + ++IV D PG TRD + + Y + DT GI E Sbjct: 6 VAIVGRPNVGKSTLFNKLAGQRISIVQDTPGVTRDRVYAQAEWLNYNFTMIDTGGIEPER 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 +DI+ K+ ++ + +E AD+I+ + Sbjct: 66 EDIIVKQMRRQANIAIETADVIIFV 90 >gi|157737421|ref|YP_001490104.1| GTP-binding protein EngA [Arcobacter butzleri RM4018] gi|157699275|gb|ABV67435.1| GTP-binding protein [Arcobacter butzleri RM4018] Length = 485 Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 35/86 (40%), Positives = 56/86 (65%), Gaps = 2/86 (2%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI ++G N GKSSLFN +A K +AIV+D+ GTTRD+ ++++ + + DT GI +T Sbjct: 7 KIALIGQPNVGKSSLFNRIANKRIAIVSDMAGTTRDIRKHEIEILDRVGLLVDTGGIDDT 66 Query: 281 DDIVEKEGIKRTFLEV-ENADLILLL 305 +D + +KR +E + AD+IL + Sbjct: 67 NDAI-FSNVKRKAIETAKEADIILFM 91 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 46/178 (25%), Positives = 82/178 (46%), Gaps = 29/178 (16%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKSS+ NA+ + ++V+ I GTT D + + + + DTAG+R Sbjct: 220 VAIIGRVNVGKSSVLNAIVGAERSVVSPIAGTTIDPVDESFEYKEKQITFVDTAGLRRRG 279 Query: 282 DI--VEKEGIKRTFLEVENADLILLLKEINSKKEIS-----FPKNIDFIFIGT------- 327 I +EK + RT +E A++ L++ +++ +E++ +D +GT Sbjct: 280 SIEGIEKYALMRTKEMLEKANMALVV--LDASRELTDLDEKIAGLVDEYGLGTIIVLNKW 337 Query: 328 --KSDLYSTYTEEYDH-----------LISSFTGEGLEELINKIKSILSNKFKKLPFS 372 D + EE +S+ TG +E L +KI I N +++P S Sbjct: 338 DENMDTFQKIEEEIRRRFRFLSYAPIIAVSAKTGRSIERLKDKIIEIFDNYTQRIPTS 395 >gi|125973539|ref|YP_001037449.1| small GTP-binding protein [Clostridium thermocellum ATCC 27405] gi|256003357|ref|ZP_05428348.1| small GTP-binding protein [Clostridium thermocellum DSM 2360] gi|281417743|ref|ZP_06248763.1| ribosome-associated GTPase EngA [Clostridium thermocellum JW20] gi|166224331|sp|A3DE77|DER_CLOTH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|125713764|gb|ABN52256.1| small GTP-binding protein [Clostridium thermocellum ATCC 27405] gi|255992647|gb|EEU02738.1| small GTP-binding protein [Clostridium thermocellum DSM 2360] gi|281409145|gb|EFB39403.1| ribosome-associated GTPase EngA [Clostridium thermocellum JW20] gi|316940220|gb|ADU74254.1| ribosome-associated GTPase EngA [Clostridium thermocellum DSM 1313] Length = 440 Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 38/98 (38%), Positives = 59/98 (60%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ ++G N GKSSL N + ++ IV+DIPGTTRD + ++ E DTAGIR Sbjct: 179 KVAVVGKPNVGKSSLINRILGEERVIVSDIPGTTRDAIDTFVENEHGKFVFIDTAGIRRQ 238 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 I +EK I R++ +E AD+ L+L I++K+ ++ Sbjct: 239 SKINEKIEKYSIIRSWTAIERADVCLIL--IDAKEGVT 274 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 41/156 (26%), Positives = 77/156 (49%), Gaps = 19/156 (12%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280 + ++G N GKS+ FN L K ++IV D PG TRD + +++ + DT GI + Sbjct: 6 VAVVGRPNVGKSTFFNYLVGKRISIVEDTPGVTRDRIYAEVEWRNKKFTLIDTGGIEPYS 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN-----SKKEIS--FPKNIDFIFIGTK----- 328 +D + ++ ++ + +E AD+I+ + ++ S KE++ K + + Sbjct: 66 EDKIMQQMKRQAEIAIETADIIIFMVDVKDGVTASDKEVATLLRKTKKPVIVAVNKVDKI 125 Query: 329 ----SDLYSTYTEEYDHL--ISSFTGEGLEELINKI 358 +D Y Y + L ISS G G+ +L+++I Sbjct: 126 GELPADFYEFYNLGFGELMAISSIHGLGMGDLLDEI 161 >gi|331658656|ref|ZP_08359600.1| ribosome-associated GTPase EngA [Escherichia coli TA206] gi|331054321|gb|EGI26348.1| ribosome-associated GTPase EngA [Escherichia coli TA206] Length = 396 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G + DTAG+R Sbjct: 217 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 276 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + D VEK + +T +E+A++++L+ I++++ IS Sbjct: 277 GKITDAVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 312 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 50/89 (56%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG DT GI T+ Sbjct: 18 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 77 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310 D VE +++ L +E AD++L + + S Sbjct: 78 DGVETRMAEQSLLAIEEADVVLFMVDARS 106 >gi|264679419|ref|YP_003279326.1| small GTP-binding protein [Comamonas testosteroni CNB-2] gi|262209932|gb|ACY34030.1| small GTP-binding protein [Comamonas testosteroni CNB-2] Length = 446 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 32/97 (32%), Positives = 55/97 (56%), Gaps = 3/97 (3%) Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 GE + ++ + G NAGKS+L N ++ + D+PGTTRD +T+ + G ++ Sbjct: 173 FGEEDQKPVRLAVAGRPNAGKSTLINTWLGEERLVAFDMPGTTRDAITVPFERNGQKFEL 232 Query: 272 SDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305 DTAG+R + +EK + +T +E A+++LLL Sbjct: 233 IDTAGLRRKGKVFEAIEKFSVVKTLQAIEGANVVLLL 269 Score = 40.4 bits (93), Expect = 0.51, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 I ++G N GKS+LFN L K AIV D G TRD + + DT G + Sbjct: 5 IALVGRPNVGKSTLFNRLTKSRDAIVADFAGLTRDRHYGQGRQGKHEYIVIDTGGFEPDA 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 + KE K+T V AD+++ + Sbjct: 65 SRGIFKEMAKQTQQAVAEADVVIFV 89 >gi|254283197|ref|ZP_04958165.1| GTP-binding protein EngA [gamma proteobacterium NOR51-B] gi|219679400|gb|EED35749.1| GTP-binding protein EngA [gamma proteobacterium NOR51-B] Length = 472 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 34/91 (37%), Positives = 51/91 (56%), Gaps = 3/91 (3%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 G ++ +G N GKS+L N L D +V D PGTTRD + ID + G + DTAG+ Sbjct: 174 GGIRVAAIGRPNVGKSTLINRLLGDDRVVVFDEPGTTRDSIYIDFERRGQAYTLIDTAGV 233 Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLL 305 R ++ VEK I +T + +A +++LL Sbjct: 234 RRRKNVRETVEKFSIVKTLKAIADAHVVILL 264 Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 44/84 (52%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V ++ G TRD D + + DT GI + Sbjct: 5 VALVGRPNVGKSTLFNQLTRTRDALVANLSGLTRDRQYGDGKVGAVPYIVIDTGGISGDE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ ++ +E AD++LL+ Sbjct: 65 SGIDAAMAGQSQTAIEEADIVLLM 88 >gi|167749166|ref|ZP_02421293.1| hypothetical protein EUBSIR_00117 [Eubacterium siraeum DSM 15702] gi|167657844|gb|EDS01974.1| hypothetical protein EUBSIR_00117 [Eubacterium siraeum DSM 15702] gi|291530430|emb|CBK96015.1| ribosome-associated GTPase EngA [Eubacterium siraeum 70/3] Length = 439 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 54/88 (61%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ ++G NAGKSSL N +A + IV++I GTTRD + ++ +G + DTAGIR Sbjct: 179 KVAVIGKPNAGKSSLVNKIAGEQRMIVSNIAGTTRDAVDTVIERDGQEYVLIDTAGIRRK 238 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +EK + R ++ V+ AD+ +++ Sbjct: 239 SKVNEQIEKYSVLRAYMAVDRADVCVIM 266 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 51/90 (56%), Gaps = 1/90 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + ++G N GKS+LFN + K ++IV D PG TRD + + G + DT GI ++ Sbjct: 5 VAVVGRPNVGKSTLFNRIVGKRMSIVDDTPGVTRDRIYAKAEWLGKEFMLVDTGGIEPDS 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310 D++ + + L ++ AD+I+ + ++ S Sbjct: 65 KDVILSQMRMQAQLAIDKADVIIFVTDVTS 94 >gi|122700829|emb|CAL88003.1| GTPase [Helicobacter pylori] gi|122700843|emb|CAL88010.1| GTPase [Helicobacter pylori] Length = 170 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/102 (40%), Positives = 59/102 (57%), Gaps = 4/102 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L GY V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI 320 ++ KE + +DLIL + K I S ++I + I Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREI 110 >gi|261867584|ref|YP_003255506.1| GTP-binding protein EngA [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412916|gb|ACX82287.1| GTP-binding protein EngA [Aggregatibacter actinomycetemcomitans D11S-1] Length = 510 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 59/231 (25%), Positives = 103/231 (44%), Gaps = 51/231 (22%) Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232 + D DFS EED L +++ + K KI I+G N GK Sbjct: 193 DEDFDFSNEEDTA------------LLDEELAQEQTPDK------KNIKIAIVGRPNVGK 234 Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGI 289 S+L N + +D +V D+PGTTRD + I ++ + + DTAG+R+ + VEK + Sbjct: 235 STLTNRILGEDRVVVYDLPGTTRDSIYIPMERDNQDYTLIDTAGVRKRGKVHLAVEKFSV 294 Query: 290 KRTFLEVENADLILLL---KEINSKKEISFPKNIDFI-------------FIGTKSDLYS 333 +T +++A+++LL+ +E S +++S + FI + G +++ + Sbjct: 295 IKTLQAIQDANVVLLVIDARENISDQDLSL---LGFILNAGRSLVIVVNKWDGLDTEVKN 351 Query: 334 TYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373 E D H IS+ G G+ L + IK +K+ S+ Sbjct: 352 RVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSIKEAYECATQKMTTSM 402 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 50/84 (59%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD L G+ + DT GI T+ Sbjct: 6 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHLAGHDFIVIDTGGIDGTE 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE++ +++ L +E AD++L L Sbjct: 66 EGVEEKMAEQSLLAIEEADIVLFL 89 >gi|240047358|ref|YP_002960746.1| GTP-binding protein EngA [Mycoplasma conjunctivae HRC/581] gi|239984930|emb|CAT04923.1| GTP-binding protein EngA [Mycoplasma conjunctivae] Length = 435 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 43/127 (33%), Positives = 69/127 (54%), Gaps = 15/127 (11%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 N +K+ I+G NAGKS+L N L K + +I ++IPGTTRD ++ + + ++I DTAGI Sbjct: 169 NLFKLAIIGKPNAGKSTLLNKLVKSERSITSNIPGTTRDSVSSKWVVNNHELEIVDTAGI 228 Query: 278 RETDDIVEK---EGIKRTFLEVENADLILLLKEINSKKEIS----------FPKNIDFIF 324 +VE + R F ++ ADL L++ +++ + +S F KN I Sbjct: 229 IRKSKVVESVDFYALLRAFNSLDEADLSLVI--VDASQPLSHFDSRLSGYAFEKNKPIIL 286 Query: 325 IGTKSDL 331 + K DL Sbjct: 287 VINKWDL 293 Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 78/165 (47%), Gaps = 31/165 (18%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI---- 277 + ++G N GKS+LFN + K +I +PG TRD + G I DT GI Sbjct: 5 VALIGKPNVGKSTLFNKIIGKKKSITDSMPGVTRDRIYAKTTWLGKTFNIIDTGGIEIEN 64 Query: 278 RETDDIVEKEGIKRTFLEVENADLILL-----------------LKEINSKKEISFPKNI 320 R D+++ + + + +E A +I+L L ++KK + + Sbjct: 65 RTFQDLIQMQ----SKVAIEEAQVIVLVLDGQNAIDSDDYYVVDLLRKSNKKVLVVANKL 120 Query: 321 DFIFIGTKSDLYSTYTEEYDHL--ISSFTGEGLEELINKIKSILS 363 + G KS S Y+ ++H+ IS+ GEG+ +L+++I + +S Sbjct: 121 E----GRKSFDTSIYSLGFEHIFPISAIHGEGVGDLLDEIIANMS 161 >gi|319406081|emb|CBI79711.1| GTP-binding protein [Bartonella sp. AR 15-3] Length = 477 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 54/186 (29%), Positives = 92/186 (49%), Gaps = 29/186 (15%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS+LFN L + +A+V D PG TRD + + DTAG+ ++D Sbjct: 5 IAIVGRPNVGKSTLFNRLVGQKLALVDDQPGVTRDRRIHSAKFQDLHFNVIDTAGLEKSD 64 Query: 282 D-IVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF-----------IFIGTKS 329 + +E +T + + ADLIL + +++K I+ P ++DF + + KS Sbjct: 65 NHTLEGRMRSQTKIAIAEADLILFV--LDAKSGIT-PSDLDFSSLIRKSGKPIVLVANKS 121 Query: 330 DLYSTYTEEYDH---------LISSFTGEGLEELINKI-KSILSNKFKKLPFSIPSHKRH 379 + + EY+ LIS+ G+GL +L + I +I ++K F++ K Sbjct: 122 ESKAAIGGEYEAWSLGLGEPCLISAEHGQGLSDLRDAIVAAIGTDKI----FNLRREKEK 177 Query: 380 LYHLSQ 385 +Y +Q Sbjct: 178 VYTAAQ 183 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 38/66 (57%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I I+G N GKS+L N++ +D + G TRD +++D + +K+ DTAG+R Sbjct: 208 RIAIVGRPNTGKSTLINSMLGQDRLLTGSEAGITRDSVSVDWEWNNRRIKLFDTAGLRRK 267 Query: 281 DDIVEK 286 + EK Sbjct: 268 SKVQEK 273 >gi|269114942|ref|YP_003302705.1| GTP-binding protein engA [Mycoplasma hominis] gi|268322567|emb|CAX37302.1| GTP-binding protein engA [Mycoplasma hominis ATCC 23114] Length = 441 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/105 (34%), Positives = 68/105 (64%), Gaps = 6/105 (5%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 +K+ +LG +N GKS+L N LA ++ +IV+++ GTTRD ++ + + G + ++ DTAGI+ Sbjct: 175 FKLALLGKTNVGKSTLLNTLANEERSIVSNVEGTTRDSVSSLIKINGEIFEVVDTAGIKR 234 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS-FPKNI 320 + VE + R +E+A+L LL+ +++ +E+S F +N+ Sbjct: 235 KSKLTESVEHYALMRANQSIEDANLCLLV--LDATEEVSHFSQNV 277 Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 1/91 (1%) Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274 ++RN + I+G N GKS+LFN + K +IV D PG TRD L D G ++ DT Sbjct: 1 MMRNNI-VAIIGKPNVGKSTLFNKIINKRKSIVYDTPGVTRDRLYEDAIWTGKKFRVVDT 59 Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLL 305 GI D+ +K+ + + ++ A++I+ L Sbjct: 60 GGITIEDEDFKKQIKLQAQIAIDEANVIVFL 90 >gi|237745515|ref|ZP_04575995.1| GTP-binding protein engA [Oxalobacter formigenes HOxBLS] gi|229376866|gb|EEO26957.1| GTP-binding protein engA [Oxalobacter formigenes HOxBLS] Length = 445 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 32/98 (32%), Positives = 61/98 (62%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ ++G N GKS++ NAL ++ I D+PGTTRD + I + +G + DTAG+R+ Sbjct: 182 RLAVVGRPNVGKSTMINALLGEERVIAFDLPGTTRDAIEIPFERDGKHYTLVDTAGLRKR 241 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + +EK + +T + A+++LLL ++++++IS Sbjct: 242 GKVFQAIEKFSVVKTLQAISEANVVLLL--LDAQQDIS 277 Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 9/89 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L + A+V D PG TRD + + + DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRAALVADYPGLTRDRHYGEGRMGDRPFLVIDTGGF---- 60 Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305 + V KEG+ K+T V +D+++ + Sbjct: 61 EPVVKEGVLQEMAKQTKQAVAESDVVVFM 89 >gi|114562298|ref|YP_749811.1| GTP-binding protein EngA [Shewanella frigidimarina NCIMB 400] gi|122300418|sp|Q085U2|DER_SHEFN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|114333591|gb|ABI70973.1| small GTP-binding protein [Shewanella frigidimarina NCIMB 400] Length = 488 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 K+ I+G N GKS+L N + ++ +V D PGTTRD + I + EG + DTAG+R Sbjct: 201 KLAIIGKPNVGKSTLINRILGEERVVVYDEPGTTRDSIYIPMSREGREYVLIDTAGVRRR 260 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + ++++EK + +T VE+A+++LL+ I++++ I+ Sbjct: 261 SKVNEVIEKFSVIKTLKAVEDANVVLLV--IDAREGIA 296 Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 50/89 (56%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD L GY + DT GI ++ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAFLAGYEFIVVDTGGIDGSE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310 + +E + +++ +E AD++L + + + Sbjct: 65 EGIETKMAEQSLAAIEEADVVLFMTDARA 93 >gi|108563245|ref|YP_627561.1| GTP-binding protein EngA [Helicobacter pylori HPAG1] gi|122980493|sp|Q1CT35|DER_HELPH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|107837018|gb|ABF84887.1| GTP-binding protein-like protein [Helicobacter pylori HPAG1] Length = 461 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L GY V++ DT G+ + D Sbjct: 11 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMAK-D 69 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 70 ALLSKEIKALNLKAAQMSDLIL 91 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 49/178 (27%), Positives = 87/178 (48%), Gaps = 25/178 (14%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSL NAL KK+ ++V+ + GTT D + + + + DTAGIR Sbjct: 201 QVGIIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVDTAGIRHR 260 Query: 281 DDI--VEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330 I +EK ++RT +E + + LL+ ++++ ++ ++ I I K D Sbjct: 261 SKILGIEKYALERTQKALEKSHIALLVLDVSAPFVELDEKISSLADKHSLGIILILNKWD 320 Query: 331 L-YSTYTE------------EYDHLI--SSFTGEGLEELINKIKSILSNKFKKLPFSI 373 + Y+ Y E EY +I S ++E+ +KI + K++P S+ Sbjct: 321 IRYAPYEEIMETLKRKFRFLEYAPVITTSCLKARHIDEIKHKIIEVYECFSKRIPTSL 378 >gi|297617642|ref|YP_003702801.1| ribosome-associated GTPase EngA [Syntrophothermus lipocalidus DSM 12680] gi|297145479|gb|ADI02236.1| ribosome-associated GTPase EngA [Syntrophothermus lipocalidus DSM 12680] Length = 442 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 47/179 (26%), Positives = 81/179 (45%), Gaps = 29/179 (16%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I ++G N GKSSL N L ++ IV++IPGTTRD + G + DTAGIR Sbjct: 178 RIALVGRPNVGKSSLLNRLIGEERVIVSEIPGTTRDAIDTPFRYGGNRYVLIDTAGIRRK 237 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLY----- 332 I E+ + R VE +D++L++ + + K F+ KS++ Sbjct: 238 SRIKEPTERYSVLRALRAVERSDVVLIILDATERVTEQDKKIAGFVHEAGKSNIIIVNKW 297 Query: 333 ------STYTEEYDHL---------------ISSFTGEGLEELINKIKSILSNKFKKLP 370 +E+D L IS+ TG+ ++++I + + ++K+P Sbjct: 298 DLVKKTERTMKEFDDLIREELKFLAYSPILYISALTGQRVKQVIEVVDFVAEQYWRKVP 356 Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 34/85 (40%), Positives = 50/85 (58%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + ++G N GKS+LFN +A AIV D PG TRD + + G + DT GIR E Sbjct: 6 VALVGRPNVGKSTLFNRMAGLRKAIVEDTPGVTRDRIYEQAEWAGREFIVVDTGGIRFEE 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 DI+ E K++ L +E AD+I+++ Sbjct: 66 GDILAPEVKKQSELAIEEADVIVMV 90 >gi|253988871|ref|YP_003040227.1| GTP-binding protein EngA [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780321|emb|CAQ83482.1| gtp-binding protein enga (double era-like domain protein) [Photorhabdus asymbiotica] Length = 499 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G + DTAG+R+ Sbjct: 214 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 273 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + VEK + +T +E+A+++LL+ I++++ IS Sbjct: 274 GKVTETVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 309 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 50/169 (29%), Positives = 81/169 (47%), Gaps = 28/169 (16%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG I DT GI T+ Sbjct: 10 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGQEFIIIDTGGIDGTE 69 Query: 282 DIVEKEGIKRTFLEVENADLILLL---------------KEINSKKEISF--PKNIDFIF 324 D VE ++ + +E AD++L + K + S+++ +F D I Sbjct: 70 DGVETHMAAQSLMAIEEADIVLFMVDARAGLMPADHAIAKHLRSREKATFLVANKTDGID 129 Query: 325 IGTK-SDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372 I T ++ YS + + I++ G G+ +LI ++ LPFS Sbjct: 130 IDTSIAEFYSLGLGDI-YSIAASHGRGVTQLIERV---------LLPFS 168 >gi|122702447|emb|CAL88414.1| GTPase [Helicobacter pylori] Length = 170 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L GY V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|34541718|ref|NP_906197.1| GTP-binding protein EngA [Porphyromonas gingivalis W83] gi|188994055|ref|YP_001928307.1| GTP-binding protein EngA [Porphyromonas gingivalis ATCC 33277] gi|41017000|sp|Q7MT48|DER_PORGI RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|34398036|gb|AAQ67096.1| GTP-binding protein, Era/ThdF family [Porphyromonas gingivalis W83] gi|188593735|dbj|BAG32710.1| GTP-binding protein EngA [Porphyromonas gingivalis ATCC 33277] Length = 437 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/88 (40%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I I+G NAGKSSL NA +D IVTDI GTTRD + + G + DTAGIR+ Sbjct: 178 RIAIVGRPNAGKSSLLNAFIGEDRHIVTDIAGTTRDSIYTKYNKFGLNFYLVDTAGIRKR 237 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E + R+ +EN+D+ +L+ Sbjct: 238 GKVNEDLEYYSVIRSIRAIENSDVCVLM 265 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 1/90 (1%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277 G + I+G N GKS+LFN L + AIV + GTTRD + G I DT G + Sbjct: 2 GALVAIVGRPNVGKSTLFNRLTQSRQAIVAEEAGTTRDRQYGRVHWNGREFSIVDTGGWV 61 Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKE 307 ++D+ E+E K+ ++ VE AD++L + + Sbjct: 62 VNSEDVFEEEINKQVYIAVEEADVVLFVAD 91 >gi|319404573|emb|CBI78179.1| GTP-binding protein [Bartonella rochalimae ATCC BAA-1498] Length = 477 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 55/186 (29%), Positives = 90/186 (48%), Gaps = 29/186 (15%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS+LFN L + +A+V D PG TRD L+ + DTAG+ E D Sbjct: 5 IAIVGRPNVGKSTLFNRLVGQKLALVDDQPGVTRDRRIHSAKLQDLHFDVIDTAGLEEAD 64 Query: 282 D-IVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF-----------IFIGTKS 329 + +E +T + ++ ADLIL + +++K I+ P ++DF + + KS Sbjct: 65 NHTLEGRMRAQTKIAIDEADLILFV--LDAKSGIT-PSDLDFSSLIRKSGKPIVLVSNKS 121 Query: 330 DLYSTYTEEYDHL---------ISSFTGEGLEELINKI-KSILSNKFKKLPFSIPSHKRH 379 + + EY+ IS+ G GL +L + I +I ++K F++ K Sbjct: 122 ESKTAIAGEYEAWSLGLGEPCPISAEHGHGLSDLRDAIVAAIGADKV----FNLRQEKEK 177 Query: 380 LYHLSQ 385 Y +Q Sbjct: 178 TYTTAQ 183 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 39/66 (59%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I ++G N GKS+L N++ K+D + G TRD +++D + +K+ DTAG+R Sbjct: 208 RIAVVGRPNTGKSTLINSMLKQDRLLTGPEAGITRDSISVDWEWNNRRIKLFDTAGLRRK 267 Query: 281 DDIVEK 286 + EK Sbjct: 268 SKVQEK 273 >gi|163754018|ref|ZP_02161141.1| hypothetical protein KAOT1_20387 [Kordia algicida OT-1] gi|161326232|gb|EDP97558.1| hypothetical protein KAOT1_20387 [Kordia algicida OT-1] Length = 434 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G NAGKSSL NAL +D IVTDI GTTRD + + G+ + DTAGIR Sbjct: 176 RFAVVGRPNAGKSSLINALIGEDRYIVTDIAGTTRDAIDTKYNRFGFEFNLVDTAGIRRK 235 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E + R+ +E++D+ LL+ Sbjct: 236 AKVKEDLEFYSVMRSIRAIEHSDVCLLV 263 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/90 (37%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 + I+G N GKS+LFN + K+ AIV + G TRD D G + DT G + + Sbjct: 5 VAIVGRPNVGKSTLFNRMIKRREAIVDSVSGVTRDRHYGKSDWNGKEFSLIDTGGYVVGS 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310 DDI E+E K+ L ++ AD IL + ++ S Sbjct: 65 DDIFEQEIDKQVELAIDEADAILFVVDVES 94 >gi|120598182|ref|YP_962756.1| GTP-binding protein EngA [Shewanella sp. W3-18-1] gi|166225859|sp|A1RHQ7|DER_SHESW RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|120558275|gb|ABM24202.1| small GTP-binding protein [Shewanella sp. W3-18-1] Length = 488 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 55/88 (62%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 K+ I+G N GKS+L N + ++ +V D PGTTRD + I ++ EG I DTAG+R Sbjct: 200 KLAIIGKPNVGKSTLTNRILGEERVVVYDEPGTTRDSIYIPMEREGREYVIIDTAGVRRR 259 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305 + ++EK + +T VE+A+++LL+ Sbjct: 260 SKVHQVIEKFSVIKTLKAVEDANVVLLI 287 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 50/89 (56%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD L GY + DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAFLSGYEFIVVDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310 + +E + +++ +E AD++L + + + Sbjct: 65 EGIETKMAEQSLAAIEEADVVLFMTDARA 93 >gi|146293744|ref|YP_001184168.1| GTP-binding protein EngA [Shewanella putrefaciens CN-32] gi|166225857|sp|A4Y8T6|DER_SHEPC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|145565434|gb|ABP76369.1| small GTP-binding protein [Shewanella putrefaciens CN-32] gi|319427118|gb|ADV55192.1| ribosome-associated GTPase EngA [Shewanella putrefaciens 200] Length = 488 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 55/88 (62%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 K+ I+G N GKS+L N + ++ +V D PGTTRD + I ++ EG I DTAG+R Sbjct: 200 KLAIIGKPNVGKSTLTNRILGEERVVVYDEPGTTRDSIYIPMEREGREYVIIDTAGVRRR 259 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305 + ++EK + +T VE+A+++LL+ Sbjct: 260 SKVHQVIEKFSVIKTLKAVEDANVVLLI 287 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 50/89 (56%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD L GY + DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAFLSGYEFIVVDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310 + +E + +++ +E AD++L + + + Sbjct: 65 EGIETKMAEQSLAAIEEADVVLFMTDARA 93 >gi|225620645|ref|YP_002721903.1| putative GTP-binding protein [Brachyspira hyodysenteriae WA1] gi|225215465|gb|ACN84199.1| putative GTP-binding protein [Brachyspira hyodysenteriae WA1] Length = 501 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/105 (36%), Positives = 61/105 (58%), Gaps = 5/105 (4%) Query: 209 QGKLGEII--RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266 Q +L E I + I I+G NAGKS+L N L KD +IV++I GTTRD + + +G Sbjct: 225 QYRLDEYIAQKKTINIAIVGKPNAGKSTLLNTLIGKDRSIVSNIAGTTRDAIDETFNFKG 284 Query: 267 YLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEI 308 + + DTAGIR+ ++ VE + R +E +D+ +L+ ++ Sbjct: 285 DDICLVDTAGIRKKKNVNTDVEYYSVNRAIKAIEASDVCILMLDV 329 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 70/141 (49%), Gaps = 12/141 (8%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKS+LFN A + +IV + G TRD+ ++ + DT G+ + Sbjct: 4 IAILGRPNVGKSTLFNRFAGRRKSIVDPMAGVTRDISIAKTYIDDIEFNVFDTGGLLDVS 63 Query: 282 DIVEKEGIKRTFLE--VENADLILLLKEINSKKEISFPKNIDFIFIGTKSD------LYS 333 D E ++ L+ +E++D++L L + + S P + FI I KS + Sbjct: 64 DDTLNEKVREKALKTALEDSDILLFLVDAHQ----SHPDDRHFINIIRKSGKPIILVINK 119 Query: 334 TYTEEYDHLISSFTGEGLEEL 354 + +++L+S F G++++ Sbjct: 120 VDADSHNNLVSEFYSLGIKDV 140 >gi|149194988|ref|ZP_01872081.1| GTP-binding protein EngA [Caminibacter mediatlanticus TB-2] gi|149134909|gb|EDM23392.1| GTP-binding protein EngA [Caminibacter mediatlanticus TB-2] Length = 460 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/87 (43%), Positives = 51/87 (58%), Gaps = 2/87 (2%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKSSL NAL + AIV+DI GTT D + + GY + DTAGIR Sbjct: 199 KVAIVGRVNVGKSSLLNALVGSERAIVSDIDGTTIDPIDETIYFNGYHITFVDTAGIRRR 258 Query: 281 DDI--VEKEGIKRTFLEVENADLILLL 305 I +EK + RT +E AD+ +L+ Sbjct: 259 SKIKDIEKYALMRTEKVLEEADVAILV 285 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 87/169 (51%), Gaps = 26/169 (15%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD----VLTIDLDLEGYLVKISDTAG 276 K+ ILG N GKSS FN + ++ AIV++ GTTRD V+++D DLE + + DT G Sbjct: 3 KVAILGKPNVGKSSFFNRIIRERDAIVSEKAGTTRDIKKRVVSLDDDLEEII--LIDTGG 60 Query: 277 IRETDDIVEKEGIKRTFLEV-ENADLILLL---KEINSKKEISFPK-----NIDFIFIGT 327 + E D++ K +K EV + ADLIL + + I ++EI + + N I + Sbjct: 61 LEERDELFNK--VKEKAFEVAKEADLILYMVDGRTIPDEEEIKYFRKLQKLNKPLILVVN 118 Query: 328 KSD-------LYSTYTEEYDHL--ISSFTGEGLEELINKIKSILSNKFK 367 K D +Y Y+ D + IS G+ +LI +IK + K K Sbjct: 119 KVDNDKLMEGVYDFYSLGADEVFPISIAHNRGVGKLIERIKEFVPKKQK 167 >gi|322831770|ref|YP_004211797.1| ribosome-associated GTPase EngA [Rahnella sp. Y9602] gi|321166971|gb|ADW72670.1| ribosome-associated GTPase EngA [Rahnella sp. Y9602] Length = 494 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 34/84 (40%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L K A+V D PG TRD ++EG I DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTKTRDALVADFPGLTRDRKYGRAEIEGNEFIIVDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 D VE ++ L +E AD++L + Sbjct: 65 DGVETRMAGQSLLAIEEADIVLFM 88 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 61/98 (62%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I + + + DTAG+R+ Sbjct: 208 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMVRDEREYVLIDTAGVRKR 267 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + VEK + +T +E+A++++L+ I++++ IS Sbjct: 268 GKVTETVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 303 >gi|294776607|ref|ZP_06742076.1| small GTP-binding protein domain protein [Bacteroides vulgatus PC510] gi|294449522|gb|EFG18053.1| small GTP-binding protein domain protein [Bacteroides vulgatus PC510] Length = 396 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 54/167 (32%), Positives = 82/167 (49%), Gaps = 20/167 (11%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDTA 275 N IV+ G N+GKSSL NAL +D A+V+DIPGTT D ++ ++++ G + I DT Sbjct: 10 NRLHIVLFGKRNSGKSSLINALTGQDTALVSDIPGTTTDAVSKAMEIQHIGPCLFI-DTP 68 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEI-NSKKEISF-----PKNIDFIFIGTKS 329 G + ++ E I RT +E D+ LLL E N + E + +NI I I K+ Sbjct: 69 GFDDEGELGEMR-ITRTLKAIERTDIALLLCEDGNCEDEKQWMEQLNKRNIPVILILNKA 127 Query: 330 DLYSTYTEEYDH----------LISSFTGEGLEELINKIKSILSNKF 366 D+ D +IS+ G+E+++ I L F Sbjct: 128 DIRKDIASTRDCIEKECGQNPLIISAKEQTGIEKILQAILEKLPADF 174 >gi|260221255|emb|CBA29636.1| GTP-binding protein engA [Curvibacter putative symbiont of Hydra magnipapillata] Length = 445 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 53/88 (60%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ + G N GKS+L N ++ + D+PGTTRD +++ + EG ++ DTAG+R+ Sbjct: 181 KLAVAGRPNVGKSTLINTWLGEERLVAFDMPGTTRDAISVPFEREGQKFELVDTAGLRKK 240 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +EK + +T +E+A ++LLL Sbjct: 241 GKVFEAIEKFSVVKTLQAIESASVVLLL 268 Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust. Identities = 19/35 (54%), Positives = 22/35 (62%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 I ++G N GKS+LFN L K AIV D G TRD Sbjct: 5 IALVGRPNVGKSTLFNRLTKTRDAIVADYAGLTRD 39 >gi|257784531|ref|YP_003179748.1| small GTP-binding protein [Atopobium parvulum DSM 20469] gi|257473038|gb|ACV51157.1| small GTP-binding protein [Atopobium parvulum DSM 20469] Length = 441 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 34/87 (39%), Positives = 53/87 (60%), Gaps = 3/87 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKSSL N LA K +IV+D+ GTTRD + ++ +G +++ DTAGIR+ Sbjct: 181 LAIIGRPNVGKSSLANRLANKKRSIVSDVAGTTRDAIDTMIEWKGTPIRLVDTAGIRKKS 240 Query: 282 DI---VEKEGIKRTFLEVENADLILLL 305 + VE + R ++ AD+ LL+ Sbjct: 241 QVHEDVEYYSLVRGLQAMDRADICLLV 267 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 2/86 (2%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--E 279 + I+G N GKS+L N +A+K AIV + G TRD D D G K+ DT GI + Sbjct: 6 VAIVGRPNVGKSTLVNRIAEKRDAIVHESRGVTRDRSYHDADWNGREFKLIDTGGIESIK 65 Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305 + D ++ L + AD+I+ + Sbjct: 66 SQDRFAPHIREQALLACDEADVIVFV 91 >gi|257892054|ref|ZP_05671707.1| tRNA modification GTPase TrmE [Enterococcus faecium 1,231,410] gi|257828414|gb|EEV55040.1| tRNA modification GTPase TrmE [Enterococcus faecium 1,231,410] Length = 121 Score = 62.8 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 44/117 (37%), Positives = 66/117 (56%), Gaps = 9/117 (7%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFIC----KKKKPFPRKASLRYFFGLD-- 57 E +TI A+ST AISI+RLSG Q+ + + K+ P ++ Y +D Sbjct: 7 EFDTIAAISTPPGEGAISIVRLSGDQAVQLADKVYQSGNKRLSEVPSH-TIHYGHIVDPK 65 Query: 58 -GRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEF 113 +++D+ ++ V +P++FT ED E + HGGI VVN IL+ L + RLA PGEF Sbjct: 66 SNQLVDEVMVSVMRAPKTFTREDVVEINCHGGIVVVNQILQLLLR-EGARLAEPGEF 121 >gi|122702759|emb|CAL88569.1| GTPase [Helicobacter pylori] Length = 170 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L GY V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|229815385|ref|ZP_04445720.1| hypothetical protein COLINT_02432 [Collinsella intestinalis DSM 13280] gi|229809165|gb|EEP44932.1| hypothetical protein COLINT_02432 [Collinsella intestinalis DSM 13280] Length = 445 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 54/88 (61%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G NAGKSSLFN + D +IV++I GTTRD + ++ +G ++ DTAGIR+ Sbjct: 181 RVAIIGRPNAGKSSLFNKMIGNDRSIVSNIAGTTRDAIDTVVERDGKRYRMVDTAGIRKK 240 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E + R ++ AD+ LL+ Sbjct: 241 STVYENIEYYSMVRGLRAIDRADVALLV 268 Score = 37.7 bits (86), Expect = 3.7, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 2/64 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--E 279 + I+G N GKS+L N +A+ AIV G TRD D G + DT GI + Sbjct: 6 VAIVGRPNVGKSTLVNRIAQTSDAIVHQSRGVTRDRSYHVADWNGREFMLVDTGGIEPMK 65 Query: 280 TDDI 283 +DD+ Sbjct: 66 SDDV 69 >gi|122700823|emb|CAL88000.1| GTPase [Helicobacter pylori] Length = 170 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L GY V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|146312646|ref|YP_001177720.1| GTP-binding protein EngA [Enterobacter sp. 638] gi|166920100|sp|A4WD89|DER_ENT38 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|145319522|gb|ABP61669.1| small GTP-binding protein [Enterobacter sp. 638] Length = 490 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 62/98 (63%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + +D +V D+PGTTRD + I + + + DTAG+R+ Sbjct: 204 KLAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMQRDEREYVLIDTAGVRKR 263 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D+VEK + +T +E+A++++L+ I++++ IS Sbjct: 264 GKITDVVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 299 Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 D VE +++ L +E AD++L + Sbjct: 65 DGVETRMAEQSLLAIEEADIVLFM 88 >gi|292806562|gb|ADE42411.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L GY V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNHLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702277|emb|CAL88329.1| GTPase [Helicobacter pylori] Length = 170 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/84 (42%), Positives = 51/84 (60%), Gaps = 1/84 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L GY V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ KE + +DLIL + Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYI 92 >gi|160931619|ref|ZP_02079014.1| hypothetical protein CLOLEP_00451 [Clostridium leptum DSM 753] gi|156869490|gb|EDO62862.1| hypothetical protein CLOLEP_00451 [Clostridium leptum DSM 753] Length = 440 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 54/88 (61%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 ++ ++G NAGKSSL N +A +D IV+DI GTTRD + ++ + + DTAGIR Sbjct: 179 RVAVIGKPNAGKSSLINQIAGEDRCIVSDIAGTTRDAIDTQIENDYGRFTLIDTAGIRRK 238 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305 DD +EK + R + ++ +D+ +++ Sbjct: 239 SRVDDEIEKYSVIRAQMAIDRSDVCVIM 266 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 54/90 (60%), Gaps = 1/90 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280 + I+G N GKS+LFN L + VAIV D PG TRD + + + V + DT GI + Sbjct: 6 VAIVGRPNVGKSTLFNKLIGQRVAIVNDTPGVTRDRIYGECEWRSRKVTLVDTGGIEPYS 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310 DD++ + ++ L ++ AD+I+L+ ++ + Sbjct: 66 DDVILSQMRRQAELAIDTADVIVLVTDVKT 95 >gi|46203982|ref|ZP_00209197.1| COG0486: Predicted GTPase [Magnetospirillum magnetotacticum MS-1] Length = 132 Score = 62.8 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 38/118 (32%), Positives = 67/118 (56%), Gaps = 1/118 (0%) Query: 323 IFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH 382 + + TK+DL + E IS+ TG GL+ L++ I++ ++ + +RH Sbjct: 16 LVVQTKADLAAGGAEPQGLAISAVTGAGLDALLDAIQAAAEASLGHGD-ALITRERHREA 74 Query: 383 LSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L++ ++LE +++AE+LRLA +LG++ G V VE++LD +F+ FCIGK Sbjct: 75 LTRAAQHLERLITAPSGFPPELLAEDLRLAVRALGEVGGHVGVEEMLDRLFAGFCIGK 132 >gi|303327492|ref|ZP_07357933.1| ribosome-associated GTPase EngA [Desulfovibrio sp. 3_1_syn3] gi|302862432|gb|EFL85365.1| ribosome-associated GTPase EngA [Desulfovibrio sp. 3_1_syn3] Length = 452 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/113 (34%), Positives = 59/113 (52%), Gaps = 3/113 (2%) Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254 +I L D+++ + +G + ++ +LG NAGKSSL NALA ++ IV+D+ GTT Sbjct: 165 NINALCEDLAALLPEGAVEPPAPPALRLAMLGRPNAGKSSLINALAGEERMIVSDVAGTT 224 Query: 255 RDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILL 304 RD + + +G DTAG+R D VEK + AD+ LL Sbjct: 225 RDSVDVRFRRDGQDYVFVDTAGVRRRTRITDSVEKYSVNAAIKSSTKADVTLL 277 Score = 43.1 bits (100), Expect = 0.086, Method: Compositional matrix adjust. Identities = 26/63 (41%), Positives = 34/63 (53%), Gaps = 13/63 (20%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK-------ISDT 274 IV++G N GKS+LFN L + + AI D PG TRD +EG + + I DT Sbjct: 8 IVLVGRPNVGKSTLFNRLIRSNRAITHDRPGVTRD------RMEGVVRRKDLPSFGIVDT 61 Query: 275 AGI 277 GI Sbjct: 62 GGI 64 >gi|122701551|emb|CAL88165.1| GTPase [Helicobacter pylori] Length = 170 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L GY V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|99905859|gb|ABF68624.1| YphC [Helicobacter pylori] Length = 170 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L GY V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 TLLSKEIKALNLKAAQMSDLIL 90 >gi|127512226|ref|YP_001093423.1| GTP-binding protein EngA [Shewanella loihica PV-4] gi|166225856|sp|A3QCG6|DER_SHELP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|126637521|gb|ABO23164.1| small GTP-binding protein [Shewanella loihica PV-4] Length = 489 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 86/182 (47%), Gaps = 31/182 (17%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D PGTTRD + I L+ +G I DTAG+R Sbjct: 201 KLAIIGKPNVGKSTLTNRILGEERVVVYDEPGTTRDSIYIPLERDGQEYVIIDTAGVRRR 260 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS--------FPKNIDFIFI---- 325 + VEK + +T VE+A+++LL+ +++++ I+ F N+ + Sbjct: 261 SKVHETVEKFSVIKTLKAVEDANVVLLV--VDAREGIAEQDLGLLGFALNVGRALVIAVN 318 Query: 326 ---GTKSDLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPF 371 G D+ E D H IS+ G G+ L ++ + +++ Sbjct: 319 KWDGIDQDVKERVKSELDRRLGFIDFARIHFISALHGTGVGHLFESVEEAYESATRRVST 378 Query: 372 SI 373 S+ Sbjct: 379 SM 380 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 49/89 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD L GY + DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADYPGLTRDRKYGRAHLSGYEFIVVDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310 + +E +++ +E AD++L L + + Sbjct: 65 EGIETRMAEQSLAAIEEADVVLFLTDARA 93 >gi|268593180|ref|ZP_06127401.1| ribosome-associated GTPase EngA [Providencia rettgeri DSM 1131] gi|291311226|gb|EFE51679.1| ribosome-associated GTPase EngA [Providencia rettgeri DSM 1131] Length = 492 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 47/154 (30%), Positives = 75/154 (48%), Gaps = 19/154 (12%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG+ I DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGHEFIIIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL---------------KEINSKKEISF--PKNIDFIF 324 + VE ++ +E AD++L + K + S+K+ ++ D I Sbjct: 65 EGVETHMAAQSLQAIEEADIVLFMVDARAGLMPADEGIAKHLRSRKKKTYLVANKTDGID 124 Query: 325 IGTK-SDLYSTYTEEYDHLISSFTGEGLEELINK 357 + T D YS E H I++ G G+ +LI + Sbjct: 125 VTTAIGDFYSLGLGEI-HPIAASHGRGVTQLIEQ 157 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/98 (34%), Positives = 62/98 (63%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ + + DTAG+R+ Sbjct: 207 KLAIVGRPNVGKSTLTNRILGEERVVVFDMPGTTRDSIYIPMERDEREYILIDTAGVRKR 266 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + VEK + +T +E+A+++LL+ I++++ IS Sbjct: 267 GKVTETVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 302 >gi|122702281|emb|CAL88331.1| GTPase [Helicobacter pylori] Length = 170 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/84 (42%), Positives = 51/84 (60%), Gaps = 1/84 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L GY V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ KE + +DLIL + Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYI 92 >gi|122700839|emb|CAL88008.1| GTPase [Helicobacter pylori] Length = 170 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L GY V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122700881|emb|CAL88029.1| GTPase [Helicobacter pylori] Length = 170 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L GY V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|157165129|ref|YP_001466229.1| GTP-binding protein EngA [Campylobacter concisus 13826] gi|166224319|sp|A7ZBS1|DER_CAMC1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|112801522|gb|EAT98866.1| GTP-binding protein EngA [Campylobacter concisus 13826] Length = 462 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 55/85 (64%), Gaps = 1/85 (1%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K++++G N GKSSLFN LA++ +AI +D+ GTTRD +++EG + D+ G+ ++ Sbjct: 3 KVILVGKPNVGKSSLFNRLARRRIAITSDVSGTTRDTNKAKIEVEGKECILIDSGGLDDS 62 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 ++ K +T E +N+D+IL + Sbjct: 63 SELF-KNVKAKTLAEAKNSDVILYM 86 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/87 (39%), Positives = 53/87 (60%), Gaps = 2/87 (2%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSL NAL K+ A+V+D+ GTT D + + +G + + DTAGIR+ Sbjct: 199 RVGIIGRVNVGKSSLLNALVKESRAVVSDVAGTTIDPVNEIYEHDGRVFEFVDTAGIRKR 258 Query: 281 DDI--VEKEGIKRTFLEVENADLILLL 305 I +E+ + RT +E D+ LL+ Sbjct: 259 GKIEGIERYALNRTEKILEETDVALLV 285 >gi|310659189|ref|YP_003936910.1| GTPase involved in ribosome synthesis and maintenance [Clostridium sticklandii DSM 519] gi|308825967|emb|CBH22005.1| GTPase involved in ribosome synthesis and maintenance [Clostridium sticklandii] Length = 438 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 37/110 (33%), Positives = 61/110 (55%), Gaps = 3/110 (2%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L +++ + Q E+ + K+ I+G NAGKSS+ N L ++ IV+ I GTTRD + Sbjct: 155 LLDEVVKNFPQDMDTELDEDVVKVAIVGKPNAGKSSILNRLIGEERVIVSPIAGTTRDAI 214 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305 ++++G DTAGIR + +EK + R + VE AD++L + Sbjct: 215 DTYIEMDGKKYLFIDTAGIRRKSKVYENIEKYSVIRAYASVEKADVVLTV 264 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 50/85 (58%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFN +A + +AIV D PG TRD + + I DT GI ++ Sbjct: 5 VAIVGRPNVGKSTLFNRIAGERIAIVEDTPGVTRDRIYAQAEWVSKHFTIIDTGGIEPDS 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 ++++ K+ ++ L ++ A +IL + Sbjct: 65 EELIPKKMRQQAELAMDMAQVILFV 89 >gi|238916971|ref|YP_002930488.1| GTP-binding protein [Eubacterium eligens ATCC 27750] gi|259645875|sp|C4Z0C8|DER_EUBE2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|238872331|gb|ACR72041.1| GTP-binding protein [Eubacterium eligens ATCC 27750] Length = 441 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/108 (36%), Positives = 58/108 (53%), Gaps = 3/108 (2%) Query: 201 NDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260 +++ SH +G + + K+ I+G N GKSS+ N L K+ IV+DI GTTRD + Sbjct: 159 DEVVSHFPEGSDTDKEDDRPKVAIIGKPNVGKSSIINKLVGKNRVIVSDIAGTTRDAIDT 218 Query: 261 DLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305 + G DTAG+R I +E+ I RT VE AD+ +L+ Sbjct: 219 AIKYNGKEYVFIDTAGLRRKSKIKEDLERFSIIRTVAAVERADIAILV 266 Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 28/88 (31%), Positives = 53/88 (60%), Gaps = 1/88 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + ++G N GKS+LFN+L + ++IV D PG TRD + ++ + + DT GI +T Sbjct: 6 VAVVGRPNVGKSTLFNSLCGQQISIVKDTPGVTRDRIYAEVSWLNHNFTLIDTGGIEPDT 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308 DI+ + ++ + +E AD+I+ + ++ Sbjct: 66 GDIILSQMREQAEIAIETADVIIFMTDV 93 >gi|122700889|emb|CAL88033.1| GTPase [Helicobacter pylori] Length = 170 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L GY V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122700833|emb|CAL88005.1| GTPase [Helicobacter pylori] Length = 170 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L GY V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|288924558|ref|ZP_06418495.1| ribosome-associated GTPase EngA [Prevotella buccae D17] gi|315607420|ref|ZP_07882416.1| ribosome-associated GTPase EngA [Prevotella buccae ATCC 33574] gi|288338345|gb|EFC76694.1| ribosome-associated GTPase EngA [Prevotella buccae D17] gi|315250852|gb|EFU30845.1| ribosome-associated GTPase EngA [Prevotella buccae ATCC 33574] Length = 437 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 75/155 (48%), Gaps = 18/155 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 + I+G N GKS+LFN L + AIV+D GTTRD G + DT G + ++ Sbjct: 5 VAIVGRPNVGKSTLFNRLTQSRRAIVSDTAGTTRDRQYGKCQWNGREFSVVDTGGWVVKS 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISF---PKNIDFIFIGTKSDLY 332 DDI E ++ + E ADL+L L ++++ ++++ + I + K D Sbjct: 65 DDIFEDAIRRQVLVATEEADLVLFLVDVSTGVTDWDEDVAMILRRTKLPVILVANKVDNS 124 Query: 333 STYTEEYD---------HLISSFTGEGLEELINKI 358 S Y E + H IS+ TG G +L++ I Sbjct: 125 SEYYEAAEFYKLGLGDPHCISAATGGGTGDLLDLI 159 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 47/173 (27%), Positives = 86/173 (49%), Gaps = 9/173 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G N GKSS+ NA +D IVT+I GTTRD + D G+ + DTAGIR Sbjct: 177 RFAVVGRPNVGKSSIINAFIGEDRNIVTEIAGTTRDSIYTRYDKFGFDFYLVDTAGIRRK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTE 337 + + +E + R+ +EN+D+ +L+ I++ + I F I + Sbjct: 237 NKVSEDLEFYSVMRSIRAIENSDVCILM--IDATRGIETQDMNIFQLIQKNNKSLVVVVN 294 Query: 338 EYDHLISSFTGEGLEELINKIKSILSNKFKKLP--FSIPSHKRHLYHLSQTVR 388 ++D L+ T + ++ N I++ ++ F P FS K+ ++ + +T + Sbjct: 295 KWD-LVEDKTQKVIDTFENAIRARMA-PFVDFPIIFSSAVTKQRIFKVLETAK 345 >gi|210633108|ref|ZP_03297675.1| hypothetical protein COLSTE_01584 [Collinsella stercoris DSM 13279] gi|210159262|gb|EEA90233.1| hypothetical protein COLSTE_01584 [Collinsella stercoris DSM 13279] Length = 444 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 54/88 (61%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G NAGKSSLFN + D +IV++I GTTRD + ++ +G ++ DTAGIR+ Sbjct: 180 RVAIIGRPNAGKSSLFNKMIGNDRSIVSNIAGTTRDAIDTVVERDGKRYRMVDTAGIRKK 239 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E + R ++ AD+ LL+ Sbjct: 240 STVYENIEYYSMVRGLRAIDRADVALLV 267 Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 2/64 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--E 279 + I+G N GKS+L N +A+ AIV G TRD D G + DT GI + Sbjct: 6 VAIVGRPNVGKSTLVNRIAQTSDAIVHQSRGVTRDRSYHVADWNGREFTLVDTGGIEPMK 65 Query: 280 TDDI 283 +DD+ Sbjct: 66 SDDV 69 >gi|122700861|emb|CAL88019.1| GTPase [Helicobacter pylori] Length = 170 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L GY V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122700859|emb|CAL88018.1| GTPase [Helicobacter pylori] Length = 170 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L GY V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|37525336|ref|NP_928680.1| GTP-binding protein EngA [Photorhabdus luminescens subsp. laumondii TTO1] gi|41017002|sp|Q7N702|DER_PHOLL RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|36784763|emb|CAE13673.1| GTP-binding protein EngA [Photorhabdus luminescens subsp. laumondii TTO1] Length = 493 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/98 (36%), Positives = 63/98 (64%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G + DTAG+R+ Sbjct: 208 KLAIVGKPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYILIDTAGVRKR 267 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 I VEK + +T +E+A+++LL+ I++++ IS Sbjct: 268 GKITETVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 303 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/84 (39%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG I DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGQEFIIIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 D VE ++ L +E AD++L + Sbjct: 65 DGVETHMAAQSLLAIEEADIVLFM 88 >gi|224372205|ref|YP_002606577.1| GTP-binding protein EngA [Nautilia profundicola AmH] gi|254783161|sp|B9L7G9|DER_NAUPA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|223589108|gb|ACM92844.1| ribosome-associated GTPase EngA [Nautilia profundicola AmH] Length = 461 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 59/174 (33%), Positives = 90/174 (51%), Gaps = 26/174 (14%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV----LTIDLDLEGYLVKISDTAG 276 K+ ILG N GKSSLFN + ++ AIV++ GTTRD+ +++D DLE + + DT G Sbjct: 3 KVAILGKPNVGKSSLFNRILRERDAIVSEKAGTTRDIKKREVSLDDDLEE--IVLLDTGG 60 Query: 277 IRETDDIVEKEGIKRTFLEV-ENADLILLL---KEINSKKEISFPKNID-----FIFIGT 327 + E D++ K +K LEV + ADL+L + K I ++EI + +N+ I + Sbjct: 61 LEERDELFNK--VKEKALEVAKEADLVLYMVDGKTIPDEEEIKYFRNLQKLGKHIILVVN 118 Query: 328 KSD-------LYSTYTEEYDHL--ISSFTGEGLEELINKIKSILSNKFKKLPFS 372 K D +Y Y D + IS G+ +LI +IK + K K S Sbjct: 119 KIDNDKMMEKVYDFYELGADEIFPISVSHNRGVGKLIERIKKFVPKKPKTFEVS 172 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 36/87 (41%), Positives = 54/87 (62%), Gaps = 2/87 (2%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKSSL NAL ++ AIV+D+ GTT D + ++ +G+ + DTAGIR Sbjct: 200 KVAIVGRVNVGKSSLLNALVGEERAIVSDVDGTTIDPIDENIYHDGWNITFVDTAGIRRR 259 Query: 281 DDI--VEKEGIKRTFLEVENADLILLL 305 I +EK + RT +E AD+ +L+ Sbjct: 260 SKIKDIEKYALLRTEKVLEEADIAILV 286 >gi|154175320|ref|YP_001407734.1| GTP-binding protein EngA [Campylobacter curvus 525.92] gi|166224320|sp|A7GWZ2|DER_CAMC5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|112803598|gb|EAU00942.1| putative GTPase [Campylobacter curvus 525.92] Length = 461 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 32/85 (37%), Positives = 55/85 (64%), Gaps = 1/85 (1%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI+++G N GKSSLFN LA++ +AI ++I GTTRD +++EG + D+ G+ E+ Sbjct: 3 KIILVGKPNVGKSSLFNRLARQRIAITSEISGTTRDTNKAKIEVEGKDCLLIDSGGLDES 62 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 ++ + K T E +N+D+I+ + Sbjct: 63 SELFKNVKFK-TLAEAKNSDIIIYM 86 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 56/158 (35%), Positives = 83/158 (52%), Gaps = 18/158 (11%) Query: 153 ELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKL 212 E+S + ID+L+ +I L E+DV E +D L ND +G+L Sbjct: 140 EISVSHNTGIDELSQ---WIAGQL----EDDVIKTDESEDFDDFLENFND------EGEL 186 Query: 213 --GEIIRNGY-KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269 E + Y ++ I+G N GKSSL NAL K A+V+DI GTT D + + EG + Sbjct: 187 ESSENFEDRYIRVGIVGRVNVGKSSLLNALVKDARAVVSDIAGTTIDPVNEIYEHEGRIF 246 Query: 270 KISDTAGIRETDDI--VEKEGIKRTFLEVENADLILLL 305 + DTAGIR+ I +E+ + RT +EN+D+ LL+ Sbjct: 247 EFVDTAGIRKRGKIEGIERYALNRTEKILENSDIALLV 284 >gi|149277444|ref|ZP_01883585.1| GTP-binding protein EngA [Pedobacter sp. BAL39] gi|149231677|gb|EDM37055.1| GTP-binding protein EngA [Pedobacter sp. BAL39] Length = 433 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 37/88 (42%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI I+G N GKSSL NAL K+ IVT I GTTRD + I + G+ DTAG+R+ Sbjct: 175 KITIVGRPNVGKSSLINALIGKERNIVTPIAGTTRDSIHIHYNQFGHEFMFIDTAGLRKK 234 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E + RT +E AD+++L+ Sbjct: 235 TKVKENIEFYSVMRTIKALEEADVVVLM 262 Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 1/88 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 I I+G N GKS+LFN L + AIV D G TRD + + DT G + + Sbjct: 5 IAIVGRPNVGKSTLFNRLTESRKAIVDDFSGVTRDRHYGSAEWTDKQFTVIDTGGYVANS 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308 +D+ E ++ + +E A ++L + ++ Sbjct: 65 EDVFEAAIREQVVIAIEEATVLLFMVDV 92 >gi|119494580|ref|ZP_01624713.1| GTP-binding protein EngA [Lyngbya sp. PCC 8106] gi|119452086|gb|EAW33297.1| GTP-binding protein EngA [Lyngbya sp. PCC 8106] Length = 453 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSL NA ++ AIV+ I GTTRD + ++ G ++ DTAGIR Sbjct: 178 RVAIVGRPNVGKSSLLNAFLGENRAIVSPISGTTRDAIDTVVERNGKTYRLVDTAGIRRK 237 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 ++ E GI R F + ++++LL+ Sbjct: 238 KNVEYGAEFFGINRAFKAIRRSNIVLLI 265 Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust. Identities = 17/35 (48%), Positives = 23/35 (65%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 + I+G N GKS+L N L++ +IV D PG TRD Sbjct: 6 VAIVGRPNVGKSTLVNRLSETQDSIVHDQPGITRD 40 >gi|71908594|ref|YP_286181.1| GTP-binding protein EngA [Dechloromonas aromatica RCB] gi|123760409|sp|Q47BS0|DER_DECAR RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|71848215|gb|AAZ47711.1| Small GTP-binding protein protein domain:GTP-binding protein [Dechloromonas aromatica RCB] Length = 443 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 79/155 (50%), Gaps = 13/155 (8%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKS+L N L ++ I D PGTTRD + ID + G + DTAG+R+ Sbjct: 177 RVAIVGRPNVGKSTLINTLLGEERVIAFDAPGTTRDSIEIDFERGGRKYVLVDTAGMRKR 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTE 337 + +EK + +T +E+A++++L+ + + DFI ++ + + Sbjct: 237 GKVFESIEKFSVVKTLQSIEDANVVILMVDAQADVSDQDAHIADFILQSGRALVVA--VN 294 Query: 338 EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372 ++D L ++T E + + IL K K L F+ Sbjct: 295 KWDGL-DAYTRE-------QTRQILQRKLKFLDFA 321 Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 69/159 (43%), Gaps = 32/159 (20%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 +V++G N GKS+LFN L K AIV D+PG TRD L + DT G Sbjct: 5 LVLVGRPNVGKSTLFNRLTKSRDAIVADMPGLTRDRHYGHGKLGKKPYLVVDTGGF---- 60 Query: 282 DIVEKEGI-----KRTFLEVENADLILLL-----------KEINSK-KEISFPKNIDFIF 324 + + KEGI ++T + AD I+ + KEI +K + I P F+ Sbjct: 61 EPLVKEGILHEMARQTEQAIAEADAIIFVVDGRSGLTPHDKEIANKLRRIDRPV---FVA 117 Query: 325 IGTKSDLYSTYTEEYDH--------LISSFTGEGLEELI 355 + + S E H IS+ GEG+ L+ Sbjct: 118 VNKAEGMNSGMVEAEFHELGLGEPNAISAAHGEGIRGLV 156 >gi|288801362|ref|ZP_06406816.1| ribosome-associated GTPase EngA [Prevotella sp. oral taxon 299 str. F0039] gi|288331745|gb|EFC70229.1| ribosome-associated GTPase EngA [Prevotella sp. oral taxon 299 str. F0039] Length = 437 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G NAGKSS+ NA +D IVT+I GTTRD + D G+ + DTAGIR Sbjct: 177 RFAVVGRPNAGKSSIINAFMGEDRNIVTEIAGTTRDSIYTRFDKFGFDFYLVDTAGIRRK 236 Query: 281 DDIVEK---EGIKRTFLEVENADLILLL 305 + + E + R+ +EN+D+ +L+ Sbjct: 237 NKVTEDLEFYSVMRSIRAIENSDVCILM 264 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 76/164 (46%), Gaps = 28/164 (17%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 + I+G N GKS+LFN L K AIV+D GTTRD +D G I DT G + + Sbjct: 5 VAIVGRPNVGKSTLFNRLTKTRSAIVSDTAGTTRDRQYGKVDWNGREFSIVDTGGWVVNS 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332 +DI E ++ + E A+L+L + ++ + +I + I + K D Sbjct: 65 EDIFEDAIRRQVLIATEEANLVLFVVDVQTGLTDWDEDVAQILRKSKVPIILVVNKVD-- 122 Query: 333 STYTEEYD------------HLISSFTGEG----LEELINKIKS 360 ++YD ISS TG G L+E+IN +K+ Sbjct: 123 -KNEQQYDAAEFYSLGLGEPFCISSSTGSGTGDLLDEVINNLKA 165 >gi|122700821|emb|CAL87999.1| GTPase [Helicobacter pylori] Length = 170 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L GY V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|289806068|ref|ZP_06536697.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 188 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 50/174 (28%), Positives = 86/174 (49%), Gaps = 21/174 (12%) Query: 262 LDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS------ 315 + ++G + I DTAG+R+ +D VE+ GI+R + E+E AD +L + + + + Sbjct: 11 IHIDGMPLHIIDTAGLRDANDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPADIWP 70 Query: 316 -----FPKNIDFIFIGTKSDLYSTY---TEEYDH---LISSFTGEGLEELINKIKSILSN 364 PKN+ + K+D+ +E H +S+ TGEG++ L N +K + Sbjct: 71 DFIARLPKNLPITVVRNKADITGETLGISEVNGHSLVRLSARTGEGVDVLRNHLKQSMGF 130 Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSL 416 + + +RHL L++ +LE A L G +++AE LRLA SL Sbjct: 131 D-TNMEGGFLARRRHLQALAEAANHLEQGKAQLLGAWAG-ELLAEELRLAQQSL 182 >gi|242255946|gb|ACS88957.1| GTPase [Helicobacter pylori] Length = 170 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/82 (43%), Positives = 51/82 (62%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG SN GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQSNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|238758839|ref|ZP_04620012.1| GTP-binding protein engA [Yersinia aldovae ATCC 35236] gi|238702947|gb|EEP95491.1| GTP-binding protein engA [Yersinia aldovae ATCC 35236] Length = 494 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 76/155 (49%), Gaps = 19/155 (12%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L A+V D PG TRD ++EG+ + DT GI T+ Sbjct: 5 IALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGHEFIVIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL---------------KEINSKKEISF--PKNIDFIF 324 D VE + ++ L +E AD++L + + + S+++ +F D I Sbjct: 65 DGVETKMAGQSLLAIEEADIVLFMVDARAGLMPADQGIAQHLRSREKATFLVANKTDGID 124 Query: 325 IGTKS-DLYSTYTEEYDHLISSFTGEGLEELINKI 358 T + D YS + H I++ G G+ +LI + Sbjct: 125 PDTATADFYSLGLGDV-HAIAASHGRGVTQLIEDV 158 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 60/98 (61%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + +D +V D+PGTTRD + I + + + DTAG+R+ Sbjct: 208 KLAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMTRDEREYILIDTAGVRKR 267 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 I VEK + +T +E+++++LL+ I+++ IS Sbjct: 268 GKITETVEKFSVIKTLQAIEDSNVVLLV--IDARDGIS 303 >gi|187778884|ref|ZP_02995357.1| hypothetical protein CLOSPO_02479 [Clostridium sporogenes ATCC 15579] gi|187772509|gb|EDU36311.1| hypothetical protein CLOSPO_02479 [Clostridium sporogenes ATCC 15579] Length = 439 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 33/85 (38%), Positives = 52/85 (61%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFN LA K +AIV D PG TRD + + + Y + DT GI E+ Sbjct: 6 VAIVGRPNVGKSTLFNKLAGKRIAIVQDTPGVTRDRIYAEAEWLNYKFTMIDTGGIEPES 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 +DI+ + ++ + +E A++I+ L Sbjct: 66 EDIIISQMRRQAQIAIEMANVIIFL 90 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 3/87 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I +G N GKSSL N L ++ IV++IPGTTRD + ++ + + DTAG+R Sbjct: 179 IAFVGKPNVGKSSLINKLLGEERLIVSNIPGTTRDSIDSYVNTDFGEFTLIDTAGLRRKS 238 Query: 282 DI---VEKEGIKRTFLEVENADLILLL 305 + +E+ + RT+ +E AD+ +L+ Sbjct: 239 KVKEEIERYSVIRTYASIERADVCILM 265 >gi|307132056|ref|YP_003884072.1| 50S ribosome associated factor involved in the biogenesis and stability of 50S ribosomal subunits [Dickeya dadantii 3937] gi|306529585|gb|ADM99515.1| 50S ribosome associated factor involved in the biogenesis and stability of 50S ribosomal subunits [Dickeya dadantii 3937] Length = 495 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/98 (36%), Positives = 63/98 (64%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G + DTAG+R+ Sbjct: 209 KLAIVGRPNVGKSTLTNRILGEERVVVFDMPGTTRDSIYIPMERDGRDYVLIDTAGVRKR 268 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D VEK + +T +E+A+++LL+ I++++ IS Sbjct: 269 GKITDAVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 304 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/155 (30%), Positives = 72/155 (46%), Gaps = 19/155 (12%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG I DT GI + Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGNEFIIIDTGGIDGNE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLLKE-----------------INSKKEISFPKNIDFIF 324 D VE +++ L +E AD++L L + + K +D I Sbjct: 65 DGVETRMAEQSLLAIEEADIVLFLVDARDGLMPADHAIAQHLRMREKDTFLVANKVDGID 124 Query: 325 IGTK-SDLYSTYTEEYDHLISSFTGEGLEELINKI 358 I T +D YS E H I++ G G+ L+ K+ Sbjct: 125 IDTGIADFYSLGLGEV-HPIAASHGRGVTSLLEKV 158 >gi|313904194|ref|ZP_07837573.1| ribosome-associated GTPase EngA [Eubacterium cellulosolvens 6] gi|313470996|gb|EFR66319.1| ribosome-associated GTPase EngA [Eubacterium cellulosolvens 6] Length = 443 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 55/88 (62%), Gaps = 1/88 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFNALA + ++IV D PG TRD + D+ + + DT GI ++ Sbjct: 6 VAIVGRPNVGKSTLFNALAGERISIVKDTPGVTRDRIYADVTWLNHEFTMIDTGGIEPDS 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308 DI+ K+ ++ + +E AD+I+ + ++ Sbjct: 66 SDIILKQMREQAVIAMETADVIIFITDV 93 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 47/88 (53%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI I+G N GKSS+ N L + IV+DI GTTRD + + G DTAG+R Sbjct: 179 KIAIVGKPNVGKSSIINKLLGTNRVIVSDIAGTTRDAIDTVIKRNGKDYTFIDTAGLRRK 238 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 I +E+ I RT VE D+ +++ Sbjct: 239 SKIKEELERYSIVRTVAAVERCDIAVVV 266 >gi|294102070|ref|YP_003553928.1| ribosome-associated GTPase EngA [Aminobacterium colombiense DSM 12261] gi|293617050|gb|ADE57204.1| ribosome-associated GTPase EngA [Aminobacterium colombiense DSM 12261] Length = 436 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 56/213 (26%), Positives = 91/213 (42%), Gaps = 47/213 (22%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSL NALA D +V+DIPGTTRD ++++ + DTAG+R+ Sbjct: 176 RVSIVGRPNVGKSSLVNALAGSDRVLVSDIPGTTRDATDTVIEMKEGKFRFIDTAGLRKK 235 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKE-----INSKKEIS---FPKNIDFIFIGTKS 329 I +E RT V+ +D+ LL+ + + K+++ K I + K Sbjct: 236 SRIDSDIEYYSFVRTLQAVDRSDVALLVMDASEPTTDQDKKMAAQVIEKGKGLILLINKW 295 Query: 330 DLYSTYTEEYDHL------------------ISSFTGEGLEELINKIKSILSNK------ 365 D + D + +S+ T GL +L IK++ N+ Sbjct: 296 DTLEAADKLGDEMRKRVRDEMPFLSHAPLLFVSALTKRGLNKLTQTIKNVQENRSRRIGT 355 Query: 366 ------------FKKLPFSIPSHKRHLYHLSQT 386 F+ LP S +Y+ +QT Sbjct: 356 TELNRLIRDVLAFQTLPTSRKGRVLKIYYCTQT 388 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/85 (40%), Positives = 49/85 (57%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKSSLFN + + AIV D+PG TRD + + + +G I DT G+ D Sbjct: 4 IAIVGRPNVGKSSLFNRILGRREAIVDDMPGVTRDRIYGETEWKGRQFYIVDTGGLLVRD 63 Query: 282 DIVEKEGI-KRTFLEVENADLILLL 305 + EGI K+ L +E + +IL + Sbjct: 64 EHPLVEGIRKQATLAIEESHVILFV 88 >gi|122700853|emb|CAL88015.1| GTPase [Helicobacter pylori] Length = 170 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L GY V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|293115597|ref|ZP_05792245.2| ribosome-associated GTPase EngA [Butyrivibrio crossotus DSM 2876] gi|292809015|gb|EFF68220.1| ribosome-associated GTPase EngA [Butyrivibrio crossotus DSM 2876] Length = 446 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I I+G N GKSS+ N + + IV+DI GTTRD + D+ G DTAG+R Sbjct: 184 RIAIVGKPNVGKSSIINKIVGESRVIVSDIAGTTRDAIDTDITYNGNEYVFIDTAGLRRK 243 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + I +E+ I RT VE AD++L++ Sbjct: 244 NKIKEELERYSIIRTVTAVERADVVLVV 271 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 54/88 (61%), Gaps = 1/88 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFNALA + ++IV D PG TRD + D+ Y + DT GI E+ Sbjct: 11 VAIVGRPNVGKSTLFNALAGEQISIVKDTPGVTRDRIYADVTWLNYNFTLIDTGGIEPES 70 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308 DI+ + ++ + + +AD+I+ + ++ Sbjct: 71 KDIILSQMREQAEIAIASADVIIFMVDV 98 >gi|193216656|ref|YP_001999898.1| GTP-binding protein EngA [Mycoplasma arthritidis 158L3-1] gi|193001979|gb|ACF07194.1| GTPase protein EngA [Mycoplasma arthritidis 158L3-1] Length = 434 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/105 (36%), Positives = 65/105 (61%), Gaps = 6/105 (5%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 +K+ +LG +N GKS+L N L+ ++ +IV+DI GTTRD ++ + + G ++ DTAGI+ Sbjct: 172 FKLALLGKTNVGKSTLLNTLSNEERSIVSDIAGTTRDAISSFIKINGEEFEVVDTAGIKR 231 Query: 280 TD---DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS-FPKNI 320 D +E + R +E A+L LL+ +++ E+S F +NI Sbjct: 232 KSKLIDSIEHYSLIRAHAAIEEANLCLLV--LDATDEVSHFHQNI 274 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 2/85 (2%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+ FN L K AIV D PG TRD + + G + DT GI E Sbjct: 5 VAIIGKPNVGKSTFFNKLINKRKAIVYDRPGVTRDRIYDVVSWAGSTFTLIDTGGITIEN 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 DD E+ I+ + ++ A +I+ L Sbjct: 65 DDFKEQIKIQAQ-VAIDEASVIVFL 88 >gi|116328637|ref|YP_798357.1| GTP-binding protein EngA [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116330706|ref|YP_800424.1| GTP-binding protein EngA [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|122281540|sp|Q04TV4|DER_LEPBJ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|122283577|sp|Q04ZS1|DER_LEPBL RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|116121381|gb|ABJ79424.1| GTPase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124395|gb|ABJ75666.1| GTPase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 487 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 57/89 (64%), Gaps = 3/89 (3%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR- 278 +++ I+G N+GKSSL NA+ + A+V+D+ GTTRD + L+ + ++DTAGIR Sbjct: 225 FRLAIVGKPNSGKSSLLNAVCGYERAVVSDVAGTTRDSVDTLLEFGNRKLLLTDTAGIRK 284 Query: 279 --ETDDIVEKEGIKRTFLEVENADLILLL 305 +T + +E +RT +E++DL++ L Sbjct: 285 HSKTAEALEYYSYQRTLKAIESSDLVIHL 313 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 35/94 (37%), Positives = 55/94 (58%), Gaps = 9/94 (9%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-----DLEGYLVKISDTAG 276 + I+G N GKS+LFN+L KK +AI D PG TRDVL+ + DL+ YL DT G Sbjct: 30 VSIVGRQNVGKSTLFNSLLKKKLAITEDYPGVTRDVLSARVYQEEKDLDFYLC---DTPG 86 Query: 277 IR-ETDDIVEKEGIKRTFLEVENADLILLLKEIN 309 + E D + + ++ + ++ +D+I+ L + N Sbjct: 87 LDIENPDSLSQSILEAAYRQLNESDVIIFLLDKN 120 >gi|319779671|ref|YP_004130584.1| GTP-binding protein EngA [Taylorella equigenitalis MCE9] gi|317109695|gb|ADU92441.1| GTP-binding protein EngA [Taylorella equigenitalis MCE9] Length = 452 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/179 (26%), Positives = 82/179 (45%), Gaps = 31/179 (17%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N+L + I D+PGTTRD + ID + K+ DTAG+R+ Sbjct: 188 KLAIVGRPNVGKSTLINSLIGEQRVIAFDLPGTTRDAIEIDFEHNNKKYKLIDTAGLRKR 247 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFI------------ 325 + +EK + +T +E ++++L+ ++++ EIS FI Sbjct: 248 GRVFESIEKFSVIKTLQAIEACNVVVLV--LDAQSEISEQDAHIAGFILESGRALVVAIN 305 Query: 326 ---GTKSDLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLP 370 G D E++ H IS+ +G++ L+ + F+KLP Sbjct: 306 KWDGLDEDKRDWVIREFERKLRFLSFAKVHFISALKSQGIKSLLKSVNLAHEAAFRKLP 364 Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 1/90 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 I ++G N GKS+LFN L + AIV D G TRD + + + DT G + Sbjct: 7 IALVGRPNVGKSTLFNRLTRSRNAIVADYSGLTRDRHYGEGRIGDRPFLVIDTGGFEPKV 66 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310 + KE ++T L + +D+++ L + S Sbjct: 67 KTGILKEMARQTELAISESDVVIFLVDARS 96 >gi|119471071|ref|ZP_01613630.1| GTP-binding protein EngA [Alteromonadales bacterium TW-7] gi|119445911|gb|EAW27192.1| GTP-binding protein EngA [Alteromonadales bacterium TW-7] Length = 488 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 33/84 (39%), Positives = 49/84 (58%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L + A+V D PG TRD + +GY + DT GI T+ Sbjct: 5 IALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQANYDGYEFIVVDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + +E E ++ L +E AD++L L Sbjct: 65 EGIEIEMADQSLLAIEEADIVLFL 88 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/98 (34%), Positives = 59/98 (60%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 K+ I+G N GKS+L N + ++ IV D+PGTTRD + I + + DTAG+R Sbjct: 203 KLAIIGRPNVGKSTLTNRILGEERVIVYDMPGTTRDSIYIPMTRNEKEYVLIDTAGVRKR 262 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + D+VEK + +T +E+ +++LL+ ++++ IS Sbjct: 263 KKVSDVVEKFSVIKTLQAIEDCNVVLLV--VDARDGIS 298 >gi|301312102|ref|ZP_07218024.1| ribosome-associated GTPase EngA [Bacteroides sp. 20_3] gi|300830204|gb|EFK60852.1| ribosome-associated GTPase EngA [Bacteroides sp. 20_3] Length = 437 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/88 (40%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I I+G NAGKSSL NA +D IVTDI GTTRD + + G + DTAGIR+ Sbjct: 177 RIAIIGRPNAGKSSLINAFIGEDRHIVTDIAGTTRDSIYTKYNKFGLNFYLVDTAGIRKK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E + R+ +EN+D+ +L+ Sbjct: 237 GKVNEDLEYYSVIRSIRAIENSDVCVLM 264 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 1/91 (1%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277 G + I+G N GKS+LFN L AIV + GTTRD ++ G + DT G + Sbjct: 2 GNIVAIVGRPNVGKSTLFNRLTGTRQAIVNEEAGTTRDRQYGKVEWTGKEFSLIDTGGWV 61 Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEI 308 ++D+ E+E K+ + +E AD+IL + ++ Sbjct: 62 VNSEDVFEEEINKQVKVAIEEADVILFVVDV 92 >gi|300817719|ref|ZP_07097934.1| ribosome-associated GTPase EngA [Escherichia coli MS 107-1] gi|300529707|gb|EFK50769.1| ribosome-associated GTPase EngA [Escherichia coli MS 107-1] Length = 499 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 56/88 (63%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G + DTAG+R+ Sbjct: 213 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 272 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLL 305 D VEK + +T +E+A++++L+ Sbjct: 273 GKITDAVEKFSVIKTLQAIEDANVVMLV 300 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG DT GI T+ Sbjct: 14 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 73 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 D VE +++ L +E AD++L + Sbjct: 74 DGVETRMAEQSLLAIEEADVVLFM 97 >gi|283786127|ref|YP_003365992.1| GTP-binding protein [Citrobacter rodentium ICC168] gi|282949581|emb|CBG89199.1| GTP-binding protein [Citrobacter rodentium ICC168] Length = 490 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/98 (36%), Positives = 62/98 (63%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + +D +V D+PGTTRD + I ++ + + DTAG+R+ Sbjct: 204 KLAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRKR 263 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D VEK + +T +E+A+++LL+ I++++ IS Sbjct: 264 GKITDAVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 299 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE +++ L +E AD++L + Sbjct: 65 EGVETRMAEQSLLAIEEADVVLFM 88 >gi|219124383|ref|XP_002182484.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217405830|gb|EEC45771.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 489 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 34/97 (35%), Positives = 56/97 (57%), Gaps = 5/97 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ ILG N GKS+L NAL K+D IV PG TRD + ++ + V+I DTAGIR+ Sbjct: 230 QLAILGRQNVGKSTLVNALLKQDRVIVGATPGLTRDAIAVEWTWKNRPVQIVDTAGIRKR 289 Query: 281 -----DDIVEKEGIKRTFLEVENADLILLLKEINSKK 312 +D +E ++ ++ AD+ +L+ + ++K Sbjct: 290 SQRNHEDAIEDLSVEDALRAMKVADVAVLVLDAEARK 326 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 37/61 (60%), Gaps = 5/61 (8%) Query: 222 IVILGHSNAGKSSLFNALAKK-----DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 + ILG NAGKS+LFN L K AIV+++PGTTRD + G L ++ DTAG Sbjct: 5 VSILGPPNAGKSTLFNRLLDKAANRAGTAIVSNVPGTTRDRRECVGRIGGTLFRLVDTAG 64 Query: 277 I 277 + Sbjct: 65 V 65 >gi|228473598|ref|ZP_04058350.1| ribosome-associated GTPase EngA [Capnocytophaga gingivalis ATCC 33624] gi|228274970|gb|EEK13780.1| ribosome-associated GTPase EngA [Capnocytophaga gingivalis ATCC 33624] Length = 434 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G NAGKSS NAL +D IVTDI GTTRD + + G+ + DTAGIR Sbjct: 176 RFAVVGRPNAGKSSFINALIGEDRYIVTDIAGTTRDAIDTRYNRFGFEFNLVDTAGIRRK 235 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E + R+ +E++D+ LLL Sbjct: 236 AKVKEDLEFYSVMRSVRAIEHSDVCLLL 263 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/90 (38%), Positives = 48/90 (53%), Gaps = 1/90 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 + I+G N GKS+ FN L ++ AIV I G TRD D G + DT G + Sbjct: 5 VAIVGRPNVGKSTFFNRLVQRREAIVDSISGVTRDRHYGKTDWNGRDFSVIDTGGYVAGG 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310 DDI +KE K+ L +E AD I+ L ++ S Sbjct: 65 DDIFQKEIDKQVNLAIEEADAIIFLTDVES 94 >gi|311745511|ref|ZP_07719296.1| ribosome-associated GTPase EngA [Algoriphagus sp. PR1] gi|126578066|gb|EAZ82286.1| ribosome-associated GTPase EngA [Algoriphagus sp. PR1] Length = 437 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/113 (37%), Positives = 65/113 (57%), Gaps = 6/113 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI ILG N GKSS NAL K+ +IVT+ GTTRD + L G I+DTAGIR+ Sbjct: 179 KISILGRPNVGKSSFLNALLGKERSIVTNEAGTTRDAIHTRYKLYGQDFIITDTAGIRKK 238 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSD 330 + VE + R+ +E +D+I+++ + + E ++I+ I +G K++ Sbjct: 239 AKVKEDVEFYSVMRSLRTLEESDVIIVMVDASRGLE---SQDINLISLGIKNN 288 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 + I+G N GKS+LFN L ++ AI ++ G TRD G + DT G + + Sbjct: 5 VAIVGRPNVGKSTLFNRLVEERKAIEDNMSGVTRDRHYGHAQWTGKFFSVIDTGGYVTGS 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 DD+ E E K+ L VE AD+IL + Sbjct: 65 DDVYEAEIRKQVKLAVEEADVILFV 89 >gi|296273309|ref|YP_003655940.1| ribosome-associated GTPase EngA [Arcobacter nitrofigilis DSM 7299] gi|296097483|gb|ADG93433.1| ribosome-associated GTPase EngA [Arcobacter nitrofigilis DSM 7299] Length = 480 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 34/85 (40%), Positives = 52/85 (61%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI ++G N GKSSLFN +AK+ +AIV+D GTTRDV ++++ + DT GI ET Sbjct: 12 KIALVGQPNVGKSSLFNRIAKQRIAIVSDQAGTTRDVRKHEVEIFDKKALMLDTGGIDET 71 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 +D + ++ + AD+IL + Sbjct: 72 NDAIFSTVKRKAVETAKEADIILFM 96 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/96 (34%), Positives = 55/96 (57%), Gaps = 2/96 (2%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 N K+ I+G N GKSS+ NAL ++ ++V+ I GTT D + + + + DTAG+ Sbjct: 213 NNIKVAIIGRVNVGKSSILNALIGQERSVVSPIAGTTIDPVDESFEYKDKNITFVDTAGL 272 Query: 278 RETDDI--VEKEGIKRTFLEVENADLILLLKEINSK 311 R I +EK + RT +E A+L L++ + +S+ Sbjct: 273 RRRGSIEGIEKFALMRTKEMLEKANLALVVLDASSE 308 >gi|283850821|ref|ZP_06368107.1| small GTP-binding protein [Desulfovibrio sp. FW1012B] gi|283573744|gb|EFC21718.1| small GTP-binding protein [Desulfovibrio sp. FW1012B] Length = 444 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/102 (35%), Positives = 58/102 (56%), Gaps = 5/102 (4%) Query: 193 LNDILFLKNDISSHISQGK---LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249 +ND+ ++ +S+ K E + G ++ +LG NAGKSSL NAL +D IV++ Sbjct: 152 VNDLAGALAELLPEVSENKDEPRAEPVEAGIRLAVLGRPNAGKSSLVNALLGEDRMIVSE 211 Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR 291 +PGTTRD + + + G DTAG+R+ I +G++R Sbjct: 212 VPGTTRDAVDVAVIRNGRRYVFVDTAGVRKRTRIT--DGVER 251 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 9/89 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN LAK+ AI D PG TRD L ++L+ +V + DT G+ Sbjct: 5 VAIVGRPNVGKSTLFNRLAKRPKAITHDRPGVTRDRLEATVELDDRIVTLIDTGGM---- 60 Query: 282 DIVEKEGIKRTF-----LEVENADLILLL 305 D EG++R + + AD++L L Sbjct: 61 DFDAPEGLERQIVVQAEIALNMADVVLFL 89 >gi|242255828|gb|ACS88898.1| GTPase [Helicobacter pylori] Length = 170 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/89 (40%), Positives = 54/89 (60%), Gaps = 1/89 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310 ++ KE + +DLIL + ++ S Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYVVDVKS 97 >gi|298207544|ref|YP_003715723.1| GTP-binding protein EngA [Croceibacter atlanticus HTCC2559] gi|83850180|gb|EAP88048.1| GTP-binding protein EngA [Croceibacter atlanticus HTCC2559] Length = 434 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G NAGKSS NAL +D IVTDI GTTRD + + G+ + DTAGIR Sbjct: 176 RFAVVGRPNAGKSSFINALIGEDRYIVTDIAGTTRDSIDTKYNRFGFEFNLVDTAGIRRK 235 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E + R+ +E+AD+ LL+ Sbjct: 236 TKVKEDLEFYSVMRSVRAIEHADVCLLV 263 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 79/172 (45%), Gaps = 20/172 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 + I+G N GKS+ FN + ++ AI I G TRD D G + DT G + + Sbjct: 5 VAIVGRPNVGKSTFFNRMIQRREAITDAISGVTRDRHYGKADWNGKEFTLIDTGGYVVGS 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD-- 330 DDI E+E K+ L ++ AD+IL + ++ S ++ N + + K D Sbjct: 65 DDIFEQEIDKQVELAIDEADVILFMVDVTSGITGMDEDVAKLLRRSNKPMMLVVNKVDNA 124 Query: 331 --------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374 Y+ EY H I S G G +L++++ IL K ++ S+P Sbjct: 125 ERHADAVEFYNLGLGEY-HAIGSMNGAGTGDLLDELVKILPEKEEREEDSLP 175 >gi|298291071|ref|YP_003693010.1| ribosome-associated GTPase EngA [Starkeya novella DSM 506] gi|296927582|gb|ADH88391.1| ribosome-associated GTPase EngA [Starkeya novella DSM 506] Length = 449 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 77/167 (46%), Gaps = 29/167 (17%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ +LG NAGKS+L NAL +D + G TRD + +D++ G +++ DTAG+R+ Sbjct: 183 RVAVLGRPNAGKSTLINALLGEDRLLTGPEAGITRDSIAVDIERHGVALRVFDTAGMRKR 242 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF--------IFIGTKS 329 DD +EK + A+++++L + E + D + +K+ Sbjct: 243 ARIDDKLEKLSVADGLRAARFAEVVVVLMDATHPFEEQDLRIADLAEREGRAVVLALSKA 302 Query: 330 DL-------YSTYTEEYDH-----------LISSFTGEGLEELINKI 358 DL EE DH L+S TGEGL+ L+ + Sbjct: 303 DLVKDQPGIVKRMREEADHWLPQLRGAPVVLVSGLTGEGLDRLVRAV 349 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 37/113 (32%), Positives = 62/113 (54%), Gaps = 4/113 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN L K +A+V D PG TRD D L ++ DTAG+ E Sbjct: 5 VAIVGRPNVGKSTLFNRLVGKRLALVDDRPGVTRDRREGDGRLGHLSFRVIDTAGLEEAK 64 Query: 282 -DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYS 333 + +E +T +++AD++L L I++K ++ P + F + +S ++ Sbjct: 65 AESLEGRMRAQTEAAIDDADVLLFL--IDAKAGVT-PSDRAFADLARRSGKHT 114 >gi|262383937|ref|ZP_06077073.1| ribosome-associated GTPase EngA [Bacteroides sp. 2_1_33B] gi|262294835|gb|EEY82767.1| ribosome-associated GTPase EngA [Bacteroides sp. 2_1_33B] Length = 437 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/88 (40%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I I+G NAGKSSL NA +D IVTDI GTTRD + + G + DTAGIR+ Sbjct: 177 RIAIIGRPNAGKSSLINAFIGEDRHIVTDIAGTTRDSIYTKYNKFGLNFYLVDTAGIRKK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E + R+ +EN+D+ +L+ Sbjct: 237 GKVNEDLEYYSVIRSIRAIENSDVCVLM 264 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 1/91 (1%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277 G + I+G N GKS+LFN L AIV + GTTRD ++ G + DT G + Sbjct: 2 GNIVAIVGRPNVGKSTLFNRLTGTRQAIVNEEAGTTRDRQYGKVEWTGKEFSLIDTGGWV 61 Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEI 308 ++D+ E+E K+ + +E AD+IL + ++ Sbjct: 62 VNSEDVFEEEINKQVKVAIEEADVILFVVDV 92 >gi|260588686|ref|ZP_05854599.1| ribosome-associated GTPase EngA [Blautia hansenii DSM 20583] gi|260541161|gb|EEX21730.1| ribosome-associated GTPase EngA [Blautia hansenii DSM 20583] Length = 441 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI ++G N GKSSL N + +D IV++I GTTRD + + +G DTAG+R Sbjct: 179 KIAVVGKPNVGKSSLINKILGEDRVIVSNIAGTTRDAIDTKVTYQGKEYTFIDTAGLRRK 238 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + I +E+ I RT VE AD+++++ Sbjct: 239 NKIKEELERYSIIRTVTAVERADVVVMM 266 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 54/88 (61%), Gaps = 1/88 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFNALA + ++IV D PG TRD + ++ + DT GI E+ Sbjct: 6 VAIVGRPNVGKSTLFNALAGEKISIVKDTPGVTRDRIYAEVTWLDKTFTMIDTGGIEPES 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308 +D++ + ++ + ++ AD+I+ + ++ Sbjct: 66 NDVILSQMREQAQIAIDTADVIIFMTDV 93 >gi|85716391|ref|ZP_01047363.1| GTP-binding protein EngA [Nitrobacter sp. Nb-311A] gi|85696748|gb|EAQ34634.1| GTP-binding protein EngA [Nitrobacter sp. Nb-311A] Length = 458 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 51/198 (25%), Positives = 91/198 (45%), Gaps = 31/198 (15%) Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261 D I G+ ++ R ++ I+G NAGKS++ N L +D + + GTTRD ++++ Sbjct: 171 DADDSIESGE--DVSRRPIRVAIVGRPNAGKSTVINYLLNEDRLLTSPEAGTTRDSISVE 228 Query: 262 LDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPK 318 LD G +I DTAG+R I +EK + T V A++++L+ + ++ E + Sbjct: 229 LDWHGRDFRIFDTAGLRRRSRIEEKLEKLSVADTLRAVRFAEVVVLMMDAQNRFEEQDLR 288 Query: 319 NIDFI--------FIGTKSDLY-------STYTEEYDHL-----------ISSFTGEGLE 352 D I K DL ++ + DH +S TGEG+ Sbjct: 289 IADLIEREGRALVIAVNKWDLMQGGSARIASLRNDADHWLPQVKGAPVVALSGLTGEGVG 348 Query: 353 ELINKIKSILSNKFKKLP 370 L+ I++ + +++P Sbjct: 349 GLMTAIQAAYAVWNRRVP 366 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 33/60 (55%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 + I I+G N GKS+LFN L + +A+V D PG TRD L + DTAG+ E Sbjct: 3 FTIAIIGRPNVGKSTLFNRLVGQRLALVDDEPGVTRDRREGQARLGDLDFTVIDTAGLDE 62 >gi|331081965|ref|ZP_08331093.1| GTP-binding protein engA [Lachnospiraceae bacterium 6_1_63FAA] gi|330405560|gb|EGG85090.1| GTP-binding protein engA [Lachnospiraceae bacterium 6_1_63FAA] Length = 441 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI ++G N GKSSL N + +D IV++I GTTRD + + +G DTAG+R Sbjct: 179 KIAVVGKPNVGKSSLINKILGEDRVIVSNIAGTTRDAIDTKVTYQGKEYTFIDTAGLRRK 238 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + I +E+ I RT VE AD+++++ Sbjct: 239 NKIKEELERYSIIRTVTAVERADVVVMM 266 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 54/88 (61%), Gaps = 1/88 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFNALA + ++IV D PG TRD + ++ + DT GI E+ Sbjct: 6 VAIVGRPNVGKSTLFNALAGEKISIVKDTPGVTRDRIYAEVTWLDKTFTMIDTGGIEPES 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308 +D++ + ++ + ++ AD+I+ + ++ Sbjct: 66 NDVILSQMREQAQIAIDTADVIIFMTDV 93 >gi|299530502|ref|ZP_07043922.1| GTP-binding protein EngA [Comamonas testosteroni S44] gi|298721478|gb|EFI62415.1| GTP-binding protein EngA [Comamonas testosteroni S44] Length = 446 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ + G NAGKS+L N ++ + D+PGTTRD +T+ + G ++ DTAG+R Sbjct: 182 RLAVAGRPNAGKSTLINTWLGEERLVAFDMPGTTRDAITVPFERNGQKFELIDTAGLRRK 241 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +EK + +T +E A+++LLL Sbjct: 242 GKVFEAIEKFSVVKTLQAIEGANVVLLL 269 Score = 40.4 bits (93), Expect = 0.56, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 I ++G N GKS+LFN L K AIV D G TRD + + DT G + Sbjct: 5 IALVGRPNVGKSTLFNRLTKSRDAIVADFAGLTRDRHYGQGRQGKHEYIVIDTGGFEPDA 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 + KE K+T V AD+++ + Sbjct: 65 SRGIFKEMAKQTQQAVAEADVVIFV 89 >gi|150009038|ref|YP_001303781.1| GTP-binding protein EngA [Parabacteroides distasonis ATCC 8503] gi|166225833|sp|A6LEP5|DER_PARD8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|149937462|gb|ABR44159.1| GTP-binding protein, Era/ThdF family [Parabacteroides distasonis ATCC 8503] Length = 437 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/88 (40%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I I+G NAGKSSL NA +D IVTDI GTTRD + + G + DTAGIR+ Sbjct: 177 RIAIIGRPNAGKSSLINAFIGEDRHIVTDIAGTTRDSIYTKYNKFGLNFYLVDTAGIRKK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E + R+ +EN+D+ +L+ Sbjct: 237 GKVNEDLEYYSVIRSIRTIENSDVCVLM 264 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 1/91 (1%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277 G + I+G N GKS+LFN L AIV + GTTRD ++ G + DT G + Sbjct: 2 GNIVAIVGRPNVGKSTLFNRLTGTRQAIVNEEAGTTRDRQYGKVEWTGKEFSLIDTGGWV 61 Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEI 308 ++D+ E+E K+ + +E AD+IL + ++ Sbjct: 62 VNSEDVFEEEINKQVKVAIEEADVILFVVDV 92 >gi|4467677|emb|CAB37790.1| GTP-binding protein homologue [Helicobacter pylori] Length = 170 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 40/96 (41%), Positives = 57/96 (59%), Gaps = 4/96 (4%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V+ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVEFLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEI 314 ++ KE F + +DLIL + K I S ++I Sbjct: 69 ALLSKEIKALNFKAAQMSDLILYVVDGKSIPSDEDI 104 >gi|134299023|ref|YP_001112519.1| GTP-binding protein EngA [Desulfotomaculum reducens MI-1] gi|172044273|sp|A4J3P1|DER_DESRM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|134051723|gb|ABO49694.1| small GTP-binding protein [Desulfotomaculum reducens MI-1] Length = 439 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 49/84 (58%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN + +AIV D+PG TRD L D + +G + DT G+ + Sbjct: 6 VAIVGRPNVGKSTLFNRIVGARIAIVEDMPGVTRDRLYQDAEWQGREFTLVDTGGLDFAE 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 DI+ + K+ L + AD+IL + Sbjct: 66 DIITAQIRKQAELAIYEADIILFV 89 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I ++G N GKSSL N + ++ IV++IPGTTRD + + G + DTAG+R Sbjct: 176 RIAVIGRPNVGKSSLVNTILGEERVIVSNIPGTTRDAIDSSFEKNGKNYVLVDTAGMRRR 235 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 I E+ + R V+ D+ L++ Sbjct: 236 KKIDLPTERYSVVRALRAVDRCDVALMV 263 >gi|126175188|ref|YP_001051337.1| GTP-binding protein EngA [Shewanella baltica OS155] gi|166225854|sp|A3D6V5|DER_SHEB5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|125998393|gb|ABN62468.1| small GTP-binding protein [Shewanella baltica OS155] Length = 488 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/98 (36%), Positives = 62/98 (63%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 K+ I+G N GKS+L N + ++ +V D PGTTRD + I ++ EG I DTAG+R Sbjct: 200 KLAIIGKPNVGKSTLTNRILGEERVVVFDEPGTTRDSIYIPMEREGREYVIIDTAGVRRR 259 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + ++EK + +T VE+A+++LL+ I++++ I+ Sbjct: 260 SKVHQVIEKFSVIKTLKAVEDANVVLLI--IDAREGIA 295 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 50/89 (56%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD L GY + DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAFLSGYEFIVVDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310 + +E + +++ +E AD++L + + + Sbjct: 65 EGIETKMAEQSLAAIEEADVVLFMTDARA 93 >gi|167753390|ref|ZP_02425517.1| hypothetical protein ALIPUT_01664 [Alistipes putredinis DSM 17216] gi|167658015|gb|EDS02145.1| hypothetical protein ALIPUT_01664 [Alistipes putredinis DSM 17216] Length = 433 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 51/156 (32%), Positives = 74/156 (47%), Gaps = 20/156 (12%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFN L + AIV GTTRD D G + DT G + Sbjct: 4 VAIVGRPNVGKSTLFNRLVGQRKAIVDATAGTTRDRHYGKTDWNGREFSVIDTGGYSVNS 63 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN-----------------SKKEISFPKNID-F 322 DDI E + ++ L +E AD+IL L E+N SKK + +D + Sbjct: 64 DDIFEDDIRRQVMLAIEEADVILFLVEVNTGITDLDQMMADILRRTSKKVLLVCNKVDNY 123 Query: 323 IFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKI 358 I + + YS E + ISS +G G +L+++I Sbjct: 124 DLIYSSHEFYSLGLGE-PYCISSMSGSGTGDLMDEI 158 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I I+G N GKSSL NAL ++ IVT I GTTRD + + G + DTAG+R+ Sbjct: 175 RITIVGRPNVGKSSLTNALLGEERNIVTPIAGTTRDAIHSRYNKYGLDFYLVDTAGMRKK 234 Query: 281 DDIVEK---EGIKRTFLEVENADLILLL 305 + E + R+ +E +D+ +L+ Sbjct: 235 GKVTEDLEFYSVMRSIRAIEESDVCILM 262 >gi|152981185|ref|YP_001353813.1| GTP-binding protein EngA [Janthinobacterium sp. Marseille] gi|166198722|sp|A6SZW6|DER_JANMA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|151281262|gb|ABR89672.1| GTP-binding protein EngA [Janthinobacterium sp. Marseille] Length = 447 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 59/98 (60%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N L ++ I D+PGTTRD + I + +G + DTAGIR Sbjct: 182 KLAIVGRPNVGKSTLVNTLLGEERVIAFDLPGTTRDSIEIPFERDGKHYTLIDTAGIRRR 241 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + +EK + +T + A+++LLL ++++++IS Sbjct: 242 GKVFEAIEKFSVVKTLQSISEANVVLLL--LDAQQDIS 277 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 81/165 (49%), Gaps = 32/165 (19%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L + A+V D+PG TRD + + + DT G Sbjct: 5 IALIGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGERPFLVIDTGGF---- 60 Query: 282 DIVEKEGI-----KRTFLEVENADLILLLKEINSKKEISFPKN---IDFIFIGTKSDL-- 331 + V KEGI K+T V AD+++ + ++ ++ ++ P + DF+ +S + Sbjct: 61 EPVAKEGIMHEMAKQTKQAVAEADVVIFI--VDGRQGLT-PHDKTITDFLRKSGRSVMLV 117 Query: 332 --------YSTYTEEY-------DHLISSFTGEGLEELINKIKSI 361 Y+T T ++ ++IS+ G+G+ +L+ + +I Sbjct: 118 VNKAEGMKYTTVTADFYELGMGDPYVISAAHGDGVNDLVEEALNI 162 >gi|153001514|ref|YP_001367195.1| GTP-binding protein EngA [Shewanella baltica OS185] gi|160876250|ref|YP_001555566.1| GTP-binding protein EngA [Shewanella baltica OS195] gi|217972557|ref|YP_002357308.1| GTP-binding protein EngA [Shewanella baltica OS223] gi|304410031|ref|ZP_07391650.1| ribosome-associated GTPase EngA [Shewanella baltica OS183] gi|307302256|ref|ZP_07582014.1| ribosome-associated GTPase EngA [Shewanella baltica BA175] gi|166225855|sp|A6WQP3|DER_SHEB8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|189037160|sp|A9KWW9|DER_SHEB9 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|254783166|sp|B8E9T1|DER_SHEB2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|151366132|gb|ABS09132.1| small GTP-binding protein [Shewanella baltica OS185] gi|160861772|gb|ABX50306.1| small GTP-binding protein [Shewanella baltica OS195] gi|217497692|gb|ACK45885.1| small GTP-binding protein [Shewanella baltica OS223] gi|304351440|gb|EFM15839.1| ribosome-associated GTPase EngA [Shewanella baltica OS183] gi|306914294|gb|EFN44715.1| ribosome-associated GTPase EngA [Shewanella baltica BA175] gi|315268439|gb|ADT95292.1| ribosome-associated GTPase EngA [Shewanella baltica OS678] Length = 488 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/98 (36%), Positives = 62/98 (63%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 K+ I+G N GKS+L N + ++ +V D PGTTRD + I ++ EG I DTAG+R Sbjct: 200 KLAIIGKPNVGKSTLTNRILGEERVVVFDEPGTTRDSIYIPMEREGREYVIIDTAGVRRR 259 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + ++EK + +T VE+A+++LL+ I++++ I+ Sbjct: 260 SKVHQVIEKFSVIKTLKAVEDANVVLLI--IDAREGIA 295 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 50/89 (56%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD L GY + DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAFLSGYEFIVVDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310 + +E + +++ +E AD++L + + + Sbjct: 65 EGIETKMAEQSLAAIEEADVVLFMTDARA 93 >gi|304382194|ref|ZP_07364702.1| ribosome-associated GTPase EngA [Prevotella marshii DSM 16973] gi|304336659|gb|EFM02887.1| ribosome-associated GTPase EngA [Prevotella marshii DSM 16973] Length = 437 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G NAGKSS+ NA +D IVT+I GTTRD + D G+ + DTAGIR Sbjct: 177 RFAVVGRPNAGKSSIINAFIGEDRNIVTEIAGTTRDSIYTRYDKFGFDFYLVDTAGIRRK 236 Query: 281 DDIVEK---EGIKRTFLEVENADLILLL 305 + + E + R+ +EN+D+ +L+ Sbjct: 237 NKVTEDLEFYSVMRSIRAIENSDVCILM 264 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 36/90 (40%), Positives = 49/90 (54%), Gaps = 1/90 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 + I+G N GKS+LFN L K AIV+D GTTRD + G + DT G + + Sbjct: 5 VAIVGRPNVGKSTLFNRLTKSRRAIVSDEAGTTRDRQYGKCEWNGREFSVVDTGGWVVNS 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310 DDI E K+ + E ADL+L L +I + Sbjct: 65 DDIFEDAIRKQVIVATEEADLVLFLVDITN 94 >gi|291557289|emb|CBL34406.1| ribosome-associated GTPase EngA [Eubacterium siraeum V10Sc8a] Length = 439 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 54/88 (61%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ ++G NAGKSSL N +A + IV++I GTTRD + ++ +G + DTAGIR Sbjct: 179 KVAVIGKPNAGKSSLVNKIAGEQRMIVSNIAGTTRDAVDTVIERDGQEYVLIDTAGIRRK 238 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +EK + R ++ ++ AD+ +++ Sbjct: 239 SKVNEQIEKYSVLRAYMAIDRADVCVIM 266 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 51/90 (56%), Gaps = 1/90 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + ++G N GKS+LFN + K ++IV D PG TRD + + G + DT GI ++ Sbjct: 5 VAVVGRPNVGKSTLFNRIVGKRMSIVDDTPGVTRDRIYAKAEWLGKEFMLVDTGGIEPDS 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310 D++ + + L ++ AD+I+ + ++ S Sbjct: 65 KDVILSQMRMQAQLAIDKADVIIFVTDVTS 94 >gi|241764499|ref|ZP_04762520.1| small GTP-binding protein [Acidovorax delafieldii 2AN] gi|241366083|gb|EER60680.1| small GTP-binding protein [Acidovorax delafieldii 2AN] Length = 462 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ + G N GKS+L N ++ + D+PGTTRD +T+ + G ++ DTAG+R Sbjct: 196 KLAVAGRPNVGKSTLINTWLGEERLVAFDMPGTTRDAITVPFERNGQRFELVDTAGLRRK 255 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +EK + +T +E+A+++LLL Sbjct: 256 GKVFEAIEKFSVVKTLQAIESANVVLLL 283 Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 I ++G N GKS+LFN L K AIV D G TRD + + + DT G + Sbjct: 20 IALVGRPNVGKSTLFNRLTKSRDAIVADFAGLTRDRHYGNGKQGKHEYIVIDTGGFEPDA 79 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 + +E K+T V AD+++ + Sbjct: 80 SSGIYREMAKQTQQAVAEADVVIFV 104 >gi|221066038|ref|ZP_03542143.1| small GTP-binding protein [Comamonas testosteroni KF-1] gi|220711061|gb|EED66429.1| small GTP-binding protein [Comamonas testosteroni KF-1] Length = 446 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ + G NAGKS+L N ++ + D+PGTTRD +T+ + G ++ DTAG+R Sbjct: 182 RLAVAGRPNAGKSTLINTWLGEERLVAFDMPGTTRDAITVPFERNGQKFELIDTAGLRRK 241 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +EK + +T +E A+++LLL Sbjct: 242 GKVFEAIEKFSVVKTLQAIEGANVVLLL 269 Score = 40.4 bits (93), Expect = 0.58, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 I ++G N GKS+LFN L K AIV D G TRD + + DT G + Sbjct: 5 IALVGRPNVGKSTLFNRLTKSRDAIVADFAGLTRDRHYGQGRQGKHEYIVIDTGGFEPDA 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 + KE K+T V AD+++ + Sbjct: 65 SRGIFKEMAKQTQQAVAEADVVIFV 89 >gi|317128566|ref|YP_004094848.1| ribosome-associated GTPase EngA [Bacillus cellulosilyticus DSM 2522] gi|315473514|gb|ADU30117.1| ribosome-associated GTPase EngA [Bacillus cellulosilyticus DSM 2522] Length = 438 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I I+G N GKSSL NA+ ++ IV+DIPGTTRD + +G + DTAG+R+ Sbjct: 177 RISIIGRPNVGKSSLTNAILGEERVIVSDIPGTTRDAIDTPFSKDGQDYVVIDTAGMRKK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + EK + R +E +D++L++ Sbjct: 237 GKVYESTEKYSVLRALRAIERSDVVLMV 264 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 2/94 (2%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN + + +AIV D PG TRD + + I DT GI D Sbjct: 6 LAIVGRPNVGKSTIFNRIVGERIAIVEDKPGVTRDRIYSSAEWLNKEFNIIDTGGIEIND 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + + + + L +E AD+I + +N ++ I+ Sbjct: 66 EPLMVQMRYQAELAIEEADVICFI--VNGREGIT 97 >gi|154494318|ref|ZP_02033638.1| hypothetical protein PARMER_03672 [Parabacteroides merdae ATCC 43184] gi|154085762|gb|EDN84807.1| hypothetical protein PARMER_03672 [Parabacteroides merdae ATCC 43184] Length = 437 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/88 (40%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I I+G NAGKSSL NA +D IVTDI GTTRD + + G + DTAGIR+ Sbjct: 177 RIAIIGRPNAGKSSLINAFIGEDRHIVTDIAGTTRDSIYTKYNKFGLNFYLVDTAGIRKK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E + R+ +EN+D+ +L+ Sbjct: 237 GKVNEDLEYYSVIRSIRAIENSDVCVLM 264 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 1/91 (1%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277 G + I+G N GKS+LFN L + AIV + GTTRD + G + DT G + Sbjct: 2 GNIVAIVGRPNVGKSTLFNRLTQTRQAIVNEEAGTTRDRQYGKAEWTGKEFSLIDTGGWV 61 Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEI 308 +DD+ E+E K+ + +E AD+IL + ++ Sbjct: 62 INSDDVFEEEINKQVKVALEEADVILFVVDV 92 >gi|255014874|ref|ZP_05287000.1| GTP-binding protein EngA [Bacteroides sp. 2_1_7] gi|256840958|ref|ZP_05546465.1| ribosome-associated GTPase EngA [Parabacteroides sp. D13] gi|298375727|ref|ZP_06985683.1| ribosome-associated GTPase EngA [Bacteroides sp. 3_1_19] gi|256736801|gb|EEU50128.1| ribosome-associated GTPase EngA [Parabacteroides sp. D13] gi|298266764|gb|EFI08421.1| ribosome-associated GTPase EngA [Bacteroides sp. 3_1_19] Length = 437 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/88 (40%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I I+G NAGKSSL NA +D IVTDI GTTRD + + G + DTAGIR+ Sbjct: 177 RIAIIGRPNAGKSSLINAFIGEDRHIVTDIAGTTRDSIYTKYNKFGLNFYLVDTAGIRKK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E + R+ +EN+D+ +L+ Sbjct: 237 GKVNEDLEYYSVIRSIRAIENSDVCVLM 264 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 1/91 (1%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277 G + I+G N GKS+LFN L AIV + GTTRD ++ G + DT G + Sbjct: 2 GNIVAIVGRPNVGKSTLFNRLTGTRQAIVNEEAGTTRDRQYGKVEWTGKEFSLIDTGGWV 61 Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEI 308 ++D+ E+E K+ + +E AD+IL + ++ Sbjct: 62 VNSEDVFEEEINKQVKVAIEEADVILFVVDV 92 >gi|209964703|ref|YP_002297618.1| GTP-binding protein EngA [Rhodospirillum centenum SW] gi|209958169|gb|ACI98805.1| GTP-binding protein, putative [Rhodospirillum centenum SW] Length = 478 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/85 (41%), Positives = 49/85 (57%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET- 280 + I+G N GKS+LFN L K +A+V D PG TRD + L G + + DTAG+ E Sbjct: 10 VAIVGRPNVGKSTLFNRLVGKRLALVDDTPGVTRDWRAGEARLAGIELTVVDTAGLEEVF 69 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 DD +E ++T +E AD+ L L Sbjct: 70 DDSLEARMRRQTERAIERADVALFL 94 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 ++ I+G N GKS+L NAL ++ + G TRD + ++ + G V++ DTAG+R Sbjct: 212 QLAIVGRPNVGKSTLLNALVGEERVLTGPEAGMTRDAIAVEWNWRGQPVRLVDTAGLRRR 271 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305 D +EK + T + A +++L+ Sbjct: 272 ARVDGKLEKLAVADTLRVIRMAHVVVLV 299 >gi|188533178|ref|YP_001906975.1| GTP-binding protein EngA [Erwinia tasmaniensis Et1/99] gi|238689730|sp|B2VE93|DER_ERWT9 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|188028220|emb|CAO96078.1| GTP-binding protein [Erwinia tasmaniensis Et1/99] Length = 499 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 56/88 (63%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + +D +V D+PGTTRD + I ++ +G + DTAG+R+ Sbjct: 212 KLAIVGRPNVGKSTLTNRILGEDRVVVFDMPGTTRDSIYIPMERDGREYILIDTAGVRKR 271 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + VEK + +T +E+A++++L+ Sbjct: 272 GKVTETVEKFSVIKTLQAIEDANVVMLV 299 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG DT GI + Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGNE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE +++ L +E AD++L + Sbjct: 65 EGVETRMAEQSLLAIEEADVVLFM 88 >gi|251796400|ref|YP_003011131.1| GTP-binding protein EngA [Paenibacillus sp. JDR-2] gi|247544026|gb|ACT01045.1| small GTP-binding protein [Paenibacillus sp. JDR-2] Length = 440 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/103 (34%), Positives = 59/103 (57%), Gaps = 8/103 (7%) Query: 211 KLGEIIRNGY-----KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE 265 KL E+ +GY ++ ++G N GKSSL NAL ++ IV+++ GTTRD + + + Sbjct: 163 KLPELEDDGYDDDVIRVALIGRPNVGKSSLVNALLGEERVIVSNVAGTTRDAIDTPFERD 222 Query: 266 GYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305 G + DTAG+R+ + EK + R +E AD++L+L Sbjct: 223 GQKYVLIDTAGMRKRGKVYESTEKYSVMRALKAIERADVVLVL 265 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 I I+G N GKS++FN + +AIV D PG TRD L + G I DT GI + Sbjct: 6 IAIVGRPNVGKSTIFNRVVGDRLAIVEDKPGVTRDRLYSPGEWNGKAFSIVDTGGIEIDG 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 +D + K + L +E AD+I+ + Sbjct: 66 EDEIMKSVRMQAELAIEEADVIIFM 90 >gi|74316616|ref|YP_314356.1| GTP-binding protein EngA [Thiobacillus denitrificans ATCC 25259] gi|123773049|sp|Q3SL66|DER_THIDA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|74056111|gb|AAZ96551.1| GTP-binding protein [Thiobacillus denitrificans ATCC 25259] Length = 469 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 59/98 (60%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI ++G N GKS+L NAL + I D PGTTRD + +D + G + DTAG+R Sbjct: 177 KIALVGRPNVGKSTLVNALVGAERVIAFDQPGTTRDSIYVDFERGGKPYVLIDTAGVRRR 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + VEK + +T +E+A++++L+ +++++ IS Sbjct: 237 GKVFETVEKFSVIKTLQAIEDANVVVLV--LDARENIS 272 Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280 +V++G N GKS+LFN L A+V D+PG TRD + G + DT G+ Sbjct: 5 LVLVGRPNVGKSTLFNRLTGTRDALVHDLPGMTRDRHYGRGRIGGKPYLVVDTGGLEPVV 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 D + E ++T ++ AD I+ + Sbjct: 65 KDGILAEMARQTLQAIDEADAIIFM 89 >gi|300717947|ref|YP_003742750.1| GTP-binding protein [Erwinia billingiae Eb661] gi|299063783|emb|CAX60903.1| GTP-binding protein [Erwinia billingiae Eb661] Length = 495 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 62/98 (63%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + +D +V D PGTTRD + I ++ +G + DTAG+R+ Sbjct: 210 KLAIVGRPNVGKSTLTNRILGEDRVVVFDAPGTTRDSIYIPMERDGREYILIDTAGVRKR 269 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + VEK + +T +E+A++++L+ I++++ IS Sbjct: 270 GKVTETVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 305 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 45/84 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L A+V D PG TRD ++EG DT GI + Sbjct: 5 VALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGQQFICIDTGGIDGNE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE ++ L +E AD++L + Sbjct: 65 EGVETRMAAQSLLAIEEADVVLFM 88 >gi|262037969|ref|ZP_06011387.1| ribosome-associated GTPase EngA [Leptotrichia goodfellowii F0264] gi|261748010|gb|EEY35431.1| ribosome-associated GTPase EngA [Leptotrichia goodfellowii F0264] Length = 439 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/90 (40%), Positives = 53/90 (58%), Gaps = 3/90 (3%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G I ILG NAGKSSL N L ++ +IV+DI GTTRD + L +G + + DTAGIR Sbjct: 175 GLCIAILGRPNAGKSSLINKLLNEERSIVSDIAGTTRDAIDSTLKYDGEIYTLIDTAGIR 234 Query: 279 ---ETDDIVEKEGIKRTFLEVENADLILLL 305 + +D +E + R ++ D+ +L+ Sbjct: 235 RKSKIEDSIEYYSVLRAVKSIKRVDVCVLM 264 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 50/85 (58%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFN L ++IV D PG TRD L + + G + DT G+ +T Sbjct: 5 VAIVGRPNVGKSTLFNKLVGDRLSIVKDEPGVTRDRLYRETEWSGKNFILVDTGGLEPKT 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 DD + ++ ++ + ++ AD+++ L Sbjct: 65 DDFMMRKIKEQAQVAIDEADVVIFL 89 >gi|283779752|ref|YP_003370507.1| small GTP-binding protein [Pirellula staleyi DSM 6068] gi|283438205|gb|ADB16647.1| small GTP-binding protein [Pirellula staleyi DSM 6068] Length = 486 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/91 (39%), Positives = 56/91 (61%), Gaps = 1/91 (1%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++VI+G N GKSSL N LA K ++IV D G TRD +T ++ EG ++ DT GI Sbjct: 5 QVVIVGRPNVGKSSLLNWLAGKRISIVDDTAGVTRDRITYLMEEEGRFFELVDTGGIGIV 64 Query: 281 D-DIVEKEGIKRTFLEVENADLILLLKEINS 310 D D + K+ ++ + +E+ADL+L + + S Sbjct: 65 DCDNLTKQVEQQIEIAIESADLVLFVVDTRS 95 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 80/177 (45%), Gaps = 28/177 (15%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I G N GKS+ N LA+ + IV+++ GTTRD + + +L+G DT G+R Sbjct: 180 KVAICGRRNTGKSTFVNTLARAERVIVSEVAGTTRDSIDVRFELDGKTFMAIDTPGLRRN 239 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI-----DFIFIGTKS 329 + ++ R + AD++LL K+ SK + K I IF+ K Sbjct: 240 RSVRTDIDFYSTHRAQRSIRRADVVLLFFDCKQRLSKVDKQLCKYIADNYRPCIFVVNKW 299 Query: 330 DLY--STYTEEY-DHLISSF--------------TGEGLEELINKIKSILSNKFKKL 369 DL TE + D+L +F TG+ ++ L+N + + +++ Sbjct: 300 DLLYGQMPTERWVDYLRDNFPTMWHVPIAFVTGQTGKNVKALLNHAQMLYKQSLERV 356 >gi|28210831|ref|NP_781775.1| GTP-binding protein EngA [Clostridium tetani E88] gi|37999662|sp|Q895X8|DER_CLOTE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|28203269|gb|AAO35712.1| GTP-binding protein [Clostridium tetani E88] Length = 438 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/85 (38%), Positives = 51/85 (60%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFN LA K +AIV D PG TRD + + + I DT GI E+ Sbjct: 6 VAIVGRPNVGKSTLFNKLAGKRIAIVEDTPGVTRDRIYAQAEWLNHNFTIIDTGGIEPES 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 +DI+ + ++ + +E AD+I+ + Sbjct: 66 EDIIVAQMRRQAEMAIEMADVIMFI 90 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 +I +G N GKSSL N + ++ IV++IPGTTRD + L+ + + DTAG+R Sbjct: 178 RIAFVGKPNVGKSSLINKILGEERNIVSNIPGTTRDAIDSFLERDEDKFILIDTAGLRRR 237 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305 + D +E+ RT+ ++ AD+ +LL Sbjct: 238 SKVKDQIERYSTVRTYAAIDRADVCILL 265 >gi|300726752|ref|ZP_07060182.1| ribosome-associated GTPase EngA [Prevotella bryantii B14] gi|299775865|gb|EFI72445.1| ribosome-associated GTPase EngA [Prevotella bryantii B14] Length = 437 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G NAGKSS+ NA +D IVT+I GTTRD + D G+ + DTAGIR Sbjct: 177 RFAVVGRPNAGKSSIINAFIGEDRNIVTEIAGTTRDSIYTKYDKFGFDFYLVDTAGIRRK 236 Query: 281 DDIVEK---EGIKRTFLEVENADLILLL 305 + + E + R+ +EN+D+ +L+ Sbjct: 237 NKVTEDLEFYSVMRSIRAIENSDVCILM 264 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 + I+G N GKS+LFN + AIV+D GTTRD + G + DT G + ++ Sbjct: 5 VAIVGRPNVGKSTLFNRFTQSRRAIVSDTAGTTRDRQYGKVSWNGKDFSVVDTGGWVVKS 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 DDI E ++ + E ADL+L L Sbjct: 65 DDIFEDAIRRQVLVATEEADLVLFL 89 >gi|218262398|ref|ZP_03476878.1| hypothetical protein PRABACTJOHN_02553 [Parabacteroides johnsonii DSM 18315] gi|218223401|gb|EEC96051.1| hypothetical protein PRABACTJOHN_02553 [Parabacteroides johnsonii DSM 18315] Length = 437 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/88 (40%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I I+G NAGKSSL NA +D IVTDI GTTRD + + G + DTAGIR+ Sbjct: 177 RIAIIGRPNAGKSSLINAFIGEDRHIVTDIAGTTRDSIYTKYNKFGLNFYLVDTAGIRKK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E + R+ +EN+D+ +L+ Sbjct: 237 GKVNEDLEYYSVIRSIRAIENSDVCVLM 264 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 1/91 (1%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277 G + I+G N GKS+LFN L + AIV + GTTRD ++ + DT G + Sbjct: 2 GNIVAIVGRPNVGKSTLFNRLTQTRQAIVNEEAGTTRDRQYGKVEWTSKEFSLIDTGGWV 61 Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEI 308 +DD+ E+E K+ + +E AD+IL + ++ Sbjct: 62 INSDDVFEEEINKQVKIALEEADVILFVVDV 92 >gi|312131342|ref|YP_003998682.1| ribosome-associated gtpase enga [Leadbetterella byssophila DSM 17132] gi|311907888|gb|ADQ18329.1| ribosome-associated GTPase EngA [Leadbetterella byssophila DSM 17132] Length = 437 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/88 (40%), Positives = 53/88 (60%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I ILG NAGKSS NAL KD +IVTDI GTTRD + + G ++DTAGIR+ Sbjct: 179 RIAILGRPNAGKSSFLNALLGKDRSIVTDIAGTTRDAIDTRYKMFGKDFILTDTAGIRKK 238 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E + R+ ++ +D+ ++L Sbjct: 239 AKVNEDLEFYSVLRSIKALDKSDVCIIL 266 Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 + I+G N GKS+LFN L ++ VAI + PG TRD + + DT G + + Sbjct: 5 VAIVGRPNVGKSTLFNRLIEERVAITDNQPGVTRDRHYGNAFWLKKHFTLIDTGGYVVGS 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 DD E+ + L +E A +IL + Sbjct: 65 DDTFEEAIRSQVELAIEEATVILFV 89 >gi|281421766|ref|ZP_06252765.1| ribosome-associated GTPase EngA [Prevotella copri DSM 18205] gi|281404261|gb|EFB34941.1| ribosome-associated GTPase EngA [Prevotella copri DSM 18205] Length = 437 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 + I+G N GKS+LFN L + AIV+D GTTRD G + DT G + ++ Sbjct: 5 VAIVGRPNVGKSTLFNRLTQSRRAIVSDTAGTTRDRQYGKCSWNGREFSVVDTGGWVVKS 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310 DDI E K+ + E ADL+L L ++N+ Sbjct: 65 DDIFEDAIRKQVLVATEEADLVLFLVDVNT 94 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G NAGKSS+ NA +D IVT+I GTTRD + D G+ + DTAGIR Sbjct: 177 RFAVVGRPNAGKSSIINAFIGEDRNIVTEIAGTTRDSIYTRYDKFGFDFYLVDTAGIRRK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + + +E + R+ +EN+D+ +L+ Sbjct: 237 NKVSEDLEFYSVMRSIRAIENSDVCILM 264 >gi|296104190|ref|YP_003614336.1| GTP-binding protein EngA [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058649|gb|ADF63387.1| GTP-binding protein EngA [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 511 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ + + DTAG+R+ Sbjct: 225 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRKR 284 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D+VEK + +T +E+A+++LL+ I++++ IS Sbjct: 285 GKITDVVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 320 Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG DT GI T+ Sbjct: 25 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGTE 84 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 D VE +++ L +E AD++L + Sbjct: 85 DGVETRMAEQSLLAIEEADVVLFM 108 >gi|329904161|ref|ZP_08273691.1| GTP-binding protein EngA [Oxalobacteraceae bacterium IMCC9480] gi|327548117|gb|EGF32835.1| GTP-binding protein EngA [Oxalobacteraceae bacterium IMCC9480] Length = 340 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/107 (35%), Positives = 62/107 (57%), Gaps = 9/107 (8%) Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 LG+ IR I I+G N GKS++ N L ++ I D+PGTTRD + I + G + Sbjct: 131 LGKAIR----IAIVGRPNVGKSTMVNTLLGEERVIAFDMPGTTRDSIEIPFERSGQQYTL 186 Query: 272 SDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 DTAGIR + +EK + +T + A+++LLL ++++++IS Sbjct: 187 IDTAGIRRRGKVFEAIEKFSVVKTLQSISEANVVLLL--LDAQQDIS 231 >gi|323453254|gb|EGB09126.1| hypothetical protein AURANDRAFT_37344 [Aureococcus anophagefferens] Length = 540 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/134 (33%), Positives = 71/134 (52%), Gaps = 11/134 (8%) Query: 191 EVLNDIL-FLKNDISSHISQGKLGEII--RNGYKIVILGHSNAGKSSLFNAL--AKKDVA 245 EVL+ +L L I + +Q K + I + + LG N GKSSL N + A Sbjct: 228 EVLDALLPALDASIEAKAAQIKTMDAIDAKPHVNVCFLGRPNVGKSSLLNRFLGPGETRA 287 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE----TDDIVEKEGIKRTFLEVENADL 301 IV+D+ GTTRD + +LD++G + + DTAG+R T E E + R AD+ Sbjct: 288 IVSDVAGTTRDAVDAELDVDGTIFRFVDTAGVRRKARVTKQGTEPEMVARALRTARLADV 347 Query: 302 ILLLKEINSKKEIS 315 +LL+ +++ +E+S Sbjct: 348 VLLV--VDATQELS 359 >gi|308234454|ref|ZP_07665191.1| small GTP-binding protein [Atopobium vaginae DSM 15829] gi|328944301|ref|ZP_08241765.1| ribosome-associated GTPase EngA [Atopobium vaginae DSM 15829] gi|327491220|gb|EGF22995.1| ribosome-associated GTPase EngA [Atopobium vaginae DSM 15829] Length = 438 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/87 (36%), Positives = 51/87 (58%), Gaps = 3/87 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKSSL N L++ ++V D GTTRD + I D +G +++ DTAG+R+ Sbjct: 181 IAVIGRPNVGKSSLVNKLSRSQRSLVADYAGTTRDAIDITFDYKGQTIRLVDTAGMRKKT 240 Query: 282 DI---VEKEGIKRTFLEVENADLILLL 305 + VE + R ++ AD+ LL+ Sbjct: 241 QVHEDVEYYSMVRGLQAMDKADVCLLV 267 Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 8/89 (8%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+L N LA AIV + G TRD D G + DT GI + Sbjct: 6 VAIVGRPNVGKSTLVNRLATTKSAIVHESRGVTRDRSYHACDWNGREFTLIDTGGI---E 62 Query: 282 DIVEKE----GIK-RTFLEVENADLILLL 305 + K+ GI+ + L + AD+I+++ Sbjct: 63 SLKSKDRFALGIREQALLGCDEADVIVMV 91 >gi|88809283|ref|ZP_01124792.1| GTP-binding protein EngA [Synechococcus sp. WH 7805] gi|88787225|gb|EAR18383.1| GTP-binding protein EngA [Synechococcus sp. WH 7805] Length = 455 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSL NA+ + AIV+ I GTTRD + L E ++ DTAGIR Sbjct: 179 QLAIIGRPNVGKSSLLNAICGEQRAIVSPIRGTTRDTIDTSLVRENRPWRLVDTAGIRRR 238 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + E GI R+F +E +D+ +L+ Sbjct: 239 RSVSYGPEFFGINRSFKAIERSDVCVLV 266 Score = 43.1 bits (100), Expect = 0.097, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 30/61 (49%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+L N L AIV D PG TRD D K+ DT G+ D Sbjct: 6 VAIIGRPNVGKSTLVNRLCHSREAIVHDEPGVTRDRTYQDGYWSDREFKVVDTGGLVFDD 65 Query: 282 D 282 D Sbjct: 66 D 66 >gi|325294541|ref|YP_004281055.1| GTP-binding protein engA [Desulfurobacterium thermolithotrophum DSM 11699] gi|325064989|gb|ADY72996.1| GTP-binding protein engA [Desulfurobacterium thermolithotrophum DSM 11699] Length = 478 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/84 (39%), Positives = 51/84 (60%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKSSLFN L +K VAI+ D PG TRD + + D++ + V + DT G+ + Sbjct: 7 ISIVGRPNVGKSSLFNRLLEKKVAIIDDTPGVTRDRIVQEADIDDHKVILVDTGGVDTSG 66 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + KE ++ +E AD+I+ + Sbjct: 67 EGFAKETTEQAKRAMEEADIIVFV 90 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 35/87 (40%), Positives = 49/87 (56%), Gaps = 2/87 (2%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L NAL ++ AIV+DIPGTTRD + + DTAGIR Sbjct: 222 KVAIVGRPNMGKSTLLNALVGEERAIVSDIPGTTRDAIDTYAKIGDDEFIFIDTAGIRRR 281 Query: 281 DDI--VEKEGIKRTFLEVENADLILLL 305 I +E R ++ AD+++LL Sbjct: 282 GKIKDIEYYSYLRALDAIDRADVVVLL 308 >gi|120437317|ref|YP_863003.1| GTP-binding protein EngA [Gramella forsetii KT0803] gi|166198719|sp|A0M5P1|DER_GRAFK RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|117579467|emb|CAL67936.1| GTP-binding protein EngA [Gramella forsetii KT0803] Length = 434 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G NAGKSS NAL +D IVTDI GTTRD + + G+ + DTAGIR Sbjct: 176 RFAVVGRPNAGKSSFINALIGEDRYIVTDIAGTTRDSIDTRYNRFGFEFNLVDTAGIRRK 235 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E + R+ +EN D+ L++ Sbjct: 236 SKVKENLEFYSVMRSVRAIENCDVCLVV 263 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 1/93 (1%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277 G + I+G N GKS+ FN L ++ AI+ + G TRD D G + DT G + Sbjct: 2 GNIVAIVGRPNVGKSTFFNRLIQRREAIIDSVSGVTRDRHYGKSDWNGKKFSLIDTGGYV 61 Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINS 310 + +DDI E E K+ L ++ AD I+ + ++ S Sbjct: 62 KGSDDIFEAEIDKQVELAIDEADAIIFIVDVES 94 >gi|292806650|gb|ADE42455.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L GY V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIVLNGYEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|262280930|ref|ZP_06058713.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] gi|262257830|gb|EEY76565.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] Length = 469 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 55/90 (61%), Gaps = 3/90 (3%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G ++ I+G N GKS+L N L +D + D PGTTRD + I + +G + DTAG+R Sbjct: 176 GLRLAIIGRPNVGKSTLVNRLLGEDRVVAFDQPGTTRDSIYIPFERDGRQYTLIDTAGVR 235 Query: 279 ---ETDDIVEKEGIKRTFLEVENADLILLL 305 + D+++EK I +T +++A +I+++ Sbjct: 236 RKGKVDEMIEKFSIVKTLQAIKDAHVIVVV 265 Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust. Identities = 17/35 (48%), Positives = 22/35 (62%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 I ++G N GKS+LFN + K A+V D G TRD Sbjct: 5 IALIGRPNVGKSTLFNQITKSRDALVADFAGLTRD 39 >gi|24374819|ref|NP_718862.1| GTP-binding protein EngA [Shewanella oneidensis MR-1] gi|37999695|sp|Q8EC36|DER_SHEON RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|24349505|gb|AAN56306.1|AE015769_2 GTP-binding protein EngA [Shewanella oneidensis MR-1] Length = 487 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 56/88 (63%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 K+ I+G N GKS+L N + ++ +V D PGTTRD + I ++ +G I DTAG+R Sbjct: 200 KLAIIGKPNVGKSTLTNRILGEERVVVYDEPGTTRDSIYIPMERDGREYVIIDTAGVRRR 259 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305 + +++EK + +T VE+A+++LL+ Sbjct: 260 SKVHEVIEKFSVIKTLKAVEDANVVLLI 287 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 50/89 (56%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD L GY + DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAFLSGYEFIVVDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310 + +E + +++ +E AD++L + + + Sbjct: 65 EGIETKMAEQSLAAIEEADVVLFMTDARA 93 >gi|300724175|ref|YP_003713492.1| GTP-binding protein [Xenorhabdus nematophila ATCC 19061] gi|297630709|emb|CBJ91374.1| GTP-binding protein, essential for cell growth [Xenorhabdus nematophila ATCC 19061] Length = 496 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G + DTAG+R+ Sbjct: 211 KLAIVGRPNVGKSTLTNRILGEERVVVFDMPGTTRDSIYIPMERDGREYILIDTAGVRKR 270 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + VEK + +T +E+A+++LL+ I++++ IS Sbjct: 271 GKVTETVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 306 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 47/162 (29%), Positives = 80/162 (49%), Gaps = 19/162 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG I DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGQEFIIIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL---------------KEINSKKEISF--PKNIDFIF 324 + VE ++ + +E AD++L + K + S+++ +F D I Sbjct: 65 EGVETHMAAQSLMAIEEADIVLFMVDARSGLMPADHAIAKHLRSREKATFLVANKTDGID 124 Query: 325 IGTK-SDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365 I T ++ YS + + I++ G G+ +LI ++ S+K Sbjct: 125 IETSVAEFYSLGLGDI-YSIAASHGRGVTQLIERVLRPFSDK 165 >gi|56461130|ref|YP_156411.1| GTP-binding protein EngA [Idiomarina loihiensis L2TR] gi|81821723|sp|Q5QYB3|DER_IDILO RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|56180140|gb|AAV82862.1| GTPase EngA [Idiomarina loihiensis L2TR] Length = 479 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 50/84 (59%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD + +GY + DT GI + Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQANYDGYQFIVIDTGGIHGDE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + +++E K++ L V+ AD++L + Sbjct: 65 EGIDEEMAKQSLLAVDEADVVLFM 88 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 32/98 (32%), Positives = 59/98 (60%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I + + DTAG+R Sbjct: 193 KLAIVGRPNVGKSTLINRILGEERVVVYDMPGTTRDSVYIPMQRNEREYVLIDTAGVRRR 252 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 I +EK + +T +E+A+++L++ +++++ IS Sbjct: 253 GRIGEAIEKFSVVKTLQAIEDANVVLIV--VDARETIS 288 >gi|281425284|ref|ZP_06256197.1| hypothetical protein HMPREF0971_02256 [Prevotella oris F0302] gi|299141484|ref|ZP_07034620.1| ribosome-associated GTPase EngA [Prevotella oris C735] gi|281400577|gb|EFB31408.1| ribosome-associated GTPase EngA [Prevotella oris F0302] gi|298576820|gb|EFI48690.1| ribosome-associated GTPase EngA [Prevotella oris C735] Length = 437 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G NAGKSS+ NA +D IVT+I GTTRD + D G+ + DTAGIR Sbjct: 177 RFAVVGRPNAGKSSIINAFIGEDRNIVTEIAGTTRDSIYTRFDKFGFDFYLVDTAGIRRK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + + +E + R+ +EN+D+ +L+ Sbjct: 237 NKVSEDLEFYSVMRSIRAIENSDVCILM 264 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 69/155 (44%), Gaps = 18/155 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 + I+G N GKS+LFN L + AIV+D GTTRD + DT G + ++ Sbjct: 5 VAIVGRPNVGKSTLFNRLTQSRRAIVSDTAGTTRDRQYGKCSWNAKEFSVVDTGGWVVKS 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332 DDI E ++ + E ADL+L L ++ + I + I + K D Sbjct: 65 DDIFEDAIRRQVLVATEEADLVLFLVDVTTGVTDWDEDVATILRRAKLPVILVANKVDNS 124 Query: 333 STYTEEYD---------HLISSFTGEGLEELINKI 358 S Y E + IS+ TG G +L++ I Sbjct: 125 SEYYEAAEFYKLGIGEPQCISAATGGGTGDLLDMI 159 >gi|170076756|ref|YP_001733394.1| GTP-binding protein EngA [Synechococcus sp. PCC 7002] gi|238692797|sp|B1XLH8|DER_SYNP2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|169884425|gb|ACA98138.1| GTPase of unknown function [Synechococcus sp. PCC 7002] Length = 453 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 34/90 (37%), Positives = 51/90 (56%), Gaps = 3/90 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKSSL NAL + AIV+ I GTTRD + ++ G ++ DTAGIR Sbjct: 179 VAIIGRPNVGKSSLLNALTGEQRAIVSPISGTTRDAIDTIIERNGQQYRLIDTAGIRRKK 238 Query: 282 DI---VEKEGIKRTFLEVENADLILLLKEI 308 ++ E I R F + AD++L + ++ Sbjct: 239 NVDYGAEFFSINRAFKAIRRADVVLFVIDV 268 Score = 40.8 bits (94), Expect = 0.49, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 29/56 (51%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 I ++G N GKS+L N +A AIV D PG TRD + +I DT GI Sbjct: 6 IAVIGRPNVGKSTLVNRIAGDQQAIVHDQPGITRDRTYRPGFWQDRNFQIVDTGGI 61 >gi|168182597|ref|ZP_02617261.1| ribosome-associated GTPase EngA [Clostridium botulinum Bf] gi|237795959|ref|YP_002863511.1| GTP-binding protein EngA [Clostridium botulinum Ba4 str. 657] gi|259645868|sp|C3L0M1|DER_CLOB6 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|182674194|gb|EDT86155.1| ribosome-associated GTPase EngA [Clostridium botulinum Bf] gi|229263345|gb|ACQ54378.1| ribosome-associated GTPase EngA [Clostridium botulinum Ba4 str. 657] Length = 439 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/85 (37%), Positives = 52/85 (61%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFN LA K ++IV D PG TRD + + + Y + DT GI E+ Sbjct: 6 VAIVGRPNVGKSTLFNKLAGKRISIVQDTPGVTRDRIYAEAEWLNYKFTMIDTGGIEPES 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 +DI+ + ++ + +E A++I+ L Sbjct: 66 EDIIVSQMRRQAQIAIEMANVIIFL 90 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 32/87 (36%), Positives = 51/87 (58%), Gaps = 3/87 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I +G N GKSSL N L ++ IV+DIPGTTRD + ++ + + DTAG+R Sbjct: 179 IAFIGKPNVGKSSLINKLLGEERLIVSDIPGTTRDSIDSYVNTDFGEFTLIDTAGLRRKS 238 Query: 282 DI---VEKEGIKRTFLEVENADLILLL 305 + +E+ + RT+ +E AD+ +L+ Sbjct: 239 KVKEEIERYSVIRTYASIERADVCILM 265 >gi|183220801|ref|YP_001838797.1| GTP-binding protein EngA [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910901|ref|YP_001962456.1| GTP-binding protein EngA [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775577|gb|ABZ93878.1| GTPase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779223|gb|ABZ97521.1| GTP-binding protein EngA [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 450 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 54/88 (61%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 KI I+G N+GKSSL N A+V+++PGTTRD ++ + + ++I DTAGIR Sbjct: 183 KIAIIGKPNSGKSSLLNTFLGYKRAVVSEVPGTTRDSVSDQFFFQNHKLEIIDTAGIRRK 242 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305 +T + +E KRT + AD+++LL Sbjct: 243 SKTGESLEFYSYKRTLHSLGEADVVVLL 270 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 3/85 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK--ISDTAGIR- 278 + I+G N GKS+LFNA+ + AI + G TRDVL ++ + + +SDT G+ Sbjct: 7 VTIVGRQNVGKSTLFNAILRAQSAITENTAGVTRDVLQKTVERAEFKIPFTLSDTPGLDI 66 Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303 E D + KE I+ F + ++DLIL Sbjct: 67 ENIDEISKEIIEIAFEHLRHSDLIL 91 >gi|122702869|emb|CAL88624.1| GTPase [Helicobacter pylori] Length = 170 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/82 (43%), Positives = 51/82 (62%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE V+ +DLIL Sbjct: 69 ALLSKEIKALNLKAVQMSDLIL 90 >gi|113969576|ref|YP_733369.1| GTP-binding protein EngA [Shewanella sp. MR-4] gi|117919682|ref|YP_868874.1| GTP-binding protein EngA [Shewanella sp. ANA-3] gi|123029832|sp|Q0HKV5|DER_SHESM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|166225858|sp|A0KUJ9|DER_SHESA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|113884260|gb|ABI38312.1| small GTP-binding protein [Shewanella sp. MR-4] gi|117612014|gb|ABK47468.1| small GTP-binding protein [Shewanella sp. ANA-3] Length = 488 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 K+ I+G N GKS+L N + ++ +V D PGTTRD + I ++ +G I DTAG+R Sbjct: 200 KLAIIGKPNVGKSTLTNRILGEERVVVYDEPGTTRDSIYIPMERDGREYVIIDTAGVRRR 259 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + +++EK + +T VE+A+++LL+ I++++ I+ Sbjct: 260 SKVHEVIEKFSVIKTLKAVEDANVVLLI--IDAREGIA 295 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 50/89 (56%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD L GY + DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAFLSGYEFIVVDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310 + +E + +++ +E AD++L + + + Sbjct: 65 EGIETKMAEQSLAAIEEADVVLFMTDARA 93 >gi|328955502|ref|YP_004372835.1| ribosome-associated GTPase EngA [Coriobacterium glomerans PW2] gi|328455826|gb|AEB07020.1| ribosome-associated GTPase EngA [Coriobacterium glomerans PW2] Length = 445 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/87 (37%), Positives = 53/87 (60%), Gaps = 3/87 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G NAGKSSLFN + + +IV+D+ GTTRD + + + L ++ DTAGIR+ Sbjct: 181 VAIIGRPNAGKSSLFNKMIGSERSIVSDVAGTTRDAIDTIVRRDARLYRMVDTAGIRKKS 240 Query: 282 DI---VEKEGIKRTFLEVENADLILLL 305 ++ VE + R ++ AD+ LL+ Sbjct: 241 NVYENVEYYSMVRGLRAIDRADVALLV 267 Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 30/56 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 + ++G N GKS+L N LA+ AIV + G TRD D D G I DT GI Sbjct: 5 VAVVGRPNVGKSTLVNRLAQTSEAIVHETRGVTRDRSYHDADWAGREFTIVDTGGI 60 >gi|114046809|ref|YP_737359.1| GTP-binding protein EngA [Shewanella sp. MR-7] gi|123131595|sp|Q0HX53|DER_SHESR RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|113888251|gb|ABI42302.1| small GTP-binding protein [Shewanella sp. MR-7] Length = 488 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 56/88 (63%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 K+ I+G N GKS+L N + ++ +V D PGTTRD + I ++ +G I DTAG+R Sbjct: 200 KLAIIGKPNVGKSTLTNRILGEERVVVYDEPGTTRDSIYIPMERDGREYVIIDTAGVRRR 259 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305 + +++EK + +T VE+A+++LL+ Sbjct: 260 SKVHEVIEKFSVIKTLKAVEDANVVLLI 287 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 50/89 (56%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD L GY + DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAFLSGYEFIVVDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310 + +E + +++ +E AD++L + + + Sbjct: 65 EGIETKMAEQSLAAIEEADVVLFMTDARA 93 >gi|332703981|ref|ZP_08424069.1| GTP-binding protein engA [Desulfovibrio africanus str. Walvis Bay] gi|332554130|gb|EGJ51174.1| GTP-binding protein engA [Desulfovibrio africanus str. Walvis Bay] Length = 443 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 51/172 (29%), Positives = 79/172 (45%), Gaps = 27/172 (15%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 G +I LG NAGKSSL N+L D IV+ + GTTRD + + ++EG DTAG+ Sbjct: 178 QGLRIAFLGKPNAGKSSLVNSLTGSDRVIVSPVAGTTRDSVDVTFEVEGKRYTFVDTAGV 237 Query: 278 RET---DDIVEKEGIKRTFLEVENADLILLLKEINS------KKEISF--PKNIDFIFIG 326 R+ +D +E+ + R + A + +L+ + + KK +SF + FI + Sbjct: 238 RKRTKIEDNLEQFSVLRALKASKKAQITVLVLDAQAGMTTQDKKLLSFLEKEKTPFIAVI 297 Query: 327 TKSDLYS-----TYTEEYDH-----------LISSFTGEGLEELINKIKSIL 362 K DL E Y S+ TG G+ EL+ + +L Sbjct: 298 NKMDLVPRDERKVAREHYKKELSIASYAPVTFTSAMTGVGVAELLPMAERLL 349 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/64 (43%), Positives = 39/64 (60%), Gaps = 1/64 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN L +++ AI D PG TRD + + DL G V DT G+ E + Sbjct: 5 VAIIGRPNVGKSTLFNRLLRREAAITHDRPGVTRDRIYAETDLGGRKVAFVDTGGL-EME 63 Query: 282 DIVE 285 + VE Sbjct: 64 EQVE 67 >gi|282878065|ref|ZP_06286870.1| ribosome-associated GTPase EngA [Prevotella buccalis ATCC 35310] gi|281299805|gb|EFA92169.1| ribosome-associated GTPase EngA [Prevotella buccalis ATCC 35310] Length = 437 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G NAGKSSL NA +D IVT+I GTTRD + D G+ + DTAGIR Sbjct: 177 RFAVVGRPNAGKSSLINAFIGEDRHIVTEIAGTTRDSIYTRFDKFGFDFYLVDTAGIRRK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E + R+ +EN+D+ +L+ Sbjct: 237 SKVSEDLEFYSVMRSIRSIENSDVCILM 264 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 70/153 (45%), Gaps = 18/153 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 + I+G N GKS+LFN L + AIV+D GTTRD G + DT G + + Sbjct: 5 VAIVGRPNVGKSTLFNRLTQSRKAIVSDTAGTTRDRQYGKCSWNGREFSVVDTGGWVVNS 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD-- 330 DD+ E ++ + E ADL+L + ++ + +I + I +G K D Sbjct: 65 DDVFEDAIRRQVIVATEEADLVLFMVDVKNGLTDWDADVAQILRRTKLPVILVGNKVDNS 124 Query: 331 -LYSTYTEEY------DHLISSFTGEGLEELIN 356 Y T E Y IS+ TG G +L++ Sbjct: 125 AEYYTAAEFYRLGLGDPQCISAATGGGTGDLLD 157 >gi|122702471|emb|CAL88426.1| GTPase [Helicobacter pylori] Length = 170 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/89 (40%), Positives = 54/89 (60%), Gaps = 1/89 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310 ++ KE + +DLIL + ++ S Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYVVDVKS 97 >gi|33860948|ref|NP_892509.1| GTP-binding protein EngA [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|41017012|sp|Q7V2S6|DER_PROMP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|33639680|emb|CAE18850.1| GTP-binding protein (HSR1-related) [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 458 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/85 (41%), Positives = 51/85 (60%), Gaps = 3/85 (3%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 I+G N GKSSL NA+ + AIV+DI GTT D + + + +L KI DTAGIR ++ Sbjct: 182 IIGRPNVGKSSLLNAICGEKRAIVSDISGTTTDSIDTLIKKDSHLWKIVDTAGIRRKKNV 241 Query: 284 ---VEKEGIKRTFLEVENADLILLL 305 E GI R F ++ +D+ +L+ Sbjct: 242 KYGTEFFGINRAFKSIDRSDVCVLV 266 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 45/89 (50%), Gaps = 1/89 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 I I+G N GKS+L N L + + AIV D PG TRD + G ++ DT G + E Sbjct: 6 IAIIGRPNVGKSTLVNRLCQSNDAIVFDKPGVTRDRTYQNASWAGREFQVVDTGGLVFED 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN 309 D E + FL +E A L L + + N Sbjct: 66 DSEFLPEIRTQVFLALEEASLALFVVDGN 94 >gi|90105796|gb|ABD87833.1| Small GTP-binding protein domain [Rhodopseudomonas palustris BisB18] Length = 465 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/205 (23%), Positives = 95/205 (46%), Gaps = 32/205 (15%) Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254 D+LF ++D +S+ ++ I+G NAGKS++ N L ++ + + GTT Sbjct: 172 DVLFDEDDDVEGVSEEDFST---RPIRVAIVGRPNAGKSTMINHLLGEERLLTSAEAGTT 228 Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSK 311 RD +++++D +G +I DTAG+R I +EK + + A++++L+ + +K Sbjct: 229 RDSISVEVDYKGRQFRIFDTAGLRRRSRIEEKLEKLSVADALRAIRFAEVVVLMMDSQNK 288 Query: 312 KEISFPKNIDFI---------------FIGTKSDLYSTYTEEYDHL-----------ISS 345 E + D I +G ++ L + + DHL +S Sbjct: 289 FEEQDLRIADLIEREGRALVIAVNKWDLMGKQASLVAGLRADVDHLLPQVKGVPIVAVSG 348 Query: 346 FTGEGLEELINKIKSILSNKFKKLP 370 GEG++ L+ I+ + +++P Sbjct: 349 LMGEGIDRLMKAIEDSYAVWNRRVP 373 Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 32/60 (53%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 + I+G N GKS+LFN L + +A+V D PG TRD L I DTAG+ E Sbjct: 8 FTFAIIGRPNVGKSTLFNRLVGQKLALVDDTPGVTRDRREGQGKLGDLEFTIIDTAGLDE 67 >gi|218708645|ref|YP_002416266.1| GTP-binding protein EngA [Vibrio splendidus LGP32] gi|254783178|sp|B7VJU2|DER_VIBSL RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|218321664|emb|CAV17618.1| GTP-binding protein engA [Vibrio splendidus LGP32] Length = 493 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/98 (36%), Positives = 61/98 (62%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I + + + DTAG+R Sbjct: 207 KLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMQRDEREYVLIDTAGVRRR 266 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 +I VEK + +T +E+A+++LLL I++++ IS Sbjct: 267 KNINETVEKFSVVKTLKAIEDANVVLLL--IDARENIS 302 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD + + DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHFSEHDFIVIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE + +++ ++ AD++L + Sbjct: 65 EGVETKMAEQSLAAIDEADVVLFM 88 >gi|163782118|ref|ZP_02177117.1| GTP binding protein Era [Hydrogenivirga sp. 128-5-R1-1] gi|159882650|gb|EDP76155.1| GTP binding protein Era [Hydrogenivirga sp. 128-5-R1-1] Length = 431 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/95 (34%), Positives = 55/95 (57%), Gaps = 3/95 (3%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273 E+ G ++ + G N GKSSL NAL K+D IV+ + GTTRD + + + G + D Sbjct: 169 ELSYEGIRLTLAGRPNVGKSSLLNALLKEDRVIVSPVAGTTRDTVEVPFEWNGNKFVLVD 228 Query: 274 TAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305 TAG+R ++ VE + R+ +E++D++ L+ Sbjct: 229 TAGVRRPSNVEYGVEFFSVGRSLKAIESSDVVCLV 263 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 50/158 (31%), Positives = 81/158 (51%), Gaps = 22/158 (13%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI--R 278 ++VI+G N GKSSLFN + + AIV DIPG TRD + + G + DT G+ Sbjct: 4 RVVIIGRPNVGKSSLFNRIVGRRKAIVEDIPGVTRDSVESKAEWGGKEFLLVDTGGLVPD 63 Query: 279 ETDDIVEKEGIKRTF-LEVENADLILLLKEINS-----KKEIS---FPKNIDFIFIGTKS 329 D+I+ EG+++T EVE +D+IL + + +EI+ +P I + K Sbjct: 64 SHDEIL--EGVRKTIEREVERSDVILFVVSVKDGVTPLDEEIARLLYPFGDKVILVVNKV 121 Query: 330 D-------LYSTYTEEYDHL--ISSFTGEGLEELINKI 358 D + Y + H+ +SS G G+ EL++++ Sbjct: 122 DTDRDEEVVSEFYQLGFRHVFPVSSVHGRGVGELLDEV 159 >gi|157144555|ref|YP_001451874.1| GTP-binding protein EngA [Citrobacter koseri ATCC BAA-895] gi|166224326|sp|A8AD75|DER_CITK8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|157081760|gb|ABV11438.1| hypothetical protein CKO_00275 [Citrobacter koseri ATCC BAA-895] Length = 490 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 62/98 (63%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 K+ I+G N GKS+L N + +D +V D+PGTTRD + I ++ + + DTAG+R Sbjct: 204 KLAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRKR 263 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + D VEK + +T +E+A++++L+ I++++ IS Sbjct: 264 GKVTDAVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 299 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 D VE +++ L +E AD++L + Sbjct: 65 DGVETRMAEQSLLAIEEADVVLFM 88 >gi|86145598|ref|ZP_01063928.1| GTP-binding protein EngA [Vibrio sp. MED222] gi|85836569|gb|EAQ54695.1| GTP-binding protein EngA [Vibrio sp. MED222] Length = 493 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/98 (36%), Positives = 61/98 (62%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I + + + DTAG+R Sbjct: 207 KLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMQRDEREYVLIDTAGVRRR 266 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 +I VEK + +T +E+A+++LLL I++++ IS Sbjct: 267 KNINETVEKFSVVKTLKAIEDANVVLLL--IDARENIS 302 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD + + DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHFSEHDFIVIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE + +++ ++ AD++L + Sbjct: 65 EGVETKMAEQSLAAIDEADVVLFM 88 >gi|93005486|ref|YP_579923.1| GTP-binding protein EngA [Psychrobacter cryohalolentis K5] gi|122415786|sp|Q1QD14|DER_PSYCK RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|92393164|gb|ABE74439.1| Small GTP-binding protein domain [Psychrobacter cryohalolentis K5] Length = 480 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 34/90 (37%), Positives = 55/90 (61%), Gaps = 3/90 (3%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G K+ I+G N GKS+L N L +D +V D+PGTTRD + I EG + DTAG+R Sbjct: 177 GLKLAIIGRPNVGKSTLVNRLLGEDRVVVFDMPGTTRDSIYIPYTREGKDYVLIDTAGVR 236 Query: 279 ---ETDDIVEKEGIKRTFLEVENADLILLL 305 + D+ VEK + +T +E++++ +++ Sbjct: 237 RRGKIDEKVEKFSVIKTLQAIEDSNVTVIV 266 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 3/87 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN K A+V D+ G TRD D E + DT GI E D Sbjct: 7 VALIGRPNVGKSTLFNQFTKSRQALVADLSGLTRDRQYGDATYEDKAFIVVDTGGIGEAD 66 Query: 282 D---IVEKEGIKRTFLEVENADLILLL 305 D ++ ++++ + AD+I+ + Sbjct: 67 DGRGDIDDYMSEQSYTAIHEADIIVFV 93 >gi|259907722|ref|YP_002648078.1| GTP-binding protein EngA [Erwinia pyrifoliae Ep1/96] gi|224963344|emb|CAX54829.1| GTP-binding protein [Erwinia pyrifoliae Ep1/96] gi|283477576|emb|CAY73492.1| GTP-binding protein engA [Erwinia pyrifoliae DSM 12163] gi|310764770|gb|ADP09720.1| GTP-binding protein EngA [Erwinia sp. Ejp617] Length = 498 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 56/88 (63%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + +D +V D+PGTTRD + I ++ +G + DTAG+R+ Sbjct: 211 KLAIVGRPNVGKSTLTNRILGEDRVVVFDMPGTTRDSIYIPMERDGREYILIDTAGVRKR 270 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + VEK + +T +E+A++++L+ Sbjct: 271 GKVTETVEKFSVIKTLKAIEDANVVMLV 298 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG DT GI + Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGNE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE +++ L +E AD++L + Sbjct: 65 EGVETRMAEQSLLAIEEADVVLFM 88 >gi|212550485|ref|YP_002308802.1| GTP-binding protein EngA [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|229710725|sp|B6YQB9|DER_AZOPC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|212548723|dbj|BAG83391.1| GTP-binding protein EngA [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 437 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 52/178 (29%), Positives = 84/178 (47%), Gaps = 29/178 (16%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 + I+G N GKS+LFN L + AIV + GTTRD ++ G + I DT G + + Sbjct: 5 VAIVGRPNVGKSTLFNRLTQSHQAIVDEEEGTTRDRQYSKVEWCGQIFSIIDTGGWVLNS 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNID-------------FIFIGT 327 DDI E+E K+ + +E AD+IL L ++ I ++D I + Sbjct: 65 DDIFEEEINKQVQIAIEEADIILFLVDV-----IHGTTDLDQQIAALLRREKKLVILVSN 119 Query: 328 KSDLYSTYTEEYD---------HLISSFTGEGLEELINKIKSILSNKFKKLP-FSIPS 375 K+D Y Y + + + +S+ G G EL++ + S + K P +IP+ Sbjct: 120 KADNYKLYAQSAEFYALGLGDPYNVSAINGSGTGELLDYLISNFTKKVDNKPEITIPA 177 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 63/227 (27%), Positives = 105/227 (46%), Gaps = 17/227 (7%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI---R 278 I I+G N GKSSL NAL ++ IVT+I GTTRD + D G + DTAGI + Sbjct: 178 IAIVGKPNVGKSSLINALTNEERNIVTNIAGTTRDSIYTLYDKFGLKFYLVDTAGICKKK 237 Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEE 338 + ++ E I R +E++D+ +LL I++ + I ++I+ I K++ Sbjct: 238 KVEENSEYYSIIRAIRSIESSDICILL--IDATQCI-MAQDINIFSIIQKNEKGLIIVVN 294 Query: 339 YDHLISSFTGEGLEELINKIKSILSNKFKKLP--FSIPSHKRHLYHLSQT------VRYL 390 LI + + + N I+ + F +P FS K+ +Y + Q +R + Sbjct: 295 KWDLIQNKNPKTIYTFENAIRQ-RTAPFTDVPIIFSSAQTKKRIYKILQVAKEVYDIRQI 353 Query: 391 EMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFC 437 ++ + L IIA+ ++ GK+ V QL + I F Sbjct: 354 KIPTSQLNRILLPIIAKT--PPPINKGKVVRIKYVTQLTNTIIPSFV 398 >gi|149369730|ref|ZP_01889582.1| GTP-binding protein EngA [unidentified eubacterium SCB49] gi|149357157|gb|EDM45712.1| GTP-binding protein EngA [unidentified eubacterium SCB49] Length = 433 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G NAGKSS NAL +D IVTDI GTTRD + + G+ + DTAGIR Sbjct: 175 RFAVVGRPNAGKSSFINALIGEDRYIVTDIAGTTRDSIDTRYNRFGFEFNLVDTAGIRRK 234 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E + R+ +E++D+I+L+ Sbjct: 235 AKVKEDLEFYSVMRSVRAIEHSDVIILV 262 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 + I+G N GKS+ FN + ++ AIV + G TRD D G + DT G ++ + Sbjct: 4 VAIVGRPNVGKSTFFNRMIQRREAIVDAVSGVTRDRHYGKSDWNGREFSLIDTGGYVKGS 63 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 DD+ E E K+ L ++ AD I+ + Sbjct: 64 DDVFETEIDKQVELAIDEADAIIFM 88 >gi|313901830|ref|ZP_07835252.1| ribosome-associated GTPase EngA [Thermaerobacter subterraneus DSM 13965] gi|313467912|gb|EFR63404.1| ribosome-associated GTPase EngA [Thermaerobacter subterraneus DSM 13965] Length = 454 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 49/84 (58%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN + ++ +AI D+PG TRD L D D G + DT G+ E D Sbjct: 5 VAIVGRPNVGKSTLFNRIIERRLAIEDDVPGVTRDRLYADTDWAGREFTLVDTGGLAEGD 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 D + + ++ V ADL++++ Sbjct: 65 DPLTVQVRRQVEAAVREADLLIMV 88 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 52/199 (26%), Positives = 84/199 (42%), Gaps = 34/199 (17%) Query: 201 NDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260 D G+ GEI + I+G N GKSSL N L ++ +V+DIPGTTRD + + Sbjct: 171 GDAGDRGPWGETGEI-----AVAIVGRPNVGKSSLVNRLLGEERVVVSDIPGTTRDAVDV 225 Query: 261 DLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENAD---LILLLKEINSKKEI 314 + + DTAG+R D VE RT + AD L+L ++ ++++ Sbjct: 226 LWRRGERVFRFIDTAGLRRKSRVKDDVEFYSTLRTQRALARADVACLVLDARDPATEQDK 285 Query: 315 SFPKNI------------DFIFIGTKSDLYSTYTE----EYDHL-------ISSFTGEGL 351 I + + D Y E EYD L +S+ TG+ + Sbjct: 286 RIAGMILEEGKACVLAVNKWDLVAKGPDTADQYREALYREYDFLQFAPVVFLSALTGQRV 345 Query: 352 EELINKIKSILSNKFKKLP 370 + L+ + N +++P Sbjct: 346 DRLVEVLAGAAENHRRRVP 364 >gi|256370714|ref|YP_003108539.1| GTP-binding protein EngA [Candidatus Sulcia muelleri SMDSEM] gi|256009506|gb|ACU52866.1| GTP-binding protein EngA [Candidatus Sulcia muelleri SMDSEM] Length = 438 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/88 (40%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N L KK+ IV++I GTTRD L + G + DTAGIR+ Sbjct: 181 KLAIVGRPNVGKSTLINTLLKKNQNIVSNISGTTRDSLEVFYKKFGIECILVDTAGIRKK 240 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + I +E + R ++N+D+ LLL Sbjct: 241 NKIKENIEFYSVMRAIKSIKNSDVCLLL 268 Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 + I+G SN GKS+LFN L +IV G TRD + G + DT G + Sbjct: 5 VSIVGRSNVGKSTLFNRLIGYKKSIVNSKSGVTRDRNYGFCNWNGIDFCLIDTGGYTNKF 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 ++I +K+ ++ F +E +DLIL L Sbjct: 65 NNIFDKKICEQFFFALEESDLILFL 89 >gi|213649667|ref|ZP_03379720.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 136 Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 32/84 (38%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 D VE +++ L +E AD++L + Sbjct: 65 DGVETRMAEQSLLAIEEADVVLFM 88 >gi|88802177|ref|ZP_01117705.1| GTP-binding protein EngA [Polaribacter irgensii 23-P] gi|88782835|gb|EAR14012.1| GTP-binding protein EngA [Polaribacter irgensii 23-P] Length = 436 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G NAGKSS NAL KD IVT+I GTTRD + + G+ + DTAGIR+ Sbjct: 178 RFAVVGRPNAGKSSFINALIGKDRNIVTNIAGTTRDSIDTKYNRFGFDFNLVDTAGIRKK 237 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E + R +E AD+I+L+ Sbjct: 238 SKVKEDLEFYSVMRAVRSIEYADVIILV 265 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 1/88 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFN L ++ AIV + G TRD D G + DT G + Sbjct: 5 VAIVGRPNVGKSTLFNRLVQRRDAIVDSVSGVTRDRHYGKSDWNGKEFSVIDTGGYSIGS 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308 DDI E+E K+ L +E AD+I+ + ++ Sbjct: 65 DDIFEEEIRKQVTLAIEEADIIVFVVDV 92 >gi|121604778|ref|YP_982107.1| GTP-binding protein EngA [Polaromonas naphthalenivorans CJ2] gi|166225835|sp|A1VNF8|DER_POLNA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|120593747|gb|ABM37186.1| small GTP-binding protein [Polaromonas naphthalenivorans CJ2] Length = 445 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ + G N GKS+L N ++ + D+PGTTRD +++ + G ++ DTAG+R Sbjct: 181 KLAVAGRPNVGKSTLINTWLGEERLVAFDLPGTTRDAISVPFEHAGQKFELIDTAGLRRK 240 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +EK + +T +ENA+++LLL Sbjct: 241 GKVFEAIEKFSVVKTLQAIENANVVLLL 268 Score = 43.5 bits (101), Expect = 0.063, Method: Compositional matrix adjust. Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 5/96 (5%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L K AIV D G TRD + L + + DT G E D Sbjct: 5 IALVGRPNVGKSTLFNRLTKTRDAIVADFAGLTRDRHYGNGKLGPHEYIVIDTGGF-EPD 63 Query: 282 DI--VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + + KE ++T V +D+++ + ++++ IS Sbjct: 64 AVTGIYKEMARQTRQAVAESDVVIFV--VDARAGIS 97 >gi|331269697|ref|YP_004396189.1| small GTP-binding protein [Clostridium botulinum BKT015925] gi|329126247|gb|AEB76192.1| small GTP-binding protein [Clostridium botulinum BKT015925] Length = 438 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/85 (37%), Positives = 51/85 (60%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFN LA K +AIV D+PG TRD + + I DT GI E+ Sbjct: 6 VAIVGRPNVGKSTLFNKLAGKRIAIVDDMPGVTRDRIYAQAEWLNNKFTIIDTGGIEPES 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 +D++ + ++ + +E AD++L + Sbjct: 66 EDVIVAQMRRQAQMAIEMADVVLFI 90 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I ++G N GKSSL N + ++ IV++IPGTTRD + ++ E + DTAG+R Sbjct: 178 RIAMVGRPNVGKSSLINRILGEEKHIVSNIPGTTRDSVDSYIEREEGKFALIDTAGLRRK 237 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 I VE+ RT +ENAD+ +L+ Sbjct: 238 SKIKEQVERYSAVRTIASIENADVCILM 265 >gi|269797893|ref|YP_003311793.1| small GTP-binding protein [Veillonella parvula DSM 2008] gi|269094522|gb|ACZ24513.1| small GTP-binding protein [Veillonella parvula DSM 2008] Length = 444 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/87 (40%), Positives = 51/87 (58%), Gaps = 3/87 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKSSL NAL +D IV+D+ GTTRD + EG + DTAG+R Sbjct: 181 VAVIGRPNVGKSSLTNALLGQDRVIVSDVAGTTRDSIDTYWTHEGQKFVLIDTAGMRRKS 240 Query: 282 DI---VEKEGIKRTFLEVENADLILLL 305 I VE+ I R+ V+ AD+++L+ Sbjct: 241 KIEEAVERYSIVRSLRSVDRADIVVLV 267 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 3/87 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--- 278 + ++G N GKS+LFNA+ K ++IV DIPG TRD + D + + DT GI Sbjct: 6 VAVVGRPNVGKSTLFNAIVNKRISIVEDIPGVTRDRIYFDAEWLNREFTMIDTGGIEFIT 65 Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL 305 E ++ K + L +E AD+IL + Sbjct: 66 ENSHVIPKMMRLQAELAIEEADVILFV 92 >gi|148559467|ref|YP_001258406.1| GTP-binding protein EngA [Brucella ovis ATCC 25840] gi|166224311|sp|A5VNV9|DER_BRUO2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|148370724|gb|ABQ60703.1| GTP-binding protein [Brucella ovis ATCC 25840] Length = 483 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 79/165 (47%), Gaps = 24/165 (14%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G+ + I+G N GKS+LFN L + +A+V D+PG TRD D L ++ DTAG+ Sbjct: 2 GFTLAIVGRPNVGKSTLFNRLVGRKLALVDDLPGVTRDRRIHDAKLYDLKFQVIDTAGLE 61 Query: 279 E-TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF-----------IFIG 326 E +D +E +T + AD +L + I++K I+ P + F + + Sbjct: 62 EAANDSLEARMRAQTEAAISEADAVLFV--IDAKAGIT-PADSTFAEAVRRSGKPVVLVA 118 Query: 327 TKSDLYSTYTEEYDHL---------ISSFTGEGLEELINKIKSIL 362 K++ + YD IS+ G+G+ +L + I +L Sbjct: 119 NKAEARGSEAGMYDAFQLGLGEPCPISAKHGQGMPDLRDAIVELL 163 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 38/66 (57%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I I+G NAGKS+L N + +D + G TRD ++ D + G +K+ DTAG+R Sbjct: 213 RIAIVGRPNAGKSTLINTMLGEDRLLTGPEAGITRDSISADWEWHGRKIKLFDTAGMRRK 272 Query: 281 DDIVEK 286 + EK Sbjct: 273 ARVQEK 278 >gi|28199496|ref|NP_779810.1| GTP-binding protein EngA [Xylella fastidiosa Temecula1] gi|182682229|ref|YP_001830389.1| GTP-binding protein EngA [Xylella fastidiosa M23] gi|32129520|sp|Q87B41|DER_XYLFT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|238691082|sp|B2I7V0|DER_XYLF2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|28057611|gb|AAO29459.1| GTP-binding protein [Xylella fastidiosa Temecula1] gi|182632339|gb|ACB93115.1| small GTP-binding protein [Xylella fastidiosa M23] gi|307578503|gb|ADN62472.1| GTP-binding protein EngA [Xylella fastidiosa subsp. fastidiosa GB514] Length = 465 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/87 (37%), Positives = 53/87 (60%), Gaps = 3/87 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--- 278 I +G N GKS+L N L ++ IV+D+PGTTRD +T+DL+ + ++ DTAG+R Sbjct: 181 IAFVGRPNVGKSTLVNRLLGEERMIVSDVPGTTRDSITVDLERDELRYRLVDTAGLRRKS 240 Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL 305 + ++ VEK +T +E + +LL Sbjct: 241 KVEEAVEKFSAFKTLQAIEQCQVAVLL 267 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 46/179 (25%), Positives = 81/179 (45%), Gaps = 22/179 (12%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280 + ++G N GKS+LFNAL A+V D PG TRD ++G L + DT G+ Sbjct: 5 VALVGRPNVGKSTLFNALTLTRDALVHDQPGVTRDRHYGVCRIDGQPLFAVVDTGGMVGK 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK------------KEISFPKNIDFIFIGTK 328 +D + ++ L V AD++L + + +++S P + I Sbjct: 65 EDGLAGATARQARLAVAEADVVLFVVNVREGASALDDDILAWLRKLSQPTLLVINKIDGV 124 Query: 329 SDLYSTYTEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380 SD +T E+ H +S+ +GL++LI ++ + L + F+ S + H+ Sbjct: 125 SD--TTVHSEFAHYGFSDVVPVSAAHRQGLDDLIEQVLAWLPERSIGEAFNEDSERIHI 181 >gi|118474391|ref|YP_892485.1| GTP-binding protein EngA [Campylobacter fetus subsp. fetus 82-40] gi|166224321|sp|A0RQK2|DER_CAMFF RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|118413617|gb|ABK82037.1| GTP-binding protein EngA [Campylobacter fetus subsp. fetus 82-40] Length = 463 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/111 (35%), Positives = 67/111 (60%), Gaps = 6/111 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI+++G N GKSSLFN LAK+ +AI +D+ GTTRD ++ ++ + D+ G+ ++ Sbjct: 3 KIILVGRPNVGKSSLFNRLAKQRIAITSDVSGTTRDTNKAEIFIDDKNCILIDSGGLDDS 62 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDL 331 +++ + I T E +NAD+I+ + ++ K +FP ID F S+L Sbjct: 63 NELFKNVKIN-TLNEAKNADIIVFM--VDGK---NFPDEIDKRFFYELSNL 107 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 37/87 (42%), Positives = 52/87 (59%), Gaps = 2/87 (2%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI I+G N GKSSL NAL K+D ++V+ I GTT D + E + + DTAGIR+ Sbjct: 199 KIGIIGRVNVGKSSLLNALVKEDRSVVSKIAGTTIDPVNESYVYEDRVFEFVDTAGIRKR 258 Query: 281 DDI--VEKEGIKRTFLEVENADLILLL 305 I +E+ + RT +E AD+ LL+ Sbjct: 259 GKIEGIERLALHRTEKILEEADIALLV 285 >gi|303236880|ref|ZP_07323459.1| ribosome-associated GTPase EngA [Prevotella disiens FB035-09AN] gi|302483048|gb|EFL46064.1| ribosome-associated GTPase EngA [Prevotella disiens FB035-09AN] Length = 437 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G NAGKSSL NA +D IVT+I GTTRD + + G+ + DTAGIR Sbjct: 177 RFAVVGRPNAGKSSLINAFIGEDRNIVTEIAGTTRDSIYTRYNKFGFDFYLVDTAGIRRK 236 Query: 281 DDIVEK---EGIKRTFLEVENADLILLL 305 + + E + R+ +EN+D+ +L+ Sbjct: 237 NKVTEDLEFYSVMRSIRSIENSDVCILM 264 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/85 (40%), Positives = 44/85 (51%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 + I+G N GKS+LFN L + AIV+D GTTRD G I DT G + + Sbjct: 5 VAIVGRPNVGKSTLFNRLTQSRRAIVSDTAGTTRDRQYGKCQWNGREFSIVDTGGWVVNS 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 DDI E K+ + E AD +L L Sbjct: 65 DDIFEDAIRKQVLVATEEADFVLFL 89 >gi|242240151|ref|YP_002988332.1| GTP-binding protein EngA [Dickeya dadantii Ech703] gi|242132208|gb|ACS86510.1| small GTP-binding protein [Dickeya dadantii Ech703] Length = 494 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/98 (36%), Positives = 62/98 (63%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + +D +V D+PGTTRD + I ++ + + DTAG+R+ Sbjct: 208 KLAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMERDEREYILIDTAGVRKR 267 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D VEK + +T +E+A+++LL+ I++++ IS Sbjct: 268 GKITDAVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 303 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 49/84 (58%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG+ I DT GI ++ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGHEFIIIDTGGIDGSE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 D VE +++ +E AD++L L Sbjct: 65 DGVETRMAEQSLQAIEEADIVLFL 88 >gi|162136030|ref|YP_532152.2| GTP-binding protein EngA [Rhodopseudomonas palustris BisB18] Length = 460 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/205 (23%), Positives = 95/205 (46%), Gaps = 32/205 (15%) Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254 D+LF ++D +S+ ++ I+G NAGKS++ N L ++ + + GTT Sbjct: 167 DVLFDEDDDVEGVSEEDFST---RPIRVAIVGRPNAGKSTMINHLLGEERLLTSAEAGTT 223 Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSK 311 RD +++++D +G +I DTAG+R I +EK + + A++++L+ + +K Sbjct: 224 RDSISVEVDYKGRQFRIFDTAGLRRRSRIEEKLEKLSVADALRAIRFAEVVVLMMDSQNK 283 Query: 312 KEISFPKNIDFI---------------FIGTKSDLYSTYTEEYDHL-----------ISS 345 E + D I +G ++ L + + DHL +S Sbjct: 284 FEEQDLRIADLIEREGRALVIAVNKWDLMGKQASLVAGLRADVDHLLPQVKGVPIVAVSG 343 Query: 346 FTGEGLEELINKIKSILSNKFKKLP 370 GEG++ L+ I+ + +++P Sbjct: 344 LMGEGIDRLMKAIEDSYAVWNRRVP 368 Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 32/60 (53%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 + I+G N GKS+LFN L + +A+V D PG TRD L I DTAG+ E Sbjct: 3 FTFAIIGRPNVGKSTLFNRLVGQKLALVDDTPGVTRDRREGQGKLGDLEFTIIDTAGLDE 62 >gi|317504953|ref|ZP_07962902.1| ribosome-associated GTPase EngA [Prevotella salivae DSM 15606] gi|315663945|gb|EFV03663.1| ribosome-associated GTPase EngA [Prevotella salivae DSM 15606] Length = 437 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G NAGKSS+ NA +D IVT+I GTTRD + D G+ + DTAGIR Sbjct: 177 RFAVVGRPNAGKSSIINAFIGEDRNIVTEIAGTTRDSIYTRYDKFGFDFYLVDTAGIRRK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + + +E + R+ +EN+D+ +L+ Sbjct: 237 NKVSEDLEFYSVMRSIRAIENSDVCILM 264 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 72/155 (46%), Gaps = 18/155 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 + I+G N GKS+LFN L + AIV+D GTTRD I DT G + + Sbjct: 5 VAIVGRPNVGKSTLFNRLTQSRRAIVSDTAGTTRDRQYGKCSWNSKEFSIVDTGGWVVNS 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISF---PKNIDFIFIGTKSDLY 332 DDI E ++ + E ADL+L L ++++ ++++ + I + K D Sbjct: 65 DDIFEDAIRRQVLVATEEADLVLFLVDVSTGVTDWDEDVAMILRRAKLPVILVANKVDNN 124 Query: 333 STYTEEYD---------HLISSFTGEGLEELINKI 358 S Y E + IS+ TG G +L++ I Sbjct: 125 SEYYEAAEFYKLGLGEPQCISAATGGGTGDLLDLI 159 >gi|261884860|ref|ZP_06008899.1| GTP-binding protein EngA [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 153 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/111 (35%), Positives = 67/111 (60%), Gaps = 6/111 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI+++G N GKSSLFN LAK+ +AI +D+ GTTRD ++ ++ + D+ G+ ++ Sbjct: 3 KIILVGRPNVGKSSLFNRLAKQRIAITSDVSGTTRDTNKAEIFIDDKNCILIDSGGLDDS 62 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDL 331 +++ + I T E +NAD+I+ + ++ K +FP ID F S+L Sbjct: 63 NELFKNVKIN-TLNEAKNADIIVFM--VDGK---NFPDEIDKRFFYELSNL 107 >gi|261820577|ref|YP_003258683.1| GTP-binding protein EngA [Pectobacterium wasabiae WPP163] gi|261604590|gb|ACX87076.1| ribosome-associated GTPase EngA [Pectobacterium wasabiae WPP163] Length = 495 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 49/84 (58%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG+ I DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGHEFIIVDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 D VE ++ + +E AD++L + Sbjct: 65 DGVETRMAGQSLVAIEEADIVLFM 88 Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/98 (34%), Positives = 61/98 (62%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I + + + DTAG+R+ Sbjct: 209 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMVRDEREYILIDTAGVRKR 268 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + VEK + +T +E+A+++LL+ I++++ IS Sbjct: 269 GKVTETVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 304 >gi|312143158|ref|YP_003994604.1| small GTP-binding protein [Halanaerobium sp. 'sapolanicus'] gi|311903809|gb|ADQ14250.1| small GTP-binding protein [Halanaerobium sp. 'sapolanicus'] Length = 409 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 50/162 (30%), Positives = 86/162 (53%), Gaps = 24/162 (14%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276 N I + G NAGKSSL N+L + +A+V+++PGTT D + ++L V + DTAG Sbjct: 8 NRPHIAVFGRRNAGKSSLINSLCNQKLALVSEVPGTTTDPVYKAMELLPLGPVMMIDTAG 67 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL------------KEINSKKEISFP-----KN 319 I ++ D+ E +K+++ + DL +L+ K +++ + + P Sbjct: 68 IDDSGDLGEMR-VKKSYEIIRKTDLAVLVIDNQVEFGKYEQKLLDNFNKTNTPVVAVINK 126 Query: 320 IDFIFIGTKSDLYSTYTEEYDH---LISSFTGEGLEELINKI 358 ID F K+++ EYD L+S+ +G+G+EEL +KI Sbjct: 127 IDLAF--DKTEVVDKLQREYDLKPILLSAESGQGIEELRDKI 166 >gi|148238904|ref|YP_001224291.1| GTP-binding protein EngA [Synechococcus sp. WH 7803] gi|166225928|sp|A5GJ79|DER_SYNPW RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|147847443|emb|CAK22994.1| GTP-binding protein engA [Synechococcus sp. WH 7803] Length = 455 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSL NA+ + AIV+ I GTTRD + L E ++ DTAGIR Sbjct: 179 QLAIIGRPNVGKSSLLNAICGEQRAIVSPIRGTTRDTIDTSLVRENRPWRLVDTAGIRRR 238 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + E GI R+F +E +D+ +L+ Sbjct: 239 RSVNYGPEFFGINRSFKAIERSDVCVLV 266 Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 30/61 (49%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+L N L AIV D PG TRD D K+ DT G+ D Sbjct: 6 VAIIGRPNVGKSTLVNRLCHSREAIVHDEPGVTRDRTYQDGYWGDRDFKVVDTGGLVFDD 65 Query: 282 D 282 D Sbjct: 66 D 66 >gi|298246134|ref|ZP_06969940.1| ribosome-associated GTPase EngA [Ktedonobacter racemifer DSM 44963] gi|297553615|gb|EFH87480.1| ribosome-associated GTPase EngA [Ktedonobacter racemifer DSM 44963] Length = 474 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/88 (40%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI--- 277 +I I+G N GKSSL NA+ + +IV+DIPGTTRD + +L+ +K+ DTAGI Sbjct: 192 RIAIVGRPNVGKSSLLNAILGVNRSIVSDIPGTTRDAIDTELEFGDQKIKLVDTAGIRRR 251 Query: 278 RETDDIVEKEGIKRTFLEVENADLILLL 305 VEK + R+ +E D+ L+L Sbjct: 252 GRVGVGVEKYSVLRSTRAIERCDVALML 279 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 15/103 (14%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--- 278 + I+G N GKS+ FN + + VAIV D+PGTTRD L D D G + DT G+ Sbjct: 5 VAIVGRPNVGKSTFFNRMIGERVAIVEDMPGTTRDRLYGDADWNGREFTLIDTGGLELGT 64 Query: 279 -----------ETDDIVEKEGIKRTFLEVENADLILLLKEINS 310 ++ DI++ + + L +E AD+I+ + + S Sbjct: 65 GIPVGQVGLTGQSGDIMDHV-MSQAQLAIEEADVIVFMVDARS 106 >gi|292806682|gb|ADE42471.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L GY V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIVLNGYEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702597|emb|CAL88488.1| GTPase [Helicobacter pylori] Length = 170 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 53/158 (33%), Positives = 78/158 (49%), Gaps = 18/158 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LAK+ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRRIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEIS-----FPKNIDFIFIGTKSD--- 330 ++ KE + +DLIL + K I S ++I F N + + K D Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKTNPNCFLVINKIDNDK 128 Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362 +S++ IS G+ LI+ I S+L Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAILSVL 166 >gi|56476106|ref|YP_157695.1| GTP-binding protein EngA [Aromatoleum aromaticum EbN1] gi|81821192|sp|Q5P7B7|DER_AZOSE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|56312149|emb|CAI06794.1| GTP-binding protein engA [Aromatoleum aromaticum EbN1] Length = 442 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 59/98 (60%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I I+G N GKS+ N+L ++ I D+PGTTRD + I + +G + DTAG+R Sbjct: 178 RIAIVGRPNVGKSTFVNSLLGEERVIAFDMPGTTRDAIAIPFERDGRHYTLIDTAGLRRR 237 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + VEK + +T +E A++++L+ +++ ++IS Sbjct: 238 GKVFEAVEKFSVIKTLQAIEQANVVVLV--LDASQDIS 273 Score = 43.9 bits (102), Expect = 0.048, Method: Compositional matrix adjust. Identities = 34/73 (46%), Positives = 39/73 (53%), Gaps = 14/73 (19%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV-----LTIDLDLEGYLVKISDTAG 276 IV++G N GKS+LFN L K A+V D PG TRD D D YLV DTAG Sbjct: 5 IVLVGRPNVGKSTLFNRLTKTRDALVADQPGLTRDRHYGIGRVGDRD---YLV--VDTAG 59 Query: 277 IRETDDIVEKEGI 289 D V K+GI Sbjct: 60 F----DPVAKDGI 68 >gi|253682586|ref|ZP_04863383.1| ribosome-associated GTPase EngA [Clostridium botulinum D str. 1873] gi|253562298|gb|EES91750.1| ribosome-associated GTPase EngA [Clostridium botulinum D str. 1873] Length = 438 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/85 (37%), Positives = 51/85 (60%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFN LA K +AIV D+PG TRD + + I DT GI E+ Sbjct: 6 VAIVGRPNVGKSTLFNKLAGKRIAIVDDMPGVTRDRIYAQAEWLNNKFTIIDTGGIEPES 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 +D++ + ++ + +E AD++L + Sbjct: 66 EDVIVAQMRRQAQMAIEMADVVLFI 90 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I ++G N GKSSL N + ++ IV++IPGTTRD + ++ E + DTAG+R Sbjct: 178 RIAMVGRPNVGKSSLINRILGEEKHIVSNIPGTTRDSVDSYIEREEGKFALIDTAGLRRK 237 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 I VE+ RT +ENAD+ +L+ Sbjct: 238 SKIKEQVERYSAVRTIASIENADVCILM 265 >gi|227328671|ref|ZP_03832695.1| GTP-binding protein EngA [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 495 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 49/84 (58%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG+ I DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGHEFIIVDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 D VE ++ + +E AD++L + Sbjct: 65 DGVETRMAGQSLVAIEEADIVLFM 88 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 34/98 (34%), Positives = 61/98 (62%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I + + + DTAG+R+ Sbjct: 209 KLAIVGRPNVGKSTLTNRILGEERVVVFDMPGTTRDSIYIPMVRDEREYVLIDTAGVRKR 268 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + VEK + +T +E+A+++LL+ I++++ IS Sbjct: 269 GKVTETVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 304 >gi|73856514|gb|AAZ89221.1| putative GTP-binding factor [Shigella sonnei Ss046] Length = 503 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 34/98 (34%), Positives = 62/98 (63%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G + DTAG+R+ Sbjct: 217 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 276 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D VEK + +T +E+ ++++L+ I++++ IS Sbjct: 277 GKITDAVEKFSVIKTLQAIEDTNVVMLV--IDAREGIS 312 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG DT GI T+ Sbjct: 18 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 77 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 D VE +++ L +E AD++L + Sbjct: 78 DGVETRMAEQSLLAIEEADVVLFM 101 >gi|328952198|ref|YP_004369532.1| GTP-binding protein engA [Desulfobacca acetoxidans DSM 11109] gi|328452522|gb|AEB08351.1| GTP-binding protein engA [Desulfobacca acetoxidans DSM 11109] Length = 449 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/94 (34%), Positives = 54/94 (57%), Gaps = 2/94 (2%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G +N GKS+LFN L ++ A+V D PG TRD L D+ E + + DT G +T+ Sbjct: 5 VALIGRTNVGKSTLFNRLTRQSRALVDDQPGVTRDRLYGDVTWEDHAFLLIDTGGFGDTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D + ++ L ADL+L + ++ ++EI Sbjct: 65 DALSSRVRQQAELAAGEADLVLFM--VDGRQEIQ 96 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 3/90 (3%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G ++ +LG N GKSS N + ++ IV+D PGTTRD + L + + DTAGIR Sbjct: 174 GIRVAVLGRPNVGKSSFINRVLGEERLIVSDTPGTTRDAIDAPLIWDNRPYVLIDTAGIR 233 Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLL 305 I +E+ I + ++ A+++LLL Sbjct: 234 RRSRIHQNLERGMIWQALRALQRAEVVLLL 263 >gi|315300482|gb|EFU59711.1| ribosome-associated GTPase EngA [Escherichia coli MS 16-3] Length = 499 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 34/98 (34%), Positives = 63/98 (64%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTR+ + I ++ +G + DTAG+R+ Sbjct: 213 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRESIYIPMERDGREYVLIDTAGVRKR 272 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D VEK + +T +E+A++++L+ I++++ IS Sbjct: 273 GKITDAVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 308 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG DT GI T+ Sbjct: 14 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 73 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 D VE +++ L +E AD++L + Sbjct: 74 DGVETRMAEQSLLAIEEADVVLFM 97 >gi|224367274|ref|YP_002601437.1| GTPase [Desulfobacterium autotrophicum HRM2] gi|223689990|gb|ACN13273.1| GTPase [Desulfobacterium autotrophicum HRM2] Length = 405 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 50/151 (33%), Positives = 81/151 (53%), Gaps = 19/151 (12%) Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266 +S L E+ R IV+ G NAGKSSL N L +KD+AI ++ PGTT D +T ++L Sbjct: 1 MSTPPLAEMTR----IVLAGVRNAGKSSLMNNLFQKDIAITSETPGTTTDPVTRKIELGK 56 Query: 267 Y-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK-----EINSKKEIS---FP 317 + I+DTAG+ + + E+ I +T +E ADLIL + ++KE+ Sbjct: 57 LGMCAITDTAGLDDAGALGEQR-ILKTRERLETADLILFVSPGDKAPTPAEKELKNWLLE 115 Query: 318 KNIDFIFIGTKSDL-----YSTYTEEYDHLI 343 KN+ +I + + DL T+ E+ + ++ Sbjct: 116 KNLPWIGVISFKDLPRHEEKKTFFEQQEQIV 146 >gi|161986480|ref|YP_311456.2| GTP-binding protein EngA [Shigella sonnei Ss046] gi|323169045|gb|EFZ54722.1| small GTP-binding domain protein [Shigella sonnei 53G] Length = 490 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 34/98 (34%), Positives = 62/98 (63%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G + DTAG+R+ Sbjct: 204 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKR 263 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D VEK + +T +E+ ++++L+ I++++ IS Sbjct: 264 GKITDAVEKFSVIKTLQAIEDTNVVMLV--IDAREGIS 299 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 D VE +++ L +E AD++L + Sbjct: 65 DGVETRMAEQSLLAIEEADVVLFM 88 >gi|332880020|ref|ZP_08447704.1| ribosome biogenesis GTPase Der [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332682016|gb|EGJ54929.1| ribosome biogenesis GTPase Der [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 434 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G NAGKSS NAL +D IVTDI GTTRD + + G+ + DTAGIR Sbjct: 176 RFAVVGRPNAGKSSFINALIGEDRYIVTDIAGTTRDAIDTRYNRFGFEFNLVDTAGIRRK 235 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E + R+ +E++D+ +L+ Sbjct: 236 SKVKEDLEFYSVMRSIRAIEHSDVCILM 263 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 49/178 (27%), Positives = 78/178 (43%), Gaps = 32/178 (17%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 + I+G N GKS+ FN L K+ AIV + G TRD D G + DT G + Sbjct: 5 VAIVGRPNVGKSTFFNRLIKRREAIVDAVSGVTRDRHYGKTDWNGVEFSVIDTGGYLAGG 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI----------------NSKKEISFPKNIDFIF 324 DD +KE K+ L ++ AD I+ + + SKK + F+ Sbjct: 65 DDTFQKEIDKQVNLAIDEADAIIFMVNVEDGLTGMDESVAALLRKSKKPV-------FVV 117 Query: 325 IGT------KSDLYSTYTEEYDHL--ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374 + + D + Y ++HL ISS G G +L++++ L K +K ++P Sbjct: 118 VNKVDSNNRRDDAHEFYALGFEHLFSISSINGSGTGDLLDELVKNLPEKEQKEEENLP 175 >gi|253578391|ref|ZP_04855663.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251850709|gb|EES78667.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 441 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I I+G N GKSSL N L +D IV+DI GTTRD + + +G DTAG+R Sbjct: 179 RIAIVGKPNVGKSSLVNKLLGEDRVIVSDIAGTTRDAVDTRVKWQGKDYIFIDTAGLRRK 238 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E+ + RT VE AD+++++ Sbjct: 239 GKVKEEIERYSVIRTVTAVERADVVIVM 266 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 54/90 (60%), Gaps = 1/90 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFNALA + ++IV D PG TRD + D+ + DT GI ++ Sbjct: 6 VAIVGRPNVGKSTLFNALAGEKISIVKDTPGVTRDRIYADVTWLDKTFTMIDTGGIEPDS 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310 DI+ + ++ + ++ AD+I+ + +++ Sbjct: 66 SDIILSQMREQAQIAIDTADVIIFITDVHQ 95 >gi|302874737|ref|YP_003843370.1| ribosome-associated GTPase EngA [Clostridium cellulovorans 743B] gi|307690648|ref|ZP_07633094.1| GTP-binding protein EngA [Clostridium cellulovorans 743B] gi|302577594|gb|ADL51606.1| ribosome-associated GTPase EngA [Clostridium cellulovorans 743B] Length = 438 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/85 (38%), Positives = 51/85 (60%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFN LA K +AIV D PG TRD + + G I DT GI ++ Sbjct: 6 VAIVGRPNVGKSTLFNKLAGKRIAIVEDKPGVTRDRIYASSEWVGQEFTIIDTGGIEPKS 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 DDI+ + ++ + +E A++I+ + Sbjct: 66 DDIILAQMRRQALIAIETANVIIFI 90 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI ++G N GKSSL N L ++ IV++IPGTTRD + L+ E + DTAG+R Sbjct: 178 KIAMIGKPNVGKSSLINKLLGEERNIVSNIPGTTRDAIDSPLETEIGKFMLIDTAGLRRK 237 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E+ + RT +E AD+ +L+ Sbjct: 238 SKVKEEIERYSVIRTLTAIERADVCILM 265 >gi|122702839|emb|CAL88609.1| GTPase [Helicobacter pylori] Length = 170 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/84 (42%), Positives = 51/84 (60%), Gaps = 1/84 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LAK+ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ KE + +DLIL + Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYI 92 >gi|312173198|emb|CBX81453.1| GTP-binding protein engA [Erwinia amylovora ATCC BAA-2158] Length = 499 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 56/88 (63%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + +D +V D+PGTTRD + I ++ +G + DTAG+R+ Sbjct: 212 KLAIVGRPNVGKSTLTNRILGEDRVVVFDMPGTTRDSIYIPMERDGREYILIDTAGVRKR 271 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + VEK + +T +E+A++++L+ Sbjct: 272 GKVTETVEKFSVIKTLKAIEDANVVMLV 299 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG DT GI + Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGNE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE +++ L +E AD++L + Sbjct: 65 EGVETRMAEQSLLAIEEADVVLFM 88 >gi|227112682|ref|ZP_03826338.1| GTP-binding protein EngA [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 495 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 49/84 (58%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG+ I DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGHEFIIVDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 D VE ++ + +E AD++L + Sbjct: 65 DGVETRMAGQSLVAIEEADIVLFM 88 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 34/98 (34%), Positives = 61/98 (62%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I + + + DTAG+R+ Sbjct: 209 KLAIVGRPNVGKSTLTNRILGEERVVVFDMPGTTRDSIYIPMVRDEREYVLIDTAGVRKR 268 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + VEK + +T +E+A+++LL+ I++++ IS Sbjct: 269 GKVTETVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 304 >gi|292489043|ref|YP_003531930.1| GTP-binding protein engA [Erwinia amylovora CFBP1430] gi|292900172|ref|YP_003539541.1| GTP-binding protein [Erwinia amylovora ATCC 49946] gi|291200020|emb|CBJ47145.1| GTP-binding protein [Erwinia amylovora ATCC 49946] gi|291554477|emb|CBA22001.1| GTP-binding protein engA [Erwinia amylovora CFBP1430] Length = 499 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 56/88 (63%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + +D +V D+PGTTRD + I ++ +G + DTAG+R+ Sbjct: 212 KLAIVGRPNVGKSTLTNRILGEDRVVVFDMPGTTRDSIYIPMERDGREYILIDTAGVRKR 271 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + VEK + +T +E+A++++L+ Sbjct: 272 GKVTETVEKFSVIKTLKAIEDANVVMLV 299 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG DT GI + Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGNE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE +++ L +E AD++L + Sbjct: 65 EGVETRMAEQSLLAIEEADVVLFM 88 >gi|290475995|ref|YP_003468891.1| GTP-binding protein, essential for cell growth [Xenorhabdus bovienii SS-2004] gi|289175324|emb|CBJ82127.1| GTP-binding protein, essential for cell growth [Xenorhabdus bovienii SS-2004] Length = 496 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 63/98 (64%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G + DTAG+R+ Sbjct: 211 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYILIDTAGVRKR 270 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + VEK + +T +E+A+++LL+ +++++ +S Sbjct: 271 GKVTETVEKFSVIKTLQAIEDANVVLLI--VDAREGVS 306 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 50/89 (56%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG I DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGQEFIIIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310 D VE ++ + +E AD++L + + S Sbjct: 65 DGVETHMAAQSLMAIEEADIVLFMVDARS 93 >gi|78186288|ref|YP_374331.1| GTP-binding protein EngA [Chlorobium luteolum DSM 273] gi|123583448|sp|Q3B5U3|DER_PELLD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|78166190|gb|ABB23288.1| Small GTP-binding protein domain [Chlorobium luteolum DSM 273] Length = 436 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 51/89 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN + ++ AIV PG TRD + +G ++ DT G D Sbjct: 5 IALVGRPNVGKSTLFNRILREKAAIVDPTPGVTRDRHIAEGHWQGREFRLMDTGGYAPED 64 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310 ++ +++T + +++AD+I+ L ++ S Sbjct: 65 GVISTAMLEQTMMAIQDADIIIFLADVRS 93 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 35/63 (55%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ ++G N GKSS NAL + IV+ IPGTTRD + + + DTAG+R+ Sbjct: 178 RLAVIGRPNVGKSSFVNALLGSNRQIVSSIPGTTRDAIDTRFTRKQQEFMLIDTAGLRKR 237 Query: 281 DDI 283 I Sbjct: 238 TKI 240 >gi|15639676|ref|NP_219126.1| GTP-binding protein EngA [Treponema pallidum subsp. pallidum str. Nichols] gi|189025914|ref|YP_001933686.1| GTP-binding protein EngA [Treponema pallidum subsp. pallidum SS14] gi|8134438|sp|P96128|DER_TREPA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|238689339|sp|B2S3S8|DER_TREPS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|1732241|gb|AAB38705.1| GTP-binding protein [Treponema pallidum] gi|3322993|gb|AAC65658.1| GTP-binding protein [Treponema pallidum subsp. pallidum str. Nichols] gi|189018489|gb|ACD71107.1| GTP-binding protein [Treponema pallidum subsp. pallidum SS14] gi|291060055|gb|ADD72790.1| ribosome-associated GTPase EngA [Treponema pallidum subsp. pallidum str. Chicago] Length = 460 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 77/162 (47%), Gaps = 27/162 (16%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKS+L N L ++ V++V D GTTRDV+T ++ + Y I+DTAGIR+ Sbjct: 199 RLAIVGKPNTGKSTLMNYLMRRTVSLVCDRAGTTRDVVTGHVEFKQYKFIIADTAGIRKR 258 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEI------NSKKEIS--FPKNIDFIFIGTKS 329 + +E + R + D++L + + KK +S +N+ IF+ K Sbjct: 259 QKVYESIEYYSVIRAISILNAVDIVLYIVDARDGFSEQDKKIVSQISKRNLGVIFLLNKW 318 Query: 330 DLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371 DL EG LI K K + F K+ F Sbjct: 319 DLL----------------EGSTSLIAKKKRDVRTAFGKMNF 344 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/91 (29%), Positives = 53/91 (58%), Gaps = 6/91 (6%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI--- 277 ++VI+G N GKS+LFN L + +I ++ G TRD + + L G+ +++ DT+G Sbjct: 22 RVVIVGRPNVGKSTLFNRLLGRRRSITSNTSGVTRDSIEETVILRGFPLRLVDTSGFTVF 81 Query: 278 ---RETDDIVEKEGIKRTFLEVENADLILLL 305 + + ++ +++T+ ++ AD ILL+ Sbjct: 82 SEKKASRQHIDTLVLEQTYKSIQCADKILLV 112 >gi|168180594|ref|ZP_02615258.1| GTP-binding protein [Clostridium botulinum NCTC 2916] gi|226949875|ref|YP_002804966.1| GTP-binding protein EngA [Clostridium botulinum A2 str. Kyoto] gi|254783146|sp|C1FSU2|DER_CLOBJ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|182668460|gb|EDT80439.1| GTP-binding protein [Clostridium botulinum NCTC 2916] gi|226841615|gb|ACO84281.1| ribosome-associated GTPase EngA [Clostridium botulinum A2 str. Kyoto] gi|322806789|emb|CBZ04358.1| GTP-binding protein EngA [Clostridium botulinum H04402 065] Length = 439 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/85 (37%), Positives = 52/85 (61%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFN LA K +AIV D PG TRD + + + Y + DT GI ++ Sbjct: 6 VAIVGRPNVGKSTLFNKLAGKRIAIVQDTPGVTRDRIYAEAEWLNYKFTMIDTGGIEPKS 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 +DI+ + ++ + +E A++I+ L Sbjct: 66 EDIIVSQMRRQAQIAIEMANVIIFL 90 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 34/87 (39%), Positives = 51/87 (58%), Gaps = 3/87 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I +G N GKSSL N L ++ IV+DIPGTTRD + +D E + DTAG+R Sbjct: 179 IAFIGKPNVGKSSLINKLLGEERLIVSDIPGTTRDSIDSYVDTEFGEFTLIDTAGLRRKS 238 Query: 282 DI---VEKEGIKRTFLEVENADLILLL 305 + +E+ + RT+ +E AD+ +L+ Sbjct: 239 KVKEEIERYSVIRTYASIERADVCILM 265 >gi|78217514|gb|ABB36863.1| GTP-binding protein EngA [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 475 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 K+ +LG NAGKSSL NAL+ IV+D+ GTTRD + I ++L G DTAG+R Sbjct: 210 KLAMLGRPNAGKSSLVNALSGSRRMIVSDVAGTTRDSVDIAVELGGRRYVFVDTAGVRRR 269 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305 + D VE+ + + AD+ L++ Sbjct: 270 AKIQDPVERYSVNSSLKSTTKADVTLVV 297 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 25/53 (47%), Positives = 32/53 (60%), Gaps = 7/53 (13%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273 KI ++G N GKS+LFN L + + AI D PG TRD +EGY VK+ D Sbjct: 24 KIALIGRPNVGKSTLFNRLIRSNRAITHDRPGVTRD------RMEGY-VKVGD 69 >gi|34558325|ref|NP_908140.1| GTP-binding protein EngA [Wolinella succinogenes DSM 1740] gi|41016995|sp|Q7M7W8|DER_WOLSU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|34484044|emb|CAE11040.1| PUTATIVE GTP-BINDING PROTEIN [Wolinella succinogenes] Length = 470 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/87 (41%), Positives = 53/87 (60%), Gaps = 2/87 (2%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSL NAL + ++V+D+ GTT D + +++EG V DTAGIR Sbjct: 202 RVGIIGKVNVGKSSLLNALLGSERSVVSDVAGTTIDPVDESMEIEGQKVLFVDTAGIRRR 261 Query: 281 DDI--VEKEGIKRTFLEVENADLILLL 305 I +EK + RT +E AD+ LL+ Sbjct: 262 GKIEGIEKYALDRTQKALEKADIALLV 288 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/56 (51%), Positives = 39/56 (69%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 I I+G N GKSSLFN LAK+ +AI +D+ GTTRD+ +++EG V + DT GI Sbjct: 4 IAIIGKPNVGKSSLFNRLAKERIAITSDVSGTTRDIKKQVIEIEGNEVLLVDTGGI 59 >gi|332883522|gb|EGK03805.1| GTP-binding protein engA [Dysgonomonas mossii DSM 22836] Length = 468 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/92 (44%), Positives = 58/92 (63%), Gaps = 11/92 (11%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD---LEGYLVKISDTAGI 277 +I I+G NAGKSSL NAL ++ IVT+I GTTRD + D L+ YLV DTAGI Sbjct: 208 RIAIVGRPNAGKSSLVNALMDEERNIVTNIAGTTRDSIYTRFDKFNLDFYLV---DTAGI 264 Query: 278 RE----TDDIVEKEGIKRTFLEVENADLILLL 305 R+ T+D+ E + R+ +EN+D+ +L+ Sbjct: 265 RKKGKVTEDL-EYYSVIRSIKAIENSDVCVLM 295 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 1/91 (1%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277 G + I+G N GKS+LFN L + AIV + GTTRD ++ G + DT G + Sbjct: 33 GNLVAIVGRPNVGKSTLFNRLTESRQAIVDETSGTTRDRQYGKVEWGGQDFSLVDTGGWV 92 Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEI 308 ++D+ E E K+ + +E AD+IL + ++ Sbjct: 93 VNSEDVFENEINKQVAIAIEEADVILFMVDV 123 >gi|256820197|ref|YP_003141476.1| GTP-binding protein EngA [Capnocytophaga ochracea DSM 7271] gi|256581780|gb|ACU92915.1| small GTP-binding protein [Capnocytophaga ochracea DSM 7271] Length = 434 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G NAGKSS NAL +D IVTDI GTTRD + + G+ + DTAGIR Sbjct: 176 RFAVVGRPNAGKSSFINALIGEDRYIVTDIAGTTRDAIDTKYNRFGFEFNLVDTAGIRRK 235 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E + R+ +E++D+ +L+ Sbjct: 236 AKVKEDLEFYSVMRSIRAIEHSDVCILM 263 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 49/173 (28%), Positives = 82/173 (47%), Gaps = 22/173 (12%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 + I+G N GKS+ FN L K+ AIV + G TRD D G + DT G + Sbjct: 5 VAIVGRPNVGKSTFFNRLIKRREAIVDAVSGVTRDRHYGKTDWNGVSFSVIDTGGYLAGG 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS---------FPKNIDFIFIGT---- 327 DD EKE K+ L ++ AD I+ + +N ++ ++ K I + Sbjct: 65 DDSFEKEINKQVALAIDEADAIIFM--VNVEEGLTGMDESVAELLRKCHKPILVAVNKVD 122 Query: 328 ----KSDLYSTYTEEYDHL--ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374 ++D++ Y ++HL +SS G G EL++ + ++L K K+ ++P Sbjct: 123 SNNRRNDMHEFYALGFEHLYALSSVNGSGTGELLDDLVALLPEKEKQEENTLP 175 >gi|253689379|ref|YP_003018569.1| small GTP-binding protein [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259645883|sp|C6DBH0|DER_PECCP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|251755957|gb|ACT14033.1| small GTP-binding protein [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 495 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 49/84 (58%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG+ I DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGHEFIIVDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 D VE ++ + +E AD++L + Sbjct: 65 DGVETRMAGQSLVAIEEADIVLFM 88 Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 34/98 (34%), Positives = 61/98 (62%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I + + + DTAG+R+ Sbjct: 209 KLAIVGRPNVGKSTLTNRILGEERVVVFDMPGTTRDSIYIPMVRDEREYVLIDTAGVRKR 268 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + VEK + +T +E+A+++LL+ I++++ IS Sbjct: 269 GKVTETVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 304 >gi|122701421|emb|CAL88100.1| GTPase [Helicobacter pylori] gi|122701485|emb|CAL88132.1| GTPase [Helicobacter pylori] Length = 170 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LAK+ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|242255834|gb|ACS88901.1| GTPase [Helicobacter pylori] gi|242255836|gb|ACS88902.1| GTPase [Helicobacter pylori] Length = 170 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 51/82 (62%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI++D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAIISDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|153939462|ref|YP_001391817.1| GTP-binding protein EngA [Clostridium botulinum F str. Langeland] gi|166224329|sp|A7GGA7|DER_CLOBL RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|152935358|gb|ABS40856.1| ribosome-associated GTPase EngA [Clostridium botulinum F str. Langeland] gi|295319842|gb|ADG00220.1| ribosome-associated GTPase EngA [Clostridium botulinum F str. 230613] Length = 439 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/85 (37%), Positives = 52/85 (61%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFN LA K +AIV D PG TRD + + + Y + DT GI ++ Sbjct: 6 VAIVGRPNVGKSTLFNKLAGKRIAIVQDTPGVTRDRIYAEAEWLNYKFTMIDTGGIEPKS 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 +DI+ + ++ + +E A++I+ L Sbjct: 66 EDIIVSQMRRQAQIAIEMANVIIFL 90 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 34/87 (39%), Positives = 51/87 (58%), Gaps = 3/87 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I +G N GKSSL N L ++ IV+DIPGTTRD + +D E + DTAG+R Sbjct: 179 IAFIGKPNVGKSSLINKLLGEERLIVSDIPGTTRDSIDSYVDTEFGEFTLIDTAGLRRKS 238 Query: 282 DI---VEKEGIKRTFLEVENADLILLL 305 + +E+ + RT+ +E AD+ +L+ Sbjct: 239 KVKEEIERYSVIRTYASIERADVCILM 265 >gi|122702589|emb|CAL88484.1| GTPase [Helicobacter pylori] Length = 170 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/84 (42%), Positives = 50/84 (59%), Gaps = 1/84 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ L GY V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKTALNGYEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ KE + +DLIL + Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYV 92 >gi|320527698|ref|ZP_08028870.1| ribosome-associated GTPase EngA [Solobacterium moorei F0204] gi|320131941|gb|EFW24499.1| ribosome-associated GTPase EngA [Solobacterium moorei F0204] Length = 437 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 35/91 (38%), Positives = 50/91 (54%), Gaps = 3/91 (3%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 G I ++G N GKSSL NA+ K+ +IV+++ GTTRD + EG I DTAGI Sbjct: 173 TGIHIAVIGEPNVGKSSLVNAILKEKRSIVSNVQGTTRDAVDTPFVYEGKPYVIVDTAGI 232 Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLL 305 R+ + VEK + R +E D+ L + Sbjct: 233 RKRGKVYESVEKYSVLRAMTAIERCDVALFV 263 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 2/90 (2%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS++FN +A V+IV D PG TRD + + G ++ DT GI+ D Sbjct: 6 IAIVGRPNVGKSTIFNRIAGSRVSIVEDFPGVTRDRIYTTGEWTGKKFQLIDTGGIQLAD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK 311 ++E + + + AD+IL + +N K Sbjct: 66 QPYQEEIRAQVQIAMNEADVILFV--VNGK 93 >gi|242255824|gb|ACS88896.1| GTPase [Helicobacter pylori] Length = 170 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LAK+ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702635|emb|CAL88507.1| GTPase [Helicobacter pylori] Length = 170 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT GI + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGIAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122700591|emb|CAL87884.1| GTPase [Helicobacter pylori] Length = 170 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LAK+ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|32267038|ref|NP_861070.1| GTP-binding protein EngA [Helicobacter hepaticus ATCC 51449] gi|41017015|sp|Q7VFY6|DER_HELHP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|32263090|gb|AAP78136.1| GTP-binding protein YphC [Helicobacter hepaticus ATCC 51449] Length = 487 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 49/177 (27%), Positives = 88/177 (49%), Gaps = 29/177 (16%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 I+G N GKSSL NAL K+ ++V+++ GTT D + ++D+EG V+ DTAGIR I Sbjct: 207 IIGRVNVGKSSLLNALLGKERSVVSEVAGTTIDPVDDEMDIEGKRVRFVDTAGIRRASKI 266 Query: 284 --VEKEGIKRTFLEVENADLILLL-------KEINSKKEISFPKN-IDFIFIGTKSDL-- 331 +EK + RT + + +++L+ E++ K PK+ + I + K D Sbjct: 267 WGIEKFALLRTNAALAQSHIVILVLDASESFVELDEKISSLIPKHALGVIVVLNKWDKKH 326 Query: 332 --YSTYTEEYDH-----------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375 Y +E+ H +S+ G +++L +I + +++ + IP+ Sbjct: 327 KEYKEIIKEFKHRFPFLSFAPVMTLSALNGRNIDKLKKEILKV----YQRFAYRIPT 379 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 36/88 (40%), Positives = 51/88 (57%), Gaps = 1/88 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN L K+ +AI +D+ GTTRDV D+ G V++ DT GI + + Sbjct: 4 IAILGKPNVGKSSLFNRLIKQHLAITSDVSGTTRDVKRACFDISGVEVELLDTGGIDKAE 63 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN 309 + K + + ADL+L + + N Sbjct: 64 GLFAKVS-ANSLKAGQEADLVLYMVDGN 90 >gi|301123827|ref|XP_002909640.1| ras family GTPase, putative [Phytophthora infestans T30-4] gi|262100402|gb|EEY58454.1| ras family GTPase, putative [Phytophthora infestans T30-4] Length = 503 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 34/86 (39%), Positives = 50/86 (58%), Gaps = 1/86 (1%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I ++G +N GKS+LFN L K AIV ++PGTTRD L G + + DT G+ + Sbjct: 43 RIALVGRTNVGKSTLFNRLTKTRSAIVHNVPGTTRDRRYKRATLAGLELDVVDTGGLEDA 102 Query: 281 DDIVEKEG-IKRTFLEVENADLILLL 305 +EG +++T L V ADL+ L Sbjct: 103 PSGTLEEGMLEQTRLAVHEADLVFFL 128 Score = 40.8 bits (94), Expect = 0.39, Method: Compositional matrix adjust. Identities = 41/173 (23%), Positives = 74/173 (42%), Gaps = 45/173 (26%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTD--IPGTTRDVLTIDLDLEGYLVKISDTAGI- 277 K+ I+G N GKS+L N + + D + +P T G +K+ DTAGI Sbjct: 209 KLAIVGRPNVGKSTLLNKIVRNDRVLTGPEYVPWT----------FHGRSIKLVDTAGIR 258 Query: 278 ----RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNI---------DFIF 324 R+ DD +E ++ +F +++A +++++ +++ K I I + Sbjct: 259 RYGKRDHDDQIENLSVRDSFRAIDSAQVVVVVVDMSEPKLIHMDLTIAQRVIEEGRALVL 318 Query: 325 IGTKSDLYST---------YTEEYDHL----------ISSFTGEGLEELINKI 358 KSDL E D L IS+ TG G+++L+ ++ Sbjct: 319 AANKSDLAGASVDLEMQRIQNELQDSLAQVRGVPVVPISALTGNGIKKLVPEV 371 >gi|62289366|ref|YP_221159.1| GTP-binding protein EngA [Brucella abortus bv. 1 str. 9-941] gi|82699291|ref|YP_413865.1| GTP-binding protein EngA [Brucella melitensis biovar Abortus 2308] gi|189023620|ref|YP_001934388.1| GTP-binding protein EngA [Brucella abortus S19] gi|237814855|ref|ZP_04593853.1| small GTP-binding protein [Brucella abortus str. 2308 A] gi|254688683|ref|ZP_05151937.1| GTP-binding protein EngA [Brucella abortus bv. 6 str. 870] gi|254696810|ref|ZP_05158638.1| GTP-binding protein EngA [Brucella abortus bv. 2 str. 86/8/59] gi|254729717|ref|ZP_05188295.1| GTP-binding protein EngA [Brucella abortus bv. 4 str. 292] gi|256256930|ref|ZP_05462466.1| GTP-binding protein EngA [Brucella abortus bv. 9 str. C68] gi|260545880|ref|ZP_05821621.1| GTP-binding protein engA [Brucella abortus NCTC 8038] gi|260754159|ref|ZP_05866507.1| GTP-binding protein engA [Brucella abortus bv. 6 str. 870] gi|260757379|ref|ZP_05869727.1| GTP-binding protein engA [Brucella abortus bv. 4 str. 292] gi|260761203|ref|ZP_05873546.1| GTP-binding protein engA [Brucella abortus bv. 2 str. 86/8/59] gi|260883184|ref|ZP_05894798.1| GTP-binding protein engA [Brucella abortus bv. 9 str. C68] gi|297247781|ref|ZP_06931499.1| ribosome-associated GTPase EngA [Brucella abortus bv. 5 str. B3196] gi|75505338|sp|Q57EY6|DER_BRUAB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|123546332|sp|Q2YM98|DER_BRUA2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|238691492|sp|B2S9M3|DER_BRUA1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|62195498|gb|AAX73798.1| GTP-binding protein [Brucella abortus bv. 1 str. 9-941] gi|82615392|emb|CAJ10361.1| Uridine kinase:ATP/GTP-binding site motif A (P-loop):Ras GTPase superfamily:GTP-binding protein, HSR1-related:Small GTP-bindi [Brucella melitensis biovar Abortus 2308] gi|189019192|gb|ACD71914.1| GTP-binding protein EngA [Brucella abortus S19] gi|237789692|gb|EEP63902.1| small GTP-binding protein [Brucella abortus str. 2308 A] gi|260097287|gb|EEW81162.1| GTP-binding protein engA [Brucella abortus NCTC 8038] gi|260667697|gb|EEX54637.1| GTP-binding protein engA [Brucella abortus bv. 4 str. 292] gi|260671635|gb|EEX58456.1| GTP-binding protein engA [Brucella abortus bv. 2 str. 86/8/59] gi|260674267|gb|EEX61088.1| GTP-binding protein engA [Brucella abortus bv. 6 str. 870] gi|260872712|gb|EEX79781.1| GTP-binding protein engA [Brucella abortus bv. 9 str. C68] gi|297174950|gb|EFH34297.1| ribosome-associated GTPase EngA [Brucella abortus bv. 5 str. B3196] Length = 483 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 79/165 (47%), Gaps = 24/165 (14%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G+ + I+G N GKS+LFN L + +A+V D+PG TRD D L ++ DTAG+ Sbjct: 2 GFTLAIVGRPNVGKSTLFNRLVGRKLALVDDLPGVTRDRRIHDAKLYDLKFQVIDTAGLE 61 Query: 279 E-TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF-----------IFIG 326 E +D +E +T + AD +L + I++K I+ P + F + + Sbjct: 62 EAANDSLEARMRAQTEAAISEADAVLFV--IDAKAGIT-PADSTFAEAVRRSGKPVVLVA 118 Query: 327 TKSDLYSTYTEEYDHL---------ISSFTGEGLEELINKIKSIL 362 K++ + YD IS+ G+G+ +L + I +L Sbjct: 119 NKAEARGSEAGMYDAFQLGLGEPCPISAEHGQGMPDLRDAIVELL 163 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 37/66 (56%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I I+G NAGKS+L N + +D + G TRD ++ D + G + + DTAG+R Sbjct: 213 RIAIVGRPNAGKSTLINTMLGEDRLLTGPEAGITRDSISADWEWHGRKINLFDTAGMRRK 272 Query: 281 DDIVEK 286 + EK Sbjct: 273 ARVQEK 278 >gi|315225621|ref|ZP_07867430.1| ribosome-associated GTPase EngA [Capnocytophaga ochracea F0287] gi|314944438|gb|EFS96478.1| ribosome-associated GTPase EngA [Capnocytophaga ochracea F0287] Length = 434 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G NAGKSS NAL +D IVTDI GTTRD + + G+ + DTAGIR Sbjct: 176 RFAVVGRPNAGKSSFINALIGEDRYIVTDIAGTTRDAIDTKYNRFGFEFNLVDTAGIRRK 235 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E + R+ +E++D+ +L+ Sbjct: 236 AKVKEDLEFYSVMRSIRAIEHSDVCILM 263 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/173 (28%), Positives = 80/173 (46%), Gaps = 22/173 (12%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 + I+G N GKS+ FN L K+ AIV + G TRD D G + DT G + Sbjct: 5 VAIVGRPNVGKSTFFNRLIKRREAIVDAVSGVTRDRHYGKTDWNGVSFSVIDTGGYLAGG 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI----------------NSKKEISFPKN-IDFI 323 DD EKE K+ L ++ AD I+ + + +K I N +D Sbjct: 65 DDSFEKEINKQVALAIDEADAIIFMVNVEEGLTGMDESVAELLRKCRKPILVAVNKVD-- 122 Query: 324 FIGTKSDLYSTYTEEYDHL--ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374 ++D++ Y ++HL +SS G G EL++ + ++L K ++ ++P Sbjct: 123 SNNRRNDMHEFYALGFEHLYALSSVNGSGTGELLDDLVALLPVKEQQEEDTLP 175 >gi|312962901|ref|ZP_07777388.1| GTP-binding protein EngA [Pseudomonas fluorescens WH6] gi|311282928|gb|EFQ61522.1| GTP-binding protein EngA [Pseudomonas fluorescens WH6] Length = 489 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 48/183 (26%), Positives = 83/183 (45%), Gaps = 31/183 (16%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 ++G KI I+G N GKS+L N + +D IV D PGTTRD + I + + DTAG Sbjct: 192 KDGIKIAIIGRPNVGKSTLVNRMLGEDRVIVYDQPGTTRDSIYIPFERNDEKYTLIDTAG 251 Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLLKEIN------------------------ 309 +R+ I VEK + +T +++A++++ + + Sbjct: 252 VRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDAREGVVDHDLNLLGFALEAGRALVIA 311 Query: 310 -SKKEISFPKNIDFIFIGTKSDLYSTYTEEYD-HLISSFTGEGLEELINKIKSILSNKFK 367 +K + P DF+ I + L+ + E D H IS+ G G+ L +++ + Sbjct: 312 INKWDGMTPSERDFVKIELQRRLF--FVEFADIHFISALHGTGVGNLYASVQNSFKSAVT 369 Query: 368 KLP 370 + P Sbjct: 370 RWP 372 Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L + AIV D+ G TRD + +G I DT GI + Sbjct: 5 IALVGRPNVGKSTLFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYIIVDTGGISGDE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++++ +++ L +E AD++L L Sbjct: 65 HGMDEKMAEQSLLAIEEADVVLFL 88 >gi|261340815|ref|ZP_05968673.1| ribosome-associated GTPase EngA [Enterobacter cancerogenus ATCC 35316] gi|288317241|gb|EFC56179.1| ribosome-associated GTPase EngA [Enterobacter cancerogenus ATCC 35316] Length = 491 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 62/98 (63%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I + + + DTAG+R+ Sbjct: 205 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMQRDEREFVLIDTAGVRKR 264 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D+VEK + +T +E+A+++LL+ I++++ IS Sbjct: 265 GKITDVVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 300 Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 D VE +++ L +E AD++L + Sbjct: 65 DGVETRMAEQSLLAIEEADVVLFM 88 >gi|122702445|emb|CAL88413.1| GTPase [Helicobacter pylori] Length = 170 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V+I DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVEILDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122701375|emb|CAL88077.1| GTPase [Helicobacter pylori] gi|122701413|emb|CAL88096.1| GTPase [Helicobacter pylori] Length = 170 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LAK+ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|17987833|ref|NP_540467.1| GTP-binding protein EngA [Brucella melitensis bv. 1 str. 16M] gi|225851918|ref|YP_002732151.1| GTP-binding protein EngA [Brucella melitensis ATCC 23457] gi|256044100|ref|ZP_05447011.1| GTP-binding protein EngA [Brucella melitensis bv. 1 str. Rev.1] gi|256112898|ref|ZP_05453814.1| GTP-binding protein EngA [Brucella melitensis bv. 3 str. Ether] gi|256264570|ref|ZP_05467102.1| GTP-binding protein engA [Brucella melitensis bv. 2 str. 63/9] gi|260563458|ref|ZP_05833944.1| GTP-binding protein engA [Brucella melitensis bv. 1 str. 16M] gi|265990512|ref|ZP_06103069.1| GTP-binding protein engA [Brucella melitensis bv. 1 str. Rev.1] gi|265994340|ref|ZP_06106897.1| GTP-binding protein engA [Brucella melitensis bv. 3 str. Ether] gi|26006723|sp|Q8YFH2|DER_BRUME RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|254783140|sp|C0RH89|DER_BRUMB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|17983561|gb|AAL52731.1| gtp-binding protein [Brucella melitensis bv. 1 str. 16M] gi|225640283|gb|ACO00197.1| small GTP-binding protein [Brucella melitensis ATCC 23457] gi|260153474|gb|EEW88566.1| GTP-binding protein engA [Brucella melitensis bv. 1 str. 16M] gi|262765453|gb|EEZ11242.1| GTP-binding protein engA [Brucella melitensis bv. 3 str. Ether] gi|263001296|gb|EEZ13871.1| GTP-binding protein engA [Brucella melitensis bv. 1 str. Rev.1] gi|263094935|gb|EEZ18643.1| GTP-binding protein engA [Brucella melitensis bv. 2 str. 63/9] gi|326408416|gb|ADZ65481.1| GTP-binding protein EngA [Brucella melitensis M28] gi|326538130|gb|ADZ86345.1| small GTP-binding protein [Brucella melitensis M5-90] Length = 483 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 79/165 (47%), Gaps = 24/165 (14%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G+ + I+G N GKS+LFN L + +A+V D+PG TRD D L ++ DTAG+ Sbjct: 2 GFTLAIVGRPNVGKSTLFNRLVGRKLALVDDLPGVTRDRRIHDAKLYDLKFQVIDTAGLE 61 Query: 279 E-TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF-----------IFIG 326 E +D +E +T + AD +L + I++K I+ P + F + + Sbjct: 62 EAANDSLEARMRAQTEAAISEADAVLFV--IDAKAGIT-PADSTFAEAVRRSGKPVVLVA 118 Query: 327 TKSDLYSTYTEEYDHL---------ISSFTGEGLEELINKIKSIL 362 K++ + YD IS+ G+G+ +L + I +L Sbjct: 119 NKAEARGSEAGMYDAFQLGLGEPCPISAEHGQGMPDLRDAIVELL 163 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 38/66 (57%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I I+G NAGKS+L N + +D + G TRD ++ D + G +K+ DTAG+R Sbjct: 213 RIAIVGRPNAGKSTLINTMLGEDRLLTGPEAGITRDSISADWEWHGRKIKLFDTAGMRRK 272 Query: 281 DDIVEK 286 + EK Sbjct: 273 ARVQEK 278 >gi|23501279|ref|NP_697406.1| GTP-binding protein EngA [Brucella suis 1330] gi|161618354|ref|YP_001592241.1| GTP-binding protein EngA [Brucella canis ATCC 23365] gi|225626893|ref|ZP_03784932.1| small GTP-binding protein [Brucella ceti str. Cudo] gi|254703735|ref|ZP_05165563.1| GTP-binding protein EngA [Brucella suis bv. 3 str. 686] gi|254707885|ref|ZP_05169713.1| GTP-binding protein EngA [Brucella pinnipedialis M163/99/10] gi|254709531|ref|ZP_05171342.1| GTP-binding protein EngA [Brucella pinnipedialis B2/94] gi|254713052|ref|ZP_05174863.1| GTP-binding protein EngA [Brucella ceti M644/93/1] gi|254716595|ref|ZP_05178406.1| GTP-binding protein EngA [Brucella ceti M13/05/1] gi|254718562|ref|ZP_05180373.1| GTP-binding protein EngA [Brucella sp. 83/13] gi|256031025|ref|ZP_05444639.1| GTP-binding protein EngA [Brucella pinnipedialis M292/94/1] gi|256060517|ref|ZP_05450686.1| GTP-binding protein EngA [Brucella neotomae 5K33] gi|256159079|ref|ZP_05456908.1| GTP-binding protein EngA [Brucella ceti M490/95/1] gi|256254428|ref|ZP_05459964.1| GTP-binding protein EngA [Brucella ceti B1/94] gi|256368832|ref|YP_003106338.1| GTP-binding protein EngA [Brucella microti CCM 4915] gi|260168157|ref|ZP_05754968.1| GTP-binding protein EngA [Brucella sp. F5/99] gi|260567011|ref|ZP_05837481.1| GTP-binding protein engA [Brucella suis bv. 4 str. 40] gi|261218394|ref|ZP_05932675.1| GTP-binding protein engA [Brucella ceti M13/05/1] gi|261221596|ref|ZP_05935877.1| GTP-binding protein engA [Brucella ceti B1/94] gi|261315376|ref|ZP_05954573.1| GTP-binding protein engA [Brucella pinnipedialis M163/99/10] gi|261317057|ref|ZP_05956254.1| GTP-binding protein engA [Brucella pinnipedialis B2/94] gi|261320757|ref|ZP_05959954.1| GTP-binding protein engA [Brucella ceti M644/93/1] gi|261324511|ref|ZP_05963708.1| GTP-binding protein engA [Brucella neotomae 5K33] gi|261754380|ref|ZP_05998089.1| GTP-binding protein engA [Brucella suis bv. 3 str. 686] gi|261757615|ref|ZP_06001324.1| GTP-binding protein engA [Brucella sp. F5/99] gi|265983537|ref|ZP_06096272.1| GTP-binding protein engA [Brucella sp. 83/13] gi|265988095|ref|ZP_06100652.1| GTP-binding protein engA [Brucella pinnipedialis M292/94/1] gi|265997559|ref|ZP_06110116.1| GTP-binding protein engA [Brucella ceti M490/95/1] gi|294851760|ref|ZP_06792433.1| ribosome-associated GTPase EngA [Brucella sp. NVSL 07-0026] gi|306837298|ref|ZP_07470181.1| small GTP-binding protein [Brucella sp. NF 2653] gi|306845011|ref|ZP_07477592.1| small GTP-binding protein [Brucella sp. BO1] gi|37999701|sp|Q8G2E8|DER_BRUSU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|189037138|sp|A9M8F4|DER_BRUC2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|23347166|gb|AAN29321.1| GTP-binding protein [Brucella suis 1330] gi|161335165|gb|ABX61470.1| small GTP-binding protein domain [Brucella canis ATCC 23365] gi|225618550|gb|EEH15593.1| small GTP-binding protein [Brucella ceti str. Cudo] gi|255998990|gb|ACU47389.1| GTP-binding protein EngA [Brucella microti CCM 4915] gi|260156529|gb|EEW91609.1| GTP-binding protein engA [Brucella suis bv. 4 str. 40] gi|260920180|gb|EEX86833.1| GTP-binding protein engA [Brucella ceti B1/94] gi|260923483|gb|EEX90051.1| GTP-binding protein engA [Brucella ceti M13/05/1] gi|261293447|gb|EEX96943.1| GTP-binding protein engA [Brucella ceti M644/93/1] gi|261296280|gb|EEX99776.1| GTP-binding protein engA [Brucella pinnipedialis B2/94] gi|261300491|gb|EEY03988.1| GTP-binding protein engA [Brucella neotomae 5K33] gi|261304402|gb|EEY07899.1| GTP-binding protein engA [Brucella pinnipedialis M163/99/10] gi|261737599|gb|EEY25595.1| GTP-binding protein engA [Brucella sp. F5/99] gi|261744133|gb|EEY32059.1| GTP-binding protein engA [Brucella suis bv. 3 str. 686] gi|262552027|gb|EEZ08017.1| GTP-binding protein engA [Brucella ceti M490/95/1] gi|264660292|gb|EEZ30553.1| GTP-binding protein engA [Brucella pinnipedialis M292/94/1] gi|264662129|gb|EEZ32390.1| GTP-binding protein engA [Brucella sp. 83/13] gi|294820349|gb|EFG37348.1| ribosome-associated GTPase EngA [Brucella sp. NVSL 07-0026] gi|306274643|gb|EFM56432.1| small GTP-binding protein [Brucella sp. BO1] gi|306407611|gb|EFM63807.1| small GTP-binding protein [Brucella sp. NF 2653] Length = 483 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 79/165 (47%), Gaps = 24/165 (14%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G+ + I+G N GKS+LFN L + +A+V D+PG TRD D L ++ DTAG+ Sbjct: 2 GFTLAIVGRPNVGKSTLFNRLVGRKLALVDDLPGVTRDRRIHDAKLYDLKFQVIDTAGLE 61 Query: 279 E-TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF-----------IFIG 326 E +D +E +T + AD +L + I++K I+ P + F + + Sbjct: 62 EAANDSLEARMRAQTEAAISEADAVLFV--IDAKAGIT-PADSTFAEAVRRSGKPVVLVA 118 Query: 327 TKSDLYSTYTEEYDHL---------ISSFTGEGLEELINKIKSIL 362 K++ + YD IS+ G+G+ +L + I +L Sbjct: 119 NKAEARGSEAGMYDAFQLGLGEPCPISAEHGQGMPDLRDAIVELL 163 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 38/66 (57%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I I+G NAGKS+L N + +D + G TRD ++ D + G +K+ DTAG+R Sbjct: 213 RIAIVGRPNAGKSTLINTMLGEDRLLTGPEAGITRDSISADWEWHGRKIKLFDTAGMRRK 272 Query: 281 DDIVEK 286 + EK Sbjct: 273 ARVQEK 278 >gi|303257594|ref|ZP_07343606.1| ribosome-associated GTPase EngA [Burkholderiales bacterium 1_1_47] gi|330999635|ref|ZP_08323344.1| ribosome biogenesis GTPase Der [Parasutterella excrementihominis YIT 11859] gi|302859564|gb|EFL82643.1| ribosome-associated GTPase EngA [Burkholderiales bacterium 1_1_47] gi|329574141|gb|EGG55717.1| ribosome biogenesis GTPase Der [Parasutterella excrementihominis YIT 11859] Length = 443 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 53/88 (60%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I G NAGKS+L NAL +D I D+PGTTRD + ++ + + DTAG+R Sbjct: 179 KVAIAGRPNAGKSTLINALIGEDRLIAFDMPGTTRDAIEVEFQYKDRDYTLIDTAGLRRK 238 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +EK + +T +E++++++LL Sbjct: 239 GKVFEAIEKFSVIKTLQAIESSNVVVLL 266 Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust. Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 3/86 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--E 279 I ++G N GKS+LFN L + A+V D PG TRD D + + DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVADFPGLTRDRHYGDGRIGDKPYLVIDTGGFEPIR 64 Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305 T+ IV KE + L + +D++L L Sbjct: 65 TEGIV-KEMTGQAQLAITESDVVLFL 89 >gi|256383817|gb|ACU78387.1| ribosome-associated GTPase EngA [Mycoplasma mycoides subsp. capri str. GM12] gi|256384647|gb|ACU79216.1| ribosome-associated GTPase EngA [Mycoplasma mycoides subsp. capri str. GM12] gi|296455372|gb|ADH21607.1| ribosome-associated GTPase EngA [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 435 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 44/121 (36%), Positives = 70/121 (57%), Gaps = 8/121 (6%) Query: 199 LKNDISSHISQGKLGEIIRN-GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257 L + + S+IS+ + EII++ KI I+G N GKSSL N+L ++ IV++I GTT D Sbjct: 155 LLDKVISYISKNE--EIIKDDSTKIAIIGRPNVGKSSLVNSLVNENRMIVSEIEGTTLDA 212 Query: 258 LTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEI 314 + I + DTAGIR+ + +EK R+ + NAD++LL+ I++ K I Sbjct: 213 VDISFSYNKKKYTVIDTAGIRKKSKLGQTIEKYSYLRSLSAISNADIVLLM--IDATKPI 270 Query: 315 S 315 + Sbjct: 271 T 271 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKSSLFN + K+ +IV + PG TRD + + + DT GI +D Sbjct: 6 VAIVGKPNVGKSSLFNRIIKEKKSIVDNKPGVTRDRIYSSAEWLTREFILIDTGGISLSD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + E +T + +E AD+I+ + Sbjct: 66 QLFSNEIKLQTQIAIEQADVIIFV 89 >gi|213961763|ref|ZP_03390029.1| ribosome-associated GTPase EngA [Capnocytophaga sputigena Capno] gi|213955552|gb|EEB66868.1| ribosome-associated GTPase EngA [Capnocytophaga sputigena Capno] Length = 434 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G NAGKSS NAL +D IVTDI GTTRD + + G+ + DTAGIR Sbjct: 176 RFAVVGRPNAGKSSFINALIGEDRYIVTDIAGTTRDAIDTKYNRFGFEFNLVDTAGIRRK 235 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E + R+ +E++D+ +L+ Sbjct: 236 AKVKEDLEFYSVMRSIRAIEHSDVCILM 263 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 77/164 (46%), Gaps = 22/164 (13%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 + ++G N GKS+ FN L K+ AIV + G TRD D G + DT G + Sbjct: 5 VAVVGRPNVGKSTFFNRLIKRREAIVDAVSGVTRDRHYGKTDWNGVSFSVIDTGGYLAGG 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS---------FPKNIDFIFIGT---- 327 DD EKE K+ L ++ AD I+ + +N ++ ++ K I + Sbjct: 65 DDSFEKEINKQVALAIDEADAIIFM--VNVEEGLTGMDEAVSEMLRKCHKPILVAVNKVD 122 Query: 328 ----KSDLYSTYTEEYDHL--ISSFTGEGLEELINKIKSILSNK 365 ++D++ Y ++HL +SS G G EL++ + ++L K Sbjct: 123 SNNRRNDMHEFYALGFEHLYALSSVNGSGTGELLDDLVALLPVK 166 >gi|302670901|ref|YP_003830861.1| GTP-binding protein [Butyrivibrio proteoclasticus B316] gi|302395374|gb|ADL34279.1| GTP-binding protein [Butyrivibrio proteoclasticus B316] Length = 442 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 43/120 (35%), Positives = 64/120 (53%), Gaps = 6/120 (5%) Query: 189 SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVT 248 +K+ + D+L ++ SH S+ E + KI I+G N GKSS+ N L ++ IV+ Sbjct: 151 NKQGIGDLL---EEVVSHFSKSSTDEEEDDSVKIAIIGKPNVGKSSIINKLIGENRLIVS 207 Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305 DI GTTRD + + G DTAG+R + I +E I RT VE AD+ +L+ Sbjct: 208 DIAGTTRDAIDTPVKYNGKKYTFIDTAGLRRKNKIKDELEHYMIVRTVGAVERADVAILV 267 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 53/88 (60%), Gaps = 1/88 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + ++G N GKS+LFNALA +AIV D PG TRD + D++ + + DT GI ++ Sbjct: 7 VAVVGRPNVGKSTLFNALAGSRIAIVQDTPGVTRDRIYQDVEWLNHSFTLIDTGGIEPDS 66 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308 DI+ + + + ++ AD+I+ + ++ Sbjct: 67 KDIILAQMRDQAQIAIDTADVIIFMVDV 94 >gi|124025156|ref|YP_001014272.1| GTP-binding protein EngA [Prochlorococcus marinus str. NATL1A] gi|166225837|sp|A2C0J7|DER_PROM1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|123960224|gb|ABM75007.1| GTP-binding protein (HSR1-related) [Prochlorococcus marinus str. NATL1A] Length = 456 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 36/97 (37%), Positives = 56/97 (57%), Gaps = 3/97 (3%) Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 L E+ + ++ I+G N GKSSL N++ + AIV+ I GTTRD + + +G K+ Sbjct: 170 LDEVSDSPVQLAIIGRPNVGKSSLLNSICGETRAIVSSIRGTTRDTIDTRITHQGKEWKL 229 Query: 272 SDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305 DTAGIR + E GI R+F +E +D+ +L+ Sbjct: 230 VDTAGIRRRRSVNYGPEFFGINRSFKAIERSDVCVLV 266 Score = 43.1 bits (100), Expect = 0.090, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 31/61 (50%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+L N L + AIV D PG TRD D K+ DT G+ D Sbjct: 6 VAIIGRPNVGKSTLVNRLCQSREAIVHDEPGVTRDRTYQDGFWRDRDFKVVDTGGLVFDD 65 Query: 282 D 282 D Sbjct: 66 D 66 >gi|319936463|ref|ZP_08010879.1| GTP-binding protein engA [Coprobacillus sp. 29_1] gi|319808578|gb|EFW05130.1| GTP-binding protein engA [Coprobacillus sp. 29_1] Length = 435 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 34/85 (40%), Positives = 52/85 (61%), Gaps = 3/85 (3%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 I+G N GKSSL NAL ++ IV+DI GTTRD + + +G ++ DTAG+R+ + Sbjct: 179 IIGRPNVGKSSLTNALLGEERVIVSDIEGTTRDAIDTAFEKDGQKYRVIDTAGMRKKGKV 238 Query: 284 ---VEKEGIKRTFLEVENADLILLL 305 +EK I R VE +D++L++ Sbjct: 239 YENIEKYSILRALSAVEKSDVVLVV 263 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/95 (35%), Positives = 56/95 (58%), Gaps = 4/95 (4%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G +N GKS++FN + + V+IV DIPG TRD + + ++ DT GI E + Sbjct: 6 VAIVGRANVGKSTIFNRIVGERVSIVEDIPGVTRDRIYANASWLTRDFRLIDTGGI-ELE 64 Query: 282 DIVEKEGIK-RTFLEVENADLILLLKEINSKKEIS 315 D E IK + + +E AD+IL + +N ++ I+ Sbjct: 65 DASFTEQIKMQAEIAIEEADVILFV--VNGREGIT 97 >gi|167772322|ref|ZP_02444375.1| hypothetical protein ANACOL_03699 [Anaerotruncus colihominis DSM 17241] gi|167665425|gb|EDS09555.1| hypothetical protein ANACOL_03699 [Anaerotruncus colihominis DSM 17241] Length = 442 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 35/91 (38%), Positives = 54/91 (59%), Gaps = 3/91 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--E 279 I I+G N GKS+LFN LA ++IV D PG TRD + + + V + DT GI Sbjct: 6 IAIVGRPNVGKSTLFNKLAGARISIVEDTPGVTRDRVYYECEWRAKTVMLVDTGGIEPYS 65 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINS 310 TD I+ + ++ L +++AD+I+L+ +I S Sbjct: 66 TDKILSQMR-RQAQLAIDSADVIILVTDIQS 95 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/105 (33%), Positives = 61/105 (58%), Gaps = 5/105 (4%) Query: 205 SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL 264 +HI + E K+ ++G N GKSSL N +A ++ +IV+D+ GTTRD + ++ Sbjct: 163 AHIDFNRADEYGEEYVKVAVIGKPNVGKSSLVNRVAGEERSIVSDMAGTTRDAVDTVVEN 222 Query: 265 E-GYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305 E G V I DTAGIR + +E+ + R ++ V+ +D+ +++ Sbjct: 223 EYGRFVFI-DTAGIRRKSRVEEQIERYSVLRAYMAVDRSDVCVIM 266 >gi|45658262|ref|YP_002348.1| GTP-binding protein EngA [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|73919333|sp|Q72PQ1|DER_LEPIC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|45601504|gb|AAS70985.1| GTP-binding protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 489 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 57/89 (64%), Gaps = 3/89 (3%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR- 278 +++ I+G N+GKSSL NA+ + A+V+D+ GTTRD + L+ + ++DTAGIR Sbjct: 227 FRLAIVGKPNSGKSSLLNAICGYERAVVSDVAGTTRDSIDTLLEFGDRRLLLTDTAGIRK 286 Query: 279 --ETDDIVEKEGIKRTFLEVENADLILLL 305 +T + +E +RT +E++DL++ L Sbjct: 287 QSKTAEALEFYSYQRTIKAIESSDLVIHL 315 Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 38/98 (38%), Positives = 55/98 (56%), Gaps = 17/98 (17%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-----DLEGYLVKISDTAG 276 + I+G N GKS+LFN+L KK +AI D PG TRDVL+ + DL+ YL DT G Sbjct: 32 VSIVGRQNVGKSTLFNSLLKKKLAITEDYPGVTRDVLSARIYQEEKDLDFYLC---DTPG 88 Query: 277 IRETDDIVEKEGIKRTFLE-----VENADLILLLKEIN 309 + DI + + +T LE + +D+I+ L + N Sbjct: 89 L----DIENPDSLSQTILETAYGQLRESDVIVFLLDKN 122 >gi|34498989|ref|NP_903204.1| GTP-binding protein EngA [Chromobacterium violaceum ATCC 12472] gi|41017007|sp|Q7NS92|DER_CHRVO RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|34104839|gb|AAQ61196.1| probable GTP-binding protein [Chromobacterium violaceum ATCC 12472] Length = 469 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 55/88 (62%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 K ++G N GKS+L NA+ ++ I D GTTRD + ID + EG+ I DTAG+R Sbjct: 176 KFAVIGRPNVGKSTLVNAILGEERVIAFDQAGTTRDSIYIDFEREGHTYTIIDTAGVRRR 235 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305 + ++++EK + +T +E+A++ +L+ Sbjct: 236 AKVNEMLEKFSVIKTMKAIEDANVAVLV 263 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 33/91 (36%), Positives = 45/91 (49%), Gaps = 13/91 (14%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD--VLTIDLDLEGYLVKISDTAGIRE 279 + ++G N GKS+LFN L + A+V D PG TRD + + YLV DT G Sbjct: 5 VALVGRPNVGKSTLFNRLTRSRDALVADQPGLTRDRHYGQGRVGEKPYLV--VDTGGFEP 62 Query: 280 TDDIVEKEGI-----KRTFLEVENADLILLL 305 D EGI K+T V+ AD ++ L Sbjct: 63 VVD----EGILFEMAKQTLQAVDEADAVVFL 89 >gi|24214003|ref|NP_711484.1| GTP-binding protein EngA [Leptospira interrogans serovar Lai str. 56601] gi|73919334|sp|Q8F6K1|DER_LEPIN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|24194868|gb|AAN48502.1| GTP-binding protein EngA [Leptospira interrogans serovar Lai str. 56601] Length = 489 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 57/89 (64%), Gaps = 3/89 (3%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR- 278 +++ I+G N+GKSSL NA+ + A+V+D+ GTTRD + L+ + ++DTAGIR Sbjct: 227 FRLAIVGKPNSGKSSLLNAICGYERAVVSDVAGTTRDSIDTLLEFGDRRLLLTDTAGIRK 286 Query: 279 --ETDDIVEKEGIKRTFLEVENADLILLL 305 +T + +E +RT +E++DL++ L Sbjct: 287 QSKTAEALEFYSYQRTIKAIESSDLVIHL 315 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 35/94 (37%), Positives = 55/94 (58%), Gaps = 9/94 (9%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-----DLEGYLVKISDTAG 276 + I+G N GKS+LFN+L KK +AI D PG TRDVL+ + DL+ YL DT G Sbjct: 32 VSIVGRQNVGKSTLFNSLLKKKLAITEDYPGVTRDVLSARIYQEEKDLDFYLC---DTPG 88 Query: 277 IR-ETDDIVEKEGIKRTFLEVENADLILLLKEIN 309 + E D + + ++ + ++ +D+I+ L + N Sbjct: 89 LDIENPDSLSQTILETAYRQLRESDVIVFLLDKN 122 >gi|325661996|ref|ZP_08150615.1| GTP-binding protein engA [Lachnospiraceae bacterium 4_1_37FAA] gi|331085846|ref|ZP_08334929.1| GTP-binding protein engA [Lachnospiraceae bacterium 9_1_43BFAA] gi|325471659|gb|EGC74878.1| GTP-binding protein engA [Lachnospiraceae bacterium 4_1_37FAA] gi|330406769|gb|EGG86274.1| GTP-binding protein engA [Lachnospiraceae bacterium 9_1_43BFAA] Length = 442 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 41/121 (33%), Positives = 66/121 (54%), Gaps = 6/121 (4%) Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247 SS+ L D+L + +++H + E +I I+G N GKSS+ N L ++ IV Sbjct: 149 SSRLGLGDML---DAVAAHFPEHSAEEEEDERPRIAIVGKPNVGKSSIINKLVGENRVIV 205 Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILL 304 ++I GTTRD + ++ G DTAG+R + I +E+ I RT VE AD++L+ Sbjct: 206 SNIAGTTRDAIDTEITWNGKEYVFIDTAGLRRKNKIKEELERYSIIRTVTAVERADVVLV 265 Query: 305 L 305 + Sbjct: 266 V 266 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/93 (35%), Positives = 56/93 (60%), Gaps = 7/93 (7%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID---LDLEGYLVKISDTAGIR 278 + I+G N GKS+LFNALA + ++IV D PG TRD + + LD E L+ DT GI Sbjct: 6 VAIVGRPNVGKSTLFNALAGEMISIVKDTPGVTRDRIYAEVTWLDREFTLI---DTGGIE 62 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINS 310 ++ DI+ + ++ + ++ AD+I+ + ++ Sbjct: 63 PDSKDIILAQMREQAQIAIDTADVIIFITDVRQ 95 >gi|315646409|ref|ZP_07899527.1| GTP-binding protein EngA [Paenibacillus vortex V453] gi|315278052|gb|EFU41372.1| GTP-binding protein EngA [Paenibacillus vortex V453] Length = 440 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 35/102 (34%), Positives = 58/102 (56%), Gaps = 8/102 (7%) Query: 212 LGEIIRNGY-----KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266 L E+ +GY ++ ++G N GKSSL NA+ ++ IV+D+ GTTRD + + +G Sbjct: 164 LPELEDDGYDEDVIRVALIGRPNVGKSSLVNAILGEERVIVSDVAGTTRDAIDTPFEKDG 223 Query: 267 YLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305 + DTAG+R+ + EK + R +E AD++L+L Sbjct: 224 QRYVLIDTAGMRKRGKVYETTEKYSVMRAMRAIERADVVLVL 265 Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS++FN L +AIV D PG TRD + + G + DT GI + Sbjct: 6 VAIVGRPNVGKSTIFNRLIGDRLAIVEDKPGITRDRIYGSAEWNGKAFSVIDTGGIEIDG 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 DD++ K + L +E AD+I+ + Sbjct: 66 DDMILKSIRMQAELAIEEADVIVFM 90 >gi|222823547|ref|YP_002575121.1| predicted GTP-binding protein [Campylobacter lari RM2100] gi|254783143|sp|B9KFN5|DER_CAMLR RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|222538769|gb|ACM63870.1| conserved hypothetical protein, predicted GTP-binding protein [Campylobacter lari RM2100] Length = 461 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/97 (39%), Positives = 58/97 (59%), Gaps = 2/97 (2%) Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270 KL I N K+ I+G N GKSSL NAL K++ ++V+DI GTT D + + + +++ Sbjct: 188 KLKTINENHIKVGIIGRVNVGKSSLLNALVKEERSVVSDIAGTTIDPVNESIMHKDKIIE 247 Query: 271 ISDTAGIRETDDI--VEKEGIKRTFLEVENADLILLL 305 DTAGIR+ I +E+ + RT + NA + LL+ Sbjct: 248 FVDTAGIRKRGKIQGLERYALNRTEYALTNAQIALLV 284 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 32/85 (37%), Positives = 56/85 (65%), Gaps = 3/85 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I+++G N GKSSLFN LA+K +AI +DI GTTRD I++ ++G + D+ G+ E++ Sbjct: 4 IILIGKPNVGKSSLFNRLARKRIAITSDISGTTRDTNKIEVQIDGKKALLIDSGGLDESN 63 Query: 282 DIVEKEGIKRTFLE-VENADLILLL 305 ++ + +K L+ +N+D+I + Sbjct: 64 ELF--KNVKANSLKAAKNSDIIFYM 86 >gi|300871553|ref|YP_003786426.1| GTP-binding protein EngA [Brachyspira pilosicoli 95/1000] gi|300689254|gb|ADK31925.1| GTP-binding protein, EngA [Brachyspira pilosicoli 95/1000] Length = 489 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 34/90 (37%), Positives = 55/90 (61%), Gaps = 3/90 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G NAGKS+L N L KD +IV++I GTTRD + + +G + + DTAGIR+ Sbjct: 228 IAIVGKPNAGKSTLLNTLIGKDRSIVSNIAGTTRDSIDETFNFKGDDICLVDTAGIRKKK 287 Query: 282 DI---VEKEGIKRTFLEVENADLILLLKEI 308 ++ VE + R +E +D+ +L+ ++ Sbjct: 288 NVNTDVEYYSVNRAIKAIEASDVCILMLDV 317 Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust. Identities = 35/140 (25%), Positives = 68/140 (48%), Gaps = 8/140 (5%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKS+LFN A + +IV G TRD+ ++ + DT G+ + Sbjct: 4 IAILGRPNVGKSTLFNRFAGRRKSIVDPTAGVTRDISIAKTYIDDIAFNVFDTGGLLDMS 63 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSD------LYSTY 335 + V E ++ L+ + LLL +++ + + P + FI K + + Sbjct: 64 EDVLNEKVREKALKTATDEAHLLLFVVDAHQ--THPDDRHFINTIRKLNKPIILVINKID 121 Query: 336 TEEYDHLISSFTGEGLEELI 355 ++ +++LI+ F G+++++ Sbjct: 122 SDSHNNLINEFYSLGIKDIV 141 >gi|300854433|ref|YP_003779417.1| putative GTP-binding protein [Clostridium ljungdahlii DSM 13528] gi|300434548|gb|ADK14315.1| putative GTP-binding protein [Clostridium ljungdahlii DSM 13528] Length = 438 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 54/88 (61%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ +G N GKSSL N L ++ IV+DIPGTTRD + L+ + + + DTAG+R+ Sbjct: 178 KVAFIGKPNVGKSSLINKLLGEERVIVSDIPGTTRDAVDSYLETDYGKLLLIDTAGLRKK 237 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E+ + RT+ +E AD+ +L+ Sbjct: 238 SKVKEEIERYSVIRTYTAIERADVCVLI 265 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 33/85 (38%), Positives = 50/85 (58%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFN LA K ++IV D PG TRD + + + Y I DT GI E+ Sbjct: 6 VAIVGRPNVGKSTLFNKLAGKRISIVEDTPGVTRDRVYAEAEWLKYNFTIIDTGGIEPES 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 D++ + ++ + VE AD I+ + Sbjct: 66 TDVIISQMRRQAQVAVETADTIIFI 90 >gi|299115668|emb|CBN75868.1| MEngA, mitochondrial EngA GTPase [Ectocarpus siliculosus] Length = 629 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/133 (28%), Positives = 66/133 (49%), Gaps = 14/133 (10%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI--- 277 ++ ++G N GKSSL NA+ ++D A+ PG TRD + ++ G V++ DTAGI Sbjct: 323 QLALVGRPNVGKSSLLNAVLREDRALTGPTPGLTRDAVAVEWTWGGKAVRLVDTAGIRKS 382 Query: 278 --RETDDIVEKEGIKRTFLEVENADLILLL----KEINSKKEISFPKNI-----DFIFIG 326 R+T +E+ +K + + A +++L+ + + K E+S + + Sbjct: 383 GSRDTTTPLEELAVKDSMNAIHKAQVVVLVLDGSEGMLRKTELSIASMVATEGRALVVAA 442 Query: 327 TKSDLYSTYTEEY 339 KSDL EY Sbjct: 443 NKSDLSGVSPGEY 455 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/112 (32%), Positives = 58/112 (51%), Gaps = 13/112 (11%) Query: 207 ISQGKLGEIIRNG-YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE 265 + + L R G +++VI+G N GKS+L+N LA ++ AIVT I GTTRD + L Sbjct: 100 VKRPPLSAPARGGAFRVVIVGRPNVGKSTLYNRLATRNRAIVTPIAGTTRDRKESTVSLG 159 Query: 266 GYLVKISDTAGIRETDDIVEKEG------------IKRTFLEVENADLILLL 305 G +DT G+ + D K +K+T +E++D++L + Sbjct: 160 GMTFDFADTGGLEDGADEPWKGPPGTPHPGMPQVVLKKTEEAIEDSDIVLFM 211 >gi|257457196|ref|ZP_05622372.1| ribosome-associated GTPase EngA [Treponema vincentii ATCC 35580] gi|257445455|gb|EEV20522.1| ribosome-associated GTPase EngA [Treponema vincentii ATCC 35580] Length = 506 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I ++G N GKS+L N L K +IV+DI GTTRDV+ + +G I DTAGIR Sbjct: 239 RIALIGKPNTGKSTLSNYLTKTSASIVSDIAGTTRDVVEGEFFYKGRQFIIQDTAGIRRK 298 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E + R +ENAD++ L Sbjct: 299 TKVKEDIEYYSVVRAMKSLENADIVFHL 326 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/95 (35%), Positives = 52/95 (54%), Gaps = 6/95 (6%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET- 280 +VI G N GKS+LFN +K AI PG TRD + + G V++ DT G + T Sbjct: 62 VVIAGRPNVGKSTLFNRFLRKRRAITDPTPGVTRDPIEAQAIINGLPVRLMDTGGFKLTR 121 Query: 281 -----DDIVEKEGIKRTFLEVENADLILLLKEINS 310 DD++++ +++T + AD ILLL E ++ Sbjct: 122 SGDKNDDMMDELVVEKTQDALRRADKILLLLEASA 156 >gi|254693167|ref|ZP_05154995.1| GTP-binding protein EngA [Brucella abortus bv. 3 str. Tulya] gi|261213405|ref|ZP_05927686.1| GTP-binding protein engA [Brucella abortus bv. 3 str. Tulya] gi|260915012|gb|EEX81873.1| GTP-binding protein engA [Brucella abortus bv. 3 str. Tulya] Length = 483 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 79/165 (47%), Gaps = 24/165 (14%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G+ + I+G N GKS+LFN L + +A+V D+PG TRD D L ++ DTAG+ Sbjct: 2 GFTLAIVGRPNVGKSTLFNRLVGRKLALVDDLPGVTRDRRIHDAKLYDLKFQVIDTAGLE 61 Query: 279 E-TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF-----------IFIG 326 E +D +E +T + AD +L + I++K I+ P + F + + Sbjct: 62 EAANDSLEARMRAQTEAAISEADAVLFV--IDAKAGIT-PADSTFAEAVRRSGKPVVLVA 118 Query: 327 TKSDLYSTYTEEYDHL---------ISSFTGEGLEELINKIKSIL 362 K++ + YD IS+ G+G+ +L + I +L Sbjct: 119 NKAEARGSEAGMYDAFQLGLGEPCPISAEHGQGMPDLRDAIVELL 163 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 37/66 (56%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I I+G NAGKS+L N + +D + G TRD ++ D + G + + DTAG+R Sbjct: 213 RIAIVGRPNAGKSTLINTMLGEDRLLTGPEAGITRDSISADWEWHGRKINLFDTAGMRRK 272 Query: 281 DDIVEK 286 + EK Sbjct: 273 ARVQEK 278 >gi|161485612|ref|YP_386558.2| GTP-binding protein EngA [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 455 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 K+ +LG NAGKSSL NAL+ IV+D+ GTTRD + I ++L G DTAG+R Sbjct: 190 KLAMLGRPNAGKSSLVNALSGSRRMIVSDVAGTTRDSVDIAVELGGRRYVFVDTAGVRRR 249 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305 + D VE+ + + AD+ L++ Sbjct: 250 AKIQDPVERYSVNSSLKSTTKADVTLVV 277 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 25/53 (47%), Positives = 32/53 (60%), Gaps = 7/53 (13%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273 KI ++G N GKS+LFN L + + AI D PG TRD +EGY VK+ D Sbjct: 4 KIALIGRPNVGKSTLFNRLIRSNRAITHDRPGVTRD------RMEGY-VKVGD 49 >gi|86142085|ref|ZP_01060609.1| GTP-binding protein EngA [Leeuwenhoekiella blandensis MED217] gi|85831648|gb|EAQ50104.1| GTP-binding protein EngA [Leeuwenhoekiella blandensis MED217] Length = 433 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G NAGKSS NAL +D IVTDI GTTRD + + G+ + DTAGIR Sbjct: 175 RFAVVGRPNAGKSSFINALIGEDRYIVTDIAGTTRDAIDTKYNRFGFEFNLVDTAGIRRK 234 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E + R+ +E+ D+ LL+ Sbjct: 235 SKVKEDLEFYSVMRSVRAIEHCDVCLLV 262 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 + I+G N GKS+ FN L ++ AIV + G TRD D G + DT G +R + Sbjct: 4 VAIVGRPNVGKSTFFNRLIQRREAIVDSVSGVTRDRHYGKTDWNGKEFSVIDTGGYVRGS 63 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310 DDI E++ K+ L ++ AD I+ + ++ + Sbjct: 64 DDIFEEQIDKQVELAIDEADAIIFMVDVEA 93 >gi|293363486|ref|ZP_06610242.1| ribosome-associated GTPase EngA [Mycoplasma alligatoris A21JP2] gi|292552835|gb|EFF41589.1| ribosome-associated GTPase EngA [Mycoplasma alligatoris A21JP2] Length = 434 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 39/99 (39%), Positives = 60/99 (60%), Gaps = 5/99 (5%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 +K+ I+G NAGKSSL N LAK++ +IV++I GTTRD + +++ G I DTAGI + Sbjct: 171 FKLSIIGKPNAGKSSLLNNLAKENRSIVSEIAGTTRDSVKSIVEINGQKYNIIDTAGIMK 230 Query: 280 TDDIVEK---EGIKRTFLEVENADLILLLKEINSKKEIS 315 +VE + R + ADL L++ ++S +IS Sbjct: 231 KSRLVESVDHYALMRAMDSLNEADLSLII--VDSTSQIS 267 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 50/154 (32%), Positives = 78/154 (50%), Gaps = 19/154 (12%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+ FN L + V+IV D PG TRD L ++D G +K DT GI Sbjct: 4 KVAIIGKPNVGKSTFFNRLIGRKVSIVYDQPGVTRDRLYENVDWVGKQLKFIDTGGIEIE 63 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS----FPKNI------DFIFIGTKSD 330 + +++ + + +E AD+I+ L + EI+ F NI I + K + Sbjct: 64 NKPFQEQIQIQAKIAIEEADVIIFL--FDGTSEITNDDLFIMNILRKSNKHIITVANKLE 121 Query: 331 L-----YSTYTEEYDHL--ISSFTGEGLEELINK 357 YS Y DH+ IS+ GEG+ E++++ Sbjct: 122 SNQQFDYSWYKLGSDHIFAISALHGEGVGEVLDE 155 >gi|72383562|ref|YP_292917.1| GTP-binding protein EngA [Prochlorococcus marinus str. NATL2A] gi|123620367|sp|Q46H20|DER_PROMT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|72003412|gb|AAZ59214.1| Small GTP-binding protein protein domain:GTP-binding protein [Prochlorococcus marinus str. NATL2A] Length = 456 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 36/97 (37%), Positives = 56/97 (57%), Gaps = 3/97 (3%) Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 L E+ + ++ I+G N GKSSL N++ + AIV+ I GTTRD + + +G K+ Sbjct: 170 LDEVSDSPVQLAIIGRPNVGKSSLLNSICGETRAIVSSIRGTTRDTIDTRITHQGKEWKL 229 Query: 272 SDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305 DTAGIR + E GI R+F +E +D+ +L+ Sbjct: 230 VDTAGIRRRRSVNYGPEFFGINRSFKAIERSDVCVLV 266 Score = 43.1 bits (100), Expect = 0.092, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 31/61 (50%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+L N L + AIV D PG TRD D K+ DT G+ D Sbjct: 6 VAIIGRPNVGKSTLVNRLCQSREAIVHDEPGVTRDRTYQDGFWRDRDFKVVDTGGLVFDD 65 Query: 282 D 282 D Sbjct: 66 D 66 >gi|289522946|ref|ZP_06439800.1| ribosome-associated GTPase EngA [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503489|gb|EFD24653.1| ribosome-associated GTPase EngA [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 443 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 34/91 (37%), Positives = 58/91 (63%), Gaps = 3/91 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI I+G N GKSS+FN+L ++ AIV+++PGTTRD + ++ EG + DTAG+R+ Sbjct: 179 KISIVGRPNVGKSSIFNSLIGEERAIVSNLPGTTRDPIDTEITFEGKKYLLIDTAGLRKK 238 Query: 281 D---DIVEKEGIKRTFLEVENADLILLLKEI 308 D +E + R ++ +D++LL+ ++ Sbjct: 239 SRLKDDIEFYSLLRAERAIDRSDVVLLVLDV 269 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 37/93 (39%), Positives = 52/93 (55%), Gaps = 8/93 (8%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 RN + I+G +N GKS+LFN L +K +AIV DIPG TRD L ++ G + DT G Sbjct: 3 RNTNVVAIIGRANVGKSTLFNRLIQKRMAIVDDIPGVTRDRLYAQVEWAGKSFYLVDTGG 62 Query: 277 IRETD----DIVEKEGIKRTFLEVENADLILLL 305 D D+V K+ I R +E A +I+ + Sbjct: 63 FPNEDEPLFDLVGKQ-IDRA---IEEASVIIFV 91 >gi|122701405|emb|CAL88092.1| GTPase [Helicobacter pylori] Length = 170 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LAK+ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|300814694|ref|ZP_07094944.1| ribosome-associated GTPase EngA [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511167|gb|EFK38417.1| ribosome-associated GTPase EngA [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 439 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 53/88 (60%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSLFN L+K++ +IVT+I GTTRD + + + DTAG+R+ Sbjct: 177 RVSIIGKPNVGKSSLFNYLSKEERSIVTNIAGTTRDAIDTKISYKDNEYIFVDTAGLRKR 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 I VE+ + RT +E + + LLL Sbjct: 237 KKIKESVERYSVIRTLTAIERSSVCLLL 264 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 47/159 (29%), Positives = 74/159 (46%), Gaps = 19/159 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN + K ++I D PG TRD + Y + DT G+ D Sbjct: 6 VSIIGKPNVGKSTLFNKILGKKISITEDTPGVTRDRIYQTASWLDYSFLLVDTGGLDLKD 65 Query: 282 DIVEKEGIK-RTFLEVENADLILLLKE-----INSKKEIS---FPKNIDFIFIGTKSDLY 332 + + IK + + VE + +I+ L + + +EI+ N I K D Sbjct: 66 EDIFMSSIKAQVDIAVETSQVIIFLTDGIEGVSPTDREIANYLRKSNKKVILAVNKCDAK 125 Query: 333 STYTEEYD---------HLISSFTGEGLEELINKI-KSI 361 T YD +L+SS G GL +L++++ KSI Sbjct: 126 KTKENIYDFFELGLGEPYLVSSEQGTGLGDLLDEVTKSI 164 >gi|260173329|ref|ZP_05759741.1| putative GTP-binding protein, putative GTPase [Bacteroides sp. D2] gi|299149447|ref|ZP_07042504.1| GTP-binding protein [Bacteroides sp. 3_1_23] gi|315921602|ref|ZP_07917842.1| conserved hypothetical protein [Bacteroides sp. D2] gi|298512634|gb|EFI36526.1| GTP-binding protein [Bacteroides sp. 3_1_23] gi|313695477|gb|EFS32312.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 396 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 82/166 (49%), Gaps = 18/166 (10%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276 N I + G N+GKSSL NAL +D A+V+D PGTT D+++ ++++G DT G Sbjct: 10 NRLHIALFGRRNSGKSSLINALTGQDTALVSDTPGTTTDLVSKAMEIQGIGPCLFIDTPG 69 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL---------KEINS---KKEISFPKNIDFIF 324 + ++ E I RT +E D+ LLL KE+ + +K I ++ I Sbjct: 70 FDDEGELGELR-ISRTLKAIEKTDIALLLCGDTTFSHEKEMLALLKEKNIPVIPVLNKID 128 Query: 325 IGTKSDLYSTYTEE----YDHLISSFTGEGLEELINKIKSILSNKF 366 I SD +TY EE LIS+ G+E++ I L + F Sbjct: 129 IRENSDSLATYIEEECKIRPLLISAKEKTGIEQIRQAILEKLPSDF 174 >gi|329297578|ref|ZP_08254914.1| GTP-binding protein Der [Plautia stali symbiont] Length = 496 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 61/98 (62%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + +D +V D+PGTTRD + I ++ + + DTAG+R+ Sbjct: 209 KLAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMERDDREYILIDTAGVRKR 268 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D VEK + +T +E+A++++L+ I+++ IS Sbjct: 269 GKITDTVEKFSVIKTLQAIEDANVVMLV--IDARAGIS 304 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 49/84 (58%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG + DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFIVIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE +++ L +E AD++L L Sbjct: 65 EGVENRMAEQSLLAIEEADVVLFL 88 >gi|292806566|gb|ADE42413.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LAK+ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|317049132|ref|YP_004116780.1| ribosome-associated GTPase EngA [Pantoea sp. At-9b] gi|316950749|gb|ADU70224.1| ribosome-associated GTPase EngA [Pantoea sp. At-9b] Length = 496 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 61/98 (62%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + +D +V D+PGTTRD + I ++ + + DTAG+R+ Sbjct: 209 KLAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMERDDREYILIDTAGVRKR 268 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D VEK + +T +E+A++++L+ I+++ IS Sbjct: 269 GKITDTVEKFSVIKTLQAIEDANVVMLV--IDARAGIS 304 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 49/84 (58%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG + DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFIVIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE +++ L +E AD++L L Sbjct: 65 EGVENRMAEQSLLAIEEADVVLFL 88 >gi|325299810|ref|YP_004259727.1| GTP-binding protein engA [Bacteroides salanitronis DSM 18170] gi|324319363|gb|ADY37254.1| GTP-binding protein engA [Bacteroides salanitronis DSM 18170] Length = 437 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 53/88 (60%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G NAGKSSL NA ++ IVT+I GTTRD + D G+ + DTAGIR+ Sbjct: 177 RFAVVGRPNAGKSSLINAFVGEERNIVTEIAGTTRDSIYTRYDKFGFDFYLVDTAGIRKK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + + +E + R+ +EN+D+ +L+ Sbjct: 237 NKVNEDLEYYSVIRSIRAIENSDVCILM 264 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 36/93 (38%), Positives = 53/93 (56%), Gaps = 1/93 (1%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277 G + I+G N GKS+LFN L K AIV + GTTRD + +G + DT G + Sbjct: 2 GNLVAIVGRPNVGKSTLFNRLTKTRQAIVNEQAGTTRDRQYGKSEWQGKEFSVVDTGGWV 61 Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINS 310 +DDI E+E K+ L ++ AD+IL L ++ + Sbjct: 62 VNSDDIFEEEIRKQVILAMDEADVILFLVDVKN 94 >gi|317121946|ref|YP_004101949.1| ribosome-associated GTPase EngA [Thermaerobacter marianensis DSM 12885] gi|315591926|gb|ADU51222.1| ribosome-associated GTPase EngA [Thermaerobacter marianensis DSM 12885] Length = 455 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 49/84 (58%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN + ++ +AI D+PG TRD L D D G + DT G+ E D Sbjct: 5 VAIVGRPNVGKSTLFNRIIERRLAIEDDVPGVTRDRLYADTDWAGRAFTLVDTGGLAEGD 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 D + + ++ V AD+++++ Sbjct: 65 DPLTVQVRRQVEAAVREADVLVMV 88 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 54/192 (28%), Positives = 85/192 (44%), Gaps = 34/192 (17%) Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267 + G+ GEI + I+G N GKSSL N L ++ +V+DIPGTTRD + + Sbjct: 180 AWGEPGEI-----AVAIVGRPNVGKSSLVNRLLGEERVVVSDIPGTTRDAVDVLWRRGER 234 Query: 268 LVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLL-----KEINSKKEI---SF 316 + + DTAG+R D VE RT + AD+ L+ + K I + Sbjct: 235 VFRFIDTAGLRRKSRVKDDVEFYSTLRTQRALARADVACLVLDARDPATDQDKRIAGMAL 294 Query: 317 PKNIDFIFIGTKSDLYS-------TYTE----EYDHL-------ISSFTGEGLEELINKI 358 + + K DL + Y E EYD L +S+ TG+ ++ L+ I Sbjct: 295 EEGKACVLAVNKWDLVARGPDTADQYREALYREYDFLQFAPIVFLSALTGQRIDRLVEWI 354 Query: 359 KSILSNKFKKLP 370 + N +++P Sbjct: 355 GRVADNHRRQVP 366 >gi|122701401|emb|CAL88090.1| GTPase [Helicobacter pylori] gi|122701443|emb|CAL88111.1| GTPase [Helicobacter pylori] Length = 170 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LAK+ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|78184221|ref|YP_376656.1| GTP-binding protein EngA [Synechococcus sp. CC9902] gi|123581907|sp|Q3AZ65|DER_SYNS9 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|78168515|gb|ABB25612.1| Small GTP-binding protein domain [Synechococcus sp. CC9902] Length = 455 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSL NA+ + AIV+ I GTTRD + ++ E ++ DTAGIR Sbjct: 179 QMSIIGRPNVGKSSLLNAICGEQRAIVSPIRGTTRDTIDTNIVRENRPWRLVDTAGIRRR 238 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + E GI R+F +E +D+ +L+ Sbjct: 239 RSVNYGPEYFGINRSFKAIERSDVCVLV 266 Score = 43.9 bits (102), Expect = 0.045, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 31/61 (50%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+L N L + AIV D PG TRD D K+ DT G+ D Sbjct: 6 VAIIGRPNVGKSTLVNRLCRSREAIVHDQPGVTRDRTYQDGYWGDREFKVVDTGGLVFDD 65 Query: 282 D 282 D Sbjct: 66 D 66 >gi|306842332|ref|ZP_07474991.1| small GTP-binding protein [Brucella sp. BO2] gi|306287548|gb|EFM59007.1| small GTP-binding protein [Brucella sp. BO2] Length = 483 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 79/165 (47%), Gaps = 24/165 (14%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G+ + I+G N GKS+LFN L + +A+V D+PG TRD D L ++ DTAG+ Sbjct: 2 GFTLAIVGRPNVGKSTLFNRLVGRKLALVDDLPGVTRDRRIHDARLYDLKFQVIDTAGLE 61 Query: 279 E-TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF-----------IFIG 326 E +D +E +T + AD +L + I++K I+ P + F + + Sbjct: 62 EAANDSLEARMRAQTEAAISEADAVLFV--IDAKAGIT-PADSTFAEAVRRSGKPVVLVA 118 Query: 327 TKSDLYSTYTEEYDHL---------ISSFTGEGLEELINKIKSIL 362 K++ + YD IS+ G+G+ +L + I +L Sbjct: 119 NKAEARGSEAGMYDAFQLGLGEPCPISAEHGQGMPDLRDAIVELL 163 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 38/66 (57%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I I+G NAGKS+L N + +D + G TRD ++ D + G +K+ DTAG+R Sbjct: 213 RIAIVGRPNAGKSTLINTMLGEDRLLTGPEAGITRDSISADWEWHGRKIKLFDTAGMRRK 272 Query: 281 DDIVEK 286 + EK Sbjct: 273 ARVQEK 278 >gi|116071134|ref|ZP_01468403.1| GTP-binding protein EngA [Synechococcus sp. BL107] gi|116066539|gb|EAU72296.1| GTP-binding protein EngA [Synechococcus sp. BL107] Length = 455 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSL NA+ + AIV+ I GTTRD + ++ E ++ DTAGIR Sbjct: 179 QMSIIGRPNVGKSSLLNAICGEQRAIVSPIRGTTRDTIDTNIVRENRPWRLVDTAGIRRR 238 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + E GI R+F +E +D+ +L+ Sbjct: 239 RSVNYGPEYFGINRSFKAIERSDVCVLV 266 Score = 43.9 bits (102), Expect = 0.046, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 31/61 (50%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+L N L + AIV D PG TRD D K+ DT G+ D Sbjct: 6 VAIIGRPNVGKSTLVNRLCRSREAIVHDQPGVTRDRTYQDGYWGDREFKVVDTGGLVFDD 65 Query: 282 D 282 D Sbjct: 66 D 66 >gi|298373119|ref|ZP_06983109.1| ribosome-associated GTPase EngA [Bacteroidetes oral taxon 274 str. F0058] gi|298276023|gb|EFI17574.1| ribosome-associated GTPase EngA [Bacteroidetes oral taxon 274 str. F0058] Length = 438 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ ++G NAGKSSL NA + IVT+I GTTRD + + GY + DTAGIR+ Sbjct: 178 KLAVVGRPNAGKSSLVNAFLDDNRNIVTEIAGTTRDSIYTRYNKFGYDFYLVDTAGIRKK 237 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + VE + R +EN+D+ +L+ Sbjct: 238 AKVNEDVEYYSVIRAIRAIENSDVCVLM 265 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 1/88 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 + I+G N GKS+LFN L K AIV D GTTRD ++ G + DT G + + Sbjct: 5 VAIVGRPNVGKSTLFNRLTKSRRAIVNDEAGTTRDRHYGKVEWNGKEFSVIDTGGWVVGS 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308 +DI E+E ++ + +E AD+IL + ++ Sbjct: 65 EDIFEEEINRQVSIAIEEADVILFVVDV 92 >gi|304406963|ref|ZP_07388617.1| ribosome-associated GTPase EngA [Paenibacillus curdlanolyticus YK9] gi|304343950|gb|EFM09790.1| ribosome-associated GTPase EngA [Paenibacillus curdlanolyticus YK9] Length = 440 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 53/88 (60%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ ++G N GKSSL NA+ ++ IV+D+ GTTRD + + +G + DTAG+R+ Sbjct: 178 RVALIGRPNVGKSSLVNAILGEERVIVSDVAGTTRDAIDTPFEKDGQRYVLIDTAGMRKR 237 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + EK + R+ +E AD++L+L Sbjct: 238 GKVYETTEKYSVMRSLKAIERADVVLIL 265 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 I I+G N GKS++FN + +AIV D PG TRD + + G I DT GI + Sbjct: 6 IAIVGRPNVGKSTIFNRVIGDRLAIVEDKPGVTRDRIYGTGEWNGRAFSIVDTGGIEIDG 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 +D + K + L VE AD+I+ + Sbjct: 66 EDEIMKSVRMQAELAVEEADVIIFM 90 >gi|192362315|ref|YP_001981972.1| GTP-binding protein EngA [Cellvibrio japonicus Ueda107] gi|238692428|sp|B3PDM5|DER_CELJU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|190688480|gb|ACE86158.1| GTP-binding protein EngA [Cellvibrio japonicus Ueda107] Length = 466 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 63/119 (52%), Gaps = 8/119 (6%) Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249 + ++ D+L +I QG+ G KI I+G N GKS+L N L +D +V D Sbjct: 152 RSLMEDVLAEYPEIPEEEQQGEA-----TGIKIAIVGRPNVGKSTLVNRLLGEDRVVVYD 206 Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305 PGTTRD + I+ + DTAG+R +I VEK I +T + +A++++L+ Sbjct: 207 QPGTTRDSIYINYTRFDKPYTLIDTAGVRRRKNIDLAVEKFSIVKTMQAIADANVVILV 265 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 45/84 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L A+V D PG TRD + LE + DT GI + Sbjct: 5 IALVGRPNVGKSTLFNRLTNSRDALVADYPGLTRDRKYGEARLENRRFIVIDTGGISGEE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + ++ ++ L ++ AD++L + Sbjct: 65 EGIDSAMAGQSLLAIQEADIVLFI 88 >gi|122701379|emb|CAL88079.1| GTPase [Helicobacter pylori] Length = 170 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LAK+ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|86608739|ref|YP_477501.1| GTP-binding protein EngA [Synechococcus sp. JA-2-3B'a(2-13)] gi|123502588|sp|Q2JM09|DER_SYNJB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|86557281|gb|ABD02238.1| GTP-binding protein EngA [Synechococcus sp. JA-2-3B'a(2-13)] Length = 459 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 34/87 (39%), Positives = 51/87 (58%), Gaps = 3/87 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKSSL N L + AIV+ I GTTRD + + EG ++ DTAGIR+ + Sbjct: 181 VSIVGRPNVGKSSLLNRLVGSERAIVSPISGTTRDAIDTVVTWEGQPYRLIDTAGIRKKN 240 Query: 282 DI---VEKEGIKRTFLEVENADLILLL 305 + +E I R F ++ +D +LL+ Sbjct: 241 RVQYGIEFFSINRAFKAIQRSDAVLLV 267 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 36/61 (59%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+L N +A AIV D PG TRD L +++ G +++ DT G+ D Sbjct: 6 VAIVGRPNVGKSTLVNRMAGVRSAIVHDEPGVTRDRLYQEVEWNGRRLRVVDTGGLVFGD 65 Query: 282 D 282 D Sbjct: 66 D 66 >gi|122701465|emb|CAL88122.1| GTPase [Helicobacter pylori] Length = 170 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNCLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|218437880|ref|YP_002376209.1| GTP-binding protein EngA [Cyanothece sp. PCC 7424] gi|226741132|sp|B7KHD2|DER_CYAP7 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|218170608|gb|ACK69341.1| small GTP-binding protein [Cyanothece sp. PCC 7424] Length = 452 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 35/91 (38%), Positives = 51/91 (56%), Gaps = 3/91 (3%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 N K+ I+G N GKSSL NAL ++ AIV+ I GTTRD + + + ++ DTAGI Sbjct: 175 NEIKVAIVGRPNVGKSSLLNALTGENRAIVSPISGTTRDAIDMVVQRNEQQYRLIDTAGI 234 Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLL 305 R ++ E I R F + AD++L + Sbjct: 235 RRKKNVEYGAEFFSINRAFKAIRRADVVLFV 265 Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 31/61 (50%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+L N LA AIV D PG TRD + ++ DT G+ D Sbjct: 6 VAIIGRPNVGKSTLVNRLAGDQQAIVHDEPGITRDRTYRPAFWQDRDFQVVDTGGLVFDD 65 Query: 282 D 282 D Sbjct: 66 D 66 >gi|195952865|ref|YP_002121155.1| small GTP-binding protein [Hydrogenobaculum sp. Y04AAS1] gi|195932477|gb|ACG57177.1| small GTP-binding protein [Hydrogenobaculum sp. Y04AAS1] Length = 429 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 53/88 (60%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ +G N+GKSSL N++ K+D IV++I GTTRD + ++ EG + DTAGIR Sbjct: 173 KLSFVGKPNSGKSSLLNSILKQDRVIVSNIAGTTRDAVDVEFSYEGKDFILVDTAGIRRP 232 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 +I VE + R+ +E +D+ L+ Sbjct: 233 SNIDYGVEFFAVNRSLEAIEKSDVCALV 260 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 42/62 (67%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KIVI G +N GKS+LFN ++K+ ++IV +IPG TRDV+ + + K+ DT G+ ++ Sbjct: 3 KIVITGRANVGKSTLFNKISKRRISIVENIPGITRDVIESKAVFQDKVFKLVDTGGLTDS 62 Query: 281 DD 282 + Sbjct: 63 KE 64 >gi|153853314|ref|ZP_01994723.1| hypothetical protein DORLON_00710 [Dorea longicatena DSM 13814] gi|149754100|gb|EDM64031.1| hypothetical protein DORLON_00710 [Dorea longicatena DSM 13814] Length = 442 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSS+ N L K IV+D+ GTTRD + ++ G DTAG+R Sbjct: 179 RVAIVGKPNVGKSSIINKLTGKQRVIVSDVAGTTRDAIDTNVKYNGKDYVFIDTAGLRRK 238 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 I +E+ I RT VE AD++L++ Sbjct: 239 SKIKEELERYSIIRTVTAVERADVVLVV 266 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 52/88 (59%), Gaps = 1/88 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFN LA + ++IV D PG TRD + D+ + DT GI E+ Sbjct: 6 VAIVGRPNVGKSTLFNVLAGEMISIVKDTPGVTRDRIYADVTWLDKEFTMIDTGGIEPES 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308 DI+ + ++ + ++ AD+I+ + ++ Sbjct: 66 KDIILSQMREQAQIAIDTADVIIFITDV 93 >gi|144898965|emb|CAM75829.1| Small GTP-binding protein domain:GTP-binding [Magnetospirillum gryphiswaldense MSR-1] Length = 470 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 79/162 (48%), Gaps = 24/162 (14%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 + + I+G N GKS+LFN LA + +AIV D+PG TRD L G ++ DTAG + Sbjct: 3 FTVAIVGRPNVGKSTLFNRLAGRRLAIVHDMPGVTRDRREAAASLLGMEFRVIDTAGFED 62 Query: 280 T-DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF-----------IFIGT 327 D+ +E +T V AD++L+L I+++ ++ P + F I + Sbjct: 63 AHDESIEARMRYQTDTAVAEADVVLML--IDARAGVT-PLDAHFADYLRKQKTPVILVAN 119 Query: 328 KSD-------LYSTYTEEYDHLI--SSFTGEGLEELINKIKS 360 K + +Y +Y + S+ GEGL EL + ++ Sbjct: 120 KCEGKAGAPGMYESYGLGLGEPVPFSAEHGEGLAELFDALRP 161 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 41/181 (22%), Positives = 83/181 (45%), Gaps = 29/181 (16%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++VI+G N GKS+L N L +D + G TRD +++D +++ DTAG+R+ Sbjct: 201 QLVIVGRPNVGKSTLVNRLLGQDRMLTGPEAGLTRDAISVDWQHRDRGIRLVDTAGLRKR 260 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPKNI-----DFIFIGTKS 329 +D VEK T + A++++L+ + I K++++ + + + K Sbjct: 261 ANIEDPVEKLSASNTLEAIRMAEVVVLVMDSAAILDKQDLTIARMVVEEGRSLVIAINKW 320 Query: 330 DLYSTYTEEYDHL------------------ISSFTGEGLEELINKIKSILSNKFKKLPF 371 D E L IS+ TG G++++++ + ++ +++P Sbjct: 321 DAVEKPQEALQRLADRLETSLPMVRGLPTVTISALTGRGVDKMMDAVLAVHKTWNRRIPT 380 Query: 372 S 372 S Sbjct: 381 S 381 >gi|122701363|emb|CAL88071.1| GTPase [Helicobacter pylori] Length = 170 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LAK+ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|150026003|ref|YP_001296829.1| GTP-binding protein EngA [Flavobacterium psychrophilum JIP02/86] gi|166198714|sp|A6H103|DER_FLAPJ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|149772544|emb|CAL44027.1| GTP-binding protein EngA [Flavobacterium psychrophilum JIP02/86] Length = 436 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G NAGKSS NAL K+ +VTDI GTTRD + D G+ + DTAGIR Sbjct: 178 RFAVVGRPNAGKSSFINALIGKERFMVTDIAGTTRDSIDTKYDRFGFEFNLVDTAGIRRK 237 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E + R+ +E+AD+ +L+ Sbjct: 238 AKVKEDLEFYSVMRSVRAIEHADVCILI 265 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 1/88 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 + I+G N GKS+LFN L ++ AIV + G TRD + G + DT G IR + Sbjct: 5 VAIVGRPNVGKSTLFNRLIQRREAIVDSVSGVTRDRNYGKSEWNGKEFSVIDTGGYIRGS 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308 DDI E E K+ L ++ +D+I+ + ++ Sbjct: 65 DDIFEGEIRKQVELAIDESDVIIFVVDV 92 >gi|122702621|emb|CAL88500.1| GTPase [Helicobacter pylori] Length = 170 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 39/83 (46%), Positives = 55/83 (66%), Gaps = 3/83 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEV-ENADLIL 303 ++ KE IK L+V + +DLIL Sbjct: 69 ALLSKE-IKALNLKVAQMSDLIL 90 >gi|122700681|emb|CAL87929.1| GTPase [Helicobacter pylori] gi|122700687|emb|CAL87932.1| GTPase [Helicobacter pylori] Length = 170 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 51/159 (32%), Positives = 79/159 (49%), Gaps = 18/159 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEIS-----FPKNIDFIFIGTKSD--- 330 ++ KE + +DLIL + K I S +++ F N + + K D Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128 Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363 +S++ IS G+ LI+ I S+L+ Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSVLN 167 >gi|18075561|emb|CAD11176.1| GTP-binding protein [Helicobacter pylori] gi|122702801|emb|CAL88590.1| GTPase [Helicobacter pylori] Length = 170 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNCLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|84387629|ref|ZP_00990646.1| GTP-binding protein EngA [Vibrio splendidus 12B01] gi|84377474|gb|EAP94340.1| GTP-binding protein EngA [Vibrio splendidus 12B01] Length = 493 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 36/98 (36%), Positives = 60/98 (61%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I + + + DTAG+R Sbjct: 207 KLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMQRDEREYVLIDTAGVRRR 266 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 +I VEK + +T +E+A+++LLL I+++ IS Sbjct: 267 KNINETVEKFSVVKTLKAIEDANVVLLL--IDARDNIS 302 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD + + DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHFSEHDFIVIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE + +++ ++ AD++L + Sbjct: 65 EGVETKMAEQSLAAIDEADVVLFM 88 >gi|148979611|ref|ZP_01815616.1| GTP-binding protein EngA [Vibrionales bacterium SWAT-3] gi|145961696|gb|EDK26993.1| GTP-binding protein EngA [Vibrionales bacterium SWAT-3] Length = 493 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 36/98 (36%), Positives = 61/98 (62%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I + + + DTAG+R Sbjct: 207 KLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMSRDEREYVLIDTAGVRRR 266 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 +I VEK + +T VE+A+++LL+ I++++ IS Sbjct: 267 KNINETVEKFSVVKTLKAVEDANVVLLV--IDARENIS 302 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD L + + DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAQLGEHEFIVIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE + +++ ++ AD++L + Sbjct: 65 EGVETKMAEQSLAAIDEADVVLFM 88 >gi|122701557|emb|CAL88168.1| GTPase [Helicobacter pylori] gi|242255830|gb|ACS88899.1| GTPase [Helicobacter pylori] Length = 170 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 51/159 (32%), Positives = 79/159 (49%), Gaps = 18/159 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEIS-----FPKNIDFIFIGTKSD--- 330 ++ KE + +DLIL + K I S +++ F N + + K D Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128 Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363 +S++ IS G+ LI+ I S+L+ Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSVLN 167 >gi|122700597|emb|CAL87887.1| GTPase [Helicobacter pylori] Length = 170 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRDV + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDVNKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|331090851|ref|ZP_08339697.1| GTP-binding protein engA [Lachnospiraceae bacterium 2_1_46FAA] gi|330399710|gb|EGG79372.1| GTP-binding protein engA [Lachnospiraceae bacterium 2_1_46FAA] Length = 442 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 41/121 (33%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247 SS+ + D+L +++ H + E + +I I+G N GKSS+ N L + IV Sbjct: 149 SSRLGIGDML---DEVVKHFPETTAEEAEDDRPRIAIVGKPNVGKSSIINKLQGDNRVIV 205 Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILL 304 +DI GTTRD + + G DTAG+R + I +E+ I RT VE AD++L+ Sbjct: 206 SDIAGTTRDAIDTPITYNGKEYVFIDTAGLRRKNKIKEELERYSIIRTVTAVERADVVLI 265 Query: 305 L 305 + Sbjct: 266 V 266 Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 54/88 (61%), Gaps = 1/88 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFNALA + ++IV D PG TRD + +++ + DT GI ++ Sbjct: 6 VAIVGRPNVGKSTLFNALAGEMISIVKDTPGVTRDRIYAEVNWLDKEFTLIDTGGIEPDS 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308 DI+ + ++ + ++ AD+I+ L ++ Sbjct: 66 KDIILSQMREQAQIAIDTADVIIFLTDV 93 >gi|255994066|ref|ZP_05427201.1| ribosome-associated GTPase EngA [Eubacterium saphenum ATCC 49989] gi|255993734|gb|EEU03823.1| ribosome-associated GTPase EngA [Eubacterium saphenum ATCC 49989] Length = 441 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 48/132 (36%), Positives = 71/132 (53%), Gaps = 9/132 (6%) Query: 183 DVQNFSSKEVLN--DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 DVQ S+ +L D+L D ++ +Q L E I + ++G NAGKSSL N LA Sbjct: 142 DVQGVSAANMLGLGDVLDFIVD-NAPKAQTTLDEDI---LSVAVIGRPNAGKSSLLNYLA 197 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD---DIVEKEGIKRTFLEVE 297 ++ AIV+++ GTTRD + + +G I DTAGIR D VEK + R +E Sbjct: 198 SENRAIVSEMQGTTRDSIDEVVTYKGDRYNIIDTAGIRRKSKIGDAVEKFSVIRAISAIE 257 Query: 298 NADLILLLKEIN 309 D+ +L+ + N Sbjct: 258 RCDVCVLMIDAN 269 Score = 39.7 bits (91), Expect = 0.99, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 3/90 (3%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 N I+G N GKS+ FN L K ++IV D G TRD + + + + DT GI Sbjct: 3 NRVTAAIIGSPNTGKSTFFNKLIGKKLSIVHDERGVTRDRIYGYTQWRNHEILLIDTGGI 62 Query: 278 RETD--DIVEKEGIKRTFLEVENADLILLL 305 ETD D + ++ + +E AD+I+ L Sbjct: 63 -ETDSKDEMMTNIRQQADVAIELADVIIFL 91 >gi|225848630|ref|YP_002728793.1| GTP-binding protein EngA [Sulfurihydrogenibium azorense Az-Fu1] gi|225644538|gb|ACN99588.1| ribosome-associated GTPase EngA [Sulfurihydrogenibium azorense Az-Fu1] Length = 443 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 49/179 (27%), Positives = 89/179 (49%), Gaps = 33/179 (18%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G NAGKSSL NA+ ++ +V+DIPGTTRD + + + DTAGIR+ Sbjct: 182 KVAIVGKPNAGKSSLLNAILNEERVLVSDIPGTTRDTVDTLFEKDSQRFLFLDTAGIRKR 241 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKE-------------------------INSKK 312 + VE + R+ +E AD+++L+ + + +K Sbjct: 242 SKVEYGVEFFSVGRSIEAIEKADVVVLVIDAIIGATEQDQKIAGLIQRRYKPAVIVINKI 301 Query: 313 EISFPKNIDFIFIGTKSDLYSTYTEEYDHLI--SSFTGEGLEELINKIKSILSNKFKKL 369 ++ K+I+ + K LY +Y ++ S++ G+EEL+N+I + + +K++ Sbjct: 302 DMLKEKDIEKVIRQVKEKLYFL---DYAPIVLTSAYKKIGIEELLNQIVKVYNQVWKRV 357 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 1/87 (1%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 +++ I+G N GKSSLFN L K AIV DIPG TRD + + G ++ DT G Sbjct: 2 FRVAIVGRPNVGKSSLFNRLIGKRKAIVEDIPGVTRDRIISQTEWRGVKFEVVDTGGYIT 61 Query: 280 TDDIVEKEGIKRTF-LEVENADLILLL 305 +D+ I++ E++ ADL++ + Sbjct: 62 SDEDKFAPYIRKQVEKELQEADLLVFV 88 >gi|50122138|ref|YP_051305.1| GTP-binding protein EngA [Pectobacterium atrosepticum SCRI1043] gi|81827050|sp|Q6D280|DER_ERWCT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|49612664|emb|CAG76114.1| probable GTP-binding protein [Pectobacterium atrosepticum SCRI1043] Length = 495 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 49/84 (58%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG+ I DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGHEFIIIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 D VE ++ + +E AD++L + Sbjct: 65 DGVETRMAGQSLVAIEEADIVLFM 88 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 34/98 (34%), Positives = 61/98 (62%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I + + + DTAG+R+ Sbjct: 209 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMVRDEREYILIDTAGVRKR 268 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + VEK + +T +E+A+++LL+ I++++ IS Sbjct: 269 GKVTETVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 304 >gi|308182994|ref|YP_003927121.1| GTP-binding protein EngA [Helicobacter pylori PeCan4] gi|308065179|gb|ADO07071.1| GTP-binding protein EngA [Helicobacter pylori PeCan4] Length = 460 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 52/158 (32%), Positives = 77/158 (48%), Gaps = 18/158 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 11 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69 Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEIS-----FPKNIDFIFIGTKSD--- 330 ++ KE + +DLIL + K I S +++ F N + + K D Sbjct: 70 ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREIFKTNPNCFLVINKIDNDK 129 Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362 +S++ IS G+ LIN I S L Sbjct: 130 EKERAYAFSSFGMPKSFNISVSHNRGISALINAILSAL 167 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 61/231 (26%), Positives = 103/231 (44%), Gaps = 47/231 (20%) Query: 168 IRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227 + IE DLD E ++N + KE + E+I+ G I+G Sbjct: 169 LNQIIEQDLDADILESLENNAPKEETKE------------------EVIQVG----IIGR 206 Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI--VE 285 N GKSSL NAL KK+ ++V+ + GTT D + + + + DTAGIR I +E Sbjct: 207 VNVGKSSLLNALTKKERSLVSSMAGTTIDPIDETILIGDQKICFVDTAGIRHRGKILGIE 266 Query: 286 KEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDL-YSTYT 336 K + RT +E + + LL+ ++++ ++ ++ I I K D+ Y+ Y Sbjct: 267 KYALDRTQKALEKSHIALLVLDVSAPFVELDEKISSLADKHSLGIILILNKWDIRYAPYE 326 Query: 337 E------------EYDHLI--SSFTGEGLEELINKIKSILSNKFKKLPFSI 373 E EY +I S ++E+ +KI + K++P S+ Sbjct: 327 EIMAALKRKFRFLEYAPVITTSCLKARHIDEIKHKIIEVYECFSKRIPTSL 377 >gi|209527936|ref|ZP_03276422.1| small GTP-binding protein [Arthrospira maxima CS-328] gi|209491626|gb|EDZ91995.1| small GTP-binding protein [Arthrospira maxima CS-328] Length = 453 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSL N ++ AIV+ I GTTRD + ++ G ++ DTAGIR Sbjct: 178 RVAIVGRPNVGKSSLLNTFLGQERAIVSPISGTTRDAIDTIVEHNGNTYRLVDTAGIRRK 237 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + E GI R F + AD++L + Sbjct: 238 KHVEYGAEFFGINRAFKAIRRADVVLFV 265 Score = 40.8 bits (94), Expect = 0.42, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 30/61 (49%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+L N L + AIV D PG TRD + + DT G+ D Sbjct: 6 VAIIGRPNVGKSTLVNRLTQTQDAIVHDQPGMTRDRTYRSAYWQDREFTVVDTGGLVFDD 65 Query: 282 D 282 D Sbjct: 66 D 66 >gi|291460309|ref|ZP_06599699.1| ribosome-associated GTPase EngA [Oribacterium sp. oral taxon 078 str. F0262] gi|291417064|gb|EFE90783.1| ribosome-associated GTPase EngA [Oribacterium sp. oral taxon 078 str. F0262] Length = 441 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 53/90 (58%), Gaps = 1/90 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + ++G N GKS+LFN +A K ++IV D PG TRD + D + + + DT GI ++ Sbjct: 6 VAVVGRPNVGKSTLFNVIAGKQISIVKDTPGVTRDRIYADCEWLNHPFTLVDTGGIEPDS 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310 D++ + + L +E AD+IL + ++ S Sbjct: 66 RDVLLSQMRSQAELAIETADVILFVVDVRS 95 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 56/103 (54%), Gaps = 3/103 (2%) Query: 206 HISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE 265 H +G E + ++ ++G N GKSS+ N L ++ IV++I GTTRD + ++ + Sbjct: 164 HFPKGLEEEAEDDRIRVALIGKPNVGKSSMINKLLGENRVIVSEIAGTTRDAIDTEIVHD 223 Query: 266 GYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLL 305 G DTAG+R D +E+ + RT V+ AD+ ++L Sbjct: 224 GERYIFIDTAGLRRKGRVTDEIERYSVIRTVSAVDRADICVVL 266 >gi|121607080|ref|YP_994887.1| GTP-binding protein EngA [Verminephrobacter eiseniae EF01-2] gi|166225932|sp|A1WE12|DER_VEREI RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|121551720|gb|ABM55869.1| small GTP-binding protein [Verminephrobacter eiseniae EF01-2] Length = 468 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ + G N GKS+L N ++ + D PGTTRD +T+ + G ++ DTAG+R Sbjct: 200 RLAVAGRPNVGKSTLINTWLGEERLVAFDTPGTTRDAITVPFERNGQRFELVDTAGLRRK 259 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + VEK + +T +E+A ++LLL Sbjct: 260 GKVFAAVEKFSVVKTLQAIESAHVVLLL 287 Score = 37.7 bits (86), Expect = 3.8, Method: Compositional matrix adjust. Identities = 16/35 (45%), Positives = 23/35 (65%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 + ++G +N GKS+LFN L + A+V D G TRD Sbjct: 5 MALVGRANVGKSTLFNRLTRSRDALVADFAGLTRD 39 >gi|123965688|ref|YP_001010769.1| GTP-binding protein EngA [Prochlorococcus marinus str. MIT 9515] gi|166225838|sp|A2BV51|DER_PROM5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|123200054|gb|ABM71662.1| GTP-binding protein (HSR1-related) [Prochlorococcus marinus str. MIT 9515] Length = 458 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 35/85 (41%), Positives = 50/85 (58%), Gaps = 3/85 (3%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 I+G N GKSSL NA+ + AIV+DI GTT D + + +L KI DTAGIR ++ Sbjct: 182 IIGRPNVGKSSLLNAICGEKRAIVSDISGTTTDSIDTLIKKNSHLWKIVDTAGIRRKKNV 241 Query: 284 ---VEKEGIKRTFLEVENADLILLL 305 E GI R F ++ +D+ +L+ Sbjct: 242 KYGTEFFGINRAFKSIDRSDVCVLV 266 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 1/89 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 I I+G N GKS+L N L + + AIV D PG TRD + G ++ DT G + E Sbjct: 6 IAIIGRPNVGKSTLVNRLCQSNDAIVFDKPGVTRDRTYQNASWGGKEFQVVDTGGLVFED 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN 309 D E + FL +E A + L + + N Sbjct: 66 DSEFLPEIRTQVFLALEEASIALFVVDGN 94 >gi|122701349|emb|CAL88064.1| GTPase [Helicobacter pylori] Length = 170 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 39/83 (46%), Positives = 55/83 (66%), Gaps = 3/83 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEV-ENADLIL 303 ++ KE IK L+V + +DLIL Sbjct: 69 ALLSKE-IKALNLKVAQMSDLIL 90 >gi|122701597|emb|CAL88188.1| GTPase [Helicobacter pylori] Length = 170 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 51/159 (32%), Positives = 79/159 (49%), Gaps = 18/159 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEIS-----FPKNIDFIFIGTKSD--- 330 ++ KE + +DLIL + K I S +++ F N + + K D Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128 Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363 +S++ IS G+ LI+ I S+L+ Sbjct: 129 EKERVYAFSSFGMPKSFNISVSHNRGISALIDAILSVLN 167 >gi|225011402|ref|ZP_03701840.1| small GTP-binding protein [Flavobacteria bacterium MS024-2A] gi|225003905|gb|EEG41877.1| small GTP-binding protein [Flavobacteria bacterium MS024-2A] Length = 434 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G NAGKSS N+L KD IVTDI GTTRD + + G+ + DTAGIR Sbjct: 176 RFAVVGRPNAGKSSFINSLIGKDRYIVTDIAGTTRDSIDTQYNRFGFDFNLVDTAGIRRK 235 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E + R+ +E D+ LL+ Sbjct: 236 AKVKEDIEFYSVMRSVRAIEYCDVCLLV 263 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 1/88 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280 + I+G N GKS+ FN + +K AIV I G TRD D G + DT G E + Sbjct: 5 VAIVGRPNVGKSTFFNRMIQKREAIVDSISGVTRDRHYGKSDWNGRNFTLIDTGGYVEGS 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308 DDI +KE K+ L +E AD+I+ + ++ Sbjct: 65 DDIFQKEIDKQVNLAIEEADVIVFMVDV 92 >gi|161349991|ref|YP_175372.2| GTP-binding protein EngA [Bacillus clausii KSM-K16] Length = 437 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ ++G N GKSSL NAL ++ IV+ IPGTTRD + +G + DTAG+R+ Sbjct: 177 KMALIGRPNVGKSSLVNALLGEERVIVSQIPGTTRDAIDTSFTRDGQHYVVIDTAGMRKR 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + EK + R+ +E +D++L++ Sbjct: 237 GKVYEATEKYSVLRSLKAIERSDVVLVV 264 Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 28/94 (29%), Positives = 54/94 (57%), Gaps = 2/94 (2%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN + + VAIV D+PG TRD L + + + DT GI D Sbjct: 6 VAIVGRPNVGKSTIFNRIVGERVAIVEDLPGVTRDRLYSKGEWLNHEFYVIDTGGIELGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + + + ++ + ++ A++I+ + +N ++ I+ Sbjct: 66 EPLLVQMRQQAEIAIDEANVIIFM--VNGREGIT 97 >gi|29349244|ref|NP_812747.1| GTP-binding protein EngA [Bacteroides thetaiotaomicron VPI-5482] gi|253573091|ref|ZP_04850482.1| GTP-binding protein engA [Bacteroides sp. 1_1_6] gi|298384785|ref|ZP_06994344.1| ribosome-associated GTPase EngA [Bacteroides sp. 1_1_14] gi|37999664|sp|Q8A135|DER_BACTN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|29341152|gb|AAO78941.1| putative phosphoglycerate dehydrogenase [Bacteroides thetaiotaomicron VPI-5482] gi|251837314|gb|EES65414.1| GTP-binding protein engA [Bacteroides sp. 1_1_6] gi|298261929|gb|EFI04794.1| ribosome-associated GTPase EngA [Bacteroides sp. 1_1_14] Length = 437 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 53/88 (60%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G NAGKSS+ NA +D IVT+I GTTRD + + G+ + DTAGIR+ Sbjct: 177 RFAVVGRPNAGKSSIVNAFIGEDRNIVTEIAGTTRDSIYTRYNKFGFDFYLVDTAGIRKK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + + +E + R+ +ENAD+ +L+ Sbjct: 237 NKVNEDLEYYSVVRSIRSIENADVCILM 264 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 55/165 (33%), Positives = 78/165 (47%), Gaps = 22/165 (13%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 + I+G N GKS+LFN L K AIV + GTTRD + G + DT G + + Sbjct: 5 VAIVGRPNVGKSTLFNRLTKTRQAIVNEEAGTTRDRQYGKSEWLGREFSVVDTGGWVVNS 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI-NSKKEISFP-------KNIDFIFIGTKSD-- 330 DDI E+E K+ L VE AD+IL + ++ N ++ N I + K+D Sbjct: 65 DDIFEEEIRKQVLLAVEEADVILFVVDVMNGVTDLDMQVATILRRANSPVIMVANKTDNN 124 Query: 331 -LYSTYTEEYD------HLISSFTGEGLEELINKIKSILSNKFKK 368 L E Y + IS+ TG G +L++ I S KF K Sbjct: 125 ELQYNAPEFYKLGLGDPYCISAITGSGTGDLMDLIVS----KFNK 165 >gi|292806662|gb|ADE42461.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRDV + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDVNKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|213649668|ref|ZP_03379721.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 339 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 62/98 (63%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ + + DTAG+R+ Sbjct: 53 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRKR 112 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D VEK + +T +E+A+++LL+ I++++ IS Sbjct: 113 GKITDAVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 148 >gi|119953297|ref|YP_945506.1| GTP-binding protein EngA [Borrelia turicatae 91E135] gi|119862068|gb|AAX17836.1| GTP-binding protein [Borrelia turicatae 91E135] Length = 438 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 39/115 (33%), Positives = 63/115 (54%), Gaps = 9/115 (7%) Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 +FLKN S GKL KI ++G N+GKS+L N LA ++V+IV+ + GTTRD Sbjct: 162 IFLKN------SVGKLAIDDNVDVKIGLIGKPNSGKSTLINFLAGREVSIVSRVAGTTRD 215 Query: 257 VLTIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEI 308 + G ++ DTAGIR ++++E + R ++ D++ LL ++ Sbjct: 216 FVKARFQRNGKTFELIDTAGIRRRARVNELIEHYSVSRALRVIDMVDIVFLLVDV 270 Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust. Identities = 26/98 (26%), Positives = 52/98 (53%) Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 +G +++ ++I+G N GKS+LFN L + +I +I G TRD++ ++ Y + Sbjct: 2 IGSKVQDYKSVLIVGRPNVGKSTLFNKLLSSNRSITDEIYGVTRDLIKEICTVDSYKFYL 61 Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309 D G D + + + + +++ DLIL + ++N Sbjct: 62 IDAGGFTLLRDELSRVVVNKVISLLDSIDLILFVLDVN 99 >gi|308050453|ref|YP_003914019.1| ribosome-associated GTPase EngA [Ferrimonas balearica DSM 9799] gi|307632643|gb|ADN76945.1| ribosome-associated GTPase EngA [Ferrimonas balearica DSM 9799] Length = 495 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 55/88 (62%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G + DTAG+R Sbjct: 208 KLAIIGKPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRRR 267 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + VEK + +T +E+A+++LL+ Sbjct: 268 KSVYEAVEKFSVIKTLQAIEDANVVLLV 295 Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L A+V D PG TRD +L G+ + DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTGTRDALVADFPGLTRDRKYGQANLAGHDFIVVDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + +E + +++ +E AD++L L Sbjct: 65 EGIETKMAEQSLRAIEEADVVLFL 88 >gi|299473466|emb|CBN77863.1| PEngA, plastid EngA GTPase [Ectocarpus siliculosus] Length = 680 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 52/92 (56%), Gaps = 3/92 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKSSL N L + +IV+D+PGTTRD + + G ++ DTAGIR Sbjct: 400 VAIVGRPNVGKSSLLNRLFGETRSIVSDVPGTTRDSIDAMFERGGRTYRLVDTAGIRRKG 459 Query: 282 DI---VEKEGIKRTFLEVENADLILLLKEINS 310 + E + R F + AD++LL+ ++ + Sbjct: 460 KVDYGNEFFMVNRAFKAIRRADVVLLMVDVEA 491 Score = 39.7 bits (91), Expect = 0.96, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 5/89 (5%) Query: 222 IVILGHSNAGKSSLFNALAK--KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 + ++G N GKS++ N LAK KD +IV D G TRD G + DT G+ Sbjct: 222 VAVIGRPNVGKSTVVNRLAKRFKDGSIVFDESGVTRDRTYKRAWYCGKDFDVVDTGGLVF 281 Query: 280 TD---DIVEKEGIKRTFLEVENADLILLL 305 D D+ KE ++ + +E A ++++ Sbjct: 282 DDKGGDVFAKEIRQQALIALEEATAVIMV 310 >gi|285018364|ref|YP_003376075.1| GTP-binding protein enga [Xanthomonas albilineans GPE PC73] gi|283473582|emb|CBA16085.1| probable gtp-binding protein enga [Xanthomonas albilineans] Length = 465 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 53/88 (60%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 +I +G N GKS+L N L ++ I +D+PGTTRD + +DL+ + ++ DTAG+R Sbjct: 180 RIAFVGRPNVGKSTLVNRLLGEERMIASDVPGTTRDSIAVDLERDDRPYRLIDTAGLRRR 239 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305 ++ VEK + +T +E ++ +LL Sbjct: 240 GRVEEAVEKFSVFKTLQAIEQCEVAVLL 267 Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust. Identities = 18/35 (51%), Positives = 24/35 (68%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 + ++G N GKS+LFNAL + A+V D PG TRD Sbjct: 5 VALVGRPNVGKSTLFNALTRSRDALVHDQPGVTRD 39 >gi|122701495|emb|CAL88137.1| GTPase [Helicobacter pylori] Length = 170 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGVAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|229592437|ref|YP_002874556.1| GTP-binding protein EngA [Pseudomonas fluorescens SBW25] gi|229364303|emb|CAY52040.1| GTP-binding protein [Pseudomonas fluorescens SBW25] Length = 493 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 48/183 (26%), Positives = 83/183 (45%), Gaps = 31/183 (16%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 ++G KI I+G N GKS+L N + +D IV D PGTTRD + I + + DTAG Sbjct: 196 KDGIKIAIIGRPNVGKSTLVNRMLGEDRVIVYDEPGTTRDSIYIPFERNDEKYTLIDTAG 255 Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLLKEIN------------------------ 309 +R+ I VEK + +T +++A++++ + + Sbjct: 256 VRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDAREGVVDHDLNLLGFALEAGRALVIA 315 Query: 310 -SKKEISFPKNIDFIFIGTKSDLYSTYTEEYD-HLISSFTGEGLEELINKIKSILSNKFK 367 +K + P DF+ I + L+ + E D H IS+ G G+ L +++ + Sbjct: 316 INKWDGMTPSERDFVKIELQRRLF--FVEFADIHFISALHGTGVGNLYASVQNSFKSAVT 373 Query: 368 KLP 370 + P Sbjct: 374 RWP 376 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L + AIV D+ G TRD + +G I DT GI + Sbjct: 9 IALVGRPNVGKSTLFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYIIVDTGGISGDE 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++++ +++ L +E AD++L L Sbjct: 69 HGMDEKMAEQSLLAIEEADVVLFL 92 >gi|217967546|ref|YP_002353052.1| small GTP-binding protein [Dictyoglomus turgidum DSM 6724] gi|217336645|gb|ACK42438.1| small GTP-binding protein [Dictyoglomus turgidum DSM 6724] Length = 436 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ +G N+GKSSL NAL +D +IV++IPGTTRD + + D G I DT G+R Sbjct: 179 KLAFVGRPNSGKSSLLNALIGRDRSIVSEIPGTTRDAVDLIWDFNGKKYIIVDTPGLRRP 238 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E+ +++T + D+ +++ Sbjct: 239 AKVEEGLEELSVQKTLQTIRRIDIAIMV 266 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 57/180 (31%), Positives = 86/180 (47%), Gaps = 35/180 (19%) Query: 216 IRNGYKIV-ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274 ++ G +V I+G N GKS LFN + ++ AIV D PG TRD L + EG + D+ Sbjct: 1 MKKGVPVVSIVGRPNVGKSVLFNRIVGEEKAIVADEPGVTRDPLVHLCEHEGKYFYLVDS 60 Query: 275 AGIRETDDIVEKEGIKRTFLEVEN-ADLILLLKEINSKKEISFPKNIDFIFI------GT 327 AG TDD+ E I+ EV N +DLIL + ++ + E++ +D F+ G Sbjct: 61 AGWGLTDDL--SELIQEKIQEVINISDLILFV--VDGRSELT---ALDHEFVDILRKSGK 113 Query: 328 KSDLYSTYTE---EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS-HKRHLYHL 383 + L E + + ++ FT GL E PF I + HK++LY L Sbjct: 114 RVILVVNKMEGRIDREEYLAPFTALGLGE----------------PFPISALHKQNLYEL 157 >gi|213585218|ref|ZP_03367044.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 330 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 62/98 (63%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ + + DTAG+R+ Sbjct: 44 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRKR 103 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D VEK + +T +E+A+++LL+ I++++ IS Sbjct: 104 GKITDAVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 139 >gi|167758361|ref|ZP_02430488.1| hypothetical protein CLOSCI_00701 [Clostridium scindens ATCC 35704] gi|167664258|gb|EDS08388.1| hypothetical protein CLOSCI_00701 [Clostridium scindens ATCC 35704] Length = 442 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 36/87 (41%), Positives = 50/87 (57%), Gaps = 3/87 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKSS+ N L + IV+DI GTTRD + D+ G DTAG+R + Sbjct: 180 IAIVGKPNVGKSSIINKLLGEQRVIVSDIAGTTRDAIDTDIVYNGKEYVFIDTAGLRRKN 239 Query: 282 DI---VEKEGIKRTFLEVENADLILLL 305 I +E+ I RT VE AD++L++ Sbjct: 240 KIKEELERYSIIRTVTAVERADVVLIV 266 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 52/88 (59%), Gaps = 1/88 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFN LA ++IV D PG TRD + D++ + DT GI E+ Sbjct: 6 VAIVGRPNVGKSTLFNVLAGGMISIVKDTPGVTRDRIYADVNWLDKDFTLIDTGGIEPES 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308 DI+ + ++ + ++ AD+I+ + ++ Sbjct: 66 KDIILSQMREQAQIAIDTADVIIFITDV 93 >gi|169334783|ref|ZP_02861976.1| hypothetical protein ANASTE_01189 [Anaerofustis stercorihominis DSM 17244] gi|169257521|gb|EDS71487.1| hypothetical protein ANASTE_01189 [Anaerofustis stercorihominis DSM 17244] Length = 439 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 40/110 (36%), Positives = 57/110 (51%), Gaps = 3/110 (2%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L +++ H + K G KI ++G NAGKSSL N L ++ IV++I GTTRD + Sbjct: 156 LLDEVVKHFPENKKGVEEEERTKIAVVGKPNAGKSSLVNTLLGENRVIVSNISGTTRDAI 215 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305 + EG + DTAGIR I +E R +E AD+ LL+ Sbjct: 216 DTIFNYEGKNYTLIDTAGIRRKAKIYDDIEHYSTIRAIGAIERADICLLM 265 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 53/85 (62%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + ++G N GKS+LFN ++ K ++IV D PG TRD + D G + DT GI ++ Sbjct: 6 VALIGRPNTGKSTLFNKISGKRISIVEDTPGVTRDRIITDTSWSGNSFFLIDTGGIEPKS 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 DD++ K+ ++ L ++ AD+I+L+ Sbjct: 66 DDVILKQMKRQANLAIDMADVIVLV 90 >gi|77362053|ref|YP_341627.1| GTP-binding protein EngA [Pseudoalteromonas haloplanktis TAC125] gi|123744148|sp|Q3ICZ9|DER_PSEHT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|76876964|emb|CAI89181.1| GTP-binding protein, essential for cell growth in E. coli and B. subtilis, regulates ribosome synthesis [Pseudoalteromonas haloplanktis TAC125] Length = 487 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 49/84 (58%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L + A+V D PG TRD + +GY + DT GI ++ Sbjct: 5 IALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQANYDGYEFIVVDTGGIDGSE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + +E E ++ L +E AD++L L Sbjct: 65 EGIEIEMADQSLLAIEEADIVLFL 88 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 50/176 (28%), Positives = 92/176 (52%), Gaps = 20/176 (11%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 K+ I+G N GKS+L N + ++ IV D+PGTTRD + I + + DTAG+R Sbjct: 202 KLAIIGRPNVGKSTLTNRILGEERVIVYDMPGTTRDSIYIPMTRNDKEYILIDTAGVRKR 261 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTE 337 + D+VEK + +T +E+ +++LL+ ++++ IS + D +G + + Sbjct: 262 KKVSDVVEKFSVIKTLQAIEDCNVVLLV--VDARAGIS---DQDLSLLGFALNSGRSL-- 314 Query: 338 EYDHLISSFTGEGLEELI-NKIKSILSNK-----FKKLPFSIPSHKRHLYHLSQTV 387 +I+ +GL++ + ++IKS L + F +L F H + HL ++V Sbjct: 315 ----VIAVNKWDGLDDYVKDRIKSELDRRLGFIDFARLHFISALHGTGVGHLFESV 366 >gi|323343319|ref|ZP_08083546.1| ribosome-associated GTPase EngA [Prevotella oralis ATCC 33269] gi|323095138|gb|EFZ37712.1| ribosome-associated GTPase EngA [Prevotella oralis ATCC 33269] Length = 458 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G N GKSS+ NA +D IVT+I GTTRD + D G+ + DTAGIR Sbjct: 198 RFAVVGRPNVGKSSIINAFIGEDRNIVTEIAGTTRDSIYTRFDKFGFDFYLVDTAGIRRK 257 Query: 281 DDIVEK---EGIKRTFLEVENADLILLL 305 + + E + R+ +EN+D+ +L+ Sbjct: 258 NKVTEDLEFYSVMRSIRSIENSDVCILM 285 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 73/161 (45%), Gaps = 22/161 (13%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 + I+G N GKS+LFN L + AIV+D GTTRD + G + DT G + + Sbjct: 26 VAIVGRPNVGKSTLFNRLTQSRKAIVSDTAGTTRDRQYGKCNWNGREFSVVDTGGWVVNS 85 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332 DDI E ++ + E AD+++ L + + +I + + + K D Sbjct: 86 DDIFEDAIRRQVLVATEEADIVIFLVDTMTGVTDWDEDVAQILRRSKLPVLLVANKVDNS 145 Query: 333 STYTEEYDHL---------ISSFTGEG----LEELINKIKS 360 S Y + D +S+ TG G L+ LI K+K+ Sbjct: 146 SDYYQAADFYRLGLGDPVCVSAATGGGTGDLLDLLITKLKT 186 >gi|225572013|ref|ZP_03780877.1| hypothetical protein RUMHYD_00307 [Blautia hydrogenotrophica DSM 10507] gi|225040546|gb|EEG50792.1| hypothetical protein RUMHYD_00307 [Blautia hydrogenotrophica DSM 10507] Length = 441 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI ++G N GKSSL N L ++ IV+DI GTTRD + + +G DTAG+R Sbjct: 179 KIAVVGKPNVGKSSLINKLVGEERVIVSDIAGTTRDAIDTKVKWQGREYVFIDTAGLRRK 238 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 I +E+ + RT VE A++++++ Sbjct: 239 GKIKEEIERYSVIRTVTAVERANVVVIM 266 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 54/90 (60%), Gaps = 1/90 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFN LA ++++IV D PG TRD + ++ + DT GI ++ Sbjct: 6 VAIVGRPNVGKSTLFNVLAGENISIVKDTPGVTRDRIYAEVTWLDKSFTMIDTGGIEPDS 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310 +DI+ + ++ + ++ AD+I+ L ++ Sbjct: 66 NDIILSQMREQAQIAIDTADVIVFLVDVRQ 95 >gi|122701381|emb|CAL88080.1| GTPase [Helicobacter pylori] Length = 170 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 39/83 (46%), Positives = 55/83 (66%), Gaps = 3/83 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEV-ENADLIL 303 ++ KE IK L+V + +DLIL Sbjct: 69 ALLSKE-IKALNLKVAQMSDLIL 90 >gi|242255840|gb|ACS88904.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHKVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|213028788|ref|ZP_03343235.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 365 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 62/98 (63%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ + + DTAG+R+ Sbjct: 79 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRKR 138 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D VEK + +T +E+A+++LL+ I++++ IS Sbjct: 139 GKITDAVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 174 >gi|122701629|emb|CAL88204.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 39/83 (46%), Positives = 55/83 (66%), Gaps = 3/83 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEV-ENADLIL 303 ++ KE IK L+V + +DLIL Sbjct: 69 ALLSKE-IKSLNLKVAQMSDLIL 90 >gi|122701425|emb|CAL88102.1| GTPase [Helicobacter pylori] gi|122701427|emb|CAL88103.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 51/159 (32%), Positives = 79/159 (49%), Gaps = 18/159 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEIS-----FPKNIDFIFIGTKSD--- 330 ++ KE + +DLIL + K I S +++ F N + + K D Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128 Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363 +S++ IS G+ LI+ I S+L+ Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSVLN 167 >gi|56909884|dbj|BAD64411.1| EngA subfamily GTP-binding protein [Bacillus clausii KSM-K16] Length = 439 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ ++G N GKSSL NAL ++ IV+ IPGTTRD + +G + DTAG+R+ Sbjct: 179 KMALIGRPNVGKSSLVNALLGEERVIVSQIPGTTRDAIDTSFTRDGQHYVVIDTAGMRKR 238 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + EK + R+ +E +D++L++ Sbjct: 239 GKVYEATEKYSVLRSLKAIERSDVVLVV 266 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/94 (29%), Positives = 54/94 (57%), Gaps = 2/94 (2%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN + + VAIV D+PG TRD L + + + DT GI D Sbjct: 8 VAIVGRPNVGKSTIFNRIVGERVAIVEDLPGVTRDRLYSKGEWLNHEFYVIDTGGIELGD 67 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + + + ++ + ++ A++I+ + +N ++ I+ Sbjct: 68 EPLLVQMRQQAEIAIDEANVIIFM--VNGREGIT 99 >gi|325280073|ref|YP_004252615.1| GTP-binding protein engA [Odoribacter splanchnicus DSM 20712] gi|324311882|gb|ADY32435.1| GTP-binding protein engA [Odoribacter splanchnicus DSM 20712] Length = 435 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 36/88 (40%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I I+G N GKSS NAL ++ IVTDI GTTRD L + GY + DTAG+R+ Sbjct: 177 RITIVGRPNVGKSSTINALIGEERNIVTDIAGTTRDTLNTRYNRFGYDFLLVDTAGLRKK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + VE + R+ +E +D+ +LL Sbjct: 237 AKVSEDVEFYSVMRSIRAIEESDVCILL 264 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 71/167 (42%), Gaps = 37/167 (22%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 + I+G N GKS+LFN L AIV + G TRD G + DT G + + Sbjct: 5 VAIVGRPNVGKSTLFNRLVGTRKAIVNEESGVTRDRNYGKSSWNGKDFSVIDTGGYVSNS 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI----------------NSKKEISFPKN----- 319 DDI E+E K+ L ++ AD+IL + + N K + N Sbjct: 65 DDIFEEEINKQVILALDEADVILFMVDAEIGVTDLDQNFARLLRNIDKPVYLVANKVDNH 124 Query: 320 ------IDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKS 360 DF +G K DL+ ISS +G G +L++++ S Sbjct: 125 ERLYEAQDFYRLGIKGDLFC---------ISSVSGSGTGDLLDQVVS 162 >gi|302335702|ref|YP_003800909.1| ribosome-associated GTPase EngA [Olsenella uli DSM 7084] gi|301319542|gb|ADK68029.1| ribosome-associated GTPase EngA [Olsenella uli DSM 7084] Length = 439 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 33/87 (37%), Positives = 53/87 (60%), Gaps = 3/87 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKSSL N LA+++ +IV D+ GTTRD + I + +G + DTAG+R+ + Sbjct: 181 VAIIGRPNVGKSSLTNRLARRERSIVADVAGTTRDAVDITIAWKGQRFCLVDTAGMRKRN 240 Query: 282 DI---VEKEGIKRTFLEVENADLILLL 305 + VE + R ++ AD+ LL+ Sbjct: 241 QVHEDVEYYSLVRGLEAMDRADVCLLV 267 Score = 37.4 bits (85), Expect = 4.7, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 2/86 (2%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--E 279 + ++G N GKS+L N LA AIV + G TRD D G + DT GI Sbjct: 6 VAVVGRPNVGKSTLVNRLAVNRDAIVHESRGVTRDRSYHACDWNGREFVLIDTGGIESAR 65 Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305 + D+ ++ + + AD I+ + Sbjct: 66 SKDVFAPRIREQALVACDEADAIIFV 91 >gi|261406031|ref|YP_003242272.1| GTP-binding protein EngA [Paenibacillus sp. Y412MC10] gi|329929734|ref|ZP_08283410.1| ribosome biogenesis GTPase Der [Paenibacillus sp. HGF5] gi|261282494|gb|ACX64465.1| ribosome-associated GTPase EngA [Paenibacillus sp. Y412MC10] gi|328935712|gb|EGG32173.1| ribosome biogenesis GTPase Der [Paenibacillus sp. HGF5] Length = 440 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ ++G N GKSSL NA+ ++ IV+D+ GTTRD + + +G + DTAG+R+ Sbjct: 178 RVALIGRPNVGKSSLVNAILGEERVIVSDVAGTTRDAIDTPFEKDGQRYVLIDTAGMRKR 237 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + EK + R +E AD++L+L Sbjct: 238 GKVYETTEKYSVMRAMRAIERADVVLVL 265 Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS++FN L +AIV D PG TRD + + G + DT GI + Sbjct: 6 VAIVGRPNVGKSTIFNRLIGDRLAIVEDKPGITRDRIYGSAEWNGKAFSVIDTGGIEIDG 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 DD++ K + L +E AD+I+ + Sbjct: 66 DDMILKSIRMQAELAIEEADVIVFM 90 >gi|122700695|emb|CAL87936.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 51/159 (32%), Positives = 79/159 (49%), Gaps = 18/159 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEIS-----FPKNIDFIFIGTKSD--- 330 ++ KE + +DLIL + K I S +++ F N + + K D Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128 Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363 +S++ IS G+ LI+ I S+L+ Sbjct: 129 EKERSYAFSSFGMPKSFNISVSHNRGISTLIDAILSVLN 167 >gi|332982413|ref|YP_004463854.1| ribosome-associated GTPase EngA [Mahella australiensis 50-1 BON] gi|332700091|gb|AEE97032.1| ribosome-associated GTPase EngA [Mahella australiensis 50-1 BON] Length = 437 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 75/155 (48%), Gaps = 18/155 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFN L + ++IV D PG TRD + D++ G + + DT GI Sbjct: 6 VAIIGRPNVGKSTLFNRLVGRRISIVDDTPGITRDRIYADVEWTGKIFSLVDTGGIDFSG 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLY 332 D + + I++ ++ AD+ILL+ + N +I N + + K D + Sbjct: 66 KDSIVNQMIRQAQYAIDTADVILLVVDANEGMTSADEEVADILRRSNKSVLLVCNKVDNF 125 Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKI 358 + YD IS+ G G+ +L++KI Sbjct: 126 NRKDLLYDFYKLGLGDPIPISAGNGLGIGDLLDKI 160 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 54/88 (61%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 +I ++G NAGKSS+ N L ++ IV+D PGTTRD + + ++ EG + DTAG+R Sbjct: 177 RIAVIGKPNAGKSSIVNRLLGQERVIVSDQPGTTRDAIDVLIEHEGDRYILIDTAGLRRK 236 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305 + ++ VE+ + R V+ +D+ L+ Sbjct: 237 AKINEAVERYSVSRALEAVQRSDVAALV 264 >gi|317453527|emb|CBL87873.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 4/102 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKQKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI 320 ++ KE + +DLIL + K I S ++I + I Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREI 110 >gi|297623927|ref|YP_003705361.1| ribosome-associated GTPase EngA [Truepera radiovictrix DSM 17093] gi|297165107|gb|ADI14818.1| ribosome-associated GTPase EngA [Truepera radiovictrix DSM 17093] Length = 439 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 29/62 (46%), Positives = 37/62 (59%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSL NAL + IV D+PGTTRD + + D G + DTAGIR Sbjct: 176 RVAIIGRPNVGKSSLLNALVGDERVIVADVPGTTRDSVDVRFDFGGRPFVLIDTAGIRRK 235 Query: 281 DD 282 D Sbjct: 236 PD 237 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 33/73 (45%), Positives = 43/73 (58%), Gaps = 5/73 (6%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV--LTIDLDLEGYLVKISDTAGIR 278 K+ I+G N GKSSLFN L + AIV D+PG TRDV ++ DL G + DT G+ Sbjct: 3 KVAIVGRPNVGKSSLFNRLVGRREAIVADMPGVTRDVKEARVEDDL-GRSFTLLDTGGLW 61 Query: 279 ETDDIVEKEGIKR 291 D+ +E IKR Sbjct: 62 SNDEW--QEPIKR 72 >gi|149190086|ref|ZP_01868363.1| GTP-binding protein EngA [Vibrio shilonii AK1] gi|148836116|gb|EDL53076.1| GTP-binding protein EngA [Vibrio shilonii AK1] Length = 494 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 61/98 (62%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I + + + DTAG+R Sbjct: 206 KLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMQRDDREYVLIDTAGVRRR 265 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 ++ VEK + +T VE+A+++LL+ I++++ IS Sbjct: 266 RRINETVEKFSVVKTLKAVEDANVVLLV--IDARENIS 301 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD L + + DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE + +++ ++ AD++L L Sbjct: 65 EGVETKMAEQSLAAIDEADVVLFL 88 >gi|122701621|emb|CAL88200.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGVAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122700827|emb|CAL88002.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 39/83 (46%), Positives = 55/83 (66%), Gaps = 3/83 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEV-ENADLIL 303 ++ KE IK L+V + +DLIL Sbjct: 69 ALLSKE-IKALNLKVAQMSDLIL 90 >gi|121593586|ref|YP_985482.1| GTP-binding protein EngA [Acidovorax sp. JS42] gi|166224299|sp|A1W581|DER_ACISJ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|120605666|gb|ABM41406.1| small GTP-binding protein [Acidovorax sp. JS42] Length = 447 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 29/92 (31%), Positives = 54/92 (58%), Gaps = 3/92 (3%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 +N ++ + G N GKS+L N ++ + D+PGTTRD +++ + G ++ DTAG Sbjct: 177 KNVIRLAVAGRPNVGKSTLINTWLGEERLVAFDMPGTTRDAISVPFERNGQKFELIDTAG 236 Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLL 305 +R + +EK + +T +E+A+++LLL Sbjct: 237 LRRKGKVFEAIEKFSVVKTLQAIESANVVLLL 268 Score = 40.0 bits (92), Expect = 0.76, Method: Compositional matrix adjust. Identities = 19/35 (54%), Positives = 22/35 (62%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 I ++G N GKS+LFN L K AIV D G TRD Sbjct: 5 IALVGRPNVGKSTLFNRLTKSRDAIVADFAGLTRD 39 >gi|62185493|ref|YP_220278.1| GTP-binding protein EngA [Chlamydophila abortus S26/3] gi|81312359|sp|Q5L4W4|DER_CHLAB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|62148560|emb|CAH64331.1| putative GTP-binding protein [Chlamydophila abortus S26/3] Length = 474 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 50/163 (30%), Positives = 84/163 (51%), Gaps = 26/163 (15%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RE 279 +I ILG N GKSSLFN + K+ +AIV GTTRD L ++ G V++ DT G+ ++ Sbjct: 3 RIAILGRPNVGKSSLFNRMCKRSLAIVNSQEGTTRDRLYGEIRGWGIPVQVIDTGGVDKD 62 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINS---------KKEISFPKNIDFIFIGTKSD 330 ++D +K K+ AD++LL+ +I K++ + K I + K+D Sbjct: 63 SEDHFQKHIYKQALAGANEADILLLVIDIRCGITELDAEIAKQLLYLKK-PLILVANKAD 121 Query: 331 LYSTYTEEYD-H-----------LISSFTGEGLEELINKIKSI 361 T +EY H +S+ + +++LI+KIK++ Sbjct: 122 ---TLKDEYRVHELYKIGISEIVTVSASHDKHIDKLIHKIKTL 161 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI ++G N GKSS+ NAL ++ I+ ++PGTTRD + I DTAG+R+ Sbjct: 213 KIALIGRPNVGKSSIINALLNEERCIIDNVPGTTRDNIDILYSHNDRSYLFIDTAGLRKM 272 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E RT + AD+ LL+ Sbjct: 273 KSVKNSIEWISSSRTEKAIARADICLLV 300 >gi|307267081|ref|ZP_07548594.1| ribosome-associated GTPase EngA [Thermoanaerobacter wiegelii Rt8.B1] gi|306917912|gb|EFN48173.1| ribosome-associated GTPase EngA [Thermoanaerobacter wiegelii Rt8.B1] Length = 439 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI ++G N GKSSL N + ++ IV++IPGTTRD + +G + DTAGIR Sbjct: 178 KIAVIGKPNVGKSSLVNKILGEERVIVSNIPGTTRDAIDTPFSKDGKNYVLIDTAGIRRK 237 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 I +E+ + R +E +D+ LL+ Sbjct: 238 SRISESIERYSVLRALAAIERSDICLLM 265 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 51/182 (28%), Positives = 82/182 (45%), Gaps = 48/182 (26%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-----------------ID 261 G + I+G N GKS+LFN + K ++IV D PG TRD + +D Sbjct: 3 GAMVSIVGRPNVGKSTLFNKIMGKRISIVEDKPGVTRDRIYGNAEWLDKKFILVDTGGLD 62 Query: 262 LDLEGYL---VKISDTAGIRETDDIV----EKEGIKRTFLEVEN------ADLILLLKEI 308 + E L V++ A I +D I+ KEG+ E+ N ++IL+ ++ Sbjct: 63 PNAEDILFSKVRLQVEAAIDASDVILFLVDAKEGLMPEDEEIANILRRAKKEVILVCNKV 122 Query: 309 NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKK 368 +S KE+ P DF +G + + IS+ G G+ EL++++ KK Sbjct: 123 DSFKEMP-PTYYDFFSLGLGNPIP----------ISASNGLGIGELLDEV-------VKK 164 Query: 369 LP 370 LP Sbjct: 165 LP 166 >gi|317056789|ref|YP_004105256.1| ribosome-associated GTPase EngA [Ruminococcus albus 7] gi|315449058|gb|ADU22622.1| ribosome-associated GTPase EngA [Ruminococcus albus 7] Length = 443 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 36/89 (40%), Positives = 54/89 (60%), Gaps = 5/89 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRE 279 K+ ++G N GKSSL N + ++ IV+DI GTTRD D++ E G V I DTAGIR Sbjct: 179 KVAVIGKPNVGKSSLINRICGEERVIVSDIAGTTRDATDTDIENEFGKFVFI-DTAGIRR 237 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLL 305 + VEK + R ++ V+ AD+ +++ Sbjct: 238 KSKVLESVEKYSVLRAYMAVDRADVAVIV 266 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 55/90 (61%), Gaps = 1/90 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + ++G N GKS+LFN L + ++IV D PG TRD + + G + DT GI E+ Sbjct: 6 VAVVGRPNVGKSTLFNKLIGQRLSIVEDTPGVTRDRIYGKCEWLGREFMLVDTGGIEPES 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310 +DI+ + +++ L + +A++I+L+ +I S Sbjct: 66 NDIILSQMRRQSELAITSANVIILVTDIKS 95 >gi|292806620|gb|ADE42440.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLRAAQMSDLIL 90 >gi|253576396|ref|ZP_04853726.1| ribosome-associated GTPase EngA [Paenibacillus sp. oral taxon 786 str. D14] gi|251844289|gb|EES72307.1| ribosome-associated GTPase EngA [Paenibacillus sp. oral taxon 786 str. D14] Length = 442 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ ++G N GKSSL NA+ ++ IV+DI GTTRD + + +G + DTAG+R+ Sbjct: 180 RVALIGRPNVGKSSLVNAILGEERVIVSDIAGTTRDAIDTPFEKDGQRYVLIDTAGMRKR 239 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + EK + R +E AD++L+L Sbjct: 240 GKVYETTEKYSVMRAMKAIERADVVLVL 267 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 9/89 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN + +AIV D PG TRD + + G I DT GI E D Sbjct: 8 VAIVGRPNVGKSTIFNRIIGDRLAIVEDKPGITRDRIYGASEWNGKPFSIIDTGGI-ELD 66 Query: 282 DIVEKEGIKRTF-----LEVENADLILLL 305 D +E I ++ L +E AD+I+ + Sbjct: 67 D---EEPILKSIRMQAELAIEEADVIVFM 92 >gi|122700863|emb|CAL88020.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRDV + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDVNKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|332799113|ref|YP_004460612.1| GTP-binding protein engA [Tepidanaerobacter sp. Re1] gi|332696848|gb|AEE91305.1| GTP-binding protein engA [Tepidanaerobacter sp. Re1] Length = 439 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKSSL NA+ ++ IV+DIPGTTRD + ++ G + DTAG+R+ Sbjct: 177 KVAIIGKPNVGKSSLLNAILGEERVIVSDIPGTTRDAIDSYFEINGKKMLFIDTAGLRKK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 I VE R ++ AD++L++ Sbjct: 237 SRISEDVEYYSTVRALGAIDRADVVLMV 264 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 41/158 (25%), Positives = 78/158 (49%), Gaps = 24/158 (15%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + ++G N GKS+LFN + K ++IV D PG TRD + + + G + DT G+ + Sbjct: 5 VAVVGKPNVGKSTLFNRIIGKRISIVDDKPGVTRDRIYGEAEWNGKKFTMVDTGGVEPAS 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNID-----------FIFIGTKS 329 DI+ + ++ +E A+LIL + ++ K+ ++ P ++D + + K Sbjct: 65 KDIILSQMKRQADFAIETANLILFM--VDGKEGLT-PTDLDVAQILRRSGKPVLLVVNKV 121 Query: 330 DLYSTYTEEYDH---------LISSFTGEGLEELINKI 358 D Y+ +Y+ IS+ G + +L++KI Sbjct: 122 DNYTNTAYDYEFYKLGFGDPIFISAVHGLAVGDLLDKI 159 >gi|122702343|emb|CAL88362.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|292806684|gb|ADE42472.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 4/102 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI 320 ++ KE + +DLIL + K I S ++I + I Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREI 110 >gi|294155882|ref|YP_003560266.1| GTP-binding protein [Mycoplasma crocodyli MP145] gi|291600022|gb|ADE19518.1| GTP-binding protein [Mycoplasma crocodyli MP145] Length = 434 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 37/94 (39%), Positives = 54/94 (57%), Gaps = 3/94 (3%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 +K+ I+G NAGKSSL N LAK++ +IV++I GTTRD + + + G I DTAGI Sbjct: 171 FKLSIIGKPNAGKSSLLNNLAKENRSIVSEIAGTTRDSVKSTVQINGQKYNIIDTAGIMR 230 Query: 280 TDDIVEK---EGIKRTFLEVENADLILLLKEINS 310 +VE + R + ADL L++ + S Sbjct: 231 KSRLVESVDHYALMRAMNSLNEADLSLIIVDATS 264 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 51/85 (60%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI I+G N GKS+ FN L K ++IV D PG TRD L +++ G ++K+ DT GI Sbjct: 4 KIAIIGKPNVGKSTFFNRLIGKKISIVYDQPGVTRDRLYENIEWCGRVIKMIDTGGIEIE 63 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 + +++ + + ++ AD+I+ + Sbjct: 64 NKPFQEQIQIQAKIAIDEADVIIFI 88 >gi|269302630|gb|ACZ32730.1| putative GTP-binding protein Era [Chlamydophila pneumoniae LPCoLN] Length = 485 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 36/89 (40%), Positives = 51/89 (57%), Gaps = 1/89 (1%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RE 279 KI ILG N GKSSLFN L K+ +AIV GTTRD L +L G ++ DT G+ Sbjct: 3 KIAILGRPNVGKSSLFNRLCKRSLAIVNSQEGTTRDRLYGELHAFGVPAQVIDTGGVDHN 62 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEI 308 ++D +K + + AD++LL+ +I Sbjct: 63 SEDYFQKHIYNQALTGAKEADVLLLVIDI 91 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 3/94 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI ++G N GKSS+ N L ++ I+ + PGTTRD + I + DTAG+R+ Sbjct: 224 KIALIGRPNVGKSSIINGLLNEERCIIDNTPGTTRDNIDILYSHKDRQYLFIDTAGLRKM 283 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSK 311 + +E RT + AD+ LL+ + K Sbjct: 284 KSVKNSIEWISSSRTEKAISRADICLLVIDATQK 317 >gi|122702417|emb|CAL88399.1| GTPase [Helicobacter pylori] Length = 168 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 40/96 (41%), Positives = 56/96 (58%), Gaps = 4/96 (4%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LAK+ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 8 IAILGQPNVGKSSLFNCLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 66 Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEI 314 + KE + +DLIL + K I S ++I Sbjct: 67 AFLSKEIKAFNLKAAQMSDLILYVVDGKSIPSDEDI 102 >gi|317177334|dbj|BAJ55123.1| GTP-binding protein EngA [Helicobacter pylori F16] Length = 461 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 11 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 70 ALLSKEIKALNLKAAQMSDLIL 91 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 49/178 (27%), Positives = 87/178 (48%), Gaps = 25/178 (14%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSL NAL KK+ ++V+ + GTT D + + + + DTAGIR Sbjct: 201 QVGIIGRVNVGKSSLLNALTKKERSLVSSMAGTTIDPIDETILIGDQKICFVDTAGIRHR 260 Query: 281 DDI--VEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330 I +EK ++RT +E + + LL+ ++++ ++ ++ I I K D Sbjct: 261 GKILGIEKYALERTQKALEKSHIALLVLDVSAPFVELDEKISSLADKHSLGIILILNKWD 320 Query: 331 L-YSTYTE------------EYDHLI--SSFTGEGLEELINKIKSILSNKFKKLPFSI 373 + Y+ Y E EY +I S ++E+ +KI + K++P S+ Sbjct: 321 IRYAPYEEIMATLKRKFRFLEYAPVITTSCLKARHIDEIKHKIIEVYECFSKRIPTSL 378 >gi|317153825|ref|YP_004121873.1| ribosome-associated GTPase EngA [Desulfovibrio aespoeensis Aspo-2] gi|316944076|gb|ADU63127.1| ribosome-associated GTPase EngA [Desulfovibrio aespoeensis Aspo-2] Length = 497 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 65/125 (52%), Gaps = 11/125 (8%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 G ++ +LG NAGKSS+ N + D IV+D+ GTTRD + + + +G DTAG+ Sbjct: 184 RGLRLTMLGRPNAGKSSIINRIIGTDRLIVSDVAGTTRDSIDVTFERQGKRYTFVDTAGV 243 Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLLKEI------NSKKEISF--PKNIDFIFIG 326 R +I +EK + R + +D+ +L+ +I K+ I F + F+ + Sbjct: 244 RRRANIQEHLEKISVIRALKNSKRSDVTILVIDITLGVGRQDKRLIEFLAKEKTPFMVVC 303 Query: 327 TKSDL 331 K+DL Sbjct: 304 NKADL 308 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 32/56 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 + ++G N GKS+LFN L +K AI D+PG TRD + + + + DT G+ Sbjct: 5 VALVGRPNVGKSTLFNRLLRKSRAITHDLPGVTRDRIYGECQMGDVKFDLVDTGGM 60 >gi|78213545|ref|YP_382324.1| GTP-binding protein EngA [Synechococcus sp. CC9605] gi|123577697|sp|Q3AI13|DER_SYNSC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|78198004|gb|ABB35769.1| Small GTP-binding protein domain [Synechococcus sp. CC9605] Length = 455 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSL NA+ + AIV+ I GTTRD + + E ++ DTAGIR Sbjct: 179 QMAIIGRPNVGKSSLLNAICGEQRAIVSPIRGTTRDTIDTSIIRENRPWRLVDTAGIRRR 238 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + E GI R+F +E +D+ +L+ Sbjct: 239 RSVNYGPEFFGINRSFKAIERSDVCVLV 266 Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 31/61 (50%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+L N L + AIV D PG TRD D K+ DT G+ D Sbjct: 6 VAIIGRPNVGKSTLVNRLCRSREAIVHDQPGVTRDRTYQDGYWGDREFKVVDTGGLVFDD 65 Query: 282 D 282 D Sbjct: 66 D 66 >gi|326391582|ref|ZP_08213112.1| ribosome-associated GTPase EngA [Thermoanaerobacter ethanolicus JW 200] gi|325992364|gb|EGD50826.1| ribosome-associated GTPase EngA [Thermoanaerobacter ethanolicus JW 200] Length = 439 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI ++G N GKSSL N + ++ IV++IPGTTRD + +G + DTAGIR Sbjct: 178 KIAVIGKPNVGKSSLVNKILGEERVIVSNIPGTTRDAIDTPFSKDGKNYVLIDTAGIRRK 237 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 I +E+ + R +E +D+ LL+ Sbjct: 238 SRISESIERYSVLRALAAIERSDICLLM 265 Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust. Identities = 51/182 (28%), Positives = 82/182 (45%), Gaps = 48/182 (26%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-----------------ID 261 G + I+G N GKS+LFN + K ++IV D PG TRD + +D Sbjct: 3 GAIVSIVGRPNVGKSTLFNKIMGKRISIVEDKPGVTRDRIYGNAEWLDKKFILVDTGGLD 62 Query: 262 LDLEGYL---VKISDTAGIRETDDIV----EKEGIKRTFLEVEN------ADLILLLKEI 308 + E L V++ A I +D I+ KEG+ E+ N ++IL+ ++ Sbjct: 63 PNAEDILFSKVRLQVEAAIDASDVILFLVDAKEGLMPEDEEIANILRRAKKEVILVCNKV 122 Query: 309 NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKK 368 +S KE+ P DF +G + + IS+ G G+ EL++++ KK Sbjct: 123 DSFKEMP-PTYYDFFSLGLGNPIP----------ISASNGLGIGELLDEV-------VKK 164 Query: 369 LP 370 LP Sbjct: 165 LP 166 >gi|122701343|emb|CAL88061.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 39/83 (46%), Positives = 55/83 (66%), Gaps = 3/83 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEV-ENADLIL 303 ++ KE IK L+V + +DLIL Sbjct: 69 ALLSKE-IKALNLKVAQMSDLIL 90 >gi|289811789|ref|ZP_06542418.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 377 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 62/98 (63%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ + + DTAG+R+ Sbjct: 91 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRKR 150 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D VEK + +T +E+A+++LL+ I++++ IS Sbjct: 151 GKITDAVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 186 >gi|222110307|ref|YP_002552571.1| gtp-binding protein enga [Acidovorax ebreus TPSY] gi|254783151|sp|B9MFY0|DER_ACIET RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|221729751|gb|ACM32571.1| Miro domain protein [Acidovorax ebreus TPSY] Length = 447 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 29/92 (31%), Positives = 54/92 (58%), Gaps = 3/92 (3%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 +N ++ + G N GKS+L N ++ + D+PGTTRD +++ + G ++ DTAG Sbjct: 177 KNVIRLAVAGRPNVGKSTLINTWLGEERLVAFDMPGTTRDAISVPFERNGQKFELIDTAG 236 Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLL 305 +R + +EK + +T +E+A+++LLL Sbjct: 237 LRRKGKVFEAIEKFSVVKTLQAIESANVVLLL 268 Score = 40.0 bits (92), Expect = 0.74, Method: Compositional matrix adjust. Identities = 19/35 (54%), Positives = 22/35 (62%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 I ++G N GKS+LFN L K AIV D G TRD Sbjct: 5 IALVGRPNVGKSTLFNRLTKSRDAIVADFAGLTRD 39 >gi|163842662|ref|YP_001627066.1| GTP-binding protein EngA [Brucella suis ATCC 23445] gi|189037139|sp|B0CK66|DER_BRUSI RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|163673385|gb|ABY37496.1| small GTP-binding protein domain [Brucella suis ATCC 23445] Length = 483 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 79/165 (47%), Gaps = 24/165 (14%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G+ + I+G N GKS+LFN L + +A+V D+PG TRD D L ++ DTAG+ Sbjct: 2 GFTLAIVGRPNVGKSTLFNRLVGRKLALVDDLPGVTRDRRIHDAKLYDLKFQLIDTAGLE 61 Query: 279 E-TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF-----------IFIG 326 E +D +E +T + AD +L + I++K I+ P + F + + Sbjct: 62 EAANDSLEARMRAQTEAAISEADAVLFV--IDAKAGIT-PADSTFAEAVRRSGKPVVLVA 118 Query: 327 TKSDLYSTYTEEYDHL---------ISSFTGEGLEELINKIKSIL 362 K++ + YD IS+ G+G+ +L + I +L Sbjct: 119 NKAEARGSEAGMYDAFQLGLGEPCPISAEHGQGMPDLRDAIVELL 163 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 38/66 (57%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I I+G NAGKS+L N + +D + G TRD ++ D + G +K+ DTAG+R Sbjct: 213 RIAIVGRPNAGKSTLINTMLGEDRLLTGPEAGITRDSISADWEWHGRKIKLFDTAGMRRK 272 Query: 281 DDIVEK 286 + EK Sbjct: 273 ARVQEK 278 >gi|122702541|emb|CAL88460.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 52/159 (32%), Positives = 78/159 (49%), Gaps = 18/159 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEIS-----FPKNIDFIFIGTKSD--- 330 ++ KE + +DLIL + K I S ++I F N + + K D Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKTNPNCFLVINKIDNDK 128 Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363 +S++ IS G+ LI+ I S L+ Sbjct: 129 EKERAYAFSSFGTPKSFNISVSHNRGISALIDAILSALN 167 >gi|15618753|ref|NP_225039.1| GTP-binding protein EngA [Chlamydophila pneumoniae CWL029] gi|15836377|ref|NP_300901.1| GTP-binding protein EngA [Chlamydophila pneumoniae J138] gi|16752195|ref|NP_445562.1| GTP-binding protein EngA [Chlamydophila pneumoniae AR39] gi|33242204|ref|NP_877145.1| GTP-binding protein EngA [Chlamydophila pneumoniae TW-183] gi|8134434|sp|Q9Z762|DER_CHLPN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|4377159|gb|AAD18982.1| GTPase/GTP-binding protein [Chlamydophila pneumoniae CWL029] gi|7189939|gb|AAF38801.1| GTP-binding protein [Chlamydophila pneumoniae AR39] gi|8979218|dbj|BAA99052.1| GTPase/GTP-binding protein [Chlamydophila pneumoniae J138] gi|33236715|gb|AAP98802.1| GTPase/GTP-binding protein [Chlamydophila pneumoniae TW-183] Length = 487 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 36/89 (40%), Positives = 51/89 (57%), Gaps = 1/89 (1%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RE 279 KI ILG N GKSSLFN L K+ +AIV GTTRD L +L G ++ DT G+ Sbjct: 3 KIAILGRPNVGKSSLFNRLCKRSLAIVNSQEGTTRDRLYGELHAFGVPAQVIDTGGVDHN 62 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEI 308 ++D +K + + AD++LL+ +I Sbjct: 63 SEDYFQKHIYNQALTGAKEADVLLLVIDI 91 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 3/94 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI ++G N GKSS+ N L ++ I+ + PGTTRD + I + DTAG+R+ Sbjct: 226 KIALIGRPNVGKSSIINGLLNEERCIIDNTPGTTRDNIDILYSHKDRQYLFIDTAGLRKM 285 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSK 311 + +E RT + AD+ LL+ + K Sbjct: 286 KSVKNSIEWISSSRTEKAISRADICLLVIDATQK 319 >gi|122701695|emb|CAL88237.1| GTPase [Helicobacter pylori] gi|122701699|emb|CAL88239.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 4/102 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI 320 ++ KE + +DLIL + K I S ++I + I Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYIVDGKSIPSDEDIKLFREI 110 >gi|167037254|ref|YP_001664832.1| GTP-binding protein EngA [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256752010|ref|ZP_05492879.1| small GTP-binding protein [Thermoanaerobacter ethanolicus CCSD1] gi|320115673|ref|YP_004185832.1| ribosome-associated GTPase EngA [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|238687651|sp|B0K8N3|DER_THEP3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|166856088|gb|ABY94496.1| small GTP-binding protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256749120|gb|EEU62155.1| small GTP-binding protein [Thermoanaerobacter ethanolicus CCSD1] gi|319928764|gb|ADV79449.1| ribosome-associated GTPase EngA [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 439 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI ++G N GKSSL N + ++ IV++IPGTTRD + +G + DTAGIR Sbjct: 178 KIAVIGKPNVGKSSLVNKILGEERVIVSNIPGTTRDAIDTPFSKDGKNYVLIDTAGIRRK 237 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 I +E+ + R +E +D+ LL+ Sbjct: 238 SRISESIERYSVLRALAAIERSDICLLM 265 Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust. Identities = 51/182 (28%), Positives = 82/182 (45%), Gaps = 48/182 (26%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-----------------ID 261 G + I+G N GKS+LFN + K ++IV D PG TRD + +D Sbjct: 3 GAMVSIVGRPNVGKSTLFNKIMGKRISIVEDKPGVTRDRIYGNVEWLDKKFILVDTGGLD 62 Query: 262 LDLEGYL---VKISDTAGIRETDDIV----EKEGIKRTFLEVEN------ADLILLLKEI 308 + E L V++ A I +D I+ KEG+ E+ N ++IL+ ++ Sbjct: 63 PNAEDILFSKVRLQVEAAIDASDVILFLVDAKEGLMPEDEEIANILRRAKKEVILVCNKV 122 Query: 309 NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKK 368 +S KE+ P DF +G + + IS+ G G+ EL++++ KK Sbjct: 123 DSFKEMP-PTYYDFFSLGLGNPIP----------ISASNGLGIGELLDEV-------VKK 164 Query: 369 LP 370 LP Sbjct: 165 LP 166 >gi|47094517|ref|ZP_00232186.1| GTPase family protein [Listeria monocytogenes str. 4b H7858] gi|47017110|gb|EAL07974.1| GTPase family protein [Listeria monocytogenes str. 4b H7858] Length = 311 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 68/125 (54%), Gaps = 8/125 (6%) Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252 L D+L + + +H + + E + K ++G N GKSS+ NAL +D IV+DI G Sbjct: 27 LGDML---DAVRAHFPKEEEEEYPDDTVKFSLIGRPNVGKSSILNALLGEDRVIVSDIAG 83 Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEIN 309 TTRD + +G + DTAG+R+ + EK + R +E +D++L++ IN Sbjct: 84 TTRDAIDTTYTFDGQDYVMIDTAGMRKRGKVYESTEKYSVLRAMRAIERSDVVLVV--IN 141 Query: 310 SKKEI 314 +++ I Sbjct: 142 AEEGI 146 >gi|317131054|ref|YP_004090368.1| small GTP-binding protein [Ethanoligenens harbinense YUAN-3] gi|315469033|gb|ADU25637.1| small GTP-binding protein [Ethanoligenens harbinense YUAN-3] Length = 414 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 44/136 (32%), Positives = 71/136 (52%), Gaps = 14/136 (10%) Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDT 274 I N I G NAGKSSL NA+A + VA+ +D+PGTT D + ++ L V ++DT Sbjct: 6 IANRTHIAFFGRRNAGKSSLLNAIAGQPVAVTSDVPGTTTDPVHKTMEILPLGPVLLTDT 65 Query: 275 AGIRETDDIVEKEGIK--RTFLEVENADLILLLKEINSKK---EISF-----PKNIDFIF 324 AG+ DD E G++ + + E+ DL +L+ + E +F + + F+ Sbjct: 66 AGL---DDTGELGGLRVEKAYEELRRTDLAVLVADAADGVGNFETAFIGELRKRRVPFVV 122 Query: 325 IGTKSDLYSTYTEEYD 340 + K D ++ T+E D Sbjct: 123 VLNKCDTHAVSTDELD 138 >gi|296122493|ref|YP_003630271.1| small GTP-binding protein [Planctomyces limnophilus DSM 3776] gi|296014833|gb|ADG68072.1| small GTP-binding protein [Planctomyces limnophilus DSM 3776] Length = 496 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 47/178 (26%), Positives = 86/178 (48%), Gaps = 31/178 (17%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+ N+LA+ + IV++IPGTTRD + + +L+G DT G+R+ Sbjct: 185 KLAIVGRRNVGKSTFVNSLAETERMIVSEIPGTTRDSVDVRFELDGKSFVAIDTPGVRKR 244 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS----------FPKNIDFIFIGT 327 + +E G+ R + A+++L+ + + IS + + IF+ Sbjct: 245 KSLANDIEWYGLARAKRSIRRANVVLMF--FDCTQPISRVDKQLVHEIYEYHKPCIFVVN 302 Query: 328 KSDLYSTYTEEY--DHLISSF--------------TGEGLEELINKIKSILSNKFKKL 369 K DL+ E ++L+ +F TG+ +++LIN +SI ++ Sbjct: 303 KWDLHGDQEMEAWNEYLLQNFASMRHVPLAFITGMTGKNVKKLINLAQSIFKQALMRI 360 Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 1/86 (1%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKSS+ N LA+K +++V G TRD + + ++ DT GI Sbjct: 5 KVAIVGRPNVGKSSILNWLAQKRISVVDPTAGVTRDRVMYLMHEGDRYFELVDTGGIGIV 64 Query: 281 D-DIVEKEGIKRTFLEVENADLILLL 305 D D + E + + ++ ADLIL + Sbjct: 65 DVDDLSNEIDYQINVGIQEADLILFV 90 >gi|122700927|emb|CAL88051.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 TLLSKEIKALNLKAAQMSDLIL 90 >gi|114328959|ref|YP_746116.1| GTP-binding protein EngA [Granulibacter bethesdensis CGDNIH1] gi|114317133|gb|ABI63193.1| GTP-binding protein [Granulibacter bethesdensis CGDNIH1] Length = 483 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 52/176 (29%), Positives = 81/176 (46%), Gaps = 19/176 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET- 280 + I G N GKS+LFN L + +A+V D PG TRD + L G LVK+ DTAG+ E Sbjct: 22 VAIAGRPNVGKSTLFNRLVGRRMALVADTPGVTRDRKEAEAMLRGRLVKLIDTAGLEEAP 81 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFP-----KNIDFIFIGTKSDLY 332 D + + + V ADL++ + + S + F +N + + K++ Sbjct: 82 QDTIAGRMRQSSETAVSQADLVVFVVDARSGITPADTHFASWLRRQNRPVLLVTNKAEAR 141 Query: 333 STYT---EEY-----DHL-ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379 E Y D L +S+ G G+ +L+ +I LS + P +P KR Sbjct: 142 GAGAEALEAYRLGLGDPLAVSAEHGLGIADLMREIADRLSTDADR-PSDMPKRKRR 196 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 51/87 (58%), Gaps = 3/87 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G NAGKS+L N L +D I PG TRD +++ L + +++ DTAG+R Sbjct: 218 KLAIVGRPNAGKSTLLNRLLGEDRVITGPEPGLTRDSISVTLSDDIGEIELVDTAGLRRR 277 Query: 281 ---DDIVEKEGIKRTFLEVENADLILL 304 D+ +EK + + ++ A++++L Sbjct: 278 ARIDESLEKMSVSASIEALKMAEIVVL 304 >gi|86158079|ref|YP_464864.1| GTP-binding protein EngA [Anaeromyxobacter dehalogenans 2CP-C] gi|85774590|gb|ABC81427.1| small GTP-binding protein [Anaeromyxobacter dehalogenans 2CP-C] Length = 465 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 33/85 (38%), Positives = 51/85 (60%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + ++G N GKS+LFN LA + VAIV D+PG TRD D+ EG V + DT G E+ Sbjct: 8 VALVGRPNVGKSTLFNRLAGRRVAIVEDVPGVTRDRNYADVIWEGRAVSVVDTGGFEPES 67 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 D + + ++ L V+ A +++L+ Sbjct: 68 RDRLMSQVREQAQLAVDEASVVVLV 92 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 41/66 (62%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKS+ NAL ++ +V+D+PGTTRD + + +G ++DTAGIR Sbjct: 197 RLAIVGRPNVGKSTFVNALLGEERFVVSDVPGTTRDAIDSLVAHKGRRFVVTDTAGIRRK 256 Query: 281 DDIVEK 286 I +K Sbjct: 257 RSIAQK 262 >gi|242255856|gb|ACS88912.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 51/158 (32%), Positives = 78/158 (49%), Gaps = 18/158 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEIS-----FPKNIDFIFIGTKSD--- 330 ++ KE + +DLIL + K I S +++ F N + + K D Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128 Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362 +S++ IS G+ LI+ I S+L Sbjct: 129 EKERSYAFSSFGMPKSFNISVSHNRGISALIDAILSVL 166 >gi|15894988|ref|NP_348337.1| GTP-binding protein EngA [Clostridium acetobutylicum ATCC 824] gi|26006729|sp|Q97ID7|DER_CLOAB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|15024676|gb|AAK79677.1|AE007680_10 Predicted GTPase [Clostridium acetobutylicum ATCC 824] gi|325509125|gb|ADZ20761.1| GTP-binding protein EngA [Clostridium acetobutylicum EA 2018] Length = 438 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 33/85 (38%), Positives = 51/85 (60%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFN LA K V+IV D PG TRD + + + G I DT GI E Sbjct: 6 VTIVGRPNVGKSTLFNKLAGKRVSIVEDTPGVTRDRIYAESEWVGKKFTIIDTGGIEPEN 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 +DI+ + ++ + +E +D+I+ + Sbjct: 66 NDIILTQMRRQAQIAIEMSDVIIFM 90 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/89 (41%), Positives = 51/89 (57%), Gaps = 5/89 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRE 279 KI +G N GKSSL N + ++ IV+DIPGTTRD + L+ + G LV I DTAG+R Sbjct: 178 KIAFVGKPNVGKSSLTNRILGEERVIVSDIPGTTRDAIDSFLETDFGKLVLI-DTAGLRR 236 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLL 305 I +E+ RT +E D+ L+ Sbjct: 237 KSRIKEEIERYSAVRTMAAIERCDVCTLI 265 >gi|284050435|ref|ZP_06380645.1| GTP-binding protein EngA [Arthrospira platensis str. Paraca] gi|291569696|dbj|BAI91968.1| GTP-binding protein [Arthrospira platensis NIES-39] Length = 453 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSL N ++ AIV+ I GTTRD + ++ G ++ DTAGIR Sbjct: 178 RVAIVGRPNVGKSSLLNTFLGQERAIVSPISGTTRDAIDTIVEHNGNTYRLVDTAGIRRK 237 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + E GI R F + AD++L + Sbjct: 238 KHVEYGAEFFGINRAFKAIRRADVVLFV 265 Score = 39.7 bits (91), Expect = 0.99, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 30/61 (49%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+L N L + AIV D PG TRD + + DT G+ D Sbjct: 6 VAIIGRPNVGKSTLVNRLTQTQDAIVHDQPGMTRDRTYRSAYWQDREFIVVDTGGLVFDD 65 Query: 282 D 282 D Sbjct: 66 D 66 >gi|122702619|emb|CAL88499.1| GTPase [Helicobacter pylori] gi|122702667|emb|CAL88523.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 51/158 (32%), Positives = 78/158 (49%), Gaps = 18/158 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEIS-----FPKNIDFIFIGTKSD--- 330 ++ KE + +DLIL + K I S +++ F N + + K D Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128 Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362 +S++ IS G+ LI+ I S+L Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSVL 166 >gi|167040606|ref|YP_001663591.1| GTP-binding protein EngA [Thermoanaerobacter sp. X514] gi|300914647|ref|ZP_07131963.1| ribosome-associated GTPase EngA [Thermoanaerobacter sp. X561] gi|307724119|ref|YP_003903870.1| ribosome-associated GTPase EngA [Thermoanaerobacter sp. X513] gi|238687595|sp|B0K3E4|DER_THEPX RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|166854846|gb|ABY93255.1| small GTP-binding protein [Thermoanaerobacter sp. X514] gi|300889582|gb|EFK84728.1| ribosome-associated GTPase EngA [Thermoanaerobacter sp. X561] gi|307581180|gb|ADN54579.1| ribosome-associated GTPase EngA [Thermoanaerobacter sp. X513] Length = 439 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI ++G N GKSSL N + ++ IV++IPGTTRD + +G + DTAGIR Sbjct: 178 KIAVIGKPNVGKSSLVNKILGEERVIVSNIPGTTRDAIDTPFSKDGKNYVLIDTAGIRRK 237 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 I +E+ + R +E +D+ LL+ Sbjct: 238 SRISESIERYSVLRALAAIERSDICLLM 265 Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust. Identities = 50/182 (27%), Positives = 82/182 (45%), Gaps = 48/182 (26%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-----------------ID 261 G + I+G N GKS+LFN + K ++IV D PG TRD + +D Sbjct: 3 GAMVSIVGRPNVGKSTLFNKIMGKRISIVEDKPGVTRDRIYGNAEWLDKKFILVDTGGLD 62 Query: 262 LDLEGYL---VKISDTAGIRETDDIV----EKEGIKRTFLEVEN------ADLILLLKEI 308 + E L V++ A I +D I+ KEG+ E+ N ++IL+ ++ Sbjct: 63 PNAEDILFSKVRLQVEAAIDTSDVILFLVDAKEGLMPEDEEIANILRRAKKEVILVCNKV 122 Query: 309 NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKK 368 +S KE+ P DF +G + + IS+ G G+ EL++++ K+ Sbjct: 123 DSFKEMP-PTYYDFFSLGLGNPIP----------ISASNGLGIGELLDEV-------VKR 164 Query: 369 LP 370 LP Sbjct: 165 LP 166 >gi|326336190|ref|ZP_08202362.1| ribosome-associated GTPase EngA [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691699|gb|EGD33666.1| ribosome-associated GTPase EngA [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 434 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G NAGKSS NAL ++ IVTDI GTTRD + + G+ + DTAGIR Sbjct: 176 RFAVVGRPNAGKSSFINALIGEERYIVTDIAGTTRDAIDTRYNRFGFEFNLVDTAGIRRK 235 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E + R+ +E++D+ LLL Sbjct: 236 AKVKEDLEFYSVMRSVRAIEHSDVCLLL 263 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/90 (37%), Positives = 48/90 (53%), Gaps = 1/90 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 + I+G N GKS+ FN L ++ AIV I G TRD D G + DT G + Sbjct: 5 VAIVGRPNVGKSTFFNRLVQRREAIVDSISGVTRDRHYGKTDWNGRDFSVIDTGGYVAGG 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310 DD+ +KE K+ L +E AD I+ L ++ S Sbjct: 65 DDVFQKEIDKQVNLAIEEADAIIFLTDVES 94 >gi|260434834|ref|ZP_05788804.1| ribosome-associated GTPase EngA [Synechococcus sp. WH 8109] gi|260412708|gb|EEX06004.1| ribosome-associated GTPase EngA [Synechococcus sp. WH 8109] Length = 455 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSL NA+ + AIV+ I GTTRD + + E ++ DTAGIR Sbjct: 179 QMAIIGRPNVGKSSLLNAICGEQRAIVSPIRGTTRDTIDTSIIRENRPWRLVDTAGIRRR 238 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + E GI R+F +E +D+ +L+ Sbjct: 239 RSVNYGPEFFGINRSFKAIERSDVCVLV 266 Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 31/61 (50%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+L N L + AIV D PG TRD D K+ DT G+ D Sbjct: 6 VAIIGRPNVGKSTLVNRLCRSREAIVHDQPGVTRDRTYQDGYWGDREFKVVDTGGLVFDD 65 Query: 282 D 282 D Sbjct: 66 D 66 >gi|122702657|emb|CAL88518.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 52/159 (32%), Positives = 79/159 (49%), Gaps = 18/159 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEIS-----FPKNIDFIFIGTKSD--- 330 ++ KE + +DLIL + K I S ++I F N + + K D Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREIFKINPNCFLVINKIDNDK 128 Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363 +S++ IS G+ LI+ I S+L+ Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISTLIDAILSVLN 167 >gi|122701635|emb|CAL88207.1| GTPase [Helicobacter pylori] gi|122701665|emb|CAL88222.1| GTPase [Helicobacter pylori] gi|122701667|emb|CAL88223.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKITLNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122700903|emb|CAL88040.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|329943260|ref|ZP_08292034.1| small GTP-binding domain protein [Chlamydophila psittaci Cal10] gi|332287839|ref|YP_004422740.1| ribosome-associated GTPase [Chlamydophila psittaci 6BC] gi|313848411|emb|CBY17415.1| putative GTP-binding protein [Chlamydophila psittaci RD1] gi|325506575|gb|ADZ18213.1| ribosome-associated GTPase [Chlamydophila psittaci 6BC] gi|328814807|gb|EGF84797.1| small GTP-binding domain protein [Chlamydophila psittaci Cal10] gi|328915100|gb|AEB55933.1| GTP-binding protein engA [Chlamydophila psittaci 6BC] Length = 474 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/89 (39%), Positives = 54/89 (60%), Gaps = 1/89 (1%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RE 279 +I ILG N GKSSLFN + K+ +AIV GTTRD L ++ G V++ DT G+ ++ Sbjct: 3 RIAILGRPNVGKSSLFNRMCKRSLAIVNSQEGTTRDRLYGEIRGWGIPVQVIDTGGVDKD 62 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEI 308 ++D +K K+ AD++LL+ +I Sbjct: 63 SEDHFQKHIYKQALAGANEADILLLVIDI 91 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI ++G N GKSS+ NAL ++ I+ +IPGTTRD + I DTAG+R+ Sbjct: 213 KIALIGRPNVGKSSIINALLNEERCIIDNIPGTTRDNIDILYSYNDRSYLFIDTAGLRKM 272 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E RT + AD+ LL+ Sbjct: 273 KSVKNSIEWISSSRTEKAIARADICLLV 300 >gi|254701190|ref|ZP_05163018.1| GTP-binding protein EngA [Brucella suis bv. 5 str. 513] gi|261751727|ref|ZP_05995436.1| GTP-binding protein engA [Brucella suis bv. 5 str. 513] gi|261741480|gb|EEY29406.1| GTP-binding protein engA [Brucella suis bv. 5 str. 513] Length = 483 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 78/165 (47%), Gaps = 24/165 (14%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G+ + I+G N GKS+LFN L + +A+V D+PG TRD D L ++ DTAG+ Sbjct: 2 GFTLAIVGRPNVGKSTLFNRLVGRKLALVDDLPGVTRDRRIHDAKLYDLKFQVIDTAGLE 61 Query: 279 E-TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF-----------IFIG 326 E +D +E +T + AD +L + I++K I+ P + F + + Sbjct: 62 EAANDSLEARMRAQTEAAISEADAVLFV--IDAKAGIT-PADSTFAEAVRRSGKPVVLVA 118 Query: 327 TKSDLYSTYTEEYDHL---------ISSFTGEGLEELINKIKSIL 362 K++ + YD IS+ G+G+ +L + I L Sbjct: 119 NKAEARGSEAGMYDAFQLGLGEPCPISAEHGQGMPDLRDAIVEFL 163 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 38/66 (57%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I I+G NAGKS+L N + +D + G TRD ++ D + G +K+ DTAG+R Sbjct: 213 RIAIVGRPNAGKSTLINTMLGEDRLLTGPEAGITRDSISADWEWHGRKIKLFDTAGMRRK 272 Query: 281 DDIVEK 286 + EK Sbjct: 273 ARVQEK 278 >gi|160946385|ref|ZP_02093594.1| hypothetical protein PEPMIC_00345 [Parvimonas micra ATCC 33270] gi|158447501|gb|EDP24496.1| hypothetical protein PEPMIC_00345 [Parvimonas micra ATCC 33270] Length = 441 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 54/88 (61%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI ++G N GKSSL N + ++ IV+DI GTTRD + ++++G +DTAG+R Sbjct: 178 KIALIGKPNVGKSSLMNRILGEERMIVSDIAGTTRDSIDSRVEIDGKTYIFTDTAGLRRK 237 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 +I +E+ + RT VE +D+ +LL Sbjct: 238 RNITENLERYSVVRTLNAVERSDIAILL 265 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 82/164 (50%), Gaps = 19/164 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + ++G N GKS+LFN L K +AI D PG TRD L D + + + DT G+ + Sbjct: 6 VCVVGRPNVGKSTLFNKLINKRIAITEDTPGVTRDRLYQDAEWQNKHFILCDTGGLEPNS 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE-----INSKKEIS---FPKNIDFIFIGTKSDLY 332 DDI+ ++ + + +ENAD+IL + + ++ +EIS + K D + Sbjct: 66 DDIILQKIKAQADVAMENADVILFVVDGKSGLMDEDREISNYLRRTKKPVVLAVNKVDTH 125 Query: 333 STYTEEYD---------HLISSFTGEGLEELINK-IKSILSNKF 366 E Y+ ++IS+ G GL +L+++ IK NK+ Sbjct: 126 KMPAEVYEFYELGFENLNIISATQGFGLGDLLDEIIKEFPENKY 169 >gi|122702649|emb|CAL88514.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 51/159 (32%), Positives = 79/159 (49%), Gaps = 18/159 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEIS-----FPKNIDFIFIGTKSD--- 330 ++ KE + +DLIL + K I S +++ F N + + K D Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128 Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363 +S++ IS G+ LI+ I S+L+ Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISTLIDAILSVLN 167 >gi|122701453|emb|CAL88116.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ KE + +DLIL + Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYI 92 >gi|122702237|emb|CAL88309.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|325289812|ref|YP_004265993.1| GTP-binding protein engA [Syntrophobotulus glycolicus DSM 8271] gi|324965213|gb|ADY55992.1| GTP-binding protein engA [Syntrophobotulus glycolicus DSM 8271] Length = 443 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI ++G N GKSSL N + ++ IV+DI GTTRD + E + DTAGIR Sbjct: 180 KIAVIGRPNVGKSSLVNKMVGEERVIVSDIAGTTRDAIDTPFRFEDRDYVLIDTAGIRRR 239 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 I E + R+F ++ AD++L++ Sbjct: 240 KKIAELTENYSVIRSFRAIDRADVVLMM 267 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 2/86 (2%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN + + +AIV + PG TRD L + + DT GI D Sbjct: 6 VAIVGRPNVGKSTLFNRVVGRMIAIVENTPGVTRDRLYFEAQWLNRNFTLIDTGGIEFKD 65 Query: 282 DIVEKEGIKRTFLE--VENADLILLL 305 + + E VE AD+++ + Sbjct: 66 QSTPLSSLMKQQAEIAVEEADVVVFV 91 >gi|317452835|emb|CBL87853.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 4/102 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI 320 ++ KE + +DLIL + K I S ++I + I Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREI 110 >gi|260591202|ref|ZP_05856660.1| ribosome-associated GTPase EngA [Prevotella veroralis F0319] gi|260537067|gb|EEX19684.1| ribosome-associated GTPase EngA [Prevotella veroralis F0319] Length = 437 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G NAGKSS+ NA +D IVT+I GTTRD + G+ + DTAGIR Sbjct: 177 RFAVVGRPNAGKSSIINAFIGEDRNIVTEIAGTTRDSIYTRYTKFGFDFYLVDTAGIRRK 236 Query: 281 DDIVEK---EGIKRTFLEVENADLILLL 305 + + E + R+ +ENAD+ +L+ Sbjct: 237 NKVTEDLEFYSVMRSIRSIENADVCILM 264 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/85 (38%), Positives = 46/85 (54%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 + I+G N GKS+LFN L + AIV+D GTTRD G + DT G + ++ Sbjct: 5 VAIVGRPNVGKSTLFNRLTQTRHAIVSDTAGTTRDRQYGKCQWNGREFSVVDTGGWVVKS 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 DD+ E K+ + E ADL+L L Sbjct: 65 DDVFEDAIRKQVLVATEEADLVLFL 89 >gi|122701599|emb|CAL88189.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ KE + +DLIL + Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYI 92 >gi|122700777|emb|CAL87977.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 51/82 (62%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI++D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAIISDFAGTTRDINKRKIVLNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|284116005|ref|ZP_06386701.1| GTP-binding protein engA [Candidatus Poribacteria sp. WGA-A3] gi|283829542|gb|EFC33894.1| GTP-binding protein engA [Candidatus Poribacteria sp. WGA-A3] Length = 435 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 53/88 (60%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ ++G N GKS+L N + ++ A+V+D+PGTTRD + L+ EG ++DTAG+R Sbjct: 176 RVAMVGRPNVGKSTLVNTILGEERAVVSDVPGTTRDPIDTHLEREGRTFLLTDTAGLRRR 235 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E + RT + +D+ +LL Sbjct: 236 GRVEPGIEGYSVARTMRALGRSDIGVLL 263 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 2/65 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI--RE 279 + ++G N GKS+LFN + AIV D PG TRD + + +G ++ DT G+ Sbjct: 4 VAVIGRPNVGKSTLFNRILGTRNAIVDDRPGVTRDRIYAECTYQGRRFQVVDTGGLDPTS 63 Query: 280 TDDIV 284 TDD++ Sbjct: 64 TDDML 68 >gi|149926362|ref|ZP_01914623.1| GTP-binding protein EngA [Limnobacter sp. MED105] gi|149824725|gb|EDM83939.1| GTP-binding protein EngA [Limnobacter sp. MED105] Length = 441 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 60/98 (61%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I G N GKS++ N L ++ I D+PGTTRD + ID + + DTAG+R+ Sbjct: 177 KVAIAGRPNVGKSTMVNTLLGEERVIAFDLPGTTRDSIYIDFERNDKPYTLIDTAGLRKR 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + VEK + +T +E+A++++L+ ++++++IS Sbjct: 237 GKVFESVEKFSVIKTLQAIEDANVVILM--LDAQQDIS 272 Score = 40.0 bits (92), Expect = 0.83, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 5/87 (5%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD--VLTIDLDLEGYLVKISDTAGIRE 279 I ++G N GKS+LFN L + A+V + PG TRD + YLV DT G+ Sbjct: 5 IALVGRPNVGKSTLFNRLTRTRDALVANQPGLTRDRHYGVGRIGPREYLV--VDTGGLEP 62 Query: 280 -TDDIVEKEGIKRTFLEVENADLILLL 305 D + E K++ + +DL+L L Sbjct: 63 VAKDGIYAEMAKQSRQAIVESDLVLFL 89 >gi|122702189|emb|CAL88285.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 39/83 (46%), Positives = 55/83 (66%), Gaps = 3/83 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEV-ENADLIL 303 ++ KE IK L+V + +DLIL Sbjct: 69 ALLSKE-IKALNLKVAQMSDLIL 90 >gi|122700895|emb|CAL88036.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ KE + +DLIL + Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYI 92 >gi|22298421|ref|NP_681668.1| GTP-binding protein EngA [Thermosynechococcus elongatus BP-1] gi|34222551|sp|Q8DKI1|DER_THEEB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|22294600|dbj|BAC08430.1| GTP-binding protein [Thermosynechococcus elongatus BP-1] Length = 449 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 37/100 (37%), Positives = 54/100 (54%), Gaps = 7/100 (7%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I G N GKSSL NAL D AIV+ I GTTRD + ++ G + DTAGIR+ Sbjct: 178 QVAIAGRPNVGKSSLLNALIGSDRAIVSPISGTTRDAIDTVIEHGGTQYRFIDTAGIRKR 237 Query: 281 DDIV---EKEGIKRTFLEVENADLILL----LKEINSKKE 313 + E + R F + +D++LL L+EI + + Sbjct: 238 THVAYGPEMFSVHRAFKAIHRSDVVLLVLDALEEITEQDQ 277 Score = 37.7 bits (86), Expect = 3.8, Method: Compositional matrix adjust. Identities = 17/35 (48%), Positives = 22/35 (62%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 + ++G N GKS+ N LA + AIV D PG TRD Sbjct: 6 VAVVGRPNVGKSTFVNRLAGERDAIVHDEPGVTRD 40 >gi|292806602|gb|ADE42431.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 4/102 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI 320 ++ KE + +DLIL + K I S ++I + I Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREI 110 >gi|301632619|ref|XP_002945379.1| PREDICTED: hypothetical protein LOC100487340 [Xenopus (Silurana) tropicalis] Length = 937 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 53/88 (60%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ + G N GKS+L N ++ + D+PGTTRD +++ + +G ++ DTAG+R Sbjct: 190 KLAVAGRPNVGKSTLINTWLGEERLVAFDLPGTTRDAISVPFERQGQKFELIDTAGLRRK 249 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +EK + +T +E+A+++LLL Sbjct: 250 GRVFEAIEKFSVVKTLQAIESANVVLLL 277 Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust. Identities = 37/107 (34%), Positives = 54/107 (50%), Gaps = 8/107 (7%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDTAG- 276 + I ++G++NAGKS+LFNAL K A D T D T L L+ G V +SDT G Sbjct: 747 FNISLVGYTNAGKSTLFNALVKAR-AYAADQLFATLDTTTRQLYLQDAGRSVSLSDTVGF 805 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI 323 IR+ + + + T E +ADL+L + FP+ I + Sbjct: 806 IRDLPHGL-VDAFQATLQEAVDADLLL---HVVDAANPHFPEQIQQV 848 Score = 40.0 bits (92), Expect = 0.84, Method: Compositional matrix adjust. Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 3/95 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 I ++G N GKS+LFN L + AIV D G TRD + + + DT G + Sbjct: 12 IALVGRPNVGKSTLFNRLTRSRDAIVADFAGLTRDRHYGNGRQGKHAYIVIDTGGFEPDA 71 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + +E K+T V +D++L + ++++ +S Sbjct: 72 SSGIFREMAKQTRQAVAESDVVLFV--VDARAGVS 104 >gi|217034119|ref|ZP_03439539.1| hypothetical protein HP9810_868g12 [Helicobacter pylori 98-10] gi|216943403|gb|EEC22859.1| hypothetical protein HP9810_868g12 [Helicobacter pylori 98-10] Length = 461 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 11 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 70 ALLSKEIKALNLKAAQMSDLIL 91 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 56/92 (60%), Gaps = 2/92 (2%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSL NAL KK+ ++V+ + GTT D + + + + DTAGIR Sbjct: 201 QVGIIGRVNVGKSSLLNALTKKERSLVSSMAGTTIDPIDETILIGDQKICFVDTAGIRHR 260 Query: 281 DDI--VEKEGIKRTFLEVENADLILLLKEINS 310 I +EK ++RT +E + ++LL+ ++++ Sbjct: 261 GKILGIEKYALERTQKALEKSHIVLLVLDVSA 292 >gi|122702519|emb|CAL88449.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ KE + +DLIL + Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYI 92 >gi|99905853|gb|ABF68621.1| YphC [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 39/83 (46%), Positives = 55/83 (66%), Gaps = 3/83 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEV-ENADLIL 303 ++ KE IK L+V + +DLIL Sbjct: 69 ALLSKE-IKALNLKVAQMSDLIL 90 >gi|33865191|ref|NP_896750.1| GTP-binding protein EngA [Synechococcus sp. WH 8102] gi|41017009|sp|Q7U8G2|DER_SYNPX RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|33638875|emb|CAE07172.1| putative GTP-binding protein [Synechococcus sp. WH 8102] Length = 455 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSL NA+ + AIV+ I GTTRD + ++ E ++ DTAGIR Sbjct: 179 QMAIIGRPNVGKSSLLNAICGEQRAIVSPIRGTTRDTIDTNIVRENRPWRLVDTAGIRRR 238 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + E GI R+F ++ +D+ +L+ Sbjct: 239 RSVNYGPEYFGINRSFKAIDRSDVCVLV 266 Score = 43.5 bits (101), Expect = 0.070, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 31/61 (50%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+L N L + AIV D PG TRD D K+ DT G+ D Sbjct: 6 VAIIGRPNVGKSTLVNRLCRSREAIVHDEPGVTRDRTYQDGYWGDREFKVVDTGGLVFDD 65 Query: 282 D 282 D Sbjct: 66 D 66 >gi|317178805|dbj|BAJ56593.1| GTP-binding protein EngA [Helicobacter pylori F30] Length = 461 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 11 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 70 ALLSKEIKALNLKAAQMSDLIL 91 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 55/92 (59%), Gaps = 2/92 (2%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSL NAL KK+ ++V+ + GTT D + + + + DTAGIR Sbjct: 201 QVGIIGRVNVGKSSLLNALTKKERSLVSSVAGTTTDPIDETILIGDQKICFVDTAGIRHR 260 Query: 281 DDI--VEKEGIKRTFLEVENADLILLLKEINS 310 I +EK ++RT +E + + LL+ ++++ Sbjct: 261 GKILGIEKYALERTQKALEKSHIALLVLDVSA 292 >gi|308062155|gb|ADO04043.1| GTP-binding protein EngA [Helicobacter pylori Cuz20] Length = 461 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 11 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 70 ALLSKEIKALNLKAAQMSDLIL 91 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 49/178 (27%), Positives = 87/178 (48%), Gaps = 25/178 (14%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSL NAL KK+ ++V+ + GTT D + + + + DTAGIR Sbjct: 201 QVGIIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVDTAGIRHR 260 Query: 281 DDI--VEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330 I +EK ++RT +E + + LL+ ++++ ++ ++ I I K D Sbjct: 261 GKILGIEKYALERTQKALEKSHIALLVLDVSAPFVELDEKISSLADKHSLGIILILNKWD 320 Query: 331 L-YSTYTE------------EYDHLI--SSFTGEGLEELINKIKSILSNKFKKLPFSI 373 + Y+ Y E EY +I S ++E+ +KI + K++P S+ Sbjct: 321 IRYAPYEEIMATLKRKFRFLEYAPVITTSCLKARHIDEIKHKIIEVYECFSKRIPTSL 378 >gi|292806538|gb|ADE42399.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLAREKIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|261837935|gb|ACX97701.1| GTP-binding protein [Helicobacter pylori 51] Length = 461 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 11 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 70 ALLSKEIKALNLKAAQMSDLIL 91 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 55/92 (59%), Gaps = 2/92 (2%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSL NAL KK+ ++V+ + GTT D + + + + DTAGIR Sbjct: 201 QVGIIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVDTAGIRHR 260 Query: 281 DDI--VEKEGIKRTFLEVENADLILLLKEINS 310 I +EK ++RT +E + + LL+ ++++ Sbjct: 261 GKILGIEKYALERTQKALEKSHIALLVLDVSA 292 >gi|225028014|ref|ZP_03717206.1| hypothetical protein EUBHAL_02283 [Eubacterium hallii DSM 3353] gi|224954728|gb|EEG35937.1| hypothetical protein EUBHAL_02283 [Eubacterium hallii DSM 3353] Length = 445 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 1/90 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + ++G N GKS+LFNALA ++IV D PG TRD + ++ Y + DT GI E+ Sbjct: 10 VAVVGRPNVGKSTLFNALAGSRISIVEDTPGVTRDRIYAEVSWLDYQFTLIDTGGIEPES 69 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310 DDI+ ++ + AD+IL L ++ Sbjct: 70 DDIIISRMREQAETAIMTADVILFLVDVRQ 99 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI ++G NAGKSS+ N L ++ IV+ + GTTRD + + G DTAG+R Sbjct: 184 KIAVIGKPNAGKSSIINKLLGEERVIVSPVAGTTRDAIDTTVKRNGQEYVFIDTAGLRRK 243 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 I +E+ I RT VE D+ +L+ Sbjct: 244 SKIKEELERYSIIRTVTAVERCDVAVLI 271 >gi|188527319|ref|YP_001910006.1| GTP-binding protein EngA [Helicobacter pylori Shi470] gi|238691915|sp|B2USZ4|DER_HELPS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|188143559|gb|ACD47976.1| GTP-binding protein EngA [Helicobacter pylori Shi470] Length = 461 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 11 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 70 ALLSKEIKALNLKAAQMSDLIL 91 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 55/92 (59%), Gaps = 2/92 (2%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSL NAL KK+ ++V+ + GTT D + + + + DTAGIR Sbjct: 201 QVGIIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVDTAGIRHR 260 Query: 281 DDI--VEKEGIKRTFLEVENADLILLLKEINS 310 I +EK ++RT +E + + LL+ ++++ Sbjct: 261 GKILGIEKYALERTQKALEKSHIALLVLDVSA 292 >gi|152991112|ref|YP_001356834.1| GTP-binding protein EngA [Nitratiruptor sp. SB155-2] gi|166225831|sp|A6Q4R8|DER_NITSB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|151422973|dbj|BAF70477.1| GTP-binding protein, Era/ThdF family [Nitratiruptor sp. SB155-2] Length = 462 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 40/101 (39%), Positives = 57/101 (56%), Gaps = 2/101 (1%) Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266 I++G+ + N + ILG N GKSSL NAL K++ +IV+D+ GTT D + Sbjct: 182 INEGEKKQEESNEINVAILGRVNVGKSSLLNALLKEERSIVSDVAGTTIDTIDESTIYND 241 Query: 267 YLVKISDTAGIRETDDIV--EKEGIKRTFLEVENADLILLL 305 ++ DTAGIR IV EK + RT +E AD+ LL+ Sbjct: 242 KVITFIDTAGIRRRGKIVGIEKYALNRTQKMLERADVALLV 282 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/86 (41%), Positives = 54/86 (62%), Gaps = 3/86 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI I+G N GKSSLFN + K+ AIV++ GTTRDV + + +I DT GI + Sbjct: 3 KIAIIGKPNVGKSSLFNRILKQRDAIVSETEGTTRDVKRRIVQIGEKEAEILDTGGIEDR 62 Query: 281 DDIVEKEGIKRTFLE-VENADLILLL 305 +++ EK +K+ LE ++AD+IL + Sbjct: 63 NELFEK--VKQKSLEAAKDADIILYM 86 >gi|122701547|emb|CAL88163.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ KE + +DLIL + Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYI 92 >gi|122702223|emb|CAL88302.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122700871|emb|CAL88024.1| GTPase [Helicobacter pylori] gi|122701701|emb|CAL88240.1| GTPase [Helicobacter pylori] gi|122701719|emb|CAL88249.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 4/102 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI 320 ++ KE + +DLIL + K I S ++I + I Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREI 110 >gi|315586500|gb|ADU40881.1| ribosome-associated GTPase EngA [Helicobacter pylori 35A] Length = 461 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 11 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 70 ALLSKEIKALNLKAAQMSDLIL 91 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 55/92 (59%), Gaps = 2/92 (2%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSL NAL KK+ ++V+ + GTT D + + + + DTAGIR Sbjct: 201 QVGIIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVDTAGIRHR 260 Query: 281 DDI--VEKEGIKRTFLEVENADLILLLKEINS 310 I +EK ++RT +E + + LL+ ++++ Sbjct: 261 GKILGIEKYALERTQKALEKSHIALLVLDVSA 292 >gi|292806622|gb|ADE42441.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|292806524|gb|ADE42392.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ KE + +DLIL + Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYI 92 >gi|292806490|gb|ADE42375.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|292806478|gb|ADE42369.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806508|gb|ADE42384.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 4/102 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI 320 ++ KE + +DLIL + K I S ++I + I Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREI 110 >gi|208434748|ref|YP_002266414.1| GTP-binding protein-like protein [Helicobacter pylori G27] gi|238058976|sp|B5Z7J9|DER_HELPG RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|208432677|gb|ACI27548.1| GTP-binding protein-like protein [Helicobacter pylori G27] Length = 460 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 39/98 (39%), Positives = 57/98 (58%), Gaps = 4/98 (4%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 11 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69 Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEISF 316 ++ KE + +DLIL + K I S ++I Sbjct: 70 ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKL 107 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 36/99 (36%), Positives = 58/99 (58%), Gaps = 6/99 (6%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273 EII+ G I+G N GKSSL NAL KK+ ++V+ + GTT D + + + + D Sbjct: 197 EIIQVG----IIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVD 252 Query: 274 TAGIRETDDI--VEKEGIKRTFLEVENADLILLLKEINS 310 TAGIR I +EK ++RT +E + + LL+ ++++ Sbjct: 253 TAGIRHRGKILGIEKYALERTQKALEKSHIALLVLDVSA 291 >gi|122701575|emb|CAL88177.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122701391|emb|CAL88085.1| GTPase [Helicobacter pylori] gi|122701439|emb|CAL88109.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ KE + +DLIL + Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYI 92 >gi|99905867|gb|ABF68628.1| YphC [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|292806554|gb|ADE42407.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806556|gb|ADE42408.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 4/102 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI 320 ++ KE + +DLIL + K I S ++I + I Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREI 110 >gi|300770935|ref|ZP_07080812.1| ribosome-associated GTPase EngA [Sphingobacterium spiritivorum ATCC 33861] gi|300762208|gb|EFK59027.1| ribosome-associated GTPase EngA [Sphingobacterium spiritivorum ATCC 33861] Length = 441 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K I+G N GKSSL NAL KD IVT + GTTRD + I + G+ + DTAG+R Sbjct: 183 KYTIVGRPNVGKSSLTNALLGKDRNIVTPVAGTTRDSIRIHYNQFGHEFLLIDTAGMRRK 242 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E + RT +E++D+++L+ Sbjct: 243 SKVNEDIEFYSVMRTIKALEDSDVVILM 270 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 1/90 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 + I+G N GKS+LFN L + AIV D G TRD + G + DT G + + Sbjct: 13 VAIVGRPNVGKSTLFNRLTESRKAIVDDFSGVTRDRHYESAEWIGKKFTVIDTGGFVHGS 72 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310 DD+ E+ + ++ +E A +I+ + ++ + Sbjct: 73 DDVFEEAIRDQVYIAIEEASVIIFMVDVTT 102 >gi|195954217|gb|ACG58814.1| YphC [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 XLLSKEIKALNLKAAQMSDLIL 90 >gi|122702845|emb|CAL88612.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 52/159 (32%), Positives = 78/159 (49%), Gaps = 18/159 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEIS-----FPKNIDFIFIGTKSD--- 330 ++ KE + +DLIL + K I S ++I F N + + K D Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKTNPNCFLVINKIDNDK 128 Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363 +S++ IS G+ LI+ I S L+ Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALN 167 >gi|122701567|emb|CAL88173.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122701527|emb|CAL88153.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122700677|emb|CAL87927.1| GTPase [Helicobacter pylori] gi|122701411|emb|CAL88095.1| GTPase [Helicobacter pylori] gi|122701429|emb|CAL88104.1| GTPase [Helicobacter pylori] gi|122701497|emb|CAL88138.1| GTPase [Helicobacter pylori] gi|122701601|emb|CAL88190.1| GTPase [Helicobacter pylori] gi|122702695|emb|CAL88537.1| GTPase [Helicobacter pylori] gi|122702873|emb|CAL88626.1| GTPase [Helicobacter pylori] gi|242255826|gb|ACS88897.1| GTPase [Helicobacter pylori] gi|242255930|gb|ACS88949.1| GTPase [Helicobacter pylori] gi|292806510|gb|ADE42385.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806520|gb|ADE42390.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806586|gb|ADE42423.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806646|gb|ADE42453.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122700669|emb|CAL87923.1| GTPase [Helicobacter pylori] gi|122700699|emb|CAL87938.1| GTPase [Helicobacter pylori] gi|122701361|emb|CAL88070.1| GTPase [Helicobacter pylori] gi|122701505|emb|CAL88142.1| GTPase [Helicobacter pylori] gi|122701511|emb|CAL88145.1| GTPase [Helicobacter pylori] gi|122701515|emb|CAL88147.1| GTPase [Helicobacter pylori] gi|122701559|emb|CAL88169.1| GTPase [Helicobacter pylori] gi|122702591|emb|CAL88485.1| GTPase [Helicobacter pylori] gi|122702615|emb|CAL88497.1| GTPase [Helicobacter pylori] gi|122702665|emb|CAL88522.1| GTPase [Helicobacter pylori] gi|122702867|emb|CAL88623.1| GTPase [Helicobacter pylori] gi|122702875|emb|CAL88627.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|99905871|gb|ABF68630.1| YphC [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 4/102 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI 320 ++ KE + +DLIL + K I S ++I + I Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREI 110 >gi|317014244|gb|ADU81680.1| GTP-binding protein Der [Helicobacter pylori Gambia94/24] Length = 463 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 39/98 (39%), Positives = 57/98 (58%), Gaps = 4/98 (4%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 11 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69 Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEISF 316 ++ KE + +DLIL + K I S ++I Sbjct: 70 ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKL 107 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 49/177 (27%), Positives = 86/177 (48%), Gaps = 25/177 (14%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSL NAL KK+ ++V+ + GTT D + + + + DTAGIR Sbjct: 203 QVGIIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVDTAGIRHR 262 Query: 281 DDI--VEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330 I +EK ++RT +E + + LL+ ++++ ++ ++ I I K D Sbjct: 263 GKILGIEKYALERTQKALEKSHIALLVLDVSAPFVELDEKISSLADKHSLGIILILNKWD 322 Query: 331 L-YSTYTE------------EYDHLI--SSFTGEGLEELINKIKSILSNKFKKLPFS 372 + Y+ Y E EY +I S ++E+ +KI + K++P S Sbjct: 323 IRYAPYEEIMATLKRKFRFLEYAPVITTSCLKARHMDEIKHKIIEVYECFSKRIPTS 379 >gi|292806452|gb|ADE42356.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 TLLSKEIKALNLKAAQMSDLIL 90 >gi|228470615|ref|ZP_04055472.1| ribosome-associated GTPase EngA [Porphyromonas uenonis 60-3] gi|228307742|gb|EEK16718.1| ribosome-associated GTPase EngA [Porphyromonas uenonis 60-3] Length = 436 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 79/168 (47%), Gaps = 18/168 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 + I+G N GKS+LFN L + AIVTD GTTRD + I DT G + + Sbjct: 5 VAIVGRPNVGKSTLFNRLTRSRQAIVTDEAGTTRDRQYGHVTWCERTFSIVDTGGWVLRS 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEISF---PKNIDFIFIGTKSDLY 332 DD+ E+E K+ + VE ADLIL + +I + EI+ + I + K+D + Sbjct: 65 DDVFEEEINKQVRIAVEEADLILFVVDILNGVTDLDDEIALMLRQTSKPVILVANKADNF 124 Query: 333 STYTEEYD---------HLISSFTGEGLEELINKIKSILSNKFKKLPF 371 + + + + H IS+ G +L++ I +L + P Sbjct: 125 TQHNDAAEFYSLGLGDPHPISAINGSSTGDLLDHILGLLPKEGNHEPL 172 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + I+G NAGKSSL NAL ++ IVTD GTTRD + + D + DTAGIR+ Sbjct: 177 RFAIVGRPNAGKSSLLNALIGEERNIVTDRSGTTRDSIFAEYDKYNQHFYLVDTAGIRKK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E + R +ENAD+ ++L Sbjct: 237 GKVNEDLEYYSVIRAIRAIENADVCIML 264 >gi|242309125|ref|ZP_04808280.1| GTP-binding protein engA [Helicobacter pullorum MIT 98-5489] gi|239524166|gb|EEQ64032.1| GTP-binding protein engA [Helicobacter pullorum MIT 98-5489] Length = 461 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 36/84 (42%), Positives = 50/84 (59%), Gaps = 1/84 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G NAGKSSLFN K +AI +++ GTTRDV ++ + + DT GI ++D Sbjct: 8 IAIMGRPNAGKSSLFNRFCKSRIAITSEVAGTTRDVKKANILILDTPFLLLDTGGIDQSD 67 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + K + + L ENADLIL L Sbjct: 68 SLFAKVS-EHSHLAGENADLILYL 90 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/86 (39%), Positives = 53/86 (61%), Gaps = 2/86 (2%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKSSL NAL K++ ++V+++ GTT D + ++EG V DTAGIR Sbjct: 200 IGIIGRVNVGKSSLLNALLKQERSVVSEVAGTTIDPVDEKGEIEGRRVNFVDTAGIRRRG 259 Query: 282 DI--VEKEGIKRTFLEVENADLILLL 305 I +EK + RT ++ D+++L+ Sbjct: 260 KIEGLEKFALNRTREVLKRTDIVILV 285 >gi|122701393|emb|CAL88086.1| GTPase [Helicobacter pylori] gi|122702681|emb|CAL88530.1| GTPase [Helicobacter pylori] gi|242255958|gb|ACS88963.1| GTPase [Helicobacter pylori] gi|242255960|gb|ACS88964.1| GTPase [Helicobacter pylori] gi|292806426|gb|ADE42343.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 4/102 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI 320 ++ KE + +DLIL + K I S ++I + I Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREI 110 >gi|122701449|emb|CAL88114.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122701487|emb|CAL88133.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702311|emb|CAL88346.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ KE + +DLIL + Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYI 92 >gi|122701593|emb|CAL88186.1| GTPase [Helicobacter pylori] gi|122702727|emb|CAL88553.1| GTPase [Helicobacter pylori] gi|242255950|gb|ACS88959.1| GTPase [Helicobacter pylori] gi|292806416|gb|ADE42338.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122700707|emb|CAL87942.1| GTPase [Helicobacter pylori] gi|122700725|emb|CAL87951.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|17826782|emb|CAD18957.1| GTP-binding protein [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|16761434|ref|NP_457051.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29140869|ref|NP_804211.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213161952|ref|ZP_03347662.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213425335|ref|ZP_03358085.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213609480|ref|ZP_03369306.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213861384|ref|ZP_03385854.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289825430|ref|ZP_06544667.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|26006725|sp|Q8Z4P6|DER_SALTI RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|25328266|pir||AF0821 probable GTP-binding protein STY2764 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503734|emb|CAD02722.1| putative GTP-binding protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29136494|gb|AAO68060.1| putative GTP-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 490 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 62/98 (63%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ + + DTAG+R+ Sbjct: 204 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRKR 263 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D VEK + +T +E+A+++LL+ I++++ IS Sbjct: 264 GKITDAVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 299 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 D VE +++ L +E AD++L + Sbjct: 65 DGVETRMAEQSLLAIEEADVVLFM 88 >gi|332673360|gb|AEE70177.1| ribosome-associated GTPase EngA [Helicobacter pylori 83] Length = 460 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 11 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 70 ALLSKEIKALNLKAAQMSDLIL 91 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 44/146 (30%), Positives = 73/146 (50%), Gaps = 24/146 (16%) Query: 167 HIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILG 226 ++ IE DLD E ++N + KE + E+I+ G I+G Sbjct: 168 NLNQIIEQDLDADILESLENNAPKEETKE------------------EVIQVG----IIG 205 Query: 227 HSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI--V 284 N GKSSL NAL KK+ ++V+ + GTT D + + + + DTAGIR I + Sbjct: 206 RVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVDTAGIRHRGKILGI 265 Query: 285 EKEGIKRTFLEVENADLILLLKEINS 310 EK ++RT +E + + LL+ ++++ Sbjct: 266 EKYALERTQKALEKSHIALLVLDVST 291 >gi|292806576|gb|ADE42418.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702595|emb|CAL88487.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ KE + +DLIL + Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYI 92 >gi|122701671|emb|CAL88225.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 4/102 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI 320 ++ KE + +DLIL + K I S ++I + I Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREI 110 >gi|122701603|emb|CAL88191.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122701345|emb|CAL88062.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ KE + +DLIL + Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYI 92 >gi|122702129|emb|CAL88255.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122701641|emb|CAL88210.1| GTPase [Helicobacter pylori] gi|122702203|emb|CAL88292.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702131|emb|CAL88256.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ KE + +DLIL + Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYI 92 >gi|93004282|gb|ABE97061.1| YphC [Helicobacter pylori] gi|122701353|emb|CAL88066.1| GTPase [Helicobacter pylori] gi|122701445|emb|CAL88112.1| GTPase [Helicobacter pylori] gi|317452817|emb|CBL87844.1| GTP-binding protein-like protein [Helicobacter pylori] gi|317453541|emb|CBL87880.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|4467655|emb|CAB37779.1| GTP-binding protein homologue [Helicobacter pylori] gi|122701539|emb|CAL88159.1| GTPase [Helicobacter pylori] gi|242255860|gb|ACS88914.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|305666364|ref|YP_003862651.1| GTP-binding protein EngA [Maribacter sp. HTCC2170] gi|88708356|gb|EAR00593.1| GTP-binding protein EngA [Maribacter sp. HTCC2170] Length = 496 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G NAGKSS NAL ++ IVTDI GTTRD + + G+ + DTAGIR Sbjct: 237 RFAVVGRPNAGKSSFINALIGEERYIVTDIAGTTRDSIDTKYNRFGFEFNLVDTAGIRRK 296 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E + R+ +E++D+ LLL Sbjct: 297 SKVKEDLEFYSVMRSVRAIEHSDVCLLL 324 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 36/108 (33%), Positives = 55/108 (50%), Gaps = 1/108 (0%) Query: 204 SSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD 263 SS+I+ R + I+G N GKS+ FN L ++ AIV + G TRD D Sbjct: 49 SSNINGTFAANYSRMSAIVAIVGRPNVGKSTFFNRLIQRREAIVDAVSGVTRDRHYGKSD 108 Query: 264 LEGYLVKISDTAG-IRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310 G I DT G + +DDI E+E K+ L +E AD ++ + ++ + Sbjct: 109 WNGKEFSIIDTGGYVVGSDDIFEQEIDKQVELAIEEADALIFMVDVET 156 >gi|317453537|emb|CBL87878.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 52/159 (32%), Positives = 78/159 (49%), Gaps = 18/159 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEIS-----FPKNIDFIFIGTKSD--- 330 ++ KE + +DLIL + K I S ++I F N + + K D Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKTNPNCFLVINKIDNDK 128 Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363 +S++ IS G+ LI+ I S L+ Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALN 167 >gi|292806500|gb|ADE42380.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 4/102 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI 320 ++ KE + +DLIL + K I S ++I + I Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREI 110 >gi|325681451|ref|ZP_08160977.1| ribosome biogenesis GTPase Der [Ruminococcus albus 8] gi|324106941|gb|EGC01231.1| ribosome biogenesis GTPase Der [Ruminococcus albus 8] Length = 443 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 36/89 (40%), Positives = 54/89 (60%), Gaps = 5/89 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRE 279 K+ ++G N GKSSL N + ++ IV+DI GTTRD D++ E G V I DTAGIR Sbjct: 179 KVAVIGKPNVGKSSLINRICGEERVIVSDIAGTTRDATDTDIENEFGKFVFI-DTAGIRR 237 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLL 305 + VEK + R ++ V+ AD+ +++ Sbjct: 238 KSKVLETVEKYSVLRAYMAVDRADVAVIV 266 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 55/90 (61%), Gaps = 1/90 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + ++G N GKS+LFN L + ++IV D PG TRD + + G + DT GI E+ Sbjct: 6 VAVVGRPNVGKSTLFNKLIGQRLSIVEDTPGVTRDRIYGKCEWLGREFMLVDTGGIEPES 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310 DDI+ + +++ L + +A++I+L+ +I S Sbjct: 66 DDIILSQMRRQSELAITSANVIILVTDIKS 95 >gi|242255888|gb|ACS88928.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ KE + +DLIL + Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYI 92 >gi|122702849|emb|CAL88614.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 TLLSKEIKALNLKAAQMSDLIL 90 >gi|122702545|emb|CAL88462.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 4/102 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI 320 ++ KE + +DLIL + K I S ++I + I Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREI 110 >gi|122702879|emb|CAL88629.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 TLLSKEIKALNLKAAQMSDLIL 90 >gi|122701589|emb|CAL88184.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ KE + +DLIL + Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYI 92 >gi|122701523|emb|CAL88151.1| GTPase [Helicobacter pylori] gi|122701525|emb|CAL88152.1| GTPase [Helicobacter pylori] gi|122701531|emb|CAL88155.1| GTPase [Helicobacter pylori] gi|122702611|emb|CAL88495.1| GTPase [Helicobacter pylori] gi|122702773|emb|CAL88576.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122700639|emb|CAL87908.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122700683|emb|CAL87930.1| GTPase [Helicobacter pylori] gi|122702235|emb|CAL88308.1| GTPase [Helicobacter pylori] gi|122702661|emb|CAL88520.1| GTPase [Helicobacter pylori] gi|242255832|gb|ACS88900.1| GTPase [Helicobacter pylori] gi|242255862|gb|ACS88915.1| GTPase [Helicobacter pylori] gi|242255864|gb|ACS88916.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|119897222|ref|YP_932435.1| GTP-binding protein EngA [Azoarcus sp. BH72] gi|166224303|sp|A1K3Z3|DER_AZOSB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|119669635|emb|CAL93548.1| probable GTP-binding protein [Azoarcus sp. BH72] Length = 442 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 33/100 (33%), Positives = 59/100 (59%), Gaps = 5/100 (5%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G ++ I+G N GKS+L N L ++ I D+PGTTRD + I + G + DTAG+R Sbjct: 176 GPRVAIVGRPNVGKSTLVNTLLGEERVIAFDMPGTTRDAIAIPFERGGKQYTLIDTAGLR 235 Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + VEK + +T ++ A++++L+ +++ ++IS Sbjct: 236 RRGKVFEAVEKFSVIKTLQAIQEANVVVLV--LDAAQDIS 273 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 38/94 (40%), Positives = 48/94 (51%), Gaps = 19/94 (20%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV-----LTIDLDLEGYLVKISDTAG 276 IV++G N GKS+LFN L K A+V D PG TRD D D YLV DTAG Sbjct: 5 IVLVGRPNVGKSTLFNRLTKTRDALVADQPGLTRDRHYGVGRVGDRD---YLV--VDTAG 59 Query: 277 IRETDDIVEKEGI-----KRTFLEVENADLILLL 305 D V K+GI ++ + AD++L L Sbjct: 60 F----DPVAKDGIMHEMARQAEQAIAEADVLLFL 89 >gi|99905879|gb|ABF68634.1| YphC [Helicobacter pylori] gi|122702729|emb|CAL88554.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 4/102 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI 320 ++ KE + +DLIL + K I S ++I + I Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREI 110 >gi|292806688|gb|ADE42474.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|292806542|gb|ADE42401.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|289677942|ref|ZP_06498832.1| GTP-binding protein EngA [Pseudomonas syringae pv. syringae FF5] Length = 391 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 48/185 (25%), Positives = 84/185 (45%), Gaps = 31/185 (16%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 ++G KI I+G N GKS+L N + +D IV D PGTTRD + I + + DTAG Sbjct: 193 KDGIKIAIIGRPNVGKSTLVNRMLGEDRVIVYDEPGTTRDSIYIPFERNEEKYTLIDTAG 252 Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLLKEIN------------------------ 309 +R+ I VEK + +T +++A++++ + + Sbjct: 253 VRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDAREGVVDHDLNLLGFALEAGRALVIA 312 Query: 310 -SKKEISFPKNIDFIFIGTKSDLYSTYTEEYD-HLISSFTGEGLEELINKIKSILSNKFK 367 +K + P DF+ I + L+ + + D H IS+ G G+ L +++ + Sbjct: 313 LNKWDGMTPGERDFVKIELERRLF--FVDFADIHFISALHGTGVGNLYQSVQNSFKSAVT 370 Query: 368 KLPFS 372 + P S Sbjct: 371 RWPTS 375 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS++FN L + AIV D+ G TRD + +G + DT GI + Sbjct: 5 IALVGRPNVGKSTMFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYILIDTGGISGDE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++++ +++ L +E AD++L L Sbjct: 65 HGMDEKMAEQSLLAIEEADVVLFL 88 >gi|242255948|gb|ACS88958.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ KE + +DLIL + Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYI 92 >gi|122702463|emb|CAL88422.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702871|emb|CAL88625.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702127|emb|CAL88254.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122700805|emb|CAL87991.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 4/102 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI 320 ++ KE + +DLIL + K I S ++I + I Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREI 110 >gi|18075603|emb|CAD11197.1| GTP-binding protein [Helicobacter pylori] gi|122700743|emb|CAL87960.1| GTPase [Helicobacter pylori] gi|122700913|emb|CAL88045.1| GTPase [Helicobacter pylori] gi|122702779|emb|CAL88579.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|77460818|ref|YP_350325.1| GTP-binding protein EngA [Pseudomonas fluorescens Pf0-1] gi|123603396|sp|Q3K7C0|DER_PSEPF RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|77384821|gb|ABA76334.1| GTP-binding protein [Pseudomonas fluorescens Pf0-1] Length = 490 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 47/185 (25%), Positives = 84/185 (45%), Gaps = 31/185 (16%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 ++G KI I+G N GKS+L N + +D IV D PGTTRD + I + + DTAG Sbjct: 193 KDGIKIAIIGRPNVGKSTLVNRMLGEDRVIVYDQPGTTRDSIYIPFERNDEKYTLIDTAG 252 Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLLKEIN------------------------ 309 +R+ I VEK + +T +++A++++ + + Sbjct: 253 VRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDAREGVVDHDLNLLGFALEAGRALVIA 312 Query: 310 -SKKEISFPKNIDFIFIGTKSDLYSTYTEEYD-HLISSFTGEGLEELINKIKSILSNKFK 367 +K + P DF+ + + L+ + + D H IS+ G G+ L +++ + Sbjct: 313 INKWDGMTPSERDFVKVELQRRLF--FVDFADIHFISALHGTGVGNLYASVQNSFKSAVT 370 Query: 368 KLPFS 372 + P S Sbjct: 371 RWPTS 375 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L + AIV D+ G TRD + +G + DT GI + Sbjct: 5 IALVGRPNVGKSTLFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYILIDTGGISGDE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++++ +++ L +E AD++L L Sbjct: 65 HGMDEKMAEQSLLAIEEADVVLFL 88 >gi|16765839|ref|NP_461454.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56412602|ref|YP_149677.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|167549461|ref|ZP_02343220.1| ribosome-associated GTPase EngA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167991827|ref|ZP_02572926.1| ribosome-associated GTPase EngA [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168261443|ref|ZP_02683416.1| ribosome-associated GTPase EngA [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168466731|ref|ZP_02700585.1| ribosome-associated GTPase EngA [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|194446079|ref|YP_002041777.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|197264629|ref|ZP_03164703.1| ribosome-associated GTPase EngA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197361537|ref|YP_002141173.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|238912639|ref|ZP_04656476.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|17865704|sp|Q9XCI8|DER_SALTY RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|81821610|sp|Q5PNI6|DER_SALPA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|238689919|sp|B5BAY9|DER_SALPK RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|238693574|sp|B4T0P5|DER_SALNS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|16421063|gb|AAL21413.1| putative GTP-binding protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56126859|gb|AAV76365.1| putative GTP-binding protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|194404742|gb|ACF64964.1| ribosome-associated GTPase EngA [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|195630729|gb|EDX49321.1| ribosome-associated GTPase EngA [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197093013|emb|CAR58446.1| putative GTP-binding protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197242884|gb|EDY25504.1| ribosome-associated GTPase EngA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205325405|gb|EDZ13244.1| ribosome-associated GTPase EngA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205329876|gb|EDZ16640.1| ribosome-associated GTPase EngA [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205349650|gb|EDZ36281.1| ribosome-associated GTPase EngA [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|261247715|emb|CBG25543.1| GTP-binding protein engA [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994635|gb|ACY89520.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159068|emb|CBW18582.1| GTP-binding protein engA [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913506|dbj|BAJ37480.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320087014|emb|CBY96783.1| GTP-binding protein engA [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321222780|gb|EFX47851.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322613736|gb|EFY10675.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619521|gb|EFY16397.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625026|gb|EFY21855.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629531|gb|EFY26307.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634038|gb|EFY30775.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635524|gb|EFY32235.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639800|gb|EFY36479.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644422|gb|EFY40963.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648567|gb|EFY45016.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655213|gb|EFY51522.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658260|gb|EFY54526.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664261|gb|EFY60458.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669428|gb|EFY65577.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673155|gb|EFY69261.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676547|gb|EFY72615.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683297|gb|EFY79311.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685817|gb|EFY81810.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323130847|gb|ADX18277.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323194760|gb|EFZ79948.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199552|gb|EFZ84643.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204673|gb|EFZ89671.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208121|gb|EFZ93066.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210155|gb|EFZ95056.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217023|gb|EGA01745.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221821|gb|EGA06225.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225000|gb|EGA09255.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229289|gb|EGA13413.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235396|gb|EGA19480.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237418|gb|EGA21481.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245172|gb|EGA29173.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248875|gb|EGA32801.1| GTP-binding protein Der [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253162|gb|EGA36994.1| GTP-binding protein Der [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255396|gb|EGA39164.1| GTP-binding protein Der [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323263529|gb|EGA47056.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266356|gb|EGA49844.1| GTP-binding protein Der [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269813|gb|EGA53263.1| GTP-binding protein Der [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|332989446|gb|AEF08429.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 490 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 62/98 (63%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ + + DTAG+R+ Sbjct: 204 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRKR 263 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D VEK + +T +E+A+++LL+ I++++ IS Sbjct: 264 GKITDAVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 299 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 D VE +++ L +E AD++L + Sbjct: 65 DGVETRMAEQSLLAIEEADVVLFM 88 >gi|317180598|dbj|BAJ58384.1| GTP-binding protein EngA [Helicobacter pylori F32] Length = 459 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 11 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 70 ALLSKEIKALNLKAAQMSDLIL 91 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 49/178 (27%), Positives = 88/178 (49%), Gaps = 25/178 (14%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSL NAL KK+ ++V+ + GTT D + + + + DTAGIR Sbjct: 201 QVGIIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVDTAGIRHR 260 Query: 281 DDI--VEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330 I +EK ++RT +E + ++LL+ ++++ ++ ++ I I K D Sbjct: 261 GKILGIEKYALERTQKALEKSHIVLLVLDVSAPFVELDEKISSLADKHSLGIILILNKWD 320 Query: 331 L-YSTYTE------------EYDHLI--SSFTGEGLEELINKIKSILSNKFKKLPFSI 373 + Y+ Y E EY +I S ++E+ +KI + K++P S+ Sbjct: 321 IRYAPYEEIMATLKRKFRFLEYAPVITTSCLKARHIDEIKHKIIEVYECFSKRIPTSL 378 >gi|308184621|ref|YP_003928754.1| GTP-binding protein EngA [Helicobacter pylori SJM180] gi|308060541|gb|ADO02437.1| GTP-binding protein EngA [Helicobacter pylori SJM180] Length = 462 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 11 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 70 ALLSKEIKALNLKAAQMSDLIL 91 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 53/185 (28%), Positives = 90/185 (48%), Gaps = 29/185 (15%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273 EII+ G I+G N GKSSL NAL KK+ ++V+ + GTT D + + + + D Sbjct: 199 EIIQVG----IIGRVNVGKSSLLNALTKKERSLVSSMAGTTIDPIDETILIGDQKICFVD 254 Query: 274 TAGIRETDDI--VEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFI 323 TAGIR I +EK ++RT +E + + LL+ ++++ ++ ++ I Sbjct: 255 TAGIRHRGKILGIEKYALERTQKALEKSHIALLVLDVSAPFVELDEKISSLADKHSLGII 314 Query: 324 FIGTKSDL-YSTYTE------------EYDHLI--SSFTGEGLEELINKIKSILSNKFKK 368 I K D+ Y+ Y E EY +I S ++E+ +KI + K+ Sbjct: 315 LILNKWDIRYAPYEEIMATLKRKFRFLEYAPVITTSCLKARHIDEIKHKIIEVYECFSKR 374 Query: 369 LPFSI 373 +P S+ Sbjct: 375 IPTSL 379 >gi|292806618|gb|ADE42439.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 4/102 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI 320 ++ KE + +DLIL + K I S ++I + I Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREI 110 >gi|292806570|gb|ADE42415.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|207857927|ref|YP_002244578.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|238690463|sp|B5R578|DER_SALEP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|206709730|emb|CAR34082.1| putative GTP-binding protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 490 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 62/98 (63%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ + + DTAG+R+ Sbjct: 204 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRKR 263 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D VEK + +T +E+A+++LL+ I++++ IS Sbjct: 264 GKITDAVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 299 Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 D VE +++ L +E AD++L + Sbjct: 65 DGVETRMAEQSLLAIEEADVVLFM 88 >gi|122702859|emb|CAL88619.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702393|emb|CAL88387.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122701563|emb|CAL88171.1| GTPase [Helicobacter pylori] gi|122702643|emb|CAL88511.1| GTPase [Helicobacter pylori] gi|122702877|emb|CAL88628.1| GTPase [Helicobacter pylori] gi|242255820|gb|ACS88894.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122701467|emb|CAL88123.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702229|emb|CAL88305.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|292806606|gb|ADE42433.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 51/159 (32%), Positives = 79/159 (49%), Gaps = 18/159 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEIS-----FPKNIDFIFIGTKSD--- 330 ++ KE + +DLIL + K I S ++I F N + + K D Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128 Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363 +S++ IS G+ LI+ + S+L+ Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLSVLN 167 >gi|292806512|gb|ADE42386.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|226954466|ref|ZP_03824930.1| GTP-binding protein EngA [Acinetobacter sp. ATCC 27244] gi|294651482|ref|ZP_06728795.1| GTP-binding protein EngA [Acinetobacter haemolyticus ATCC 19194] gi|226834815|gb|EEH67198.1| GTP-binding protein EngA [Acinetobacter sp. ATCC 27244] gi|292822632|gb|EFF81522.1| GTP-binding protein EngA [Acinetobacter haemolyticus ATCC 19194] Length = 469 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 56/90 (62%), Gaps = 3/90 (3%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G ++ I+G N GKS+L N L ++ + D PGTTRD + I + +G + DTAG+R Sbjct: 176 GLRLAIIGRPNVGKSTLVNRLLGEERVVAFDQPGTTRDSIYIPFERDGRQYTLIDTAGVR 235 Query: 279 ---ETDDIVEKEGIKRTFLEVENADLILLL 305 + D+++EK I +T +++A++++++ Sbjct: 236 RKGKVDEMIEKFSIVKTLQAMKDANVVVIV 265 Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust. Identities = 17/35 (48%), Positives = 22/35 (62%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 I ++G N GKS+LFN + K A+V D G TRD Sbjct: 5 IALIGRPNVGKSTLFNQITKSRDALVADFAGLTRD 39 >gi|217032525|ref|ZP_03438016.1| hypothetical protein HPB128_180g24 [Helicobacter pylori B128] gi|298736539|ref|YP_003729065.1| GTP-binding protein [Helicobacter pylori B8] gi|216945803|gb|EEC24426.1| hypothetical protein HPB128_180g24 [Helicobacter pylori B128] gi|298355729|emb|CBI66601.1| GTP-binding protein [Helicobacter pylori B8] Length = 461 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 11 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 70 ALLSKEIKALNLKAAQMSDLIL 91 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 49/178 (27%), Positives = 87/178 (48%), Gaps = 25/178 (14%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSL NAL KK+ ++V+ + GTT D + + + + DTAGIR Sbjct: 201 QVGIIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVDTAGIRHR 260 Query: 281 DDI--VEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330 I +EK ++RT +E + + LL+ ++++ ++ ++ I I K D Sbjct: 261 GKILGIEKYALERTQKALEKSHIALLVLDVSAPFVELDEKISSLADKHSLGIILILNKWD 320 Query: 331 L-YSTYTE------------EYDHLI--SSFTGEGLEELINKIKSILSNKFKKLPFSI 373 + Y+ Y E EY +I S ++E+ +KI + K++P S+ Sbjct: 321 IRYAPYEEIMATLKRKFRFLEYAPVITTSCLKARHIDEIKHKIIEVYECFSKRIPTSL 378 >gi|205353618|ref|YP_002227419.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|238690507|sp|B5RCY8|DER_SALG2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|205273399|emb|CAR38374.1| putative GTP-binding protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326628718|gb|EGE35061.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 490 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 62/98 (63%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ + + DTAG+R+ Sbjct: 204 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRKR 263 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D VEK + +T +E+A+++LL+ I++++ IS Sbjct: 264 GKITDAVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 299 Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 D VE +++ L +E AD++L + Sbjct: 65 DGVETRMAEQSLLAIEEADVVLFM 88 >gi|122702669|emb|CAL88524.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702719|emb|CAL88549.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 TLLSKEIKALNLKAAQMSDLIL 90 >gi|122701675|emb|CAL88227.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ KE + +DLIL + Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYI 92 >gi|122700689|emb|CAL87933.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|62181086|ref|YP_217503.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224582944|ref|YP_002636742.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|81309623|sp|Q57LJ0|DER_SALCH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|254783165|sp|C0PYN4|DER_SALPC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|62128719|gb|AAX66422.1| putative GTP-binding protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224467471|gb|ACN45301.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322715573|gb|EFZ07144.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 490 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 62/98 (63%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ + + DTAG+R+ Sbjct: 204 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRKR 263 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D VEK + +T +E+A+++LL+ I++++ IS Sbjct: 264 GKITDAVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 299 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 D VE +++ L +E AD++L + Sbjct: 65 DGVETRMAEQSLLAIEEADVVLFM 88 >gi|32455227|gb|AAP83329.1| putative GTP-binding protein [Salmonella enterica subsp. enterica serovar Enteritidis] Length = 490 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 62/98 (63%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ + + DTAG+R+ Sbjct: 204 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRKR 263 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D VEK + +T +E+A+++LL+ I++++ IS Sbjct: 264 GKITDAVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 299 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 D VE +++ L +E AD++L + Sbjct: 65 DGVETRMAEQSLLAIEEADVVLFM 88 >gi|317453515|emb|CBL87867.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 TLLSKEIKALNLKAAQMSDLIL 90 >gi|292806428|gb|ADE42344.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|242255822|gb|ACS88895.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|226328000|ref|ZP_03803518.1| hypothetical protein PROPEN_01891 [Proteus penneri ATCC 35198] gi|225203704|gb|EEG86058.1| hypothetical protein PROPEN_01891 [Proteus penneri ATCC 35198] Length = 343 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 36/98 (36%), Positives = 61/98 (62%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + +D +V D+PGTTRD + I ++ + I DTAG+R+ Sbjct: 57 KLAIVGRPNVGKSTLTNRMLGEDRVVVYDMPGTTRDSIYIPMERDDKDYIIIDTAGVRKR 116 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + VEK + +T +E+A++ LL+ I++++ IS Sbjct: 117 GKVKETVEKFSVIKTLQAIEDANVALLV--IDAREGIS 152 >gi|160890563|ref|ZP_02071566.1| hypothetical protein BACUNI_03006 [Bacteroides uniformis ATCC 8492] gi|270295703|ref|ZP_06201903.1| ribosome-associated GTPase EngA [Bacteroides sp. D20] gi|317479893|ref|ZP_07939009.1| ribosome-associated GTPase EngA [Bacteroides sp. 4_1_36] gi|156859562|gb|EDO52993.1| hypothetical protein BACUNI_03006 [Bacteroides uniformis ATCC 8492] gi|270273107|gb|EFA18969.1| ribosome-associated GTPase EngA [Bacteroides sp. D20] gi|316903940|gb|EFV25778.1| ribosome-associated GTPase EngA [Bacteroides sp. 4_1_36] Length = 437 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 53/88 (60%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G NAGKSS+ NA +D IVT+I GTTRD + + G+ + DTAGIR+ Sbjct: 177 RFAVVGRPNAGKSSIVNAFIGEDRNIVTEIAGTTRDSIYTRYNKFGFDFYLVDTAGIRKK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + + +E + R+ +ENAD+ +L+ Sbjct: 237 NKVNEDLEYYSVIRSIRSIENADVCILM 264 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 35/91 (38%), Positives = 51/91 (56%), Gaps = 1/91 (1%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277 G + I+G N GKS+LFN L K AIV + GTTRD + G + DT G + Sbjct: 2 GNLVAIVGRPNVGKSTLFNRLTKTRQAIVNEEAGTTRDRQYGKTEWLGREFSVVDTGGWV 61 Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEI 308 +DDI E+E K+ + V+ AD+IL + ++ Sbjct: 62 VNSDDIFEEEIRKQVLMAVDEADVILFVVDV 92 >gi|122702751|emb|CAL88565.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702571|emb|CAL88475.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702633|emb|CAL88506.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122701335|emb|CAL88057.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122701637|emb|CAL88208.1| GTPase [Helicobacter pylori] gi|122701643|emb|CAL88211.1| GTPase [Helicobacter pylori] gi|122701645|emb|CAL88212.1| GTPase [Helicobacter pylori] gi|122701659|emb|CAL88219.1| GTPase [Helicobacter pylori] gi|122701661|emb|CAL88220.1| GTPase [Helicobacter pylori] gi|122701663|emb|CAL88221.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122700917|emb|CAL88047.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122700785|emb|CAL87981.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 4/102 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI 320 ++ KE + +DLIL + K I S ++I + I Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREI 110 >gi|122700691|emb|CAL87934.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122700685|emb|CAL87931.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122700645|emb|CAL87911.1| GTPase [Helicobacter pylori] gi|122702599|emb|CAL88489.1| GTPase [Helicobacter pylori] gi|122702781|emb|CAL88580.1| GTPase [Helicobacter pylori] gi|122702785|emb|CAL88582.1| GTPase [Helicobacter pylori] gi|242255848|gb|ACS88908.1| GTPase [Helicobacter pylori] gi|242255854|gb|ACS88911.1| GTPase [Helicobacter pylori] gi|242255870|gb|ACS88919.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|99905877|gb|ABF68633.1| YphC [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|99905851|gb|ABF68620.1| YphC [Helicobacter pylori] gi|122700757|emb|CAL87967.1| GTPase [Helicobacter pylori] gi|122700893|emb|CAL88035.1| GTPase [Helicobacter pylori] gi|122701347|emb|CAL88063.1| GTPase [Helicobacter pylori] gi|122702159|emb|CAL88270.1| GTPase [Helicobacter pylori] gi|122702165|emb|CAL88273.1| GTPase [Helicobacter pylori] gi|122702243|emb|CAL88312.1| GTPase [Helicobacter pylori] gi|122702253|emb|CAL88317.1| GTPase [Helicobacter pylori] gi|122702257|emb|CAL88319.1| GTPase [Helicobacter pylori] gi|122702351|emb|CAL88366.1| GTPase [Helicobacter pylori] gi|122702359|emb|CAL88370.1| GTPase [Helicobacter pylori] gi|122702371|emb|CAL88376.1| GTPase [Helicobacter pylori] gi|122702385|emb|CAL88383.1| GTPase [Helicobacter pylori] gi|122702627|emb|CAL88503.1| GTPase [Helicobacter pylori] gi|242255952|gb|ACS88960.1| GTPase [Helicobacter pylori] gi|292806456|gb|ADE42358.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806540|gb|ADE42400.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806544|gb|ADE42402.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806630|gb|ADE42445.1| GTP-binding protein-like protein [Helicobacter pylori] gi|317452827|emb|CBL87849.1| GTP-binding protein-like protein [Helicobacter pylori] gi|317453507|emb|CBL87863.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|4467665|emb|CAB37784.1| GTP-binding protein homologue [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 39/83 (46%), Positives = 55/83 (66%), Gaps = 3/83 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEV-ENADLIL 303 ++ KE IK L+V + +DLIL Sbjct: 69 ALLSKE-IKALNLKVAQMSDLIL 90 >gi|4467651|emb|CAB37777.1| GTP-binding protein homologue [Helicobacter pylori] gi|122701565|emb|CAL88172.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|242255968|gb|ACS88968.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKSLNLKAAQMSDLIL 90 >gi|242255956|gb|ACS88962.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ KE + +DLIL + Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYV 92 >gi|242255858|gb|ACS88913.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702551|emb|CAL88465.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702717|emb|CAL88548.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ KE + +DLIL + Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYI 92 >gi|122702829|emb|CAL88604.1| GTPase [Helicobacter pylori] gi|195954197|gb|ACG58804.1| YphC [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 TLLSKEIKALNLKAAQMSDLIL 90 >gi|122700623|emb|CAL87900.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKSLNLKAAQMSDLIL 90 >gi|122700663|emb|CAL87920.1| GTPase [Helicobacter pylori] gi|122701585|emb|CAL88182.1| GTPase [Helicobacter pylori] gi|122701587|emb|CAL88183.1| GTPase [Helicobacter pylori] gi|292806594|gb|ADE42427.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806596|gb|ADE42428.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122700635|emb|CAL87906.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKSLNLKAAQMSDLIL 90 >gi|325272131|ref|ZP_08138563.1| GTP-binding protein Der [Pseudomonas sp. TJI-51] gi|324102727|gb|EGC00142.1| GTP-binding protein Der [Pseudomonas sp. TJI-51] Length = 487 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 55/92 (59%), Gaps = 3/92 (3%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 ++G KI I+G N GKS+L N + ++ +V D PGTTRD + I + +G DTAG Sbjct: 190 KDGIKIAIIGRPNVGKSTLVNRMLGEERVVVYDQPGTTRDSIYIPFERDGEKYTFIDTAG 249 Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLL 305 +R+ I VEK + +T +++A++++ + Sbjct: 250 VRKRGKIHEEVEKFSVVKTLQAIKDANVVIFV 281 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS++FN L K AIV D+ G TRD D +G + DT GI + Sbjct: 5 IALVGRPNVGKSTMFNRLTKTRDAIVGDLSGLTRDRQYGDASWQGRSFILIDTGGITGDE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++++ +++ + +E AD +L L Sbjct: 65 VGMDEKMAEQSLMAIEEADYVLFL 88 >gi|317452853|emb|CBL87862.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|302342246|ref|YP_003806775.1| ribosome-associated GTPase EngA [Desulfarculus baarsii DSM 2075] gi|301638859|gb|ADK84181.1| ribosome-associated GTPase EngA [Desulfarculus baarsii DSM 2075] Length = 479 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 51/90 (56%), Gaps = 3/90 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ ++G N GKSSL NAL +V+D+PGTTRD + + + I DTAGIR Sbjct: 210 RVALIGRPNVGKSSLLNALFGGPRVVVSDVPGTTRDAVDTPIQVGDKKYVIIDTAGIRRR 269 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKE 307 + +EK G+ R+ ++ A +++ + E Sbjct: 270 GKVAPGIEKAGVFRSLRAIDRAHVVVAMME 299 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RET 280 + I+G N GKS+LFN L + A+V D+PG TRD L ++ V + DT G Sbjct: 5 MAIVGRPNVGKSTLFNRLTRTRQALVHDLPGVTRDRLYGRAIIDDRQVTVIDTGGFDPPA 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 D E + + +E ADLIL + Sbjct: 65 DQPFAAEVHAQIAMAMEEADLILFV 89 >gi|161612723|ref|YP_001586688.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|189037158|sp|A9N205|DER_SALPB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|161362087|gb|ABX65855.1| hypothetical protein SPAB_00422 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 490 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 62/98 (63%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ + + DTAG+R+ Sbjct: 204 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRKR 263 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D VEK + +T +E+A+++LL+ I++++ IS Sbjct: 264 GKITDAVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 299 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 D VE +++ L +E AD++L + Sbjct: 65 DGVETRMAEQSLLAIEEADVVLFM 88 >gi|122702883|emb|CAL88631.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702123|emb|CAL88252.1| GTPase [Helicobacter pylori] gi|122702555|emb|CAL88467.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702149|emb|CAL88265.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702185|emb|CAL88283.1| GTPase [Helicobacter pylori] gi|122702721|emb|CAL88550.1| GTPase [Helicobacter pylori] gi|292806450|gb|ADE42355.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806462|gb|ADE42361.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806468|gb|ADE42364.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806616|gb|ADE42438.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122701617|emb|CAL88198.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702233|emb|CAL88307.1| GTPase [Helicobacter pylori] gi|122702601|emb|CAL88490.1| GTPase [Helicobacter pylori] gi|122702603|emb|CAL88491.1| GTPase [Helicobacter pylori] gi|122702609|emb|CAL88494.1| GTPase [Helicobacter pylori] gi|122702671|emb|CAL88525.1| GTPase [Helicobacter pylori] gi|122702673|emb|CAL88526.1| GTPase [Helicobacter pylori] gi|122702847|emb|CAL88613.1| GTPase [Helicobacter pylori] gi|122702863|emb|CAL88621.1| GTPase [Helicobacter pylori] gi|122702885|emb|CAL88632.1| GTPase [Helicobacter pylori] gi|242255866|gb|ACS88917.1| GTPase [Helicobacter pylori] gi|242255868|gb|ACS88918.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122700719|emb|CAL87948.1| GTPase [Helicobacter pylori] gi|292806668|gb|ADE42464.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806676|gb|ADE42468.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122700653|emb|CAL87915.1| GTPase [Helicobacter pylori] gi|122700671|emb|CAL87924.1| GTPase [Helicobacter pylori] gi|122701499|emb|CAL88139.1| GTPase [Helicobacter pylori] gi|122701605|emb|CAL88192.1| GTPase [Helicobacter pylori] gi|122701609|emb|CAL88194.1| GTPase [Helicobacter pylori] gi|242255850|gb|ACS88909.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122700675|emb|CAL87926.1| GTPase [Helicobacter pylori] gi|122701503|emb|CAL88141.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|18075557|emb|CAD11174.1| GTP-binding protein [Helicobacter pylori] gi|122700659|emb|CAL87918.1| GTPase [Helicobacter pylori] gi|122700771|emb|CAL87974.1| GTPase [Helicobacter pylori] gi|122700915|emb|CAL88046.1| GTPase [Helicobacter pylori] gi|122701325|emb|CAL88052.1| GTPase [Helicobacter pylori] gi|122701383|emb|CAL88081.1| GTPase [Helicobacter pylori] gi|122701549|emb|CAL88164.1| GTPase [Helicobacter pylori] gi|122701561|emb|CAL88170.1| GTPase [Helicobacter pylori] gi|122701705|emb|CAL88242.1| GTPase [Helicobacter pylori] gi|122702473|emb|CAL88427.1| GTPase [Helicobacter pylori] gi|122702559|emb|CAL88469.1| GTPase [Helicobacter pylori] gi|122702651|emb|CAL88515.1| GTPase [Helicobacter pylori] gi|122702659|emb|CAL88519.1| GTPase [Helicobacter pylori] gi|122702723|emb|CAL88551.1| GTPase [Helicobacter pylori] gi|122702775|emb|CAL88577.1| GTPase [Helicobacter pylori] gi|122702817|emb|CAL88598.1| GTPase [Helicobacter pylori] gi|122702861|emb|CAL88620.1| GTPase [Helicobacter pylori] gi|242255846|gb|ACS88907.1| GTPase [Helicobacter pylori] gi|242255942|gb|ACS88955.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|330874711|gb|EGH08860.1| GTP-binding protein Der [Pseudomonas syringae pv. glycinea str. race 4] Length = 440 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 48/185 (25%), Positives = 84/185 (45%), Gaps = 31/185 (16%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 ++G KI I+G N GKS+L N + +D IV D PGTTRD + I + + DTAG Sbjct: 193 KDGIKIAIIGRPNVGKSTLVNRMLGEDRVIVYDEPGTTRDSIYIPFERNEEKYTLIDTAG 252 Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLLKEIN------------------------ 309 +R+ I VEK + +T +++A++++ + + Sbjct: 253 VRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDAREGVVDHDLNLLGFALEAGRALVIA 312 Query: 310 -SKKEISFPKNIDFIFIGTKSDLYSTYTEEYD-HLISSFTGEGLEELINKIKSILSNKFK 367 +K + P DF+ I + L+ + + D H IS+ G G+ L +++ + Sbjct: 313 LNKWDGMTPGERDFVKIELERRLF--FVDFADIHFISAMHGTGVGNLYQSVQNSFKSAVT 370 Query: 368 KLPFS 372 + P S Sbjct: 371 RWPTS 375 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS++FN L + AIV D+ G TRD + +G + DT GI + Sbjct: 5 IALVGRPNVGKSTMFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYILIDTGGISGDE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++++ +++ L +E AD++L L Sbjct: 65 HGMDEKMAEQSLLAIEEADVVLFL 88 >gi|317453539|emb|CBL87879.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 TLLSKEIKALNLKAAQMSDLIL 90 >gi|307637526|gb|ADN79976.1| GTP-binding protein [Helicobacter pylori 908] gi|325996115|gb|ADZ51520.1| GTP-binding protein [Helicobacter pylori 2018] gi|325997711|gb|ADZ49919.1| GTP-binding protein [Helicobacter pylori 2017] Length = 462 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 11 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 70 ALLSKEIKALNLKAAQMSDLIL 91 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/99 (36%), Positives = 57/99 (57%), Gaps = 6/99 (6%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273 EII+ G I+G N GKSSL NAL KK+ ++V+ + GTT D + + + + D Sbjct: 199 EIIQVG----IIGRVNVGKSSLLNALTKKERSLVSSMAGTTIDPIDETILIGDQKICFVD 254 Query: 274 TAGIRETDDI--VEKEGIKRTFLEVENADLILLLKEINS 310 TAGIR I +EK + RT +E + + LL+ ++++ Sbjct: 255 TAGIRHRGKILGIEKYALDRTKKALEKSHIALLVLDVSA 293 >gi|295085093|emb|CBK66616.1| iron-only hydrogenase maturation protein HydF [Bacteroides xylanisolvens XB1A] Length = 396 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 56/166 (33%), Positives = 84/166 (50%), Gaps = 18/166 (10%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276 N I + G N+GKSSL NAL +D+A+V++ PGTT D+++ ++++G DT G Sbjct: 10 NRLHITLFGRRNSGKSSLINALTGQDIALVSNTPGTTTDLVSKAMEIQGIGPCLFIDTPG 69 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISF---PKNIDFIFIGTK-- 328 + ++ E I RT +E D+ LLL E + +KEI KNI I + K Sbjct: 70 FDDEGELGELR-ISRTLKAIEKTDIALLLCEDTTFFHEKEILALLKEKNIPVIPVLNKID 128 Query: 329 ----SDLYSTYTEE----YDHLISSFTGEGLEELINKIKSILSNKF 366 SD +TY EE + LIS+ G+E + I L + F Sbjct: 129 IRENSDHLATYIEEQCKIHPLLISAKEKIGIELIRQAILEKLPSDF 174 >gi|262374928|ref|ZP_06068162.1| ribosome-associated GTPase EngA [Acinetobacter lwoffii SH145] gi|262309941|gb|EEY91070.1| ribosome-associated GTPase EngA [Acinetobacter lwoffii SH145] Length = 469 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 56/90 (62%), Gaps = 3/90 (3%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G ++ I+G N GKS+L N L ++ + D PGTTRD + I + +G + DTAG+R Sbjct: 176 GLRLAIIGRPNVGKSTLVNRLLGEERVVAFDQPGTTRDSIYIPFERDGRQYTLIDTAGVR 235 Query: 279 ---ETDDIVEKEGIKRTFLEVENADLILLL 305 + D+++EK I +T +++A++I+++ Sbjct: 236 RKGKVDEMIEKFSIVKTLQAMKDANVIVVV 265 Score = 38.1 bits (87), Expect = 2.7, Method: Compositional matrix adjust. Identities = 17/35 (48%), Positives = 22/35 (62%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 I ++G N GKS+LFN + K A+V D G TRD Sbjct: 5 IALIGRPNVGKSTLFNQITKSRDALVADFAGLTRD 39 >gi|254779193|ref|YP_003057298.1| GTP-binding protein EngA [Helicobacter pylori B38] gi|254001104|emb|CAX29059.1| Putative GTP-binding protein, EngA family [Helicobacter pylori B38] Length = 461 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 39/98 (39%), Positives = 57/98 (58%), Gaps = 4/98 (4%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 11 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69 Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEISF 316 ++ KE + +DLIL + K I S ++I Sbjct: 70 ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKL 107 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 49/178 (27%), Positives = 87/178 (48%), Gaps = 25/178 (14%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSL NAL KK+ ++V+ + GTT D + + + + DTAGIR Sbjct: 201 QVGIIGRVNVGKSSLLNALTKKERSLVSSMAGTTIDPIDETILIGDQKICFVDTAGIRHR 260 Query: 281 DDI--VEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330 I +EK ++RT +E + + LL+ ++++ ++ ++ I I K D Sbjct: 261 GKILGIEKYALERTQKALEKSHIALLVLDVSAPFVELDEKISSLADKHSLGIILILNKWD 320 Query: 331 L-YSTYTE------------EYDHLI--SSFTGEGLEELINKIKSILSNKFKKLPFSI 373 + Y+ Y E EY +I S ++E+ +KI + K++P S+ Sbjct: 321 IRYAPYEEIMATLKRKFRFLEYAPVITTSCLKARHIDEIKHKIIEVYECFSKRIPTSL 378 >gi|189502515|ref|YP_001958232.1| GTP-binding protein EngA [Candidatus Amoebophilus asiaticus 5a2] gi|238692314|sp|B3ETF1|DER_AMOA5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|189497956|gb|ACE06503.1| hypothetical protein Aasi_1169 [Candidatus Amoebophilus asiaticus 5a2] Length = 433 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI ILG N GKSSL NAL ++ +IVT I GTTRD + +L G ++DTAGIR+ Sbjct: 175 KIAILGRPNVGKSSLLNALLGEERSIVTPIAGTTRDAIDTTYNLYGKNFILTDTAGIRKK 234 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E R +++AD+ +++ Sbjct: 235 SKVKEDIEFYSTLRALKALQDADVCIIM 262 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 + I+G N GKS+LFN L ++ AI+ GTTRD G + DT G ++ + Sbjct: 5 VAIVGRPNVGKSTLFNRLVEERKAIMASESGTTRDRHYGYATWNGKNFTVVDTGGYVQGS 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 DI EK ++ + +E A ++L + Sbjct: 65 SDIFEKSICEQAKIAIEEASVVLFM 89 >gi|122702605|emb|CAL88492.1| GTPase [Helicobacter pylori] gi|242255882|gb|ACS88925.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122701577|emb|CAL88178.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122701651|emb|CAL88215.1| GTPase [Helicobacter pylori] gi|122701653|emb|CAL88216.1| GTPase [Helicobacter pylori] gi|122701669|emb|CAL88224.1| GTPase [Helicobacter pylori] gi|122702187|emb|CAL88284.1| GTPase [Helicobacter pylori] gi|122702191|emb|CAL88286.1| GTPase [Helicobacter pylori] gi|122702197|emb|CAL88289.1| GTPase [Helicobacter pylori] gi|122702201|emb|CAL88291.1| GTPase [Helicobacter pylori] gi|122702685|emb|CAL88532.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122701409|emb|CAL88094.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122701473|emb|CAL88126.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702247|emb|CAL88314.1| GTPase [Helicobacter pylori] gi|122702289|emb|CAL88335.1| GTPase [Helicobacter pylori] gi|122702401|emb|CAL88391.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKITLNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122700909|emb|CAL88043.1| GTPase [Helicobacter pylori] gi|122702283|emb|CAL88332.1| GTPase [Helicobacter pylori] gi|122702285|emb|CAL88333.1| GTPase [Helicobacter pylori] gi|122702299|emb|CAL88340.1| GTPase [Helicobacter pylori] gi|122702325|emb|CAL88353.1| GTPase [Helicobacter pylori] gi|122702765|emb|CAL88572.1| GTPase [Helicobacter pylori] gi|292806472|gb|ADE42366.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806578|gb|ADE42419.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806702|gb|ADE42481.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 4/102 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI 320 ++ KE + +DLIL + K I S ++I + I Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREI 110 >gi|122700655|emb|CAL87916.1| GTPase [Helicobacter pylori] gi|122702851|emb|CAL88615.1| GTPase [Helicobacter pylori] gi|122702855|emb|CAL88617.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122700723|emb|CAL87950.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 51/158 (32%), Positives = 78/158 (49%), Gaps = 18/158 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEIS-----FPKNIDFIFIGTKSD--- 330 ++ KE + +DLIL + K I S +++ F N + + K D Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128 Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362 +S++ IS G+ LI+ I S+L Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSVL 166 >gi|18075571|emb|CAD11181.1| GTP-binding protein [Helicobacter pylori] gi|122702803|emb|CAL88591.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|292806410|gb|ADE42335.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|237654043|ref|YP_002890357.1| GTP-binding protein EngA [Thauera sp. MZ1T] gi|237625290|gb|ACR01980.1| small GTP-binding protein [Thauera sp. MZ1T] Length = 442 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 34/100 (34%), Positives = 59/100 (59%), Gaps = 5/100 (5%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G K+ I+G N GKS+L N L ++ I D+PGTTRD ++I + G + DTAG+R Sbjct: 176 GPKVAIVGRPNVGKSTLVNTLLGEERVIAFDMPGTTRDAISIPFERGGKRYTLIDTAGLR 235 Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + VEK + +T V+ ++++L+ +++ ++IS Sbjct: 236 RRGKVFEAVEKFSVIKTLQAVQECNVVVLV--LDAAQDIS 273 Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust. Identities = 37/94 (39%), Positives = 48/94 (51%), Gaps = 19/94 (20%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV-----LTIDLDLEGYLVKISDTAG 276 IV++G N GKS+LFN L + A+V D PG TRD D D YLV DTAG Sbjct: 5 IVLVGRPNVGKSTLFNRLTRTRDALVADQPGLTRDRHYGIGRVGDRD---YLV--VDTAG 59 Query: 277 IRETDDIVEKEGI-----KRTFLEVENADLILLL 305 D V K+GI ++ + AD++L L Sbjct: 60 F----DPVAKDGIMHEMARQAEQAIAEADVLLFL 89 >gi|122702767|emb|CAL88573.1| GTPase [Helicobacter pylori] gi|122702769|emb|CAL88574.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 4/102 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI 320 ++ KE + +DLIL + K I S ++I + I Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREI 110 >gi|122702379|emb|CAL88380.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 4/102 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI 320 ++ KE + +DLIL + K I S ++I + I Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREI 110 >gi|122702507|emb|CAL88444.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKSLNLKAAQMSDLIL 90 >gi|122702887|emb|CAL88633.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122701371|emb|CAL88075.1| GTPase [Helicobacter pylori] gi|122701395|emb|CAL88087.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ KE + +DLIL + Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYI 92 >gi|122701493|emb|CAL88136.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122701657|emb|CAL88218.1| GTPase [Helicobacter pylori] gi|242255818|gb|ACS88893.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122701455|emb|CAL88117.1| GTPase [Helicobacter pylori] gi|122702121|emb|CAL88251.1| GTPase [Helicobacter pylori] gi|292806598|gb|ADE42429.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122701683|emb|CAL88231.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122700793|emb|CAL87985.1| GTPase [Helicobacter pylori] gi|122700897|emb|CAL88037.1| GTPase [Helicobacter pylori] gi|122702145|emb|CAL88263.1| GTPase [Helicobacter pylori] gi|122702403|emb|CAL88392.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122700783|emb|CAL87980.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ KE + +DLIL + Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYI 92 >gi|122700679|emb|CAL87928.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122700731|emb|CAL87954.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALSGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|4467681|emb|CAB37792.1| GTP-binding protein homologue [Helicobacter pylori] gi|122702711|emb|CAL88545.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|4467647|emb|CAB37775.1| GTP-binding protein homologue [Helicobacter pylori] gi|4467649|emb|CAB37776.1| GTP-binding protein homologue [Helicobacter pylori] gi|99905845|gb|ABF68617.1| YphC [Helicobacter pylori] gi|99905847|gb|ABF68618.1| YphC [Helicobacter pylori] gi|122700649|emb|CAL87913.1| GTPase [Helicobacter pylori] gi|122700651|emb|CAL87914.1| GTPase [Helicobacter pylori] gi|122700693|emb|CAL87935.1| GTPase [Helicobacter pylori] gi|122701359|emb|CAL88069.1| GTPase [Helicobacter pylori] gi|122701367|emb|CAL88073.1| GTPase [Helicobacter pylori] gi|122701385|emb|CAL88082.1| GTPase [Helicobacter pylori] gi|122701489|emb|CAL88134.1| GTPase [Helicobacter pylori] gi|122701501|emb|CAL88140.1| GTPase [Helicobacter pylori] gi|122701513|emb|CAL88146.1| GTPase [Helicobacter pylori] gi|122701521|emb|CAL88150.1| GTPase [Helicobacter pylori] gi|122701529|emb|CAL88154.1| GTPase [Helicobacter pylori] gi|122701553|emb|CAL88166.1| GTPase [Helicobacter pylori] gi|122701569|emb|CAL88174.1| GTPase [Helicobacter pylori] gi|122701571|emb|CAL88175.1| GTPase [Helicobacter pylori] gi|122702219|emb|CAL88300.1| GTPase [Helicobacter pylori] gi|122702607|emb|CAL88493.1| GTPase [Helicobacter pylori] gi|122702631|emb|CAL88505.1| GTPase [Helicobacter pylori] gi|122702777|emb|CAL88578.1| GTPase [Helicobacter pylori] gi|242255852|gb|ACS88910.1| GTPase [Helicobacter pylori] gi|242255872|gb|ACS88920.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|4467679|emb|CAB37791.1| GTP-binding protein homologue [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKPAQMSDLIL 90 >gi|15611840|ref|NP_223491.1| GTP-binding protein EngA [Helicobacter pylori J99] gi|8134435|sp|Q9ZL09|DER_HELPJ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|4155327|gb|AAD06341.1| putative [Helicobacter pylori J99] Length = 462 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 11 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 70 ALLSKEIKALNLKAAQMSDLIL 91 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/106 (34%), Positives = 60/106 (56%), Gaps = 6/106 (5%) Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266 + + K EII+ G I+G N GKSSL NAL KK+ ++V+ + GTT D + + + Sbjct: 192 LEETKEEEIIQVG----IIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGD 247 Query: 267 YLVKISDTAGIRETDDI--VEKEGIKRTFLEVENADLILLLKEINS 310 + DTAGIR I +EK + RT +E + + LL+ ++++ Sbjct: 248 QKICFVDTAGIRHRGKILGIEKYALDRTQKALEKSHIALLVLDVSA 293 >gi|292670962|ref|ZP_06604388.1| GTP-binding protein EngA [Selenomonas noxia ATCC 43541] gi|292647583|gb|EFF65555.1| GTP-binding protein EngA [Selenomonas noxia ATCC 43541] Length = 428 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/96 (36%), Positives = 55/96 (57%), Gaps = 5/96 (5%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKSSL N L +D IV+D+PGTTRD + +G + DTAG+R Sbjct: 166 IAVVGRPNVGKSSLVNRLLGEDRVIVSDVPGTTRDAIDTHFTRDGVKYLLIDTAGMRRKG 225 Query: 282 DI---VEKEGIKRTFLEVENADLILLLKEINSKKEI 314 I VE+ + R+ ++ A ++L++ IN+ + I Sbjct: 226 KITLPVERYSVMRSLRAIDRAGVVLMV--INAAEGI 259 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 31/77 (40%), Positives = 47/77 (61%), Gaps = 3/77 (3%) Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--ETDDIVEKEG 288 GKS+LFN + KK ++IV D+PG TRD + +D + + + DT GI E+D I+ + Sbjct: 2 GKSTLFNQIGKKRISIVDDMPGVTRDRIYMDAEWLNHEFIMIDTGGIEFDESDHIL-RSM 60 Query: 289 IKRTFLEVENADLILLL 305 + L +E AD+IL L Sbjct: 61 RSQAELAIEEADVILFL 77 >gi|242255874|gb|ACS88921.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|212690606|ref|ZP_03298734.1| hypothetical protein BACDOR_00092 [Bacteroides dorei DSM 17855] gi|212666852|gb|EEB27424.1| hypothetical protein BACDOR_00092 [Bacteroides dorei DSM 17855] Length = 396 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 42/121 (34%), Positives = 64/121 (52%), Gaps = 8/121 (6%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276 N + + G N+GKSSL NAL +D A+V+DIPGTT D ++ ++++G DT G Sbjct: 10 NRLHVALFGRRNSGKSSLINALTGQDTALVSDIPGTTTDTVSKAMEIQGIGPCLFIDTPG 69 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF------PKNIDFIFIGTKSD 330 + ++ E I RT +E D+ LLL E + +E KNI I + K+D Sbjct: 70 FDDEGELGEMR-IIRTLKAIEQTDIALLLCEDEAHEEEKKWMKQLEEKNIPVILLLNKAD 128 Query: 331 L 331 + Sbjct: 129 I 129 >gi|122702195|emb|CAL88288.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702273|emb|CAL88327.1| GTPase [Helicobacter pylori] Length = 168 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 36/84 (42%), Positives = 50/84 (59%), Gaps = 1/84 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LAK+ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 8 IAILGQPNVGKSSLFNRLAKEKIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 66 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + KE + +DLIL + Sbjct: 67 AFLSKEIKAFNLKAAQMSDLILYV 90 >gi|122702279|emb|CAL88330.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 52/158 (32%), Positives = 78/158 (49%), Gaps = 18/158 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEIS-----FPKNIDFIFIGTKSD--- 330 ++ KE + +DLIL + K I S ++I F N + + K D Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128 Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362 +S++ IS G+ LI+ I S+L Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSVL 166 >gi|122700665|emb|CAL87921.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|99905855|gb|ABF68622.1| YphC [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|18075565|emb|CAD11178.1| GTP-binding protein [Helicobacter pylori] gi|122702807|emb|CAL88593.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|328949043|ref|YP_004366380.1| GTP-binding protein engA [Treponema succinifaciens DSM 2489] gi|328449367|gb|AEB15083.1| GTP-binding protein engA [Treponema succinifaciens DSM 2489] Length = 517 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 57/194 (29%), Positives = 88/194 (45%), Gaps = 27/194 (13%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I ILG N GKS+L NAL + +IV+D GTTRDV+ G+ ++I DTAGIR Sbjct: 243 RIAILGKPNVGKSTLSNALTHTESSIVSDYAGTTRDVVEGSFRYNGHDIQILDTAGIRRK 302 Query: 281 DDI---VEKEGIKRTFLEVENADLILL-------LKEINSK-KEISFPKNIDFIFIGTKS 329 + VE + R ++ D+ + L E + K ++F + +FI K Sbjct: 303 SKVKENVEYYSVNRAIKTLDECDIAFIMIDAVEGLAEQDKKITGLAFERGRGVVFILNKW 362 Query: 330 DLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH-------KRHLYH 382 DL E+ + T E ++ + ++ N +P S +H L Sbjct: 363 DLL----EDQGNKTVKKTKEWIQTMFGQM-----NWAPIIPLSAKNHDGIKNLMDTALEI 413 Query: 383 LSQTVRYLEMASLN 396 SQ R ++ ASLN Sbjct: 414 YSQLTRKVDTASLN 427 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 40/101 (39%), Positives = 52/101 (51%), Gaps = 9/101 (8%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 IVI G N GKS+LFNAL AI PG TRD + L G V + DT G + T Sbjct: 65 IVIAGRPNVGKSTLFNALTHTKRAITDPTPGVTRDPVEGTCFLSGLPVHLMDTGGYKLTR 124 Query: 282 DIVEKEG------IKRTFLEVENADLILLL---KEINSKKE 313 ++ +E +++T + AD ILLL EINS+ E Sbjct: 125 NLKSRESEMDDLVVEKTVSMFQKADKILLLLDATEINSEDE 165 >gi|317012645|gb|ADU83253.1| GTP-binding protein EngA [Helicobacter pylori Lithuania75] Length = 461 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 11 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 70 ALLSKEIKALNLKAAQMSDLIL 91 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/99 (36%), Positives = 59/99 (59%), Gaps = 6/99 (6%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273 EII+ G I+G N GKSSL NAL KK+ ++V+ + GTT D + + + + D Sbjct: 198 EIIQVG----IIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVD 253 Query: 274 TAGIRETDDI--VEKEGIKRTFLEVENADLILLLKEINS 310 TAGIR I +EK ++RT +E + ++LL+ ++++ Sbjct: 254 TAGIRHRGKILGIEKYALERTQKALEKSHIVLLVLDVSA 292 >gi|292806696|gb|ADE42478.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|242255816|gb|ACS88892.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|195954215|gb|ACG58813.1| YphC [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702691|emb|CAL88535.1| GTPase [Helicobacter pylori] gi|317453533|emb|CBL87876.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702865|emb|CAL88622.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 51/159 (32%), Positives = 78/159 (49%), Gaps = 18/159 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA+ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARGRIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEIS-----FPKNIDFIFIGTKSD--- 330 ++ KE + +DLIL + K I S +++ F N + + K D Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128 Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363 +S++ IS G+ LI+ I S+L+ Sbjct: 129 EKERSYAFSSFGMPKSFNISVSHNRGISALIDAILSVLN 167 >gi|122702543|emb|CAL88461.1| GTPase [Helicobacter pylori] gi|122702749|emb|CAL88564.1| GTPase [Helicobacter pylori] gi|122702757|emb|CAL88568.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702629|emb|CAL88504.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122701519|emb|CAL88149.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702213|emb|CAL88297.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122701481|emb|CAL88130.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 4/102 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI 320 ++ KE + +DLIL + K I S ++I + I Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREI 110 >gi|122701387|emb|CAL88083.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122700919|emb|CAL88048.1| GTPase [Helicobacter pylori] gi|122701631|emb|CAL88205.1| GTPase [Helicobacter pylori] gi|122702527|emb|CAL88453.1| GTPase [Helicobacter pylori] gi|292806412|gb|ADE42336.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122700631|emb|CAL87904.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKSLNLKAAQMSDLIL 90 >gi|122700599|emb|CAL87888.1| GTPase [Helicobacter pylori] gi|122700735|emb|CAL87956.1| GTPase [Helicobacter pylori] gi|122700809|emb|CAL87993.1| GTPase [Helicobacter pylori] gi|122700813|emb|CAL87995.1| GTPase [Helicobacter pylori] gi|122700819|emb|CAL87998.1| GTPase [Helicobacter pylori] gi|122701463|emb|CAL88121.1| GTPase [Helicobacter pylori] gi|122701483|emb|CAL88131.1| GTPase [Helicobacter pylori] gi|122701707|emb|CAL88243.1| GTPase [Helicobacter pylori] gi|122702183|emb|CAL88282.1| GTPase [Helicobacter pylori] gi|122702481|emb|CAL88431.1| GTPase [Helicobacter pylori] gi|122702509|emb|CAL88445.1| GTPase [Helicobacter pylori] gi|122702827|emb|CAL88603.1| GTPase [Helicobacter pylori] gi|195954209|gb|ACG58810.1| YphC [Helicobacter pylori] gi|195954211|gb|ACG58811.1| YphC [Helicobacter pylori] gi|292806464|gb|ADE42362.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806558|gb|ADE42409.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806568|gb|ADE42414.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806666|gb|ADE42463.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806686|gb|ADE42473.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|15645453|ref|NP_207627.1| GTP-binding protein EngA [Helicobacter pylori 26695] gi|3915379|sp|O25505|DER_HELPY RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|2313967|gb|AAD07883.1| GTP-binding protein homologue (yphC) [Helicobacter pylori 26695] Length = 458 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 11 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 70 ALLSKEIKALNLKAAQMSDLIL 91 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 36/99 (36%), Positives = 58/99 (58%), Gaps = 6/99 (6%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273 EII+ G I+G N GKSSL NAL KK+ ++V+ + GTT D + + + + D Sbjct: 195 EIIQVG----IIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVD 250 Query: 274 TAGIRETDDI--VEKEGIKRTFLEVENADLILLLKEINS 310 TAGIR I +EK ++RT +E + + LL+ ++++ Sbjct: 251 TAGIRHRGKILGIEKYALERTQKALEKSHIALLVLDVSA 289 >gi|326624338|gb|EGE30683.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 504 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 62/98 (63%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ + + DTAG+R+ Sbjct: 218 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRKR 277 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D VEK + +T +E+A+++LL+ I++++ IS Sbjct: 278 GKITDAVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 313 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG DT GI T+ Sbjct: 19 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGTE 78 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 D VE +++ L +E AD++L + Sbjct: 79 DGVETRMAEQSLLAIEEADVVLFM 102 >gi|317452813|emb|CBL87842.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|317182147|dbj|BAJ59931.1| GTP-binding protein EngA [Helicobacter pylori F57] Length = 461 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/84 (41%), Positives = 50/84 (59%), Gaps = 1/84 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA+ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 11 IAILGQPNVGKSSLFNRLARARIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ KE + +DLIL + Sbjct: 70 ALLSKEIKALNLKAAQMSDLILYI 93 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 55/92 (59%), Gaps = 2/92 (2%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSL NAL KK+ ++V+ + GTT D + + + + DTAGIR Sbjct: 201 QVGIIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILVGDQKICFVDTAGIRHR 260 Query: 281 DDI--VEKEGIKRTFLEVENADLILLLKEINS 310 I +EK ++RT +E + + LL+ ++++ Sbjct: 261 GKILGIEKYALERTQKALEKSHIALLVLDVSA 292 >gi|317009155|gb|ADU79735.1| GTP-binding protein EngA [Helicobacter pylori India7] Length = 462 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 11 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 70 ALLSKEIKALNLKAAQMSDLIL 91 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 54/192 (28%), Positives = 93/192 (48%), Gaps = 29/192 (15%) Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266 + + K EII+ G I+G N GKSSL NAL KK+ ++V+ + GTT D + + + Sbjct: 192 LEETKEEEIIQVG----IIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGD 247 Query: 267 YLVKISDTAGIRETDDI--VEKEGIKRTFLEVENADLILLLKEINSK--------KEISF 316 + DTAGIR I +EK ++RT +E + + LL+ ++++ ++ Sbjct: 248 QKICFVDTAGIRHRGKILGIEKYALERTQKALEKSHIALLVLDVSAPFVELDEKISSLAD 307 Query: 317 PKNIDFIFIGTKSDL-YSTYTE------------EYDHLI--SSFTGEGLEELINKIKSI 361 ++ I I K D+ Y+ Y E EY +I S ++E+ +KI + Sbjct: 308 KHSLGIILILNKWDIRYAPYEEIMATLKRKFRFLEYAPVITTSCLKARHIDEIKHKIIEV 367 Query: 362 LSNKFKKLPFSI 373 K++P S+ Sbjct: 368 YECFSKRIPTSL 379 >gi|292806672|gb|ADE42466.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|292806654|gb|ADE42457.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806694|gb|ADE42477.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|242255814|gb|ACS88891.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702625|emb|CAL88502.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702537|emb|CAL88458.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALSGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702561|emb|CAL88470.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALSGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702557|emb|CAL88468.1| GTPase [Helicobacter pylori] gi|122702575|emb|CAL88477.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702835|emb|CAL88607.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702563|emb|CAL88471.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702791|emb|CAL88585.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122701639|emb|CAL88209.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNHLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122701491|emb|CAL88135.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702151|emb|CAL88266.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122701433|emb|CAL88106.1| GTPase [Helicobacter pylori] gi|292806486|gb|ADE42373.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 4/102 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI 320 ++ KE + +DLIL + K I S ++I + I Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREI 110 >gi|122700841|emb|CAL88009.1| GTPase [Helicobacter pylori] gi|122701461|emb|CAL88120.1| GTPase [Helicobacter pylori] gi|122702239|emb|CAL88310.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122700739|emb|CAL87958.1| GTPase [Helicobacter pylori] gi|122702841|emb|CAL88610.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122700899|emb|CAL88038.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122700643|emb|CAL87910.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122700667|emb|CAL87922.1| GTPase [Helicobacter pylori] gi|122700867|emb|CAL88022.1| GTPase [Helicobacter pylori] gi|122701573|emb|CAL88176.1| GTPase [Helicobacter pylori] gi|122702389|emb|CAL88385.1| GTPase [Helicobacter pylori] gi|122702437|emb|CAL88409.1| GTPase [Helicobacter pylori] gi|122702443|emb|CAL88412.1| GTPase [Helicobacter pylori] gi|122702465|emb|CAL88423.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|330969066|gb|EGH69132.1| GTP-binding protein Der [Pseudomonas syringae pv. aceris str. M302273PT] Length = 490 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 48/185 (25%), Positives = 84/185 (45%), Gaps = 31/185 (16%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 ++G KI I+G N GKS+L N + +D IV D PGTTRD + I + + DTAG Sbjct: 193 KDGIKIAIIGRPNVGKSTLVNRMLGEDRVIVYDEPGTTRDSIYIPFERNEEKYTLIDTAG 252 Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLLKEIN------------------------ 309 +R+ I VEK + +T +++A++++ + + Sbjct: 253 VRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDAREGVVDHDLNLLGFALEAGRALVIA 312 Query: 310 -SKKEISFPKNIDFIFIGTKSDLYSTYTEEYD-HLISSFTGEGLEELINKIKSILSNKFK 367 +K + P DF+ I + L+ + + D H IS+ G G+ L +++ + Sbjct: 313 LNKWDGMTPGERDFVKIELERRLF--FVDFADIHFISAMHGTGVGNLYQSVQNSFKSAVT 370 Query: 368 KLPFS 372 + P S Sbjct: 371 RWPTS 375 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS++FN L + AIV D+ G TRD + +G + DT GI + Sbjct: 5 IALVGRPNVGKSTMFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYILIDTGGISGDE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++++ +++ L +E AD++L L Sbjct: 65 HGMDEKMAEQSLLAIEEADVVLFL 88 >gi|308063376|gb|ADO05263.1| GTP-binding protein EngA [Helicobacter pylori Sat464] Length = 460 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 11 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 70 ALLSKEIKALNLKAAQMSDLIL 91 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 61/231 (26%), Positives = 104/231 (45%), Gaps = 47/231 (20%) Query: 168 IRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227 + IE DLD E ++N + KE + E+I+ G I+G Sbjct: 169 LNQIIEQDLDADILESLENNAPKEETKE------------------EVIQVG----IIGR 206 Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI--VE 285 N GKSSL NAL KK+ ++V+ + GTT D + + + + DTAGIR I +E Sbjct: 207 VNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVDTAGIRHRGKILGIE 266 Query: 286 KEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDL-YSTYT 336 K ++RT +E + + LL+ ++++ ++ ++ I I K D+ Y+ Y Sbjct: 267 KYALERTQKALEKSHIALLVLDVSAPFVELDEKISSLADKHSLGIILILNKWDIRYAPYE 326 Query: 337 E------------EYDHLI--SSFTGEGLEELINKIKSILSNKFKKLPFSI 373 E EY +I S ++E+ +KI + K++P S+ Sbjct: 327 EIMATLKRKFRFLEYAPIITTSCLKAHHIDEIKHKIIEVYECFSKRIPTSL 377 >gi|297380037|gb|ADI34924.1| GTP-binding protein EngA [Helicobacter pylori v225d] Length = 461 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 11 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 70 ALLSKEIKALNLKAAQMSDLIL 91 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 49/178 (27%), Positives = 88/178 (49%), Gaps = 25/178 (14%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSL NAL KK+ ++V+ + GTT D + + + + DTAGIR Sbjct: 201 QVGIIGRVNVGKSSLLNALTKKERSLVSSMAGTTIDPIDETILIGDQKICFVDTAGIRHR 260 Query: 281 DDI--VEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330 I +EK ++RT +E + ++LL+ ++++ ++ ++ I I K D Sbjct: 261 GKILGIEKYALERTQKALEKSHIVLLVLDVSAPFVELDEKISSLADKHSLGIILILNKWD 320 Query: 331 L-YSTYTE------------EYDHLI--SSFTGEGLEELINKIKSILSNKFKKLPFSI 373 + Y+ Y E EY +I S ++E+ +KI + K++P S+ Sbjct: 321 IRYAPYEEIMATLKRKFRFLEYAPVITTSCLKARHIDEIKHKIIEVYECFSKRIPTSL 378 >gi|292806670|gb|ADE42465.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|292806466|gb|ADE42363.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|242255878|gb|ACS88923.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|237725197|ref|ZP_04555678.1| conserved hypothetical protein [Bacteroides sp. D4] gi|229436463|gb|EEO46540.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4] Length = 396 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 42/121 (34%), Positives = 64/121 (52%), Gaps = 8/121 (6%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276 N + + G N+GKSSL NAL +D A+V+DIPGTT D ++ ++++G DT G Sbjct: 10 NRLHVALFGRRNSGKSSLINALTGQDTALVSDIPGTTTDTVSKAMEIQGIGPCLFIDTPG 69 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF------PKNIDFIFIGTKSD 330 + ++ E I RT +E D+ LLL E + +E KNI I + K+D Sbjct: 70 FDDEGELGEMR-IIRTLKAIEQTDIALLLCEDEAHEEEKKWMKQLEEKNIPVILLLNKAD 128 Query: 331 L 331 + Sbjct: 129 I 129 >gi|227499570|ref|ZP_03929677.1| GTPase [Anaerococcus tetradius ATCC 35098] gi|227218329|gb|EEI83583.1| GTPase [Anaerococcus tetradius ATCC 35098] Length = 437 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 40/99 (40%), Positives = 55/99 (55%), Gaps = 3/99 (3%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273 E I + +I I+G NAGKSSL N L ++ IVTDI GTTRD + G + D Sbjct: 170 EKIEDETRIAIIGKPNAGKSSLVNLLLNEERMIVTDIAGTTRDAVDSYWTYNGNNYVLID 229 Query: 274 TAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEIN 309 TAG+R + VE +RTF V++A++ L L + N Sbjct: 230 TAGLRRKSKVKESVEYYANQRTFDAVDSAEICLFLIDAN 268 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 76/165 (46%), Gaps = 30/165 (18%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI---- 277 + ++G +N GKS+LFN L K +I DI G TRD + ++ + + DT G+ Sbjct: 6 VTLVGRTNVGKSTLFNRLVGKRKSITEDISGVTRDRIVDKVEWQNKEFLLVDTGGLDISN 65 Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF-----------IFIG 326 +E + K +++ LE DL+L + + +E P ++D I + Sbjct: 66 KEIMNAEVKSQVEKALLE---TDLVLFVVD---GREGPNPHDVDIANEVRKYNKPVIIVA 119 Query: 327 TKSDLYSTYTEEYDH---------LISSFTGEGLEELINKIKSIL 362 K D + E YD +IS+ +GL +L++KI S + Sbjct: 120 NKIDSFKMPDEIYDFYQFGFDDLLMISAEQSKGLGDLLDKIVSYI 164 >gi|161502327|ref|YP_001569439.1| GTP-binding protein EngA [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160863674|gb|ABX20297.1| hypothetical protein SARI_00360 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 504 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 62/98 (63%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ + + DTAG+R+ Sbjct: 218 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRKR 277 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D VEK + +T +E+A+++LL+ I++++ IS Sbjct: 278 GKITDAVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 313 Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG DT GI T+ Sbjct: 19 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGTE 78 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 D VE +++ L +E AD++L + Sbjct: 79 DGVETRMAEQSLLAIEEADVVLFM 102 >gi|122702843|emb|CAL88611.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702373|emb|CAL88377.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702345|emb|CAL88363.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 4/102 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI 320 ++ KE + +DLIL + K I S ++I + I Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREI 110 >gi|122701477|emb|CAL88128.1| GTPase [Helicobacter pylori] gi|122702565|emb|CAL88472.1| GTPase [Helicobacter pylori] gi|122702569|emb|CAL88474.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702215|emb|CAL88298.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122701627|emb|CAL88203.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122701435|emb|CAL88107.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122701711|emb|CAL88245.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 4/102 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI 320 ++ KE + +DLIL + K I S ++I + I Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREI 110 >gi|122701397|emb|CAL88088.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702153|emb|CAL88267.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122700619|emb|CAL87898.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|18075573|emb|CAD11182.1| GTP-binding protein [Helicobacter pylori] gi|122702805|emb|CAL88592.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 TLLSKEIKALNLKAAQMSDLIL 90 >gi|330975909|gb|EGH75975.1| GTP-binding protein Der [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 490 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 48/185 (25%), Positives = 84/185 (45%), Gaps = 31/185 (16%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 ++G KI I+G N GKS+L N + +D IV D PGTTRD + I + + DTAG Sbjct: 193 KDGIKIAIIGRPNVGKSTLVNRMLGEDRVIVYDEPGTTRDSIYIPFERNEEKYTLIDTAG 252 Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLLKEIN------------------------ 309 +R+ I VEK + +T +++A++++ + + Sbjct: 253 VRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDAREGVVDHDLNLLGFALEAGRALVIA 312 Query: 310 -SKKEISFPKNIDFIFIGTKSDLYSTYTEEYD-HLISSFTGEGLEELINKIKSILSNKFK 367 +K + P DF+ I + L+ + + D H IS+ G G+ L +++ + Sbjct: 313 LNKWDGMTPGERDFVKIELERRLF--FVDFADIHFISALHGTGVGNLYQSVQNSFKSAVT 370 Query: 368 KLPFS 372 + P S Sbjct: 371 RWPTS 375 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS++FN L + AIV D+ G TRD + +G + DT GI + Sbjct: 5 IALVGRPNVGKSTMFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYILIDTGGISGDE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++++ +++ L +E AD++L L Sbjct: 65 HGMDEKMAEQSLLAIEEADVVLFL 88 >gi|304387839|ref|ZP_07370013.1| ribosome-associated GTPase EngA [Neisseria meningitidis ATCC 13091] gi|304338104|gb|EFM04240.1| ribosome-associated GTPase EngA [Neisseria meningitidis ATCC 13091] Length = 536 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 34/96 (35%), Positives = 59/96 (61%), Gaps = 5/96 (5%) Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---E 279 ++G N GKS+L NA+ ++ I D+ GTTRD + ID + EG I DTAG+R + Sbjct: 230 AVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSIHIDFEREGKPFTIIDTAGVRRRGK 289 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D+ VEK + + VE A++ +L+ ++++++I+ Sbjct: 290 VDEAVEKFSVIKAMQAVEAANVAVLV--LDAQQDIA 323 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280 I ++G N GKS+LFN L + A+V D+PG TRD + + DT G Sbjct: 56 IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGFEPVV 115 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 D + E K+T V+ AD ++ L Sbjct: 116 DSGILHEMAKQTLQAVDEADAVVFL 140 >gi|122702485|emb|CAL88433.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702193|emb|CAL88287.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122700883|emb|CAL88030.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122700845|emb|CAL88011.1| GTPase [Helicobacter pylori] gi|122700855|emb|CAL88016.1| GTPase [Helicobacter pylori] gi|122702531|emb|CAL88455.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122700789|emb|CAL87983.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|71065252|ref|YP_263979.1| GTP-binding protein EngA [Psychrobacter arcticus 273-4] gi|123649239|sp|Q4FTW3|DER_PSYA2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|71038237|gb|AAZ18545.1| putative GTP-binding protein, HSR1-related [Psychrobacter arcticus 273-4] Length = 473 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 33/90 (36%), Positives = 55/90 (61%), Gaps = 3/90 (3%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G K+ I+G N GKS+L N L +D +V D+PGTTRD + I +G + DTAG+R Sbjct: 177 GLKLAIIGRPNVGKSTLVNRLLGEDRVVVFDMPGTTRDSIYIPYKRDGKDYVLIDTAGVR 236 Query: 279 ---ETDDIVEKEGIKRTFLEVENADLILLL 305 + D+ VEK + +T +E++++ +++ Sbjct: 237 RRGKIDEKVEKFSVIKTLQAIEDSNVTVIV 266 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 3/87 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN K A+V D+ G TRD D E + DT GI E D Sbjct: 7 VALIGRPNVGKSTLFNQFTKSRQALVADLSGLTRDRQYGDATYEDKAFIVVDTGGIGEAD 66 Query: 282 D---IVEKEGIKRTFLEVENADLILLL 305 D ++ ++++ + AD+I+ + Sbjct: 67 DGRGDIDDYMSEQSYTAIHEADIIVFV 93 >gi|325135934|gb|EGC58544.1| GTP-binding protein [Neisseria meningitidis M0579] Length = 536 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 34/96 (35%), Positives = 59/96 (61%), Gaps = 5/96 (5%) Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---E 279 ++G N GKS+L NA+ ++ I D+ GTTRD + ID + EG I DTAG+R + Sbjct: 230 AVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSIHIDFEREGKPFTIIDTAGVRRRGK 289 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D+ VEK + + VE A++ +L+ ++++++I+ Sbjct: 290 VDEAVEKFSVIKAMQAVEAANVAVLV--LDAQQDIA 323 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280 I ++G N GKS+LFN L + A+V D+PG TRD + + DT G Sbjct: 56 IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGFEPVV 115 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 D + E K+T V+ AD ++ L Sbjct: 116 DSGILHEMAKQTLQAVDEADAVVFL 140 >gi|317453511|emb|CBL87865.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|317452847|emb|CBL87859.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|309775502|ref|ZP_07670502.1| ribosome-associated GTPase EngA [Erysipelotrichaceae bacterium 3_1_53] gi|308916596|gb|EFP62336.1| ribosome-associated GTPase EngA [Erysipelotrichaceae bacterium 3_1_53] Length = 263 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K ++G N GKSSL NA+ ++ IV++I GTTRD + EG + DTAGIR+ Sbjct: 3 KFCVIGRPNVGKSSLVNAVLNQERVIVSNIEGTTRDAIDTPFKREGKEYVVIDTAGIRKR 62 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +EK + R +E +D++L++ Sbjct: 63 GKVYESIEKYSVLRAMSAIERSDVVLVV 90 >gi|302185741|ref|ZP_07262414.1| GTP-binding protein EngA [Pseudomonas syringae pv. syringae 642] gi|330950783|gb|EGH51043.1| GTP-binding protein Der [Pseudomonas syringae Cit 7] Length = 490 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 48/185 (25%), Positives = 84/185 (45%), Gaps = 31/185 (16%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 ++G KI I+G N GKS+L N + +D IV D PGTTRD + I + + DTAG Sbjct: 193 KDGIKIAIIGRPNVGKSTLVNRMLGEDRVIVYDEPGTTRDSIYIPFERNEEKYTLIDTAG 252 Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLLKEIN------------------------ 309 +R+ I VEK + +T +++A++++ + + Sbjct: 253 VRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDAREGVVDHDLNLLGFALEAGRALVIA 312 Query: 310 -SKKEISFPKNIDFIFIGTKSDLYSTYTEEYD-HLISSFTGEGLEELINKIKSILSNKFK 367 +K + P DF+ I + L+ + + D H IS+ G G+ L +++ + Sbjct: 313 LNKWDGMTPGERDFVKIELERRLF--FVDFADIHFISALHGTGVGNLYQSVQNSFKSAVT 370 Query: 368 KLPFS 372 + P S Sbjct: 371 RWPTS 375 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS++FN L + AIV D+ G TRD + +G + DT GI + Sbjct: 5 IALVGRPNVGKSTMFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYILIDTGGISGDE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++++ +++ L +E AD++L L Sbjct: 65 HGMDEKMAEQSLLAIEEADVVLFL 88 >gi|292806592|gb|ADE42426.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|292806590|gb|ADE42425.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|292806438|gb|ADE42349.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 4/102 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI 320 ++ KE + +DLIL + K I S ++I + I Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREI 110 >gi|254670450|emb|CBA06089.1| putative GTP-binding protein [Neisseria meningitidis alpha153] Length = 536 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 34/96 (35%), Positives = 59/96 (61%), Gaps = 5/96 (5%) Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---E 279 ++G N GKS+L NA+ ++ I D+ GTTRD + ID + EG I DTAG+R + Sbjct: 230 AVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSIHIDFEREGKPFTIIDTAGVRRRGK 289 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D+ VEK + + VE A++ +L+ ++++++I+ Sbjct: 290 VDEAVEKFSVIKAMQAVEAANVAVLV--LDAQQDIA 323 Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280 I ++G N GKS+LFN L + A+V D+PG TRD + + DT G Sbjct: 56 IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGFEPVV 115 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 D + E K+T V+ AD ++ L Sbjct: 116 DSGILHEMAKQTLQAVDEADAVVFL 140 >gi|242255894|gb|ACS88931.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122701333|emb|CAL88056.1| GTPase [Helicobacter pylori] gi|122702713|emb|CAL88546.1| GTPase [Helicobacter pylori] gi|292806502|gb|ADE42381.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122701389|emb|CAL88084.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122701709|emb|CAL88244.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122701543|emb|CAL88161.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122700891|emb|CAL88034.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKATQMSDLIL 90 >gi|122700797|emb|CAL87987.1| GTPase [Helicobacter pylori] gi|122700865|emb|CAL88021.1| GTPase [Helicobacter pylori] gi|122701331|emb|CAL88055.1| GTPase [Helicobacter pylori] gi|122702441|emb|CAL88411.1| GTPase [Helicobacter pylori] gi|122702529|emb|CAL88454.1| GTPase [Helicobacter pylori] gi|292806614|gb|ADE42437.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122700885|emb|CAL88031.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 4/102 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI 320 ++ KE + +DLIL + K I S ++I + I Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREI 110 >gi|122700647|emb|CAL87912.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|99905873|gb|ABF68631.1| YphC [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|18075575|emb|CAD11183.1| GTP-binding protein [Helicobacter pylori] gi|122702579|emb|CAL88479.1| GTPase [Helicobacter pylori] gi|122702809|emb|CAL88594.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|325144121|gb|EGC66428.1| GTP-binding protein [Neisseria meningitidis M01-240013] Length = 536 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 34/96 (35%), Positives = 59/96 (61%), Gaps = 5/96 (5%) Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---E 279 ++G N GKS+L NA+ ++ I D+ GTTRD + ID + EG I DTAG+R + Sbjct: 230 AVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSIHIDFEREGKPFTIIDTAGVRRRGK 289 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D+ VEK + + VE A++ +L+ ++++++I+ Sbjct: 290 VDEAVEKFSVIKAMQAVEAANVAVLV--LDAQQDIA 323 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280 I ++G N GKS+LFN L + A+V D+PG TRD + + DT G Sbjct: 56 IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGFEPVV 115 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 D + E K+T V+ AD ++ L Sbjct: 116 DSGILHEMAKQTLQAVDEADAVVFL 140 >gi|292806414|gb|ADE42337.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806504|gb|ADE42382.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|242255902|gb|ACS88935.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702593|emb|CAL88486.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702701|emb|CAL88540.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ KE + +DLIL + Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYI 92 >gi|122702501|emb|CAL88441.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702761|emb|CAL88570.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702613|emb|CAL88496.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702227|emb|CAL88304.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702217|emb|CAL88299.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702173|emb|CAL88277.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMTK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702221|emb|CAL88301.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122700769|emb|CAL87973.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|4467659|emb|CAB37781.1| GTP-binding protein homologue [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|66044500|ref|YP_234341.1| GTP-binding protein EngA [Pseudomonas syringae pv. syringae B728a] gi|81308464|sp|Q4ZX19|DER_PSEU2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|63255207|gb|AAY36303.1| Small GTP-binding protein domain:GTP-binding [Pseudomonas syringae pv. syringae B728a] Length = 490 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 48/185 (25%), Positives = 84/185 (45%), Gaps = 31/185 (16%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 ++G KI I+G N GKS+L N + +D IV D PGTTRD + I + + DTAG Sbjct: 193 KDGIKIAIIGRPNVGKSTLVNRMLGEDRVIVYDEPGTTRDSIYIPFERNEEKYTLIDTAG 252 Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLLKEIN------------------------ 309 +R+ I VEK + +T +++A++++ + + Sbjct: 253 VRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDAREGVVDHDLNLLGFALEAGRALVIA 312 Query: 310 -SKKEISFPKNIDFIFIGTKSDLYSTYTEEYD-HLISSFTGEGLEELINKIKSILSNKFK 367 +K + P DF+ I + L+ + + D H IS+ G G+ L +++ + Sbjct: 313 LNKWDGMTPGERDFVKIELERRLF--FVDFADIHFISAMHGTGVGNLYQSVQNSFKSAVT 370 Query: 368 KLPFS 372 + P S Sbjct: 371 RWPTS 375 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS++FN L + AIV D+ G TRD + +G + DT GI + Sbjct: 5 IALVGRPNVGKSTMFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYILIDTGGISGDE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++++ +++ L +E AD++L L Sbjct: 65 HGMDEKMAEQSLLAIEEADVVLFL 88 >gi|317453535|emb|CBL87877.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|317452845|emb|CBL87858.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|317452831|emb|CBL87851.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|292806700|gb|ADE42480.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 4/102 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI 320 ++ KE + +DLIL + K I S ++I + I Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREI 110 >gi|292806644|gb|ADE42452.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|292806636|gb|ADE42448.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|292806534|gb|ADE42397.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|292806440|gb|ADE42350.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|242255876|gb|ACS88922.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|224535783|ref|ZP_03676322.1| hypothetical protein BACCELL_00647 [Bacteroides cellulosilyticus DSM 14838] gi|224522603|gb|EEF91708.1| hypothetical protein BACCELL_00647 [Bacteroides cellulosilyticus DSM 14838] Length = 437 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 53/88 (60%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G NAGKSS+ NA +D IVT+I GTTRD + + G+ + DTAGIR+ Sbjct: 177 RFAVVGRPNAGKSSIVNAFIGEDRNIVTEIAGTTRDSIYTRYNKFGFDFYLVDTAGIRKK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + + +E + R+ +ENAD+ +L+ Sbjct: 237 NKVNEDLEYYSVIRSIRSIENADVCILM 264 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 35/91 (38%), Positives = 51/91 (56%), Gaps = 1/91 (1%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277 G + I+G N GKS+LFN L K AIV + GTTRD + G + DT G + Sbjct: 2 GNLVAIVGRPNVGKSTLFNRLTKTRQAIVNEEAGTTRDRQYGKSEWLGKEFSVVDTGGWV 61 Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEI 308 +DDI E+E K+ + V+ AD+IL + ++ Sbjct: 62 VNSDDIFEEEIRKQVLMAVDEADVILFVVDV 92 >gi|210135034|ref|YP_002301473.1| GTP-binding protein EngA [Helicobacter pylori P12] gi|238058975|sp|B6JM65|DER_HELP2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|210133002|gb|ACJ07993.1| GTP-binding protein-like protein [Helicobacter pylori P12] Length = 462 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 11 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 70 ALLSKEIKALNLKAAQMSDLIL 91 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 53/185 (28%), Positives = 90/185 (48%), Gaps = 29/185 (15%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273 EII+ G I+G N GKSSL NAL KK+ ++V+ + GTT D + + + + D Sbjct: 199 EIIQVG----IIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVD 254 Query: 274 TAGIRETDDI--VEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFI 323 TAGIR I +EK ++RT +E + + LL+ ++++ ++ ++ I Sbjct: 255 TAGIRHRGKILGIEKYALERTQKALEKSHIALLVLDVSTPFVELDEKISSLADKHSLGII 314 Query: 324 FIGTKSDL-YSTYTE------------EYDHLI--SSFTGEGLEELINKIKSILSNKFKK 368 I K D+ Y+ Y E EY +I S ++E+ +KI + K+ Sbjct: 315 LILNKWDIRYAPYEEIMATLKRKFRFLEYAPVITTSCLKARHIDEIKHKIIEVYECFSKR 374 Query: 369 LPFSI 373 +P S+ Sbjct: 375 IPTSL 379 >gi|122702623|emb|CAL88501.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702833|emb|CAL88606.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702433|emb|CAL88407.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122701327|emb|CAL88053.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 4/102 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI 320 ++ KE + +DLIL + K I S ++I + I Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREI 110 >gi|122702267|emb|CAL88324.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122701703|emb|CAL88241.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122701403|emb|CAL88091.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ KE + +DLIL + Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYI 92 >gi|99905849|gb|ABF68619.1| YphC [Helicobacter pylori] gi|115605761|gb|ABJ15862.1| YphC [Helicobacter pylori] gi|122700601|emb|CAL87889.1| GTPase [Helicobacter pylori] gi|122700603|emb|CAL87890.1| GTPase [Helicobacter pylori] gi|122700611|emb|CAL87894.1| GTPase [Helicobacter pylori] gi|122700613|emb|CAL87895.1| GTPase [Helicobacter pylori] gi|122700617|emb|CAL87897.1| GTPase [Helicobacter pylori] gi|122702639|emb|CAL88509.1| GTPase [Helicobacter pylori] gi|122702857|emb|CAL88618.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ KE + +DLIL + Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYV 92 >gi|317453525|emb|CBL87872.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|317452819|emb|CBL87845.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|292806564|gb|ADE42412.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|289626149|ref|ZP_06459103.1| GTP-binding protein EngA [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649055|ref|ZP_06480398.1| GTP-binding protein EngA [Pseudomonas syringae pv. aesculi str. 2250] gi|298486027|ref|ZP_07004101.1| GTP-binding protein EngA [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159504|gb|EFI00551.1| GTP-binding protein EngA [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330869573|gb|EGH04282.1| GTP-binding protein Der [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 490 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 48/185 (25%), Positives = 84/185 (45%), Gaps = 31/185 (16%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 ++G KI I+G N GKS+L N + +D IV D PGTTRD + I + + DTAG Sbjct: 193 KDGIKIAIIGRPNVGKSTLVNRMLGEDRVIVYDEPGTTRDSIYIPFERNEEKYTLIDTAG 252 Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLLKEIN------------------------ 309 +R+ I VEK + +T +++A++++ + + Sbjct: 253 VRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDAREGVVDHDLNLLGFALEAGRALVIA 312 Query: 310 -SKKEISFPKNIDFIFIGTKSDLYSTYTEEYD-HLISSFTGEGLEELINKIKSILSNKFK 367 +K + P DF+ I + L+ + + D H IS+ G G+ L +++ + Sbjct: 313 LNKWDGMTPGERDFVKIELERRLF--FVDFADIHFISALHGTGVGNLYQSVQNSFKSAVT 370 Query: 368 KLPFS 372 + P S Sbjct: 371 RWPTS 375 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS++FN L + AIV D+ G TRD + +G + DT GI + Sbjct: 5 IALVGRPNVGKSTMFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYILIDTGGISGDE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++++ +++ L +E AD++L L Sbjct: 65 HGMDEKMAEQSLLAIEEADVVLFL 88 >gi|210612261|ref|ZP_03289209.1| hypothetical protein CLONEX_01409 [Clostridium nexile DSM 1787] gi|210151635|gb|EEA82642.1| hypothetical protein CLONEX_01409 [Clostridium nexile DSM 1787] Length = 442 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I I+G N GKSS+ N L ++ IV+D+ GTTRD + + G DTAG+R Sbjct: 179 RIAIVGKPNVGKSSIVNKLLGENRVIVSDVAGTTRDAIDTAIKYHGKEYVFIDTAGLRRK 238 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + I +E+ I RT VE AD++L++ Sbjct: 239 NKIKEELERYSIIRTVTAVERADVVLMV 266 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 53/90 (58%), Gaps = 1/90 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFNALA + ++IV D PG TRD + ++ + DT GI ++ Sbjct: 6 VAIVGRPNVGKSTLFNALAGEMISIVKDTPGVTRDRIYAEVTWLDKEFTMIDTGGIEPDS 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310 DI+ + ++ + ++ AD+I+ + ++ Sbjct: 66 KDIILSQMREQAQIAIDTADVIVFITDVRQ 95 >gi|161869787|ref|YP_001598955.1| GTP-binding protein EngA [Neisseria meningitidis 053442] gi|161595340|gb|ABX73000.1| GTP-binding protein engA [Neisseria meningitidis 053442] Length = 536 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 34/96 (35%), Positives = 59/96 (61%), Gaps = 5/96 (5%) Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---E 279 ++G N GKS+L NA+ ++ I D+ GTTRD + ID + EG I DTAG+R + Sbjct: 230 AVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSIHIDFEREGKPFTIIDTAGVRRRGK 289 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D+ VEK + + VE A++ +L+ ++++++I+ Sbjct: 290 VDEAVEKFSVIKAMQAVEAANVAVLV--LDAQQDIA 323 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280 I ++G N GKS+LFN L + A+V D+PG TRD + + DT G Sbjct: 56 IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGFEPVV 115 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 D + E K+T V+ AD ++ L Sbjct: 116 DSGILHEMAKQTLQAVDEADAVVFL 140 >gi|122702139|emb|CAL88260.1| GTPase [Helicobacter pylori] gi|317452841|emb|CBL87856.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122701693|emb|CAL88236.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702143|emb|CAL88262.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122701377|emb|CAL88078.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702263|emb|CAL88322.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122700605|emb|CAL87891.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|99905875|gb|ABF68632.1| YphC [Helicobacter pylori] gi|122701423|emb|CAL88101.1| GTPase [Helicobacter pylori] gi|122701475|emb|CAL88127.1| GTPase [Helicobacter pylori] gi|122702479|emb|CAL88430.1| GTPase [Helicobacter pylori] gi|122702505|emb|CAL88443.1| GTPase [Helicobacter pylori] gi|122702697|emb|CAL88538.1| GTPase [Helicobacter pylori] gi|122702753|emb|CAL88566.1| GTPase [Helicobacter pylori] gi|292806470|gb|ADE42365.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806532|gb|ADE42396.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806612|gb|ADE42436.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806652|gb|ADE42456.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806678|gb|ADE42469.1| GTP-binding protein-like protein [Helicobacter pylori] gi|317453519|emb|CBL87869.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|93004278|gb|ABE97059.1| YphC [Helicobacter pylori] gi|99905861|gb|ABF68625.1| YphC [Helicobacter pylori] gi|122702715|emb|CAL88547.1| GTPase [Helicobacter pylori] gi|242255892|gb|ACS88930.1| GTPase [Helicobacter pylori] gi|242255896|gb|ACS88932.1| GTPase [Helicobacter pylori] gi|242255934|gb|ACS88951.1| GTPase [Helicobacter pylori] gi|317453531|emb|CBL87875.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|18075553|emb|CAD11172.1| GTP-binding protein [Helicobacter pylori] gi|122700621|emb|CAL87899.1| GTPase [Helicobacter pylori] gi|122702467|emb|CAL88424.1| GTPase [Helicobacter pylori] gi|122702741|emb|CAL88560.1| GTPase [Helicobacter pylori] gi|122702823|emb|CAL88601.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|15837067|ref|NP_297755.1| GTP-binding protein EngA [Xylella fastidiosa 9a5c] gi|26006743|sp|Q9PG37|DER_XYLFA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|9105311|gb|AAF83275.1|AE003896_12 GTP-binding protein [Xylella fastidiosa 9a5c] Length = 465 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 33/87 (37%), Positives = 53/87 (60%), Gaps = 3/87 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--- 278 I +G N GKS+L N L ++ IV+D+PGTTRD +T+DL+ + ++ DTAG+R Sbjct: 181 IAFVGRPNVGKSTLVNRLLGEERMIVSDVPGTTRDSITVDLERDECRYRLVDTAGLRRKS 240 Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL 305 + ++ VEK +T +E + +LL Sbjct: 241 KVEEAVEKFSAFKTLQVIEQCQVAVLL 267 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 42/164 (25%), Positives = 74/164 (45%), Gaps = 22/164 (13%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280 + ++G N GKS+LFNAL A+V D PG TRD ++G L + DT G+ Sbjct: 5 VALVGRPNVGKSTLFNALTLTRDALVHDQPGVTRDRHYGVCRIDGQPLFAVVDTGGMVGK 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK------------KEISFPKNIDFIFIGTK 328 +D + ++ L AD++L + + +++S P + I Sbjct: 65 EDGLAGATARQARLAAAEADVVLFVVNVREGVSALDDDILAWLRKLSQPTLLVINKIDGV 124 Query: 329 SDLYSTYTEEYDHL-------ISSFTGEGLEELINKIKSILSNK 365 SD +T E+ H +S+ +GL++LI ++ + L + Sbjct: 125 SD--ATVHSEFAHYGFSDVVPVSAAHRQGLDDLIEQVLAWLPER 166 >gi|330957531|gb|EGH57791.1| GTP-binding protein Der [Pseudomonas syringae pv. maculicola str. ES4326] Length = 489 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 48/185 (25%), Positives = 84/185 (45%), Gaps = 31/185 (16%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 ++G KI I+G N GKS+L N + +D IV D PGTTRD + I + + DTAG Sbjct: 192 KDGIKIAIIGRPNVGKSTLVNRMLGEDRVIVYDEPGTTRDSIYIPFERNEEKYTLIDTAG 251 Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLLKEIN------------------------ 309 +R+ I VEK + +T +++A++++ + + Sbjct: 252 VRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDAREGVVDHDLNLLGFALEAGRALVIA 311 Query: 310 -SKKEISFPKNIDFIFIGTKSDLYSTYTEEYD-HLISSFTGEGLEELINKIKSILSNKFK 367 +K + P DF+ I + L+ + + D H IS+ G G+ L +++ + Sbjct: 312 LNKWDGMTPGERDFVKIELERRLF--FVDFADIHFISALHGTGVGNLYQSVQNSFKSAVT 369 Query: 368 KLPFS 372 + P S Sbjct: 370 RWPTS 374 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS++FN L + AIV D+ G TRD + +G + DT GI + Sbjct: 5 IALVGRPNVGKSTMFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYILIDTGGISGDE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++++ K++ L +E AD++L L Sbjct: 65 HGMDEKMAKQSLLAIEEADVVLFL 88 >gi|317453509|emb|CBL87864.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|292806632|gb|ADE42446.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|292806574|gb|ADE42417.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|292806546|gb|ADE42403.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|289811471|ref|ZP_06542100.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 119 Score = 60.5 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 32/84 (38%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG DT GI T+ Sbjct: 16 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGTE 75 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 D VE +++ L +E AD++L + Sbjct: 76 DGVETRMAEQSLLAIEEADVVLFM 99 >gi|242255918|gb|ACS88943.1| GTPase [Helicobacter pylori] gi|242255920|gb|ACS88944.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|242255914|gb|ACS88941.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|269123837|ref|YP_003306414.1| small GTP-binding protein [Streptobacillus moniliformis DSM 12112] gi|268315163|gb|ACZ01537.1| small GTP-binding protein [Streptobacillus moniliformis DSM 12112] Length = 438 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 34/90 (37%), Positives = 52/90 (57%), Gaps = 3/90 (3%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G I +LG NAGKSS N + K+ +IV+DI GTTRD + + +G I DTAGIR Sbjct: 172 GLSIAVLGRPNAGKSSFVNKILNKERSIVSDIAGTTRDSIDSSFNYDGQKYTIIDTAGIR 231 Query: 279 ---ETDDIVEKEGIKRTFLEVENADLILLL 305 + +D +E + R ++ A++ +L+ Sbjct: 232 RKSKVEDDIEYYSVLRAVKAIQRANVCVLM 261 Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFN L ++IV D G TRD L + + G + DT G+ + Sbjct: 3 VAIVGRPNVGKSTLFNKLIGDRLSIVKDEIGVTRDRLYRETEWSGKKFLLVDTGGLEPRS 62 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 +D + + + + ++ AD I+ L Sbjct: 63 NDFMMNKIKDQARVAIDEADSIIFL 87 >gi|237709649|ref|ZP_04540130.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|265754281|ref|ZP_06089470.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|229456285|gb|EEO62006.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|263234990|gb|EEZ20545.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 396 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 42/121 (34%), Positives = 64/121 (52%), Gaps = 8/121 (6%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276 N + + G N+GKSSL NAL +D A+V+DIPGTT D ++ ++++G DT G Sbjct: 10 NRLHVALFGRRNSGKSSLINALTGQDTALVSDIPGTTTDTVSKAMEIQGIGPCLFIDTPG 69 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF------PKNIDFIFIGTKSD 330 + ++ E I RT +E D+ LLL E + +E KNI I + K+D Sbjct: 70 FDDEGELGEMR-IIRTLKAIERTDIALLLCEDEAHEEEKKWMKQLEEKNIPVILLLNKAD 128 Query: 331 L 331 + Sbjct: 129 I 129 >gi|261365613|ref|ZP_05978496.1| ribosome-associated GTPase EngA [Neisseria mucosa ATCC 25996] gi|288565845|gb|EFC87405.1| ribosome-associated GTPase EngA [Neisseria mucosa ATCC 25996] Length = 485 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 34/96 (35%), Positives = 59/96 (61%), Gaps = 5/96 (5%) Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---E 279 ++G N GKS+L NA+ ++ I D+ GTTRD + ID + EG I DTAG+R + Sbjct: 179 AVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSIHIDFEREGKPFTIIDTAGVRRRGK 238 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D+ VEK + + VE A++ +L+ ++++++I+ Sbjct: 239 VDEAVEKFSVIKAMQAVEAANVAVLV--LDAQQDIA 272 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280 I ++G N GKS+LFN L + A+V D+PG TRD + + DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKIGSKPYLVIDTGGFEPVV 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 D + E K+T V+ AD ++ L Sbjct: 65 DSGILHEMAKQTLQAVDEADAVVFL 89 >gi|122702699|emb|CAL88539.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702399|emb|CAL88390.1| GTPase [Helicobacter pylori] gi|122702503|emb|CAL88442.1| GTPase [Helicobacter pylori] gi|122702831|emb|CAL88605.1| GTPase [Helicobacter pylori] gi|195954199|gb|ACG58805.1| YphC [Helicobacter pylori] gi|195954201|gb|ACG58806.1| YphC [Helicobacter pylori] gi|195954203|gb|ACG58807.1| YphC [Helicobacter pylori] gi|195954213|gb|ACG58812.1| YphC [Helicobacter pylori] gi|195954221|gb|ACG58816.1| YphC [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122701373|emb|CAL88076.1| GTPase [Helicobacter pylori] gi|122702783|emb|CAL88581.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122701687|emb|CAL88233.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122701459|emb|CAL88119.1| GTPase [Helicobacter pylori] gi|122701697|emb|CAL88238.1| GTPase [Helicobacter pylori] gi|122702709|emb|CAL88544.1| GTPase [Helicobacter pylori] gi|242255954|gb|ACS88961.1| GTPase [Helicobacter pylori] gi|292806420|gb|ADE42340.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806432|gb|ADE42346.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806488|gb|ADE42374.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806530|gb|ADE42395.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806648|gb|ADE42454.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806658|gb|ADE42459.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702175|emb|CAL88278.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122701451|emb|CAL88115.1| GTPase [Helicobacter pylori] gi|242255898|gb|ACS88933.1| GTPase [Helicobacter pylori] gi|242255932|gb|ACS88950.1| GTPase [Helicobacter pylori] gi|292806698|gb|ADE42479.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122701611|emb|CAL88195.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122700807|emb|CAL87992.1| GTPase [Helicobacter pylori] gi|122700837|emb|CAL88007.1| GTPase [Helicobacter pylori] gi|122702163|emb|CAL88272.1| GTPase [Helicobacter pylori] gi|122702469|emb|CAL88425.1| GTPase [Helicobacter pylori] gi|242255966|gb|ACS88967.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122700701|emb|CAL87939.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ KE + +DLIL + Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYI 92 >gi|122700607|emb|CAL87892.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ KE + +DLIL + Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYV 92 >gi|122700615|emb|CAL87896.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|18075579|emb|CAD11185.1| GTP-binding protein [Helicobacter pylori] gi|122702797|emb|CAL88588.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|4467657|emb|CAB37780.1| GTP-binding protein homologue [Helicobacter pylori] gi|122701615|emb|CAL88197.1| GTPase [Helicobacter pylori] gi|122701685|emb|CAL88232.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|330894498|gb|EGH27159.1| GTP-binding protein Der [Pseudomonas syringae pv. mori str. 301020] Length = 490 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 48/185 (25%), Positives = 84/185 (45%), Gaps = 31/185 (16%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 ++G KI I+G N GKS+L N + +D IV D PGTTRD + I + + DTAG Sbjct: 193 KDGIKIAIIGRPNVGKSTLVNRMLGEDRVIVYDEPGTTRDSIYIPFERNEEKYTLIDTAG 252 Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLLKEIN------------------------ 309 +R+ I VEK + +T +++A++++ + + Sbjct: 253 VRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDAREGVVDHDLNLLGFALEAGRALVIA 312 Query: 310 -SKKEISFPKNIDFIFIGTKSDLYSTYTEEYD-HLISSFTGEGLEELINKIKSILSNKFK 367 +K + P DF+ I + L+ + + D H IS+ G G+ L +++ + Sbjct: 313 LNKWDGMTPGERDFVKIELERRLF--FVDFADIHFISAMHGTGVGNLYQSVQNSFKSAVT 370 Query: 368 KLPFS 372 + P S Sbjct: 371 RWPTS 375 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS++FN L + AIV D+ G TRD + +G + DT GI + Sbjct: 5 IALVGRPNVGKSTMFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYILIDTGGISGDE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++++ +++ L ++ AD++L L Sbjct: 65 HGMDEKMAEQSLLAIKEADVVLFL 88 >gi|292806474|gb|ADE42367.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 4/102 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI 320 ++ KE + +DLIL + K I S ++I + I Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREI 110 >gi|292806418|gb|ADE42339.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702647|emb|CAL88513.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702489|emb|CAL88435.1| GTPase [Helicobacter pylori] gi|122702495|emb|CAL88438.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702483|emb|CAL88432.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122701417|emb|CAL88098.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122701583|emb|CAL88181.1| GTPase [Helicobacter pylori] gi|122702269|emb|CAL88325.1| GTPase [Helicobacter pylori] gi|292806628|gb|ADE42444.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806638|gb|ADE42449.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|115605759|gb|ABJ15861.1| YphC [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|93004276|gb|ABE97058.1| YphC [Helicobacter pylori] gi|122700717|emb|CAL87947.1| GTPase [Helicobacter pylori] gi|122701717|emb|CAL88248.1| GTPase [Helicobacter pylori] gi|122702179|emb|CAL88280.1| GTPase [Helicobacter pylori] gi|195954219|gb|ACG58815.1| YphC [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|18075593|emb|CAD11192.1| GTP-binding protein [Helicobacter pylori] gi|99905869|gb|ABF68629.1| YphC [Helicobacter pylori] gi|122700765|emb|CAL87971.1| GTPase [Helicobacter pylori] gi|122700825|emb|CAL88001.1| GTPase [Helicobacter pylori] gi|122701713|emb|CAL88246.1| GTPase [Helicobacter pylori] gi|122701715|emb|CAL88247.1| GTPase [Helicobacter pylori] gi|122702333|emb|CAL88357.1| GTPase [Helicobacter pylori] gi|122702499|emb|CAL88440.1| GTPase [Helicobacter pylori] gi|122702553|emb|CAL88466.1| GTPase [Helicobacter pylori] gi|122702679|emb|CAL88529.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|319410209|emb|CBY90548.1| GTP-binding protein engA [Neisseria meningitidis WUE 2594] Length = 536 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 34/96 (35%), Positives = 59/96 (61%), Gaps = 5/96 (5%) Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---E 279 ++G N GKS+L NA+ ++ I D+ GTTRD + ID + EG I DTAG+R + Sbjct: 230 AVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSIHIDFEREGKPFTIIDTAGVRRRGK 289 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D+ VEK + + VE A++ +L+ ++++++I+ Sbjct: 290 VDEAVEKFSVIKAMQAVEAANVAVLV--LDAQQDIA 323 Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280 I ++G N GKS+LFN L + A+V D+PG TRD + + DT G Sbjct: 56 IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGFEPVV 115 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 D + E K+T V+ AD ++ L Sbjct: 116 DSGILHEMAKQTLQAVDEADAVVFL 140 >gi|317452851|emb|CBL87861.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|292806642|gb|ADE42451.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|292806548|gb|ADE42404.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|292806460|gb|ADE42360.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|260773381|ref|ZP_05882297.1| GTP-binding protein EngA [Vibrio metschnikovii CIP 69.14] gi|260612520|gb|EEX37723.1| GTP-binding protein EngA [Vibrio metschnikovii CIP 69.14] Length = 496 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 60/98 (61%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I + + + DTAG+R Sbjct: 209 KLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMQRDDREYVLIDTAGVRRR 268 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 I VEK + +T +E+A+++LL+ I++++ IS Sbjct: 269 KSINETVEKFSVVKTLKAIEDANVVLLV--IDARENIS 304 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD L + DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGENEFIVIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE + +++ ++ AD++L + Sbjct: 65 EGVETKMAQQSLAAIDEADVVLFM 88 >gi|242255890|gb|ACS88929.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ KE + +DLIL + Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYI 92 >gi|122702491|emb|CAL88436.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702689|emb|CAL88534.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702535|emb|CAL88457.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 4/102 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI 320 ++ KE + +DLIL + K I S ++I + I Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREI 110 >gi|122702261|emb|CAL88321.1| GTPase [Helicobacter pylori] gi|122702271|emb|CAL88326.1| GTPase [Helicobacter pylori] gi|122702339|emb|CAL88360.1| GTPase [Helicobacter pylori] gi|122702375|emb|CAL88378.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122701355|emb|CAL88067.1| GTPase [Helicobacter pylori] gi|122702169|emb|CAL88275.1| GTPase [Helicobacter pylori] gi|122702319|emb|CAL88350.1| GTPase [Helicobacter pylori] gi|122702421|emb|CAL88401.1| GTPase [Helicobacter pylori] gi|122702587|emb|CAL88483.1| GTPase [Helicobacter pylori] gi|292806660|gb|ADE42460.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122701469|emb|CAL88124.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122701581|emb|CAL88180.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 52/159 (32%), Positives = 79/159 (49%), Gaps = 18/159 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEIS-----FPKNIDFIFIGTKSD--- 330 ++ KE + +DLIL + K I S ++I F N + + K D Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKINPNCFLVINKIDNDK 128 Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363 ++S++ IS G+ LI+ I S L+ Sbjct: 129 EKERAYVFSSFGMPKSFNISVSHNRGISALIDAILSALN 167 >gi|122702167|emb|CAL88274.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122701337|emb|CAL88058.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122701647|emb|CAL88213.1| GTPase [Helicobacter pylori] gi|122701655|emb|CAL88217.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702211|emb|CAL88296.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122700905|emb|CAL88041.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122700767|emb|CAL87972.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 4/102 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI 320 ++ KE + +DLIL + K I S ++I + I Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREI 110 >gi|122700733|emb|CAL87955.1| GTPase [Helicobacter pylori] gi|122702349|emb|CAL88365.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122700633|emb|CAL87905.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKSLNLKAAQMSDLIL 90 >gi|4467667|emb|CAB37785.1| GTP-binding protein homologue [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKSLNLKAAQMSDLIL 90 >gi|18075595|emb|CAD11193.1| GTP-binding protein [Helicobacter pylori] gi|18075597|emb|CAD11194.1| GTP-binding protein [Helicobacter pylori] gi|18075599|emb|CAD11195.1| GTP-binding protein [Helicobacter pylori] gi|122700747|emb|CAL87962.1| GTPase [Helicobacter pylori] gi|122700749|emb|CAL87963.1| GTPase [Helicobacter pylori] gi|122700755|emb|CAL87966.1| GTPase [Helicobacter pylori] gi|122700761|emb|CAL87969.1| GTPase [Helicobacter pylori] gi|122700795|emb|CAL87986.1| GTPase [Helicobacter pylori] gi|122700801|emb|CAL87989.1| GTPase [Helicobacter pylori] gi|122700803|emb|CAL87990.1| GTPase [Helicobacter pylori] gi|122700817|emb|CAL87997.1| GTPase [Helicobacter pylori] gi|122700851|emb|CAL88014.1| GTPase [Helicobacter pylori] gi|122700877|emb|CAL88027.1| GTPase [Helicobacter pylori] gi|122700923|emb|CAL88050.1| GTPase [Helicobacter pylori] gi|122701535|emb|CAL88157.1| GTPase [Helicobacter pylori] gi|122701673|emb|CAL88226.1| GTPase [Helicobacter pylori] gi|122701681|emb|CAL88230.1| GTPase [Helicobacter pylori] gi|122701691|emb|CAL88235.1| GTPase [Helicobacter pylori] gi|122702245|emb|CAL88313.1| GTPase [Helicobacter pylori] gi|122702295|emb|CAL88338.1| GTPase [Helicobacter pylori] gi|122702317|emb|CAL88349.1| GTPase [Helicobacter pylori] gi|122702331|emb|CAL88356.1| GTPase [Helicobacter pylori] gi|122702363|emb|CAL88372.1| GTPase [Helicobacter pylori] gi|122702365|emb|CAL88373.1| GTPase [Helicobacter pylori] gi|122702381|emb|CAL88381.1| GTPase [Helicobacter pylori] gi|122702383|emb|CAL88382.1| GTPase [Helicobacter pylori] gi|122702431|emb|CAL88406.1| GTPase [Helicobacter pylori] gi|122702449|emb|CAL88415.1| GTPase [Helicobacter pylori] gi|122702477|emb|CAL88429.1| GTPase [Helicobacter pylori] gi|122702525|emb|CAL88452.1| GTPase [Helicobacter pylori] gi|122702825|emb|CAL88602.1| GTPase [Helicobacter pylori] gi|292806442|gb|ADE42351.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806484|gb|ADE42372.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806506|gb|ADE42383.1| GTP-binding protein-like protein [Helicobacter pylori] gi|317453523|emb|CBL87871.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|292806640|gb|ADE42450.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|292806634|gb|ADE42447.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|292806448|gb|ADE42354.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|291543597|emb|CBL16706.1| ribosome-associated GTPase EngA [Ruminococcus sp. 18P13] Length = 442 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 36/89 (40%), Positives = 56/89 (62%), Gaps = 5/89 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRE 279 K+ ++G NAGKSSL N +A ++ IV+DI GTTRD T+ + +G V I DTAGIR+ Sbjct: 179 KVAVIGKPNAGKSSLINKIAGEERVIVSDIAGTTRDATDTVVENEQGKFVFI-DTAGIRK 237 Query: 280 TDDIVEKE---GIKRTFLEVENADLILLL 305 I E+ + R ++ V+ AD+ +++ Sbjct: 238 KSRITERVEHFSVLRAYMAVDRADVCIIM 266 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 1/88 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + ++G N GKS+LFN L + ++IV D PG TRD + + G + DT GI +T Sbjct: 6 VAVVGRPNVGKSTLFNKLIGQRLSIVEDTPGVTRDRIYSKCEWRGREFMVVDTGGIEPDT 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308 DD++ + ++ + + AD+I+L+ ++ Sbjct: 66 DDVILAQMRRQAEVAIHRADVIVLVTDV 93 >gi|242255842|gb|ACS88905.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702521|emb|CAL88450.1| GTPase [Helicobacter pylori] gi|122702585|emb|CAL88482.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702687|emb|CAL88533.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702789|emb|CAL88584.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702567|emb|CAL88473.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702881|emb|CAL88630.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702455|emb|CAL88418.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702341|emb|CAL88361.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122701595|emb|CAL88187.1| GTPase [Helicobacter pylori] gi|122702771|emb|CAL88575.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702147|emb|CAL88264.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122700737|emb|CAL87957.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ KE + +DLIL + Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYI 92 >gi|115605755|gb|ABJ15859.1| YphC [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|99905865|gb|ABF68627.1| YphC [Helicobacter pylori] gi|122702641|emb|CAL88510.1| GTPase [Helicobacter pylori] gi|242255928|gb|ACS88948.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|93004280|gb|ABE97060.1| YphC [Helicobacter pylori] gi|122700815|emb|CAL87996.1| GTPase [Helicobacter pylori] gi|122700849|emb|CAL88013.1| GTPase [Helicobacter pylori] gi|122700873|emb|CAL88025.1| GTPase [Helicobacter pylori] gi|122702547|emb|CAL88463.1| GTPase [Helicobacter pylori] gi|292806580|gb|ADE42420.1| GTP-binding protein-like protein [Helicobacter pylori] gi|317452829|emb|CBL87850.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|320536777|ref|ZP_08036777.1| ribosome-associated GTPase EngA [Treponema phagedenis F0421] gi|320146373|gb|EFW37989.1| ribosome-associated GTPase EngA [Treponema phagedenis F0421] Length = 473 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 32/91 (35%), Positives = 53/91 (58%), Gaps = 3/91 (3%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 N ++ +LG N GKS+L N L K +IV+DI GTTRDV+ + +G ++DTAGI Sbjct: 203 NTIRLALLGKPNTGKSTLANYLTKSSASIVSDIAGTTRDVVHGNFSYKGMHFVLADTAGI 262 Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLL 305 R+ + + +E + R +++ D++ L Sbjct: 263 RKKNKVTAGIEYYSVLRAIKSLDSTDIVFYL 293 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/108 (33%), Positives = 58/108 (53%), Gaps = 10/108 (9%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET- 280 IVI+G N GKS+LFN +K AI + G TRD + + G V++ DT G + T Sbjct: 28 IVIVGRPNVGKSTLFNRFLRKRRAITDSVQGVTRDPIEEQAIVNGLPVRLMDTGGFKLTR 87 Query: 281 -----DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI 323 +D+++ +++T +E AD ILLL + + P++ +FI Sbjct: 88 SGLQDEDVMDSLVVEKTIEALERADRILLLLDAGH----ALPEDEEFI 131 >gi|319794354|ref|YP_004155994.1| ribosome-associated GTPase enga [Variovorax paradoxus EPS] gi|315596817|gb|ADU37883.1| ribosome-associated GTPase EngA [Variovorax paradoxus EPS] Length = 447 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ + G N GKS+L N ++ + D+PGTTRD +++ + G ++ DTAG+R Sbjct: 182 KLAVAGRPNVGKSTLINTWLGEERLVAFDMPGTTRDAISVPFERNGQRFELIDTAGLRRK 241 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +EK + +T +E+A+++LLL Sbjct: 242 GKVFEAIEKFSVVKTLQAIESANVVLLL 269 Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + ++G N GKS+LFN L + AIV D G TRD + L + + DT G + Sbjct: 5 VALVGRPNVGKSTLFNRLTQTRDAIVADYAGLTRDRHYGNGRLGKHEFIVIDTGGFEPDA 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 + KE K+T V AD+++ + Sbjct: 65 GSGIYKEMAKQTRQAVAEADVVIFV 89 >gi|298480725|ref|ZP_06998921.1| GTP-binding protein [Bacteroides sp. D22] gi|298273159|gb|EFI14724.1| GTP-binding protein [Bacteroides sp. D22] Length = 396 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 56/166 (33%), Positives = 84/166 (50%), Gaps = 18/166 (10%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276 N I + G N+GKSSL NAL +D+A+V++ PGTT D+++ ++++G DT G Sbjct: 10 NRLHITLFGRRNSGKSSLINALTGQDIALVSNTPGTTTDLVSKAMEIQGIGPCLFIDTPG 69 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISF---PKNIDFIFIGTK-- 328 + ++ E I RT +E D+ LLL E + +KEI KNI I + K Sbjct: 70 FDDEGELGELR-ISRTLKAIEKTDIALLLCEDTTFFHEKEILALLKEKNIPVIPVLNKID 128 Query: 329 ----SDLYSTYTEE----YDHLISSFTGEGLEELINKIKSILSNKF 366 SD +TY EE + LIS+ G+E + I L + F Sbjct: 129 IRENSDHLATYIEEQCKIHPLLISAKEKIGIELIRQAILEKLPSDF 174 >gi|261417942|ref|YP_003251624.1| GTP-binding protein EngA [Geobacillus sp. Y412MC61] gi|297529610|ref|YP_003670885.1| ribosome-associated GTPase EngA [Geobacillus sp. C56-T3] gi|319767246|ref|YP_004132747.1| ribosome-associated GTPase EngA [Geobacillus sp. Y412MC52] gi|261374399|gb|ACX77142.1| ribosome-associated GTPase EngA [Geobacillus sp. Y412MC61] gi|297252862|gb|ADI26308.1| ribosome-associated GTPase EngA [Geobacillus sp. C56-T3] gi|317112112|gb|ADU94604.1| ribosome-associated GTPase EngA [Geobacillus sp. Y412MC52] Length = 436 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/110 (34%), Positives = 58/110 (52%), Gaps = 3/110 (2%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L + + H +G E + K ++G N GKSSL NA+ ++ IV+DI GTTRD + Sbjct: 155 LLDAVVRHFPKGGGQEYEEDVIKFCLIGRPNVGKSSLVNAILGEERVIVSDIAGTTRDAV 214 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305 EG I DTAG+R+ I EK + R +E +D++L++ Sbjct: 215 DTSFVREGQEYVIIDTAGMRKRGKIYESTEKYSVLRALRAIERSDVVLVV 264 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/84 (28%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN + + ++IV D+PG TRD + + + + DT GI D Sbjct: 6 VAIVGRPNVGKSTIFNRIVGERISIVEDVPGVTRDRIYSRAEWLNHSFYLIDTGGIDIGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + + ++ + ++ AD+I+ + Sbjct: 66 EPLLVQIRQQAEIAIDEADVIIFM 89 >gi|122702367|emb|CAL88374.1| GTPase [Helicobacter pylori] gi|122702395|emb|CAL88388.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122701649|emb|CAL88214.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122700609|emb|CAL87893.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122700697|emb|CAL87937.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122700657|emb|CAL87917.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|18075583|emb|CAD11187.1| GTP-binding protein [Helicobacter pylori] gi|122702811|emb|CAL88595.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ KE + +DLIL + Sbjct: 69 ALLSKEIKAFNLKAAQMSDLILYV 92 >gi|56420756|ref|YP_148074.1| GTP-binding protein EngA [Geobacillus kaustophilus HTA426] gi|81819681|sp|Q5KXT0|DER_GEOKA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|56380598|dbj|BAD76506.1| GTP-binding protein [Geobacillus kaustophilus HTA426] Length = 436 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/110 (34%), Positives = 58/110 (52%), Gaps = 3/110 (2%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L + + H +G E + K ++G N GKSSL NA+ ++ IV+DI GTTRD + Sbjct: 155 LLDAVVRHFPKGGGQEYEEDVIKFCLIGRPNVGKSSLVNAILGEERVIVSDIAGTTRDAV 214 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305 EG I DTAG+R+ I EK + R +E +D++L++ Sbjct: 215 DTSFVREGQEYVIIDTAGMRKRGKIYESTEKYSVLRALRAIERSDVVLVV 264 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/84 (28%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN + + ++IV D+PG TRD + + + + DT GI D Sbjct: 6 VAIVGRPNVGKSTIFNRIVGERISIVEDVPGVTRDRIYSRAEWLNHSFYLIDTGGIDIGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + + ++ + ++ AD+I+ + Sbjct: 66 EPLLVQIRQQAEIAIDEADVIIFM 89 >gi|28868645|ref|NP_791264.1| GTP-binding protein EngA [Pseudomonas syringae pv. tomato str. DC3000] gi|213971514|ref|ZP_03399625.1| GTP-binding protein EngA [Pseudomonas syringae pv. tomato T1] gi|301386119|ref|ZP_07234537.1| GTP-binding protein EngA [Pseudomonas syringae pv. tomato Max13] gi|302060181|ref|ZP_07251722.1| GTP-binding protein EngA [Pseudomonas syringae pv. tomato K40] gi|302135124|ref|ZP_07261114.1| GTP-binding protein EngA [Pseudomonas syringae pv. tomato NCPPB 1108] gi|37999588|sp|Q886Y6|DER_PSESM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|28851883|gb|AAO54959.1| GTP-binding protein EngA [Pseudomonas syringae pv. tomato str. DC3000] gi|213923706|gb|EEB57290.1| GTP-binding protein EngA [Pseudomonas syringae pv. tomato T1] gi|330872875|gb|EGH07024.1| GTP-binding protein Der [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330965919|gb|EGH66179.1| GTP-binding protein Der [Pseudomonas syringae pv. actinidiae str. M302091] gi|331019376|gb|EGH99432.1| GTP-binding protein Der [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 489 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 48/185 (25%), Positives = 84/185 (45%), Gaps = 31/185 (16%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 ++G KI I+G N GKS+L N + +D IV D PGTTRD + I + + DTAG Sbjct: 192 KDGIKIAIIGRPNVGKSTLVNRMLGEDRVIVYDEPGTTRDSIYIPFERNEEKYTLIDTAG 251 Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLLKEIN------------------------ 309 +R+ I VEK + +T +++A++++ + + Sbjct: 252 VRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDAREGVVDHDLNLLGFALEAGRALVIA 311 Query: 310 -SKKEISFPKNIDFIFIGTKSDLYSTYTEEYD-HLISSFTGEGLEELINKIKSILSNKFK 367 +K + P DF+ I + L+ + + D H IS+ G G+ L +++ + Sbjct: 312 LNKWDGMTPGERDFVKIELERRLF--FVDFADIHFISALHGTGVGNLYQSVQNSFKSAVT 369 Query: 368 KLPFS 372 + P S Sbjct: 370 RWPTS 374 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS++FN L + AIV D+ G TRD + +G + DT GI + Sbjct: 5 IALVGRPNVGKSTMFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYILIDTGGISGDE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++++ +++ L +E AD++L L Sbjct: 65 HGMDEKMAEQSLLAIEEADVVLFL 88 >gi|332879048|ref|ZP_08446757.1| ribosome biogenesis GTPase Der [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332682997|gb|EGJ55885.1| ribosome biogenesis GTPase Der [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 437 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G NAGKSSL NA ++ IVTDI GTTRD + G+ + DTAGIR Sbjct: 177 RFAVVGRPNAGKSSLINAFIGEERNIVTDIAGTTRDSIYTRYTKFGFDFYLVDTAGIRRK 236 Query: 281 DDIVEK---EGIKRTFLEVENADLILLL 305 + + E + R+ +EN+D+ +L+ Sbjct: 237 NKVTEDLEYYSVMRSIRAIENSDVCILM 264 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/93 (39%), Positives = 52/93 (55%), Gaps = 1/93 (1%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277 G + I+G N GKS+LFN L + AIV+D GTTRD + G + DT G + Sbjct: 2 GNIVAIVGRPNVGKSTLFNRLTQTRHAIVSDEAGTTRDRQYGKSEWTGREFSVIDTGGWV 61 Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINS 310 +DDI E+E K+ L E AD+IL L ++ + Sbjct: 62 VNSDDIFEEEIRKQVTLATEEADVILFLVDVRN 94 >gi|255065190|ref|ZP_05317045.1| ribosome-associated GTPase EngA [Neisseria sicca ATCC 29256] gi|255050611|gb|EET46075.1| ribosome-associated GTPase EngA [Neisseria sicca ATCC 29256] Length = 535 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 34/96 (35%), Positives = 59/96 (61%), Gaps = 5/96 (5%) Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---E 279 ++G N GKS+L NA+ ++ I D+ GTTRD + ID + EG I DTAG+R + Sbjct: 229 AVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSIHIDFEREGKPFTIIDTAGVRRRGK 288 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D+ VEK + + VE A++ +L+ ++++++I+ Sbjct: 289 VDEAVEKFSVIKAMQAVEAANVAVLV--LDAQQDIA 322 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280 I ++G N GKS+LFN L + A+V D+PG TRD + + DT G Sbjct: 55 IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKIGSKPYLVIDTGGFEPVV 114 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 D + E K+TF V+ AD ++ L Sbjct: 115 DSGILHEMAKQTFQAVDEADAVVFL 139 >gi|122702733|emb|CAL88556.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702731|emb|CAL88555.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 TLLSKEIKALNLKAAQMSDLIL 90 >gi|122702459|emb|CAL88420.1| GTPase [Helicobacter pylori] gi|292806608|gb|ADE42434.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122701369|emb|CAL88074.1| GTPase [Helicobacter pylori] gi|122701407|emb|CAL88093.1| GTPase [Helicobacter pylori] gi|122701441|emb|CAL88110.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702157|emb|CAL88269.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 51/158 (32%), Positives = 78/158 (49%), Gaps = 18/158 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEIS-----FPKNIDFIFIGTKSD--- 330 ++ KE + +DLIL + K I S ++I F N + + K D Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREVFKTNPNCFLVINKIDNDK 128 Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362 +S++ IS G+ LI+ + S+L Sbjct: 129 EKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLSVL 166 >gi|122700781|emb|CAL87979.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122700901|emb|CAL88039.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122700857|emb|CAL88017.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122700641|emb|CAL87909.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKTAQMSDLIL 90 >gi|122700721|emb|CAL87949.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 51/158 (32%), Positives = 78/158 (49%), Gaps = 18/158 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEIS-----FPKNIDFIFIGTKSD--- 330 ++ KE + +DLIL + K I S +++ F N + + K D Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128 Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362 +S++ IS G+ LI+ I S+L Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISTLIDAILSVL 166 >gi|122700729|emb|CAL87953.1| GTPase [Helicobacter pylori] gi|122701679|emb|CAL88229.1| GTPase [Helicobacter pylori] gi|122702581|emb|CAL88480.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122700629|emb|CAL87903.1| GTPase [Helicobacter pylori] gi|122700703|emb|CAL87940.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|115486387|ref|NP_001068337.1| Os11g0638000 [Oryza sativa Japonica Group] gi|113645559|dbj|BAF28700.1| Os11g0638000 [Oryza sativa Japonica Group] Length = 315 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 7/93 (7%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRET 280 I I+G N GKSS+ NAL +D IV+ + GTTRD + + E G K+ DTAGIR Sbjct: 25 IAIVGRPNVGKSSILNALVGEDRTIVSPVSGTTRDAIDTEFTTEDGQKYKLIDTAGIRRR 84 Query: 281 DDIV------EKEGIKRTFLEVENADLILLLKE 307 + E +KR F + +D++ L+ E Sbjct: 85 AAVASAGSTTETLSVKRAFRAIRRSDVVALVVE 117 >gi|93004284|gb|ABE97062.1| YphC [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|18075563|emb|CAD11177.1| GTP-binding protein [Helicobacter pylori] gi|122702795|emb|CAL88587.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|315123111|ref|YP_004065117.1| GTP-binding protein EngA [Pseudoalteromonas sp. SM9913] gi|315016872|gb|ADT70209.1| GTP-binding protein EngA [Pseudoalteromonas sp. SM9913] Length = 489 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 49/84 (58%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L + A+V D PG TRD + +G+ + DT GI ++ Sbjct: 5 IALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQANYDGFEFIVVDTGGIDGSE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + +E E ++ L +E AD++L L Sbjct: 65 EGIETEMADQSLLAIEEADIVLFL 88 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 59/98 (60%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 K+ I+G N GKS+L N + +D IV D+PGTTRD + I + + DTAG+R Sbjct: 203 KLAIIGRPNVGKSTLTNRILGEDRVIVYDMPGTTRDSIYIPMTRNDKEYILIDTAGVRKR 262 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + D+VEK + +T +E+ +++LL+ ++++ IS Sbjct: 263 KKVSDVVEKFSVIKTLQAIEDCNVVLLV--VDARDGIS 298 >gi|122702475|emb|CAL88428.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702837|emb|CAL88608.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702739|emb|CAL88559.1| GTPase [Helicobacter pylori] gi|292806494|gb|ADE42377.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702549|emb|CAL88464.1| GTPase [Helicobacter pylori] gi|292806680|gb|ADE42470.1| GTP-binding protein-like protein [Helicobacter pylori] gi|317452843|emb|CBL87857.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122701329|emb|CAL88054.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122701633|emb|CAL88206.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122701479|emb|CAL88129.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122700879|emb|CAL88028.1| GTPase [Helicobacter pylori] gi|122701623|emb|CAL88201.1| GTPase [Helicobacter pylori] gi|122701677|emb|CAL88228.1| GTPase [Helicobacter pylori] gi|122702155|emb|CAL88268.1| GTPase [Helicobacter pylori] gi|122702241|emb|CAL88311.1| GTPase [Helicobacter pylori] gi|122702369|emb|CAL88375.1| GTPase [Helicobacter pylori] gi|122702397|emb|CAL88389.1| GTPase [Helicobacter pylori] gi|122702511|emb|CAL88446.1| GTPase [Helicobacter pylori] gi|317453543|emb|CBL87881.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122700713|emb|CAL87945.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122700673|emb|CAL87925.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 51/159 (32%), Positives = 79/159 (49%), Gaps = 18/159 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIVLNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEIS-----FPKNIDFIFIGTKSD--- 330 ++ KE + +DLIL + K I S +++ F N + + K D Sbjct: 69 ALLSKEIKALNLKATQMSDLILYVVDGKSIPSDEDLKLFREVFKTNPNCFLVINKIDNDK 128 Query: 331 ------LYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363 +S++ IS G+ LI+ I S+L+ Sbjct: 129 EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSVLN 167 >gi|325268712|ref|ZP_08135341.1| ribosome-associated GTPase EngA [Prevotella multiformis DSM 16608] gi|324988956|gb|EGC20910.1| ribosome-associated GTPase EngA [Prevotella multiformis DSM 16608] Length = 437 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G NAGKSS+ NA +D IVT+I GTTRD + + G+ + DTAGIR Sbjct: 177 RFAVVGRPNAGKSSIINAFIGEDRNIVTEIAGTTRDSIYTRYNKFGFDFYLVDTAGIRRK 236 Query: 281 DDIVEK---EGIKRTFLEVENADLILLL 305 + + E + R+ +EN+D+ +L+ Sbjct: 237 NKVTEDLEFYSVMRSIRSIENSDVCILM 264 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/85 (40%), Positives = 46/85 (54%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 + I+G N GKS+LFN L + AIV+D GTTRD G + DT G + ++ Sbjct: 5 VAIVGRPNVGKSTLFNRLTQTRHAIVSDTAGTTRDRQYGKCQWNGREFSVVDTGGWVVKS 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 DDI E K+ + E ADL+L L Sbjct: 65 DDIFEDAIRKQVLVATEEADLVLFL 89 >gi|317453513|emb|CBL87866.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|317452839|emb|CBL87855.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|325106044|ref|YP_004275698.1| ribosome-associated GTPase EngA [Pedobacter saltans DSM 12145] gi|324974892|gb|ADY53876.1| ribosome-associated GTPase EngA [Pedobacter saltans DSM 12145] Length = 433 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/85 (41%), Positives = 51/85 (60%), Gaps = 3/85 (3%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 I+G N GKSS+ NAL KD IVT++ GTTRD + I G+ + DTAG+R+ + Sbjct: 178 IVGRPNVGKSSMINALLGKDRNIVTNVAGTTRDSIHIHYKQFGHDFMLVDTAGLRKKTKV 237 Query: 284 ---VEKEGIKRTFLEVENADLILLL 305 +E + RT +E AD+I+L+ Sbjct: 238 RENIEFYSVMRTIGALEEADVIILM 262 Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust. Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 1/93 (1%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277 G + I+G N GKS+L+N L + AIV D+ G TRD + + DT G + Sbjct: 2 GNIVAIVGRPNVGKSTLYNRLTETRKAIVDDMSGVTRDRHYGLAEWTDKTFTVIDTGGYV 61 Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINS 310 ++DI E ++ + +E A I+ + ++ + Sbjct: 62 ANSEDIFEIAIREQVLIAIEEATAIIFMVDVTT 94 >gi|292806436|gb|ADE42348.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|242255912|gb|ACS88940.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|308189713|ref|YP_003922644.1| GTP-binding protein [Mycoplasma fermentans JER] gi|319776899|ref|YP_004136550.1| gtp-binding protein enga [Mycoplasma fermentans M64] gi|238809685|dbj|BAH69475.1| hypothetical protein [Mycoplasma fermentans PG18] gi|307624455|gb|ADN68760.1| GTP-binding protein [Mycoplasma fermentans JER] gi|318037974|gb|ADV34173.1| GTP-binding protein engA [Mycoplasma fermentans M64] Length = 435 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 37/99 (37%), Positives = 64/99 (64%), Gaps = 5/99 (5%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-- 277 +K+ I+G N+GKSS+ N LA ++ +IV+DI GTTRD + + ++ + +I DTAGI Sbjct: 172 FKLSIIGRPNSGKSSMLNRLANENRSIVSDIAGTTRDSVKSIVKIKDEVFEIIDTAGITR 231 Query: 278 -RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + +D V+ +KR ++ ++L L+L I+S +E+S Sbjct: 232 KSKIEDSVDHYALKRAMSSLDESNLSLVL--IDSTQELS 268 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 2/85 (2%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS+LFN L K +I+ D PG TRD L G +K+ DT GI E + Sbjct: 6 IAIIGKPNVGKSTLFNRLIGKRSSIIYDRPGVTRDRLYETFSWNGKEIKVIDTGGI-EIE 64 Query: 282 DIVEKEGIK-RTFLEVENADLILLL 305 + +E I+ + + +E A++I+ + Sbjct: 65 NRPFQEHIQIQAKIAIEEANVIIFM 89 >gi|229822882|ref|ZP_04448952.1| hypothetical protein GCWU000282_00172 [Catonella morbi ATCC 51271] gi|229787695|gb|EEP23809.1| hypothetical protein GCWU000282_00172 [Catonella morbi ATCC 51271] Length = 437 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 51/183 (27%), Positives = 90/183 (49%), Gaps = 30/183 (16%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRE 279 K +G N GKSSL NA+ K++ IV++I GTTR+ + D EG + DTAGIR+ Sbjct: 177 KFCFIGRPNVGKSSLVNAILKEERVIVSNIEGTTREAVDTHFTDEEGTRYTMIDTAGIRK 236 Query: 280 TDDI---VEKEGIKRTFLEVENADLILL-------LKEINSK-KEISFPKNIDFIFIGTK 328 + EK + R +E +D++ L ++E + K ++ + + K Sbjct: 237 RGKVYENTEKYSVLRAMSAIERSDIVCLVLDAETGIREQDKKVAGYAYEAGKGMVILVNK 296 Query: 329 SD-------LYSTYTEE----YDHL-------ISSFTGEGLEELINKIKSILSNKFKKLP 370 D L+ T+T+E + +L +S+ TG+ L +L +K+I N+ +++ Sbjct: 297 WDAVDKSDKLFETFTKEIRAHFQYLTFAPILFVSAHTGQRLNKLPELLKTIYDNRHRRIQ 356 Query: 371 FSI 373 S+ Sbjct: 357 SSV 359 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 47/88 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS++FN L + ++IV D PG TRD + G ++ DT GI D Sbjct: 6 VALVGRPNVGKSTIFNRLVGERLSIVEDYPGVTRDRIYATGKWLGREFRVIDTGGIDMID 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN 309 + + + + + +E AD+I+ L + Sbjct: 66 EPLMDQVRYQADIAMEEADVIVFLTSMQ 93 >gi|122702703|emb|CAL88541.1| GTPase [Helicobacter pylori] gi|292806446|gb|ADE42353.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702663|emb|CAL88521.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122701357|emb|CAL88068.1| GTPase [Helicobacter pylori] gi|122701537|emb|CAL88158.1| GTPase [Helicobacter pylori] gi|292806600|gb|ADE42430.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122701689|emb|CAL88234.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122701351|emb|CAL88065.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702265|emb|CAL88323.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702135|emb|CAL88258.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122700779|emb|CAL87978.1| GTPase [Helicobacter pylori] gi|122700875|emb|CAL88026.1| GTPase [Helicobacter pylori] gi|122701457|emb|CAL88118.1| GTPase [Helicobacter pylori] gi|122701471|emb|CAL88125.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|18075585|emb|CAD11188.1| GTP-binding protein [Helicobacter pylori] gi|122700727|emb|CAL87952.1| GTPase [Helicobacter pylori] gi|122700751|emb|CAL87964.1| GTPase [Helicobacter pylori] gi|122700921|emb|CAL88049.1| GTPase [Helicobacter pylori] gi|122702487|emb|CAL88434.1| GTPase [Helicobacter pylori] gi|122702583|emb|CAL88481.1| GTPase [Helicobacter pylori] gi|292806536|gb|ADE42398.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|71735846|ref|YP_273582.1| GTP-binding protein EngA [Pseudomonas syringae pv. phaseolicola 1448A] gi|257487194|ref|ZP_05641235.1| GTP-binding protein EngA [Pseudomonas syringae pv. tabaci ATCC 11528] gi|123637657|sp|Q48LZ0|DER_PSE14 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|71556399|gb|AAZ35610.1| GTP-binding protein engA [Pseudomonas syringae pv. phaseolicola 1448A] gi|320322917|gb|EFW79007.1| GTP-binding protein EngA [Pseudomonas syringae pv. glycinea str. B076] gi|320329960|gb|EFW85948.1| GTP-binding protein EngA [Pseudomonas syringae pv. glycinea str. race 4] gi|330985018|gb|EGH83121.1| GTP-binding protein Der [Pseudomonas syringae pv. lachrymans str. M301315] gi|331009189|gb|EGH89245.1| GTP-binding protein Der [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 490 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 48/185 (25%), Positives = 84/185 (45%), Gaps = 31/185 (16%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 ++G KI I+G N GKS+L N + +D IV D PGTTRD + I + + DTAG Sbjct: 193 KDGIKIAIIGRPNVGKSTLVNRMLGEDRVIVYDEPGTTRDSIYIPFERNEEKYTLIDTAG 252 Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLLKEIN------------------------ 309 +R+ I VEK + +T +++A++++ + + Sbjct: 253 VRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDAREGVVDHDLNLLGFALEAGRALVIA 312 Query: 310 -SKKEISFPKNIDFIFIGTKSDLYSTYTEEYD-HLISSFTGEGLEELINKIKSILSNKFK 367 +K + P DF+ I + L+ + + D H IS+ G G+ L +++ + Sbjct: 313 LNKWDGMTPGERDFVKIELERRLF--FVDFADIHFISAMHGTGVGNLYQSVQNSFKSAVT 370 Query: 368 KLPFS 372 + P S Sbjct: 371 RWPTS 375 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS++FN L + AIV D+ G TRD + +G + DT GI + Sbjct: 5 IALVGRPNVGKSTMFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYILIDTGGISGDE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++++ +++ L +E AD++L L Sbjct: 65 HGMDEKMAEQSLLAIEEADVVLFL 88 >gi|116620165|ref|YP_822321.1| GTP-binding protein EngA [Candidatus Solibacter usitatus Ellin6076] gi|116223327|gb|ABJ82036.1| small GTP-binding protein [Candidatus Solibacter usitatus Ellin6076] Length = 441 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 36/90 (40%), Positives = 50/90 (55%), Gaps = 3/90 (3%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G K+ I+G N GKS+L NAL D AIV+ I GTTRD + + +G DTAGIR Sbjct: 181 GIKVAIIGRPNVGKSTLLNALTGADRAIVSPIAGTTRDAVDETVSHDGQEYVFVDTAGIR 240 Query: 279 ---ETDDIVEKEGIKRTFLEVENADLILLL 305 +T D+ EK + + A ++LL+ Sbjct: 241 RKGKTHDMAEKLSVVMARRHIRMAHVVLLV 270 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 33/95 (34%), Positives = 54/95 (56%), Gaps = 3/95 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 +VI+G N GKS+LFN + + AIV D PG TRD L + +G ++ DT GI D Sbjct: 8 VVIVGRPNVGKSTLFNRITGQRRAIVGDEPGITRDRLHGAAEHDGRHFELIDTGGIVVHD 67 Query: 282 -DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + + + +K+ ++ AD I+ L ++ + EI+ Sbjct: 68 QEYIPAQILKQAEFALKAADHIIFL--VDGRAEIT 100 >gi|292806498|gb|ADE42379.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|292806480|gb|ADE42370.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ KE + +DLIL + Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYI 92 >gi|292806434|gb|ADE42347.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|242255922|gb|ACS88945.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|152993507|ref|YP_001359228.1| GTP-binding protein EngA [Sulfurovum sp. NBC37-1] gi|151425368|dbj|BAF72871.1| GTP-binding protein, Era/ThdF family [Sulfurovum sp. NBC37-1] Length = 467 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 36/90 (40%), Positives = 53/90 (58%), Gaps = 2/90 (2%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 N + I+G N GKSSL NAL ++ ++V+D+ GTT D + ++ Y + DTAGI Sbjct: 201 NKISVAIIGRVNTGKSSLLNALLGEERSVVSDVAGTTIDPIDETIEHNDYEITFVDTAGI 260 Query: 278 RETDDIV--EKEGIKRTFLEVENADLILLL 305 R+ IV EK + RT +E AD+ LL+ Sbjct: 261 RKRSKIVGIEKYALGRTEAMLEKADIALLI 290 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 30/64 (46%), Positives = 40/64 (62%), Gaps = 7/64 (10%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV----LTIDLDLEGYLVKISD 273 N K+ ILG N GKSSLFN LA++ AI +D+ GTTRD+ +TI + E ++ D Sbjct: 5 NLTKVAILGRPNVGKSSLFNRLARQRDAITSDVSGTTRDIKKRLVTISGNRE---FEVID 61 Query: 274 TAGI 277 T GI Sbjct: 62 TGGI 65 >gi|147677317|ref|YP_001211532.1| GTPase [Pelotomaculum thermopropionicum SI] gi|146273414|dbj|BAF59163.1| predicted GTPase [Pelotomaculum thermopropionicum SI] Length = 411 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 44/103 (42%), Positives = 61/103 (59%), Gaps = 7/103 (6%) Query: 207 ISQGKLGEIIRNG-YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-L 264 +S G L E R I I G NAGKSSL NAL +++AIV+D+PGTT D + ++ L Sbjct: 1 MSVGSLNETPRGSRLHIAIFGRRNAGKSSLINALTNQNIAIVSDVPGTTTDPVYKSMEIL 60 Query: 265 EGYLVKISDTAGIRETDDIVE--KEGIKRTFLEVENADLILLL 305 V I DTAGI DD+ E + +K+T + ADL++L+ Sbjct: 61 PVGPVVIIDTAGI---DDVGELGQLRVKKTIGVLNKADLMVLV 100 >gi|122701415|emb|CAL88097.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122700775|emb|CAL87976.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|114798294|ref|YP_759502.1| GTP-binding protein EngA [Hyphomonas neptunium ATCC 15444] gi|122942672|sp|Q0C441|DER_HYPNA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|114738468|gb|ABI76593.1| GTP-binding protein EngA [Hyphomonas neptunium ATCC 15444] Length = 510 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 74/161 (45%), Gaps = 18/161 (11%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE- 279 K+ I+G N GKS+LFN L K +A+V D PG TRD D L + + DTAG Sbjct: 4 KLAIVGRPNVGKSTLFNRLVGKKIALVDDQPGVTRDRKMADGRLASLPLSLIDTAGFDNV 63 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFP-----KNIDFIFIGTKSDL 331 DD +E +T + ADL+L L + + ++ +F NI + K++ Sbjct: 64 NDDSLEARMRAQTEAAIAEADLVLFLVDARVGVTPEDETFAGLLRKANIPVVLAANKAEG 123 Query: 332 YSTYTEEYDHL---------ISSFTGEGLEELINKIKSILS 363 + +D +S+ GEG+ EL I++ L Sbjct: 124 RAGEAGVFDAFRLGFGEPVGLSAEHGEGMAELYESIRNALG 164 Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 29/96 (30%), Positives = 54/96 (56%), Gaps = 3/96 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G NAGKS+L N L + D + G TRD +T++ + EG +++ DTAG+R Sbjct: 231 RLAIVGRPNAGKSTLINQLLQSDRMLTGPEAGITRDSITVNWEWEGRQIRLVDTAGLRRK 290 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKE 313 + + +E+ T ++ AD++ L+ + + E Sbjct: 291 NKVQERLERMSTAETIRSLKYADIVALVMDAHEAME 326 >gi|18075581|emb|CAD11186.1| GTP-binding protein [Helicobacter pylori] gi|122702305|emb|CAL88343.1| GTPase [Helicobacter pylori] gi|122702307|emb|CAL88344.1| GTPase [Helicobacter pylori] gi|122702321|emb|CAL88351.1| GTPase [Helicobacter pylori] gi|122702353|emb|CAL88367.1| GTPase [Helicobacter pylori] gi|122702799|emb|CAL88589.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|18075587|emb|CAD11189.1| GTP-binding protein [Helicobacter pylori] gi|18075589|emb|CAD11190.1| GTP-binding protein [Helicobacter pylori] gi|18075591|emb|CAD11191.1| GTP-binding protein [Helicobacter pylori] gi|122700753|emb|CAL87965.1| GTPase [Helicobacter pylori] gi|122700759|emb|CAL87968.1| GTPase [Helicobacter pylori] gi|122700763|emb|CAL87970.1| GTPase [Helicobacter pylori] gi|122700835|emb|CAL88006.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|325130014|gb|EGC52808.1| GTP-binding protein [Neisseria meningitidis OX99.30304] Length = 485 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 34/96 (35%), Positives = 59/96 (61%), Gaps = 5/96 (5%) Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---E 279 ++G N GKS+L NA+ ++ I D+ GTTRD + ID + EG I DTAG+R + Sbjct: 179 AVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSIHIDFEREGKPFTIIDTAGVRRRGK 238 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D+ VEK + + VE A++ +L+ ++++++I+ Sbjct: 239 VDEAVEKFSVIKAMQAVEAANVAVLV--LDAQQDIA 272 Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280 I ++G N GKS+LFN L + A+V D+PG TRD + + DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGFEPVV 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 D + E K+T V+ AD ++ L Sbjct: 65 DSGILHEMAKQTLQAVDEADAVVFL 89 >gi|292806430|gb|ADE42345.1| GTP-binding protein-like protein [Helicobacter pylori] gi|317452821|emb|CBL87846.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|290968707|ref|ZP_06560245.1| ribosome-associated GTPase EngA [Megasphaera genomosp. type_1 str. 28L] gi|290781360|gb|EFD93950.1| ribosome-associated GTPase EngA [Megasphaera genomosp. type_1 str. 28L] Length = 443 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 34/86 (39%), Positives = 49/86 (56%), Gaps = 2/86 (2%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFNA+ KK +AIV DIPG TRD + D + G + DT GI D Sbjct: 6 VAVVGRPNVGKSTLFNAIVKKRIAIVEDIPGVTRDRIYFDAEWLGREFTMIDTGGIEFVD 65 Query: 282 --DIVEKEGIKRTFLEVENADLILLL 305 D + + + L + AD+IL + Sbjct: 66 AADRIFTDMRYQAELAIREADVILFV 91 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 34/110 (30%), Positives = 56/110 (50%), Gaps = 3/110 (2%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L + + HI E + I ++G N GKSS+ NAL ++ IV+++PGTTRD + Sbjct: 157 LLDSVLQHIQHLPTPEEREDTIHIALVGRPNVGKSSMTNALLGQERVIVSNVPGTTRDSI 216 Query: 259 TIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLL 305 + DTAG+R + D VE+ + R V+ +D+ +L+ Sbjct: 217 DTYWTYNDTSFVLIDTAGMRRKAKVDIPVERYSVVRALRAVDRSDVAVLV 266 >gi|282860196|ref|ZP_06269270.1| ribosome-associated GTPase EngA [Prevotella bivia JCVIHMP010] gi|282587017|gb|EFB92248.1| ribosome-associated GTPase EngA [Prevotella bivia JCVIHMP010] Length = 437 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G NAGKSSL NA +D IVT+I GTTRD + + G+ + DTAGIR Sbjct: 177 RFAVVGRPNAGKSSLINAFIGEDRNIVTEIAGTTRDSIYTRYNKFGFDFYLVDTAGIRRK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + + +E + R+ +EN+D+ +L+ Sbjct: 237 NKVSEDLEFYSVMRSIRSIENSDVCILM 264 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 + I+G N GKS+LFN L K AIV+D+ GTTRD G + DT G + ++ Sbjct: 5 VAIVGRPNVGKSTLFNRLTKTRHAIVSDVAGTTRDRQYGKCTWNGREFSVVDTGGWVVKS 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 DDI E ++ + E ADL+L + Sbjct: 65 DDIFEDAIRQQVLVATEEADLVLFV 89 >gi|122702439|emb|CAL88410.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKTLNLKAAQMSDLIL 90 >gi|122701579|emb|CAL88179.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702275|emb|CAL88328.1| GTPase [Helicobacter pylori] Length = 168 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 36/82 (43%), Positives = 49/82 (59%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LAK+ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 8 IAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 66 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 + KE + +DLIL Sbjct: 67 AFLSKEIKAFNLKAAQMSDLIL 88 >gi|122702137|emb|CAL88259.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122700907|emb|CAL88042.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122700711|emb|CAL87944.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|99905881|gb|ABF68635.1| YphC [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|108864612|gb|ABA94923.2| small GTP-binding protein domain containing protein, expressed [Oryza sativa Japonica Group] Length = 344 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 7/93 (7%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRET 280 I I+G N GKSS+ NAL +D IV+ + GTTRD + + E G K+ DTAGIR Sbjct: 54 IAIVGRPNVGKSSILNALVGEDRTIVSPVSGTTRDAIDTEFTTEDGQKYKLIDTAGIRRR 113 Query: 281 DDI------VEKEGIKRTFLEVENADLILLLKE 307 + E +KR F + +D++ L+ E Sbjct: 114 AAVASAGSTTETLSVKRAFRAIRRSDVVALVVE 146 >gi|317452833|emb|CBL87852.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|292806588|gb|ADE42424.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|292806582|gb|ADE42421.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|292806528|gb|ADE42394.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|195954205|gb|ACG58808.1| YphC [Helicobacter pylori] gi|195954207|gb|ACG58809.1| YphC [Helicobacter pylori] gi|195954223|gb|ACG58817.1| YphC [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702617|emb|CAL88498.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702539|emb|CAL88459.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702387|emb|CAL88384.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702637|emb|CAL88508.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702251|emb|CAL88316.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122701613|emb|CAL88196.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122700593|emb|CAL87885.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|115605757|gb|ABJ15860.1| YphC [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|292806572|gb|ADE42416.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|242255936|gb|ACS88952.1| GTPase [Helicobacter pylori] gi|242255938|gb|ACS88953.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|225077176|ref|ZP_03720375.1| hypothetical protein NEIFLAOT_02231 [Neisseria flavescens NRL30031/H210] gi|224951524|gb|EEG32733.1| hypothetical protein NEIFLAOT_02231 [Neisseria flavescens NRL30031/H210] Length = 486 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 34/96 (35%), Positives = 59/96 (61%), Gaps = 5/96 (5%) Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---E 279 ++G N GKS+L NA+ ++ I D+ GTTRD + ID + EG I DTAG+R + Sbjct: 180 AVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSIHIDFEREGKPFTIIDTAGVRRRGK 239 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D+ VEK + + VE A++ +L+ ++++++I+ Sbjct: 240 VDEAVEKFSVIKAMQAVEAANVAVLV--LDAQQDIA 273 Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280 I ++G N GKS+LFN L + A+V D+PG TRD + + DT G Sbjct: 6 IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGFEPVV 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 D + E K+T V+ AD ++ L Sbjct: 66 DSGILHEMAKQTLQAVDEADAVVFL 90 >gi|210622342|ref|ZP_03293111.1| hypothetical protein CLOHIR_01059 [Clostridium hiranonis DSM 13275] gi|210154330|gb|EEA85336.1| hypothetical protein CLOHIR_01059 [Clostridium hiranonis DSM 13275] Length = 441 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/110 (34%), Positives = 60/110 (54%), Gaps = 3/110 (2%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L ++I ++ +G EI + K+ I G NAGKSS+ N + +D IV+ I GTTRD + Sbjct: 159 LLDEIVANFPEGLNTEIDEDTIKVAITGKPNAGKSSILNNILGEDRVIVSPIAGTTRDAV 218 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305 + G + DTAG+R + VEK + R V+ AD++L++ Sbjct: 219 DTYFEKNGQNYLLIDTAGLRRKSKVYESVEKYSVIRAMSAVDRADVVLIV 268 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 75/157 (47%), Gaps = 22/157 (14%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + ++G N GKS++FN A + ++IV D PG TRD + +++ + DT GI ++ Sbjct: 9 VAVVGRPNVGKSTIFNKFAGRRISIVEDTPGVTRDRIFTEVEWLNKYFTLIDTGGIEPKS 68 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP----------KNIDFIFIGTKSD 330 DDI+ + + L ++ A +IL++ ++ K+ I+ N I + K D Sbjct: 69 DDIIVSQMRNQAMLAMDMAHVILMV--VDGKQGITAADREIAETLRRTNKPVILVVNKID 126 Query: 331 LYSTYTEEYDHL---------ISSFTGEGLEELINKI 358 S Y YD IS GL +L+++I Sbjct: 127 SMSQYDNVYDFYELGLGEPFAISGANSMGLGDLLDEI 163 >gi|122702435|emb|CAL88408.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702423|emb|CAL88402.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702705|emb|CAL88542.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 4/102 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI 320 ++ KE + +DLIL + K I S ++I + I Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREI 110 >gi|122701545|emb|CAL88162.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702125|emb|CAL88253.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ KE + +DLIL + Sbjct: 69 ALLSKEIKAFNLKAAQMSDLILYV 92 >gi|122701419|emb|CAL88099.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKTAQMSDLIL 90 >gi|122700847|emb|CAL88012.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRRIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|242255906|gb|ACS88937.1| GTPase [Helicobacter pylori] gi|242255908|gb|ACS88938.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|237732490|ref|ZP_04562971.1| GTP-binding protein EngA [Citrobacter sp. 30_2] gi|226908029|gb|EEH93947.1| GTP-binding protein EngA [Citrobacter sp. 30_2] Length = 504 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 61/98 (62%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + +D +V D+PGTTRD + I + + + DTAG+R+ Sbjct: 218 KLAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMQRDEREYVLIDTAGVRKR 277 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 I VEK + +T +E+A++++L+ I++++ IS Sbjct: 278 GKITEAVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 313 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG DT GI T+ Sbjct: 19 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 78 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 D VE +++ L +E AD++L + Sbjct: 79 DGVETRMAEQSLLAIEEADVVLFM 102 >gi|261345330|ref|ZP_05972974.1| ribosome-associated GTPase EngA [Providencia rustigianii DSM 4541] gi|282566664|gb|EFB72199.1| ribosome-associated GTPase EngA [Providencia rustigianii DSM 4541] Length = 491 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 62/98 (63%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + +D +V D+PGTTRD + I ++ + + DTAG+R+ Sbjct: 206 KLAIVGRPNVGKSTLTNRILGEDRVVVFDMPGTTRDSIYIPMERDEREYILIDTAGVRKR 265 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + VEK + +T +E+A+++LL+ I++++ IS Sbjct: 266 GKVTETVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 301 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG+ I DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGHEFIIIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE ++ +E AD++L + Sbjct: 65 EGVETHMAAQSLQAIEEADVVLFM 88 >gi|207108954|ref|ZP_03243116.1| GTP-binding protein EngA [Helicobacter pylori HPKX_438_CA4C1] Length = 121 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 11 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 70 ALLSKEIKALNLKAAQMSDLIL 91 >gi|122702427|emb|CAL88404.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702329|emb|CAL88355.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122701607|emb|CAL88193.1| GTPase [Helicobacter pylori] gi|122702199|emb|CAL88290.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122701533|emb|CAL88156.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|4467669|emb|CAB37786.1| GTP-binding protein homologue [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ KE + +DLIL + Sbjct: 69 ALLSKEIKAFNLKAAQMSDLILYV 92 >gi|23015371|ref|ZP_00055149.1| COG1160: Predicted GTPases [Magnetospirillum magnetotacticum MS-1] Length = 464 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 36/87 (41%), Positives = 49/87 (56%), Gaps = 1/87 (1%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR- 278 + + I+G N GKS+LFN L K +AIV D+PG TRD L G ++ DTAG Sbjct: 3 FTVAIIGRPNVGKSTLFNRLVGKRLAIVHDLPGVTRDRREGRASLLGMEFQVVDTAGFED 62 Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL 305 +T D +E +T + V AD+ LLL Sbjct: 63 DTGDSIEARMRHQTDMAVSEADVALLL 89 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 39/180 (21%), Positives = 82/180 (45%), Gaps = 29/180 (16%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+L N L +D + G TRD + ++ + G +K+ DTAG+R+ Sbjct: 197 MAIVGRPNVGKSTLGNQLLGQDRLLTGPEAGLTRDAIAVEWEHRGRRMKLVDTAGLRKKA 256 Query: 282 ---DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPKNI-----DFIFIGTKSD 330 D +EK + T + +++++L+ + I K++++ + + + K D Sbjct: 257 QIYDAIEKLSVGNTIETIRMSEVVVLVMDAAAILDKQDLTIARMVVEEGRALVLAINKWD 316 Query: 331 LYSTYTEEYDHL------------------ISSFTGEGLEELINKIKSILSNKFKKLPFS 372 + L +S+ TG+G+E L++ + +N +++P + Sbjct: 317 VVDDPQTALKRLKDRLETSLPQAKGVTTVTLSALTGKGIERLMDGVLDTWTNWNRRIPTA 376 >gi|317453521|emb|CBL87870.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|242255944|gb|ACS88956.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702523|emb|CAL88451.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702497|emb|CAL88439.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122700661|emb|CAL87919.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|292806560|gb|ADE42410.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|268608007|ref|ZP_06141738.1| small GTP-binding protein [Ruminococcus flavefaciens FD-1] Length = 442 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 36/89 (40%), Positives = 56/89 (62%), Gaps = 5/89 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRE 279 K+ ++G NAGKSSL N +A ++ IV+DI GTTRD T+ + +G V I DTAGIR+ Sbjct: 179 KVAVIGKPNAGKSSLINKIAGEERVIVSDIAGTTRDSTDTVIENEQGKFVFI-DTAGIRK 237 Query: 280 TDDIVEK---EGIKRTFLEVENADLILLL 305 + EK + R ++ V+ AD+ +++ Sbjct: 238 KSKVTEKIEHYSVLRAYMAVDRADVCVIM 266 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 53/88 (60%), Gaps = 1/88 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + ++G N GKS+LFN L + ++IV D PG TRD + + G + DT GI ++ Sbjct: 6 VAVVGRPNVGKSTLFNKLIGQRLSIVEDTPGVTRDRIYSKCEWRGKEFMVVDTGGIEPDS 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308 DD++ + +++ L +E AD+I+ + +I Sbjct: 66 DDVILSQMRRQSELAIEKADVIVFVTDI 93 >gi|167031915|ref|YP_001667146.1| GTP-binding protein EngA [Pseudomonas putida GB-1] gi|189037155|sp|B0KPJ1|DER_PSEPG RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|166858403|gb|ABY96810.1| small GTP-binding protein [Pseudomonas putida GB-1] Length = 487 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 55/92 (59%), Gaps = 3/92 (3%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 ++G KI I+G N GKS+L N + ++ +V D PGTTRD + I + +G DTAG Sbjct: 190 KDGIKIAIIGRPNVGKSTLVNRMLGEERVVVYDEPGTTRDSIYIPFERDGEKYTFIDTAG 249 Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLL 305 +R+ I VEK + +T +++A++++ + Sbjct: 250 VRKRGKIHEEVEKFSVVKTLQAIKDANVVIFV 281 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS++FN L K AIV D+ G TRD D +G + DT GI + Sbjct: 5 IALVGRPNVGKSTMFNRLTKTRDAIVGDLSGLTRDRQYGDATWQGRSFILIDTGGITGDE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++++ +++ + +E AD +L L Sbjct: 65 VGMDEKMAEQSLMAIEEADYVLFL 88 >gi|122702425|emb|CAL88403.1| GTPase [Helicobacter pylori] gi|122702533|emb|CAL88456.1| GTPase [Helicobacter pylori] gi|122702693|emb|CAL88536.1| GTPase [Helicobacter pylori] gi|292806584|gb|ADE42422.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|93004286|gb|ABE97063.1| YphC [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|296314652|ref|ZP_06864593.1| ribosome-associated GTPase EngA [Neisseria polysaccharea ATCC 43768] gi|296838560|gb|EFH22498.1| ribosome-associated GTPase EngA [Neisseria polysaccharea ATCC 43768] Length = 485 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 34/96 (35%), Positives = 59/96 (61%), Gaps = 5/96 (5%) Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---E 279 ++G N GKS+L NA+ ++ I D+ GTTRD + ID + EG I DTAG+R + Sbjct: 179 AVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSIHIDFEREGKPFTIIDTAGVRRRGK 238 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D+ VEK + + VE A++ +L+ ++++++I+ Sbjct: 239 VDEAVEKFSVIKAMQAVEAANVAVLV--LDAQQDIA 272 Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280 I ++G N GKS+LFN L + A+V D+PG TRD + + DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGFEPVV 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 D + E K+T V+ AD ++ L Sbjct: 65 DSGILHEMAKQTLQAVDEADAVVFL 89 >gi|156603663|ref|XP_001618879.1| hypothetical protein NEMVEDRAFT_v1g153067 [Nematostella vectensis] gi|156200746|gb|EDO26779.1| predicted protein [Nematostella vectensis] Length = 304 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G NAGKSS NAL +D IVT+I GTTRD + + G+ + DTAGIR+ Sbjct: 46 RFAVVGRPNAGKSSFINALIGEDRNIVTNIAGTTRDSIDTKYNRFGFDFNLVDTAGIRKK 105 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E + R +E +D+I+L+ Sbjct: 106 SKVKEDLEFYSVMRAVRTIEYSDVIILM 133 >gi|122702737|emb|CAL88558.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702259|emb|CAL88320.1| GTPase [Helicobacter pylori] gi|122702335|emb|CAL88358.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ KE + +DLIL + Sbjct: 69 ALLSKEIKAFNLKAAQMSDLILYV 92 >gi|332305588|ref|YP_004433439.1| ribosome-associated GTPase EngA [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172917|gb|AEE22171.1| ribosome-associated GTPase EngA [Glaciecola agarilytica 4H-3-7+YE-5] Length = 482 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/101 (34%), Positives = 61/101 (60%), Gaps = 3/101 (2%) Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267 ++ +L +++ + K+ I+G N GKS+L N + ++ +V D PGTTRD + I ++ +G Sbjct: 183 AEKQLEKLLASPIKLAIVGKPNVGKSTLTNRILGEERVVVYDQPGTTRDSIFIPMERDGR 242 Query: 268 LVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305 + DTAG+R I VEK I +T +E A+++LL+ Sbjct: 243 EYVLIDTAGVRRRRSISEAVEKFSIVKTLQAIEEANVVLLV 283 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 45/84 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD + EG + DT GI + Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQANYEGLQFIVVDTGGISGDE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ ++ + ++ AD++L L Sbjct: 65 QGIDMAMANQSLMAIDEADVVLFL 88 >gi|317453517|emb|CBL87868.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|292806626|gb|ADE42443.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|292806518|gb|ADE42389.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 39/96 (40%), Positives = 57/96 (59%), Gaps = 4/96 (4%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEI 314 ++ KE + +DLIL + K I S ++I Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDI 104 >gi|291533878|emb|CBL06991.1| ribosome-associated GTPase EngA [Megamonas hypermegale ART12/1] Length = 401 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I ++G N GKSSL NAL ++ IV+D+ GTTRD + D + DTAG+R Sbjct: 137 RIAVIGRPNVGKSSLVNALLGQERVIVSDVAGTTRDAIDTKFDDGNTHFTLIDTAGMRRK 196 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 I +E+ + R+ V+ AD++L++ Sbjct: 197 GKIDMPIERYSVMRSLRAVDRADVVLMV 224 >gi|289449698|ref|YP_003474787.1| ribosome-associated GTPase EngA [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184245|gb|ADC90670.1| ribosome-associated GTPase EngA [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 441 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 54/90 (60%), Gaps = 1/90 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + ++G N GKS+ FN LA + ++IV D PG TRD + +++ G + DT GI T Sbjct: 6 VAVVGRPNVGKSTFFNFLAGERISIVDDTPGVTRDRIYAEVEWLGRKFSLIDTGGIEPRT 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310 DD++ ++ + L +E AD+IL + ++ + Sbjct: 66 DDVLLQQMRIQAELAIETADVILFMVDLKA 95 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/88 (42%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI ++G NAGKSSL N L ++ +IV+ I GTTRD L L E + DTAG+R+ Sbjct: 179 KICLIGKPNAGKSSLTNRLLGQNRSIVSSISGTTRDSLDTPLTNEFGNYVLIDTAGLRKK 238 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLL 305 DD VE+ + R +E +D+ L+L Sbjct: 239 SRIDDQVERYSMIRALAAIERSDVCLIL 266 >gi|242255904|gb|ACS88936.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|255693537|ref|ZP_05417212.1| ribosome-associated GTPase EngA [Bacteroides finegoldii DSM 17565] gi|260620675|gb|EEX43546.1| ribosome-associated GTPase EngA [Bacteroides finegoldii DSM 17565] Length = 437 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 37/91 (40%), Positives = 51/91 (56%), Gaps = 1/91 (1%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277 G + I+G N GKS+LFN L K AIV + GTTRD + G + DT G + Sbjct: 2 GNLVAIVGRPNVGKSTLFNRLTKTRQAIVNEAAGTTRDRQYGKSEWLGREFSVVDTGGWV 61 Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEI 308 +DDI E+E K+ L VE AD+IL + ++ Sbjct: 62 VNSDDIFEEEIRKQVLLAVEEADVILFVVDV 92 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G NAGKSS+ NA +D IVT+I GTTRD + + G+ + DTAGIR+ Sbjct: 177 RFAVVGRPNAGKSSIVNAFIGEDRNIVTEIAGTTRDSIYTRYNKFGFDFYLVDTAGIRKK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E + R+ +E +D+ +L+ Sbjct: 237 SKVNEDLEYYSVIRSIRAIEGSDVCILM 264 >gi|122702763|emb|CAL88571.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702573|emb|CAL88476.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702315|emb|CAL88348.1| GTPase [Helicobacter pylori] gi|122702337|emb|CAL88359.1| GTPase [Helicobacter pylori] Length = 168 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 36/84 (42%), Positives = 50/84 (59%), Gaps = 1/84 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LAK+ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 8 IAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 66 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + KE + +DLIL + Sbjct: 67 AFLSKEIKAFNLKAAQMSDLILYV 90 >gi|122702291|emb|CAL88336.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|317452815|emb|CBL87843.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 49/82 (59%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAR-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|313668681|ref|YP_004048965.1| GTP-binding protein [Neisseria lactamica ST-640] gi|313006143|emb|CBN87604.1| putative GTP-binding protein [Neisseria lactamica 020-06] Length = 485 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 34/96 (35%), Positives = 59/96 (61%), Gaps = 5/96 (5%) Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---E 279 ++G N GKS+L NA+ ++ I D+ GTTRD + ID + EG I DTAG+R + Sbjct: 179 AVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSIHIDFEREGKPFTIIDTAGVRRRGK 238 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D+ VEK + + VE A++ +L+ ++++++I+ Sbjct: 239 VDEAVEKFSVIKAMQAVEAANVAVLV--LDAQQDIA 272 Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280 I ++G N GKS+LFN L + A+V D+PG TRD + + DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGFEPVV 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 D + E K+T V+ AD ++ L Sbjct: 65 DSGILHEMAKQTLQAVDEADAVVFL 89 >gi|242255900|gb|ACS88934.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702407|emb|CAL88394.1| GTPase [Helicobacter pylori] Length = 168 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 36/84 (42%), Positives = 50/84 (59%), Gaps = 1/84 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LAK+ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 8 IAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 66 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + KE + +DLIL + Sbjct: 67 AFLSKEIKAFNLKAAQMSDLILYV 90 >gi|122701341|emb|CAL88060.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122700791|emb|CAL87984.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 39/96 (40%), Positives = 57/96 (59%), Gaps = 4/96 (4%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEI 314 ++ KE + +DLIL + K I S ++I Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDI 104 >gi|104780244|ref|YP_606742.1| GTP-binding protein EngA [Pseudomonas entomophila L48] gi|166225841|sp|Q1IEH7|DER_PSEE4 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|95109231|emb|CAK13928.1| GTP-binding protein EngA [Pseudomonas entomophila L48] Length = 488 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 55/92 (59%), Gaps = 3/92 (3%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 ++G KI I+G N GKS+L N + ++ +V D PGTTRD + I + +G DTAG Sbjct: 190 KDGIKIAIIGRPNVGKSTLVNRMLGEERVVVYDQPGTTRDSIYIPFERDGEKYTFIDTAG 249 Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLL 305 +R+ I VEK + +T +++A++++ + Sbjct: 250 VRKRGKIHEEVEKFSVVKTLQAIKDANVVIFV 281 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS++FN L K AIV D+ G TRD D +G + DT GI + Sbjct: 5 IALVGRPNVGKSTMFNRLTKTRDAIVGDLSGLTRDRQYGDASWQGRSYILIDTGGITGDE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++++ +++ + +E AD +L L Sbjct: 65 VGMDEKMAEQSLMAIEEADYVLFL 88 >gi|18075555|emb|CAD11173.1| GTP-binding protein [Helicobacter pylori] gi|122702821|emb|CAL88600.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKTLNLKAAQMSDLIL 90 >gi|26987593|ref|NP_743018.1| GTP-binding protein EngA [Pseudomonas putida KT2440] gi|37999649|sp|Q88PJ3|DER_PSEPK RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|24982270|gb|AAN66482.1|AE016277_1 GTP-binding protein EngA [Pseudomonas putida KT2440] Length = 487 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 55/92 (59%), Gaps = 3/92 (3%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 ++G KI I+G N GKS+L N + ++ +V D PGTTRD + I + +G DTAG Sbjct: 190 KDGIKIAIIGRPNVGKSTLVNRMLGEERVVVYDEPGTTRDSIYIPFERDGEKYTFIDTAG 249 Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLL 305 +R+ I VEK + +T +++A++++ + Sbjct: 250 VRKRGKIHEEVEKFSVVKTLQAIKDANVVIFV 281 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS++FN L K AIV D+ G TRD D +G + DT GI + Sbjct: 5 IALVGRPNVGKSTMFNRLTKTRDAIVGDLSGLTRDRQYGDASWQGRSFILIDTGGITGDE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++++ +++ + +E AD +L L Sbjct: 65 VGMDEKMAEQSLMAIEEADYVLFL 88 >gi|317484901|ref|ZP_07943790.1| ribosome-associated GTPase EngA [Bilophila wadsworthia 3_1_6] gi|316923839|gb|EFV45036.1| ribosome-associated GTPase EngA [Bilophila wadsworthia 3_1_6] Length = 452 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 34/91 (37%), Positives = 50/91 (54%), Gaps = 3/91 (3%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 N ++ +LG NAGKSSL NA+ +D IV+D+ GTTRD + I +G + DTAG+ Sbjct: 187 NVLRLAMLGRPNAGKSSLVNAMIGEDRMIVSDVAGTTRDSVDIPFVSDGRACEFVDTAGV 246 Query: 278 RET---DDIVEKEGIKRTFLEVENADLILLL 305 R D VE+ + + AD+ L + Sbjct: 247 RRRTRITDTVERFSVNSSLKTTTKADVTLYV 277 Score = 43.9 bits (102), Expect = 0.045, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 1/58 (1%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-IDLDLEGYLVKISDTAGI 277 KI +LG N GKS+LFN L + + AI D PG TRD + + G + DT G+ Sbjct: 4 KIALLGRPNVGKSTLFNRLIRSNRAITHDRPGVTRDRMEGVVRSRSGRSFTLIDTGGV 61 >gi|122702133|emb|CAL88257.1| GTPase [Helicobacter pylori] gi|122702141|emb|CAL88261.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|47459318|ref|YP_016180.1| GTP-binding protein EngA [Mycoplasma mobile 163K] gi|47458648|gb|AAT27969.1| predicted GTPase protein [Mycoplasma mobile 163K] Length = 432 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 74/149 (49%), Gaps = 15/149 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS++FN + K A+V DIPG TRD L +G ++ DT GI+ D Sbjct: 5 IAIVGKPNVGKSTIFNRIIGKRQAVVADIPGVTRDRLYEKATWDGKTFEVVDTGGIQIED 64 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD--- 330 +K+ + + +E AD+I+ + E S+ +I N F+ K + Sbjct: 65 VPFQKQIKIQAMIAIEEADVIIFVVEGRSELSKDDYLIVDILRKSNKQIFFVANKLEDNH 124 Query: 331 --LYSTYTEEYDHL--ISSFTGEGLEELI 355 +S Y +D + IS+ GEG+ +L+ Sbjct: 125 EFDHSLYKLGFDKIFKISALHGEGIGDLL 153 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/90 (41%), Positives = 55/90 (61%), Gaps = 5/90 (5%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-- 277 +KI I+G NAGKSSL N + ++ +IV+ IPGTT D ++ + +KI DTAGI Sbjct: 171 FKIAIIGKPNAGKSSLLNTILDEERSIVSPIPGTTHDPISESFYYKDEKLKIIDTAGIIK 230 Query: 278 --RETDDIVEKEGIKRTFLEVENADLILLL 305 R DDI + + R F +E ++L+LL+ Sbjct: 231 KSRMADDI-DFYILNRAFKTIEESNLVLLI 259 >gi|47097577|ref|ZP_00235108.1| GTPase family protein [Listeria monocytogenes str. 1/2a F6854] gi|47014052|gb|EAL05054.1| GTPase family protein [Listeria monocytogenes str. 1/2a F6854] Length = 400 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 37/115 (32%), Positives = 63/115 (54%), Gaps = 5/115 (4%) Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262 + +H + + E + K ++G N GKSS+ NAL +D IV+DI GTTRD + Sbjct: 123 VRAHFPKEEEEEYPDDTVKFSLIGRPNVGKSSILNALLGEDRVIVSDIAGTTRDAIDTTY 182 Query: 263 DLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEI 314 +G + DTAG+R+ + EK + R +E +D++L++ IN+++ I Sbjct: 183 TFDGQDYVMIDTAGMRKRGKVYESTEKYSVLRAMRAIERSDVVLVV--INAEEGI 235 >gi|298368463|ref|ZP_06979781.1| ribosome-associated GTPase EngA [Neisseria sp. oral taxon 014 str. F0314] gi|298282466|gb|EFI23953.1| ribosome-associated GTPase EngA [Neisseria sp. oral taxon 014 str. F0314] Length = 492 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 34/96 (35%), Positives = 59/96 (61%), Gaps = 5/96 (5%) Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---E 279 ++G N GKS+L NA+ ++ I D+ GTTRD + ID + EG I DTAG+R + Sbjct: 186 AVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSIHIDFEREGKPFTIIDTAGVRRRGK 245 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D+ VEK + + VE A++ +L+ ++++++I+ Sbjct: 246 VDEAVEKFSVIKAMQAVEAANVAVLV--LDAQQDIA 279 Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280 I ++G N GKS+LFN L + A+V D+PG TRD + + DT G Sbjct: 12 IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKIGSKPYLVIDTGGFEPVV 71 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 D + E K+T V+ AD ++ L Sbjct: 72 DSGILHEMAKQTLQAVDEADAVVFL 96 >gi|296532289|ref|ZP_06895028.1| ribosome-associated GTPase EngA [Roseomonas cervicalis ATCC 49957] gi|296267365|gb|EFH13251.1| ribosome-associated GTPase EngA [Roseomonas cervicalis ATCC 49957] Length = 445 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/86 (40%), Positives = 48/86 (55%), Gaps = 1/86 (1%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I I+G N GKS+LFN LA + +AIV D PG TRD + L G V + DTAG+ E Sbjct: 4 RIAIIGRPNVGKSTLFNRLAGRKLAIVDDTPGVTRDRKETEARLGGRAVLLLDTAGLEEA 63 Query: 281 -DDIVEKEGIKRTFLEVENADLILLL 305 D V + + +ADL+L + Sbjct: 64 PPDTVAGRMRASSEAAIRDADLVLFV 89 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 46/181 (25%), Positives = 84/181 (46%), Gaps = 32/181 (17%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRE 279 ++ I+G NAGKS+L NAL ++ I PG TRD + ++ D G V++ DTAG+R+ Sbjct: 179 RLAIVGRPNAGKSTLLNALLGEERMITGPEPGLTRDAVAVEWTDETGGKVRLVDTAGMRK 238 Query: 280 TDDIV---EKEGIKRTFLEVENADLILLLKEIN-------------SKKE-----ISFPK 318 I+ E+ + T ++ A+ +L+ + N +++E I+F K Sbjct: 239 KARIIEGLEQMSVAATIAALKEAEAAILVLDANLGMDEQDLRIARLAEREGRAVIIAFNK 298 Query: 319 NIDFI--FIGTKSDLYSTYTEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKL 369 D + + L T L +S+ TG G+E L+ ++ + +++ Sbjct: 299 -WDAVEDRAACRRKLDDVLTASLAQLKGVEVVTLSAMTGRGVERLMPAVRQTVERWNRRI 357 Query: 370 P 370 P Sbjct: 358 P 358 >gi|122702683|emb|CAL88531.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702743|emb|CAL88561.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702453|emb|CAL88417.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702287|emb|CAL88334.1| GTPase [Helicobacter pylori] gi|122702327|emb|CAL88354.1| GTPase [Helicobacter pylori] Length = 168 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 40/96 (41%), Positives = 56/96 (58%), Gaps = 4/96 (4%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LAK+ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 8 IAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 66 Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEI 314 + KE + +DLIL + K I S ++I Sbjct: 67 AFLSKEIKAFNLKAAQMSDLILYVVDGKSIPSDEDI 102 >gi|122702297|emb|CAL88339.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122700831|emb|CAL88004.1| GTPase [Helicobacter pylori] gi|122700869|emb|CAL88023.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRRIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|4467663|emb|CAB37783.1| GTP-binding protein homologue [Helicobacter pylori] gi|4467673|emb|CAB37788.1| GTP-binding protein homologue [Helicobacter pylori] gi|122700741|emb|CAL87959.1| GTPase [Helicobacter pylori] gi|292806526|gb|ADE42393.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806604|gb|ADE42432.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|319899216|ref|YP_004159309.1| GTP-binding protein [Bartonella clarridgeiae 73] gi|319403180|emb|CBI76739.1| GTP-binding protein [Bartonella clarridgeiae 73] Length = 478 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 78/158 (49%), Gaps = 24/158 (15%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS+LFN L + +A+V + PG TRD L+ + DTAG+ E D Sbjct: 5 IAIVGRPNVGKSTLFNRLVGQKLALVDNQPGVTRDRRIHSAKLQDLHFDVIDTAGLEEAD 64 Query: 282 D-IVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF-----------IFIGTKS 329 + +E +T + ++ ADLIL + +++K I+ ++DF + + KS Sbjct: 65 NHTLEGRMRSQTKIAIDEADLILFV--LDAKSGIT-SSDLDFASLIRKSGKPIVLVSNKS 121 Query: 330 DLYSTYTEEYDHL---------ISSFTGEGLEELINKI 358 + + EYD IS+ G+GL +L + I Sbjct: 122 ESKAAIAGEYDAWSLRLGKPCSISAEHGQGLSDLRDAI 159 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 38/66 (57%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I I+G N GKS+L N++ ++ + G TRD +++D + +K+ DTAG+R Sbjct: 209 RIAIVGRPNTGKSTLINSMLGQNRLLTGPEAGITRDSISVDWEWNNRRIKLFDTAGLRRK 268 Query: 281 DDIVEK 286 + EK Sbjct: 269 SKVQEK 274 >gi|122700715|emb|CAL87946.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|270264725|ref|ZP_06192990.1| GTP-binding protein EngA [Serratia odorifera 4Rx13] gi|270041408|gb|EFA14507.1| GTP-binding protein EngA [Serratia odorifera 4Rx13] Length = 493 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 33/84 (39%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L A+V D PG TRD ++EG I DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGNEFIIVDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 D VE ++ L +E AD++L + Sbjct: 65 DGVETRMAGQSLLAIEEADIVLFM 88 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 61/98 (62%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I + + + DTAG+R+ Sbjct: 207 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMVRDEREYVLIDTAGVRKR 266 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + VEK + +T +E+A+++LL+ +++++ IS Sbjct: 267 GKVTETVEKFSVIKTLQAIEDANVVLLV--VDAREGIS 302 >gi|242255916|gb|ACS88942.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|261379855|ref|ZP_05984428.1| ribosome-associated GTPase EngA [Neisseria subflava NJ9703] gi|284797551|gb|EFC52898.1| ribosome-associated GTPase EngA [Neisseria subflava NJ9703] Length = 485 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 34/96 (35%), Positives = 59/96 (61%), Gaps = 5/96 (5%) Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---E 279 ++G N GKS+L NA+ ++ I D+ GTTRD + ID + EG I DTAG+R + Sbjct: 179 AVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSIHIDFEREGKPFTIIDTAGVRRRGK 238 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D+ VEK + + VE A++ +L+ ++++++I+ Sbjct: 239 VDEAVEKFSVIKAMQAVEAANVAVLV--LDAQQDIA 272 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280 I ++G N GKS+LFN L + A+V D+PG TRD + + DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGFEPVV 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 D + E K+T V+ AD ++ L Sbjct: 65 DSGILHEMAKQTLQAVDEADAVVFL 89 >gi|18075559|emb|CAD11175.1| GTP-binding protein [Helicobacter pylori] gi|122702347|emb|CAL88364.1| GTPase [Helicobacter pylori] gi|122702819|emb|CAL88599.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|99905863|gb|ABF68626.1| YphC [Helicobacter pylori] gi|122702231|emb|CAL88306.1| GTPase [Helicobacter pylori] gi|242255926|gb|ACS88947.1| GTPase [Helicobacter pylori] gi|292806516|gb|ADE42388.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|325127951|gb|EGC50852.1| GTP-binding protein [Neisseria meningitidis N1568] gi|325134015|gb|EGC56670.1| GTP-binding protein [Neisseria meningitidis M13399] gi|325202361|gb|ADY97815.1| GTP-binding protein [Neisseria meningitidis M01-240149] gi|325206317|gb|ADZ01770.1| GTP-binding protein [Neisseria meningitidis M04-240196] gi|325207887|gb|ADZ03339.1| GTP-binding protein [Neisseria meningitidis NZ-05/33] Length = 485 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 34/96 (35%), Positives = 59/96 (61%), Gaps = 5/96 (5%) Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---E 279 ++G N GKS+L NA+ ++ I D+ GTTRD + ID + EG I DTAG+R + Sbjct: 179 AVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSIHIDFEREGKPFTIIDTAGVRRRGK 238 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D+ VEK + + VE A++ +L+ ++++++I+ Sbjct: 239 VDEAVEKFSVIKAMQAVEAANVAVLV--LDAQQDIA 272 Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280 I ++G N GKS+LFN L + A+V D+PG TRD + + DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGFEPVV 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 D + E K+T V+ AD ++ L Sbjct: 65 DSGILHEMAKQTLQAVDEADAVVFL 89 >gi|292806482|gb|ADE42371.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|257460130|ref|ZP_05625234.1| ribosome-associated GTPase EngA [Campylobacter gracilis RM3268] gi|257442571|gb|EEV17710.1| ribosome-associated GTPase EngA [Campylobacter gracilis RM3268] Length = 461 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 31/86 (36%), Positives = 53/86 (61%), Gaps = 1/86 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 ++I+G N GKSSLFN LA +AI +D+ GTTRD + ++ V++ D+ G+ +T Sbjct: 4 LIIIGRPNVGKSSLFNRLAGARIAITSDVAGTTRDTNRAEAEIFDRRVRVIDSGGLDDTS 63 Query: 282 DIVEKEGIKRTFLEVENADLILLLKE 307 ++ + K T E ++ADLI+ + + Sbjct: 64 ELFARVQAK-TLSEAKSADLIIFMTD 88 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 48/84 (57%), Gaps = 2/84 (2%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 I+G N GKSSL NAL ++V+D GTT D + + G ++ DTAGIR I Sbjct: 203 IIGRVNVGKSSLLNALVGSQRSVVSDYAGTTIDPVNESTEFGGRTLEFIDTAGIRRRGKI 262 Query: 284 --VEKEGIKRTFLEVENADLILLL 305 +E+ + RT ++N+D+ LL+ Sbjct: 263 EGIERFALNRTEKILQNSDITLLV 286 >gi|254804723|ref|YP_003082944.1| putative GTP-binding protein [Neisseria meningitidis alpha14] gi|254668265|emb|CBA05137.1| putative GTP-binding protein [Neisseria meningitidis alpha14] gi|254673335|emb|CBA08527.1| putative GTP-binding protein [Neisseria meningitidis alpha275] gi|325132265|gb|EGC54958.1| GTP-binding protein [Neisseria meningitidis M6190] gi|325137764|gb|EGC60339.1| GTP-binding protein [Neisseria meningitidis ES14902] Length = 485 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 34/96 (35%), Positives = 59/96 (61%), Gaps = 5/96 (5%) Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---E 279 ++G N GKS+L NA+ ++ I D+ GTTRD + ID + EG I DTAG+R + Sbjct: 179 AVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSIHIDFEREGKPFTIIDTAGVRRRGK 238 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D+ VEK + + VE A++ +L+ ++++++I+ Sbjct: 239 VDEAVEKFSVIKAMQAVEAANVAVLV--LDAQQDIA 272 Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280 I ++G N GKS+LFN L + A+V D+PG TRD + + DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGFEPVV 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 D + E K+T V+ AD ++ L Sbjct: 65 DSGILHEMAKQTLQAVDEADAVVFL 89 >gi|269214116|ref|ZP_05983629.2| ribosome-associated GTPase EngA [Neisseria cinerea ATCC 14685] gi|269144512|gb|EEZ70930.1| ribosome-associated GTPase EngA [Neisseria cinerea ATCC 14685] Length = 537 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 33/86 (38%), Positives = 51/86 (59%), Gaps = 3/86 (3%) Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---E 279 ++G N GKS+L NA+ ++ I D+ GTTRD + ID + EG I DTAG+R + Sbjct: 231 AVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSIHIDFEREGKPFTIIDTAGVRRRGK 290 Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305 D+ VEK + + VE A++ +L+ Sbjct: 291 VDEAVEKFSVIKAMQAVEAANVAVLV 316 Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280 I ++G N GKS+LFN L + A+V D+PG TRD + + DT G Sbjct: 57 IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGFEPVV 116 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 D + E K+T V+ AD ++ L Sbjct: 117 DSGILHEMAKQTLQAVDEADAVVFL 141 >gi|122702293|emb|CAL88337.1| GTPase [Helicobacter pylori] gi|122702303|emb|CAL88342.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122701625|emb|CAL88202.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702205|emb|CAL88293.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKAINLKAAQMSDLIL 90 >gi|122700787|emb|CAL87982.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|121634628|ref|YP_974873.1| GTP-binding protein EngA [Neisseria meningitidis FAM18] gi|166225830|sp|A1KT93|DER_NEIMF RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|120866334|emb|CAM10076.1| putative GTP-binding protein [Neisseria meningitidis FAM18] gi|261392799|emb|CAX50375.1| putative GTP-binding protein EngA [Neisseria meningitidis 8013] gi|325142105|gb|EGC64531.1| GTP-binding protein [Neisseria meningitidis 961-5945] gi|325198052|gb|ADY93508.1| GTP-binding protein [Neisseria meningitidis G2136] gi|325203920|gb|ADY99373.1| GTP-binding protein [Neisseria meningitidis M01-240355] Length = 485 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 34/96 (35%), Positives = 59/96 (61%), Gaps = 5/96 (5%) Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---E 279 ++G N GKS+L NA+ ++ I D+ GTTRD + ID + EG I DTAG+R + Sbjct: 179 AVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSIHIDFEREGKPFTIIDTAGVRRRGK 238 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D+ VEK + + VE A++ +L+ ++++++I+ Sbjct: 239 VDEAVEKFSVIKAMQAVEAANVAVLV--LDAQQDIA 272 Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280 I ++G N GKS+LFN L + A+V D+PG TRD + + DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGFEPVV 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 D + E K+T V+ AD ++ L Sbjct: 65 DSGILHEMAKQTLQAVDEADAVVFL 89 >gi|15676748|ref|NP_273893.1| GTP-binding protein EngA [Neisseria meningitidis MC58] gi|26006741|sp|Q9JZY1|DER_NEIMB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|7226088|gb|AAF41263.1| essential GTPase [Neisseria meningitidis MC58] gi|316984259|gb|EFV63235.1| small GTP-binding domain protein [Neisseria meningitidis H44/76] gi|325140003|gb|EGC62532.1| GTP-binding protein [Neisseria meningitidis CU385] gi|325200471|gb|ADY95926.1| GTP-binding protein [Neisseria meningitidis H44/76] Length = 485 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 34/96 (35%), Positives = 59/96 (61%), Gaps = 5/96 (5%) Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---E 279 ++G N GKS+L NA+ ++ I D+ GTTRD + ID + EG I DTAG+R + Sbjct: 179 AVIGRPNVGKSTLVNAILGEERVITFDMAGTTRDSIHIDFEREGKPFTIIDTAGVRRRGK 238 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D+ VEK + + VE A++ +L+ ++++++I+ Sbjct: 239 VDEAVEKFSVIKAMQAVEAANVAVLV--LDAQQDIA 272 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280 I ++G N GKS+LFN L + A+V D+PG TRD + + DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGFEPVV 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 D + E K+T V+ AD ++ L Sbjct: 65 DSGILHEMAKQTLQAVDEADAVVFL 89 >gi|326797802|ref|YP_004315621.1| GTP-binding protein engA [Sphingobacterium sp. 21] gi|326548566|gb|ADZ76951.1| GTP-binding protein engA [Sphingobacterium sp. 21] Length = 433 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K I+G N GKSS NAL K+ IVT I GTTRD + I + G+ + DTAG+R Sbjct: 175 KYAIVGRPNVGKSSFINALIGKERNIVTPIAGTTRDSIQIHYNQFGHEFMLIDTAGLRRK 234 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E + RT +E AD+++L+ Sbjct: 235 TKVKENIEFYSVMRTIKALEEADVVILM 262 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 1/88 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 I I+G N GKS+L+N L + AIV D+ G TRD + G + DT G + + Sbjct: 5 IAIVGRPNVGKSTLYNRLTESRKAIVDDMSGVTRDRHYGQAEWVGKTFTVIDTGGYVHGS 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308 +DI E ++ + +E A +IL + ++ Sbjct: 65 EDIFEAAIREQVLIAIEEASVILFMVDV 92 >gi|317011055|gb|ADU84802.1| GTP-binding protein EngA [Helicobacter pylori SouthAfrica7] Length = 460 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 36/82 (43%), Positives = 49/82 (59%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LAK+ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 9 IAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 67 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 + KE + +DLIL Sbjct: 68 AFLSKEIKAFNLKAAQMSDLIL 89 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 51/178 (28%), Positives = 87/178 (48%), Gaps = 25/178 (14%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSL NAL KK+ +IV+ + GTT D + + + + DTAGIR Sbjct: 200 QVGIIGRVNVGKSSLLNALTKKERSIVSSVAGTTIDPIDETILIGDQKICFVDTAGIRHR 259 Query: 281 DDI--VEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330 I +EK ++RT +E + + LL+ ++++ ++ ++ I I K D Sbjct: 260 GKILGIEKYALERTQKALEKSHIALLVLDVSAPFVELDEKISSLADKHSLGIILILNKWD 319 Query: 331 L-YSTYTE------------EYDHLI--SSFTGEGLEELINKIKSILSNKFKKLPFSI 373 + Y+ Y E EY +I S +EE+ +KI + K++P S+ Sbjct: 320 IRYAPYEEIMAVLKRKFRFLEYAPVITTSCLKTRHIEEIKHKIIEVYECFSKRIPTSL 377 >gi|122700811|emb|CAL87994.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRRIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122700705|emb|CAL87941.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|157371840|ref|YP_001479829.1| GTP-binding protein EngA [Serratia proteamaculans 568] gi|166920103|sp|A8GHW1|DER_SERP5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|157323604|gb|ABV42701.1| small GTP-binding protein [Serratia proteamaculans 568] Length = 494 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 33/84 (39%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L A+V D PG TRD ++EG I DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGNEFIIVDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 D VE ++ L +E AD++L + Sbjct: 65 DGVETRMAGQSLLAIEEADIVLFM 88 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/98 (34%), Positives = 61/98 (62%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + +D +V D+PGTTRD + I + + + DTAG+R+ Sbjct: 209 KLAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMVRDEREYVLIDTAGVRKR 268 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + VEK + +T +E+A+++LL+ +++++ IS Sbjct: 269 GKVTETVEKFSVIKTLQAIEDANVVLLV--VDAREGIS 304 >gi|313497226|gb|ADR58592.1| EngA [Pseudomonas putida BIRD-1] Length = 487 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 55/92 (59%), Gaps = 3/92 (3%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 ++G KI I+G N GKS+L N + ++ +V D PGTTRD + I + +G DTAG Sbjct: 190 KDGIKIAIIGRPNVGKSTLVNRMLGEERVVVYDEPGTTRDSIYIPFERDGEKYTFIDTAG 249 Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLL 305 +R+ I VEK + +T +++A++++ + Sbjct: 250 VRKRGKIHEEVEKFSVVKTLQAIKDANVVIFV 281 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS++FN L K AIV D+ G TRD D +G + DT GI + Sbjct: 5 IALVGRPNVGKSTMFNRLTKTRDAIVGDLSGLTRDRQYGDASWQGRSFILIDTGGITGDE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++++ +++ + +E AD +L L Sbjct: 65 VGMDEKMAEQSLMAIEEADYVLFL 88 >gi|292806454|gb|ADE42357.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|225010004|ref|ZP_03700476.1| small GTP-binding protein [Flavobacteria bacterium MS024-3C] gi|225005483|gb|EEG43433.1| small GTP-binding protein [Flavobacteria bacterium MS024-3C] Length = 436 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G NAGKSS NAL +D IVTDI GTTRD + + G+ + DTAGIR Sbjct: 177 RFAVVGRPNAGKSSFINALIGEDRYIVTDIAGTTRDSIDTRYNRFGFEFNLVDTAGIRRK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E + R+ +E++D+ +L+ Sbjct: 237 AKVREDLEFYSVMRSVRAIEHSDVCILI 264 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 1/90 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 + I+G N GKS+ FN L ++ AIV + G TRD D G + DT G + + Sbjct: 5 VAIVGRPNVGKSTFFNRLIQRREAIVDAVSGVTRDRHYGKSDWNGREFSVIDTGGYVLGS 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310 DD+ EKE K+ L ++ AD I+ + ++ + Sbjct: 65 DDVFEKEIDKQVELAIDEADAIIFMVDVET 94 >gi|122701509|emb|CAL88144.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFVGTTRDINKRKIALNGHKVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702377|emb|CAL88379.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ KE + +DLIL + Sbjct: 69 ALLSKEIKAFNLKAAQMSDLILYV 92 >gi|122702309|emb|CAL88345.1| GTPase [Helicobacter pylori] gi|122702409|emb|CAL88395.1| GTPase [Helicobacter pylori] Length = 168 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 36/82 (43%), Positives = 49/82 (59%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LAK+ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 8 IAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 66 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 + KE + +DLIL Sbjct: 67 AFLSKEIKSFNLKAAQMSDLIL 88 >gi|309379417|emb|CBX21984.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 485 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 34/96 (35%), Positives = 59/96 (61%), Gaps = 5/96 (5%) Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---E 279 ++G N GKS+L NA+ ++ I D+ GTTRD + ID + EG I DTAG+R + Sbjct: 179 AVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSIHIDFEREGKPFTIIDTAGVRRRGK 238 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D+ VEK + + VE A++ +L+ ++++++I+ Sbjct: 239 VDEAVEKFSVIKAMQAVEAANVAVLV--LDAQQDIA 272 Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280 I ++G N GKS+LFN L + A+V D+PG TRD + + DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGFEPVV 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 D + E K+T V+ AD ++ L Sbjct: 65 DSGILHEMAKQTLQAVDEADAVVFL 89 >gi|292806492|gb|ADE42376.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|288958550|ref|YP_003448891.1| GTP-binding protein [Azospirillum sp. B510] gi|288910858|dbj|BAI72347.1| GTP-binding protein [Azospirillum sp. B510] Length = 464 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 33/87 (37%), Positives = 51/87 (58%), Gaps = 1/87 (1%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 + +V++G N GKS+LFN LA K +A+V D PG TRD + + G + DTAG+ + Sbjct: 3 FTVVLVGRPNVGKSTLFNRLAGKKLALVDDTPGVTRDWRSAPAHVGGLSFTVVDTAGLED 62 Query: 280 -TDDIVEKEGIKRTFLEVENADLILLL 305 TDD +E ++T + AD+ L + Sbjct: 63 VTDDSLEARMRRQTEQALARADVALFI 89 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 +I I+G N GKS+L N+L ++ + G TRD +T+D + K+ DTAG+R Sbjct: 199 QIAIVGRPNVGKSTLLNSLLGEERVLTGPEAGMTRDAITVDWEWRDRRFKLVDTAGMRRR 258 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305 D+ VEK + + + A++++L+ Sbjct: 259 ARVDEKVEKLAVADSLRVIRMANVVVLV 286 >gi|212710611|ref|ZP_03318739.1| hypothetical protein PROVALCAL_01677 [Providencia alcalifaciens DSM 30120] gi|212686692|gb|EEB46220.1| hypothetical protein PROVALCAL_01677 [Providencia alcalifaciens DSM 30120] Length = 492 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 62/98 (63%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + +D +V D+PGTTRD + I ++ + + DTAG+R+ Sbjct: 207 KLAIVGRPNVGKSTLTNRILGEDRVVVFDMPGTTRDSIYIPMERDEREYILIDTAGVRKR 266 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + VEK + +T +E+A+++LL+ I++++ IS Sbjct: 267 GKVTETVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 302 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG+ I DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGHEFIIIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE ++ +E AD++L + Sbjct: 65 EGVETHMAAQSLQAIEEADVVLFM 88 >gi|122702301|emb|CAL88341.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122700595|emb|CAL87886.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKAINLKAAQMSDLIL 90 >gi|323703070|ref|ZP_08114725.1| ribosome-associated GTPase EngA [Desulfotomaculum nigrificans DSM 574] gi|323531964|gb|EGB21848.1| ribosome-associated GTPase EngA [Desulfotomaculum nigrificans DSM 574] Length = 442 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I ++G N GKSSL NA+ ++ IV++IPGTTRD + + G I DTAG+R Sbjct: 178 RIAVIGRPNVGKSSLVNAILGEERVIVSNIPGTTRDAIDSPFERNGKSYVIVDTAGMRRR 237 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + I E+ + R ++ D+ L+L Sbjct: 238 NRIDLPAERYSVVRALRAIDRCDVALML 265 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS LFN + +AIV D+PG TRD L D + +G + DT G+ + Sbjct: 6 VAIVGRPNVGKSMLFNRIVGSRIAIVEDMPGVTRDRLYQDAEWQGREFTLVDTGGLDFAE 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 D++ + K+ L + AD ++ + Sbjct: 66 DVITSQIRKQAELAMREADAVIFV 89 >gi|292806664|gb|ADE42462.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKAINLKAAQMSDLIL 90 >gi|122702323|emb|CAL88352.1| GTPase [Helicobacter pylori] gi|122702361|emb|CAL88371.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|109947730|ref|YP_664958.1| GTP-binding protein EngA [Helicobacter acinonychis str. Sheeba] gi|123362586|sp|Q17WL7|DER_HELAH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|109714951|emb|CAJ99959.1| GTP-binding protein [Helicobacter acinonychis str. Sheeba] Length = 462 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 41/102 (40%), Positives = 58/102 (56%), Gaps = 4/102 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LAK+ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 11 IAILGQPNVGKSSLFNRLAKERIAITSDFVGTTRDINKRKITLNGHEVELLDTGGMAK-D 69 Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI 320 + KE + +DLIL + K I S ++I + I Sbjct: 70 AFLSKEIKAFNLKAAQMSDLILYVVDGKSIPSDEDIKLFREI 111 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 53/185 (28%), Positives = 90/185 (48%), Gaps = 29/185 (15%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273 EII+ G I+G N GKSSL N L +K+ +IV+ + GTT D + + ++ + D Sbjct: 199 EIIQVG----IIGRVNVGKSSLLNVLTQKERSIVSSVAGTTIDPIDETILVKNQKICFVD 254 Query: 274 TAGIRETDDI--VEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFI 323 TAGIR I +EK ++RT +E + + LL+ ++++ ++ ++ I Sbjct: 255 TAGIRHKGKILGIEKYALERTQKALEKSHIALLVLDVSAPFVELDEKISSLADKHSLGII 314 Query: 324 FIGTKSDL-YSTYTE------------EYDHLI--SSFTGEGLEELINKIKSILSNKFKK 368 I K D+ Y+ Y E EY +I S +EE+ +KI + K+ Sbjct: 315 LILNKWDIRYAPYEEIMATLKRKFRFLEYAPVITTSCLKTRHIEEIKHKIIEVYECFSKR 374 Query: 369 LPFSI 373 +P S+ Sbjct: 375 IPTSL 379 >gi|317453529|emb|CBL87874.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGRPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|242255962|gb|ACS88965.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKAINLKAAQMSDLIL 90 >gi|225849583|ref|YP_002729817.1| GTP-binding protein EngA [Persephonella marina EX-H1] gi|254783162|sp|C0QT02|DER_PERMH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|225645742|gb|ACO03928.1| ribosome-associated GTPase EngA [Persephonella marina EX-H1] Length = 447 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 34/86 (39%), Positives = 53/86 (61%), Gaps = 3/86 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G NAGKSSL NA+ ++ A+V++IPGTTRDV+ + + DTAG+R+ Sbjct: 184 KVAIVGKPNAGKSSLLNAILGEERAVVSEIPGTTRDVVDTLFEWKDQKFLFLDTAGLRKK 243 Query: 281 DDI---VEKEGIKRTFLEVENADLIL 303 + +E I RT ++ AD+I+ Sbjct: 244 SKVDYGIEFFSIGRTLDAIKKADVIV 269 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/62 (45%), Positives = 37/62 (59%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 Y++ I+G N GKSSLFN + K AIV DIPG TRD + + G ++ DT G E Sbjct: 2 YRVAIVGRPNVGKSSLFNRIIGKRKAIVEDIPGVTRDRIVSTAEWRGVTFEVVDTGGYIE 61 Query: 280 TD 281 +D Sbjct: 62 SD 63 >gi|122702461|emb|CAL88421.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702255|emb|CAL88318.1| GTPase [Helicobacter pylori] Length = 168 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 36/82 (43%), Positives = 49/82 (59%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LAK+ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 8 IAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 66 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 + KE + +DLIL Sbjct: 67 AFLSKEIKAFNLKAAQMSDLIL 88 >gi|331701406|ref|YP_004398365.1| GTP-binding protein engA [Lactobacillus buchneri NRRL B-30929] gi|329128749|gb|AEB73302.1| GTP-binding protein engA [Lactobacillus buchneri NRRL B-30929] Length = 435 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 3/85 (3%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 I+G N GKSSL NA+ +D IV+DI GTTRD + + +G + DTAGIR+ + Sbjct: 179 IIGRPNVGKSSLVNAILGEDRVIVSDIAGTTRDAIDTRFEADGIKFTMVDTAGIRKRGKV 238 Query: 284 ---VEKEGIKRTFLEVENADLILLL 305 E+ + R ++ +D+IL + Sbjct: 239 YENTERYSVMRAMKAIDQSDVILFV 263 Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust. Identities = 24/84 (28%), Positives = 44/84 (52%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + +G N GKS++FN +A ++IV D PG TRD + + + DT GI+ +D Sbjct: 6 VAFIGRPNVGKSTIFNRIAGDRISIVEDTPGVTRDRIYSHGEWLATKFAMIDTGGIQISD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + + ++ AD+I+ + Sbjct: 66 APFATQIKSQAEIAIDEADVIVFI 89 >gi|325265768|ref|ZP_08132455.1| ribosome-associated GTPase EngA [Kingella denitrificans ATCC 33394] gi|324982751|gb|EGC18376.1| ribosome-associated GTPase EngA [Kingella denitrificans ATCC 33394] Length = 489 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 34/96 (35%), Positives = 59/96 (61%), Gaps = 5/96 (5%) Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---E 279 ++G N GKS+L NA+ ++ I D+ GTTRD + ID + EG I DTAG+R + Sbjct: 179 AVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSIHIDFEREGKPFTIIDTAGVRRRGK 238 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D+ VEK + + VE A++ +L+ ++++++I+ Sbjct: 239 VDEAVEKFSVIKAMQAVEAANVAVLV--LDAQQDIA 272 Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280 I ++G N GKS+LFN L + A+V D+PG TRD + + DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVVDTGGFEPVV 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 D + E ++T ++ AD ++ L Sbjct: 65 DSGILHEMARQTLQAIDEADAVIFL 89 >gi|167768008|ref|ZP_02440061.1| hypothetical protein CLOSS21_02551 [Clostridium sp. SS2/1] gi|317498398|ref|ZP_07956693.1| ribosome-associated GTPase EngA [Lachnospiraceae bacterium 5_1_63FAA] gi|167710337|gb|EDS20916.1| hypothetical protein CLOSS21_02551 [Clostridium sp. SS2/1] gi|291561010|emb|CBL39810.1| ribosome-associated GTPase EngA [butyrate-producing bacterium SSC/2] gi|316894292|gb|EFV16479.1| ribosome-associated GTPase EngA [Lachnospiraceae bacterium 5_1_63FAA] Length = 440 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 52/88 (59%), Gaps = 1/88 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 I I+G N GKS+LFNALA + ++IV D PG TRD + D+ Y + DT GI ++ Sbjct: 6 IAIVGRPNVGKSTLFNALAGEKISIVKDTPGVTRDRIYADVTWLNYQFTLIDTGGIEPDS 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308 D++ + + +E AD+I+ L ++ Sbjct: 66 GDLLLSHMRGQAEIAMETADVIIFLTDV 93 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G NAGKSSL N L +D IV+DI GTTRD + + G DTAG+R+ Sbjct: 179 RVAIIGKPNAGKSSLINKLLGEDRLIVSDIAGTTRDAIDTTVKRNGKEYVFIDTAGLRKK 238 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E+ + RT VE D+ +L+ Sbjct: 239 ARVKEDIERYSVIRTVAAVERCDVAILV 266 >gi|18075601|emb|CAD11196.1| GTP-binding protein [Helicobacter pylori] gi|122700745|emb|CAL87961.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|18310737|ref|NP_562671.1| GTP-binding protein EngA [Clostridium perfringens str. 13] gi|110798819|ref|YP_696441.1| GTP-binding protein EngA [Clostridium perfringens ATCC 13124] gi|110803315|ref|YP_699041.1| GTP-binding protein EngA [Clostridium perfringens SM101] gi|168207282|ref|ZP_02633287.1| putative GTP-binding protein Era [Clostridium perfringens E str. JGS1987] gi|168210612|ref|ZP_02636237.1| putative GTP-binding protein Era [Clostridium perfringens B str. ATCC 3626] gi|168214232|ref|ZP_02639857.1| putative GTP-binding protein Era [Clostridium perfringens CPE str. F4969] gi|168217042|ref|ZP_02642667.1| putative GTP-binding protein Era [Clostridium perfringens NCTC 8239] gi|169342731|ref|ZP_02863772.1| putative GTP-binding protein Era [Clostridium perfringens C str. JGS1495] gi|182625851|ref|ZP_02953617.1| putative GTP-binding protein Era [Clostridium perfringens D str. JGS1721] gi|26006720|sp|Q8XJK1|DER_CLOPE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|123148666|sp|Q0TPJ9|DER_CLOP1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|123341699|sp|Q0SS66|DER_CLOPS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|18145418|dbj|BAB81461.1| probable GTP binding protein [Clostridium perfringens str. 13] gi|110673466|gb|ABG82453.1| ribosome-associated GTPase EngA [Clostridium perfringens ATCC 13124] gi|110683816|gb|ABG87186.1| ribosome-associated GTPase EngA [Clostridium perfringens SM101] gi|169299237|gb|EDS81307.1| putative GTP-binding protein Era [Clostridium perfringens C str. JGS1495] gi|170661368|gb|EDT14051.1| putative GTP-binding protein Era [Clostridium perfringens E str. JGS1987] gi|170711316|gb|EDT23498.1| putative GTP-binding protein Era [Clostridium perfringens B str. ATCC 3626] gi|170714259|gb|EDT26441.1| putative GTP-binding protein Era [Clostridium perfringens CPE str. F4969] gi|177908885|gb|EDT71377.1| putative GTP-binding protein Era [Clostridium perfringens D str. JGS1721] gi|182380862|gb|EDT78341.1| putative GTP-binding protein Era [Clostridium perfringens NCTC 8239] Length = 438 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 53/88 (60%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I ++G N GKSSL N L ++ IV+++PGTTRD + L+ E + DTAG+R Sbjct: 178 RIAMIGKPNVGKSSLINRLLGEERVIVSNVPGTTRDSIDSYLETEDGKFILVDTAGLRRK 237 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E+ + RT+ +E AD+ +L+ Sbjct: 238 SKVKEEIERYSVIRTYAAIEKADVAILV 265 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 51/85 (60%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + ++G N GKS+LFN LA K ++IV D PG TRD + + + + DT GI E+ Sbjct: 6 VAMVGRPNVGKSTLFNKLAGKRISIVQDTPGVTRDRVYAESEWLNRKFTMIDTGGIEPES 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 DI+ K+ ++ + +E AD+I+ + Sbjct: 66 SDIIVKQMRRQAQIAIEMADVIVFV 90 >gi|218767960|ref|YP_002342472.1| GTP-binding protein EngA [Neisseria meningitidis Z2491] gi|26006740|sp|Q9JV01|DER_NEIMA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|121051968|emb|CAM08277.1| putative GTP-binding protein [Neisseria meningitidis Z2491] Length = 485 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 34/96 (35%), Positives = 59/96 (61%), Gaps = 5/96 (5%) Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---E 279 ++G N GKS+L NA+ ++ I D+ GTTRD + ID + EG I DTAG+R + Sbjct: 179 AVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSIHIDFEREGKPFTIIDTAGVRRRGK 238 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D+ VEK + + VE A++ +L+ ++++++I+ Sbjct: 239 VDEAVEKFSVIKAMQAVEAANVAVLV--LDAQQDIA 272 Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280 I ++G N GKS+LFN L + A+V D+PG TRD + + DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGFEPVV 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 D + E K+T V+ AD ++ L Sbjct: 65 DSGILHEMAKQTLQAVDEADAVVFL 89 >gi|332534677|ref|ZP_08410508.1| GTP-binding protein EngA [Pseudoalteromonas haloplanktis ANT/505] gi|332035889|gb|EGI72371.1| GTP-binding protein EngA [Pseudoalteromonas haloplanktis ANT/505] Length = 476 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 59/98 (60%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 K+ I+G N GKS+L N + +D IV D+PGTTRD + I + + DTAG+R Sbjct: 191 KLAIIGRPNVGKSTLTNRILGEDRVIVYDMPGTTRDSIYIPMTRNDKEYVLIDTAGVRKR 250 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + D+VEK + +T +E+ +++LL+ ++++ IS Sbjct: 251 KKVSDVVEKFSVIKTLQAIEDCNVVLLV--VDARDGIS 286 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 29/75 (38%), Positives = 43/75 (57%) Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIK 290 GKS+LFN L + A+V D PG TRD +GY + DT GI +++ +E E Sbjct: 2 GKSTLFNRLTRTRDALVADFPGLTRDRKYGQASYDGYEFIVVDTGGIDGSEEGIEIEMAD 61 Query: 291 RTFLEVENADLILLL 305 ++ L +E AD++L L Sbjct: 62 QSLLAIEEADIVLFL 76 >gi|291166767|gb|EFE28813.1| ribosome-associated GTPase EngA [Filifactor alocis ATCC 35896] Length = 437 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 49/179 (27%), Positives = 86/179 (48%), Gaps = 29/179 (16%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G NAGKSS+ N + ++ IV+ I GTTRD + ++ DTAGIR+ Sbjct: 177 KVAIVGKPNAGKSSIINRILGEERVIVSPIAGTTRDAIDTYFHVKDQEYLFIDTAGIRKK 236 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEIN---SKKE-----ISFPKNIDFIFIGTKS 329 D+ +EK + R++ VE AD++L++ + N S+++ ++ + + K Sbjct: 237 SKIDENIEKYSVIRSYAAVERADVVLIVIDANIGISEQDSKIAGLAHNAGKSTVIVVNKW 296 Query: 330 DLY-------STYTEEYDH-----------LISSFTGEGLEELINKIKSILSNKFKKLP 370 DL TYTE +S+ TG+ ++I I ++ K++P Sbjct: 297 DLVEKDNKSIQTYTESIRQELPFMSYAPIIFVSTTTGQRFGKIIESINAVYQESQKRVP 355 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RET 280 + I+G N GKS+LFN L VAIV D PG TRD + + + + DT GI ++ Sbjct: 5 VAIVGRPNVGKSTLFNKLVGSRVAIVEDTPGVTRDRIYGEAEWLTDYFTVIDTGGIDNDS 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 DDI+ + ++ L ++ AD+IL + Sbjct: 65 DDIIPAQMRRQAELAMDTADVILFV 89 >gi|282890013|ref|ZP_06298547.1| hypothetical protein pah_c009o032 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500105|gb|EFB42390.1| hypothetical protein pah_c009o032 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 493 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 33/86 (38%), Positives = 49/86 (56%), Gaps = 1/86 (1%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ ++G N GKS+LFN + K +AIV + G TRD L + DL G ++ DT GI Sbjct: 11 KLALVGRPNVGKSALFNKICGKKIAIVDEAEGVTRDRLYAEADLFGRHFQVIDTGGINPR 70 Query: 281 DDIVEKEGIKRTF-LEVENADLILLL 305 D E +KR + +E AD I+++ Sbjct: 71 SDAPFNEEVKRQAEIAIEEADTIVMV 96 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 51/177 (28%), Positives = 84/177 (47%), Gaps = 31/177 (17%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET- 280 I I+G N GKSSL N L + IV+ IPGTTRD + + + + DTAGIR Sbjct: 185 IAIIGRPNVGKSSLINYLLDEQRCIVSPIPGTTRDSVDVSFTHNEHAYTLIDTAGIRRKH 244 Query: 281 --DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP-KNI---------DFIFIGTK 328 ++V+K RT + AD+ LL+ ++S++ I+ K I I + K Sbjct: 245 SEHEVVDKFAAIRTERAIARADICLLV--LDSQQGITVQEKRIANLIEEAGKGCILLFNK 302 Query: 329 SDLYSTYTEEY------------DH----LISSFTGEGLEELINKIKSILSNKFKKL 369 DL + E+ +H +S+ TG +E++ +I+++ N K++ Sbjct: 303 WDLVKGFRMEHCLKEIESEASFLNHCPKIFMSAKTGRNVEKIFEEIQTVHENSQKRI 359 >gi|242255964|gb|ACS88966.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRRIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|261400171|ref|ZP_05986296.1| ribosome-associated GTPase EngA [Neisseria lactamica ATCC 23970] gi|269210170|gb|EEZ76625.1| ribosome-associated GTPase EngA [Neisseria lactamica ATCC 23970] Length = 485 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 34/96 (35%), Positives = 59/96 (61%), Gaps = 5/96 (5%) Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---E 279 ++G N GKS+L NA+ ++ I D+ GTTRD + ID + EG I DTAG+R + Sbjct: 179 AVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSIHIDFEREGKPFTIIDTAGVRRRGK 238 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D+ VEK + + VE A++ +L+ ++++++I+ Sbjct: 239 VDEAVEKFSVIKAMQAVEAANVAVLV--LDAQQDIA 272 Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280 I ++G N GKS+LFN L + A+V D+PG TRD + + DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGFEPVV 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 D + E K+T V+ AD ++ L Sbjct: 65 DSGILHEMAKQTLQAVDEADAVVFL 89 >gi|122702735|emb|CAL88557.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|292806692|gb|ADE42476.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLNAAQMSDLIL 90 >gi|282880854|ref|ZP_06289547.1| ribosome-associated GTPase EngA [Prevotella timonensis CRIS 5C-B1] gi|281305236|gb|EFA97303.1| ribosome-associated GTPase EngA [Prevotella timonensis CRIS 5C-B1] Length = 437 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G N GKSS+ NA +D IVT+I GTTRD + D G+ + DTAGIR Sbjct: 177 RFAVVGRPNVGKSSIINAFIGEDRNIVTEIAGTTRDSIYTRYDKFGFDFYLVDTAGIRRK 236 Query: 281 DDIVEK---EGIKRTFLEVENADLILLL 305 + + E + R+ +EN+D+ +L+ Sbjct: 237 NKVTEDLEFYSVMRSIHSIENSDVCILM 264 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 1/90 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 + I+G N GKS+LFN L + AIV+D GTTRD G + DT G + + Sbjct: 5 VAIVGRPNVGKSTLFNRLTQSRKAIVSDTAGTTRDRQYGKCSWNGREFSVVDTGGWVVNS 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310 DDI E K+ + E ADL+L + ++ + Sbjct: 65 DDIFEDAIRKQVVVATEEADLVLFVVDVKN 94 >gi|319763709|ref|YP_004127646.1| ribosome-associated gtpase enga [Alicycliphilus denitrificans BC] gi|330824028|ref|YP_004387331.1| ribosome-associated GTPase EngA [Alicycliphilus denitrificans K601] gi|317118270|gb|ADV00759.1| ribosome-associated GTPase EngA [Alicycliphilus denitrificans BC] gi|329309400|gb|AEB83815.1| ribosome-associated GTPase EngA [Alicycliphilus denitrificans K601] Length = 447 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 29/91 (31%), Positives = 53/91 (58%), Gaps = 3/91 (3%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 N ++ + G N GKS+L N ++ + D+PGTTRD +++ + G ++ DTAG+ Sbjct: 178 NVIRLAVAGRPNVGKSTLINTWLGEERLVAFDMPGTTRDAISVPFERNGQKFELIDTAGL 237 Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLL 305 R + +EK + +T +E+A+++LLL Sbjct: 238 RRKGKVFEAIEKFSVVKTLQAIESANVVLLL 268 Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust. Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 1/88 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 I ++G N GKS+LFN L K AIV D G TRD + + + DT G + Sbjct: 5 IALVGRPNVGKSTLFNRLTKSRDAIVADFAGLTRDRHYGNGRQGKHEFIVIDTGGFEPDA 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308 + +E K+T V AD+++ + ++ Sbjct: 65 SSGIYREMAKQTQQAVAEADVVIFVVDV 92 >gi|292806444|gb|ADE42352.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKAINLKAAQMSDLIL 90 >gi|293394879|ref|ZP_06639169.1| ribosome-associated GTPase EngA [Serratia odorifera DSM 4582] gi|291422630|gb|EFE95869.1| ribosome-associated GTPase EngA [Serratia odorifera DSM 4582] Length = 497 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 33/84 (39%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L A+V D PG TRD ++EG I DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGNEFIIIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 D VE ++ L +E AD++L + Sbjct: 65 DGVETRMAGQSLLAIEEADIVLFM 88 Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 61/98 (62%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I + + + DTAG+R+ Sbjct: 210 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMVRDEREYVLIDTAGVRKR 269 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + VEK + +T +E+A+++LL+ +++++ IS Sbjct: 270 GKVTETVEKFSVIKTLQAIEDANVVLLV--VDAREGIS 305 >gi|212690523|ref|ZP_03298651.1| hypothetical protein BACDOR_00005 [Bacteroides dorei DSM 17855] gi|212666872|gb|EEB27444.1| hypothetical protein BACDOR_00005 [Bacteroides dorei DSM 17855] Length = 455 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 53/88 (60%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G NAGKSS+ NA +D IVT+I GTTRD + + G+ + DTAGIR+ Sbjct: 195 RFAVVGRPNAGKSSIINAFIGEDRNIVTEIAGTTRDSIYTRYEKFGFDFYLVDTAGIRKK 254 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + + +E + R+ +EN+D+ +L+ Sbjct: 255 NKVNEDLEYYSVIRSIRSIENSDVCILM 282 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/114 (33%), Positives = 62/114 (54%), Gaps = 7/114 (6%) Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255 I ++K D S ++ K+G ++ I+G N GKS+LFN L K AIV + GTTR Sbjct: 3 IKWIKIDCDSRKTRKKMGNLV------AIVGRPNVGKSTLFNRLTKTRQAIVNEQAGTTR 56 Query: 256 DVLTIDLDLEGYLVKISDTAG-IRETDDIVEKEGIKRTFLEVENADLILLLKEI 308 D + G+ + DT G + + D+ E+E K+ L ++ AD+IL + ++ Sbjct: 57 DRQYGKSEWVGHEFSVVDTGGWVVNSGDVFEEEIRKQVSLAIDEADVILFVVDV 110 >gi|122702493|emb|CAL88437.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 34/82 (41%), Positives = 51/82 (62%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN L+++ +AI +D+ GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLSRERIAITSDLAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 TLLSKEIKALNLKAAQMSDLIL 90 >gi|304436527|ref|ZP_07396500.1| ribosome-associated GTPase EngA [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370470|gb|EFM24122.1| ribosome-associated GTPase EngA [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 442 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 35/86 (40%), Positives = 52/86 (60%), Gaps = 3/86 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--E 279 + ++G N GKS+LFN + KK V+IV D+PG TRD + +D + + I DT GI E Sbjct: 6 VAVVGRPNVGKSTLFNQIGKKRVSIVDDMPGVTRDRIYLDAEWLNHEFTIIDTGGIEFDE 65 Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305 +D I+ + + L +E AD+IL L Sbjct: 66 SDHIL-RSMRSQAELAMEEADVILFL 90 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 3/87 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKSSL N L ++ IV+D+PGTTRD + +G + DTAG+R Sbjct: 179 IAVVGRPNVGKSSLVNRLLGEERVIVSDVPGTTRDAIDTHFTKDGAKYLLIDTAGMRRKG 238 Query: 282 DI---VEKEGIKRTFLEVENADLILLL 305 I VE+ + R+ ++ A ++L++ Sbjct: 239 KITLPVERYSVMRSLRAIDRAGVVLMV 265 >gi|294140150|ref|YP_003556128.1| GTP-binding protein EngA [Shewanella violacea DSS12] gi|293326619|dbj|BAJ01350.1| GTP-binding protein EngA [Shewanella violacea DSS12] Length = 490 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 34/98 (34%), Positives = 60/98 (61%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D PGTTRD + I ++ EG + DTAG+R Sbjct: 201 KLAIIGKPNVGKSTLINRILGEERVVVYDSPGTTRDSIYIPMEREGREYVLIDTAGVRRR 260 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + VEK + +T +E+ +++LL+ I++++ I+ Sbjct: 261 SKVHETVEKFSVIKTLKAIEDCNVVLLI--IDAREGIA 296 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 49/89 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD L GY + DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRASLSGYEFIVVDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310 + +E +++ +E AD++L L + + Sbjct: 65 EGIEVHMAEQSLAAIEEADVVLFLTDARA 93 >gi|237708020|ref|ZP_04538501.1| GTP-binding protein EngA [Bacteroides sp. 9_1_42FAA] gi|265754193|ref|ZP_06089382.1| ribosome-associated GTPase EngA [Bacteroides sp. 3_1_33FAA] gi|229458006|gb|EEO63727.1| GTP-binding protein EngA [Bacteroides sp. 9_1_42FAA] gi|263234902|gb|EEZ20457.1| ribosome-associated GTPase EngA [Bacteroides sp. 3_1_33FAA] Length = 437 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 53/88 (60%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G NAGKSS+ NA +D IVT+I GTTRD + + G+ + DTAGIR+ Sbjct: 177 RFAVVGRPNAGKSSIINAFIGEDRNIVTEIAGTTRDSIYTRYEKFGFDFYLVDTAGIRKK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + + +E + R+ +EN+D+ +L+ Sbjct: 237 NKVNEDLEYYSVIRSIRSIENSDVCILM 264 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 1/91 (1%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277 G + I+G N GKS+LFN L K AIV + GTTRD + G+ + DT G + Sbjct: 2 GNLVAIVGRPNVGKSTLFNRLTKTRQAIVNEQAGTTRDRQYGKSEWVGHEFSVVDTGGWV 61 Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEI 308 + D+ E+E K+ L ++ AD+IL + ++ Sbjct: 62 VNSGDVFEEEIRKQVSLAIDEADVILFVVDV 92 >gi|83647146|ref|YP_435581.1| GTP-binding protein EngA [Hahella chejuensis KCTC 2396] gi|123531965|sp|Q2SDW8|DER_HAHCH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|83635189|gb|ABC31156.1| predicted GTPase [Hahella chejuensis KCTC 2396] Length = 472 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 34/91 (37%), Positives = 54/91 (59%), Gaps = 3/91 (3%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 +G +I I+G N GKS+L N L +D +V D PGTTRD + I + G + DTAG+ Sbjct: 174 SGIRIGIIGRPNVGKSTLVNRLLGEDRVVVFDQPGTTRDSVYIPYERLGERYTLIDTAGV 233 Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLL 305 R ++ VEK I +T +++A +++L+ Sbjct: 234 RRRKNVSEAVEKFSIVKTLQAIKDAHVVVLV 264 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN + + AIV ++PG TRD + +LEG + DT GI + Sbjct: 5 IALVGRPNVGKSTLFNRMTRSRDAIVANLPGLTRDRKYGEGELEGKHYIVVDTGGITGEE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ ++F + AD++L + Sbjct: 65 QGIDAAMAGQSFTAMNEADVVLFV 88 >gi|292806550|gb|ADE42405.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806552|gb|ADE42406.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|294670887|ref|ZP_06735743.1| hypothetical protein NEIELOOT_02591 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307374|gb|EFE48617.1| hypothetical protein NEIELOOT_02591 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 491 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 34/96 (35%), Positives = 59/96 (61%), Gaps = 5/96 (5%) Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---E 279 ++G N GKS+L NA+ ++ I D+ GTTRD + ID + EG I DTAG+R + Sbjct: 179 AVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSIHIDFEREGKPFTIIDTAGVRRRGK 238 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D+ VEK + + VE A++ +L+ ++++++I+ Sbjct: 239 VDEAVEKFSVIKAMQAVEAANVAVLV--LDAQQDIA 272 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 41/155 (26%), Positives = 65/155 (41%), Gaps = 18/155 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280 I ++G N GKS+LFN L + A+V D+PG TRD L + DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGRLGSKPYLVIDTGGFEPVV 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL----------KEINSKKEISFPKNIDFIFIGTKSD 330 D + E K+T V+ AD ++ L +I + + P+ + + Sbjct: 65 DSGILHEMAKQTLQAVDEADAVVFLVDARTGLTPQDKIIADRLRQSPRPVYLAVNKGEGG 124 Query: 331 LYSTYTEEY-------DHLISSFTGEGLEELINKI 358 + E+ H+IS G+G+ LI K+ Sbjct: 125 RHDVLAAEFYELALGEPHVISGAHGDGVYHLIEKV 159 >gi|289435286|ref|YP_003465158.1| GTPase family protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171530|emb|CBH28074.1| GTPase family protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313632616|gb|EFR99602.1| ribosome-associated GTPase EngA [Listeria seeligeri FSL N1-067] gi|313637164|gb|EFS02696.1| ribosome-associated GTPase EngA [Listeria seeligeri FSL S4-171] Length = 436 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 37/115 (32%), Positives = 63/115 (54%), Gaps = 5/115 (4%) Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262 + +H + + E + K ++G N GKSS+ NAL +D IV+DI GTTRD + Sbjct: 159 VRAHFPKEEEEEYPDDTVKFSLIGRPNVGKSSILNALLGEDRVIVSDIAGTTRDAIDTTY 218 Query: 263 DLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEI 314 +G + DTAG+R+ + EK + R +E +D++L++ IN+++ I Sbjct: 219 TFDGQDYVMIDTAGMRKRGKVYESTEKYSVLRAMRAIERSDVVLVV--INAEEGI 271 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN + + V+IV D+PG TRD + + G I DT GI +D Sbjct: 6 VAIVGRPNVGKSTIFNRIVGERVSIVEDVPGVTRDRIYNSAEWLGKDFNIIDTGGIDLSD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + ++ + + ++ AD+I+ + Sbjct: 66 EPFLEQIRAQAEIAIDEADVIIFI 89 >gi|150003043|ref|YP_001297787.1| GTP-binding protein EngA [Bacteroides vulgatus ATCC 8482] gi|254883681|ref|ZP_05256391.1| GTP-binding protein engA [Bacteroides sp. 4_3_47FAA] gi|294775667|ref|ZP_06741175.1| ribosome-associated GTPase EngA [Bacteroides vulgatus PC510] gi|319642181|ref|ZP_07996841.1| GTP-binding protein engA [Bacteroides sp. 3_1_40A] gi|166224306|sp|A6KXK1|DER_BACV8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|149931467|gb|ABR38165.1| putative phosphoglycerate dehydrogenase [Bacteroides vulgatus ATCC 8482] gi|254836474|gb|EET16783.1| GTP-binding protein engA [Bacteroides sp. 4_3_47FAA] gi|294450511|gb|EFG19003.1| ribosome-associated GTPase EngA [Bacteroides vulgatus PC510] gi|317386167|gb|EFV67086.1| GTP-binding protein engA [Bacteroides sp. 3_1_40A] Length = 437 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 53/88 (60%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G NAGKSS+ NA +D IVT+I GTTRD + + G+ + DTAGIR+ Sbjct: 177 RFAVVGRPNAGKSSIINAFIGEDRNIVTEIAGTTRDSIYTRYEKFGFDFYLVDTAGIRKK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + + +E + R+ +EN+D+ +L+ Sbjct: 237 NKVSEDLEYYSVIRSIRSIENSDVCILM 264 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/91 (37%), Positives = 52/91 (57%), Gaps = 1/91 (1%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277 G + I+G N GKS+LFN L K AIV + GTTRD + G+ + DT G + Sbjct: 2 GNLVAIVGRPNVGKSTLFNRLTKTRQAIVNEQAGTTRDRQYGKSEWVGHEFSVVDTGGWV 61 Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEI 308 +DD+ E+E K+ L ++ AD+IL + ++ Sbjct: 62 VNSDDVFEEEIRKQVSLAIDEADVILFVVDV 92 >gi|122702405|emb|CAL88393.1| GTPase [Helicobacter pylori] gi|122702411|emb|CAL88396.1| GTPase [Helicobacter pylori] gi|122702413|emb|CAL88397.1| GTPase [Helicobacter pylori] gi|122702415|emb|CAL88398.1| GTPase [Helicobacter pylori] gi|122702419|emb|CAL88400.1| GTPase [Helicobacter pylori] Length = 168 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 36/82 (43%), Positives = 49/82 (59%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LAK+ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 8 IAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 66 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 + KE + +DLIL Sbjct: 67 AFLSKEIKAFNLKAAQMSDLIL 88 >gi|15834701|ref|NP_296460.1| GTP-binding protein EngA [Chlamydia muridarum Nigg] gi|270284867|ref|ZP_06194261.1| GTP-binding protein EngA [Chlamydia muridarum Nigg] gi|301336246|ref|ZP_07224448.1| GTP-binding protein EngA [Chlamydia muridarum MopnTet14] gi|14194736|sp|Q9PLM3|DER_CHLMU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|7190111|gb|AAF38958.1| GTP-binding protein, Era/ThdF family [Chlamydia muridarum Nigg] Length = 490 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 35/89 (39%), Positives = 53/89 (59%), Gaps = 1/89 (1%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RE 279 +I ILG N GKSS+FN L K+ +AIV GTTRD L ++ +V + DT G+ +E Sbjct: 2 RIAILGRPNVGKSSIFNRLCKRSLAIVNAQEGTTRDRLYGEIRAWDSIVHVIDTGGVDQE 61 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEI 308 + D +K+ K+ E A ++LL+ +I Sbjct: 62 STDRFQKQIHKQALAAAEEASVLLLVVDI 90 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/113 (32%), Positives = 59/113 (52%), Gaps = 5/113 (4%) Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266 ++Q I K+ ++GH N GKSS+ NAL K++ I + PGTTRD + + Sbjct: 214 VAQTTTPSISNRPLKVALIGHPNVGKSSIVNALLKEERCITDNSPGTTRDNVDVSYTYND 273 Query: 267 YLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISF 316 DTAG+R+ I VE RT + AD+ LL+ I++ +++S+ Sbjct: 274 KEYVFIDTAGLRKAKSIKNSVEWMSSSRTEKAISRADICLLV--IDATQQLSY 324 >gi|160886572|ref|ZP_02067575.1| hypothetical protein BACOVA_04583 [Bacteroides ovatus ATCC 8483] gi|156108457|gb|EDO10202.1| hypothetical protein BACOVA_04583 [Bacteroides ovatus ATCC 8483] Length = 396 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 81/162 (50%), Gaps = 18/162 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280 I + G N+GKSSL NAL +D A+V+D PGTT D+++ ++++G DT G + Sbjct: 14 IALFGRRNSGKSSLINALTGQDTALVSDTPGTTTDLVSKAMEIQGIGPCLFIDTPGFDDE 73 Query: 281 DDIVEKEGIKRTFLEVENADLILLL---------KEINS---KKEISFPKNIDFIFIGTK 328 ++ E I RT +E D+ LLL KE+ + +K I ++ I I Sbjct: 74 GELGELR-ISRTLKAIEKTDIALLLCGDTTFSHEKEMLTLLKEKNIPVIPVLNKIDIREN 132 Query: 329 SDLYSTYTEE----YDHLISSFTGEGLEELINKIKSILSNKF 366 SD +TY EE LIS+ G+E++ I L + F Sbjct: 133 SDSLATYIEEEYKIRPLLISAKEKTGIEQIRQAILEKLPSDF 174 >gi|122701447|emb|CAL88113.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 34/82 (41%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DL+L Sbjct: 69 ALLSKEIKALNLKAAQMSDLVL 90 >gi|313203779|ref|YP_004042436.1| ribosome-associated GTPase enga [Paludibacter propionicigenes WB4] gi|312443095|gb|ADQ79451.1| ribosome-associated GTPase EngA [Paludibacter propionicigenes WB4] Length = 437 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 49/169 (28%), Positives = 76/169 (44%), Gaps = 24/169 (14%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277 G + I+G N GKS+LFN L K AIV D GTTRD + EG + DT G + Sbjct: 2 GNIVAIVGRPNVGKSTLFNRLTKSRRAIVNDEAGTTRDRQYGKCEWEGREFSVIDTGGWV 61 Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKS 329 + D+ E E + L +E AD+IL L +I + +I + + + K+ Sbjct: 62 INSSDVFEGEIKRHVVLAIEEADVILFLVDIQNGITDYDLEVAQILRGQTKPVMLVSNKA 121 Query: 330 DLYSTYTEEY------------DHLISSFTGEGLEELINKIKSILSNKF 366 D T+ +Y H+IS+ G G + ++K+ + F Sbjct: 122 D---TFEWQYGVAEFYKLGLGEPHMISAINGLGTGDFLDKLLTYFKPDF 167 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G NAGKSS+ NA ++ IVTDI GTTRD + + G+ + DTAGIR+ Sbjct: 177 RFAVVGRPNAGKSSIINAFVGEERTIVTDIAGTTRDSIYTRFNKFGHDFYLVDTAGIRKK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E + R+ +EN D+ +L+ Sbjct: 237 AKVNEDLEYYSVVRSIRAIENCDVCILM 264 >gi|308270408|emb|CBX27020.1| GTP-binding protein engA [uncultured Desulfobacterium sp.] Length = 442 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ ++G N GKSSL N + KD IV+D+PGTTRD + +++G I DTAGIR Sbjct: 176 KVAVIGRPNVGKSSLINRILGKDRHIVSDVPGTTRDAVDSLCEIKGKQYLIIDTAGIRRK 235 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +EK I + ++ D+ L++ Sbjct: 236 SKVSKKIEKFSIIKALKSLDRCDIALII 263 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 3/86 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--E 279 I I+G N GKS+ FN + + AIV D PG TRD + D + DT G + Sbjct: 5 ITIVGRPNVGKSTFFNRVTRSKDAIVDDFPGVTRDCIHRDAVWNDVEFTLVDTGGFAYGD 64 Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305 DDI K ++ +++AD I+++ Sbjct: 65 EDDINSKVRMQ-VKQSIDDADAIIMM 89 >gi|295696375|ref|YP_003589613.1| ribosome-associated GTPase EngA [Bacillus tusciae DSM 2912] gi|295411977|gb|ADG06469.1| ribosome-associated GTPase EngA [Bacillus tusciae DSM 2912] Length = 451 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 35/106 (33%), Positives = 61/106 (57%), Gaps = 5/106 (4%) Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272 GE + ++ ++G N GKSSL N L ++ +V++IPGTTRD + + EG+ + Sbjct: 177 GEPDHDAIRVAVIGRPNVGKSSLVNRLLGEERVLVSEIPGTTRDAVDTLFEREGHSFILI 236 Query: 273 DTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 DTAG+R+ + EK + R ++ +D+ LL+ I+ K+ I+ Sbjct: 237 DTAGLRKRGRVWEDTEKYSVLRALRAIDRSDVCLLV--IDGKQGIA 280 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/97 (34%), Positives = 50/97 (51%), Gaps = 3/97 (3%) Query: 212 LGEIIRN--GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269 +G++++ G + I+G N GKS+LFN + +AIV D PG TRD L G Sbjct: 1 MGKVVKAMPGGLVAIVGRPNVGKSTLFNRIVGGRIAIVEDKPGVTRDRLYALASWNGRGF 60 Query: 270 KISDTAGIR-ETDDIVEKEGIKRTFLEVENADLILLL 305 +I DT G+ D + K + L +E AD ++ L Sbjct: 61 RIIDTGGLDFGGSDAIVKSIRAQVELALEEADAVIFL 97 >gi|122700709|emb|CAL87943.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ KE + +DLIL + Sbjct: 69 ALLSKEIKAINLKAAQMSDLILYV 92 >gi|57505514|ref|ZP_00371441.1| GTP-binding protein, Era/ThdF family [Campylobacter upsaliensis RM3195] gi|57016061|gb|EAL52848.1| GTP-binding protein, Era/ThdF family [Campylobacter upsaliensis RM3195] Length = 457 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 32/85 (37%), Positives = 56/85 (65%), Gaps = 3/85 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I+++G N GKSSLFN +A++ +AI ++I GTTRD I +++ G + D+ G+ E++ Sbjct: 4 IILIGKPNVGKSSLFNRIARQRIAITSEISGTTRDTNKIKVNINGKEALLIDSGGLDESN 63 Query: 282 DIVEKEGIKRTFLE-VENADLILLL 305 ++ + +K+ L +NAD+IL L Sbjct: 64 ELF--KNVKQNSLNAAKNADIILYL 86 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 78/158 (49%), Gaps = 20/158 (12%) Query: 154 LSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLG 213 L LY W++ H + + S EE ++NF ++ + K Sbjct: 149 LDELYA-WLENFLHTSVLKNDEEEQSLEEFLENFDEEKEI-----------------KFK 190 Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273 EI N KI I+G N GKSSL NAL K+ ++V+ I GTT D + + + +++ D Sbjct: 191 EIDENHIKIGIVGRVNVGKSSLLNALVKEQRSVVSSIAGTTIDPVNESVMYKDKVLEFID 250 Query: 274 TAGIRETDDI--VEKEGIKRTFLEVENADLILLLKEIN 309 TAGIR+ I +E+ + RT ++N+ + LL+ + N Sbjct: 251 TAGIRKRGKIQGIERFALNRTEKMLQNSQIALLVLDAN 288 >gi|310642585|ref|YP_003947343.1| gtp-binding protein enga [Paenibacillus polymyxa SC2] gi|309247535|gb|ADO57102.1| GTP-binding protein engA [Paenibacillus polymyxa SC2] Length = 440 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ ++G N GKSSL NA+ ++ IV+DI GTTRD + + +G + DTAG+R+ Sbjct: 178 RVALIGRPNVGKSSLVNAILGEERVIVSDIAGTTRDAIDTPFEKDGQKYVLIDTAGMRKR 237 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + EK + R +E AD++L++ Sbjct: 238 GKVYETTEKYSVMRAMRAIERADVVLVV 265 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 1/87 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS++FN + ++IV D PG TRD + + G I DT GI + Sbjct: 6 VAIVGRPNVGKSTIFNRIIGDRLSIVEDKPGITRDRIYGISEWNGKSFSIIDTGGIEIDG 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE 307 +D++ K + L +E AD+I+ + + Sbjct: 66 EDVILKSIRMQAELAIEEADVIVFMSD 92 >gi|242255924|gb|ACS88946.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQVSDLIL 90 >gi|126640577|ref|YP_001083561.1| GTP-binding protein EngA [Acinetobacter baumannii ATCC 17978] Length = 399 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 50/84 (59%), Gaps = 3/84 (3%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G ++ I+G N GKS+L N L +D + D PGTTRD + I + EG + DTAG+R Sbjct: 106 GLRLAIIGRPNVGKSTLVNRLLGEDRVVAFDQPGTTRDSIYIPFEREGRKYTLIDTAGVR 165 Query: 279 ---ETDDIVEKEGIKRTFLEVENA 299 + D+++EK I +T +++A Sbjct: 166 RKGKVDEMIEKFSIVKTLQAMKDA 189 >gi|122700627|emb|CAL87902.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ KE + +DLIL + Sbjct: 69 ALLSKEIKAFNLKAAQMSDLILYV 92 >gi|88703668|ref|ZP_01101384.1| GTP-binding protein engA [Congregibacter litoralis KT71] gi|88702382|gb|EAQ99485.1| GTP-binding protein engA [Congregibacter litoralis KT71] Length = 495 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 53/90 (58%), Gaps = 3/90 (3%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G ++ I+G N GKS+L N + ++ +V D PGTTRD + I EG + DTAG+R Sbjct: 198 GTRVAIVGRPNVGKSTLVNRILGEERVVVYDQPGTTRDSVYIKFVREGRPYTLIDTAGVR 257 Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLL 305 ++ +EK I +T + +A++++LL Sbjct: 258 RRKNVREAIEKFSIIKTLSAISDANVVVLL 287 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L + A+V ++ G TRD + + + DT G+ + Sbjct: 5 IALVGRPNVGKSTLFNQLTRSRDALVANLSGLTRDRKYGEGRSDDRAFIVIDTGGVSGDE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + ++ +++ L +E AD++LLL Sbjct: 65 EGIDAAMAEQSLLAIEEADIVLLL 88 >gi|308069529|ref|YP_003871134.1| GTP-binding protein engA [Paenibacillus polymyxa E681] gi|305858808|gb|ADM70596.1| GTP-binding protein engA [Paenibacillus polymyxa E681] Length = 440 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ ++G N GKSSL NA+ ++ IV+DI GTTRD + + +G + DTAG+R+ Sbjct: 178 RVALIGRPNVGKSSLVNAILGEERVIVSDIAGTTRDAIDTPFEKDGQKYVLIDTAGMRKR 237 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + EK + R +E AD++L++ Sbjct: 238 GKVYETTEKYSVMRAMRAIERADVVLVV 265 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 1/87 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS++FN + ++IV D PG TRD + + G I DT GI + Sbjct: 6 VAIVGRPNVGKSTIFNRIIGDRLSIVEDKPGITRDRIYGISEWNGKSFSIIDTGGIEIDG 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE 307 +D++ K + L +E AD+I+ + + Sbjct: 66 EDVILKSIRMQAELAIEEADVIVFMSD 92 >gi|122702747|emb|CAL88563.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702853|emb|CAL88616.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQISDLIL 90 >gi|293373216|ref|ZP_06619578.1| small GTP-binding protein domain protein [Bacteroides ovatus SD CMC 3f] gi|292631864|gb|EFF50480.1| small GTP-binding protein domain protein [Bacteroides ovatus SD CMC 3f] Length = 395 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 80/161 (49%), Gaps = 17/161 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280 I G N+GKSSL NAL +D A+V+D PGTT D+++ ++++G DT G + Sbjct: 14 IAFFGRRNSGKSSLINALTGQDTALVSDTPGTTTDLVSKAMEIQGIGPCLFIDTPGFDDE 73 Query: 281 DDIVEKEGIKRTFLEVENADLILLL--------KEINS---KKEISFPKNIDFIFIGTKS 329 ++ E I RT +E D+ LLL KE+ + +K I ++ I I S Sbjct: 74 GELGELR-ISRTLKAIEKTDIALLLCGDTFSHEKEMLALLKEKNIPVIPVLNKIDIRENS 132 Query: 330 DLYSTYTEE----YDHLISSFTGEGLEELINKIKSILSNKF 366 D +TY EE LIS+ G+E++ I L + F Sbjct: 133 DSLATYIEEECKIRPLLISAKEKTGIEQIRQAILEKLPSDF 173 >gi|16803976|ref|NP_465461.1| GTP-binding protein EngA [Listeria monocytogenes EGD-e] gi|46908170|ref|YP_014559.1| GTP-binding protein EngA [Listeria monocytogenes serotype 4b str. F2365] gi|217963911|ref|YP_002349589.1| GTP-binding protein EngA [Listeria monocytogenes HCC23] gi|224498613|ref|ZP_03666962.1| GTP-binding protein EngA [Listeria monocytogenes Finland 1988] gi|224501264|ref|ZP_03669571.1| GTP-binding protein EngA [Listeria monocytogenes FSL R2-561] gi|226224541|ref|YP_002758648.1| hypothetical protein Lm4b_01954 [Listeria monocytogenes Clip81459] gi|254825568|ref|ZP_05230569.1| GTPase [Listeria monocytogenes FSL J1-194] gi|254827178|ref|ZP_05231865.1| GTPase [Listeria monocytogenes FSL N3-165] gi|254831462|ref|ZP_05236117.1| GTP-binding protein EngA [Listeria monocytogenes 10403S] gi|254899366|ref|ZP_05259290.1| GTP-binding protein EngA [Listeria monocytogenes J0161] gi|254912495|ref|ZP_05262507.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|254931892|ref|ZP_05265251.1| GTPase [Listeria monocytogenes HPB2262] gi|254936822|ref|ZP_05268519.1| GTPase [Listeria monocytogenes F6900] gi|254993214|ref|ZP_05275404.1| GTP-binding protein EngA [Listeria monocytogenes FSL J2-064] gi|255028956|ref|ZP_05300907.1| GTP-binding protein EngA [Listeria monocytogenes LO28] gi|284802382|ref|YP_003414247.1| GTP-binding protein EngA [Listeria monocytogenes 08-5578] gi|284995524|ref|YP_003417292.1| GTP-binding protein EngA [Listeria monocytogenes 08-5923] gi|290892097|ref|ZP_06555093.1| GTPase [Listeria monocytogenes FSL J2-071] gi|300763753|ref|ZP_07073750.1| GTPase [Listeria monocytogenes FSL N1-017] gi|26006722|sp|Q8Y5W8|DER_LISMO RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|67460310|sp|Q71Y78|DER_LISMF RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|254783158|sp|B8DBY9|DER_LISMH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|259645882|sp|C1KWN7|DER_LISMC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|16411390|emb|CAD00015.1| lmo1937 [Listeria monocytogenes EGD-e] gi|46881440|gb|AAT04736.1| GTPase family protein [Listeria monocytogenes serotype 4b str. F2365] gi|217333181|gb|ACK38975.1| GTP-binding protein EngA [Listeria monocytogenes HCC23] gi|225877003|emb|CAS05712.1| Hypothetical protein of unknown function [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258599561|gb|EEW12886.1| GTPase [Listeria monocytogenes FSL N3-165] gi|258609417|gb|EEW22025.1| GTPase [Listeria monocytogenes F6900] gi|284057944|gb|ADB68885.1| GTP-binding protein EngA [Listeria monocytogenes 08-5578] gi|284060991|gb|ADB71930.1| GTP-binding protein EngA [Listeria monocytogenes 08-5923] gi|290558220|gb|EFD91738.1| GTPase [Listeria monocytogenes FSL J2-071] gi|293583444|gb|EFF95476.1| GTPase [Listeria monocytogenes HPB2262] gi|293590479|gb|EFF98813.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|293594811|gb|EFG02572.1| GTPase [Listeria monocytogenes FSL J1-194] gi|300515489|gb|EFK42539.1| GTPase [Listeria monocytogenes FSL N1-017] gi|307571519|emb|CAR84698.1| GTPase family protein [Listeria monocytogenes L99] gi|313607930|gb|EFR84070.1| ribosome-associated GTPase EngA [Listeria monocytogenes FSL F2-208] gi|328466285|gb|EGF37442.1| GTP-binding protein Der [Listeria monocytogenes 1816] gi|328472780|gb|EGF43629.1| GTP-binding protein Der [Listeria monocytogenes 220] gi|332312377|gb|EGJ25472.1| GTPase Der [Listeria monocytogenes str. Scott A] Length = 436 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 37/115 (32%), Positives = 63/115 (54%), Gaps = 5/115 (4%) Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262 + +H + + E + K ++G N GKSS+ NAL +D IV+DI GTTRD + Sbjct: 159 VRAHFPKEEEEEYPDDTVKFSLIGRPNVGKSSILNALLGEDRVIVSDIAGTTRDAIDTTY 218 Query: 263 DLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEI 314 +G + DTAG+R+ + EK + R +E +D++L++ IN+++ I Sbjct: 219 TFDGQDYVMIDTAGMRKRGKVYESTEKYSVLRAMRAIERSDVVLVV--INAEEGI 271 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN + + V+IV D+PG TRD + + G I DT GI +D Sbjct: 6 VAIVGRPNVGKSTIFNRIVGERVSIVEDVPGVTRDRIYNSAEWLGKEFNIIDTGGIDLSD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + ++ + + ++ AD+I+ + Sbjct: 66 EPFLEQIRAQAEIAIDEADVIIFI 89 >gi|325479528|gb|EGC82624.1| ribosome biogenesis GTPase Der [Anaerococcus prevotii ACS-065-V-Col13] Length = 439 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 40/99 (40%), Positives = 54/99 (54%), Gaps = 3/99 (3%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273 E I + +I I+G NAGKSSL N L +D IVTDI GTTRD + + D Sbjct: 170 EAIEDETRIAIIGKPNAGKSSLVNLLLNEDRMIVTDIAGTTRDAVDSYWTYNDNNYVLID 229 Query: 274 TAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEIN 309 TAG+R + VE +RTF V++A++ L L + N Sbjct: 230 TAGLRRKSKVKENVEYYANQRTFDAVDSAEVCLFLIDAN 268 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 80/165 (48%), Gaps = 30/165 (18%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI---- 277 + ++G +N GKS+LFN L K +I D+ G TRD + ++ + + DT G+ Sbjct: 6 VTLVGRTNVGKSTLFNRLVGKKKSITEDVSGVTRDRIVDKVEWQNNEFLLVDTGGLDISN 65 Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF-----------IFIG 326 +E + K +++ LE D+IL + ++ K+ ++ P +ID I + Sbjct: 66 KEIMNTEVKSQVEKALLE---TDMILFV--VDGKEGVN-PYDIDIANEIRKYNKPVIIVA 119 Query: 327 TK-------SDLYSTYTEEYDHL--ISSFTGEGLEELINKIKSIL 362 K D+Y Y +D L IS+ +GL +L++KI S + Sbjct: 120 NKLDSFKIPDDIYDFYQFGFDDLSMISAEQSKGLGDLLDKIISFI 164 >gi|325124482|gb|ADY84005.1| GTP-binding protein [Acinetobacter calcoaceticus PHEA-2] Length = 469 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 50/84 (59%), Gaps = 3/84 (3%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G ++ I+G N GKS+L N L +D + D PGTTRD + I + EG + DTAG+R Sbjct: 176 GLRLAIIGRPNVGKSTLVNRLLGEDRVVAFDQPGTTRDSIYIPFEREGRKYTLIDTAGVR 235 Query: 279 ---ETDDIVEKEGIKRTFLEVENA 299 + D+++EK I +T +++A Sbjct: 236 RKGKVDEMIEKFSIVKTLQAMKDA 259 Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust. Identities = 17/35 (48%), Positives = 22/35 (62%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 I ++G N GKS+LFN + K A+V D G TRD Sbjct: 5 IALIGRPNVGKSTLFNQITKSRDALVADFAGLTRD 39 >gi|258647985|ref|ZP_05735454.1| ribosome-associated GTPase EngA [Prevotella tannerae ATCC 51259] gi|260851826|gb|EEX71695.1| ribosome-associated GTPase EngA [Prevotella tannerae ATCC 51259] Length = 437 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 35/85 (41%), Positives = 51/85 (60%), Gaps = 3/85 (3%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 I+G NAGKSSL NA ++ IVTDI GTTRD + D G+ + DTAGIR+ + Sbjct: 180 IVGRPNAGKSSLINAFIGEERNIVTDIAGTTRDSILTRYDKFGFDFYLVDTAGIRKKGKV 239 Query: 284 ---VEKEGIKRTFLEVENADLILLL 305 +E + R+ +E++D+ +LL Sbjct: 240 NEDLEFYSVMRSIRAIEHSDVCILL 264 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/85 (42%), Positives = 47/85 (55%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 + I+G N GKS+LFN L AIV++ GTTRD + G + I DT G + + Sbjct: 5 VAIVGRPNVGKSTLFNRLTGTRQAIVSEEAGTTRDRQYGKCEWGGQIFSIVDTGGWVVNS 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 DDI E E K+ + E ADLIL L Sbjct: 65 DDIFEGEIRKQVLVATEEADLILFL 89 >gi|220917392|ref|YP_002492696.1| small GTP-binding protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219955246|gb|ACL65630.1| small GTP-binding protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 465 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 33/85 (38%), Positives = 50/85 (58%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + ++G N GKS+LFN LA + VAIV D+PG TRD D+ EG V + DT G E+ Sbjct: 8 VALVGRPNVGKSTLFNRLAGRRVAIVEDVPGVTRDRNYADVIWEGRAVSVVDTGGFEPES 67 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 D + + ++ L V+ A ++L+ Sbjct: 68 RDRLMSQVREQAQLAVDEASAVVLV 92 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 41/66 (62%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKS+ NAL ++ +V+D+PGTTRD + + +G ++DTAGIR Sbjct: 197 RLAIVGRPNVGKSTFVNALLGEERFVVSDVPGTTRDAIDSLVAHKGRRFVVTDTAGIRRK 256 Query: 281 DDIVEK 286 I +K Sbjct: 257 RSIAQK 262 >gi|122702645|emb|CAL88512.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMVK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|116873379|ref|YP_850160.1| GTP-binding protein EngA [Listeria welshimeri serovar 6b str. SLCC5334] gi|123458584|sp|A0AK49|DER_LISW6 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|116742257|emb|CAK21381.1| GTPase family protein [Listeria welshimeri serovar 6b str. SLCC5334] Length = 436 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 37/115 (32%), Positives = 63/115 (54%), Gaps = 5/115 (4%) Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262 + +H + + E + K ++G N GKSS+ NAL +D IV+DI GTTRD + Sbjct: 159 VRAHFPKEEEEEYPDDTVKFSLIGRPNVGKSSILNALLGEDRVIVSDIAGTTRDAIDTTY 218 Query: 263 DLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEI 314 +G + DTAG+R+ + EK + R +E +D++L++ IN+++ I Sbjct: 219 TFDGQDYVMIDTAGMRKRGKVYESTEKYSVLRAMRAIERSDVVLVV--INAEEGI 271 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN + + V+IV D+PG TRD + + G I DT GI +D Sbjct: 6 VAIVGRPNVGKSTIFNRIVGERVSIVEDVPGVTRDRIYNSAEWLGKEFNIIDTGGIDLSD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + ++ + + ++ AD+I+ + Sbjct: 66 EPFLEQIRAQAEIAIDEADVIIFI 89 >gi|319956402|ref|YP_004167665.1| ribosome-associated GTPase enga [Nitratifractor salsuginis DSM 16511] gi|319418806|gb|ADV45916.1| ribosome-associated GTPase EngA [Nitratifractor salsuginis DSM 16511] Length = 462 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 43/91 (47%), Positives = 54/91 (59%), Gaps = 12/91 (13%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD----VLTIDLDLEGYLVKISDTAG 276 K+ ILG N GKSSLFN LA+K AI +D+ GTTRD ++TI D E L+ DT G Sbjct: 3 KVAILGRPNVGKSSLFNRLARKRDAITSDVSGTTRDIKKNIVTISEDREFELL---DTGG 59 Query: 277 IRETDDIVEK--EGIKRTFLEVENADLILLL 305 I E+D + K E KR E AD+IL + Sbjct: 60 IDESDALFSKVAEMSKRAAKE---ADVILYM 87 Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 35/87 (40%), Positives = 51/87 (58%), Gaps = 2/87 (2%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ ILG N GKSSL NAL ++ ++V+++ GTT D + + Y + DTAGIR Sbjct: 199 KVAILGRPNVGKSSLLNALLGEERSVVSEVAGTTIDPVDETIIHGDYEITFVDTAGIRRR 258 Query: 281 DDI--VEKEGIKRTFLEVENADLILLL 305 I +EK + RT ++ AD+ LLL Sbjct: 259 SKILGIEKYALGRTEKMLQEADIALLL 285 >gi|262371080|ref|ZP_06064402.1| GTPase [Acinetobacter johnsonii SH046] gi|262313966|gb|EEY95011.1| GTPase [Acinetobacter johnsonii SH046] Length = 469 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 55/91 (60%), Gaps = 3/91 (3%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 G ++ I+G N GKS+L N L ++ + D PGTTRD + I + +G + DTAG+ Sbjct: 175 TGLRLAIIGRPNVGKSTLVNRLLGEERVVAFDQPGTTRDSIYIPYERDGRQYTLIDTAGV 234 Query: 278 R---ETDDIVEKEGIKRTFLEVENADLILLL 305 R + D+++EK I +T +++A +I+++ Sbjct: 235 RRKGKVDEMIEKFSIVKTLQAIKDAHVIVVV 265 Score = 38.1 bits (87), Expect = 2.7, Method: Compositional matrix adjust. Identities = 17/35 (48%), Positives = 22/35 (62%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 I ++G N GKS+LFN + K A+V D G TRD Sbjct: 5 IALIGRPNVGKSTLFNQITKSRDALVADFAGLTRD 39 >gi|260549069|ref|ZP_05823290.1| small GTP-binding domain-containing protein [Acinetobacter sp. RUH2624] gi|260407797|gb|EEX01269.1| small GTP-binding domain-containing protein [Acinetobacter sp. RUH2624] Length = 469 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 50/84 (59%), Gaps = 3/84 (3%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G ++ I+G N GKS+L N L +D + D PGTTRD + I + EG + DTAG+R Sbjct: 176 GLRLAIIGRPNVGKSTLVNRLLGEDRVVAFDQPGTTRDSIYIPFEREGRKYTLIDTAGVR 235 Query: 279 ---ETDDIVEKEGIKRTFLEVENA 299 + D+++EK I +T +++A Sbjct: 236 RKGKVDEMIEKFSIVKTLQAMKDA 259 Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust. Identities = 17/35 (48%), Positives = 22/35 (62%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 I ++G N GKS+LFN + K A+V D G TRD Sbjct: 5 IALIGRPNVGKSTLFNQITKSRDALVADFAGLTRD 39 >gi|255323406|ref|ZP_05364537.1| ribosome-associated GTPase EngA [Campylobacter showae RM3277] gi|255299443|gb|EET78729.1| ribosome-associated GTPase EngA [Campylobacter showae RM3277] Length = 467 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 37/91 (40%), Positives = 53/91 (58%), Gaps = 2/91 (2%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R ++ I+G N GKSSL NAL K+ A+V+DI GTT D + E + + DTAG Sbjct: 197 RKNIQVGIIGRVNVGKSSLLNALVKESRAVVSDIAGTTIDPVNETFVYEDRVFEFVDTAG 256 Query: 277 IRETDDI--VEKEGIKRTFLEVENADLILLL 305 IR+ I +E+ + RT +E AD+ LL+ Sbjct: 257 IRKRGKIEGIERYALNRTESALELADIALLV 287 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 50/85 (58%), Gaps = 1/85 (1%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI+++G N GKSSLFN LA + +AI +D+ GTTRD +++ + D+ G+ ++ Sbjct: 3 KIILVGKPNVGKSSLFNRLAGRRIAITSDVSGTTRDTNKTIIEIYDRSCVLIDSGGLDDS 62 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 ++ + K T E ++D I+ + Sbjct: 63 SELFKNVKAK-TLAEARSSDAIIFM 86 >gi|189462216|ref|ZP_03011001.1| hypothetical protein BACCOP_02899 [Bacteroides coprocola DSM 17136] gi|189431069|gb|EDV00054.1| hypothetical protein BACCOP_02899 [Bacteroides coprocola DSM 17136] Length = 437 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 53/88 (60%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G NAGKSS+ NA ++ IVT+I GTTRD + D G+ + DTAGIR+ Sbjct: 177 RFAVVGRPNAGKSSIVNAFIGEERNIVTEIAGTTRDSIYTRYDKFGFDFYLVDTAGIRKK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + + +E + R+ +EN+D+ +L+ Sbjct: 237 NKVSEDLEYYSVVRSIRSIENSDVCILM 264 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 51/168 (30%), Positives = 78/168 (46%), Gaps = 22/168 (13%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277 G + I+G N GKS+LFN L K AIV + GTTRD + G + DT G + Sbjct: 2 GNLVAIVGRPNVGKSTLFNRLTKTRQAIVNEQAGTTRDRQYGKSEWLGKEFSVVDTGGWV 61 Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKS 329 ++DI E+E K+ L ++ AD++L + ++ + I I + K+ Sbjct: 62 VNSEDIFEEEIRKQVVLAIDEADVVLFVVDVTNGVTDLDMQVASILRRAKTPVIVVANKT 121 Query: 330 ---DLYSTYTEEYD------HLISSFTGEGLEELINKIKSILSNKFKK 368 DL E Y + IS+ +G G +L++ I S KFKK Sbjct: 122 DNNDLQYNAAEFYSLGLGDPYCISALSGSGTGDLLDLIVS----KFKK 165 >gi|148380476|ref|YP_001255017.1| GTP-binding protein [Clostridium botulinum A str. ATCC 3502] gi|153932865|ref|YP_001384700.1| GTP-binding protein EngA [Clostridium botulinum A str. ATCC 19397] gi|153936714|ref|YP_001388221.1| GTP-binding protein EngA [Clostridium botulinum A str. Hall] gi|166224327|sp|A7FW89|DER_CLOB1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|166224328|sp|A5I4V0|DER_CLOBH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|148289960|emb|CAL84073.1| putative GTP-binding protein EngA [Clostridium botulinum A str. ATCC 3502] gi|152928909|gb|ABS34409.1| GTP-binding protein [Clostridium botulinum A str. ATCC 19397] gi|152932628|gb|ABS38127.1| ribosome-associated GTPase EngA [Clostridium botulinum A str. Hall] Length = 439 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 52/85 (61%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFN LA K ++IV D PG TRD + + + Y + DT GI ++ Sbjct: 6 VAIVGRPNVGKSTLFNKLAGKRISIVQDTPGVTRDRIYAEAEWLNYKFTMIDTGGIEPKS 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 +DI+ + ++ + +E A++I+ L Sbjct: 66 EDIIVSQMRRQAQIAIEMANVIIFL 90 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/87 (37%), Positives = 51/87 (58%), Gaps = 3/87 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I +G N GKSSL N L ++ IV+DIPGTTRD + +D + + DTAG+R Sbjct: 179 IAFIGKPNVGKSSLINKLLGEERLIVSDIPGTTRDSIDSYVDTDFGEFTLIDTAGLRRKS 238 Query: 282 DI---VEKEGIKRTFLEVENADLILLL 305 + +E+ + RT+ +E AD+ +L+ Sbjct: 239 KVKEEIERYSVIRTYASIERADVCILM 265 >gi|159902929|ref|YP_001550273.1| GTP-binding protein EngA [Prochlorococcus marinus str. MIT 9211] gi|226706248|sp|A9BE09|DER_PROM4 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|159888105|gb|ABX08319.1| GTP-binding protein (HSR1-related) [Prochlorococcus marinus str. MIT 9211] Length = 456 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSL N++ + AIV+ I GTTRD + L E K+ DTAGIR Sbjct: 179 QLAIIGRPNVGKSSLLNSICGETRAIVSSIRGTTRDTIDTLLKREQQAWKLIDTAGIRRR 238 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + E GI R+ +E +D+ LL+ Sbjct: 239 RSVSYGPEYFGINRSLKAIERSDVCLLV 266 Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 28/56 (50%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 + I+G N GKS+L N L AIV D PG TRD D K+ DT G+ Sbjct: 6 VAIIGRPNVGKSTLVNRLCGSREAIVDDQPGVTRDRTYQDAFWADREFKVVDTGGL 61 >gi|292806656|gb|ADE42458.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQISDLIL 90 >gi|122702755|emb|CAL88567.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKQKIVLNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|189500937|ref|YP_001960407.1| GTP-binding protein EngA [Chlorobium phaeobacteroides BS1] gi|238692267|sp|B3EMI7|DER_CHLPB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|189496378|gb|ACE04926.1| small GTP-binding protein [Chlorobium phaeobacteroides BS1] Length = 435 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 38/88 (43%), Positives = 49/88 (55%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKSS NAL + IV+DIPGTTRD + L G V + DTAG+R+ Sbjct: 177 KLAIIGRPNVGKSSFVNALLGTNRHIVSDIPGTTRDAIDSRLKRNGKEVLLIDTAGLRKR 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 I +E RT +E D+ LLL Sbjct: 237 TKIDRGIEFYSSVRTDKSIERCDVALLL 264 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 46/89 (51%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L++ AI PG TRD + +G + DT G Sbjct: 5 VALVGRPNVGKSTLFNRLSRSKSAITDSTPGVTRDRHIASAEWQGRKFMVMDTGGYCHDK 64 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310 D + + +++T + AD+IL + ++ S Sbjct: 65 DSLNRAMMEQTLAAIAEADVILFMVDVRS 93 >gi|330807651|ref|YP_004352113.1| GTP-binding protein engA [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375759|gb|AEA67109.1| GTP-binding protein engA [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 490 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 47/183 (25%), Positives = 83/183 (45%), Gaps = 31/183 (16%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 ++G KI I+G N GKS+L N + +D IV D PGTTRD + I + + DTAG Sbjct: 193 KDGIKIAIIGRPNVGKSTLVNRMLGEDRVIVYDQPGTTRDSIYIPFERNEEKYTLIDTAG 252 Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLLKEIN------------------------ 309 +R+ I VEK + +T +++A++++ + + Sbjct: 253 VRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDAREGVVDHDLNLLGFALEAGRALVIA 312 Query: 310 -SKKEISFPKNIDFIFIGTKSDLYSTYTEEYD-HLISSFTGEGLEELINKIKSILSNKFK 367 +K + P DF+ I + L+ + + D H IS+ G G+ L +++ + Sbjct: 313 INKWDGMTPSERDFVKIELQRRLF--FVDFADIHFISALHGTGVGNLYASVQNSFKSAVT 370 Query: 368 KLP 370 + P Sbjct: 371 RWP 373 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L + AIV D+ G TRD + +G + DT GI + Sbjct: 5 IALVGRPNVGKSTLFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRTYILVDTGGISGDE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++++ +++ L +E AD++L L Sbjct: 65 HGMDEKMAEQSLLAIEEADVVLFL 88 >gi|237725292|ref|ZP_04555773.1| GTP-binding protein engA [Bacteroides sp. D4] gi|229436558|gb|EEO46635.1| GTP-binding protein engA [Bacteroides dorei 5_1_36/D4] Length = 437 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 53/88 (60%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G NAGKSS+ NA +D IVT+I GTTRD + + G+ + DTAGIR+ Sbjct: 177 RFAVVGRPNAGKSSIINAFIGEDRNIVTEIAGTTRDSIYTRYEKFGFDFYLVDTAGIRKK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + + +E + R+ +EN+D+ +L+ Sbjct: 237 NKVNEDLEYYSVIRSIRSIENSDVCILM 264 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/91 (37%), Positives = 52/91 (57%), Gaps = 1/91 (1%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277 G + I+G N GKS+LFN L K AIV + GTTRD + G+ + DT G + Sbjct: 2 GNLVAIVGRPNVGKSTLFNRLTKTRQAIVNEQAGTTRDRQYGKSEWVGHEFSVVDTGGWV 61 Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEI 308 +DD+ E+E K+ L ++ AD+IL + ++ Sbjct: 62 VNSDDVFEEEIRKQVSLAIDEADVILFVVDV 92 >gi|126663301|ref|ZP_01734299.1| GTP-binding protein EngA [Flavobacteria bacterium BAL38] gi|126624959|gb|EAZ95649.1| GTP-binding protein EngA [Flavobacteria bacterium BAL38] Length = 436 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G NAGKSS NAL +D +VTDI GTTRD + + G+ + DTAGIR Sbjct: 178 RFCVVGRPNAGKSSFINALIGEDRFVVTDIAGTTRDAIDTRYNRFGFEFNLVDTAGIRRK 237 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E + R+ +E++D+ LL+ Sbjct: 238 AKVKEDLEFYSVMRSVRAIEHSDVCLLV 265 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 72/160 (45%), Gaps = 20/160 (12%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 + I+G N GKS+ FN L ++ AIV + G TRD + G + DT G I+ + Sbjct: 5 VAIVGRPNVGKSTFFNRLIQRREAIVDSVSGVTRDRNYGKSEWNGKEFSVIDTGGYIKGS 64 Query: 281 DDIVEKEGIKRTFLEVENADLIL------------------LLKEINSKKEISFPKNIDF 322 DDI E E K+ L ++ AD I+ LL+++ + K + Sbjct: 65 DDIFEAEIRKQVELAIDEADAIIFVVDVEEGITPMDDEVAKLLRKVKKPVLLVINKVDNA 124 Query: 323 IFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362 + + Y+ EY IS +G G EL++K+ +L Sbjct: 125 MREKDAVEFYNLGLGEY-FTISGMSGSGTGELLDKLVEVL 163 >gi|157961137|ref|YP_001501171.1| GTP-binding protein EngA [Shewanella pealeana ATCC 700345] gi|189037162|sp|A8H249|DER_SHEPA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|157846137|gb|ABV86636.1| small GTP-binding protein [Shewanella pealeana ATCC 700345] Length = 490 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 49/89 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD L GY + DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAHLAGYEFIVVDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310 + +E +++ +E AD++L L + + Sbjct: 65 EGIETRMAEQSLAAIEEADVVLFLTDARA 93 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/98 (34%), Positives = 61/98 (62%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D PGTTRD + I ++ +G + DTAG+R Sbjct: 201 KLAIIGKPNVGKSTLTNRILGEERVVVYDEPGTTRDSIYIPMERQGREYVLIDTAGVRRR 260 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + VEK + +T VE+++++LL+ I++++ I+ Sbjct: 261 SKVHETVEKFSVIKTLKAVEDSNVVLLV--IDAREGIA 296 >gi|88858476|ref|ZP_01133118.1| GTP-binding protein EngA [Pseudoalteromonas tunicata D2] gi|88820093|gb|EAR29906.1| GTP-binding protein EngA [Pseudoalteromonas tunicata D2] Length = 492 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 34/98 (34%), Positives = 60/98 (61%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 K+ I+G N GKS+L N + ++ IV D+PGTTRD + I + + DTAG+R Sbjct: 206 KLAIIGRPNVGKSTLTNRILGEERVIVYDMPGTTRDSIYIPMTRNDQEYVLIDTAGVRKR 265 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + D+ EK + +T +E+A+++LL+ +++++ IS Sbjct: 266 KKVSDVAEKFSVIKTLKAIEDANVVLLV--VDAREGIS 301 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L + A+V D PG TRD + Y + DT GI ++ Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVADFPGLTRDRKYGQAKYDEYEFIVVDTGGIDGSE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + +E E +++ L +E AD+++ L Sbjct: 65 EGIELEMAEQSLLAIEEADVVMFL 88 >gi|330997747|ref|ZP_08321586.1| ribosome biogenesis GTPase Der [Paraprevotella xylaniphila YIT 11841] gi|329569846|gb|EGG51604.1| ribosome biogenesis GTPase Der [Paraprevotella xylaniphila YIT 11841] Length = 437 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 77/161 (47%), Gaps = 20/161 (12%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277 G + I+G N GKS+LFN L + AIV+D GTTRD + G + DT G + Sbjct: 2 GNIVAIVGRPNVGKSTLFNRLTQTRHAIVSDEAGTTRDRQYGKSEWTGCEFSVIDTGGWV 61 Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKS 329 +DDI E+E K+ L E AD++L L ++ + I I + K+ Sbjct: 62 VNSDDIFEEEIRKQVTLATEEADVVLFLVDVRNGVTDLDEAVANILRRTKKPVILVANKA 121 Query: 330 D----LYSTYTEEY------DHLISSFTGEGLEELINKIKS 360 D +YS E Y + IS+ TG G EL+++I S Sbjct: 122 DTNEWIYSA-AEFYALGLGDPYCISAATGSGTGELLDQIVS 161 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/183 (26%), Positives = 84/183 (45%), Gaps = 32/183 (17%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G N GKSSL NA ++ IVTDI GTTRD + G+ + DTAGIR Sbjct: 177 RFAVVGRPNVGKSSLINAFIGEERNIVTDIAGTTRDSIYTRYTKFGFDFYLVDTAGIRRK 236 Query: 281 DDIVEK---EGIKRTFLEVENADLILLL---------KEINSKKEISFPKNIDFIFIGTK 328 + + E + R+ +EN+D+ +L+ +++N + I N + + K Sbjct: 237 NKVTEDLEYYSVMRSIRAIENSDVCILMLDAERGIEAQDLNIFQLIQ-RNNKSLVVVVNK 295 Query: 329 SDLY----STYTEEYDHLI---------------SSFTGEGLEELINKIKSILSNKFKKL 369 DL + EY++ I S+ T + + +++ K + N+ K++ Sbjct: 296 WDLVEEKNTVVMNEYEYAIRNRMAPFDDFPIIFASALTKQRIFKVLETAKEVYQNRKKRV 355 Query: 370 PFS 372 P S Sbjct: 356 PTS 358 >gi|297517161|ref|ZP_06935547.1| GTP-binding protein EngA [Escherichia coli OP50] Length = 202 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG DT GI T+ Sbjct: 14 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 73 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 D VE +++ L +E AD++L + Sbjct: 74 DGVETRMAEQSLLAIEEADVVLFM 97 >gi|325187572|emb|CCA22109.1| ras family GTPase putative [Albugo laibachii Nc14] gi|325188870|emb|CCA23399.1| ras family GTPase putative [Albugo laibachii Nc14] Length = 535 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 1/89 (1%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 N +++ ++G +N GKS+LFN L K AIV ++PGTTRD + G ++ DT G+ Sbjct: 49 NQFRLALVGRTNVGKSTLFNRLTKSRRAIVHNVPGTTRDRRFAPGRIAGLEFEVIDTGGL 108 Query: 278 RETDDIVEKEG-IKRTFLEVENADLILLL 305 + +EG + +T + V ADLI L Sbjct: 109 EDAPSGSLEEGMLSQTKIAVHEADLIFFL 137 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/97 (27%), Positives = 53/97 (54%), Gaps = 5/97 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI--- 277 K I+G N GKS+L N + ++D + PG TRD + + + +K+ DTAGI Sbjct: 243 KFAIVGRPNVGKSTLLNRIIREDRVLTGPEPGVTRDSIEVPWTFGEHEIKLIDTAGIRRH 302 Query: 278 --RETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312 R+ + +E ++ +F ++ A ++ ++ +++ KK Sbjct: 303 SKRDHSNQIEDLSVRDSFDAIDKAQVVAIVTDLSEKK 339 >gi|196229979|ref|ZP_03128843.1| small GTP-binding protein [Chthoniobacter flavus Ellin428] gi|196226305|gb|EDY20811.1| small GTP-binding protein [Chthoniobacter flavus Ellin428] Length = 462 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 43/136 (31%), Positives = 69/136 (50%), Gaps = 4/136 (2%) Query: 174 ADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHI-SQGKLGEIIRNGYKIVILGHSNAGK 232 + L FSE + ++ +L + +L+ + + I + G + KI I+G N GK Sbjct: 102 SQLGFSESIAISAEHNRGILPLVAWLERMLPAPIFDEAGPGSDPASPIKIAIVGRPNVGK 161 Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---ETDDIVEKEGI 289 SSL NA+ D +V+ I GTTRD + I + G + DTAGIR + D+ VE + Sbjct: 162 SSLTNAILNDDRTLVSPISGTTRDAIDIPYERHGQHYVLIDTAGIRPRGKVDNSVEVFSV 221 Query: 290 KRTFLEVENADLILLL 305 R+ + AD+ L+ Sbjct: 222 MRSETSIRRADICCLV 237 >gi|122700887|emb|CAL88032.1| GTPase [Helicobacter pylori] Length = 170 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQVSDLIL 90 >gi|317452837|emb|CBL87854.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMVK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|139439670|ref|ZP_01773083.1| Hypothetical protein COLAER_02111 [Collinsella aerofaciens ATCC 25986] gi|133775011|gb|EBA38831.1| Hypothetical protein COLAER_02111 [Collinsella aerofaciens ATCC 25986] Length = 444 Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 33/91 (36%), Positives = 53/91 (58%), Gaps = 3/91 (3%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 + + I+G NAGKSSLFN + D +IV++I GTTRD + ++ G ++ DTAGI Sbjct: 178 DALNVAIIGRPNAGKSSLFNRILGADRSIVSNIAGTTRDAIDTVVERNGKHYRMVDTAGI 237 Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLL 305 R+ + +E + R ++ AD+ LL+ Sbjct: 238 RKKSTVYENIEYYSMVRGLRAIDRADVALLV 268 Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 2/64 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--E 279 + ++G N GKS+L N LA+ AIV + G TRD D G I DT GI + Sbjct: 5 VAVVGRPNVGKSTLVNRLAQTSDAIVHESRGVTRDRSYHTADWNGREFTIVDTGGIEPLK 64 Query: 280 TDDI 283 +DD+ Sbjct: 65 SDDV 68 >gi|119513020|ref|ZP_01632078.1| Small GTP-binding protein domain [Nodularia spumigena CCY9414] gi|119462337|gb|EAW43316.1| Small GTP-binding protein domain [Nodularia spumigena CCY9414] Length = 454 Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 34/91 (37%), Positives = 50/91 (54%), Gaps = 3/91 (3%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 N K+ I+G N GKSSL NA ++ +IV+ I GTTRD + + + ++ DTAGI Sbjct: 175 NEIKVAIIGRPNVGKSSLLNAFVGEERSIVSPISGTTRDAIDTVISRNDQVYRLIDTAGI 234 Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLL 305 R I E I R F + AD++L++ Sbjct: 235 RRKKQIDYGTEFFSINRAFKAIRRADVVLMV 265 Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 31/61 (50%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+L N LA + AIV D PG TRD + + DT G+ D Sbjct: 6 VAIIGRPNVGKSTLVNRLAGEQTAIVHDEPGVTRDRTYMPSYWRDRDFLVVDTGGLVFND 65 Query: 282 D 282 D Sbjct: 66 D 66 >gi|299771613|ref|YP_003733639.1| GTP-binding protein EngA [Acinetobacter sp. DR1] gi|298701701|gb|ADI92266.1| GTP-binding protein EngA [Acinetobacter sp. DR1] Length = 469 Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 55/90 (61%), Gaps = 3/90 (3%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G ++ I+G N GKS+L N L +D + D PGTTRD + I + +G + DTAG+R Sbjct: 176 GLRLAIIGRPNVGKSTLVNRLLGEDRVVAFDQPGTTRDSIYIPFERDGRQYTLIDTAGVR 235 Query: 279 ---ETDDIVEKEGIKRTFLEVENADLILLL 305 + ++++EK I +T +++A +++++ Sbjct: 236 RKGKVEEMIEKFSIVKTLQAIKDAHVVVVV 265 Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust. Identities = 17/35 (48%), Positives = 22/35 (62%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 I ++G N GKS+LFN + K A+V D G TRD Sbjct: 5 IALIGRPNVGKSTLFNQITKSRDALVADFAGLTRD 39 >gi|293610300|ref|ZP_06692601.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827532|gb|EFF85896.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 469 Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 50/84 (59%), Gaps = 3/84 (3%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G ++ I+G N GKS+L N L +D + D PGTTRD + I + EG + DTAG+R Sbjct: 176 GLRLAIIGRPNVGKSTLVNRLLGEDRVVAFDQPGTTRDSIYIPFEREGRKYTLIDTAGVR 235 Query: 279 ---ETDDIVEKEGIKRTFLEVENA 299 + D+++EK I +T +++A Sbjct: 236 RKGKVDEMIEKFSIVKTLQAMKDA 259 Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust. Identities = 17/35 (48%), Positives = 22/35 (62%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 I ++G N GKS+LFN + K A+V D G TRD Sbjct: 5 IALIGRPNVGKSTLFNQITKSRDALVADFAGLTRD 39 >gi|317452849|emb|CBL87860.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 49/82 (59%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V+ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVEFLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122701555|emb|CAL88167.1| GTPase [Helicobacter pylori] Length = 170 Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKASQMSDLIL 90 >gi|122701431|emb|CAL88105.1| GTPase [Helicobacter pylori] gi|122701437|emb|CAL88108.1| GTPase [Helicobacter pylori] Length = 170 Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIVLNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ KE + +DLIL + Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYI 92 >gi|122701723|emb|CAL88250.1| GTPase [Helicobacter pylori] Length = 170 Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIVLNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|18075605|emb|CAD11198.1| GTP-binding protein [Helicobacter pylori] Length = 347 Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 11 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 70 ALLSKEIKALNLKAAQMSDLIL 91 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/99 (36%), Positives = 58/99 (58%), Gaps = 6/99 (6%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273 EII+ G I+G N GKSSL NAL KK+ ++V+ + GTT D + + + + D Sbjct: 199 EIIQVG----IIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVD 254 Query: 274 TAGIRETDDI--VEKEGIKRTFLEVENADLILLLKEINS 310 TAGIR I +EK ++RT +E + + LL+ ++++ Sbjct: 255 TAGIRHRGKILGIEKYALERTQKALEKSHIALLVLDVSA 293 >gi|312866411|ref|ZP_07726629.1| ribosome biogenesis GTPase Der [Streptococcus downei F0415] gi|311098105|gb|EFQ56331.1| ribosome biogenesis GTPase Der [Streptococcus downei F0415] Length = 436 Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 75/148 (50%), Gaps = 31/148 (20%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID-LDLEGYLVKISDTAGIRE 279 K ++G N GKSSL NAL +D I + + GTTRD + D +D EG + DTAG+R+ Sbjct: 176 KFSLIGRPNVGKSSLINALLGEDRVIASPVAGTTRDAIDTDFVDEEGQEYTMIDTAGMRK 235 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336 + + EK I R+ ++ +D++L++ IN+++ I Sbjct: 236 SGKVYENTEKYSIMRSMRAIDRSDVVLMV--INAEEGI---------------------- 271 Query: 337 EEYDHLISSF---TGEGLEELINKIKSI 361 +YD I+ F G+G+ ++NK +I Sbjct: 272 RDYDKRIAGFAHEAGKGIVIVVNKWDTI 299 Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 34/60 (56%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN +A + ++IV D+ G TRD + + + DT GI + D Sbjct: 6 VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTKAEWLNRQFSLIDTGGIDDVD 65 >gi|222616294|gb|EEE52426.1| hypothetical protein OsJ_34551 [Oryza sativa Japonica Group] Length = 563 Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 7/93 (7%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRET 280 I I+G N GKSS+ NAL +D IV+ + GTTRD + + E G K+ DTAGIR Sbjct: 273 IAIVGRPNVGKSSILNALVGEDRTIVSPVSGTTRDAIDTEFTTEDGQKYKLIDTAGIRRR 332 Query: 281 DDIV------EKEGIKRTFLEVENADLILLLKE 307 + E +KR F + +D++ L+ E Sbjct: 333 AAVASAGSTTETLSVKRAFRAIRRSDVVALVVE 365 >gi|197122609|ref|YP_002134560.1| GTP-binding protein EngA [Anaeromyxobacter sp. K] gi|196172458|gb|ACG73431.1| small GTP-binding protein [Anaeromyxobacter sp. K] Length = 465 Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 33/85 (38%), Positives = 50/85 (58%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + ++G N GKS+LFN LA + VAIV D+PG TRD D+ EG V + DT G E+ Sbjct: 8 VALVGRPNVGKSTLFNRLAGRRVAIVEDVPGVTRDRNYADVIWEGRAVSVVDTGGFEPES 67 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 D + + ++ L V+ A ++L+ Sbjct: 68 RDRLMSQVREQAQLAVDEASAVVLV 92 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKS+ NAL ++ +V+D+PGTTRD + + +G ++DTAGIR Sbjct: 197 RLAIVGRPNVGKSTFVNALLGEERFVVSDVPGTTRDAIDSLVAHKGRRFVVTDTAGIRRK 256 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 I VE + R ++ A+++ L Sbjct: 257 RSIALKVESFSVVRAMKAMDQAEVVACL 284 >gi|122700911|emb|CAL88044.1| GTPase [Helicobacter pylori] Length = 170 Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQISDLIL 90 >gi|70732274|ref|YP_262030.1| GTP-binding protein EngA [Pseudomonas fluorescens Pf-5] gi|123653208|sp|Q4K6V3|DER_PSEF5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|68346573|gb|AAY94179.1| GTP-binding protein EngA [Pseudomonas fluorescens Pf-5] Length = 490 Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 54/92 (58%), Gaps = 3/92 (3%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 ++G KI I+G N GKS+L N + +D IV D PGTTRD + I + + DTAG Sbjct: 193 KDGIKIAIIGRPNVGKSTLVNRMLGEDRVIVYDQPGTTRDSIYIPFERNDEKYTLIDTAG 252 Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLL 305 +R+ I VEK + +T +++A++++ + Sbjct: 253 VRKRGKIHEEVEKFSVVKTLQAIKDANVVIFV 284 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L + AIV D+ G TRD + +G + DT GI + Sbjct: 5 IALVGRPNVGKSTLFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRTYILIDTGGISGDE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++++ +++ L +E AD++L L Sbjct: 65 HGMDEKMAEQSLLAIEEADVVLFL 88 >gi|51892817|ref|YP_075508.1| GTP-binding protein [Symbiobacterium thermophilum IAM 14863] gi|81826113|sp|Q67NS9|DER_SYMTH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|51856506|dbj|BAD40664.1| GTP-binding protein [Symbiobacterium thermophilum IAM 14863] Length = 471 Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 2/90 (2%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--E 279 + I+G N GKS+LFN L + AIV D PG TRD L D + G + + DT GI+ + Sbjct: 5 VAIVGRPNVGKSTLFNRLTQSRHAIVEDQPGVTRDRLYADTEWNGRTLTLVDTGGIQLDK 64 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEIN 309 D +E ++ L + AD+I+ + ++ Sbjct: 65 EGDTIEAHVTRQAELAIREADVIIFVVDVT 94 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 53/88 (60%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 ++ ++G N GKSSL NA+ ++ IV+D+PGTTRD + + ++ + DTAG+R Sbjct: 179 RVAVIGRPNVGKSSLVNAILGEERVIVSDVPGTTRDAIDVLVERGEDKFLLIDTAGMRRK 238 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305 ++ VE+ + R VE A ++L++ Sbjct: 239 ARVEEAVERYSVMRALRAVERAQVVLIV 266 >gi|148546131|ref|YP_001266233.1| GTP-binding protein EngA [Pseudomonas putida F1] gi|166225843|sp|A5VYT9|DER_PSEP1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|148510189|gb|ABQ77049.1| small GTP-binding protein [Pseudomonas putida F1] Length = 487 Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 55/92 (59%), Gaps = 3/92 (3%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 ++G KI I+G N GKS+L N + ++ +V D PGTTRD + I + +G DTAG Sbjct: 190 KDGIKIAIIGRPNVGKSTLVNRMLGEERVVVYDEPGTTRDSIYIPFERDGDKYTFIDTAG 249 Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLL 305 +R+ I VEK + +T +++A++++ + Sbjct: 250 VRKRGKIHEEVEKFSVVKTLQAIKDANVVIFV 281 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS++FN L K AIV D+ G TRD D +G + DT GI + Sbjct: 5 IALVGRPNVGKSTMFNRLTKTRDAIVGDLSGLTRDRQYGDASWQGRSFILIDTGGITGDE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++++ +++ + +E AD +L L Sbjct: 65 VGMDEKMAEQSLMAIEEADYVLFL 88 >gi|242255838|gb|ACS88903.1| GTPase [Helicobacter pylori] Length = 170 Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFVGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|239500761|ref|ZP_04660071.1| GTP-binding protein EngA [Acinetobacter baumannii AB900] Length = 469 Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 50/84 (59%), Gaps = 3/84 (3%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G ++ I+G N GKS+L N L +D + D PGTTRD + I + EG + DTAG+R Sbjct: 176 GLRLAIIGRPNVGKSTLVNRLLGEDRVVAFDQPGTTRDSIYIPFEREGRKYTLIDTAGVR 235 Query: 279 ---ETDDIVEKEGIKRTFLEVENA 299 + D+++EK I +T +++A Sbjct: 236 RKGKVDEMIEKFSIVKTLQAMKDA 259 Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust. Identities = 17/35 (48%), Positives = 22/35 (62%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 I ++G N GKS+LFN + K A+V D G TRD Sbjct: 5 IALIGRPNVGKSTLFNQITKSRDALVADFAGLTRD 39 >gi|218186089|gb|EEC68516.1| hypothetical protein OsI_36791 [Oryza sativa Indica Group] Length = 676 Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 7/93 (7%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRET 280 I I+G N GKSS+ NAL +D IV+ + GTTRD + + E G K+ DTAGIR Sbjct: 386 IAIVGRPNVGKSSILNALVGEDRTIVSPVSGTTRDAIDTEFTTEDGQKYKLIDTAGIRRR 445 Query: 281 DDIV------EKEGIKRTFLEVENADLILLLKE 307 + E +KR F + +D++ L+ E Sbjct: 446 AAVASAGSTTETLSVKRAFRAIRRSDVVALVVE 478 Score = 43.9 bits (102), Expect = 0.055, Method: Compositional matrix adjust. Identities = 20/38 (52%), Positives = 25/38 (65%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 ++ I+G N GKS+LFN L + AIV D PG TRD L Sbjct: 163 RVAIIGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRL 200 >gi|167623303|ref|YP_001673597.1| GTP-binding protein EngA [Shewanella halifaxensis HAW-EB4] gi|189037161|sp|B0TLI8|DER_SHEHH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|167353325|gb|ABZ75938.1| small GTP-binding protein [Shewanella halifaxensis HAW-EB4] Length = 490 Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 49/89 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD L GY + DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAHLAGYEFIVVDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310 + +E +++ +E AD++L L + + Sbjct: 65 EGIETRMAEQSLAAIEEADVVLFLTDARA 93 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/98 (34%), Positives = 61/98 (62%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D PGTTRD + I ++ +G + DTAG+R Sbjct: 201 KLAIIGKPNVGKSTLTNRILGEERVVVYDEPGTTRDSIYIPMERQGREYVLIDTAGVRRR 260 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + VEK + +T VE+++++LL+ I++++ I+ Sbjct: 261 SKVHETVEKFSVIKTLKAVEDSNVVLLV--IDAREGIA 296 >gi|332970913|gb|EGK09889.1| ribosome-associated GTPase EngA [Psychrobacter sp. 1501(2011)] Length = 473 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 55/92 (59%), Gaps = 3/92 (3%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 + G K+ I+G N GKS+L N + +D +V D+PGTTRD + I + G + DTAG Sbjct: 175 QGGLKLAIIGRPNVGKSTLVNRMLGEDRVVVYDMPGTTRDSIYIPYERNGKNYVLIDTAG 234 Query: 277 IRET---DDIVEKEGIKRTFLEVENADLILLL 305 +R D+ VEK + +T ++++++++ + Sbjct: 235 VRRRGRIDEKVEKFSVVKTLQAIKDSNVVVAV 266 Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 32/61 (52%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS++FN + K A+V D+ G TRD D + DT GI E D Sbjct: 7 VALIGRPNVGKSTIFNQMTKTRQALVADLSGLTRDRQYGDATYNNKSFVVIDTGGIGEAD 66 Query: 282 D 282 D Sbjct: 67 D 67 >gi|320529134|ref|ZP_08030226.1| ribosome-associated GTPase EngA [Selenomonas artemidis F0399] gi|320138764|gb|EFW30654.1| ribosome-associated GTPase EngA [Selenomonas artemidis F0399] Length = 441 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 35/86 (40%), Positives = 52/86 (60%), Gaps = 3/86 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--E 279 + ++G N GKS+LFN + KK V+IV D+PG TRD + +D + + I DT GI E Sbjct: 6 VAVVGRPNVGKSTLFNQIGKKRVSIVDDMPGVTRDRIYMDAEWLNHEFTIIDTGGIEFDE 65 Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305 +D I+ + + L +E AD+IL L Sbjct: 66 SDHIL-RSMRSQAELAMEEADVILFL 90 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/96 (35%), Positives = 55/96 (57%), Gaps = 5/96 (5%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKSSL N L ++ IV+D+PGTTRD + +G + DTAG+R Sbjct: 179 IAVVGRPNVGKSSLVNRLLGEERVIVSDVPGTTRDAIDTHFTRDGAKYLLIDTAGMRRKG 238 Query: 282 DI---VEKEGIKRTFLEVENADLILLLKEINSKKEI 314 I VE+ + R+ ++ A ++L++ IN+ + I Sbjct: 239 KITLPVERYSVMRSLRAIDRAGVVLMV--INAAEGI 272 >gi|292806522|gb|ADE42391.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQISDLIL 90 >gi|197104999|ref|YP_002130376.1| GTP-binding protein [Phenylobacterium zucineum HLK1] gi|196478419|gb|ACG77947.1| GTP-binding protein [Phenylobacterium zucineum HLK1] Length = 509 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 51/179 (28%), Positives = 82/179 (45%), Gaps = 32/179 (17%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I I+G NAGKS+L N L +D + G TRD + +D + EG +++ DTAG+R Sbjct: 181 RIAIVGRPNAGKSTLVNRLIGEDRLLTGPEAGITRDAIPVDWEWEGRPIRLVDTAGLRRK 240 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNID--------FIFIGTKS 329 + +EK + T + A+++LL+ + EI + D +F+ TK Sbjct: 241 AKVQEKLEKLSTQDTIRAITFAEVVLLVMDATHPFEIQDLQIADLCEREGRGLVFVLTKW 300 Query: 330 DLY-------STYTEEYDHL-----------ISSFTGEGLEELIN---KIKSILSNKFK 367 DL + TEE L +S+ TG G++ L+ K+ S K K Sbjct: 301 DLVEEPQAVLAEITEEAYRLLPQVKGSPIVALSAETGRGMDRLMPAVLKVHGDWSTKVK 359 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 44/116 (37%), Positives = 63/116 (54%), Gaps = 14/116 (12%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV-----LTIDLDLEGYLVKISDTA 275 K+ I+G N GKS+LFN LA + +AIV D PG TRD DLDLE + DTA Sbjct: 4 KLAIVGRPNVGKSTLFNRLAGRKLAIVDDRPGVTRDRRFGTGRLGDLDLE-----LIDTA 58 Query: 276 GIRE-TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSD 330 G + TD+ +E +T V+ D+ L + I+S++ ++ P + F I K D Sbjct: 59 GFEDVTDESLEARMRAQTERAVDECDVALFV--IDSREGVT-PADRIFAEILRKRD 111 >gi|122702655|emb|CAL88517.1| GTPase [Helicobacter pylori] Length = 170 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIVLNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|118588128|ref|ZP_01545538.1| GTP-binding protein EngA [Stappia aggregata IAM 12614] gi|118439750|gb|EAV46381.1| GTP-binding protein EngA [Stappia aggregata IAM 12614] Length = 473 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 75/159 (47%), Gaps = 18/159 (11%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G + I+G N GKS+LFN L K +A+V D PG TRD D L I DTAG+ Sbjct: 2 GATVAIIGRPNVGKSTLFNRLVGKRLALVDDTPGVTRDRRPGDARLGDLRFTIIDTAGLE 61 Query: 279 ETD-DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKS 329 + D + +E ++T +E AD +L + + + E++ I + K+ Sbjct: 62 DADKESLEGRMRRQTEEAIETADAVLFVIDARAGVTPLDAHFAEVARKTTRPVILLANKA 121 Query: 330 D-------LYSTYTEEYDH--LISSFTGEGLEELINKIK 359 + LY +Y+ IS+ GEGL +L + +K Sbjct: 122 EGRAGESGLYESYSLGLGDPIAISAEHGEGLADLYDALK 160 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 38/66 (57%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G NAGKS+L N + +D + G TRD +++D +K+ DTAGIR+ Sbjct: 204 RVAIVGRPNAGKSTLINRMLGEDRMLTGPEAGITRDSISVDWVWRDRHIKLFDTAGIRKK 263 Query: 281 DDIVEK 286 + EK Sbjct: 264 ARVQEK 269 >gi|120610115|ref|YP_969793.1| GTP-binding protein EngA [Acidovorax citrulli AAC00-1] gi|166224298|sp|A1TM31|DER_ACIAC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|120588579|gb|ABM32019.1| small GTP-binding protein [Acidovorax citrulli AAC00-1] Length = 447 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 28/88 (31%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ + G N GKS+L N ++ + D+PGTTRD +++ + G ++ DTAG+R Sbjct: 181 RLAVAGRPNVGKSTLINTWLGEERLVAFDMPGTTRDAISVPFERNGQQFELIDTAGLRRK 240 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +EK + +T +E+A+++LLL Sbjct: 241 GKVFEAIEKFSVVKTLQAIESANVVLLL 268 Score = 43.9 bits (102), Expect = 0.048, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 I ++G N GKS+LFN L K AIV D G TRD + L + + DT G + Sbjct: 5 IALVGRPNVGKSTLFNRLTKSRDAIVADFAGLTRDRHYGNGKLGKHEYIVIDTGGFEPDA 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 + +E K+T V AD+++ + Sbjct: 65 SSGIYREMAKQTQQAVAEADVVIFV 89 >gi|239815182|ref|YP_002944092.1| GTP-binding protein EngA [Variovorax paradoxus S110] gi|259645888|sp|C5CXH0|DER_VARPS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|239801759|gb|ACS18826.1| small GTP-binding protein [Variovorax paradoxus S110] Length = 447 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ + G N GKS+L N ++ + D+PGTTRD +++ + G ++ DTAG+R Sbjct: 182 KLAVAGRPNVGKSTLINTWLGEERLVAFDLPGTTRDAISVPFERNGQRFELIDTAGLRRK 241 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +EK + +T +E+A ++LLL Sbjct: 242 GKVFEAIEKFSVVKTLQAIESASVVLLL 269 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + ++G N GKS+LFN L + AIV D G TRD + L + + DT G + Sbjct: 5 VALVGRPNVGKSTLFNRLTQTRDAIVADFAGLTRDRHYGNGRLGKHEFIVIDTGGFEPDA 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 + KE K+T V AD+++ + Sbjct: 65 GSGIYKEMAKQTRQAVAEADVVIFV 89 >gi|213155967|ref|YP_002318012.1| small GTP-binding protein [Acinetobacter baumannii AB0057] gi|301346486|ref|ZP_07227227.1| GTP-binding protein EngA [Acinetobacter baumannii AB056] gi|301594209|ref|ZP_07239217.1| GTP-binding protein EngA [Acinetobacter baumannii AB059] gi|254783128|sp|B7I5H1|DER_ACIB5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|213055127|gb|ACJ40029.1| small GTP-binding protein [Acinetobacter baumannii AB0057] Length = 469 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 50/84 (59%), Gaps = 3/84 (3%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G ++ I+G N GKS+L N L +D + D PGTTRD + I + EG + DTAG+R Sbjct: 176 GLRLAIIGRPNVGKSTLVNRLLGEDRVVAFDQPGTTRDSIYIPFEREGRKYTLIDTAGVR 235 Query: 279 ---ETDDIVEKEGIKRTFLEVENA 299 + D+++EK I +T +++A Sbjct: 236 RKGKVDEMIEKFSIVKTLQAMKDA 259 Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 44/84 (52%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN + K A+V D G TRD D + + DT GI E++ Sbjct: 5 IALIGRPNVGKSTLFNQITKSRDALVADFAGLTRDRKYGDATYQNKSFIVVDTGGIGESE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ +++ + AD+I+ + Sbjct: 65 CGIDNYMAEQSKTAINEADIIIFV 88 >gi|169797239|ref|YP_001715032.1| GTP-binding protein EngA [Acinetobacter baumannii AYE] gi|184156836|ref|YP_001845175.1| GTP-binding protein EngA [Acinetobacter baumannii ACICU] gi|215484680|ref|YP_002326915.1| small GTP-binding domain protein [Acinetobacter baumannii AB307-0294] gi|260556121|ref|ZP_05828340.1| ribosome-associated GTPase EngA [Acinetobacter baumannii ATCC 19606] gi|301509976|ref|ZP_07235213.1| GTP-binding protein EngA [Acinetobacter baumannii AB058] gi|332851256|ref|ZP_08433329.1| ribosome biogenesis GTPase Der [Acinetobacter baumannii 6013150] gi|332866125|ref|ZP_08436840.1| ribosome biogenesis GTPase Der [Acinetobacter baumannii 6013113] gi|332873250|ref|ZP_08441207.1| ribosome biogenesis GTPase Der [Acinetobacter baumannii 6014059] gi|254783127|sp|B7H065|DER_ACIB3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|254783129|sp|B2I3F0|DER_ACIBC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|254783131|sp|B0V4V6|DER_ACIBY RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|254783285|sp|A3M215|DER_ACIBT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|169150166|emb|CAM88060.1| putative GTP-binding protein EngA [Acinetobacter baumannii AYE] gi|183208430|gb|ACC55828.1| predicted GTPase [Acinetobacter baumannii ACICU] gi|193076314|gb|ABO10959.2| putative GTP-binding protein EngA [Acinetobacter baumannii ATCC 17978] gi|213986103|gb|ACJ56402.1| small GTP-binding domain protein [Acinetobacter baumannii AB307-0294] gi|260410176|gb|EEX03475.1| ribosome-associated GTPase EngA [Acinetobacter baumannii ATCC 19606] gi|322506727|gb|ADX02181.1| engA [Acinetobacter baumannii 1656-2] gi|323516601|gb|ADX90982.1| GTP-binding protein EngA [Acinetobacter baumannii TCDC-AB0715] gi|332730136|gb|EGJ61463.1| ribosome biogenesis GTPase Der [Acinetobacter baumannii 6013150] gi|332734766|gb|EGJ65860.1| ribosome biogenesis GTPase Der [Acinetobacter baumannii 6013113] gi|332738762|gb|EGJ69632.1| ribosome biogenesis GTPase Der [Acinetobacter baumannii 6014059] Length = 469 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 50/84 (59%), Gaps = 3/84 (3%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G ++ I+G N GKS+L N L +D + D PGTTRD + I + EG + DTAG+R Sbjct: 176 GLRLAIIGRPNVGKSTLVNRLLGEDRVVAFDQPGTTRDSIYIPFEREGRKYTLIDTAGVR 235 Query: 279 ---ETDDIVEKEGIKRTFLEVENA 299 + D+++EK I +T +++A Sbjct: 236 RKGKVDEMIEKFSIVKTLQAMKDA 259 Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust. Identities = 17/35 (48%), Positives = 22/35 (62%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 I ++G N GKS+LFN + K A+V D G TRD Sbjct: 5 IALIGRPNVGKSTLFNQITKSRDALVADFAGLTRD 39 >gi|163749553|ref|ZP_02156800.1| GTP-binding protein EngA [Shewanella benthica KT99] gi|161330663|gb|EDQ01600.1| GTP-binding protein EngA [Shewanella benthica KT99] Length = 492 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 49/89 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD L GY + DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRASLSGYEFIVVDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310 + +E +++ +E AD++L L + + Sbjct: 65 EGIEVHMAQQSLAAIEEADVVLFLTDARA 93 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 61/98 (62%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 K+ I+G N GKS+L N + ++ +V D PGTTRD + I + EG + DTAG+R Sbjct: 201 KLAIIGKPNVGKSTLINRILGEERVVVYDSPGTTRDSIYIPMVREGREYVLIDTAGVRRR 260 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + ++ VEK + +T VE+ +++LL+ I++++ I+ Sbjct: 261 SKVNETVEKFSVIKTLKAVEDCNVVLLI--IDAREGIT 296 >gi|122702653|emb|CAL88516.1| GTPase [Helicobacter pylori] Length = 170 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIILNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|4467653|emb|CAB37778.1| GTP-binding protein homologue [Helicobacter pylori] Length = 170 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 49/82 (59%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V+ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVECLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|148259762|ref|YP_001233889.1| GTP-binding protein EngA [Acidiphilium cryptum JF-5] gi|146401443|gb|ABQ29970.1| tRNA modification GTPase trmE [Acidiphilium cryptum JF-5] Length = 451 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 35/86 (40%), Positives = 48/86 (55%), Gaps = 1/86 (1%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I G N GKS+LFN LA K +A+V D PG TRD +L G V++ DTAG+ E Sbjct: 10 RVAICGRPNVGKSTLFNRLAGKRIALVADEPGVTRDRKEAWGELAGVKVQLIDTAGLEEA 69 Query: 281 -DDIVEKEGIKRTFLEVENADLILLL 305 D + T V+ ADL+L + Sbjct: 70 PPDTLPGRMRASTGTAVDEADLVLFV 95 Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 4/87 (4%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRET 280 + I+G NAGKS+L N L + I PG TRD + +L D G ++ DTAG+R Sbjct: 186 LAIVGRPNAGKSTLMNRLLGEQRVITGPEPGLTRDAIAAELTDSAGRRYRLFDTAGLRRR 245 Query: 281 DDI---VEKEGIKRTFLEVENADLILL 304 + +EK T ++ AD ++L Sbjct: 246 ARVEAGLEKLSTSSTIEALKFADTVVL 272 >gi|292806476|gb|ADE42368.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIVLNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|326316284|ref|YP_004233956.1| ribosome-associated GTPase EngA [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373120|gb|ADX45389.1| ribosome-associated GTPase EngA [Acidovorax avenae subsp. avenae ATCC 19860] Length = 447 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 28/88 (31%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ + G N GKS+L N ++ + D+PGTTRD +++ + G ++ DTAG+R Sbjct: 181 RLAVAGRPNVGKSTLINTWLGEERLVAFDMPGTTRDAISVPFERNGQQFELIDTAGLRRK 240 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +EK + +T +E+A+++LLL Sbjct: 241 GKVFEAIEKFSVVKTLQAIESANVVLLL 268 Score = 43.9 bits (102), Expect = 0.045, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 I ++G N GKS+LFN L K AIV D G TRD + L + + DT G + Sbjct: 5 IALVGRPNVGKSTLFNRLTKSRDAIVADFAGLTRDRHYGNGKLGKHEYIVIDTGGFEPDA 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 + +E K+T V AD+++ + Sbjct: 65 SSGIYREMAKQTQQAVAEADVVIFV 89 >gi|169634401|ref|YP_001708137.1| GTP-binding protein EngA [Acinetobacter baumannii SDF] gi|254783130|sp|B0VKR4|DER_ACIBS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|169153193|emb|CAP02283.1| putative GTP-binding protein EngA [Acinetobacter baumannii] Length = 469 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 50/84 (59%), Gaps = 3/84 (3%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G ++ I+G N GKS+L N L +D + D PGTTRD + I + EG + DTAG+R Sbjct: 176 GLRLAIIGRPNVGKSTLVNRLLGEDRVVAFDQPGTTRDSIYIPFEREGRKYTLIDTAGVR 235 Query: 279 ---ETDDIVEKEGIKRTFLEVENA 299 + D+++EK I +T +++A Sbjct: 236 RKGKVDEMIEKFSIVKTLQAMKDA 259 Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust. Identities = 17/35 (48%), Positives = 22/35 (62%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 I ++G N GKS+LFN + K A+V D G TRD Sbjct: 5 IALIGRPNVGKSTLFNQITKSRDALVADFAGLTRD 39 >gi|50313209|gb|AAT74552.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 333 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 11 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 70 ALLSKEIKALNLKAAQMSDLIL 91 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/109 (33%), Positives = 63/109 (57%), Gaps = 6/109 (5%) Query: 204 SSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD 263 ++ + + K EII+ G I+G N GKSSL NAL KK+ ++V+ + GTT D + + Sbjct: 189 NNALEENKEEEIIQVG----IIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETIL 244 Query: 264 LEGYLVKISDTAGIRETDDI--VEKEGIKRTFLEVENADLILLLKEINS 310 + + DTAGIR I +EK ++RT +E + + LL+ ++++ Sbjct: 245 IGDQKICFVDTAGIRHRGKILGIEKYALERTQKALEKSHIALLVLDVSA 293 >gi|18075778|emb|CAD11317.1| GTP-binding protein homologue [Helicobacter pylori] Length = 347 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 11 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 70 ALLSKEIKALNLKAAQMSDLIL 91 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/99 (36%), Positives = 58/99 (58%), Gaps = 6/99 (6%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273 EII+ G I+G N GKSSL NAL KK+ ++V+ + GTT D + + + + D Sbjct: 199 EIIQVG----IIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVD 254 Query: 274 TAGIRETDDI--VEKEGIKRTFLEVENADLILLLKEINS 310 TAGIR I +EK ++RT +E + + LL+ ++++ Sbjct: 255 TAGIRHRGKILGIEKYALERTQKALEKSHIALLVLDVSA 293 >gi|326403270|ref|YP_004283351.1| GTP-binding protein EngA [Acidiphilium multivorum AIU301] gi|325050131|dbj|BAJ80469.1| GTP-binding protein EngA [Acidiphilium multivorum AIU301] Length = 451 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 35/86 (40%), Positives = 48/86 (55%), Gaps = 1/86 (1%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I G N GKS+LFN LA K +A+V D PG TRD +L G V++ DTAG+ E Sbjct: 10 RVAICGRPNVGKSTLFNRLAGKRIALVADEPGVTRDRKEAWGELAGVKVQLIDTAGLEEA 69 Query: 281 -DDIVEKEGIKRTFLEVENADLILLL 305 D + T V+ ADL+L + Sbjct: 70 PPDTLPGRMRASTGTAVDEADLVLFV 95 Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 4/87 (4%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRET 280 + I+G NAGKS+L N L + I PG TRD + +L D G ++ DTAG+R Sbjct: 186 LAIVGRPNAGKSTLMNRLLGEQRVITGPEPGLTRDAIAAELTDSAGRRYRLFDTAGLRRR 245 Query: 281 DDI---VEKEGIKRTFLEVENADLILL 304 + +EK T ++ AD ++L Sbjct: 246 ARVEAGLEKLSTSSTIEALKFADTVVL 272 >gi|282848929|ref|ZP_06258319.1| ribosome-associated GTPase EngA [Veillonella parvula ATCC 17745] gi|282581434|gb|EFB86827.1| ribosome-associated GTPase EngA [Veillonella parvula ATCC 17745] Length = 444 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 35/87 (40%), Positives = 50/87 (57%), Gaps = 3/87 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKSSL NAL +D IV+D+ GTTRD + E + DTAG+R Sbjct: 181 VAIIGRPNVGKSSLTNALLGQDRVIVSDVAGTTRDSIDTYWTHENQKFVLIDTAGMRRKS 240 Query: 282 DI---VEKEGIKRTFLEVENADLILLL 305 I VE+ I R+ V+ AD+++L+ Sbjct: 241 KIEEAVERYSIVRSLRSVDRADIVVLV 267 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 3/87 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--- 278 + ++G N GKS+LFNA+ K ++IV DIPG TRD + D + + DT GI Sbjct: 6 VAVVGRPNVGKSTLFNAIVNKRISIVEDIPGVTRDRIYFDAEWLNREFTMIDTGGIEFIT 65 Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL 305 E ++ K + L +E AD+IL + Sbjct: 66 ENSHVIPKMMRLQAELAIEEADVILFV 92 >gi|254480079|ref|ZP_05093327.1| putative GTPase [marine gamma proteobacterium HTCC2148] gi|214039641|gb|EEB80300.1| putative GTPase [marine gamma proteobacterium HTCC2148] Length = 417 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 32/91 (35%), Positives = 53/91 (58%), Gaps = 3/91 (3%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 N ++ ++G N GKS+L N L +D +V D PGTTRD + ID + + DTAG+ Sbjct: 124 NSTRVAVVGRPNVGKSTLVNRLLGEDRVVVFDEPGTTRDSIYIDYQRDEQEYTLIDTAGV 183 Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLL 305 R ++ VEK I +T +++A +++L+ Sbjct: 184 RRRKNVKQTVEKFSIVKTLKAIDDAHVVILV 214 >gi|17932845|emb|CAD11319.1| GTP-binding protein homologue [Helicobacter pylori] Length = 347 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 11 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 70 ALLSKEIKALNLKAAQMSDLIL 91 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/99 (36%), Positives = 58/99 (58%), Gaps = 6/99 (6%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273 EII+ G I+G N GKSSL NAL KK+ ++V+ + GTT D + + + + D Sbjct: 199 EIIQVG----IIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVD 254 Query: 274 TAGIRETDDI--VEKEGIKRTFLEVENADLILLLKEINS 310 TAGIR I +EK ++RT +E + + LL+ ++++ Sbjct: 255 TAGIRHRGKILGIEKYALERTQKALEKSHIALLVLDVSA 293 >gi|258545523|ref|ZP_05705757.1| GTP-binding protein EngA [Cardiobacterium hominis ATCC 15826] gi|258519223|gb|EEV88082.1| GTP-binding protein EngA [Cardiobacterium hominis ATCC 15826] Length = 463 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 51/85 (60%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 + ++G N GKS+L+NAL + ++V+D PG TRD D L G +I DT G +RE Sbjct: 18 VALVGRPNVGKSTLYNALTRSRDSLVSDTPGLTRDRNYGDATLAGMPCRIVDTGGLLREE 77 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 +D +++ K+ VE AD+++ + Sbjct: 78 EDQIDRRVDKQARAAVEEADIVVFV 102 Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 32/91 (35%), Positives = 53/91 (58%), Gaps = 4/91 (4%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGI 277 G + ++G NAGKS+L N L ++ + + + GTTRD + I D +G + DTAGI Sbjct: 197 GIALAVIGRPNAGKSTLLNRLIGEERLVASPVAGTTRDAIAIPYEDAQGDRFTLIDTAGI 256 Query: 278 R---ETDDIVEKEGIKRTFLEVENADLILLL 305 R +D +EK I +T +E A++++L+ Sbjct: 257 RRKARVNDKIEKFSIVKTLDAIERANVVILM 287 >gi|292806458|gb|ADE42359.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDSAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|50313211|gb|AAT74553.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 332 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 11 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 69 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 70 ALLSKEIKALNLKAAQMSDLIL 91 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/109 (33%), Positives = 63/109 (57%), Gaps = 6/109 (5%) Query: 204 SSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD 263 ++ + + K EII+ G I+G N GKSSL NAL KK+ ++V+ + GTT D + + Sbjct: 189 NNALEENKEEEIIQVG----IIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETIL 244 Query: 264 LEGYLVKISDTAGIRETDDI--VEKEGIKRTFLEVENADLILLLKEINS 310 + + DTAGIR I +EK ++RT +E + + LL+ ++++ Sbjct: 245 IGDQKICFVDTAGIRHRGKILGIEKYALERTQKALEKSHIALLVLDVSA 293 >gi|296134487|ref|YP_003641734.1| small GTP-binding protein [Thermincola sp. JR] gi|296033065|gb|ADG83833.1| small GTP-binding protein [Thermincola potens JR] Length = 404 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 54/151 (35%), Positives = 80/151 (52%), Gaps = 22/151 (14%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTAGIRE 279 I I G+ NAGKSSL NAL +++A+V+D PGTT D + ++L G +V I DTAG+ + Sbjct: 12 IAIFGNRNAGKSSLINALTGQNLAVVSDYPGTTTDPVYKSMELLPLGPVVLI-DTAGLDD 70 Query: 280 TDDIVE-KEGIKRTFLEVENADLILLLKEINSKKEIS-------FPKNIDFIFIGTKSD- 330 T D+ E ++G +T + ADL L+L + + K I I + TK D Sbjct: 71 TGDLGELRKG--KTLEVLRKADLALVLVDAGCSNQSDEDLLHKIMEKKIPIIGVLTKIDK 128 Query: 331 -------LYSTYTEEYDHLISSFTGEGLEEL 354 L+S + +SS TG+G+ EL Sbjct: 129 FGVPEDNLFSRKGIPWTP-VSSKTGQGIHEL 158 >gi|294791776|ref|ZP_06756924.1| ribosome-associated GTPase EngA [Veillonella sp. 6_1_27] gi|294793637|ref|ZP_06758774.1| ribosome-associated GTPase EngA [Veillonella sp. 3_1_44] gi|294455207|gb|EFG23579.1| ribosome-associated GTPase EngA [Veillonella sp. 3_1_44] gi|294457006|gb|EFG25368.1| ribosome-associated GTPase EngA [Veillonella sp. 6_1_27] Length = 444 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 35/87 (40%), Positives = 50/87 (57%), Gaps = 3/87 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKSSL NAL +D IV+D+ GTTRD + E + DTAG+R Sbjct: 181 VAIIGRPNVGKSSLTNALLGQDRVIVSDVAGTTRDSIDTYWTHENQKFVLIDTAGMRRKS 240 Query: 282 DI---VEKEGIKRTFLEVENADLILLL 305 I VE+ I R+ V+ AD+++L+ Sbjct: 241 KIEEAVERYSIVRSLRSVDRADIVVLV 267 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 3/87 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFNA+ K ++IV DIPG TRD + D + + DT GI Sbjct: 6 VAVVGRPNVGKSTLFNAIVNKRISIVEDIPGVTRDRIYFDAEWLNREFTMIDTGGIEFIT 65 Query: 282 D---IVEKEGIKRTFLEVENADLILLL 305 D ++ K + L +E AD+IL + Sbjct: 66 DNSHVIPKMMRLQAELAIEEADVILFV 92 >gi|293400643|ref|ZP_06644788.1| ribosome-associated GTPase EngA [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305669|gb|EFE46913.1| ribosome-associated GTPase EngA [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 438 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G N GKSSL NAL ++ IV++I GTTRD + EG + DTAGIR+ Sbjct: 178 RFCVIGRPNVGKSSLVNALLNQERVIVSNIEGTTRDAIDTPFKREGKEYVVIDTAGIRKR 237 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +EK + R +E +D++L++ Sbjct: 238 GKVYENIEKYSVLRAMSAIERSDVVLVV 265 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 2/94 (2%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN + + +IV D PG TRD + + ++ DT GI+ D Sbjct: 8 VAIVGRPNVGKSTIFNRIIGERKSIVEDTPGVTRDRIYGKAEWLTKEFRVIDTGGIQLAD 67 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 +E + + ++ AD IL + +N K+ I+ Sbjct: 68 QPFREEINMQVEIAIDEADTILFV--VNGKEGIT 99 >gi|268594476|ref|ZP_06128643.1| GTP-binding protein engA [Neisseria gonorrhoeae 35/02] gi|268596471|ref|ZP_06130638.1| GTP-binding protein engA [Neisseria gonorrhoeae FA19] gi|291044231|ref|ZP_06569940.1| GTP-binding protein engA [Neisseria gonorrhoeae DGI2] gi|293399430|ref|ZP_06643583.1| ribosome-associated GTPase EngA [Neisseria gonorrhoeae F62] gi|268547865|gb|EEZ43283.1| GTP-binding protein engA [Neisseria gonorrhoeae 35/02] gi|268550259|gb|EEZ45278.1| GTP-binding protein engA [Neisseria gonorrhoeae FA19] gi|291011125|gb|EFE03121.1| GTP-binding protein engA [Neisseria gonorrhoeae DGI2] gi|291609999|gb|EFF39121.1| ribosome-associated GTPase EngA [Neisseria gonorrhoeae F62] Length = 502 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 34/96 (35%), Positives = 58/96 (60%), Gaps = 5/96 (5%) Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---E 279 ++G N GKS+L NA+ + I D+ GTTRD + ID + EG I DTAG+R + Sbjct: 196 AVIGRPNVGKSTLVNAILGEKRVIAFDMAGTTRDSIHIDFEREGKPFTIIDTAGVRRRGK 255 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D+ VEK + + VE A++ +L+ ++++++I+ Sbjct: 256 VDEAVEKFSVIKAMQAVEAANVAVLV--LDAQQDIA 289 Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280 I ++G N GKS+LFN L + A+V D+PG TRD + + DT G Sbjct: 22 IALIGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYFVIDTGGFEPVV 81 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 D + E K+T V+ AD ++ L Sbjct: 82 DSGILHEMAKQTLQAVDEADAVVFL 106 >gi|242255844|gb|ACS88906.1| GTPase [Helicobacter pylori] Length = 170 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKVLNLKAAQMSDLIL 90 >gi|223041036|ref|ZP_03611294.1| ribosome-associated GTPase EngA [Campylobacter rectus RM3267] gi|222877708|gb|EEF12831.1| ribosome-associated GTPase EngA [Campylobacter rectus RM3267] Length = 467 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 36/91 (39%), Positives = 53/91 (58%), Gaps = 2/91 (2%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R ++ I+G N GKSSL NAL K+ A+V+D+ GTT D + E + + DTAG Sbjct: 197 RKNIQVGIIGRVNVGKSSLLNALVKESRAVVSDVAGTTIDPVNETFVYEDRIFEFVDTAG 256 Query: 277 IRETDDI--VEKEGIKRTFLEVENADLILLL 305 IR+ I +E+ + RT +E AD+ LL+ Sbjct: 257 IRKRGKIEGIERYALNRTESALELADIALLV 287 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 50/85 (58%), Gaps = 1/85 (1%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI+++G N GKSSLFN LA + +AI +D+ GTTRD +++ + D+ G+ ++ Sbjct: 3 KIILVGKPNVGKSSLFNRLAGRRIAITSDVSGTTRDTNKTIIEIYDKSCVLIDSGGLDDS 62 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 ++ K +T E ++D I+ + Sbjct: 63 SELF-KNVKAKTLAEARSSDAIIFM 86 >gi|213418595|ref|ZP_03351661.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 320 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 62/98 (63%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ + + DTAG+R Sbjct: 204 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRKR 263 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + D VEK + +T +E+A+++LL+ I++++ IS Sbjct: 264 GKITDAVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 299 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 D VE +++ L +E AD++L + Sbjct: 65 DGVETRMAEQSLLAIEEADVVLFM 88 >gi|212634303|ref|YP_002310828.1| GTP-binding protein EngA [Shewanella piezotolerans WP3] gi|226741196|sp|B8CKR5|DER_SHEPW RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|212555787|gb|ACJ28241.1| GTP-binding protein EngA [Shewanella piezotolerans WP3] Length = 490 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 60/98 (61%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D PGTTRD + I ++ EG + DTAG+R Sbjct: 201 KLAIIGKPNVGKSTLTNRILGEERVVVYDEPGTTRDSIYIPMEREGREYVLIDTAGVRRR 260 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + VEK + +T VE+ +++LL+ I++++ I+ Sbjct: 261 SKVHETVEKFSVIKTLKAVEDCNVVLLI--IDAREGIA 296 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 49/89 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD L GY + DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAHLAGYEFIVVDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310 + +E +++ +E AD++L + + + Sbjct: 65 EGIETRMAEQSLAAIEEADVVLFMTDARA 93 >gi|220935213|ref|YP_002514112.1| GTP-binding protein EngA [Thioalkalivibrio sp. HL-EbGR7] gi|254783176|sp|B8GTN1|DER_THISH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|219996523|gb|ACL73125.1| GTP-binding protein EngA [Thioalkalivibrio sp. HL-EbGR7] Length = 464 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 31/100 (31%), Positives = 60/100 (60%), Gaps = 5/100 (5%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G +I +G NAGKS+L N + ++ + T+IPGTTRD + I + +G + DTAG+R Sbjct: 177 GIRIAFVGRPNAGKSTLINRILGEERVVATEIPGTTRDSIFIPFERDGQQYTLIDTAGVR 236 Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + +EK + +T ++ A +++++ +++++ IS Sbjct: 237 RRSRVHEAIEKFSVVKTLQAIDAAHVVVMV--LDAREGIS 274 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 45/84 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L + A+V D PG TRD + G+ + DT G+ Sbjct: 5 IALVGRPNVGKSTLFNQLTRSRDALVADFPGLTRDRQYGPGRVGGFPYMVVDTGGLSGEA 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + ++ ++T ++ +D++L L Sbjct: 65 ETLDNLMARQTQQAIDESDVVLFL 88 >gi|122700637|emb|CAL87907.1| GTPase [Helicobacter pylori] Length = 170 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 49/82 (59%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE +DLIL Sbjct: 69 ALLSKEIKALNLKAARMSDLIL 90 >gi|319760649|ref|YP_004124587.1| GTP-binding protein engA [Candidatus Blochmannia vafer str. BVAF] gi|318039363|gb|ADV33913.1| GTP-binding protein engA [Candidatus Blochmannia vafer str. BVAF] Length = 478 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 33/97 (34%), Positives = 56/97 (57%), Gaps = 5/97 (5%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 N K+ ++G N+GKS+ N + ++ I + IPGTTRD + I + + DTAGI Sbjct: 202 NSIKLAVVGRPNSGKSTFINYVVQESRVITSSIPGTTRDSVYIPIICYNQKYMLIDTAGI 261 Query: 278 RE-----TDDIVEKEGIKRTFLEVENADLILLLKEIN 309 R D++ E+ + +TF +++A +ILL+ +IN Sbjct: 262 RRGNNKYIDNLPERISVLKTFQVIKDAHVILLIIDIN 298 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 6/107 (5%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 +V++G N GKS+LFN L + A+V D G TRD + + I DT G+ E+ Sbjct: 9 VVLVGQKNVGKSTLFNRLTQNYRALVADYFGVTRDRQYGYIQHKNDKCIIVDTGGVDESS 68 Query: 282 DIVEKEGIK-RTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGT 327 D + I +T L + AD++L + +N + ++ +ID+ IG Sbjct: 69 DSFLQNAINYQTNLAIREADIVLFV--VNGR---AYESSIDYNIIGN 110 >gi|229496957|ref|ZP_04390662.1| ribosome-associated GTPase EngA [Porphyromonas endodontalis ATCC 35406] gi|229316059|gb|EEN81987.1| ribosome-associated GTPase EngA [Porphyromonas endodontalis ATCC 35406] Length = 436 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 78/165 (47%), Gaps = 18/165 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 + I+G N GKS+LFN L AIVT+I GTTRD + G+ I DT G + + Sbjct: 5 VAIVGRPNVGKSTLFNRLVGSRQAIVTEISGTTRDRQYGHTNWTGHEFSIVDTGGWVSGS 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI----------------NSKKEISFPKN-IDFI 323 +D+ E E K+ + +E AD+IL + ++ +KK I N D Sbjct: 65 EDVFESEINKQVQIAIEEADVILFVVDVMAGMTDLDREVAGLLRRAKKPILLVANKADTF 124 Query: 324 FIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKK 368 IG +S + + IS+ G G +L++ I + L + ++ Sbjct: 125 EIGYQSAEFYALGLGDPYAISAINGSGTGDLLDAIVNSLPEQHER 169 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 30/91 (32%), Positives = 54/91 (59%), Gaps = 3/91 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G NAGKSSL NA ++ IVT++ GTTRD + + + G+ + DTAGIR+ Sbjct: 177 RFAVVGRPNAGKSSLINAFIGEERNIVTNVAGTTRDSIYTEYNKFGFSFYLVDTAGIRKR 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEI 308 + +E + R+ +EN+D+ + + ++ Sbjct: 237 GKVQEDLEYYSVIRSIRAIENSDICIAMIDV 267 >gi|170725905|ref|YP_001759931.1| GTP-binding protein EngA [Shewanella woodyi ATCC 51908] gi|238688689|sp|B1KLB1|DER_SHEWM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|169811252|gb|ACA85836.1| small GTP-binding protein [Shewanella woodyi ATCC 51908] Length = 488 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 45/182 (24%), Positives = 86/182 (47%), Gaps = 31/182 (17%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 K+ ++G N GKS+L N + ++ +V D PGTTRD + I ++ +G + DTAG+R Sbjct: 201 KLAVIGKPNVGKSTLTNRILGEERVVVYDAPGTTRDSIYIPMERDGREYVLIDTAGVRRR 260 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS--------FPKNIDFIFI---- 325 + ++ VEK + +T VE+ +++LL+ +++++ I+ F N + Sbjct: 261 SKVNETVEKFSVIKTLKAVEDCNVVLLI--VDAREGIAEQDLGLLGFALNAGRALVIAVN 318 Query: 326 ---GTKSDLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPF 371 G D+ E D H IS+ G G+ L ++ + +++ Sbjct: 319 KWDGIDQDIKDRVKSELDRRLGFIDFARIHFISALHGTGVGHLFESVQEAYESATRRVST 378 Query: 372 SI 373 S+ Sbjct: 379 SM 380 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 49/89 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD L GY + DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADYPGLTRDRKYGRAHLSGYEFIVVDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310 + +E +++ +E AD++L L + + Sbjct: 65 EGIETHMAEQSMAAIEEADVVLFLTDARA 93 >gi|292806514|gb|ADE42387.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 49/82 (59%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 + KE + +DLIL Sbjct: 69 ALWSKEIKALNLKAAQMSDLIL 90 >gi|292806424|gb|ADE42342.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMVK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|295689707|ref|YP_003593400.1| ribosome-associated GTPase EngA [Caulobacter segnis ATCC 21756] gi|295431610|gb|ADG10782.1| ribosome-associated GTPase EngA [Caulobacter segnis ATCC 21756] Length = 588 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/86 (43%), Positives = 50/86 (58%), Gaps = 1/86 (1%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE- 279 K+ I+G N GKS+LFN LA K +AIV D PG TRD D L +++ DTAG + Sbjct: 4 KLAIVGRPNVGKSTLFNRLAGKKLAIVDDQPGVTRDRRYADGRLGDLDLQLIDTAGFEDV 63 Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305 D+ +E +T L +E ADL L + Sbjct: 64 ADESLEARMRAQTELAIEEADLSLFI 89 Score = 43.9 bits (102), Expect = 0.055, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 37/66 (56%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G NAGKS+L N L + + G TRD +++D V++ DTAG+R+ Sbjct: 180 RLAIVGRPNAGKSTLINRLIGEQRLLTGPEAGITRDSISVDWVWGDKKVRLVDTAGLRKK 239 Query: 281 DDIVEK 286 + EK Sbjct: 240 AKVQEK 245 >gi|330752592|emb|CBL87538.1| GTP-binding protein [uncultured Flavobacteria bacterium] Length = 447 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 52/192 (27%), Positives = 89/192 (46%), Gaps = 32/192 (16%) Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270 K+G+ + N ++G NAGKSS NA+ K+ IVT I GTTRD + G+ Sbjct: 182 KIGDELPN---FAVVGRPNAGKSSFINAIIGKERNIVTKIAGTTRDSINSRYKRFGFDFN 238 Query: 271 ISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL--------KEINSKKEISFPKN 319 + DTAGIR+ I +E I R+ +E AD+ +L+ ++ + ++ N Sbjct: 239 LIDTAGIRKKTKIKEDIEFYSIMRSVRSIEYADVCILIVDATRGFDGQVQNIFWLTHRNN 298 Query: 320 IDFIFIGTKSDLY---STYTEEYD---------------HLISSFTGEGLEELINKIKSI 361 + + K DL+ S T+EY+ +SS T + + + ++ + Sbjct: 299 KGIVILVNKWDLFEKSSNATKEYEIQIREAISPFKDVPIVFVSSLTKQRIYKAVSTAIEV 358 Query: 362 LSNKFKKLPFSI 373 N+ +K+P I Sbjct: 359 FKNRKRKIPTKI 370 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 54/183 (29%), Positives = 85/183 (46%), Gaps = 20/183 (10%) Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 L +I G + I+G N GKS+ FN + +K AIV G TRD D G + Sbjct: 8 LQQINMMGGIVAIVGRPNVGKSTFFNRMVQKRDAIVDSQSGVTRDRHYGKSDWNGRGFTL 67 Query: 272 SDTAGIRE-TDDIVEKEGIKRTFLEVENADLILLLKEI----------------NSKKEI 314 DT G E ++D+ +KE K+ L VE AD I+ + ++ S K I Sbjct: 68 IDTGGYLENSEDVFQKEIDKQVSLAVEEADAIIFIVDVIDGVTGMDQNIAKLLRRSSKPI 127 Query: 315 SFPKN-IDFI-FIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372 N +D S+ YS + + + ISS +G G EL++ + S + ++ KK+ Sbjct: 128 YLAINKVDNTSRTQMTSEFYSLGYKNF-YCISSVSGSGTGELLDDLISQMPDEEKKIGDE 186 Query: 373 IPS 375 +P+ Sbjct: 187 LPN 189 >gi|160882378|ref|ZP_02063381.1| hypothetical protein BACOVA_00327 [Bacteroides ovatus ATCC 8483] gi|237719052|ref|ZP_04549533.1| GTP-binding protein EngA [Bacteroides sp. 2_2_4] gi|260172013|ref|ZP_05758425.1| GTP-binding protein EngA [Bacteroides sp. D2] gi|299148136|ref|ZP_07041198.1| ribosome-associated GTPase EngA [Bacteroides sp. 3_1_23] gi|315920326|ref|ZP_07916566.1| conserved hypothetical protein [Bacteroides sp. D2] gi|156112191|gb|EDO13936.1| hypothetical protein BACOVA_00327 [Bacteroides ovatus ATCC 8483] gi|229451431|gb|EEO57222.1| GTP-binding protein EngA [Bacteroides sp. 2_2_4] gi|298512897|gb|EFI36784.1| ribosome-associated GTPase EngA [Bacteroides sp. 3_1_23] gi|313694201|gb|EFS31036.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 437 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 54/168 (32%), Positives = 79/168 (47%), Gaps = 22/168 (13%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277 G + I+G N GKS+LFN L K AIV + GTTRD + G + DT G + Sbjct: 2 GNLVAIVGRPNVGKSTLFNRLTKTRQAIVNEEAGTTRDRQYGKSEWLGREFSVVDTGGWV 61 Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEI-NSKKEISFP-------KNIDFIFIGTKS 329 +DD+ E+E K+ L VE AD+IL + ++ N ++ N I + K+ Sbjct: 62 VNSDDVFEEEIRKQVLLAVEEADVILFVVDVMNGVTDLDMQVAAILRRANSPVIMVANKT 121 Query: 330 ---DLYSTYTEEYD------HLISSFTGEGLEELINKIKSILSNKFKK 368 DL E Y + +S+ TG G +L++ I S FKK Sbjct: 122 DNHDLQYNAPEFYKLGLGDPYCVSAMTGSGTGDLMDLIVS----NFKK 165 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G NAGKSS+ NA ++ IVT+I GTTRD + + G+ + DTAGIR+ Sbjct: 177 RFAVVGRPNAGKSSIVNAFIGEERNIVTEIAGTTRDSIYTRYNKFGFDFYLVDTAGIRKK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + + +E + R+ +E +D+ +L+ Sbjct: 237 NKVNEDLEYYSVVRSIRSIEGSDVCILM 264 >gi|122702745|emb|CAL88562.1| GTPase [Helicobacter pylori] Length = 170 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 49/82 (59%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE +DLIL Sbjct: 69 ALLSKEIKALNLKAARMSDLIL 90 >gi|254493337|ref|ZP_05106508.1| GTP-binding protein engA [Neisseria gonorrhoeae 1291] gi|268598604|ref|ZP_06132771.1| GTP-binding protein engA [Neisseria gonorrhoeae MS11] gi|268600957|ref|ZP_06135124.1| GTP-binding protein engA [Neisseria gonorrhoeae PID18] gi|268603264|ref|ZP_06137431.1| GTP-binding protein engA [Neisseria gonorrhoeae PID1] gi|268681744|ref|ZP_06148606.1| GTP-binding protein engA [Neisseria gonorrhoeae PID332] gi|268683971|ref|ZP_06150833.1| GTP-binding protein engA [Neisseria gonorrhoeae SK-92-679] gi|268686216|ref|ZP_06153078.1| GTP-binding protein engA [Neisseria gonorrhoeae SK-93-1035] gi|226512377|gb|EEH61722.1| GTP-binding protein engA [Neisseria gonorrhoeae 1291] gi|268582735|gb|EEZ47411.1| GTP-binding protein engA [Neisseria gonorrhoeae MS11] gi|268585088|gb|EEZ49764.1| GTP-binding protein engA [Neisseria gonorrhoeae PID18] gi|268587395|gb|EEZ52071.1| GTP-binding protein engA [Neisseria gonorrhoeae PID1] gi|268622028|gb|EEZ54428.1| GTP-binding protein engA [Neisseria gonorrhoeae PID332] gi|268624255|gb|EEZ56655.1| GTP-binding protein engA [Neisseria gonorrhoeae SK-92-679] gi|268626500|gb|EEZ58900.1| GTP-binding protein engA [Neisseria gonorrhoeae SK-93-1035] Length = 500 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/96 (35%), Positives = 58/96 (60%), Gaps = 5/96 (5%) Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---E 279 ++G N GKS+L NA+ + I D+ GTTRD + ID + EG I DTAG+R + Sbjct: 194 AVIGRPNVGKSTLVNAILGEKRVIAFDMAGTTRDSIHIDFEREGKPFTIIDTAGVRRRGK 253 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D+ VEK + + VE A++ +L+ ++++++I+ Sbjct: 254 VDEAVEKFSVIKAMQAVEAANVAVLV--LDAQQDIA 287 Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280 I ++G N GKS+LFN L + A+V D+PG TRD + + DT G Sbjct: 20 IALIGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYFVIDTGGFEPVV 79 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 D + E K+T V+ AD ++ L Sbjct: 80 DSGILHEMAKQTLQAVDEADAVVFL 104 >gi|149183701|ref|ZP_01862112.1| GTP-binding protein EngA [Bacillus sp. SG-1] gi|148848583|gb|EDL62822.1| GTP-binding protein EngA [Bacillus sp. SG-1] Length = 436 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K ++G N GKSSL NAL +D IV+++ GTTRD + L ++G I DTAG+R+ Sbjct: 177 KFSLIGRPNVGKSSLVNALLGEDRVIVSNVAGTTRDAIDSKLKVDGQEYVIIDTAGMRKK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + EK + R +E +D++L++ Sbjct: 237 GKVYESTEKYSVLRALRAIERSDVVLVV 264 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN + + ++IV D+PG TRD + D + I DT GI D Sbjct: 6 VAIVGRPNVGKSTIFNRIVGERISIVEDVPGVTRDRIYSSADWLTHDFNIIDTGGIEIGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + ++ ++ + ++ AD+I+ L Sbjct: 66 EPFLEQIRQQAEIAIDEADVIVFL 89 >gi|53802988|ref|YP_115285.1| GTPase family protein [Methylococcus capsulatus str. Bath] gi|81823578|sp|Q603B5|DER_METCA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|53756749|gb|AAU91040.1| GTPase family protein [Methylococcus capsulatus str. Bath] Length = 463 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/100 (35%), Positives = 55/100 (55%), Gaps = 4/100 (4%) Query: 210 GKLGEI-IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL 268 G+ GE G +I ++G N GKS+L N + ++ +V D PGTTRD + I + G Sbjct: 166 GETGETEAEGGIRIAVVGRPNVGKSTLVNRILGEERVVVYDQPGTTRDSIYIPFERRGER 225 Query: 269 VKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305 + DTAGIR + VEK + ++F +E A +++ L Sbjct: 226 YTLIDTAGIRRRARVNEGVEKFSVIKSFQAIEKAHVVIYL 265 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 50/89 (56%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G +N GKS+LFN L + A+V D PG TRD + + DT GI E Sbjct: 5 VALIGRTNVGKSTLFNYLTRTRDALVADFPGLTRDRQYGRVQRGERDYFVVDTGGIIEAA 64 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310 + ++ + +K+ ++ AD+IL L ++++ Sbjct: 65 EGIDDQAMKQVDHVLDEADVILFLVDVHA 93 >gi|332530165|ref|ZP_08406113.1| GTP-binding protein Der [Hylemonella gracilis ATCC 19624] gi|332040357|gb|EGI76735.1| GTP-binding protein Der [Hylemonella gracilis ATCC 19624] Length = 444 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + + G N GKS+L N ++ I D+PGTTRD + + + +G ++ DTAG+R Sbjct: 180 RFAVAGRPNVGKSTLINTWLGEERLIAFDMPGTTRDAIRVPFERQGQKFELIDTAGLRRK 239 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + VEK + +T +E+A+++LLL Sbjct: 240 GRVFEAVEKFSVVKTLQAIESANVVLLL 267 Score = 37.7 bits (86), Expect = 3.7, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + AIV D G TRD + + DT G T Sbjct: 5 LALVGRPNVGKSTLFNRLTQTRDAIVADYAGLTRDRHYGNGRQGRREFIVIDTGGFEPTA 64 Query: 282 DI-VEKEGIKRTFLEVENADLILLL 305 + + KE +T V AD ++ + Sbjct: 65 ETGIYKEMANQTRQAVAEADAVIFV 89 >gi|297621840|ref|YP_003709977.1| GTP-binding protein EngA [Waddlia chondrophila WSU 86-1044] gi|297377141|gb|ADI38971.1| GTP-binding protein EngA [Waddlia chondrophila WSU 86-1044] Length = 454 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/124 (33%), Positives = 65/124 (52%), Gaps = 9/124 (7%) Query: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 QNF E+L I+ + +SS I + E + K+ I+G N GKS+L N L ++ Sbjct: 150 QNFQIAELLESIV---SRLSSPIEKE---EELDTSIKVAIIGRPNVGKSTLTNYLLDEER 203 Query: 245 AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADL 301 +V+ IPGTTRD + + + + + DTAGIR + V+K RT +E D+ Sbjct: 204 CLVSPIPGTTRDSVDVRVSHDDEIYTFIDTAGIRRKGAEHEAVDKFAAIRTQRAIERCDI 263 Query: 302 ILLL 305 LL+ Sbjct: 264 CLLM 267 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 48/88 (54%), Gaps = 1/88 (1%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 N K+ I+G N GKSSLFN + KK +AIV + G TRD L + D G ++ DT GI Sbjct: 3 NKPKLAIVGRPNVGKSSLFNRICKKRMAIVDEAEGITRDRLYAEADCFGKEFEVIDTGGI 62 Query: 278 RETDDIVEKEGIKRTF-LEVENADLILL 304 + E I R + +E AD ++L Sbjct: 63 NPRSQVPFNEQIMRQAEIAIEEADGLIL 90 >gi|194098169|ref|YP_002001217.1| GTP-binding protein EngA [Neisseria gonorrhoeae NCCP11945] gi|239998620|ref|ZP_04718544.1| GTP-binding protein EngA [Neisseria gonorrhoeae 35/02] gi|240013743|ref|ZP_04720656.1| GTP-binding protein EngA [Neisseria gonorrhoeae DGI18] gi|240016181|ref|ZP_04722721.1| GTP-binding protein EngA [Neisseria gonorrhoeae FA6140] gi|240080325|ref|ZP_04724868.1| GTP-binding protein EngA [Neisseria gonorrhoeae FA19] gi|240112536|ref|ZP_04727026.1| GTP-binding protein EngA [Neisseria gonorrhoeae MS11] gi|240115276|ref|ZP_04729338.1| GTP-binding protein EngA [Neisseria gonorrhoeae PID18] gi|240117563|ref|ZP_04731625.1| GTP-binding protein EngA [Neisseria gonorrhoeae PID1] gi|240120813|ref|ZP_04733775.1| GTP-binding protein EngA [Neisseria gonorrhoeae PID24-1] gi|240123118|ref|ZP_04736074.1| GTP-binding protein EngA [Neisseria gonorrhoeae PID332] gi|240125369|ref|ZP_04738255.1| GTP-binding protein EngA [Neisseria gonorrhoeae SK-92-679] gi|240127821|ref|ZP_04740482.1| GTP-binding protein EngA [Neisseria gonorrhoeae SK-93-1035] gi|260440907|ref|ZP_05794723.1| GTP-binding protein EngA [Neisseria gonorrhoeae DGI2] gi|238690187|sp|B4RKD2|DER_NEIG2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|193933459|gb|ACF29283.1| essential Gc protein [Neisseria gonorrhoeae NCCP11945] gi|317163893|gb|ADV07434.1| GTP-binding protein EngA [Neisseria gonorrhoeae TCDC-NG08107] Length = 485 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/96 (35%), Positives = 58/96 (60%), Gaps = 5/96 (5%) Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---E 279 ++G N GKS+L NA+ + I D+ GTTRD + ID + EG I DTAG+R + Sbjct: 179 AVIGRPNVGKSTLVNAILGEKRVIAFDMAGTTRDSIHIDFEREGKPFTIIDTAGVRRRGK 238 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D+ VEK + + VE A++ +L+ ++++++I+ Sbjct: 239 VDEAVEKFSVIKAMQAVEAANVAVLV--LDAQQDIA 272 Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280 I ++G N GKS+LFN L + A+V D+PG TRD + + DT G Sbjct: 5 IALIGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYFVIDTGGFEPVV 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 D + E K+T V+ AD ++ L Sbjct: 65 DSGILHEMAKQTLQAVDEADAVVFL 89 >gi|122702675|emb|CAL88527.1| GTPase [Helicobacter pylori] Length = 170 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIVLNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|110596891|ref|ZP_01385181.1| Small GTP-binding protein domain:GTP-binding [Chlorobium ferrooxidans DSM 13031] gi|110341578|gb|EAT60038.1| Small GTP-binding protein domain:GTP-binding [Chlorobium ferrooxidans DSM 13031] Length = 437 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 49/86 (56%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN + ++ AIV PG TRD D + +G + DT G Sbjct: 5 IALVGRPNVGKSTLFNRILRQRSAIVDSTPGVTRDRHIADGEWQGKQFLLMDTGGYNAES 64 Query: 282 DIVEKEGIKRTFLEVENADLILLLKE 307 D++ K +++T + + +AD+I+ + + Sbjct: 65 DLISKAMLEQTLMAIRDADIIVFVTD 90 Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 3/87 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKSS NAL + IV+ I GTTRD + + + DTAG+R+ Sbjct: 180 LAIVGRPNVGKSSFVNALLNSNRHIVSSIAGTTRDAIDSRFTRKKQEFVLIDTAGLRKRT 239 Query: 282 DI---VEKEGIKRTFLEVENADLILLL 305 I +E RT +E D+ L++ Sbjct: 240 KIDRGIEYYSSLRTEKALERCDVALVM 266 >gi|59800867|ref|YP_207579.1| GTP-binding protein EngA [Neisseria gonorrhoeae FA 1090] gi|8134430|sp|O87407|DER_NEIG1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|3722226|gb|AAC63508.1| essential Gc protein [Neisseria gonorrhoeae] gi|59717762|gb|AAW89167.1| putative GTP-binding protein [Neisseria gonorrhoeae FA 1090] Length = 485 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/96 (35%), Positives = 58/96 (60%), Gaps = 5/96 (5%) Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---E 279 ++G N GKS+L NA+ + I D+ GTTRD + ID + EG I DTAG+R + Sbjct: 179 AVIGRPNVGKSTLVNAILGEKRVIAFDMAGTTRDSIHIDFEREGKPFTIIDTAGVRRRGK 238 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D+ VEK + + VE A++ +L+ ++++++I+ Sbjct: 239 VDEAVEKFSVIKAMQAVEAANVAVLV--LDAQQDIA 272 Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280 I ++G N GKS+LFN L + A+V D+PG TRD + + DT G Sbjct: 5 IALIGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYFVIDTGGFEPVV 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 D + E K+T V+ AD ++ L Sbjct: 65 DSGILHEMAKQTLQAVDEADAVVFL 89 >gi|182418977|ref|ZP_02950233.1| GTP-binding protein EngA [Clostridium butyricum 5521] gi|237668464|ref|ZP_04528448.1| ribosome-associated GTPase EngA [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377260|gb|EDT74828.1| GTP-binding protein EngA [Clostridium butyricum 5521] gi|237656812|gb|EEP54368.1| ribosome-associated GTPase EngA [Clostridium butyricum E4 str. BoNT E BL5262] Length = 438 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 52/85 (61%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + ++G N GKS+LFN LA K ++IV D PG TRD + + + + + DT GI E Sbjct: 6 VAMVGRPNVGKSTLFNRLAGKRISIVQDTPGVTRDRVYAEAEWLTHTFTMIDTGGIEPER 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 +DI+ ++ ++ + +E AD+I+ + Sbjct: 66 NDIIVQQMRRQANIAIETADVIVFI 90 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 53/88 (60%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I ++G N GKSSL N L +D IV+++ GTTRD + +L+ E + DTAG+R Sbjct: 178 RIAMIGKPNVGKSSLINKLLGEDRVIVSEVAGTTRDAIDSELETEEGKFILIDTAGLRRK 237 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E+ + RT+ +E +D+ +L+ Sbjct: 238 SKVKEEIERYSVVRTYAAIERSDVCILM 265 >gi|122700799|emb|CAL87988.1| GTPase [Helicobacter pylori] Length = 170 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 49/82 (59%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA+ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARGRIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|85059734|ref|YP_455436.1| GTP-binding protein EngA [Sodalis glossinidius str. 'morsitans'] gi|123519082|sp|Q2NS44|DER_SODGM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|84780254|dbj|BAE75031.1| putative GTP-binding protein [Sodalis glossinidius str. 'morsitans'] Length = 488 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD + EG+ + DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYCRAEWEGHEFIVIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE ++ + +E AD++L + Sbjct: 65 EGVETRMAGQSLVAIEEADIVLFM 88 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/98 (34%), Positives = 61/98 (62%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I + + + DTAG+R+ Sbjct: 202 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMVRDEREYVLIDTAGVRKR 261 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + VEK + +T +E+A+++LL+ I++++ IS Sbjct: 262 GKVTETVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 297 >gi|113954294|ref|YP_729814.1| GTP-binding protein EngA [Synechococcus sp. CC9311] gi|123031842|sp|Q0ICK8|DER_SYNS3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|113881645|gb|ABI46603.1| GTP-binding protein EngA [Synechococcus sp. CC9311] Length = 455 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSL N++ + AIV+ I GTTRD + ++ E ++ DTAGIR Sbjct: 179 QLSIIGRPNVGKSSLLNSICGETRAIVSPIRGTTRDTIDTRIERENRRWRLIDTAGIRRR 238 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + E GI R+F +E +D+ +L+ Sbjct: 239 RSVNYGPEFFGINRSFKAIERSDVCVLV 266 Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 31/61 (50%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+L N L + AIV D PG TRD D K+ DT G+ D Sbjct: 6 VAIIGRPNVGKSTLVNRLCRSREAIVHDQPGVTRDRTYQDGYWGDREFKVVDTGGLVFDD 65 Query: 282 D 282 D Sbjct: 66 D 66 >gi|329962635|ref|ZP_08300583.1| ribosome biogenesis GTPase Der [Bacteroides fluxus YIT 12057] gi|328529666|gb|EGF56564.1| ribosome biogenesis GTPase Der [Bacteroides fluxus YIT 12057] Length = 437 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 53/88 (60%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G NAGKSS+ NA +D IVT+I GTTRD + + G+ + DTAGIR+ Sbjct: 177 RFAVVGRPNAGKSSIVNAFIGEDRNIVTEIAGTTRDSIYTRYNKFGFDFYLVDTAGIRKK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + + +E + R+ +EN+D+ +L+ Sbjct: 237 NKVSEDLEYYSVIRSIRSIENSDVCILM 264 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/91 (38%), Positives = 51/91 (56%), Gaps = 1/91 (1%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277 G + I+G N GKS+LFN L K AIV + GTTRD + G + DT G + Sbjct: 2 GNLVAIVGRPNVGKSTLFNRLTKSRQAIVNEEAGTTRDRQYGKTEWLGREFSVVDTGGWV 61 Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEI 308 +DDI E+E K+ + V+ AD+IL + ++ Sbjct: 62 VNSDDIFEEEIRKQVLMAVDEADVILFVVDV 92 >gi|15640782|ref|NP_230412.1| GTP-binding protein EngA [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121585667|ref|ZP_01675462.1| GTP-binding protein [Vibrio cholerae 2740-80] gi|121726039|ref|ZP_01679338.1| GTP-binding protein [Vibrio cholerae V52] gi|147675115|ref|YP_001216248.1| GTP-binding protein EngA [Vibrio cholerae O395] gi|153817276|ref|ZP_01969943.1| GTP-binding protein [Vibrio cholerae NCTC 8457] gi|153821375|ref|ZP_01974042.1| GTP-binding protein [Vibrio cholerae B33] gi|227080942|ref|YP_002809493.1| GTP-binding protein [Vibrio cholerae M66-2] gi|229505623|ref|ZP_04395133.1| GTP-binding protein EngA [Vibrio cholerae BX 330286] gi|229510705|ref|ZP_04400184.1| GTP-binding protein EngA [Vibrio cholerae B33] gi|229517827|ref|ZP_04407271.1| GTP-binding protein EngA [Vibrio cholerae RC9] gi|229608641|ref|YP_002879289.1| GTP-binding protein EngA [Vibrio cholerae MJ-1236] gi|254847900|ref|ZP_05237250.1| GTP-binding protein EngA [Vibrio cholerae MO10] gi|255744569|ref|ZP_05418520.1| GTP-binding protein EngA [Vibrio cholera CIRS 101] gi|262161296|ref|ZP_06030407.1| GTP-binding protein EngA [Vibrio cholerae INDRE 91/1] gi|262168789|ref|ZP_06036484.1| GTP-binding protein EngA [Vibrio cholerae RC27] gi|298499104|ref|ZP_07008911.1| ribosome-associated GTPase EngA [Vibrio cholerae MAK 757] gi|26006742|sp|Q9KTW7|DER_VIBCH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|172047436|sp|A5F3E6|DER_VIBC3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|254783177|sp|C3LT16|DER_VIBCM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|9655209|gb|AAF93928.1| GTP-binding protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121550030|gb|EAX60046.1| GTP-binding protein [Vibrio cholerae 2740-80] gi|121631521|gb|EAX63891.1| GTP-binding protein [Vibrio cholerae V52] gi|126512192|gb|EAZ74786.1| GTP-binding protein [Vibrio cholerae NCTC 8457] gi|126521085|gb|EAZ78308.1| GTP-binding protein [Vibrio cholerae B33] gi|146316998|gb|ABQ21537.1| GTP-binding protein [Vibrio cholerae O395] gi|227008830|gb|ACP05042.1| GTP-binding protein [Vibrio cholerae M66-2] gi|227012587|gb|ACP08797.1| GTP-binding protein [Vibrio cholerae O395] gi|229344542|gb|EEO09516.1| GTP-binding protein EngA [Vibrio cholerae RC9] gi|229350670|gb|EEO15611.1| GTP-binding protein EngA [Vibrio cholerae B33] gi|229357846|gb|EEO22763.1| GTP-binding protein EngA [Vibrio cholerae BX 330286] gi|229371296|gb|ACQ61719.1| GTP-binding protein EngA [Vibrio cholerae MJ-1236] gi|254843605|gb|EET22019.1| GTP-binding protein EngA [Vibrio cholerae MO10] gi|255737600|gb|EET92994.1| GTP-binding protein EngA [Vibrio cholera CIRS 101] gi|262022907|gb|EEY41613.1| GTP-binding protein EngA [Vibrio cholerae RC27] gi|262029046|gb|EEY47699.1| GTP-binding protein EngA [Vibrio cholerae INDRE 91/1] gi|297543437|gb|EFH79487.1| ribosome-associated GTPase EngA [Vibrio cholerae MAK 757] Length = 494 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 61/98 (62%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I + + + DTAG+R Sbjct: 207 KLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMKRDEREYVLIDTAGVRRR 266 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 ++ VEK + +T +E+A+++LL+ +++++ IS Sbjct: 267 KRINETVEKFSVVKTLQAIEDANVVLLV--VDARENIS 302 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD L + + DT GI ++ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGIDGSE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE + +++ ++ AD++L + Sbjct: 65 EGVETKMAQQSLAAIDEADVVLFM 88 >gi|122702391|emb|CAL88386.1| GTPase [Helicobacter pylori] Length = 170 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFVGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|331703406|ref|YP_004400093.1| GTP binding protein EngA [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328801961|emb|CBW54115.1| GTP binding protein EngA, probably truncated inC terminal [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 435 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/121 (35%), Positives = 70/121 (57%), Gaps = 8/121 (6%) Query: 199 LKNDISSHISQGKLGEIIRN-GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257 L + + S+IS+ + EII++ KI I+G N GKSSL N+L ++ IV++I GTT D Sbjct: 155 LLDKVISYISKNE--EIIKDDSTKIAIIGRPNVGKSSLVNSLVNENRMIVSEIEGTTLDA 212 Query: 258 LTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEI 314 + I + DTAGIR+ + +EK R+ + +AD++LL+ I++ K I Sbjct: 213 VDISFSYNKKKYTVIDTAGIRKKSKLGQTIEKYSYLRSLSAISDADIVLLM--IDATKPI 270 Query: 315 S 315 + Sbjct: 271 T 271 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKSSLFN + K+ +IV D PG TRD + + + DT GI +D Sbjct: 6 VAIVGKPNVGKSSLFNRIIKEKKSIVDDKPGVTRDRIYSSAEWLTREFILIDTGGISLSD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + E +T + +E AD+I+ + Sbjct: 66 QLFSNEIKLQTQIAIEQADVIIFV 89 >gi|242255940|gb|ACS88954.1| GTPase [Helicobacter pylori] Length = 170 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/83 (43%), Positives = 53/83 (63%), Gaps = 3/83 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-- 67 Query: 282 DIVEKEGIKRTFLE-VENADLIL 303 D++ + IK L+ + +DLIL Sbjct: 68 DVLLSKKIKALNLKAAQMSDLIL 90 >gi|218128437|ref|ZP_03457241.1| hypothetical protein BACEGG_00005 [Bacteroides eggerthii DSM 20697] gi|317475737|ref|ZP_07934996.1| ribosome-associated GTPase EngA [Bacteroides eggerthii 1_2_48FAA] gi|217989328|gb|EEC55641.1| hypothetical protein BACEGG_00005 [Bacteroides eggerthii DSM 20697] gi|316908120|gb|EFV29815.1| ribosome-associated GTPase EngA [Bacteroides eggerthii 1_2_48FAA] Length = 437 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 53/88 (60%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G NAGKSS+ NA +D IVT+I GTTRD + + G+ + DTAGIR+ Sbjct: 177 RFAVVGRPNAGKSSIVNAFIGEDRNIVTEIAGTTRDSIYTRYNKFGFDFYLVDTAGIRKK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + + +E + R+ +EN+D+ +L+ Sbjct: 237 NKVNEDLEYYSVIRSIRSIENSDVCILM 264 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 35/91 (38%), Positives = 51/91 (56%), Gaps = 1/91 (1%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277 G + I+G N GKS+LFN L K AIV + GTTRD + G + DT G + Sbjct: 2 GNLVAIVGRPNVGKSTLFNRLTKTRQAIVNEEAGTTRDRQYGKSEWLGREFSVVDTGGWV 61 Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEI 308 +DDI E+E K+ + V+ AD+IL + ++ Sbjct: 62 VNSDDIFEEEIRKQVLMAVDEADVILFVVDV 92 >gi|122702725|emb|CAL88552.1| GTPase [Helicobacter pylori] Length = 170 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKVLNLKAAQMSDLIL 90 >gi|309809326|ref|ZP_07703195.1| ribosome biogenesis GTPase Der [Lactobacillus iners SPIN 2503V10-D] gi|308170439|gb|EFO72463.1| ribosome biogenesis GTPase Der [Lactobacillus iners SPIN 2503V10-D] Length = 435 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/185 (25%), Positives = 89/185 (48%), Gaps = 29/185 (15%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 N + I+G N GKSS+ N++ ++ IV D+ GTTRD + + +G I DTAGI Sbjct: 173 NNIRFSIIGRPNVGKSSIVNSILGENRVIVADMEGTTRDAIDTIFEKDGQKYTIVDTAGI 232 Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLLKE-----INSKKEIS------------FP 317 R + VEK + R+ +E +D+ +++ + I K I+ Sbjct: 233 RRKGKVYEKVEKYSVMRSISAIEQSDVAIIVIDASVGIIEQDKHIAGYAHDAGKGVIIAV 292 Query: 318 KNIDFIFIGTKS--DLYSTYTEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKK 368 D + T S D +E+ +L +S+ TG+ +E++++ +K++ N+ ++ Sbjct: 293 NKWDVPYKTTTSMQDFVKVIRQEFQYLDYAPIVFVSAKTGQRIEDIVSLVKNVKENQQRR 352 Query: 369 LPFSI 373 + S+ Sbjct: 353 IQSSV 357 Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 50/87 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS++FN + VAIV D PG TRD + + G + DT GI D Sbjct: 6 VALVGRPNVGKSTIFNRIINSRVAIVEDQPGVTRDRIYANAQWMGKQFVLVDTGGITFED 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI 308 +++E++ + + + AD+I++L ++ Sbjct: 66 NVIEEQIKTQAEIAINEADVIVMLSDV 92 >gi|313897444|ref|ZP_07830987.1| ribosome biogenesis GTPase Der [Clostridium sp. HGF2] gi|312957814|gb|EFR39439.1| ribosome biogenesis GTPase Der [Clostridium sp. HGF2] Length = 436 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K ++G N GKSSL NA+ ++ IV++I GTTRD + EG + DTAGIR+ Sbjct: 176 KFCVIGRPNVGKSSLVNAILNQERVIVSNIEGTTRDAIDTPFKREGKEYVVIDTAGIRKR 235 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +EK + R +E +D++L++ Sbjct: 236 GKVYENIEKYSVLRAMSAIERSDVVLVV 263 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 24/84 (28%), Positives = 44/84 (52%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN + + +IV D PG TRD + + ++ DT GI+ + Sbjct: 6 VAIVGRPNVGKSTIFNRIIGERKSIVEDTPGVTRDRIYGKAEWLTREFRVIDTGGIQLAN 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + E + + ++ AD I+ + Sbjct: 66 QDFQTEINMQVEIAIDEADCIVFV 89 >gi|292806690|gb|ADE42475.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/82 (41%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ +E + +DLIL Sbjct: 69 ALLSQEIKALNLKAAQMSDLIL 90 >gi|242255910|gb|ACS88939.1| GTPase [Helicobacter pylori] Length = 170 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKVLNLKAAQMSDLIL 90 >gi|329957356|ref|ZP_08297876.1| ribosome biogenesis GTPase Der [Bacteroides clarus YIT 12056] gi|328523069|gb|EGF50172.1| ribosome biogenesis GTPase Der [Bacteroides clarus YIT 12056] Length = 437 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 53/88 (60%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G NAGKSS+ NA +D IVT+I GTTRD + + G+ + DTAGIR+ Sbjct: 177 RFAVVGRPNAGKSSIVNAFIGEDRNIVTEIAGTTRDSIYTRYNKFGFDFYLVDTAGIRKK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + + +E + R+ +EN+D+ +L+ Sbjct: 237 NKVSEDLEYYSVIRSIRSIENSDVCILM 264 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 35/91 (38%), Positives = 51/91 (56%), Gaps = 1/91 (1%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277 G + I+G N GKS+LFN L K AIV + GTTRD + G + DT G + Sbjct: 2 GNLVAIVGRPNVGKSTLFNRLTKTRQAIVNEEAGTTRDRQYGKSEWLGREFSVVDTGGWV 61 Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEI 308 +DDI E+E K+ + V+ AD+IL + ++ Sbjct: 62 VNSDDIFEEEIRKQVLMAVDEADVILFVVDV 92 >gi|319637814|ref|ZP_07992580.1| GTP-binding protein engA [Neisseria mucosa C102] gi|317400969|gb|EFV81624.1| GTP-binding protein engA [Neisseria mucosa C102] Length = 485 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/96 (34%), Positives = 59/96 (61%), Gaps = 5/96 (5%) Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---E 279 ++G N GKS+L NA+ ++ I D+ GTTRD + ID + +G I DTAG+R + Sbjct: 179 AVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSIHIDFERDGKPFTIIDTAGVRRRGK 238 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D +VEK + + VE A++ +L+ ++++++I+ Sbjct: 239 VDKVVEKFSVIKAMQAVEAANVAVLV--LDAQQDIA 272 Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280 I ++G N GKS+LFN L + A+V D+PG TRD + + DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGFEPVV 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 D + E K+T V+ AD ++ L Sbjct: 65 DSGILHEMAKQTLQAVDEADAVVFL 89 >gi|315656788|ref|ZP_07909675.1| ribosome-associated GTPase EngA [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492743|gb|EFU82347.1| ribosome-associated GTPase EngA [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 523 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/91 (37%), Positives = 54/91 (59%), Gaps = 9/91 (9%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ ++G N GKSSL N+L+ A+V+++PGTTRD + L+L+G DTAG+R Sbjct: 263 RVALVGRPNVGKSSLLNSLSGAGRAVVSEVPGTTRDPVDEVLELDGQQWVFVDTAGVRRR 322 Query: 281 DDIVEKE------GIKRTFLEVENADLILLL 305 V++ + RT +ENAD+ L+L Sbjct: 323 ---VKRSVGADYYSVLRTQAAIENADVALVL 350 Score = 44.3 bits (103), Expect = 0.036, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 32/61 (52%) Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 + N + ++G N GKS+L N + + A+V D PG TRD +T D G + DT Sbjct: 83 VPNWPTLAVVGRPNVGKSTLVNRILGRREAVVLDEPGVTRDRVTYDAHWNGRNFHLVDTG 142 Query: 276 G 276 G Sbjct: 143 G 143 >gi|238926984|ref|ZP_04658744.1| GTP-binding protein EngA [Selenomonas flueggei ATCC 43531] gi|238885218|gb|EEQ48856.1| GTP-binding protein EngA [Selenomonas flueggei ATCC 43531] Length = 441 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/86 (40%), Positives = 52/86 (60%), Gaps = 3/86 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--E 279 + ++G N GKS+LFN + KK V+IV D+PG TRD + +D + + I DT GI E Sbjct: 6 VAVVGRPNVGKSTLFNQIGKKRVSIVDDMPGVTRDRIYLDAEWLTHEFTIIDTGGIEFDE 65 Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305 +D I+ + + L +E AD+IL L Sbjct: 66 SDHIL-RSMRSQAELAMEEADVILFL 90 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 3/87 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKSSL N L ++ IV+D+PGTTRD + +G + DTAG+R Sbjct: 179 IAVVGRPNVGKSSLVNRLLGEERVIVSDVPGTTRDAIDTHFTKDGAKYLLIDTAGMRRKG 238 Query: 282 DI---VEKEGIKRTFLEVENADLILLL 305 I VE+ + R+ ++ A ++L++ Sbjct: 239 KITLPVERYSVMRSLRAIDRAGVVLMV 265 >gi|167765447|ref|ZP_02437560.1| hypothetical protein BACSTE_03837 [Bacteroides stercoris ATCC 43183] gi|167697075|gb|EDS13654.1| hypothetical protein BACSTE_03837 [Bacteroides stercoris ATCC 43183] Length = 437 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 53/88 (60%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G NAGKSS+ NA +D IVT+I GTTRD + + G+ + DTAGIR+ Sbjct: 177 RFAVVGRPNAGKSSIVNAFIGEDRNIVTEIAGTTRDSIYTRYNKFGFDFYLVDTAGIRKK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + + +E + R+ +EN+D+ +L+ Sbjct: 237 NKVNEDLEYYSVIRSIRSIENSDVCILM 264 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 35/91 (38%), Positives = 51/91 (56%), Gaps = 1/91 (1%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277 G + I+G N GKS+LFN L K AIV + GTTRD + G + DT G + Sbjct: 2 GNLVAIVGRPNVGKSTLFNRLTKTRQAIVNEEAGTTRDRQYGKSEWLGREFSVVDTGGWV 61 Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEI 308 +DDI E+E K+ + V+ AD+IL + ++ Sbjct: 62 VNSDDIFEEEIRKQVLMAVDEADVILFVVDV 92 >gi|122702249|emb|CAL88315.1| GTPase [Helicobacter pylori] Length = 170 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/84 (41%), Positives = 50/84 (59%), Gaps = 1/84 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + KE + +DLIL + Sbjct: 69 AFLSKEIKAFNLKAAQMSDLILYV 92 >gi|89890093|ref|ZP_01201604.1| GTPase [Flavobacteria bacterium BBFL7] gi|89518366|gb|EAS21022.1| GTPase [Flavobacteria bacterium BBFL7] Length = 433 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G NAGKSS NAL ++ IVTDI GTTRD + + G+ + DTAGIR Sbjct: 175 RFAVVGRPNAGKSSFINALIGEERYIVTDIAGTTRDSIDTKYNRFGFEFNLVDTAGIRRK 234 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E + R+ +E+AD+ +L+ Sbjct: 235 KKVKEDLEFYSVMRSVRAIEHADVCILI 262 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 1/90 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 + I+G N GKS+LFN L ++ AI + G TRD D G + DT G + + Sbjct: 4 VAIVGRPNVGKSTLFNRLIQRREAITDAVSGVTRDRHYGKSDWNGKEFSVIDTGGYVVGS 63 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310 DD+ E E + L ++ AD+I+ + + S Sbjct: 64 DDVFEAEIDHQVELAIDEADVIVFMVDAES 93 >gi|238021706|ref|ZP_04602132.1| hypothetical protein GCWU000324_01609 [Kingella oralis ATCC 51147] gi|237866320|gb|EEP67362.1| hypothetical protein GCWU000324_01609 [Kingella oralis ATCC 51147] Length = 489 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/96 (34%), Positives = 59/96 (61%), Gaps = 5/96 (5%) Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---E 279 ++G N GKS+L NA+ ++ I D+ GTTRD + ID + EG I DTAG+R + Sbjct: 179 AVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSIHIDFEREGKPFTIIDTAGVRRRGK 238 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D+ VEK + + +E A++ +L+ ++++++I+ Sbjct: 239 VDEAVEKFSVIKAMQAIEAANIAVLV--LDAQQDIA 272 Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280 I ++G N GKS+LFN L + A+V D+PG TRD + + DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVVDTGGFEPVV 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 D + E K+T V+ AD ++ L Sbjct: 65 DSGILHEMAKQTLQAVDEADAVVFL 89 >gi|169830379|ref|YP_001716361.1| small GTP-binding protein [Candidatus Desulforudis audaxviator MP104C] gi|169637223|gb|ACA58729.1| small GTP-binding protein [Candidatus Desulforudis audaxviator MP104C] Length = 427 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/150 (30%), Positives = 81/150 (54%), Gaps = 18/150 (12%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280 + I G NAGKSSL NAL + VAIV D+PGTT D + ++L V + DTAG+ +T Sbjct: 12 LAIFGRRNAGKSSLINALTGQQVAIVADVPGTTTDPVAKAMELLPLGPVMLIDTAGLDDT 71 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEI---SFPKNIDFIFIGTKSDLY 332 ++ + ++++ ++ ADL+LL+ + ++++ +++ I + K+DLY Sbjct: 72 GEL-GRLRVEKSLDVLQKADLVLLVVDPGQGFGACEQDVLAHVRARDLPVIAVINKADLY 130 Query: 333 S-TYTEEYDHL-------ISSFTGEGLEEL 354 E+ L +S+ TG G++ L Sbjct: 131 PEGAAGEWPELSSLPRIPVSARTGYGIDRL 160 >gi|153828302|ref|ZP_01980969.1| GTP-binding protein [Vibrio cholerae 623-39] gi|254285481|ref|ZP_04960445.1| GTP-binding protein [Vibrio cholerae AM-19226] gi|148876256|gb|EDL74391.1| GTP-binding protein [Vibrio cholerae 623-39] gi|150424343|gb|EDN16280.1| GTP-binding protein [Vibrio cholerae AM-19226] Length = 494 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 61/98 (62%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I + + + DTAG+R Sbjct: 207 KLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMKRDEREYVLIDTAGVRRR 266 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 ++ VEK + +T +E+A+++LL+ +++++ IS Sbjct: 267 KRINETVEKFSVVKTLQAIEDANVVLLV--VDARENIS 302 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD L + + DT GI ++ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGIDGSE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE + +++ ++ AD++L + Sbjct: 65 EGVETKMAQQSLAAIDEADVVLFM 88 >gi|297581162|ref|ZP_06943086.1| GTP-binding protein [Vibrio cholerae RC385] gi|297534478|gb|EFH73315.1| GTP-binding protein [Vibrio cholerae RC385] Length = 494 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 61/98 (62%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I + + + DTAG+R Sbjct: 207 KLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMKRDEREYVLIDTAGVRRR 266 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 ++ VEK + +T +E+A+++LL+ +++++ IS Sbjct: 267 KRINETVEKFSVVKTLQAIEDANVVLLV--VDARENIS 302 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD L + + DT GI ++ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGIDGSE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE + +++ ++ AD++L + Sbjct: 65 EGVETKMAQQSLAAIDEADVVLFM 88 >gi|258619961|ref|ZP_05715001.1| GTP-binding protein [Vibrio mimicus VM573] gi|258627193|ref|ZP_05721981.1| GTP-binding protein [Vibrio mimicus VM603] gi|262165075|ref|ZP_06032812.1| GTP-binding protein EngA [Vibrio mimicus VM223] gi|262172166|ref|ZP_06039844.1| GTP-binding protein EngA [Vibrio mimicus MB-451] gi|258580495|gb|EEW05456.1| GTP-binding protein [Vibrio mimicus VM603] gi|258587694|gb|EEW12403.1| GTP-binding protein [Vibrio mimicus VM573] gi|261893242|gb|EEY39228.1| GTP-binding protein EngA [Vibrio mimicus MB-451] gi|262024791|gb|EEY43459.1| GTP-binding protein EngA [Vibrio mimicus VM223] Length = 494 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 61/98 (62%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I + + + DTAG+R Sbjct: 207 KLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMKRDEREYVLIDTAGVRRR 266 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 ++ VEK + +T +E+A+++LL+ +++++ IS Sbjct: 267 KRINETVEKFSVVKTLQAIEDANVVLLV--VDARENIS 302 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD L + + DT GI ++ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGIDGSE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE + +++ ++ AD++L + Sbjct: 65 EGVETKMAQQSLAAIDEADVVLFM 88 >gi|317452823|emb|CBL87847.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 49/82 (59%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE +DLIL Sbjct: 69 ALLSKEIKALNLKAARMSDLIL 90 >gi|198274289|ref|ZP_03206821.1| hypothetical protein BACPLE_00431 [Bacteroides plebeius DSM 17135] gi|198272779|gb|EDY97048.1| hypothetical protein BACPLE_00431 [Bacteroides plebeius DSM 17135] Length = 441 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 53/88 (60%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G NAGKSS+ NA +D IVT+I GTTRD + + G+ + DTAGIR+ Sbjct: 181 RFAVVGRPNAGKSSIINAFIGEDRNIVTEIAGTTRDSIYTRYNKFGFDFYLVDTAGIRKK 240 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + + +E + R+ +EN+D+ +L+ Sbjct: 241 NKVSEDLEYYSVIRSIRSIENSDVCILM 268 Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 34/91 (37%), Positives = 51/91 (56%), Gaps = 1/91 (1%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277 G + I+G N GKS+LFN L K AIV + GTTRD + G + DT G + Sbjct: 6 GNLVAIVGRPNVGKSTLFNRLTKSRQAIVNEQAGTTRDRQYGKSEWLGKEFSVVDTGGWV 65 Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEI 308 +DD+ E+E K+ L ++ AD+IL + ++ Sbjct: 66 VNSDDVFEEEIRKQVMLAIDEADVILFVVDV 96 >gi|315655298|ref|ZP_07908198.1| ribosome-associated GTPase EngA [Mobiluncus curtisii ATCC 51333] gi|315490238|gb|EFU79863.1| ribosome-associated GTPase EngA [Mobiluncus curtisii ATCC 51333] Length = 523 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/91 (37%), Positives = 54/91 (59%), Gaps = 9/91 (9%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ ++G N GKSSL N+L+ A+V+++PGTTRD + L+L+G DTAG+R Sbjct: 263 RVALVGRPNVGKSSLLNSLSGAGRAVVSEVPGTTRDPVDEVLELDGQQWVFVDTAGVRRR 322 Query: 281 DDIVEKE------GIKRTFLEVENADLILLL 305 V++ + RT +ENAD+ L+L Sbjct: 323 ---VKRSVGADYYSVLRTQAAIENADVALVL 350 Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 31/61 (50%) Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 + N + ++G N GKS+L N + + A+V D PG TRD + D G + DT Sbjct: 83 VPNWPTLAVVGRPNVGKSTLVNRILGRREAVVLDEPGVTRDRVMYDAHWNGRNFHLVDTG 142 Query: 276 G 276 G Sbjct: 143 G 143 >gi|291550925|emb|CBL27187.1| ribosome-associated GTPase EngA [Ruminococcus torques L2-14] Length = 442 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 68/121 (56%), Gaps = 6/121 (4%) Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247 +S+ L D+L + +++H + E + +I I+G N GKSS+ N L ++ IV Sbjct: 149 ASRLGLGDML---DAVTAHFPEWDPSEADDDRPRIAIVGKPNVGKSSIINRLLGENRVIV 205 Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILL 304 ++I GTTRD + ++ +G DTAG+R + I +E+ I RT VE AD++L+ Sbjct: 206 SNIAGTTRDAIDTEIVHDGKEYIFIDTAGLRRKNKIKEELERYSIIRTVSAVERADVVLM 265 Query: 305 L 305 + Sbjct: 266 V 266 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 53/88 (60%), Gaps = 1/88 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFN LA + ++IV D PG TRD + D+D + DT GI ++ Sbjct: 6 VAIVGRPNVGKSTLFNVLAGEMISIVKDTPGVTRDRIYADVDWLDRDFTLIDTGGIEPDS 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308 DI+ + ++ + ++ AD+I+ + ++ Sbjct: 66 SDIILSQMREQAQIAIDTADVIIFITDV 93 >gi|261212137|ref|ZP_05926423.1| GTP-binding protein EngA [Vibrio sp. RC341] gi|260838745|gb|EEX65396.1| GTP-binding protein EngA [Vibrio sp. RC341] Length = 494 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 61/98 (62%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I + + + DTAG+R Sbjct: 207 KLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMKRDEREYVLIDTAGVRRR 266 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 ++ VEK + +T +E+A+++LL+ +++++ IS Sbjct: 267 KRINETVEKFSVVKTLQAIEDANVVLLV--VDARENIS 302 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD L + + DT GI ++ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGIDGSE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE + +++ ++ AD++L + Sbjct: 65 EGVETKMAQQSLAAIDEADVVLFM 88 >gi|292806674|gb|ADE42467.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/82 (41%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ +E + +DLIL Sbjct: 69 ALLSQEIKALNLKAAQMSDLIL 90 >gi|262402852|ref|ZP_06079413.1| GTP-binding protein EngA [Vibrio sp. RC586] gi|262351634|gb|EEZ00767.1| GTP-binding protein EngA [Vibrio sp. RC586] Length = 494 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 61/98 (62%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I + + + DTAG+R Sbjct: 207 KLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMKRDEREYVLIDTAGVRRR 266 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 ++ VEK + +T +E+A+++LL+ +++++ IS Sbjct: 267 KRINETVEKFSVVKTLQAIEDANVVLLV--VDARENIS 302 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD L + + DT GI ++ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVVDTGGIDGSE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE + +++ ++ AD++L + Sbjct: 65 EGVETKMAQQSLAAIDEADVVLFM 88 >gi|237723395|ref|ZP_04553876.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|229447917|gb|EEO53708.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] Length = 396 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 80/162 (49%), Gaps = 18/162 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280 I G N+GKSSL NAL +D A+V+D PGTT D+++ ++++G DT G + Sbjct: 14 IAFFGRRNSGKSSLINALTGQDTALVSDTPGTTTDLVSKAMEIQGIGPCLFIDTPGFDDE 73 Query: 281 DDIVEKEGIKRTFLEVENADLILLL---------KEINS---KKEISFPKNIDFIFIGTK 328 ++ E I RT +E D+ LLL KE+ + +K I ++ I I Sbjct: 74 GELGELR-ISRTLKAIEKTDIALLLCGDTTFSYEKEMLALLKEKNIPVIPVLNKIDIREN 132 Query: 329 SDLYSTYTEE----YDHLISSFTGEGLEELINKIKSILSNKF 366 SD +TY EE LIS+ G+E++ I L + F Sbjct: 133 SDSLATYIEEECKIRPLLISAKEKTGIEQIRQAILEKLPSDF 174 >gi|149908865|ref|ZP_01897525.1| GTP-binding protein EngA [Moritella sp. PE36] gi|149808139|gb|EDM68080.1| GTP-binding protein EngA [Moritella sp. PE36] Length = 493 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/180 (26%), Positives = 82/180 (45%), Gaps = 27/180 (15%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ ++G N GKS+L N + ++ +V D+PGTTRD + I ++ G + DTAG+R Sbjct: 207 KLAMIGCPNVGKSTLVNRILGEERVVVYDMPGTTRDSIYIPMERAGRNYMLIDTAGVRRR 266 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKE----------------INSKKEISFPKN-I 320 +I VEK I + +++A+++L++ + INS + I N Sbjct: 267 KNINEAVEKFSIVKALQAIDDANVVLMVLDARVGVTSQDLTLLGFAINSGRSIVIAINKW 326 Query: 321 DFIFIGTKSDLYSTYTEEYD-------HLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373 D + G K + S H IS+ G G+ L I + K++ S+ Sbjct: 327 DGLDAGVKDRIKSELDRRLGFIDFARIHFISALHGTGVGNLFESITEAFDSSTKRVSTSM 386 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L + A+V D PG TRD +L G + DT GI + Sbjct: 5 IALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQANLAGREFIVVDTGGINGDE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + ++ + ++ L +E AD +L + Sbjct: 65 EGIDAKMADQSLLAIEEADAVLFM 88 >gi|153216257|ref|ZP_01950357.1| GTP-binding protein [Vibrio cholerae 1587] gi|124114402|gb|EAY33222.1| GTP-binding protein [Vibrio cholerae 1587] Length = 494 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 61/98 (62%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I + + + DTAG+R Sbjct: 207 KLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMKRDEREYVLIDTAGVRRR 266 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 ++ VEK + +T +E+A+++LL+ +++++ IS Sbjct: 267 KRINETVEKFSVVKTLQAIEDANVVLLV--VDARENIS 302 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD L + + DT GI ++ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGIDGSE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE + +++ ++ AD++L + Sbjct: 65 EGVETKMAQQSLAAIDEADVVLFM 88 >gi|153800614|ref|ZP_01955200.1| GTP-binding protein [Vibrio cholerae MZO-3] gi|153824529|ref|ZP_01977196.1| GTP-binding protein [Vibrio cholerae MZO-2] gi|229513098|ref|ZP_04402564.1| GTP-binding protein EngA [Vibrio cholerae TMA 21] gi|229523415|ref|ZP_04412822.1| GTP-binding protein EngA [Vibrio cholerae TM 11079-80] gi|229525408|ref|ZP_04414813.1| GTP-binding protein EngA [Vibrio cholerae bv. albensis VL426] gi|229530107|ref|ZP_04419497.1| GTP-binding protein EngA [Vibrio cholerae 12129(1)] gi|254225026|ref|ZP_04918640.1| GTP-binding protein [Vibrio cholerae V51] gi|124123903|gb|EAY42646.1| GTP-binding protein [Vibrio cholerae MZO-3] gi|125622413|gb|EAZ50733.1| GTP-binding protein [Vibrio cholerae V51] gi|149741747|gb|EDM55776.1| GTP-binding protein [Vibrio cholerae MZO-2] gi|229333881|gb|EEN99367.1| GTP-binding protein EngA [Vibrio cholerae 12129(1)] gi|229338989|gb|EEO04006.1| GTP-binding protein EngA [Vibrio cholerae bv. albensis VL426] gi|229339778|gb|EEO04793.1| GTP-binding protein EngA [Vibrio cholerae TM 11079-80] gi|229349991|gb|EEO14945.1| GTP-binding protein EngA [Vibrio cholerae TMA 21] gi|327483547|gb|AEA77954.1| GTP-binding protein EngA [Vibrio cholerae LMA3894-4] Length = 494 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 61/98 (62%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I + + + DTAG+R Sbjct: 207 KLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMKRDEREYVLIDTAGVRRR 266 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 ++ VEK + +T +E+A+++LL+ +++++ IS Sbjct: 267 KRINETVEKFSVVKTLQAIEDANVVLLV--VDARENIS 302 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD L + + DT GI ++ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGIDGSE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE + +++ ++ AD++L + Sbjct: 65 EGVETKMAQQSLAAIDEADVVLFM 88 >gi|282882100|ref|ZP_06290741.1| ribosome-associated GTPase EngA [Peptoniphilus lacrimalis 315-B] gi|281298130|gb|EFA90585.1| ribosome-associated GTPase EngA [Peptoniphilus lacrimalis 315-B] Length = 439 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 53/88 (60%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSLFN L+K++ +IVT+I GTTRD + + + DTAG+R+ Sbjct: 177 RVSIIGKPNVGKSSLFNYLSKEERSIVTNIAGTTRDAIDTKIIYKDNEYIFVDTAGLRKR 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 I +E+ + RT +E + + LLL Sbjct: 237 KKIKESIERYSVIRTLTAIERSSVCLLL 264 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 47/159 (29%), Positives = 74/159 (46%), Gaps = 19/159 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN + K ++I D PG TRD + Y + DT G+ D Sbjct: 6 VSIIGKPNVGKSTLFNKILGKKISITEDTPGVTRDRIYQTASWLDYSFLLVDTGGLDLKD 65 Query: 282 DIVEKEGIK-RTFLEVENADLILLLKE-----INSKKEIS---FPKNIDFIFIGTKSDLY 332 + + IK + + VE + +I+ L + + +EI+ N I K D Sbjct: 66 EDIFMSSIKAQVDIAVETSQVIIFLTDGIEGVSPTDREIANYLRKSNKKVILAVNKCDAK 125 Query: 333 STYTEEYD---------HLISSFTGEGLEELINKI-KSI 361 T YD +L+SS G GL +L++++ KSI Sbjct: 126 KTKENIYDFFELGLGEPYLVSSEQGTGLGDLLDEVTKSI 164 >gi|317452825|emb|CBL87848.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/82 (41%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ +++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHELELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKATQMSDLIL 90 >gi|304389543|ref|ZP_07371506.1| ribosome-associated GTPase EngA [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304327353|gb|EFL94588.1| ribosome-associated GTPase EngA [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 523 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/91 (37%), Positives = 54/91 (59%), Gaps = 9/91 (9%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ ++G N GKSSL N+L+ A+V+++PGTTRD + L+L+G DTAG+R Sbjct: 263 RVALVGRPNVGKSSLLNSLSGAGRAVVSEVPGTTRDPVDEVLELDGQQWVFVDTAGVRRR 322 Query: 281 DDIVEKE------GIKRTFLEVENADLILLL 305 V++ + RT +ENAD+ L+L Sbjct: 323 ---VKRSVGADYYSVLRTQAAIENADVALVL 350 Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 32/61 (52%) Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 + N + ++G N GKS+L N + + A+V D PG TRD +T D G + DT Sbjct: 83 VPNWPTLAVVGRPNVGKSTLVNRILGRREAVVLDEPGVTRDRVTYDAHWNGRNFHLVDTG 142 Query: 276 G 276 G Sbjct: 143 G 143 >gi|262192496|ref|ZP_06050647.1| GTP-binding protein EngA [Vibrio cholerae CT 5369-93] gi|262031655|gb|EEY50242.1| GTP-binding protein EngA [Vibrio cholerae CT 5369-93] Length = 494 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 61/98 (62%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I + + + DTAG+R Sbjct: 207 KLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMKRDEREYVLIDTAGVRRR 266 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 ++ VEK + +T +E+A+++LL+ +++++ IS Sbjct: 267 KRINETVEKFSVVKTLQAIEDANVVLLV--VDARENIS 302 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD L + + DT GI ++ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGIDGSE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE + +++ ++ AD++L + Sbjct: 65 EGVETKMAQQSLAAIDEADVVLFM 88 >gi|298346752|ref|YP_003719439.1| GTP-binding protein EngA [Mobiluncus curtisii ATCC 43063] gi|298236813|gb|ADI67945.1| GTP-binding protein EngA [Mobiluncus curtisii ATCC 43063] Length = 523 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/91 (37%), Positives = 54/91 (59%), Gaps = 9/91 (9%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ ++G N GKSSL N+L+ A+V+++PGTTRD + L+L+G DTAG+R Sbjct: 263 RVALVGRPNVGKSSLLNSLSGAGRAVVSEVPGTTRDPVDEVLELDGQQWVFVDTAGVRRR 322 Query: 281 DDIVEKE------GIKRTFLEVENADLILLL 305 V++ + RT +ENAD+ L+L Sbjct: 323 ---VKRSVGADYYSVLRTQAAIENADVALVL 350 Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 32/61 (52%) Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 + N + ++G N GKS+L N + + A+V D PG TRD +T D G + DT Sbjct: 83 VPNWPTLAVVGRPNVGKSTLVNRILGRREAVVLDEPGVTRDRVTYDAHWNGRNFHLVDTG 142 Query: 276 G 276 G Sbjct: 143 G 143 >gi|122700625|emb|CAL87901.1| GTPase [Helicobacter pylori] Length = 170 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/82 (41%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ +++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEMELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|160900447|ref|YP_001566029.1| GTP-binding protein EngA [Delftia acidovorans SPH-1] gi|238687162|sp|A9BMU9|DER_DELAS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|160366031|gb|ABX37644.1| small GTP-binding protein [Delftia acidovorans SPH-1] Length = 448 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 28/95 (29%), Positives = 55/95 (57%), Gaps = 3/95 (3%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273 ++ + ++ + G N GKS+L N ++ + D+PGTTRD +++ + G ++ D Sbjct: 176 DVAQKPIRLTVAGRPNVGKSTLINTWLGEERLVAFDMPGTTRDAISVPFERAGQKFELID 235 Query: 274 TAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305 TAG+R + +EK + +T +E+A+++LLL Sbjct: 236 TAGLRRKGRVFEAIEKFSVVKTLQAIESANVVLLL 270 Score = 40.0 bits (92), Expect = 0.73, Method: Compositional matrix adjust. Identities = 19/35 (54%), Positives = 22/35 (62%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 I ++G N GKS+LFN L K AIV D G TRD Sbjct: 5 IALVGRPNVGKSTLFNRLTKSRDAIVADFAGLTRD 39 >gi|319900091|ref|YP_004159819.1| ribosome-associated GTPase EngA [Bacteroides helcogenes P 36-108] gi|319415122|gb|ADV42233.1| ribosome-associated GTPase EngA [Bacteroides helcogenes P 36-108] Length = 437 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 53/88 (60%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G NAGKSS+ NA +D IVT+I GTTRD + + G+ + DTAGIR+ Sbjct: 177 RFAVVGRPNAGKSSIVNAFIGEDRNIVTEIAGTTRDSIYTRYNKFGFDFYLVDTAGIRKK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + + +E + R+ +EN+D+ +L+ Sbjct: 237 NKVNEDLEYYSVIRSIRSIENSDVCILM 264 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 1/91 (1%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277 G + I+G N GKS+LFN L K AIV + GTTRD + G + DT G + Sbjct: 2 GNLVAIVGRPNVGKSTLFNRLTKTRQAIVNEEAGTTRDRQYGKTEWLGREFSVVDTGGWV 61 Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEI 308 +DD+ E+E K+ + ++ AD+IL + ++ Sbjct: 62 VNSDDVFEEEIRKQVLMALDEADVILFVVDV 92 >gi|167041117|gb|ABZ05877.1| putative GTPase of unknown function [uncultured marine microorganism HF4000_001A02] Length = 438 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 50/142 (35%), Positives = 68/142 (47%), Gaps = 15/142 (10%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G ++ I+G N GKSSL NAL KK+ +IVT I GTTRD + L G + + DTAG+R Sbjct: 178 GMRLAIVGMPNVGKSSLTNALLKKEQSIVTPIAGTTRDSIDSVLKYYGNEITLVDTAGLR 237 Query: 279 ---ETDDIVEKEGIKRTFLEVENADLILLL--------KEINSKKEISFPKNIDFIFIGT 327 + D +E RT +E D+ L+L K+ S + K I + Sbjct: 238 KRSKVSDSIEFYSSLRTQRAIEYCDVALVLIDGEKGFSKQDKSILDYVIKKGKGLILLVN 297 Query: 328 KSDLYSTYTEEYDHLISSFTGE 349 K DL T H + FT E Sbjct: 298 KWDLVDKDT----HTMKDFTDE 315 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 33/85 (38%), Positives = 46/85 (54%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 I I+G N GKS+ FN + ++ AIV + G TRD + D+D G+ + DT G I E Sbjct: 6 IAIVGRPNVGKSTFFNRVLRQRKAIVDAMEGITRDRIYGDMDWVGHNLTFVDTGGYIPED 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 DI ++ V ADLILL+ Sbjct: 66 VDIFNSAIRQQAQAAVAEADLILLM 90 >gi|157374575|ref|YP_001473175.1| GTP-binding protein EngA [Shewanella sediminis HAW-EB3] gi|189037163|sp|A8FT74|DER_SHESH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|157316949|gb|ABV36047.1| small GTP-binding protein [Shewanella sediminis HAW-EB3] Length = 488 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/182 (25%), Positives = 84/182 (46%), Gaps = 31/182 (17%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D PGTTRD + I ++ +G + DTAG+R Sbjct: 201 KMAIIGKPNVGKSTLTNRILGEERVVVYDSPGTTRDSIYIPMERDGREYVMIDTAGVRRR 260 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS--------FPKNIDFIFI---- 325 + VEK + +T VE+ +++LL+ I++++ I+ F N + Sbjct: 261 SKVHETVEKFSVIKTLKAVEDCNVVLLI--IDAREGIAEQDLGLLGFALNAGRALVIAVN 318 Query: 326 ---GTKSDLYSTYTEEYD-----------HLISSFTGEGLEELINKIKSILSNKFKKLPF 371 G D+ E D H IS+ G G+ L ++ + +++ Sbjct: 319 KWDGIDQDIKDRVKSELDRRLGFIDFARIHFISALHGTGVGHLFESVQEAYDSATRRVST 378 Query: 372 SI 373 S+ Sbjct: 379 SM 380 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 49/89 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD L GY + DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAFLSGYEFIVVDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310 + +E +++ +E AD++L L + + Sbjct: 65 EGIETHMAEQSLAAIEEADVVLFLTDARA 93 >gi|149375007|ref|ZP_01892780.1| predicted GTPase [Marinobacter algicola DG893] gi|149360896|gb|EDM49347.1| predicted GTPase [Marinobacter algicola DG893] Length = 453 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/90 (36%), Positives = 53/90 (58%), Gaps = 3/90 (3%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G +I I+G N GKS+L N + +D IV D+PGTTRD + I + + DTAG+R Sbjct: 155 GIRIGIVGRPNVGKSTLVNRMLGEDRVIVYDMPGTTRDSVYIPFERMDNQYTLIDTAGVR 214 Query: 279 E---TDDIVEKEGIKRTFLEVENADLILLL 305 ++VEK I +T +++A +++L+ Sbjct: 215 RRKNVSEVVEKFSIIKTLQAIDDAHVVILV 244 >gi|153809063|ref|ZP_01961731.1| hypothetical protein BACCAC_03371 [Bacteroides caccae ATCC 43185] gi|149128396|gb|EDM19615.1| hypothetical protein BACCAC_03371 [Bacteroides caccae ATCC 43185] Length = 437 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 54/168 (32%), Positives = 80/168 (47%), Gaps = 22/168 (13%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277 G + I+G N GKS+LFN L K AIV + GTTRD + G + DT G + Sbjct: 2 GNLVAIVGRPNVGKSTLFNRLTKSRRAIVNEEAGTTRDRQYGKSEWLGREFSVVDTGGWV 61 Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEI-NSKKEISFP-------KNIDFIFIGTKS 329 +DDI E+E K+ L V+ AD+IL + ++ N ++ N I + K+ Sbjct: 62 VNSDDIFEEEIRKQVLLAVDEADVILFVVDVMNGVTDLDMQVATILRRANSPVIVVANKT 121 Query: 330 D---LYSTYTEEYD------HLISSFTGEGLEELINKIKSILSNKFKK 368 D L E Y + IS+ TG G +L++ ++ KFKK Sbjct: 122 DNNELQYNAPEFYKLGLGDPYCISAITGSGTGDLMD----LIVGKFKK 165 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G NAGKSS+ NA +D IVT+I GTTRD + + G+ + DTAGIR+ Sbjct: 177 RFAVVGRPNAGKSSIVNAFIGEDRNIVTEIAGTTRDSIYTRYNKFGFDFYLVDTAGIRKK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + + +E + R+ +E +D+ +L+ Sbjct: 237 NKVNEDLEYYSVIRSIRAIEGSDVCILM 264 >gi|117620764|ref|YP_856299.1| GTP-binding protein EngA [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|166224301|sp|A0KJ48|DER_AERHH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|117562171|gb|ABK39119.1| GTP-binding protein EngA [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 499 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/98 (36%), Positives = 60/98 (61%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 K I+G N GKS+L N + +D IV D+PGTTRD + I ++ + I DTAG+R Sbjct: 214 KFAIVGRPNVGKSTLTNRMLGEDRVIVYDMPGTTRDSVYIPMERDEQKYVIIDTAGVRRR 273 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + + VEK + +T +E+A++ LL+ I++++ I+ Sbjct: 274 GKVHETVEKFSVIKTLKAIEDANVCLLV--IDAQETIT 309 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD L + DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGELEFIVVDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + +E + +++ L +E AD++L + Sbjct: 65 EGIELKMAEQSLLAIEEADVVLFM 88 >gi|198283717|ref|YP_002220038.1| GTP-binding protein EngA [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667499|ref|YP_002426346.1| ribosome-associated GTPase EngA [Acidithiobacillus ferrooxidans ATCC 23270] gi|226741127|sp|B7JC34|DER_ACIF2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|238690897|sp|B5EJF7|DER_ACIF5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|198248238|gb|ACH83831.1| small GTP-binding protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218519712|gb|ACK80298.1| ribosome-associated GTPase EngA [Acidithiobacillus ferrooxidans ATCC 23270] Length = 449 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/101 (33%), Positives = 55/101 (54%), Gaps = 3/101 (2%) Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267 S+ + R G +I +LG N GKS+L N + + +V D PGTTRD + I + +G Sbjct: 166 SEDDTADAARKGPRIAMLGRPNVGKSTLVNTMLGEKRVLVFDEPGTTRDSIRIPYERQGK 225 Query: 268 LVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305 + DTAG+R + +EK + +T + AD++LL+ Sbjct: 226 PYVMIDTAGMRRRARVGEGLEKLSVLKTLSALREADVVLLV 266 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 11/99 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+ FN L + A+V D+PG TRD EG + DT G Sbjct: 5 IALVGRPNVGKSTFFNRLTRTREALVADLPGLTRDRHYGTAQFEGRQYLVVDTGGFEPE- 63 Query: 282 DIVEKEGI-----KRTFLEVENADLILLLKEINSKKEIS 315 E+EG+ +T L + AD I L +++K+ +S Sbjct: 64 ---EREGLVAAMAAQTRLAITEADAICFL--VDAKEGLS 97 >gi|104773911|ref|YP_618891.1| GTP-binding protein EngA [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116513918|ref|YP_812824.1| GTP-binding protein EngA [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|37999708|sp|Q8KH12|DER_LACDA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|122275312|sp|Q04AY6|DER_LACDB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|21633222|gb|AAM22484.1| conserved hypothetical GTP-binding protein [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103422992|emb|CAI97674.1| Putative GTP-binding protein [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116093233|gb|ABJ58386.1| Predicted GTPase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|325125585|gb|ADY84915.1| Probable GTP-binding protein engA [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 435 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/86 (37%), Positives = 48/86 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN + + VAIV D PG TRD G+ I DT GI D Sbjct: 6 VAIVGQPNVGKSTLFNRIINERVAIVEDRPGVTRDRNYARASWMGHQFSIIDTGGITWED 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKE 307 +++E + + +E AD+I++L + Sbjct: 66 STIDEEIRAQAEIAIEEADVIVMLAD 91 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 46/179 (25%), Positives = 80/179 (44%), Gaps = 29/179 (16%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 ++G N GKSS+ N L ++ IV + GTTRD + +G ++ DTAGIR + Sbjct: 179 VIGRPNVGKSSIVNRLLGEERVIVANEEGTTRDAIDTPFVKDGTKFRVVDTAGIRRRGKV 238 Query: 284 VEKE---GIKRTFLEVENADL-ILLLKEINSKKE-------ISFPKNIDFIFIGTKSDLY 332 EK + R +E +D+ IL+L +E + + I K DL Sbjct: 239 YEKTEKYSVMRAMSAMERSDVAILVLDASTGIREQDKHVAGYAHEAGLGMIIAVNKWDLP 298 Query: 333 -----------STYTEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLPFSI 373 + EE+ +L +S+ TG+ +++L +K + NK +++ S+ Sbjct: 299 KKDSSSGKDFEAVIREEFSYLDYAPIVFVSAKTGKNIDQLPKMVKEVYENKNQRIQSSV 357 >gi|160915095|ref|ZP_02077308.1| hypothetical protein EUBDOL_01103 [Eubacterium dolichum DSM 3991] gi|158432894|gb|EDP11183.1| hypothetical protein EUBDOL_01103 [Eubacterium dolichum DSM 3991] Length = 436 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G N GKSSL NA+ +D IV++I GTTRD + EG + DTAGIR Sbjct: 176 RFCLIGRPNVGKSSLVNAILDQDRVIVSNIEGTTRDAIDTPFTREGKDYVVIDTAGIRRR 235 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +EK + R +E +D++L++ Sbjct: 236 GKVYENIEKYSVLRAMSAIERSDVVLVV 263 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 45/84 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN + + +IV D PG TRD + + ++ DT GI+ D Sbjct: 6 VAIVGRPNVGKSTIFNRIIGERKSIVEDTPGVTRDRIYGKAEWLTKEFRLIDTGGIQLED 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++E + + +E AD I+ + Sbjct: 66 QDFQQEIQMQVEIAIEEADAIVFV 89 >gi|122701541|emb|CAL88160.1| GTPase [Helicobacter pylori] Length = 170 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/82 (41%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN L+++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLSRERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122701517|emb|CAL88148.1| GTPase [Helicobacter pylori] Length = 170 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/82 (41%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN L+++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLSRERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122700773|emb|CAL87975.1| GTPase [Helicobacter pylori] Length = 170 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/82 (41%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN L+++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLSRERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122701399|emb|CAL88089.1| GTPase [Helicobacter pylori] Length = 170 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/82 (41%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ +++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEMELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|213581531|ref|ZP_03363357.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 162 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 D VE +++ L +E AD++L + Sbjct: 65 DGVETRMAEQSLLAIEEADVVLFM 88 >gi|153872876|ref|ZP_02001641.1| Small GTP-binding protein domain [Beggiatoa sp. PS] gi|152070659|gb|EDN68360.1| Small GTP-binding protein domain [Beggiatoa sp. PS] Length = 515 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 30/91 (32%), Positives = 51/91 (56%), Gaps = 3/91 (3%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 G K+ I+G N GKS+L N + + I D PGTTRD + I + +G L + DTAG+ Sbjct: 227 QGIKVAIIGRPNVGKSTLVNRMLGYERVITFDQPGTTRDSIFIPFERDGQLYTLIDTAGV 286 Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLL 305 R + +EK + ++ +E +++++L Sbjct: 287 RRRARVSEKIEKFSVIKSLQAIETGNVVIML 317 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 51/161 (31%), Positives = 77/161 (47%), Gaps = 19/161 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 IVI+G N GKS+LFNAL K A+V D PG TRD + I DT G+ D Sbjct: 5 IVIVGRPNVGKSTLFNALTKTRDALVADQPGLTRDRRIGRGCVGDSDYWIIDTGGLSTED 64 Query: 282 DIVEKEGIKRTFLEVENADLILLLKE-----INSKKEIS-----FPKNIDFIFI----GT 327 D + + + L ++ AD +L L + +EI+ F I F+ I G Sbjct: 65 DAILERISHQARLAIKEADGVLFLVDGRGGLTGGDQEITQYLRRFNTPI-FLVINKAEGL 123 Query: 328 KSDLYST--YTEEYD--HLISSFTGEGLEELINKIKSILSN 364 + DL S Y ++ H IS+ +G+ +L++ + I+S Sbjct: 124 QKDLVSAEFYQLGFENIHAISAVHRQGINDLMDAVLPIISQ 164 >gi|122702451|emb|CAL88416.1| GTPase [Helicobacter pylori] Length = 170 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/102 (39%), Positives = 58/102 (56%), Gaps = 4/102 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGREVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI 320 ++ KE + +DLIL + K I S ++I + I Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREI 110 >gi|253567260|ref|ZP_04844710.1| GTP-binding protein engA [Bacteroides sp. 3_2_5] gi|251944091|gb|EES84610.1| GTP-binding protein engA [Bacteroides sp. 3_2_5] Length = 437 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/93 (38%), Positives = 52/93 (55%), Gaps = 1/93 (1%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277 G + I+G N GKS+LFN L K AIV D GTTRD + G + DT G + Sbjct: 2 GNLVAIVGRPNVGKSTLFNRLTKTRQAIVNDEAGTTRDRQYGKSEWLGREFSVVDTGGWV 61 Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINS 310 +DDI E+E K+ + V+ AD+IL + ++ + Sbjct: 62 VNSDDIFEEEIRKQVLMAVDEADVILFVVDVTN 94 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G NAGKSS+ NA ++ IVT+I GTTRD + + G+ + DTAGIR+ Sbjct: 177 RFAVVGRPNAGKSSIVNAFIGEERNIVTEIAGTTRDSIYTRYNKFGFDFYLVDTAGIRKK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + + +E + R+ +E AD+ +L+ Sbjct: 237 NKVNEDLEYYSVVRSIRAIEGADVCILM 264 >gi|260061763|ref|YP_003194843.1| GTP-binding protein EngA [Robiginitalea biformata HTCC2501] gi|88785895|gb|EAR17064.1| GTP-binding protein EngA [Robiginitalea biformata HTCC2501] Length = 412 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G NAGKSS NAL ++ IVTDI GTTRD + + G+ + DTAGIR Sbjct: 154 RFAVVGRPNAGKSSFINALIGEERYIVTDIAGTTRDSIDTRYNRFGFEFNLVDTAGIRRK 213 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E + R+ +E++D+ L+L Sbjct: 214 SKVKEDLEFYSVMRSVRAIEHSDVCLIL 241 >gi|317490873|ref|ZP_07949309.1| ribosome-associated GTPase EngA [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920420|gb|EFV41743.1| ribosome-associated GTPase EngA [Enterobacteriaceae bacterium 9_2_54FAA] Length = 495 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/98 (36%), Positives = 60/98 (61%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 KI I+G N GKS+L N + +D +V D+PGTTRD + I + + + DTAG+R Sbjct: 209 KIAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDSIYIPMVRDEREYVLIDTAGVRKR 268 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + D VEK + +T +E++++ LL+ I++++ IS Sbjct: 269 GKVTDTVEKFSVIKTLQAIEDSNVALLV--IDAREGIS 304 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L A+V D PG TRD ++ G+ I DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVSGHEFIIIDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE +++ + +E AD++L + Sbjct: 65 NGVETHMAEQSLMAIEEADIVLFM 88 >gi|138895798|ref|YP_001126251.1| GTP-binding protein EngA [Geobacillus thermodenitrificans NG80-2] gi|196248680|ref|ZP_03147380.1| small GTP-binding protein [Geobacillus sp. G11MC16] gi|166198718|sp|A4IQA2|DER_GEOTN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|134267311|gb|ABO67506.1| GTP-binding protein-like protein [Geobacillus thermodenitrificans NG80-2] gi|196211556|gb|EDY06315.1| small GTP-binding protein [Geobacillus sp. G11MC16] Length = 436 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/110 (33%), Positives = 58/110 (52%), Gaps = 3/110 (2%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L + ++ H + E + K ++G N GKSSL NA+ ++ IV+DI GTTRD + Sbjct: 155 LLDAVARHFPKDHGQEYEEDVIKFCLIGRPNVGKSSLVNAILGEERVIVSDIAGTTRDAV 214 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305 EG I DTAG+R+ I EK + R +E +D++L++ Sbjct: 215 DTSFVREGQKYVIIDTAGMRKRGKIYESTEKYSVLRALRAIERSDVVLVV 264 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/84 (28%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN + + ++IV D+PG TRD + + + + DT GI D Sbjct: 6 VAIVGRPNVGKSTIFNRIVGERISIVEDVPGVTRDRIYSSAEWLNHSFYLIDTGGIDIGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + + ++ + ++ AD+I+ + Sbjct: 66 EPLLVQIRQQAEIAIDEADVIIFM 89 >gi|122702357|emb|CAL88369.1| GTPase [Helicobacter pylori] Length = 170 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/82 (41%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN L+++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLSRERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|294788428|ref|ZP_06753671.1| ribosome-associated GTPase EngA [Simonsiella muelleri ATCC 29453] gi|294483859|gb|EFG31543.1| ribosome-associated GTPase EngA [Simonsiella muelleri ATCC 29453] Length = 489 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/96 (34%), Positives = 59/96 (61%), Gaps = 5/96 (5%) Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---E 279 ++G N GKS+L NA+ ++ I D+ GTTRD + ID + EG I DTAG+R + Sbjct: 179 AVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSIHIDFEREGKPFTIIDTAGVRKRGK 238 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D+ VEK + + +E A++ +L+ ++++++I+ Sbjct: 239 VDEAVEKFSVIKAMQAIEAANVAVLV--LDAQQDIA 272 Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280 I ++G N GKS+LFN L K A+V D+PG TRD + + DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTKTKDALVHDLPGLTRDRHYGHGRVGSKPYLVVDTGGFEPVV 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 D + E K+T V+ AD ++ L Sbjct: 65 DSGILHEMAKQTLQAVDEADAVIFL 89 >gi|4467671|emb|CAB37787.1| GTP-binding protein homologue [Helicobacter pylori] Length = 170 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/84 (40%), Positives = 51/84 (60%), Gaps = 1/84 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTR++ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRNINNRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ KE + +DLIL + Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYV 92 >gi|325855153|ref|ZP_08171776.1| ribosome biogenesis GTPase Der [Prevotella denticola CRIS 18C-A] gi|325483890|gb|EGC86834.1| ribosome biogenesis GTPase Der [Prevotella denticola CRIS 18C-A] Length = 437 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G NAGKSS+ NA +D IVT+I GTTRD + G+ + DTAGIR Sbjct: 177 RFAVVGRPNAGKSSIINAFIGEDRNIVTEIAGTTRDSIYTRYTKFGFDFYLVDTAGIRRK 236 Query: 281 DDIVEK---EGIKRTFLEVENADLILLL 305 + + E + R+ +EN+D+ +L+ Sbjct: 237 NKVTEDLEFYSVMRSIRSIENSDVCILM 264 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/85 (40%), Positives = 46/85 (54%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 + I+G N GKS+LFN L + AIV+D GTTRD G + DT G + ++ Sbjct: 5 VAIVGRPNVGKSTLFNRLTQTRHAIVSDTAGTTRDRQYGKCQWNGREFSVVDTGGWVVKS 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 DDI E K+ + E ADL+L L Sbjct: 65 DDIFEDAIRKQVLVATEEADLVLFL 89 >gi|154505327|ref|ZP_02042065.1| hypothetical protein RUMGNA_02842 [Ruminococcus gnavus ATCC 29149] gi|153794370|gb|EDN76790.1| hypothetical protein RUMGNA_02842 [Ruminococcus gnavus ATCC 29149] Length = 450 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/109 (37%), Positives = 61/109 (55%), Gaps = 5/109 (4%) Query: 201 NDISSHISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259 +++ SH +G GE + KI I+G N GKSS+ N L ++ IV+DI GTTRD + Sbjct: 167 DEVVSHFPEGA-GETEEDERPKIAIVGKPNVGKSSIVNKLLGENRVIVSDIAGTTRDAID 225 Query: 260 IDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305 + E DTAG+R + I +E+ I RT VE AD++L++ Sbjct: 226 TAIKHEDREYIFIDTAGLRRKNKIKEELERFSIIRTVTAVERADVVLMV 274 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 1/88 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFN LA + ++IV D PG TRD + D+ + DT GI ++ Sbjct: 14 VAIVGRPNVGKSTLFNTLAGERISIVKDTPGVTRDRIYADVSWLDKEFTMIDTGGIEPDS 73 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308 DI+ + ++ + ++ AD+I+ + ++ Sbjct: 74 SDIILSQMREQAQIAIDTADVIVFITDV 101 >gi|122702161|emb|CAL88271.1| GTPase [Helicobacter pylori] Length = 170 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/82 (41%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN L+++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLSRERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|254423770|ref|ZP_05037488.1| GTPase, putative [Synechococcus sp. PCC 7335] gi|196191259|gb|EDX86223.1| GTPase, putative [Synechococcus sp. PCC 7335] Length = 449 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/95 (36%), Positives = 57/95 (60%), Gaps = 11/95 (11%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL------DLEGYLVKISD 273 Y++ I+G N GKSS+ NA ++ +IV+ I GTTRD + + + D + Y ++ D Sbjct: 160 YRVAIVGRPNVGKSSILNAFVGENRSIVSPISGTTRDAIDMVVTRGDGDDQKRY--RLID 217 Query: 274 TAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305 TAGIR+ ++ E GI R F ++ AD++LL+ Sbjct: 218 TAGIRKKKNVDFGPEYFGINRAFKAIKRADVVLLV 252 >gi|53715371|ref|YP_101363.1| GTP-binding protein EngA [Bacteroides fragilis YCH46] gi|60683339|ref|YP_213483.1| GTP-binding protein EngA [Bacteroides fragilis NCTC 9343] gi|255011702|ref|ZP_05283828.1| GTP-binding protein EngA [Bacteroides fragilis 3_1_12] gi|265767858|ref|ZP_06095390.1| ribosome-associated GTPase EngA [Bacteroides sp. 2_1_16] gi|313149536|ref|ZP_07811729.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|81313609|sp|Q5L8K8|DER_BACFN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|81824906|sp|Q64NV3|DER_BACFR RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|52218236|dbj|BAD50829.1| putative phosphoglycerate dehydrogenase [Bacteroides fragilis YCH46] gi|60494773|emb|CAH09579.1| putative GTP-binding protein [Bacteroides fragilis NCTC 9343] gi|263252530|gb|EEZ24058.1| ribosome-associated GTPase EngA [Bacteroides sp. 2_1_16] gi|301164828|emb|CBW24388.1| putative GTP-binding protein [Bacteroides fragilis 638R] gi|313138303|gb|EFR55663.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 437 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/93 (38%), Positives = 52/93 (55%), Gaps = 1/93 (1%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277 G + I+G N GKS+LFN L K AIV D GTTRD + G + DT G + Sbjct: 2 GNLVAIVGRPNVGKSTLFNRLTKTRQAIVNDEAGTTRDRQYGKSEWLGREFSVVDTGGWV 61 Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINS 310 +DDI E+E K+ + V+ AD+IL + ++ + Sbjct: 62 VNSDDIFEEEIRKQVLMAVDEADVILFVVDVTN 94 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G NAGKSS+ NA ++ IVT+I GTTRD + + G+ + DTAGIR+ Sbjct: 177 RFAVVGRPNAGKSSIVNAFIGEERNIVTEIAGTTRDSIYTRYNKFGFDFYLVDTAGIRKK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + + +E + R+ +E AD+ +L+ Sbjct: 237 NKVNEDLEYYSVVRSIRAIEGADVCILM 264 >gi|327312576|ref|YP_004328013.1| ribosome biogenesis GTPase Der [Prevotella denticola F0289] gi|326944058|gb|AEA19943.1| ribosome biogenesis GTPase Der [Prevotella denticola F0289] Length = 437 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G NAGKSS+ NA +D IVT+I GTTRD + G+ + DTAGIR Sbjct: 177 RFAVVGRPNAGKSSIINAFIGEDRNIVTEIAGTTRDSIYTRYTKFGFDFYLVDTAGIRRK 236 Query: 281 DDIVEK---EGIKRTFLEVENADLILLL 305 + + E + R+ +EN+D+ +L+ Sbjct: 237 NKVTEDLEFYSVMRSIRSIENSDVCILM 264 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/85 (40%), Positives = 46/85 (54%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 + I+G N GKS+LFN L + AIV+D GTTRD G + DT G + ++ Sbjct: 5 VAIVGRPNVGKSTLFNRLTQTRHAIVSDTAGTTRDRQYGKCQWNGREFSVVDTGGWVVKS 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 DDI E K+ + E ADL+L L Sbjct: 65 DDIFEDAIRKQVLVATEEADLVLFL 89 >gi|260771392|ref|ZP_05880317.1| GTP-binding protein EngA [Vibrio furnissii CIP 102972] gi|260613518|gb|EEX38712.1| GTP-binding protein EngA [Vibrio furnissii CIP 102972] gi|315180972|gb|ADT87886.1| GTP-binding protein [Vibrio furnissii NCTC 11218] Length = 495 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 61/98 (62%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I + + + DTAG+R Sbjct: 208 KLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMQRDEREYVLIDTAGVRRR 267 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 ++ VEK + +T +E+A+++LL+ +++++ IS Sbjct: 268 KRINETVEKFSVVKTLKAIEDANVVLLV--VDARENIS 303 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD L + + DT GI ++ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGIDGSE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE + ++ ++ AD++L + Sbjct: 65 EGVETKMAAQSLAAIDEADVVLFM 88 >gi|304317178|ref|YP_003852323.1| ribosome-associated GTPase EngA [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778680|gb|ADL69239.1| ribosome-associated GTPase EngA [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 439 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI +G N GKSSL N + ++ AIV+DIPGTTRD L + + I DTAG+R+ Sbjct: 178 KICFIGKPNVGKSSLVNKILGEERAIVSDIPGTTRDALDTYFEKDNKKYVIIDTAGMRKK 237 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLL 305 +D +E+ + R ++ +D+ +L+ Sbjct: 238 GRIEDKIERYSVLRALSAIDRSDICILV 265 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 34/92 (36%), Positives = 50/92 (54%), Gaps = 8/92 (8%) Query: 219 GYKIV-ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 Y +V I+G N GKS+LFN + + ++IV D PG TRD + + + G + DT G+ Sbjct: 2 AYPMVGIVGRPNVGKSTLFNKITGQRISIVEDKPGVTRDRIYYETEWLGRKFILVDTGGL 61 Query: 278 RETDDIVEKEGIKRTFLEVENA----DLILLL 305 E D E E + ++VE A DLIL + Sbjct: 62 -EPDS--EDEFFSKIRMQVEAALKTVDLILFV 90 >gi|226503143|ref|NP_001146320.1| hypothetical protein LOC100279896 [Zea mays] gi|219886617|gb|ACL53683.1| unknown [Zea mays] Length = 653 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/93 (36%), Positives = 51/93 (54%), Gaps = 7/93 (7%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280 I I+G N GKSS+ NAL +D IV+ + GTTRD + + +G K+ DTAGIR Sbjct: 363 IAIVGRPNVGKSSILNALVGEDRTIVSPVSGTTRDAIDTEFTTADGEKYKLIDTAGIRRR 422 Query: 281 DDIV------EKEGIKRTFLEVENADLILLLKE 307 ++ E +KR F + +D++ L+ E Sbjct: 423 TAVISAGSTTESLSVKRAFRAIRRSDVVALVIE 455 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 31/59 (52%), Gaps = 7/59 (11%) Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 K +S HI L K+ I+G N GKS+LFN L + AIV D PG TRD L Sbjct: 140 KTSVSKHIPDNLLP-------KVAIIGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRL 191 >gi|126668584|ref|ZP_01739538.1| GTP-binding protein EngA [Marinobacter sp. ELB17] gi|126626989|gb|EAZ97632.1| GTP-binding protein EngA [Marinobacter sp. ELB17] Length = 474 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 54/90 (60%), Gaps = 3/90 (3%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G +I I+G N GKS+L N + ++ +V D+PGTTRD + I + G + DTAG+R Sbjct: 176 GIRIGIVGRPNVGKSTLVNRMLGEERVVVYDLPGTTRDSIYIPYERLGQEYTLIDTAGVR 235 Query: 279 E---TDDIVEKEGIKRTFLEVENADLILLL 305 ++VEK I +T +++A +++L+ Sbjct: 236 RRKNVREVVEKFSIIKTLQAIDDAHVVILV 265 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 45/84 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN + + A+V D PG TRD + + E + DT G+ + Sbjct: 5 IALVGRPNVGKSTLFNQMTRSRDALVADFPGLTRDRKYGEGNYENQRFIVIDTGGLMGDE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ K++ VE AD++L + Sbjct: 65 LGLDAAMAKQSLQAVEEADIVLFI 88 >gi|213027904|ref|ZP_03342351.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 153 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG DT GI T+ Sbjct: 16 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGTE 75 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 D VE +++ L +E AD++L + Sbjct: 76 DGVETRMAEQSLLAIEEADVVLFM 99 >gi|78484970|ref|YP_390895.1| small GTP-binding protein domain-containing protein [Thiomicrospira crunogena XCL-2] gi|78363256|gb|ABB41221.1| GTP-binding protein [Thiomicrospira crunogena XCL-2] Length = 480 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 55/90 (61%), Gaps = 3/90 (3%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G ++ ++G N GKS+L N + ++ + D+PGTTRD + + + +G L + DTAG+R Sbjct: 180 GIRVAVIGRPNVGKSTLINRMIGEERVVAFDMPGTTRDSIYVPFERQGELYTLIDTAGVR 239 Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLL 305 +I +EK I + +E++++++L+ Sbjct: 240 RRKNIKEKIEKFSIVKAIEAMESSNVVVLV 269 Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust. Identities = 19/35 (54%), Positives = 23/35 (65%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 I ++G N GKS+LFN L + AIV D PG TRD Sbjct: 6 IALVGRPNVGKSTLFNRLTRSRDAIVADYPGLTRD 40 >gi|171463406|ref|YP_001797519.1| small GTP-binding protein [Polynucleobacter necessarius subsp. necessarius STIR1] gi|238689056|sp|B1XU78|DER_POLNS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|171192944|gb|ACB43905.1| small GTP-binding protein [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 454 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/179 (25%), Positives = 81/179 (45%), Gaps = 31/179 (17%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI ++G N GKS+L N L ++ I D+PGTTRD + + + G + DTAG+R Sbjct: 182 KIAVVGRPNVGKSTLINKLIGEERVIAFDMPGTTRDAIEVPFERNGKPYILVDTAGLRRR 241 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS----------FPKNIDFIFIGT 327 + +EK + +T + + ++++L+ ++++++IS + Sbjct: 242 GKVFEAIEKFSVVKTLQAIADCNVVILM--LDAQQDISEQDAHIAGFIVEAGRALVVAVN 299 Query: 328 KSDLYSTYTEEYD----------------HLISSFTGEGLEELINKIKSILSNKFKKLP 370 K D TY +E H IS+ G GL++L + + + KLP Sbjct: 300 KWDGIDTYVKERARLEIAQKLRFLDFANVHPISAKKGTGLKDLFKDVDAAYAAAMAKLP 358 Score = 40.0 bits (92), Expect = 0.77, Method: Compositional matrix adjust. Identities = 19/35 (54%), Positives = 23/35 (65%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 I I+G SN GKS+LFN L + A+V D G TRD Sbjct: 5 ITIVGRSNVGKSTLFNRLTRSRDALVADFSGLTRD 39 >gi|158522145|ref|YP_001530015.1| small GTP-binding protein [Desulfococcus oleovorans Hxd3] gi|226741135|sp|A8ZU05|DER_DESOH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|158510971|gb|ABW67938.1| small GTP-binding protein [Desulfococcus oleovorans Hxd3] Length = 458 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 +VILG N GKS+LFN L + A+V D+PG TRD L D++ G + DT G D Sbjct: 5 VVILGRPNVGKSTLFNRLTRTQNALVDDMPGVTRDRLYGDVEWNGVFFSLVDTGGFLSGD 64 Query: 282 DIVEKEGIK-RTFLEVENADLILLL 305 D I+ + ++ AD +LL+ Sbjct: 65 DDFFMPHIQSQIHRAIDEADAVLLV 89 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/88 (31%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ ++G N GKS+L N + ++ IV+D+PGTTR+ + +++G + DTAG+R Sbjct: 177 KLAVVGRPNVGKSTLINRILGQERMIVSDVPGTTRESVDTVCEIDGRSYLLIDTAGLRRK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +EK +T ++ D+ L+L Sbjct: 237 SRVSVKLEKFSAIKTLKSLDRCDIALIL 264 >gi|254445513|ref|ZP_05058989.1| GTPase, putative [Verrucomicrobiae bacterium DG1235] gi|198259821|gb|EDY84129.1| GTPase, putative [Verrucomicrobiae bacterium DG1235] Length = 468 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/58 (50%), Positives = 40/58 (68%), Gaps = 3/58 (5%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 + + I+G N GKS LFN LA K ++IV D+PG TRD++T DLD +GY + DT G+ Sbjct: 3 FTVAIVGRPNVGKSRLFNRLAGKRISIVHDMPGVTRDIITRDLD-DGYT--LMDTGGM 57 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 8/93 (8%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-----EGYLVKISDTA 275 K+ +G N GKSSL N L + + IV+D+PGTTRD + + E + ++DTA Sbjct: 184 KVCFIGRPNVGKSSLSNCLVQSERFIVSDVPGTTRDSIEMPFVWKSKRGEDWHFMLTDTA 243 Query: 276 GIRETDDI---VEKEGIKRTFLEVENADLILLL 305 GIR+ + VE R+ + + D++ ++ Sbjct: 244 GIRKQTKLNSSVEYFSRVRSLDAIRDVDVVFMV 276 >gi|224025980|ref|ZP_03644346.1| hypothetical protein BACCOPRO_02731 [Bacteroides coprophilus DSM 18228] gi|224019216|gb|EEF77214.1| hypothetical protein BACCOPRO_02731 [Bacteroides coprophilus DSM 18228] Length = 437 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/91 (39%), Positives = 51/91 (56%), Gaps = 1/91 (1%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277 G + I+G N GKS+LFN L K AIV + GTTRD + G + DT G + Sbjct: 2 GNLVAIVGRPNVGKSTLFNRLTKTRQAIVNEQAGTTRDRQYGKSEWLGKEFSVVDTGGWV 61 Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEI 308 +DD+ E+E K+ L VE AD+IL + ++ Sbjct: 62 VNSDDVFEEEIRKQVLLAVEEADVILFVVDV 92 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G NAGKSS+ NA ++ IVTDI GTTRD + D G+ + DTAGIR+ Sbjct: 177 RFAVVGRPNAGKSSIINAFIGEERNIVTDIAGTTRDSIYTRYDKFGFDFYLVDTAGIRKK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + + +E + R+ +E +D+ +L+ Sbjct: 237 NKVSEDLEYYSVIRSIRAIEGSDVCILM 264 >gi|122702171|emb|CAL88276.1| GTPase [Helicobacter pylori] Length = 170 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/82 (41%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN L+++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLSRERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|261856783|ref|YP_003264066.1| ribosome-associated GTPase EngA [Halothiobacillus neapolitanus c2] gi|261837252|gb|ACX97019.1| ribosome-associated GTPase EngA [Halothiobacillus neapolitanus c2] Length = 567 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 ++ ++G N GKS+L N L +D + D PGTTRD + I + G + DTAG+R Sbjct: 181 RVALIGRPNVGKSTLTNRLLGEDRVLAFDQPGTTRDSIYIPFEQNGKAYTLIDTAGVRRR 240 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305 ++++EK I +T +E A++++L+ Sbjct: 241 ARVNEMIEKFSIVKTLQAIEAANVVILV 268 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 41/84 (48%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN + + A+V D G TRD + EG + DT G+ Sbjct: 5 IALVGRPNVGKSTLFNQMTRSRAALVADYAGLTRDRQYGSAEHEGRDFIVIDTGGLTGER 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 +E + + +E AD ++ + Sbjct: 65 GGIEALMQDQAWAAIEEADCVVFM 88 >gi|121997392|ref|YP_001002179.1| GTP-binding protein EngA [Halorhodospira halophila SL1] gi|166198720|sp|A1WUL5|DER_HALHL RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|121588797|gb|ABM61377.1| small GTP-binding protein [Halorhodospira halophila SL1] Length = 472 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 3/93 (3%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 G + ++G N GKS+L N L ++ +V D PGTTRD + + + +G + DTAG+ Sbjct: 176 GGIPVAMIGRPNVGKSTLVNRLLGEERVVVYDEPGTTRDSIAVPFERDGQHYTLIDTAGV 235 Query: 278 R---ETDDIVEKEGIKRTFLEVENADLILLLKE 307 R + VEK + +T +E A +++L+ + Sbjct: 236 RRRARVQETVEKFSVVKTLEAIERASVVMLVTD 268 Score = 41.2 bits (95), Expect = 0.37, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 31/58 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 I ++G N GKS+LFN L A+V D PG TRD + +G + DT G+ E Sbjct: 5 IALVGRPNVGKSTLFNRLTGSRDALVADHPGLTRDRQYGIVRHQGGHAVVVDTGGMGE 62 >gi|332830164|gb|EGK02792.1| GTP-binding protein engA [Dysgonomonas gadei ATCC BAA-286] Length = 437 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/92 (42%), Positives = 57/92 (61%), Gaps = 11/92 (11%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD---LEGYLVKISDTAGI 277 +I I+G NAGKSS NAL ++ IVT+I GTTRD + D ++ YLV DTAGI Sbjct: 177 RIAIVGRPNAGKSSFVNALMDEERNIVTNIAGTTRDSIYTRFDRFNMDFYLV---DTAGI 233 Query: 278 RE----TDDIVEKEGIKRTFLEVENADLILLL 305 R+ T+D+ E + R+ +EN+D+ +L+ Sbjct: 234 RKKGKVTEDL-EYYSVIRSIKAIENSDVCVLM 264 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/91 (37%), Positives = 50/91 (54%), Gaps = 1/91 (1%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277 G + I+G N GKS+LFN L + AIV + GTTRD + G + DT G + Sbjct: 2 GNLVAIVGRPNVGKSTLFNRLTESRQAIVDETSGTTRDRQYGKTEWGGQEFSLVDTGGWV 61 Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEI 308 +DD+ E E K+ + +E AD+IL L ++ Sbjct: 62 VNSDDVFESEINKQVSIAIEEADVILFLVDV 92 >gi|283955809|ref|ZP_06373300.1| putative GTP-binding protein [Campylobacter jejuni subsp. jejuni 1336] gi|283792764|gb|EFC31542.1| putative GTP-binding protein [Campylobacter jejuni subsp. jejuni 1336] Length = 460 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 55/85 (64%), Gaps = 3/85 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I+++G N GKSSLFN +A++ +AI +DI GTTRD ++ + + D+ G+ E+D Sbjct: 4 IILIGKPNVGKSSLFNRMARQRIAITSDISGTTRDTNKTEIHIHSKKAMLIDSGGLDESD 63 Query: 282 DIVEKEGIKRTFLEV-ENADLILLL 305 ++ + +K+ L+V + +D+IL L Sbjct: 64 ELF--KNVKKNTLKVAKESDIILYL 86 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 80/157 (50%), Gaps = 27/157 (17%) Query: 154 LSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGK-- 211 L LY +W+ K H F+ D EEE++++F H +GK Sbjct: 149 LDELY-EWLGKFLH-EEFLIPD----EEENLEDFLE----------------HYEEGKEF 186 Query: 212 -LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270 E+ +N ++ I+G N GKSSL NAL K++ ++V+ I GTT D + + + +++ Sbjct: 187 QFKEVDQNHIRVGIVGRVNVGKSSLLNALVKQERSVVSSIAGTTIDPVNESVVHKDKVIE 246 Query: 271 ISDTAGIRETDDI--VEKEGIKRTFLEVENADLILLL 305 DTAGIR+ I +E+ + RT + ++ + LL+ Sbjct: 247 FVDTAGIRKRGKIQGLERFALNRTEKILSHSQIALLV 283 >gi|258611783|ref|ZP_05711645.1| GTP-binding protein engA [Listeria monocytogenes FSL R2-503] gi|258606169|gb|EEW18777.1| GTP-binding protein engA [Listeria monocytogenes FSL R2-503] Length = 345 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/115 (32%), Positives = 63/115 (54%), Gaps = 5/115 (4%) Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262 + +H + + E + K ++G N GKSS+ NAL +D IV+DI GTTRD + Sbjct: 159 VRAHFPKEEEEEYPDDTVKFSLIGRPNVGKSSILNALLGEDRVIVSDIAGTTRDAIDTTY 218 Query: 263 DLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEI 314 +G + DTAG+R+ + EK + R +E +D++L++ IN+++ I Sbjct: 219 TFDGQDYVMIDTAGMRKRGKVYESTEKYSVLRAMRAIERSDVVLVV--INAEEGI 271 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN + + V+IV D+PG TRD + + G I DT GI +D Sbjct: 6 VAIVGRPNVGKSTIFNRIVGERVSIVEDVPGVTRDRIYNSAEWLGKEFNIIDTGGIDLSD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + ++ + + ++ AD+I+ + Sbjct: 66 EPFLEQIRAQAEIAIDEADVIIFI 89 >gi|227356207|ref|ZP_03840596.1| GTP-binding protein [Proteus mirabilis ATCC 29906] gi|227163671|gb|EEI48587.1| GTP-binding protein [Proteus mirabilis ATCC 29906] Length = 501 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/98 (34%), Positives = 61/98 (62%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G + DTAG+R+ Sbjct: 215 KLAIVGRPNVGKSTLTNRMLGEERVVVYDMPGTTRDSIYIPMERDGKEYILIDTAGVRKR 274 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + VEK + +T +E+ ++ LL+ I++++ IS Sbjct: 275 GKVKETVEKFSVIKTLQAIEDCNVALLV--IDAREGIS 310 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L + A+V D PG TRD +L+G I DT GI + Sbjct: 10 IALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAELDGEEFIIIDTGGIDGAE 69 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE ++ ++ AD++L L Sbjct: 70 EGVETHMASQSLQAIQEADIVLFL 93 >gi|122701591|emb|CAL88185.1| GTPase [Helicobacter pylori] Length = 170 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/82 (41%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + ++LIL Sbjct: 69 ALLSKEIKALNLKAAQMSNLIL 90 >gi|237737857|ref|ZP_04568338.1| GTP-binding protein [Fusobacterium mortiferum ATCC 9817] gi|229419737|gb|EEO34784.1| GTP-binding protein [Fusobacterium mortiferum ATCC 9817] Length = 440 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/90 (41%), Positives = 54/90 (60%), Gaps = 7/90 (7%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGIR 278 K+ I+G NAGKSSL N LA ++ IV+DI GTTRD + ++ D + Y+ I DTAGIR Sbjct: 178 KLAIIGKPNAGKSSLVNRLAGEERTIVSDIAGTTRDAIDTIVEFDEKKYM--IIDTAGIR 235 Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLL 305 + +E + R ++ AD+ LL+ Sbjct: 236 RKSKVEESLEYYSVLRAIKTIKRADVCLLM 265 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 42/139 (30%), Positives = 70/139 (50%), Gaps = 17/139 (12%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFN L VAIV D+PG TRD L + + G + DT G+ Sbjct: 5 VAIVGRPNVGKSTLFNNLVGDRVAIVDDMPGVTRDRLYRETEWNGTEFVVVDTGGLEPRN 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE----INS-KKEISF---PKNIDFI--------F 324 +D + + ++ + + AD+IL + + +N +EI++ KN I F Sbjct: 65 NDFMMTKIKQQAEVAMNEADVILFVVDGKCGVNPLDEEIAYILRKKNKPIILCVNKIDNF 124 Query: 325 IGTKSDLYSTYTEEYDHLI 343 + + D+Y + ++HLI Sbjct: 125 LEQQDDVYDFWALGFEHLI 143 >gi|49473957|ref|YP_031999.1| GTP-binding protein EngA [Bartonella quintana str. Toulouse] gi|81696063|sp|Q6G0H5|DER_BARQU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|49239460|emb|CAF25811.1| GTP-binding protein [Bartonella quintana str. Toulouse] Length = 477 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 74/158 (46%), Gaps = 24/158 (15%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET- 280 I ++G N GKS+LFN L + +A+V D PG TRD +L+ + DTAG+ E Sbjct: 5 IAVVGRPNVGKSTLFNRLVGQKLALVCDKPGVTRDRRIHAAELQDLCFDVIDTAGLEEAG 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF-----------IFIGTKS 329 D +E T + ADLIL + ++K I+ P +++F + + KS Sbjct: 65 DHTLEGRMCSHTKAAINEADLILFM--FDAKSGIT-PSDLNFASLVRKSGKPIVLVANKS 121 Query: 330 DLYSTYTEEYDHL---------ISSFTGEGLEELINKI 358 + + EY+ IS+ G GL +L + I Sbjct: 122 ESKAAVGVEYEAWSLGLGEPCPISAEHGLGLSDLRDAI 159 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 42/78 (53%) Query: 209 QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL 268 +G + + + +I + G N GKS+L N + +D + G TRD +++D + G Sbjct: 195 KGSVCDESKQPLRIAVAGRPNTGKSTLINRMLGQDRLLTGPEAGLTRDSISVDWEWRGRH 254 Query: 269 VKISDTAGIRETDDIVEK 286 +K+ DTAG+R I EK Sbjct: 255 IKLFDTAGLRRKSKIQEK 272 >gi|313896288|ref|ZP_07829841.1| ribosome biogenesis GTPase Der [Selenomonas sp. oral taxon 137 str. F0430] gi|312975087|gb|EFR40549.1| ribosome biogenesis GTPase Der [Selenomonas sp. oral taxon 137 str. F0430] Length = 441 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/86 (39%), Positives = 52/86 (60%), Gaps = 3/86 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--E 279 + ++G N GKS+LFN + KK ++IV D+PG TRD + +D + + I DT GI E Sbjct: 6 VAVVGRPNVGKSTLFNQIGKKRISIVDDMPGVTRDRIYMDAEWLNHEFTIIDTGGIEFDE 65 Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305 +D I+ + + L +E AD+IL L Sbjct: 66 SDHIL-RSMRSQAELAMEEADVILFL 90 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/96 (35%), Positives = 55/96 (57%), Gaps = 5/96 (5%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKSSL N L ++ IV+D+PGTTRD + +G + DTAG+R Sbjct: 179 IAVVGRPNVGKSSLVNRLLGEERVIVSDVPGTTRDAIDTHFTRDGAKYLLIDTAGMRRKG 238 Query: 282 DI---VEKEGIKRTFLEVENADLILLLKEINSKKEI 314 I VE+ + R+ ++ A ++L++ IN+ + I Sbjct: 239 KITLPVERYSVMRSLRAIDRAGVVLMV--INAAEGI 272 >gi|254786612|ref|YP_003074041.1| GTP-binding protein EngA [Teredinibacter turnerae T7901] gi|259645886|sp|C5BLV6|DER_TERTT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|237684664|gb|ACR11928.1| GTP-binding protein EngA [Teredinibacter turnerae T7901] Length = 464 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 54/88 (61%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + ID + + + DTAG+R Sbjct: 178 KMAIIGRPNVGKSTLVNRMLGEERVVVFDMPGTTRDSIYIDYERDEKHYTLIDTAGVRRR 237 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 ++ VEK I +T + +A++++L+ Sbjct: 238 KNVKLTVEKFSIIKTLQAINDANVVILV 265 Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 45/84 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L K AIV + G TRD D + EG + DT GI + Sbjct: 5 IALVGRPNVGKSTLFNRLTKTRDAIVANFAGLTRDRKYGDAEFEGKRFIVVDTGGISGDE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + ++ +++ + +D+IL L Sbjct: 65 EGIDSVMAEQSLQAIAESDIILFL 88 >gi|197285696|ref|YP_002151568.1| GTP-binding protein EngA [Proteus mirabilis HI4320] gi|238693198|sp|B4EZS9|DER_PROMH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|194683183|emb|CAR43820.1| GTP-binding protein [Proteus mirabilis HI4320] Length = 496 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/98 (34%), Positives = 61/98 (62%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ +G + DTAG+R+ Sbjct: 210 KLAIVGRPNVGKSTLTNRMLGEERVVVYDMPGTTRDSIYIPMERDGKEYILIDTAGVRKR 269 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + VEK + +T +E+ ++ LL+ I++++ IS Sbjct: 270 GKVKETVEKFSVIKTLQAIEDCNVALLV--IDAREGIS 305 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L + A+V D PG TRD +L+G I DT GI + Sbjct: 5 IALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAELDGEEFIIIDTGGIDGAE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE ++ ++ AD++L L Sbjct: 65 EGVETHMASQSLQAIQEADIVLFL 88 >gi|242069257|ref|XP_002449905.1| hypothetical protein SORBIDRAFT_05g025430 [Sorghum bicolor] gi|241935748|gb|EES08893.1| hypothetical protein SORBIDRAFT_05g025430 [Sorghum bicolor] Length = 684 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/93 (36%), Positives = 51/93 (54%), Gaps = 7/93 (7%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280 I I+G N GKSS+ NAL +D IV+ + GTTRD + + +G K+ DTAGIR Sbjct: 394 IAIVGRPNVGKSSILNALVGEDRTIVSPVSGTTRDAIDTEFTTADGEKYKLIDTAGIRRR 453 Query: 281 DDIV------EKEGIKRTFLEVENADLILLLKE 307 ++ E +KR F + +D++ L+ E Sbjct: 454 AAVISAGSTTESLSVKRAFRAIRRSDVVALVIE 486 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 31/59 (52%), Gaps = 7/59 (11%) Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 K +S HI L K+ I+G N GKS+LFN L + AIV D PG TRD L Sbjct: 146 KTSVSKHIPDNLLP-------KVAIIGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRL 197 >gi|16801117|ref|NP_471385.1| GTP-binding protein EngA [Listeria innocua Clip11262] gi|26006727|sp|Q92A71|DER_LISIN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|16414552|emb|CAC97281.1| lin2051 [Listeria innocua Clip11262] Length = 436 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/97 (36%), Positives = 56/97 (57%), Gaps = 5/97 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K ++G N GKSS+ NAL +D IV+DI GTTRD + +G + DTAG+R+ Sbjct: 177 KFSLIGRPNVGKSSILNALLGEDRVIVSDIAGTTRDAIDTTYTFDGQDYVMIDTAGMRKR 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEI 314 + EK + R +E +D++L++ IN+++ I Sbjct: 237 GKVYESTEKYSVLRAMRAIERSDVVLVV--INAEEGI 271 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN + + V+IV D+PG TRD + + G I DT GI +D Sbjct: 6 VAIVGRPNVGKSTIFNRIVGERVSIVEDVPGVTRDRIYNSAEWLGKEFNIIDTGGIDLSD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + ++ + + ++ AD+I+ + Sbjct: 66 EPFLEQIRAQAEIAIDEADVIIFI 89 >gi|300812163|ref|ZP_07092607.1| ribosome-associated GTPase EngA [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496848|gb|EFK31926.1| ribosome-associated GTPase EngA [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 435 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/86 (37%), Positives = 48/86 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN + + VAIV D PG TRD G+ I DT GI D Sbjct: 6 VAIVGRPNVGKSTLFNRIINERVAIVEDRPGVTRDRNYARASWMGHQFSIIDTGGITWED 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKE 307 +++E + + +E AD+I++L + Sbjct: 66 STIDEEIRAQAEIAIEEADVIVMLAD 91 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 46/179 (25%), Positives = 80/179 (44%), Gaps = 29/179 (16%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 ++G N GKSS+ N L ++ IV + GTTRD + +G ++ DTAGIR + Sbjct: 179 VIGRPNVGKSSIVNRLLGEERVIVANEEGTTRDAIDTPFVKDGTKFRVVDTAGIRRRGKV 238 Query: 284 ---VEKEGIKRTFLEVENADL-ILLLKEINSKKE-------ISFPKNIDFIFIGTKSDLY 332 EK + R +E +D+ IL+L +E + + I K DL Sbjct: 239 YEKTEKYSVMRAMSAMERSDVAILVLDASTGIREQDKHVAGYAHEAGLGMIIAVNKWDLP 298 Query: 333 -----------STYTEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLPFSI 373 + EE+ +L +S+ TG+ +++L +K + NK +++ S+ Sbjct: 299 KKDSSSGKDFEAVIREEFSYLDYAPIVFVSAKTGKNVDQLPKMVKEVYENKNQRIQSSV 357 >gi|313675797|ref|YP_004053793.1| ribosome-associated GTPase enga [Marivirga tractuosa DSM 4126] gi|312942495|gb|ADR21685.1| ribosome-associated GTPase EngA [Marivirga tractuosa DSM 4126] Length = 435 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 ++ ILG NAGKSS NAL + IVTDI GTTRD + L G ++DTAG+R Sbjct: 177 RLAILGRPNAGKSSFLNALLGDERTIVTDIAGTTRDSINTHYKLYGKDFILTDTAGLRKK 236 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305 +T D +E R ++++D+ +++ Sbjct: 237 TKTKDDIEFYSTIRAIQALQDSDVCIVM 264 Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 + I+G N GKS+ FN L ++ AI+ + G TRD + G + DT G + + Sbjct: 5 VAIVGRPNVGKSTFFNRLVERKQAIMDNESGVTRDRQYGEAQWIGKKFTVIDTGGYVTGS 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 +DI EKE K+ ++ A +IL + Sbjct: 65 NDIFEKEIRKQVKEALKEATVILFM 89 >gi|119775495|ref|YP_928235.1| GTP-binding protein EngA [Shewanella amazonensis SB2B] gi|166225853|sp|A1S859|DER_SHEAM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|119767995|gb|ABM00566.1| small GTP-binding protein domain [Shewanella amazonensis SB2B] Length = 488 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 50/89 (56%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD L GY + DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADYPGLTRDRKYGRAHLSGYEFIVVDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310 + +E + +++ +E AD++L + + + Sbjct: 65 EGIETKMAEQSLAAIEEADVVLFMTDARA 93 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 55/88 (62%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 K+ I+G N GKS+L N + ++ +V D PGTTRD + I ++ +G + DTAG+R Sbjct: 201 KLAIIGKPNVGKSTLTNRILGEERVVVYDQPGTTRDSVYIPMERDGRNYVLIDTAGVRRR 260 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305 +++EK + +T VE+++++LL+ Sbjct: 261 ARVHEVIEKFSVIKTLKAVEDSNVVLLV 288 >gi|89901081|ref|YP_523552.1| GTP-binding protein EngA [Rhodoferax ferrireducens T118] gi|122479081|sp|Q21W32|DER_RHOFD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|89345818|gb|ABD70021.1| Small GTP-binding protein domain [Rhodoferax ferrireducens T118] Length = 447 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 28/88 (31%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ + G N GKS+L N ++ + D+PGTTRD +++ + G ++ DTAG+R Sbjct: 181 KLAVAGRPNVGKSTLINTWLGEERLVAFDLPGTTRDAISVPFERNGQKFELVDTAGLRRR 240 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +EK + +T +E+++++LLL Sbjct: 241 GKVFEAIEKFSVVKTLQAIESSNVVLLL 268 Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust. Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 5/96 (5%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L K AIV D G TRD + + + DT G E D Sbjct: 5 VALVGRPNVGKSTLFNRLTKSRDAIVADFAGLTRDRHYGNAKQGKHEFIVIDTGGF-EPD 63 Query: 282 DI--VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + KE K+T V AD+++ + +++++ IS Sbjct: 64 AAGGIFKEMAKQTTQAVAEADVVIFV--VDAREGIS 97 >gi|313623121|gb|EFR93388.1| ribosome-associated GTPase EngA [Listeria innocua FSL J1-023] Length = 436 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/97 (36%), Positives = 56/97 (57%), Gaps = 5/97 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K ++G N GKSS+ NAL +D IV+DI GTTRD + +G + DTAG+R+ Sbjct: 177 KFSLIGRPNVGKSSILNALLGEDRVIVSDIAGTTRDAIDTTYTFDGQDYVMIDTAGMRKR 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEI 314 + EK + R +E +D++L++ IN+++ I Sbjct: 237 GKVYESTEKYSVLRAMRAIERSDVVLVV--INAEEGI 271 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN + + V+IV D+PG TRD + + G I DT GI +D Sbjct: 6 VAIVGRPNVGKSTIFNRIVGERVSIVEDVPGVTRDRIYNSAEWLGKEFNIIDTGGIDLSD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + ++ + + ++ AD+I+ + Sbjct: 66 EPFLEQIRAQAEIAIDEADVIIFI 89 >gi|309805732|ref|ZP_07699772.1| ribosome biogenesis GTPase Der [Lactobacillus iners LactinV 09V1-c] gi|309807723|ref|ZP_07701658.1| ribosome biogenesis GTPase Der [Lactobacillus iners LactinV 01V1-a] gi|312875513|ref|ZP_07735516.1| ribosome biogenesis GTPase Der [Lactobacillus iners LEAF 2053A-b] gi|315653509|ref|ZP_07906430.1| ribosome-associated GTPase EngA [Lactobacillus iners ATCC 55195] gi|308164985|gb|EFO67228.1| ribosome biogenesis GTPase Der [Lactobacillus iners LactinV 09V1-c] gi|308169034|gb|EFO71117.1| ribosome biogenesis GTPase Der [Lactobacillus iners LactinV 01V1-a] gi|311089024|gb|EFQ47465.1| ribosome biogenesis GTPase Der [Lactobacillus iners LEAF 2053A-b] gi|315489200|gb|EFU78841.1| ribosome-associated GTPase EngA [Lactobacillus iners ATCC 55195] Length = 435 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/185 (25%), Positives = 90/185 (48%), Gaps = 29/185 (15%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 N + I+G N GKSS+ N++ ++ IV D+ GTTRD + + +G I DTAGI Sbjct: 173 NNIRFSIIGRPNVGKSSIVNSILGENRVIVADMEGTTRDAIDTIFEKDGQKYTIVDTAGI 232 Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLLKE-----INSKKEI---SFPKNIDFIFIG 326 R + VEK + R+ +E +D+ +++ + I K I + I Sbjct: 233 RRKGKVYEKVEKYSVMRSISAIEQSDVAIIVIDASVGIIEQDKHIAGYAHDAGKGVIIAV 292 Query: 327 TKSDLYSTYT-----------EEYDHL-------ISSFTGEGLEELINKIKSILSNKFKK 368 K D+ S T +E+ +L +S+ TG+ +E++++ +K++ N+ ++ Sbjct: 293 NKWDVPSKTTTSMQDFVKVIRQEFQYLDYAPIVFVSAKTGQRIEDIVSLVKNVKENQQRR 352 Query: 369 LPFSI 373 + S+ Sbjct: 353 IQSSV 357 Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 50/87 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS++FN + VAIV D PG TRD + + G + DT GI D Sbjct: 6 VALVGRPNVGKSTIFNRIINSRVAIVEDQPGVTRDRIYANAQWMGKQFVLVDTGGITFED 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI 308 +++E++ + + + AD+I++L ++ Sbjct: 66 NVIEEQIKTQAEIAINEADVIVMLSDV 92 >gi|205355964|ref|ZP_03222732.1| putative GTP binding protein [Campylobacter jejuni subsp. jejuni CG8421] gi|205346088|gb|EDZ32723.1| putative GTP binding protein [Campylobacter jejuni subsp. jejuni CG8421] Length = 460 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 55/85 (64%), Gaps = 3/85 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I+++G N GKSSLFN +A++ +AI +DI GTTRD ++ + + D+ G+ E+D Sbjct: 4 IILIGKPNVGKSSLFNRMARQRIAITSDISGTTRDTNKTEIHINSKKAMLIDSGGLDESD 63 Query: 282 DIVEKEGIKRTFLEV-ENADLILLL 305 ++ + +K+ L+V + +D+IL L Sbjct: 64 ELF--KNVKKNTLKVAKESDIILYL 86 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 44/144 (30%), Positives = 75/144 (52%), Gaps = 27/144 (18%) Query: 154 LSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGK-- 211 L LY +W++K H F+ +D EEE++++F + +GK Sbjct: 149 LDELY-EWLEKFLH-EEFLISD----EEENLEDFLE----------------YYEEGKEF 186 Query: 212 -LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270 E+ +N ++ I+G N GKSSL NAL K++ ++V+ I GTT D + + + +++ Sbjct: 187 QFKEVDQNHIRVGIVGRVNVGKSSLLNALVKQERSVVSSIAGTTIDPVNESVVHKDKVIE 246 Query: 271 ISDTAGIRETDDI--VEKEGIKRT 292 DTAGIR+ I +E+ + RT Sbjct: 247 FVDTAGIRKRGKIQGLERFALNRT 270 >gi|313123537|ref|YP_004033796.1| GTP-binding protein enga [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280100|gb|ADQ60819.1| GTP-binding protein engA [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|325684298|gb|EGD26471.1| ribosome-associated GTPase EngA [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 435 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/86 (37%), Positives = 48/86 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN + + VAIV D PG TRD G+ I DT GI D Sbjct: 6 VAIVGRPNVGKSTLFNRIINERVAIVEDRPGVTRDRNYARASWMGHQFSIIDTGGITWED 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKE 307 +++E + + +E AD+I++L + Sbjct: 66 STIDEEIRAQAEIAIEEADVIVMLAD 91 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 46/179 (25%), Positives = 80/179 (44%), Gaps = 29/179 (16%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 ++G N GKSS+ N L ++ IV + GTTRD + +G ++ DTAGIR + Sbjct: 179 VIGRPNVGKSSIVNRLLGEERVIVANEEGTTRDAIDTPFVKDGTKFRVVDTAGIRRRGKV 238 Query: 284 ---VEKEGIKRTFLEVENADL-ILLLKEINSKKE-------ISFPKNIDFIFIGTKSDLY 332 EK + R +E +D+ IL+L +E + + I K DL Sbjct: 239 YEKTEKYSVMRAMSAMERSDVAILVLDASTGIREQDKHVAGYAHEAGLGMIIAVNKWDLP 298 Query: 333 -----------STYTEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLPFSI 373 + EE+ +L +S+ TG+ +++L +K + NK +++ S+ Sbjct: 299 KKDSSSGKDFEAVIREEFSYLDYAPIVFVSAKTGKNIDQLPKMVKEVYENKNQRIQSSV 357 >gi|296133088|ref|YP_003640335.1| ribosome-associated GTPase EngA [Thermincola sp. JR] gi|296031666|gb|ADG82434.1| ribosome-associated GTPase EngA [Thermincola potens JR] Length = 440 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/110 (30%), Positives = 62/110 (56%), Gaps = 3/110 (2%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L +++ H+ + E + KI ++G N GKSS+ NAL ++ IV+D+ GTTRD + Sbjct: 157 LLDEVVKHLPEYAAEEYGDDVIKIAVIGRPNVGKSSIVNALLGEERVIVSDVAGTTRDAI 216 Query: 259 TIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLL 305 + G + DTAG+R+ D+ E+ + R+ V+ +D++L++ Sbjct: 217 DTYFERGGQRYLLIDTAGMRKKGKIDEPTERYSVLRSLKAVDRSDVVLMI 266 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 37/94 (39%), Positives = 51/94 (54%), Gaps = 8/94 (8%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID---LDLEGYLVKISDTAGIR 278 + I+G N GKS+LFN +A +AIV D PG TRD + D LD E LV DT GI Sbjct: 6 VAIVGRPNVGKSTLFNRIAGSRIAIVEDKPGVTRDRIYKDAVWLDKEFTLV---DTGGIE 62 Query: 279 ETDDIVEKEG--IKRTFLEVENADLILLLKEINS 310 DD +++ L +E A++IL + + S Sbjct: 63 FRDDKGSMSDLILQQARLAIEEAEVILFVVDARS 96 >gi|325981901|ref|YP_004294303.1| ribosome-associated GTPase EngA [Nitrosomonas sp. AL212] gi|325531420|gb|ADZ26141.1| ribosome-associated GTPase EngA [Nitrosomonas sp. AL212] Length = 464 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/98 (34%), Positives = 58/98 (59%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 KI I+G N GKS+L N L ++ I D PGTTRD + +D + + DTAG+R Sbjct: 176 KIAIVGRPNVGKSTLINTLLGEERVIAFDQPGTTRDSIYVDFTHKDKQYTLIDTAGLRRR 235 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + + +EK +T +E+A++++L+ ++++ EIS Sbjct: 236 GQVHETIEKFSAIKTLQAIEDANVVVLI--LDARNEIS 271 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 35/91 (38%), Positives = 49/91 (53%), Gaps = 13/91 (14%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD--VLTIDLDLEGYLVKISDTAGIRE 279 +V++G N GKS+LFN L + AIV DIPG TRD + + YLV DT G Sbjct: 5 LVLVGRPNVGKSTLFNRLTRTRDAIVADIPGLTRDRHYGAGRVGDKPYLV--VDTGGF-- 60 Query: 280 TDDIVEKEGI-----KRTFLEVENADLILLL 305 + V KEG+ K+T ++ AD +L + Sbjct: 61 --EPVIKEGVLYAMAKQTIQAIDEADKVLFI 89 >gi|114319757|ref|YP_741440.1| GTP-binding protein EngA [Alkalilimnicola ehrlichii MLHE-1] gi|122312352|sp|Q0AB37|DER_ALHEH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|114226151|gb|ABI55950.1| small GTP-binding protein [Alkalilimnicola ehrlichii MLHE-1] Length = 467 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/98 (34%), Positives = 60/98 (61%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 +I I+G N GKS+L N L ++ +V D+PGTTRD + I L+ +G + DTAG+R Sbjct: 183 RIAIVGRPNVGKSTLVNRLLGEERVLVYDMPGTTRDSVFIPLERDGRPYTLIDTAGMRRR 242 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + VEK + +T +E A +++L+ I++++ ++ Sbjct: 243 ARVHETVEKFSVIQTLKAMEAAHVVILV--IDAREGVT 278 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 43/84 (51%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L + A+V D PG TRD + + DT G+ + Sbjct: 5 IALVGRPNVGKSTLFNQLTRSRDALVADHPGLTRDRQYGVGKVGERPYIVVDTGGLGDDP 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE+ ++ +E AD IL L Sbjct: 65 EGVEQGMHQQALAAIEEADAILFL 88 >gi|99905857|gb|ABF68623.1| YphC [Helicobacter pylori] Length = 170 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/102 (38%), Positives = 59/102 (57%), Gaps = 4/102 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI ++ GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSNFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI 320 ++ KE + +DLIL + K I S ++I + I Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREI 110 >gi|325265091|ref|ZP_08131818.1| ribosome-associated GTPase EngA [Clostridium sp. D5] gi|324029781|gb|EGB91069.1| ribosome-associated GTPase EngA [Clostridium sp. D5] Length = 442 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 68/121 (56%), Gaps = 6/121 (4%) Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247 +S+ L D+L +++++H + E + +I I+G N GKSS+ N L ++ IV Sbjct: 149 ASRLGLGDML---DEVTAHFPKSAGEEEEDDRPRIAIVGKPNVGKSSIINKLLGENRVIV 205 Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILL 304 +D+ GTTRD + ++ +G DTAG+R I +E+ I RT VE AD++L+ Sbjct: 206 SDVAGTTRDAIDTEILHDGKEYIFIDTAGLRRKSRIKEELERYSIIRTVTAVERADVVLI 265 Query: 305 L 305 + Sbjct: 266 V 266 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 53/88 (60%), Gaps = 1/88 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFNALA + ++IV D PG TRD + D+ + DT GI ++ Sbjct: 6 VAIVGRPNVGKSTLFNALAGEMISIVKDTPGVTRDRIYADVSWLDREFTMIDTGGIEPDS 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308 D++ + ++ + ++ AD+I+ + ++ Sbjct: 66 RDVILSQMREQAQIAIDTADVIIFITDV 93 >gi|292806496|gb|ADE42378.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/82 (41%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + ++LIL Sbjct: 69 ALLSKEIKALNLKAAQMSNLIL 90 >gi|302191345|ref|ZP_07267599.1| GTP-binding protein EngA [Lactobacillus iners AB-1] gi|309804160|ref|ZP_07698238.1| ribosome biogenesis GTPase Der [Lactobacillus iners LactinV 11V1-d] gi|312872309|ref|ZP_07732379.1| ribosome biogenesis GTPase Der [Lactobacillus iners LEAF 2062A-h1] gi|312873983|ref|ZP_07734019.1| ribosome biogenesis GTPase Der [Lactobacillus iners LEAF 2052A-d] gi|325912827|ref|ZP_08175205.1| ribosome biogenesis GTPase Der [Lactobacillus iners UPII 60-B] gi|329921288|ref|ZP_08277726.1| ribosome biogenesis GTPase Der [Lactobacillus iners SPIN 1401G] gi|308163743|gb|EFO66012.1| ribosome biogenesis GTPase Der [Lactobacillus iners LactinV 11V1-d] gi|311090532|gb|EFQ48940.1| ribosome biogenesis GTPase Der [Lactobacillus iners LEAF 2052A-d] gi|311092132|gb|EFQ50506.1| ribosome biogenesis GTPase Der [Lactobacillus iners LEAF 2062A-h1] gi|325477820|gb|EGC80954.1| ribosome biogenesis GTPase Der [Lactobacillus iners UPII 60-B] gi|328934580|gb|EGG31084.1| ribosome biogenesis GTPase Der [Lactobacillus iners SPIN 1401G] Length = 435 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/185 (25%), Positives = 90/185 (48%), Gaps = 29/185 (15%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 N + I+G N GKSS+ N++ ++ IV D+ GTTRD + + +G I DTAGI Sbjct: 173 NNIRFSIIGRPNVGKSSIVNSILGENRVIVADMEGTTRDAIDTIFEKDGQKYTIVDTAGI 232 Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLLKE-----INSKKEI---SFPKNIDFIFIG 326 R + VEK + R+ +E +D+ +++ + I K I + I Sbjct: 233 RRKGKVYEKVEKYSVMRSISAIEQSDVAIIVIDASVGIIEQDKHIAGYAHDAGKGVIIAV 292 Query: 327 TKSDLYSTYT-----------EEYDHL-------ISSFTGEGLEELINKIKSILSNKFKK 368 K D+ S T +E+ +L +S+ TG+ +E++++ +K++ N+ ++ Sbjct: 293 NKWDVPSKTTTSMQDFVKVIRQEFQYLDYAPIVFVSAKTGQRIEDIVSLVKNVKENQQRR 352 Query: 369 LPFSI 373 + S+ Sbjct: 353 IQSSV 357 Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 50/87 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS++FN + VAIV D PG TRD + + G + DT GI D Sbjct: 6 VALVGRPNVGKSTIFNRIINSRVAIVEDQPGVTRDRIYANAQWMGKQFVLVDTGGITFED 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI 308 +++E++ + + + AD+I++L ++ Sbjct: 66 NVIEEQIKTQAEIAINEADVIVMLSDV 92 >gi|229824833|ref|ZP_04450902.1| hypothetical protein GCWU000182_00182 [Abiotrophia defectiva ATCC 49176] gi|229790836|gb|EEP26950.1| hypothetical protein GCWU000182_00182 [Abiotrophia defectiva ATCC 49176] Length = 445 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/88 (40%), Positives = 50/88 (56%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI I+G N GKSS+ N L ++ IV+D+ GTTRD + + G + DTAGIR Sbjct: 178 KIAIIGKPNVGKSSIINRLLGENRVIVSDVAGTTRDAIDTRIRRNGKDYIMIDTAGIRRK 237 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 I +E I RT VE AD+++L+ Sbjct: 238 SRIKEDIEYYSIVRTVSAVERADIVVLV 265 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 52/90 (57%), Gaps = 1/90 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFN LA D++IV D PG TRD + D + + DT GI +T Sbjct: 5 VAIVGRPNVGKSTLFNKLAGSDISIVKDTPGVTRDRIYADAEWLNKAFTMIDTGGIEPDT 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310 D++ ++ + ++ AD+I+ + ++ + Sbjct: 65 SDMMLANMREQAEIAIDTADVIIFITDVKT 94 >gi|325285620|ref|YP_004261410.1| GTP-binding protein engA [Cellulophaga lytica DSM 7489] gi|324321074|gb|ADY28539.1| GTP-binding protein engA [Cellulophaga lytica DSM 7489] Length = 434 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G NAGKSS NAL ++ IVTD+ GTTRD + + G+ + DTAGIR Sbjct: 175 RFAVVGRPNAGKSSFINALIGEERYIVTDVAGTTRDSIDTKYNRFGFEFNLVDTAGIRRK 234 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E + R+ +E+AD+ +L+ Sbjct: 235 AKVKEDLEFYSVMRSVRAIEHADVCILM 262 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 1/90 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 + I+G N GKS+ FN L ++ AIV + G TRD D G + DT G + + Sbjct: 5 VAIVGRPNVGKSTFFNRLIQRREAIVDAVSGVTRDRHYGKSDWNGVEFSLIDTGGYVLGS 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310 +D+ E E K+ L ++ AD I+ + ++ S Sbjct: 65 EDVFEAEIDKQVELAIDEADAIVFMVDVES 94 >gi|311113301|ref|YP_003984523.1| ribosome-associated GTPase EngA [Rothia dentocariosa ATCC 17931] gi|310944795|gb|ADP41089.1| ribosome-associated GTPase EngA [Rothia dentocariosa ATCC 17931] Length = 529 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/58 (48%), Positives = 38/58 (65%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 ++ ++G N GKSSL N LA + A+V D+ GTTRD + +DL GY + DTAGIR Sbjct: 252 RVALIGRPNVGKSSLLNKLAGSERAVVNDLAGTTRDPIDEVIDLGGYPWRFIDTAGIR 309 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/84 (28%), Positives = 44/84 (52%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++ N + + A+V D PG TRD ++ + G + DT G Sbjct: 78 VAIVGRPNVGKSTIINRILGRREAVVEDKPGVTRDRVSYKAEWVGKRFTLVDTGGWESDA 137 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + + + VE AD+++L+ Sbjct: 138 RGIDAQVADQAEIAVEQADVVILV 161 >gi|282855425|ref|ZP_06264746.1| ribosome-associated GTPase EngA [Pyramidobacter piscolens W5455] gi|282586721|gb|EFB91968.1| ribosome-associated GTPase EngA [Pyramidobacter piscolens W5455] Length = 443 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 3/90 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--- 278 + ++G N GKSS+ NAL ++V+DIPGTTRD + L+ +G +I DTAG+R Sbjct: 178 VALVGRPNVGKSSILNALTGSQRSLVSDIPGTTRDSIDAVLEYKGERFRIVDTAGLRRKS 237 Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEI 308 D +E RT V+ D+ + + ++ Sbjct: 238 RVKDDIEFYSTVRTMDAVDQCDVAIFVMDV 267 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 43/165 (26%), Positives = 80/165 (48%), Gaps = 24/165 (14%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKSSLFN + + AIV D+PG TRD L + + + DT G+ D Sbjct: 4 VSIVGRPNVGKSSLFNRIIGERRAIVDDMPGVTRDRLYGCVQWKDKSFYVVDTGGLLLKD 63 Query: 282 DIVEKEGIK-RTFLEVENADLIL------------------LLKEINSKKEISFPKNIDF 322 EG+K + F +E +D+++ +L+ +S ++ K DF Sbjct: 64 KDPIMEGMKDQIFQAIEESDVVIFMVDGSRGVTWMDEDVAQVLRSHSSMVILAVNKIDDF 123 Query: 323 IFIGTKSDLYSTYTEEYDHL--ISSFTGEGLEELINKIKSILSNK 365 + D+ Y+ ++ + +S+ G++EL++++ +L +K Sbjct: 124 ---SHEDDVAEAYSLGFEKVVGVSALHDRGIDELLDQVVQMLGDK 165 >gi|258515338|ref|YP_003191560.1| GTP-binding protein EngA [Desulfotomaculum acetoxidans DSM 771] gi|257779043|gb|ACV62937.1| small GTP-binding protein [Desulfotomaculum acetoxidans DSM 771] Length = 443 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/145 (31%), Positives = 74/145 (51%), Gaps = 15/145 (10%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI ++G N GKSSL N++ ++ IV+++PGTTRD + + + + DTAGIR Sbjct: 180 KIAVIGRPNVGKSSLVNSILGQERVIVSNVPGTTRDAIDTPFERDDKHYVLIDTAGIRRK 239 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKE-----INSKKEI---SFPKNIDFIFIGTKS 329 I EK + R+ ++ +D+ L++ + + K I + K I I K Sbjct: 240 SRIYISTEKYSVLRSLKAIDRSDVALIVLDAEEGVTDQDKRIAGYAHEKGKASIIIINKW 299 Query: 330 DLYSTYTEEYDHLISSFTGEGLEEL 354 DL E+ DH +S FT + EE+ Sbjct: 300 DL----IEKDDHTMSIFTRKIREEM 320 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 35/91 (38%), Positives = 49/91 (53%), Gaps = 3/91 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI--RE 279 + I+G N GKS+LFN + VAIV PG TRD L + + G + DT GI +E Sbjct: 6 VAIVGRPNVGKSTLFNRIVGARVAIVEGQPGITRDRLYQEAEWSGRSFMLVDTGGIDFQE 65 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINS 310 D+IV + L +E ADL+L + + S Sbjct: 66 NDEIVSNVR-HQARLAIEEADLVLFVVDARS 95 >gi|227537540|ref|ZP_03967589.1| GTP-binding protein EngA [Sphingobacterium spiritivorum ATCC 33300] gi|227242677|gb|EEI92692.1| GTP-binding protein EngA [Sphingobacterium spiritivorum ATCC 33300] Length = 441 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K I+G N GKSSL NAL K+ IVT + GTTRD + I + G+ + DTAG+R Sbjct: 183 KYTIVGRPNVGKSSLTNALLGKERNIVTPVAGTTRDSIRIHYNQFGHEFLLIDTAGMRRK 242 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E + RT +E++D+++L+ Sbjct: 243 SKVNEDIEFYSVMRTIKALEDSDVVILM 270 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 1/90 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 + I+G N GKS+LFN L + AIV D G TRD + G + DT G + + Sbjct: 13 VAIVGRPNVGKSTLFNRLTESRKAIVDDFSGVTRDRHYESAEWIGKKFTVIDTGGFVHGS 72 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310 DD+ E+ + ++ +E A +I+ + ++ + Sbjct: 73 DDVFEEAIRDQVYIAIEEASVIIFMVDVTT 102 >gi|254417083|ref|ZP_05030829.1| GTPase, putative [Microcoleus chthonoplastes PCC 7420] gi|196176061|gb|EDX71079.1| GTPase, putative [Microcoleus chthonoplastes PCC 7420] Length = 461 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/95 (36%), Positives = 52/95 (54%), Gaps = 11/95 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI--------DLDLEGYLVKISD 273 + I+G N GKSSL NAL + AIV+ + GTTRD + + + + E L ++ D Sbjct: 179 VAIVGRPNVGKSSLLNALTGEKRAIVSSVSGTTRDAIDMIVERPGNPETETESQLYRLID 238 Query: 274 TAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305 TAGIR ++ E GI R F + AD++L + Sbjct: 239 TAGIRRKKNVEYGPEFFGINRAFKAIRRADVVLFV 273 Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 30/61 (49%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+L N LA AIV D PG TRD + I DT G+ D Sbjct: 6 VAVIGRPNVGKSTLVNRLAGVMDAIVHDQPGVTRDRTYRPAFWQDRDYSIVDTGGLVFDD 65 Query: 282 D 282 D Sbjct: 66 D 66 >gi|169831333|ref|YP_001717315.1| small GTP-binding protein [Candidatus Desulforudis audaxviator MP104C] gi|238688334|sp|B1I462|DER_DESAP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|169638177|gb|ACA59683.1| small GTP-binding protein [Candidatus Desulforudis audaxviator MP104C] Length = 438 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/182 (26%), Positives = 85/182 (46%), Gaps = 29/182 (15%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I ++G N GKSSL NA+ ++ IV+D+PGTTRD + +G DTAG+R Sbjct: 177 RIAVVGRPNVGKSSLVNAILGEERVIVSDVPGTTRDAVDTLFRRDGREYVFIDTAGMRRK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEI-----NSKKEISF---PKNIDFIFIGTKS 329 I +E + R +E +DL L++ + N + I+ I + K Sbjct: 237 ARIRESIEYYSVLRAKKALERSDLALVVLDFTDGVTNQDQRIAGLAEEAGKGTIIVVNKW 296 Query: 330 DL-------YSTYTEEYDH-----------LISSFTGEGLEELINKIKSILSNKFKKLPF 371 DL S Y EE +S+ +G G+ ++++ ++S++ +++P Sbjct: 297 DLAEGSGVSASRYQEEVRRELIFIGYAPVLCVSAVSGLGVPKILDTVESVMGEYRRQIPT 356 Query: 372 SI 373 S+ Sbjct: 357 SM 358 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 7/93 (7%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI--RE 279 + I+G N GKS+LFN + + A+V PG TRD L ++D G + DT GI + Sbjct: 6 VAIVGRPNVGKSTLFNRILGRQAAVVDAEPGVTRDRLYQEVDWAGRHFILVDTGGIESQA 65 Query: 280 TDDIVEK--EGIKRTFLEVENADLILLLKEINS 310 +D+ + + ++R E A LIL + + N+ Sbjct: 66 GEDMANRVFDQVRRAMAE---AQLILYVLDGNA 95 >gi|171913936|ref|ZP_02929406.1| GTP-binding protein [Verrucomicrobium spinosum DSM 4136] Length = 502 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/91 (41%), Positives = 48/91 (52%), Gaps = 1/91 (1%) Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 I+N + I+G N GKS+LFN LA K++AIV D PG TRD L I DT Sbjct: 3 IQNPKMVAIVGRPNVGKSALFNRLAGKNIAIVHDRPGVTRDRLVATCRRGVVPFDIMDTG 62 Query: 276 GIRET-DDIVEKEGIKRTFLEVENADLILLL 305 GI T +D + L +E ADLIL + Sbjct: 63 GIGATIEDEFAAQVQAEANLAMEEADLILFV 93 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 49/88 (55%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 +I I+G NAGKSSL NA+ + IV++I GTTRD + I + G + DTAG+R Sbjct: 220 RIAIVGKPNAGKSSLVNAILGEQRTIVSEIAGTTRDAIDIPCTVAGKNYTLVDTAGLRRK 279 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305 + D VE + + ADL LL+ Sbjct: 280 AKIQDAVESFSAMQATKTIRRADLCLLM 307 >gi|87306807|ref|ZP_01088953.1| probable GTP-binding protein [Blastopirellula marina DSM 3645] gi|87290180|gb|EAQ82068.1| probable GTP-binding protein [Blastopirellula marina DSM 3645] Length = 473 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/87 (40%), Positives = 54/87 (62%), Gaps = 3/87 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI--R 278 +IVI+G N GKSSLFN LA + +AIV ++ G TRD +T + +I DT GI Sbjct: 5 QIVIVGRPNVGKSSLFNWLAGRRLAIVDNVAGVTRDRMTYLMQWRERYFEIVDTGGIGVN 64 Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL 305 + DD+ + E ++ + +++ADLIL + Sbjct: 65 DVDDLTD-EIEQQIAIAIDSADLILFV 90 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 53/98 (54%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI ++G N GKS+ N LA+ + IV+++ GTTRD + I +L+G DT G+R Sbjct: 179 KIAVVGRRNVGKSTFVNTLARAERMIVSEVAGTTRDSVDIRFELDGKSFTAIDTPGLRRR 238 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + V+ R + AD++L+ ++ ++IS Sbjct: 239 VSVKTDVDFYSTHRAERSIRRADVVLMF--FDASQQIS 274 >gi|323706096|ref|ZP_08117665.1| ribosome-associated GTPase EngA [Thermoanaerobacterium xylanolyticum LX-11] gi|323534540|gb|EGB24322.1| ribosome-associated GTPase EngA [Thermoanaerobacterium xylanolyticum LX-11] Length = 439 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI +G N GKSSL N + ++ AIV+DIPGTTRD L + + I DTAG+R+ Sbjct: 178 KISFIGKPNVGKSSLVNKILGEERAIVSDIPGTTRDALDTYFEKDDRKYVIIDTAGMRKK 237 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLL 305 +D +E+ + R ++ +D+ +L+ Sbjct: 238 GRIEDKIERYSVLRALAAIDRSDICILV 265 Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust. Identities = 36/102 (35%), Positives = 55/102 (53%), Gaps = 10/102 (9%) Query: 219 GYKIV-ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 Y +V I+G N GKS+LFN + + ++IV D PG TRD + + + + DT G+ Sbjct: 2 AYPMVGIVGRPNVGKSTLFNKITGQRISIVEDQPGVTRDRIYFETEWMDKRFILVDTGGL 61 Query: 278 RETDDIVEKEGIKRTFLEVENA----DLILLLKEINSKKEIS 315 E D E E + ++VE A DLIL + I+ K+ +S Sbjct: 62 -EPDS--EDEFFSKIKMQVEAALKTVDLILFV--IDGKEGVS 98 >gi|83319844|ref|YP_424546.1| GTP-binding protein EngA [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|123535633|sp|Q2SRR7|DER_MYCCT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|83283730|gb|ABC01662.1| GTP-binding protein engA [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 435 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/120 (35%), Positives = 68/120 (56%), Gaps = 6/120 (5%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L + + S+IS+ + E+ + KI I+G N GKSSL N+L ++ IV++I GTT D + Sbjct: 155 LLDKVISYISKNDV-ELKDDSTKIAIIGKPNVGKSSLVNSLVNENRMIVSEIEGTTLDAV 213 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 I + DTAGIR+ + VEK R+ + N+D++LL+ I++ K I+ Sbjct: 214 DISFSYNKKKYIVIDTAGIRKKSKLGQTVEKYSYLRSLSAIANSDIVLLM--IDATKPIT 271 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 45/84 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKSSLFN + K+ +IV + PG TRD + + + + DT GI Sbjct: 6 VAIVGKPNVGKSSLFNRIIKEKKSIVDNKPGVTRDRIYSNAEWLTREFILIDTGGISVDQ 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + E +T + +E AD+I+ + Sbjct: 66 QLFSNEIQIQTQIAIEQADVIIFV 89 >gi|330830064|ref|YP_004393016.1| GTP-binding protein engA [Aeromonas veronii B565] gi|328805200|gb|AEB50399.1| GTP-binding protein engA [Aeromonas veronii B565] Length = 498 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 60/98 (61%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 K I+G N GKS+L N + +D IV D+PGTTRD + I ++ + + DTAG+R Sbjct: 214 KFAIVGRPNVGKSTLTNRMLGEDRVIVYDMPGTTRDSVYIPMERDEQKYVVIDTAGVRRR 273 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + + VEK + +T +E+A++ LL+ I++++ I+ Sbjct: 274 GKVHETVEKFSVIKTLKAIEDANVCLLV--IDAQETIT 309 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD L + DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGELEFIVVDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + +E + +++ L +E AD++L + Sbjct: 65 EGIELKMAEQSLLAIEEADVVLFM 88 >gi|122702577|emb|CAL88478.1| GTPase [Helicobacter pylori] Length = 170 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/82 (41%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI ++ GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSNFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702355|emb|CAL88368.1| GTPase [Helicobacter pylori] Length = 170 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/84 (40%), Positives = 51/84 (60%), Gaps = 1/84 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI ++ GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSNFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ KE + +DLIL + Sbjct: 69 ALLSKEIKAFNLKAAQMSDLILYV 92 >gi|189345964|ref|YP_001942493.1| GTP-binding protein EngA [Chlorobium limicola DSM 245] gi|238692187|sp|B3EFY1|DER_CHLL2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|189340111|gb|ACD89514.1| small GTP-binding protein [Chlorobium limicola DSM 245] Length = 437 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 49/89 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN + ++ AIV PG TRD + + +G + DT G + Sbjct: 5 IALVGRPNVGKSTLFNRILRQKSAIVDSTPGVTRDRHIMPGEWQGKQFLLMDTGGYCAAN 64 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310 D++ I++T + +AD ++ L ++ S Sbjct: 65 DVISSSMIEQTLTAIRDADCVIFLTDVRS 93 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/63 (41%), Positives = 36/63 (57%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ ++G N GKSS NAL + IV+DIPGTTRD + + + DTAG+R+ Sbjct: 179 KLAVVGRPNVGKSSFVNALLGTNRHIVSDIPGTTRDAIDSRFIRKQQEYVLIDTAGLRKR 238 Query: 281 DDI 283 I Sbjct: 239 TKI 241 >gi|225389099|ref|ZP_03758823.1| hypothetical protein CLOSTASPAR_02845 [Clostridium asparagiforme DSM 15981] gi|225044833|gb|EEG55079.1| hypothetical protein CLOSTASPAR_02845 [Clostridium asparagiforme DSM 15981] Length = 441 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 59/98 (60%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I ++G N GKSS+ N L ++ IV+DI GTTRD + ++ +G DTAG+R Sbjct: 179 RIAVVGKPNVGKSSIINKLLGENRVIVSDIAGTTRDAVDTEIVHDGTPYVFIDTAGLRRK 238 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 I +E+ I RT VE AD+++++ I++K+ ++ Sbjct: 239 SKIHEELERYSIIRTVTAVERADIVVVV--IDAKEGVT 274 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 50/88 (56%), Gaps = 1/88 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFN LA + ++IV D PG TRD + D + DT GI +T Sbjct: 6 VAIVGRPNVGKSTLFNVLAGETISIVKDTPGVTRDRIYADCSWLNMNFTLIDTGGIEPDT 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308 D++ + ++ + + AD+I+ + ++ Sbjct: 66 SDVILSQMREQAEIAIATADVIVFIVDV 93 >gi|309807087|ref|ZP_07701066.1| ribosome biogenesis GTPase Der [Lactobacillus iners LactinV 03V1-b] gi|308166517|gb|EFO68717.1| ribosome biogenesis GTPase Der [Lactobacillus iners LactinV 03V1-b] Length = 431 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/185 (25%), Positives = 90/185 (48%), Gaps = 29/185 (15%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 N + I+G N GKSS+ N++ ++ IV D+ GTTRD + + +G I DTAGI Sbjct: 173 NNIRFSIIGRPNVGKSSIVNSILGENRVIVADMEGTTRDAIDTIFEKDGQKYTIVDTAGI 232 Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLLKE-----INSKKEI---SFPKNIDFIFIG 326 R + VEK + R+ +E +D+ +++ + I K I + I Sbjct: 233 RRKGKVYEKVEKYSVMRSISAIEQSDVAIIVIDASVGIIEQDKHIAGYAHDAGKGVIIAV 292 Query: 327 TKSDLYSTYT-----------EEYDHL-------ISSFTGEGLEELINKIKSILSNKFKK 368 K D+ S T +E+ +L +S+ TG+ +E++++ +K++ N+ ++ Sbjct: 293 NKWDVPSKTTTSMQDFVKVIRQEFQYLDYAPIVFVSAKTGQRIEDIVSLVKNVKENQQRR 352 Query: 369 LPFSI 373 + S+ Sbjct: 353 IQSSV 357 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 50/87 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS++FN + VAIV D PG TRD + + G + DT GI D Sbjct: 6 VALVGRPNVGKSTIFNRIINSRVAIVEDQPGVTRDRIYANAQWMGKQFVLVDTGGITFED 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI 308 +++E++ + + + AD+I+LL ++ Sbjct: 66 NVIEEQIKTQAEIAINEADVIVLLSDV 92 >gi|299144092|ref|ZP_07037172.1| ribosome-associated GTPase EngA [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518577|gb|EFI42316.1| ribosome-associated GTPase EngA [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 439 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ +G N GKSSL N + ++ IVTDIPGTTRD + + G DTAG+R+ Sbjct: 177 RVTFIGKPNVGKSSLINRILGEERVIVTDIPGTTRDAIDSKFNFNGENYVFVDTAGLRKK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 I +E+ + RT +E A + +L+ Sbjct: 237 KKIYENIERYSVIRTLTAIERASVCVLV 264 Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 1/87 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN + K ++I D PG TRD + D + DT G+ D Sbjct: 6 VSIIGTPNVGKSTLFNKIVGKKISITEDTPGVTRDRIYSDATWLNKQFLLVDTGGLDLKD 65 Query: 282 DIVEKEGIK-RTFLEVENADLILLLKE 307 + + IK + L ++ +D+I+ L + Sbjct: 66 EDIFMSSIKAQVDLALDMSDVIIFLTD 92 >gi|295091914|emb|CBK78021.1| ribosome-associated GTPase EngA [Clostridium cf. saccharolyticum K10] Length = 444 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 51/154 (33%), Positives = 77/154 (50%), Gaps = 23/154 (14%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I I+G N GKSS+ N L ++ IV++I GTTRD + ++ G DTAG+R Sbjct: 181 RIAIVGKPNVGKSSIVNKLLGENRVIVSNIAGTTRDAVDTEIVHNGTEYVFIDTAGLRRK 240 Query: 281 DDI---VEKEGIKRTFLEVENADLILL-------LKEINSK-KEISFPKNIDFIFIGTKS 329 + I +E+ I RT VE AD++L+ + E ++K I+ + I + K Sbjct: 241 NKIKEELERYSIIRTVTAVERADVVLVVIDATEGVTEQDAKIAGIAHDRGKGIIIVVNKW 300 Query: 330 DLYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363 D E+ D I +T NKIK+ILS Sbjct: 301 DA----IEKNDKTIYEYT--------NKIKTILS 322 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/88 (31%), Positives = 50/88 (56%), Gaps = 1/88 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + ++G N GKS+LFN LA + ++IV D PG TRD + D + DT GI ++ Sbjct: 8 VAVVGRPNVGKSTLFNVLAGEMISIVKDTPGVTRDRIYADCTWLDKAFTLIDTGGIEPDS 67 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308 DI+ + ++ + + AD+I+ + ++ Sbjct: 68 RDIILAQMREQAEIAIATADVIIFIVDV 95 >gi|294055426|ref|YP_003549084.1| ribosome-associated GTPase EngA [Coraliomargarita akajimensis DSM 45221] gi|293614759|gb|ADE54914.1| ribosome-associated GTPase EngA [Coraliomargarita akajimensis DSM 45221] Length = 514 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/92 (39%), Positives = 54/92 (58%), Gaps = 7/92 (7%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL----EGYLVKISDTAG 276 +I ++G N GKSSL NAL + IV+D+PGTTRD + +DLD E +++DTAG Sbjct: 182 RISLVGRPNVGKSSLGNALLESTRLIVSDVPGTTRDSVELDLDYQKDGESIKFRLADTAG 241 Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLL 305 +R + VE RT +E +D++ L+ Sbjct: 242 LRSKRKVGNPVEYFSNVRTQHAIERSDVVFLV 273 Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 36/56 (64%), Gaps = 3/56 (5%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 + ++G N GKS LFN L + ++IV D+PG TRD+++ ++ + L+ DT GI Sbjct: 8 VALVGRPNVGKSRLFNRLCGRRMSIVHDMPGVTRDLISTEVRDDYVLL---DTGGI 60 >gi|259500656|ref|ZP_05743558.1| ribosome-associated GTPase EngA [Lactobacillus iners DSM 13335] gi|259168040|gb|EEW52535.1| ribosome-associated GTPase EngA [Lactobacillus iners DSM 13335] Length = 442 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/185 (25%), Positives = 90/185 (48%), Gaps = 29/185 (15%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 N + I+G N GKSS+ N++ ++ IV D+ GTTRD + + +G I DTAGI Sbjct: 180 NNIRFSIIGRPNVGKSSIVNSILGENRVIVADMEGTTRDAIDTIFEKDGQKYTIVDTAGI 239 Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLLKE-----INSKKEI---SFPKNIDFIFIG 326 R + VEK + R+ +E +D+ +++ + I K I + I Sbjct: 240 RRKGKVYEKVEKYSVMRSISAIEQSDVAIIVIDASVGIIEQDKHIAGYAHDAGKGVIIAV 299 Query: 327 TKSDLYSTYT-----------EEYDHL-------ISSFTGEGLEELINKIKSILSNKFKK 368 K D+ S T +E+ +L +S+ TG+ +E++++ +K++ N+ ++ Sbjct: 300 NKWDVPSKTTTSMQDFVKVIRQEFQYLDYAPIVFVSAKTGQRIEDIVSLVKNVKENQQRR 359 Query: 369 LPFSI 373 + S+ Sbjct: 360 IQSSV 364 Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 50/87 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS++FN + VAIV D PG TRD + + G + DT GI D Sbjct: 13 VALVGRPNVGKSTIFNRIINSRVAIVEDQPGVTRDRIYANAQWMGKQFVLVDTGGITFED 72 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI 308 +++E++ + + + AD+I++L ++ Sbjct: 73 NVIEEQIKTQAEIAINEADVIVMLSDV 99 >gi|257453876|ref|ZP_05619154.1| ribosome-associated GTPase EngA [Enhydrobacter aerosaccus SK60] gi|257448803|gb|EEV23768.1| ribosome-associated GTPase EngA [Enhydrobacter aerosaccus SK60] Length = 467 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 55/91 (60%), Gaps = 3/91 (3%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 +G +I I+G N GKS+L N L ++ +V D+PGTTRD + I + + + DTAG+ Sbjct: 175 DGLRIAIIGRPNVGKSTLVNRLLGEERVVVFDMPGTTRDSIYIPYERDNRHYVLIDTAGV 234 Query: 278 RET---DDIVEKEGIKRTFLEVENADLILLL 305 R D+ VEK + +T +++A +++++ Sbjct: 235 RRRGRIDEKVEKFSVVKTLQAIKDAHVVIVV 265 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 5/97 (5%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D+ G TRD D E + DT GI E D Sbjct: 5 VALIGRPNVGKSTLFNQLTRSRQALVADLAGLTRDRQYGDATFEEKSFIVIDTGGIGEVD 64 Query: 282 D---IVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + ++ ++ + AD+I+ + ++S+ I+ Sbjct: 65 EGDGTIDDYMSHQSHTAIHEADIIVFV--VDSRAGIT 99 >gi|237713807|ref|ZP_04544288.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262409286|ref|ZP_06085829.1| GTP-binding protein Era [Bacteroides sp. 2_1_22] gi|294644703|ref|ZP_06722452.1| small GTP-binding protein domain protein [Bacteroides ovatus SD CC 2a] gi|294805936|ref|ZP_06764803.1| small GTP-binding protein domain protein [Bacteroides xylanisolvens SD CC 1b] gi|229446254|gb|EEO52045.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262352738|gb|EEZ01835.1| GTP-binding protein Era [Bacteroides sp. 2_1_22] gi|292639966|gb|EFF58235.1| small GTP-binding protein domain protein [Bacteroides ovatus SD CC 2a] gi|294446818|gb|EFG15418.1| small GTP-binding protein domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 396 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/134 (35%), Positives = 70/134 (52%), Gaps = 14/134 (10%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276 N I + G N+GKSSL NAL +D A+V++ PGTT D+++ ++++G DT G Sbjct: 10 NRLHITLFGRRNSGKSSLINALTGQDTALVSNTPGTTTDLVSKAMEIQGIGPCLFIDTPG 69 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISF---PKNIDFIFIGTK-- 328 + ++ E I RT +E D+ LLL E + +KEI KNI I + K Sbjct: 70 FDDEGELGELR-ISRTLKAIEKTDIALLLCEDTTFFHEKEILALLKEKNIPVIPVLNKID 128 Query: 329 ----SDLYSTYTEE 338 SD +TY EE Sbjct: 129 IRENSDHLATYIEE 142 >gi|224417838|ref|ZP_03655844.1| GTP-binding protein EngA [Helicobacter canadensis MIT 98-5491] Length = 473 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/84 (41%), Positives = 50/84 (59%), Gaps = 1/84 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G NAGKSSLFN K +AI ++I GTTRDV ++ L+ + DT G+ E+D Sbjct: 15 IAIMGRPNAGKSSLFNRFCKSRIAITSEIAGTTRDVKKANVSLKDTPFLLLDTGGLDESD 74 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + K + E+ADLIL + Sbjct: 75 SLFV-QVTKHSHNAGESADLILYV 97 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/91 (37%), Positives = 53/91 (58%), Gaps = 2/91 (2%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKSSL NAL ++ ++V+ GTT D + ++EG V DTAGIR Sbjct: 207 IGIIGRVNVGKSSLLNALLGQERSVVSSKAGTTIDPVDEMGEIEGRKVNFVDTAGIRRRG 266 Query: 282 DI--VEKEGIKRTFLEVENADLILLLKEINS 310 I +EK + RT ++ +D+ +L+ + +S Sbjct: 267 KIEGLEKFALNRTREILKRSDIAVLVLDASS 297 >gi|166030917|ref|ZP_02233746.1| hypothetical protein DORFOR_00598 [Dorea formicigenerans ATCC 27755] gi|166029184|gb|EDR47941.1| hypothetical protein DORFOR_00598 [Dorea formicigenerans ATCC 27755] Length = 442 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSS+ N L + IV+DI GTTRD + ++ G DTAG+R Sbjct: 179 RVAIVGKPNVGKSSIINKLLGEQRVIVSDIAGTTRDAIDTEIVHNGKEYVFIDTAGLRRK 238 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + I +E+ I RT VE AD++L++ Sbjct: 239 NKIKEELERYSIIRTVTAVERADVVLVV 266 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 53/88 (60%), Gaps = 1/88 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFNALA + ++IV D PG TRD + D+ + DT GI E+ Sbjct: 6 VAIVGRPNVGKSTLFNALAGEKISIVKDTPGVTRDRIYADVSWLDKDFTLIDTGGIEPES 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308 DI+ + ++ + ++ +D+I+ + ++ Sbjct: 66 KDIILSQMREQAQIAIDTSDVIIFITDV 93 >gi|153816157|ref|ZP_01968825.1| hypothetical protein RUMTOR_02405 [Ruminococcus torques ATCC 27756] gi|317500477|ref|ZP_07958701.1| GTP-binding protein engA [Lachnospiraceae bacterium 8_1_57FAA] gi|331089422|ref|ZP_08338321.1| GTP-binding protein engA [Lachnospiraceae bacterium 3_1_46FAA] gi|145846492|gb|EDK23410.1| hypothetical protein RUMTOR_02405 [Ruminococcus torques ATCC 27756] gi|316898232|gb|EFV20279.1| GTP-binding protein engA [Lachnospiraceae bacterium 8_1_57FAA] gi|330404790|gb|EGG84328.1| GTP-binding protein engA [Lachnospiraceae bacterium 3_1_46FAA] Length = 441 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSS+ N L ++ IV+DI GTTRD + ++ G DTAG+R Sbjct: 179 RVAIVGKPNVGKSSIINKLLGENRVIVSDIAGTTRDAIDTEILHNGKEYIFIDTAGLRRK 238 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + I +E+ I RT VE AD++L++ Sbjct: 239 NKIKEELERYSIIRTVTAVERADVVLMV 266 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 53/88 (60%), Gaps = 1/88 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFNALA + ++IV D PG TRD + D+ + DT GI ++ Sbjct: 6 VAIVGRPNVGKSTLFNALAGEMISIVKDTPGVTRDRIYADVTWLDKEFTMIDTGGIEPDS 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308 DI+ + ++ + ++ AD+I+ + ++ Sbjct: 66 KDIILSQMREQAQIAIDTADVIIFITDV 93 >gi|120601244|ref|YP_965644.1| GTP-binding protein EngA [Desulfovibrio vulgaris DP4] gi|166198712|sp|A1V9V1|DER_DESVV RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|120561473|gb|ABM27217.1| small GTP-binding protein [Desulfovibrio vulgaris DP4] Length = 495 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ +LG NAGKSSL NAL + IV+D+ GTTRD + + + +G DTAG+R Sbjct: 232 RLCMLGRPNAGKSSLVNALTGTNRMIVSDVAGTTRDSVDVAFEKDGLSYTFVDTAGVRRR 291 Query: 281 D---DIVEKEGIKRTFLEVENADLILLL 305 D VE+ + + A + LL+ Sbjct: 292 SRITDTVERYSVNSSLKSTTKAHVTLLV 319 Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust. Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 16/74 (21%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL----------------TIDLDL 264 KI ++G N GKS+LFN L + + AI D+PG TRD + T + L Sbjct: 4 KIALVGRPNVGKSTLFNRLIRSNRAITHDMPGVTRDRMEGIVRGRNKRPFGIIDTGGITL 63 Query: 265 EGYLVKISDTAGIR 278 +G+ AGIR Sbjct: 64 DGHAAVAEGPAGIR 77 >gi|325912018|ref|ZP_08174420.1| ribosome biogenesis GTPase Der [Lactobacillus iners UPII 143-D] gi|325476203|gb|EGC79367.1| ribosome biogenesis GTPase Der [Lactobacillus iners UPII 143-D] Length = 435 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/185 (25%), Positives = 90/185 (48%), Gaps = 29/185 (15%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 N + I+G N GKSS+ N++ ++ IV D+ GTTRD + + +G I DTAGI Sbjct: 173 NNIRFSIIGRPNVGKSSIVNSILGENRVIVADMEGTTRDAIDTIFEKDGQKYTIVDTAGI 232 Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLLKE-----INSKKEI---SFPKNIDFIFIG 326 R + VEK + R+ +E +D+ +++ + I K I + I Sbjct: 233 RRKGKVYEKVEKYSVMRSISAIEQSDVAIIVIDASVGIIEQDKHIAGYAHDAGKGVIIAV 292 Query: 327 TKSDLYSTYT-----------EEYDHL-------ISSFTGEGLEELINKIKSILSNKFKK 368 K D+ S T +E+ +L +S+ TG+ +E++++ +K++ N+ ++ Sbjct: 293 NKWDVPSKTTTSMQDFVKVIRQEFQYLDYAPIVFVSAKTGQRIEDIVSLVKNVKENQQRR 352 Query: 369 LPFSI 373 + S+ Sbjct: 353 IQSSV 357 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 50/87 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS++FN + VAIV D PG TRD + + G + DT GI D Sbjct: 6 VALVGRPNVGKSTIFNRIINSRVAIVEDQPGVTRDRIYANAQWMGKQFVLVDTGGITFED 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI 308 +++E++ + + + AD+I+LL ++ Sbjct: 66 NVIEEQIKTQAEIAINEADVIVLLSDV 92 >gi|242255884|gb|ACS88926.1| GTPase [Helicobacter pylori] gi|242255886|gb|ACS88927.1| GTPase [Helicobacter pylori] Length = 170 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/82 (41%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-N 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|161833759|ref|YP_001597955.1| GTP-binding protein EngA [Candidatus Sulcia muelleri GWSS] gi|293977869|ref|YP_003543299.1| ribosome-associated GTPase EngA [Candidatus Sulcia muelleri DMIN] gi|229807527|sp|A8Z608|DER_SULMW RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|152206249|gb|ABS30559.1| GTP-binding protein EngA [Candidatus Sulcia muelleri GWSS] gi|292667800|gb|ADE35435.1| ribosome-associated GTPase EngA [Candidatus Sulcia muelleri DMIN] Length = 433 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/92 (38%), Positives = 53/92 (57%), Gaps = 3/92 (3%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 +N +I I+G N GKS+L N L K+ IVT+I GTTRD + + G + DTAG Sbjct: 172 KNIPRIAIVGRPNVGKSTLINTLLNKNKNIVTNISGTTRDSIDVLYSKFGIECILVDTAG 231 Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLL 305 IR+ +I +E + R ++N+D+ LL+ Sbjct: 232 IRKKKNIKEDIEFYSVMRAIKSIQNSDVSLLI 263 Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust. Identities = 51/175 (29%), Positives = 79/175 (45%), Gaps = 23/175 (13%) Query: 221 KIV-ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IR 278 KIV I+G N GKS+LFN + +IV G TRD + G + DT G Sbjct: 3 KIVSIVGRPNVGKSTLFNRIIGYKKSIVNSKSGITRDRNYGFCNWNGIEFCLIDTGGYTN 62 Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEIN----------SKKEISFPKNIDFIF--IG 326 E+ +I +K+ ++ + +D+IL L + + SK+ K+I + I Sbjct: 63 ESKNIFDKKICEQFLFALAESDVILFLVDPSNDILGIDYDISKRIRKLKKSIYLVINKID 122 Query: 327 TKSDLYSTY-------TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374 ++Y+TY T+ Y ISS G G E+L++ I S K +IP Sbjct: 123 IYKNIYNTYKYCKFGITKTY--CISSINGTGTEKLLDSIVSNFDKNIKIYKKNIP 175 >gi|295692881|ref|YP_003601491.1| GTP-binding protein enga [Lactobacillus crispatus ST1] gi|295030987|emb|CBL50466.1| GTP-binding protein engA [Lactobacillus crispatus ST1] Length = 435 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/179 (26%), Positives = 84/179 (46%), Gaps = 29/179 (16%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 ++G N GKSS+ N L +D IV + GTTRD + +G K+ DTAGIR + Sbjct: 179 VIGRPNVGKSSIVNKLLGEDRVIVANEEGTTRDAVDTPFTHDGVKFKVVDTAGIRRRGKV 238 Query: 284 ---VEKEGIKRTFLEVENADLILLLKEINS-----KKEI---SFPKNIDFIFIGTKSDL- 331 EK + R +E +D++LL+ + ++ K + + I + K DL Sbjct: 239 YEKTEKYSVMRAMSAIERSDVVLLVIDASTGIREQDKHVAGYAHEAGRGIIIVVNKWDLP 298 Query: 332 --YSTYTEEYDH---------------LISSFTGEGLEELINKIKSILSNKFKKLPFSI 373 ST +E++ +S+ TG+ L+++ N +K + N+ +++ S+ Sbjct: 299 KKNSTSAKEFEREIRDEFQYLDYAPILFVSAKTGQRLDQIPNMVKEVYDNQNQRIQSSV 357 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 48/87 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN + + +AIV D PG TRD + G+ + DT GI Sbjct: 6 VAIVGQPNVGKSTLFNRIINQRLAIVEDKPGVTRDRNYAQAEWMGHKFDLIDTGGITWEG 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI 308 +E+E + + +E AD+I++L + Sbjct: 66 GKIEEEIRAQAEIAIEEADVIVMLTNV 92 >gi|240850057|ref|YP_002971450.1| GTP-binding protein EngA [Bartonella grahamii as4aup] gi|240267180|gb|ACS50768.1| GTP-binding protein EngA [Bartonella grahamii as4aup] Length = 474 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/158 (31%), Positives = 75/158 (47%), Gaps = 24/158 (15%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET- 280 I I+G N GKS+LFN L + +A+V D PG TRD L+ + DTAG+ E Sbjct: 5 IAIVGRPNVGKSTLFNRLVGQKLALVDDKPGVTRDRRIHAAKLQDLRFDVVDTAGLEEAG 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF-----------IFIGTKS 329 D +E T ++ ADLIL + ++K I+ P +++F + + KS Sbjct: 65 DHTLEGRMRSHTKAAIDEADLILFV--FDAKSGIT-PSDLNFASLVRKSGKPIVLVANKS 121 Query: 330 DLYSTYTEEYDH---------LISSFTGEGLEELINKI 358 + + EY+ LIS+ G GL +L + I Sbjct: 122 ESRAATGGEYEAWSLGLGEPCLISAEHGLGLSDLRDAI 159 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 39/66 (59%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I I G N GKS+L N++ K++ + G TRD +++D + G +K+ DTAG+R Sbjct: 205 RIAIAGRPNTGKSTLINSMLKQERLLTGPEAGLTRDSISVDWEWRGRHIKLFDTAGLRRK 264 Query: 281 DDIVEK 286 I EK Sbjct: 265 SKIQEK 270 >gi|122702225|emb|CAL88303.1| GTPase [Helicobacter pylori] Length = 170 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/82 (41%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + ++LIL Sbjct: 69 ALLSKEIKALNLKAAQMSNLIL 90 >gi|189485147|ref|YP_001956088.1| GTP-binding protein EngA [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287106|dbj|BAG13627.1| GTP-binding protein EngA [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 441 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 54/88 (61%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 KI+++G N GKSS N +AK++ +IV D PGTTRD LT + +G ++DTAG+ Sbjct: 178 KIILVGKPNVGKSSFINTVAKEERSIVHDTPGTTRDSLTARIQSDGKEYILTDTAGLHRG 237 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305 +T D +E T +E+AD+ +L+ Sbjct: 238 NKTKDGMEYLSNLSTGHAIEDADVAVLI 265 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 45/85 (52%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+LFN L + AI+ + PGTTRD ++ +DTAG Sbjct: 6 KVAIVGRPNVGKSALFNRLIGRKKAIIHETPGTTRDRNDHEVSWRDKNFIATDTAGWSTD 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 K+ ++ + VE +D++L + Sbjct: 66 ISAFSKDMSRQLDIAVEKSDIVLFV 90 >gi|227879096|ref|ZP_03996985.1| GTP-binding protein EngA [Lactobacillus crispatus JV-V01] gi|256843085|ref|ZP_05548573.1| ribosome-associated GTPase EngA [Lactobacillus crispatus 125-2-CHN] gi|256850263|ref|ZP_05555692.1| phosphoglycerate dehydrogenase [Lactobacillus crispatus MV-1A-US] gi|262046345|ref|ZP_06019307.1| ribosome-associated GTPase EngA [Lactobacillus crispatus MV-3A-US] gi|293379768|ref|ZP_06625900.1| ribosome-associated GTPase EngA [Lactobacillus crispatus 214-1] gi|312977269|ref|ZP_07789017.1| ribosome-associated GTPase EngA [Lactobacillus crispatus CTV-05] gi|227861337|gb|EEJ68967.1| GTP-binding protein EngA [Lactobacillus crispatus JV-V01] gi|256614505|gb|EEU19706.1| ribosome-associated GTPase EngA [Lactobacillus crispatus 125-2-CHN] gi|256712900|gb|EEU27892.1| phosphoglycerate dehydrogenase [Lactobacillus crispatus MV-1A-US] gi|260573216|gb|EEX29774.1| ribosome-associated GTPase EngA [Lactobacillus crispatus MV-3A-US] gi|290923677|gb|EFE00548.1| ribosome-associated GTPase EngA [Lactobacillus crispatus 214-1] gi|310895700|gb|EFQ44766.1| ribosome-associated GTPase EngA [Lactobacillus crispatus CTV-05] Length = 435 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/179 (26%), Positives = 84/179 (46%), Gaps = 29/179 (16%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 ++G N GKSS+ N L +D IV + GTTRD + +G K+ DTAGIR + Sbjct: 179 VIGRPNVGKSSIVNKLLGEDRVIVANEEGTTRDAVDTPFTHDGVKFKVVDTAGIRRRGKV 238 Query: 284 ---VEKEGIKRTFLEVENADLILLLKEINS-----KKEI---SFPKNIDFIFIGTKSDL- 331 EK + R +E +D++LL+ + ++ K + + I + K DL Sbjct: 239 YEKTEKYSVMRAMSAIERSDVVLLVLDASTGIREQDKHVAGYAHEAGRGIIIVVNKWDLP 298 Query: 332 --YSTYTEEYDH---------------LISSFTGEGLEELINKIKSILSNKFKKLPFSI 373 ST +E++ +S+ TG+ L+++ N +K + N+ +++ S+ Sbjct: 299 KKNSTSAKEFEREIRDEFQYLDYAPILFVSAKTGQRLDQIPNMVKEVYDNQNQRIQSSV 357 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 48/87 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN + + +AIV D PG TRD + G+ + DT GI Sbjct: 6 VAIVGQPNVGKSTLFNRIINQRLAIVEDKPGVTRDRNYAQAEWMGHKFDLIDTGGITWEG 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI 308 +E+E + + +E AD+I++L + Sbjct: 66 GKIEEEIRAQAEIAIEEADVIVMLTNV 92 >gi|49475207|ref|YP_033248.1| GTP-binding protein EngA [Bartonella henselae str. Houston-1] gi|81696225|sp|Q6G5J7|DER_BARHE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|49238012|emb|CAF27217.1| GTP-binding protein [Bartonella henselae str. Houston-1] Length = 475 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/158 (31%), Positives = 75/158 (47%), Gaps = 24/158 (15%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET- 280 I I+G N GKS+LFN L + +A+V D PG TRD L+ + DTAG+ ET Sbjct: 5 IAIVGRPNVGKSTLFNRLVGQKLALVDDKPGVTRDRRVHAATLQDLRFDVIDTAGLEETG 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF-----------IFIGTKS 329 D +E T ++ ADLIL + ++K I+ P +++F + + KS Sbjct: 65 DHTLEGRMRAHTKAAIDEADLILFV--FDAKSGIT-PSDLNFASLVRKSGKPIVLVANKS 121 Query: 330 DLYSTYTEEYDHL---------ISSFTGEGLEELINKI 358 + + EY+ IS+ G GL +L + I Sbjct: 122 ESKAAIGGEYEAWSLGLGEPCSISAEHGLGLSDLRDAI 159 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 37/66 (56%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I + G N GKS+L N + +D + G TRD +++D + G +K+ DTAG+R Sbjct: 206 RIAVAGRPNTGKSTLINRMLGQDRLLTGPEAGLTRDSISVDWEWRGRHIKLFDTAGLRRK 265 Query: 281 DDIVEK 286 I EK Sbjct: 266 SKIQEK 271 >gi|296282892|ref|ZP_06860890.1| GTP-binding protein EngA [Citromicrobium bathyomarinum JL354] Length = 464 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/95 (38%), Positives = 53/95 (55%), Gaps = 1/95 (1%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +++I+G N GKS+LFN LA K +A+V D PG TRD D+ L G I DTAG E Sbjct: 4 RVIIIGRPNVGKSTLFNRLAGKKLALVDDQPGVTRDRRFGDVTLAGMRFTIVDTAGW-ED 62 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 +D G R EV AD +L ++++ ++ Sbjct: 63 EDPSTLPGRMRMQTEVSIADADAVLFVVDARAGLT 97 Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 6/72 (8%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL------EGYLVKISDT 274 K+ I+G NAGKS+L N + +D + G TRD + ID + + V++ DT Sbjct: 192 KLAIVGRPNAGKSTLINRMLGEDRLLTGPEAGITRDSIAIDWEWTDPDSGDTREVRLIDT 251 Query: 275 AGIRETDDIVEK 286 AG+R+ ++VEK Sbjct: 252 AGMRKKRNVVEK 263 >gi|189463677|ref|ZP_03012462.1| hypothetical protein BACINT_00008 [Bacteroides intestinalis DSM 17393] gi|189438627|gb|EDV07612.1| hypothetical protein BACINT_00008 [Bacteroides intestinalis DSM 17393] Length = 437 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 53/88 (60%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G NAGKSS+ NA ++ IVT+I GTTRD + + G+ + DTAGIR+ Sbjct: 177 RFAVVGRPNAGKSSIVNAFIGEERNIVTEIAGTTRDSIYTRYNKFGFDFYLVDTAGIRKK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + + +E + R+ +ENAD+ +L+ Sbjct: 237 NKVNEDLEYYSVIRSIRSIENADVCILM 264 Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 35/91 (38%), Positives = 51/91 (56%), Gaps = 1/91 (1%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277 G + I+G N GKS+LFN L K AIV + GTTRD + G + DT G + Sbjct: 2 GNLVAIVGRPNVGKSTLFNRLTKTRQAIVNEEAGTTRDRQYGKSEWLGKEFSVVDTGGWV 61 Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEI 308 +DDI E+E K+ + V+ AD+IL + ++ Sbjct: 62 VNSDDIFEEEIRKQVLMAVDEADVILFVVDV 92 >gi|145589468|ref|YP_001156065.1| small GTP-binding protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|189037153|sp|A4SYD7|DER_POLSQ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|145047874|gb|ABP34501.1| small GTP-binding protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 454 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/179 (24%), Positives = 85/179 (47%), Gaps = 34/179 (18%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI ++G N GKS+L N L ++ I D+PGTTRD + + + G + DTAG+R Sbjct: 182 KIAVVGRPNVGKSTLINKLIGEERVIAFDMPGTTRDAIEVPFERNGKPYILVDTAGLRRR 241 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTE 337 + +EK + +T + + ++++L+ ++++++IS Sbjct: 242 GKVFEAIEKFSVVKTLQAIADCNVVILM--LDAQQDIS---------------------- 277 Query: 338 EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN 396 E D I+ F E L+ + NK+ L + R ++Q +R+L+ A+++ Sbjct: 278 EQDAHIAGFIVEAGRALV-----VAVNKWDGLDAYVKERAR--LEIAQKLRFLDFANVH 329 Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust. Identities = 18/35 (51%), Positives = 22/35 (62%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 I I+G N GKS+LFN L + A+V D G TRD Sbjct: 5 ITIVGRPNVGKSTLFNRLTRSRDALVADFSGLTRD 39 >gi|124008576|ref|ZP_01693268.1| GTP-binding protein EngA [Microscilla marina ATCC 23134] gi|123985950|gb|EAY25807.1| GTP-binding protein EngA [Microscilla marina ATCC 23134] Length = 436 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 49/88 (55%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 KI I+G NAGKSSL N L K+ +IVTDI GTTRD + G ++DTAG+R Sbjct: 178 KIAIVGRPNAGKSSLVNVLTGKERSIVTDIAGTTRDSVNTHYKAFGKNFILTDTAGLRRK 237 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305 D +E R +E +D+ +++ Sbjct: 238 SRVKDNIEFYSTMRALRSLEASDICIVM 265 Score = 39.7 bits (91), Expect = 0.89, Method: Compositional matrix adjust. Identities = 23/85 (27%), Positives = 46/85 (54%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 + I+G N GKS+LFN L ++ +I+ + G TRD + + G + DT G + + Sbjct: 5 VAIVGRPNVGKSTLFNRLIEQRKSIMDNQSGVTRDRVYGQAEWIGKFFTVIDTGGYVVGS 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 +D+ E ++ + +E + ++L + Sbjct: 65 EDVFEGAIREQVEIAIEESSVVLFV 89 >gi|122702207|emb|CAL88294.1| GTPase [Helicobacter pylori] gi|122702209|emb|CAL88295.1| GTPase [Helicobacter pylori] Length = 170 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/82 (41%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-E 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|313665450|ref|YP_004047321.1| ribosome-associated GTPase EngA [Mycoplasma leachii PG50] gi|312949987|gb|ADR24583.1| ribosome-associated GTPase EngA [Mycoplasma leachii PG50] Length = 435 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/98 (37%), Positives = 56/98 (57%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI I+G N GKSSL N+L ++ IV++I GTT D + I + DTAGIR+ Sbjct: 176 KIAIIGRPNVGKSSLVNSLVNENRMIVSEIEGTTLDAVDISFSYNKNKYTVIDTAGIRKK 235 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + VEK R+ + N+D++LL+ I++ K I+ Sbjct: 236 SKLGQTVEKYSYLRSLSAITNSDIVLLM--IDATKPIT 271 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 45/84 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKSSLFN + K+ +IV + PG TRD + + + + DT GI Sbjct: 6 VAIVGKPNVGKSSLFNRIIKEKKSIVDNKPGVTRDRIYSNAEWLTREFILVDTGGISIDQ 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + E +T + +E AD+I+ + Sbjct: 66 QLFSNEIQIQTQIAIEQADVIIFV 89 >gi|253827178|ref|ZP_04870063.1| GTP-binding protein EngA [Helicobacter canadensis MIT 98-5491] gi|313141379|ref|ZP_07803572.1| GTP-binding protein engA [Helicobacter canadensis MIT 98-5491] gi|253510584|gb|EES89243.1| GTP-binding protein EngA [Helicobacter canadensis MIT 98-5491] gi|313130410|gb|EFR48027.1| GTP-binding protein engA [Helicobacter canadensis MIT 98-5491] Length = 466 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/84 (41%), Positives = 50/84 (59%), Gaps = 1/84 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G NAGKSSLFN K +AI ++I GTTRDV ++ L+ + DT G+ E+D Sbjct: 8 IAIMGRPNAGKSSLFNRFCKSRIAITSEIAGTTRDVKKANVSLKDTPFLLLDTGGLDESD 67 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + K + E+ADLIL + Sbjct: 68 SLFV-QVTKHSHNAGESADLILYV 90 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/91 (37%), Positives = 53/91 (58%), Gaps = 2/91 (2%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKSSL NAL ++ ++V+ GTT D + ++EG V DTAGIR Sbjct: 200 IGIIGRVNVGKSSLLNALLGQERSVVSSKAGTTIDPVDEMGEIEGRKVNFVDTAGIRRRG 259 Query: 282 DI--VEKEGIKRTFLEVENADLILLLKEINS 310 I +EK + RT ++ +D+ +L+ + +S Sbjct: 260 KIEGLEKFALNRTREILKRSDIAVLVLDASS 290 >gi|323486971|ref|ZP_08092286.1| hypothetical protein HMPREF9474_04037 [Clostridium symbiosum WAL-14163] gi|323692018|ref|ZP_08106266.1| GTP-binding protein engA [Clostridium symbiosum WAL-14673] gi|323399743|gb|EGA92126.1| hypothetical protein HMPREF9474_04037 [Clostridium symbiosum WAL-14163] gi|323503941|gb|EGB19755.1| GTP-binding protein engA [Clostridium symbiosum WAL-14673] Length = 444 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I I+G N GKSS+ N L ++ IV+DI GTTRD + ++ G DTAG+R Sbjct: 181 RIAIVGKPNVGKSSIINKLLGENRVIVSDIAGTTRDAVDTEIIHNGTEYVFIDTAGLRRK 240 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 I +E+ I RT VE AD++L++ Sbjct: 241 SKIKEELERYSIIRTVTAVERADVVLVV 268 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 1/88 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + ++G N GKS+LFN LA ++IV D PG TRD + D + DT GI +T Sbjct: 8 VAVVGRPNVGKSTLFNVLAGDMISIVKDTPGVTRDRIYADCTWLDKAFTLIDTGGIEPDT 67 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308 D++ + ++ + + AD+I+ + ++ Sbjct: 68 KDVILAQMREQAEIAIATADVIIFIVDV 95 >gi|320547399|ref|ZP_08041687.1| ribosome-associated GTPase EngA [Streptococcus equinus ATCC 9812] gi|320447944|gb|EFW88699.1| ribosome-associated GTPase EngA [Streptococcus equinus ATCC 9812] Length = 436 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 76/153 (49%), Gaps = 31/153 (20%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRE 279 K ++G N GKSSL NA+ ++ I + I GTTRD + + D EG + DTAG+R+ Sbjct: 176 KFSLIGRPNVGKSSLINAILGEERVIASPIAGTTRDAIDTNFTDSEGQEYTMIDTAGMRK 235 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336 + + EK + R+ ++ +D++L++ IN+++ I Sbjct: 236 SGKVYENTEKYSVMRSMRAIDRSDIVLMV--INAEEGI---------------------- 271 Query: 337 EEYDHLISSF---TGEGLEELINKIKSILSNKF 366 EYD I+ F G+G+ ++NK +I N + Sbjct: 272 REYDKRIAGFAHEAGKGIIIVVNKWDTIEKNNY 304 Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 45/84 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN +A + ++IV D+ G TRD + + + DT GI + D Sbjct: 6 VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTTGEWLNRKFSLIDTGGIDDVD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + + + AD+I+ + Sbjct: 66 APFMEQIKHQADIAMTEADVIVFV 89 >gi|222086678|ref|YP_002545212.1| GTP-binding protein [Agrobacterium radiobacter K84] gi|254783132|sp|B9J7W1|DER_AGRRK RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|221724126|gb|ACM27282.1| GTP-binding protein [Agrobacterium radiobacter K84] Length = 475 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/87 (39%), Positives = 49/87 (56%), Gaps = 1/87 (1%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 + + I+G N GKS+LFN L K +A+V D PG TRD + L +I DTAG+ E Sbjct: 3 FTVAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGEAKLIDLRFRIVDTAGLEE 62 Query: 280 TD-DIVEKEGIKRTFLEVENADLILLL 305 D + +E +T L ++ ADL L + Sbjct: 63 ADEETLEGRMRAQTELAIDEADLTLFV 89 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 37/66 (56%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G NAGKS+L N +D + G TRD +++D G VK+ DTAG+R Sbjct: 207 RVAIVGRPNAGKSTLINRFLGEDRLLTGPEAGITRDSISVDWTWRGRTVKMFDTAGMRRK 266 Query: 281 DDIVEK 286 + EK Sbjct: 267 ARVTEK 272 >gi|291087651|ref|ZP_06347028.2| ribosome-associated GTPase EngA [Clostridium sp. M62/1] gi|291074566|gb|EFE11930.1| ribosome-associated GTPase EngA [Clostridium sp. M62/1] Length = 446 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 51/154 (33%), Positives = 77/154 (50%), Gaps = 23/154 (14%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I I+G N GKSS+ N L ++ IV++I GTTRD + ++ G DTAG+R Sbjct: 183 RIAIVGKPNVGKSSIVNKLLGENRVIVSNIAGTTRDAVDTEIVHNGTEYVFIDTAGLRRK 242 Query: 281 DDI---VEKEGIKRTFLEVENADLILL-------LKEINSK-KEISFPKNIDFIFIGTKS 329 + I +E+ I RT VE AD++L+ + E ++K I+ + I + K Sbjct: 243 NKIKEELERYSIIRTVTAVERADVVLVVIDATEGVTEQDAKIAGIAHDRGKGIIIVVNKW 302 Query: 330 DLYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363 D E+ D I +T NKIK+ILS Sbjct: 303 DA----IEKNDKTIYEYT--------NKIKTILS 324 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 28/88 (31%), Positives = 50/88 (56%), Gaps = 1/88 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + ++G N GKS+LFN LA + ++IV D PG TRD + D + DT GI ++ Sbjct: 10 VAVVGCPNVGKSTLFNVLAGEMISIVKDTPGVTRDRIYADCTWLDKAFTLIDTGGIEPDS 69 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308 DI+ + ++ + + AD+I+ + ++ Sbjct: 70 RDIILAQMREQAEIAIATADVIIFIVDV 97 >gi|157414681|ref|YP_001481937.1| GTP-binding protein EngA [Campylobacter jejuni subsp. jejuni 81116] gi|172047057|sp|A8FKH3|DER_CAMJ8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|157385645|gb|ABV51960.1| putative GTP-binding protein [Campylobacter jejuni subsp. jejuni 81116] gi|307747321|gb|ADN90591.1| GTP-binding protein engA [Campylobacter jejuni subsp. jejuni M1] gi|315932681|gb|EFV11611.1| small GTP-binding domain protein [Campylobacter jejuni subsp. jejuni 327] Length = 460 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 54/85 (63%), Gaps = 3/85 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I+++G N GKSSLFN +A++ +AI +DI GTTRD + + + D+ G+ E+D Sbjct: 4 IILIGKPNVGKSSLFNRMARQRIAITSDISGTTRDTNKTQIHIHSKKAMLIDSGGLDESD 63 Query: 282 DIVEKEGIKRTFLEV-ENADLILLL 305 ++ + +K+ L+V + +D+IL L Sbjct: 64 ELF--KNVKKNTLKVAKESDIILYL 86 Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 81/157 (51%), Gaps = 27/157 (17%) Query: 154 LSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGK-- 211 L LY +W++K H F+ D EEE++++F H +GK Sbjct: 149 LDELY-EWLEKFLH-EEFLIPD----EEENLEDFLE----------------HYEEGKEF 186 Query: 212 -LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270 E+ +N ++ I+G N GKSSL NAL K++ ++V+ I GTT D + + + +++ Sbjct: 187 QFKEVDQNHIRVGIVGRVNVGKSSLLNALVKQERSVVSSIAGTTIDPVNESVVHKDKVIE 246 Query: 271 ISDTAGIRETDDI--VEKEGIKRTFLEVENADLILLL 305 DTAGIR+ I +E+ + RT + ++ + LL+ Sbjct: 247 FVDTAGIRKRGKIQGLERFALNRTEKILSHSQIALLV 283 >gi|122702429|emb|CAL88405.1| GTPase [Helicobacter pylori] Length = 170 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D G TRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGATRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122702513|emb|CAL88447.1| GTPase [Helicobacter pylori] Length = 170 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN L ++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLVRERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|86151224|ref|ZP_01069439.1| GTPase family protein [Campylobacter jejuni subsp. jejuni 260.94] gi|86153811|ref|ZP_01072014.1| GTP-binding protein engA [Campylobacter jejuni subsp. jejuni HB93-13] gi|121612239|ref|YP_001000097.1| GTP-binding protein EngA [Campylobacter jejuni subsp. jejuni 81-176] gi|167005055|ref|ZP_02270813.1| GTP-binding protein EngA [Campylobacter jejuni subsp. jejuni 81-176] gi|315123946|ref|YP_004065950.1| GTPase family protein [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|166224324|sp|A1VYA6|DER_CAMJJ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|85841571|gb|EAQ58818.1| GTPase family protein [Campylobacter jejuni subsp. jejuni 260.94] gi|85842772|gb|EAQ59984.1| GTP-binding protein engA [Campylobacter jejuni subsp. jejuni HB93-13] gi|87250505|gb|EAQ73463.1| GTPase family protein [Campylobacter jejuni subsp. jejuni 81-176] gi|315017668|gb|ADT65761.1| GTPase family protein [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 460 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 54/85 (63%), Gaps = 3/85 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I+++G N GKSSLFN +A++ +AI +DI GTTRD + + + D+ G+ E+D Sbjct: 4 IILIGKPNVGKSSLFNRMARQRIAITSDISGTTRDTNKTQIHIHSKKAMLIDSGGLDESD 63 Query: 282 DIVEKEGIKRTFLEV-ENADLILLL 305 ++ + +K+ L+V + +D+IL L Sbjct: 64 ELF--KNVKKNTLKVAKESDIILYL 86 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 81/157 (51%), Gaps = 27/157 (17%) Query: 154 LSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGK-- 211 L LY +W++K H F+ D EEE++++F H +GK Sbjct: 149 LDELY-EWLEKFLH-EEFLIPD----EEENLEDFLE----------------HYEEGKEF 186 Query: 212 -LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270 E+ +N ++ I+G N GKSSL NAL K++ ++V+ I GTT D + + + +++ Sbjct: 187 QFKEVDQNHIRVGIVGRVNVGKSSLLNALVKQERSVVSSIAGTTIDPVNESVVHKDKVIE 246 Query: 271 ISDTAGIRETDDI--VEKEGIKRTFLEVENADLILLL 305 DTAGIR+ I +E+ + RT + ++ + LL+ Sbjct: 247 FVDTAGIRKRGKIQGLERFALNRTEKILSHSQIALLV 283 >gi|332300532|ref|YP_004442453.1| GTP-binding protein engA [Porphyromonas asaccharolytica DSM 20707] gi|332177595|gb|AEE13285.1| GTP-binding protein engA [Porphyromonas asaccharolytica DSM 20707] Length = 436 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 18/168 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 + I+G N GKS+LFN L + AIVT+ GTTRD + I DT G + + Sbjct: 5 VAIVGRPNVGKSTLFNRLTRSRQAIVTEEAGTTRDRQYGHVTWCERTFSIVDTGGWVLRS 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEISF---PKNIDFIFIGTKSDLY 332 DD+ E+E K+ + VE ADLIL + +I + EI+ N I + K+D + Sbjct: 65 DDVFEEEINKQVRIAVEEADLILFVVDILNGVTDLDDEIALMLRQTNKPVILVANKADNF 124 Query: 333 STYTEEYD---------HLISSFTGEGLEELINKIKSILSNKFKKLPF 371 + + + + + IS+ G +L++ I +L + P Sbjct: 125 TQHNDAAEFYTLGIGDPYPISAINGSSTGDLLDHILELLPKEGNHEPL 172 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + I+G NAGKSSL NAL ++ IVTD GTTRD + + D + DTAGIR+ Sbjct: 177 RFAIVGRPNAGKSSLLNALIGEERNIVTDRSGTTRDSIFAEYDKFNQHFYLVDTAGIRKK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E + R +ENAD+ ++L Sbjct: 237 GKVNEDLEYYSVIRAIRAIENADVCIML 264 >gi|313886089|ref|ZP_07819824.1| ribosome biogenesis GTPase Der [Porphyromonas asaccharolytica PR426713P-I] gi|312924435|gb|EFR35209.1| ribosome biogenesis GTPase Der [Porphyromonas asaccharolytica PR426713P-I] Length = 436 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 18/168 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 + I+G N GKS+LFN L + AIVT+ GTTRD + I DT G + + Sbjct: 5 VAIVGRPNVGKSTLFNRLTRSRQAIVTEEAGTTRDRQYGHVTWCERTFSIVDTGGWVLRS 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEISF---PKNIDFIFIGTKSDLY 332 DD+ E+E K+ + VE ADLIL + +I + EI+ N I + K+D + Sbjct: 65 DDVFEEEINKQVRIAVEEADLILFVVDILNGVTDLDDEIALMLRQTNKPVILVANKADNF 124 Query: 333 STYTEEYD---------HLISSFTGEGLEELINKIKSILSNKFKKLPF 371 + + + + + IS+ G +L++ I +L + P Sbjct: 125 TQHNDAAEFYSLGIGDPYPISAINGSSTGDLLDHILELLPKEGNHEPL 172 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + I+G NAGKSSL NAL ++ IVTD GTTRD + + D + DTAGIR+ Sbjct: 177 RFAIVGRPNAGKSSLLNALIGEERNIVTDRSGTTRDSIFAEYDKFNQHFYLVDTAGIRKK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E + R +ENAD+ ++L Sbjct: 237 GKVNEDLEYYSVIRAIRAIENADVCIML 264 >gi|256425494|ref|YP_003126147.1| small GTP-binding protein [Chitinophaga pinensis DSM 2588] gi|256040402|gb|ACU63946.1| small GTP-binding protein [Chitinophaga pinensis DSM 2588] Length = 441 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/93 (34%), Positives = 54/93 (58%), Gaps = 1/93 (1%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277 G+ + I+G N GKS+LFN L ++ AIV D+ G TRD D G + DT G + Sbjct: 3 GFTVAIVGRPNVGKSTLFNRLLEQRKAIVDDVSGVTRDRQYGVADWNGKSFNVIDTGGFV 62 Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINS 310 ++D+ E+E K+ + +E A+L+L + ++ + Sbjct: 63 SRSEDVFEREIRKQVKIAMEEANLLLFMCDVAT 95 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI I+G N GKSSL NAL ++ IV+DIPGTTRD + + + DTAG+R Sbjct: 182 KIAIIGQPNVGKSSLLNALIGEERNIVSDIPGTTRDTIHTHYKMFQKDFVLIDTAGLRRK 241 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + + +E + R ++ AD+ LLL Sbjct: 242 NKVQEDLEFYSVIRAIKAMDEADVCLLL 269 >gi|206901733|ref|YP_002250881.1| ribosome-associated GTPase EngA [Dictyoglomus thermophilum H-6-12] gi|206740836|gb|ACI19894.1| ribosome-associated GTPase EngA [Dictyoglomus thermophilum H-6-12] Length = 380 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + +G N+GKSSL NAL KD +IV++IPGTTRD + + + G I DT G+R Sbjct: 123 RFAFVGRPNSGKSSLLNALIGKDRSIVSEIPGTTRDAVDLVWEFNGKKYIIVDTPGLRRP 182 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E+ +++T + D+ +++ Sbjct: 183 ARVEEGLEELSVRKTLQTIRKIDVAVMV 210 >gi|22298365|ref|NP_681612.1| hypothetical protein tlr0823 [Thermosynechococcus elongatus BP-1] gi|22294544|dbj|BAC08374.1| tlr0823 [Thermosynechococcus elongatus BP-1] Length = 358 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/144 (29%), Positives = 72/144 (50%), Gaps = 13/144 (9%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 ++ + IV+LG GKS+L NAL + + V I GTT+ T+ + +V ++DT G Sbjct: 44 QSAWHIVVLGQVGRGKSALLNALYGEAIFPVGAIHGTTQWPRTVRWHCQDQIVDLTDTPG 103 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLK-------EINSKKEISFPKNIDFIFIGTKS 329 + D++ + T+ +E ADL+L + E ++ + + I I TK+ Sbjct: 104 L---DEVAGSDRETMTWSVLETADLVLFVTQDSLTPVECQARDRLHTLR-IPHKLILTKA 159 Query: 330 DLYSTYTEEYDHLISSFTGEGLEE 353 DLY E +SS TG+G+ E Sbjct: 160 DLYPPMAEGIA--VSSTTGQGIPE 181 >gi|332527857|ref|ZP_08403894.1| GTP-binding protein Der [Rubrivivax benzoatilyticus JA2] gi|332112434|gb|EGJ12227.1| GTP-binding protein Der [Rubrivivax benzoatilyticus JA2] Length = 447 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/88 (31%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ + G N GKS+L NA ++ + D PGTTRD + + L+ EG ++ DTAG+R Sbjct: 182 RLAVAGRPNVGKSTLINAWLGEERLVAFDQPGTTRDAIKVSLEREGRRFELIDTAGLRRK 241 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +EK + +T + +A++++L+ Sbjct: 242 GKVFEAIEKFSVVKTLQAIADANVVVLM 269 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 1/90 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 I ++G N GKS+LFN + K AIV D G TRD D L G + DT G E Sbjct: 5 IALVGRPNVGKSTLFNRITKSRDAIVADFAGLTRDRHYGDARLGGREFIVVDTGGFEPEK 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310 V E K+T V AD+++ + ++ + Sbjct: 65 PSGVVAEMAKQTRQAVAEADVVVFVADLRA 94 >gi|297181616|gb|ADI17800.1| predicted GTPases [uncultured Sphingobacteriales bacterium HF0130_33B19] Length = 434 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/86 (38%), Positives = 50/86 (58%), Gaps = 3/86 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K I+G N GKSS+ N L K+ IVTDI GTTRD L I G+ + DTAG+R+ Sbjct: 176 KFAIIGRPNVGKSSIINTLIGKEQNIVTDIAGTTRDSLNIRYTQFGFDFSLVDTAGVRKK 235 Query: 281 DDI---VEKEGIKRTFLEVENADLIL 303 ++ +E + R+ +E++D+ + Sbjct: 236 KNVHENLEFYSVMRSIRAIEHSDVCI 261 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 1/90 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 + I+G N GKS++FN + AI ++ G TRD + G + DT G I+ + Sbjct: 5 VAIVGRPNVGKSTIFNRFTESRQAITDEVSGVTRDRHYGKAEWNGREFSVIDTGGYIKGS 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310 DD+ E E K+ L +E A++IL L ++ + Sbjct: 65 DDVFEVEIRKQVELAIEEANVILFLVDVKA 94 >gi|42560947|ref|NP_975398.1| GTP-binding protein EngA [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|81829393|sp|Q6MTJ6|DER_MYCMS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|42492444|emb|CAE77040.1| conserved GTPase of unknown function [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|301321230|gb|ADK69873.1| ribosome-associated GTPase EngA [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 435 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/98 (37%), Positives = 56/98 (57%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI I+G N GKSSL N+L ++ IV++I GTT D + I + DTAGIR+ Sbjct: 176 KIAIIGRPNVGKSSLVNSLVNENRMIVSEIEGTTLDAVDISFSYNKNKYTVIDTAGIRKK 235 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + VEK R+ + N+D++LL+ I++ K I+ Sbjct: 236 SKLGQTVEKYSYLRSLSAITNSDIVLLM--IDATKPIT 271 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 45/84 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKSSLFN + K+ +IV + PG TRD + + + + DT GI Sbjct: 6 VAIIGRPNVGKSSLFNRIIKEKKSIVDNKPGVTRDRIYSNAEWLTREFILVDTGGISIDQ 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + E +T + +E AD+I+ + Sbjct: 66 QLFSNEIQIQTQIAIEQADVIIFV 89 >gi|322381805|ref|ZP_08055759.1| EngA-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154193|gb|EFX46515.1| EngA-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 443 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ ++G N GKSSL NA+ ++ IV+D GTTRD + + +G I DTAG+R+ Sbjct: 181 RVALIGRPNVGKSSLVNAILGEERVIVSDQAGTTRDAIDTPFEKDGQKYVIIDTAGMRKR 240 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + EK + R +E AD++L++ Sbjct: 241 GKVYENTEKYSVMRALKAIERADVVLVV 268 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 1/90 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 I I+G N GKS++FN + +AIV D PG TRD L + I DT GI + Sbjct: 9 IAIVGRPNVGKSTIFNKIIGDRLAIVEDRPGVTRDRLYGIGEWMNREFSIIDTGGIEIDG 68 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310 +D + K + L +E +D+I+ + + S Sbjct: 69 EDHIMKSVKVQAELAIEESDVIIFMVDAKS 98 >gi|86134521|ref|ZP_01053103.1| GTP-binding protein EngA [Polaribacter sp. MED152] gi|85821384|gb|EAQ42531.1| GTP-binding protein EngA [Polaribacter sp. MED152] Length = 436 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G NAGKSS NAL +D IVT+I GTTRD + + G+ + DTAGIR+ Sbjct: 178 RFAVVGRPNAGKSSFINALIGEDRNIVTNIAGTTRDSIDTKYNRFGFDFNLVDTAGIRKK 237 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E + R +E +D+I+L+ Sbjct: 238 SRVKEDLEFYSVMRAVRSIEYSDVIILV 265 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 1/88 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 I I+G N GKS+LFN L ++ AIV + G TRD D G + DT G + Sbjct: 5 IAIVGRPNVGKSTLFNRLVQRREAIVDSVSGVTRDRHYGKSDWNGKEFSVIDTGGYAIGS 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308 DDI E+E K+ L ++ ADLI+ + ++ Sbjct: 65 DDIFEEEIRKQVKLAIDEADLIVFVVDV 92 >gi|94970562|ref|YP_592610.1| GTP-binding protein Era [Candidatus Koribacter versatilis Ellin345] gi|94552612|gb|ABF42536.1| GTP-binding protein Era [Candidatus Koribacter versatilis Ellin345] Length = 324 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/99 (34%), Positives = 59/99 (59%), Gaps = 4/99 (4%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT--IDLDLEGYLVKISDT 274 R+G+ + I+G NAGKS+L NAL + +AIVT P TTR+ + + + +G +V + DT Sbjct: 4 RSGF-VSIIGRPNAGKSTLLNALVGEKIAIVTHKPQTTRNRIQGIVTVPKKGQIV-LVDT 61 Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313 G+ + D + K ++ + +E DL+L + ++ K E Sbjct: 62 PGVHKPDKTLNKRMMQEVYDALEGCDLLLYIHDVTHKFE 100 >gi|329120372|ref|ZP_08249039.1| ribosome-associated GTPase EngA [Neisseria bacilliformis ATCC BAA-1200] gi|327462327|gb|EGF08653.1| ribosome-associated GTPase EngA [Neisseria bacilliformis ATCC BAA-1200] Length = 490 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/96 (34%), Positives = 59/96 (61%), Gaps = 5/96 (5%) Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---E 279 ++G N GKS+L NA+ ++ I D+ GTTRD + ID + EG I DTAG+R + Sbjct: 179 AVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSIHIDFEREGKPFTIIDTAGVRRRGK 238 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D+ VEK + + VE +++ +L+ ++++++I+ Sbjct: 239 VDEAVEKFSVIKAMQAVEASNVAVLV--LDAQQDIA 272 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280 I ++G N GKS+LFN L + A+V D+PG TRD L + DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSKDALVHDLPGLTRDRHYGHGRLGSKPYLVIDTGGFEPVV 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 D + E K+T V+ AD ++ L Sbjct: 65 DSGILHEMAKQTLQAVDEADAVVFL 89 >gi|255321133|ref|ZP_05362299.1| ribosome-associated GTPase EngA [Acinetobacter radioresistens SK82] gi|262380178|ref|ZP_06073333.1| ribosome-associated GTPase EngA [Acinetobacter radioresistens SH164] gi|255301687|gb|EET80938.1| ribosome-associated GTPase EngA [Acinetobacter radioresistens SK82] gi|262298372|gb|EEY86286.1| ribosome-associated GTPase EngA [Acinetobacter radioresistens SH164] Length = 469 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/91 (31%), Positives = 55/91 (60%), Gaps = 3/91 (3%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 G ++ I+G N GKS+L N L ++ + D PGTTRD + I + +G + DTAG+ Sbjct: 175 TGLRLAIIGRPNVGKSTLVNRLLGEERVVAYDEPGTTRDSVYIPFERDGRQYTLIDTAGV 234 Query: 278 R---ETDDIVEKEGIKRTFLEVENADLILLL 305 R + D+++EK + +T +++A +++++ Sbjct: 235 RRKGKVDEMIEKFSVVKTLQAMKDAHVVVVV 265 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 44/84 (52%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN + K A+V D G TRD D + + DT GI E++ Sbjct: 5 IALIGRPNVGKSTLFNQITKSRDALVADFAGLTRDRKYGDAVYQNKSFIVVDTGGIGESE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ +++ + ADLI+ + Sbjct: 65 QGIDSYMAEQSKTAIHEADLIIFV 88 >gi|308389025|gb|ADO31345.1| putative GTP-binding protein EngA [Neisseria meningitidis alpha710] Length = 485 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/96 (34%), Positives = 59/96 (61%), Gaps = 5/96 (5%) Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---E 279 ++G N GKS+L NA+ ++ I D+ GTTRD + ID + +G I DTAG+R + Sbjct: 179 AVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSIHIDFERKGKPFTIIDTAGVRRRGK 238 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D+ VEK + + VE A++ +L+ ++++++I+ Sbjct: 239 VDEAVEKFSVIKAMQAVEAANVAVLV--LDAQQDIA 272 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280 I ++G N GKS+LFN L + A+V D+PG TRD + + DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGFEPVV 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 D + E K+T V+ AD ++ L Sbjct: 65 DSGILHEMAKQTLQAVDEADAVVFL 89 >gi|241205814|ref|YP_002976910.1| GTP-binding protein EngA [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859704|gb|ACS57371.1| small GTP-binding protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 474 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/92 (38%), Positives = 50/92 (54%), Gaps = 1/92 (1%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 + + I+G N GKS+LFN L K +A+V D PG TRD D L G I DTAG+ E Sbjct: 3 FTVAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGDARLMGLTFTIIDTAGLEE 62 Query: 280 TD-DIVEKEGIKRTFLEVENADLILLLKEINS 310 D + ++ +T ++ ADL L + + S Sbjct: 63 ADAESLQGRMRAQTEAAIDEADLSLFVVDAKS 94 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 39/66 (59%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G NAGKS+L N +D + G TRD ++++ D G +K+ DTAG+R Sbjct: 205 RVAIVGRPNAGKSTLINRFLGEDRLLTGPEAGITRDSISVEWDWRGRTIKMFDTAGMRRK 264 Query: 281 DDIVEK 286 ++EK Sbjct: 265 ARVIEK 270 >gi|162454229|ref|YP_001616596.1| GTP-binding protein [Sorangium cellulosum 'So ce 56'] gi|161164811|emb|CAN96116.1| GTP-binding protein [Sorangium cellulosum 'So ce 56'] Length = 598 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/85 (40%), Positives = 46/85 (54%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L K VAIV D PG TRD D+ G + DT G Sbjct: 161 VALVGRPNTGKSTLFNRLVGKRVAIVHDEPGVTRDRHYGDVTSRGRRFTLVDTGGFDPES 220 Query: 282 DIVEKEGIKRTF-LEVENADLILLL 305 D ++GIKR L + AD+I+ + Sbjct: 221 DDPMRQGIKRQIDLAIAEADVIVCV 245 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/91 (37%), Positives = 50/91 (54%), Gaps = 6/91 (6%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 +I I+G NAGKSSL N +A ++ +V PGTTRD + + +G + DTAGIR Sbjct: 335 RIAIIGRPNAGKSSLVNRIAGEERMLVDATPGTTRDPIDTLAERDGKRFLLIDTAGIRRK 394 Query: 279 ----ETDDIVEKEGIKRTFLEVENADLILLL 305 + D VE + +E A+++LLL Sbjct: 395 SKVAKEDSAVEAVSVIHAIRAMERAEVVLLL 425 >gi|153005016|ref|YP_001379341.1| GTP-binding protein EngA [Anaeromyxobacter sp. Fw109-5] gi|152028589|gb|ABS26357.1| small GTP-binding protein [Anaeromyxobacter sp. Fw109-5] Length = 471 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + ++G N GKS+LFN LA + AIV D+PG TRD D +G + + DT G E+ Sbjct: 13 VALVGRPNVGKSTLFNRLAGRRAAIVQDVPGVTRDRNYADFSFDGRALSVVDTGGFEPES 72 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 D + + ++ L VE A ++L+ Sbjct: 73 RDRLMSQVRQQAQLAVEEAAAVVLV 97 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 50/88 (56%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKS+ N+L + +V+D+PGTTRD + ++ G ++DTAGIR Sbjct: 202 RLAIVGRPNVGKSTFVNSLLGHERFVVSDVPGTTRDAIDSLVEQRGQRFVVTDTAGIRRK 261 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 I VE + R+ ++ A+++ L Sbjct: 262 SAIAQAVEAYSVVRSMKAIDRAEVVACL 289 >gi|315926702|gb|EFV06081.1| small GTP-binding domain protein [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 460 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 54/85 (63%), Gaps = 3/85 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I+++G N GKSSLFN +A++ +AI +DI GTTRD + + + D+ G+ E+D Sbjct: 4 IILIGKPNVGKSSLFNRMARQRIAITSDISGTTRDTNKTQIHIHSKKAMLIDSGGLDESD 63 Query: 282 DIVEKEGIKRTFLEV-ENADLILLL 305 ++ + +K+ L+V + +D+IL L Sbjct: 64 ELF--KNVKKNTLKVAKESDIILYL 86 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/157 (29%), Positives = 80/157 (50%), Gaps = 27/157 (17%) Query: 154 LSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGK-- 211 L LY +W++K H F+ D EEE++++F H +GK Sbjct: 149 LDELY-EWLEKFLH-EEFLIPD----EEENLEDFLE----------------HYEEGKEF 186 Query: 212 -LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270 E+ +N ++ I+G N GKSSL N L K++ ++V+ I GTT D + + + +++ Sbjct: 187 QFKEVDQNHIRVGIVGRVNVGKSSLLNTLVKQERSVVSSIAGTTIDPVNESIVYKDKVIE 246 Query: 271 ISDTAGIRETDDI--VEKEGIKRTFLEVENADLILLL 305 DTAGIR+ I +E+ + RT + ++ + LL+ Sbjct: 247 FVDTAGIRKRGKIQGLERFALNRTEKILSHSQIALLV 283 >gi|212638926|ref|YP_002315446.1| GTP-binding protein EngA [Anoxybacillus flavithermus WK1] gi|212560406|gb|ACJ33461.1| Predicted GTPase [Anoxybacillus flavithermus WK1] Length = 449 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 65/119 (54%), Gaps = 5/119 (4%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L + + +H + + E + K ++G N GKSSL NA+ ++ IV+DI GTTRD + Sbjct: 168 LLDAVVAHFPKRETKEYDADVIKFCLIGRPNVGKSSLVNAILGEERVIVSDIAGTTRDAI 227 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEI 314 +G I DTAG+R+ + EK + R +E +D++L++ IN+++ I Sbjct: 228 DTTFKRDGQEYVIIDTAGMRKRGKVYESTEKYSVLRALKAIERSDVVLVV--INAEEGI 284 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/84 (28%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN + + ++IV D+PG TRD + + + DT GI D Sbjct: 19 VAIVGRPNVGKSTIFNRIVGERISIVEDVPGVTRDRIYSSAEWLNTTFNMIDTGGIDIGD 78 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + + ++ + ++ AD+I+ + Sbjct: 79 EPLLTQIRQQAEIAIDEADVIIFM 102 >gi|193215037|ref|YP_001996236.1| GTP-binding protein EngA [Chloroherpeton thalassium ATCC 35110] gi|238692727|sp|B3QZ96|DER_CHLT3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|193088514|gb|ACF13789.1| small GTP-binding protein [Chloroherpeton thalassium ATCC 35110] Length = 435 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/156 (25%), Positives = 74/156 (47%), Gaps = 19/156 (12%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN + K VAIV D+PG TRD + + G + DT G T Sbjct: 5 VAIVGRPNVGKSTLFNRILNKRVAIVDDVPGVTRDRNFSEAEWCGKQFSLIDTGGYSRTG 64 Query: 282 DIVEKEGIKRTFLEVENADLIL------------------LLKEINSKKEISFPKN-IDF 322 D ++++ + ++ A++I+ LL++ S+K + N +D Sbjct: 65 DTFSAAVLEQSLIALQEANIIILVVDLRTGITDIDLEITELLRKQASEKTVFLAVNKVDN 124 Query: 323 IFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKI 358 + + + L+ + +S+ G G+ EL++ + Sbjct: 125 NLMESDAQLFRKLGLSEPYFVSALDGRGVAELLDAV 160 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 K+ ++G N GKSS NA+ ++ IVTDIPGTTRD + G + DTAG+R Sbjct: 177 KLTVIGRPNVGKSSFVNAILGQNRQIVTDIPGTTRDAVDSRFKRNGQDFLLIDTAGLRRK 236 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305 + DD +E RT +E D+ ++L Sbjct: 237 AKVDDNIELFSALRTEKAIERCDVAIIL 264 >gi|169333658|ref|ZP_02860851.1| hypothetical protein ANASTE_00042 [Anaerofustis stercorihominis DSM 17244] gi|169259652|gb|EDS73618.1| hypothetical protein ANASTE_00042 [Anaerofustis stercorihominis DSM 17244] Length = 394 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 64/195 (32%), Positives = 100/195 (51%), Gaps = 30/195 (15%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTAGIRE 279 I I G NAGKSS+ NA+ +++AIV+D+ GTT D ++ ++L G +V I DT G+ + Sbjct: 14 IGIFGRRNAGKSSIINAITNQNLAIVSDVKGTTTDPVSKAMELFPLGPVV-IIDTPGLDD 72 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKE-----INSKKE---ISFPKNIDFIFIGTKSDL 331 + EK I++ + + D+ LL+ + + KE + KNI +I + KSD+ Sbjct: 73 VGSLGEKR-IEKAYQVLNKTDIALLILDAEYGLTDVDKELLKLIKEKNIPYIILMNKSDI 131 Query: 332 YSTYTEEYDHL-ISSFTGEG---LEELINK---------IKSILSNKFKKLPFSIPSHK- 377 S + + + +S+ TGE L+ELI K I S L NK K+ IP K Sbjct: 132 LSDDKKNNEFIYVSTKTGENIKELKELIAKKAPKGNEKVIVSDLINKGDKVILVIPIDKA 191 Query: 378 ----RHLYHLSQTVR 388 R + QT+R Sbjct: 192 APKGRLILPQQQTIR 206 >gi|122702515|emb|CAL88448.1| GTPase [Helicobacter pylori] Length = 170 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/82 (41%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ K+ + +DLIL Sbjct: 69 ALLSKKIKAINLKAAQMSDLIL 90 >gi|83310443|ref|YP_420707.1| GTP-binding protein EngA [Magnetospirillum magneticum AMB-1] gi|123542640|sp|Q2W7M7|DER_MAGSA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|82945284|dbj|BAE50148.1| GTP-binding protein engA [Magnetospirillum magneticum AMB-1] Length = 464 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/97 (38%), Positives = 54/97 (55%), Gaps = 3/97 (3%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR- 278 + + I+G N GKS+LFN L K +AIV D+PG TRD L G ++ DTAG Sbjct: 3 FTVAIIGRPNVGKSTLFNRLVGKRLAIVHDLPGVTRDRREGRASLLGMEFQVVDTAGFED 62 Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + D +E +T + V AD+ LLL I+S+ ++ Sbjct: 63 DGGDSIEARMRHQTDMAVAEADVALLL--IDSRAGVT 97 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/180 (21%), Positives = 81/180 (45%), Gaps = 29/180 (16%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+L N L +D + G TRD + ++ + G +K+ DTAG+R+ Sbjct: 197 MAIVGRPNVGKSTLGNQLLGQDRLLTGPEAGLTRDAIAVEWEHRGRRMKLVDTAGLRKKA 256 Query: 282 ---DIVEKEGIKRTFLEVENADLILLLKE---INSKKEISFPKNI-----DFIFIGTKSD 330 D +EK + T + +++++L+ + I K++++ + + + K D Sbjct: 257 QIYDAIEKLSVGNTIETIRMSEVVVLVMDAAAILDKQDLTIARLVVEEGRALVLAINKWD 316 Query: 331 LYSTYTEEYDHL------------------ISSFTGEGLEELINKIKSILSNKFKKLPFS 372 + L +S+ TG G+E+L++ + + +++P + Sbjct: 317 VVDDPQTALKRLKDRLETSLPQARGVATVTLSALTGRGIEKLMDAVLDTWTKWNRRIPTA 376 >gi|163786085|ref|ZP_02180533.1| GTP-binding protein EngA [Flavobacteriales bacterium ALC-1] gi|159877945|gb|EDP72001.1| GTP-binding protein EngA [Flavobacteriales bacterium ALC-1] Length = 434 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G NAGKSS NAL ++ IVTDI GTTRD + + G+ + DTAGIR Sbjct: 176 RFAVVGRPNAGKSSFINALIGEERYIVTDIAGTTRDSIDTKYNRFGFEFNLVDTAGIRRK 235 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E + R+ +E+ D+ LL+ Sbjct: 236 SKVKEDLEFYSVMRSVRAIEHCDVCLLV 263 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 1/90 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 + ++G N GKS+ FN L K+ AIV + G TRD D G + DT G + + Sbjct: 5 VAVVGRPNVGKSTFFNRLIKRREAIVDAVSGVTRDRHYGKTDWNGKEFSLIDTGGYVVGS 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310 DDI E E K+ L ++ AD I+ + ++ + Sbjct: 65 DDIFEAEIDKQVELAIDEADAIIFMVDVET 94 >gi|122702181|emb|CAL88281.1| GTPase [Helicobacter pylori] Length = 170 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/82 (41%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN L+++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLSRERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 VLLSKEIKALNLKAAQMSDLIL 90 >gi|46581596|ref|YP_012404.1| GTP-binding protein EngA [Desulfovibrio vulgaris str. Hildenborough] gi|81698970|sp|Q725L9|DER_DESVH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|46451019|gb|AAS97664.1| GTP-binding protein EngA [Desulfovibrio vulgaris str. Hildenborough] gi|311235239|gb|ADP88093.1| ribosome-associated GTPase EngA [Desulfovibrio vulgaris RCH1] Length = 491 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ +LG NAGKSSL NAL + IV+D+ GTTRD + + + +G DTAG+R Sbjct: 228 RLCMLGRPNAGKSSLVNALTGTNRMIVSDVAGTTRDSVDVAFEKDGLSYTFVDTAGVRRR 287 Query: 281 D---DIVEKEGIKRTFLEVENADLILLL 305 D VE+ + + A + LL+ Sbjct: 288 SRITDTVERYSVNSSLKSTTKAHVTLLV 315 Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust. Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 16/74 (21%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL----------------TIDLDL 264 KI ++G N GKS+LFN L + + AI D+PG TRD + T + L Sbjct: 4 KIALVGRPNVGKSTLFNRLIRSNRAITHDMPGVTRDRMEGIVRGRNKRPFGIIDTGGITL 63 Query: 265 EGYLVKISDTAGIR 278 +G+ AGIR Sbjct: 64 DGHAAVAEGPAGIR 77 >gi|302345898|ref|YP_003814251.1| ribosome-associated GTPase EngA [Prevotella melaninogenica ATCC 25845] gi|302149910|gb|ADK96172.1| ribosome-associated GTPase EngA [Prevotella melaninogenica ATCC 25845] Length = 437 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G NAGKSS+ NA +D IVT+I GTTRD + G+ + DTAGIR Sbjct: 177 RFAVVGRPNAGKSSIINAFIGEDRNIVTEIAGTTRDSIYTRYTKFGFDFYLVDTAGIRRK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + + +E + R+ +EN+D+ +L+ Sbjct: 237 NKVSEDLEFYSVMRSIRSIENSDVCILM 264 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/85 (40%), Positives = 46/85 (54%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 + I+G N GKS+LFN L + AIV+D GTTRD G I DT G + ++ Sbjct: 5 VAIVGRPNVGKSTLFNRLTQTRHAIVSDTAGTTRDRQYGKCQWNGREFSIVDTGGWVVKS 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 DDI E K+ + E ADL+L + Sbjct: 65 DDIFEDAIRKQVLVATEEADLVLFV 89 >gi|227484953|ref|ZP_03915269.1| GTP-binding protein [Anaerococcus lactolyticus ATCC 51172] gi|227237108|gb|EEI87123.1| GTP-binding protein [Anaerococcus lactolyticus ATCC 51172] Length = 439 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/88 (40%), Positives = 50/88 (56%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I I+G NAGKSSL N L +D IVTDI GTTRD + + + DTAG+R Sbjct: 177 RIAIIGKPNAGKSSLVNLLLNEDRMIVTDIAGTTRDAVDSYWTYNDHNYVLIDTAGLRRK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E +RTF V++A++ L L Sbjct: 237 SKVKENIEYYANQRTFDAVDSAEICLFL 264 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 81/165 (49%), Gaps = 30/165 (18%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + ++G +N GKS+LFN L K +I D+ G TRD + + + + DT GI + Sbjct: 6 VTLVGRTNVGKSTLFNRLVGKRKSITEDVSGVTRDRIVDKAEWQNNEFLLVDTGGIDISS 65 Query: 281 DDIVEKE---GIKRTFLEVENADLILLLKEINSKKEISFPKNIDF-----------IFIG 326 D++ E +++ LE +LIL + ++ K+ ++ P ++D I + Sbjct: 66 KDMMNVEIRGQVEKALLE---TNLILFV--VDGKEGVN-PHDVDIANEIRKYNKPVIIVA 119 Query: 327 TK-------SDLYSTYTEEYDHL--ISSFTGEGLEELINKIKSIL 362 K DLY Y+ +D+L IS+ +GL +L++ I S + Sbjct: 120 NKVDNMQVPDDLYDFYSFGFDNLVMISAEQAKGLGDLLDAIISYI 164 >gi|227498485|ref|ZP_03928631.1| conserved hypothetical protein [Acidaminococcus sp. D21] gi|226903943|gb|EEH89861.1| conserved hypothetical protein [Acidaminococcus sp. D21] Length = 405 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 50/154 (32%), Positives = 81/154 (52%), Gaps = 15/154 (9%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAGIRET 280 I + G NAGKSSL NAL +D++IV+D GTT D ++ ++ L V I+DT G+ + Sbjct: 16 IGLFGCRNAGKSSLINALTGQDLSIVSDFKGTTTDPVSKAMEILPLGPVLITDTPGLDDE 75 Query: 281 DDIVEKEGIKRTFLEVENADLILL-------LKEINSKKEISFP-KNIDFIFIGTKSDLY 332 + EK +K+ + + D+ LL L E + + F + + ++ I K D+Y Sbjct: 76 GALGEKR-VKKARFVLRSTDIALLVVDAALGLSEADQRLLKEFKERKVPYLLIVNKIDIY 134 Query: 333 ST---YTEEYDHL--ISSFTGEGLEELINKIKSI 361 S E DHL +S+ T EG+ EL ++ + Sbjct: 135 SAPLLPQAEKDHLLFVSAQTHEGITELKERLSRM 168 >gi|197302999|ref|ZP_03168047.1| hypothetical protein RUMLAC_01725 [Ruminococcus lactaris ATCC 29176] gi|197297854|gb|EDY32406.1| hypothetical protein RUMLAC_01725 [Ruminococcus lactaris ATCC 29176] Length = 442 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSS+ N L ++ IV+DI GTTRD + ++ G DTAG+R Sbjct: 179 RVAIVGKPNVGKSSIINRLLGENRVIVSDIAGTTRDAIDTEIVHNGKEYVFIDTAGLRRK 238 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + I +E+ I RT VE AD++L++ Sbjct: 239 NKIKEELERYSIIRTVSAVERADVVLMV 266 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 53/88 (60%), Gaps = 1/88 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFN LA + ++IV D PG TRD + D+D + DT GI ++ Sbjct: 6 VAIVGRPNVGKSTLFNVLAGEMISIVKDTPGVTRDRIYADVDWLDREFTLIDTGGIEPDS 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308 DI+ + ++ + ++ AD+I+ + ++ Sbjct: 66 RDIILSQMREQAQIAIDTADVIIFITDV 93 >gi|153951852|ref|YP_001398571.1| GTP-binding protein EngA [Campylobacter jejuni subsp. doylei 269.97] gi|166224323|sp|A7H4Z1|DER_CAMJD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|152939298|gb|ABS44039.1| GTPase family protein [Campylobacter jejuni subsp. doylei 269.97] Length = 460 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 55/85 (64%), Gaps = 3/85 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I+++G N GKSSLFN +A++ +AI +DI GTTRD ++ + + D+ G+ E+D Sbjct: 4 IILIGKPNVGKSSLFNKMARQRIAITSDISGTTRDANKTEIYIHSKKAMLIDSGGLDESD 63 Query: 282 DIVEKEGIKRTFLEV-ENADLILLL 305 ++ + +K+ L+V + +D+IL L Sbjct: 64 ELF--KNVKKNTLKVAKESDIILYL 86 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/144 (30%), Positives = 75/144 (52%), Gaps = 27/144 (18%) Query: 154 LSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGK-- 211 L LY +W++K H + F+ D EEE++++F + +GK Sbjct: 149 LDELY-EWLEKFLH-QEFLIPD----EEENLEDFLE----------------YYEEGKEF 186 Query: 212 -LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270 E+ +N ++ I+G N GKSSL NAL K++ ++V+ I GTT D + + + +++ Sbjct: 187 QFKEVDQNHIRVGIVGRVNVGKSSLLNALVKQERSVVSSIAGTTIDPVNESIVHKDKVIE 246 Query: 271 ISDTAGIRETDDI--VEKEGIKRT 292 DTAGIR+ I +E+ + RT Sbjct: 247 FVDTAGIRKRGKIQGLERFALNRT 270 >gi|57237441|ref|YP_178454.1| GTP-binding protein EngA [Campylobacter jejuni RM1221] gi|86149131|ref|ZP_01067363.1| GTPase family protein [Campylobacter jejuni subsp. jejuni CF93-6] gi|88597436|ref|ZP_01100671.1| GTPase family protein [Campylobacter jejuni subsp. jejuni 84-25] gi|218562044|ref|YP_002343823.1| GTP-binding protein EngA [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|26006744|sp|Q9PIB6|DER_CAMJE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|81819560|sp|Q5HW81|DER_CAMJR RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|57166245|gb|AAW35024.1| GTPase family protein [Campylobacter jejuni RM1221] gi|85840489|gb|EAQ57746.1| GTPase family protein [Campylobacter jejuni subsp. jejuni CF93-6] gi|88190497|gb|EAQ94471.1| GTPase family protein [Campylobacter jejuni subsp. jejuni 84-25] gi|112359750|emb|CAL34536.1| putative GTP-binding protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284925657|gb|ADC28009.1| GTP-binding protein EngA [Campylobacter jejuni subsp. jejuni IA3902] gi|315057809|gb|ADT72138.1| GTP-binding protein EngA [Campylobacter jejuni subsp. jejuni S3] Length = 460 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 54/85 (63%), Gaps = 3/85 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I+++G N GKSSLFN +A++ +AI +DI GTTRD + + + D+ G+ E+D Sbjct: 4 IILIGKPNVGKSSLFNRMARQRIAITSDISGTTRDTNKTQIHIHSKKAMLIDSGGLDESD 63 Query: 282 DIVEKEGIKRTFLEV-ENADLILLL 305 ++ + +K+ L+V + +D+IL L Sbjct: 64 ELF--KNVKKNTLKVAKESDIILYL 86 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 46/157 (29%), Positives = 81/157 (51%), Gaps = 27/157 (17%) Query: 154 LSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGK-- 211 L LY +W++K H F+ D EEE++++F + +GK Sbjct: 149 LDELY-EWLEKFLH-EEFLIPD----EEENLEDFLE----------------YYEEGKEF 186 Query: 212 -LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270 E+ +N ++ I+G N GKSSL NAL K++ ++V+ I GTT D + + + +++ Sbjct: 187 QFKEVDQNHIRVGIVGRVNVGKSSLLNALVKQERSVVSSIAGTTIDPVNESVVHKDKVIE 246 Query: 271 ISDTAGIRETDDI--VEKEGIKRTFLEVENADLILLL 305 DTAGIR+ I +E+ + RT + ++ + LL+ Sbjct: 247 FVDTAGIRKRGKIQGLERFALNRTEKILSHSQIALLV 283 >gi|304315770|ref|YP_003850915.1| small GTP-binding protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777272|gb|ADL67831.1| small GTP-binding protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 411 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 60/173 (34%), Positives = 87/173 (50%), Gaps = 35/173 (20%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAGIRET 280 I I G NAGKSS+ NAL +++AIV+D+ GTT D + ++ L V I DTAG+ +T Sbjct: 12 IAIFGRRNAGKSSIINALTNQNIAIVSDVAGTTTDPVQKAMEILPIGPVVIIDTAGLDDT 71 Query: 281 DDIVEKEGIKRTFLEVENADLILLL-----------KEINSK-KEISFPKNIDFIFIGTK 328 ++ E +K+T+ + DL LL+ +EI K KE KNI + + K Sbjct: 72 GELGELR-VKKTYEVLNRTDLALLIIDGTIGPSEFEEEILKKIKE----KNIPVVGVVNK 126 Query: 329 SDL----YSTYTEEYDHL------ISSFTGEGLEELINKIKSILSNKFKKLPF 371 DL +S TE L S+ +G G+EEL +I KK P+ Sbjct: 127 VDLVDFHFSKKTEWEKRLKLELVETSANSGYGIEELKRQI-------IKKAPY 172 >gi|145299527|ref|YP_001142368.1| GTP-binding protein EngA [Aeromonas salmonicida subsp. salmonicida A449] gi|166224302|sp|A4SNZ8|DER_AERS4 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|142852299|gb|ABO90620.1| GTP-binding protein EngA [Aeromonas salmonicida subsp. salmonicida A449] Length = 499 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/98 (34%), Positives = 60/98 (61%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 K I+G N GKS+L N + +D IV D+PGTTRD + + ++ + + DTAG+R Sbjct: 214 KFAIVGRPNVGKSTLTNRMLGEDRVIVYDMPGTTRDSVYVPMERDEQKYVVIDTAGVRRR 273 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + + VEK + +T +E+A++ LL+ I++++ I+ Sbjct: 274 GKVHETVEKFSVIKTLKAIEDANVCLLV--IDAQETIT 309 Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD L + DT GI T+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGELEFIVVDTGGIDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + +E + +++ L +E AD++L + Sbjct: 65 EGIELKMAEQSLLAIEEADVVLFM 88 >gi|319790369|ref|YP_004152002.1| GTP-binding proten HflX [Thermovibrio ammonificans HB-1] gi|317114871|gb|ADU97361.1| GTP-binding proten HflX [Thermovibrio ammonificans HB-1] Length = 366 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 64/182 (35%), Positives = 90/182 (49%), Gaps = 39/182 (21%) Query: 217 RNGYKIV-ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 R G K V ++G++N GKS+L AL +K+V V D+P T DV T L L G V ISDT Sbjct: 185 RRGQKTVAVVGYTNVGKSTLVRALTRKEV-FVKDMPFATLDVRTGSLYLNGETVLISDTV 243 Query: 276 GIRET--DDIVEKEGIKRTFLEVENADLILLL---------KEINSKKEI-----SFPKN 319 G + ++V + T EV+ ADL+L++ +E+NS KE+ S+ K Sbjct: 244 GFIKNLPHELV--ASFRATLSEVKEADLLLVVFDASSETAEEELNSVKEVLKRLRSWDK- 300 Query: 320 IDFIFIGTKSD-LYST--------------YTEEYDH--LISSFTGEGLEELINKIKSIL 362 IF+ K+D L S+ EE LIS+ G GLEEL I+ L Sbjct: 301 -PKIFVANKTDKLVSSPQELEELKGELLLKIPEENPKLVLISAVKGWGLEELKRAIEEAL 359 Query: 363 SN 364 + Sbjct: 360 KS 361 >gi|190571288|ref|YP_001975646.1| GTP-binding protein [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018685|ref|ZP_03334493.1| GTP-binding protein [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357560|emb|CAQ54999.1| GTP-binding protein [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995636|gb|EEB56276.1| GTP-binding protein [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 441 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 53/88 (60%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I I+G N GKS+ N+L ++ IV+ PGTTRD + I D G L+ + DTAGIR Sbjct: 177 RIAIIGRPNVGKSTFLNSLLAENRLIVSSEPGTTRDSVDISYDHNGKLITLIDTAGIRRK 236 Query: 281 DDIV---EKEGIKRTFLEVENADLILLL 305 ++V E ++++ ++ + +++L+ Sbjct: 237 ANVVDNLESRFVEKSIESIKRSHVVILM 264 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 23/36 (63%), Positives = 28/36 (77%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 KIVI+G NAGKS+LFN L + A+V+DIPG TRD Sbjct: 3 KIVIIGLPNAGKSTLFNRLVGRKAAVVSDIPGVTRD 38 >gi|88810613|ref|ZP_01125870.1| GTP-binding protein EngA [Nitrococcus mobilis Nb-231] gi|88792243|gb|EAR23353.1| GTP-binding protein EngA [Nitrococcus mobilis Nb-231] Length = 476 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKS+L N L ++ +V D PGTTRD + I + +G+ + DTAG+R Sbjct: 184 RVAIVGRPNVGKSTLINRLLGEERVLVHDQPGTTRDSIFIPFERDGFAYTLIDTAGMRRR 243 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + VEK +T V A +++LL Sbjct: 244 SRVYEAVEKFSAIKTLQAVTAAQVVILL 271 Score = 40.0 bits (92), Expect = 0.75, Method: Compositional matrix adjust. Identities = 18/35 (51%), Positives = 23/35 (65%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 IV++G N GKS+LFN L + A+V D P TRD Sbjct: 5 IVLVGRPNVGKSTLFNCLTRSRDALVADFPELTRD 39 >gi|315651881|ref|ZP_07904884.1| ribosome-associated GTPase EngA [Eubacterium saburreum DSM 3986] gi|315485883|gb|EFU76262.1| ribosome-associated GTPase EngA [Eubacterium saburreum DSM 3986] Length = 443 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/91 (36%), Positives = 56/91 (61%), Gaps = 7/91 (7%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID---LDLEGYLVKISDTAGIR 278 + I+G N GKS+LFNA+A + ++IV D PG TRD + D LD+ L+ DT GI Sbjct: 6 VAIIGRPNVGKSTLFNAIAGEPISIVKDTPGVTRDRIYADCTWLDMNFTLI---DTGGIE 62 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEI 308 E+ D++ + ++ + +E AD+I+ + ++ Sbjct: 63 PESSDVILSQMREQAEIAIETADVIVFITDV 93 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 35/89 (39%), Positives = 55/89 (61%), Gaps = 5/89 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRE 279 +I I+G N GKSS+ N L ++ IV+DI GTTRD + T+ ++ + + I DTAG+R Sbjct: 180 RIAIVGKPNVGKSSIINRLTGQNRVIVSDIAGTTRDAIDTVVVNNKQEYIFI-DTAGLRR 238 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLL 305 + +E+ I RT VE AD+++L+ Sbjct: 239 KSKVKEDIERYSIIRTVTAVERADVVILV 267 >gi|160872137|ref|ZP_02062269.1| GTP-binding protein EngA [Rickettsiella grylli] gi|159120936|gb|EDP46274.1| GTP-binding protein EngA [Rickettsiella grylli] Length = 455 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/103 (34%), Positives = 61/103 (59%), Gaps = 5/103 (4%) Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 I+ K+ I+G N GKS+L N + ++ IV D PGTTRD + D++ G DTA Sbjct: 194 IKPKIKVAIVGKPNVGKSTLLNRILGEERVIVFDQPGTTRDSIANDIEYRGQHYIFIDTA 253 Query: 276 GIR---ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 GIR +T + ++K + ++ +E + ++LLL I++++ IS Sbjct: 254 GIRRKSKTWEAIDKFSVIKSLQAIEASHVVLLL--IDAQEGIS 294 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 23/37 (62%), Positives = 26/37 (70%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 IV++G N GKSSLFN L K A+V DIPG TRD L Sbjct: 17 IVLVGRPNVGKSSLFNRLTKTRQALVGDIPGLTRDRL 53 >gi|281358431|ref|ZP_06244912.1| ribosome-associated GTPase EngA [Victivallis vadensis ATCC BAA-548] gi|281315054|gb|EFA99086.1| ribosome-associated GTPase EngA [Victivallis vadensis ATCC BAA-548] Length = 513 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/93 (36%), Positives = 52/93 (55%), Gaps = 7/93 (7%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE----GYLVKISDTAGI 277 I ++G N GKSSL NAL ++ +V+D+ GTTRD + +D L + DTAG+ Sbjct: 200 IAVVGRPNVGKSSLVNALLGEERVMVSDVAGTTRDAIDVDFTLRYQGGDRAAVLVDTAGL 259 Query: 278 R---ETDDIVEKEGIKRTFLEVENADLILLLKE 307 R + D +VE + R ++ ADL+L + E Sbjct: 260 RKKAKVDTVVEFFSVMRAQAAIDRADLVLFVVE 292 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 34/56 (60%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 + I+G N GKSSLFNA+ + ++IV ++PG TRD + L ++ DT G+ Sbjct: 17 VAIVGRPNVGKSSLFNAIVGRRLSIVHEMPGVTRDRVVAPLVRGKCRFQLIDTGGL 72 >gi|331002253|ref|ZP_08325772.1| GTP-binding protein engA [Lachnospiraceae oral taxon 107 str. F0167] gi|330411347|gb|EGG90763.1| GTP-binding protein engA [Lachnospiraceae oral taxon 107 str. F0167] Length = 443 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/93 (39%), Positives = 57/93 (61%), Gaps = 5/93 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRE 279 +I I+G N GKSS+ N L ++ IV+DI GTTRD + T+ ++ + V I DTAG+R Sbjct: 180 RIAIVGKPNVGKSSIINRLTGQNRVIVSDIAGTTRDAIDTVVVNNKQEYVFI-DTAGLRR 238 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEIN 309 + +E+ I RT VE AD+++L+ + N Sbjct: 239 KSKVKEDIERYSIIRTVTAVERADVVILVIDAN 271 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/91 (36%), Positives = 56/91 (61%), Gaps = 7/91 (7%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID---LDLEGYLVKISDTAGIR 278 + I+G N GKS+LFNA+A + ++IV D PG TRD + D LD+ L+ DT GI Sbjct: 6 VAIIGRPNVGKSTLFNAIAGEPISIVKDTPGVTRDRIYADCTWLDMNFTLI---DTGGIE 62 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEI 308 ++ DI+ + ++ + +E AD+I+ + ++ Sbjct: 63 PDSSDIILSQMREQAEIAIETADVIVFITDV 93 >gi|297517162|ref|ZP_06935548.1| GTP-binding protein EngA [Escherichia coli OP50] Length = 194 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/93 (35%), Positives = 59/93 (63%), Gaps = 5/93 (5%) Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---ETDD 282 G N GKS+L N + ++ +V D+PGTTRD + I ++ +G + DTAG+R + D Sbjct: 1 GRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKRGKITD 60 Query: 283 IVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 VEK + +T +E+A++++L+ I++++ IS Sbjct: 61 AVEKFSVIKTLQAIEDANVVMLV--IDAREGIS 91 >gi|241758625|ref|ZP_04756739.1| ribosome-associated GTPase EngA [Neisseria flavescens SK114] gi|241321136|gb|EER57332.1| ribosome-associated GTPase EngA [Neisseria flavescens SK114] Length = 485 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/96 (34%), Positives = 59/96 (61%), Gaps = 5/96 (5%) Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---E 279 ++G N GKS+L NA+ ++ I ++ GTTRD + ID + EG I DTAG+R + Sbjct: 179 AVIGRPNVGKSTLVNAILGEERVIAFNMAGTTRDSIHIDFEREGKPFTIIDTAGVRRRGK 238 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D+ VEK + + VE A++ +L+ ++++++I+ Sbjct: 239 VDEAVEKFSVIKAMQAVEAANVAVLV--LDAQQDIA 272 Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280 I ++G N GKS+LFN L + A+V D+PG TRD + + DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKIGSKPYLVIDTGGFEPVV 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 D + E K+T V+ AD ++ L Sbjct: 65 DSGILHEMAKQTLQAVDEADAVVFL 89 >gi|116253295|ref|YP_769133.1| GTP-binding protein EngA [Rhizobium leguminosarum bv. viciae 3841] gi|166225846|sp|Q1MDD6|DER_RHIL3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|115257943|emb|CAK09041.1| putative engA GTP-binding protein [Rhizobium leguminosarum bv. viciae 3841] Length = 473 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/92 (38%), Positives = 50/92 (54%), Gaps = 1/92 (1%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 + + I+G N GKS+LFN L K +A+V D PG TRD D L G I DTAG+ E Sbjct: 3 FTVAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGDARLMGLTFTIIDTAGLEE 62 Query: 280 TD-DIVEKEGIKRTFLEVENADLILLLKEINS 310 D + ++ +T ++ ADL L + + S Sbjct: 63 ADAESLQGRMRAQTEAAIDEADLSLFVVDAKS 94 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 39/66 (59%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G NAGKS+L N +D + G TRD ++++ D G +K+ DTAG+R Sbjct: 204 RVAIVGRPNAGKSTLINRFLGEDRLLTGPEAGITRDSISVEWDWRGRTIKMFDTAGMRRK 263 Query: 281 DDIVEK 286 ++EK Sbjct: 264 ARVIEK 269 >gi|291543008|emb|CBL16118.1| ribosome-associated GTPase EngA [Ruminococcus bromii L2-63] Length = 440 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 55/90 (61%), Gaps = 1/90 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 I ++G N GKS+LFN L + ++IV D PG TRD + +++ G I DT GI ++ Sbjct: 6 IAVVGRPNVGKSTLFNKLIGQRLSIVDDTPGVTRDRIYGEVEWCGKTAFIVDTGGIEPKS 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310 DDI+ + ++ L ++ A++I+L+ + S Sbjct: 66 DDIILVQMRRQAQLAIDTANVIILVTDCKS 95 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 35/89 (39%), Positives = 53/89 (59%), Gaps = 7/89 (7%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK--ISDTAGIRE 279 + ++G NAGKSSL N + ++ IV+DI GTTRD TID +E K +DTAG+R Sbjct: 180 VAVIGKPNAGKSSLVNKITNEERCIVSDIAGTTRD--TIDTLVENKYGKFNFTDTAGLRR 237 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLL 305 I +EK I R + +E +D+ +++ Sbjct: 238 QSKIYDNIEKYSIIRAKMAIERSDVCVIM 266 >gi|289548228|ref|YP_003473216.1| ribosome-associated GTPase EngA [Thermocrinis albus DSM 14484] gi|289181845|gb|ADC89089.1| ribosome-associated GTPase EngA [Thermocrinis albus DSM 14484] Length = 430 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 48/85 (56%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +++I+G N GKS+LFN L + IV+ IPG TRD++ + + ++DT GI E Sbjct: 3 RVLIVGRPNVGKSTLFNRLVGRRKNIVSPIPGVTRDIVEAQVQWKDRKFIVADTGGIMEK 62 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 D + +E + + AD+IL + Sbjct: 63 GDELTREVRDKVLKAIRKADVILFV 87 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 3/95 (3%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273 E+ G K+ +G N GKSSL NA+ ++ +V+ + GTTRD + + + G + D Sbjct: 166 ELSYEGIKVSFVGRPNVGKSSLINAIMGEEKVLVSPVAGTTRDAVELPFEYGGERFVLVD 225 Query: 274 TAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305 TAG+R + VE + R+ +E +D++ L+ Sbjct: 226 TAGMRRPSKVEYGVEFFSVGRSIKAIELSDVVCLV 260 >gi|262341130|ref|YP_003283985.1| GTP-binding protein EngA [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272467|gb|ACY40375.1| GTP-binding protein EngA [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 443 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 79/168 (47%), Gaps = 21/168 (12%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI- 277 Y + I+G N GKS+ FN L + AIV G TRD + + + G + DT G Sbjct: 2 NYTVSIVGRPNVGKSTFFNRLVGRRKAIVHITSGVTRDRIFGNSEWNGVKFSVVDTGGFS 61 Query: 278 --RETDDIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEIS------------FPK 318 +D++EKE + F+ ++ AD+IL L +I ++ +EI+ Sbjct: 62 FATSENDVLEKEIKNQIFIAIKEADVILFLVDIKMGVLDTDREIAKILRKSQKITLLVVN 121 Query: 319 NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKF 366 +D + + +D + E + IS+ G G EL++K+ I +KF Sbjct: 122 KVDNGILYSDTDFFHLGFENC-YYISAINGSGTGELLDKLVEIFKDKF 168 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 7/87 (8%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 ++G N GKS+L N+ K+ IVT I GTTRD L + GY + DT G+R+ I Sbjct: 186 VVGRPNVGKSTLINSFLDKNHHIVTHISGTTRDSLDVFYKKWGYECILVDTPGVRKKSKI 245 Query: 284 VEKEGIK-----RTFLEVENADLILLL 305 +E I+ RT +E D+ LL+ Sbjct: 246 --RENIEFYSSIRTVRTIEYTDVCLLM 270 >gi|330936977|gb|EGH41077.1| GTP-binding protein Der [Pseudomonas syringae pv. pisi str. 1704B] Length = 334 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 54/92 (58%), Gaps = 3/92 (3%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 ++G KI I+G N GKS+L N + +D IV D PGTTRD + I + + DTAG Sbjct: 193 KDGIKIAIIGRPNVGKSTLVNRMLGEDRVIVYDEPGTTRDSIYIPFERNEEKYTLIDTAG 252 Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLL 305 +R+ I VEK + +T +++A++++ + Sbjct: 253 VRKRGKIHEEVEKFSVVKTLQAIKDANVVIFV 284 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS++FN L + AIV D+ G TRD + +G + DT GI + Sbjct: 5 IALVGRPNVGKSTMFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYILIDTGGISGDE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++++ +++ L +E AD++L L Sbjct: 65 HGMDEKMAEQSLLAIEEADVVLFL 88 >gi|319789668|ref|YP_004151301.1| ribosome-associated GTPase EngA [Thermovibrio ammonificans HB-1] gi|317114170|gb|ADU96660.1| ribosome-associated GTPase EngA [Thermovibrio ammonificans HB-1] Length = 479 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/87 (39%), Positives = 51/87 (58%), Gaps = 2/87 (2%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L NAL ++ AIV+DIPGTTRD + + + DTAGIR Sbjct: 223 KVAIVGRPNMGKSTLLNALVGEERAIVSDIPGTTRDAIDTYVRVGDDEFIFIDTAGIRRR 282 Query: 281 DDI--VEKEGIKRTFLEVENADLILLL 305 I +E R+ ++ AD+++L+ Sbjct: 283 GKIKDIEYYSYLRSLDAIDRADVVVLM 309 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 32/85 (37%), Positives = 50/85 (58%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKSSLFN L + VAI+ + PG TRD + + D++ + V + DT G+ E D Sbjct: 7 VAIVGRPNVGKSSLFNRLLGRKVAIIDNTPGVTRDRVVQEADIDEHKVVLVDTGGVVEKD 66 Query: 282 -DIVEKEGIKRTFLEVENADLILLL 305 KE ++ +E AD+I+ + Sbjct: 67 AHEFAKETTEQAKRAMEEADVIVFV 91 >gi|260893088|ref|YP_003239185.1| ribosome-associated GTPase EngA [Ammonifex degensii KC4] gi|260865229|gb|ACX52335.1| ribosome-associated GTPase EngA [Ammonifex degensii KC4] Length = 447 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/85 (40%), Positives = 51/85 (60%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 +VI+G N GKS+LFN L K VAIV + PG TRD L +++ G + DT G+ E+ Sbjct: 6 VVIVGRPNVGKSTLFNRLVGKGVAIVEEEPGVTRDRLYREVEWCGREFVLVDTGGVVESP 65 Query: 282 DIVEKEGIKRTFLE-VENADLILLL 305 + + I+R + +E ADL+L + Sbjct: 66 ESPLEVAIRRQVEQALEEADLVLFV 90 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 30/65 (46%), Positives = 39/65 (60%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKSSL NAL ++ IV+DIPGTTRD + EG + DTAG+R Sbjct: 182 VAIVGRPNVGKSSLVNALLGEERVIVSDIPGTTRDAVDTFFTWEGQPYILIDTAGLRRRS 241 Query: 282 DIVEK 286 I E+ Sbjct: 242 RIKEE 246 >gi|55820417|ref|YP_138859.1| GTP-binding protein EngA [Streptococcus thermophilus LMG 18311] gi|55822299|ref|YP_140740.1| GTP-binding protein EngA [Streptococcus thermophilus CNRZ1066] gi|81820353|sp|Q5M1D9|DER_STRT1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|81820516|sp|Q5M5X5|DER_STRT2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|55736402|gb|AAV60044.1| phosphoglycerate dehydrogenase-related protein [Streptococcus thermophilus LMG 18311] gi|55738284|gb|AAV61925.1| GTP-binding protein, putative [Streptococcus thermophilus CNRZ1066] Length = 436 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/145 (30%), Positives = 74/145 (51%), Gaps = 31/145 (21%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID-LDLEGYLVKISDTAGIRETDD 282 ++G N GKSSL NA+ +D I + I GTTRD + + +D EG + DTAG+R++ Sbjct: 179 LIGRPNVGKSSLINAILGEDRVIASPIAGTTRDAIDTNFVDSEGQEYTMIDTAGMRKSGK 238 Query: 283 I---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY 339 + EK I R+ ++ +D++L++ IN+++ I EY Sbjct: 239 VYENTEKYSIMRSMRAIDRSDVVLMV--INAEEGI----------------------REY 274 Query: 340 DHLISSF---TGEGLEELINKIKSI 361 D I+ F G+G+ ++NK +I Sbjct: 275 DKRIAGFAHEAGKGIIIVVNKWDTI 299 Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 45/84 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN +A + ++IV D+ G TRD + + + DT GI + D Sbjct: 6 VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTSAEWLNRQFSLIDTGGIDDVD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + + + AD+I+ + Sbjct: 66 APFMEQIKHQAGIAMTEADVIVFV 89 >gi|326803715|ref|YP_004321533.1| ribosome biogenesis GTPase Der [Aerococcus urinae ACS-120-V-Col10a] gi|326651282|gb|AEA01465.1| ribosome biogenesis GTPase Der [Aerococcus urinae ACS-120-V-Col10a] Length = 436 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 52/87 (59%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS++FN +A + ++IV D+PG TRD + + G +++ DT GI D Sbjct: 6 IAIVGRPNVGKSTIFNRIAGQRISIVEDVPGVTRDRVYAQGEWLGRKLRLIDTGGIEFND 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI 308 + ++ + + VE ADLI+++ + Sbjct: 66 EPFVEQIRLQAEIAVEEADLIIMMTSV 92 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 3/85 (3%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 ++G N GKSSL NA+ ++ IV+DI GTTRD + KI DTAGIR + Sbjct: 180 LIGRPNVGKSSLVNAILGENRVIVSDIAGTTRDAVDTYFSYNERSFKIIDTAGIRRKGRV 239 Query: 284 ---VEKEGIKRTFLEVENADLILLL 305 EK + R+ +E A ++LL+ Sbjct: 240 SESTEKYSVMRSMSAIEQASVVLLV 264 >gi|312277722|gb|ADQ62379.1| GTP-binding protein engA [Streptococcus thermophilus ND03] Length = 436 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/145 (30%), Positives = 74/145 (51%), Gaps = 31/145 (21%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID-LDLEGYLVKISDTAGIRETDD 282 ++G N GKSSL NA+ +D I + I GTTRD + + +D EG + DTAG+R++ Sbjct: 179 LIGRPNVGKSSLINAILGEDRVIASPIAGTTRDAIDTNFVDSEGQEYTMIDTAGMRKSGK 238 Query: 283 I---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY 339 + EK I R+ ++ +D++L++ IN+++ I EY Sbjct: 239 VYENTEKYSIMRSMRAIDRSDVVLMV--INAEEGI----------------------REY 274 Query: 340 DHLISSF---TGEGLEELINKIKSI 361 D I+ F G+G+ ++NK +I Sbjct: 275 DKRIAGFAHEAGKGIIIVVNKWDTI 299 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 45/84 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN +A + ++IV D+ G TRD + + + DT GI + D Sbjct: 6 VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTSAEWLNRQFSLIDTGGIDDVD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + + + AD+I+ + Sbjct: 66 APFMEQIKHQAGIAMTEADVIVFV 89 >gi|295398578|ref|ZP_06808610.1| ribosome-associated GTPase EngA [Aerococcus viridans ATCC 11563] gi|294973179|gb|EFG48974.1| ribosome-associated GTPase EngA [Aerococcus viridans ATCC 11563] Length = 436 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 50/85 (58%), Gaps = 3/85 (3%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 ++G N GKSSL NA+ ++ IV+++ GTTRD + + +G + KI DTAGIR+ + Sbjct: 180 LIGRPNVGKSSLVNAILGENRVIVSNVAGTTRDAIDTSFEDDGQVYKIIDTAGIRKRGKV 239 Query: 284 ---VEKEGIKRTFLEVENADLILLL 305 EK + R +E A + L++ Sbjct: 240 YEATEKYSVMRAMRAIERAQVCLVV 264 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 46/87 (52%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS++FN + ++IV D PG TRD + + G + + DT GI D Sbjct: 6 IAIVGRPNVGKSTIFNRVVGDRISIVQDEPGVTRDRIYAQGEWLGKQLNVIDTGGIEFND 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI 308 + + + +E AD+I+++ + Sbjct: 66 QDFMTQIRLQAEIAMEEADVIIMMTNV 92 >gi|224370723|ref|YP_002604887.1| GTP-binding protein EngA [Desulfobacterium autotrophicum HRM2] gi|259645871|sp|C0QA05|DER_DESAH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|223693440|gb|ACN16723.1| EngA2 [Desulfobacterium autotrophicum HRM2] Length = 492 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 3/87 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I + G N GKSSL N L K +V+ +PGTTRD + + ++ G ++ DTAGIR Sbjct: 190 IAVAGRPNVGKSSLINRLFGKSRVVVSHVPGTTRDSVDLSIERNGRRFRLIDTAGIRRKG 249 Query: 282 DI---VEKEGIKRTFLEVENADLILLL 305 + +EK I ++ ++ D+ L+L Sbjct: 250 KVRERIEKYSILKSLKSLDQCDVALIL 276 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 + ++G N GKS+LFN + + A+V D PG TRD +D + DT G + Sbjct: 5 VALVGRPNVGKSTLFNRITRSRNALVDDFPGVTRDRHYVDAVWNERPFTLVDTGGFLLSD 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 DD +E L +E+AD++ L+ Sbjct: 65 DDFFAREIRGHVELAIEDADIVALV 89 >gi|229829020|ref|ZP_04455089.1| hypothetical protein GCWU000342_01105 [Shuttleworthia satelles DSM 14600] gi|229792183|gb|EEP28297.1| hypothetical protein GCWU000342_01105 [Shuttleworthia satelles DSM 14600] Length = 441 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 54/90 (60%), Gaps = 1/90 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + ++G N GKS+LFNALA + ++IV D PG TRD + D+ + + DT GI ++ Sbjct: 6 VAVVGRPNVGKSTLFNALAGERISIVEDTPGVTRDRIYADVSWLDHEFTMIDTGGIEPDS 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310 DI+ + ++ + ++ AD+I+ + ++ Sbjct: 66 SDIILSQMREQAQIAIDTADVIIFMTDVRQ 95 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 47/88 (53%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I ++G N GKSSL N L K IV+DI GTTRD + + DTAG+R Sbjct: 179 RIAVVGKPNVGKSSLINRLCGKQRLIVSDIAGTTRDAVDTRVRFNKKDYIFVDTAGLRRK 238 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 I +E+ I R VE AD+++L+ Sbjct: 239 SRIQGDIERYSIVRAVAAVEKADVVVLV 266 >gi|206895221|ref|YP_002246509.1| small GTP-binding protein domain [Coprothermobacter proteolyticus DSM 5265] gi|206737838|gb|ACI16916.1| small GTP-binding protein domain [Coprothermobacter proteolyticus DSM 5265] Length = 424 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 88/164 (53%), Gaps = 19/164 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280 I I+G N GKSSL NA+A +D+A+V+D+PGTT D + L+++ V + DT G+ + Sbjct: 18 IAIVGRRNVGKSSLINAIAGQDIALVSDVPGTTTDPVYKTLEVKPLGPVTLIDTPGLDDE 77 Query: 281 DDIVEK--EGIKRTFLEVENADLILLLKEINSKKE---ISFPKN--IDFIFIGTKSDL-- 331 + +K E KR + + A IL++ + E +S +N I F+ KSD+ Sbjct: 78 GLLGQKRVERAKRALYKADAA--ILVVDDKPGAFEDFIVSLLRNLSIPFVIAVNKSDVTE 135 Query: 332 -YSTYTEEYDHL------ISSFTGEGLEELINKIKSILSNKFKK 368 T ++Y+ +++ G+ + ELI + S+L ++ +K Sbjct: 136 DTKTLVKDYEPFNVPVVKVAAAQGKNISELIQVLSSLLPDEEEK 179 >gi|260460374|ref|ZP_05808626.1| small GTP-binding protein [Mesorhizobium opportunistum WSM2075] gi|259034019|gb|EEW35278.1| small GTP-binding protein [Mesorhizobium opportunistum WSM2075] Length = 476 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 69/135 (51%), Gaps = 9/135 (6%) Query: 154 LSSLYGQWIDKLTH--IRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGK 211 +S+ +GQ + L I + EA +EED Q ++ EVL + DI+ ++ Sbjct: 144 VSAEHGQGMPDLRDAVIAALGEARAFGEDEEDDQEIATGEVL-----IGEDIADPDAEPA 198 Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 + +I ++G NAGKS+L NAL ++ + G TRD +++D D G +K+ Sbjct: 199 YDDT--KPMRIAVVGRPNAGKSTLINALIGEERLLTGPEAGITRDSISVDWDWRGRRIKL 256 Query: 272 SDTAGIRETDDIVEK 286 DTAG+R I EK Sbjct: 257 FDTAGMRRKARIHEK 271 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 32/57 (56%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 +K+ I+G N GKS+LFN L + +A+V D PG TRD L + DTAG Sbjct: 3 FKVAIIGRPNVGKSTLFNRLVGRKLALVDDTPGVTRDRRVHAAKLYDLHFDVIDTAG 59 >gi|158425952|ref|YP_001527244.1| GTP-binding protein EngA [Azorhizobium caulinodans ORS 571] gi|172047845|sp|A8HVL5|DER_AZOC5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|158332841|dbj|BAF90326.1| transcriptional regulator [Azorhizobium caulinodans ORS 571] Length = 453 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/87 (40%), Positives = 48/87 (55%), Gaps = 1/87 (1%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 + + I+G N GKS+LFN L K +A+V D PG TRD D L +I DTAG+ E Sbjct: 3 FTLAIVGRPNVGKSTLFNRLVGKRLALVDDRPGVTRDRREGDARLGDLAFRIVDTAGLEE 62 Query: 280 TD-DIVEKEGIKRTFLEVENADLILLL 305 D D +E +T + +AD +L L Sbjct: 63 ADADSLEGRMRAQTETAIGDADALLFL 89 Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 46/177 (25%), Positives = 84/177 (47%), Gaps = 27/177 (15%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ ++G NAGKS+L N L +D + G TRD +++++ G +++ DTAG+R+ Sbjct: 188 KVAVIGRPNAGKSTLINRLLGEDRLLTGPEAGITRDSISVEVTWNGRALEVFDTAGLRKR 247 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI-------FIG-TKS 329 +D +EK ++ A+++++L + E + D + +G KS Sbjct: 248 ARIEDKLEKLSAADALRAMKFAEVVVVLMDATKPFEEQDLRIADLVVREGRALVLGYNKS 307 Query: 330 DL-----YSTYTEEYDHL-----------ISSFTGEGLEELINKIKSILSNKFKKLP 370 DL +S EE DH +S TG GL++L+ I + + ++P Sbjct: 308 DLVGPAAFSRLREEADHWLPQVKGVPIVPLSGLTGRGLDKLVEAIAATYAVWNTRIP 364 >gi|320539280|ref|ZP_08038950.1| ribosome-associated GTPase [Serratia symbiotica str. Tucson] gi|320030672|gb|EFW12681.1| ribosome-associated GTPase [Serratia symbiotica str. Tucson] Length = 495 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++EG I DT GI + Sbjct: 5 VALVGRPNVGKSTLFNRLTQTRDALVADFPGLTRDRKYGRAEVEGNEFIIVDTGGIDGHE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 D VE ++ L +E AD++L + Sbjct: 65 DGVETRMAGQSLLAIEEADIVLFM 88 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/98 (34%), Positives = 61/98 (62%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I + + + DTAG+R Sbjct: 209 KLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMVRDEREYVLIDTAGVRKH 268 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + + VEK + +T +E+A+++LL+ I++++ IS Sbjct: 269 GKVTETVEKFSVIKTLQAIEDANVVLLV--IDAREGIS 304 >gi|13508214|ref|NP_110163.1| GTP-binding protein EngA [Mycoplasma pneumoniae M129] gi|8247924|sp|P75309|DER_MYCPN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|11379528|gb|AAG34744.1|AE000034_1 GTPase [Mycoplasma pneumoniae M129] gi|301633464|gb|ADK87018.1| ribosome-associated GTPase EngA [Mycoplasma pneumoniae FH] Length = 449 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G N GKSSL N L +++ +V+D GTTRD + I L + G + DTAGIR Sbjct: 181 RFCVIGKPNVGKSSLINQLVQQNRVLVSDESGTTRDAIDIPLRVNGQNYLLIDTAGIRRK 240 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 I +E +T L + +++ILL+ Sbjct: 241 GKIAPGIEAASYGKTQLAIARSNIILLM 268 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 20/37 (54%), Positives = 26/37 (70%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 + + I+G N GKSSLFN L +K AI++D P TTRD Sbjct: 2 FTVAIIGRPNVGKSSLFNRLIQKPYAIISDTPNTTRD 38 >gi|239907769|ref|YP_002954510.1| GTP-binding protein EngA [Desulfovibrio magneticus RS-1] gi|259645872|sp|C4XIQ6|DER_DESMR RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|239797635|dbj|BAH76624.1| GTP-binding protein EngA [Desulfovibrio magneticus RS-1] Length = 444 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/128 (30%), Positives = 68/128 (53%), Gaps = 11/128 (8%) Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274 +++ ++ +LG NAGKSSL NAL + IV+DI GTTRD + + + +G DT Sbjct: 175 LVQTVLRLAVLGRPNAGKSSLINALVGESRLIVSDIAGTTRDAVDVVVHQKGKRYLFVDT 234 Query: 275 AGIRETDDI---VEKEGIKRTFLEVENADLILLLKE------INSKKEISF--PKNIDFI 323 AG+R+ I +E+ + + + AD+ +++ + + K+ ISF + F+ Sbjct: 235 AGVRKRTRITDGLERYSVAKALSSAKRADVAVVVIDATGGVGVQDKRLISFLDSERKAFL 294 Query: 324 FIGTKSDL 331 K+DL Sbjct: 295 VAVNKTDL 302 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 50/85 (58%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RET 280 + I+G N GKS+LFN L + AI D+PG TRD L ++EG V + DT G+ E Sbjct: 5 VAIVGRPNVGKSTLFNRLTRGRRAITHDLPGVTRDRLEAPAEIEGRFVTLVDTGGMDYEA 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 ++ + ++ +++ + AD++L L Sbjct: 65 EESLARQIVEQAEAALVTADVVLFL 89 >gi|254418441|ref|ZP_05032165.1| GTPase, putative [Brevundimonas sp. BAL3] gi|196184618|gb|EDX79594.1| GTPase, putative [Brevundimonas sp. BAL3] Length = 539 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/105 (34%), Positives = 64/105 (60%), Gaps = 6/105 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE- 279 K+ I+G N GKS+LFN L K +A+V D PG TRD D ++ + + DTAG + Sbjct: 4 KVAIVGRPNVGKSTLFNRLVGKRLALVDDRPGVTRDRRYADGNIGDMDLTLIDTAGYEDV 63 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF 324 TDD +E ++T +E+A+L++ + +++++ ++ ++D IF Sbjct: 64 TDDSLEARMREQTEAALEDAELVMFM--MDAREGVT---SLDRIF 103 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I ++G NAGKS+L N L D + G TRD +++D EG +++ DTAG+R Sbjct: 179 RIAVIGRPNAGKSTLINRLIGDDRLLTGPEAGITRDSISVDWTFEGKNIRLVDTAGMRRK 238 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +EK + T + A++++L+ Sbjct: 239 ARVQEKLEKLSVADTIRAITFAEVVILM 266 >gi|4467675|emb|CAB37789.1| GTP-binding protein homologue [Helicobacter pylori] Length = 170 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L + V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNAHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKPAQMSDLIL 90 >gi|312110436|ref|YP_003988752.1| ribosome-associated GTPase EngA [Geobacillus sp. Y4.1MC1] gi|311215537|gb|ADP74141.1| ribosome-associated GTPase EngA [Geobacillus sp. Y4.1MC1] Length = 436 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K ++G N GKSSL NA+ ++ IV+DI GTTRD + EG I DTAG+R+ Sbjct: 177 KFCLIGRPNVGKSSLVNAILGEERVIVSDIAGTTRDAVDTTFVREGQEYVIIDTAGMRKR 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 I EK + R +E +D++L++ Sbjct: 237 GKIYENTEKYSVLRALKAIERSDVVLVV 264 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/84 (28%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN + + ++IV D+PG TRD + + + + DT GI D Sbjct: 6 VAIVGRPNVGKSTIFNRIVGERISIVEDVPGVTRDRIYSSAEWLNHKFYLIDTGGIDIGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + + ++ + ++ AD+I+ + Sbjct: 66 EPLLVQIRQQAEIAIDEADVIIFM 89 >gi|256828007|ref|YP_003156735.1| small GTP-binding protein [Desulfomicrobium baculatum DSM 4028] gi|256577183|gb|ACU88319.1| small GTP-binding protein [Desulfomicrobium baculatum DSM 4028] Length = 445 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/128 (31%), Positives = 64/128 (50%), Gaps = 11/128 (8%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 + G KI +LG NAGKSS NAL K +V+ GTTRD + + + G DTAG Sbjct: 178 QGGLKIALLGRPNAGKSSTINALLGKKRLMVSAEAGTTRDCVDVTVQRGGKTYTFVDTAG 237 Query: 277 IRETDDIV---EKEGIKRTFLEVENADLILLLKEI------NSKKEISF--PKNIDFIFI 325 +R ++ E + + + AD+++L+ +I K+ +SF + + F+ + Sbjct: 238 VRRKSKVIDSLEYFSVVHSMQAAKQADVVVLVLDIMDGVVGQDKRLLSFLDTEKVPFVIV 297 Query: 326 GTKSDLYS 333 K DL S Sbjct: 298 VNKIDLLS 305 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 + ++G N GKS+LFN L K+ V+I D+ G TRD + ++ E + DT G + ++ Sbjct: 8 VALIGRPNVGKSTLFNRLIKRRVSITHDMAGVTRDSIFSEVRGETRTYMLIDTGGLVPDS 67 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 D +E + + ADLIL + Sbjct: 68 SDEIEISIFDQAREAMAGADLILFI 92 >gi|18075567|emb|CAD11179.1| GTP-binding protein [Helicobacter pylori] gi|18075569|emb|CAD11180.1| GTP-binding protein [Helicobacter pylori] gi|122702793|emb|CAL88586.1| GTPase [Helicobacter pylori] gi|122702813|emb|CAL88596.1| GTPase [Helicobacter pylori] Length = 170 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSL N LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLLNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|88799909|ref|ZP_01115481.1| predicted GTPase [Reinekea sp. MED297] gi|88777340|gb|EAR08543.1| predicted GTPase [Reinekea sp. MED297] Length = 458 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKS+L N + +D +V D PGTT D + I + G + DTAG+R Sbjct: 178 RLAIIGRPNVGKSTLVNRMLGEDRVVVYDHPGTTMDSIYIPYERHGKAYTLIDTAGVRRR 237 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 +I VEK I +T +++A++++L+ Sbjct: 238 KNITEAVEKFSIVKTLQAIQDANVVVLV 265 Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 44/84 (52%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN + A+V D G TRD D L + DT G+ + Sbjct: 5 IALVGRPNVGKSTLFNRFTRTRDALVADWSGLTRDRKYGDGKLGERPFIVIDTGGVSGFE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + +++ +++F ++ AD +L L Sbjct: 65 EGLDEAMARQSFAAIDEADAVLFL 88 >gi|291563224|emb|CBL42040.1| ribosome-associated GTPase EngA [butyrate-producing bacterium SS3/4] Length = 441 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I I+G N GKSS+ N L ++ IV++I GTTRD + ++ G DTAG+R Sbjct: 179 RIAIVGKPNVGKSSIINKLLGENRVIVSNIAGTTRDAVDTEIVRNGTEYIFIDTAGLRRK 238 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 I +E+ I RT VE AD++L++ Sbjct: 239 SKIKEDIERYSIIRTVTAVERADVVLMV 266 Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 50/88 (56%), Gaps = 1/88 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFN LA ++IV D PG TRD + D + DT GI ++ Sbjct: 6 VAIVGRPNVGKSTLFNVLAGSTISIVKDTPGVTRDRIYADCTWLNNNFTLIDTGGIEPDS 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308 DI+ + ++ + ++ AD+I+ + ++ Sbjct: 66 KDIILAQMREQAQIAIDTADVIIFIVDV 93 >gi|330752119|emb|CBL87080.1| GTP-binding protein [uncultured Flavobacteria bacterium] Length = 434 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G NAGKSS N+L +D IVTDI GTTRD + + G+ + DTAGIR Sbjct: 176 RFAVVGRPNAGKSSFINSLIGEDRYIVTDIAGTTRDSIDTRYNRFGFEFNLIDTAGIRRK 235 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E + R+ +E+ D+ +L+ Sbjct: 236 AKVKEDIEFYSVMRSVRAIEHCDVCILV 263 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 1/90 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 + I+G N GKS+ FN + +K AIV + G TRD D G + DT G + + Sbjct: 5 VAIVGRPNVGKSTFFNRMIQKREAIVDAVSGVTRDRHYGKTDWNGRDFSLIDTGGYVVGS 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310 DD+ EKE K+ L +E AD I+ + E+ + Sbjct: 65 DDVFEKEIDKQVELAIEEADAIIFMVEVET 94 >gi|15606936|ref|NP_214317.1| GTP binding protein Era [Aquifex aeolicus VF5] gi|8134426|sp|O67749|DER_AQUAE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|2984183|gb|AAC07715.1| GTP binding protein Era [Aquifex aeolicus VF5] Length = 433 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/86 (40%), Positives = 48/86 (55%), Gaps = 1/86 (1%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRE 279 ++VI+G N GKS+LFN + K AIV D PG TRD + + G I DT G + E Sbjct: 4 RVVIIGRPNVGKSTLFNRIIGKRYAIVEDYPGVTRDKIEAKAEWAGKEFIIVDTGGLVPE 63 Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305 T D + +E K E+ AD+IL + Sbjct: 64 TKDELIREVKKVVEQEIPKADVILFV 89 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 82/176 (46%), Gaps = 26/176 (14%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G K+ +G N GKSSL NA+ K + IV+ I GTTRD + I + + DTAG+R Sbjct: 174 GIKVAFIGRPNVGKSSLVNAILKDERVIVSPIAGTTRDAIEIPFRWKDKNFILIDTAGVR 233 Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNID-----FIFIGT 327 ++ +E + R+ ++ AD+ L+ E ++++ I+ + + Sbjct: 234 RPSNVEYGIEFYSVGRSLKAIDLADVCCLVIDASEGPTRQDKRLGGLIERRYKGCVIVAN 293 Query: 328 KSDLYSTYTEEYDHLISS-----------FT----GEGLEELINKIKSILSNKFKK 368 K D+ EE + +I FT G+G+EEL+N I + + K+ Sbjct: 294 KMDISPWSEEELEGIIRKELFFLDFAPIVFTVATKGKGVEELLNWIDVVYKDYTKQ 349 >gi|84517346|ref|ZP_01004700.1| GTP-binding protein EngA [Loktanella vestfoldensis SKA53] gi|84508826|gb|EAQ05289.1| GTP-binding protein EngA [Loktanella vestfoldensis SKA53] Length = 485 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 49/160 (30%), Positives = 77/160 (48%), Gaps = 18/160 (11%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 + + I+G N GKS+LFN L K +A+V D PG TRD+ + L + D+AG+ E Sbjct: 3 FTLAIVGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDLREGEGRLADLRFTVIDSAGLEE 62 Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330 TDD ++ + T VE AD+ L + + + +I KN + I K + Sbjct: 63 ATDDSLQGRMRRLTERAVEMADVCLFMIDARAGVLPADQVFADILRKKNANVILAANKGE 122 Query: 331 LYS---TYTEEY------DHLISSFTGEGLEELINKIKSI 361 + T E Y IS+ GEG+ EL++ ++ I Sbjct: 123 GRAADNTILEAYALGLGEPIRISAEHGEGMGELMDVLRPI 162 Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 5/71 (7%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-----DLEGYLVKISDTA 275 +I ++G NAGKS+L N + ++ + G TRD +++ D G ++I DTA Sbjct: 199 QIAVVGRPNAGKSTLINKIIGEERLLTGPEAGITRDAISVKQVWAGPDGIGVPMRIFDTA 258 Query: 276 GIRETDDIVEK 286 G+R I EK Sbjct: 259 GMRRKAKIHEK 269 >gi|58696986|ref|ZP_00372467.1| GTP-binding protein [Wolbachia endosymbiont of Drosophila simulans] gi|58698319|ref|ZP_00373236.1| GTP-binding protein [Wolbachia endosymbiont of Drosophila ananassae] gi|58535192|gb|EAL59274.1| GTP-binding protein [Wolbachia endosymbiont of Drosophila ananassae] gi|58536766|gb|EAL60014.1| GTP-binding protein [Wolbachia endosymbiont of Drosophila simulans] Length = 399 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 30/75 (40%), Positives = 46/75 (61%), Gaps = 2/75 (2%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I I+G N GKS+ N L ++ I + PGTTRD + I D +G L+ + DTAGIR Sbjct: 135 RIAIIGRPNVGKSTFLNGLLAENRLITSSEPGTTRDSVDITYDHDGELITLIDTAGIRRK 194 Query: 281 DDIVEKEGIKRTFLE 295 ++V +G++ F+E Sbjct: 195 ANVV--DGLESRFVE 207 >gi|77463250|ref|YP_352754.1| GTP-binding protein EngA [Rhodobacter sphaeroides 2.4.1] gi|126462124|ref|YP_001043238.1| GTP-binding protein EngA [Rhodobacter sphaeroides ATCC 17029] gi|221639113|ref|YP_002525375.1| GTP-binding protein EngA [Rhodobacter sphaeroides KD131] gi|332558128|ref|ZP_08412450.1| GTP-binding protein Der [Rhodobacter sphaeroides WS8N] gi|123592083|sp|Q3J2Y1|DER_RHOS4 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|166225847|sp|A3PJF0|DER_RHOS1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|254783164|sp|B9KRT2|DER_RHOSK RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|77387668|gb|ABA78853.1| Probable GTP-binding protein [Rhodobacter sphaeroides 2.4.1] gi|126103788|gb|ABN76466.1| small GTP-binding protein [Rhodobacter sphaeroides ATCC 17029] gi|221159894|gb|ACM00874.1| GTP-binding protein engA [Rhodobacter sphaeroides KD131] gi|332275840|gb|EGJ21155.1| GTP-binding protein Der [Rhodobacter sphaeroides WS8N] Length = 487 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/87 (41%), Positives = 49/87 (56%), Gaps = 1/87 (1%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 + + I+G N GKS+LFN L K +A+V D PG TRD+ D L + DTAG+ E Sbjct: 3 FTLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGDARLIDLRFTVIDTAGLEE 62 Query: 280 -TDDIVEKEGIKRTFLEVENADLILLL 305 TDD ++ + T VE AD+ L L Sbjct: 63 VTDDSLQGRMRRLTERAVEMADVCLFL 89 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 40/146 (27%), Positives = 68/146 (46%), Gaps = 33/146 (22%) Query: 154 LSSLYGQWIDKLTHI----------RSFIEA---DLDFSEEEDVQNFSSKEVLNDILFLK 200 LS+ +G+ +D L HI R+ +A D+D EEE L+ Sbjct: 144 LSAEHGEGMDDLYHILRPIAEGFAERAAADAPVVDVDVPEEE--------------ADLE 189 Query: 201 NDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260 D +H +++ +I ++G NAGKS+L N + +D + G TRD +++ Sbjct: 190 ADPEAHKP------TVKHPLQIAVIGRPNAGKSTLINKIIGEDRLLTGPEAGITRDAISV 243 Query: 261 DLDLEGYLVKISDTAGIRETDDIVEK 286 + G ++I DTAG+R+ I +K Sbjct: 244 RSEWHGTPIRIFDTAGMRKKARISDK 269 >gi|42520904|ref|NP_966819.1| GTP-binding protein EngA [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410645|gb|AAS14753.1| GTP-binding protein [Wolbachia endosymbiont of Drosophila melanogaster] Length = 441 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 30/75 (40%), Positives = 46/75 (61%), Gaps = 2/75 (2%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I I+G N GKS+ N L ++ I + PGTTRD + I D +G L+ + DTAGIR Sbjct: 177 RIAIIGRPNVGKSTFLNGLLAENRLITSSEPGTTRDSVDITYDHDGELITLIDTAGIRRK 236 Query: 281 DDIVEKEGIKRTFLE 295 ++V +G++ F+E Sbjct: 237 ANVV--DGLESRFVE 249 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 21/36 (58%), Positives = 27/36 (75%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 KI I+G NAGKS+LFN L + A+V++IPG TRD Sbjct: 3 KIAIVGLPNAGKSTLFNRLVGRKAAVVSNIPGVTRD 38 >gi|332140453|ref|YP_004426191.1| GTP-binding protein Der [Alteromonas macleodii str. 'Deep ecotype'] gi|332141960|ref|YP_004427698.1| GTP-binding protein Der [Alteromonas macleodii str. 'Deep ecotype'] gi|238693251|sp|B4RV85|DER_ALTMD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|327550475|gb|AEA97193.1| GTP-binding protein Der [Alteromonas macleodii str. 'Deep ecotype'] gi|327551982|gb|AEA98700.1| GTP-binding protein Der [Alteromonas macleodii str. 'Deep ecotype'] Length = 481 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 54/88 (61%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ + + DTAG+R+ Sbjct: 195 KLAIVGKPNVGKSTLTNRILGEERVVVYDMPGTTRDSVYIPMERDEREYILIDTAGVRKR 254 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 I VEK I +T +E A+++LL+ Sbjct: 255 KKISEAVEKFSIVKTLQAIEEANVVLLV 282 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 45/84 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L A+V D PG TRD E + DT GI + Sbjct: 5 VALVGRPNVGKSTLFNRLTNTRDALVADYPGLTRDRKYGQAKFEKRQFIVVDTGGITGDE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + ++ E +++ L +E AD++L L Sbjct: 65 EGIDAEMAQQSLLAIEEADVVLFL 88 >gi|146278196|ref|YP_001168355.1| GTP-binding protein EngA [Rhodobacter sphaeroides ATCC 17025] gi|166225848|sp|A4WUI6|DER_RHOS5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|145556437|gb|ABP71050.1| small GTP-binding protein [Rhodobacter sphaeroides ATCC 17025] Length = 487 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/87 (41%), Positives = 49/87 (56%), Gaps = 1/87 (1%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 + + I+G N GKS+LFN L K +A+V D PG TRD+ D L + DTAG+ E Sbjct: 3 FTLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGDARLIDLRFTVIDTAGLEE 62 Query: 280 -TDDIVEKEGIKRTFLEVENADLILLL 305 TDD ++ + T VE AD+ L L Sbjct: 63 VTDDSLQGRMRRLTERAVEMADVCLFL 89 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 33/147 (22%) Query: 153 ELSSLYGQWIDKLTHI----------RSFIEA---DLDFSEEEDVQNFSSKEVLNDILFL 199 LS+ +G+ +D L HI R+ +A D+D SEEE L Sbjct: 143 RLSAEHGEGMDDLYHILRPIAEGFAERAAADAPVVDVDVSEEE--------------ADL 188 Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259 + D +H ++ +I ++G NAGKS+L N + +D + G TRD ++ Sbjct: 189 EADPDAHKP------TVKRPLQIAVIGRPNAGKSTLINKIIGEDRLLTGPEAGITRDAIS 242 Query: 260 IDLDLEGYLVKISDTAGIRETDDIVEK 286 + + +G ++I DTAG+R+ I +K Sbjct: 243 VRSEWQGTPIRIFDTAGMRKKARISDK 269 >gi|295398957|ref|ZP_06808939.1| ribosome-associated GTPase EngA [Geobacillus thermoglucosidasius C56-YS93] gi|294978423|gb|EFG54019.1| ribosome-associated GTPase EngA [Geobacillus thermoglucosidasius C56-YS93] Length = 436 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K ++G N GKSSL NA+ ++ IV+DI GTTRD + EG I DTAG+R+ Sbjct: 177 KFCLIGRPNVGKSSLVNAILGEERVIVSDIAGTTRDAVDTTFVREGQEYVIIDTAGMRKR 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 I EK + R +E +D++L++ Sbjct: 237 GKIYENTEKYSVLRALKAIERSDVVLVV 264 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/84 (28%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN + + ++IV D+PG TRD + + + + DT GI D Sbjct: 6 VAIVGRPNVGKSTIFNRIVGERISIVEDVPGVTRDRIYSSAEWLNHKFYLIDTGGIDIGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + + ++ + ++ AD+I+ + Sbjct: 66 EPLLVQIRQQAEIAIDEADVIIFM 89 >gi|225631062|ref|ZP_03787800.1| GTP-binding protein [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225591242|gb|EEH12386.1| GTP-binding protein [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 441 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 30/75 (40%), Positives = 46/75 (61%), Gaps = 2/75 (2%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I I+G N GKS+ N L ++ I + PGTTRD + I D +G L+ + DTAGIR Sbjct: 177 RIAIIGRPNVGKSTFLNGLLAENRLITSSEPGTTRDSVDITYDHDGELITLIDTAGIRRK 236 Query: 281 DDIVEKEGIKRTFLE 295 ++V +G++ F+E Sbjct: 237 ANVV--DGLESRFVE 249 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 21/36 (58%), Positives = 27/36 (75%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 KI I+G NAGKS+LFN L + A+V++IPG TRD Sbjct: 3 KIAIVGLPNAGKSTLFNRLVGRKAAVVSNIPGVTRD 38 >gi|239827511|ref|YP_002950135.1| GTP-binding protein EngA [Geobacillus sp. WCH70] gi|259645879|sp|C5D3F4|DER_GEOSW RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|239807804|gb|ACS24869.1| small GTP-binding protein [Geobacillus sp. WCH70] Length = 436 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K ++G N GKSSL NA+ ++ IV+DI GTTRD + EG I DTAG+R+ Sbjct: 177 KFCLIGRPNVGKSSLVNAILGEERVIVSDIAGTTRDAVDTTFVREGQEYVIIDTAGMRKR 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 I EK + R +E +D++L++ Sbjct: 237 GKIYESTEKYSVLRALKAIERSDVVLVV 264 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/84 (28%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN + + ++IV D+PG TRD + + + + DT GI D Sbjct: 6 VAIVGRPNVGKSTIFNRIVGERISIVEDVPGVTRDRIYSSAEWLNHKFYLIDTGGIDIGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + + ++ + ++ AD+I+ + Sbjct: 66 EPLLVQIRQQAEIAIDEADVIIFM 89 >gi|148244763|ref|YP_001219457.1| Era/TrmE family GTP-binding protein [Candidatus Vesicomyosocius okutanii HA] gi|146326590|dbj|BAF61733.1| GTP-binding protein, Era/TrmE family [Candidatus Vesicomyosocius okutanii HA] Length = 465 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/97 (35%), Positives = 54/97 (55%), Gaps = 3/97 (3%) Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 + E + G I +LG N GKS+L N + ++ I D+PGTTRD + I + +G + Sbjct: 170 VNEEVVEGITIAVLGKPNVGKSTLINHILREKRVIAIDLPGTTRDSIYIPFERKGQQYTL 229 Query: 272 SDTAGIRE---TDDIVEKEGIKRTFLEVENADLILLL 305 DTAGIR T + +E I +T +E A +++L+ Sbjct: 230 IDTAGIRRKNSTHEKIEIFSIIKTINALERAHVVILV 266 Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust. Identities = 51/161 (31%), Positives = 78/161 (48%), Gaps = 33/161 (20%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-----VLTIDLDLEGYLVKISDTAG 276 I ++G N GKS+LFN L+ A+V+D G TRD VL D D + + I DT G Sbjct: 6 ICLIGRPNVGKSTLFNRLSHSRQALVSDFAGLTRDRQYAKVLLND-DTQTF-TTIIDTGG 63 Query: 277 IRETDDIVEKEGIKRTFLE-VENADLILLLKEINSKKEI------------SFPKNIDFI 323 ++V+ GI+ L +E +D+I + +NS+ + KNI I Sbjct: 64 FTNKVNLVD-SGIQDQILSALEESDVIYFI--LNSRDGVISLDLEIASHLRRLKKNI--I 118 Query: 324 FIGTKSD-LYSTYTEEYDH-------LISSFTGEGLEELIN 356 + K++ L T T E+ LIS+ G+G++ LIN Sbjct: 119 LVCNKAEGLNPTLTTEFFELGLGKPILISAEHGQGIDNLIN 159 >gi|91788466|ref|YP_549418.1| GTP-binding protein EngA [Polaromonas sp. JS666] gi|123355649|sp|Q12AC2|DER_POLSJ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|91697691|gb|ABE44520.1| Small GTP-binding protein domain [Polaromonas sp. JS666] Length = 447 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 28/88 (31%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ + G N GKS+L N ++ + D+PGTTRD +++ + G ++ DTAG+R Sbjct: 181 RLAVAGRPNVGKSTLINTWLGEERLVSFDLPGTTRDAISVPFERAGQKFELIDTAGLRRK 240 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +EK + +T +E A+++LLL Sbjct: 241 GKVFEAIEKFSVVKTLQAIEGANVVLLL 268 Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust. Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS++FN L K AIV D G TRD + L + + DT G E D Sbjct: 5 IALVGRPNVGKSTIFNRLTKTRDAIVADFAGLTRDRHYGNGKLGSHEYIVIDTGGF-EPD 63 Query: 282 DI--VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + KE K+T V AD+++ + ++++ IS Sbjct: 64 AASGIYKEMAKQTRQAVAEADVVIFV--VDARAGIS 97 >gi|323143788|ref|ZP_08078456.1| ribosome biogenesis GTPase Der [Succinatimonas hippei YIT 12066] gi|322416501|gb|EFY07167.1| ribosome biogenesis GTPase Der [Succinatimonas hippei YIT 12066] Length = 568 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/98 (34%), Positives = 59/98 (60%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K ++G N GKS+L N L +D +V D+PGTTRD + I L+ E + DTAG+R+ Sbjct: 242 KFALVGKPNVGKSTLTNRLLGEDRVVVCDMPGTTRDSIYIPLEREHKKYIVIDTAGVRKR 301 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + +EK I +T +E+ ++ +L+ I++++ I+ Sbjct: 302 RKVSEAIEKFSIVKTLKAIEDCNVAVLV--IDARENIT 337 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 5/88 (5%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI---- 277 + ++G N GKS+LFN L K A+V D PG TRD +G + DT GI Sbjct: 4 VALVGCPNVGKSTLFNRLTKTRDALVADFPGLTRDRKYGRALFDGREYIVIDTGGIAKDA 63 Query: 278 RETDDIVEKEGIKRTFLEVENADLILLL 305 + D+ K ++ L +E DL+L + Sbjct: 64 EQPSDLTSKM-TEQALLAIEECDLVLFM 90 >gi|283955141|ref|ZP_06372643.1| GTPase family protein [Campylobacter jejuni subsp. jejuni 414] gi|283793354|gb|EFC32121.1| GTPase family protein [Campylobacter jejuni subsp. jejuni 414] Length = 460 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 52/84 (61%), Gaps = 1/84 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I+++G N GKSSLFN +A++ +AI +DI GTTRD ++ + + D+ G+ E+D Sbjct: 4 IILIGKPNVGKSSLFNRMARQRIAITSDISGTTRDTNKTEIFIHSKKAILIDSGGLDESD 63 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ K K T V+ +D+IL L Sbjct: 64 ELF-KNVKKNTLKVVKESDIILYL 86 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/144 (31%), Positives = 73/144 (50%), Gaps = 27/144 (18%) Query: 154 LSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGK-- 211 L LY W++K H F+ D EEE++++F H +GK Sbjct: 149 LDELY-DWLEKFLH-EEFLIPD----EEENLEDFLE----------------HYEEGKEF 186 Query: 212 -LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270 E+ +N ++ I+G N GKSSL NAL K++ ++V+ I GTT D + + + +++ Sbjct: 187 QFKEVDQNHIRVGIVGRVNVGKSSLLNALVKQERSVVSSIAGTTIDPVNESIVHKDKVIE 246 Query: 271 ISDTAGIRETDDI--VEKEGIKRT 292 DTAGIR+ I +E+ + RT Sbjct: 247 FVDTAGIRKRGKIQGLERFALNRT 270 >gi|225630952|ref|YP_002727743.1| GTP-binding protein [Wolbachia sp. wRi] gi|225592933|gb|ACN95952.1| GTP-binding protein [Wolbachia sp. wRi] Length = 441 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 30/75 (40%), Positives = 46/75 (61%), Gaps = 2/75 (2%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I I+G N GKS+ N L ++ I + PGTTRD + I D +G L+ + DTAGIR Sbjct: 177 RIAIIGRPNVGKSTFLNGLLAENRLITSSEPGTTRDSVDITYDHDGELITLIDTAGIRRK 236 Query: 281 DDIVEKEGIKRTFLE 295 ++V +G++ F+E Sbjct: 237 ANVV--DGLESRFVE 249 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 21/36 (58%), Positives = 27/36 (75%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 KI I+G NAGKS+LFN L + A+V++IPG TRD Sbjct: 3 KIAIVGLPNAGKSTLFNRLVGRKAAVVSNIPGVTRD 38 >gi|122701619|emb|CAL88199.1| GTPase [Helicobacter pylori] Length = 170 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L + V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNSHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|30248179|ref|NP_840249.1| GTP-binding protein EngA [Nitrosomonas europaea ATCC 19718] gi|37999533|sp|Q82XU6|DER_NITEU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|30180064|emb|CAD84064.1| GTP-binding protein (HSR1-related):AAA ATPase superfamily [Nitrosomonas europaea ATCC 19718] Length = 467 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/97 (35%), Positives = 55/97 (56%), Gaps = 5/97 (5%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I G N GKS+L N L ++ I D PGTTRD + +D + + DTAG+R + Sbjct: 181 IAIAGRPNVGKSTLINTLLGEERVIAFDQPGTTRDSIYVDFEYGQRSYTLIDTAGLRRSG 240 Query: 282 DI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + VEK + +T +E A++++L+ +++ EIS Sbjct: 241 KVWETVEKFSVVKTLQSIEAANVVILV--LDAHHEIS 275 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 52/159 (32%), Positives = 77/159 (48%), Gaps = 30/159 (18%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID--LDLEGYLVKISDTAGIRE 279 +V++G N GKS+LFN L + AIV DIPG TRD L L+ YLV DT G Sbjct: 5 LVLVGRPNVGKSTLFNRLTRSRDAIVADIPGLTRDRHYGHGRLGLKPYLV--VDTGGF-- 60 Query: 280 TDDIVEKEGI-----KRTFLEVENADLILLL----------KEINSKKEISFPKNIDFIF 324 + V K GI K+T V+ AD++L + +I +++ + I + Sbjct: 61 --EPVVKSGILHAMAKQTLQAVDEADIVLFIVDGRQGLAAQDKIIAEQLRKTGQKIILVV 118 Query: 325 IGTKSDLYSTYTEEYDHL-------ISSFTGEGLEELIN 356 T+ YS+ T E+ L +S+ G+ L ELI+ Sbjct: 119 NKTEGMPYSSVTAEFHELGLGTPCAVSALHGDHLGELID 157 >gi|225873267|ref|YP_002754726.1| ribosome-associated GTPase EngA [Acidobacterium capsulatum ATCC 51196] gi|225793600|gb|ACO33690.1| ribosome-associated GTPase EngA [Acidobacterium capsulatum ATCC 51196] Length = 472 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 37/96 (38%), Positives = 54/96 (56%), Gaps = 3/96 (3%) Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272 GE + ++ I+G N GKS+L NAL AIV+ I GTTRD + ++ G ++I Sbjct: 194 GEYEQPETRVAIIGRPNVGKSTLLNALTGSSRAIVSPIAGTTRDAVDEVIEHNGQTLRIV 253 Query: 273 DTAGIR---ETDDIVEKEGIKRTFLEVENADLILLL 305 DTAGIR +T + EK + +E AD+ LL+ Sbjct: 254 DTAGIRRKGKTYLMAEKLSVVMARRHLEAADVALLV 289 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 30/95 (31%), Positives = 55/95 (57%), Gaps = 3/95 (3%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD- 282 I+G N GKS+LFN L + +IV D PG TRD + ++ G ++ DT GI D+ Sbjct: 6 IVGRPNVGKSTLFNRLTESRRSIVGDEPGITRDRIYGEVRWAGRTARLVDTGGIVPDDEA 65 Query: 283 IVEKEGIKRTFLEVENADLILLLKEINSKKEISFP 317 ++ E ++ + +E A+ I+++ ++ + E++ P Sbjct: 66 LIPAEIFRQARVALEEAEAIVMV--VDGRTELAAP 98 >gi|206891018|ref|YP_002249510.1| GTP-binding protein [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742956|gb|ACI22013.1| GTP-binding protein [Thermodesulfovibrio yellowstonii DSM 11347] Length = 423 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 52/171 (30%), Positives = 91/171 (53%), Gaps = 27/171 (15%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTAGIRE 279 I + G +NAGKSSL NAL + +AIV+D+PGTT D + +++ G +V I DTAGI + Sbjct: 11 IALFGRTNAGKSSLINALTGQSLAIVSDVPGTTTDPVAKAMEILPLGPVVLI-DTAGIDD 69 Query: 280 TDDIVEKEGIKRTFLEVENADLILLL-----------KEINSKKEISFPKNIDFIFIGTK 328 + E K+++ ++ DL+LL+ ++I K E + I++ K Sbjct: 70 VGKLGELRK-KKSYEVLDKTDLVLLVIDPEKGFGEFERDIVKKAEET---GTPLIYVVNK 125 Query: 329 SDLYSTYTE----EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375 D++ + E +S+ T EG+ EL ++I++N K +++P+ Sbjct: 126 IDIHPEAKKYELPEPKVFVSALTAEGIVEL---KQTIVNNAPKD--WTLPT 171 >gi|170723482|ref|YP_001751170.1| GTP-binding protein EngA [Pseudomonas putida W619] gi|229784138|sp|B1JDV4|DER_PSEPW RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|169761485|gb|ACA74801.1| small GTP-binding protein [Pseudomonas putida W619] Length = 487 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 3/92 (3%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 ++G KI I+G N GKS+L N + ++ +V D PGTTRD + I + + DTAG Sbjct: 190 KDGIKIAIIGRPNVGKSTLVNRMLGEERVVVYDQPGTTRDSIYIPFERDNEKYTFIDTAG 249 Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLL 305 +R+ I VEK + +T +++A++++ + Sbjct: 250 VRKRGKIHEEVEKFSVVKTLQAIKDANVVIFV 281 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS++FN L K AIV D+ G TRD D +G + DT GI + Sbjct: 5 IALVGRPNVGKSTMFNRLTKTRDAIVGDLSGLTRDRQYGDASWQGRSFILIDTGGITGDE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++++ +++ + +E AD +L L Sbjct: 65 VGMDEKMAEQSLMAIEEADYVLFL 88 >gi|122701365|emb|CAL88072.1| GTPase [Helicobacter pylori] Length = 170 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L + V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNSHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|121602708|ref|YP_988693.1| GTP-binding protein EngA [Bartonella bacilliformis KC583] gi|166224307|sp|A1URU0|DER_BARBK RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|120614885|gb|ABM45486.1| GTP-binding protein EngA [Bartonella bacilliformis KC583] Length = 473 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 1/90 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS+LFN L K +A+V D PG TRD + + DTAG+ E D Sbjct: 5 IAIVGRPNVGKSTLFNRLVGKKLALVDDKPGVTRDRRIHAARFQDLYFDVIDTAGLEEAD 64 Query: 282 D-IVEKEGIKRTFLEVENADLILLLKEINS 310 D +E +T + ++ ADLIL + + S Sbjct: 65 DHTLEGRMRSQTKVAIDEADLILFVLDAKS 94 Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 37/66 (56%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I I G N GKS+L N++ +D + G TRD ++ID + +K+ DTAG+R Sbjct: 205 RIAIAGRPNTGKSTLINSMLGQDRLLTGPEAGVTRDSISIDWEWRSRHIKLFDTAGLRRK 264 Query: 281 DDIVEK 286 I EK Sbjct: 265 SKIQEK 270 >gi|99034460|ref|ZP_01314456.1| hypothetical protein Wendoof_01000738 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 405 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 30/75 (40%), Positives = 46/75 (61%), Gaps = 2/75 (2%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I I+G N GKS+ N L ++ I + PGTTRD + I D +G L+ + DTAGIR Sbjct: 177 RIAIIGRPNVGKSTFLNGLLAENRLITSSEPGTTRDSVDITYDHDGELITLIDTAGIRRK 236 Query: 281 DDIVEKEGIKRTFLE 295 ++V +G++ F+E Sbjct: 237 ANVV--DGLESRFVE 249 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 21/36 (58%), Positives = 27/36 (75%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 KI I+G NAGKS+LFN L + A+V++IPG TRD Sbjct: 3 KIAIVGLPNAGKSTLFNRLVGRKAAVVSNIPGVTRD 38 >gi|237712743|ref|ZP_04543224.1| GTP-binding protein EngA [Bacteroides sp. D1] gi|262408120|ref|ZP_06084667.1| ribosome-associated GTPase EngA [Bacteroides sp. 2_1_22] gi|293369492|ref|ZP_06616071.1| ribosome-associated GTPase EngA [Bacteroides ovatus SD CMC 3f] gi|294644223|ref|ZP_06721993.1| ribosome-associated GTPase EngA [Bacteroides ovatus SD CC 2a] gi|294808599|ref|ZP_06767339.1| ribosome-associated GTPase EngA [Bacteroides xylanisolvens SD CC 1b] gi|298480163|ref|ZP_06998361.1| ribosome-associated GTPase EngA [Bacteroides sp. D22] gi|229447220|gb|EEO53011.1| GTP-binding protein EngA [Bacteroides sp. D1] gi|262353672|gb|EEZ02765.1| ribosome-associated GTPase EngA [Bacteroides sp. 2_1_22] gi|292635377|gb|EFF53890.1| ribosome-associated GTPase EngA [Bacteroides ovatus SD CMC 3f] gi|292640433|gb|EFF58681.1| ribosome-associated GTPase EngA [Bacteroides ovatus SD CC 2a] gi|294444198|gb|EFG12925.1| ribosome-associated GTPase EngA [Bacteroides xylanisolvens SD CC 1b] gi|295088054|emb|CBK69577.1| ribosome-associated GTPase EngA [Bacteroides xylanisolvens XB1A] gi|298273444|gb|EFI15007.1| ribosome-associated GTPase EngA [Bacteroides sp. D22] Length = 437 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 53/168 (31%), Positives = 79/168 (47%), Gaps = 22/168 (13%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277 G + I+G N GKS+LFN L K AIV + GTTRD + G + DT G + Sbjct: 2 GNLVAIVGRPNVGKSTLFNRLTKTRQAIVNEEAGTTRDRQYGKSEWLGREFSVVDTGGWV 61 Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEI-NSKKEISFP-------KNIDFIFIGTKS 329 +DD+ E+E K+ L V+ AD+IL + ++ N ++ N I + K+ Sbjct: 62 VNSDDVFEEEIRKQVLLAVDEADVILFVVDVMNGVTDLDMQVAAILRRANSPVIMVANKT 121 Query: 330 ---DLYSTYTEEYD------HLISSFTGEGLEELINKIKSILSNKFKK 368 DL E Y + +S+ TG G +L++ I S FKK Sbjct: 122 DNHDLQYNAPEFYKLGLGDPYCVSAMTGSGTGDLMDLIVS----NFKK 165 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G NAGKSS+ NA ++ IVT+I GTTRD + + G+ + DTAGIR+ Sbjct: 177 RFAVVGRPNAGKSSIVNAFIGEERNIVTEIAGTTRDSIYTRYNKFGFDFYLVDTAGIRKK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + + +E + R+ +E +D+ +L+ Sbjct: 237 NKVNEDLEYYSVIRSIRAIEGSDVCILM 264 >gi|1813480|gb|AAB41682.1| putative GTPase [Campylobacter jejuni] Length = 383 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 54/85 (63%), Gaps = 3/85 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I+++G N GKSSLFN +A++ +AI +DI GTTRD + + + D+ G+ E+D Sbjct: 4 IILIGKPNVGKSSLFNRMARQRIAITSDISGTTRDTNKTQIHIHSKKAMLIDSGGLDESD 63 Query: 282 DIVEKEGIKRTFLEV-ENADLILLL 305 ++ + +K+ L+V + +D+IL L Sbjct: 64 ELF--KNVKKNTLKVAKESDIILYL 86 Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 45/144 (31%), Positives = 74/144 (51%), Gaps = 27/144 (18%) Query: 154 LSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGK-- 211 L LY +W++K H F+ D EEE++++F H +GK Sbjct: 149 LDELY-EWLEKFLH-EEFLIPD----EEENLEDFLE----------------HYEEGKEF 186 Query: 212 -LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270 E+ +N ++ I+G N GKSSL NAL K++ ++V+ I GTT D + + + +++ Sbjct: 187 QFKEVDQNHIRVGIVGRVNVGKSSLLNALVKQERSVVSSIAGTTIDPVNESVVHKDKVIE 246 Query: 271 ISDTAGIRETDDI--VEKEGIKRT 292 DTAGIR+ I +E+ + RT Sbjct: 247 FVDTAGIRKRGKIQGLERFALNRT 270 >gi|85860147|ref|YP_462349.1| GTP-binding protein EngA [Syntrophus aciditrophicus SB] gi|85723238|gb|ABC78181.1| GTP-binding protein [Syntrophus aciditrophicus SB] Length = 447 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280 + I+G N GKS+LFN L++K AIV D+PG TRD D G + DT G + Sbjct: 7 VAIVGRPNVGKSTLFNRLSQKSKAIVIDVPGATRDRNYADCTWHGRRYTLIDTGGFEPAS 66 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 + + + ++T L +E AD+I+ L Sbjct: 67 TETILIQMREQTHLAIEEADIIIFL 91 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I ++G N GKSSL N + + I PGTTRD + + +G+ + DTAGIR+ Sbjct: 183 RIALIGKPNVGKSSLLNKILGYERTIANPTPGTTRDAIDTPFEFDGHRYLLIDTAGIRKK 242 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 I +EK + + ++ D+ LLL Sbjct: 243 SRISLSLEKYSVIQALKTLDRCDIALLL 270 >gi|30682040|ref|NP_187815.2| emb2738 (embryo defective 2738); GTP binding [Arabidopsis thaliana] gi|209529777|gb|ACI49783.1| At3g12080 [Arabidopsis thaliana] gi|332641625|gb|AEE75146.1| GTP-binding protein [Arabidopsis thaliana] Length = 663 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 7/93 (7%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAGIRET 280 I I+G N GKSS+ NAL ++D IV+ + GTTRD + + +G ++ DTAGIR+ Sbjct: 371 IAIIGRPNVGKSSILNALVREDRTIVSPVSGTTRDAIDAEFTGPDGEKFRLIDTAGIRKK 430 Query: 281 DDIV------EKEGIKRTFLEVENADLILLLKE 307 + E + R F + +D++ L+ E Sbjct: 431 SSVASSGSTTEAMSVNRAFRAIRRSDVVALVIE 463 Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust. Identities = 20/38 (52%), Positives = 26/38 (68%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 ++ I+G N GKS+LFN L ++ AIV D PG TRD L Sbjct: 160 RVAIVGRPNVGKSALFNRLVGENRAIVVDEPGVTRDRL 197 >gi|322373918|ref|ZP_08048453.1| ribosome-associated GTPase EngA [Streptococcus sp. C150] gi|321277290|gb|EFX54360.1| ribosome-associated GTPase EngA [Streptococcus sp. C150] Length = 436 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/145 (29%), Positives = 74/145 (51%), Gaps = 31/145 (21%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID-LDLEGYLVKISDTAGIRETDD 282 ++G N GKSSL NA+ +D I + I GTTRD + + +D EG + DTAG+R++ Sbjct: 179 LIGRPNVGKSSLINAILGEDRVIASPIAGTTRDAIDTNFVDSEGQEYTMIDTAGMRKSGK 238 Query: 283 I---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY 339 + EK + R+ ++ +D++L++ IN+++ I EY Sbjct: 239 VYENTEKYSVMRSMRAIDRSDIVLMV--INAEEGI----------------------REY 274 Query: 340 DHLISSF---TGEGLEELINKIKSI 361 D I+ F G+G+ ++NK +I Sbjct: 275 DKRIAGFAHEAGKGIIIVVNKWDTI 299 Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 45/84 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN +A + ++IV D+ G TRD + + + DT GI + D Sbjct: 6 VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTSAEWLNRQFSLIDTGGIDDVD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + + + AD+I+ + Sbjct: 66 APFMEQIKHQADIAMTEADVIVFV 89 >gi|319943736|ref|ZP_08018017.1| GTP-binding protein EngA [Lautropia mirabilis ATCC 51599] gi|319742969|gb|EFV95375.1| GTP-binding protein EngA [Lautropia mirabilis ATCC 51599] Length = 504 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 52/92 (56%), Gaps = 3/92 (3%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R ++ ++G N GKS+L NAL ++ I + PGTTRD +T+D ++ DTAG Sbjct: 235 RKPVRVAVVGRPNGGKSTLINALLGEERLIAFNQPGTTRDSITVDFRYRNRDYQLIDTAG 294 Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLL 305 +R + VEK + +T +E+ ++ +L+ Sbjct: 295 LRRRGKVHETVEKFSVVKTLQAIEDCNVAVLM 326 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L + A+V +IPG TRD L+G V + DT G Sbjct: 8 IALVGRPNVGKSTLFNRLTRSRDALVANIPGLTRDRHYGSATLDGQRVVLIDTGGFEPVA 67 Query: 282 DI-VEKEGIKRTFLEVENADLILLL 305 V ++ ++T V AD+++ + Sbjct: 68 ATGVAEQMARQTRQAVIEADVVVFV 92 >gi|225018722|ref|ZP_03707914.1| hypothetical protein CLOSTMETH_02672 [Clostridium methylpentosum DSM 5476] gi|224948450|gb|EEG29659.1| hypothetical protein CLOSTMETH_02672 [Clostridium methylpentosum DSM 5476] Length = 440 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/89 (40%), Positives = 53/89 (59%), Gaps = 5/89 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRE 279 K+ I+G N GKSSL N +A ++ IV+DI GTTRD + T+ E V I DTAGIR Sbjct: 179 KVAIVGKPNVGKSSLINKIAGEERVIVSDIAGTTRDAVDTVVTRGEDQFVLI-DTAGIRR 237 Query: 280 TD---DIVEKEGIKRTFLEVENADLILLL 305 D +E+ + R + V+ AD+ +++ Sbjct: 238 KSKVLDTIERYSVLRAHMAVDRADVCVII 266 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 28/88 (31%), Positives = 53/88 (60%), Gaps = 1/88 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + ++G N GKS+LFN L + ++IV D PG TRD + + + + DT GI E+ Sbjct: 6 VAVVGRPNVGKSTLFNKLIGRRMSIVDDTPGVTRDRIYSECEWCSRPFLLVDTGGIEPES 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308 +DI+ + ++ L +++A +I+L+ ++ Sbjct: 66 NDIILSQMRRQAELAIQSAQVIILVTDL 93 >gi|188583713|ref|YP_001927158.1| GTP-binding protein EngA [Methylobacterium populi BJ001] gi|179347211|gb|ACB82623.1| small GTP-binding protein [Methylobacterium populi BJ001] Length = 446 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 52/90 (57%), Gaps = 3/90 (3%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G ++ I+G NAGKS+L N + +D +V G TRD +++D + G +K+ DTAG+R Sbjct: 179 GLRVAIVGRPNAGKSTLINRMIGEDRLLVGPEAGITRDSISLDWEWRGRRIKLHDTAGMR 238 Query: 279 ET---DDIVEKEGIKRTFLEVENADLILLL 305 DD +EK + V A+++++L Sbjct: 239 RRARIDDKLEKLAVSDGLRAVRFAEVVVVL 268 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 8/64 (12%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL----VKISDTAGI 277 + I+G N GKS+LFN L + +A+V D PG TRD + EG++ ++ DTAG+ Sbjct: 6 VAIVGRPNVGKSTLFNRLVGRKLALVDDRPGVTRD----RREGEGFIGDVAFRVIDTAGL 61 Query: 278 RETD 281 E D Sbjct: 62 EEAD 65 >gi|86358709|ref|YP_470601.1| GTP-binding protein EngA [Rhizobium etli CFN 42] gi|123511179|sp|Q2K5L2|DER_RHIEC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|86282811|gb|ABC91874.1| GTP-binding protein [Rhizobium etli CFN 42] Length = 473 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/87 (39%), Positives = 48/87 (55%), Gaps = 1/87 (1%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 + + I+G N GKS+LFN L K +A+V D PG TRD D L G I DTAG+ E Sbjct: 3 FTVAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGDARLMGLTFTIIDTAGLEE 62 Query: 280 TD-DIVEKEGIKRTFLEVENADLILLL 305 D + ++ +T ++ ADL L + Sbjct: 63 ADEESLQGRMRAQTEAAIDEADLSLFV 89 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 38/66 (57%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G NAGKS+L N +D + G TRD ++++ D G +K+ DTAG+R Sbjct: 204 RVAIVGRPNAGKSTLINRFLGEDRLLTGPEAGITRDSISVEWDWRGRTIKMFDTAGMRRK 263 Query: 281 DDIVEK 286 + EK Sbjct: 264 ARVTEK 269 >gi|116627238|ref|YP_819857.1| GTP-binding protein EngA [Streptococcus thermophilus LMD-9] gi|122268159|sp|Q03MB1|DER_STRTD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|116100515|gb|ABJ65661.1| Predicted GTPase [Streptococcus thermophilus LMD-9] Length = 436 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/145 (29%), Positives = 74/145 (51%), Gaps = 31/145 (21%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID-LDLEGYLVKISDTAGIRETDD 282 ++G N GKSSL NA+ +D I + I GTTRD + + +D EG + DTAG+R++ Sbjct: 179 LIGRPNVGKSSLINAILGEDRVIASPIAGTTRDAIDTNFVDSEGQEYTMIDTAGMRKSGK 238 Query: 283 I---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY 339 + EK + R+ ++ +D++L++ IN+++ I EY Sbjct: 239 VYENTEKYSVMRSMRAIDRSDVVLMV--INAEEGI----------------------REY 274 Query: 340 DHLISSF---TGEGLEELINKIKSI 361 D I+ F G+G+ ++NK +I Sbjct: 275 DKRIAGFAHEAGKGIIIVVNKWDTI 299 Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 45/84 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN +A + ++IV D+ G TRD + + + DT GI + D Sbjct: 6 VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTSAEWLNRQFSLIDTGGIDDVD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + + + AD+I+ + Sbjct: 66 APFMEQIKHQAGIAMTEADVIVFV 89 >gi|330719101|ref|ZP_08313701.1| GTP-binding protein Der [Leuconostoc fallax KCTC 3537] Length = 436 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 49/84 (58%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN +A + +AIV D+PG TRD L D Y KI DT GI + Sbjct: 6 VAIVGRPNVGKSTIFNRMAGERIAIVEDLPGVTRDRLYASADWLNYDFKIIDTGGIEIGN 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + E + + +E AD+I+++ Sbjct: 66 EPFLSEIRGQVEIALEEADVIVMV 89 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 52/92 (56%), Gaps = 4/92 (4%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID-LDLEGYLVKISDTAG 276 + + I+G N GKSS+ NA+ ++ IV+DI GTTRD + + +G + DTAG Sbjct: 173 DAIRFSIIGRPNVGKSSIVNAILGEERVIVSDIEGTTRDAIDSRFMTADGDEFVMVDTAG 232 Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLL 305 +R+ + EK + R V+ +++IL++ Sbjct: 233 MRKRGKVYENTEKYSVLRALKAVDESNVILMV 264 >gi|288818845|ref|YP_003433193.1| GTP-binding protein [Hydrogenobacter thermophilus TK-6] gi|288788245|dbj|BAI69992.1| GTP-binding protein [Hydrogenobacter thermophilus TK-6] gi|308752432|gb|ADO45915.1| ribosome-associated GTPase EngA [Hydrogenobacter thermophilus TK-6] Length = 432 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 32/95 (33%), Positives = 55/95 (57%), Gaps = 3/95 (3%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 +G K+ +G N GKSSL NA+ + IV+++ GTTRD + + + +G + DTAGI Sbjct: 172 SGIKVSFVGRPNVGKSSLINAILGSERVIVSEVAGTTRDAVEVPFEYKGKEFVLIDTAGI 231 Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLLKEIN 309 R + VE + R+ +E +D++ L+ +I+ Sbjct: 232 RRRPKVEYGVEFFAVGRSIKAIEMSDVVCLVLDIS 266 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/171 (24%), Positives = 85/171 (49%), Gaps = 21/171 (12%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +++I+G N GKS+LFN + + +IV IPG TRD++ + + ++DT GI E Sbjct: 4 QVLIVGRPNVGKSTLFNRIVGRRKSIVHGIPGVTRDIIESEASWKDKKFMVADTGGIFEG 63 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS----------FPKNIDFIFIGTKSD 330 + + ++ K+ + A +IL + ++ ++ I+ +P + K D Sbjct: 64 GEEMSEKVEKQVKKALSEAQVILFV--VDGREGITAGDEYIARMLYPYREKVFLVVNKID 121 Query: 331 -------LYSTYTEEYDHL--ISSFTGEGLEELINKIKSILSNKFKKLPFS 372 +Y Y ++ + +S+ G G+ EL++ + S+L ++ KL +S Sbjct: 122 SEKLQKNVYDFYALGFEKVFPVSAQHGIGVAELLDALHSLLPDEPVKLEYS 172 >gi|284040067|ref|YP_003389997.1| ribosome-associated GTPase EngA [Spirosoma linguale DSM 74] gi|283819360|gb|ADB41198.1| ribosome-associated GTPase EngA [Spirosoma linguale DSM 74] Length = 435 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 +I ILG N GKSS N L ++ +IVT+I GTTRD + G ++DTAGIR Sbjct: 177 RIAILGRPNVGKSSFLNVLTGQERSIVTNIAGTTRDAINTRYKAYGKDFILTDTAGIRRK 236 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305 D +E + R+ +E++D+ ++L Sbjct: 237 ARVDSNIEFYSVLRSIKAMEDSDVCIIL 264 Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust. Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 + I+G N GKS+LFN L ++ AI+ + G TRD + + DT G + + Sbjct: 5 VAIVGRPNVGKSTLFNRLTEQRQAIMDNQSGVTRDRHYGTAEWNDKYFTVIDTGGYVVGS 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 +D+ E+ ++ + ++ + L+L + Sbjct: 65 EDVFEESIREQVEMAIQESTLLLFV 89 >gi|164686350|ref|ZP_02210380.1| hypothetical protein CLOBAR_02788 [Clostridium bartlettii DSM 16795] gi|164601952|gb|EDQ95417.1| hypothetical protein CLOBAR_02788 [Clostridium bartlettii DSM 16795] Length = 450 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I G NAGKSS+ N + ++ IV+ I GTTRD + + +G + DTAGIR Sbjct: 188 RVAITGKPNAGKSSILNNILGENRVIVSPIAGTTRDAIDTYFEKDGQQYLLIDTAGIRRK 247 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + VEK + R+ VE AD++L++ Sbjct: 248 SKVYERVEKFSVIRSMSAVERADVVLIV 275 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RET 280 + ++G N GKS+LFN LA K ++IV D PG TRD + +++ + DT GI ++ Sbjct: 16 VAVVGRPNVGKSTLFNKLAGKRISIVEDTPGVTRDRIFAEVEWLNKYFTLIDTGGIEKDN 75 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 D++ + + L V+ A +I+ + Sbjct: 76 GDVILSQMRNQAMLAVDMAHIIIFV 100 >gi|313888319|ref|ZP_07821990.1| ribosome biogenesis GTPase Der [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845722|gb|EFR33112.1| ribosome biogenesis GTPase Der [Peptoniphilus harei ACS-146-V-Sch2b] Length = 446 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 53/88 (60%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ ++G N GKSSL N L ++ +IVT+IPGTTRD + + +G DTAG+R+ Sbjct: 177 RVTLIGKPNVGKSSLLNYLTGENRSIVTNIPGTTRDSIDSLIKYKGNEYIFVDTAGLRKK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 I VE+ + RT +E +++ +L+ Sbjct: 237 KKIVPGVERYSVIRTLTAIERSNVCVLM 264 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS+LFN + + V+I D PG TRD + Y + DT G+ D Sbjct: 6 ISIIGRPNVGKSTLFNKIVGRKVSITEDTPGVTRDRIYQPATWLNYKFLLVDTGGLDLKD 65 Query: 282 DIVEKEGIKRTF-LEVENADLILLL 305 + + IK + +E +D+++ + Sbjct: 66 EDIFMSSIKAQIDIALETSDVVIFV 90 >gi|297617742|ref|YP_003702901.1| small GTP-binding protein [Syntrophothermus lipocalidus DSM 12680] gi|297145579|gb|ADI02336.1| small GTP-binding protein [Syntrophothermus lipocalidus DSM 12680] Length = 416 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 82/166 (49%), Gaps = 20/166 (12%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAGIRET 280 I I G N GKSSL NAL +D+A+V+ + GTT D + ++ L V+I DTAGI + Sbjct: 13 IAIFGRRNVGKSSLINALTNQDIALVSPMAGTTTDPVYKAMEILPIGPVEIIDTAGI-DD 71 Query: 281 DDIVEKEGIKRTFLEVENADLILL-------LKEINSK-KEISFPKNIDFIFIGTKSD-- 330 + + + IK+T + DL +L + E ++ KE KNI +F +K+D Sbjct: 72 EGFLGQLRIKKTMEVLNKTDLAVLVIDPVLGVGEFETRLKETIEKKNIPIVFAASKADTP 131 Query: 331 -----LYSTYTEEYDHLI---SSFTGEGLEELINKIKSILSNKFKK 368 T+ E I SS T GLEEL ++ +F++ Sbjct: 132 EFSLETVKTWEEVLGKPIIPVSSLTRSGLEELKQQMIKAAPRQFEE 177 >gi|110639446|ref|YP_679655.1| GTP-binding protein EngA [Cytophaga hutchinsonii ATCC 33406] gi|123354325|sp|Q11QK1|DER_CYTH3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|110282127|gb|ABG60313.1| GTP-binding protein [Cytophaga hutchinsonii ATCC 33406] Length = 435 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/88 (40%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I +LG NAGKSS NAL + +IVTD GTTRD +T ++ G DTAGIR+ Sbjct: 177 RIAVLGRPNAGKSSYVNALLGTNRSIVTDQAGTTRDSITSHYNVFGKEFIFVDTAGIRKK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 I VE I R+ +E +D+ +++ Sbjct: 237 SRIKEDVEYYSILRSVKALEESDVCVIM 264 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 + I+G N GKS+ FN L +AI+ D G TRD + + G + DT G + + Sbjct: 5 VAIVGRPNVGKSTFFNRLVGARIAIMDDESGVTRDRHYGEAEWCGKFFTVIDTGGYVTGS 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 DDI E + + + ++ AD+IL L Sbjct: 65 DDIFEGQIRDQVDIAIDEADVILFL 89 >gi|297545446|ref|YP_003677748.1| small GTP-binding protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296843221|gb|ADH61737.1| small GTP-binding protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 408 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 49/127 (38%), Positives = 71/127 (55%), Gaps = 13/127 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAGIRET 280 I I G NAGKSSL NAL ++VA+V+D+ GTT D ++ ++ L V I DTAG+ +T Sbjct: 12 IAIFGRRNAGKSSLINALTNQEVALVSDVAGTTTDPVSKAMEILPIGPVVIIDTAGLDDT 71 Query: 281 DDIVEKEGIKRTFLEVENADLILLLK---------EINSKKEISFPKNIDFIFIGTKSDL 331 ++ E +K+T+ + DL +L+ E N K I KNI + + K DL Sbjct: 72 GELGELR-VKKTYEVLNRTDLAILVIDGTIGLSEFEENVLKVIR-DKNIPVVGVINKKDL 129 Query: 332 YSTYTEE 338 S Y+EE Sbjct: 130 -SQYSEE 135 >gi|71894165|ref|YP_278273.1| GTP-binding protein EngA [Mycoplasma synoviae 53] Length = 438 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 31/70 (44%), Positives = 44/70 (62%) Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 + N +K+ I+G NAGKSSL N L + +IV++IPGTTRD + L ++ +I DTA Sbjct: 169 LENNFKLSIIGKPNAGKSSLLNKLTNEYRSIVSEIPGTTRDSVKSFLKIKDQNFEIIDTA 228 Query: 276 GIRETDDIVE 285 GI +VE Sbjct: 229 GIMRKSKLVE 238 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS+LFN L + ++IV D PG TRD L + +KI DT GI + Sbjct: 8 IAIIGKPNVGKSTLFNRLNGRKISIVDDTPGVTRDRLYEVISWLNKEIKIIDTGGIEIKN 67 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 +++ + + +E AD+I + Sbjct: 68 APFQEQIQIQAKIAIEEADVIFFV 91 >gi|327189207|gb|EGE56387.1| GTP-binding protein [Rhizobium etli CNPAF512] Length = 473 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/87 (39%), Positives = 48/87 (55%), Gaps = 1/87 (1%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 + + I+G N GKS+LFN L K +A+V D PG TRD D L G I DTAG+ E Sbjct: 3 FTVAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGDARLMGLTFTIIDTAGLEE 62 Query: 280 TD-DIVEKEGIKRTFLEVENADLILLL 305 D + ++ +T ++ ADL L + Sbjct: 63 ADEESLQGRMRAQTEAAIDEADLSLFV 89 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 38/66 (57%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G NAGKS+L N +D + G TRD ++++ D G +K+ DTAG+R Sbjct: 204 RVAIVGRPNAGKSTLINRFLGEDRLLTGPEAGITRDSISVEWDWRGRTIKMFDTAGMRRK 263 Query: 281 DDIVEK 286 + EK Sbjct: 264 ARVTEK 269 >gi|122702787|emb|CAL88583.1| GTPase [Helicobacter pylori] Length = 170 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-G 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|122701339|emb|CAL88059.1| GTPase [Helicobacter pylori] Length = 170 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-G 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 TLLSKEIKALNLKAAQMSDLIL 90 >gi|290993400|ref|XP_002679321.1| [Fe] hydrogenase maturation protein [Naegleria gruberi] gi|284092937|gb|EFC46577.1| [Fe] hydrogenase maturation protein [Naegleria gruberi] Length = 543 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 60/114 (52%), Gaps = 2/114 (1%) Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252 +N + +S S +G I I I+G N+GKS+L N L + +IV PG Sbjct: 60 MNSKQLFHSGVSLSDSANNIGSIYIERTNIAIVGAMNSGKSTLMNCLTNSNTSIVDSTPG 119 Query: 253 TTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 TT DV ++L G K+ DT G E D+ EK+ ++T + ++ +D+++++ Sbjct: 120 TTADVKMTTMELHGIGPTKLFDTPGTDEASDLGEKKR-QKTLIALKESDIVVVV 172 >gi|209550425|ref|YP_002282342.1| GTP-binding protein EngA [Rhizobium leguminosarum bv. trifolii WSM2304] gi|238058977|sp|B5ZYX3|DER_RHILW RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|209536181|gb|ACI56116.1| small GTP-binding protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 473 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/87 (39%), Positives = 48/87 (55%), Gaps = 1/87 (1%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 + + I+G N GKS+LFN L K +A+V D PG TRD D L G I DTAG+ E Sbjct: 3 FTVAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGDARLMGLTFTIIDTAGLEE 62 Query: 280 TD-DIVEKEGIKRTFLEVENADLILLL 305 D + ++ +T ++ ADL L + Sbjct: 63 ADEESLQGRMRAQTEAAIDEADLSLFV 89 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 38/66 (57%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G NAGKS+L N +D + G TRD ++++ D G +K+ DTAG+R Sbjct: 204 RVAIVGRPNAGKSTLINRFLGEDRLLTGPEAGITRDSISVEWDWRGRTIKMFDTAGMRRK 263 Query: 281 DDIVEK 286 + EK Sbjct: 264 ARVTEK 269 >gi|218961273|ref|YP_001741048.1| Fe-hydrogenase assembly protein (C-terminal fragment); GTPase activity domain [Candidatus Cloacamonas acidaminovorans] gi|167729930|emb|CAO80842.1| Fe-hydrogenase assembly protein (C-terminal fragment); GTPase activity domain [Candidatus Cloacamonas acidaminovorans] Length = 405 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 57/168 (33%), Positives = 79/168 (47%), Gaps = 27/168 (16%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280 I I+G NAGKSSL NAL +D+AIV+ +PGTT D + +L V DTAG+ +T Sbjct: 12 IAIIGKRNAGKSSLINALVGQDIAIVSAVPGTTTDPVDKRYELLPLGPVTFFDTAGVDDT 71 Query: 281 DDIVEKEGIKRTFLEVENADLILL-----------LKEINSKKEISFPKNIDFIFIGTKS 329 ++ EK IK T + AD+ + LK I +E+ P I F K Sbjct: 72 GELGEKR-IKATQKILYRADIAIFVSDGNAFNNAELKMIEKIREMELPMLIVF----NKK 126 Query: 330 DLYSTYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKK 368 D+ E +SS T EG++E K+ LS K+ K Sbjct: 127 DIIPVCQENIAFCQKYSLPYISVSSVTKEGIDECKEKLIQ-LSPKYLK 173 >gi|297829768|ref|XP_002882766.1| EMB2738 [Arabidopsis lyrata subsp. lyrata] gi|297328606|gb|EFH59025.1| EMB2738 [Arabidopsis lyrata subsp. lyrata] Length = 661 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 7/93 (7%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAGIRET 280 I I+G N GKSS+ NAL ++D IV+ + GTTRD + + +G ++ DTAGIR+ Sbjct: 369 IAIIGRPNVGKSSILNALVREDRTIVSPVSGTTRDAIDAEFTGPDGEKFRLIDTAGIRKK 428 Query: 281 DDIV------EKEGIKRTFLEVENADLILLLKE 307 + E + R F + +D++ L+ E Sbjct: 429 SSVASSGSTTEAMSVNRAFRAIRRSDVVALVIE 461 Score = 44.3 bits (103), Expect = 0.036, Method: Compositional matrix adjust. Identities = 20/38 (52%), Positives = 26/38 (68%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 ++ I+G N GKS+LFN L ++ AIV D PG TRD L Sbjct: 158 RVAIVGRPNVGKSALFNRLVGENRAIVVDEPGVTRDRL 195 >gi|163853441|ref|YP_001641484.1| small GTP-binding protein [Methylobacterium extorquens PA1] gi|218532301|ref|YP_002423117.1| GTP-binding protein EngA [Methylobacterium chloromethanicum CM4] gi|240140861|ref|YP_002965341.1| GTP-binding protein EngA, GTPase [Methylobacterium extorquens AM1] gi|254563370|ref|YP_003070465.1| GTP-binding protein EngA, GTPase [Methylobacterium extorquens DM4] gi|163665046|gb|ABY32413.1| small GTP-binding protein [Methylobacterium extorquens PA1] gi|218524604|gb|ACK85189.1| small GTP-binding protein [Methylobacterium chloromethanicum CM4] gi|240010838|gb|ACS42064.1| GTP-binding protein EngA, GTPase [Methylobacterium extorquens AM1] gi|254270648|emb|CAX26652.1| GTP-binding protein EngA, GTPase [Methylobacterium extorquens DM4] Length = 446 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 52/90 (57%), Gaps = 3/90 (3%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G ++ I+G NAGKS+L N + +D +V G TRD +++D + G +K+ DTAG+R Sbjct: 179 GLRVAIVGRPNAGKSTLINRMIGEDRLLVGPEAGITRDSISLDWEWRGRRIKLHDTAGMR 238 Query: 279 ET---DDIVEKEGIKRTFLEVENADLILLL 305 DD +EK + V A+++++L Sbjct: 239 RRARIDDKLEKLAVSDGLRAVRFAEVVVVL 268 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 76/166 (45%), Gaps = 32/166 (19%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL----VKISDTAGI 277 + I+G N GKS+LFN L + +A+V D PG TRD + EG++ ++ DTAG+ Sbjct: 6 VAIVGRPNVGKSTLFNRLVGRKLALVDDRPGVTRD----RREGEGFIGDVAFRVIDTAGL 61 Query: 278 RETD-DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF-----------IFI 325 E D D + +T + AD +L + I+++ + P + F I I Sbjct: 62 EEADADSLLGRMRAQTEAAILEADAVLFV--IDARAGV-LPSDRPFAELVRRSGCPVILI 118 Query: 326 GTKSDLYSTYTEEYDHL---------ISSFTGEGLEELINKIKSIL 362 K++ + YD S+ GEGL L + ++ +L Sbjct: 119 ANKAEGGAGMAGAYDAFSLGLGDPIPFSAEHGEGLGSLQDALREVL 164 >gi|94971659|ref|YP_593707.1| GTP-binding protein EngA [Candidatus Koribacter versatilis Ellin345] gi|94553709|gb|ABF43633.1| Small GTP-binding protein [Candidatus Koribacter versatilis Ellin345] Length = 511 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/102 (35%), Positives = 61/102 (59%), Gaps = 4/102 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS+LFN L + AIV D PG TRD L + G +++ DT GI D Sbjct: 17 IAIVGRPNVGKSTLFNRLVGQRRAIVGDEPGITRDRLYGYSEWAGKRLRVVDTGGIVPDD 76 Query: 282 D-IVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF 322 + ++ E ++ + +E AD+I+++ ++++ E++ P +ID Sbjct: 77 EALIPAEIFRQAKVALEEADVIVMV--VDARTELASP-DIDL 115 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 KI I+G N GKS++ N L AIV+ I GTTRD + ++ +G + + DTAGIR Sbjct: 241 KIAIIGRPNVGKSTMLNRLTGTARAIVSPIAGTTRDAVDEVVERDGQIFRFIDTAGIRRK 300 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305 +T + EK + +E ADL L+L Sbjct: 301 GKTRLMAEKLSVVMARKHLEAADLALVL 328 >gi|40062766|gb|AAR37660.1| GTP-binding protein, Era/TrmE family [uncultured marine bacterium 439] Length = 463 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 3/90 (3%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G + +LG N GKS+L N + ++ + DIPGTTRD + I EG + DTAGIR Sbjct: 176 GIAVAVLGRPNVGKSTLINRILGEERVLAIDIPGTTRDTIFIPFTREGEQYTLIDTAGIR 235 Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLL 305 + VEK I + +E++ +++L+ Sbjct: 236 RKRSVEEKVEKFSIIKAIEALEDSHVVILV 265 Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 3/86 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD--VLTIDLDLEGYLVKISDTAGIRE 279 I ++G N GKS+LFN L+ A+V+D G TRD T+ LD E + I DT G+ Sbjct: 6 ISLVGRPNVGKSTLFNRLSNSRQALVSDFEGLTRDRQYATVQLDDE-TMCSIIDTGGLTN 64 Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305 D +++ ++ ++ +D+I + Sbjct: 65 EDSLIDTGIHEQVLSALDESDVIFFI 90 >gi|22537760|ref|NP_688611.1| GTP-binding protein EngA [Streptococcus agalactiae 2603V/R] gi|76788647|ref|YP_330237.1| GTP-binding protein EngA [Streptococcus agalactiae A909] gi|76798461|ref|ZP_00780699.1| GTP-binding protein engA [Streptococcus agalactiae 18RS21] gi|77408494|ref|ZP_00785232.1| GTP-binding protein, Era/ThdF family [Streptococcus agalactiae COH1] gi|77411928|ref|ZP_00788259.1| GTP-binding protein, Era/ThdF family [Streptococcus agalactiae CJB111] gi|41017044|sp|Q8DY73|DER_STRA5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|123601399|sp|Q3JZR6|DER_STRA1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|22534651|gb|AAN00484.1|AE014265_13 phosphoglycerate dehydrogenase-related protein [Streptococcus agalactiae 2603V/R] gi|76563704|gb|ABA46288.1| GTP-binding protein EngA, putative [Streptococcus agalactiae A909] gi|76586195|gb|EAO62715.1| GTP-binding protein engA [Streptococcus agalactiae 18RS21] gi|77162025|gb|EAO73005.1| GTP-binding protein, Era/ThdF family [Streptococcus agalactiae CJB111] gi|77172936|gb|EAO76067.1| GTP-binding protein, Era/ThdF family [Streptococcus agalactiae COH1] Length = 436 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 75/145 (51%), Gaps = 31/145 (21%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID-LDLEGYLVKISDTAGIRETDD 282 ++G N GKSSL NA+ +D I + + GTTRD + + +D +G + DTAG+R++ Sbjct: 179 LIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTNFVDSQGQEYTMIDTAGMRKSGK 238 Query: 283 I---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY 339 + EK + R+ ++ +D++L++ IN+++ I EY Sbjct: 239 VYENTEKYSVMRSMRAIDRSDVVLMV--INAEEGI----------------------REY 274 Query: 340 DHLISSF---TGEGLEELINKIKSI 361 D I+ F TG+G+ ++NK +I Sbjct: 275 DKRIAGFAHETGKGIIIVVNKWDTI 299 Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 45/84 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN +A + ++IV D+ G TRD + + + DT GI + D Sbjct: 6 VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTTGEWLNRKFSLIDTGGIDDVD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + + + AD+I+ + Sbjct: 66 APFMEQIKHQADIAMTEADVIVFV 89 >gi|291546330|emb|CBL19438.1| ribosome-associated GTPase EngA [Ruminococcus sp. SR1/5] Length = 441 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 52/88 (59%), Gaps = 1/88 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFNALA +++IV D PG TRD + D+ + DT GI ++ Sbjct: 6 VAIVGRPNVGKSTLFNALAGDNISIVKDTPGVTRDRIYADVTWLDRTFTLIDTGGIEPDS 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308 DI+ ++ + ++ AD+I+ + ++ Sbjct: 66 SDIILSRMREQAQIAIDTADVIIFITDV 93 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 32/83 (38%), Positives = 44/83 (53%), Gaps = 3/83 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI I+G N GKSSL N L ++ IV++I GTTRD + + DTAG+R Sbjct: 179 KIAIVGKPNVGKSSLINKLLGEERVIVSNIAGTTRDAIDTKVTWNKKDYIFIDTAGLRRK 238 Query: 281 DDI---VEKEGIKRTFLEVENAD 300 + +E+ + RT VE AD Sbjct: 239 GKVKEEIERYSVIRTVTAVERAD 261 >gi|144574977|gb|AAZ43562.2| GTP-binding protein EngA [Mycoplasma synoviae 53] Length = 435 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 31/70 (44%), Positives = 44/70 (62%) Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 + N +K+ I+G NAGKSSL N L + +IV++IPGTTRD + L ++ +I DTA Sbjct: 166 LENNFKLSIIGKPNAGKSSLLNKLTNEYRSIVSEIPGTTRDSVKSFLKIKDQNFEIIDTA 225 Query: 276 GIRETDDIVE 285 GI +VE Sbjct: 226 GIMRKSKLVE 235 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS+LFN L + ++IV D PG TRD L + +KI DT GI + Sbjct: 5 IAIIGKPNVGKSTLFNRLNGRKISIVDDTPGVTRDRLYEVISWLNKEIKIIDTGGIEIKN 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 +++ + + +E AD+I + Sbjct: 65 APFQEQIQIQAKIAIEEADVIFFV 88 >gi|122702707|emb|CAL88543.1| GTPase [Helicobacter pylori] Length = 170 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-G 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|12322014|gb|AAG51052.1|AC069473_14 GTPase, putative; 34281-30152 [Arabidopsis thaliana] Length = 659 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 7/93 (7%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAGIRET 280 I I+G N GKSS+ NAL ++D IV+ + GTTRD + + +G ++ DTAGIR+ Sbjct: 367 IAIIGRPNVGKSSILNALVREDRTIVSPVSGTTRDAIDAEFTGPDGEKFRLIDTAGIRKK 426 Query: 281 DDIV------EKEGIKRTFLEVENADLILLLKE 307 + E + R F + +D++ L+ E Sbjct: 427 SSVASSGSTTEAMSVNRAFRAIRRSDVVALVIE 459 Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust. Identities = 20/38 (52%), Positives = 26/38 (68%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 ++ I+G N GKS+LFN L ++ AIV D PG TRD L Sbjct: 156 RVAIVGRPNVGKSALFNRLVGENRAIVVDEPGVTRDRL 193 >gi|89897898|ref|YP_515008.1| GTP-binding protein EngA [Chlamydophila felis Fe/C-56] gi|123483923|sp|Q256C5|DER_CHLFF RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|89331270|dbj|BAE80863.1| GTP-binding GTPase [Chlamydophila felis Fe/C-56] Length = 475 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/89 (38%), Positives = 53/89 (59%), Gaps = 1/89 (1%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RE 279 +I ILG N GKSSLFN + K+ +AIV GTTRD L ++ V++ DT G+ ++ Sbjct: 3 RIAILGRPNVGKSSLFNRMCKQSLAIVNSQEGTTRDRLYGEIRGWSVPVQVIDTGGVDKD 62 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEI 308 ++D +K K+ AD++LL+ +I Sbjct: 63 SEDHFQKHIYKQALAGAGEADILLLVIDI 91 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI ++G N GKSS+ N L ++ I+ +IPGTTRD + I DTAG+R+ Sbjct: 214 KIALIGRPNVGKSSIINGLLNEERCIIDNIPGTTRDNVDILYSHNDRSYLFIDTAGLRKM 273 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E RT + AD+ LL+ Sbjct: 274 KSVKNSIEWISSSRTEKAIARADICLLV 301 >gi|209885506|ref|YP_002289363.1| small GTP-binding protein domain [Oligotropha carboxidovorans OM5] gi|209873702|gb|ACI93498.1| small GTP-binding protein domain [Oligotropha carboxidovorans OM5] Length = 469 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 30/96 (31%), Positives = 57/96 (59%), Gaps = 3/96 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ +LG NAGKS+L N L ++ + + GTTRD + +D++ +G +++ DTAG+R Sbjct: 199 RVAVLGRPNAGKSTLINYLLGEERLLTSPEAGTTRDSIAVDVEWKGRKLRVFDTAGLRRR 258 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313 DD +EK + V A++++L+ + ++ E Sbjct: 259 SRIDDKLEKLSVSDALRAVRFAEVVVLVMDAQNRFE 294 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 32/58 (55%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 + I I+G N GKS+LFN L + +A+V D PG TRD L I DTAG+ Sbjct: 13 FTIAIIGRPNVGKSTLFNRLVGQKLALVDDQPGVTRDRREGQGRLGDLDFTIIDTAGL 70 >gi|228476619|ref|ZP_04061301.1| ribosome-associated GTPase EngA [Streptococcus salivarius SK126] gi|228251814|gb|EEK10879.1| ribosome-associated GTPase EngA [Streptococcus salivarius SK126] Length = 457 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/145 (29%), Positives = 74/145 (51%), Gaps = 31/145 (21%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID-LDLEGYLVKISDTAGIRETDD 282 ++G N GKSSL NA+ +D I + I GTTRD + + +D EG + DTAG+R++ Sbjct: 200 LIGRPNVGKSSLINAILGEDRVIASPIAGTTRDAIDTNFVDSEGQEYTMIDTAGMRKSGK 259 Query: 283 I---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY 339 + EK + R+ ++ +D++L++ IN+++ I EY Sbjct: 260 VYENTEKYSVMRSMRAIDRSDIVLMV--INAEEGI----------------------REY 295 Query: 340 DHLISSF---TGEGLEELINKIKSI 361 D I+ F G+G+ ++NK +I Sbjct: 296 DKRIAGFAHEAGKGIIIVVNKWDTI 320 Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 45/84 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN +A + ++IV D+ G TRD + + + DT GI + D Sbjct: 27 VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTSAEWLNRQFSLIDTGGIDDVD 86 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + + + AD+I+ + Sbjct: 87 APFMEQIKHQADIAMTEADVIVFV 110 >gi|190892852|ref|YP_001979394.1| GTP-binding protein [Rhizobium etli CIAT 652] gi|238692517|sp|B3PVJ6|DER_RHIE6 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|190698131|gb|ACE92216.1| GTP-binding protein [Rhizobium etli CIAT 652] Length = 473 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/87 (39%), Positives = 48/87 (55%), Gaps = 1/87 (1%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 + + I+G N GKS+LFN L K +A+V D PG TRD D L G I DTAG+ E Sbjct: 3 FTVAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGDARLMGLTFTIIDTAGLEE 62 Query: 280 TD-DIVEKEGIKRTFLEVENADLILLL 305 D + ++ +T ++ ADL L + Sbjct: 63 ADEESLQGRMRAQTEAAIDEADLSLFV 89 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 38/66 (57%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G NAGKS+L N +D + G TRD ++++ D G +K+ DTAG+R Sbjct: 204 RVAIVGRPNAGKSTLINRFLGEDRLLTGPEAGITRDSISVEWDWRGRTIKMFDTAGMRRK 263 Query: 281 DDIVEK 286 + EK Sbjct: 264 ARVTEK 269 >gi|307946716|ref|ZP_07662051.1| ribosome-associated GTPase EngA [Roseibium sp. TrichSKD4] gi|307770380|gb|EFO29606.1| ribosome-associated GTPase EngA [Roseibium sp. TrichSKD4] Length = 478 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 51/162 (31%), Positives = 76/162 (46%), Gaps = 24/162 (14%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G + I+G N GKS+LFN L K +A+V D PG TRD + L I DTAG+ Sbjct: 2 GATVAIIGRPNVGKSTLFNRLVGKRLALVDDTPGVTRDRRPGEARLGDLRFTIVDTAGLE 61 Query: 279 ETD-DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTK--------- 328 + D +E K+T +E A+ IL + I+++ ++ P + F I K Sbjct: 62 DADASSLEGRMRKQTEDAIEEANAILFV--IDARAGVT-PLDAHFAAIARKTTTPVILLA 118 Query: 329 ---------SDLYSTYTEEYDHLI--SSFTGEGLEELINKIK 359 S LY +Y+ I S+ GEGL +L + +K Sbjct: 119 NKAEGRAGESGLYESYSLGLGEPIAVSAEHGEGLADLYDALK 160 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 38/66 (57%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G NAGKS+L N + +D + G TRD +++D + VK+ DTAGIR Sbjct: 207 RVAIVGRPNAGKSTLINRMLGEDRMLTGPEAGITRDSISVDWEWRERHVKLFDTAGIRRK 266 Query: 281 DDIVEK 286 + EK Sbjct: 267 ARVQEK 272 >gi|122702457|emb|CAL88419.1| GTPase [Helicobacter pylori] Length = 170 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 39/102 (38%), Positives = 58/102 (56%), Gaps = 4/102 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-G 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI 320 ++ KE + +DLIL + K I S ++I + I Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDIKLFREI 110 >gi|58617258|ref|YP_196457.1| GTP-binding protein EngA [Ehrlichia ruminantium str. Gardel] gi|58416870|emb|CAI27983.1| Probable GTP-binding protein engA [Ehrlichia ruminantium str. Gardel] Length = 439 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI I+G NAGKS+ N L +D IV+ PGTTRD + I+ + +G + DTAG+R+ Sbjct: 175 KISIVGRPNAGKSTFVNRLVGEDRMIVSSEPGTTRDAVDIEYEYQGQKFILIDTAGMRKK 234 Query: 281 DDIVEKEGIKRTFLEVEN---ADLILLL 305 I E + + +E+ +D+++L+ Sbjct: 235 AKITENIELTSVYKSIESINRSDIVILM 262 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 37/104 (35%), Positives = 58/104 (55%), Gaps = 8/104 (7%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI--R 278 K+ I+G N GKS++FN L KK AIV+++P TRD DL G K+ DT G+ R Sbjct: 3 KVAIVGLPNVGKSTIFNRLVKKRSAIVSNVPNLTRDRREGSADLCGLKFKVIDTGGVDYR 62 Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF 322 ++ + +K L +E D+I + + +++I KNI+F Sbjct: 63 IKLSVLILDQVK---LAIEACDVIFFVVDARVERDI---KNIEF 100 >gi|283458421|ref|YP_003363045.1| putative GTPase [Rothia mucilaginosa DY-18] gi|283134460|dbj|BAI65225.1| predicted GTPase [Rothia mucilaginosa DY-18] Length = 528 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 4/88 (4%) Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250 + L++IL ++ SQ E + ++ ++G N GKSSL N LA + A+V D+ Sbjct: 227 DALDEIL----EVMPEHSQFAQPEALGGPRRVALVGRPNVGKSSLLNKLAGSERAVVNDL 282 Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIR 278 GTTRD + ++L GY + DTAGIR Sbjct: 283 AGTTRDPIDEIIELGGYPWRFVDTAGIR 310 Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 30/55 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 + I+G N GKS++ N + + A+V D PG TRD ++ + G + DT G Sbjct: 79 VAIVGRPNVGKSTIINRILGRREAVVEDKPGVTRDRVSYKAEWLGKSFTLVDTGG 133 >gi|307128641|ref|YP_003880671.1| GTP-binding protein EngA [Candidatus Sulcia muelleri CARI] gi|306483103|gb|ADM89973.1| GTP-binding protein EngA [Candidatus Sulcia muelleri CARI] Length = 436 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/93 (37%), Positives = 53/93 (56%), Gaps = 3/93 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 +I I+G N GKS+L N L K+ IVT+I GTTRD + + G + DTAGIR Sbjct: 177 RIAIVGRPNVGKSTLINTLLNKNQNIVTNISGTTRDSIDVFYKKFGIECILVDTAGIRKK 236 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINS 310 + + +E + R ++N+D+ LL+ +I S Sbjct: 237 KKIKENIEFYSVMRAIKSIQNSDVCLLIIDIKS 269 Score = 43.9 bits (102), Expect = 0.055, Method: Compositional matrix adjust. Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 2/87 (2%) Query: 221 KIV-ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IR 278 KIV I+G SN GKS+LFN L +IV G TRD + G + DT G Sbjct: 3 KIVSIVGRSNVGKSTLFNRLIGYRKSIVNYKSGVTRDRNYGFCNWNGIEFCLIDTGGYTN 62 Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL 305 ++++I EK+ ++ F +E +D++L L Sbjct: 63 KSENIFEKKICEQFFFALEESDILLFL 89 >gi|145332365|ref|NP_001078139.1| emb2738 (embryo defective 2738); GTP binding [Arabidopsis thaliana] gi|332641626|gb|AEE75147.1| GTP-binding protein [Arabidopsis thaliana] Length = 587 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 7/93 (7%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAGIRET 280 I I+G N GKSS+ NAL ++D IV+ + GTTRD + + +G ++ DTAGIR+ Sbjct: 371 IAIIGRPNVGKSSILNALVREDRTIVSPVSGTTRDAIDAEFTGPDGEKFRLIDTAGIRKK 430 Query: 281 DDIV------EKEGIKRTFLEVENADLILLLKE 307 + E + R F + +D++ L+ E Sbjct: 431 SSVASSGSTTEAMSVNRAFRAIRRSDVVALVIE 463 Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust. Identities = 20/38 (52%), Positives = 26/38 (68%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 ++ I+G N GKS+LFN L ++ AIV D PG TRD L Sbjct: 160 RVAIVGRPNVGKSALFNRLVGENRAIVVDEPGVTRDRL 197 >gi|57168525|ref|ZP_00367658.1| GTPase [Campylobacter coli RM2228] gi|305432942|ref|ZP_07402100.1| ribosome-associated GTPase EngA [Campylobacter coli JV20] gi|57020030|gb|EAL56707.1| GTPase [Campylobacter coli RM2228] gi|304444096|gb|EFM36751.1| ribosome-associated GTPase EngA [Campylobacter coli JV20] Length = 460 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 38/113 (33%), Positives = 64/113 (56%), Gaps = 5/113 (4%) Query: 202 DISSHISQGK---LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 D H +GK E+ +N ++ I+G N GKSSL NAL K++ ++V+ I GTT D + Sbjct: 175 DFLEHYEEGKEFQFKELDQNYIRVGIVGRVNVGKSSLLNALVKQERSVVSSIAGTTIDPV 234 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI--VEKEGIKRTFLEVENADLILLLKEIN 309 + + +++ DTAGIR+ I +E+ + RT + N+ + LL+ + N Sbjct: 235 NESIVYKDKVIEFVDTAGIRKRGKIQGLERFALNRTEKILSNSQIALLVLDAN 287 Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 55/85 (64%), Gaps = 3/85 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I+++G N GKSSLFN +A++ +AI ++I GTTRD ++ + + D+ G+ E++ Sbjct: 4 IILIGKPNVGKSSLFNRMARQRIAITSEISGTTRDTNKTEVFINSKKALLIDSGGLDESN 63 Query: 282 DIVEKEGIKRTFLEV-ENADLILLL 305 ++ + +K+ L++ + +D+IL L Sbjct: 64 ELF--KNVKKNTLKIAKQSDIILYL 86 >gi|311030574|ref|ZP_07708664.1| GTP-binding protein EngA [Bacillus sp. m3-13] Length = 436 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K ++G N GKSSL NAL ++ IV+DI GTTRD + +G I DTAG+R+ Sbjct: 177 KFSLIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDAIDTPYSYDGKDYVIIDTAGMRKK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + EK + R +E +D++L++ Sbjct: 237 GKVYETTEKYSVLRALRAIERSDVVLVV 264 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN + + ++IV D+PG TRD + + I DT GI +D Sbjct: 6 VAIVGRPNVGKSTIFNRIVGERISIVEDVPGVTRDRIYSSGEWLNQYFNIIDTGGIEISD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + ++ + ++ AD+I+ + Sbjct: 66 APFMTQIREQAEIAIDEADVIIFM 89 >gi|292806610|gb|ADE42435.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-G 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|260575150|ref|ZP_05843151.1| small GTP-binding protein [Rhodobacter sp. SW2] gi|259022772|gb|EEW26067.1| small GTP-binding protein [Rhodobacter sp. SW2] Length = 492 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/87 (40%), Positives = 49/87 (56%), Gaps = 1/87 (1%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 + + I+G N GKS+LFN L + +A+V D PG TRD+ D L + DTAG+ E Sbjct: 3 FTLAIVGRPNVGKSTLFNRLVGRKLALVDDQPGVTRDLREGDAKLFDLRFTVIDTAGLEE 62 Query: 280 -TDDIVEKEGIKRTFLEVENADLILLL 305 TDD ++ + T VE AD+ L L Sbjct: 63 VTDDSLQGRMRRLTERAVEMADVCLFL 89 Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 37/66 (56%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I ++G NAGKS+L N + D + G TRD +++ D ++I DTAG+R+ Sbjct: 204 QIAVIGRPNAGKSTLINKIVGFDRMLTGPEAGITRDAISVKADWFDTPIRIFDTAGMRKK 263 Query: 281 DDIVEK 286 I +K Sbjct: 264 ARISDK 269 >gi|292806624|gb|ADE42442.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-G 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|9294105|dbj|BAB01956.1| GTP-binding protein-like [Arabidopsis thaliana] Length = 537 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 7/93 (7%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAGIRET 280 I I+G N GKSS+ NAL ++D IV+ + GTTRD + + +G ++ DTAGIR+ Sbjct: 245 IAIIGRPNVGKSSILNALVREDRTIVSPVSGTTRDAIDAEFTGPDGEKFRLIDTAGIRKK 304 Query: 281 DDIV------EKEGIKRTFLEVENADLILLLKE 307 + E + R F + +D++ L+ E Sbjct: 305 SSVASSGSTTEAMSVNRAFRAIRRSDVVALVIE 337 Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 11/81 (13%) Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFN 237 F E+E ++ ++ + I H+ Q ++ I+G N GKS+LFN Sbjct: 2 FPEDETIEGKETRRKGKRLAKNTQQIPEHLLQ-----------RVAIVGRPNVGKSALFN 50 Query: 238 ALAKKDVAIVTDIPGTTRDVL 258 L ++ AIV D PG TRD L Sbjct: 51 RLVGENRAIVVDEPGVTRDRL 71 >gi|297161654|gb|ADI11366.1| GTP-binding protein EngA [Streptomyces bingchenggensis BCW-1] Length = 488 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 52/191 (27%), Positives = 89/191 (46%), Gaps = 37/191 (19%) Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 G I +I ++G N GKSSL N +A ++ +V ++ GTTRD + ++L G K Sbjct: 218 FGAAIGGPRRIALIGRPNVGKSSLLNKVAGEERVVVNEMAGTTRDPVDELIELGGVTWKF 277 Query: 272 SDTAGIRETDDIVEKEGIK-----RTFLEVENADLILLLKEINSKKEISFPKNIDFIFIG 326 DTAGIR + +EG RT VE A+L ++L I+S + IS ++ I + Sbjct: 278 VDTAGIRRRVHL--QEGADYYASLRTAAAVEKAELAVIL--IDSSESISV-QDQRIISMA 332 Query: 327 TKS--------DLYSTYTEEYDHL-------------------ISSFTGEGLEELINKIK 359 ++ + + T EE + +S+ TG +E+L+ I+ Sbjct: 333 VEAGRAIVVAYNKWDTLDEERRYYLEREIETELGQIQWAPRVNVSARTGRHMEKLVPAIE 392 Query: 360 SILSNKFKKLP 370 + L+ ++P Sbjct: 393 TALTGWETRVP 403 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/84 (28%), Positives = 43/84 (51%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+L N + + A+V D PG TRD +T + + G K+ DT G + Sbjct: 53 LAVVGRPNVGKSTLVNRIIGRREAVVEDRPGVTRDRVTYEAEWSGRRFKVVDTGGWEQDV 112 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + +E AD ++ + Sbjct: 113 LGIDASVAAQAEFAIEAADAVVFV 136 >gi|307720282|ref|YP_003891422.1| ribosome-associated GTPase EngA [Sulfurimonas autotrophica DSM 16294] gi|306978375|gb|ADN08410.1| ribosome-associated GTPase EngA [Sulfurimonas autotrophica DSM 16294] Length = 492 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 66/121 (54%), Gaps = 7/121 (5%) Query: 187 FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAI 246 + +E+ +D +F +ND + + I KI I+G +N GKSSL NAL ++ ++ Sbjct: 205 WDEEEIEDDSIFAQNDRIKEFDENDINHI-----KIAIIGRTNVGKSSLLNALLGEERSV 259 Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV--EKEGIKRTFLEVENADLILL 304 V+ + GTT D + + + + DTAG+R IV EK + RT +ENA++ L+ Sbjct: 260 VSSVAGTTIDPIDETIVYKDKQLTFVDTAGLRRRGKIVGIEKFALMRTKEMLENANMALV 319 Query: 305 L 305 + Sbjct: 320 V 320 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/91 (42%), Positives = 52/91 (57%), Gaps = 13/91 (14%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV-----LTIDLDLEGYLVKISDTA 275 KI I+G N GKSSLFN L KK AI +D+ GTTRDV L ID + E + DT Sbjct: 3 KIAIIGRPNVGKSSLFNRLVKKRDAITSDLAGTTRDVKRKTALIIDKEAE-----LLDTG 57 Query: 276 GIRETDDIVEKEGIKRTFLEVE-NADLILLL 305 G+ + ++ +K IK L+ AD+IL + Sbjct: 58 GLDKGCELFDK--IKEMSLKAAYKADIILFM 86 >gi|226328001|ref|ZP_03803519.1| hypothetical protein PROPEN_01892 [Proteus penneri ATCC 35198] gi|225203705|gb|EEG86059.1| hypothetical protein PROPEN_01892 [Proteus penneri ATCC 35198] Length = 119 Score = 57.8 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 32/84 (38%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L + A+V D PG TRD +LEG I DT GI + Sbjct: 10 IALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAELEGEEFIIIDTGGIDGAE 69 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + VE ++ ++ AD++L L Sbjct: 70 EGVETHMASQSLQAIQEADIVLFL 93 >gi|115377683|ref|ZP_01464876.1| GTP-binding protein EngA [Stigmatella aurantiaca DW4/3-1] gi|310821559|ref|YP_003953917.1| GTP-binding protein EngA [Stigmatella aurantiaca DW4/3-1] gi|115365289|gb|EAU64331.1| GTP-binding protein EngA [Stigmatella aurantiaca DW4/3-1] gi|309394631|gb|ADO72090.1| GTP-binding protein EngA [Stigmatella aurantiaca DW4/3-1] Length = 462 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 49/193 (25%), Positives = 89/193 (46%), Gaps = 33/193 (17%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKS++ NA+ K+ + +++PGTTRD + L +G+ + ++DTAGIR Sbjct: 184 RVAIIGRPNVGKSTMVNAILKEKRVVASEVPGTTRDPIDSALTYKGHKLILTDTAGIRRK 243 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKS 329 I VE+ + ++ +D+ +LL + ++ K + + K Sbjct: 244 RSIAHRVEQFSVVSALKVMDRSDVAVLLMDATEPAVDQDAKLAGLAEDKGRALVIVVNKW 303 Query: 330 DLYST-------YTEEYDH-----------LISSFTGEGLEELINKIKSILSNKFK-KLP 370 DL T Y E H S+ TG +E++++ I L+ +F+ + P Sbjct: 304 DLIGTDQRRQEAYREALKHSLKFVGYAPIIFTSALTGSKVEKVVD-IAVELAEQFRYRAP 362 Query: 371 FSIPSHKRHLYHL 383 P R L H+ Sbjct: 363 --TPQLNRLLEHM 373 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 1/87 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 + I+G N GKS+LFN LA + +A+V D PG TRD D + DT G + Sbjct: 5 VAIVGRPNVGKSTLFNRLAGRRLALVEDEPGVTRDRHYADAQWGDRAFTLIDTGGFVPGE 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE 307 D + K+ ++ L VE D+IL + + Sbjct: 65 KDSLLKQVREQAQLAVEECDVILFVTD 91 >gi|85707619|ref|ZP_01038685.1| predicted GTPase [Erythrobacter sp. NAP1] gi|85689153|gb|EAQ29156.1| predicted GTPase [Erythrobacter sp. NAP1] Length = 475 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/86 (38%), Positives = 49/86 (56%), Gaps = 1/86 (1%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +++I+G N GKS+LFN L K +A+V D PG TRD D ++ G I DTAG + Sbjct: 4 QVIIIGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDRRMGDAEIAGLKFTIVDTAGWEDE 63 Query: 281 DDIVEKEGI-KRTFLEVENADLILLL 305 D++ + K+T +E AD L + Sbjct: 64 DELTLPGRMRKQTEASLEGADAALFV 89 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 6/72 (8%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL------EGYLVKISDT 274 K+ I+G NAGKS+L N L +D + G TRD + ID + E +++ DT Sbjct: 190 KLAIVGRPNAGKSTLINRLLGEDRLLTGPEAGITRDSIAIDWEWTDPKSGETREIRLIDT 249 Query: 275 AGIRETDDIVEK 286 AG+R+ ++VEK Sbjct: 250 AGMRKKRNVVEK 261 >gi|288556077|ref|YP_003428012.1| GTP-binding protein Der [Bacillus pseudofirmus OF4] gi|288547237|gb|ADC51120.1| GTP-binding protein EngA [Bacillus pseudofirmus OF4] Length = 437 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/97 (34%), Positives = 59/97 (60%), Gaps = 5/97 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I ++G N GKSSL NA+ ++ IV++IPGTTRD + +G + DTAG+R+ Sbjct: 177 RISLIGRPNVGKSSLVNAMLGEERVIVSNIPGTTRDAIDTSFTRDGQDYVLIDTAGMRKR 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEI 314 + EK + R+ +E ++++L++ IN+++ I Sbjct: 237 GKVYESTEKYSVLRSLKAIERSNVVLVV--INAEEGI 271 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 35/97 (36%), Positives = 56/97 (57%), Gaps = 8/97 (8%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID---LDLEGYLVKISDTAGIR 278 + I+G N GKS++FN + + VAIV D+PG TRD L LD E L+ DT GI Sbjct: 6 VAIVGRPNVGKSTIFNRIVGERVAIVEDMPGVTRDRLYSHGEWLDREFNLI---DTGGIE 62 Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D+ + + ++ L +E AD+I+ + +N ++ I+ Sbjct: 63 LADEPLLNQMREQAELAIEEADVIVFI--VNGREGIT 97 >gi|193212091|ref|YP_001998044.1| GTP-binding protein EngA [Chlorobaculum parvum NCIB 8327] gi|238692612|sp|B3QLF4|DER_CHLP8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|193085568|gb|ACF10844.1| small GTP-binding protein [Chlorobaculum parvum NCIB 8327] Length = 438 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 36/88 (40%), Positives = 48/88 (54%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ +LG N GKSSL NAL D IV+D+PGTTRD + L G + DTAG+R+ Sbjct: 180 KLAVLGRPNVGKSSLVNALLGTDRQIVSDVPGTTRDAIDSVLKRNGKEYILIDTAGLRKR 239 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 I +E RT +E + L+L Sbjct: 240 TKIDPGIEYYSSLRTERAIERCQVALVL 267 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 75/158 (47%), Gaps = 23/158 (14%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN + ++ AIV PG TRD + +G + DT G + Sbjct: 5 IALVGRPNVGKSTLFNRILRQKSAIVDPTPGVTRDRHINPGEWQGKQFLLMDTGGYAPEN 64 Query: 282 DIVEKEGIKRTFLEVENADLIL------------------LLKEINSKKEISFPKN-ID- 321 D + + +T + +AD I+ +LK+ S K+I F N +D Sbjct: 65 DSLSVAMLDQTMRAIADADAIIFMVDARSGLTYLDLDIAKILKQTFSDKKIFFAINKVDN 124 Query: 322 -FIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKI 358 + + + + S +TE Y LIS+ G G+ ++++ I Sbjct: 125 PQLALEAAAMVRSGFTEPY--LISARDGGGVADMLDDI 160 >gi|122702677|emb|CAL88528.1| GTPase [Helicobacter pylori] Length = 170 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-G 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|291544296|emb|CBL17405.1| iron-only hydrogenase maturation protein HydF [Ruminococcus sp. 18P13] Length = 390 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 48/149 (32%), Positives = 81/149 (54%), Gaps = 25/149 (16%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTAGIRE 279 I G NAGKSSL NA+ + +AIV+D PGTT D ++ ++L G ++ I DTAG+ + Sbjct: 14 IAFFGKRNAGKSSLMNAVTNQPMAIVSDTPGTTTDPVSKAMELLPLGPVLMI-DTAGLDD 72 Query: 280 TDDIVEK------EGIKRTFLEV------ENADLI--LLLKEINSKKEISFPKNIDFIFI 325 T ++ + + +++T L + E D+I LL+++NS ++I ++ + Sbjct: 73 TGELGSQRVHKSMQVMRKTDLAILVTNGAEPLDVIELALLEQLNS-------RSIPYVLV 125 Query: 326 GTKSDLYSTYTEEYDHLISSFTGEGLEEL 354 K DL E +S+ TGEG++ L Sbjct: 126 RNKCDLTDRRDGE-GVFVSARTGEGIDAL 153 >gi|289579295|ref|YP_003477922.1| small GTP-binding protein [Thermoanaerobacter italicus Ab9] gi|289529008|gb|ADD03360.1| small GTP-binding protein [Thermoanaerobacter italicus Ab9] Length = 408 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 49/127 (38%), Positives = 71/127 (55%), Gaps = 13/127 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAGIRET 280 I I G NAGKSSL NAL ++VA+V+D+ GTT D ++ ++ L V I DTAG+ +T Sbjct: 12 IAIFGRRNAGKSSLINALTNQEVALVSDVAGTTTDPVSKAMEILPIGPVVIIDTAGLDDT 71 Query: 281 DDIVEKEGIKRTFLEVENADLILLLK---------EINSKKEISFPKNIDFIFIGTKSDL 331 ++ E +K+T+ + DL +L+ E N K I KNI + + K DL Sbjct: 72 GELGELR-VKKTYEVLNRTDLAILVIDGTIGLSEFEENVLKVIR-DKNIPVVGVINKKDL 129 Query: 332 YSTYTEE 338 S Y+EE Sbjct: 130 -SQYSEE 135 >gi|148377384|ref|YP_001256260.1| GTP-binding protein Era [Mycoplasma agalactiae PG2] gi|226741223|sp|A5IXQ6|ERA_MYCAP RecName: Full=GTPase Era gi|148291430|emb|CAL58815.1| GTP binding protein era [Mycoplasma agalactiae PG2] Length = 290 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 50/88 (56%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSL N + K D+AIV+++P TTRD + +GY DT GI + Sbjct: 6 ISILGRPNVGKSSLLNKIIKYDLAIVSNVPQTTRDQIMGVYTEDGYQFVFVDTPGIHKPL 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN 309 +++ + K F +++ D +L L +N Sbjct: 66 NLLGESLNKEAFSSLKDIDCVLFLSPVN 93 >gi|239997025|ref|ZP_04717549.1| GTP-binding protein EngA [Alteromonas macleodii ATCC 27126] Length = 481 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 61/98 (62%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ + + DTAG+R+ Sbjct: 195 KLAIVGKPNVGKSTLTNRILGEERVVVFDMPGTTRDSVYIPMERDEREYILIDTAGVRKR 254 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 I VEK I +T +E A+++LL+ I++++ I+ Sbjct: 255 KKISEAVEKFSIVKTLQAIEEANVVLLV--IDAREGIT 290 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 45/84 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L A+V D PG TRD E + DT GI + Sbjct: 5 VALVGRPNVGKSTLFNRLTNTRDALVADYPGLTRDRKYGQAKFEKRQFIVVDTGGITGDE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + ++ E +++ L +E AD++L L Sbjct: 65 EGIDAEMAQQSLLAIEEADVVLFL 88 >gi|257066409|ref|YP_003152665.1| small GTP-binding protein [Anaerococcus prevotii DSM 20548] gi|256798289|gb|ACV28944.1| small GTP-binding protein [Anaerococcus prevotii DSM 20548] Length = 439 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 37/97 (38%), Positives = 54/97 (55%), Gaps = 3/97 (3%) Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 I + +I I+G NAGKSSL N L ++ IVTDI GTTRD + + + DTA Sbjct: 172 IEDETRIAIIGKPNAGKSSLVNLLLNEERMIVTDIAGTTRDAVDSYWQYNDHNYVLIDTA 231 Query: 276 GIRETDDI---VEKEGIKRTFLEVENADLILLLKEIN 309 G+R + VE +RTF V+++++ L L + N Sbjct: 232 GLRRKSKVKENVEYYANQRTFDAVDSSEICLFLIDAN 268 Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 80/166 (48%), Gaps = 32/166 (19%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G +N GKS+LFN L K +I DI G TRD + ++ + + DT G+ Sbjct: 6 VTLVGRTNVGKSTLFNRLVGKRKSITEDISGVTRDRIVDKVEWQNKEFLLVDTGGL---- 61 Query: 282 DIVEKEGIKRTF-LEVENA----DLILLLKEINSKKEISFPKNIDF-----------IFI 325 DI KE + +VE A +LIL + ++ K+ ++ P ++D I + Sbjct: 62 DISNKEVMNTEIKAQVEKALIETNLILFV--VDGKEGVN-PYDVDIANEIRKYNKPVIIV 118 Query: 326 GTK-------SDLYSTYTEEYDH--LISSFTGEGLEELINKIKSIL 362 K D+Y Y +D +IS+ +GL +L++KI S + Sbjct: 119 ANKLDSFKIPDDIYDFYQFGFDDMSMISAEQSKGLGDLLDKIVSFI 164 >gi|218960708|ref|YP_001740483.1| GTP-binding protein [Candidatus Cloacamonas acidaminovorans] gi|167729365|emb|CAO80276.1| GTP-binding protein [Candidatus Cloacamonas acidaminovorans] Length = 449 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 77/161 (47%), Gaps = 22/161 (13%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR- 278 Y + I+G N GKS+LFN L +K AIV G TRD D++ G + K+ DT GI Sbjct: 4 YIVSIVGRPNVGKSTLFNRLCRKRSAIVDFEAGITRDRKYEDVEWNGKIFKLVDTGGIVF 63 Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEIS---FPKNIDFIFIGTKSD 330 + + ++K + + L ++ +DLI+ + + + KEI+ +P + + K+D Sbjct: 64 NSIETIDKMVLHQVMLAIDESDLIIFMVDAQTGTTDIDKEIAKILYPHKDKVMLVANKAD 123 Query: 331 LYSTYTEEYDHLISSF-------------TGEGLEELINKI 358 E YD L F TG+ L+ +I +I Sbjct: 124 NEKYEWEVYDFLQLGFGDVIPISASQGRNTGDFLDAVIERI 164 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I ++G N GKSS+ N L IVT+IPGTTRD + + DTAG+R Sbjct: 181 RIAVVGKPNVGKSSIVNLLLGNPKLIVTEIPGTTRDAIDSPFRYHNKDYILIDTAGLRRK 240 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + VE RT ++ D+++L+ Sbjct: 241 TRVNYGVEYFSTLRTIEAIDRCDIVVLV 268 >gi|122702177|emb|CAL88279.1| GTPase [Helicobacter pylori] Length = 170 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-G 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|76789443|ref|YP_328529.1| GTP-binding protein EngA [Chlamydia trachomatis A/HAR-13] gi|237803133|ref|YP_002888327.1| GTP-binding protein EngA [Chlamydia trachomatis B/Jali20/OT] gi|237805054|ref|YP_002889208.1| GTP-binding protein EngA [Chlamydia trachomatis B/TZ1A828/OT] gi|123606653|sp|Q3KKZ1|DER_CHLTA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|76167973|gb|AAX50981.1| GTP-binding protein [Chlamydia trachomatis A/HAR-13] gi|231273354|emb|CAX10269.1| GTP-binding protein [Chlamydia trachomatis B/TZ1A828/OT] gi|231274367|emb|CAX11162.1| GTP-binding protein [Chlamydia trachomatis B/Jali20/OT] Length = 490 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 59/113 (52%), Gaps = 5/113 (4%) Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266 ++Q + K+ ++GH N GKSS+ NAL K++ I + PGTTRD + + Sbjct: 214 VAQTATPAPVDRPLKVALIGHPNVGKSSIINALLKEERCITDNSPGTTRDNIDVAYTHNN 273 Query: 267 YLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISF 316 DTAG+R+T I VE RT + D+ LL+ I++ +++S+ Sbjct: 274 KEYVFIDTAGLRKTKSIKNSVEWMSSSRTEKAISRTDICLLV--IDATQQLSY 324 Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 1/68 (1%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RE 279 +I ILG N GKSSLFN L K+ +AIV GTTRD L ++ ++ + DT G+ +E Sbjct: 2 RIAILGRPNVGKSSLFNRLCKRSLAIVNSQEGTTRDRLYGEIRAWDSIIHVIDTGGVDQE 61 Query: 280 TDDIVEKE 287 + D +K+ Sbjct: 62 STDRFQKQ 69 >gi|160331570|ref|XP_001712492.1| engA [Hemiselmis andersenii] gi|159765940|gb|ABW98167.1| engA [Hemiselmis andersenii] Length = 519 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 38/92 (41%), Positives = 51/92 (55%), Gaps = 9/92 (9%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG----YLVKISDTAG 276 K+ I+G N GKSS+ N L K AIV+DIPGTTRD + D + G + + DTAG Sbjct: 256 KVAIIGKPNVGKSSILNFLTNKKRAIVSDIPGTTRD--SCDSFISGGSNSNIYNLIDTAG 313 Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLL 305 IR+ I E I RTF ++ D +L + Sbjct: 314 IRKKKMIEYGPEFFMINRTFKAIQKCDCVLFV 345 >gi|312898938|ref|ZP_07758326.1| ribosome-associated GTPase EngA [Megasphaera micronuciformis F0359] gi|310620100|gb|EFQ03672.1| ribosome-associated GTPase EngA [Megasphaera micronuciformis F0359] Length = 442 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 37/110 (33%), Positives = 60/110 (54%), Gaps = 3/110 (2%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L +++ SHI + + E + I ++G N GKSSL NAL K+ IV+D+ GTTRD + Sbjct: 157 LLDEVLSHIKEVPVQEDDESVVHIALVGRPNVGKSSLTNALLGKERVIVSDMAGTTRDSI 216 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305 +G + DTAG+R I VE+ + R ++ +D+ +L+ Sbjct: 217 DTHWKHDGTEFVLIDTAGMRRKGKIDLPVERYSVVRALRAIDRSDVAVLV 266 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 31/86 (36%), Positives = 50/86 (58%), Gaps = 2/86 (2%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--E 279 + ++G N GKS+LFNA+ KK ++IV D+PG TRD + D + G + DT GI + Sbjct: 6 VAVVGRPNVGKSTLFNAIVKKRISIVEDLPGVTRDRIYFDAEWLGREFTLIDTGGIEFVD 65 Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305 +D+ + + L + AD+IL + Sbjct: 66 SDNNIFTSMRYQAELAIHEADVILYV 91 >gi|295111440|emb|CBL28190.1| iron-only hydrogenase maturation protein HydF [Synergistetes bacterium SGP1] Length = 407 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 55/163 (33%), Positives = 76/163 (46%), Gaps = 34/163 (20%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-------------VLTID---LDLE 265 + G NAGKSSL NA+ +D++IV+D+ GTT D VL ID LD E Sbjct: 14 VAFFGVRNAGKSSLVNAVTGQDLSIVSDVGGTTTDPVRKAMELLPLGPVLIIDTPGLDDE 73 Query: 266 GYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF 322 G L + +R ETD V +R E + L+ LLKE + I F Sbjct: 74 GALGALRVERTLRILAETDAAVLAADARRPLTE-HDHRLLALLKE----------RAIPF 122 Query: 323 IFIGTKSDLYSTYTEE---YDHL-ISSFTGEGLEELINKIKSI 361 + TK+DL D L +S+ TGE +EEL +I ++ Sbjct: 123 LIARTKADLLRPEERPAPGRDELCVSAVTGENVEELKERIAAL 165 >gi|292806422|gb|ADE42341.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-G 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|119357805|ref|YP_912449.1| GTP-binding protein EngA [Chlorobium phaeobacteroides DSM 266] gi|166224325|sp|A1BHZ8|DER_CHLPD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|119355154|gb|ABL66025.1| small GTP-binding protein [Chlorobium phaeobacteroides DSM 266] Length = 437 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 79/169 (46%), Gaps = 23/169 (13%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS LFN + ++ AIV PG TRD + +G + DT G Sbjct: 5 IAIVGRPNVGKSMLFNRILREKSAIVDSTPGVTRDRHISPGEWQGKQFLLMDTGGYCPEG 64 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS------------------KKEISFPKN---I 320 D++ +++T + + +AD+IL L ++ S K+I F N Sbjct: 65 DVISMAMLEQTLMAIRDADIILFLADVRSGLTYDDLEISKLLQRTFQHKQIFFAVNKVET 124 Query: 321 DFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369 + I +S + + +T+ Y +S+ G G+ EL++ + L + K+L Sbjct: 125 PQLSIDAESFVSTGFTKPY--FVSARDGSGVAELLDDMLDSLPVQEKQL 171 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 3/87 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKSS NAL + IV+DIPGTTRD + + + DTAG+R+ Sbjct: 180 LAVVGRPNVGKSSFVNALLGANRLIVSDIPGTTRDAIDSRFTRKKQDFVLIDTAGLRKRT 239 Query: 282 DI---VEKEGIKRTFLEVENADLILLL 305 I +E RT +E D+ L++ Sbjct: 240 KIDAGIEYYSSLRTDKAIERCDVALVM 266 >gi|300087240|ref|YP_003757762.1| ribosome-associated GTPase EngA [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299526973|gb|ADJ25441.1| ribosome-associated GTPase EngA [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 439 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 45/179 (25%), Positives = 81/179 (45%), Gaps = 31/179 (17%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA---GI 277 +I I G +N GKSSL N L +D AIV+ +PGTTRD + +D V + DTA Sbjct: 180 RIAIAGRANVGKSSLLNTLVGEDRAIVSPVPGTTRDAVDTPIDFGTGGVVLIDTAGIRRR 239 Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI--------SFPKNIDFIFIGTKS 329 + VE+ + R+ ++ AD++L++ + + K I + KS Sbjct: 240 GRIERGVEEYSVIRSLHAIDRADVVLIVLDAGEPATAQDTHIAGYAREKCRGLILVVNKS 299 Query: 330 DL------------------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370 DL + Y + + +S+ +GEG++++I + + +++P Sbjct: 300 DLLKEVDMAEFDKNMASRFKFIPYARQIN--VSALSGEGVDKIIPAAFEVQQERTRRIP 356 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 39/160 (24%), Positives = 73/160 (45%), Gaps = 19/160 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--E 279 + I+G N GKS+L N L + AI D+PGTTRD + + + G + DT G+ + Sbjct: 7 VAIVGRQNVGKSTLLNRLTGRRQAITQDLPGTTRDRMYVPVSHSGREFLLVDTGGMAGGD 66 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEIN-----SKKEIS-----FPKNIDFIFIGTKS 329 T D+ ++ + + A +I+ L E +EI+ K + + + Sbjct: 67 TGDVFTPAVNEQVRIAMREASVIVFLTEARFGLTPQDEEIAEEVRRSSKPVILVVNKVDN 126 Query: 330 DLYSTYTEEYDHL-------ISSFTGEGLEELINKIKSIL 362 D + E+ L +S++ G G + L++++ +L Sbjct: 127 DRQGHHAIEFHALGMGEPVPVSAYHGRGTDALLDRVVELL 166 >gi|15605436|ref|NP_220222.1| GTP-binding protein EngA [Chlamydia trachomatis D/UW-3/CX] gi|255311532|ref|ZP_05354102.1| GTP-binding protein EngA [Chlamydia trachomatis 6276] gi|255317833|ref|ZP_05359079.1| GTP-binding protein EngA [Chlamydia trachomatis 6276s] gi|255349095|ref|ZP_05381102.1| GTP-binding protein EngA [Chlamydia trachomatis 70] gi|255503632|ref|ZP_05382022.1| GTP-binding protein EngA [Chlamydia trachomatis 70s] gi|255507311|ref|ZP_05382950.1| GTP-binding protein EngA [Chlamydia trachomatis D(s)2923] gi|8134429|sp|O84709|DER_CHLTR RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|3329158|gb|AAC68298.1| GTPase/GTP-binding protein [Chlamydia trachomatis D/UW-3/CX] gi|289525747|emb|CBJ15228.1| GTP-binding protein [Chlamydia trachomatis Sweden2] gi|296435319|gb|ADH17497.1| GTP-binding protein EngA [Chlamydia trachomatis E/150] gi|296436247|gb|ADH18421.1| GTP-binding protein EngA [Chlamydia trachomatis G/9768] gi|296437176|gb|ADH19346.1| GTP-binding protein EngA [Chlamydia trachomatis G/11222] gi|296438107|gb|ADH20268.1| GTP-binding protein EngA [Chlamydia trachomatis G/11074] gi|296439036|gb|ADH21189.1| GTP-binding protein EngA [Chlamydia trachomatis E/11023] gi|297140608|gb|ADH97366.1| GTP-binding protein EngA [Chlamydia trachomatis G/9301] gi|297748834|gb|ADI51380.1| GTP-binding protein [Chlamydia trachomatis D-EC] gi|297749714|gb|ADI52392.1| GTP-binding protein [Chlamydia trachomatis D-LC] Length = 490 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 59/113 (52%), Gaps = 5/113 (4%) Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266 ++Q + K+ ++GH N GKSS+ NAL K++ I + PGTTRD + + Sbjct: 214 VAQTATPAPVDRPLKVALIGHPNVGKSSIINALLKEERCITDNSPGTTRDNIDVAYTHNN 273 Query: 267 YLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISF 316 DTAG+R+T I VE RT + D+ LL+ I++ +++S+ Sbjct: 274 KEYVFIDTAGLRKTKSIKNSVEWMSSSRTEKAISRTDICLLV--IDATQQLSY 324 Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 1/68 (1%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RE 279 +I ILG N GKSSLFN L K+ +AIV GTTRD L ++ ++ + DT G+ +E Sbjct: 2 RIAILGRPNVGKSSLFNRLCKRSLAIVNSQEGTTRDRLYGEIRAWDSIIHVIDTGGVDQE 61 Query: 280 TDDIVEKE 287 + D +K+ Sbjct: 62 STDRFQKQ 69 >gi|329121290|ref|ZP_08249917.1| ribosome-associated GTPase EngA [Dialister micraerophilus DSM 19965] gi|327470224|gb|EGF15687.1| ribosome-associated GTPase EngA [Dialister micraerophilus DSM 19965] Length = 443 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 39/93 (41%), Positives = 57/93 (61%), Gaps = 10/93 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID---LDLEGYLVKISDTAGI- 277 + I+G N GKS++ N LA+K V+IV D+PG TRD + D LD E L+ DT GI Sbjct: 6 VAIVGRPNVGKSTIINGLAQKRVSIVEDLPGVTRDRIYCDAQWLDREFTLI---DTGGIE 62 Query: 278 -RETDDIVEKEGIK-RTFLEVENADLILLLKEI 308 RE D + +GI+ + L +E AD+IL + ++ Sbjct: 63 FREEADQIS-DGIRMQAQLAIEEADVILFVTDV 94 Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 49/88 (55%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 + I+G N GKS+L N+L + ++V D GTTRD + +G + DTAG+R Sbjct: 178 RTAIVGRPNVGKSTLVNSLLGYERSLVADEMGTTRDAIDSLWTHKGKKFVLVDTAGMRKK 237 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305 + D+ +EK + R+ +++ D+ + + Sbjct: 238 NKIDEPLEKYSVIRSIRAIDDCDVAVFV 265 >gi|218245012|ref|YP_002370383.1| GTP-binding protein EngA [Cyanothece sp. PCC 8801] gi|257058036|ref|YP_003135924.1| GTP-binding protein EngA [Cyanothece sp. PCC 8802] gi|226741133|sp|B7K1S0|DER_CYAP8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|218165490|gb|ACK64227.1| small GTP-binding protein [Cyanothece sp. PCC 8801] gi|256588202|gb|ACU99088.1| small GTP-binding protein [Cyanothece sp. PCC 8802] Length = 452 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKSSL NAL ++ AIV+ I GTTRD + + ++ DTAGIR Sbjct: 178 KVAIIGRPNVGKSSLLNALLGENRAIVSPISGTTRDAIDTVIQHNEQTYRLIDTAGIRRK 237 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 ++ E I R F + D++L + Sbjct: 238 KNVEYGAEFFSINRAFKAIRRCDVVLFV 265 Score = 40.0 bits (92), Expect = 0.74, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 31/61 (50%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+L N LA AIV D PG TRD + +I DT G+ D Sbjct: 6 VAIIGRPNVGKSTLANRLAGDQHAIVHDEPGITRDRTYRPGFWQDRDFQIVDTGGLVFDD 65 Query: 282 D 282 D Sbjct: 66 D 66 >gi|166154045|ref|YP_001654163.1| GTP-binding protein EngA [Chlamydia trachomatis 434/Bu] gi|166154920|ref|YP_001653175.1| GTP-binding protein EngA [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335246|ref|ZP_07223490.1| GTP-binding protein EngA [Chlamydia trachomatis L2tet1] gi|238687413|sp|B0BAF8|DER_CHLTB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|238687426|sp|B0B8S9|DER_CHLT2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|165930033|emb|CAP03516.1| GTP-binding protein [Chlamydia trachomatis 434/Bu] gi|165930908|emb|CAP06470.1| GTP-binding protein [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 490 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 59/113 (52%), Gaps = 5/113 (4%) Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266 ++Q + K+ ++GH N GKSS+ NAL K++ I + PGTTRD + + Sbjct: 214 VAQTATPAPVDRPLKVALIGHPNVGKSSIINALLKEERCITDNSPGTTRDNIDVAYTHNN 273 Query: 267 YLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISF 316 DTAG+R+T I VE RT + D+ LL+ I++ +++S+ Sbjct: 274 KEYVFIDTAGLRKTKSIKNSVEWMSSSRTEKAISRTDICLLV--IDATQQLSY 324 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 1/68 (1%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RE 279 +I ILG N GKSSLFN L ++ +AIV GTTRD L ++ ++ + DT G+ +E Sbjct: 2 RIAILGRPNVGKSSLFNRLCRRSLAIVNSQEGTTRDRLYGEIRAWDSIIHVIDTGGVDQE 61 Query: 280 TDDIVEKE 287 + D +K+ Sbjct: 62 STDRFQKQ 69 >gi|21674598|ref|NP_662663.1| GTP-binding protein EngA [Chlorobium tepidum TLS] gi|26006711|sp|Q8KBK3|DER_CHLTE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|21647797|gb|AAM73005.1| GTP-binding protein [Chlorobium tepidum TLS] Length = 437 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 36/88 (40%), Positives = 49/88 (55%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ +LG N GKSSL NAL + IV+D+PGTTRD + L G + DTAG+R+ Sbjct: 179 KLAVLGRPNVGKSSLVNALLGTERHIVSDVPGTTRDAIDSVLKRNGEEYVLIDTAGLRKR 238 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 I +E RT +E D+ L+L Sbjct: 239 TKIDAGIEFYSSLRTARAIERCDVALVL 266 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/160 (25%), Positives = 76/160 (47%), Gaps = 27/160 (16%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN + ++ AIV PG TRD + +G + DT G + Sbjct: 5 IALVGRPNVGKSTLFNRILRQKSAIVDPTPGVTRDRHISPGEWQGKQFLLMDTGGYAPEN 64 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP------------KNIDFIFIGTKS 329 D + K +++T +E+AD ++ + ++++ +++ K+ F+ K Sbjct: 65 DTLSKAMLEQTMRAIEDADAVIFI--VDARSGLTYLDLDIAKILQKTFKDKKIFFVANKV 122 Query: 330 D-----------LYSTYTEEYDHLISSFTGEGLEELINKI 358 D + S +TE Y LIS+ G G+ +++ + Sbjct: 123 DNPQVALEAQSLVKSGFTEPY--LISARDGAGVADMLEDV 160 >gi|313892548|ref|ZP_07826135.1| ribosome biogenesis GTPase Der [Dialister microaerophilus UPII 345-E] gi|313118945|gb|EFR42150.1| ribosome biogenesis GTPase Der [Dialister microaerophilus UPII 345-E] Length = 443 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 39/93 (41%), Positives = 57/93 (61%), Gaps = 10/93 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID---LDLEGYLVKISDTAGI- 277 + I+G N GKS++ N LA+K V+IV D+PG TRD + D LD E L+ DT GI Sbjct: 6 VAIVGRPNVGKSTIINGLAQKRVSIVEDLPGVTRDRIYCDAQWLDREFTLI---DTGGIE 62 Query: 278 -RETDDIVEKEGIK-RTFLEVENADLILLLKEI 308 RE D + +GI+ + L +E AD+IL + ++ Sbjct: 63 FREEADQIS-DGIRMQAQLAIEEADVILFVTDV 94 Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 49/88 (55%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + I+G N GKS+L N+L + ++V D GTTRD + +G + DTAG+R+ Sbjct: 178 RTAIVGRPNVGKSTLVNSLLGYERSLVADEMGTTRDAIDSLWTHKGKKFVLVDTAGMRKK 237 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLL 305 D+ +EK + R+ +++ D+ + + Sbjct: 238 NKIDEPLEKYSVIRSIRAIDDCDVAVFV 265 >gi|288803890|ref|ZP_06409315.1| ribosome-associated GTPase EngA [Prevotella melaninogenica D18] gi|288333655|gb|EFC72105.1| ribosome-associated GTPase EngA [Prevotella melaninogenica D18] Length = 437 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/85 (40%), Positives = 46/85 (54%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 + I+G N GKS+LFN L + AIV+D GTTRD G I DT G + ++ Sbjct: 5 VAIVGRPNVGKSTLFNRLTQTRHAIVSDTAGTTRDRQYGKCQWNGREFSIVDTGGWVVKS 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 DDI E K+ + E ADL+L + Sbjct: 65 DDIFEDAIRKQVLVATEEADLVLFV 89 Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G NAGKSS+ NA +D IVT+I GTTRD + G+ + DTAGIR Sbjct: 177 RFAVVGRPNAGKSSIINAFIGEDRNIVTEIAGTTRDSIYTRYTKFGFDFYLVDTAGIRRK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + + +E + R+ +EN+++ +L+ Sbjct: 237 NKVSEDLEFYSVMRSIRSIENSEVCILM 264 >gi|260893107|ref|YP_003239204.1| small GTP-binding protein [Ammonifex degensii KC4] gi|260865248|gb|ACX52354.1| small GTP-binding protein [Ammonifex degensii KC4] Length = 425 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 39/87 (44%), Positives = 53/87 (60%), Gaps = 6/87 (6%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAGIRET 280 I + G NAGKSSL NAL ++VAIV+D+PGTT D + ++ L V I DTAGI Sbjct: 14 IALFGRRNAGKSSLINALTGQEVAIVSDVPGTTTDPVAKAMEILPLGPVMIIDTAGI--- 70 Query: 281 DDIVEKEG--IKRTFLEVENADLILLL 305 DD+ E +K++F + DL LL+ Sbjct: 71 DDVGELGALRVKKSFEVLNRTDLALLV 97 >gi|321311009|ref|YP_004193338.1| GTP binding protein EngA [Mycoplasma haemofelis str. Langford 1] gi|319802853|emb|CBY93499.1| GTP binding protein EngA [Mycoplasma haemofelis str. Langford 1] Length = 436 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 44/145 (30%), Positives = 67/145 (46%), Gaps = 12/145 (8%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L I SH+ + ++ E KI I+G N GKSSL N+L K++ +V+++ GTTRD + Sbjct: 154 LLTSIVSHLGEEEIFEEEGERLKIAIIGRPNVGKSSLVNSLLKRERVLVSEVAGTTRDAI 213 Query: 259 TIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA-----DLILLLKEINSKKE 313 +D G + DT GI+ + E K + L + A LI +L E Sbjct: 214 DLDFSFNGKRYTLIDTPGIKRHSQMRVDEKEKYSVLRAQKAIARANTLIFMLDISEDLSE 273 Query: 314 IS-------FPKNIDFIFIGTKSDL 331 + F NI + + K DL Sbjct: 274 LDERVGGLIFKANIPTLIVANKWDL 298 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 +VI+G N GKS LFN L + A+V PG TRD +T++ ++DT G + Sbjct: 6 VVIIGKPNVGKSQLFNRLVGERHAVVFSEPGVTRDRITLECSWLHRSFLLTDTGGYTLDN 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++E ++T + ++ ADLIL L Sbjct: 66 YSFQQEINRQTEIALKEADLILFL 89 >gi|254458756|ref|ZP_05072180.1| GTPase family protein [Campylobacterales bacterium GD 1] gi|207084522|gb|EDZ61810.1| GTPase family protein [Campylobacterales bacterium GD 1] Length = 496 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/90 (36%), Positives = 55/90 (61%), Gaps = 2/90 (2%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 N KI I+G +N GKSSL NAL ++ ++V+ + GTT D + +D +G + DTAG+ Sbjct: 235 NHIKIAIIGRTNVGKSSLLNALLGEERSVVSSVAGTTIDPIDETIDYKGKQLTFVDTAGL 294 Query: 278 RETDDI--VEKEGIKRTFLEVENADLILLL 305 R I +EK + RT ++N+++ L++ Sbjct: 295 RRRGKILGIEKYALMRTTEMLDNSNMALIV 324 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/86 (43%), Positives = 51/86 (59%), Gaps = 3/86 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI I+G N GKSSLFN L KK AI +DI GTTRDV + + V++ DT G+ + Sbjct: 3 KIAIIGRPNVGKSSLFNRLVKKRDAITSDIAGTTRDVKRRNTVIINKEVELLDTGGLDKG 62 Query: 281 DDIVEKEGIKRTFLEVE-NADLILLL 305 ++ +K IK L+ AD+IL + Sbjct: 63 CELFDK--IKEMSLKAAYKADIILYM 86 >gi|67922213|ref|ZP_00515727.1| Small GTP-binding protein domain:GTP-binding [Crocosphaera watsonii WH 8501] gi|67855916|gb|EAM51161.1| Small GTP-binding protein domain:GTP-binding [Crocosphaera watsonii WH 8501] Length = 465 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 35/92 (38%), Positives = 49/92 (53%), Gaps = 3/92 (3%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R + I+G N GKSSL NA K AIV+ I GTTRD + ++ ++ DTAG Sbjct: 187 REEINVSIIGRPNVGKSSLLNAFLGKKRAIVSPISGTTRDAIDTVVERGEKTYRLIDTAG 246 Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLL 305 IR ++ E I R F + AD++LL+ Sbjct: 247 IRRKKNVNYGAEFFSINRAFKAIRRADVVLLV 278 Score = 40.8 bits (94), Expect = 0.47, Method: Compositional matrix adjust. Identities = 19/35 (54%), Positives = 22/35 (62%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 + I+G N GKS+ N LAK AIV D PG TRD Sbjct: 19 VAIIGRPNVGKSTFVNRLAKDRQAIVHDEPGITRD 53 >gi|154149467|ref|YP_001405674.1| GTP-binding protein EngA [Campylobacter hominis ATCC BAA-381] gi|166224322|sp|A7HZI3|DER_CAMHC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|153805476|gb|ABS52483.1| GTP-binding protein EngA [Campylobacter hominis ATCC BAA-381] Length = 460 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/87 (37%), Positives = 53/87 (60%), Gaps = 2/87 (2%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKSSL NAL K++ A+V+++ GTT D + + +++ DTAGIR+ Sbjct: 200 KVGIIGRVNVGKSSLLNALVKENRAVVSEVAGTTIDPVNENYTFNDKVIEFVDTAGIRKR 259 Query: 281 DDI--VEKEGIKRTFLEVENADLILLL 305 I +EK + RT +E D+ L++ Sbjct: 260 GKIEGIEKFALNRTEKILEQCDIALMV 286 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 49/85 (57%), Gaps = 1/85 (1%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K++++G N GKSSLFN K +AI +DI GTTRD +++ + D+ G+ ++ Sbjct: 3 KVILIGRPNVGKSSLFNRFVGKRIAITSDISGTTRDTNKTVIEIFDKKCILIDSGGLDDS 62 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 ++ K K T EV N D+IL + Sbjct: 63 SEMFAKVQAK-TLKEVRNCDIILFI 86 >gi|114332129|ref|YP_748351.1| GTP-binding protein EngA [Nitrosomonas eutropha C91] gi|122313190|sp|Q0AE46|DER_NITEC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|114309143|gb|ABI60386.1| small GTP-binding protein [Nitrosomonas eutropha C91] Length = 468 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 51/92 (55%), Gaps = 3/92 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I G N GKS+L N L ++ I D PGTTRD + ID + + DTAG+R + Sbjct: 181 IAIAGRPNVGKSTLINTLLGEERMIAFDQPGTTRDSIYIDFEYGQRRYTLIDTAGLRRSG 240 Query: 282 DI---VEKEGIKRTFLEVENADLILLLKEINS 310 + VEK + +T +E A++++L+ + S Sbjct: 241 KVWETVEKFSVVKTLQSIEAANVVVLVLDAQS 272 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 52/161 (32%), Positives = 78/161 (48%), Gaps = 34/161 (21%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID--LDLEGYLVKISDTAGIRE 279 +V++G N GKS+LFN L + AIV DIPG TRD L L+ YLV DT G Sbjct: 5 LVLVGRPNVGKSTLFNRLTRSRDAIVADIPGLTRDRHYGHGRLGLKPYLV--VDTGGF-- 60 Query: 280 TDDIVEKEGI-----KRTFLEVENADLILLLKEINSKKEISFPKNI----------DFIF 324 + V K GI ++T V+ AD++L + ++ ++ ++ I I Sbjct: 61 --EPVVKSGILHAMARQTLQAVDEADVVLFI--VDGRQGLASQDKIIADQLRKTGRKIIL 116 Query: 325 IGTKSD--LYSTYTEEYDHL-------ISSFTGEGLEELIN 356 + K++ YST E+ L +S+ GE L ELI+ Sbjct: 117 VVNKAEGMPYSTAAVEFHELGLGTPCVVSALHGEHLGELID 157 >gi|260753034|ref|YP_003225927.1| GTP-binding protein EngA [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552397|gb|ACV75343.1| small GTP-binding protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 454 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G NAGKS+L N L D I G TRD + ID +G V++ DTAG+R+ Sbjct: 191 QLAIVGRPNAGKSTLINRLIGVDRMITGPEAGITRDSIAIDWSWQGRPVRLIDTAGLRKK 250 Query: 281 DDIV---EKEGIKRTFLEVENADLILLL 305 +V E+ + TF ++ A++++LL Sbjct: 251 ARVVDKMERLSVMDTFRTIDYAEVVVLL 278 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/94 (36%), Positives = 50/94 (53%), Gaps = 1/94 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN L K +A+V D PG TRD D +L G ++ DTAG E + Sbjct: 4 VAIIGRPNVGKSTLFNRLVGKRLALVDDRPGVTRDRREGDAELIGMPFRVIDTAGF-EDE 62 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D G R E + + L I++++ I+ Sbjct: 63 DPASLPGRMRVQTEAAVKECDVALFVIDARQGIT 96 >gi|255326187|ref|ZP_05367273.1| ribosome-associated GTPase EngA [Rothia mucilaginosa ATCC 25296] gi|255296641|gb|EET75972.1| ribosome-associated GTPase EngA [Rothia mucilaginosa ATCC 25296] Length = 526 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 4/88 (4%) Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250 + L++IL ++ SQ E + ++ ++G N GKSSL N LA + A+V D+ Sbjct: 225 DALDEIL----EVMPEHSQFAQPEALGGPRRVALVGRPNVGKSSLLNKLAGSERAVVNDL 280 Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIR 278 GTTRD + ++L GY + DTAGIR Sbjct: 281 AGTTRDPIDEIIELGGYPWRFVDTAGIR 308 Score = 40.8 bits (94), Expect = 0.45, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 30/55 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 + I+G N GKS++ N + + A+V D PG TRD ++ + G + DT G Sbjct: 77 VAIVGRPNVGKSTIINRILGRREAVVEDKPGVTRDRVSYKAEWLGKSFTLVDTGG 131 >gi|167039341|ref|YP_001662326.1| small GTP-binding protein [Thermoanaerobacter sp. X514] gi|256752341|ref|ZP_05493202.1| small GTP-binding protein [Thermoanaerobacter ethanolicus CCSD1] gi|300913981|ref|ZP_07131298.1| small GTP-binding protein [Thermoanaerobacter sp. X561] gi|307725336|ref|YP_003905087.1| small GTP-binding protein [Thermoanaerobacter sp. X513] gi|166853581|gb|ABY91990.1| small GTP-binding protein [Thermoanaerobacter sp. X514] gi|256748752|gb|EEU61795.1| small GTP-binding protein [Thermoanaerobacter ethanolicus CCSD1] gi|300890666|gb|EFK85811.1| small GTP-binding protein [Thermoanaerobacter sp. X561] gi|307582397|gb|ADN55796.1| small GTP-binding protein [Thermoanaerobacter sp. X513] Length = 408 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 48/126 (38%), Positives = 70/126 (55%), Gaps = 11/126 (8%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAGIRET 280 I I G NAGKSSL NAL ++VA+V+D+ GTT D ++ ++ L V I DTAG+ +T Sbjct: 12 IAIFGRRNAGKSSLINALTNQEVALVSDVAGTTTDPVSKAMEILPIGPVVIIDTAGLDDT 71 Query: 281 DDIVEKEGIKRTFLEVENADLILL-------LKEINSKK-EISFPKNIDFIFIGTKSDLY 332 ++ E +K+T+ + DL +L L E +I KNI + + K DL Sbjct: 72 GELGELR-VKKTYEVLNRTDLAILVIDGTIGLSEFEENVLKIIRDKNIPVVGVINKKDL- 129 Query: 333 STYTEE 338 S Y+EE Sbjct: 130 SQYSEE 135 >gi|167036672|ref|YP_001664250.1| small GTP-binding protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320115099|ref|YP_004185258.1| small GTP-binding protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166855506|gb|ABY93914.1| small GTP-binding protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319928190|gb|ADV78875.1| small GTP-binding protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 408 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 48/126 (38%), Positives = 70/126 (55%), Gaps = 11/126 (8%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAGIRET 280 I I G NAGKSSL NAL ++VA+V+D+ GTT D ++ ++ L V I DTAG+ +T Sbjct: 12 IAIFGRRNAGKSSLINALTNQEVALVSDVAGTTTDPVSKAMEILPIGPVVIIDTAGLDDT 71 Query: 281 DDIVEKEGIKRTFLEVENADLILL-------LKEINSKK-EISFPKNIDFIFIGTKSDLY 332 ++ E +K+T+ + DL +L L E +I KNI + + K DL Sbjct: 72 GELGELR-VKKTYEVLNRTDLAILVIDGTIGLSEFEENVLKIIRDKNIPVVGVINKKDL- 129 Query: 333 STYTEE 338 S Y+EE Sbjct: 130 SQYSEE 135 >gi|50365015|ref|YP_053440.1| GTP-binding protein EngA [Mesoplasma florum L1] gi|81695689|sp|Q6F1R7|DER_MESFL RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|50363571|gb|AAT75556.1| GTP-binding protein, cell cycle control [Mesoplasma florum L1] Length = 435 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/91 (37%), Positives = 52/91 (57%), Gaps = 3/91 (3%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 N ++ I+G N GKSSL N+L ++ IV+DIPGTT D + + + + DTAGI Sbjct: 173 NRTRVSIIGRPNVGKSSLVNSLIGEERMIVSDIPGTTLDAVDSVVKVNNIEYTLIDTAGI 232 Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLL 305 R+ I VEK R+ + +D++LL+ Sbjct: 233 RKKSKIFQNVEKYSYLRSLTTINGSDVVLLM 263 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 44/84 (52%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKSSLFN + ++ +IV D PG TRD + + + DT GI D Sbjct: 6 VAIVGRPNVGKSSLFNRIIREKKSIVEDTPGVTRDRIYGTAEWLTREFIVIDTGGITLED 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 KE + + +E AD+I+ L Sbjct: 66 QPFAKEIKVQAEIAMEEADVIVFL 89 >gi|319407564|emb|CBI81214.1| GTP-binding protein [Bartonella sp. 1-1C] Length = 477 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 85/183 (46%), Gaps = 23/183 (12%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS+LFN L + +A+V D PG TRD L+ + DTAG+ E D Sbjct: 5 IAIVGRPNVGKSTLFNRLVGQKLALVDDQPGVTRDRRIHSAKLQDLHFDVIDTAGLEEAD 64 Query: 282 D-IVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKNI-----DFIFIGTKSDLY 332 + +E +T + ++ ADLIL + + S + ++ F I + + KS+ Sbjct: 65 NHTLEGRMRAQTKIAIDEADLILFVLDAKSGITRSDLDFSSLIRKSGKPIVLVSNKSESK 124 Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKI-KSILSNKFKKLPFSIPSHKRHLYH 382 EY+ IS+ G GL +L + I +I ++K F++ K Y Sbjct: 125 IAIAGEYEAWSLGLGEPCPISAEHGHGLSDLRDAIVAAIGADKV----FNLRQEKEKTYT 180 Query: 383 LSQ 385 +Q Sbjct: 181 TTQ 183 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 39/66 (59%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I ++G N GKS+L N++ K+D + G TRD +++D + +K+ DTAG+R Sbjct: 208 RIAVIGRPNTGKSTLINSMLKQDRLLTGPEAGITRDSISVDWEWNNRRIKLFDTAGLRRK 267 Query: 281 DDIVEK 286 + EK Sbjct: 268 SKVQEK 273 >gi|313683277|ref|YP_004061015.1| ribosome-associated GTPase enga [Sulfuricurvum kujiense DSM 16994] gi|313156137|gb|ADR34815.1| ribosome-associated GTPase EngA [Sulfuricurvum kujiense DSM 16994] Length = 511 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 35/90 (38%), Positives = 52/90 (57%), Gaps = 2/90 (2%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 N K+ I+G N GKSSL NAL +D ++V+ + GTT D + ++ + DTAGI Sbjct: 238 NQMKVAIIGRVNVGKSSLLNALLGEDRSVVSSVAGTTIDPIDETVEYNDKKITFIDTAGI 297 Query: 278 RETDDI--VEKEGIKRTFLEVENADLILLL 305 R+ I +EK + RT +E AD+ LL+ Sbjct: 298 RKRGKILGIEKYALMRTEEMLETADIALLV 327 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 36/89 (40%), Positives = 54/89 (60%), Gaps = 9/89 (10%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV---LTIDLDLEGYLVKISDTAGI 277 K+ I+G N GKSSLFN L K+ AI ++ GTTRDV + + +D E V+I DT G+ Sbjct: 3 KLAIIGRPNVGKSSLFNRLLKQRDAITSEQAGTTRDVKKRVAVVVDKE---VEILDTGGL 59 Query: 278 RETDDIVEKEGIKRTFLEVEN-ADLILLL 305 E ++ ++ IK L+ + AD+IL + Sbjct: 60 DEGCELYDR--IKEKSLKAAHEADIILFM 86 >gi|303232074|ref|ZP_07318777.1| ribosome-associated GTPase EngA [Veillonella atypica ACS-049-V-Sch6] gi|302513180|gb|EFL55219.1| ribosome-associated GTPase EngA [Veillonella atypica ACS-049-V-Sch6] Length = 444 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/87 (37%), Positives = 51/87 (58%), Gaps = 3/87 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--- 278 + I+G N GKSSL NAL +D IV+D+ GTTRD + + DTAG+R Sbjct: 181 VAIIGRPNVGKSSLTNALLGQDRVIVSDVAGTTRDSIDTHWTHGDQKFVLIDTAGMRRKS 240 Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL 305 + D+ VE+ I R+ V+ +D+++L+ Sbjct: 241 KIDEAVERYSIVRSLRSVDRSDIVVLV 267 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 3/87 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--- 278 + ++G N GKS+LFNA+ K ++IV DIPG TRD + D + + DT GI Sbjct: 6 VAVVGRPNVGKSTLFNAIVNKRISIVEDIPGVTRDRIYFDAEWLNREFTMIDTGGIEFVT 65 Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL 305 E ++ K + L +E AD+IL + Sbjct: 66 ENSHVIPKMMRLQAELAIEEADVILFV 92 >gi|241761000|ref|ZP_04759089.1| small GTP-binding protein [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241374619|gb|EER64080.1| small GTP-binding protein [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 454 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G NAGKS+L N L D I G TRD + ID +G V++ DTAG+R+ Sbjct: 191 QLAIVGRPNAGKSTLINRLIGVDRMITGPEAGITRDSIAIDWSWQGRPVRLIDTAGLRKK 250 Query: 281 DDIV---EKEGIKRTFLEVENADLILLL 305 +V E+ + TF ++ A++++LL Sbjct: 251 ARVVDKMERLSVMDTFRTIDYAEVVVLL 278 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/94 (36%), Positives = 50/94 (53%), Gaps = 1/94 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN L K +A+V D PG TRD D +L G ++ DTAG E + Sbjct: 4 VAIIGRPNVGKSTLFNRLVGKRLALVDDRPGVTRDRREGDAELIGMPFRVIDTAGF-EDE 62 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D G R E + + L I++++ I+ Sbjct: 63 DPASLPGRMRVQTEAAVKECDVALFVIDARQGIT 96 >gi|148653556|ref|YP_001280649.1| GTP-binding protein EngA [Psychrobacter sp. PRwf-1] gi|172048545|sp|A5WGA8|DER_PSYWF RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|148572640|gb|ABQ94699.1| small GTP-binding protein [Psychrobacter sp. PRwf-1] Length = 473 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 54/92 (58%), Gaps = 3/92 (3%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 + G K+ I+G N GKS+L N + ++ +V D+PGTTRD + I + G + DTAG Sbjct: 175 QGGLKLAIIGRPNVGKSTLVNRMLGEERVVVYDMPGTTRDSIYIPFERNGKNYVLIDTAG 234 Query: 277 IRET---DDIVEKEGIKRTFLEVENADLILLL 305 +R D+ VEK + + +++A++++ + Sbjct: 235 VRRRGRIDEKVEKFSVIKALQAIKDANVVVAV 266 Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 32/61 (52%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS++FN + K A+V D+ G TRD D + DT GI E D Sbjct: 7 VALIGRPNVGKSTIFNQMTKTRQALVADLSGLTRDRQYGDATYNNKSFVVIDTGGIGEAD 66 Query: 282 D 282 D Sbjct: 67 D 67 >gi|122701507|emb|CAL88143.1| GTPase [Helicobacter pylori] Length = 170 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L + V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNDHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|291320054|ref|YP_003515312.1| GTP binding protein era [Mycoplasma agalactiae] gi|290752383|emb|CBH40354.1| GTP binding protein era [Mycoplasma agalactiae] Length = 290 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 50/88 (56%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSL N + K D+AIV+++P TTRD + +GY DT GI + Sbjct: 6 ISILGRPNVGKSSLLNKIIKYDLAIVSNVPQTTRDQIMGVYTEDGYQFVFVDTPGIHKPL 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN 309 +++ + K F +++ D +L L +N Sbjct: 66 NLLGESLNKEAFSSLKDIDCVLFLSPVN 93 >gi|303229883|ref|ZP_07316659.1| ribosome-associated GTPase EngA [Veillonella atypica ACS-134-V-Col7a] gi|302515439|gb|EFL57405.1| ribosome-associated GTPase EngA [Veillonella atypica ACS-134-V-Col7a] Length = 444 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/87 (37%), Positives = 51/87 (58%), Gaps = 3/87 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--- 278 + I+G N GKSSL NAL +D IV+D+ GTTRD + + DTAG+R Sbjct: 181 VAIIGRPNVGKSSLTNALLGQDRVIVSDVAGTTRDSIDTHWTHGDQKFVLIDTAGMRRKS 240 Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL 305 + D+ VE+ I R+ V+ +D+++L+ Sbjct: 241 KIDEAVERYSIVRSLRSVDRSDIVVLV 267 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 3/87 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--- 278 + ++G N GKS+LFNA+ K ++IV DIPG TRD + D + + DT GI Sbjct: 6 VAVVGRPNVGKSTLFNAIVNKRISIVEDIPGVTRDRIYFDAEWLNREFTMIDTGGIEFVT 65 Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL 305 E ++ K + L +E AD+IL + Sbjct: 66 ENSHVIPKMMRLQAELAIEEADVILFV 92 >gi|4467661|emb|CAB37782.1| GTP-binding protein homologue [Helicobacter pylori] Length = 170 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 28/56 (50%), Positives = 38/56 (67%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L G+ V++ DT G+ Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM 65 >gi|56551349|ref|YP_162188.1| GTP-binding protein EngA [Zymomonas mobilis subsp. mobilis ZM4] gi|56542923|gb|AAV89077.1| small GTP-binding protein [Zymomonas mobilis subsp. mobilis ZM4] Length = 454 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G NAGKS+L N L D I G TRD + ID +G V++ DTAG+R+ Sbjct: 191 QLAIVGRPNAGKSTLINRLIGVDRMITGPEAGITRDSIAIDWSWQGRPVRLIDTAGLRKK 250 Query: 281 DDIV---EKEGIKRTFLEVENADLILLL 305 +V E+ + TF ++ A++++LL Sbjct: 251 ARVVDKMERLSVMDTFRTIDYAEVVVLL 278 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 27/60 (45%), Positives = 36/60 (60%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN L K +A+V D PG TRD D +L G ++ DTAG + D Sbjct: 4 VAIIGRPNVGKSTLFNRLVGKRLALVDDRPGVTRDRREGDAELIGMPFRVIDTAGFEDED 63 >gi|255037605|ref|YP_003088226.1| small GTP-binding protein [Dyadobacter fermentans DSM 18053] gi|254950361|gb|ACT95061.1| small GTP-binding protein [Dyadobacter fermentans DSM 18053] Length = 436 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 7/90 (7%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I I+G N GKSS N L D +IVTDI GTTRD + + G ++DTAGIR Sbjct: 178 RIAIMGRPNVGKSSFLNVLTGTDRSIVTDIAGTTRDAIHTHYNAFGMNFILTDTAGIRRK 237 Query: 281 DDIVEKEGIK-----RTFLEVENADLILLL 305 + KE I+ R+ +E +D+ ++L Sbjct: 238 SRV--KEDIEFYSTLRSVKAMEESDVCIVL 265 >gi|327470401|gb|EGF15857.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK330] Length = 436 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 79/157 (50%), Gaps = 33/157 (21%) Query: 214 EIIRNG--YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVK 270 E+++N K ++G N GKSSL NA+ +D I + + GTTRD + T+ D EG Sbjct: 167 EVVKNPDMIKFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTVFTDSEGQEFT 226 Query: 271 ISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGT 327 + DTAG+R++ + EK + R ++ +D++L++ +N+++ I Sbjct: 227 MIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEGI------------- 271 Query: 328 KSDLYSTYTEEYDHLISSF---TGEGLEELINKIKSI 361 EYD I+ F G+G+ ++NK ++ Sbjct: 272 ---------REYDKRIAGFAHEAGKGIVIVVNKWDTL 299 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 45/84 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS+LFN +A + ++IV D+ G TRD + I DT GI + D Sbjct: 6 IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATASWLNRKFSIIDTGGIDDVD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + + ++ AD+I+ + Sbjct: 66 APFMEQIKHQAEIAMDEADVIVFV 89 >gi|302846043|ref|XP_002954559.1| hypothetical protein VOLCADRAFT_121318 [Volvox carteri f. nagariensis] gi|300260231|gb|EFJ44452.1| hypothetical protein VOLCADRAFT_121318 [Volvox carteri f. nagariensis] Length = 269 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/91 (37%), Positives = 52/91 (57%), Gaps = 7/91 (7%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIR-- 278 + I+G N GKSSL NA+A ++ +IV D+ GTTRD + + L G + + DTAGIR Sbjct: 52 VAIVGRPNVGKSSLLNAIAGEERSIVCDLSGTTRDAVDTRVTLPGGQRLTLIDTAGIRKR 111 Query: 279 ----ETDDIVEKEGIKRTFLEVENADLILLL 305 ++ D E+ + R V AD+ +L+ Sbjct: 112 SRVADSPDGAEQLSVDRAMRAVRRADVAVLV 142 >gi|122702313|emb|CAL88347.1| GTPase [Helicobacter pylori] Length = 170 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L + V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNDHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|317051076|ref|YP_004112192.1| ribosome-associated GTPase EngA [Desulfurispirillum indicum S5] gi|316946160|gb|ADU65636.1| ribosome-associated GTPase EngA [Desulfurispirillum indicum S5] Length = 457 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 35/86 (40%), Positives = 49/86 (56%), Gaps = 2/86 (2%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFN +AKK +AIV DIPG TRD D++ E I DT G ET Sbjct: 7 VCIIGRPNVGKSTLFNRIAKKRIAIVEDIPGVTRDRNYHDVEWEDKEFTIVDTGGFESET 66 Query: 281 -DDIVEKEGIKRTFLEVENADLILLL 305 +E +++T + AD ++ L Sbjct: 67 GKGSLEASMVEQTGIAAAEADRVIFL 92 Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 4/89 (4%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKSSL N + ++ + +++PGTTRD + + EG + DTAGIR Sbjct: 186 KVAIVGRPNVGKSSLVNKICGENRVVASEVPGTTRDTIHTPVRREGRDFILLDTAGIRRK 245 Query: 281 DDI----VEKEGIKRTFLEVENADLILLL 305 +E+ + R+ +E A +++L+ Sbjct: 246 SKAYSENLERYSVFRSITAIEEAHVVILM 274 >gi|327440787|dbj|BAK17152.1| predicted GTPase [Solibacillus silvestris StLB046] Length = 436 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 35/110 (31%), Positives = 57/110 (51%), Gaps = 3/110 (2%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L ++ + H Q + + K ++G N GKSSL NA +D IV++I GTTRD + Sbjct: 155 LLDECAKHFPQPDEEQYDDDTIKFSLIGRPNVGKSSLVNAFLGQDRVIVSEIQGTTRDAI 214 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305 +G I DTAG+R+ + EK + R +E +D++L++ Sbjct: 215 DSPYSYDGQDYVIIDTAGMRKKGKVYESTEKYSVLRALRAIERSDVVLVV 264 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS++FN + + V+IV DIPG TRD + D + I DT GI D Sbjct: 6 IAIVGRPNVGKSTIFNRIVGERVSIVEDIPGVTRDRIYSSADWLAHEFNIIDTGGIEIGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + ++ ++ + ++ AD+I+ + Sbjct: 66 EPFLEQIRQQAEIAIDEADVIIFM 89 >gi|225570488|ref|ZP_03779513.1| hypothetical protein CLOHYLEM_06589 [Clostridium hylemonae DSM 15053] gi|225160685|gb|EEG73304.1| hypothetical protein CLOHYLEM_06589 [Clostridium hylemonae DSM 15053] Length = 442 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I I+G N GKSS+ N L + IV+D+ GTTRD + ++ G DTAG+R Sbjct: 179 RIAIVGKPNVGKSSIVNKLLGEQRVIVSDVAGTTRDAIDTEIIHGGREYVFIDTAGLRRK 238 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 I +E+ I RT VE AD++L++ Sbjct: 239 SKIKEELERYSIIRTVTAVERADVVLVV 266 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 32/93 (34%), Positives = 55/93 (59%), Gaps = 7/93 (7%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID---LDLEGYLVKISDTAGIR 278 + I+G N GKS+LFN LA + ++IV D PG TRD + + LD E L+ DT GI Sbjct: 6 VAIVGRPNVGKSTLFNVLAGEMISIVKDTPGVTRDRIYAEVSWLDKEFTLI---DTGGIE 62 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINS 310 E+ D++ + ++ + ++ AD+I+ + ++ Sbjct: 63 PESKDVILSQMREQAQIAIDTADVIVFITDVRQ 95 >gi|297559956|ref|YP_003678930.1| ribosome-associated GTPase EngA [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844404|gb|ADH66424.1| ribosome-associated GTPase EngA [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 478 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 50/177 (28%), Positives = 85/177 (48%), Gaps = 27/177 (15%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I +LG N GKSSL N LA +D +V + GTTRD + ++L G K DTAGIR Sbjct: 199 RIALLGRPNVGKSSLLNRLAGEDRVVVDAVAGTTRDAVDELIELGGKTWKFIDTAGIRRR 258 Query: 281 DDIVEKE---GIKRTFLEVENADLILLLKEIN---SKKEISFPKNI-----DFIFIGTKS 329 ++ RT +E A+ ++L +++ ++++I + + + K Sbjct: 259 FRALQGADYYATMRTGTALERAEAAVVLMDVSEPLAEQDIRVVEQVVEAGRGLVLAFNKW 318 Query: 330 DL----YSTYTE-EYDHL-----------ISSFTGEGLEELINKIKSILSNKFKKLP 370 D+ TY E E D +S+ TG +E+L+ I++ LS +++P Sbjct: 319 DILDEERRTYLEKEIDRQLARVSWAPRVNVSAKTGRHMEKLVPAIETSLSGWNQRIP 375 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 29/104 (27%), Positives = 48/104 (46%) Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261 DIS + G E + ++G N GKSSL N + + A+V D+PG TRD + D Sbjct: 5 DISDVVHGGADAEEPATLPVVAVVGRPNVGKSSLVNRIIGRREAVVEDVPGVTRDRVAYD 64 Query: 262 LDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 + + + DT G + + ++ + AD+IL + Sbjct: 65 AEWQNTRFTLVDTGGWETSVSGLAAMVARQAEYAAQTADVILFV 108 >gi|295098886|emb|CBK87975.1| ribosome-associated GTPase EngA [Eubacterium cylindroides T2-87] Length = 329 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 33/85 (38%), Positives = 50/85 (58%), Gaps = 3/85 (3%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 ++G N GKSSL NA+ K+D IV++I GTTRD + ++ I DTAGIR+ I Sbjct: 179 VIGRPNVGKSSLVNAILKEDRVIVSNIEGTTRDAIDTPFKVDDKEYMIIDTAGIRKRGKI 238 Query: 284 ---VEKEGIKRTFLEVENADLILLL 305 +EK I R +E ++++L + Sbjct: 239 YENIEKYSILRAMNAIERSNVVLFV 263 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 3/92 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN L + +IV D PG TRD + ++ I DT GI+ D Sbjct: 6 VAIVGRPNVGKSTIFNRLIGERKSIVDDTPGVTRDRIYGTVEWLTQSFHIIDTGGIQIED 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE 313 +E + + +E AD+I+ I S KE Sbjct: 66 QPFSEEINMQVDIAIEEADVIIF---ITSAKE 94 >gi|283770547|ref|ZP_06343439.1| GTP-binding protein engA [Staphylococcus aureus subsp. aureus H19] gi|283460694|gb|EFC07784.1| GTP-binding protein engA [Staphylococcus aureus subsp. aureus H19] Length = 436 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSL NA+ +D IV+++ GTTRD + + EG + DTAG+R+ Sbjct: 177 RLSIIGRPNVGKSSLVNAILGEDRVIVSNVAGTTRDAIDTEYSYEGQDYVLIDTAGMRKK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + EK + R +E ++++L++ Sbjct: 237 GKVYESTEKYSVLRALKAIERSNVVLVV 264 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 45/84 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN + + V+IV D PG TRD + + Y I DT GI D Sbjct: 6 VAIVGRPNVGKSTIFNRIVGERVSIVEDTPGVTRDRIYSSGEWLTYDFNIIDTGGIEIGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + + + ++ AD+I+ + Sbjct: 66 APFQTQIRAQAEIAIDEADVIIFM 89 >gi|302383643|ref|YP_003819466.1| ribosome-associated GTPase EngA [Brevundimonas subvibrioides ATCC 15264] gi|302194271|gb|ADL01843.1| ribosome-associated GTPase EngA [Brevundimonas subvibrioides ATCC 15264] Length = 537 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 37/105 (35%), Positives = 63/105 (60%), Gaps = 6/105 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE- 279 K+ I+G N GKS+LFN L K +A+V D PG TRD + + + + DTAG + Sbjct: 4 KLAIVGRPNVGKSTLFNRLVGKRLALVDDRPGVTRDRRYAEGSIGDMDLTLIDTAGYEDV 63 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF 324 +DD +E ++T L +E+ DLIL + +++++ ++ ++D IF Sbjct: 64 SDDSLESRMREQTELALEDGDLILFM--MDAREGVT---SLDRIF 103 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I I+G NAGKS+L N L +D + G TRD +++D + EG +++ DTAG+R Sbjct: 179 RIAIIGRPNAGKSTLINHLIGEDRLLTGPEAGITRDSISVDWEYEGQNIRLVDTAGMRRK 238 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +EK + T + A++++L+ Sbjct: 239 ARVQEKLEKLSVADTIRAITYAEVVVLV 266 >gi|282916742|ref|ZP_06324500.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus D139] gi|282319229|gb|EFB49581.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus D139] Length = 436 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSL NA+ +D IV+++ GTTRD + + EG + DTAG+R+ Sbjct: 177 RLSIIGRPNVGKSSLVNAILGEDRVIVSNVAGTTRDAIDTEYSYEGQDYVLIDTAGMRKK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + EK + R +E ++++L++ Sbjct: 237 GKVYESTEKYSVLRALKAIERSNVVLVV 264 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 45/84 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN + + V+IV D PG TRD + + + I DT GI D Sbjct: 6 VAIVGRPNVGKSTIFNRIVGERVSIVEDTPGVTRDRIYSSGEWLTHDFNIIDTGGIEIGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + + + ++ AD+I+ + Sbjct: 66 APFQTQIRAQAEIAIDEADVIIFM 89 >gi|116515306|ref|YP_802935.1| EngA [Buchnera aphidicola str. Cc (Cinara cedri)] gi|116257160|gb|ABJ90842.1| GTP-binding protein [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 449 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 4/88 (4%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI---- 277 I ++G SN GKSSLFN L A+ +D+P TTRD L ++ + I DTAGI Sbjct: 5 IALIGKSNVGKSSLFNLLTNSKSALTSDLPSTTRDRQYGFLKIKEKKINIIDTAGINNIK 64 Query: 278 RETDDIVEKEGIKRTFLEVENADLILLL 305 R+ +++EK+ K+T L ++ LI L Sbjct: 65 RKFFNLIEKQAYKQTILAIQEFHLIFFL 92 Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 62/132 (46%), Gaps = 27/132 (20%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI--- 277 KI LG +NAGKS+L N+L + I + TTRD++ I L + +DTAGI Sbjct: 187 KICFLGKTNAGKSTLINSLLNSNRVITSSTKNTTRDMIEISLINKKIKYIFTDTAGINKK 246 Query: 278 ------------RETDDIVEKEGIK----RTFLEVENADLILLLKEINSKKEISFPKNID 321 +++ D+V+K I +++ + + DL ++ IN +N+ Sbjct: 247 RKKKDFLNYIFEKKSFDVVKKNQIAIIVIDSYVGISSKDLSIITFLIN--------QNVA 298 Query: 322 FIFIGTKSDLYS 333 F I K DL S Sbjct: 299 FFIIFNKWDLIS 310 >gi|85373044|ref|YP_457106.1| GTP-binding protein EngA [Erythrobacter litoralis HTCC2594] gi|84786127|gb|ABC62309.1| predicted GTPase [Erythrobacter litoralis HTCC2594] Length = 485 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 39/96 (40%), Positives = 52/96 (54%), Gaps = 5/96 (5%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 ++I+G N GKS+LFN L K +A+V D PG TRD D +L G + DTAG E D Sbjct: 9 VIIIGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDRRMGDAELAGMEFTVVDTAGW-EDD 67 Query: 282 DIVEKEGIKRTFLEV--ENADLILLLKEINSKKEIS 315 D G R EV E AD L + I+++ I+ Sbjct: 68 DKDSLPGRMRAQTEVSLEGADAALFV--IDARAGIT 101 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 45/185 (24%), Positives = 85/185 (45%), Gaps = 35/185 (18%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL------EGYLVKISDT 274 K+ I+G NAGKS+L N L +D + G TRD +++D E +++ DT Sbjct: 200 KLAIVGRPNAGKSTLINRLLGEDRLLTGPEAGITRDSISVDWQWTDPKSGEPRDIRLIDT 259 Query: 275 AGIRETDDI---VEKEGIKRTFLEVENADLILLLKE-----------INSK--------- 311 AG+R+ + +EK + F V+ A++++LL + I SK Sbjct: 260 AGMRKRARVTEKLEKLSVADAFRAVDFAEVVVLLLDATQGLEHQDLKIASKVLEEGRALM 319 Query: 312 ---KEISFPKNIDFIFIGTKSDLYSTYTEEYD---HLISSFTGEGLEELINKIKSILSNK 365 + ++ ++F G ++ L ++ +S+ TG+GL+E++ I + Sbjct: 320 IAINKWDIAEDASYLFNGIRAALDEGLSQVRGLPLFAVSAKTGKGLDEMLRAAFEIRESW 379 Query: 366 FKKLP 370 K++P Sbjct: 380 SKRVP 384 >gi|115525346|ref|YP_782257.1| GTP-binding protein EngA [Rhodopseudomonas palustris BisA53] gi|122295592|sp|Q07LA7|DER_RHOP5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|115519293|gb|ABJ07277.1| small GTP-binding protein [Rhodopseudomonas palustris BisA53] Length = 460 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 46/186 (24%), Positives = 83/186 (44%), Gaps = 29/186 (15%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273 E + ++ I+G NAGKS++ N L ++ + + GTTRD + + +D +G +I D Sbjct: 183 EFSKRPIRVAIVGRPNAGKSTMINHLLGEERLLTSPEAGTTRDSIAVSVDYKGRQFRIFD 242 Query: 274 TAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI------- 323 TAG+R I +EK + V A++++L+ + +K E + D I Sbjct: 243 TAGLRRRSRIEEKLEKLSVADALRAVRFAEVVVLMLDAQTKFEEQDLRIADLIEREGRAL 302 Query: 324 -FIGTKSDLYSTYT-------EEYDHL-----------ISSFTGEGLEELINKIKSILSN 364 K DL + E DH +S GEG++ L++ I+ + Sbjct: 303 VIAVNKWDLVERHPGQIGALRTEADHWLPQVKGVPIVAVSGLMGEGIDRLMSAIEDSYAT 362 Query: 365 KFKKLP 370 +++P Sbjct: 363 WNRRVP 368 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 18/161 (11%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 + I+G N GKS+LFN L + +A+V D PG TRD + L + DTAG+ E Sbjct: 3 FTFAIIGRPNVGKSTLFNRLVGQKLALVDDTPGVTRDRREGEGRLGDLEFTLIDTAGLDE 62 Query: 280 TDDIVEKEGI-KRTFLEVENADLILLLKEI------NSKKEISFPK--NIDFIFIGTKSD 330 E + ++T +E AD ++ + + N + F + N I + KS+ Sbjct: 63 GAKGSLTERMQQQTETAIELADALMFVFDARAGLTPNDRAFADFARRANKPVILVANKSE 122 Query: 331 LYS---TYTEEY-----DHL-ISSFTGEGLEELINKIKSIL 362 + E Y D + IS+ GEGL EL + ++++ Sbjct: 123 GKAGEIGAMESYALGLGDPVQISAEHGEGLSELYDAFRALM 163 >gi|307564580|ref|ZP_07627120.1| ribosome-associated GTPase EngA [Prevotella amnii CRIS 21A-A] gi|307346738|gb|EFN92035.1| ribosome-associated GTPase EngA [Prevotella amnii CRIS 21A-A] Length = 437 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G NAGKSSL N+ ++ IVT+I GTTRD + + G+ + DTAGIR Sbjct: 177 RFAVVGRPNAGKSSLINSFIGEERNIVTEIAGTTRDSIYTRYNKFGFDFYLVDTAGIRRK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + + +E + R+ +EN+D+ +L+ Sbjct: 237 NKVSEDLEFYSVMRSIRSIENSDVCILM 264 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 + I+G N GKS+LFN L K AIV+D+ GTTRD G + DT G + ++ Sbjct: 5 VAIVGRPNVGKSTLFNRLTKTRHAIVSDVAGTTRDRQYGKCLWNGREFSVVDTGGWVVKS 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 DDI E ++ + E AD++L L Sbjct: 65 DDIFEDAIRQQVLVATEEADIVLFL 89 >gi|218516154|ref|ZP_03512994.1| GTP-binding protein EngA [Rhizobium etli 8C-3] Length = 284 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/87 (39%), Positives = 48/87 (55%), Gaps = 1/87 (1%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 + + I+G N GKS+LFN L K +A+V D PG TRD D L G I DTAG+ E Sbjct: 3 FTVAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGDARLMGLTFTIIDTAGLEE 62 Query: 280 TD-DIVEKEGIKRTFLEVENADLILLL 305 D + ++ +T ++ ADL L + Sbjct: 63 ADEESLQGRMRAQTEAAIDEADLSLFV 89 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 38/66 (57%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G NAGKS+L N +D + G TRD ++++ D G +K+ DTAG+R Sbjct: 204 RVAIVGRPNAGKSTLINRFLGEDRLLTGPEAGITRDSISVEWDWRGRTIKMFDTAGMRRK 263 Query: 281 DDIVEK 286 + EK Sbjct: 264 ARVTEK 269 >gi|147677944|ref|YP_001212159.1| GTP-binding protein EngA [Pelotomaculum thermopropionicum SI] gi|189037152|sp|A5D1U6|DER_PELTS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|146274041|dbj|BAF59790.1| predicted GTPase [Pelotomaculum thermopropionicum SI] Length = 440 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 33/87 (37%), Positives = 51/87 (58%), Gaps = 5/87 (5%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI--RE 279 + I+G N GKS+LFN + VAIV PG TRD L D + G + DT G+ +E Sbjct: 6 VAIVGRPNVGKSTLFNRIVGNRVAIVEGEPGVTRDRLYQDAEWSGRSFTLVDTGGLDFKE 65 Query: 280 TDDIVEKEGIKRTF-LEVENADLILLL 305 +D+I+ +G++R + + AD +LL+ Sbjct: 66 SDEII--QGVRRQAEIAIREADAVLLV 90 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 3/82 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI ++G N GKSSL N + ++ IV+++PGTTRD + + G I DTAG+R Sbjct: 178 KIAVIGRPNVGKSSLVNLILGEERVIVSNVPGTTRDAIDTPFEANGRHYVIIDTAGMRRK 237 Query: 281 ---DDIVEKEGIKRTFLEVENA 299 D EK G+ R ++ + Sbjct: 238 SRIDRPTEKYGVIRALRAIDRS 259 >gi|318042374|ref|ZP_07974330.1| ferrous iron transport protein B [Synechococcus sp. CB0101] Length = 599 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 39/148 (26%), Positives = 69/148 (46%), Gaps = 4/148 (2%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + +LG N GKS+LFN L A + + PG T D++ DL+L G+ +++ D GI + Sbjct: 4 VAVLGMPNTGKSTLFNRLTGHH-AHIGNWPGLTVDLMQADLELAGHHLQLIDLPGIYDLR 62 Query: 282 DIVEKEGIKRTFLEVENADLIL-LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD 340 + + E + R FLE DL+L +L +++ + +G + L +E Sbjct: 63 GLSDDEAVVRRFLEQTPVDLVLVVLNASQLDRQLRLALQVQ--QLGCPAVLALNMADEAA 120 Query: 341 HLISSFTGEGLEELINKIKSILSNKFKK 368 L E + + LS K+++ Sbjct: 121 RFGVRINASALSEAVGQPVLPLSAKYRQ 148 >gi|163867849|ref|YP_001609053.1| GTP-binding protein EngA [Bartonella tribocorum CIP 105476] gi|189037137|sp|A9IQH4|DER_BART1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|161017500|emb|CAK01058.1| GTP-binding protein [Bartonella tribocorum CIP 105476] Length = 474 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 75/158 (47%), Gaps = 24/158 (15%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET- 280 I I+G N GKS+LFN L + +A+V D PG TRD L+ + DTAG+ E Sbjct: 5 IAIVGRPNVGKSTLFNRLVGQKLALVDDKPGVTRDRRIHAAKLQDLRFDVIDTAGLEEAG 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF-----------IFIGTKS 329 D +E +T ++ ADLIL + ++K I+ P +++F + + KS Sbjct: 65 DHTLEGRMRSQTKAAIDEADLILFV--FDAKSGIT-PSDLNFASLVRKSGKPIVLVANKS 121 Query: 330 DLYSTYTEEYDHL---------ISSFTGEGLEELINKI 358 + + EY+ IS+ G GL +L + I Sbjct: 122 ESKAATGGEYEAWSLGLGEPCPISAEHGLGLSDLRDAI 159 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 39/66 (59%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I I G N GKS+L N++ K+D + G TRD +++D + G +K+ DTAG+R Sbjct: 205 RIAIAGRPNTGKSTLINSMLKQDRLLTGPEAGLTRDSISVDWEWRGRHIKLFDTAGLRRK 264 Query: 281 DDIVEK 286 I EK Sbjct: 265 SKIQEK 270 >gi|18075577|emb|CAD11184.1| GTP-binding protein [Helicobacter pylori] gi|122702815|emb|CAL88597.1| GTPase [Helicobacter pylori] Length = 170 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 38/96 (39%), Positives = 56/96 (58%), Gaps = 4/96 (4%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ +AI +D GTTRD+ + L + V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNDHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEI 314 ++ KE + +DLIL + K I S ++I Sbjct: 69 ALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDI 104 >gi|304440203|ref|ZP_07400093.1| ribosome-associated GTPase EngA [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371252|gb|EFM24868.1| ribosome-associated GTPase EngA [Peptoniphilus duerdenii ATCC BAA-1640] Length = 442 Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 53/88 (60%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ ++G N GKSSL N + ++ +IVTDIPGTTRD + + + + DTAG+R+ Sbjct: 181 RVTLIGKPNVGKSSLINFILGEERSIVTDIPGTTRDSIDSHFIYKDTELTLVDTAGLRKK 240 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 I VE+ + RT +E +++ +LL Sbjct: 241 KKINEAVERYSVIRTLTAIERSNVCILL 268 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 1/93 (1%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273 E+I + I+G N GKS+LFN + + ++I D PG TRD + D +G + D Sbjct: 2 EVIMEKPIVSIIGKPNVGKSTLFNKIVGRKISITEDTPGVTRDRIYSDASWQGRKFLLVD 61 Query: 274 TAGIRETDDIVEKEGIK-RTFLEVENADLILLL 305 T G+ D+ + IK + L +E +D+I+ + Sbjct: 62 TGGLDLKDEDIFMSSIKGQADLALETSDVIIFV 94 >gi|124267181|ref|YP_001021185.1| GTP-binding protein EngA [Methylibium petroleiphilum PM1] gi|166225824|sp|A2SHB1|DER_METPP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|124259956|gb|ABM94950.1| putative GTP-binding protein EngA [Methylibium petroleiphilum PM1] Length = 446 Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ + G N GKS+L N ++ + D+PGTTRD +++ + G ++ DTAG+R Sbjct: 181 RLAVAGRPNVGKSTLINTWLGEERLVAFDLPGTTRDAISVPFERNGQKFELIDTAGLRRK 240 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +EK + +T + +A+++LLL Sbjct: 241 GKVFESIEKFSVVKTLQAIADANVVLLL 268 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 1/90 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET- 280 + ++G N GKS+LFN L K AIV D G TRD D L + DT G T Sbjct: 5 LALVGRPNVGKSTLFNRLTKSRDAIVADFAGLTRDRHYGDGRLGEREFIVVDTGGFEPTA 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310 + + KE K+T V +D+++ + ++ + Sbjct: 65 ESGIYKEMAKQTRQAVAESDVVIFVVDVRA 94 >gi|327403775|ref|YP_004344613.1| GTP-binding protein engA [Fluviicola taffensis DSM 16823] gi|327319283|gb|AEA43775.1| GTP-binding protein engA [Fluviicola taffensis DSM 16823] Length = 436 Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 5/88 (5%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-- 279 I ++G N GKSS+ NA ++ IVTDI GTTRD + G+ + DTAGIR+ Sbjct: 179 IAVVGKPNVGKSSMINAFTGEERNIVTDISGTTRDSIDTRYKAFGFDFMLIDTAGIRKKA 238 Query: 280 --TDDIVEKEGIKRTFLEVENADLILLL 305 T+DI E + R+ +EN+D+ + + Sbjct: 239 KVTEDI-EYYSVLRSVRTIENSDICIFM 265 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 1/88 (1%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-I 277 G I I+G N GKS+LFN L + + AIV +I G TRD + + G + DT G + Sbjct: 2 GNIIAIVGRPNVGKSTLFNRLTESNHAIVKEISGVTRDRIYGRGEWNGIPFSVIDTGGYV 61 Query: 278 RETDDIVEKEGIKRTFLEVENADLILLL 305 R ++DI E E K+ + ++ A++IL + Sbjct: 62 RGSEDIFEGEIRKQVEIAIDEANVILFV 89 >gi|332880705|ref|ZP_08448378.1| hydrogenase maturation GTPase HydF [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332681339|gb|EGJ54263.1| hydrogenase maturation GTPase HydF [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 399 Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 84/164 (51%), Gaps = 23/164 (14%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI-SDTAG 276 N + I + G N+GKSSL N L + VA+V+D+PGTT DV+ +++L G + DTAG Sbjct: 10 NRFHIGLFGRRNSGKSSLVNMLTGQQVAVVSDVPGTTTDVVLKNIELPGVGASVLVDTAG 69 Query: 277 IRETDDIVEKEG--IKRTFLEVENADLILLLKE---INSKKEISFPK-----NIDFIFI- 325 DD E G +++T DL L++ ++KE ++ + +I ++I Sbjct: 70 Y---DDEGELGGLRVRQTVNAARRVDLALIIVSGLPDGAEKEKAWAERFRADDIPVLYIY 126 Query: 326 -------GTKSDLYSTYTEEYDHL-ISSFTGEGLEELINKIKSI 361 G+ +D + + + +S+ TGEG + L++ + + Sbjct: 127 NKVDEDGGSHADAWCMTLGATEVVSVSARTGEGRDRLLSAMAEV 170 >gi|270297048|ref|ZP_06203247.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270273035|gb|EFA18898.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 402 Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 42/120 (35%), Positives = 62/120 (51%), Gaps = 8/120 (6%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDTA 275 N I + G N+GKSSL NAL +D A+V+ PGTT D +T +++ G + I DT Sbjct: 8 NRLHIAVFGRRNSGKSSLVNALTGQDTALVSATPGTTTDPVTKAMEVYPLGPCLFI-DTP 66 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF-----PKNIDFIFIGTKSD 330 G + + + ++RT VE AD+ LLL E + E + + I I I K+D Sbjct: 67 GFDDDEGELGGMRVERTLKTVEKADIALLLYEADGTLEQQWIKLLAAREIPVILILNKAD 126 >gi|255690242|ref|ZP_05413917.1| GTP-binding protein [Bacteroides finegoldii DSM 17565] gi|260624262|gb|EEX47133.1| GTP-binding protein [Bacteroides finegoldii DSM 17565] Length = 396 Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 82/166 (49%), Gaps = 18/166 (10%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276 N I + G N+GKSSL NAL +D A+V+D PGTT D+++ ++++G DT G Sbjct: 10 NRLHIALFGRRNSGKSSLVNALTGQDTALVSDTPGTTTDLVSKAMEMQGIGPCLFIDTPG 69 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL---------KEINS---KKEISFPKNIDFIF 324 + ++ E + RT +E D+ LLL KE+ + +K I ++ I Sbjct: 70 FDDEGELGELR-VSRTLKAIEKTDIALLLCGDTTFSHEKEMLALLKEKNIPVIPVLNKID 128 Query: 325 IGTKSDLYSTYTEE----YDHLISSFTGEGLEELINKIKSILSNKF 366 I SD +TY E+ L+S+ G+E++ I L + F Sbjct: 129 IRENSDSLATYIEKECKIRPLLVSAKEEIGIEQIRQAILEKLPSDF 174 >gi|23099252|ref|NP_692718.1| GTP-binding protein EngA [Oceanobacillus iheyensis HTE831] gi|37999696|sp|Q8EQA8|DER_OCEIH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|22777481|dbj|BAC13753.1| GTP binding protein [Oceanobacillus iheyensis HTE831] Length = 436 Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 33/85 (38%), Positives = 49/85 (57%), Gaps = 3/85 (3%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 ++G N GKSSL NAL +D IV++I GTTRD + L + I DTAG+R+ + Sbjct: 180 LIGRPNVGKSSLVNALLNEDRVIVSEIEGTTRDAIDTKLHRDDQDFVIIDTAGMRKRGKV 239 Query: 284 ---VEKEGIKRTFLEVENADLILLL 305 EK + R +E +D++L+L Sbjct: 240 YESTEKYSVLRALRAIERSDVVLVL 264 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 55/94 (58%), Gaps = 2/94 (2%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN L + ++IV DIPG TRD + + + + I DT GI D Sbjct: 6 VAIVGRPNVGKSTIFNRLVGERISIVEDIPGVTRDRIYANAEWLNHTFNIIDTGGIELGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + + + ++ + ++ AD+I+ L +N K+ I+ Sbjct: 66 EPLLVQMRQQAEIAIDEADVIVFL--LNGKEGIT 97 >gi|225175916|ref|ZP_03729908.1| small GTP-binding protein [Dethiobacter alkaliphilus AHT 1] gi|225168504|gb|EEG77306.1| small GTP-binding protein [Dethiobacter alkaliphilus AHT 1] Length = 419 Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 53/172 (30%), Positives = 91/172 (52%), Gaps = 24/172 (13%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTAGIRE 279 I I G NAGKSSL NAL +D+A+V+ +PGTT D + +++ G +V I DTAG+ + Sbjct: 12 IAIFGKRNAGKSSLINALTNQDIALVSSVPGTTTDPVYKAMEILPLGPVVLI-DTAGLDD 70 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISF---PKNIDFIFIGTKSDL 331 ++ E ++R+ + ADL+LL+ + ++EIS K++ + + K+D+ Sbjct: 71 EGELGELR-VQRSRAVLNKADLVLLVLDGADVPGVFEEEISRLCQKKDVPVVGVLNKADV 129 Query: 332 ----------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373 ++ ++ ++S+ TG G+ +L KI I S K SI Sbjct: 130 NAPDKLTVEAFTRLLQKEPQVVSAATGAGIGQL--KIAMIQSAPEKWDELSI 179 >gi|284048589|ref|YP_003398928.1| small GTP-binding protein [Acidaminococcus fermentans DSM 20731] gi|283952810|gb|ADB47613.1| small GTP-binding protein [Acidaminococcus fermentans DSM 20731] Length = 405 Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 49/171 (28%), Positives = 84/171 (49%), Gaps = 29/171 (16%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAGIRET 280 I + G NAGKSSL NA+ +D+AIV+D GTT D ++ ++ L V ++DT G+ + Sbjct: 16 IGLFGCRNAGKSSLINAITGQDLAIVSDYKGTTTDPVSKAMEILPLGPVLLTDTPGMDDD 75 Query: 281 DDIVEKEGIKRTFLEVENADLIL---------------LLKEINSKKEISFPKNIDFIFI 325 D+ + I++ L + + D+ L LL+EI +K I ++ + Sbjct: 76 TDLGQSR-IEKARLVLRSTDIALLVVDAATGMNDFDRKLLQEIRDRK-------IPYLVV 127 Query: 326 GTKSDLYSTYT-----EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371 K DL ++T +++ L+S+ G + EL +I L + K P Sbjct: 128 FNKCDLVPSFTLPEDLKDHSMLVSAQAGTRIWELKERISQALGKEEVKKPL 178 >gi|255086559|ref|XP_002509246.1| predicted protein [Micromonas sp. RCC299] gi|226524524|gb|ACO70504.1| predicted protein [Micromonas sp. RCC299] Length = 468 Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 41/113 (36%), Positives = 60/113 (53%), Gaps = 16/113 (14%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL---EGYLVKISDTAGI 277 K+ I+G N GKSSL N LA +IV+D GTTRD TID D+ +G + DTAGI Sbjct: 199 KVAIIGRPNVGKSSLLNQLAGDARSIVSDYSGTTRD--TIDSDVIGADGKKYTLIDTAGI 256 Query: 278 RE------TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF 324 R + D E + R + AD+++L+ I++++ P DF+ Sbjct: 257 RRRTSVAASKDAPESLAVGRALQAMRRADVVVLV--IDAEEG---PSQQDFVL 304 >gi|328675592|gb|AEB28267.1| GTP-binding protein EngA [Francisella cf. novicida 3523] Length = 465 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 30/102 (29%), Positives = 62/102 (60%), Gaps = 5/102 (4%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R+G ++G N GKS+L N + +D +V D+PGTT D ++I + G+ I DTAG Sbjct: 181 RHGIHFSLIGRPNVGKSTLTNRMLGEDRVVVFDMPGTTIDSVSIPFERHGHKYTIVDTAG 240 Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 +R+ + +EK + +T ++++++++ + +++++ IS Sbjct: 241 VRKRGKVKQTLEKFSVIKTLQAIQDSNVVVAV--VDARQGIS 280 Score = 43.5 bits (101), Expect = 0.068, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 10/89 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-----VLTIDLDLEGYLVKISDTAG 276 + I+G +N GKS+LFN L A+V D G TRD DLD YLV DT G Sbjct: 5 VAIVGRANVGKSTLFNVLTNSRDALVFDFEGVTRDRQYGQAKYDDLD---YLV--VDTGG 59 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL 305 I + D ++ K++ + ++ A+L+ + Sbjct: 60 ISDKDIGFDEFMAKQSQIAIDEANLVFFV 88 >gi|258513539|ref|YP_003189761.1| small GTP-binding protein [Desulfotomaculum acetoxidans DSM 771] gi|257777244|gb|ACV61138.1| small GTP-binding protein [Desulfotomaculum acetoxidans DSM 771] Length = 408 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 46/150 (30%), Positives = 79/150 (52%), Gaps = 19/150 (12%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDTAGIRE 279 I + G NAGKSSL NAL ++++AIV+++ GTT D + +++ G +V I DTAG+ + Sbjct: 12 IALFGRRNAGKSSLINALTRQNLAIVSNVAGTTTDPVYKSMEILPIGPVVLI-DTAGLDD 70 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISF-----PKNIDFIFIGTKSDL 331 ++ +K + ++ + DL+LL+ ++ K E+ K + I + K DL Sbjct: 71 EGELGQKR-VAKSMAVLAKTDLVLLVADVQKGLGKTELELIETARKKELPVIGVANKIDL 129 Query: 332 YSTYTEEYDHL-------ISSFTGEGLEEL 354 E L +S+ TG+G+ EL Sbjct: 130 LPQPEEISFPLPDMTWVKVSALTGKGINEL 159 >gi|206895297|ref|YP_002247145.1| ribosome-associated GTPase EngA [Coprothermobacter proteolyticus DSM 5265] gi|206737914|gb|ACI16992.1| ribosome-associated GTPase EngA [Coprothermobacter proteolyticus DSM 5265] Length = 425 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 46/62 (74%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 +++ ++G +NAGKS+L N L K+ +V+++PGTT D +T ++++ +V+++DT G+R+ Sbjct: 173 FRVSVIGRTNAGKSTLMNRLLGKERVLVSEMPGTTLDFITETINVKDMVVEVTDTPGLRK 232 Query: 280 TD 281 D Sbjct: 233 GD 234 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 9/119 (7%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + VI+G N GKSSLFN L A+ D PG TRD L+ + G ++ DT G+ Sbjct: 3 RFVIIGAPNVGKSSLFNRLVGGRKALTYDQPGVTRDYLSHICEWRGRYFELVDTGGLYRG 62 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPKNI-----DFIFIGTKSDL 331 + +E KR+ ++AD++L + + + S E +++ + I +G K DL Sbjct: 63 EQDLE-SFWKRSLEIAQDADVVLFVVDASEHLSSVEYDIAQDLRKMGKEVIVVGNKMDL 120 >gi|32473806|ref|NP_866800.1| GTP-binding protein [Rhodopirellula baltica SH 1] gi|32444342|emb|CAD74340.1| probable GTP-binding protein [Rhodopirellula baltica SH 1] Length = 472 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI I+G N GKS+ N LA+ D IV+++ GTTRD + + +++G DT G+R+ Sbjct: 197 KIAIVGRRNVGKSTFVNTLAESDRMIVSEVAGTTRDSVDVRFEIDGQTFLAIDTPGLRKR 256 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 I ++ G R V AD++L+ Sbjct: 257 KSIRTDLDFYGTHRAQRSVRRADVVLMF 284 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 5/93 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA--GIR 278 ++ I+G N GKSSLFN LA++ +AIV + G TRD +T ++ + ++ DT G+ Sbjct: 23 QVAIVGRPNVGKSSLFNWLARRRLAIVDNFEGVTRDRMTTLIESDDQFFELIDTGGMGVE 82 Query: 279 ETDDIVEKEGIKRTF-LEVENADLILLLKEINS 310 + DD+ ++R + + +AD+ILL+ ++ + Sbjct: 83 DADDLTSD--VRRQIDMAIASADVILLVVDVQT 113 >gi|315186271|gb|EFU20032.1| small GTP-binding protein [Spirochaeta thermophila DSM 6578] Length = 411 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 37/90 (41%), Positives = 55/90 (61%), Gaps = 2/90 (2%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRE 279 +IV+ G NAGKSSL NA+ +K+VAIV+D PGTT D +T +L G V +DTAG+ + Sbjct: 11 RIVLFGLRNAGKSSLMNAIFEKEVAIVSDQPGTTTDPVTRAYELIGAGPVAFTDTAGL-D 69 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEIN 309 + + I+R + AD+ LL+ + Sbjct: 70 DEGPLGSLRIERAKKALAQADIALLVTPLT 99 >gi|312871411|ref|ZP_07731506.1| ribosome biogenesis GTPase Der [Lactobacillus iners LEAF 3008A-a] gi|311093064|gb|EFQ51413.1| ribosome biogenesis GTPase Der [Lactobacillus iners LEAF 3008A-a] Length = 435 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 47/185 (25%), Positives = 90/185 (48%), Gaps = 29/185 (15%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 N + I+G N GKSS+ N++ ++ IV ++ GTTRD + + +G I DTAGI Sbjct: 173 NNIRFSIIGRPNVGKSSIVNSILGENRVIVAEMEGTTRDAIDTIFEKDGQKYTIVDTAGI 232 Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLLKE-----INSKKEI---SFPKNIDFIFIG 326 R + VEK + R+ +E +D+ +++ + I K I + I Sbjct: 233 RRKGKVYEKVEKYSVMRSISAIEQSDVAIIVIDASVGIIEQDKHIAGYAHDAGKGVIIAV 292 Query: 327 TKSDLYSTYT-----------EEYDHL-------ISSFTGEGLEELINKIKSILSNKFKK 368 K D+ S T +E+ +L +S+ TG+ +E++++ +K++ N+ ++ Sbjct: 293 NKWDVPSKTTTSMQDFVKVIRQEFQYLDYAPIVFVSAKTGQRIEDIVSLVKNVKENQQRR 352 Query: 369 LPFSI 373 + S+ Sbjct: 353 IQSSV 357 Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 50/87 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS++FN + VAIV D PG TRD + + G + DT GI D Sbjct: 6 VALVGRPNVGKSTIFNRIINSRVAIVEDQPGVTRDRIYANAQWMGKQFVLVDTGGITFED 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI 308 +++E++ + + + AD+I++L ++ Sbjct: 66 NVIEEQIKTQAEIAINEADVIVMLSDV 92 >gi|52841771|ref|YP_095570.1| GTP-binding protein EngA [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|81823403|sp|Q5ZV99|DER_LEGPH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|52628882|gb|AAU27623.1| GTP-binding protein EngA [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 462 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 51/92 (55%), Gaps = 3/92 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI G N GKS+L N + ++ +V D+PGTTRD ++I E + DTAG+R Sbjct: 176 KIAFAGRPNVGKSTLINRILGEERVVVYDMPGTTRDSISIPFTREDKQYVLIDTAGVRRK 235 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEIN 309 D+ +EK + +T ++ A + LLL + N Sbjct: 236 SRIDEKIEKFSVIKTLQAIKEAHVCLLLLDAN 267 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 43/84 (51%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN + K A+V D PG TRD E I DT GI D Sbjct: 5 IALVGRPNVGKSTLFNRITKTQDALVADFPGLTRDRQYGHAQHENKSFIIVDTGGIGVDD 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 V+ +++ + + A++IL L Sbjct: 65 IEVDTLMSRQSQVALNEANVILFL 88 >gi|307610240|emb|CBW99801.1| hypothetical protein LPW_15641 [Legionella pneumophila 130b] Length = 462 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 51/92 (55%), Gaps = 3/92 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI G N GKS+L N + ++ +V D+PGTTRD ++I E + DTAG+R Sbjct: 176 KIAFAGRPNVGKSTLINRILGEERVVVYDMPGTTRDSISIPFTREDKQYVLIDTAGVRRK 235 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEIN 309 D+ +EK + +T ++ A + LLL + N Sbjct: 236 SRIDEKIEKFSVIKTLQAIKEAHVCLLLLDAN 267 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 43/84 (51%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN + K A+V D PG TRD E I DT GI D Sbjct: 5 IALVGRPNVGKSTLFNRITKTQDALVADFPGLTRDRQYGHAQHENKSFIIVDTGGIGVDD 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 V+ +++ + + A++IL L Sbjct: 65 IEVDTLMSRQSQVALNEANVILFL 88 >gi|212696217|ref|ZP_03304345.1| hypothetical protein ANHYDRO_00753 [Anaerococcus hydrogenalis DSM 7454] gi|212676846|gb|EEB36453.1| hypothetical protein ANHYDRO_00753 [Anaerococcus hydrogenalis DSM 7454] Length = 442 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I I+G NAGKSSL N L ++ IVTDI GTTRD + + + DTAG+R Sbjct: 181 RIAIIGKPNAGKSSLVNHLLNEERMIVTDIAGTTRDAIDTYWQYKDNNYVLIDTAGLRRK 240 Query: 281 D---DIVEKEGIKRTFLEVENADLILLL 305 + D +E +RTF V+++++ L L Sbjct: 241 NKVSDNIEYYANQRTFDAVDSSEICLFL 268 Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust. Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 9/89 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G +N GKS+LFN L K AI D G TRD + ++ G ++DT G+ Sbjct: 10 VTLVGRTNVGKSTLFNKLVGKRKAITEDENGVTRDRVYDKVEWTGKEFILADTGGL---- 65 Query: 282 DIVEKEGIKRTFL-EVENA----DLILLL 305 DI KE + + +VE A DLIL + Sbjct: 66 DISNKEIMNQEIKSQVEKALLESDLILFV 94 >gi|114569754|ref|YP_756434.1| small GTP-binding protein [Maricaulis maris MCS10] gi|114340216|gb|ABI65496.1| small GTP-binding protein [Maricaulis maris MCS10] Length = 490 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 38/105 (36%), Positives = 61/105 (58%), Gaps = 6/105 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I ++G N GKS+LFN LA K +AIV D PG TRD L + + DTAG ++ Sbjct: 7 RIAVVGRPNVGKSTLFNRLAGKPLAIVDDRPGVTRDRREARGRLGDLPLLLIDTAGYDDS 66 Query: 281 D-DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF 324 + D ++ E +T + + +ADL LLL I+++ ++ +D +F Sbjct: 67 EKDGLDAEMRTQTEMAIHDADLCLLL--IDARAGVT---PLDVVF 106 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/107 (32%), Positives = 56/107 (52%), Gaps = 11/107 (10%) Query: 210 GKLGEIIRNGYK--------IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261 G + + R G K I ++G NAGKS+L N L ++ I G TRD +++D Sbjct: 167 GPMAKAARRGSKDDGDPPLRIAVIGRPNAGKSTLINTLIGEERLITGPEAGITRDAISVD 226 Query: 262 LDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLL 305 +G V++ DTAG+R + D +E+ T V+ A+++LLL Sbjct: 227 WVWDGRRVRLHDTAGLRKRGKVADRLERMSAADTLRAVKFAEVVLLL 273 >gi|319952374|ref|YP_004163641.1| gtp-binding protein enga [Cellulophaga algicola DSM 14237] gi|319421034|gb|ADV48143.1| GTP-binding protein engA [Cellulophaga algicola DSM 14237] Length = 435 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G NAGKSS NAL ++ IVTD+ GTTRD + + G+ + DTAGIR Sbjct: 176 RFAVVGRPNAGKSSFINALIGEERYIVTDVAGTTRDSIDTKYNRFGFEFNLVDTAGIRRK 235 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E + R+ +E++D+ +++ Sbjct: 236 SKVHEDLEFYSVMRSVRAIEHSDVCIII 263 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 + I+G N GKS+ FN L K+ AIV + G TRD D G + DT G ++ + Sbjct: 5 VAIVGRPNVGKSTFFNRLIKRREAIVDAVSGVTRDRHYGKSDWNGREFSVIDTGGYVKGS 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310 DD+ E E K+ L ++ AD+I+ + ++ + Sbjct: 65 DDVFEAEIDKQVELAIDEADVIIFMVDVET 94 >gi|320108687|ref|YP_004184277.1| ribosome-associated GTPase EngA [Terriglobus saanensis SP1PR4] gi|319927208|gb|ADV84283.1| ribosome-associated GTPase EngA [Terriglobus saanensis SP1PR4] Length = 633 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 37/96 (38%), Positives = 53/96 (55%), Gaps = 3/96 (3%) Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272 GE K+ I+G N GKS+L NAL D +IV+ I GTTRD + ++ G+ + Sbjct: 356 GEYDSKETKVAIIGRPNVGKSTLLNALTGTDRSIVSPIAGTTRDAVDELVERNGHGFRFV 415 Query: 273 DTAGIR---ETDDIVEKEGIKRTFLEVENADLILLL 305 DTAGIR +T + EK + +E AD+ LL+ Sbjct: 416 DTAGIRRKGKTTLMAEKLSVIMARKHLEAADVGLLI 451 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 29/97 (29%), Positives = 55/97 (56%), Gaps = 3/97 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I + G N GKS+LFN L +IV D PG TRD + +++ + +I DT G+ D Sbjct: 165 IAVCGRPNVGKSTLFNRLTGTRRSIVGDEPGITRDRIYGEIEWQSEYARIVDTGGVVPDD 224 Query: 282 D-IVEKEGIKRTFLEVENADLILLLKEINSKKEISFP 317 + ++ E ++ + ++ AD I+++ ++ + E++ P Sbjct: 225 EALIPSEIYRQARVALDEADAIIMV--VDGRTELAAP 259 >gi|262282140|ref|ZP_06059909.1| GTP-binding protein engA [Streptococcus sp. 2_1_36FAA] gi|262262594|gb|EEY81291.1| GTP-binding protein engA [Streptococcus sp. 2_1_36FAA] Length = 436 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 42/153 (27%), Positives = 76/153 (49%), Gaps = 31/153 (20%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRE 279 K ++G N GKSSL NA+ +D I + + GTTRD + T+ D EG + DTAG+R+ Sbjct: 176 KFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTVFTDSEGQEFTMIDTAGMRK 235 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336 + + EK + R ++ +D++L++ +N+++ I Sbjct: 236 SGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEGI---------------------- 271 Query: 337 EEYDHLISSF---TGEGLEELINKIKSILSNKF 366 EYD I+ F G+G+ ++NK ++ + + Sbjct: 272 REYDKRIAGFAHEAGKGIVIVVNKWDTLEKDNY 304 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 45/84 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS+LFN +A + ++IV ++ G TRD + D I DT GI + D Sbjct: 6 IAIVGRPNVGKSTLFNRIAGERISIVENVEGVTRDRIYATADWLNRKFSIIDTGGIDDVD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + + ++ AD I+ + Sbjct: 66 APFMEQIKHQAEIAMDEADAIVFV 89 >gi|218673078|ref|ZP_03522747.1| GTP-binding protein EngA [Rhizobium etli GR56] Length = 393 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 29/63 (46%), Positives = 37/63 (58%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 + + I+G N GKS+LFN L K +A+V D PG TRD D L G I DTAG+ E Sbjct: 3 FTVAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGDARLMGLTFTIIDTAGLEE 62 Query: 280 TDD 282 D+ Sbjct: 63 ADE 65 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 38/66 (57%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G NAGKS+L N +D + G TRD ++++ D G +K+ DTAG+R Sbjct: 204 RVAIVGRPNAGKSTLINRFLGEDRLLTGPEAGITRDSISVEWDWRGRTIKMFDTAGMRRK 263 Query: 281 DDIVEK 286 + EK Sbjct: 264 ARVTEK 269 >gi|54297453|ref|YP_123822.1| GTP-binding protein EngA [Legionella pneumophila str. Paris] gi|148359075|ref|YP_001250282.1| GTP-binding protein EngA [Legionella pneumophila str. Corby] gi|296107123|ref|YP_003618823.1| GTP-binding protein EngA [Legionella pneumophila 2300/99 Alcoy] gi|81822576|sp|Q5X522|DER_LEGPA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|166225822|sp|A5IC36|DER_LEGPC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|53751238|emb|CAH12649.1| hypothetical protein lpp1498 [Legionella pneumophila str. Paris] gi|148280848|gb|ABQ54936.1| GTP-binding protein EngA [Legionella pneumophila str. Corby] gi|295649024|gb|ADG24871.1| GTP-binding protein EngA [Legionella pneumophila 2300/99 Alcoy] Length = 462 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 51/92 (55%), Gaps = 3/92 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI G N GKS+L N + ++ +V D+PGTTRD ++I E + DTAG+R Sbjct: 176 KIAFAGRPNVGKSTLINRILGEERVVVYDMPGTTRDSISIPFTREDKQYVLIDTAGVRRK 235 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEIN 309 D+ +EK + +T ++ A + LLL + N Sbjct: 236 SRIDEKIEKFSVIKTLQAIKEAHVCLLLLDAN 267 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 43/84 (51%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN + K A+V D PG TRD E I DT GI D Sbjct: 5 IALVGRPNVGKSTLFNRITKTQDALVADFPGLTRDRQYGHAQHENKSFIIVDTGGIGVDD 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 V+ +++ + + A++IL L Sbjct: 65 IEVDTLMSRQSQVALNEANVILFL 88 >gi|300741227|ref|ZP_07071248.1| ribosome-associated GTPase EngA [Rothia dentocariosa M567] gi|300380412|gb|EFJ76974.1| ribosome-associated GTPase EngA [Rothia dentocariosa M567] Length = 529 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 27/58 (46%), Positives = 38/58 (65%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 ++ ++G N GKSSL N LA + A+V D+ GTTRD + ++L GY + DTAGIR Sbjct: 252 RVALIGRPNVGKSSLLNKLAGSERAVVNDLAGTTRDPIDEVIELGGYPWRFIDTAGIR 309 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/84 (28%), Positives = 44/84 (52%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++ N + + A+V D PG TRD ++ + G + DT G Sbjct: 78 VAIVGRPNVGKSTIINRILGRREAVVEDKPGVTRDRVSYKAEWVGKRFTLVDTGGWESDA 137 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + + + VE AD+++L+ Sbjct: 138 RGIDAQVADQAEIAVEQADVVILV 161 >gi|325846572|ref|ZP_08169487.1| ribosome biogenesis GTPase Der [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481330|gb|EGC84371.1| ribosome biogenesis GTPase Der [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 438 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I I+G NAGKSSL N L ++ IVTDI GTTRD + + + DTAG+R Sbjct: 177 RIAIIGKPNAGKSSLVNHLLNEERMIVTDIAGTTRDAIDTYWQYKDNNYVLIDTAGLRRK 236 Query: 281 D---DIVEKEGIKRTFLEVENADLILLL 305 + D +E +RTF V+++++ L L Sbjct: 237 NKVSDNIEYYANQRTFDAVDSSEICLFL 264 Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust. Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 9/89 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G +N GKS+LFN L K AI D G TRD + ++ G ++DT G+ Sbjct: 6 VTLVGRTNVGKSTLFNKLVGKRKAITEDENGVTRDRVYDKVEWTGKEFILADTGGL---- 61 Query: 282 DIVEKEGIKRTFL-EVENA----DLILLL 305 DI KE + + +VE A DLIL + Sbjct: 62 DISNKEIMNQEIKSQVEKALLESDLILFV 90 >gi|109899427|ref|YP_662682.1| GTP-binding protein EngA [Pseudoalteromonas atlantica T6c] gi|123170868|sp|Q15R60|DER_PSEA6 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|109701708|gb|ABG41628.1| small GTP-binding protein [Pseudoalteromonas atlantica T6c] Length = 482 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 50/184 (27%), Positives = 95/184 (51%), Gaps = 14/184 (7%) Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270 +L +++ + K+ I+G N GKS+L N + ++ +V D PGTTRD + I ++ + Sbjct: 186 QLEKLLASPIKLAIVGKPNVGKSTLTNRILGEERVVVYDQPGTTRDSIFIPMERDDREYV 245 Query: 271 ISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNIDFIF 324 + DTAG+R I VEK I +T +E A+++LL+ +E + +++S + F+ Sbjct: 246 LIDTAGVRRRRSISEAVEKFSIVKTLQAIEEANVVLLVIDAQEGVTDQDLSL---LGFVL 302 Query: 325 IGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384 +S + + ++D L E EL ++ I F +L + H ++ HL Sbjct: 303 NSGRSLVVA--VNKWDGLAKDVKDEIKRELDRRLGFI---DFARLHYISALHGTNVGHLF 357 Query: 385 QTVR 388 ++V+ Sbjct: 358 ESVQ 361 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 45/84 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD + EG + DT GI + Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQANYEGLQFIVVDTGGISGDE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ ++ + ++ AD++L L Sbjct: 65 QGIDMAMANQSLMAIDEADVVLFL 88 >gi|256545124|ref|ZP_05472490.1| ribosome-associated GTPase EngA [Anaerococcus vaginalis ATCC 51170] gi|256399165|gb|EEU12776.1| ribosome-associated GTPase EngA [Anaerococcus vaginalis ATCC 51170] Length = 442 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I I+G NAGKSSL N L ++ IVTDI GTTRD + + + DTAG+R Sbjct: 181 RIAIIGKPNAGKSSLVNHLLNEERMIVTDIAGTTRDAIDTYWQYKDNNYVLIDTAGLRRK 240 Query: 281 D---DIVEKEGIKRTFLEVENADLILLL 305 + D +E +RTF V+++++ L L Sbjct: 241 NKVSDNIEYYANQRTFDAVDSSEICLFL 268 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 56/174 (32%), Positives = 83/174 (47%), Gaps = 32/174 (18%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273 E I N + ++G +N GKS+LFN L K AI D+ G TRD + ++ G+ ++D Sbjct: 2 ENIMNAPIVTLVGRTNVGKSTLFNKLVGKRKAITEDVNGVTRDRVYDKVEWIGHEFILAD 61 Query: 274 TAGIRETDDIVEKEGIKRTFL-EVENA----DLILLLKE----IN-------------SK 311 T G+ DI KE + + +VE A DLIL + + IN +K Sbjct: 62 TGGL----DISNKELMNQEIKSQVEKALLESDLILFVVDGREGINPHDYEIADEIRKYNK 117 Query: 312 KEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEG---LEELINKIKSIL 362 K I ID I +Y Y +D LIS+ + EG L +L++KI S + Sbjct: 118 KVIVVANKIDGANI--PDHIYDFYQFGFDDLIST-SAEGSKNLGDLLDKIVSFI 168 >gi|325107065|ref|YP_004268133.1| ribosome-associated GTPase EngA [Planctomyces brasiliensis DSM 5305] gi|324967333|gb|ADY58111.1| ribosome-associated GTPase EngA [Planctomyces brasiliensis DSM 5305] Length = 450 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI I+G N GKSS NALA+ + IV++I GTTRD + + +L+ DT G+R+ Sbjct: 185 KIAIVGRRNVGKSSFINALAQTERMIVSEIAGTTRDSVDVRFELDDKAFVAIDTPGVRKK 244 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E G+ R + A+L+L+ Sbjct: 245 KSLANDIEFYGLVRAQKSIRRANLVLMF 272 Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 27/39 (69%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259 K+VI+G N GKSS+FN +A + +++V G TRD +T Sbjct: 5 KVVIVGRPNVGKSSIFNWIAGRMISVVDPTAGVTRDRIT 43 >gi|54294416|ref|YP_126831.1| GTP-binding protein EngA [Legionella pneumophila str. Lens] gi|81822385|sp|Q5WWG8|DER_LEGPL RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|53754248|emb|CAH15725.1| hypothetical protein lpl1485 [Legionella pneumophila str. Lens] Length = 462 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 51/92 (55%), Gaps = 3/92 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI G N GKS+L N + ++ +V D+PGTTRD ++I E + DTAG+R Sbjct: 176 KIAFAGRPNVGKSTLINRILGEERVVVYDMPGTTRDSISIPFTREDKQYVLIDTAGVRRK 235 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEIN 309 D+ +EK + +T ++ A + LLL + N Sbjct: 236 SRIDEKIEKFSVIKTLQAIKEAHVCLLLLDAN 267 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 43/84 (51%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN + K A+V D PG TRD E I DT GI D Sbjct: 5 IALVGRPNVGKSTLFNRITKTQDALVADFPGLTRDRQYGHAQHENKSFIIVDTGGIGVDD 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 V+ K++ + + A++IL L Sbjct: 65 IEVDTLMSKQSQVALNEANVILFL 88 >gi|313893405|ref|ZP_07826977.1| ribosome biogenesis GTPase Der [Veillonella sp. oral taxon 158 str. F0412] gi|313442046|gb|EFR60466.1| ribosome biogenesis GTPase Der [Veillonella sp. oral taxon 158 str. F0412] Length = 444 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 3/87 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--- 278 + ++G N GKS+LFNA+ K ++IV DIPG TRD + D + + DT GI Sbjct: 6 VAVVGRPNVGKSTLFNAIVNKRISIVEDIPGVTRDRIYFDAEWLNREFTMIDTGGIEFIT 65 Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL 305 E ++ K + L +E AD+IL + Sbjct: 66 ENSHVIPKMMRLQAELAIEEADVILFV 92 Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 33/87 (37%), Positives = 51/87 (58%), Gaps = 3/87 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--- 278 + I+G N GKSSL NAL +D IV+D+ GTTRD + + DTAG+R Sbjct: 181 VAIIGRPNVGKSSLTNALLGQDRVIVSDVAGTTRDSIDTYWTHGDQKFVLIDTAGMRRKS 240 Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL 305 + D+ VE+ I R+ V+ +D+++L+ Sbjct: 241 KIDEAVERYSIVRSLRSVDRSDIVVLV 267 >gi|262371654|ref|ZP_06064933.1| ribosome-associated GTPase EngA [Acinetobacter junii SH205] gi|262311679|gb|EEY92764.1| ribosome-associated GTPase EngA [Acinetobacter junii SH205] Length = 469 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 50/84 (59%), Gaps = 3/84 (3%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G ++ I+G N GKS+L N L ++ + D PGTTRD + I + +G + DTAG+R Sbjct: 176 GLRLAIIGRPNVGKSTLVNRLLGEERVVAFDQPGTTRDSIYIPFERDGRQYTLIDTAGVR 235 Query: 279 ---ETDDIVEKEGIKRTFLEVENA 299 + D+++EK I +T +++A Sbjct: 236 RKGKVDEMIEKFSIVKTLQAMKDA 259 Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust. Identities = 17/35 (48%), Positives = 22/35 (62%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 I ++G N GKS+LFN + K A+V D G TRD Sbjct: 5 IALIGRPNVGKSTLFNQITKSRDALVADFAGLTRD 39 >gi|56751772|ref|YP_172473.1| GTP-binding protein EngA [Synechococcus elongatus PCC 6301] gi|81301149|ref|YP_401357.1| GTP-binding protein EngA [Synechococcus elongatus PCC 7942] gi|81820595|sp|Q5N167|DER_SYNP6 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|123556312|sp|Q31KP9|DER_SYNE7 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|56686731|dbj|BAD79953.1| GTP-binding protein engA [Synechococcus elongatus PCC 6301] gi|81170030|gb|ABB58370.1| Small GTP-binding protein domain [Synechococcus elongatus PCC 7942] Length = 453 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 33/90 (36%), Positives = 50/90 (55%), Gaps = 3/90 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKSSL N+ + AIV+ I GTTRD + ++ ++ DTAGIR Sbjct: 180 VAIVGRPNVGKSSLLNSFLGEQRAIVSPIAGTTRDAIDTVIERNDQRYRLVDTAGIRRKR 239 Query: 282 DI---VEKEGIKRTFLEVENADLILLLKEI 308 + E GI R+F + AD+ LL+ ++ Sbjct: 240 GVDYGPEFFGINRSFKAIRRADVCLLVIDV 269 Score = 40.8 bits (94), Expect = 0.45, Method: Compositional matrix adjust. Identities = 20/35 (57%), Positives = 22/35 (62%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 + ILG N GKS+L N LA AIV D PG TRD Sbjct: 6 VAILGRPNVGKSTLVNRLAGSREAIVHDEPGVTRD 40 >gi|170750287|ref|YP_001756547.1| small GTP-binding protein [Methylobacterium radiotolerans JCM 2831] gi|170656809|gb|ACB25864.1| small GTP-binding protein [Methylobacterium radiotolerans JCM 2831] Length = 448 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G NAGKS+L N + +D +V G TRD +++D + G +K+ DTAG+R Sbjct: 183 KVAIVGRPNAGKSTLINRMLGEDRLLVGPEAGITRDSISLDWEWRGRRIKLHDTAGMRRR 242 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLL 305 DD +EK + V A+++++L Sbjct: 243 ARIDDKLEKLAVSDGLRAVRFAEVVVVL 270 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/60 (45%), Positives = 36/60 (60%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN L K +A+V D PG TRD D+ G ++ DTAG+ E D Sbjct: 6 VAIVGRPNVGKSTLFNRLVGKKLALVDDRPGVTRDRREGDVAFGGLEFRVIDTAGLEEAD 65 >gi|325846671|ref|ZP_08169586.1| hydrogenase maturation GTPase HydF [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481429|gb|EGC84470.1| hydrogenase maturation GTPase HydF [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 380 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 42/114 (36%), Positives = 67/114 (58%), Gaps = 5/114 (4%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280 + +LG +N+GKSS N ++ +DV+IV++ GTT D + +++ + V DTAG + Sbjct: 11 LALLGKTNSGKSSFLNFISDQDVSIVSNQKGTTTDPIKKSMEIHDFGPVLFFDTAGFDDD 70 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK-KEISF--PKNIDFIFIGTKSDL 331 ++ EK I++T +E AD++L I+ K +EIS K IFI TK DL Sbjct: 71 TNLYEKR-IEKTKKAIEKADILLYFLSIDDKIEEISVLKEKYDKIIFIATKQDL 123 >gi|307307991|ref|ZP_07587709.1| ribosome-associated GTPase EngA [Sinorhizobium meliloti BL225C] gi|307319941|ref|ZP_07599364.1| ribosome-associated GTPase EngA [Sinorhizobium meliloti AK83] gi|306894481|gb|EFN25244.1| ribosome-associated GTPase EngA [Sinorhizobium meliloti AK83] gi|306901395|gb|EFN31999.1| ribosome-associated GTPase EngA [Sinorhizobium meliloti BL225C] Length = 476 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 1/87 (1%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 + + I+G N GKS+LFN L K +A+V D PG TRD D L +I DTAG+ E Sbjct: 3 FTVAIIGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGDAKLVDLKFRIIDTAGLEE 62 Query: 280 TD-DIVEKEGIKRTFLEVENADLILLL 305 + D ++ +T ++ ADL L + Sbjct: 63 SSPDSLQGRMWAQTEAAIDEADLSLFV 89 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 6/98 (6%) Query: 195 DILFLKNDISSHISQGKLGEIIRNGY------KIVILGHSNAGKSSLFNALAKKDVAIVT 248 D+ DI +G E + Y ++ I+G NAGKS+L N +D + Sbjct: 174 DVAETNVDIRPAAGEGTEDEEVEPAYDETKPLRVAIVGRPNAGKSTLINRFLGEDRLLTG 233 Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEK 286 G TRD ++++ D G +K+ DTAG+R + EK Sbjct: 234 PEAGITRDSISVEWDWRGRTIKMFDTAGMRRKAKVQEK 271 >gi|159479670|ref|XP_001697913.1| hypothetical protein CHLREDRAFT_120661 [Chlamydomonas reinhardtii] gi|158274011|gb|EDO99796.1| predicted protein [Chlamydomonas reinhardtii] Length = 446 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 34/91 (37%), Positives = 52/91 (57%), Gaps = 7/91 (7%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIR-- 278 + I+G N GKSSL NA+A ++ +IV D+ GTTRD + + L G + + DTAGIR Sbjct: 179 VAIVGRPNVGKSSLLNAIAGEERSIVCDMSGTTRDAVDTKVTLPTGKKLTLIDTAGIRKR 238 Query: 279 ----ETDDIVEKEGIKRTFLEVENADLILLL 305 ++ D E+ + R V AD+ +L+ Sbjct: 239 SRVADSPDGAEQISVDRAMRAVRRADVAVLV 269 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 45/163 (27%), Positives = 71/163 (43%), Gaps = 24/163 (14%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN +A VA+V D PG TRD L + DT G+ Sbjct: 1 VAIVGRPNVGKSALFNRIAGASVAVVFDQPGVTRDRLYTRAFWGDKEFVMIDTGGLMSDA 60 Query: 282 DIVEKEGIKRTFLE-VENADLILLL-----------KEINSKKEISFPKNIDFIFIG--- 326 + + I+R V AD ++LL +EI S + P + + Sbjct: 61 TRLPPDAIERQAAAGVAEADTVILLVDGQAGLQPGDEEILSWLRSNHPSKSLLLAVNKCE 120 Query: 327 --TKSD-----LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362 K+D +ST E H +S+ +G G E+++ + +L Sbjct: 121 NVAKADQMVAEFWSTGLEP--HAVSAISGTGTGEMLDVLAKML 161 >gi|307719473|ref|YP_003875005.1| hypothetical protein STHERM_c17970 [Spirochaeta thermophila DSM 6192] gi|306533198|gb|ADN02732.1| hypothetical protein STHERM_c17970 [Spirochaeta thermophila DSM 6192] Length = 423 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 37/90 (41%), Positives = 54/90 (60%), Gaps = 2/90 (2%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRE 279 +IV+ G NAGKSSL NA+ +K+VAIV+D PGTT D +T +L G V +DTAG+ + Sbjct: 23 RIVLFGLRNAGKSSLMNAIFEKEVAIVSDQPGTTTDPVTRAYELIGAGPVAFTDTAGLDD 82 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEIN 309 + I+R + AD+ LL+ + Sbjct: 83 EGPLGSIR-IERAKKALAQADIALLVTPLT 111 >gi|126653372|ref|ZP_01725476.1| GTP-binding protein EngA [Bacillus sp. B14905] gi|126589888|gb|EAZ84019.1| GTP-binding protein EngA [Bacillus sp. B14905] Length = 436 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K ++G N GKSSL NA +D IV+DI GTTRD + + I DTAG+R+ Sbjct: 177 KFSLIGRPNVGKSSLVNAFLGQDRVIVSDIAGTTRDAIDTPYAYDDQEYVIIDTAGMRKK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 I EK + R +E +D++L++ Sbjct: 237 GKIYETTEKYSVLRALRAIERSDVVLVV 264 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN + + V+IV DIPG TRD + + + I DT GI D Sbjct: 6 VAIVGRPNVGKSTIFNRIVGERVSIVEDIPGVTRDRIYSSAEWLTHDFNIIDTGGIEIGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + ++ ++ + +E AD+I+ + Sbjct: 66 EPFLEQIRQQAEIAIEEADVIIFM 89 >gi|41017011|sp|Q7URJ8|DER_RHOBA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|327537179|gb|EGF23928.1| small GTP-binding protein [Rhodopirellula baltica WH47] Length = 454 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI I+G N GKS+ N LA+ D IV+++ GTTRD + + +++G DT G+R+ Sbjct: 179 KIAIVGRRNVGKSTFVNTLAESDRMIVSEVAGTTRDSVDVRFEIDGQTFLAIDTPGLRKR 238 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 I ++ G R V AD++L+ Sbjct: 239 KSIRTDLDFYGTHRAQRSVRRADVVLMF 266 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 5/93 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA--GIR 278 ++ I+G N GKSSLFN LA++ +AIV + G TRD +T ++ + ++ DT G+ Sbjct: 5 QVAIVGRPNVGKSSLFNWLARRRLAIVDNFEGVTRDRMTTLIESDDQFFELIDTGGMGVE 64 Query: 279 ETDDIVEKEGIKRTF-LEVENADLILLLKEINS 310 + DD+ ++R + + +AD+ILL+ ++ + Sbjct: 65 DADDLTSD--VRRQIDMAIASADVILLVVDVQT 95 >gi|251771600|gb|EES52176.1| GTP-binding protein (EngA) [Leptospirillum ferrodiazotrophum] Length = 468 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 34/85 (40%), Positives = 46/85 (54%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ILG N GKS+LFN L ++ AI D+PG TRD + Y ++ DT GI D Sbjct: 14 VAILGRPNVGKSTLFNRLLGENRAITMDMPGVTRDRHYATVTQGPYAYRLVDTGGILFGD 73 Query: 282 DIVEKEGI-KRTFLEVENADLILLL 305 D E I K+ +E ADL++ L Sbjct: 74 DHPLGEAIRKQALFALEEADLLIYL 98 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I ++G N GKS+L N L ++ + + +PGTTRD + + +G + DTAGIR+ Sbjct: 209 RIAVIGRPNVGKSTLINHLLGEERLVTSPLPGTTRDAIDTLVTWKGRPYRFVDTAGIRKR 268 Query: 281 DDIVEKE---GIKRTFLEVENADLILLL 305 I E GI RT + A++ ++L Sbjct: 269 GKIAEASEMYGIIRTERTLIQAEIAVVL 296 >gi|220904745|ref|YP_002480057.1| GTP-binding protein EngA [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869044|gb|ACL49379.1| small GTP-binding protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 454 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 34/89 (38%), Positives = 48/89 (53%), Gaps = 3/89 (3%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 ++ +LG NAGKSSL NAL+ ++ IV+D+ GTTRD + + G DTAG+R Sbjct: 190 ALRLAMLGRPNAGKSSLINALSGEERMIVSDVAGTTRDSVDVRFCRNGKDYVFVDTAGVR 249 Query: 279 ---ETDDIVEKEGIKRTFLEVENADLILL 304 + D VEK + AD+ LL Sbjct: 250 RRTKITDSVEKYSVNSAIKSSTKADVTLL 278 Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 1/58 (1%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV-KISDTAGI 277 +I+++G N GKS+LFN L + + AI D PG TRD + + +G I DT GI Sbjct: 7 RIILVGRPNVGKSTLFNRLIRSNRAITHDRPGVTRDRMEGVVRRKGLPAFGIVDTGGI 64 >gi|187250683|ref|YP_001875165.1| small GTP-binding protein [Elusimicrobium minutum Pei191] gi|186970843|gb|ACC97828.1| Small GTP-binding protein [Elusimicrobium minutum Pei191] Length = 377 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 50/150 (33%), Positives = 75/150 (50%), Gaps = 10/150 (6%) Query: 229 NAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKE 287 N GKSSLFNALA + AIV PGTT D + + +++EG V + DT GI + + + Sbjct: 2 NVGKSSLFNALAGRAQAIVDSTPGTTTDPVRLIIEIEGLGPVVLLDTGGIDDKSTKLGER 61 Query: 288 GIKRTFLEVENADLILLLKEINS--KKEISF-----PKNIDFIFIGTKSDLYSTYTEEYD 340 + ++ V DL LL+ N+ E F K I I I KSDL + D Sbjct: 62 RVLKSVNAVNQIDLALLVFTDNNFGPYEQDFLETIKAKKIPVILIHNKSDLTPLKLKIED 121 Query: 341 HLISSFTGE--GLEELINKIKSILSNKFKK 368 H I F+ + ++ +K++L+ + KK Sbjct: 122 HEIIDFSAKNNNTAPILEAVKTVLNKQNKK 151 >gi|320353154|ref|YP_004194493.1| ribosome-associated GTPase EngA [Desulfobulbus propionicus DSM 2032] gi|320121656|gb|ADW17202.1| ribosome-associated GTPase EngA [Desulfobulbus propionicus DSM 2032] Length = 445 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 45/88 (51%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 N + ++G N GKS+LFN + K+ A+V PG TRD + E + + DT GI Sbjct: 5 NATLVALIGRPNVGKSTLFNRMVKRRDALVDPTPGVTRDRHYARVSWEEHPFILVDTGGI 64 Query: 278 RETDDIVEKEGIKRTFLEVENADLILLL 305 + DD + + L +E AD+I L Sbjct: 65 DDEDDTITNHIRHQALLAIEEADVIFFL 92 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 3/95 (3%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273 E+ N +I LG N GKSS+ NA+ ++ +V+DI GTTRD + + + Y + D Sbjct: 175 ELPDNTMRIAFLGRPNVGKSSMVNAIIGQERMVVSDIAGTTRDSVDTLVTRDPYTYLLID 234 Query: 274 TAGIR---ETDDIVEKEGIKRTFLEVENADLILLL 305 TAGIR +T D +EK + + + D+ L+L Sbjct: 235 TAGIRRKGKTTDKLEKFSVLKALKALGRCDIALVL 269 >gi|302797579|ref|XP_002980550.1| hypothetical protein SELMODRAFT_112935 [Selaginella moellendorffii] gi|300151556|gb|EFJ18201.1| hypothetical protein SELMODRAFT_112935 [Selaginella moellendorffii] Length = 471 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 49/175 (28%), Positives = 85/175 (48%), Gaps = 27/175 (15%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGT--TRDVLTIDLDLEGYLVKISDTAGIRE 279 ++ILG N GKSSL+N L + AIV D P + TRD+ L K+ D+AG+ Sbjct: 4 VIILGRPNVGKSSLYNRLVHRKEAIVYDTPDSHVTRDIREGSAKLSDLRFKVFDSAGLET 63 Query: 280 TDD----IVEKEGIKRTFLEVENADLILL-----LKEINSKKEISFPK---NIDFIFIGT 327 +++ + G+ TFL +A L L+ + ++ + + F K N+ + + Sbjct: 64 SEEGATVLARTTGLTATFLRTCHAALFLIDGRAGVSPLDKEAVMWFRKLNLNLPVVLVVN 123 Query: 328 KSD-------LYSTYTEEY-----DHL-ISSFTGEGLEELINKIKSILSNKFKKL 369 K++ + + E Y D + +S+ TGEGL +L +++ IL +KL Sbjct: 124 KAEKITGDHQIMANIAESYSLGLGDPVPVSAETGEGLADLFQRLQPILDAAKEKL 178 Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 35/56 (62%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 ++ I G +N GKS++ N+L +K+ + PG TRD +TID + V++ DTAG Sbjct: 196 RLAIAGRTNVGKSTVINSLLRKERVLTGPEPGLTRDAITIDFEFNKKPVRLVDTAG 251 >gi|295426288|ref|ZP_06818948.1| ribosome-associated GTPase EngA [Lactobacillus amylolyticus DSM 11664] gi|295064027|gb|EFG54975.1| ribosome-associated GTPase EngA [Lactobacillus amylolyticus DSM 11664] Length = 436 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 49/84 (58%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN + K+ +AIV D PG TRD + G+ + DT GI D Sbjct: 6 VAIVGRPNVGKSTLFNRIIKERLAIVEDEPGVTRDRNYAQAEWMGHNFDLIDTGGITWED 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 +E+E + + ++ AD+I++L Sbjct: 66 GKIEEEIRAQAEIAIDEADVIVML 89 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 4/86 (4%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRETDD 282 ++G N GKSS+ N L + IV + GTTRD + T + +G ++ DTAGIR Sbjct: 179 VIGRPNVGKSSIVNKLLGEKRVIVANQEGTTRDAIDTPFIGKDGTKFRLIDTAGIRRRGK 238 Query: 283 I---VEKEGIKRTFLEVENADLILLL 305 + EK + R ++ +D+ LL+ Sbjct: 239 VYEKTEKYSVMRALSAIDRSDVALLV 264 >gi|237751648|ref|ZP_04582128.1| GTP-binding protein [Helicobacter bilis ATCC 43879] gi|229373014|gb|EEO23405.1| GTP-binding protein [Helicobacter bilis ATCC 43879] Length = 489 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 2/90 (2%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 N I I+G N GKSSL NAL + ++V++I GTT D + + GY + DTAGI Sbjct: 209 NTISIGIIGRPNVGKSSLLNALTNTNRSLVSNIAGTTIDPVDEHIMYNGYNLTFVDTAGI 268 Query: 278 RETDDI--VEKEGIKRTFLEVENADLILLL 305 R I +EK + RT ++ D+ LL+ Sbjct: 269 RRRSKIEGIEKYALDRTQKMLQECDIALLV 298 >gi|227510314|ref|ZP_03940363.1| GTP-binding protein EngA [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227189966|gb|EEI70033.1| GTP-binding protein EngA [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 435 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 33/105 (31%), Positives = 58/105 (55%), Gaps = 5/105 (4%) Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272 G + + + I+G N GKSSL NA+ ++ IV+D+ GTTRD + + + + Sbjct: 168 GNVPNDDIRFSIIGRPNVGKSSLVNAILGENRVIVSDVAGTTRDAIDTRFEADNIKFTMV 227 Query: 273 DTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEI 314 DTAGIR+ + E+ + R ++ +D+IL + IN+++ I Sbjct: 228 DTAGIRKRGKVYENTERYSVMRAMKAIDQSDVILFV--INAEEGI 270 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 44/84 (52%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + +G N GKS++FN +A ++IV D PG TRD + + + DT GI+ +D Sbjct: 6 VAFIGRPNVGKSTIFNRIAGDRISIVEDTPGVTRDRIYTHAEWLANEFAMIDTGGIQISD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + + +E AD+I+ + Sbjct: 66 APFNTQIKNQAEIAIEEADVIVFI 89 >gi|90418692|ref|ZP_01226603.1| GTP-binding protein [Aurantimonas manganoxydans SI85-9A1] gi|90336772|gb|EAS50477.1| GTP-binding protein [Aurantimonas manganoxydans SI85-9A1] Length = 469 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 39/105 (37%), Positives = 56/105 (53%), Gaps = 4/105 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS+LFN L K +A+V D PG TRD T D L ++ DTAG+ E Sbjct: 4 IAIIGRPNVGKSTLFNRLVGKRLALVDDRPGVTRDRRTGDATLLDLDFEVVDTAGLEEAG 63 Query: 282 -DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFI 325 D +E +T + +ADL L + ++ K P++ F+ I Sbjct: 64 ADTLEGRMRTQTETAIASADLCLFMIDV---KAGVMPQDRAFVEI 105 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 35/170 (20%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I I+G NAGKS+L N +D + G TRD + + + G +K+ DTAG+R Sbjct: 199 RIAIVGRPNAGKSTLINRFLGEDRMLTGPEAGITRDSIASEWEWRGRTIKVFDTAGMRRK 258 Query: 281 DDIVEK-------EGIKR-TFLEV-------------ENADLILLLKEINSKKEISFPKN 319 + EK +G++ F EV ++ ++ L+ I+F K Sbjct: 259 AKVQEKLEKLSVADGLRAIKFAEVVVVVFDATIPFERQDMSIVDLVMREGRAPVIAFNK- 317 Query: 320 IDFIFIGTKSDLYSTYTEEYDHL-----------ISSFTGEGLEELINKI 358 + I + ++ + E+ D L +S TGEG+E L+ I Sbjct: 318 --WDLIEDRQEVLADLREKTDRLLPQARGIRAITVSGETGEGVERLMKAI 365 >gi|302790107|ref|XP_002976821.1| hypothetical protein SELMODRAFT_105942 [Selaginella moellendorffii] gi|300155299|gb|EFJ21931.1| hypothetical protein SELMODRAFT_105942 [Selaginella moellendorffii] Length = 471 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 49/175 (28%), Positives = 85/175 (48%), Gaps = 27/175 (15%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGT--TRDVLTIDLDLEGYLVKISDTAGIRE 279 ++ILG N GKSSL+N L + AIV D P + TRD+ L K+ D+AG+ Sbjct: 4 VIILGRPNVGKSSLYNRLVHRKEAIVYDTPDSHVTRDIREGSAKLSDLRFKVFDSAGLET 63 Query: 280 TDD----IVEKEGIKRTFLEVENADLILL-----LKEINSKKEISFPK---NIDFIFIGT 327 +++ + G+ TFL +A L L+ + ++ + + F K N+ + + Sbjct: 64 SEEGETVLARTTGLTATFLRTCHAALFLIDGRAGVSPLDKEAVMWFRKLNLNLPVVLVVN 123 Query: 328 KSD-------LYSTYTEEY-----DHL-ISSFTGEGLEELINKIKSILSNKFKKL 369 K++ + + E Y D + +S+ TGEGL +L +++ IL +KL Sbjct: 124 KAEKITGDHQIMANIAESYSLGLGDPVPVSAETGEGLADLFQRLQPILDAAKEKL 178 Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 35/56 (62%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 ++ I G +N GKS++ N+L +K+ + PG TRD +TID + V++ DTAG Sbjct: 196 RLAIAGRTNVGKSTVINSLLRKERVLTGPEPGLTRDAITIDFEFNKKPVRLVDTAG 251 >gi|290579757|ref|YP_003484149.1| phosphoglycerate dehydrogenase [Streptococcus mutans NN2025] gi|254996656|dbj|BAH87257.1| phosphoglycerate dehydrogenase [Streptococcus mutans NN2025] Length = 436 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 73/148 (49%), Gaps = 31/148 (20%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRE 279 K ++G N GKSSL NA+ +D I + + GTTRD + T D EG + DTAG+R+ Sbjct: 176 KFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTTFTDEEGQEFTMIDTAGMRK 235 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336 + + EK + R ++ +D++L++ +N+++ I Sbjct: 236 SGKVYENTEKYSVMRAMRAIDRSDIVLMV--LNAEEGI---------------------- 271 Query: 337 EEYDHLISSF---TGEGLEELINKIKSI 361 EYD I+ F G+G+ ++NK +I Sbjct: 272 REYDKRIAGFAHEAGKGIVVVVNKWDAI 299 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 45/84 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN +A + ++IV D+ G TRD + + I DT GI + D Sbjct: 6 VAIVGRPNVGKSALFNRIAGERISIVEDVEGVTRDRIYTKAEWLNRQFSIIDTGGIDDVD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + + + AD+I+ + Sbjct: 66 APFMEQIKHQADIAMTEADVIVFV 89 >gi|6681650|dbj|BAA88823.1| phosphoglycerate dehydrogenase [Streptococcus mutans] Length = 436 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 73/148 (49%), Gaps = 31/148 (20%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRE 279 K ++G N GKSSL NA+ +D I + + GTTRD + T D EG + DTAG+R+ Sbjct: 176 KFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTTFTDEEGQEFTMIDTAGMRK 235 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336 + + EK + R ++ +D++L++ +N+++ I Sbjct: 236 SGKVYENTEKYSVMRAMRAIDRSDIVLMV--LNAEEGI---------------------- 271 Query: 337 EEYDHLISSF---TGEGLEELINKIKSI 361 EYD I+ F G+G+ ++NK +I Sbjct: 272 REYDKRIAGFAHEAGKGIVVVVNKWDAI 299 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 45/84 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN +A + ++IV D+ G TRD + + I DT GI + D Sbjct: 6 VAIVGRPNVGKSALFNRIAGERISIVEDVEGVTRDRIYTKAEWLNRQFSIIDTGGIDDVD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + + + AD+I+ + Sbjct: 66 APFMEQIKHQADIAMTEADVIVFV 89 >gi|227513321|ref|ZP_03943370.1| GTP-binding protein EngA [Lactobacillus buchneri ATCC 11577] gi|227083194|gb|EEI18506.1| GTP-binding protein EngA [Lactobacillus buchneri ATCC 11577] Length = 435 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 33/105 (31%), Positives = 58/105 (55%), Gaps = 5/105 (4%) Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272 G + + + I+G N GKSSL NA+ ++ IV+D+ GTTRD + + + + Sbjct: 168 GNVPNDDIRFSIIGRPNVGKSSLVNAILGENRVIVSDVAGTTRDAIDTRFEADNIKFTMV 227 Query: 273 DTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEI 314 DTAGIR+ + E+ + R ++ +D+IL + IN+++ I Sbjct: 228 DTAGIRKRGKVYENTERYSVMRAMKAIDQSDVILFV--INAEEGI 270 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 44/84 (52%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + +G N GKS++FN +A ++IV D PG TRD + + + DT GI+ +D Sbjct: 6 VAFIGRPNVGKSTIFNRIAGDRISIVEDTPGVTRDRIYTHAEWLANEFAMIDTGGIQISD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + + +E AD+I+ + Sbjct: 66 APFNTQIKNQAEIAIEEADVIVFI 89 >gi|317478951|ref|ZP_07938098.1| small GTP-binding domain-containing protein [Bacteroides sp. 4_1_36] gi|316904928|gb|EFV26735.1| small GTP-binding domain-containing protein [Bacteroides sp. 4_1_36] Length = 396 Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 42/120 (35%), Positives = 62/120 (51%), Gaps = 8/120 (6%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDTA 275 N I + G N+GKSSL NAL +D A+V+ PGTT D +T +++ G + I DT Sbjct: 8 NRLHIAVFGRRNSGKSSLVNALTGQDTALVSATPGTTTDPVTKAMEVYPLGPCLFI-DTP 66 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF-----PKNIDFIFIGTKSD 330 G + + + ++RT VE AD+ LLL E + E + + I I I K+D Sbjct: 67 GFDDDEGELGGMRVERTLKTVEKADIALLLYEADGTLEQQWLKLLAAREIPVILILNKAD 126 >gi|16264869|ref|NP_437661.1| GTP-binding protein EngA [Sinorhizobium meliloti 1021] gi|26006728|sp|Q92UK6|DER_RHIME RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|15141008|emb|CAC49521.1| putative GTP-binding protein [Sinorhizobium meliloti 1021] Length = 476 Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 1/87 (1%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 + + I+G N GKS+LFN L K +A+V D PG TRD D L +I DTAG+ E Sbjct: 3 FTVAIIGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGDAKLVDLKFRIIDTAGLEE 62 Query: 280 TD-DIVEKEGIKRTFLEVENADLILLL 305 + D ++ +T ++ ADL L + Sbjct: 63 SSPDSLQGRMWAQTEAAIDEADLSLFV 89 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 6/98 (6%) Query: 195 DILFLKNDISSHISQGKLGEIIRNGY------KIVILGHSNAGKSSLFNALAKKDVAIVT 248 D+ DI +G E + Y ++ I+G NAGKS+L N +D + Sbjct: 174 DVAETNVDIRPVAGEGTEDEEVEPAYDETKPLRVAIVGRPNAGKSTLINRFLGEDRLLTG 233 Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEK 286 G TRD ++++ D G +K+ DTAG+R + EK Sbjct: 234 PEAGITRDSISVEWDWRGRTIKMFDTAGMRRKAKVQEK 271 >gi|317060485|ref|ZP_07924970.1| GTP-binding protein [Fusobacterium sp. D12] gi|313686161|gb|EFS22996.1| GTP-binding protein [Fusobacterium sp. D12] Length = 442 Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ ++G NAGKSSL N L+ ++ IV+DI GTTRD + ++ + I DTAGIR Sbjct: 182 KLAVIGKPNAGKSSLVNRLSGEERTIVSDIAGTTRDAIDTLIEYKENRYMIIDTAGIRRK 241 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E + R ++ AD+ LL+ Sbjct: 242 SKVEESLEYYSVLRAIKTIKRADVCLLM 269 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN L VAIV D+PG TRD L + + G + DT G+ + Sbjct: 9 VAIVGRPNVGKSTLFNNLIGDRVAIVDDMPGVTRDRLYRETEWNGAEFVVVDTGGLEPAN 68 Query: 282 DIVEKEGIK-RTFLEVENADLILLL 305 + IK + + + AD+IL + Sbjct: 69 NDFMMTKIKEQAEVAMNEADVILFV 93 >gi|315918500|ref|ZP_07914740.1| GTP-binding protein [Fusobacterium gonidiaformans ATCC 25563] gi|317059700|ref|ZP_07924185.1| GTP-binding protein [Fusobacterium sp. 3_1_5R] gi|313685376|gb|EFS22211.1| GTP-binding protein [Fusobacterium sp. 3_1_5R] gi|313692375|gb|EFS29210.1| GTP-binding protein [Fusobacterium gonidiaformans ATCC 25563] Length = 442 Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ ++G NAGKSSL N L+ ++ IV+DI GTTRD + ++ + I DTAGIR Sbjct: 182 KLAVIGKPNAGKSSLVNRLSGEERTIVSDIAGTTRDAIDTLIEYKENRYMIIDTAGIRRK 241 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E + R ++ AD+ LL+ Sbjct: 242 SKVEESLEYYSVLRAIKTIKRADVCLLM 269 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN L VAIV D+PG TRD L + + G + DT G+ + Sbjct: 9 VAIVGRPNVGKSTLFNNLIGDRVAIVDDMPGVTRDRLYRETEWNGAEFVVVDTGGLEPAN 68 Query: 282 DIVEKEGIK-RTFLEVENADLILLL 305 + IK + + + AD+IL + Sbjct: 69 NEFMMTKIKEQAEVAMNEADVILFV 93 >gi|221133872|ref|ZP_03560177.1| GTP-binding protein EngA [Glaciecola sp. HTCC2999] Length = 481 Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 50/174 (28%), Positives = 90/174 (51%), Gaps = 14/174 (8%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ ++G N GKS+L N + ++ +V D PGTTRD + I ++ + + DTAG+R+ Sbjct: 196 KLAVVGKPNVGKSTLTNRILGEERVVVYDQPGTTRDSIFIPMERDEREYILIDTAGVRKR 255 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNIDFIFIGTKSDLYST 334 I VEK I +T +E A+++LL+ +E S +++S + FI +S + + Sbjct: 256 RKINEAVEKFSIVKTLQAIEEANVVLLVIDAREGISDQDLSL---LGFILNAGRSLVLA- 311 Query: 335 YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388 ++D L + E EL ++ + F +L F H + HL ++V+ Sbjct: 312 -VNKWDGLQAHVKDEIKRELDRRLGFV---DFARLHFISALHGTGVGHLFESVQ 361 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 44/84 (52%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L A+V D PG TRD +E + DT GI + Sbjct: 5 LALVGRPNVGKSTLFNRLTNTRDALVADFPGLTRDRKYGQAKVEDRQFIVIDTGGITGDE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ +++ L ++ AD++L L Sbjct: 65 AGIDAAMAEQSLLAIDEADVVLFL 88 >gi|24380270|ref|NP_722225.1| GTP-binding protein EngA [Streptococcus mutans UA159] gi|37999686|sp|Q8DS90|DER_STRMU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|24378281|gb|AAN59531.1|AE015016_15 phosphoglycerate dehydrogenase [Streptococcus mutans UA159] Length = 436 Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 73/148 (49%), Gaps = 31/148 (20%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRE 279 K ++G N GKSSL NA+ +D I + + GTTRD + T D EG + DTAG+R+ Sbjct: 176 KFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTTFTDEEGQEFTMIDTAGMRK 235 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336 + + EK + R ++ +D++L++ +N+++ I Sbjct: 236 SGKVYENTEKYSVMRAMRAIDRSDIVLMV--LNAEEGI---------------------- 271 Query: 337 EEYDHLISSF---TGEGLEELINKIKSI 361 EYD I+ F G+G+ ++NK +I Sbjct: 272 REYDKRIAGFAHEAGKGIVVVVNKWDAI 299 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 45/84 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN +A + ++IV D+ G TRD + + I DT GI + D Sbjct: 6 VAIVGRPNVGKSALFNRIAGERISIVEDVEGVTRDRIYTKAEWLNRQFSIIDTGGIDDVD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + + + AD+I+ + Sbjct: 66 APFMEQIKHQADIAMTEADVIVFV 89 >gi|257462859|ref|ZP_05627265.1| GTP-binding protein [Fusobacterium sp. D12] Length = 438 Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ ++G NAGKSSL N L+ ++ IV+DI GTTRD + ++ + I DTAGIR Sbjct: 178 KLAVIGKPNAGKSSLVNRLSGEERTIVSDIAGTTRDAIDTLIEYKENRYMIIDTAGIRRK 237 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E + R ++ AD+ LL+ Sbjct: 238 SKVEESLEYYSVLRAIKTIKRADVCLLM 265 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN L VAIV D+PG TRD L + + G + DT G+ + Sbjct: 5 VAIVGRPNVGKSTLFNNLIGDRVAIVDDMPGVTRDRLYRETEWNGAEFVVVDTGGLEPAN 64 Query: 282 DIVEKEGIK-RTFLEVENADLILLL 305 + IK + + + AD+IL + Sbjct: 65 NDFMMTKIKEQAEVAMNEADVILFV 89 >gi|206890575|ref|YP_002249177.1| ribosome-associated GTPase EngA [Thermodesulfovibrio yellowstonii DSM 11347] gi|238058979|sp|B5YFX9|DER_THEYD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|206742513|gb|ACI21570.1| ribosome-associated GTPase EngA [Thermodesulfovibrio yellowstonii DSM 11347] Length = 448 Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 52/167 (31%), Positives = 81/167 (48%), Gaps = 33/167 (19%) Query: 220 YKIVILGHSNAGKSSLFNALAKKD---VAIVTDIPGTTRDVL--TIDLDLEGYLVKISDT 274 + +VI+G N GKS+LFN + K D AI PG TRD+ D + ++V DT Sbjct: 2 FTVVIVGRPNVGKSTLFNRMIKSDEKIKAITDKFPGVTRDINYGVAKWDDKEFIV--VDT 59 Query: 275 AGI---RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNI----------- 320 G + +DI++K+ +++ + + +ADLI+ L + KE P +I Sbjct: 60 GGFFPEEKIEDIIQKQMLEQIEMAISDADLIIHLLD---SKEGLLPDDIETARQLRQTGK 116 Query: 321 DFIFIGTKSDLYSTYTEEYDHL---------ISSFTGEGLEELINKI 358 D +++ K D S + YD IS TG G +ELI+KI Sbjct: 117 DILWVVNKIDDPSKLSRIYDFYSIGTEELIPISGITGYGFDELIDKI 163 Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 49/98 (50%), Gaps = 9/98 (9%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 +N KI ++G N GKS++ NAL K IV+ IPGTTRD + G + DTAG Sbjct: 178 QNLPKIAVVGRPNVGKSTIINALLGKKRMIVSPIPGTTRDTIDAICTYYGKKYLLIDTAG 237 Query: 277 IRE---------TDDIVEKEGIKRTFLEVENADLILLL 305 I+ + VE+ + +E AD+ +L+ Sbjct: 238 IKRLSYYKKEISQEIYVERLAYFKALRSIERADVAILV 275 >gi|330996163|ref|ZP_08320053.1| hydrogenase maturation GTPase HydF [Paraprevotella xylaniphila YIT 11841] gi|329573667|gb|EGG55258.1| hydrogenase maturation GTPase HydF [Paraprevotella xylaniphila YIT 11841] Length = 399 Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 84/164 (51%), Gaps = 23/164 (14%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI-SDTAG 276 N + I + G N+GKSSL N L ++VA+V+D+PGTT DV+ +++L G + DTAG Sbjct: 10 NRFHIGLFGRRNSGKSSLVNMLTGQEVAVVSDVPGTTTDVILKNIELPGIGASVLVDTAG 69 Query: 277 IRETDDIVEKEG--IKRTFLEVENADLILLLKE---INSKKEISF-----PKNIDFIFI- 325 DD E G +K+T DL L++ ++KE ++ +I ++I Sbjct: 70 Y---DDEGELGGLRVKQTVNAARWVDLALIVVSGLPDGAEKEKAWGERFQADDIPVLYIY 126 Query: 326 -------GTKSDLYSTYTEEYDHL-ISSFTGEGLEELINKIKSI 361 G+ + + T D + +S+ TGEG + L++ + + Sbjct: 127 NKVDEDGGSHAGAWRTALGATDVVSVSARTGEGRDCLLSAMAEV 170 >gi|319901975|ref|YP_004161703.1| iron-only hydrogenase maturation protein HydF [Bacteroides helcogenes P 36-108] gi|319417006|gb|ADV44117.1| iron-only hydrogenase maturation protein HydF [Bacteroides helcogenes P 36-108] Length = 402 Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 36/92 (39%), Positives = 54/92 (58%), Gaps = 3/92 (3%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTA 275 N I I G N+GKSSL NAL +D A+V+ +PGTT D + +++ L G + I DT Sbjct: 14 NRLHIAIFGRRNSGKSSLVNALTGQDTALVSSVPGTTTDPVMKAMEVHLLGSCLFI-DTP 72 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKE 307 G + ++ + + ++RT VE D+ LLL E Sbjct: 73 GFDDDENKLGEMRVERTLQIVERTDIALLLCE 104 >gi|260662130|ref|ZP_05863026.1| ribosome-associated GTPase EngA [Lactobacillus fermentum 28-3-CHN] gi|260553513|gb|EEX26405.1| ribosome-associated GTPase EngA [Lactobacillus fermentum 28-3-CHN] Length = 437 Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 41/154 (26%), Positives = 73/154 (47%), Gaps = 17/154 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN +A + +AIV D PG TRD L + G + DT GI +D Sbjct: 6 VAIVGRPNVGKSTLFNRIAGERIAIVEDTPGVTRDRLYAHGEWLGKNFSMIDTGGIEMSD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333 + + ++ + +E AD+I+++ + + +I + N + K D Sbjct: 66 QPLLTQIRQQAEIAIEEADVIIMVVNVENGVTDADEQVAQILYRSNKPVVLAVNKVDNPE 125 Query: 334 TYTEEYD---------HLISSFTGEGLEELINKI 358 + YD + +SS G GL ++++ + Sbjct: 126 RRLDVYDFYQLGLGEPYPVSSVHGVGLGDMLDAV 159 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 50/85 (58%), Gaps = 4/85 (4%) Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDI 283 +G N GKSSL NA+ ++ IV+D+ GTTRD + +G + DTAGI++ + Sbjct: 180 IGRPNVGKSSLVNAILGENRVIVSDMAGTTRDAINTQFTAKDGREFTMVDTAGIKKKGKL 239 Query: 284 ---VEKEGIKRTFLEVENADLILLL 305 E+ + R+ ++N+D++L++ Sbjct: 240 YENTERYALMRSMRAIDNSDVVLVV 264 >gi|257453165|ref|ZP_05618464.1| GTP-binding protein [Fusobacterium sp. 3_1_5R] gi|257467370|ref|ZP_05631681.1| GTP-binding protein [Fusobacterium gonidiaformans ATCC 25563] Length = 438 Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ ++G NAGKSSL N L+ ++ IV+DI GTTRD + ++ + I DTAGIR Sbjct: 178 KLAVIGKPNAGKSSLVNRLSGEERTIVSDIAGTTRDAIDTLIEYKENRYMIIDTAGIRRK 237 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E + R ++ AD+ LL+ Sbjct: 238 SKVEESLEYYSVLRAIKTIKRADVCLLM 265 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN L VAIV D+PG TRD L + + G + DT G+ + Sbjct: 5 VAIVGRPNVGKSTLFNNLIGDRVAIVDDMPGVTRDRLYRETEWNGAEFVVVDTGGLEPAN 64 Query: 282 DIVEKEGIK-RTFLEVENADLILLL 305 + IK + + + AD+IL + Sbjct: 65 NEFMMTKIKEQAEVAMNEADVILFV 89 >gi|332711902|ref|ZP_08431832.1| ribosome-associated GTPase EngA [Lyngbya majuscula 3L] gi|332349230|gb|EGJ28840.1| ribosome-associated GTPase EngA [Lyngbya majuscula 3L] Length = 463 Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 34/96 (35%), Positives = 53/96 (55%), Gaps = 11/96 (11%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD--------LEGYLVKIS 272 K+ I+G N GKSSL N L ++ +IV+ I GTTRD + + + E ++ Sbjct: 178 KVAIVGRPNVGKSSLLNTLTGENRSIVSPISGTTRDAIDMVVQRSADPEKGTEAQTYRLI 237 Query: 273 DTAGIRETDDIV---EKEGIKRTFLEVENADLILLL 305 DTAGIR+ ++ E GI R F + +D++LL+ Sbjct: 238 DTAGIRKKKNVTYGPEFFGINRAFKAIRRSDVVLLV 273 >gi|146328838|ref|YP_001209431.1| GTP-binding family protein [Dichelobacter nodosus VCS1703A] gi|146232308|gb|ABQ13286.1| GTP-binding family protein [Dichelobacter nodosus VCS1703A] Length = 449 Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 52/88 (59%), Gaps = 4/88 (4%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID-LDLEGYLVKISDTAGIR-- 278 + +LG NAGKS+L N L ++ + + + GTTRD + I +D EG + DTAGIR Sbjct: 185 LAVLGRPNAGKSTLLNRLLGEERLVASPVAGTTRDAIRIPYVDNEGDAFTLIDTAGIRRK 244 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305 DD +EK I + +E A++++L+ Sbjct: 245 ARVDDKIEKFSIVKALEAIEQANVVILV 272 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 33/60 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + AIV++ G TRD + L G + DT G+ T+ Sbjct: 8 VALVGRPNVGKSTLFNTLTRSRQAIVSNKAGLTRDRIYARTTLAGVPCMLIDTGGMLNTE 67 >gi|260424846|ref|ZP_05733464.2| ribosome-associated GTPase EngA [Dialister invisus DSM 15470] gi|260403366|gb|EEW96913.1| ribosome-associated GTPase EngA [Dialister invisus DSM 15470] Length = 454 Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 36/88 (40%), Positives = 51/88 (57%), Gaps = 6/88 (6%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--- 278 + I+G N GKS++ N LA+K V+IV DIPG TRD + D+ + DT GI Sbjct: 18 VAIVGRPNVGKSTIINGLAQKRVSIVEDIPGVTRDRIYCDVRWLDREFTMIDTGGIEFRD 77 Query: 279 ETDDIVEKEGIKRTF-LEVENADLILLL 305 E D I +GI++ L +E AD+IL + Sbjct: 78 EADQI--SDGIRQQAQLAMEEADVILFV 103 Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 29/92 (31%), Positives = 51/92 (55%), Gaps = 3/92 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + I+G N GKS+L N+L + ++V D GTTRD + +G + DTAG+R+ Sbjct: 190 RTAIVGRPNVGKSTLINSLLGYERSLVADEMGTTRDAVDSVWKYKGKTFILVDTAGMRKK 249 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEIN 309 D+ +EK + R+ ++N D+ + + + N Sbjct: 250 GKIDEPLEKYSVIRSIRAIDNCDVAIFVLDAN 281 >gi|167646460|ref|YP_001684123.1| GTP-binding protein EngA [Caulobacter sp. K31] gi|167348890|gb|ABZ71625.1| small GTP-binding protein [Caulobacter sp. K31] Length = 602 Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 38/91 (41%), Positives = 53/91 (58%), Gaps = 11/91 (12%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI-----DLDLEGYLVKISDTA 275 K+ I+G N GKS+LFN LA + +A+V D PG TRD DLDLE + DTA Sbjct: 4 KLAIVGRPNVGKSTLFNRLAGRKLALVDDQPGVTRDRRFAHGRLGDLDLE-----LIDTA 58 Query: 276 GIRE-TDDIVEKEGIKRTFLEVENADLILLL 305 G + TD+ +E +T L ++ AD+ LL+ Sbjct: 59 GFEDVTDESLEARMRAQTELAIDEADVSLLV 89 Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 39/66 (59%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI I+G NAGKS+L N L + + G TRD +++D D G V++ DTAG+R+ Sbjct: 181 KIAIVGRPNAGKSTLINRLIGEQRLLTGPEAGITRDSISVDWDWGGRKVRLVDTAGLRKK 240 Query: 281 DDIVEK 286 + EK Sbjct: 241 AKVNEK 246 >gi|315641243|ref|ZP_07896320.1| ribosome-associated GTPase EngA [Enterococcus italicus DSM 15952] gi|315483010|gb|EFU73529.1| ribosome-associated GTPase EngA [Enterococcus italicus DSM 15952] Length = 442 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 50/182 (27%), Positives = 86/182 (47%), Gaps = 34/182 (18%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDD 282 ++G N GKSSL NA+ +D IV+D+ GTTRD + E G + DTAG+R+ Sbjct: 185 LIGRPNVGKSSLINAILGEDRVIVSDVEGTTRDAIDTHFTSESGQEFTMIDTAGMRKRGK 244 Query: 283 I---VEKEGIKRTFLEVENADLILLLKEINSKKEI----------SFPKNIDFIFIGTKS 329 + EK + R +E +D++L++ +N+ + I + + I I K Sbjct: 245 VYESTEKYSVMRAMRAIERSDVVLVV--LNADEGIREQDKKIAGYAHEEGRGIIIIVNKW 302 Query: 330 DLYSTYT-----------EEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLPF 371 DL T EE+ +L +S+ T + L +L I+S+ N+ ++P Sbjct: 303 DLVKKDTNTMRDFEKEIREEFQYLDYAPILFVSAMTKQRLNQLPEMIESVSMNQSMRVPS 362 Query: 372 SI 373 ++ Sbjct: 363 AV 364 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 51/92 (55%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273 EII I I+G N GKS++FN +A + ++IV D PG TRD + + G I D Sbjct: 4 EIIMAKPTIAIVGRPNVGKSTVFNRIAGERISIVEDTPGVTRDRIYATGEWLGKDFSIID 63 Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 T GI +D+ ++ + + ++ AD+I+ + Sbjct: 64 TGGIDLSDEPFMEQIKHQAEIAIDEADVIVFV 95 >gi|294155403|ref|YP_003559787.1| GTP-binding protein Era [Mycoplasma crocodyli MP145] gi|291600406|gb|ADE19902.1| GTP-binding protein Era [Mycoplasma crocodyli MP145] Length = 290 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 33/83 (39%), Positives = 48/83 (57%) Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282 ILG N GKSSL N++ +++IVT P TTRD +T + EGY + +DT GI + + Sbjct: 7 TILGRPNVGKSSLLNSILSYNLSIVTPTPQTTRDQITGVYNEEGYQIIFTDTPGIHKPIN 66 Query: 283 IVEKEGIKRTFLEVENADLILLL 305 + + K + V+N DL L L Sbjct: 67 KLGEALNKNAYDTVKNNDLALFL 89 >gi|224826453|ref|ZP_03699555.1| small GTP-binding protein [Lutiella nitroferrum 2002] gi|224601554|gb|EEG07735.1| small GTP-binding protein [Lutiella nitroferrum 2002] Length = 463 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 53/88 (60%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 K ++G N GKS+L NA+ ++ I D GTTRD + ID + + + I DTAG+R Sbjct: 176 KFAVIGRPNVGKSTLVNAILGEERVIAFDQAGTTRDSIYIDFERDDHTYTIIDTAGVRRR 235 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305 + ++ +EK + +T +E+A++ +L+ Sbjct: 236 GKVNETIEKFSVIKTMKAIEDANVAVLV 263 Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 9/89 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD + + DT G Sbjct: 5 VALVGRPNVGKSTLFNRLTRSRDALVADQPGLTRDRHYGHGRVGDKPYLVVDTGGFEPVV 64 Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305 D EGI ++T V+ AD I+ L Sbjct: 65 D----EGILFEMARQTLQAVDEADAIVFL 89 >gi|255544860|ref|XP_002513491.1| GTP-binding protein enga, putative [Ricinus communis] gi|223547399|gb|EEF48894.1| GTP-binding protein enga, putative [Ricinus communis] Length = 624 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 7/93 (7%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAGIRE- 279 I I+G N GKSS+ NAL +D IV+ I GTTRD + + +G ++ DTAGIR Sbjct: 352 IAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFSGPDGQKFRLIDTAGIRRR 411 Query: 280 -----TDDIVEKEGIKRTFLEVENADLILLLKE 307 + + E + R F + +D++ L+ E Sbjct: 412 AAVASSGSLTEALSVNRAFRAIRRSDVVALVIE 444 Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust. Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 4/76 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI--- 277 ++ I+G N GKS+LFN L + AIV D PG TRD L + + DT G+ Sbjct: 142 RVAIVGRPNVGKSALFNRLVGGNKAIVVDEPGVTRDRLYGRSFWGDFEFMVVDTGGVLTI 201 Query: 278 -RETDDIVEKEGIKRT 292 + D+++E I T Sbjct: 202 SQSQDNVMEDLAITTT 217 >gi|116051824|ref|YP_789333.1| GTP-binding protein EngA [Pseudomonas aeruginosa UCBPP-PA14] gi|122260971|sp|Q02RV3|DER_PSEAB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|115587045|gb|ABJ13060.1| putative GTP-binding protein EngA [Pseudomonas aeruginosa UCBPP-PA14] Length = 493 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 53/92 (57%), Gaps = 3/92 (3%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 ++G KI I+G N GKS+L N + ++ IV D GTTRD + I + + + DTAG Sbjct: 195 KDGIKIAIIGRPNVGKSTLVNRMLGEERVIVYDQAGTTRDSIYIPFERNEEMYTLIDTAG 254 Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLL 305 +R I VEK + +T +++A++++ + Sbjct: 255 VRRRGKIFEAVEKFSVVKTLQAIQDANVVIFV 286 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 45/84 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L K AIV + G TRD + +G + DT GI + Sbjct: 5 IALVGRPNVGKSTLFNRLTKSRDAIVAEYAGLTRDRQYGEARWQGRTYIVIDTGGISGDE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + ++ + +++ +E AD +L L Sbjct: 65 EGIDAKMAEQSLQAIEEADAVLFL 88 >gi|238597293|ref|XP_002394286.1| hypothetical protein MPER_05849 [Moniliophthora perniciosa FA553] gi|215463079|gb|EEB95216.1| hypothetical protein MPER_05849 [Moniliophthora perniciosa FA553] Length = 51 Score = 56.6 bits (135), Expect = 8e-06, Method: Composition-based stats. Identities = 23/51 (45%), Positives = 35/51 (68%) Query: 65 LLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSR 115 + + F +P+SFT ED E H+H G A+V+ +L+ L+ +P R A PGEF+R Sbjct: 1 MAVFFRAPKSFTTEDVLELHIHSGRAIVSAVLKALSSLPFCRPAEPGEFTR 51 >gi|83590169|ref|YP_430178.1| small GTP-binding protein domain-containing protein [Moorella thermoacetica ATCC 39073] gi|123524458|sp|Q2RIV4|DER_MOOTA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|83573083|gb|ABC19635.1| Small GTP-binding protein domain [Moorella thermoacetica ATCC 39073] Length = 438 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 3/91 (3%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 + K+ I+G N GKSSL N L ++ IV+D+PGTTRD + + + DTAG+ Sbjct: 174 DALKVAIVGRPNVGKSSLVNRLLGEERVIVSDLPGTTRDAVDTYIRRGEREYILIDTAGM 233 Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLL 305 R I E+ + R VE AD++L++ Sbjct: 234 RRKSRITVPTERYSVLRALRAVERADVVLVI 264 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 3/95 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RET 280 + I+G N GKS+LFN + VAIV D PG TRD L D + G + DT GI Sbjct: 6 VAIIGRPNVGKSTLFNRITGGRVAIVEDTPGVTRDRLYRDAEWCGRQFTLVDTGGIATHQ 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 DD + + ++ AD+I+ L ++S+ I+ Sbjct: 66 DDPLVARVRSQAEQALKEADVIIFL--VDSRTGIT 98 >gi|169348409|ref|ZP_02866347.1| hypothetical protein CLOSPI_00124 [Clostridium spiroforme DSM 1552] gi|169293878|gb|EDS76011.1| hypothetical protein CLOSPI_00124 [Clostridium spiroforme DSM 1552] Length = 434 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 52/85 (61%), Gaps = 3/85 (3%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 I+G N GKSSL N++ ++ IV++I GTTRD + + +G ++ DTAG+R+ I Sbjct: 178 IIGRPNVGKSSLTNSILGEERVIVSNIEGTTRDAIDTVFEKDGQKYRVIDTAGMRKKGKI 237 Query: 284 ---VEKEGIKRTFLEVENADLILLL 305 VEK + R +E +D+I+++ Sbjct: 238 YENVEKYSVLRALSSIEKSDVIVVV 262 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 27/94 (28%), Positives = 50/94 (53%), Gaps = 2/94 (2%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G +N GKS++FN + + ++IV DI G TRD + ++ DT GI D Sbjct: 5 VAIVGRANVGKSTIFNRIVGERISIVEDIAGVTRDRIYATASWLTKEFRLIDTGGIELKD 64 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + + + +E ADLI+ + +N ++ ++ Sbjct: 65 ASFTTQIKMQAEIAIEEADLIIFV--VNGREGVT 96 >gi|160888145|ref|ZP_02069148.1| hypothetical protein BACUNI_00553 [Bacteroides uniformis ATCC 8492] gi|160890555|ref|ZP_02071558.1| hypothetical protein BACUNI_02997 [Bacteroides uniformis ATCC 8492] gi|156860287|gb|EDO53718.1| hypothetical protein BACUNI_02997 [Bacteroides uniformis ATCC 8492] gi|156862280|gb|EDO55711.1| hypothetical protein BACUNI_00553 [Bacteroides uniformis ATCC 8492] Length = 396 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 42/120 (35%), Positives = 62/120 (51%), Gaps = 8/120 (6%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDTA 275 N I + G N+GKSSL NAL +D A+V+ PGTT D +T +++ G + I DT Sbjct: 8 NRLHIAVFGRRNSGKSSLVNALTGQDTALVSATPGTTTDPVTKAMEVYPLGPCLFI-DTP 66 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF-----PKNIDFIFIGTKSD 330 G + + + ++RT VE AD+ LLL E + E + + I I I K+D Sbjct: 67 GFDDDEGELGGMRVERTLKTVEKADIALLLYEADGTLEQQWLKLLAAREIPVILILNKAD 126 >gi|51473858|ref|YP_067615.1| GTP-binding protein EngA [Rickettsia typhi str. Wilmington] gi|81692277|sp|Q68W59|DER_RICTY RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|51460170|gb|AAU04133.1| probable GTP-binding protein EngA [Rickettsia typhi str. Wilmington] Length = 447 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L+ + AIV D+PG TRD D + + + DT G+ E Sbjct: 6 ITLVGRPNVGKSTLFNRLSIRKKAIVHDLPGVTRDRKYTDGKIGSFKFLLIDTPGLEENP 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 D + K +++T + ADLI L+ Sbjct: 66 DNMGKRLMEQTTQAILEADLICLM 89 Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust. Identities = 55/217 (25%), Positives = 88/217 (40%), Gaps = 32/217 (14%) Query: 109 NPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGEL------SSLYGQWI 162 NP +R E +LEA DLI L ++G SG L SS ++ Sbjct: 64 NPDNMGKRLMEQTTQAILEA----DLIC--------LMVDGRSGVLPDDKLLSSFVRKYN 111 Query: 163 DKLTHIRSFIEADLDFSEEEDVQNFSSKEV-----------LNDILFLKNDISSHISQGK 211 + + E DF +E F S + L D + K I I + Sbjct: 112 KHCILVVNKCEKAFDFDKEYYKLGFDSIVIISAEHGTGLIDLYDEIIAKLSIKESIERNI 171 Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 + +IV+ G NAGKS+ NA+ + + G TR+ + ID + +K+ Sbjct: 172 ADPFRGDCLQIVVSGRPNAGKSTFINAIINDERLLTGPEAGITRESIEIDWQYKNTHIKL 231 Query: 272 SDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305 DTAG+R+ I +EK T ++ A+ ++L+ Sbjct: 232 IDTAGLRKKSTITASLEKLSTSDTINAIKFANTVILM 268 >gi|182414655|ref|YP_001819721.1| small GTP-binding protein [Opitutus terrae PB90-1] gi|177841869|gb|ACB76121.1| small GTP-binding protein [Opitutus terrae PB90-1] Length = 501 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 28/56 (50%), Positives = 37/56 (66%), Gaps = 2/56 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 + I+G N GKS LFN LA+K ++IV D PG TRDV++ D+ GY + DT GI Sbjct: 5 VAIVGRPNVGKSRLFNRLARKRISIVHDQPGVTRDVVSTDIADGGYT--LLDTGGI 58 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 8/92 (8%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-----YLVKISDTAG 276 + +G N GKSSL N L + D IV+++PGTTRD + + + G Y ++ DTAG Sbjct: 182 VCFIGRPNVGKSSLSNRLLQSDRLIVSEVPGTTRDAIELPFEFIGRDGKSYPFRLIDTAG 241 Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLL 305 I+ + VE R+ ++ D++ L+ Sbjct: 242 IKAATKLASPVEYFSRLRSLDAIKETDVVFLV 273 >gi|227524465|ref|ZP_03954514.1| GTP-binding protein EngA [Lactobacillus hilgardii ATCC 8290] gi|227088335|gb|EEI23647.1| GTP-binding protein EngA [Lactobacillus hilgardii ATCC 8290] Length = 435 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 30/96 (31%), Positives = 52/96 (54%), Gaps = 3/96 (3%) Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272 G + + + I+G N GKSSL NA+ ++ IV+D+ GTTRD + + + + Sbjct: 168 GNVPNDDIRFSIIGRPNVGKSSLVNAILGENRVIVSDVAGTTRDAIDTRFEADNIKFTMV 227 Query: 273 DTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305 DTAGIR+ + E+ + R ++ +D+IL + Sbjct: 228 DTAGIRKRGKVYENTERYSVMRAMKAIDQSDVILFV 263 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 44/84 (52%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + +G N GKS++FN +A ++IV D PG TRD + + + DT GI+ +D Sbjct: 6 VAFIGRPNVGKSTIFNRIAGDRISIVEDTPGVTRDRIYTHAEWLANEFAMIDTGGIQISD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + + +E AD+I+ + Sbjct: 66 APFNTQIKNQAEIAIEEADVIVFI 89 >gi|289207923|ref|YP_003459989.1| ribosome-associated GTPase EngA [Thioalkalivibrio sp. K90mix] gi|288943554|gb|ADC71253.1| ribosome-associated GTPase EngA [Thioalkalivibrio sp. K90mix] Length = 484 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 28/95 (29%), Positives = 53/95 (55%), Gaps = 3/95 (3%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G ++ I+G N GKS+L N + + + TD+ GTTRD + + +G + DTAG+R Sbjct: 198 GIRVAIVGRPNVGKSTLVNRILGDERVVATDVAGTTRDSIFVPFSRDGQDYTLIDTAGVR 257 Query: 279 ---ETDDIVEKEGIKRTFLEVENADLILLLKEINS 310 +++EK + +T +E A +++L+ + + Sbjct: 258 RRARVHEVIEKFSVIKTLQAIEAAHVVILVMDAQA 292 Score = 40.4 bits (93), Expect = 0.50, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 42/84 (50%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L + A+V D+ G TRD + + + DT G+ Sbjct: 5 IALVGRPNVGKSTLFNQLTRSRDALVADVAGLTRDRQYGIGKVGDFPYLVVDTGGLSGEG 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 +++ ++T V AD +L L Sbjct: 65 AEMDRAMAEQTQRAVAEADHVLFL 88 >gi|312862558|ref|ZP_07722800.1| ribosome biogenesis GTPase Der [Streptococcus vestibularis F0396] gi|322517433|ref|ZP_08070306.1| ribosome-associated GTPase EngA [Streptococcus vestibularis ATCC 49124] gi|311101963|gb|EFQ60164.1| ribosome biogenesis GTPase Der [Streptococcus vestibularis F0396] gi|322123915|gb|EFX95474.1| ribosome-associated GTPase EngA [Streptococcus vestibularis ATCC 49124] Length = 436 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 74/145 (51%), Gaps = 31/145 (21%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID-LDLEGYLVKISDTAGIRETDD 282 ++G N GKSSL NA+ +D I + I GTTRD + + +D +G + DTAG+R++ Sbjct: 179 LIGRPNVGKSSLINAILGEDRVIASPIAGTTRDAIDTNFVDSDGQEYTMIDTAGMRKSGK 238 Query: 283 I---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY 339 + EK + R+ ++ +D++L++ IN+++ I EY Sbjct: 239 VYENTEKYSVMRSMRAIDRSDIVLMV--INAEEGI----------------------REY 274 Query: 340 DHLISSF---TGEGLEELINKIKSI 361 D I+ F G+G+ ++NK +I Sbjct: 275 DKRIAGFAHEAGKGIIIVVNKWDTI 299 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 45/84 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN +A + ++IV D+ G TRD + + + DT GI + D Sbjct: 6 VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTSAEWLNRQFSLIDTGGIDDVD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + + + AD+I+ + Sbjct: 66 APFMEQIKHQADIAMTEADVIVFV 89 >gi|329964947|ref|ZP_08301955.1| hydrogenase maturation GTPase HydF [Bacteroides fluxus YIT 12057] gi|328524588|gb|EGF51656.1| hydrogenase maturation GTPase HydF [Bacteroides fluxus YIT 12057] Length = 400 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 41/123 (33%), Positives = 66/123 (53%), Gaps = 8/123 (6%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDTA 275 N I + G N+GKSSL NAL +D A+V+ IPGTT D + +++ G + I DT Sbjct: 14 NRLHIALFGRRNSGKSSLVNALTGQDTALVSSIPGTTTDPVMKAMEVHPLGPCLFI-DTP 72 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE-----ISFPKNIDFIFIGTKSD 330 G + + + ++RT +E D+ LLL E ++E I ++I I + K+D Sbjct: 73 GFDDDEGELGGMRVERTLKMMERTDIALLLCEDGGEQEKEWLRILAARDIPVIPVLNKAD 132 Query: 331 LYS 333 L++ Sbjct: 133 LHT 135 >gi|253571982|ref|ZP_04849387.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|251838579|gb|EES66665.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 405 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 2/89 (2%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276 N I + G N+GKSSL NAL +D A+V+D PGTT D + +++ G DT G Sbjct: 10 NRLHIALFGKRNSGKSSLINALTGQDTALVSDTPGTTTDPVQKAMEIHGIGPCLFIDTPG 69 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL 305 + ++ + I+RT+ VE D+ LLL Sbjct: 70 FDDEGELGNRR-IERTWKAVEKTDIALLL 97 >gi|167623345|ref|YP_001673639.1| small GTP-binding protein [Shewanella halifaxensis HAW-EB4] gi|167353367|gb|ABZ75980.1| small GTP-binding protein [Shewanella halifaxensis HAW-EB4] Length = 413 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 53/177 (29%), Positives = 80/177 (45%), Gaps = 20/177 (11%) Query: 213 GEIIRNG--YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LV 269 G+I G Y+I ILG NAGKSSL N + + VAIV+DI GTT D + +L V Sbjct: 12 GQIAPRGMRYQIAILGRRNAGKSSLLNMIVGQHVAIVSDIKGTTTDAVAKPYELLPLGPV 71 Query: 270 KISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF-------PKNIDF 322 DTAGI + + E+ +K T + AD+ LL+ + E F + F Sbjct: 72 TFFDTAGIDDNGALGEQR-VKATRHVLYRADMALLVADDQGLTEHEFALIEEMTALKLPF 130 Query: 323 IFIGTKSDLYSTYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLP 370 + + K D+ E+ +S+ G G +E+ I ++ K+ P Sbjct: 131 LIVFNKVDICMPTAEDIGFCRQRKLPFIAVSAAKGLGDKEVKRLISELVPANLKEQP 187 >gi|160939128|ref|ZP_02086479.1| hypothetical protein CLOBOL_04022 [Clostridium bolteae ATCC BAA-613] gi|158438091|gb|EDP15851.1| hypothetical protein CLOBOL_04022 [Clostridium bolteae ATCC BAA-613] Length = 442 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 34/83 (40%), Positives = 47/83 (56%), Gaps = 3/83 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I ++G N GKSS+ N L ++ IV+DI GTTRD + ++ EG DTAG+R Sbjct: 179 RIAVVGKPNVGKSSIINKLVGENRVIVSDIAGTTRDAVDTEVIHEGTPYVFIDTAGLRRK 238 Query: 281 DDI---VEKEGIKRTFLEVENAD 300 I +E+ I RT VE AD Sbjct: 239 SKIKEELERYSIIRTVSAVERAD 261 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 50/88 (56%), Gaps = 1/88 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFN +A ++IV D PG TRD + D D + DT GI ++ Sbjct: 6 VAIVGRPNVGKSTLFNVIAGDTISIVKDTPGVTRDRIYADCDWLNMNFTLIDTGGIEPDS 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308 DI+ + ++ + + AD+I+ + ++ Sbjct: 66 KDIILSQMREQAEIAISTADVIIFIVDV 93 >gi|194337372|ref|YP_002019166.1| small GTP-binding protein [Pelodictyon phaeoclathratiforme BU-1] gi|238693397|sp|B4SED0|DER_PELPB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|194309849|gb|ACF44549.1| small GTP-binding protein [Pelodictyon phaeoclathratiforme BU-1] Length = 437 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 49/89 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN + ++ AIV PG TRD + + +G + DT G Sbjct: 5 IALVGRPNVGKSTLFNRILRQRSAIVDPTPGVTRDRHIAEGEWQGKQFLLMDTGGYNADG 64 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310 D + +++T + + +AD+++ L ++ + Sbjct: 65 DTISMAMLEQTLMAIRDADIVIFLTDVRA 93 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ ++G N GKSS N+L + IV++IPGTTRD + + + DTAG+R+ Sbjct: 179 QLAVVGRPNVGKSSFVNSLLGSNRLIVSNIPGTTRDAIDSRFIRKQQEFILIDTAGLRKR 238 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 I +E RT +E D+ L++ Sbjct: 239 TKIDAGIEYYSSLRTEKAIERCDVALVM 266 >gi|241667168|ref|ZP_04754746.1| GTP-binding protein EngA [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254875720|ref|ZP_05248430.1| GTP-binding protein engA [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254841741|gb|EET20155.1| GTP-binding protein engA [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 465 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 31/105 (29%), Positives = 62/105 (59%), Gaps = 5/105 (4%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273 E R+G ++G N GKS+L N + +D +V D+PGTT D ++I + G+ I D Sbjct: 178 EQQRHGIHFSLIGRPNVGKSTLTNRMLGEDRVVVFDMPGTTIDSVSIPFERHGHKYTIVD 237 Query: 274 TAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 TAG+R + +EK + +T ++++++++ + +++++ IS Sbjct: 238 TAGVRRRGKVKQTLEKFSVIKTLQAIQDSNVVVAV--VDAREGIS 280 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 4/86 (4%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGIRE 279 + I+G +N GKS+LFN L A+V D G TRD D GYLV DT GI + Sbjct: 5 VAIVGRANVGKSTLFNVLTNSRDALVFDFEGVTRDRQYGQAKYDDLGYLV--VDTGGISD 62 Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305 D ++ K++ + ++ A+L+ + Sbjct: 63 QDAGFDEFMAKQSQMAIDEANLVFFV 88 >gi|227515173|ref|ZP_03945222.1| GTP-binding protein EngA [Lactobacillus fermentum ATCC 14931] gi|227086505|gb|EEI21817.1| GTP-binding protein EngA [Lactobacillus fermentum ATCC 14931] Length = 437 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 41/154 (26%), Positives = 73/154 (47%), Gaps = 17/154 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN +A + +AIV D PG TRD L + G + DT GI +D Sbjct: 6 VAIVGRPNVGKSTLFNRIAGERIAIVEDTPGVTRDRLYAHGEWLGKNFSMIDTGGIEMSD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333 + + ++ + +E AD+I+++ + + +I + N + K D Sbjct: 66 QPLLTQIRQQAEIAIEEADVIIMVVNVENGVTDADEQVAQILYRSNKPVVLAVNKVDNPE 125 Query: 334 TYTEEYD---------HLISSFTGEGLEELINKI 358 + YD + +SS G GL ++++ + Sbjct: 126 RRLDVYDFYQLGLGEPYPVSSVHGVGLGDMLDAV 159 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 50/85 (58%), Gaps = 4/85 (4%) Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDI 283 +G N GKSSL NA+ ++ IV+D+ GTTRD + +G + DTAGI++ + Sbjct: 180 IGRPNVGKSSLVNAILGENRVIVSDMAGTTRDAINTQFTAKDGREFTMVDTAGIKKKGKL 239 Query: 284 ---VEKEGIKRTFLEVENADLILLL 305 E+ + R+ ++++D++L++ Sbjct: 240 YENTERYALMRSMRAIDDSDVVLVV 264 >gi|161507460|ref|YP_001577414.1| GTP-binding protein EngA [Lactobacillus helveticus DPC 4571] gi|260101628|ref|ZP_05751865.1| ribosome-associated GTPase EngA [Lactobacillus helveticus DSM 20075] gi|172048280|sp|A8YV35|DER_LACH4 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|160348449|gb|ABX27123.1| phosphoglycerate dehydrogenase [Lactobacillus helveticus DPC 4571] gi|260084561|gb|EEW68681.1| ribosome-associated GTPase EngA [Lactobacillus helveticus DSM 20075] Length = 435 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 46/179 (25%), Positives = 84/179 (46%), Gaps = 29/179 (16%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 ++G N GKSS+ N L +D IV + GTTRD + +G K+ DTAGIR + Sbjct: 179 VIGRPNVGKSSIVNKLLGEDRVIVANEEGTTRDAVDTPFTKDGVKFKVVDTAGIRRRGKV 238 Query: 284 VEKE---GIKRTFLEVENADLILLLKEINS-----KKEI---SFPKNIDFIFIGTKSDL- 331 EK + R +E +D++LL+ + ++ K + + I + K DL Sbjct: 239 YEKTEKYSVLRAVAAIERSDVVLLVLDASTGIREQDKHVAGYAHEAGRGIIIVVNKWDLP 298 Query: 332 --YSTYTEEYDH---------------LISSFTGEGLEELINKIKSILSNKFKKLPFSI 373 ST +E++ +S+ TG+ L+++ + +K + N+ +++ S+ Sbjct: 299 KKNSTSAKEFEREIRAEFQYLDYAPILFVSAKTGQRLDQIPSMVKEVYDNQNQRIQSSV 357 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 48/87 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN + + +AIV D PG TRD + G+ + DT GI Sbjct: 6 VAIVGQPNVGKSTLFNRIINQRLAIVEDKPGVTRDRNYAQAEWMGHKFDLIDTGGITWEG 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI 308 +E+E + + +E AD+I++L + Sbjct: 66 GKIEEEIRAQAEIAIEEADVIVMLTNV 92 >gi|21672838|ref|NP_660905.1| GTP-binding protein EngA [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|8134425|sp|O51881|DER_BUCAP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|2827027|gb|AAC38119.1| ORF453 hypothetical protein [Buchnera aphidicola] gi|21623492|gb|AAM68116.1| probable GPT-binding protein EngA [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 453 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 35/85 (41%), Positives = 48/85 (56%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280 IV++G +N GKS+LFN L+K A+V D PG TRD L E + I DTAGI Sbjct: 5 IVLIGRTNVGKSTLFNILSKTRNALVADYPGLTRDRNYGYCYLKENKKITIVDTAGINFK 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 +EK+ ++T ++ D IL L Sbjct: 65 SQKIEKQSHEQTLKAIKECDGILFL 89 Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 56/104 (53%), Gaps = 9/104 (8%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD--VLTIDLDLEGYLVKISDT 274 +N KI +G N GKS+L N+L K I ++ GTT D ++ I + + Y+ DT Sbjct: 185 KNSVKIACIGKPNVGKSTLINSLLMKKRMITSNKAGTTLDTVLVPIKYNYKNYI--FIDT 242 Query: 275 AGI---RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 AG+ + + +EK +T +E + L LL+ I++K +IS Sbjct: 243 AGMSKKKSKTNKIEKFCKIKTLQTIEKSHLTLLI--IDAKDQIS 284 >gi|332362231|gb|EGJ40031.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK1056] Length = 436 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 74/148 (50%), Gaps = 31/148 (20%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRE 279 K ++G N GKSSL NA+ +D I + + GTTRD + T+ D EG + DTAG+R+ Sbjct: 176 KFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTVFTDSEGQEFTMIDTAGMRK 235 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336 + + EK + R ++ +D++L++ +N+++ I Sbjct: 236 SGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEGI---------------------- 271 Query: 337 EEYDHLISSF---TGEGLEELINKIKSI 361 EYD I+ F G+G+ ++NK ++ Sbjct: 272 REYDKRIAGFAHEAGKGIVIVVNKWDTL 299 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 45/84 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS+LFN +A + ++IV D+ G TRD + I DT GI + D Sbjct: 6 IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATASWLNRKFSIIDTGGIDDVD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + + ++ AD+I+ + Sbjct: 66 APFMEQIKHQAEIAMDEADVIVFV 89 >gi|29347247|ref|NP_810750.1| putative GTP-binding protein [Bacteroides thetaiotaomicron VPI-5482] gi|29339146|gb|AAO76944.1| putative GTP-binding protein, putative GTPase [Bacteroides thetaiotaomicron VPI-5482] Length = 405 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 2/89 (2%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276 N I + G N+GKSSL NAL +D A+V+D PGTT D + +++ G DT G Sbjct: 10 NRLHIALFGKRNSGKSSLINALTGQDTALVSDTPGTTTDSVQKAMEIHGIGPCLFIDTPG 69 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL 305 + ++ + I+RT+ VE D+ LLL Sbjct: 70 FDDEGELGNRR-IERTWKAVEKTDIALLL 97 >gi|150390617|ref|YP_001320666.1| small GTP-binding protein [Alkaliphilus metalliredigens QYMF] gi|166920095|sp|A6TS39|DER_ALKMQ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|149950479|gb|ABR49007.1| small GTP-binding protein [Alkaliphilus metalliredigens QYMF] Length = 440 Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 37/89 (41%), Positives = 52/89 (58%), Gaps = 5/89 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRE 279 K+ I+G N GKSS+ N++ ++ IV+DI GTTRD + D E V I DTAG+R Sbjct: 178 KVAIIGKPNVGKSSIVNSILGENRVIVSDIAGTTRDAIDTPFNDGEDQYVLI-DTAGLRR 236 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLL 305 I +EK + R+ VE AD+ LL+ Sbjct: 237 KSKIKENIEKYSVIRSIAAVERADVCLLV 265 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 50/85 (58%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RET 280 + I+G N GKS+LFN + ++IV D PG TRD + +++ + + DT GI +T Sbjct: 6 VAIVGRPNVGKSTLFNKIIGHRISIVEDQPGVTRDRIYAEVEWLDHYFTLIDTGGIDADT 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 ++I+ + ++ L +E AD+ + + Sbjct: 66 EEIIPAQMREQAQLAIETADVTVFM 90 >gi|170740822|ref|YP_001769477.1| GTP-binding protein EngA [Methylobacterium sp. 4-46] gi|168195096|gb|ACA17043.1| small GTP-binding protein [Methylobacterium sp. 4-46] Length = 446 Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 ++ I+G NAGKS+L N + +D +V G TRD +++D + G +K+ DTAG+R Sbjct: 180 RVAIVGRPNAGKSTLINRMLGEDRLLVGPEAGITRDSISLDWEWRGRRIKLHDTAGMRRR 239 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305 DD +EK + V A+++++L Sbjct: 240 ARVDDKLEKLAVSDGLRAVRFAEVVVVL 267 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/60 (43%), Positives = 34/60 (56%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN L + +A+V D PG TRD + L I DTAG+ E D Sbjct: 6 VAIVGRPNVGKSTLFNRLVGRKLALVDDRPGVTRDRREGEARLGHLRFTIIDTAGLEEAD 65 >gi|15614201|ref|NP_242504.1| GTP-binding protein EngA [Bacillus halodurans C-125] gi|20137999|sp|Q9KCD4|DER_BACHD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|10174255|dbj|BAB05357.1| BH1638 [Bacillus halodurans C-125] Length = 437 Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I ++G N GKSSL NA+ ++ IV++IPGTTRD + + + DTAG+R+ Sbjct: 177 RISLIGRPNVGKSSLVNAMLGEERVIVSNIPGTTRDAIDTAFSRDDQEYVLIDTAGMRKR 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + EK + R+ +E +D++L++ Sbjct: 237 GKVYESTEKYSVLRSLKAIERSDVVLVV 264 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 51/94 (54%), Gaps = 2/94 (2%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS++FN + + VAIV D PG TRD + + + DT GI D Sbjct: 6 IAIVGRPNVGKSTIFNRIVGERVAIVEDRPGVTRDRIYSHGEWLNREFNVIDTGGIEIGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + + + + L ++ AD+I+ + +N ++ ++ Sbjct: 66 EPLLVQMRAQAELAIKEADVIIFI--VNGREGVT 97 >gi|332358244|gb|EGJ36072.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK355] Length = 436 Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 74/148 (50%), Gaps = 31/148 (20%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRE 279 K ++G N GKSSL NA+ +D I + + GTTRD + T+ D EG + DTAG+R+ Sbjct: 176 KFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTVFTDSEGQEFTMIDTAGMRK 235 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336 + + EK + R ++ +D++L++ +N+++ I Sbjct: 236 SGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEGI---------------------- 271 Query: 337 EEYDHLISSF---TGEGLEELINKIKSI 361 EYD I+ F G+G+ ++NK ++ Sbjct: 272 REYDKRIAGFAHEAGKGIVIVVNKWDTL 299 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS+LFN +A + ++IV D+ G TRD + + I DT GI + D Sbjct: 6 IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATANWLNRKFSIIDTGGIDDVD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + + ++ AD+I+ + Sbjct: 66 APFMEQIKHQAEIAMDEADVIVFV 89 >gi|325690931|gb|EGD32931.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK115] Length = 436 Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 74/148 (50%), Gaps = 31/148 (20%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRE 279 K ++G N GKSSL NA+ +D I + + GTTRD + T+ D EG + DTAG+R+ Sbjct: 176 KFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTVFTDSEGQEFTMIDTAGMRK 235 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336 + + EK + R ++ +D++L++ +N+++ I Sbjct: 236 SGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEGI---------------------- 271 Query: 337 EEYDHLISSF---TGEGLEELINKIKSI 361 EYD I+ F G+G+ ++NK ++ Sbjct: 272 REYDKRIAGFAHEAGKGIVIVVNKWDTL 299 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 45/84 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS+LFN +A + ++IV D+ G TRD + I DT GI + D Sbjct: 6 IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATASWLNRKFSIIDTGGIDDVD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + + ++ AD+I+ + Sbjct: 66 APFMEQIKHQAEIAMDEADVIVFV 89 >gi|319651358|ref|ZP_08005487.1| GTP-binding protein EngA [Bacillus sp. 2_A_57_CT2] gi|317396889|gb|EFV77598.1| GTP-binding protein EngA [Bacillus sp. 2_A_57_CT2] Length = 436 Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K ++G N GKSSL NA+ ++ IV++I GTTRD + + ++G I DTAG+R+ Sbjct: 177 KFSLIGRPNVGKSSLVNAMLGEERVIVSNIAGTTRDAIDSKVKVDGQEYVIIDTAGMRKK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + EK + R +E +D++L++ Sbjct: 237 GKVYETTEKYSVLRALRAIERSDVVLVV 264 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/94 (29%), Positives = 53/94 (56%), Gaps = 2/94 (2%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN + + ++IV DIPG TRD + + + I DT GI D Sbjct: 6 VAIVGRPNVGKSTIFNRIVGERISIVEDIPGVTRDRIYSSAEWLTHDFNIIDTGGIDIGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + ++ + + ++ AD+I+ L +N ++ ++ Sbjct: 66 EPFLEQIRLQAEIAIDEADVIIFL--VNGREGVT 97 >gi|184155357|ref|YP_001843697.1| GTP-binding protein EngA [Lactobacillus fermentum IFO 3956] gi|238692974|sp|B2GC35|DER_LACF3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|183226701|dbj|BAG27217.1| GTP-binding protein [Lactobacillus fermentum IFO 3956] Length = 437 Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 41/154 (26%), Positives = 73/154 (47%), Gaps = 17/154 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN +A + +AIV D PG TRD L + G + DT GI +D Sbjct: 6 VAIVGRPNVGKSTLFNRIAGERIAIVEDTPGVTRDRLYAHGEWLGKNFSMIDTGGIEMSD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333 + + ++ + +E AD+I+++ + + +I + N + K D Sbjct: 66 QPLLTQIRQQAEIAIEEADVIIMVVNVENGVTDADEQVAQILYRSNKPVVLAVNKVDNPE 125 Query: 334 TYTEEYD---------HLISSFTGEGLEELINKI 358 + YD + +SS G GL ++++ + Sbjct: 126 RRLDVYDFYRLGLGEPYPVSSVHGVGLGDMLDAV 159 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 50/85 (58%), Gaps = 4/85 (4%) Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDI 283 +G N GKSSL NA+ ++ IV+D+ GTTRD + +G + DTAGI++ + Sbjct: 180 IGRPNVGKSSLVNAILGENRVIVSDMAGTTRDAINTQFTAKDGREFTMVDTAGIKKKGKL 239 Query: 284 ---VEKEGIKRTFLEVENADLILLL 305 E+ + R+ ++++D++L++ Sbjct: 240 YENTERYALMRSMRAIDDSDVVLVV 264 >gi|167626610|ref|YP_001677110.1| GTP-binding protein EngA [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|189037148|sp|B0TZQ0|DER_FRAP2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|167596611|gb|ABZ86609.1| GTP-binding protein [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 465 Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 30/102 (29%), Positives = 61/102 (59%), Gaps = 5/102 (4%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R+G ++G N GKS+L N + +D +V D+PGTT D ++I + G+ I DTAG Sbjct: 181 RHGIHFSLIGRPNVGKSTLTNRMLGEDRVVVFDMPGTTIDSVSIPFERHGHKYTIVDTAG 240 Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 +R + +EK + +T ++++++++ + +++++ IS Sbjct: 241 VRRRGKVKQTLEKFSVIKTLQAIQDSNVVVAV--VDAREGIS 280 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 4/86 (4%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGIRE 279 + I+G +N GKS+LFN L A+V D G TRD D GYLV DT GI + Sbjct: 5 VAIVGRANVGKSTLFNVLTNSRDALVFDFEGVTRDRQYGQAKYDDLGYLV--VDTGGISD 62 Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305 D ++ K++ + ++ A+L+ + Sbjct: 63 QDAGFDEFMAKQSQMAIDEANLVFFV 88 >gi|237752638|ref|ZP_04583118.1| GTP-binding protein engA [Helicobacter winghamensis ATCC BAA-430] gi|229376127|gb|EEO26218.1| GTP-binding protein engA [Helicobacter winghamensis ATCC BAA-430] Length = 462 Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 1/84 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G NAGKSSLFN K+ +AI ++I GTTRDV + L+ + DT G+ + D Sbjct: 8 IAIVGRPNAGKSSLFNRFCKQRIAITSEIAGTTRDVKKARILLQDLPFLLFDTGGLDDKD 67 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + K + E+ADLIL L Sbjct: 68 ALFQSVS-KHSQRTGESADLILYL 90 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 39/110 (35%), Positives = 62/110 (56%), Gaps = 11/110 (10%) Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257 FL+N+ ++ + E+I G I+G N GKSSL NAL K++ ++V+++ GTT D Sbjct: 185 FLENE-----TEKTINELINIG----IIGRVNVGKSSLLNALLKEERSVVSNVAGTTIDP 235 Query: 258 LTIDLDLEGYLVKISDTAGIRETDDI--VEKEGIKRTFLEVENADLILLL 305 + ++ G V DTAGIR I +EK + RT +E D+ +L+ Sbjct: 236 VDEIGEINGRRVNFVDTAGIRRRGKIEGLEKFALNRTRTILERTDIAILV 285 >gi|149913922|ref|ZP_01902454.1| Small GTP-binding protein domain [Roseobacter sp. AzwK-3b] gi|149812206|gb|EDM72037.1| Small GTP-binding protein domain [Roseobacter sp. AzwK-3b] Length = 495 Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 82/168 (48%), Gaps = 23/168 (13%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 + + I+G N GKS+LFN L K +A+V D PG TRD+ + L + DTAG+ E Sbjct: 3 FTLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGEAKLGDLRFTVIDTAGLEE 62 Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS---------FPKNIDFIFIGTK- 328 TD+ ++ K T V+ AD+ L L I+++ ++ K D + +G Sbjct: 63 ATDESLQGRMRKLTERAVDMADVCLFL--IDARAGVTPTDEVLAEILRKRADRVILGANK 120 Query: 329 -------SDLYSTYTEEYDHLI--SSFTGEGLEELINKIKSILSNKFK 367 + +Y Y + S+ GEG+ EL + ++ I S++F+ Sbjct: 121 AEGSAADAGIYEAYGLGLGEPVRLSAEHGEGMNELYSLLQPI-SDEFE 167 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE- 279 ++ ++G NAGKS+L N + +D + G TRD +++ +D +G V+I DTAG+R+ Sbjct: 208 QVAVVGRPNAGKSTLINTILGEDRLLTGPEAGITRDAISLQIDWDGLPVRIFDTAGMRKK 267 Query: 280 --TDDIVEKEGIKRTFLEVENADLILLL 305 D VEK + V+ A+++++L Sbjct: 268 ARVQDKVEKLSVSDGLRAVKFAEVVVVL 295 >gi|327462002|gb|EGF08331.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK1057] Length = 436 Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 74/148 (50%), Gaps = 31/148 (20%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRE 279 K ++G N GKSSL NA+ +D I + + GTTRD + T+ D EG + DTAG+R+ Sbjct: 176 KFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTVFTDSEGQEFTMIDTAGMRK 235 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336 + + EK + R ++ +D++L++ +N+++ I Sbjct: 236 SGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEGI---------------------- 271 Query: 337 EEYDHLISSF---TGEGLEELINKIKSI 361 EYD I+ F G+G+ ++NK ++ Sbjct: 272 REYDKRIAGFAHEAGKGMIIVVNKWDTL 299 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 45/84 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS+LFN +A + ++IV D+ G TRD + I DT GI + D Sbjct: 6 IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATASWLNRKFSIIDTGGIDDVD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + + ++ AD+I+ + Sbjct: 66 APFMEQIKHQAEIAMDEADVIVFV 89 >gi|116629548|ref|YP_814720.1| GTP-binding protein EngA [Lactobacillus gasseri ATCC 33323] gi|116095130|gb|ABJ60282.1| Predicted GTPase [Lactobacillus gasseri ATCC 33323] Length = 427 Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 46/179 (25%), Positives = 84/179 (46%), Gaps = 29/179 (16%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 ++G N GKSSL NA+ + IV++I GTTRD + +G I DTAGIR + Sbjct: 179 VIGRPNVGKSSLVNAILGEQRVIVSNIEGTTRDAIDTTFTNDGQKYTIVDTAGIRRRGKV 238 Query: 284 ---VEKEGIKRTFLEVENADLILLLKEINS------KKEISFPKNI--DFIFIGTKSDLY 332 EK + R +E +D+ LL+ + ++ K + + I + K DL Sbjct: 239 YEKTEKYSVLRAISAIEESDITLLVLDASTGIREQDKHVAGYAHDAGRGVIIVVNKWDLP 298 Query: 333 STYT-----------EEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLPFSI 373 Y+ +E+ +L +S+ TG+ + +++ +K + N+ +++ S+ Sbjct: 299 KKYSTSMKDFEDTIRQEFQYLDYAPIVFVSAKTGQRVPDILKLVKEVHDNQTRRIKSSV 357 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 26/87 (29%), Positives = 48/87 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS++FN + VAIV D G TRD + + G+ + DT GI Sbjct: 6 VALVGRPNVGKSTIFNRIINSRVAIVEDKAGVTRDRIYARAEWMGHEFILIDTGGITLDS 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI 308 +E++ + + ++ AD+I++L ++ Sbjct: 66 GEIEEQIKAQAEIAIDEADVIVMLGDV 92 >gi|119505385|ref|ZP_01627459.1| predicted GTPase [marine gamma proteobacterium HTCC2080] gi|119458840|gb|EAW39941.1| predicted GTPase [marine gamma proteobacterium HTCC2080] Length = 472 Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 3/90 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE- 279 ++ ++G N GKS+L N L +D +V D PGTTRD + I + + DTAG+R Sbjct: 177 RVAVVGRPNVGKSTLVNRLLGEDRVVVFDKPGTTRDSVYIRYERHDQAYTLIDTAGVRRR 236 Query: 280 --TDDIVEKEGIKRTFLEVENADLILLLKE 307 ++VEK I +T + A +++LL + Sbjct: 237 KNVREVVEKFSIVKTLKAINEAHVVILLMD 266 Score = 40.8 bits (94), Expect = 0.44, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 45/84 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L + A+V ++ G TRD + + + DT GI + Sbjct: 5 IALVGRPNVGKSTLFNQLTRSRDALVANLSGLTRDRKYGEGKIGDAPFIVIDTGGISGEE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ ++ + ++ AD++LLL Sbjct: 65 LGIDAAMADQSRVAIDEADIVLLL 88 >gi|322386141|ref|ZP_08059775.1| ribosome-associated GTPase EngA [Streptococcus cristatus ATCC 51100] gi|321269833|gb|EFX52759.1| ribosome-associated GTPase EngA [Streptococcus cristatus ATCC 51100] Length = 436 Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 74/148 (50%), Gaps = 31/148 (20%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRE 279 K ++G N GKSSL NA+ +D I + + GTTRD + T+ D EG + DTAG+R+ Sbjct: 176 KFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTVFTDSEGQEFTMIDTAGMRK 235 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336 + + EK + R ++ +D++L++ +N+++ I Sbjct: 236 SGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEGI---------------------- 271 Query: 337 EEYDHLISSF---TGEGLEELINKIKSI 361 EYD I+ F G+G+ ++NK ++ Sbjct: 272 REYDKRIAGFAHEAGKGIVIVVNKWDTL 299 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS+LFN +A + ++IV D+ G TRD + D I DT GI + D Sbjct: 6 IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATADWLNRKFSIIDTGGIDDVD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + + ++ AD+I+ + Sbjct: 66 APFMEQIKHQAEIAMDEADVIVFV 89 >gi|328946827|gb|EGG40964.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK1087] Length = 436 Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 74/148 (50%), Gaps = 31/148 (20%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRE 279 K ++G N GKSSL NA+ +D I + + GTTRD + T+ D EG + DTAG+R+ Sbjct: 176 KFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTVFTDSEGQEFTMIDTAGMRK 235 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336 + + EK + R ++ +D++L++ +N+++ I Sbjct: 236 SGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEGI---------------------- 271 Query: 337 EEYDHLISSF---TGEGLEELINKIKSI 361 EYD I+ F G+G+ ++NK ++ Sbjct: 272 REYDKRIAGFAHEAGKGMIIVVNKWDTL 299 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS+LFN +A + ++IV D+ G TRD + + I DT GI + D Sbjct: 6 IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATANWLNRKFSIIDTGGIDDVD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + + ++ AD+I+ + Sbjct: 66 APFMEQIKHQAEIAMDEADVIVFV 89 >gi|262196911|ref|YP_003268120.1| ribosome-associated GTPase EngA [Haliangium ochraceum DSM 14365] gi|262080258|gb|ACY16227.1| ribosome-associated GTPase EngA [Haliangium ochraceum DSM 14365] Length = 518 Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 43/180 (23%), Positives = 80/180 (44%), Gaps = 28/180 (15%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ +LG NAGKSSL N L + ++V PGTT D + + G + DTAGIR Sbjct: 243 RVAMLGKPNAGKSSLVNRLVGSERSLVHHQPGTTMDPVDTPFEFAGRSYVLVDTAGIRRR 302 Query: 281 DDI---VEKEGIKRTFLEVENADLILL-----------------LKEINSKKEISFPKNI 320 + EK + ++E AD+++L L E + + + + Sbjct: 303 ARVEAETEKIAVSMAISQIERADIVVLVIDGKLGPSEQDARLAGLVEDSGRGLVVAVNKV 362 Query: 321 DFIF-IGTKSDLYSTYTEEYDH-------LISSFTGEGLEELINKIKSILSNKFKKLPFS 372 D + +G S + S ++ L+S+ G+G+ +L++ + + K++P + Sbjct: 363 DLLSGVGAGSKVKSALSDTLHFLSYAPMVLVSALRGDGVADLLSTVDRVALEHAKRVPTA 422 Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust. Identities = 32/87 (36%), Positives = 43/87 (49%), Gaps = 4/87 (4%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RET 280 I I+G N GKS+L+N L A+V D PG TRD G+ +++ DT G+ E Sbjct: 6 IAIVGRPNVGKSTLYNRLVGGRPALVHDTPGLTRDRRYGAFSYMGHRLRLVDTGGLDPEA 65 Query: 281 DDIVEKEGIKR---TFLEVENADLILL 304 V GI R L+ NA L +L Sbjct: 66 AKEVIGAGIHRQADAALQEANAVLFVL 92 >gi|323466656|gb|ADX70343.1| GTP-binding protein engA [Lactobacillus helveticus H10] Length = 435 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/179 (25%), Positives = 84/179 (46%), Gaps = 29/179 (16%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 ++G N GKSS+ N L +D IV + GTTRD + +G K+ DTAGIR + Sbjct: 179 VIGRPNVGKSSVVNKLLGEDRVIVANEEGTTRDAVDTPFTKDGVKFKVVDTAGIRRRGKV 238 Query: 284 ---VEKEGIKRTFLEVENADLILLLKEINS-----KKEI---SFPKNIDFIFIGTKSDL- 331 EK + R +E +D++LL+ + ++ K + + I + K DL Sbjct: 239 YEKTEKYSVLRAVAAIERSDVVLLVLDASTGIREQDKHVAGYAHEAGRGIIIVVNKWDLP 298 Query: 332 --YSTYTEEYDH---------------LISSFTGEGLEELINKIKSILSNKFKKLPFSI 373 ST +E++ +S+ TG+ L+++ + +K + N+ +++ S+ Sbjct: 299 KKNSTSAKEFEREIRAEFQYLDYAPILFVSAKTGQRLDQIPSMVKEVYDNQNQRIQSSV 357 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 48/87 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN + + +AIV D PG TRD + G+ + DT GI Sbjct: 6 VAIVGQPNVGKSTLFNRIINQRLAIVEDKPGVTRDRNYAQAEWMGHKFDLIDTGGITWEG 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI 308 +E+E + + +E AD+I++L + Sbjct: 66 GKIEEEIRAQAEIAIEEADVIVMLTNV 92 >gi|58040398|ref|YP_192362.1| GTP-binding protein EngA [Gluconobacter oxydans 621H] gi|58002812|gb|AAW61706.1| GTP-binding protein [Gluconobacter oxydans 621H] Length = 463 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/59 (47%), Positives = 37/59 (62%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +VI G N GKS+LFN L + AIV+D+PG TRD + L G V++ DTAG+ E Sbjct: 13 VVIAGRPNVGKSTLFNRLVGRRQAIVSDMPGVTRDRKEGEALLRGRRVRLIDTAGLEEA 71 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G NAGKS+L N L ++ I G TRD +T++L E +++ DTAG+R+ Sbjct: 198 RLAIIGRPNAGKSTLLNCLLGEERMITGPEAGLTRDSITVELHDEHGPIQLVDTAGMRKR 257 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +EK + + ++ A++++L+ Sbjct: 258 ARVEQHLEKMSVSASIEALKMAEVVVLV 285 >gi|312143875|ref|YP_003995321.1| ribosome-associated GTPase EngA [Halanaerobium sp. 'sapolanicus'] gi|311904526|gb|ADQ14967.1| ribosome-associated GTPase EngA [Halanaerobium sp. 'sapolanicus'] Length = 438 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 9/118 (7%) Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262 IS+ + + + E R I ++G N GKSSL N L ++ IV+D+PGTTRD + + Sbjct: 161 ISAELPEYEEDEDKREAINIAVIGKPNVGKSSLINHLVGENRVIVSDMPGTTRDAVDTLI 220 Query: 263 DLEGYLVKISDTAGIRETDDIVEKEGIK-----RTFLEVENADLILLLKEINSKKEIS 315 + + DTAG+R + KE I+ R V+ +D +L++ I++ K +S Sbjct: 221 EWKDIKFNFIDTAGLRRKSRV--KESIEYYSNLRALKSVDRSDAVLMM--IDATKGVS 274 Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust. Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 5/87 (5%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI--RE 279 + I+G N GKS+LFN L AIV P TRD + + + + DT GI R+ Sbjct: 6 VAIVGRPNVGKSTLFNRLVGGRRAIVEGEPNVTRDRIYGEAEWLDRTFNVIDTGGIVPRD 65 Query: 280 TDDIVEKEGIK-RTFLEVENADLILLL 305 +D+I K IK + L +E AD+IL + Sbjct: 66 SDEI--KNKIKYQAELAMEEADVILFV 90 >gi|254501747|ref|ZP_05113898.1| putative GTPase [Labrenzia alexandrii DFL-11] gi|222437818|gb|EEE44497.1| putative GTPase [Labrenzia alexandrii DFL-11] Length = 478 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 76/162 (46%), Gaps = 24/162 (14%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G + I+G N GKS+LFN L K +A+V D PG TRD + L I DTAG+ Sbjct: 5 GATVAIVGRPNVGKSTLFNRLVGKRLALVDDTPGVTRDRRPGEARLGDLRFTIIDTAGLE 64 Query: 279 ETDDIVEKEGIKRTFLE-VENADLILLLKEINSKKEISFPKNIDFIFIGTK--------- 328 + D + ++R E +E AD +L + I+++ ++ P + F + K Sbjct: 65 DADKASLEGRMRRQTEEAIETADAVLFV--IDARAGVT-PLDAHFAAVARKTTRPVILLA 121 Query: 329 ---------SDLYSTYTEEYDHLI--SSFTGEGLEELINKIK 359 S LY +++ I S+ GEGL +L + +K Sbjct: 122 NKAEGRAGVSGLYESFSLGLGEPIAVSAEHGEGLSDLYDALK 163 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 38/66 (57%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G NAGKS+L N + +D + G TRD +++D +K+ DTAGIR+ Sbjct: 207 RVAIVGRPNAGKSTLINQMVGEDRMLTGPEAGITRDSISVDWTWHDRHIKLFDTAGIRKK 266 Query: 281 DDIVEK 286 + EK Sbjct: 267 ARVQEK 272 >gi|187734830|ref|YP_001876942.1| small GTP-binding protein [Akkermansia muciniphila ATCC BAA-835] gi|238691864|sp|B2UMV5|DER_AKKM8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|187424882|gb|ACD04161.1| small GTP-binding protein [Akkermansia muciniphila ATCC BAA-835] Length = 464 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/86 (39%), Positives = 49/86 (56%), Gaps = 3/86 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI--RE 279 I I+G N GKS++FN +A + +AIV D PG TRD L+ + KI DT GI R Sbjct: 7 IAIVGRPNVGKSAIFNRMAGRRIAIVHDEPGVTRDRLSAPCKITDRACKIMDTGGIGARL 66 Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305 +D E+ + + ++ ADLIL + Sbjct: 67 SDGFAEQVEAE-ADIAIKTADLILFV 91 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 3/93 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 K+ ++G NAGKSSL NA+ + IV+++ GTTRD + + +G + DTAG+R Sbjct: 191 KVAVVGRPNAGKSSLVNAILRDRRTIVSNVAGTTRDAIDVPYLHDGQPYVLIDTAGMRPR 250 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINS 310 D VE R+ + AD+ LL+ +I + Sbjct: 251 SRRDTSVEVFSAMRSEKAIRRADICLLVIDIAA 283 >gi|325954552|ref|YP_004238212.1| GTP-binding protein engA [Weeksella virosa DSM 16922] gi|323437170|gb|ADX67634.1| GTP-binding protein engA [Weeksella virosa DSM 16922] Length = 435 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 51/172 (29%), Positives = 83/172 (48%), Gaps = 23/172 (13%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 + I+G N GKS+ FN L +K AIV D+ G TRD D G + DT G + + Sbjct: 5 VAIVGRPNVGKSTFFNRLVQKRQAIVDDVSGVTRDRHYGKSDWNGVEFTVIDTGGYVVGS 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE-----INSKKEISF----PKNIDFIFIG----- 326 +D E+E K+ L V+ A++IL + + + KE+S K F+ + Sbjct: 65 EDTFEEEIRKQVELAVDEANVILFMVDNQVGLTDMDKEVSHLLRKAKKKTFLVVNKVDTN 124 Query: 327 -TKSDLYSTYTEEYDHLIS------SFTGEGLEELINKIKSI-LSNKFKKLP 370 D Y YT +D + + S TG+ L+E+++ ++ +KF+ LP Sbjct: 125 KNLDDSYEFYTLGFDKIFTIAAISGSGTGDLLDEVVDSFETKEFEDKFEGLP 176 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I I+G NAGKS+L NAL ++ IVTD+ GTTRD + + G+ + DTAG+R+ Sbjct: 177 RIAIVGRPNAGKSTLINALLGEERNIVTDVAGTTRDSIETLYNKFGHKFVLVDTAGMRKK 236 Query: 281 DDIVEK---EGIKRTFLEVENADLILLL 305 + E + R +E D+ +L+ Sbjct: 237 GKVAEDLEFYSVMRAIRTIEECDVCVLV 264 >gi|295110181|emb|CBL24134.1| ribosome-associated GTPase EngA [Ruminococcus obeum A2-162] Length = 441 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 53/90 (58%), Gaps = 1/90 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFNALA + ++IV D PG TRD + D+ + DT GI ++ Sbjct: 6 VAIVGRPNVGKSTLFNALAGEMISIVKDTPGVTRDRIYADVTWLDKSFTLIDTGGIEPDS 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310 DI+ + ++ + ++ AD+I+ + ++ Sbjct: 66 GDIILSQMREQAQIAIDTADVIVFITDVQQ 95 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/83 (40%), Positives = 45/83 (54%), Gaps = 3/83 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI ++G N GKSSL N L +D IV+DI GTTRD + + + DTAG+R Sbjct: 179 KIAVVGKPNVGKSSLINKLLGEDRVIVSDIAGTTRDAVDAKVKWKDREYIFIDTAGLRRK 238 Query: 281 DDI---VEKEGIKRTFLEVENAD 300 I +E+ + RT VE AD Sbjct: 239 GKIKEELERYSVIRTVTAVERAD 261 >gi|259046866|ref|ZP_05737267.1| ribosome-associated GTPase EngA [Granulicatella adiacens ATCC 49175] gi|259036489|gb|EEW37744.1| ribosome-associated GTPase EngA [Granulicatella adiacens ATCC 49175] Length = 437 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 4/89 (4%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRE 279 K +G N GKSSL NA+ ++ IV+++ GTTRD + D EG + K+ DTAGIR+ Sbjct: 177 KFSFIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAIDTTFEDEEGTVFKMIDTAGIRK 236 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLL 305 + EK + R +E +D++ ++ Sbjct: 237 KGRVFESTEKYSVLRALRAIERSDIVCVV 265 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 48/87 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS++FN + + ++IV DI G TRD + + + G+ I DT GI TD Sbjct: 6 IAVVGRPNVGKSTIFNRIVGERISIVEDIAGVTRDRIYSEGEWLGHSFNIIDTGGIDITD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI 308 + + + +E AD+I+ L + Sbjct: 66 EPFMSNIRMQAEIAMEEADVIIFLTSV 92 >gi|49529777|emb|CAG67489.1| putative GTP-binding protein EngA [Acinetobacter sp. ADP1] Length = 478 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 50/85 (58%), Gaps = 3/85 (3%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 G ++ I+G N GKS+L N L ++ + D PGTTRD + I + +G + DTAG+ Sbjct: 184 TGLRLAIIGRPNVGKSTLVNRLLGEERVVAFDQPGTTRDSIYIPFERDGRQYTLIDTAGV 243 Query: 278 R---ETDDIVEKEGIKRTFLEVENA 299 R + D+++EK + +T +++A Sbjct: 244 RRKGKVDEMIEKFSVVKTLQAMKDA 268 Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust. Identities = 17/35 (48%), Positives = 22/35 (62%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 I ++G N GKS+LFN + K A+V D G TRD Sbjct: 14 IALIGRPNVGKSTLFNQITKSRDALVADFAGLTRD 48 >gi|307822499|ref|ZP_07652730.1| ribosome-associated GTPase EngA [Methylobacter tundripaludum SV96] gi|307736103|gb|EFO06949.1| ribosome-associated GTPase EngA [Methylobacter tundripaludum SV96] Length = 465 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 3/91 (3%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 +G I ++G N GKS+L N L ++ IV D PGTTRD + I + G + DTAG+ Sbjct: 174 SGIGIAVVGRPNVGKSTLVNRLLGEERVIVFDEPGTTRDSIYIPFERNGKKFTLIDTAGM 233 Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLL 305 R I +EK + ++ +E A++++ L Sbjct: 234 RRRSKIAETIEKFSVIKSLQAIEKANVVIYL 264 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 42/161 (26%), Positives = 73/161 (45%), Gaps = 23/161 (14%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L + A+V D G TRD + L + DT GI + Sbjct: 5 IALVGRPNVGKSTLFNYLTRSRDALVADFSGLTRDRQYGRVKLGDRPCLVVDTGGIADDA 64 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNI----------DFIFIGTK--- 328 + +E K+ + +E AD++ + +++++ +S + I + K Sbjct: 65 EGIESFARKQVQVALEEADIVFFM--VDAREGLSASDKVIADTLRKLQKPVILVTNKVDG 122 Query: 329 -------SDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362 SD YS E + +S G+G+ EL+ K+ +L Sbjct: 123 LDASTAASDFYSLALGEPVKIAASH-GKGIPELLEKVNQLL 162 >gi|282908791|ref|ZP_06316609.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus WW2703/97] gi|282327055|gb|EFB57350.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus WW2703/97] Length = 348 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSL NA+ +D IV+++ GTTRD + + +G + DTAG+R+ Sbjct: 89 RLSIIGRPNVGKSSLVNAILGEDRVIVSNVAGTTRDAIDTEYSYDGQDYVLIDTAGMRKK 148 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + EK + R +E ++++L++ Sbjct: 149 GKVYESTEKYSVLRALKAIERSNVVLVV 176 >gi|161349970|ref|YP_045311.2| GTP-binding protein EngA [Acinetobacter sp. ADP1] Length = 469 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 50/85 (58%), Gaps = 3/85 (3%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 G ++ I+G N GKS+L N L ++ + D PGTTRD + I + +G + DTAG+ Sbjct: 175 TGLRLAIIGRPNVGKSTLVNRLLGEERVVAFDQPGTTRDSIYIPFERDGRQYTLIDTAGV 234 Query: 278 R---ETDDIVEKEGIKRTFLEVENA 299 R + D+++EK + +T +++A Sbjct: 235 RRKGKVDEMIEKFSVVKTLQAMKDA 259 Score = 38.1 bits (87), Expect = 2.7, Method: Compositional matrix adjust. Identities = 17/35 (48%), Positives = 22/35 (62%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 I ++G N GKS+LFN + K A+V D G TRD Sbjct: 5 IALIGRPNVGKSTLFNQITKSRDALVADFAGLTRD 39 >gi|312890129|ref|ZP_07749672.1| ribosome-associated GTPase EngA [Mucilaginibacter paludis DSM 18603] gi|311297406|gb|EFQ74532.1| ribosome-associated GTPase EngA [Mucilaginibacter paludis DSM 18603] Length = 433 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K I G N GKSS+ N L D IVT I GTTRD + I + G+ + DTAG+R+ Sbjct: 175 KYTIAGRPNVGKSSIINTLLGHDRNIVTPIAGTTRDSIHIHYNQFGHDFMLIDTAGMRKK 234 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E + RT +E +D+++L+ Sbjct: 235 TKVKENIEFYSVMRTIKAIEESDVVILM 262 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 1/90 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 + I+G N GKS+LFN L + AIV D G TRD + G+ + DT G + + Sbjct: 5 VAIVGRPNVGKSTLFNRLIEARKAIVDDFSGVTRDRHYGVSEWTGHDFTVIDTGGYVANS 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310 DD+ E ++ + +E A +IL + ++ + Sbjct: 65 DDVFEAAIREQVIIAIEEASVILFMVDVTT 94 >gi|304414053|ref|ZP_07395421.1| GTP-binding protein [Candidatus Regiella insecticola LSR1] gi|304283267|gb|EFL91663.1| GTP-binding protein [Candidatus Regiella insecticola LSR1] Length = 491 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 53/88 (60%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+L N + ++ IV D+PGTTRD + I + + DTAG+R+ Sbjct: 206 KLAIVGRPNVGKSTLTNRILGEERVIVYDLPGTTRDSIYIPMTRNERQYILIDTAGVRKR 265 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + VEK + +T +E+++++LL+ Sbjct: 266 GKVTQTVEKFSVIKTLKAIEDSNVVLLV 293 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V+D PG TRD + E + + DT G+ T+ Sbjct: 5 VALVGRPNVGKSTLFNHLTRTRSALVSDFPGLTRDRQYGRAEFESHEFIVIDTGGVDGTE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 VE + L +E AD++L + Sbjct: 65 QGVETLMASQALLAIEEADIVLFI 88 >gi|295706430|ref|YP_003599505.1| GTP-binding protein EngA [Bacillus megaterium DSM 319] gi|294804089|gb|ADF41155.1| GTP-binding protein EngA [Bacillus megaterium DSM 319] Length = 436 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K ++G N GKSSL NAL +D IV+D+ GTTRD + E + DTAG+R+ Sbjct: 177 KFSLIGRPNVGKSSLVNALLGEDRVIVSDLAGTTRDAIDTKFTKEDQEYVVIDTAGMRKR 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + EK + R +E +D++L++ Sbjct: 237 GKVYESTEKYSVLRALKAIERSDVVLVV 264 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS++FN + + V+IV DIPG TRD + + I DT GI D Sbjct: 6 IAIVGRPNVGKSTIFNRIVGERVSIVEDIPGVTRDRIYSSGEWLNVDFNIIDTGGIDIGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + ++ ++ + ++ AD+I+ L Sbjct: 66 EPFLEQIKQQAEIAIDEADVIIFL 89 >gi|217077884|ref|YP_002335602.1| GTP-binding protein EngA [Thermosipho africanus TCF52B] gi|226741195|sp|B7IE34|DER_THEAB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|217037739|gb|ACJ76261.1| GTP-binding protein EngA [Thermosipho africanus TCF52B] Length = 439 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 51/89 (57%), Gaps = 4/89 (4%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ +G NAGKS+LFN++ K+ +VT IPGTTRD + + + G DTAG+R Sbjct: 183 RVSFIGRPNAGKSTLFNSILNKERVLVTPIPGTTRDSVDELVTINGRKYLFVDTAGLRRK 242 Query: 281 DDIVEKE----GIKRTFLEVENADLILLL 305 + K R+ +EN+D++++L Sbjct: 243 SKVDYKSLDMYSNVRSIKSIENSDVVVIL 271 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 77/166 (46%), Gaps = 25/166 (15%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET- 280 ++I+G SN GKS+LFN L +IV D G TRD ++ + I DT GI E Sbjct: 4 VLIVGKSNVGKSTLFNKLIGYKKSIVDDKEGVTRDAVSGRVSYYSKTFNIVDTGGIFENP 63 Query: 281 -DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS----------FPKNIDFIFIGTKS 329 DDI+ K T + ADLIL + I++K I+ N D I + KS Sbjct: 64 EDDIINKSK-DLTLKMLNEADLILFV--IDAKNGITSEDYYLADIIRKSNNDVILVSNKS 120 Query: 330 --------DLYSTYTEEYDH--LISSFTGEGLEELINKIKSILSNK 365 +L Y + +S+ G+ ++ LI +I ++L +K Sbjct: 121 ESERRVQNNLPDIYKLGFGDPIFVSAEQGKNIDTLIERIVNVLESK 166 >gi|113954844|ref|YP_729899.1| ferrous iron transporter B [Synechococcus sp. CC9311] gi|113882195|gb|ABI47153.1| ferrous iron transport protein B [Synechococcus sp. CC9311] Length = 613 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 3/92 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +IV +G N GKS+ FN + K + A V + PG T D + +LD G + D GI + Sbjct: 18 RIVFIGQPNTGKSTFFNTVTKSN-AGVANWPGLTVDFMQANLDYNGKTYEFVDLPGIYDL 76 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKK 312 + E E + + FLE N DLI+ + IN+ + Sbjct: 77 EGFTEDELVVQKFLENYNFDLIVCV--INASQ 106 >gi|58584843|ref|YP_198416.1| GTP-binding protein EngA [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58419159|gb|AAW71174.1| Predicted GTPase [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 470 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/100 (33%), Positives = 54/100 (54%), Gaps = 10/100 (10%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 N ++ I+G N GKS+ N+L ++ I + PGTTRD + I + G L+ + DTAGI Sbjct: 203 NRLRVAIIGRPNVGKSTFLNSLLSENRLITSSEPGTTRDSVDITYNHNGKLITLIDTAGI 262 Query: 278 RETDDIVEK----------EGIKRTFLEVENADLILLLKE 307 R ++++ E IKR+ + V D +L +K+ Sbjct: 263 RRRANLIDNLELKFVKKSMESIKRSHVVVLMLDSLLGIKQ 302 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 81/162 (50%), Gaps = 25/162 (15%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD----VLTIDLDLEGYLVKISDTAG 276 KI I+G NAGKS+LFN + + A+V++IPG TRD V I DLE +KI DT G Sbjct: 3 KIAIVGLPNAGKSTLFNRILGRKAAVVSNIPGITRDRQEGVGRIS-DLE---LKIIDTGG 58 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL--KEINSKKEISFPK------NIDFIFIGTK 328 + + + +++ + +AD+I L ++ +++ F K N I I K Sbjct: 59 WNDQTNFFL-QIVEQIEFSLFSADIIFFLVDAKVQNEQNKEFAKWLKRRTNKSVILIANK 117 Query: 329 SDLYST----YTEEYDHL----ISSFTGEGLEELINKIKSIL 362 + Y + Y + +D + IS+ G+ +L N + ++ Sbjct: 118 CESYKSENIDYLQFFDFIGPVYISAEHNLGMVDLYNALAGVI 159 >gi|34762556|ref|ZP_00143552.1| GTP-binding protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887777|gb|EAA24850.1| GTP-binding protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 440 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ ++G NAGKSSL N L+ ++ IV+DI GTTRD + ++ + I DTAGIR Sbjct: 178 KLAVIGKPNAGKSSLVNKLSGEERTIVSDIAGTTRDAIDTLIEYKDNKYMIIDTAGIRRK 237 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E + R ++ AD+ +L+ Sbjct: 238 SKVEESLEYYSVLRALKAIKRADVCILM 265 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 45/143 (31%), Positives = 69/143 (48%), Gaps = 13/143 (9%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFN L +AIV D+PG TRD L D + I DT G+ Sbjct: 5 VAIVGRPNVGKSTLFNNLVGDKIAIVDDLPGVTRDRLYRDTEWSSSEFVIVDTGGLEPRN 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISF---PKNIDFIFIGTKSDLY 332 +D + + ++ + + AD+IL + + S +EI++ KN I K D Sbjct: 65 NDFLMAKIKEQAEVAMNEADVILFVVDGKSGLNPLDEEIAYILRKKNKPVILCVNKID-- 122 Query: 333 STYTEEYDHLISSFTGEGLEELI 355 + E+ D + F G G E L+ Sbjct: 123 -NFFEQQDD-VYDFYGLGFEYLV 143 >gi|326794518|ref|YP_004312338.1| GTP-binding protein engA [Marinomonas mediterranea MMB-1] gi|326545282|gb|ADZ90502.1| GTP-binding protein engA [Marinomonas mediterranea MMB-1] Length = 445 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 3/90 (3%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G +I ++G N GKS+L N + +D +V D+PGTTRD + I + DTAG+R Sbjct: 179 GIRIGVVGRPNVGKSTLVNRMLGEDRVVVYDMPGTTRDSVYIPYQRHDKEYTLIDTAGVR 238 Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLL 305 + VEK I +T +++A++++ + Sbjct: 239 RRKHVKEAVEKFSIVKTLQAIQDANVVICV 268 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 45/84 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L K A+V D PG TRD D L + + DT GI + Sbjct: 5 IALVGRPNVGKSTLFNRLTKSRDALVADYPGLTRDRKYGDGKLGEHDFIVIDTGGITGDE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++++ ++ +E AD +L L Sbjct: 65 QGIDEKMASQSLQAIEEADAVLFL 88 >gi|294501083|ref|YP_003564783.1| GTP-binding protein EngA [Bacillus megaterium QM B1551] gi|294351020|gb|ADE71349.1| GTP-binding protein EngA [Bacillus megaterium QM B1551] Length = 436 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/116 (31%), Positives = 61/116 (52%), Gaps = 6/116 (5%) Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252 L D+L ++ + H + K + + K ++G N GKSSL NAL +D IV+D+ G Sbjct: 152 LGDLL---DEAAKHFPKEKDEDYGEDVIKFSLIGRPNVGKSSLVNALLGEDRVIVSDLAG 208 Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305 TTRD + E + DTAG+R+ + EK + R +E +D++L++ Sbjct: 209 TTRDAIDTKFTKEDQEYVVIDTAGMRKRGKVYESTEKYSVLRALKAIERSDVVLVV 264 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS++FN + + V+IV DIPG TRD + + I DT GI D Sbjct: 6 IAIVGRPNVGKSTIFNRIVGERVSIVEDIPGVTRDRIYSSGEWLNVDFNIIDTGGIDIGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + ++ ++ + ++ AD+I+ L Sbjct: 66 EPFLEQIKQQAEIAIDEADVIIFL 89 >gi|238809602|dbj|BAH69392.1| hypothetical protein [Mycoplasma fermentans PG18] Length = 290 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 50/88 (56%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 I+G N GKSSL N + K DVAIVT++P TTRD + + + + + DT GI + ++ Sbjct: 9 IIGRPNVGKSSLINQIVKYDVAIVTNVPQTTRDQIVGVYNEDDFQLVFVDTPGIHKPLNL 68 Query: 284 VEKEGIKRTFLEVENADLILLLKEINSK 311 + + K F ++ D ++ L +N K Sbjct: 69 LGEALNKSAFESTKDVDCLIFLSPVNEK 96 >gi|315038199|ref|YP_004031767.1| GTP-binding protein EngA [Lactobacillus amylovorus GRL 1112] gi|325956651|ref|YP_004292063.1| GTP-binding protein Der [Lactobacillus acidophilus 30SC] gi|312276332|gb|ADQ58972.1| GTP-binding protein EngA [Lactobacillus amylovorus GRL 1112] gi|325333216|gb|ADZ07124.1| GTP-binding protein Der [Lactobacillus acidophilus 30SC] gi|327183476|gb|AEA31923.1| GTP-binding protein Der [Lactobacillus amylovorus GRL 1118] Length = 435 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/179 (25%), Positives = 84/179 (46%), Gaps = 29/179 (16%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 ++G N GKSS+ N L +D IV + GTTRD + +G K+ DTAGIR + Sbjct: 179 VIGRPNVGKSSIVNKLLGEDRVIVANEEGTTRDAVDTPFTKDGVKFKVVDTAGIRRRGKV 238 Query: 284 ---VEKEGIKRTFLEVENADLILLLKEINS-----KKEI---SFPKNIDFIFIGTKSDL- 331 EK + R +E +D++LL+ + ++ K + + I + K DL Sbjct: 239 YEKTEKYSVLRAMSAIERSDVVLLVLDASTGIREQDKHVAGYAHEAGRGIIIVVNKWDLP 298 Query: 332 --YSTYTEEYDH---------------LISSFTGEGLEELINKIKSILSNKFKKLPFSI 373 ST +E++ +S+ TG+ L+++ + +K + N+ +++ S+ Sbjct: 299 KKNSTSAKEFEREIKEEFQYLDYAPILFVSAKTGQRLDQIPSMVKEVYDNQNQRIQSSV 357 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 48/87 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN + + +AIV D PG TRD + G+ + DT GI Sbjct: 6 VAIVGRPNVGKSTLFNRIINQRLAIVEDKPGVTRDRNYAQAEWMGHKFDLIDTGGITWEG 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI 308 +E+E + + +E AD+I++L + Sbjct: 66 GKIEEEIRAQAEIAIEEADVIVMLTSV 92 >gi|256545276|ref|ZP_05472641.1| GTPase [Anaerococcus vaginalis ATCC 51170] gi|256399103|gb|EEU12715.1| GTPase [Anaerococcus vaginalis ATCC 51170] Length = 380 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/121 (38%), Positives = 68/121 (56%), Gaps = 15/121 (12%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIR 278 + +V+LG +N+GKSS N + +DV+IV+ GTT D + +++ + V DTAG Sbjct: 9 FSLVLLGKTNSGKSSFLNYITDQDVSIVSSQKGTTTDPIKKSMEIHDFGPVLFFDTAGFD 68 Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL----KEINS----KKEISFPKNIDFIFIGTKSD 330 + ++ EK I++T +E ADLIL E+N KKE KNI IFI +K D Sbjct: 69 DDTNLYEKR-IEKTKKTIEKADLILYFLSMEDELNDIFKLKKEY---KNI--IFIASKQD 122 Query: 331 L 331 L Sbjct: 123 L 123 >gi|153812950|ref|ZP_01965618.1| hypothetical protein RUMOBE_03357 [Ruminococcus obeum ATCC 29174] gi|149830897|gb|EDM85987.1| hypothetical protein RUMOBE_03357 [Ruminococcus obeum ATCC 29174] Length = 441 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 53/90 (58%), Gaps = 1/90 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFNALA + ++IV D PG TRD + D+ + DT GI ++ Sbjct: 6 VAIVGRPNVGKSTLFNALAGEMISIVKDTPGVTRDRIYADVTWLDKSFTLIDTGGIEPDS 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310 DI+ + ++ + ++ AD+I+ + ++ Sbjct: 66 GDIILSQMREQAQIAIDTADVIVFITDVQQ 95 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/83 (39%), Positives = 45/83 (54%), Gaps = 3/83 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ ++G N GKSSL N L +D IV+DI GTTRD + + + DTAG+R Sbjct: 179 KVAVVGKPNVGKSSLINKLLGEDRVIVSDIAGTTRDAVDAKVKWKDREYIFIDTAGLRRK 238 Query: 281 DDI---VEKEGIKRTFLEVENAD 300 I +E+ + RT VE AD Sbjct: 239 GKIKEEIERYSVIRTVTAVERAD 261 >gi|299538553|ref|ZP_07051836.1| GTP-binding protein EngA [Lysinibacillus fusiformis ZC1] gi|298726140|gb|EFI66732.1| GTP-binding protein EngA [Lysinibacillus fusiformis ZC1] Length = 436 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K ++G N GKSSL NA ++ IV++I GTTRD + +G I DTAG+R+ Sbjct: 177 KFSLIGRPNVGKSSLVNAFLGQERVIVSNIAGTTRDAIDTPYAYDGQEYVIIDTAGMRKK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 I EK + R +E +D++L++ Sbjct: 237 GKIYETTEKYSVLRALRAIERSDVVLVV 264 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN + + V+IV DIPG TRD + + + I DT GI D Sbjct: 6 VAIVGRPNVGKSTIFNRIVGERVSIVEDIPGVTRDRIYSSAEWLTHDFNIIDTGGIEIGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + ++ ++ + ++ AD+I+ + Sbjct: 66 EPFLEQIRQQAEIAIDEADVIIFM 89 >gi|75676210|ref|YP_318631.1| GTP-binding protein EngA [Nitrobacter winogradskyi Nb-255] gi|123613178|sp|Q3SR12|DER_NITWN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|74421080|gb|ABA05279.1| Small GTP-binding protein [Nitrobacter winogradskyi Nb-255] Length = 455 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/169 (26%), Positives = 80/169 (47%), Gaps = 29/169 (17%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G NAGKS++ N L ++ + + GTTRD ++++L+ +G +I DTAG+R Sbjct: 185 RVAIVGRPNAGKSTVINYLLSEERLLTSPEAGTTRDSISVELNWKGRDFRIFDTAGLRRR 244 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI--------FIGTKS 329 I +EK + T V A+ ++L+ + ++ E + D I K Sbjct: 245 SRIEAKLEKLSVADTLRAVRFAEAVVLMMDAQNRFEEQDLRIADLIEREGRALVIAVNKW 304 Query: 330 DLY-------STYTEEYDHL-----------ISSFTGEGLEELINKIKS 360 DL ++ + DH IS TGEG++ L+ I++ Sbjct: 305 DLMKGGSARIASLRNDVDHWLPQIRGAPVVAISGLTGEGIDRLMIAIQT 353 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 33/60 (55%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 + I I+G N GKS+LFN L + +A+V D PG TRD L + DTAG+ E Sbjct: 3 FTIAIIGRPNVGKSTLFNRLVGQKLALVDDEPGVTRDRREGQARLGDLDFTVIDTAGLDE 62 >gi|306832031|ref|ZP_07465186.1| ribosome-associated GTPase EngA [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304425957|gb|EFM29074.1| ribosome-associated GTPase EngA [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 436 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 74/148 (50%), Gaps = 31/148 (20%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRE 279 K ++G N GKSSL NA+ ++ I + I GTTRD + + D EG + DTAG+R+ Sbjct: 176 KFSLIGRPNVGKSSLINAILGEERVIASPIAGTTRDAIDTNFTDSEGQEYTMIDTAGMRK 235 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336 + + EK + R+ ++ +D++L++ IN+++ I Sbjct: 236 SGKVYENTEKYSVMRSMRAIDRSDIVLMV--INAEEGI---------------------- 271 Query: 337 EEYDHLISSF---TGEGLEELINKIKSI 361 EYD I+ F G+G+ ++NK +I Sbjct: 272 REYDKRIAGFAHEAGKGIIIVVNKWDTI 299 Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 45/84 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN +A + ++IV D+ G TRD + + + DT GI + D Sbjct: 6 VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTTGEWLNRKFSLIDTGGIDDVD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + + + AD+I+ + Sbjct: 66 APFMEQIKHQADIAMTEADVIVFV 89 >gi|289706512|ref|ZP_06502865.1| ribosome-associated GTPase EngA [Micrococcus luteus SK58] gi|289556770|gb|EFD50108.1| ribosome-associated GTPase EngA [Micrococcus luteus SK58] Length = 512 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/67 (46%), Positives = 41/67 (61%), Gaps = 1/67 (1%) Query: 213 GEIIRNG-YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 G + R G +I ++G N GKSSL N LA D +V D+ GTTRD + ++L G L + Sbjct: 242 GLVPRGGPRRIALVGRPNVGKSSLLNKLAGSDRVVVDDLAGTTRDPVDELVELGGRLWRF 301 Query: 272 SDTAGIR 278 DTAGIR Sbjct: 302 VDTAGIR 308 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 5/74 (6%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+L N + + A+V D+PG TRD ++ D + G + DT G Sbjct: 77 LAIVGRPNVGKSTLVNRIIGRREAVVEDVPGVTRDRVSYDAEWNGREFTVVDTGGWEH-- 134 Query: 282 DIVEKEGIKRTFLE 295 + +GI R E Sbjct: 135 ---DAKGIHRRVAE 145 >gi|242255880|gb|ACS88924.1| GTPase [Helicobacter pylori] Length = 170 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/82 (40%), Positives = 48/82 (58%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ + I +D GTTRD+ + L + V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERIVITSDFAGTTRDINKRKIALNSHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++ KE + +DLIL Sbjct: 69 ALLSKEIKALNLKAAQMSDLIL 90 >gi|172035176|ref|YP_001801677.1| GTP-binding protein EngA [Cyanothece sp. ATCC 51142] gi|226706247|sp|B1X0B0|DER_CYAA5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|171696630|gb|ACB49611.1| GTP-binding protein [Cyanothece sp. ATCC 51142] Length = 452 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/92 (36%), Positives = 49/92 (53%), Gaps = 3/92 (3%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R + I+G N GKSSL NA + AIV+ I GTTRD + ++ ++ DTAG Sbjct: 174 REEINVSIIGRPNVGKSSLLNAFLGEQRAIVSPISGTTRDAIDTVVERGDNTYRLIDTAG 233 Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLL 305 IR ++ E I R F + AD++LL+ Sbjct: 234 IRRKKNVNYGAEFFSINRAFKAIRRADVVLLV 265 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 33/66 (50%), Gaps = 10/66 (15%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-----VLTIDLDLEGYLVKISDTAG 276 + I+G N GKS+L N LAK AIV D PG TRD D D + + DT G Sbjct: 6 VAIIGRPNVGKSTLVNRLAKDRQAIVHDQPGITRDRTYRPAFWCDRDFQ-----VVDTGG 60 Query: 277 IRETDD 282 + DD Sbjct: 61 LVFDDD 66 >gi|315223115|ref|ZP_07864983.1| ribosome-associated GTPase EngA [Streptococcus anginosus F0211] gi|315187804|gb|EFU21551.1| ribosome-associated GTPase EngA [Streptococcus anginosus F0211] Length = 436 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 74/148 (50%), Gaps = 31/148 (20%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRE 279 K ++G N GKSSL NA+ +D I + + GTTRD + T+ D EG + DTAG+R+ Sbjct: 176 KFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTVFTDNEGQEFTMIDTAGMRK 235 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336 + + EK + R ++ +D++L++ +N+++ I Sbjct: 236 SGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEGI---------------------- 271 Query: 337 EEYDHLISSF---TGEGLEELINKIKSI 361 EYD I+ F G+G+ ++NK ++ Sbjct: 272 REYDKRIAGFAHEAGKGIIIVVNKWDTL 299 Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 45/84 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS+ FN +A + ++IV D+ G TRD + + + DT GI + D Sbjct: 6 IAIVGRPNVGKSTFFNRIAGERISIVEDVEGVTRDRIYATAEWLNRKFSMIDTGGIDDVD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + + ++ AD+I+ + Sbjct: 66 APFMEQIKHQAEIAMDEADIIVFV 89 >gi|288906012|ref|YP_003431234.1| GTP-binding protein [Streptococcus gallolyticus UCN34] gi|288732738|emb|CBI14312.1| putative GTP-binding protein [Streptococcus gallolyticus UCN34] Length = 436 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 74/148 (50%), Gaps = 31/148 (20%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRE 279 K ++G N GKSSL NA+ ++ I + I GTTRD + + D EG + DTAG+R+ Sbjct: 176 KFSLIGRPNVGKSSLINAILGEERVIASPIAGTTRDAIDTNFTDSEGQEYTMIDTAGMRK 235 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336 + + EK + R+ ++ +D++L++ IN+++ I Sbjct: 236 SGKVYENTEKYSVMRSMRAIDRSDIVLMV--INAEEGI---------------------- 271 Query: 337 EEYDHLISSF---TGEGLEELINKIKSI 361 EYD I+ F G+G+ ++NK +I Sbjct: 272 REYDKRIAGFAHEAGKGIIIVVNKWDTI 299 Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 45/84 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN +A + ++IV D+ G TRD + + + DT GI + D Sbjct: 6 VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTTGEWLNRKFSLIDTGGIDDVD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + + + AD+I+ + Sbjct: 66 APFMEQIKHQADIAMTEADVIVFV 89 >gi|325978979|ref|YP_004288695.1| GTP-binding protein EngA [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325178907|emb|CBZ48951.1| GTP-binding protein EngA [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 436 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 74/148 (50%), Gaps = 31/148 (20%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRE 279 K ++G N GKSSL NA+ ++ I + I GTTRD + + D EG + DTAG+R+ Sbjct: 176 KFSLIGRPNVGKSSLINAILGEERVIASPIAGTTRDAIDTNFTDSEGQEYTMIDTAGMRK 235 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336 + + EK + R+ ++ +D++L++ IN+++ I Sbjct: 236 SGKVYENTEKYSVMRSMRAIDRSDIVLMV--INAEEGI---------------------- 271 Query: 337 EEYDHLISSF---TGEGLEELINKIKSI 361 EYD I+ F G+G+ ++NK +I Sbjct: 272 REYDKRIAGFAHEAGKGIIIVVNKWDTI 299 Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 45/84 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN +A + ++IV D+ G TRD + + + DT GI + D Sbjct: 6 VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTTGEWLNRKFSLIDTGGIDDVD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + + + AD+I+ + Sbjct: 66 APFMEQIKHQADIAMTEADVIVFV 89 >gi|319938676|ref|ZP_08013040.1| GTP-binding protein engA [Streptococcus anginosus 1_2_62CV] gi|319811726|gb|EFW07992.1| GTP-binding protein engA [Streptococcus anginosus 1_2_62CV] Length = 436 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 74/148 (50%), Gaps = 31/148 (20%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRE 279 K ++G N GKSSL NA+ +D I + + GTTRD + T+ D EG + DTAG+R+ Sbjct: 176 KFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTVFTDSEGQEFTMIDTAGMRK 235 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336 + + EK + R ++ +D++L++ +N+++ I Sbjct: 236 SGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEGI---------------------- 271 Query: 337 EEYDHLISSF---TGEGLEELINKIKSI 361 EYD I+ F G+G+ ++NK ++ Sbjct: 272 REYDKRIAGFAHEAGKGIIIVVNKWDTL 299 Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS+LFN +A + ++IV D+ G TRD + D + DT GI + D Sbjct: 6 IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATADWLNRKFSMIDTGGIDDVD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + + +E AD+I+ + Sbjct: 66 APFMEQIKHQAEIAMEEADVIVFV 89 >gi|294784590|ref|ZP_06749879.1| ribosome-associated GTPase EngA [Fusobacterium sp. 3_1_27] gi|294487806|gb|EFG35165.1| ribosome-associated GTPase EngA [Fusobacterium sp. 3_1_27] Length = 440 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ ++G NAGKSSL N L+ ++ IV+DI GTTRD + ++ + I DTAGIR Sbjct: 178 KLAVIGKPNAGKSSLVNKLSGEERTIVSDIAGTTRDAIDTLIEYKDNKYMIIDTAGIRRK 237 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E + R ++ AD+ +L+ Sbjct: 238 SKVEESLEYYSVLRALKAIKRADVCILM 265 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 46/143 (32%), Positives = 70/143 (48%), Gaps = 13/143 (9%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFN L +AIV D+PG TRD L D + G I DT G+ Sbjct: 5 VAIVGRPNVGKSTLFNNLVGDKIAIVDDLPGVTRDRLYRDTEWSGSEFVIVDTGGLEPRN 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISF---PKNIDFIFIGTKSDLY 332 +D + + ++ + + AD+IL + + S +EI++ KN I K D Sbjct: 65 NDFLMAKIKEQAEVAMNEADVILFVVDGKSGLNPLDEEIAYILRKKNKPVILCVNKID-- 122 Query: 333 STYTEEYDHLISSFTGEGLEELI 355 + E+ D + F G G E L+ Sbjct: 123 -NFFEQQDD-VYDFYGLGFEYLV 143 >gi|237741193|ref|ZP_04571674.1| GTP-binding protein [Fusobacterium sp. 4_1_13] gi|229430725|gb|EEO40937.1| GTP-binding protein [Fusobacterium sp. 4_1_13] Length = 440 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ ++G NAGKSSL N L+ ++ IV+DI GTTRD + ++ + I DTAGIR Sbjct: 178 KLAVIGKPNAGKSSLVNKLSGEERTIVSDIAGTTRDAIDTLIEYKDNKYMIIDTAGIRRK 237 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E + R ++ AD+ +L+ Sbjct: 238 SKVEESLEYYSVLRALKAIKRADVCILM 265 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 46/143 (32%), Positives = 70/143 (48%), Gaps = 13/143 (9%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFN L +AIV D+PG TRD L D + G I DT G+ Sbjct: 5 VAIVGRPNVGKSTLFNNLVGDKIAIVDDLPGVTRDRLYRDTEWSGSEFVIVDTGGLEPRN 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISF---PKNIDFIFIGTKSDLY 332 +D + + ++ + + AD+IL + + S +EI++ KN I K D Sbjct: 65 NDFLMAKIKEQAEVAMNEADVILFVVDGKSGLNPLDEEIAYILRKKNKPVILCVNKID-- 122 Query: 333 STYTEEYDHLISSFTGEGLEELI 355 + E+ D + F G G E L+ Sbjct: 123 -NFFEQQDD-VYDFYGLGFEYLV 143 >gi|301059965|ref|ZP_07200844.1| ribosome-associated GTPase EngA [delta proteobacterium NaphS2] gi|300445932|gb|EFK09818.1| ribosome-associated GTPase EngA [delta proteobacterium NaphS2] Length = 435 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/103 (34%), Positives = 52/103 (50%), Gaps = 7/103 (6%) Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 + K +LND++ +S G+ E IR + +LG N GKSSL N + K D Sbjct: 147 AHGYGVKALLNDLV---KGLSPSEDTGEDSEEIR----VAVLGKPNVGKSSLINRILKTD 199 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEK 286 +V+++PGTTRD + G + DTAGIR + EK Sbjct: 200 RLVVSELPGTTRDTVDSAFSYGGREYLLIDTAGIRRKSRVREK 242 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS+LFN L + A+V D PG TRD L + EG + + DT G + Sbjct: 5 IAIVGRPNVGKSTLFNRLTRSKRALVDDRPGITRDRLHGTISHEGLQMTLVDTGGFEDLG 64 Query: 282 DIVEKEGIK-RTFLEVENADLILLL 305 ++G++ + ++ AD I+ + Sbjct: 65 QDPLQKGVRAQVETAIQEADRIIFM 89 >gi|53804568|ref|YP_113568.1| ferrous iron transport protein B [Methylococcus capsulatus str. Bath] gi|53758329|gb|AAU92620.1| ferrous iron transport protein B [Methylococcus capsulatus str. Bath] Length = 595 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 68/147 (46%), Gaps = 4/147 (2%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I ++G N GKS+ FN L A V + PG T D+L+ + L G + ++ D GI Sbjct: 3 RIALVGMPNTGKSTFFNRLTGAS-ARVGNWPGITVDLLSARIILGGTVAQVVDLPGIYSF 61 Query: 281 DDIVEKEGIKRTFLEVENADLI-LLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY 339 E E + R FLE DL+ ++L +++ F + +G + L +E Sbjct: 62 HGFSEDEKVVRDFLENNPVDLVAVVLNATQIDRQLPFALQVA--RLGLPTVLLLNMADEA 119 Query: 340 DHLISSFTGEGLEELINKIKSILSNKF 366 HL S + EL+ +LS K+ Sbjct: 120 RHLGISIDARRMAELLRMPVILLSAKY 146 >gi|171780272|ref|ZP_02921176.1| hypothetical protein STRINF_02060 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281620|gb|EDT47055.1| hypothetical protein STRINF_02060 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 437 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 74/148 (50%), Gaps = 31/148 (20%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRE 279 K ++G N GKSSL NA+ ++ I + I GTTRD + + D EG + DTAG+R+ Sbjct: 177 KFSLIGRPNVGKSSLINAILGEERVIASPIAGTTRDAIDTNFTDSEGQEYTMIDTAGMRK 236 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336 + + EK + R+ ++ +D++L++ IN+++ I Sbjct: 237 SGKVYENTEKYSVMRSMRAIDRSDIVLMV--INAEEGI---------------------- 272 Query: 337 EEYDHLISSF---TGEGLEELINKIKSI 361 EYD I+ F G+G+ ++NK +I Sbjct: 273 REYDKRIAGFAHEAGKGIIIVVNKWDTI 300 Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 45/84 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN +A + ++IV D+ G TRD + + + DT GI + D Sbjct: 6 VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTTGEWLNRKFSLIDTGGIDDVD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + + + AD+I+ + Sbjct: 66 APFMEQIKHQADIAMTEADVIVFV 89 >gi|90408609|ref|ZP_01216764.1| GTP-binding protein EngA [Psychromonas sp. CNPT3] gi|90310301|gb|EAS38431.1| GTP-binding protein EngA [Psychromonas sp. CNPT3] Length = 488 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 54/88 (61%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 K+ I+G N GKS+L N + ++ +V D PGTTRD + I + + + DTAG+R Sbjct: 201 KLAIIGKPNVGKSTLINRILGEERVVVFDQPGTTRDSIYIPMSRDDREYILIDTAGVRKR 260 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305 + ++ VEK + +T +E+A+++LL+ Sbjct: 261 KKVNETVEKFSVIKTLKAIEDANVVLLV 288 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 44/84 (52%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L + A+V D PG TRD L+ + DT GI + Sbjct: 5 IALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLDEDEFIVIDTGGITGDE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + ++ ++ L ++ AD +L + Sbjct: 65 EGIDSLMAGQSLLAIDEADAVLFM 88 >gi|313157956|gb|EFR57362.1| ribosome biogenesis GTPase Der [Alistipes sp. HGB5] Length = 434 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 54/188 (28%), Positives = 82/188 (43%), Gaps = 38/188 (20%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFN L + AIV GTTRD D G + DT G + Sbjct: 4 VAIVGRPNVGKSTLFNRLVGQRKAIVDATAGTTRDRHYGKTDWNGKEFSVIDTGGYTVNS 63 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI-----------------NSKKEISFPKNIDFI 323 +DI E E ++ L ++ AD+IL L E+ SKK I +D Sbjct: 64 EDIFEDEIRRQVLLAIDEADVILFLVEVATGITDLDQLMADILRRTSKKVILVCNKVD-- 121 Query: 324 FIGTKSDLYSTYTEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376 +YS++ E+ L ISS +G G +L++ I + L + ++P Sbjct: 122 ---NNDQIYSSH--EFYALGLGDPFCISSMSGSGTGDLMDAILAALPAE------TVPEE 170 Query: 377 KRHLYHLS 384 L H++ Sbjct: 171 DEDLPHIT 178 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 3/87 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKSS+ NAL ++ IVT I GTTRD + + G + DTAG+R+ Sbjct: 177 ITIVGRPNVGKSSMTNALLGEERNIVTSIAGTTRDSIHTRYNKFGMDFYLVDTAGMRKKG 236 Query: 282 DIVEK---EGIKRTFLEVENADLILLL 305 +E + R+ +EN+D+ +L+ Sbjct: 237 KAMEDLEFYSVMRSIRAIENSDVCILM 263 >gi|299783191|gb|ADJ41189.1| GTP-binding protein engA [Lactobacillus fermentum CECT 5716] Length = 370 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/154 (26%), Positives = 73/154 (47%), Gaps = 17/154 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN +A + +AIV D PG TRD L + G + DT GI +D Sbjct: 6 VAIVGRPNVGKSTLFNRIAGERIAIVEDTPGVTRDRLYAHGEWLGKNFSMIDTGGIEMSD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333 + + ++ + +E AD+I+++ + + +I + N + K D Sbjct: 66 QPLLTQIRQQAEIAIEEADVIIMVVNVENGVTDADEQVAQILYRSNKPVVLAVNKVDNPE 125 Query: 334 TYTEEYD---------HLISSFTGEGLEELINKI 358 + YD + +SS G GL ++++ + Sbjct: 126 RRLDVYDFYQLGLGEPYPVSSVHGVGLGDMLDAV 159 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 50/85 (58%), Gaps = 4/85 (4%) Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDI 283 +G N GKSSL NA+ ++ IV+D+ GTTRD + +G + DTAGI++ + Sbjct: 180 IGRPNVGKSSLVNAILGENRVIVSDMAGTTRDAINTQFTAKDGREFTMVDTAGIKKKGKL 239 Query: 284 ---VEKEGIKRTFLEVENADLILLL 305 E+ + R+ ++++D++L++ Sbjct: 240 YENTERYALMRSMRAIDDSDVVLVV 264 >gi|167754612|ref|ZP_02426739.1| hypothetical protein CLORAM_00114 [Clostridium ramosum DSM 1402] gi|237733753|ref|ZP_04564234.1| GTP-binding protein engA [Mollicutes bacterium D7] gi|167705444|gb|EDS20023.1| hypothetical protein CLORAM_00114 [Clostridium ramosum DSM 1402] gi|229383091|gb|EEO33182.1| GTP-binding protein engA [Coprobacillus sp. D7] Length = 434 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 53/90 (58%), Gaps = 3/90 (3%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 I+G N GKSSL NA+ ++ IV++I GTTRD + +G ++ DTAG+R+ + Sbjct: 178 IIGRPNVGKSSLTNAILGEERVIVSNIEGTTRDAIDTAFVKDGQKYRVIDTAGMRKKGKV 237 Query: 284 ---VEKEGIKRTFLEVENADLILLLKEINS 310 +EK I R +E +D+I+++ + N Sbjct: 238 YENIEKYSILRALSSIEKSDVIVVVIDGNQ 267 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 27/94 (28%), Positives = 50/94 (53%), Gaps = 2/94 (2%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G +N GKS++FN + + ++IV D+ G TRD + ++ DT GI D Sbjct: 5 VAIVGRANVGKSTIFNRIVGERISIVEDVAGVTRDRIYATATWLTKEFRLIDTGGIELQD 64 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + + + +E ADLI+ + +N ++ I+ Sbjct: 65 ASFTAQIKMQAEIAIEEADLIVFV--VNGREGIT 96 >gi|308189663|ref|YP_003922594.1| GTP-binding protein [Mycoplasma fermentans JER] gi|319776823|ref|YP_004136474.1| gtp-binding protein era [Mycoplasma fermentans M64] gi|307624405|gb|ADN68710.1| GTP-binding protein [Mycoplasma fermentans JER] gi|318037898|gb|ADV34097.1| GTP-binding protein Era [Mycoplasma fermentans M64] Length = 289 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 50/88 (56%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 I+G N GKSSL N + K DVAIVT++P TTRD + + + + + DT GI + ++ Sbjct: 8 IIGRPNVGKSSLINQIVKYDVAIVTNVPQTTRDQIVGVYNEDDFQLVFVDTPGIHKPLNL 67 Query: 284 VEKEGIKRTFLEVENADLILLLKEINSK 311 + + K F ++ D ++ L +N K Sbjct: 68 LGEALNKSAFESTKDVDCLIFLSPVNEK 95 >gi|239917900|ref|YP_002957458.1| GTP-binding protein Era [Micrococcus luteus NCTC 2665] gi|281413599|ref|ZP_06245341.1| GTP-binding protein EngA [Micrococcus luteus NCTC 2665] gi|239839107|gb|ACS30904.1| GTP-binding protein Era [Micrococcus luteus NCTC 2665] Length = 512 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/67 (46%), Positives = 41/67 (61%), Gaps = 1/67 (1%) Query: 213 GEIIRNG-YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 G + R G +I ++G N GKSSL N LA D +V D+ GTTRD + ++L G L + Sbjct: 242 GLVPRGGPRRIALVGRPNVGKSSLLNKLAGSDRVVVDDLAGTTRDPVDELVELGGRLWRF 301 Query: 272 SDTAGIR 278 DTAGIR Sbjct: 302 VDTAGIR 308 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 5/74 (6%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+L N + + A+V D+PG TRD ++ D + G + DT G Sbjct: 77 LAIVGRPNVGKSTLVNRIIGRREAVVEDVPGVTRDRVSYDAEWNGREFTVVDTGGWEH-- 134 Query: 282 DIVEKEGIKRTFLE 295 + +GI R E Sbjct: 135 ---DAKGIHRRVAE 145 >gi|288941004|ref|YP_003443244.1| ribosome-associated GTPase EngA [Allochromatium vinosum DSM 180] gi|288896376|gb|ADC62212.1| ribosome-associated GTPase EngA [Allochromatium vinosum DSM 180] Length = 467 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 53/90 (58%), Gaps = 5/90 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS--DTAGIR 278 K+ ++G NAGKS+L N L ++ + D PGTTRD + I + G+ + + DTAG+R Sbjct: 179 KVAVVGRPNAGKSTLINRLLGEERQVTFDSPGTTRDSIFIPFERPGHDQRYTLIDTAGLR 238 Query: 279 ---ETDDIVEKEGIKRTFLEVENADLILLL 305 D +EK + +T +E A++I+L+ Sbjct: 239 RRARVHDPIEKFSVIKTLQAIEEANVIILV 268 Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust. Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 3/101 (2%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L + A+V D PG TRD + I DT GI Sbjct: 5 ITLIGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRQYGIGRIGPRPYVIVDTGGIGTAA 64 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF 322 + +E ++ VE AD +L + + ++ P++ID Sbjct: 65 EGIEALMERQVQRAVEEADHLLFMVDT---RDGCTPEDIDI 102 >gi|311110809|ref|ZP_07712206.1| ribosome-associated GTPase EngA [Lactobacillus gasseri MV-22] gi|311065963|gb|EFQ46303.1| ribosome-associated GTPase EngA [Lactobacillus gasseri MV-22] Length = 389 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/179 (25%), Positives = 84/179 (46%), Gaps = 29/179 (16%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 ++G N GKSSL NA+ + IV++I GTTRD + +G I DTAGIR + Sbjct: 133 VIGRPNVGKSSLVNAILGEQRVIVSNIEGTTRDAIDTTFTNDGQKYTIVDTAGIRRRGKV 192 Query: 284 VEKE---GIKRTFLEVENADLILLLKEINS------KKEISFPKNI--DFIFIGTKSDLY 332 EK + R +E +D+ LL+ + ++ K + + I + K DL Sbjct: 193 YEKTEKYSVLRAISAIEESDITLLVLDASTGIREQDKHVAGYAHDAGRGVIIVVNKWDLP 252 Query: 333 STYT-----------EEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLPFSI 373 Y+ +E+ +L +S+ TG+ + +++ +K + N+ +++ S+ Sbjct: 253 KKYSTSMKDFEDTIRQEFQYLDYAPIVFVSAKTGQRVPDILKLVKEVHDNQTRRIKSSV 311 >gi|302390495|ref|YP_003826316.1| iron-only hydrogenase maturation protein HydF [Thermosediminibacter oceani DSM 16646] gi|302201123|gb|ADL08693.1| iron-only hydrogenase maturation protein HydF [Thermosediminibacter oceani DSM 16646] Length = 414 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 51/171 (29%), Positives = 83/171 (48%), Gaps = 24/171 (14%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280 I I G NAGKSSL NA+ +D+A+V+ + GTT D + ++L V I DTAGI + Sbjct: 17 IAIFGRRNAGKSSLINAITNQDIALVSSVAGTTTDPVFKAMELLPIGPVVIIDTAGIDDE 76 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS----------FPKNIDFIFIGTKSD 330 ++ E IK+T+ + DL +L+ I+ ++ KNI + + KSD Sbjct: 77 GELGELR-IKKTYQVLNKTDLAVLI--IDGGMGVTGYDLEILERIREKNIPVVGVINKSD 133 Query: 331 LYSTYTEEYDHL----------ISSFTGEGLEELINKIKSILSNKFKKLPF 371 + EE + +S+ +G+EEL +I + + F + P Sbjct: 134 VAGYTPEEKETWEKRLGLKLVEVSALKRQGIEELKREIINKAPSSFAERPL 184 >gi|329850909|ref|ZP_08265754.1| ribosome-associated GTPase EngA [Asticcacaulis biprosthecum C19] gi|328841224|gb|EGF90795.1| ribosome-associated GTPase EngA [Asticcacaulis biprosthecum C19] Length = 556 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/108 (36%), Positives = 60/108 (55%), Gaps = 6/108 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE- 279 KI I+G N GKS+LFN LA K +AIV D PG TRD +L + + DTAG + Sbjct: 4 KIAIVGRPNVGKSTLFNRLAGKKLAIVDDQPGVTRDRRYATGNLGDIPLLLIDTAGFEDL 63 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGT 327 TDD +E +T L ++ D+ + +++++ ++ +D IF T Sbjct: 64 TDDSLESRMRVQTELALDECDVAFFV--VDAREGVT---PLDRIFAAT 106 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 39/66 (59%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I I+G NAGKS+L N L ++ + G TRD +++D EG +++ DTAG+R Sbjct: 186 RIAIIGRPNAGKSTLINKLLGEERLLTGPEAGITRDSISVDWLYEGRTIRLVDTAGLRRK 245 Query: 281 DDIVEK 286 + EK Sbjct: 246 ARVQEK 251 >gi|256846327|ref|ZP_05551784.1| ribosome-associated GTPase EngA [Fusobacterium sp. 3_1_36A2] gi|256718096|gb|EEU31652.1| ribosome-associated GTPase EngA [Fusobacterium sp. 3_1_36A2] Length = 440 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ ++G NAGKSSL N L+ ++ IV+DI GTTRD + ++ + I DTAGIR Sbjct: 178 KLAVIGKPNAGKSSLVNKLSGEERTIVSDIAGTTRDAIDTLIEYKDNKYMIIDTAGIRRK 237 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E + R ++ AD+ +L+ Sbjct: 238 SKVEESLEYYSVLRALKAIKRADVCILM 265 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 46/143 (32%), Positives = 70/143 (48%), Gaps = 13/143 (9%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFN L +AIV D+PG TRD L D + G I DT G+ Sbjct: 5 VAIVGRPNVGKSTLFNNLVGDKIAIVDDLPGVTRDRLYRDAEWSGSEFVIVDTGGLEPRN 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISF---PKNIDFIFIGTKSDLY 332 +D + + ++ + + AD+IL + + S +EI++ KN I K D Sbjct: 65 NDFLMAKIKEQAEVAMNEADVILFIVDGKSGLNPLDEEIAYILRKKNKPVILCVNKID-- 122 Query: 333 STYTEEYDHLISSFTGEGLEELI 355 + E+ D + F G G E L+ Sbjct: 123 -NFFEQQDD-VYDFYGLGFEYLV 143 >gi|288575053|ref|ZP_06393410.1| small GTP-binding protein [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570794|gb|EFC92351.1| small GTP-binding protein [Dethiosulfovibrio peptidovorans DSM 11002] Length = 444 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/86 (41%), Positives = 52/86 (60%), Gaps = 5/86 (5%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG--IRE 279 + I+G N GKSSLFN L + AIV D+PG TRD L ++ G + DT G +R+ Sbjct: 4 VTIVGRPNVGKSSLFNRLIGERRAIVDDVPGVTRDRLYGQVEWRGNSFYLVDTGGLLLRD 63 Query: 280 TDDIVEKEGIKRTFLE-VENADLILL 304 D I+ EG+K ++ +E +D+ILL Sbjct: 64 EDPIM--EGMKGQIVQAMEESDVILL 87 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 55/89 (61%), Gaps = 4/89 (4%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRE 279 K+ ++G N GKSS+ N L ++ ++V+D+PGTTRD + ++L +G +++ DTAG+R Sbjct: 177 KVALVGRPNVGKSSILNRLLGENRSLVSDVPGTTRDSIDSLMELDDGRKLRLIDTAGLRR 236 Query: 280 TD---DIVEKEGIKRTFLEVENADLILLL 305 D +E RT ++ +D+ +L+ Sbjct: 237 KSRFKDDIEYYSFVRTMESIDRSDVSILV 265 >gi|77405817|ref|ZP_00782901.1| GTP-binding protein, Era/ThdF family [Streptococcus agalactiae H36B] gi|77414237|ref|ZP_00790399.1| GTP-binding protein, Era/ThdF family [Streptococcus agalactiae 515] gi|77159726|gb|EAO70875.1| GTP-binding protein, Era/ThdF family [Streptococcus agalactiae 515] gi|77175604|gb|EAO78389.1| GTP-binding protein, Era/ThdF family [Streptococcus agalactiae H36B] gi|319745628|gb|EFV97929.1| ribosome-associated GTPase EngA [Streptococcus agalactiae ATCC 13813] Length = 436 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 74/145 (51%), Gaps = 31/145 (21%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID-LDLEGYLVKISDTAGIRETDD 282 ++G N GKSSL NA+ +D I + + GTTRD + + +D +G + DTAG+R++ Sbjct: 179 LIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTNFVDSQGQEYTMIDTAGMRKSGK 238 Query: 283 I---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY 339 + EK + R+ ++ +D++L++ IN+++ I EY Sbjct: 239 VYENTEKYSVMRSMRAIDRSDVVLMV--INAEEGI----------------------REY 274 Query: 340 DHLISSF---TGEGLEELINKIKSI 361 D I+ F G+G+ ++NK +I Sbjct: 275 DKRIAGFAHEAGKGIIIVVNKWDTI 299 Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 45/84 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN +A + ++IV D+ G TRD + + + DT GI + D Sbjct: 6 VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTTGEWLNRKFSLIDTGGIDDVD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + + + AD+I+ + Sbjct: 66 APFMEQIKHQADIAMTEADVIVFV 89 >gi|293374967|ref|ZP_06621262.1| ribosome-associated GTPase EngA [Turicibacter sanguinis PC909] gi|325843340|ref|ZP_08167923.1| ribosome biogenesis GTPase Der [Turicibacter sp. HGF1] gi|292646377|gb|EFF64392.1| ribosome-associated GTPase EngA [Turicibacter sanguinis PC909] gi|325489369|gb|EGC91742.1| ribosome biogenesis GTPase Der [Turicibacter sp. HGF1] Length = 436 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K ++G N GKSSL NAL ++ IV+DI GTTRD + + +G + DTAG+R+ Sbjct: 177 KFSLIGRPNVGKSSLTNALLGEERVIVSDIAGTTRDAIDTEFTKDGQKYVVIDTAGMRKR 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + EK + R +E +D+ L++ Sbjct: 237 GKVYETTEKYSVLRALSAIERSDVCLIV 264 Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 44/84 (52%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN + V+IV D PG TRD + + + DT GI D Sbjct: 6 VAIVGRPNVGKSTIFNRIVGSRVSIVEDEPGITRDRIYSSGEWLTRKFNVIDTGGIEIGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + ++ + + ++ AD+I+ + Sbjct: 66 EPFMRQIKYQAEIAMDEADVIVFV 89 >gi|260583467|ref|ZP_05851215.1| ribosome-associated GTPase EngA [Granulicatella elegans ATCC 700633] gi|260158093|gb|EEW93161.1| ribosome-associated GTPase EngA [Granulicatella elegans ATCC 700633] Length = 437 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 50/85 (58%), Gaps = 4/85 (4%) Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRETDDI 283 +G N GKSSL NA+ ++ IV+++ GTTRD + D EG + K+ DTAGIR+ + Sbjct: 181 IGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAIDTSFTDEEGTIFKMIDTAGIRKKGRV 240 Query: 284 ---VEKEGIKRTFLEVENADLILLL 305 EK + R +E +D++ ++ Sbjct: 241 FESTEKYSVLRALRAIERSDIVCVV 265 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 48/87 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS++FN + + ++IV DI G TRD + + + G+ I DT GI TD Sbjct: 6 IAIVGRPNVGKSTIFNRVVGERISIVEDIAGVTRDRIYSEGEWLGHQFHIIDTGGIDITD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI 308 + + + +E AD+I+ L + Sbjct: 66 EPFMSNIRMQAEIAMEEADVIIFLTSV 92 >gi|254460403|ref|ZP_05073819.1| GTP-binding protein [Rhodobacterales bacterium HTCC2083] gi|206676992|gb|EDZ41479.1| GTP-binding protein [Rhodobacteraceae bacterium HTCC2083] Length = 490 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 1/87 (1%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 + + I+G N GKS+LFN L K +A+V D PG TRD+ D L + DTAG+ E Sbjct: 3 FTLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGDARLADLRFTVIDTAGLEE 62 Query: 280 -TDDIVEKEGIKRTFLEVENADLILLL 305 TD+ ++ + T V+ AD+ L + Sbjct: 63 ATDESLQGRMRRLTERAVDMADICLFM 89 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 50/88 (56%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 +I ++G NAGKS+L N + +D + G TRD +++ + G ++I DTAG+R Sbjct: 203 QIAVVGRPNAGKSTLINMIMGEDRLLTGPEAGITRDAISLRSEWNGTHIRIFDTAGMRKK 262 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305 + D +EK + V+ A+++++L Sbjct: 263 AKVQDKLEKLSVSDGLRAVKFAEVVVVL 290 >gi|89068274|ref|ZP_01155684.1| GTP-binding protein EngA [Oceanicola granulosus HTCC2516] gi|89046191|gb|EAR52249.1| GTP-binding protein EngA [Oceanicola granulosus HTCC2516] Length = 488 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/87 (39%), Positives = 49/87 (56%), Gaps = 1/87 (1%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 + + I+G N GKS+LFN L K +A+V D PG TRD+ + L + DTAG+ E Sbjct: 3 FTLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGEARLADLRFTVIDTAGLEE 62 Query: 280 -TDDIVEKEGIKRTFLEVENADLILLL 305 TD+ ++ + T VE AD+ L L Sbjct: 63 ATDESLQGRMRRLTERAVEMADVCLFL 89 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 41/66 (62%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ ++G NAGKS+L N + ++ + G TRD +++ L+ EG V++ DTAG+R+ Sbjct: 201 QVAVVGRPNAGKSTLINRILGEERLLTGPEAGITRDSISLTLEWEGTPVRLFDTAGMRKR 260 Query: 281 DDIVEK 286 + +K Sbjct: 261 AKVQDK 266 >gi|296328064|ref|ZP_06870598.1| ribosome-associated GTPase EngA [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296154840|gb|EFG95623.1| ribosome-associated GTPase EngA [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 440 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ ++G NAGKSSL N L+ ++ IV+DI GTTRD + ++ + I DTAGIR Sbjct: 178 KLAVIGKPNAGKSSLVNKLSGEERTIVSDIAGTTRDAIDTLIEYKDNKYMIIDTAGIRRK 237 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E + R ++ AD+ +L+ Sbjct: 238 SKVEESLEYYSVLRALKAIKRADVCILM 265 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 46/143 (32%), Positives = 70/143 (48%), Gaps = 13/143 (9%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFN L +AIV D+PG TRD L D + G I DT G+ Sbjct: 5 VAIVGRPNVGKSTLFNNLVGDKIAIVDDLPGVTRDRLYRDTEWSGSEFVIVDTGGLEPRN 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISF---PKNIDFIFIGTKSDLY 332 +D + + ++ + + AD+IL + + S +EI++ KN I K D Sbjct: 65 NDFLMAKIKEQAEVAMNEADVILFVVDGKSGLNPLDEEIAYILRKKNKPVILCVNKID-- 122 Query: 333 STYTEEYDHLISSFTGEGLEELI 355 + E+ D + F G G E L+ Sbjct: 123 -NFFEQQDD-VYDFYGLGFEYLV 143 >gi|256027086|ref|ZP_05440920.1| GTP-binding protein [Fusobacterium sp. D11] gi|289765066|ref|ZP_06524444.1| GTP-binding protein [Fusobacterium sp. D11] gi|289716621|gb|EFD80633.1| GTP-binding protein [Fusobacterium sp. D11] Length = 440 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ ++G NAGKSSL N L+ ++ IV+DI GTTRD + ++ + I DTAGIR Sbjct: 178 KLAVIGKPNAGKSSLVNKLSGEERTIVSDIAGTTRDAIDTLIEYKDNKYMIIDTAGIRRK 237 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E + R ++ AD+ +L+ Sbjct: 238 SKVEESLEYYSVLRALKAIKRADVCILM 265 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 46/143 (32%), Positives = 70/143 (48%), Gaps = 13/143 (9%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFN L +AIV D+PG TRD L D + G I DT G+ Sbjct: 5 VAIVGRPNVGKSTLFNNLVGDKIAIVDDLPGVTRDRLYRDTEWSGSEFVIVDTGGLEPRN 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISF---PKNIDFIFIGTKSDLY 332 +D + + ++ + + AD+IL + + S +EI++ KN I K D Sbjct: 65 NDFLMAKIKEQAEVAMNEADVILFVVDGKSGLNPLDEEIAYILRKKNKPVILCVNKID-- 122 Query: 333 STYTEEYDHLISSFTGEGLEELI 355 + E+ D + F G G E L+ Sbjct: 123 -NFFEQQDD-VYDFYGLGFEYLV 143 >gi|318042392|ref|ZP_07974348.1| GTP-binding protein Der [Synechococcus sp. CB0101] Length = 454 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/91 (40%), Positives = 56/91 (61%), Gaps = 3/91 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSL NA+ + AIV+ I GTTRD + ++ EG+ KI DTAGIR Sbjct: 178 QLAIIGRPNVGKSSLLNAICGEKRAIVSPIRGTTRDTIDTTIEREGHTWKILDTAGIRRK 237 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEI 308 + E GI R+F +E +D+ +L+ ++ Sbjct: 238 RSVNYGPEFFGINRSFKAIERSDVCVLVIDV 268 Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 31/61 (50%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+L N L K AIV D PG TRD D K+ DT G+ D Sbjct: 6 VAIIGRPNVGKSTLVNRLCKSREAIVHDEPGVTRDRTYQDGYWRDRHFKVVDTGGLVFDD 65 Query: 282 D 282 D Sbjct: 66 D 66 >gi|303248222|ref|ZP_07334485.1| ribosome-associated GTPase EngA [Desulfovibrio fructosovorans JJ] gi|302490360|gb|EFL50271.1| ribosome-associated GTPase EngA [Desulfovibrio fructosovorans JJ] Length = 443 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/89 (38%), Positives = 49/89 (55%), Gaps = 9/89 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN LAK+ AI D PG TRD L ++L +V + DT G+ Sbjct: 5 VAIVGRPNVGKSTLFNRLAKRPKAITHDRPGVTRDRLEATVELGDRIVTLIDTGGM---- 60 Query: 282 DIVEKEGIKRTF-----LEVENADLILLL 305 D EG++R + + AD++L L Sbjct: 61 DFDAPEGLERQIVVQAEIALTMADVVLFL 89 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 2/73 (2%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G ++ +LG NAGKSSL N L ++ IV+D+ GTTRD + + L G DTAG+R Sbjct: 180 GIRLAVLGRPNAGKSSLVNELLGQERLIVSDVAGTTRDAVDVALVKNGRRYVFVDTAGVR 239 Query: 279 ETDDIVEKEGIKR 291 + I +G++R Sbjct: 240 KRTRIT--DGLER 250 >gi|260496851|ref|ZP_05815971.1| ribosome-associated GTPase EngA [Fusobacterium sp. 3_1_33] gi|260196593|gb|EEW94120.1| ribosome-associated GTPase EngA [Fusobacterium sp. 3_1_33] Length = 440 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ ++G NAGKSSL N L+ ++ IV+DI GTTRD + ++ + I DTAGIR Sbjct: 178 KLAVIGKPNAGKSSLVNKLSGEERTIVSDIAGTTRDAIDTLIEYKDNKYMIIDTAGIRRK 237 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E + R ++ AD+ +L+ Sbjct: 238 SKVEESLEYYSVLRALKAIKRADVCILM 265 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 46/143 (32%), Positives = 70/143 (48%), Gaps = 13/143 (9%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFN L +AIV D+PG TRD L D + G I DT G+ Sbjct: 5 VAIVGRPNVGKSTLFNNLVGDKIAIVDDLPGVTRDRLYRDTEWSGSEFVIVDTGGLEPRN 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISF---PKNIDFIFIGTKSDLY 332 +D + + ++ + + AD+IL + + S +EI++ KN I K D Sbjct: 65 NDFLMAKIKEQAEVAMNEADVILFVVDGKSGLNPLDEEIAYILRKKNKPVILCVNKID-- 122 Query: 333 STYTEEYDHLISSFTGEGLEELI 355 + E+ D + F G G E L+ Sbjct: 123 -NFFEQQDD-VYDFYGLGFEYLV 143 >gi|116334903|ref|YP_802398.1| tRNA modification GTPase [Candidatus Carsonella ruddii PV] gi|123126218|sp|Q05FY9|MNME_CARRP RecName: Full=tRNA modification GTPase mnmE gi|116235184|dbj|BAF35032.1| tRNA modification GTPase [Candidatus Carsonella ruddii PV] Length = 438 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 70/245 (28%), Positives = 119/245 (48%), Gaps = 33/245 (13%) Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 ++ + I+ILG N GKS+LFN + + +IVT+IPGTT+++++ + + +K+ DTA Sbjct: 207 LKKNFTIMILGRRNVGKSTLFNKICAQYDSIVTNIPGTTKNIISKKIKILSKKIKMMDTA 266 Query: 276 GIR-ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF---------IFI 325 G++ T +++EK GI + ++ +LIL + + + K I F IDF I + Sbjct: 267 GLKIRTKNLIEKIGIIKNINKIYQGNLILYMIDKFNIKNIFFNIPIDFIDKIKLNELIIL 326 Query: 326 GTKSDLYS------TYTEEYDHLISSFTGEGLEELINKIKSILSNK-FKKLPFS---IPS 375 KSD+ LISS G ++ L I I+ NK F K +S I Sbjct: 327 VNKSDILGKEEGVFKIKNILIILISSKNGTFIKNLKCFINKIVDNKDFSKNNYSDVKILF 386 Query: 376 HKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSK 435 +K ++ E C D++ L ++ K+TG +++++ F Sbjct: 387 NKFSFFY-------------KEFSCNYDLVLSKLIDFQKNIFKLTGNFTNKKIINSCFRN 433 Query: 436 FCIGK 440 FCIGK Sbjct: 434 FCIGK 438 >gi|87161650|ref|YP_494061.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|161509642|ref|YP_001575301.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|294848438|ref|ZP_06789184.1| ribosome-associated GTPase EngA [Staphylococcus aureus A9754] gi|123485886|sp|Q2FGW7|DER_STAA3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|189037166|sp|A8Z454|DER_STAAT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|87127624|gb|ABD22138.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|160368451|gb|ABX29422.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|294824464|gb|EFG40887.1| ribosome-associated GTPase EngA [Staphylococcus aureus A9754] gi|315197778|gb|EFU28112.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus CGS01] gi|320142720|gb|EFW34523.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus MRSA177] Length = 436 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSL NA+ +D IV+++ GTTRD + + +G + DTAG+R+ Sbjct: 177 RLSIIGRPNVGKSSLVNAILGEDRVIVSNVAGTTRDAIDTEYSYDGQDYVLIDTAGMRKK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + EK + R +E ++++L++ Sbjct: 237 GKVYESTEKYSVLRALKAIERSNVVLVV 264 Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 44/84 (52%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN + + V+IV D PG TRD + + + I DT GI D Sbjct: 6 VAIVGRPNVGKSTIFNRIVGERVSIVEDTPGVTRDRIYSSGEWLTHDFNIIDTGGIEIGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + + + ++ A +I+ + Sbjct: 66 APFQTQIRAQAEIAIDEAYVIIFM 89 >gi|332359145|gb|EGJ36966.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK49] Length = 436 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 74/148 (50%), Gaps = 31/148 (20%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRE 279 K ++G N GKSSL NA+ +D I + + GTTRD + T+ D EG + DTAG+R+ Sbjct: 176 KFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTVFTDSEGQEFTMIDTAGMRK 235 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336 + + EK + R ++ +D++L++ +N+++ I Sbjct: 236 SGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEGI---------------------- 271 Query: 337 EEYDHLISSF---TGEGLEELINKIKSI 361 EYD I+ F G+G+ ++NK ++ Sbjct: 272 REYDKRIAGFAHEAGKGIIIVVNKWDTL 299 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS+LFN +A + ++IV D+ G TRD + + I DT GI + D Sbjct: 6 IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATANWLNRKFSIIDTGGIDDVD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + + ++ AD+I+ + Sbjct: 66 APFMEQIKHQAEIAMDEADVIVFV 89 >gi|292492503|ref|YP_003527942.1| small GTP-binding protein [Nitrosococcus halophilus Nc4] gi|291581098|gb|ADE15555.1| small GTP-binding protein [Nitrosococcus halophilus Nc4] Length = 464 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 3/91 (3%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 G + ++G N GKS+L N L ++ + + PGTTRD + I +G + DTAGI Sbjct: 175 RGLQFAVVGRPNVGKSTLVNRLLGEERVLSFEAPGTTRDSIAIPFCHQGQDYTLVDTAGI 234 Query: 278 RETD---DIVEKEGIKRTFLEVENADLILLL 305 R D++EK I +T +E A +++L+ Sbjct: 235 RRRSKILDMLEKFSIAKTLEAIEAAQVVILV 265 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 32/86 (37%), Positives = 45/86 (52%), Gaps = 4/86 (4%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD--VLTIDLDLEGYLVKISDTAGIRE 279 + ++G N GKS+LFN L + A+V D PG TRD + +LV DT GI E Sbjct: 5 VALVGRPNVGKSTLFNRLTRSRDALVADQPGVTRDRKYGIARYGEQSFLV--VDTGGITE 62 Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305 + V + + L +E AD+IL L Sbjct: 63 QESGVGELMRVQAQLAIEEADIILFL 88 >gi|237743522|ref|ZP_04574003.1| GTP-binding protein [Fusobacterium sp. 7_1] gi|229433301|gb|EEO43513.1| GTP-binding protein [Fusobacterium sp. 7_1] Length = 440 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ ++G NAGKSSL N L+ ++ IV+DI GTTRD + ++ + I DTAGIR Sbjct: 178 KLAVIGKPNAGKSSLVNKLSGEERTIVSDIAGTTRDAIDTLIEYKDNKYMIIDTAGIRRK 237 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E + R ++ AD+ +L+ Sbjct: 238 SKVEESLEYYSVLRALKAIKRADVCILM 265 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 46/143 (32%), Positives = 70/143 (48%), Gaps = 13/143 (9%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFN L +AIV D+PG TRD L D + G I DT G+ Sbjct: 5 VAIVGRPNVGKSTLFNNLVGDKIAIVDDLPGVTRDRLYRDTEWSGSEFVIVDTGGLEPRN 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISF---PKNIDFIFIGTKSDLY 332 +D + + ++ + + AD+IL + + S +EI++ KN I K D Sbjct: 65 NDFLMAKIKEQAEVAMNEADVILFVVDGKSGLNPLDEEIAYILRKKNKPVILCVNKID-- 122 Query: 333 STYTEEYDHLISSFTGEGLEELI 355 + E+ D + F G G E L+ Sbjct: 123 -NFFEQQDD-VYDFYGLGFEYLV 143 >gi|332969954|gb|EGK08954.1| ribosome-associated GTPase EngA [Kingella kingae ATCC 23330] Length = 489 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/96 (33%), Positives = 58/96 (60%), Gaps = 5/96 (5%) Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---E 279 ++G N GKS+L NA+ ++ I D+ GTTRD + ID + + I DTAG+R + Sbjct: 179 AVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSIHIDFERDNKPFTIIDTAGVRRRGK 238 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D+ VEK + + VE A++ +L+ ++++++I+ Sbjct: 239 VDEAVEKFSVIKAMQAVEAANVAVLV--LDAQQDIA 272 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280 I ++G N GKS+LFN L K A+V D+PG TRD + + DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTKTKDALVHDLPGLTRDRHYGHAKVGSKPYLVVDTGGFEPVV 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 D + E K+T V+ AD ++ L Sbjct: 65 DSGILHEMAKQTLQAVDEADAVIFL 89 >gi|218282475|ref|ZP_03488734.1| hypothetical protein EUBIFOR_01316 [Eubacterium biforme DSM 3989] gi|218216571|gb|EEC90109.1| hypothetical protein EUBIFOR_01316 [Eubacterium biforme DSM 3989] Length = 435 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 50/85 (58%), Gaps = 3/85 (3%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 ++G N GKSSL N++ K+D IV+++ GTTRD + ++ I DTAGIR+ I Sbjct: 179 VIGRPNVGKSSLVNSILKEDRVIVSNVEGTTRDAIDTPFHVDDKEYMIIDTAGIRKKGKI 238 Query: 284 ---VEKEGIKRTFLEVENADLILLL 305 +EK I R ++ ++++L L Sbjct: 239 YENIEKYSILRALSAIDRSNVVLFL 263 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN L + +IV D PG TRD + +++ ++ DT GI+ D Sbjct: 6 VAIVGRPNVGKSTIFNRLIGQRKSIVDDTPGVTRDRIYGEVEWLTQTFRLIDTGGIQIED 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 +E + + +E AD+I+ L Sbjct: 66 QAFAQEINMQVDIAIEEADVIIFL 89 >gi|148556031|ref|YP_001263613.1| GTP-binding protein EngA [Sphingomonas wittichii RW1] gi|148501221|gb|ABQ69475.1| small GTP-binding protein [Sphingomonas wittichii RW1] Length = 454 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/86 (43%), Positives = 46/86 (53%), Gaps = 3/86 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN L K +A+V D PG TRD D L G ++ DTAG ETD Sbjct: 7 VAIVGRPNVGKSTLFNRLVGKKLALVDDRPGVTRDRREGDATLIGLDFRVIDTAGF-ETD 65 Query: 282 DIVEKEGIKR--TFLEVENADLILLL 305 D G R T V AD+ L + Sbjct: 66 DPQTLPGRMRAQTQAAVREADVALFM 91 Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust. Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 8/93 (8%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-----YLVKISDTA 275 K+ I+G NAGKS+L N + + I G TRD + ID D +++ DTA Sbjct: 186 KLAIVGRPNAGKSTLINKILGEQRMITGPEAGITRDSIAIDWDWHAPDGTVRPIRLIDTA 245 Query: 276 GIR---ETDDIVEKEGIKRTFLEVENADLILLL 305 G+R + D +EK + V+ A++++LL Sbjct: 246 GMRKRAKVQDKLEKLSVADGLRAVDFAEVVVLL 278 >gi|323342077|ref|ZP_08082310.1| ribosome-associated GTPase EngA [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464502|gb|EFY09695.1| ribosome-associated GTPase EngA [Erysipelothrix rhusiopathiae ATCC 19414] Length = 436 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 3/84 (3%) Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI- 283 +G N GKSSL NA+ +D IV++I GTTRD + + I DTAGIR+ + Sbjct: 180 IGRPNVGKSSLVNAMLNQDRVIVSNIEGTTRDAIDTPFRMNERDYVIIDTAGIRKRGKVY 239 Query: 284 --VEKEGIKRTFLEVENADLILLL 305 VEK + R ++ +D++L L Sbjct: 240 EDVEKYSVLRAMSAIDRSDVVLFL 263 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 49/169 (28%), Positives = 76/169 (44%), Gaps = 30/169 (17%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKSSLFN + + ++IV D G TRD L ++ DT GI+ Sbjct: 6 VAIVGRPNVGKSSLFNRIMGERISIVHDEAGVTRDRLYGKTTWLTKDLRFIDTGGIQMEG 65 Query: 282 DIVEKEGIKRTFLEVENADLIL------------------LLKEINSKKEISFPKNIDFI 323 ++E + + ++ AD+IL LL++ N I+ K D Sbjct: 66 QPFQEEIKMQVDIAIDEADIILFVVSAKEGMTTDDEFIARLLRQTNKPVIIAANKVDDVQ 125 Query: 324 FIGTKSDLYSTYTEEYDH--LISSFTGEGLEELINKIKSILSNKFKKLP 370 F+ SD+Y Y YD +S G GL +L++++ KKLP Sbjct: 126 FV---SDIYEFYALGYDEPFAVSCEHGIGLGDLLDEV-------IKKLP 164 >gi|300022385|ref|YP_003754996.1| ribosome-associated GTPase EngA [Hyphomicrobium denitrificans ATCC 51888] gi|299524206|gb|ADJ22675.1| ribosome-associated GTPase EngA [Hyphomicrobium denitrificans ATCC 51888] Length = 460 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET- 280 + I+G N GKS+LFN L A+V+D+PG TRD DL G +++ DTAG+ E Sbjct: 2 VAIVGRPNVGKSTLFNRLTGTRAALVSDLPGLTRDRRDGVTDLFGVNLRLIDTAGLEEAR 61 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 + K+T +E ADL+L + Sbjct: 62 QGSIADRMRKQTEQAIEAADLVLFV 86 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 38/65 (58%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G NAGKS+L NAL +D I PG TRD + +L +G + + DTAG+R Sbjct: 195 RVAIVGRPNAGKSTLVNALLGEDRMITGPEPGLTRDSVASELSYKGQSILLFDTAGLRRK 254 Query: 281 DDIVE 285 I E Sbjct: 255 AKITE 259 >gi|212715828|ref|ZP_03323956.1| hypothetical protein BIFCAT_00729 [Bifidobacterium catenulatum DSM 16992] gi|212661195|gb|EEB21770.1| hypothetical protein BIFCAT_00729 [Bifidobacterium catenulatum DSM 16992] Length = 709 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/177 (27%), Positives = 80/177 (45%), Gaps = 19/177 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+L N + + A+V D PG TRD ++ D + G K+ DT G Sbjct: 275 LAVVGRPNVGKSTLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADV 334 Query: 282 DIVEKEGIKRTFLEVENADLILLLKE-----INSKKEI-----SFPKNIDFIFIGTKSDL 331 + +E + + V+ AD ++L+ + N+ + I S K + + + D Sbjct: 335 EGIESAIASQAQIAVQLADAVVLVVDGQVGLTNTDERIVKMLRSSGKPV-TLAVNKVDDR 393 Query: 332 YSTY-TEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380 S Y T E+ + IS+ G G+ EL++ L K F PSH R + Sbjct: 394 ESEYLTAEFWKMGLGEPYGISAMHGRGIGELLDAALESLKKAEKTSGFLTPSHLRRV 450 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 4/60 (6%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGIR 278 ++ ++G N GKSSL N LA ++ +V D+ GTTRD + + +D E +L DTAGI+ Sbjct: 449 RVALVGRPNVGKSSLLNQLAHEERTVVNDLAGTTRDPVDEVVTVDGEDWL--FIDTAGIK 506 >gi|255534810|ref|YP_003095181.1| GTP-binding protein EngA [Flavobacteriaceae bacterium 3519-10] gi|255341006|gb|ACU07119.1| GTP-binding protein EngA [Flavobacteriaceae bacterium 3519-10] Length = 436 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI I G N GKS+L NAL K IVTD+ GTTRD + + G+ + DTAG+R Sbjct: 177 KITIAGRPNVGKSTLTNALLDKQQNIVTDVAGTTRDSIQTLYNKFGHEFVLVDTAGMRRK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E + R+ +E +D+++++ Sbjct: 237 AKVKEDLEFYSVMRSIRSIEYSDVVIIM 264 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFN ++ AIV G TRD D G + DT G T Sbjct: 5 VAIVGRPNVGKSTLFNRFLERREAIVDSTAGVTRDRHYGKSDWNGVEFTVIDTGGYEVNT 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 +D+ ++E K+ L V+ A I+ + Sbjct: 65 EDVFQEEITKQVQLAVDEATSIIFM 89 >gi|320140353|gb|EFW32209.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus MRSA131] Length = 436 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSL NA+ +D IV+++ GTTRD + + +G + DTAG+R+ Sbjct: 177 RLSIIGRPNVGKSSLVNAILGEDRVIVSNVAGTTRDAIDTEYSYDGQDYVLIDTAGMRKK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + EK + R +E ++++L++ Sbjct: 237 GKVYESTEKYSVLRALKAIERSNVVLVV 264 Score = 43.9 bits (102), Expect = 0.050, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 44/84 (52%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN + + V+IV D PG TRD + + + I DT GI D Sbjct: 6 VAIVGRPNVGKSTIFNRIVGERVSIVEDTPGVTRDRIYSSGEWLTHDFNIIDTGGIEIGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + + + ++ A +I+ + Sbjct: 66 APFQTQIRAQAEIAIDEAYVIIFM 89 >gi|288573910|ref|ZP_06392267.1| small GTP-binding protein [Dethiosulfovibrio peptidovorans DSM 11002] gi|288569651|gb|EFC91208.1| small GTP-binding protein [Dethiosulfovibrio peptidovorans DSM 11002] Length = 407 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 49/151 (32%), Positives = 79/151 (52%), Gaps = 21/151 (13%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL--VKISDTAGIRE 279 +VI G N+GKSSL N L + +IV+D PGTT D + +++ G L V + DTAG + Sbjct: 12 LVIYGLRNSGKSSLTNNLLRTSASIVSDRPGTTTDPVIHAMEM-GPLGPVSVVDTAGFDD 70 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKE----INSKKEISFPK----NIDFIFIGTKSDL 331 DD + ++R+ ++E AD++L + +K+E + K N+ + + T +D Sbjct: 71 FDDELGSMRVERSERKLETADIVLFVTRGDIPPTAKEETAVEKLRRRNLPCLTVLTFAD- 129 Query: 332 YSTYTEEYDHLISSF--------TGEGLEEL 354 S +E H S F +G GLE+L Sbjct: 130 -SGVCDEKRHFASGFRRIAVDNRSGFGLEDL 159 >gi|19703515|ref|NP_603077.1| GTP-binding protein EngA [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|26006718|sp|Q8RGV7|DER_FUSNN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|19713605|gb|AAL94376.1| GTP-binding protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 440 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ ++G NAGKSSL N L+ ++ IV+DI GTTRD + ++ + I DTAGIR Sbjct: 178 KLAVIGKPNAGKSSLVNKLSGEERTIVSDIAGTTRDAIDTLIEYKDNKYMIIDTAGIRRK 237 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E + R ++ AD+ +L+ Sbjct: 238 SKVEESLEYYSVLRALKAIKRADVCILM 265 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/143 (32%), Positives = 70/143 (48%), Gaps = 13/143 (9%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 I I+G N GKS+LFN L +AIV D+PG TRD L D + G I DT G+ Sbjct: 5 IAIVGRPNVGKSTLFNNLVGDKIAIVDDLPGVTRDRLYRDTEWSGSEFVIVDTGGLEPRN 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISF---PKNIDFIFIGTKSDLY 332 +D + + ++ + + AD+IL + + S +EI++ KN I K D Sbjct: 65 NDFLMAKIKEQAEVAMNEADVILFVVDGKSGLNPLDEEIAYILRKKNKPVILCVNKID-- 122 Query: 333 STYTEEYDHLISSFTGEGLEELI 355 + E+ D + F G G E L+ Sbjct: 123 -NFFEQQDD-VYDFYGLGFEYLV 143 >gi|303284441|ref|XP_003061511.1| predicted protein [Micromonas pusilla CCMP1545] gi|226456841|gb|EEH54141.1| predicted protein [Micromonas pusilla CCMP1545] Length = 470 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 12/119 (10%) Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKI 271 GE + K+ I+G N GKSSL N L+ AIV+D GTTRD + D+ D +G + Sbjct: 193 GEEVAEPLKVAIVGRPNVGKSSLLNQLSGDARAIVSDHSGTTRDTIDSDVTDADGNKFTL 252 Query: 272 SDTAGIRETDDIV------EKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF 324 DTAGIR + E+ + R + A++++L+ I++++ P DF+ Sbjct: 253 IDTAGIRRRTAVAAGKDKPEELSVGRALQAMRRAEVVVLV--IDAEEG---PSQQDFVL 306 Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust. Identities = 19/40 (47%), Positives = 25/40 (62%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260 ++ I+G N GKS+LFN L AIV D PG TRD + + Sbjct: 5 RVAIVGRPNVGKSALFNRLTGTKRAIVYDQPGITRDRMYV 44 >gi|212212370|ref|YP_002303306.1| GTP-binding protein EngA [Coxiella burnetii CbuG_Q212] gi|238058972|sp|B6IZN3|DER_COXB2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|212010780|gb|ACJ18161.1| GTP-binding protein [Coxiella burnetii CbuG_Q212] Length = 443 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/90 (37%), Positives = 49/90 (54%), Gaps = 3/90 (3%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G KI ++G N GKS+L N L ++ IV D PGTTRD + I + DTAGIR Sbjct: 175 GIKIAMIGRPNVGKSTLINRLLGEERVIVYDQPGTTRDSIYIPFARNDENYTLIDTAGIR 234 Query: 279 ---ETDDIVEKEGIKRTFLEVENADLILLL 305 + D VEK + ++ + AD+++ L Sbjct: 235 RRAKIQDYVEKFSMIKSLQAMHAADVVIFL 264 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 31/86 (36%), Positives = 49/86 (56%), Gaps = 3/86 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS+LFN L K A+V D+PG TRD + ++ + + DT G+ +T+ Sbjct: 5 IAIVGRPNVGKSTLFNYLTKSRAALVADVPGVTRDRQYGETTIDSQRLLLVDTGGLVDTE 64 Query: 282 DIVEKEGIKRTFLE--VENADLILLL 305 + E + T +E ++ +D IL L Sbjct: 65 N-KEVAPLAETQVEQAIDESDCILFL 89 >gi|254302562|ref|ZP_04969920.1| possible GTPase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322754|gb|EDK88004.1| possible GTPase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 440 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ ++G NAGKSSL N L+ ++ IV+DI GTTRD + ++ + I DTAGIR Sbjct: 178 KLAVIGKPNAGKSSLVNKLSGEERTIVSDIAGTTRDAIDTLIEYKDNKYMIIDTAGIRRK 237 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E + R ++ AD+ +L+ Sbjct: 238 SKVEESLEYYSVLRALKAIKRADVCILM 265 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 46/143 (32%), Positives = 69/143 (48%), Gaps = 13/143 (9%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFN L +AIV D+PG TRD L D + G I DT G+ Sbjct: 5 VAIVGRPNVGKSTLFNNLVGDKIAIVDDLPGVTRDRLYRDTEWSGSEFVIVDTGGLEPRN 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISF---PKNIDFIFIGTKSDLY 332 +D + + ++ + + AD+IL + + S EI++ KN I K D Sbjct: 65 NDFLMAKIKEQAEVAMNEADVILFVVDGKSGLNPLDDEIAYILRKKNKPVILCVNKID-- 122 Query: 333 STYTEEYDHLISSFTGEGLEELI 355 + E+ D + F G G E L+ Sbjct: 123 -NFFEQQDD-VYDFYGLGFEYLV 143 >gi|302333085|gb|ADL23278.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus JKD6159] Length = 436 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSL NA+ +D IV+++ GTTRD + + +G + DTAG+R+ Sbjct: 177 RLSIIGRPNVGKSSLVNAILGEDRVIVSNVAGTTRDAIDTEYSYDGQDYVLIDTAGMRKK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + EK + R +E ++++L++ Sbjct: 237 GKVYESTEKYSVLRALKAIERSNVVLVV 264 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 41/158 (25%), Positives = 75/158 (47%), Gaps = 21/158 (13%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN + + V+IV D PG TRD + + + I DT GI D Sbjct: 6 VAIVGRPNVGKSTIFNRIVGERVSIVEDTPGVTRDRIYSSGEWLTHDFNIIDTGGIEIGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN----------------SKKEISFPKN-IDFIF 324 + + + + ++ AD+I+ + + SKK + N +D + Sbjct: 66 APFQTQIRAQAEIAIDEADVIIFMVNVREGLTQSDEMVAQILYKSKKPVVLAVNKVDNME 125 Query: 325 IGTKSDLYSTYTEEY--DHLISSFTGEGLEELINKIKS 360 + ++D+Y Y+ + + IS G GL +L++ + S Sbjct: 126 M--RTDVYDFYSLGFGEPYPISGSHGLGLGDLLDAVVS 161 >gi|57239243|ref|YP_180379.1| GTP-binding protein EngA [Ehrlichia ruminantium str. Welgevonden] gi|58579205|ref|YP_197417.1| GTP-binding protein EngA [Ehrlichia ruminantium str. Welgevonden] gi|57161322|emb|CAH58245.1| putative GTP binding protein EngA [Ehrlichia ruminantium str. Welgevonden] gi|58417831|emb|CAI27035.1| Probable GTP-binding protein engA [Ehrlichia ruminantium str. Welgevonden] Length = 439 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI I+G NAGKS+ N L +D IV+ PGTTRD + I+ + + + DTAG+R+ Sbjct: 175 KISIVGRPNAGKSTFVNRLVGEDRMIVSSEPGTTRDAVDIEYEYQDQKFILIDTAGMRKK 234 Query: 281 DDIVEKEGIKRTFLEVEN---ADLILLL 305 I E + + +E+ +D+I+L+ Sbjct: 235 AKITENIEVTSVYKSIESINRSDIIILM 262 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 37/104 (35%), Positives = 58/104 (55%), Gaps = 8/104 (7%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI--R 278 K+ I+G N GKS++FN L KK AIV+++P TRD DL G K+ DT G+ R Sbjct: 3 KVAIVGLPNVGKSTIFNRLVKKRSAIVSNVPNLTRDRREGSADLCGLKFKVIDTGGVDYR 62 Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF 322 ++ + +K L +E D+I + + +++I KNI+F Sbjct: 63 IKLSVLILDQVK---LAIEACDVIFFVVDARVERDI---KNIEF 100 >gi|25011707|ref|NP_736102.1| GTP-binding protein EngA [Streptococcus agalactiae NEM316] gi|41017045|sp|Q8E3T9|DER_STRA3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|24413247|emb|CAD47326.1| Unknown [Streptococcus agalactiae NEM316] Length = 436 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 74/145 (51%), Gaps = 31/145 (21%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID-LDLEGYLVKISDTAGIRETDD 282 ++G N GKSSL NA+ +D I + + GTTRD + + +D +G + DTAG+R++ Sbjct: 179 LIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTNFVDSQGQEYTMIDTAGMRKSGK 238 Query: 283 I---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY 339 + EK + R+ ++ +D++L++ IN+++ I EY Sbjct: 239 VYENTEKYSVMRSMRAIDRSDVVLMV--INAEEGI----------------------REY 274 Query: 340 DHLISSF---TGEGLEELINKIKSI 361 D I+ F G+G+ ++NK +I Sbjct: 275 DKRIAGFAHEAGKGIIIVVNKWDTI 299 Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 45/84 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN +A + ++IV D+ G TRD + + + DT GI + D Sbjct: 6 VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTTGEWLNRKFSLIDTGGIDDVD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + + + AD+I+ + Sbjct: 66 APFMEQIKHQADIAMTEADVIVFV 89 >gi|15924465|ref|NP_371999.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus Mu50] gi|15927056|ref|NP_374589.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus N315] gi|21283093|ref|NP_646181.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus MW2] gi|49483662|ref|YP_040886.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus MRSA252] gi|49486314|ref|YP_043535.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus MSSA476] gi|57650430|ref|YP_186359.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus COL] gi|88195209|ref|YP_500010.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148267959|ref|YP_001246902.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus JH9] gi|150394023|ref|YP_001316698.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus JH1] gi|151221596|ref|YP_001332418.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus str. Newman] gi|156979794|ref|YP_001442053.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus Mu3] gi|221140958|ref|ZP_03565451.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253315982|ref|ZP_04839195.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253732117|ref|ZP_04866282.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253733278|ref|ZP_04867443.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus TCH130] gi|255006261|ref|ZP_05144862.2| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257425539|ref|ZP_05601964.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus 55/2053] gi|257428198|ref|ZP_05604596.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus 65-1322] gi|257430828|ref|ZP_05607210.1| small GTP-binding protein [Staphylococcus aureus subsp. aureus 68-397] gi|257433587|ref|ZP_05609945.1| GTP-binding protein engA [Staphylococcus aureus subsp. aureus E1410] gi|257436428|ref|ZP_05612475.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus M876] gi|257795470|ref|ZP_05644449.1| ribosome-associated GTPase EngA [Staphylococcus aureus A9781] gi|258413278|ref|ZP_05681554.1| small GTP-binding protein [Staphylococcus aureus A9763] gi|258420615|ref|ZP_05683557.1| ribosome-associated GTPase EngA [Staphylococcus aureus A9719] gi|258422494|ref|ZP_05685402.1| ribosome-associated GTPase EngA [Staphylococcus aureus A9635] gi|258426810|ref|ZP_05688030.1| GTP-binding protein engA [Staphylococcus aureus A9299] gi|258444808|ref|ZP_05693137.1| GTP-binding protein engA [Staphylococcus aureus A8115] gi|258447358|ref|ZP_05695502.1| small GTP-binding protein [Staphylococcus aureus A6300] gi|258449757|ref|ZP_05697858.1| GTP-binding protein engA [Staphylococcus aureus A6224] gi|258451133|ref|ZP_05699168.1| GTP-binding protein engA [Staphylococcus aureus A5948] gi|258454573|ref|ZP_05702537.1| ribosome-associated GTPase EngA [Staphylococcus aureus A5937] gi|262048997|ref|ZP_06021876.1| GTP-binding protein EngA [Staphylococcus aureus D30] gi|262051644|ref|ZP_06023864.1| GTP-binding protein EngA [Staphylococcus aureus 930918-3] gi|269203100|ref|YP_003282369.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus ED98] gi|282892972|ref|ZP_06301207.1| ribosome-associated GTPase EngA [Staphylococcus aureus A8117] gi|282904057|ref|ZP_06311945.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus C160] gi|282905821|ref|ZP_06313676.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus Btn1260] gi|282911052|ref|ZP_06318854.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus WBG10049] gi|282914265|ref|ZP_06322052.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus M899] gi|282919188|ref|ZP_06326923.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus C427] gi|282921722|ref|ZP_06329439.1| ribosome-associated GTPase EngA [Staphylococcus aureus A9765] gi|282924372|ref|ZP_06332046.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus C101] gi|282928003|ref|ZP_06335612.1| ribosome-associated GTPase EngA [Staphylococcus aureus A10102] gi|283958239|ref|ZP_06375690.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus A017934/97] gi|284024473|ref|ZP_06378871.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus 132] gi|293501290|ref|ZP_06667141.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus 58-424] gi|293510252|ref|ZP_06668960.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus M809] gi|293526847|ref|ZP_06671531.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus M1015] gi|295407224|ref|ZP_06817024.1| ribosome-associated GTPase EngA [Staphylococcus aureus A8819] gi|295427983|ref|ZP_06820615.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus EMRSA16] gi|296275328|ref|ZP_06857835.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus MR1] gi|297207866|ref|ZP_06924299.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297244648|ref|ZP_06928531.1| ribosome-associated GTPase EngA [Staphylococcus aureus A8796] gi|300911951|ref|ZP_07129394.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus TCH70] gi|304380942|ref|ZP_07363601.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|54037051|sp|P64060|DER_STAAN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|54037052|sp|P64061|DER_STAAW RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|54040975|sp|P64059|DER_STAAM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|56748972|sp|Q6G988|DER_STAAS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|56749026|sp|Q6GGT6|DER_STAAR RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|71151865|sp|Q5HFU8|DER_STAAC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|122539535|sp|Q2FYG0|DER_STAA8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|166225860|sp|A7X2I1|DER_STAA1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|172048892|sp|A6QH24|DER_STAAE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|189037164|sp|A6U1U3|DER_STAA2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|189037165|sp|A5IT03|DER_STAA9 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|13701274|dbj|BAB42568.1| SA1307 [Staphylococcus aureus subsp. aureus N315] gi|14247246|dbj|BAB57637.1| GTP-binding protein [Staphylococcus aureus subsp. aureus Mu50] gi|21204533|dbj|BAB95229.1| MW1364 [Staphylococcus aureus subsp. aureus MW2] gi|49241791|emb|CAG40482.1| putative GTPase [Staphylococcus aureus subsp. aureus MRSA252] gi|49244757|emb|CAG43193.1| putative GTPase [Staphylococcus aureus subsp. aureus MSSA476] gi|57284616|gb|AAW36710.1| GTP-binding protein, Era/TrmE family [Staphylococcus aureus subsp. aureus COL] gi|87202767|gb|ABD30577.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147741028|gb|ABQ49326.1| small GTP-binding protein [Staphylococcus aureus subsp. aureus JH9] gi|149946475|gb|ABR52411.1| small GTP-binding protein [Staphylococcus aureus subsp. aureus JH1] gi|150374396|dbj|BAF67656.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus str. Newman] gi|156721929|dbj|BAF78346.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|253724164|gb|EES92893.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253728818|gb|EES97547.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus TCH130] gi|257271996|gb|EEV04134.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus 55/2053] gi|257275039|gb|EEV06526.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus 65-1322] gi|257278956|gb|EEV09575.1| small GTP-binding protein [Staphylococcus aureus subsp. aureus 68-397] gi|257281680|gb|EEV11817.1| GTP-binding protein engA [Staphylococcus aureus subsp. aureus E1410] gi|257284710|gb|EEV14830.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus M876] gi|257789442|gb|EEV27782.1| ribosome-associated GTPase EngA [Staphylococcus aureus A9781] gi|257839842|gb|EEV64310.1| small GTP-binding protein [Staphylococcus aureus A9763] gi|257843563|gb|EEV67970.1| ribosome-associated GTPase EngA [Staphylococcus aureus A9719] gi|257847251|gb|EEV71257.1| ribosome-associated GTPase EngA [Staphylococcus aureus A9635] gi|257849971|gb|EEV73929.1| GTP-binding protein engA [Staphylococcus aureus A9299] gi|257850301|gb|EEV74254.1| GTP-binding protein engA [Staphylococcus aureus A8115] gi|257853549|gb|EEV76508.1| small GTP-binding protein [Staphylococcus aureus A6300] gi|257857005|gb|EEV79905.1| GTP-binding protein engA [Staphylococcus aureus A6224] gi|257861188|gb|EEV84001.1| GTP-binding protein engA [Staphylococcus aureus A5948] gi|257862956|gb|EEV85720.1| ribosome-associated GTPase EngA [Staphylococcus aureus A5937] gi|259160485|gb|EEW45509.1| GTP-binding protein EngA [Staphylococcus aureus 930918-3] gi|259162929|gb|EEW47492.1| GTP-binding protein EngA [Staphylococcus aureus D30] gi|262075390|gb|ACY11363.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus ED98] gi|269940966|emb|CBI49350.1| putative GTPase [Staphylococcus aureus subsp. aureus TW20] gi|282313759|gb|EFB44152.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus C101] gi|282316998|gb|EFB47372.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus C427] gi|282322333|gb|EFB52657.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus M899] gi|282324747|gb|EFB55057.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus WBG10049] gi|282331113|gb|EFB60627.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus Btn1260] gi|282590300|gb|EFB95380.1| ribosome-associated GTPase EngA [Staphylococcus aureus A10102] gi|282593984|gb|EFB98973.1| ribosome-associated GTPase EngA [Staphylococcus aureus A9765] gi|282595675|gb|EFC00639.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus C160] gi|282764969|gb|EFC05094.1| ribosome-associated GTPase EngA [Staphylococcus aureus A8117] gi|283470686|emb|CAQ49897.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus ST398] gi|283790388|gb|EFC29205.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus A017934/97] gi|285817155|gb|ADC37642.1| GTP-binding protein EngA [Staphylococcus aureus 04-02981] gi|290920405|gb|EFD97469.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus M1015] gi|291096295|gb|EFE26556.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus 58-424] gi|291467196|gb|EFF09714.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus M809] gi|294967937|gb|EFG43966.1| ribosome-associated GTPase EngA [Staphylococcus aureus A8819] gi|295128341|gb|EFG57975.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus EMRSA16] gi|296887440|gb|EFH26340.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297178678|gb|EFH37924.1| ribosome-associated GTPase EngA [Staphylococcus aureus A8796] gi|298694764|gb|ADI97986.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus ED133] gi|300886197|gb|EFK81399.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus TCH70] gi|302751305|gb|ADL65482.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340528|gb|EFM06463.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312438122|gb|ADQ77193.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus TCH60] gi|312829865|emb|CBX34707.1| small GTP-binding domain protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129191|gb|EFT85186.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus CGS03] gi|315195372|gb|EFU25759.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus CGS00] gi|323439522|gb|EGA97243.1| GTP-binding protein EngA [Staphylococcus aureus O11] gi|323442239|gb|EGA99870.1| GTP-binding protein EngA [Staphylococcus aureus O46] gi|329314151|gb|AEB88564.1| GTP-binding protein engA [Staphylococcus aureus subsp. aureus T0131] gi|329723199|gb|EGG59730.1| ribosome biogenesis GTPase Der [Staphylococcus aureus subsp. aureus 21189] gi|329727642|gb|EGG64098.1| ribosome biogenesis GTPase Der [Staphylococcus aureus subsp. aureus 21172] gi|329731317|gb|EGG67683.1| ribosome biogenesis GTPase Der [Staphylococcus aureus subsp. aureus 21193] Length = 436 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSL NA+ +D IV+++ GTTRD + + +G + DTAG+R+ Sbjct: 177 RLSIIGRPNVGKSSLVNAILGEDRVIVSNVAGTTRDAIDTEYSYDGQDYVLIDTAGMRKK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + EK + R +E ++++L++ Sbjct: 237 GKVYESTEKYSVLRALKAIERSNVVLVV 264 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 41/158 (25%), Positives = 75/158 (47%), Gaps = 21/158 (13%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN + + V+IV D PG TRD + + + I DT GI D Sbjct: 6 VAIVGRPNVGKSTIFNRIVGERVSIVEDTPGVTRDRIYSSGEWLTHDFNIIDTGGIEIGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN----------------SKKEISFPKN-IDFIF 324 + + + + ++ AD+I+ + + SKK + N +D + Sbjct: 66 APFQTQIRAQAEIAIDEADVIIFMVNVREGLTQSDEMVAQILYKSKKPVVLAVNKVDNME 125 Query: 325 IGTKSDLYSTYTEEY--DHLISSFTGEGLEELINKIKS 360 + ++D+Y Y+ + + IS G GL +L++ + S Sbjct: 126 M--RTDVYDFYSLGFGEPYPISGSHGLGLGDLLDAVVS 161 >gi|332977201|gb|EGK13997.1| ribosome-associated GTPase EngA [Desmospora sp. 8437] Length = 455 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSL N + ++ IV+ + GTTRD + EG I DTAG+R+ Sbjct: 193 RVSIIGRPNVGKSSLVNRILGEERVIVSPVAGTTRDAVDTPFTHEGQDYVIVDTAGMRKR 252 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + EK + R +E AD++L++ Sbjct: 253 GKVYETTEKYSVLRALRAIERADVVLIV 280 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/87 (39%), Positives = 51/87 (58%), Gaps = 5/87 (5%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--E 279 + I+G N GKS+LFN +A + +AIV D PG TRD + D G + DT G+ + Sbjct: 21 VAIVGRPNVGKSTLFNRIAGERIAIVEDKPGITRDRIYTRGDWSGRHFHVIDTGGLEFGK 80 Query: 280 TDDIVEKEGIK-RTFLEVENADLILLL 305 D++VE I+ + L +E AD+IL + Sbjct: 81 KDEVVEH--IRHQAELAIEEADVILFM 105 >gi|320534114|ref|ZP_08034655.1| ribosome-associated GTPase EngA [Actinomyces sp. oral taxon 171 str. F0337] gi|320133693|gb|EFW26100.1| ribosome-associated GTPase EngA [Actinomyces sp. oral taxon 171 str. F0337] Length = 734 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 69/122 (56%), Gaps = 11/122 (9%) Query: 189 SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVT 248 S EVL+ ++ + ++S+ + G++ ++I ++G N GKSSL N++A ++ +V Sbjct: 446 SGEVLDAVMEILPEVSAVAAAAPEGDL----HRIALVGRPNVGKSSLLNSIAGRERVVVN 501 Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEG-----IKRTFLEVENADLIL 303 + GTTRD + ++L+G DTAGIR + + G + RT ++NA++ + Sbjct: 502 ETAGTTRDPVDEIIELDGRQWVFVDTAGIRRR--VKQSRGADYYAVLRTQGAIDNAEVAV 559 Query: 304 LL 305 +L Sbjct: 560 VL 561 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 35/127 (27%), Positives = 62/127 (48%), Gaps = 3/127 (2%) Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKL--GEIIRNGYKIV-ILGHSNAGKSSLFNA 238 ED++ + + L D + D++ + G L G+ + G ++ ++G N GKS+L N Sbjct: 257 EDLRAQAMRAGLADYELDEEDLALLEADGGLPTGDSVEPGLPVLAVVGRPNVGKSTLVNR 316 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 + + A+V D PG TRD ++ + G I DT G ++ + + VE Sbjct: 317 VLGRREAVVQDTPGVTRDRVSYPAEWAGRRFTIVDTGGWEVDVAGLDAAVATQAEIAVEM 376 Query: 299 ADLILLL 305 AD +LL+ Sbjct: 377 ADAVLLV 383 >gi|238019393|ref|ZP_04599819.1| hypothetical protein VEIDISOL_01257 [Veillonella dispar ATCC 17748] gi|237864092|gb|EEP65382.1| hypothetical protein VEIDISOL_01257 [Veillonella dispar ATCC 17748] Length = 444 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 3/87 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFNA+ K ++IV DIPG TRD + D + + DT GI Sbjct: 6 VAVVGRPNVGKSTLFNAIVNKRISIVEDIPGVTRDRIYFDAEWLNREFTMIDTGGIEFIT 65 Query: 282 D---IVEKEGIKRTFLEVENADLILLL 305 D ++ K + L +E AD+IL + Sbjct: 66 DNSHVIPKMMRLQAELAIEEADVILFV 92 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 3/87 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKSSL NAL +D IV+D+ GTTRD + + DTAG+R Sbjct: 181 VAVIGRPNVGKSSLTNALLGQDRVIVSDVAGTTRDSIDTYWTHGDQKFVLIDTAGMRRKS 240 Query: 282 DI---VEKEGIKRTFLEVENADLILLL 305 I VE+ I R+ V+ +D+++L+ Sbjct: 241 KIEEAVERYSIVRSLRSVDRSDIVVLV 267 >gi|218459464|ref|ZP_03499555.1| GTP-binding protein EngA [Rhizobium etli Kim 5] Length = 191 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 73/157 (46%), Gaps = 18/157 (11%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 + + I+G N GKS+LFN L K +A+V D PG TRD + L G I DTAG+ E Sbjct: 3 FTVAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGEARLMGLNFTIIDTAGLEE 62 Query: 280 TD-DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330 D + ++ +T ++ ADL L + + + E+ + + + KS+ Sbjct: 63 ADEESLQGRMRAQTEAAIDEADLSLFVVDAKNGLTPVDTALAEMLRRRGKPVVLVANKSE 122 Query: 331 LYSTYTEEYDHL---------ISSFTGEGLEELINKI 358 + + YD IS+ GEG+ +L + I Sbjct: 123 ARGSDSGFYDAYTLGLGEPKPISAEHGEGMLDLRDAI 159 >gi|223933730|ref|ZP_03625704.1| small GTP-binding protein [Streptococcus suis 89/1591] gi|302024351|ref|ZP_07249562.1| GTP-binding protein EngA [Streptococcus suis 05HAS68] gi|330833346|ref|YP_004402171.1| GTP-binding protein EngA [Streptococcus suis ST3] gi|223897611|gb|EEF63998.1| small GTP-binding protein [Streptococcus suis 89/1591] gi|329307569|gb|AEB81985.1| GTP-binding protein EngA [Streptococcus suis ST3] Length = 436 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 49/179 (27%), Positives = 81/179 (45%), Gaps = 33/179 (18%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRE 279 K ++G N GKSSL NA+ ++ I + + GTTRD + D EG + DTAG+R+ Sbjct: 176 KFSLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAIDTHFTDPEGQEFTMIDTAGMRK 235 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336 + + EK + R +E +D+IL++ IN+++ I Sbjct: 236 SGKVYENTEKYSVMRAMRAIERSDVILMV--INAEEGI---------------------- 271 Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL 395 EYD I+ F E + +I I+ NK+ L + K+ + +YL A + Sbjct: 272 REYDKRIAGFAHEAGKGMI-----IVVNKWDTLEKDNHTMKKWEDDIRDQFQYLSYAPI 325 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS+LFN +A + ++IV D+ G TRD + + + DT GI + D Sbjct: 6 IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRKFSLIDTGGIDDVD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + + ++ AD+I+ + Sbjct: 66 APFMEQIKHQAEIAMDEADVIVFV 89 >gi|296875953|ref|ZP_06900012.1| ribosome-associated GTPase EngA [Streptococcus parasanguinis ATCC 15912] gi|312868488|ref|ZP_07728688.1| ribosome biogenesis GTPase Der [Streptococcus parasanguinis F0405] gi|322390089|ref|ZP_08063624.1| ribosome-associated GTPase EngA [Streptococcus parasanguinis ATCC 903] gi|296433028|gb|EFH18816.1| ribosome-associated GTPase EngA [Streptococcus parasanguinis ATCC 15912] gi|311096233|gb|EFQ54477.1| ribosome biogenesis GTPase Der [Streptococcus parasanguinis F0405] gi|321143216|gb|EFX38659.1| ribosome-associated GTPase EngA [Streptococcus parasanguinis ATCC 903] Length = 436 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 72/148 (48%), Gaps = 31/148 (20%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRE 279 K ++G N GKSSL NA+ +D I + + GTTRD + D +G + DTAG+R+ Sbjct: 176 KFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDADGQEFTMIDTAGMRK 235 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336 + I EK + R ++ +D++L++ IN+++ I Sbjct: 236 SGKIYENTEKYSVMRAMRAIDRSDVVLMV--INAEEGI---------------------- 271 Query: 337 EEYDHLISSF---TGEGLEELINKIKSI 361 EYD I+ F G+G+ ++NK +I Sbjct: 272 REYDKRIAGFAHEAGKGMIIVVNKWDTI 299 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS+LFN +A + ++IV D+ G TRD + + I DT GI + D Sbjct: 6 IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATAEWLNRKFSIIDTGGIDDVD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + + ++ AD+I+ + Sbjct: 66 APFMEQIKHQAEIAMDEADVIVFV 89 >gi|168035467|ref|XP_001770231.1| predicted protein [Physcomitrella patens subsp. patens] gi|162678448|gb|EDQ64906.1| predicted protein [Physcomitrella patens subsp. patens] Length = 542 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 7/91 (7%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRET 280 I I+G N GKSS+ NAL ++ IV+ + GTTRD + + D G +K+ DTAGIR Sbjct: 241 IAIVGKPNVGKSSILNALVGEERTIVSPVSGTTRDAIDTEFADDNGQTLKLIDTAGIRRR 300 Query: 281 DDI------VEKEGIKRTFLEVENADLILLL 305 + E + R F + +D++ L+ Sbjct: 301 GAVASAGSRAESLSVNRAFRAIRRSDVVALV 331 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 32/57 (56%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 KI I+G N GKS+LFN +A D+AIV D G TRD L + + DT G+ Sbjct: 37 KIAIVGRPNVGKSALFNRIAGGDIAIVHDEAGVTRDRLYTRAFWSTHEFMLVDTGGV 93 >gi|126658269|ref|ZP_01729419.1| GTP-binding protein EngA [Cyanothece sp. CCY0110] gi|126620418|gb|EAZ91137.1| GTP-binding protein EngA [Cyanothece sp. CCY0110] Length = 452 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/92 (36%), Positives = 49/92 (53%), Gaps = 3/92 (3%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R + I+G N GKSSL NA + AIV+ I GTTRD + ++ ++ DTAG Sbjct: 174 REEINVSIIGRPNVGKSSLLNAFLGEQRAIVSPISGTTRDTIDTVVERGENTYRLIDTAG 233 Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLL 305 IR ++ E I R F + AD++LL+ Sbjct: 234 IRRKKNVNYGAEFFSINRAFKAIRRADVVLLV 265 Score = 43.1 bits (100), Expect = 0.089, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 31/61 (50%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+L N LAK AIV D PG TRD ++ DT G+ D Sbjct: 6 VAIIGRPNVGKSTLVNRLAKDRQAIVHDQPGITRDRTYRPAFWRDRDFQVVDTGGLVFDD 65 Query: 282 D 282 D Sbjct: 66 D 66 >gi|29654548|ref|NP_820240.1| GTP-binding protein EngA [Coxiella burnetii RSA 493] gi|153208833|ref|ZP_01947057.1| GTP-binding protein EngA [Coxiella burnetii 'MSU Goat Q177'] gi|154706295|ref|YP_001424682.1| GTP-binding protein EngA [Coxiella burnetii Dugway 5J108-111] gi|161830868|ref|YP_001597096.1| GTP-binding protein EngA [Coxiella burnetii RSA 331] gi|165921454|ref|ZP_02219642.1| GTP-binding protein EngA [Coxiella burnetii RSA 334] gi|212218660|ref|YP_002305447.1| GTP-binding protein EngA [Coxiella burnetii CbuK_Q154] gi|41017032|sp|Q83C83|DER_COXBU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|189037144|sp|A9KFU3|DER_COXBN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|189037145|sp|A9NDV6|DER_COXBR RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|238058971|sp|B6J7Q3|DER_COXB1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|29541815|gb|AAO90754.1| GTP-binding protein [Coxiella burnetii RSA 493] gi|120575684|gb|EAX32308.1| GTP-binding protein EngA [Coxiella burnetii 'MSU Goat Q177'] gi|154355581|gb|ABS77043.1| GTP-binding protein [Coxiella burnetii Dugway 5J108-111] gi|161762735|gb|ABX78377.1| GTP-binding protein EngA [Coxiella burnetii RSA 331] gi|165916769|gb|EDR35373.1| GTP-binding protein EngA [Coxiella burnetii RSA 334] gi|212012922|gb|ACJ20302.1| GTP-binding protein [Coxiella burnetii CbuK_Q154] Length = 443 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/90 (37%), Positives = 49/90 (54%), Gaps = 3/90 (3%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G KI ++G N GKS+L N L ++ IV D PGTTRD + I + DTAGIR Sbjct: 175 GIKIAMIGRPNVGKSTLINRLLGEERVIVYDQPGTTRDSIYIPFARNDENYTLIDTAGIR 234 Query: 279 ---ETDDIVEKEGIKRTFLEVENADLILLL 305 + D VEK + ++ + AD+++ L Sbjct: 235 RRAKIQDYVEKFSMIKSLQAMHAADVVIFL 264 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 31/86 (36%), Positives = 49/86 (56%), Gaps = 3/86 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS+LFN L K A+V D+PG TRD + ++ + + DT G+ +T+ Sbjct: 5 IAIVGRPNVGKSTLFNYLTKSRAALVADVPGVTRDRQYGETTIDSQRLLLVDTGGLVDTE 64 Query: 282 DIVEKEGIKRTFLE--VENADLILLL 305 + E + T +E ++ +D IL L Sbjct: 65 N-KEVAPLAETQVEQAIDESDCILFL 89 >gi|199598702|ref|ZP_03212116.1| GTP-binding protein EngA [Lactobacillus rhamnosus HN001] gi|229552181|ref|ZP_04440906.1| GTP-binding protein EngA [Lactobacillus rhamnosus LMS2-1] gi|258508385|ref|YP_003171136.1| GTP-binding protein EngA [Lactobacillus rhamnosus GG] gi|258539596|ref|YP_003174095.1| GTP-binding protein EngA [Lactobacillus rhamnosus Lc 705] gi|199590390|gb|EDY98482.1| GTP-binding protein EngA [Lactobacillus rhamnosus HN001] gi|229314483|gb|EEN80456.1| GTP-binding protein EngA [Lactobacillus rhamnosus LMS2-1] gi|257148312|emb|CAR87285.1| GTP-binding protein EngA [Lactobacillus rhamnosus GG] gi|257151272|emb|CAR90244.1| GTP-binding protein EngA [Lactobacillus rhamnosus Lc 705] gi|259649699|dbj|BAI41861.1| GTP-binding protein EngA [Lactobacillus rhamnosus GG] Length = 435 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/97 (34%), Positives = 55/97 (56%), Gaps = 5/97 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K ++G N GKSSL NA+ ++ IV+ I GTTRD + + +G + DTAGIR+ Sbjct: 176 KFSLIGRPNVGKSSLVNAILGENRVIVSPIEGTTRDAIDTKFEADGETFTMIDTAGIRKR 235 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEI 314 + EK + R ++ +D++L + IN+++ I Sbjct: 236 GKVYENTEKYAVMRALRAIDRSDVVLFV--INAEEGI 270 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 47/89 (52%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN + + V+IV D PG TRD + + G + DT GI D Sbjct: 6 LAIVGRPNVGKSTIFNRILGERVSIVEDTPGVTRDRIYGKSEWLGKEFAVIDTGGIDLGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310 + + + + ++ AD+IL L I + Sbjct: 66 EPFLAQIKDQAEIAIDEADVILFLTSIEA 94 >gi|187931320|ref|YP_001891304.1| GTP-binding protein EngA [Francisella tularensis subsp. mediasiatica FSC147] gi|238691534|sp|B2SF94|DER_FRATM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|187712229|gb|ACD30526.1| GTP-binding protein [Francisella tularensis subsp. mediasiatica FSC147] Length = 465 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/102 (29%), Positives = 61/102 (59%), Gaps = 5/102 (4%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R+G ++G N GKS+L N + +D +V D+PGTT D ++I + G I DTAG Sbjct: 181 RHGIHFSLIGRPNVGKSTLTNRMLGEDRVVVFDMPGTTIDSVSIPFERHGQKYTIVDTAG 240 Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 +R+ + +EK + +T ++++++++ + +++++ IS Sbjct: 241 VRKRGKVKQTLEKFSVIKTLQAIQDSNVVVAV--VDARQGIS 280 Score = 43.9 bits (102), Expect = 0.050, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 10/89 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-----VLTIDLDLEGYLVKISDTAG 276 + I+G +N GKS+LFN L A+V D G TRD DLD YLV DT G Sbjct: 5 VAIVGRANVGKSTLFNVLTNSHDALVFDFEGVTRDRQYGQAKYDDLD---YLV--VDTGG 59 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL 305 I + D ++ K++ + ++ A+L+ + Sbjct: 60 ISDKDVGFDEFMAKQSQIAIDEANLVFFV 88 >gi|329770413|ref|ZP_08261795.1| GTP-binding protein engA [Gemella sanguinis M325] gi|328836536|gb|EGF86196.1| GTP-binding protein engA [Gemella sanguinis M325] Length = 435 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 3/85 (3%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 ++G N GKSSL N + K+ I ++I GTTRD + D G + DTAGIR+ + Sbjct: 179 LIGRPNVGKSSLINTILGKERVIASEIAGTTRDAIDTDFKYNGDEYVVIDTAGIRKRGKV 238 Query: 284 ---VEKEGIKRTFLEVENADLILLL 305 EK + R+ +E +D++L++ Sbjct: 239 YENCEKYSVLRSLKAIERSDVVLVV 263 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 45/84 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN + ++IV D+ G TRD + + Y + DT GI D Sbjct: 6 VAIIGRPNVGKSTIFNKIIGDRLSIVEDVAGVTRDRIYSKAEWLNYSFFMIDTGGIELED 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 +K+ + L ++ AD+I+ L Sbjct: 66 TPFQKQIRAQAELAIDEADVIIFL 89 >gi|307103139|gb|EFN51402.1| hypothetical protein CHLNCDRAFT_37436 [Chlorella variabilis] Length = 540 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 42/87 (48%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+LFN + + VAIV D PG TRD L + + DT G+ Sbjct: 103 KVAIVGRPNVGKSALFNRIVGRQVAIVYDYPGVTRDRLYTRAFWGDHEFLLVDTGGLMSD 162 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE 307 + + KE R FL N L + Sbjct: 163 AEKLPKEQQARPFLPAANPACRAFLPQ 189 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/65 (44%), Positives = 42/65 (64%), Gaps = 1/65 (1%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRE 279 ++ I+G N GKSSL NAL ++ +IV+ + GTTRD + DL L +G K+ DTAG+R+ Sbjct: 275 EVAIIGRPNVGKSSLLNALVGEERSIVSSMAGTTRDAIDTDLVLTDGSKFKLVDTAGVRK 334 Query: 280 TDDIV 284 I Sbjct: 335 RTAIA 339 >gi|328544034|ref|YP_004304143.1| GTP-binding protein engA [polymorphum gilvum SL003B-26A1] gi|326413778|gb|ADZ70841.1| GTP-binding protein engA [Polymorphum gilvum SL003B-26A1] Length = 472 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/114 (34%), Positives = 59/114 (51%), Gaps = 6/114 (5%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G + I+G N GKS+LFN L K +A+V D PG TRD + L + DTAG+ Sbjct: 2 GATVAIIGRPNVGKSTLFNRLVGKRLALVDDTPGVTRDRRPGEARLGDLRFTVIDTAGL- 60 Query: 279 ETDDIVEKEGIKRTFLE--VENADLILLLKEINSKKEISFPKNIDFIFIGTKSD 330 E D EG R E + AD++L + I+++ ++ P + F + +SD Sbjct: 61 EDADATSLEGRMRAQTEEAIAEADVVLFV--IDARSGVT-PLDSHFAEVARRSD 111 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 38/66 (57%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G NAGKS+L N + ++ + G TRD +++D + VK+ DTAGIR Sbjct: 203 RVAIVGRPNAGKSTLINRMIGEERMLTGPEAGITRDSISVDWLWRDHHVKLFDTAGIRRK 262 Query: 281 DDIVEK 286 + EK Sbjct: 263 ARVQEK 268 >gi|297591047|ref|ZP_06949685.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus MN8] gi|297575933|gb|EFH94649.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus MN8] Length = 436 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSL NA+ +D IV+++ GTTRD + + +G + DTAG+R+ Sbjct: 177 RLSIIGRPNVGKSSLVNAILGEDRVIVSNVAGTTRDAIDTEYSYDGQDYVLIDTAGMRKK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + EK + R +E ++++L++ Sbjct: 237 GKVYESTEKYSVLRALKAIERSNVVLVV 264 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 41/158 (25%), Positives = 75/158 (47%), Gaps = 21/158 (13%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN + + V+IV D PG TRD + + + I DT GI D Sbjct: 6 VAIVGRPNVGKSTIFNRIVGERVSIVEDTPGVTRDRIYSSGEWLTHDFNIIDTGGIEIGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN----------------SKKEISFPKN-IDFIF 324 + + + + ++ AD+I+ + + SKK + N +D + Sbjct: 66 APFQTQIRAQAEIAIDEADVIIFMVNVREGLTQSDEMVAQILYKSKKPVVLAVNKVDNME 125 Query: 325 IGTKSDLYSTYTEEY--DHLISSFTGEGLEELINKIKS 360 + ++D+Y Y+ + + IS G GL +L++ + S Sbjct: 126 M--RTDVYDFYSLGFGEPYPISGAHGLGLGDLLDAVVS 161 >gi|168703924|ref|ZP_02736201.1| probable GTP-binding protein [Gemmata obscuriglobus UQM 2246] Length = 495 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 50/85 (58%), Gaps = 3/85 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G NAGKS+ N+LA + IV++IPGTTRD + + ++ +G DTAG+R+T Sbjct: 180 LAIVGRRNAGKSTFINSLAGGERVIVSEIPGTTRDSVDVRIERDGKSYVAIDTAGVRKTA 239 Query: 282 DI---VEKEGIKRTFLEVENADLIL 303 + +E R V AD+++ Sbjct: 240 KMGTNIEFYSNHRAQRSVRRADVVM 264 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 34/56 (60%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 + I+G N GKSSLFN LA + ++IV G TRD ++ ++ G + + DT GI Sbjct: 6 VAIVGRPNVGKSSLFNWLAGRRISIVDPTAGVTRDRVSTVVEHGGRVWDLMDTGGI 61 >gi|147785731|emb|CAN73088.1| hypothetical protein VITISV_030762 [Vitis vinifera] Length = 344 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 7/93 (7%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAGIRE- 279 I I+G N GKSS+ NAL +D IV+ + GTTRD + + +G ++ DTAGIR Sbjct: 54 IAIVGRPNVGKSSILNALVGEDRTIVSPVSGTTRDAIDTEFTGPDGQKYRLIDTAGIRRR 113 Query: 280 -----TDDIVEKEGIKRTFLEVENADLILLLKE 307 + E + R F + +D++ L+ E Sbjct: 114 AAVASSGSTTEALSVNRAFRAIRRSDVVALVIE 146 >gi|150021499|ref|YP_001306853.1| GTP-binding protein EngA [Thermosipho melanesiensis BI429] gi|166225930|sp|A6LNG7|DER_THEM4 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|149794020|gb|ABR31468.1| small GTP-binding protein [Thermosipho melanesiensis BI429] Length = 437 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 54/90 (60%), Gaps = 6/90 (6%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ ++G NAGKS+LFN + +++ A+VT IPGTTRD + +++ G DTAG+R Sbjct: 181 RVALIGRPNAGKSTLFNGILERERALVTPIPGTTRDAIDELVEINGKKYLFIDTAGLRRK 240 Query: 281 DDIVEKEGIK-----RTFLEVENADLILLL 305 VE + I R+ +E +D+++ + Sbjct: 241 SK-VEYKSIDMYSNVRSIKSIELSDVVVFV 269 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280 ++I+G SN GKS+LFN L K +IV + G TRD ++ + G K+ DT GI E Sbjct: 4 VLIVGKSNVGKSTLFNKLIGKKKSIVDNKEGVTRDAVSDRVSYFGKSFKLIDTCGIFERP 63 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 +DI+ + T + D+I+ + Sbjct: 64 EDIISERLKNLTLNMLSEGDIIIFV 88 >gi|254473321|ref|ZP_05086718.1| GTP-binding protein EngA [Pseudovibrio sp. JE062] gi|211957437|gb|EEA92640.1| GTP-binding protein EngA [Pseudovibrio sp. JE062] Length = 468 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 76/163 (46%), Gaps = 26/163 (15%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN L K +A+V D PG TRD + D L +I DTAG+ E Sbjct: 5 VAIIGRPNVGKSTLFNRLVGKRLALVDDTPGVTRDRRSGDARLGDLRFRIVDTAGLEEA- 63 Query: 282 DIVEKEGIKRTFLE--VENADLILLLKEINSKKEISFPKNIDF-----------IFIGTK 328 + EG R E + AD L L I+++ + P + F I K Sbjct: 64 EASSLEGRMRAQTEEAIREADACLFL--IDARAGL-MPLDEHFANLLRRNSTPVILCANK 120 Query: 329 SD-------LYSTYTEEYDHLI--SSFTGEGLEELINKIKSIL 362 ++ LY +T + I S+ GEGL EL + ++ I+ Sbjct: 121 AEGKAGDVGLYDAFTLGFGDPIALSAEHGEGLSELYDMLRPIV 163 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 41/66 (62%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G NAGKS+L N + ++ + G TRD ++++ + + + VK+ DTAGIR+ Sbjct: 201 RMAIVGRPNAGKSTLINQMLGEERLLTGPEAGITRDSISVEWEWQDHHVKVFDTAGIRKK 260 Query: 281 DDIVEK 286 + EK Sbjct: 261 ARVQEK 266 >gi|146319380|ref|YP_001199092.1| GTP-binding protein EngA [Streptococcus suis 05ZYH33] gi|146321585|ref|YP_001201296.1| GTP-binding protein EngA [Streptococcus suis 98HAH33] gi|253752406|ref|YP_003025547.1| GTP-binding protein EngA [Streptococcus suis SC84] gi|253754232|ref|YP_003027373.1| GTP-binding protein EngA [Streptococcus suis P1/7] gi|253756166|ref|YP_003029306.1| GTP-binding protein EngA [Streptococcus suis BM407] gi|166225866|sp|A4W3F7|DER_STRS2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|166225868|sp|A4VX53|DER_STRSY RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|145690186|gb|ABP90692.1| Predicted GTPase [Streptococcus suis 05ZYH33] gi|145692391|gb|ABP92896.1| Predicted GTPase [Streptococcus suis 98HAH33] gi|251816695|emb|CAZ52336.1| GTP-binding protein EngA [Streptococcus suis SC84] gi|251818630|emb|CAZ56464.1| GTP-binding protein EngA [Streptococcus suis BM407] gi|251820478|emb|CAR47214.1| GTP-binding protein EngA [Streptococcus suis P1/7] gi|319758811|gb|ADV70753.1| GTP-binding protein EngA [Streptococcus suis JS14] Length = 436 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 49/179 (27%), Positives = 81/179 (45%), Gaps = 33/179 (18%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRE 279 K ++G N GKSSL NA+ ++ I + + GTTRD + D EG + DTAG+R+ Sbjct: 176 KFSLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAIDTHFTDPEGQEFTMIDTAGMRK 235 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336 + + EK + R +E +D+IL++ IN+++ I Sbjct: 236 SGKVYENTEKYSVMRAMRAIERSDVILMV--INAEEGI---------------------- 271 Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL 395 EYD I+ F E + +I I+ NK+ L + K+ + +YL A + Sbjct: 272 REYDKRIAGFAHEAGKGMI-----IVVNKWDTLEKDNHTMKQWEDDIRDQFQYLSYAPI 325 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS+LFN +A + ++IV D+ G TRD + + + DT GI + D Sbjct: 6 IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRKFSLIDTGGIDDVD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + + ++ AD+I+ + Sbjct: 66 APFMEQIKHQAEIAMDEADVIVFV 89 >gi|322379379|ref|ZP_08053750.1| GTP-binding protein EngA [Helicobacter suis HS1] gi|321148197|gb|EFX42726.1| GTP-binding protein EngA [Helicobacter suis HS1] Length = 448 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/83 (42%), Positives = 46/83 (55%), Gaps = 1/83 (1%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI ILG N GKSSLFN L + AI DI GTTRD+ L G+ V++ DT G + Sbjct: 13 KIAILGKPNVGKSSLFNCLLRSRSAITFDIAGTTRDIKKQTFLLAGHGVELWDTGGF-DA 71 Query: 281 DDIVEKEGIKRTFLEVENADLIL 303 D I ++ ++ +DLIL Sbjct: 72 DSIFGEQIQSFNLEAIKASDLIL 94 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 52/87 (59%), Gaps = 2/87 (2%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSL NAL +++ A+V++IPGTT D + + + DTAG+R+ Sbjct: 188 QVGIIGRVNVGKSSLLNALIEQERALVSEIPGTTIDPVDQSISHHNQEICFVDTAGLRQR 247 Query: 281 DDI--VEKEGIKRTFLEVENADLILLL 305 + +EK + RT +E + + LL+ Sbjct: 248 SKVEGLEKFALDRTRKVLEKSHIALLV 274 >gi|303232256|ref|ZP_07318955.1| ribosome-associated GTPase EngA [Atopobium vaginae PB189-T1-4] gi|302481666|gb|EFL44727.1| ribosome-associated GTPase EngA [Atopobium vaginae PB189-T1-4] Length = 439 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 51/87 (58%), Gaps = 3/87 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKSSL N L+K + ++V +I GTTRD + I + +++ DTAG+R+ Sbjct: 182 IAVIGRPNVGKSSLVNKLSKTNRSLVANIAGTTRDAIDICFEYHDTPIRLVDTAGMRKKS 241 Query: 282 DI---VEKEGIKRTFLEVENADLILLL 305 + VE + R ++ AD+ L++ Sbjct: 242 QVHEDVEYYSLVRGLQAMDKADVALMV 268 Score = 45.1 bits (105), Expect = 0.020, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 2/84 (2%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI--RE 279 + I+G N GKS+L N LA AIV + G TRD D D G + DT GI ++ Sbjct: 6 VAIVGRPNVGKSTLVNRLATTKTAIVHESRGVTRDRSYHDCDWRGVDFTLIDTGGIESQK 65 Query: 280 TDDIVEKEGIKRTFLEVENADLIL 303 + D+ ++ L E AD+I+ Sbjct: 66 STDVFALGIREQALLACEEADVIV 89 >gi|33519978|ref|NP_878810.1| GTP-binding protein EngA [Candidatus Blochmannia floridanus] gi|33504324|emb|CAD83216.1| predicted GTPase [Candidatus Blochmannia floridanus] Length = 485 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 51/173 (29%), Positives = 82/173 (47%), Gaps = 36/173 (20%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-- 279 +VI+G N+GKS+ N L K++ IV+DIPGTTRD + I + DTAGIR+ Sbjct: 213 VVIIGRPNSGKSTFVNYLLKEERMIVSDIPGTTRDSVYIPITYNNDKYMFVDTAGIRKKK 272 Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKNIDFIFIGTKS------ 329 + E+ +T ++ A + L + +I +++S ++FI +KS Sbjct: 273 HVSSVAEQISKLKTLQILKYAHVTLFILDIQEGIVNQDLSL---LNFITKSSKSLIIAVN 329 Query: 330 --DLYSTYT--------EEYD-----------HLISSFTGEGLEELINKIKSI 361 D++S+ T EE + H IS+ G G++ L IK I Sbjct: 330 KYDIFSSKTGFDKTLMKEELNKKISFLNFVKIHYISALYGSGIKNLFQSIKKI 382 Score = 40.8 bits (94), Expect = 0.40, Method: Compositional matrix adjust. Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 3/93 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 IV++G N GKS+LFN L A+V+ PG TRD + + + + DT G Sbjct: 12 IVLVGQENVGKSTLFNRLTCTRDALVSSYPGLTRDRKYGYIKYKNFKFILIDTGGFNIFS 71 Query: 282 DIVEKEGIK-RTFLEVENADLILLLKEINSKKE 313 D + ++ I +T + ++ + +IL + ++ KK+ Sbjct: 72 DTLIQDCINDQTNIAIQESCIILFV--VDGKKQ 102 >gi|227903851|ref|ZP_04021656.1| GTP-binding protein EngA [Lactobacillus acidophilus ATCC 4796] gi|227868738|gb|EEJ76159.1| GTP-binding protein EngA [Lactobacillus acidophilus ATCC 4796] Length = 435 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 3/85 (3%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 ++G N GKSSL N L +D IV + GTTRD + +G K+ DTAGIR + Sbjct: 179 MIGRPNVGKSSLVNKLLGEDRVIVANEEGTTRDAVDTPFTKDGIKFKVVDTAGIRRRGKV 238 Query: 284 VEKE---GIKRTFLEVENADLILLL 305 EK + R +E +D++LL+ Sbjct: 239 YEKTEKYSVLRAMSAIERSDVVLLV 263 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 47/87 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN + + +AIV D PG TRD + G+ + DT GI Sbjct: 6 VAIVGQPNVGKSTLFNRIINQRLAIVEDKPGVTRDRNYAQAEWMGHKFDLIDTGGITWEG 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI 308 +E E + + +E AD+I++L + Sbjct: 66 GKIEDEIRAQAEIAIEEADVIVMLTNV 92 >gi|134301774|ref|YP_001121742.1| GTP-binding protein EngA [Francisella tularensis subsp. tularensis WY96-3418] gi|166198717|sp|A4IXH0|DER_FRATW RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|134049551|gb|ABO46622.1| GTP-binding protein [Francisella tularensis subsp. tularensis WY96-3418] Length = 465 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/102 (29%), Positives = 61/102 (59%), Gaps = 5/102 (4%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R+G ++G N GKS+L N + +D +V D+PGTT D ++I + G I DTAG Sbjct: 181 RHGIHFSLIGRPNVGKSTLTNRMLGEDRVVVFDMPGTTIDSVSIPFERHGQKYTIVDTAG 240 Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 +R+ + +EK + +T ++++++++ + +++++ IS Sbjct: 241 VRKRGKVKQTLEKFSVIKTLQAIQDSNVVVAV--VDARQGIS 280 Score = 43.9 bits (102), Expect = 0.052, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 10/89 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-----VLTIDLDLEGYLVKISDTAG 276 + I+G +N GKS+LFN L A+V D G TRD DLD YLV DT G Sbjct: 5 VAIVGRANVGKSTLFNVLTNSHDALVFDFEGVTRDRQYGQAKYDDLD---YLV--VDTGG 59 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL 305 I + D ++ K++ + ++ A+L+ + Sbjct: 60 ISDKDVGFDEFMAKQSQIAIDEANLVFFV 88 >gi|16125900|ref|NP_420464.1| GTP-binding protein EngA [Caulobacter crescentus CB15] gi|221234663|ref|YP_002517099.1| GTP-binding protein EngA [Caulobacter crescentus NA1000] gi|13423060|gb|AAK23632.1| GTP-binding protein [Caulobacter crescentus CB15] gi|220963835|gb|ACL95191.1| GTP-binding protein [Caulobacter crescentus NA1000] Length = 588 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/86 (40%), Positives = 48/86 (55%), Gaps = 1/86 (1%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+LFN LA K +AIV D PG TRD L +++ DTAG + Sbjct: 4 KLAIVGRPNVGKSTLFNRLAGKKLAIVDDQPGVTRDRRYASGSLGDLELELIDTAGFEDV 63 Query: 281 DD-IVEKEGIKRTFLEVENADLILLL 305 DD +E +T +E AD+ L + Sbjct: 64 DDSSLEARMRAQTEAAIEEADVSLFV 89 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/97 (32%), Positives = 54/97 (55%), Gaps = 3/97 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 +I I+G NAGKS+L N L +D + G TRD +++D + +G +++ DTAG+R Sbjct: 180 RIAIIGRPNAGKSTLVNRLLGEDRLLTGPEAGITRDSISVDWEWDGRKIRLVDTAGLRRK 239 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314 + D +EK T + A+++LL+ + EI Sbjct: 240 AKVQDKLEKLSTADTIRAITFAEVVLLVMDATHPFEI 276 >gi|300114862|ref|YP_003761437.1| ribosome-associated GTPase EngA [Nitrosococcus watsonii C-113] gi|299540799|gb|ADJ29116.1| ribosome-associated GTPase EngA [Nitrosococcus watsonii C-113] Length = 464 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/95 (32%), Positives = 53/95 (55%), Gaps = 3/95 (3%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273 EI G ++ ++G N GKS+L N + ++ + ++IPGTTRD ++I G + D Sbjct: 171 EIQAKGLQLAVIGRPNVGKSTLVNRILGEERVLSSEIPGTTRDSISIPFRHHGRDYTLVD 230 Query: 274 TAGIRETD---DIVEKEGIKRTFLEVENADLILLL 305 TAGIR D VEK + ++ + A +++L+ Sbjct: 231 TAGIRRRSRILDRVEKFSVIQSLQSIAIAQVVILV 265 Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 6/87 (6%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV---LTIDLDLEGYLVKISDTAGIR 278 + ++G N GKS+LFN L + A+V D PG TRD L + ++V DT GI Sbjct: 5 VALVGRPNVGKSTLFNRLTRSRDALVADQPGVTRDRQYGLAYCGEQSFFVV---DTGGIM 61 Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL 305 E + + + L +E AD+I L Sbjct: 62 EQESEIGSLMRGQAQLAIEEADVIFFL 88 >gi|254373886|ref|ZP_04989368.1| hypothetical protein FTDG_00040 [Francisella novicida GA99-3548] gi|151571606|gb|EDN37260.1| hypothetical protein FTDG_00040 [Francisella novicida GA99-3548] Length = 465 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/102 (29%), Positives = 61/102 (59%), Gaps = 5/102 (4%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R+G ++G N GKS+L N + +D +V D+PGTT D ++I + G I DTAG Sbjct: 181 RHGIHFSLIGRPNVGKSTLTNRMLGEDRVVVFDMPGTTIDSVSIPFERHGQKYTIVDTAG 240 Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 +R+ + +EK + +T ++++++++ + +++++ IS Sbjct: 241 VRKRGKVKQTLEKFSVIKTLQAIQDSNVVVAV--VDARQGIS 280 Score = 43.5 bits (101), Expect = 0.061, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 10/89 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-----VLTIDLDLEGYLVKISDTAG 276 + I+G +N GKS+LFN L A+V D G TRD DLD YLV DT G Sbjct: 5 VAIVGRANVGKSTLFNVLTNSRDALVFDFEGVTRDRQYGQAKYDDLD---YLV--VDTGG 59 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL 305 I + D ++ K++ + ++ A+L+ + Sbjct: 60 ISDKDVGFDEFMAKQSQIAIDEANLVFFV 88 >gi|91205027|ref|YP_537382.1| GTP-binding protein EngA [Rickettsia bellii RML369-C] gi|122426010|sp|Q1RK21|DER_RICBR RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|91068571|gb|ABE04293.1| GTP-binding protein [Rickettsia bellii RML369-C] Length = 452 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/82 (36%), Positives = 45/82 (54%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 ++G N GKS+LFN L+ + AIV D+PG TRD D + + + DT G+ E D Sbjct: 13 LVGRPNVGKSTLFNRLSMRKKAIVHDLPGVTRDRKYTDGRIGSFEFSLIDTPGLEENPDS 72 Query: 284 VEKEGIKRTFLEVENADLILLL 305 K +++T + ADLI + Sbjct: 73 FGKRLMEQTTKAINEADLICFM 94 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 37/65 (56%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +IV+ G NAGKS+ NAL + + G TR+ + ID +G +K+ DTAG+R+ Sbjct: 186 QIVVSGRPNAGKSTFINALINDERLLTGPEAGITRESIEIDWQYKGNHIKLIDTAGLRKK 245 Query: 281 DDIVE 285 I E Sbjct: 246 ATITE 250 >gi|154246486|ref|YP_001417444.1| GTP-binding protein EngA [Xanthobacter autotrophicus Py2] gi|238686724|sp|A7IIE4|DER_XANP2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|154160571|gb|ABS67787.1| small GTP-binding protein [Xanthobacter autotrophicus Py2] Length = 458 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/88 (40%), Positives = 47/88 (53%), Gaps = 3/88 (3%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 + + I+G N GKS+LFN L K +A+V D PG TRD D L +I DTAG+ E Sbjct: 3 FSLAIVGRPNVGKSTLFNRLVGKKLALVDDRPGVTRDRREGDARLGDLSFRIVDTAGLEE 62 Query: 280 TDDIVEKEGIKRTFLE--VENADLILLL 305 D EG R E + +AD IL + Sbjct: 63 A-DAASLEGRMRAQTEAAIGHADAILFM 89 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 79/172 (45%), Gaps = 28/172 (16%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R K+ +LG NAGKS+L N L +D + G TRD +++++ G +++ DTAG Sbjct: 191 RRPIKVTVLGRPNAGKSTLINRLLGEDRLLTGPEAGITRDSISVEVTYAGAKLEVFDTAG 250 Query: 277 IRET---DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI-------FIG 326 +R+ +D +EK ++ A++++LL + E + D + IG Sbjct: 251 LRKRARIEDKLEKLSAADALRAMKFAEVVVLLVDATHPFEEQDLRIADLVAREGRALVIG 310 Query: 327 -TKSDLY------STYTEEYDHL-----------ISSFTGEGLEELINKIKS 360 KSDL + E+ D L +S G GL++L+ I S Sbjct: 311 YNKSDLVARGGLITRLREDVDRLLPQVKGVPIVPVSGLMGHGLDKLVAAISS 362 >gi|292559009|gb|ADE32010.1| Small GTP-binding domain containing protein [Streptococcus suis GZ1] Length = 436 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 49/179 (27%), Positives = 81/179 (45%), Gaps = 33/179 (18%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRE 279 K ++G N GKSSL NA+ ++ I + + GTTRD + D EG + DTAG+R+ Sbjct: 176 KFSLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAIDTHFTDPEGQEFTMIDTAGMRK 235 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336 + + EK + R +E +D+IL++ IN+++ I Sbjct: 236 SGKVYENTEKYSVMRAMRAIERSDVILMV--INAEEGI---------------------- 271 Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL 395 EYD I+ F E + +I I+ NK+ L + K+ + +YL A + Sbjct: 272 REYDKRIAGFAHEAGKGMI-----IVVNKWDTLEKDNHTMKQWEDDIRDQFQYLSYAPI 325 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS+LFN +A + ++IV D+ G TRD + + + DT GI + D Sbjct: 6 IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRKFSLIDTGGIDDVD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + + ++ AD+I+ + Sbjct: 66 APFMEQIKHQAEIAMDEADVIVFV 89 >gi|89255825|ref|YP_513187.1| GTP-binding protein EngA [Francisella tularensis subsp. holarctica LVS] gi|115314316|ref|YP_763039.1| GTP-binding protein EngA [Francisella tularensis subsp. holarctica OSU18] gi|156501805|ref|YP_001427870.1| GTP-binding protein EngA [Francisella tularensis subsp. holarctica FTNF002-00] gi|167009589|ref|ZP_02274520.1| GTP-binding protein [Francisella tularensis subsp. holarctica FSC200] gi|254367186|ref|ZP_04983217.1| GTP-binding protein [Francisella tularensis subsp. holarctica 257] gi|254367192|ref|ZP_04983222.1| GTP-binding protein [Francisella tularensis subsp. holarctica 257] gi|254368682|ref|ZP_04984696.1| hypothetical protein FTAG_01704 [Francisella tularensis subsp. holarctica FSC022] gi|290953028|ref|ZP_06557649.1| GTP-binding protein EngA [Francisella tularensis subsp. holarctica URFT1] gi|295313760|ref|ZP_06804335.1| GTP-binding protein EngA [Francisella tularensis subsp. holarctica URFT1] gi|122325651|sp|Q0BND2|DER_FRATO RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|122501151|sp|Q2A515|DER_FRATH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|166198715|sp|A7NAB1|DER_FRATF RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|89143656|emb|CAJ78854.1| GTP-binding protein [Francisella tularensis subsp. holarctica LVS] gi|115129215|gb|ABI82402.1| GTP-binding protein [Francisella tularensis subsp. holarctica OSU18] gi|134253007|gb|EBA52101.1| GTP-binding protein [Francisella tularensis subsp. holarctica 257] gi|134253012|gb|EBA52106.1| GTP-binding protein [Francisella tularensis subsp. holarctica 257] gi|156252408|gb|ABU60914.1| GTP-binding protein [Francisella tularensis subsp. holarctica FTNF002-00] gi|157121597|gb|EDO65774.1| hypothetical protein FTAG_01704 [Francisella tularensis subsp. holarctica FSC022] Length = 465 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/102 (29%), Positives = 61/102 (59%), Gaps = 5/102 (4%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R+G ++G N GKS+L N + +D +V D+PGTT D ++I + G I DTAG Sbjct: 181 RHGIHFSLIGRPNVGKSTLTNRMLGEDRVVVFDMPGTTIDSVSIPFERHGQKYTIVDTAG 240 Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 +R+ + +EK + +T ++++++++ + +++++ IS Sbjct: 241 VRKRGKVKQTLEKFSVIKTLQAIQDSNVVVAV--VDARQGIS 280 Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 10/89 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-----VLTIDLDLEGYLVKISDTAG 276 + I+G +N GKS+LFN L A+V D G TRD DLD YLV DT G Sbjct: 5 VAIVGRANVGKSTLFNVLTNSHDALVFDFEGVTRDRQYGQAKYDDLD---YLV--VDTGG 59 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL 305 I + D ++ K++ + ++ A+L+ + Sbjct: 60 ISDKDVGFDEFMAKQSQIAIDEANLVFFV 88 >gi|297170725|gb|ADI21748.1| predicted GTPases [uncultured actinobacterium HF0130_15N16] Length = 442 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 3/87 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--- 278 + I+G N GKS+LFN L + ++V D+PGTTRD + ++ E ++ DTAG+R Sbjct: 192 VAIVGRPNVGKSTLFNRLIGDERSVVHDMPGTTRDAIDTVVETELGPLRFIDTAGMRRKA 251 Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL 305 DD E R ++ AD+ LL+ Sbjct: 252 RVDDDTEYYSNLRALRAIDKADVALLV 278 Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 50/84 (59%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN + + AIV + PG TRD ++ + +GY ++ DT G + Sbjct: 10 VSVVGRPNVGKSTLFNRILGRREAIVEEKPGVTRDRKVLEAEWQGYRFELVDTGGWMPSG 69 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + ++ + ++ + ++DLI+L+ Sbjct: 70 NELDDKVSAQSERAISDSDLIVLV 93 >gi|150376651|ref|YP_001313247.1| GTP-binding protein EngA [Sinorhizobium medicae WSM419] gi|150031198|gb|ABR63314.1| small GTP-binding protein [Sinorhizobium medicae WSM419] Length = 477 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 1/87 (1%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 + + I+G N GKS+LFN L K +A+V D PG TRD D L +I DTAG+ + Sbjct: 3 FTVAIIGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGDAKLVDLKFRIIDTAGLEQ 62 Query: 280 TD-DIVEKEGIKRTFLEVENADLILLL 305 + D ++ +T ++ ADL L + Sbjct: 63 SSPDSLQGRMWAQTEAAIDEADLSLFV 89 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 38/66 (57%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G NAGKS+L N +D + G TRD ++++ D G +K+ DTAG+R Sbjct: 207 RVAIVGRPNAGKSTLINRFLGEDRLLTGPEAGITRDSISVEWDWRGRTIKMFDTAGMRRK 266 Query: 281 DDIVEK 286 + EK Sbjct: 267 AKVQEK 272 >gi|300087259|ref|YP_003757781.1| ferrous iron transport protein B [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299526992|gb|ADJ25460.1| ferrous iron transport protein B [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 676 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 1/83 (1%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI ++G N GKSSLF+ L + V I+++ PGTT DV ++G ++ DT G+ Sbjct: 33 KIALVGSPNVGKSSLFHRLTGRRV-IISNYPGTTVDVFRGQAVIQGRQAEVVDTPGMYSL 91 Query: 281 DDIVEKEGIKRTFLEVENADLIL 303 I E+E + R L E D+IL Sbjct: 92 HSITEEERVARAILLKEKPDVIL 114 >gi|262066723|ref|ZP_06026335.1| ribosome-associated GTPase EngA [Fusobacterium periodonticum ATCC 33693] gi|291379522|gb|EFE87040.1| ribosome-associated GTPase EngA [Fusobacterium periodonticum ATCC 33693] Length = 441 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ ++G NAGKSSL N L+ + IV+DI GTTRD + ++ + I DTAGIR Sbjct: 178 KLAVIGKPNAGKSSLVNKLSGSERTIVSDIAGTTRDAIDTLIEYKDNKYMIIDTAGIRRK 237 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E + R ++ AD+ +L+ Sbjct: 238 SKVEESLEYYSVLRALKSIKRADVCILM 265 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 46/143 (32%), Positives = 69/143 (48%), Gaps = 13/143 (9%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 I I+G N GKS+LFN L +AIV ++PG TRD L D + G I DT G+ Sbjct: 5 IAIVGRPNVGKSTLFNNLIGDKIAIVDNLPGVTRDRLYRDTEWSGSEFVIVDTGGLEPRN 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISF---PKNIDFIFIGTKSDLY 332 +D + + ++ + + AD+IL + + + EI++ KN I K D Sbjct: 65 NDFLMTKIKEQAEVAMNEADVILFVVDGKAGLNPLDDEIAYILRKKNKPVILCVNKID-- 122 Query: 333 STYTEEYDHLISSFTGEGLEELI 355 + E+ D I F G G E L+ Sbjct: 123 -NFFEQQDD-IYDFYGLGFEYLV 143 >gi|253581911|ref|ZP_04859135.1| GTP-binding protein [Fusobacterium varium ATCC 27725] gi|251836260|gb|EES64797.1| GTP-binding protein [Fusobacterium varium ATCC 27725] Length = 441 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G NAGKSSL N L+ ++ IV+DI GTTRD + + + I DTAGIR Sbjct: 178 KLAIIGKPNAGKSSLVNKLSGEERTIVSDIAGTTRDAIDTIVQYKDNKYMIIDTAGIRRK 237 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E + R ++ AD+ +L+ Sbjct: 238 SKVEESLEYYSVLRAIKTIKRADVCILM 265 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN L +AIV D+PG TRD L + + G + DT G+ + Sbjct: 5 VAIVGRPNVGKSTLFNNLVGDRIAIVDDMPGVTRDRLYRETEWNGVEFVVVDTGGLEPRN 64 Query: 282 DIVEKEGIK-RTFLEVENADLILLL 305 + IK + + + AD+IL + Sbjct: 65 NEFMMTKIKEQAEVAMNEADVILFV 89 >gi|118497053|ref|YP_898103.1| GTP-binding protein EngA [Francisella tularensis subsp. novicida U112] gi|194324288|ref|ZP_03058062.1| GTPase of unknown function family protein, putative [Francisella tularensis subsp. novicida FTE] gi|166198716|sp|A0Q534|DER_FRATN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|118422959|gb|ABK89349.1| GTP-binding protein [Francisella novicida U112] gi|194321735|gb|EDX19219.1| GTPase of unknown function family protein, putative [Francisella tularensis subsp. novicida FTE] Length = 465 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/102 (29%), Positives = 61/102 (59%), Gaps = 5/102 (4%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R+G ++G N GKS+L N + +D +V D+PGTT D ++I + G I DTAG Sbjct: 181 RHGIHFSLIGRPNVGKSTLTNRMLGEDRVVVFDMPGTTIDSVSIPFERHGQKYTIVDTAG 240 Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 +R+ + +EK + +T ++++++++ + +++++ IS Sbjct: 241 VRKRGKVKQTLEKFSVIKTLQAIQDSNVVVAV--VDARQGIS 280 Score = 43.5 bits (101), Expect = 0.062, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 10/89 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-----VLTIDLDLEGYLVKISDTAG 276 + I+G +N GKS+LFN L A+V D G TRD DLD YLV DT G Sbjct: 5 VAIVGRANVGKSTLFNVLTNSRDALVFDFEGVTRDRQYGQAKYDDLD---YLV--VDTGG 59 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL 305 I + D ++ K++ + ++ A+L+ + Sbjct: 60 ISDKDVGFDEFMAKQSQIAIDEANLVFFV 88 >gi|294086068|ref|YP_003552828.1| Small GTP-binding protein domain-containing protein [Candidatus Puniceispirillum marinum IMCC1322] gi|292665643|gb|ADE40744.1| Small GTP-binding protein domain protein [Candidatus Puniceispirillum marinum IMCC1322] Length = 478 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/84 (42%), Positives = 47/84 (55%), Gaps = 1/84 (1%) Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TD 281 I+G N GKS+LFN L + AIV D PG TRD D L G +I DTAG+ E +D Sbjct: 5 AIVGRPNVGKSTLFNRLIGRQHAIVDDQPGVTRDRREGDGRLAGLRFRIIDTAGLEEASD 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 +E +T L + AD+ LL+ Sbjct: 65 GSLEDRMRYQTELAIVGADVTLLV 88 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 39/66 (59%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I I+G N GKS+L N+L +D +V G TRD + + + +G K+ DTAG+R Sbjct: 215 RIAIVGRPNMGKSTLINSLLDEDRLLVGPEAGITRDAIELPFEWQGRPYKLVDTAGMRRR 274 Query: 281 DDIVEK 286 +V+K Sbjct: 275 ARVVDK 280 >gi|237739602|ref|ZP_04570083.1| GTP-binding protein engA [Fusobacterium sp. 2_1_31] gi|229423210|gb|EEO38257.1| GTP-binding protein engA [Fusobacterium sp. 2_1_31] Length = 441 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ ++G NAGKSSL N L+ + IV+DI GTTRD + ++ + I DTAGIR Sbjct: 178 KLAVIGKPNAGKSSLVNKLSGSERTIVSDIAGTTRDAIDTLIEYKDNKYMIIDTAGIRRK 237 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E + R ++ AD+ +L+ Sbjct: 238 SKVEESLEYYSVLRALKSIKRADVCILM 265 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/143 (33%), Positives = 69/143 (48%), Gaps = 13/143 (9%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 I I+G N GKS+LFN L +AIV D+PG TRD L D + G I DT G+ Sbjct: 5 IAIVGRPNVGKSTLFNNLIGDKIAIVDDLPGVTRDRLYRDTEWSGSEFVIVDTGGLEPRN 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISF---PKNIDFIFIGTKSDLY 332 +D + + ++ + + AD+IL + + + EI++ KN I K D Sbjct: 65 NDFLMTKIKEQAEVAMNEADVILFVVDGKAGLNPLDDEIAYILRKKNKPVILCVNKID-- 122 Query: 333 STYTEEYDHLISSFTGEGLEELI 355 Y E+ D I F G G E L+ Sbjct: 123 -NYFEQQDD-IYDFYGLGFEYLV 143 >gi|329571714|gb|EGG53395.1| ribosome biogenesis GTPase Der [Enterococcus faecalis TX1467] Length = 436 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 4/89 (4%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRE 279 K ++G N GKSSL NA+ +D IV+DI GTTRD + + EG + DTAG+R+ Sbjct: 176 KFSLIGRPNVGKSSLINAILGEDRVIVSDIEGTTRDAIDTYFESEEGQKFLMIDTAGMRK 235 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLL 305 + EK + R +E +D++L++ Sbjct: 236 RGKVYESTEKYSVMRAMRAIERSDIVLMV 264 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 45/84 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS++FN +A + ++IV D PG TRD + + G I DT G D Sbjct: 6 IAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYTTGEWLGREFSIIDTGGFDLGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + + + ++ AD+I+ + Sbjct: 66 EPFMDQIKHQAEIAIDEADVIIFV 89 >gi|330723544|gb|AEC45914.1| GTP-binding protein Der [Mycoplasma hyorhinis MCLD] Length = 433 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/100 (36%), Positives = 61/100 (61%), Gaps = 5/100 (5%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 +++ I+G NAGKS+L N LA ++ +IV+ I GTTRD ++ + ++ +I DTAGI Sbjct: 170 AFRLAIIGKPNAGKSTLLNKLANENRSIVSPIAGTTRDSVSSFIKIDKIDFEIIDTAGII 229 Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 I V+ + R F +++A L L+L I++ +E+S Sbjct: 230 RKSKIAQSVDFYALLRAFNSLDDAQLSLIL--IDATQELS 267 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/152 (28%), Positives = 78/152 (51%), Gaps = 19/152 (12%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L K V+I+ D PG TRD + ++ G + DT GI + Sbjct: 5 VALIGKPNVGKSTLFNKLVGKKVSIIHDSPGVTRDRIYSKVEWAGKEFYLIDTGGIEIEN 64 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN--IDFIFIGTKSDLY------- 332 +++ +T + +E A+LI+ L ++ + EI + ID + +K L Sbjct: 65 KSFQEQIRIQTQIAIEEANLIIFL--VDGRVEIDSDDHFVIDLLRKSSKKVLIAANKLEG 122 Query: 333 ------STYTEEYDHL--ISSFTGEGLEELIN 356 S Y+ ++H+ IS+ GEG+ +L++ Sbjct: 123 NKFFDTSIYSLGFEHIFPISAIHGEGVGDLLD 154 >gi|328676517|gb|AEB27387.1| GTP-binding protein EngA [Francisella cf. novicida Fx1] Length = 465 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/102 (29%), Positives = 61/102 (59%), Gaps = 5/102 (4%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R+G ++G N GKS+L N + +D +V D+PGTT D ++I + G I DTAG Sbjct: 181 RHGIHFSLIGRPNVGKSTLTNRMLGEDRVVVFDMPGTTIDSVSIPFERHGQKYTIVDTAG 240 Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 +R+ + +EK + +T ++++++++ + +++++ IS Sbjct: 241 VRKRGKVKQTLEKFSVIKTLQAIQDSNVVVAV--VDARQGIS 280 Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 10/89 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-----VLTIDLDLEGYLVKISDTAG 276 + I+G +N GKS+LFN L A+V D G TRD DLD YLV DT G Sbjct: 5 VAIVGRANVGKSTLFNVLTNSRDALVFDFEGVTRDRQYGQAKYDDLD---YLV--VDTGG 59 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL 305 I + D ++ K++ + ++ A+L+ + Sbjct: 60 ISDKDAGFDEFMAKQSQIAIDEANLVFFV 88 >gi|294783341|ref|ZP_06748665.1| ribosome-associated GTPase EngA [Fusobacterium sp. 1_1_41FAA] gi|294480219|gb|EFG27996.1| ribosome-associated GTPase EngA [Fusobacterium sp. 1_1_41FAA] Length = 441 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ ++G NAGKSSL N L+ + IV+DI GTTRD + ++ + I DTAGIR Sbjct: 178 KLAVIGKPNAGKSSLVNKLSGSERTIVSDIAGTTRDAIDTLIEYKDNKYMIIDTAGIRRK 237 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E + R ++ AD+ +L+ Sbjct: 238 SKVEESLEYYSVLRALKSIKRADVCILM 265 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/143 (33%), Positives = 69/143 (48%), Gaps = 13/143 (9%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 I I+G N GKS+LFN L +AIV D+PG TRD L D + G I DT G+ Sbjct: 5 IAIVGRPNVGKSTLFNNLIGDKIAIVDDLPGVTRDRLYRDTEWSGSEFVIVDTGGLEPRN 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISF---PKNIDFIFIGTKSDLY 332 +D + + ++ + + AD+IL + + + EI++ KN I K D Sbjct: 65 NDFLMTKIKEQAEVAMNEADVILFVVDGKAGLNPLDDEIAYILRKKNKPVILCVNKID-- 122 Query: 333 STYTEEYDHLISSFTGEGLEELI 355 Y E+ D I F G G E L+ Sbjct: 123 -NYFEQQDD-IYDFYGLGFEYLV 143 >gi|208780512|ref|ZP_03247852.1| GTPase of unknown function family protein, putative [Francisella novicida FTG] gi|254372413|ref|ZP_04987903.1| hypothetical protein FTCG_01637 [Francisella tularensis subsp. novicida GA99-3549] gi|151570141|gb|EDN35795.1| hypothetical protein FTCG_01637 [Francisella novicida GA99-3549] gi|208743658|gb|EDZ89962.1| GTPase of unknown function family protein, putative [Francisella novicida FTG] Length = 465 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/102 (29%), Positives = 61/102 (59%), Gaps = 5/102 (4%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R+G ++G N GKS+L N + +D +V D+PGTT D ++I + G I DTAG Sbjct: 181 RHGIHFSLIGRPNVGKSTLTNRMLGEDRVVVFDMPGTTIDSVSIPFERHGQKYTIVDTAG 240 Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 +R+ + +EK + +T ++++++++ + +++++ IS Sbjct: 241 VRKRGKVKQTLEKFSVIKTLQAIQDSNVVVAV--VDARQGIS 280 Score = 43.5 bits (101), Expect = 0.062, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 10/89 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-----VLTIDLDLEGYLVKISDTAG 276 + I+G +N GKS+LFN L A+V D G TRD DLD YLV DT G Sbjct: 5 VAIVGRANVGKSTLFNVLTNSRDALVFDFEGVTRDRQYGQAKYDDLD---YLV--VDTGG 59 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL 305 I + D ++ K++ + ++ A+L+ + Sbjct: 60 ISDKDVGFDEFMAKQSQIAIDEANLVFFV 88 >gi|20807296|ref|NP_622467.1| GTPase [Thermoanaerobacter tengcongensis MB4] gi|20515806|gb|AAM24071.1| predicted GTPases [Thermoanaerobacter tengcongensis MB4] Length = 409 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 56/160 (35%), Positives = 84/160 (52%), Gaps = 29/160 (18%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAGIRET 280 I I G NAGKSSL NA+ + +AIV+ PGTT D + ++ L V + DTAGI Sbjct: 18 IAIFGKRNAGKSSLINAITNQPIAIVSPTPGTTTDPVYKSMEILPLGPVVLVDTAGI--- 74 Query: 281 DDIVE--KEGIKRTFLEVENADL-ILLLKEINSKKEISFPKNIDFIF-------IGT--K 328 DD+ E K +++T + D+ IL++ EI+ +++F K + +F IG K Sbjct: 75 DDVGELGKLRVEKTLEVLNRTDIAILVVSEID---DLNFEKQLIKLFREKKVPSIGVLNK 131 Query: 329 SDLYSTYTEEYDHL----------ISSFTGEGLEELINKI 358 DL Y E+ +L +S T +G+EEL N+I Sbjct: 132 IDLDKDYKEKLSYLQSTLGIKFLPVSCATLKGIEELKNEI 171 >gi|56708364|ref|YP_170260.1| GTP-binding protein EngA [Francisella tularensis subsp. tularensis SCHU S4] gi|110670834|ref|YP_667391.1| GTP-binding protein EngA [Francisella tularensis subsp. tularensis FSC198] gi|224457492|ref|ZP_03665965.1| GTP-binding protein EngA [Francisella tularensis subsp. tularensis MA00-2987] gi|254370986|ref|ZP_04986989.1| hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254875187|ref|ZP_05247897.1| GTP-binding protein engA [Francisella tularensis subsp. tularensis MA00-2987] gi|81820765|sp|Q5NFD2|DER_FRATT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|123169321|sp|Q14GT5|DER_FRAT1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|56604856|emb|CAG45939.1| GTP-binding protein [Francisella tularensis subsp. tularensis SCHU S4] gi|110321167|emb|CAL09322.1| GTP-binding protein [Francisella tularensis subsp. tularensis FSC198] gi|151569227|gb|EDN34881.1| hypothetical protein FTBG_01608 [Francisella tularensis subsp. tularensis FSC033] gi|254841186|gb|EET19622.1| GTP-binding protein engA [Francisella tularensis subsp. tularensis MA00-2987] gi|282159981|gb|ADA79372.1| GTP-binding protein EngA [Francisella tularensis subsp. tularensis NE061598] Length = 465 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/102 (29%), Positives = 61/102 (59%), Gaps = 5/102 (4%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R+G ++G N GKS+L N + +D +V D+PGTT D ++I + G I DTAG Sbjct: 181 RHGIHFSLIGRPNVGKSTLTNRMLGEDRVVVFDMPGTTIDSVSIPFERHGQKYTIVDTAG 240 Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 +R+ + +EK + +T ++++++++ + +++++ IS Sbjct: 241 VRKRGKVKQTLEKFSVIKTLQAIQDSNVVVAV--VDARQGIS 280 Score = 43.1 bits (100), Expect = 0.091, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 10/89 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-----VLTIDLDLEGYLVKISDTAG 276 + I+G +N GKS+LFN L A+V D G TRD DLD YLV DT G Sbjct: 5 VAIVGRANVGKSTLFNVLTNSYDALVFDFEGVTRDRQYGQAKYDDLD---YLV--VDTGG 59 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL 305 I + D ++ K++ + ++ A+L+ + Sbjct: 60 ISDKDVGFDEFMAKQSQIAIDEANLVFFV 88 >gi|29376112|ref|NP_815266.1| GTP-binding protein EngA [Enterococcus faecalis V583] gi|227518740|ref|ZP_03948789.1| GTP-binding protein EngA [Enterococcus faecalis TX0104] gi|227553350|ref|ZP_03983399.1| GTP-binding protein EngA [Enterococcus faecalis HH22] gi|257419285|ref|ZP_05596279.1| GTP-binding protein engA [Enterococcus faecalis T11] gi|37999534|sp|Q834T4|DER_ENTFA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|29343574|gb|AAO81336.1| GTPase, putative [Enterococcus faecalis V583] gi|227073821|gb|EEI11784.1| GTP-binding protein EngA [Enterococcus faecalis TX0104] gi|227177519|gb|EEI58491.1| GTP-binding protein EngA [Enterococcus faecalis HH22] gi|257161113|gb|EEU91073.1| GTP-binding protein engA [Enterococcus faecalis T11] gi|315575878|gb|EFU88069.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0309B] gi|315580530|gb|EFU92721.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0309A] Length = 436 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 4/89 (4%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRE 279 K ++G N GKSSL NA+ +D IV+DI GTTRD + + EG + DTAG+R+ Sbjct: 176 KFSLIGRPNVGKSSLINAILGEDRVIVSDIEGTTRDAIDTYFESEEGQKFLMIDTAGMRK 235 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLL 305 + EK + R +E +D++L++ Sbjct: 236 RGKVYESTEKYSVMRAMRAIERSDIVLMV 264 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 45/84 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS++FN +A ++IV D PG TRD + + G I DT GI D Sbjct: 6 IAIVGRPNVGKSTIFNRIAGVRISIVEDTPGVTRDRIYTTGEWLGREFSIIDTGGIDLGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + + + ++ AD+I+ + Sbjct: 66 EPFMDQIKHQAEIAIDEADVIIFV 89 >gi|189461432|ref|ZP_03010217.1| hypothetical protein BACCOP_02087 [Bacteroides coprocola DSM 17136] gi|189431961|gb|EDV00946.1| hypothetical protein BACCOP_02087 [Bacteroides coprocola DSM 17136] Length = 394 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/154 (29%), Positives = 81/154 (52%), Gaps = 18/154 (11%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI-SDTAG 276 N I + G N+GKSSL NAL ++VA+V+DI GTT D + +++ G + DTAG Sbjct: 8 NRLHIGLFGKRNSGKSSLINALTNQEVALVSDIAGTTTDPVYKAMEIHGIGPCVFIDTAG 67 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS-KKEISFP-----KNIDFIFIGTKSD 330 + + D + I++T ++ D+ LL+ + +KE+ + KNI ++I K+D Sbjct: 68 L-DDDGELGALRIQQTMRAMDRTDIALLVCTGDDIEKELEWSRLLKEKNIPVVWILNKAD 126 Query: 331 LYSTYTEEYDHL----------ISSFTGEGLEEL 354 L + T + +S+ T +G+E++ Sbjct: 127 LLTDVTSTIRSIEKKCGQVPLGVSACTKQGMEDI 160 >gi|307292007|ref|ZP_07571876.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0411] gi|306497005|gb|EFM66553.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0411] Length = 436 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 4/89 (4%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRE 279 K ++G N GKSSL NA+ +D IV+DI GTTRD + + EG + DTAG+R+ Sbjct: 176 KFSLIGRPNVGKSSLINAILGEDRVIVSDIEGTTRDAIDTYFESEEGQKFLMIDTAGMRK 235 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLL 305 + EK + R +E +D++L++ Sbjct: 236 RGKVYESTEKYSVMRAMRAIERSDIVLMV 264 Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS++FN +A + ++IV D PG TRD + + G I DT GI D Sbjct: 6 IAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYTTGEWLGREFSIIDTGGIDLGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + + + ++ AD+I+ + Sbjct: 66 EPFMDQIKHQAEIAIDEADVIIFV 89 >gi|227884874|ref|ZP_04002679.1| GTPase [Escherichia coli 83972] gi|227838166|gb|EEJ48632.1| GTPase [Escherichia coli 83972] Length = 242 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/108 (37%), Positives = 58/108 (53%), Gaps = 4/108 (3%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L +S HI + L ++ R+ I I+G S AGKSSL NAL + +V V+D+ TR+V Sbjct: 17 LPYSLSRHILE-HLRKLTRHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQ 75 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305 L GY + I+D G+ E+ D E E + R L DL+L L Sbjct: 76 RFRLSGHGYSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 121 >gi|225435462|ref|XP_002282837.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 677 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 7/93 (7%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAGIRE- 279 I I+G N GKSS+ NAL +D IV+ + GTTRD + + +G ++ DTAGIR Sbjct: 384 IAIVGRPNVGKSSILNALVGEDRTIVSPVSGTTRDAIDTEFTGPDGQKYRLIDTAGIRRR 443 Query: 280 -----TDDIVEKEGIKRTFLEVENADLILLLKE 307 + E + R F + +D++ L+ E Sbjct: 444 AAVASSGSTTEALSVNRAFRAIRRSDVVALVIE 476 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 4/77 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI--- 277 ++ I+G N GKS+LFN L + AIV D PG TRD L Y + DT G+ Sbjct: 175 RVTIVGRPNVGKSALFNRLVGGNKAIVVDEPGVTRDRLYGRAFWGDYEFMVIDTGGVLTI 234 Query: 278 -RETDDIVEKEGIKRTF 293 + D+++E+ I +T Sbjct: 235 SKSQDNVMEELAITKTI 251 >gi|51245541|ref|YP_065425.1| GTP-binding protein Era-like protein [Desulfotalea psychrophila LSv54] gi|50876578|emb|CAG36418.1| probable GTP-binding protein Era homolog [Desulfotalea psychrophila LSv54] Length = 313 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/203 (24%), Positives = 97/203 (47%), Gaps = 27/203 (13%) Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 LG+ +++G + I+G NAGKS+L N L + ++IVT P TTR+ + ++ + Y + + Sbjct: 13 LGKDVKSGM-VAIVGPPNAGKSTLMNQLLGQKISIVTSKPQTTRNRILGIVNDDAYQIVL 71 Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN----------SKKEIS-FPKNI 320 DT G+ + D+ + E ++ + D +L L +++ ++E++ + + I Sbjct: 72 LDTPGLHKADEPLNIEMMRVALESLSEVDAVLFLVDVSLPLPPKALAKQREELAGYMEKI 131 Query: 321 D--FIFIGTKSDLYS-----TYTEEYDHL--------ISSFTGEGLEELINKIKSILSNK 365 + I + K DL E Y L IS+ G+G + L+ +I ++ Sbjct: 132 ESPAILVLNKVDLIDKQKLLPMIESYAKLFPFKAVVPISALNGDGADNLLKEILELIPVG 191 Query: 366 FKKLPFSIPSHKRHLYHLSQTVR 388 + P IP+ + ++ VR Sbjct: 192 PRYFPEDIPTDATERFLAAEIVR 214 >gi|304372871|ref|YP_003856080.1| Predicted GTPase protein [Mycoplasma hyorhinis HUB-1] gi|304309062|gb|ADM21542.1| Predicted GTPase protein [Mycoplasma hyorhinis HUB-1] Length = 433 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/100 (36%), Positives = 61/100 (61%), Gaps = 5/100 (5%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 +++ I+G NAGKS+L N LA ++ +IV+ I GTTRD ++ + ++ +I DTAGI Sbjct: 170 AFRLAIIGKPNAGKSTLLNKLANENRSIVSPIAGTTRDSVSSFIKIDKIDFEIIDTAGII 229 Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 I V+ + R F +++A L L+L I++ +E+S Sbjct: 230 RKSKIAQSVDFYALLRAFNSLDDAQLSLIL--IDATQELS 267 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/152 (28%), Positives = 78/152 (51%), Gaps = 19/152 (12%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L K V+I+ D PG TRD + ++ G + DT GI + Sbjct: 5 VALIGKPNVGKSTLFNKLVGKKVSIIHDSPGVTRDRIYSKVEWAGKEFYLIDTGGIEIEN 64 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN--IDFIFIGTKSDLY------- 332 +++ +T + +E A+LI+ L ++ + EI + ID + +K L Sbjct: 65 KSFQEQIRIQTQIAIEEANLIIFL--VDGRVEIDSDDHFVIDLLRKSSKKVLIAANKLEG 122 Query: 333 ------STYTEEYDHL--ISSFTGEGLEELIN 356 S Y+ ++H+ IS+ GEG+ +L++ Sbjct: 123 NKFFDTSIYSLGFEHIFPISAIHGEGVGDLLD 154 >gi|58337266|ref|YP_193851.1| GTP-binding protein EngA [Lactobacillus acidophilus NCFM] gi|81311473|sp|Q5FKF4|DER_LACAC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|58254583|gb|AAV42820.1| phosphoglycerate dehydrogenase [Lactobacillus acidophilus NCFM] Length = 435 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 3/85 (3%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 ++G N GKSSL N L +D IV + GTTRD + +G K+ DTAGIR + Sbjct: 179 MIGRPNVGKSSLVNKLLGEDRVIVANEEGTTRDAVDTPFTKDGIKFKVVDTAGIRRRGKV 238 Query: 284 VEKE---GIKRTFLEVENADLILLL 305 EK + R +E +D++LL+ Sbjct: 239 YEKTEKYSVLRAMSAIERSDVVLLV 263 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 47/87 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN + + +AIV D PG TRD + G+ + DT GI Sbjct: 6 VAIVGQPNVGKSTLFNRIINQRLAIVEDKPGVTRDRNYAQAEWMGHKFDLIDTGGITWEG 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI 308 +E E + + +E AD+I++L + Sbjct: 66 GKIEDEIRAQAEIAIEEADVIVMLTNV 92 >gi|297746328|emb|CBI16384.3| unnamed protein product [Vitis vinifera] Length = 658 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 7/93 (7%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAGIRE- 279 I I+G N GKSS+ NAL +D IV+ + GTTRD + + +G ++ DTAGIR Sbjct: 365 IAIVGRPNVGKSSILNALVGEDRTIVSPVSGTTRDAIDTEFTGPDGQKYRLIDTAGIRRR 424 Query: 280 -----TDDIVEKEGIKRTFLEVENADLILLLKE 307 + E + R F + +D++ L+ E Sbjct: 425 AAVASSGSTTEALSVNRAFRAIRRSDVVALVIE 457 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 3/85 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKS+LFN L + AIV D PG TRD L Y + DT G+ Sbjct: 189 RVTIVGRPNVGKSALFNRLVGGNKAIVVDEPGVTRDRLYGRAFWGDYEFMVIDTGGVLT- 247 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 I + + K+ +E + +I+ L Sbjct: 248 --ISKSQDNKQATAAIEESSVIIFL 270 >gi|149173742|ref|ZP_01852371.1| probable GTP-binding protein [Planctomyces maris DSM 8797] gi|148847272|gb|EDL61606.1| probable GTP-binding protein [Planctomyces maris DSM 8797] Length = 468 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/139 (30%), Positives = 70/139 (50%), Gaps = 14/139 (10%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI I+G N GKS+ NALA+ + IV+++ GTTRD + I + + DT G+R+ Sbjct: 185 KIAIVGRRNVGKSTFINALAESERMIVSEVAGTTRDSVDIRFEFDDKSFLAIDTPGVRKR 244 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNID-----FIFIGTKS 329 + +E G+ R + A+++L+ +E SK + ID IF+ K Sbjct: 245 KSLANDIEFYGLTRAKRSIRRANVVLMFFDSQETVSKVDKQLVAEIDENHKPCIFVINKW 304 Query: 330 DL---YSTYTEEYDHLISS 345 DL +E++D ++S Sbjct: 305 DLGREKKMTSEKWDEYLTS 323 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 36/86 (41%), Positives = 48/86 (55%), Gaps = 1/86 (1%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI I+G N GKSS+FN LA VAIV G TRD +T + + ++ DT GI T Sbjct: 5 KIAIVGRPNVGKSSIFNWLAGHRVAIVDPTAGVTRDRVTYLVHEKDRYFELVDTGGIGIT 64 Query: 281 DDIVEKEGIKRTF-LEVENADLILLL 305 D E I+R + ++ ADLIL + Sbjct: 65 DSDDLSEDIERQIQVGIDEADLILFV 90 >gi|119944927|ref|YP_942607.1| GTP-binding protein EngA [Psychromonas ingrahamii 37] gi|166225845|sp|A1SU43|DER_PSYIN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|119863531|gb|ABM03008.1| small GTP-binding protein [Psychromonas ingrahamii 37] Length = 489 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/154 (29%), Positives = 84/154 (54%), Gaps = 13/154 (8%) Query: 168 IRSFIEADLD--FSEEEDVQNFSSKEVLNDILFLKNDISSHIS-QGKLGEIIRNGYKIVI 224 +R IE LD F + E +FS E + F++ D + + Q +L + K+ + Sbjct: 151 VRQMIEIALDGFFDDVEQEDDFSDLE--TGLEFVEEDEALLLKEQERLAAL---PIKLAL 205 Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---ETD 281 +G N GKS+L N + ++ +V D+PGTTRD + I + + + DTAG+R + + Sbjct: 206 IGRPNVGKSTLTNRILGEERVLVYDLPGTTRDSIYIPMSRDDREYILIDTAGVRKRKKVN 265 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + VEK + +T +E+ +++LL+ I+++ IS Sbjct: 266 ETVEKFSVIKTLQAIEDCNVVLLI--IDARDGIS 297 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 27/94 (28%), Positives = 49/94 (52%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD ++ + + DT GI + Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKIDEHEFIVIDTGGITGDE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + ++ ++ L ++ AD +L L + + I+ Sbjct: 65 EGIDALMAGQSLLAIDEADAVLFLVDARAGMTIA 98 >gi|54113771|gb|AAV29519.1| NT02FT0401 [synthetic construct] Length = 465 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/102 (29%), Positives = 61/102 (59%), Gaps = 5/102 (4%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R+G ++G N GKS+L N + +D +V D+PGTT D ++I + G I DTAG Sbjct: 181 RHGIHFSLIGRPNVGKSTLTNRMLGEDRVVVFDMPGTTIDSVSIPFERHGQKYTIVDTAG 240 Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 +R+ + +EK + +T ++++++++ + +++++ IS Sbjct: 241 VRKRGKVKQTLEKFSVIKTLQAIQDSNVVVAV--VDARQGIS 280 Score = 43.1 bits (100), Expect = 0.099, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 10/89 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-----VLTIDLDLEGYLVKISDTAG 276 + I+G +N GKS+LFN L A+V D G TRD DLD YLV DT G Sbjct: 5 VAIVGRANVGKSTLFNVLTNSYDALVFDFEGVTRDRQYGQAKYDDLD---YLV--VDTGG 59 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL 305 I + D ++ K++ + ++ A+L+ + Sbjct: 60 ISDKDVGFDEFMAKQSQIAIDEANLVFFV 88 >gi|255975864|ref|ZP_05426450.1| GTP-binding protein engA [Enterococcus faecalis T2] gi|256961938|ref|ZP_05566109.1| GTP-binding protein engA [Enterococcus faecalis Merz96] gi|257082561|ref|ZP_05576922.1| GTP-binding protein engA [Enterococcus faecalis E1Sol] gi|293383006|ref|ZP_06628924.1| ribosome-associated GTPase EngA [Enterococcus faecalis R712] gi|293389505|ref|ZP_06633962.1| ribosome-associated GTPase EngA [Enterococcus faecalis S613] gi|307278085|ref|ZP_07559169.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0860] gi|312907523|ref|ZP_07766514.1| ribosome-associated GTPase EngA [Enterococcus faecalis DAPTO 512] gi|312910141|ref|ZP_07768988.1| ribosome-associated GTPase EngA [Enterococcus faecalis DAPTO 516] gi|255968736|gb|EET99358.1| GTP-binding protein engA [Enterococcus faecalis T2] gi|256952434|gb|EEU69066.1| GTP-binding protein engA [Enterococcus faecalis Merz96] gi|256990591|gb|EEU77893.1| GTP-binding protein engA [Enterococcus faecalis E1Sol] gi|291079671|gb|EFE17035.1| ribosome-associated GTPase EngA [Enterococcus faecalis R712] gi|291081122|gb|EFE18085.1| ribosome-associated GTPase EngA [Enterococcus faecalis S613] gi|306505482|gb|EFM74668.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0860] gi|310626551|gb|EFQ09834.1| ribosome-associated GTPase EngA [Enterococcus faecalis DAPTO 512] gi|311289414|gb|EFQ67970.1| ribosome-associated GTPase EngA [Enterococcus faecalis DAPTO 516] gi|315172323|gb|EFU16340.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX1346] Length = 436 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 4/89 (4%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRE 279 K ++G N GKSSL NA+ +D IV+DI GTTRD + + EG + DTAG+R+ Sbjct: 176 KFSLIGRPNVGKSSLINAILGEDRVIVSDIEGTTRDAIDTYFESEEGQKFLMIDTAGMRK 235 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLL 305 + EK + R +E +D++L++ Sbjct: 236 RGKVYESTEKYSVMRAMRAIERSDIVLMV 264 Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS++FN +A + ++IV D PG TRD + + G I DT GI D Sbjct: 6 IAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYTTGEWLGREFSIIDTGGIDLGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + + + ++ AD+I+ + Sbjct: 66 EPFMDQIKHQAEIAIDEADVIIFV 89 >gi|332992293|gb|AEF02348.1| GTP-binding protein Der [Alteromonas sp. SN2] Length = 481 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L A+V D PG TRD E + DT GI + Sbjct: 5 VALVGRPNVGKSTLFNRLTNTRDALVADYPGLTRDRKYGQAKFEQRQFIVVDTGGITGDE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + ++ E +++ L +E AD++LLL Sbjct: 65 EGIDAEMAQQSLLAIEEADVVLLL 88 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/98 (32%), Positives = 62/98 (63%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI--- 277 K+ I+G N GKS+L N + ++ +V D+PGTTRD + I ++ + + DTAG+ Sbjct: 195 KLAIVGKPNVGKSTLTNRILGEERVVVFDLPGTTRDSVFIPMERDEREYILIDTAGVRKR 254 Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 R+ ++ VEK I +T ++ A+++L++ I++++ I+ Sbjct: 255 RKVNEAVEKFSIVKTLQAIDEANVVLMI--IDAREGIT 290 >gi|257089874|ref|ZP_05584235.1| GTP-binding protein engA [Enterococcus faecalis CH188] gi|312903296|ref|ZP_07762476.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0635] gi|256998686|gb|EEU85206.1| GTP-binding protein engA [Enterococcus faecalis CH188] gi|310633172|gb|EFQ16455.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0635] gi|315577718|gb|EFU89909.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0630] Length = 436 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 4/89 (4%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRE 279 K ++G N GKSSL NA+ +D IV+DI GTTRD + + EG + DTAG+R+ Sbjct: 176 KFSLIGRPNVGKSSLINAILGEDRVIVSDIEGTTRDAIDTYFESEEGQKFLMIDTAGMRK 235 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLL 305 + EK + R +E +D++L++ Sbjct: 236 RGKVYESTEKYSVMRAMRAIERSDIVLMV 264 Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS++FN +A + ++IV D PG TRD + + G I DT GI D Sbjct: 6 IAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYTTGEWLGREFSIIDTGGIDLGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + + + ++ AD+I+ + Sbjct: 66 EPFMDQIKHQAEIAIDEADVIIFV 89 >gi|229545835|ref|ZP_04434560.1| GTP-binding protein EngA [Enterococcus faecalis TX1322] gi|229550027|ref|ZP_04438752.1| GTP-binding protein EngA [Enterococcus faecalis ATCC 29200] gi|255972808|ref|ZP_05423394.1| GTP-binding protein engA [Enterococcus faecalis T1] gi|256619052|ref|ZP_05475898.1| GTP-binding protein engA [Enterococcus faecalis ATCC 4200] gi|256762478|ref|ZP_05503058.1| GTP-binding protein engA [Enterococcus faecalis T3] gi|256853114|ref|ZP_05558484.1| GTP-binding protein engA [Enterococcus faecalis T8] gi|256958969|ref|ZP_05563140.1| GTP-binding protein engA [Enterococcus faecalis DS5] gi|256965136|ref|ZP_05569307.1| GTP-binding protein engA [Enterococcus faecalis HIP11704] gi|257079000|ref|ZP_05573361.1| GTP-binding protein engA [Enterococcus faecalis JH1] gi|257085194|ref|ZP_05579555.1| GTP-binding protein engA [Enterococcus faecalis Fly1] gi|257086755|ref|ZP_05581116.1| GTP-binding protein engA [Enterococcus faecalis D6] gi|257416082|ref|ZP_05593076.1| GTP-binding protein engA [Enterococcus faecalis AR01/DG] gi|257422630|ref|ZP_05599620.1| GTP-binding protein engA [Enterococcus faecalis X98] gi|294781352|ref|ZP_06746695.1| ribosome-associated GTPase EngA [Enterococcus faecalis PC1.1] gi|300861220|ref|ZP_07107307.1| ribosome-associated GTPase EngA [Enterococcus faecalis TUSoD Ef11] gi|307271029|ref|ZP_07552312.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX4248] gi|307273236|ref|ZP_07554482.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0855] gi|307274973|ref|ZP_07556136.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX2134] gi|307289094|ref|ZP_07569050.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0109] gi|312900749|ref|ZP_07760046.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0470] gi|312951482|ref|ZP_07770378.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0102] gi|229304833|gb|EEN70829.1| GTP-binding protein EngA [Enterococcus faecalis ATCC 29200] gi|229309034|gb|EEN75021.1| GTP-binding protein EngA [Enterococcus faecalis TX1322] gi|255963826|gb|EET96302.1| GTP-binding protein engA [Enterococcus faecalis T1] gi|256598579|gb|EEU17755.1| GTP-binding protein engA [Enterococcus faecalis ATCC 4200] gi|256683729|gb|EEU23424.1| GTP-binding protein engA [Enterococcus faecalis T3] gi|256711573|gb|EEU26611.1| GTP-binding protein engA [Enterococcus faecalis T8] gi|256949465|gb|EEU66097.1| GTP-binding protein engA [Enterococcus faecalis DS5] gi|256955632|gb|EEU72264.1| GTP-binding protein engA [Enterococcus faecalis HIP11704] gi|256987030|gb|EEU74332.1| GTP-binding protein engA [Enterococcus faecalis JH1] gi|256993224|gb|EEU80526.1| GTP-binding protein engA [Enterococcus faecalis Fly1] gi|256994785|gb|EEU82087.1| GTP-binding protein engA [Enterococcus faecalis D6] gi|257157910|gb|EEU87870.1| GTP-binding protein engA [Enterococcus faecalis ARO1/DG] gi|257164454|gb|EEU94414.1| GTP-binding protein engA [Enterococcus faecalis X98] gi|294451582|gb|EFG20041.1| ribosome-associated GTPase EngA [Enterococcus faecalis PC1.1] gi|295112973|emb|CBL31610.1| ribosome-associated GTPase EngA [Enterococcus sp. 7L76] gi|300850259|gb|EFK78009.1| ribosome-associated GTPase EngA [Enterococcus faecalis TUSoD Ef11] gi|306499803|gb|EFM69164.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0109] gi|306508421|gb|EFM77528.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX2134] gi|306510221|gb|EFM79245.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0855] gi|306512527|gb|EFM81176.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX4248] gi|310630448|gb|EFQ13731.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0102] gi|311292230|gb|EFQ70786.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0470] gi|315027277|gb|EFT39209.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX2137] gi|315029396|gb|EFT41328.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX4000] gi|315033958|gb|EFT45890.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0017] gi|315036967|gb|EFT48899.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0027] gi|315144428|gb|EFT88444.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX2141] gi|315147253|gb|EFT91269.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX4244] gi|315152495|gb|EFT96511.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0031] gi|315155773|gb|EFT99789.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0043] gi|315158060|gb|EFU02077.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0312] gi|315160456|gb|EFU04473.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0645] gi|315164003|gb|EFU08020.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX1302] gi|315169046|gb|EFU13063.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX1341] gi|315169716|gb|EFU13733.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX1342] gi|323480712|gb|ADX80151.1| small GTP-binding domain protein [Enterococcus faecalis 62] gi|327535121|gb|AEA93955.1| ribosome-associated GTPase EngA [Enterococcus faecalis OG1RF] Length = 436 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 4/89 (4%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRE 279 K ++G N GKSSL NA+ +D IV+DI GTTRD + + EG + DTAG+R+ Sbjct: 176 KFSLIGRPNVGKSSLINAILGEDRVIVSDIEGTTRDAIDTYFESEEGQKFLMIDTAGMRK 235 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLL 305 + EK + R +E +D++L++ Sbjct: 236 RGKVYESTEKYSVMRAMRAIERSDIVLMV 264 Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS++FN +A + ++IV D PG TRD + + G I DT GI D Sbjct: 6 IAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYTTGEWLGREFSIIDTGGIDLGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + + + ++ AD+I+ + Sbjct: 66 EPFMDQIKHQAEIAIDEADVIIFV 89 >gi|254478618|ref|ZP_05091991.1| putative GTPase [Carboxydibrachium pacificum DSM 12653] gi|214035472|gb|EEB76173.1| putative GTPase [Carboxydibrachium pacificum DSM 12653] Length = 403 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 54/157 (34%), Positives = 80/157 (50%), Gaps = 23/157 (14%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAGIRET 280 I I G NAGKSSL NA+ + +AIV+ PGTT D + ++ L V + DTAGI Sbjct: 12 IAIFGKRNAGKSSLINAITNQPIAIVSPTPGTTTDPVYKSMEILPLGPVVLVDTAGI--- 68 Query: 281 DDIVE--KEGIKRTFLEVENADL-ILLLKEINSKK------EISFPKNIDFIFIGTKSDL 331 DD+ E K +++T + D+ IL++ EI+ E+ K + I + K DL Sbjct: 69 DDVGELGKLRVEKTLEVLNRTDIAILVVSEIDDLNFEKQLIELFREKKVPSIGVLNKIDL 128 Query: 332 YSTYTEEYDHL----------ISSFTGEGLEELINKI 358 Y E+ +L +S T +G+EEL N+I Sbjct: 129 DKDYKEKLSYLQSTLGIKFLPVSCATLKGIEELKNEI 165 >gi|78189608|ref|YP_379946.1| GTP-binding protein EngA [Chlorobium chlorochromatii CaD3] gi|123743429|sp|Q3AQ22|DER_CHLCH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|78171807|gb|ABB28903.1| Small GTP-binding protein domain [Chlorobium chlorochromatii CaD3] Length = 443 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 48/86 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN + ++ AIV PG TRD + + +G K+ DT G Sbjct: 5 LALVGRPNVGKSTLFNRILRQRSAIVDPTPGVTRDRHIAEGEWQGKQFKLMDTGGYNTDG 64 Query: 282 DIVEKEGIKRTFLEVENADLILLLKE 307 D++ K +++T + +AD IL + + Sbjct: 65 DVLSKAMLEQTLHALADADSILFITD 90 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 5/88 (5%) Query: 199 LKNDISSHISQGKLGEIIRN-GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257 L +D+ + + GE+ + + I+G N GKSS NAL + IV++IPGTTRD Sbjct: 156 LLDDVLEALPEAPEGEVKGDTAVHLAIVGRPNVGKSSFVNALLGTNRHIVSNIPGTTRDA 215 Query: 258 LTIDL--DLEGYLVKISDTAGIRETDDI 283 + L + + YL + DTAG+R+ I Sbjct: 216 IDSRLMRNQQEYL--LIDTAGLRKRTKI 241 >gi|315150548|gb|EFT94564.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0012] Length = 436 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 4/89 (4%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRE 279 K ++G N GKSSL NA+ +D IV+DI GTTRD + + EG + DTAG+R+ Sbjct: 176 KFSLIGRPNVGKSSLINAILGEDRVIVSDIEGTTRDAIDTYFESEEGQKFLMIDTAGMRK 235 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLL 305 + EK + R +E +D++L++ Sbjct: 236 RGKVYESTEKYSVMRAMRAIERSDIVLMV 264 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS++FN +A + ++IV D PG TRD + + G I DT GI D Sbjct: 6 IAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYTTGEWLGREFSIIDTGGIDLGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + + + ++ AD+I+ + Sbjct: 66 EPFMDQIKHQAEIAIDEADVIIFV 89 >gi|256825342|ref|YP_003149302.1| small GTP-binding domain-containing protein [Kytococcus sedentarius DSM 20547] gi|256688735|gb|ACV06537.1| small GTP-binding protein domain/GTP-binding conserved hypothetical protein [Kytococcus sedentarius DSM 20547] Length = 527 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 60/113 (53%), Gaps = 9/113 (7%) Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267 Q G ++ ++ +LG N GKSSL N LA + +V ++ GTTRD + ++L G Sbjct: 255 PQSDAGRVVGGPRRVALLGRPNVGKSSLLNRLAGSERVVVDNVAGTTRDPVDEYIELGGR 314 Query: 268 LVKISDTAGIRETDDIVEKEGIK-----RTFLEVENADLILLLKEINSKKEIS 315 DTAGIR + + G+ RT +E A++ ++L I++ +EI+ Sbjct: 315 TWMFVDTAGIRRR--VHQTRGVDFYASLRTQSALEKAEVAVVL--IDAGEEIA 363 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 43/84 (51%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+L N + A+V D PG TRD +T + G + DT G Sbjct: 94 VAIVGRPNVGKSTLVNRFLGRREAVVQDEPGVTRDRVTYPAEWNGVPFMVMDTGGWEIDA 153 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++K ++ + VE AD+++ + Sbjct: 154 KGIQKHVAQQAEVAVELADVVIFV 177 >gi|70726437|ref|YP_253351.1| GTP-binding protein EngA [Staphylococcus haemolyticus JCSC1435] gi|123660249|sp|Q4L6I0|DER_STAHJ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|68447161|dbj|BAE04745.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 436 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSL NA+ +D IV+++ GTTRD + + +G + DTAG+R+ Sbjct: 177 RLSIIGRPNVGKSSLVNAILGEDRVIVSNVAGTTRDAVDTEYSYDGQDYVLIDTAGMRKK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + EK + R +E ++++L++ Sbjct: 237 GKVYESTEKYSVLRALKAIERSNVVLIV 264 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 45/84 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN + + V+IV D PG TRD + + + I DT GI D Sbjct: 6 VAIVGRPNVGKSTIFNRVVGERVSIVEDTPGVTRDRIYSSGEWLTHEFNIIDTGGIEIGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + + + ++ AD+I+ + Sbjct: 66 APFQTQIRAQAEIAIDEADVIIFM 89 >gi|88608743|ref|YP_506419.1| putative GTP-binding protein EngA [Neorickettsia sennetsu str. Miyayama] gi|88600912|gb|ABD46380.1| putative GTP-binding protein EngA [Neorickettsia sennetsu str. Miyayama] Length = 473 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 61/118 (51%), Gaps = 3/118 (2%) Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255 I ++++ I + K G + K+ ILG N GKSSL N KD +V I GTTR Sbjct: 150 ISYIESFIPEQLDTPKNGSEEQRRIKVAILGQPNVGKSSLMNKFVGKDRVLVLPIAGTTR 209 Query: 256 DVLTIDLDLEGYLVKISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEINS 310 D ++ +L + ++ DTAG+R+ D +EK R +D+++ + +I++ Sbjct: 210 DPISDELQWKCTTFELVDTAGLRKKQRVTDGLEKICNSRALRTSAESDVVIFMCDISN 267 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 86/166 (51%), Gaps = 20/166 (12%) Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDT 274 +++ +++ I+G +N GKS+LFN +AK+ +I D G TRDV+ + L +G + + DT Sbjct: 1 MQSTFRVSIVGKANVGKSTLFNKMAKEKRSITMDRKGVTRDVVVRRISLSDGKSLLLLDT 60 Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLL--KEINSKKEISFPK-------NIDFIFI 325 AG E ++RT ++ +D++L + +I+S +++ F N + + Sbjct: 61 AGFNPQ----HPETVERTEYAIKESDMVLFVIDNKIDS-EDMLFANWLRRNAGNSKIVLV 115 Query: 326 GTKSDL-----YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKF 366 KSD S + + LIS+ GL ELI+ I+S + + Sbjct: 116 CNKSDRKDRDDCSLFGFQNVFLISAEHSLGLRELISYIESFIPEQL 161 >gi|149186494|ref|ZP_01864806.1| GTP-binding protein EngA [Erythrobacter sp. SD-21] gi|148829721|gb|EDL48160.1| GTP-binding protein EngA [Erythrobacter sp. SD-21] Length = 479 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/86 (41%), Positives = 46/86 (53%), Gaps = 3/86 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 ++I+G N GKS+LFN L K +A+V D PG TRD D ++ G + DTAG E D Sbjct: 9 VIIIGRPNVGKSTLFNRLIGKKLALVDDQPGVTRDRRMGDAEIAGLEFTVVDTAGW-EDD 67 Query: 282 DIVEKEGIKRTFLEV--ENADLILLL 305 D G R EV E AD L + Sbjct: 68 DPESLPGRMRKQTEVSLEGADAALFV 93 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 6/72 (8%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL------EGYLVKISDT 274 K+ I+G NAGKS+L N L +D + G TRD + +D D E +++ DT Sbjct: 194 KLAIVGRPNAGKSTLINRLLGEDRLLTGPEAGITRDSIAVDWDWFDPKANEQREIRLIDT 253 Query: 275 AGIRETDDIVEK 286 AG+R+ + EK Sbjct: 254 AGMRKRAKVTEK 265 >gi|87118473|ref|ZP_01074372.1| GTPase EngA [Marinomonas sp. MED121] gi|86166107|gb|EAQ67373.1| GTPase EngA [Marinomonas sp. MED121] Length = 454 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 52/90 (57%), Gaps = 3/90 (3%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G +I ++G N GKS+L N + +D +V D+PGTTRD + I + DTAG+R Sbjct: 179 GTRIGVIGRPNVGKSTLVNRMLGEDRVVVYDMPGTTRDSVYIPYIRNEKEYTLIDTAGVR 238 Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLL 305 I VEK I +T +++A++++++ Sbjct: 239 RRKHIKEAVEKFSIVKTLKAIQDANVVIVV 268 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L + A+V D PG TRD D + + + DT GI + Sbjct: 5 IALVGRPNVGKSTLFNQLTRSRDALVADYPGLTRDRKYGDGRIGEHEFIVIDTGGISGDE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++++ +++ L +E AD +L L Sbjct: 65 MGIDEKMARQSLLAIEEADTVLFL 88 >gi|296112016|ref|YP_003622398.1| GTP-binding protein EngA [Leuconostoc kimchii IMSNU 11154] gi|295833548|gb|ADG41429.1| GTP-binding protein EngA [Leuconostoc kimchii IMSNU 11154] Length = 437 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN +A + +AIV D PG TRD L + Y ++ DT GI D Sbjct: 6 VAIVGRPNVGKSTIFNRMAGERIAIVEDQPGVTRDRLYAPAEWLNYEFRMIDTGGIELGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + E + L ++ AD+I+++ Sbjct: 66 EPFLAEIRAQVELAIDEADVIVMV 89 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 52/89 (58%), Gaps = 4/89 (4%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRE 279 K I+G N GKSS+ NA+ +D IV+ I GTTRD + T + EG + DTAG+R+ Sbjct: 177 KFSIIGRPNVGKSSIVNAMLGEDRVIVSSIEGTTRDAIDTRFVTPEGDEFIMVDTAGMRK 236 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLL 305 + EK + R ++N+++IL++ Sbjct: 237 RGKVYENTEKYSVMRALKAIDNSNVILMV 265 >gi|268318173|ref|YP_003291892.1| small GTP-binding protein [Rhodothermus marinus DSM 4252] gi|262335707|gb|ACY49504.1| small GTP-binding protein [Rhodothermus marinus DSM 4252] Length = 434 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/65 (46%), Positives = 40/65 (61%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSL NAL ++ +IVTDI GTTRD + L G + + DTAG+R Sbjct: 176 RLAIVGRPNVGKSSLTNALLGQERSIVTDISGTTRDAVHSVLKYYGREIVLVDTAGLRRR 235 Query: 281 DDIVE 285 I E Sbjct: 236 SRIRE 240 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 1/90 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 + I+G N GKS+ FN L + AI D PG TRD + + G + DT G + + Sbjct: 4 VAIVGRPNVGKSTFFNRLTRSHEAITHDQPGVTRDRVYGTAEWNGVRFSVVDTGGYVPNS 63 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310 DI E+ ++ + +E AD IL + ++ + Sbjct: 64 SDIFEQAIREQVQIAIEEADAILFMVDVTT 93 >gi|220931895|ref|YP_002508803.1| small GTP-binding protein [Halothermothrix orenii H 168] gi|254783157|sp|B8CWY9|DER_HALOH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|219993205|gb|ACL69808.1| small GTP-binding protein [Halothermothrix orenii H 168] Length = 438 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 50/87 (57%), Gaps = 3/87 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKSSL N + ++ IV+DIPGTTRD + ++ G+ + DTAG+R+ Sbjct: 180 VAIIGKPNVGKSSLVNYIVGQERVIVSDIPGTTRDAIDTLVEKNGHRYNLIDTAGLRKKS 239 Query: 282 DI---VEKEGIKRTFLEVENADLILLL 305 + E RT ++ +D ++++ Sbjct: 240 RVKEATEYYSALRTIKAIDRSDGVIMM 266 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 78/164 (47%), Gaps = 21/164 (12%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN LA ++IV P TRD + D++ I DT GI D Sbjct: 6 VAIVGRPNVGKSTLFNRLAGYRISIVEGEPNVTRDRIYADVNWLDRSFIIVDTGGIDPYD 65 Query: 282 DIVEKEGIK-RTFLEVENADLILLL-----------KEI------NSKKEISFPKNIDFI 323 K +K + + ++ A LIL + +E+ ++KK I +D Sbjct: 66 RDQIKNMVKYQAQMAIDEASLILFVVDGRNGLTATDEEVAAFLRKSNKKVILVVNKVD-D 124 Query: 324 FIGTKSDLYSTYTEEYDHL--ISSFTGEGLEELINKIKSILSNK 365 F + D + YT +D L IS+ G+ +L+++I ++L K Sbjct: 125 FKNMEEDCWEFYTLGFDKLIPISAEHGKNTGDLLDEIVNMLPEK 168 >gi|302039510|ref|YP_003799832.1| GTP-binding protein EngA [Candidatus Nitrospira defluvii] gi|300607574|emb|CBK43907.1| GTP-binding protein EngA [Candidatus Nitrospira defluvii] Length = 464 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/110 (29%), Positives = 60/110 (54%), Gaps = 3/110 (2%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L +D+ SH+++ E + +I I+G N GKS+L N++ + +V+++PGTTRD + Sbjct: 181 LLDDLFSHMAEPLDEEATSDTPRIAIVGRPNVGKSTLVNSVLGEARVVVSNVPGTTRDPV 240 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305 + ++DTAGIR + +E + R+ + +D+ +LL Sbjct: 241 DSVATFKDRQYVLTDTAGIRRRGRVERGIEGYSVARSLRAIGRSDIAVLL 290 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 40/144 (27%), Positives = 70/144 (48%), Gaps = 18/144 (12%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN + AIV D+PG TRD D ++ DT G+ Sbjct: 31 IALIGRPNVGKSTLFNRILGTRAAIVDDVPGVTRDRNYADSTYRNRRFRLVDTGGL---- 86 Query: 282 DIVEKEGI-----KRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTY- 335 D EG+ +++ L + AD+++L+ ++++ ++ P + + + SD Y Sbjct: 87 DPTASEGMLSLIRQQSQLAIAEADILVLV--LDARSGLT-PADEEVVQTLRGSDKPVYYV 143 Query: 336 -----TEEYDHLISSFTGEGLEEL 354 T + D L++ F G E+L Sbjct: 144 INKIDTPKADPLVADFYRLGQEQL 167 >gi|257468935|ref|ZP_05633029.1| GTP-binding protein [Fusobacterium ulcerans ATCC 49185] gi|317063183|ref|ZP_07927668.1| GTP-binding protein [Fusobacterium ulcerans ATCC 49185] gi|313688859|gb|EFS25694.1| GTP-binding protein [Fusobacterium ulcerans ATCC 49185] Length = 441 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G NAGKSSL N L+ ++ IV+DI GTTRD + + + I DTAGIR Sbjct: 178 KLAIIGKPNAGKSSLVNRLSGEERTIVSDIAGTTRDAIDTIVQYKDNKYMIIDTAGIRRK 237 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E + R ++ AD+ +L+ Sbjct: 238 SKVEESLEYYSVLRAIKTIKRADVCILM 265 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN L +AIV D+PG TRD L + + G + DT G+ + Sbjct: 5 VAIVGRPNVGKSTLFNNLVGDRIAIVDDMPGVTRDRLYRETEWNGVEFVVVDTGGLEPRN 64 Query: 282 DIVEKEGIK-RTFLEVENADLILLL 305 + IK + + + AD+IL + Sbjct: 65 NEFMMTKIKEQAEVAMNEADVILFV 89 >gi|152975027|ref|YP_001374544.1| GTP-binding protein EngA [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|189037136|sp|A7GN41|DER_BACCN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|152023779|gb|ABS21549.1| small GTP-binding protein [Bacillus cytotoxicus NVH 391-98] Length = 436 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/110 (30%), Positives = 59/110 (53%), Gaps = 3/110 (2%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L ++++ H + + E + ++G N GKSSL NAL ++ IV+++ GTTRD + Sbjct: 155 LLDEVAQHFPKVEEEEYDDETIRFCLIGRPNVGKSSLVNALLGQERVIVSNVAGTTRDAV 214 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305 +G I DTAG+R+ + EK + R +E +D++L++ Sbjct: 215 DTPYTKDGQDYVIIDTAGMRKKGKVYESTEKYSVLRALRAIERSDVVLVV 264 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN + + ++IV DIPG TRD + + + I DT GI D Sbjct: 6 VAIVGRPNVGKSTIFNRIVGERISIVEDIPGVTRDRIYSAGEWLNHEFNIIDTGGIDIGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + ++ + ++ AD+I+ + Sbjct: 66 EPFLTQIRQQAEVAIDEADVIIFM 89 >gi|259503207|ref|ZP_05746109.1| ribosome-associated GTPase EngA [Lactobacillus antri DSM 16041] gi|259168864|gb|EEW53359.1| ribosome-associated GTPase EngA [Lactobacillus antri DSM 16041] Length = 437 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/154 (26%), Positives = 73/154 (47%), Gaps = 17/154 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN +A + ++IV D PG TRD + + G + DT GI +D Sbjct: 6 VAIVGRPNVGKSTLFNRIAGERISIVEDTPGVTRDRIYAHGEWLGKNFNMIDTGGIELSD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333 + + ++ + ++ AD+I+L+ ++ S I + N + K D Sbjct: 66 QPLLTQIRQQAEIAIDEADVIVLVVDVESGVTDADEQVARILYRSNKPVVLAVNKVDNPE 125 Query: 334 TYTEEYD---------HLISSFTGEGLEELINKI 358 + YD + +SS G GL +L++ + Sbjct: 126 RRNDVYDFYSLGLGEPYPVSSVHGVGLGDLLDAV 159 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 51/86 (59%), Gaps = 4/86 (4%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRETDD 282 ++G N GKSSL N + ++ IV+++ GTTRD + T + +G + DTAGIR+ Sbjct: 179 LIGRPNVGKSSLVNGILGENRVIVSNMAGTTRDAINTRFVAPDGQEFTMIDTAGIRKQGK 238 Query: 283 I---VEKEGIKRTFLEVENADLILLL 305 I E+ + R ++++D++L++ Sbjct: 239 IYENTERYALMRAMRAIDDSDVVLVV 264 >gi|268680372|ref|YP_003304803.1| ribosome-associated GTPase EngA [Sulfurospirillum deleyianum DSM 6946] gi|268618403|gb|ACZ12768.1| ribosome-associated GTPase EngA [Sulfurospirillum deleyianum DSM 6946] Length = 477 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 2/86 (2%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKSSL NAL K A+V+++ GTT D + ++ ++ DTAG+R Sbjct: 210 VAIIGRVNVGKSSLLNALVGKQRAVVSNVAGTTIDPVDESIEYNEKVINFVDTAGLRRRG 269 Query: 282 DI--VEKEGIKRTFLEVENADLILLL 305 I +EK + RT +E A++ LL+ Sbjct: 270 KIEGIEKFALMRTKEMLERANIALLV 295 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 40/65 (61%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI I+G N GKSSLFN +AK +AI +D GTTRD+ + + + I DT G+ ++ Sbjct: 3 KIAIIGLPNVGKSSLFNRIAKARIAITSDFSGTTRDIKSHQVYITEKPCLILDTGGLDKS 62 Query: 281 DDIVE 285 ++ E Sbjct: 63 TELFE 67 >gi|296127654|ref|YP_003634906.1| small GTP-binding protein [Brachyspira murdochii DSM 12563] gi|296019470|gb|ADG72707.1| small GTP-binding protein [Brachyspira murdochii DSM 12563] Length = 394 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 60/181 (33%), Positives = 80/181 (44%), Gaps = 27/181 (14%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTA 275 N I I G NAGKSS+ NA+A +DVAIV+D GTT D + I+++ G V I DTA Sbjct: 8 NRTHIAIFGRRNAGKSSIINAIANQDVAIVSDTAGTTTDPVKKAIEINAIGACV-IVDTA 66 Query: 276 G-----------IRETDDIVEKEGIKRTFLEVE--NADLILLLKEINSKKEISFPKNIDF 322 G I +T I+E I + N D +L LK N + P Sbjct: 67 GFDDEGELGALRIHKTRKIMESADIALLVFDSSFINNDYLLELKWKNELVSLEIP----V 122 Query: 323 IFIGTKSDLYSTY-------TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375 I + K DL Y E +D + S + + N I+SI S+ K SI Sbjct: 123 IAVLNKIDLNDNYKNIEQNIKEMFDLEVVSISANSRVNIDNLIESIKSSIPKTEEISITG 182 Query: 376 H 376 H Sbjct: 183 H 183 >gi|251781814|ref|YP_002996116.1| GTP-binding protein EngA [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390443|dbj|BAH80902.1| GTP-binding protein [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|323126626|gb|ADX23923.1| GTP-binding protein EngA [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 436 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 71/145 (48%), Gaps = 31/145 (21%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRETDD 282 ++G N GKSSL NA+ +D I + + GTTRD + D +G + DTAG+R++ Sbjct: 179 LIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDADGQEFTMIDTAGMRKSGK 238 Query: 283 I---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY 339 I EK + R ++ +D++L++ IN+++ I EY Sbjct: 239 IYENTEKYSVMRAMRAIDRSDVVLMV--INAEEGI----------------------REY 274 Query: 340 DHLISSF---TGEGLEELINKIKSI 361 D I+ F G+G+ ++NK +I Sbjct: 275 DKRIAGFAHEAGKGMIIVVNKWDTI 299 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN +A + ++IV D+ G TRD + + + DT GI + D Sbjct: 6 VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRQFSLIDTGGIDDVD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + + +E AD+I+ + Sbjct: 66 APFMEQIKHQAQIAMEEADVIVFV 89 >gi|322411159|gb|EFY02067.1| GTP-binding protein EngA [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 436 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 71/145 (48%), Gaps = 31/145 (21%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRETDD 282 ++G N GKSSL NA+ +D I + + GTTRD + D +G + DTAG+R++ Sbjct: 179 LIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDADGQEFTMIDTAGMRKSGK 238 Query: 283 I---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY 339 I EK + R ++ +D++L++ IN+++ I EY Sbjct: 239 IYENTEKYSVMRAMRAIDRSDVVLMV--INAEEGI----------------------REY 274 Query: 340 DHLISSF---TGEGLEELINKIKSI 361 D I+ F G+G+ ++NK +I Sbjct: 275 DKRIAGFAHEAGKGMIIVVNKWDTI 299 Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN +A + ++IV ++ G TRD + + + DT GI + D Sbjct: 6 VAIVGRPNVGKSTLFNRIAGERISIVENVEGVTRDRIYATGEWLNRQFSLIDTGGIDDVD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + + +E AD+I+ + Sbjct: 66 APFMEQIKNQAQIAMEEADVIVFV 89 >gi|229815365|ref|ZP_04445700.1| hypothetical protein COLINT_02411 [Collinsella intestinalis DSM 13280] gi|229809145|gb|EEP44912.1| hypothetical protein COLINT_02411 [Collinsella intestinalis DSM 13280] Length = 429 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 51/162 (31%), Positives = 74/162 (45%), Gaps = 27/162 (16%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIR 278 ++I + G++NAGKSSL N L V + D T D T L L G V I+DT G Sbjct: 210 FRIALTGYTNAGKSSLLNQLCGPSV-LAQDKLFATLDPTTRSLSLPGGRNVTITDTVGFI 268 Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI-----FIGTKSDLYS 333 + E K T EV +ADLIL + +I+ + +P+++D + +G Sbjct: 269 QKLPHGLVEAFKSTLSEVRDADLILRVVDIS---DADYPRHVDAVEHVLDEVGAADQPAV 325 Query: 334 TYTEEYDHL-----------------ISSFTGEGLEELINKI 358 T + D L S+ TGEG EEL+N+I Sbjct: 326 TVYNKIDRLDSSVVESLRRRDPRAVFFSAVTGEGKEELLNRI 367 >gi|126736006|ref|ZP_01751750.1| GTP-binding protein EngA [Roseobacter sp. CCS2] gi|126714563|gb|EBA11430.1| GTP-binding protein EngA [Roseobacter sp. CCS2] Length = 485 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 77/160 (48%), Gaps = 18/160 (11%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 + + I+G N GKS+LFN L K +A+V D PG TRD+ + + + D+AG+ E Sbjct: 3 FTLAIVGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDLREGEGRIADLRFTVIDSAGLEE 62 Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330 TDD ++ + T VE AD+ L + + + +I KN + I K + Sbjct: 63 ATDDSLQGRMRRLTERAVEMADVCLFMIDARAGVLPADEVFADILRKKNANVILAANKGE 122 Query: 331 ---LYSTYTEEY------DHLISSFTGEGLEELINKIKSI 361 ++ E Y +S+ GEG+ EL++ ++ I Sbjct: 123 GKAADASILEAYALGLGEPIRMSAEHGEGMGELMDVLRPI 162 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 39/66 (59%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I ++G NAGKS+L N + ++ + G TRD +++ D G ++I DTAG+R+ Sbjct: 199 QIAVVGRPNAGKSTLINKIIGEERLLTGPEAGITRDAISVQQDWGGVPMRIFDTAGMRKK 258 Query: 281 DDIVEK 286 + EK Sbjct: 259 AKVQEK 264 >gi|332201131|gb|EGJ15202.1| GTP-binding protein engA [Streptococcus pneumoniae GA47901] Length = 436 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 44/172 (25%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRE 279 K ++G N GKSSL NA+ +D I + + GTTRD + D +G + DTAG+R+ Sbjct: 176 KFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDTDGQEFTMIDTAGMRK 235 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336 + + EK + R ++ +D++L++ IN+++ I Sbjct: 236 SGKVYENTEKYSVMRAMRAIDRSDVVLMV--INAEEGI---------------------- 271 Query: 337 EEYDHLISSF---TGEGLEELINKIKSI-------------LSNKFKKLPFS 372 EYD I+ F G+G+ ++NK ++ + +F+ LP++ Sbjct: 272 REYDKRIAGFAHEAGKGMIIVVNKWDTLEKDNHTMKNWEEDIREQFQYLPYA 323 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS+LFN +A + ++IV D+ G TRD + + + DT GI + D Sbjct: 6 IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRSFSMIDTGGIDDVD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + + +E AD+I+ + Sbjct: 66 APFMEQIKHQAEIAMEEADVIVFV 89 >gi|301164626|emb|CBW24185.1| conserved hypothetical protein [Bacteroides fragilis 638R] Length = 391 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 65/132 (49%), Gaps = 8/132 (6%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276 N I + G N+GKSSL NAL ++ A+V+DI GTT D + +++ G DTAG Sbjct: 8 NRLHIALFGKRNSGKSSLINALTNQNAALVSDIAGTTTDPVYQPMEIHGIGPCVFIDTAG 67 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILL------LKEINSKKEISFPKNIDFIFIGTKSD 330 + ++ I+RT + AD+ L+ L E E+ +NI ++ + K+D Sbjct: 68 FDDEGELGSLR-IERTLQAADKADIALMVCCDTELSEEQRWIELLKERNIPYLLVLNKAD 126 Query: 331 LYSTYTEEYDHL 342 L E D L Sbjct: 127 LLEKPDEVADKL 138 >gi|220924493|ref|YP_002499795.1| GTP-binding protein EngA [Methylobacterium nodulans ORS 2060] gi|219949100|gb|ACL59492.1| small GTP-binding protein [Methylobacterium nodulans ORS 2060] Length = 447 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 K+ I+G NAGKS+L N + ++ +V G TRD +++D + G +K+ DTAG+R Sbjct: 181 KVAIVGRPNAGKSTLINRMLGENRLLVGPEAGITRDSISLDWEWRGRRIKLHDTAGMRRR 240 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305 DD +EK + V A+++++L Sbjct: 241 ARVDDKLEKLAVSDGLRAVRFAEVVVVL 268 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/60 (45%), Positives = 35/60 (58%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN L + +A+V D PG TRD + L L I DTAG+ E D Sbjct: 6 VAIVGRPNVGKSTLFNRLVGRKLALVDDRPGVTRDRREGEARLGHLLFTIIDTAGLEEAD 65 >gi|148984151|ref|ZP_01817446.1| phosphoglycerate dehydrogenase-related protein [Streptococcus pneumoniae SP3-BS71] gi|147923440|gb|EDK74553.1| phosphoglycerate dehydrogenase-related protein [Streptococcus pneumoniae SP3-BS71] gi|301800517|emb|CBW33156.1| GTP-binding protein EngA [Streptococcus pneumoniae OXC141] Length = 436 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 44/172 (25%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRE 279 K ++G N GKSSL NA+ +D I + + GTTRD + D +G + DTAG+R+ Sbjct: 176 KFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDTDGQEFTMIDTAGMRK 235 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336 + + EK + R ++ +D++L++ IN+++ I Sbjct: 236 SGKVYENTEKYSVMRAMRAIDRSDVVLMV--INAEEGI---------------------- 271 Query: 337 EEYDHLISSF---TGEGLEELINKIKSI-------------LSNKFKKLPFS 372 EYD I+ F G+G+ ++NK ++ + +F+ LP++ Sbjct: 272 REYDKRIAGFAHEAGKGMIIVVNKWDTLEKDNHTMKNWEEDIREQFQYLPYA 323 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS+LFN +A + ++IV D+ G TRD + + + DT GI + D Sbjct: 6 IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRSFSMIDTGGIDDVD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + + +E AD+I+ + Sbjct: 66 APFMEQIKHQAEIAMEEADVIVFV 89 >gi|289423092|ref|ZP_06424907.1| ribosome-associated GTPase EngA [Peptostreptococcus anaerobius 653-L] gi|289156423|gb|EFD05073.1| ribosome-associated GTPase EngA [Peptostreptococcus anaerobius 653-L] Length = 439 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFN L ++IV D PG TRD + +++ I DT GI E+ Sbjct: 7 VAIVGRPNVGKSTLFNKLTGTKISIVEDTPGVTRDRIFGEVEWLNKYFTIIDTGGIEPES 66 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 DDI+ + + L V+ A +IL + Sbjct: 67 DDIIISQMRNQAMLAVDMAHVILFV 91 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I G NAGKSS+ N + ++ IV+ I GTTRD + + + DTAGIR Sbjct: 179 KVAITGKPNAGKSSILNNILGEERVIVSPIAGTTRDAIDTYFEQGDNKFLLIDTAGIRRR 238 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + VE+ + R+ V+ AD++L++ Sbjct: 239 SKVYENVERFSVIRSMSAVDRADVVLIV 266 >gi|78778772|ref|YP_396884.1| GTP-binding protein EngA [Prochlorococcus marinus str. MIT 9312] gi|123554591|sp|Q31CE7|DER_PROM9 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|78712271|gb|ABB49448.1| Small GTP-binding protein domain [Prochlorococcus marinus str. MIT 9312] Length = 457 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/85 (38%), Positives = 49/85 (57%), Gaps = 3/85 (3%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 I+G N GKSSL N+++ + AIV+DI GTT D + + KI DTAGIR ++ Sbjct: 181 IIGRPNVGKSSLLNSISGEKRAIVSDISGTTTDSIDTLIKKGDTQWKIVDTAGIRRKKNV 240 Query: 284 ---VEKEGIKRTFLEVENADLILLL 305 E GI R F ++ +D+ +L+ Sbjct: 241 KYGTEFFGINRAFKSIDRSDVCVLV 265 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 35/89 (39%), Positives = 47/89 (52%), Gaps = 1/89 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS+L N L + + AIV D PG TRD + G +I DT G+ D Sbjct: 6 IAIIGRPNVGKSTLVNRLCQSNDAIVFDKPGVTRDRTYQNASWGGKEFQIVDTGGLVFDD 65 Query: 282 DIVEKEGIK-RTFLEVENADLILLLKEIN 309 D I+ + FL +E A L LL+ + N Sbjct: 66 DSEFLPEIRAQVFLALEEASLALLVVDGN 94 >gi|265767007|ref|ZP_06094836.1| GTP-binding protein Era [Bacteroides sp. 2_1_16] gi|263253384|gb|EEZ24860.1| GTP-binding protein Era [Bacteroides sp. 2_1_16] Length = 391 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 66/132 (50%), Gaps = 8/132 (6%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI-SDTAG 276 N I + G N+GKSSL NAL ++ A+V+DI GTT D + +++ G + DTAG Sbjct: 8 NRLHIALFGKRNSGKSSLINALTNQNAALVSDIAGTTTDPVYQPMEIHGIGPCVFIDTAG 67 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILL------LKEINSKKEISFPKNIDFIFIGTKSD 330 + ++ I+RT + AD+ L+ L E E+ +NI ++ + K+D Sbjct: 68 FDDEGELGSLR-IERTLQAADKADIALMVCCDTELSEEQRWIELLKERNIPYLLVLNKAD 126 Query: 331 LYSTYTEEYDHL 342 L E D L Sbjct: 127 LLEKPDEVADKL 138 >gi|148994026|ref|ZP_01823382.1| phosphoglycerate dehydrogenase-related protein [Streptococcus pneumoniae SP9-BS68] gi|168484900|ref|ZP_02709845.1| GTP-binding protein EngA [Streptococcus pneumoniae CDC1873-00] gi|168488574|ref|ZP_02712773.1| GTP-binding protein EngA [Streptococcus pneumoniae SP195] gi|307127923|ref|YP_003879954.1| GTP-binding protein EngA [Streptococcus pneumoniae 670-6B] gi|147927493|gb|EDK78521.1| phosphoglycerate dehydrogenase-related protein [Streptococcus pneumoniae SP9-BS68] gi|172041949|gb|EDT49995.1| GTP-binding protein EngA [Streptococcus pneumoniae CDC1873-00] gi|183572668|gb|EDT93196.1| GTP-binding protein EngA [Streptococcus pneumoniae SP195] gi|306484985|gb|ADM91854.1| GTP-binding protein EngA [Streptococcus pneumoniae 670-6B] gi|332072538|gb|EGI83021.1| GTP-binding protein engA [Streptococcus pneumoniae GA17570] gi|332072881|gb|EGI83362.1| GTP-binding protein engA [Streptococcus pneumoniae GA17545] Length = 436 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 44/172 (25%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRE 279 K ++G N GKSSL NA+ +D I + + GTTRD + D +G + DTAG+R+ Sbjct: 176 KFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDTDGQEFTMIDTAGMRK 235 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336 + + EK + R ++ +D++L++ IN+++ I Sbjct: 236 SGKVYENTEKYSVMRAMRAIDRSDVVLMV--INAEEGI---------------------- 271 Query: 337 EEYDHLISSF---TGEGLEELINKIKSI-------------LSNKFKKLPFS 372 EYD I+ F G+G+ ++NK ++ + +F+ LP++ Sbjct: 272 REYDKRIAGFAHEAGKGMIIVVNKWDTLEKDNHTMKNWEEDIREQFQYLPYA 323 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS+LFN +A + ++IV D+ G TRD + + + DT GI + D Sbjct: 6 IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRSFSMIDTGGIDDVD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + + +E AD+I+ + Sbjct: 66 APFMEQIKHQAEIAMEEADVIVFV 89 >gi|307707079|ref|ZP_07643876.1| small GTP-binding domain protein [Streptococcus mitis SK321] gi|307617605|gb|EFN96775.1| small GTP-binding domain protein [Streptococcus mitis SK321] Length = 436 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 44/172 (25%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRE 279 K ++G N GKSSL NA+ +D I + + GTTRD + D +G + DTAG+R+ Sbjct: 176 KFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDTDGQEFTMIDTAGMRK 235 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336 + + EK + R ++ +D++L++ IN+++ I Sbjct: 236 SGKVYENTEKYSVMRAMRAIDRSDVVLMV--INAEEGI---------------------- 271 Query: 337 EEYDHLISSF---TGEGLEELINKIKSI-------------LSNKFKKLPFS 372 EYD I+ F G+G+ ++NK ++ + +F+ LP++ Sbjct: 272 REYDKRIAGFAHEAGKGMIIVVNKWDTLEKDNHTMKSWEEDIREQFQYLPYA 323 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS+LFN +A + ++IV D+ G TRD + + + DT GI + D Sbjct: 6 IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRSFSMIDTGGIDDVD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + + +E AD+I+ + Sbjct: 66 APFMEQIKHQAEIAMEEADVIVFV 89 >gi|225024393|ref|ZP_03713585.1| hypothetical protein EIKCOROL_01268 [Eikenella corrodens ATCC 23834] gi|224942774|gb|EEG23983.1| hypothetical protein EIKCOROL_01268 [Eikenella corrodens ATCC 23834] Length = 485 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/96 (32%), Positives = 59/96 (61%), Gaps = 5/96 (5%) Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---E 279 ++G N GKS+L NA+ ++ I D+ GTTRD + ID + +G I DTAG+R + Sbjct: 179 AVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSIHIDFERDGKPFTIIDTAGVRRRGK 238 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 ++ VEK + + VE +++ +L+ ++++++I+ Sbjct: 239 VEEAVEKFSVIKAMQAVEASNVAVLV--LDAQQDIA 272 Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280 I ++G N GKS+LFN L + A+V D+PG TRD + + DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVVDTGGFEPVV 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 D + E K+T V+ AD ++ L Sbjct: 65 DSGILHEMAKQTLQAVDEADAVIFL 89 >gi|149006625|ref|ZP_01830324.1| phosphoglycerate dehydrogenase-related protein [Streptococcus pneumoniae SP18-BS74] gi|147761923|gb|EDK68886.1| phosphoglycerate dehydrogenase-related protein [Streptococcus pneumoniae SP18-BS74] Length = 358 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 44/172 (25%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRE 279 K ++G N GKSSL NA+ +D I + + GTTRD + D +G + DTAG+R+ Sbjct: 176 KFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDTDGQEFTMIDTAGMRK 235 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336 + + EK + R ++ +D++L++ IN+++ I Sbjct: 236 SGKVYENTEKYSVMRAMRAIDRSDVVLMV--INAEEGI---------------------- 271 Query: 337 EEYDHLISSF---TGEGLEELINKIKSI-------------LSNKFKKLPFS 372 EYD I+ F G+G+ ++NK ++ + +F+ LP++ Sbjct: 272 REYDKRIAGFAHEAGKGMIIVVNKWDTLEKDNHTMKNWEEDIREQFQYLPYA 323 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS+LFN +A + ++IV D+ G TRD + + + DT GI + D Sbjct: 6 IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRSFSMIDTGGIDDVD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + + +E AD+I+ + Sbjct: 66 APFMEQIKHQAEIAMEEADVIVFV 89 >gi|313678251|ref|YP_004055991.1| GTP-binding protein Era [Mycoplasma bovis PG45] gi|312950737|gb|ADR25332.1| GTP-binding protein Era [Mycoplasma bovis PG45] Length = 290 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 47/88 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSL N + K D+AIV+++P TTRD + Y DT GI + Sbjct: 6 ISILGRPNVGKSSLLNKIIKYDLAIVSNVPQTTRDQIMGVYTENDYQFVFVDTPGIHKPL 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN 309 +++ + K F + + D IL L +N Sbjct: 66 NLLGESLNKEAFSSINDIDCILFLTPVN 93 >gi|15901543|ref|NP_346147.1| GTP-binding protein EngA [Streptococcus pneumoniae TIGR4] gi|15903596|ref|NP_359146.1| GTP-binding protein EngA [Streptococcus pneumoniae R6] gi|111657418|ref|ZP_01408170.1| hypothetical protein SpneT_02001366 [Streptococcus pneumoniae TIGR4] gi|116515879|ref|YP_816974.1| GTP-binding protein EngA [Streptococcus pneumoniae D39] gi|148989364|ref|ZP_01820732.1| phosphoglycerate dehydrogenase-related protein [Streptococcus pneumoniae SP6-BS73] gi|148997762|ref|ZP_01825326.1| phosphoglycerate dehydrogenase-related protein [Streptococcus pneumoniae SP11-BS70] gi|149011426|ref|ZP_01832673.1| phosphoglycerate dehydrogenase-related protein [Streptococcus pneumoniae SP19-BS75] gi|149020788|ref|ZP_01835317.1| phosphoglycerate dehydrogenase-related protein [Streptococcus pneumoniae SP23-BS72] gi|168487543|ref|ZP_02712051.1| GTP-binding protein EngA [Streptococcus pneumoniae CDC1087-00] gi|168491409|ref|ZP_02715552.1| GTP-binding protein EngA [Streptococcus pneumoniae CDC0288-04] gi|168493616|ref|ZP_02717759.1| GTP-binding protein EngA [Streptococcus pneumoniae CDC3059-06] gi|168575101|ref|ZP_02721064.1| GTP-binding protein EngA [Streptococcus pneumoniae MLV-016] gi|169832823|ref|YP_001695085.1| GTP-binding protein EngA [Streptococcus pneumoniae Hungary19A-6] gi|182684651|ref|YP_001836398.1| GTP-binding protein EngA [Streptococcus pneumoniae CGSP14] gi|194398265|ref|YP_002038320.1| GTP-binding protein EngA [Streptococcus pneumoniae G54] gi|221232445|ref|YP_002511598.1| GTP-binding protein EngA [Streptococcus pneumoniae ATCC 700669] gi|225855139|ref|YP_002736651.1| GTP-binding protein EngA [Streptococcus pneumoniae JJA] gi|225857322|ref|YP_002738833.1| GTP-binding protein EngA [Streptococcus pneumoniae P1031] gi|225859462|ref|YP_002740972.1| GTP-binding protein EngA [Streptococcus pneumoniae 70585] gi|225861533|ref|YP_002743042.1| GTP-binding protein EngA [Streptococcus pneumoniae Taiwan19F-14] gi|237649250|ref|ZP_04523502.1| GTP-binding protein EngA [Streptococcus pneumoniae CCRI 1974] gi|237822010|ref|ZP_04597855.1| GTP-binding protein EngA [Streptococcus pneumoniae CCRI 1974M2] gi|289167434|ref|YP_003445703.1| phosphoglycerate dehydrogenase-related protein, GTP-binding protein [Streptococcus mitis B6] gi|298229308|ref|ZP_06962989.1| GTP-binding protein EngA [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255748|ref|ZP_06979334.1| GTP-binding protein EngA [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503453|ref|YP_003725393.1| GTP-binding protein EngA [Streptococcus pneumoniae TCH8431/19A] gi|303254319|ref|ZP_07340427.1| GTP-binding protein EngA [Streptococcus pneumoniae BS455] gi|303258643|ref|ZP_07344623.1| GTP-binding protein EngA [Streptococcus pneumoniae SP-BS293] gi|303261806|ref|ZP_07347752.1| GTP-binding protein EngA [Streptococcus pneumoniae SP14-BS292] gi|303263670|ref|ZP_07349592.1| GTP-binding protein EngA [Streptococcus pneumoniae BS397] gi|303266846|ref|ZP_07352725.1| GTP-binding protein EngA [Streptococcus pneumoniae BS457] gi|303269910|ref|ZP_07355651.1| GTP-binding protein EngA [Streptococcus pneumoniae BS458] gi|307068334|ref|YP_003877300.1| putative GTPase [Streptococcus pneumoniae AP200] gi|307705427|ref|ZP_07642284.1| small GTP-binding domain protein [Streptococcus mitis SK597] gi|307707485|ref|ZP_07643967.1| GTP-binding protein EngA [Streptococcus mitis NCTC 12261] gi|307709642|ref|ZP_07646094.1| small GTP-binding domain protein [Streptococcus mitis SK564] gi|322377454|ref|ZP_08051945.1| ribosome-associated GTPase EngA [Streptococcus sp. M334] gi|54037053|sp|P64063|DER_STRR6 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|54040976|sp|P64062|DER_STRPN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|122278180|sp|Q04J64|DER_STRP2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|238688353|sp|B1I766|DER_STRPI RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|238690849|sp|B5E756|DER_STRP4 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|238691183|sp|B2IRW4|DER_STRPS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|254783168|sp|C1C8U6|DER_STRP7 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|254783169|sp|B8ZMH4|DER_STRPJ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|254783171|sp|C1CFT0|DER_STRZJ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|254783172|sp|C1CM45|DER_STRZP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|254783173|sp|C1CSX0|DER_STRZT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|14973204|gb|AAK75787.1| phosphoglycerate dehydrogenase-related protein [Streptococcus pneumoniae TIGR4] gi|15459218|gb|AAL00357.1| Phosphoglycerate dehydrogenase [Streptococcus pneumoniae R6] gi|116076455|gb|ABJ54175.1| phosphoglycerate dehydrogenase-related protein [Streptococcus pneumoniae D39] gi|147756261|gb|EDK63303.1| phosphoglycerate dehydrogenase-related protein [Streptococcus pneumoniae SP11-BS70] gi|147764416|gb|EDK71347.1| phosphoglycerate dehydrogenase-related protein [Streptococcus pneumoniae SP19-BS75] gi|147925114|gb|EDK76194.1| phosphoglycerate dehydrogenase-related protein [Streptococcus pneumoniae SP6-BS73] gi|147930429|gb|EDK81412.1| phosphoglycerate dehydrogenase-related protein [Streptococcus pneumoniae SP23-BS72] gi|168995325|gb|ACA35937.1| GTP-binding protein EngA [Streptococcus pneumoniae Hungary19A-6] gi|182629985|gb|ACB90933.1| GTP-binding protein EngA [Streptococcus pneumoniae CGSP14] gi|183569654|gb|EDT90182.1| GTP-binding protein EngA [Streptococcus pneumoniae CDC1087-00] gi|183574158|gb|EDT94686.1| GTP-binding protein EngA [Streptococcus pneumoniae CDC0288-04] gi|183576280|gb|EDT96808.1| GTP-binding protein EngA [Streptococcus pneumoniae CDC3059-06] gi|183578800|gb|EDT99328.1| GTP-binding protein EngA [Streptococcus pneumoniae MLV-016] gi|194357932|gb|ACF56380.1| ribosome-associated GTPase EngA [Streptococcus pneumoniae G54] gi|220674906|emb|CAR69481.1| GTP-binding protein EngA [Streptococcus pneumoniae ATCC 700669] gi|225721482|gb|ACO17336.1| GTP-binding protein EngA [Streptococcus pneumoniae 70585] gi|225723540|gb|ACO19393.1| ribosome-associated GTPase EngA [Streptococcus pneumoniae JJA] gi|225724777|gb|ACO20629.1| ribosome-associated GTPase EngA [Streptococcus pneumoniae P1031] gi|225727275|gb|ACO23126.1| ribosome-associated GTPase EngA [Streptococcus pneumoniae Taiwan19F-14] gi|288907001|emb|CBJ21835.1| phosphoglycerate dehydrogenase-related protein, GTP-binding protein [Streptococcus mitis B6] gi|298239048|gb|ADI70179.1| GTP-binding protein EngA [Streptococcus pneumoniae TCH8431/19A] gi|301794686|emb|CBW37137.1| GTP-binding protein EngA [Streptococcus pneumoniae INV104] gi|301802409|emb|CBW35163.1| GTP-binding protein EngA [Streptococcus pneumoniae INV200] gi|302598670|gb|EFL65708.1| GTP-binding protein EngA [Streptococcus pneumoniae BS455] gi|302636889|gb|EFL67378.1| GTP-binding protein EngA [Streptococcus pneumoniae SP14-BS292] gi|302640144|gb|EFL70599.1| GTP-binding protein EngA [Streptococcus pneumoniae SP-BS293] gi|302640564|gb|EFL70970.1| GTP-binding protein EngA [Streptococcus pneumoniae BS458] gi|302643614|gb|EFL73882.1| GTP-binding protein EngA [Streptococcus pneumoniae BS457] gi|302646708|gb|EFL76933.1| GTP-binding protein EngA [Streptococcus pneumoniae BS397] gi|306409871|gb|ADM85298.1| Predicted GTPase [Streptococcus pneumoniae AP200] gi|307616437|gb|EFN95628.1| GTP-binding protein EngA [Streptococcus mitis NCTC 12261] gi|307619540|gb|EFN98664.1| small GTP-binding domain protein [Streptococcus mitis SK564] gi|307621026|gb|EFO00106.1| small GTP-binding domain protein [Streptococcus mitis SK597] gi|321281654|gb|EFX58663.1| ribosome-associated GTPase EngA [Streptococcus sp. M334] gi|327389894|gb|EGE88239.1| GTP-binding protein engA [Streptococcus pneumoniae GA04375] gi|332074047|gb|EGI84525.1| GTP-binding protein engA [Streptococcus pneumoniae GA41301] gi|332199734|gb|EGJ13809.1| GTP-binding protein engA [Streptococcus pneumoniae GA41317] gi|332200267|gb|EGJ14340.1| GTP-binding protein engA [Streptococcus pneumoniae GA47368] Length = 436 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 44/172 (25%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRE 279 K ++G N GKSSL NA+ +D I + + GTTRD + D +G + DTAG+R+ Sbjct: 176 KFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDTDGQEFTMIDTAGMRK 235 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336 + + EK + R ++ +D++L++ IN+++ I Sbjct: 236 SGKVYENTEKYSVMRAMRAIDRSDVVLMV--INAEEGI---------------------- 271 Query: 337 EEYDHLISSF---TGEGLEELINKIKSI-------------LSNKFKKLPFS 372 EYD I+ F G+G+ ++NK ++ + +F+ LP++ Sbjct: 272 REYDKRIAGFAHEAGKGMIIVVNKWDTLEKDNHTMKNWEEDIREQFQYLPYA 323 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS+LFN +A + ++IV D+ G TRD + + + DT GI + D Sbjct: 6 IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRSFSMIDTGGIDDVD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + + +E AD+I+ + Sbjct: 66 APFMEQIKHQAEIAMEEADVIVFV 89 >gi|256823051|ref|YP_003147014.1| small GTP-binding protein [Kangiella koreensis DSM 16069] gi|256796590|gb|ACV27246.1| small GTP-binding protein [Kangiella koreensis DSM 16069] Length = 467 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 54/91 (59%), Gaps = 3/91 (3%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 G K+ I+G N GKS+L N ++ +V D+PGTTRD + I+++ + DTAG+ Sbjct: 179 QGLKLAIVGRPNVGKSTLVNRFLGEERVVVYDLPGTTRDSIYIEMERRDKKYTLIDTAGV 238 Query: 278 R---ETDDIVEKEGIKRTFLEVENADLILLL 305 R + + VEK + +T ++++++ +++ Sbjct: 239 RRRGKVKETVEKFSVLKTLQAIDDSNVSIMV 269 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L K A+V ++PG TRD L+G + DT GI + Sbjct: 5 IALVGRPNVGKSTLFNRLTKSRDALVANLPGLTRDRQYGQATLKGQKFIVVDTGGIAGDE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + ++ ++ L + A+++L L Sbjct: 65 EGIDGLMAGQSLLAITEANIVLFL 88 >gi|163797497|ref|ZP_02191448.1| GTP-binding protein engA [alpha proteobacterium BAL199] gi|159177246|gb|EDP61805.1| GTP-binding protein engA [alpha proteobacterium BAL199] Length = 467 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/96 (35%), Positives = 53/96 (55%), Gaps = 3/96 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ ++G N GKS+LFN L A+V D PG TRD D + ++ DTAG+ + Sbjct: 4 KVAVIGRPNVGKSTLFNRLTGTRHALVDDTPGVTRDRREGDGRIADLSFRVIDTAGLEDA 63 Query: 281 -DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 DD +E ++T V ADL+ +L I+++ I+ Sbjct: 64 FDDSLEARMRRQTERAVAEADLVFML--IDARAGIT 97 Score = 43.1 bits (100), Expect = 0.086, Method: Compositional matrix adjust. Identities = 21/66 (31%), Positives = 35/66 (53%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKS+L N L +D + G TRD + ++ +++ DTAG+R Sbjct: 201 RLAIVGRPNVGKSTLVNRLIGEDRLLTGPEAGITRDAIEVEWQYRDRPIRLVDTAGMRRK 260 Query: 281 DDIVEK 286 + EK Sbjct: 261 ARVQEK 266 >gi|152995389|ref|YP_001340224.1| small GTP-binding protein [Marinomonas sp. MWYL1] gi|189037150|sp|A6VV10|DER_MARMS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|150836313|gb|ABR70289.1| small GTP-binding protein [Marinomonas sp. MWYL1] Length = 445 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 75/155 (48%), Gaps = 19/155 (12%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L + A+V D PG TRD D L + + DT GI + Sbjct: 5 IALVGRPNVGKSTLFNQLTRSRDALVADYPGLTRDRKYGDGKLGEHEFIVIDTGGISGDE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKEI------SFPKNIDFIFIGTK--- 328 ++++ +++ L +E AD++L L + +N E+ K + + T Sbjct: 65 QGIDEKMARQSLLAIEEADVVLFLVDGRHGLNPADEMIASHLRRSNKQVSLVVNKTDGIN 124 Query: 329 -----SDLYSTYTEEYDHLISSFTGEGLEELINKI 358 +D YS E H I++ G+G+ LI+K+ Sbjct: 125 EDIALADFYSLGFGEL-HPIAASHGKGVHVLIDKV 158 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 3/90 (3%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G +I ++G N GKS+L N + +D +V D+PGTTRD + I + DTAGIR Sbjct: 179 GIRIGVVGRPNVGKSTLVNRMLGEDRVVVYDMPGTTRDSVYIPYVRNDKEYTLIDTAGIR 238 Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLL 305 + VEK I + +++A++++++ Sbjct: 239 RRKHVKEAVEKFSIVKALQAIQDANVVIVV 268 >gi|225018908|ref|ZP_03708100.1| hypothetical protein CLOSTMETH_02859 [Clostridium methylpentosum DSM 5476] gi|224948314|gb|EEG29523.1| hypothetical protein CLOSTMETH_02859 [Clostridium methylpentosum DSM 5476] Length = 397 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/186 (25%), Positives = 88/186 (47%), Gaps = 34/186 (18%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276 N I I G N+GKSSL NA+ +++A+V+D+ GTT D + +++ G + DTAG Sbjct: 11 NRLHIAIFGKRNSGKSSLINAITGQEIALVSDVAGTTTDPVYKAMEIHGIGPCMLIDTAG 70 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL-------------KEINSKKEISFPKNIDFI 323 +T + E+ +++T ++ D+ ++L +E+N +K I + Sbjct: 71 FDDTGKLGEQR-VEKTRQAMDKTDVAIVLFGDCYTDYEQRWIEELNKRK-------IPVV 122 Query: 324 FIGTKSDLYSTYTEEYDH----------LISSFTGEGLEELINKIKSILSNKFKKLPFSI 373 + K D+ E H + S+ + G+ ELI+++ L F++ SI Sbjct: 123 AVINKGDILENIPEISQHVWEKFGLKPIVTSALSRSGIRELIDQLIRALPEDFEQK--SI 180 Query: 374 PSHKRH 379 +H H Sbjct: 181 TAHLVH 186 >gi|223043265|ref|ZP_03613312.1| ribosome-associated GTPase EngA [Staphylococcus capitis SK14] gi|222443476|gb|EEE49574.1| ribosome-associated GTPase EngA [Staphylococcus capitis SK14] Length = 436 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSL NA+ ++ IV+++ GTTRD + + EG + DTAG+R+ Sbjct: 177 RLSIIGRPNVGKSSLVNAILGEERVIVSNVAGTTRDAVDTEYSYEGQDYVLIDTAGMRKK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + EK + R +E ++++L++ Sbjct: 237 GKVYESTEKYSVLRALKAIERSNVVLVI 264 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 45/84 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN + + V+IV D PG TRD + + + I DT GI D Sbjct: 6 VAIVGKPNVGKSTIFNRVVGERVSIVEDTPGVTRDRIYSSGEWLTHEFNIIDTGGIEIGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + + + ++ AD+I+ + Sbjct: 66 APFQTQIRAQAEIAIDEADVIIFM 89 >gi|218887353|ref|YP_002436674.1| GTP-binding protein EngA [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758307|gb|ACL09206.1| small GTP-binding protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 506 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ +LG NAGKSSL NAL + IV+D+ GTTRD + + + + DTAG+R Sbjct: 244 RLAMLGRPNAGKSSLVNALTGQQRMIVSDMAGTTRDSVDVSFESGDKTITFVDTAGVRRR 303 Query: 281 D---DIVEKEGIKRTFLEVENADLILLL 305 D VE+ + + A + LL+ Sbjct: 304 SRITDSVERYSVNASLKSTTKAHVTLLV 331 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 1/58 (1%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGI 277 KI ++G N GKS+LFN L + + AI D PG TRD + + G I DT GI Sbjct: 19 KIALVGRPNVGKSTLFNRLIRANRAITHDRPGVTRDRMEGQVRSRGKQTFAIVDTGGI 76 >gi|303239164|ref|ZP_07325693.1| small GTP-binding protein [Acetivibrio cellulolyticus CD2] gi|302593209|gb|EFL62928.1| small GTP-binding protein [Acetivibrio cellulolyticus CD2] Length = 407 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/70 (45%), Positives = 46/70 (65%), Gaps = 3/70 (4%) Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISD 273 + N I I G NAGKS+L NAL +D+A+V+++PGTT D + T++L G +V I D Sbjct: 6 VGNRLHIAIFGRRNAGKSTLINALTGQDIAVVSNVPGTTTDPVYKTMELLPLGPVV-IID 64 Query: 274 TAGIRETDDI 283 TAGI + D+ Sbjct: 65 TAGIDDVGDL 74 >gi|60683114|ref|YP_213258.1| hypothetical protein BF3665 [Bacteroides fragilis NCTC 9343] gi|60494548|emb|CAH09347.1| conserved hypothetical protein [Bacteroides fragilis NCTC 9343] Length = 391 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 66/132 (50%), Gaps = 8/132 (6%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI-SDTAG 276 N I + G N+GKSSL NAL ++ A+V+DI GTT D + +++ G + DTAG Sbjct: 8 NRLHIALFGKRNSGKSSLINALTNQNAALVSDIAGTTTDPVYQPMEIHGIGPCVFIDTAG 67 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILL------LKEINSKKEISFPKNIDFIFIGTKSD 330 + ++ I+RT + AD+ L+ L E E+ +NI ++ + K+D Sbjct: 68 FDDEGELGSLR-IERTLQAADKADIALMVCCDTELSEEQRWIELLKERNIPYLLVLNKAD 126 Query: 331 LYSTYTEEYDHL 342 L E D L Sbjct: 127 LLEKPDEVADKL 138 >gi|53715179|ref|YP_101171.1| putative GTPase [Bacteroides fragilis YCH46] gi|253566314|ref|ZP_04843768.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|52218044|dbj|BAD50637.1| putative GTPase [Bacteroides fragilis YCH46] gi|251945418|gb|EES85856.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] Length = 391 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 66/132 (50%), Gaps = 8/132 (6%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI-SDTAG 276 N I + G N+GKSSL NAL ++ A+V+DI GTT D + +++ G + DTAG Sbjct: 8 NRLHIALFGKRNSGKSSLINALTNQNAALVSDIAGTTTDPVYQPMEIHGIGPCVFIDTAG 67 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILL------LKEINSKKEISFPKNIDFIFIGTKSD 330 + ++ I+RT + AD+ L+ L E E+ +NI ++ + K+D Sbjct: 68 FDDEGELGSLR-IERTLQAADKADIALMVCCDTELSEEQRWIELLKERNIPYLLVLNKAD 126 Query: 331 LYSTYTEEYDHL 342 L E D L Sbjct: 127 LLEKPDEVADKL 138 >gi|297608564|ref|NP_001061774.2| Os08g0407000 [Oryza sativa Japonica Group] gi|255678439|dbj|BAF23688.2| Os08g0407000 [Oryza sativa Japonica Group] Length = 75 Score = 55.1 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 27/48 (56%), Positives = 36/48 (75%) Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEG 288 + + AIVT+I GTTRDV+ ++ + G + + DTAGIRETDDIVEK G Sbjct: 5 QSERAIVTEIAGTTRDVVEANVSIHGIPITLLDTAGIRETDDIVEKIG 52 >gi|227822913|ref|YP_002826885.1| GTP-binding protein EngA [Sinorhizobium fredii NGR234] gi|254783163|sp|C3MG60|DER_RHISN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|227341914|gb|ACP26132.1| GTP-binding protein, essential for cell growth [Sinorhizobium fredii NGR234] Length = 476 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 1/87 (1%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 + + I+G N GKS+LFN L K +A+V D PG TRD D L +I DTAG+ + Sbjct: 3 FTVAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGDAKLVDLKFRIIDTAGLEQ 62 Query: 280 T-DDIVEKEGIKRTFLEVENADLILLL 305 + D ++ +T ++ ADL L + Sbjct: 63 SAPDSLQGRMWAQTEQAIDEADLSLFV 89 Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 38/66 (57%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G NAGKS+L N +D + G TRD ++++ + G +K+ DTAG+R Sbjct: 206 RVAIVGRPNAGKSTLINRFLGEDRLLTGPEAGITRDSISVEWEWRGRTIKMFDTAGMRRK 265 Query: 281 DDIVEK 286 + EK Sbjct: 266 AKVQEK 271 >gi|39997323|ref|NP_953274.1| GTP-binding protein EngA [Geobacter sulfurreducens PCA] gi|81832003|sp|Q74AX4|DER_GEOSL RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|39984214|gb|AAR35601.1| GTP-binding protein Era, putative [Geobacter sulfurreducens PCA] gi|298506260|gb|ADI84983.1| GTPase EngA [Geobacter sulfurreducens KN400] Length = 438 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 3/110 (2%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L +++ + + Q RN KI ++G N GKSSL N L + + PGTTRD + Sbjct: 156 LMDEVVAALPQRTTSPEERNATKIAVVGRPNVGKSSLVNRLLGYERVVANPTPGTTRDSV 215 Query: 259 TIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLL 305 + DTAGIR +T +EK + + +E AD++L++ Sbjct: 216 DTWFTCNKKRYLLIDTAGIRRKGKTTQKIEKYSVVDSLRSIERADVVLIV 265 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 7/88 (7%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV---LTIDLDLEGYLVKISDTAGIR 278 + I+G N GKS+LFN L + AIV D+PG TRD D+ L+ DT G Sbjct: 6 VAIVGRPNVGKSTLFNRLVGRRKAIVDDMPGVTRDRNYETVTRFDVPFILI---DTGGFE 62 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305 E+ D + ++ +++ L +E AD+IL L Sbjct: 63 PESSDRLLQQMREQSRLAMEEADVILFL 90 >gi|221485521|gb|EEE23802.1| GTP-binding protein, putative [Toxoplasma gondii GT1] Length = 499 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 60/240 (25%), Positives = 100/240 (41%), Gaps = 42/240 (17%) Query: 169 RSFIEA--DLDFSEEEDVQNFSSKEVLNDILFLKNDISSH--ISQGKLGEIIRNGY-KIV 223 R F+ A +F ED+ S ++ + I++H + L ++ N + ++ Sbjct: 242 RPFVHAFQPREFLNREDLPWLSPEQRKYSRILFGKPIAAHPVLVAQTLHKLPHNPWPQVA 301 Query: 224 ILGHSNAGKSSLFNALAK-KDVAIVTDIPGTTRDVLTIDL-------DLEGY-LVKISDT 274 +GHSN GKSSL NAL +DVA PG TR + T DL DL GY ++ Sbjct: 302 AVGHSNVGKSSLLNALMHGRDVARSCSKPGRTRHLFTFDLGNHLSLVDLPGYGFARVKPQ 361 Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP----KNIDFIFIGTKSD 330 ++E I+ +E R+ L+ K + + E + KN+ F + TK+D Sbjct: 362 --LKEEWAILIEEYFTRSKQLRRVLSLVDATKGVEALDERLWQLLAEKNLPFQVVLTKAD 419 Query: 331 LYS----------------------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKK 368 L + T + H +SS G+ EL + ++ S+ K+ Sbjct: 420 LLTARELHAAMFDVLSRLQTVEKKETLLHPFVHAVSSRHNHGIPELRASLAAVASDWRKR 479 >gi|312139844|ref|YP_004007180.1| gtpase [Rhodococcus equi 103S] gi|325674279|ref|ZP_08153968.1| ribosome-associated GTPase EngA [Rhodococcus equi ATCC 33707] gi|311889183|emb|CBH48497.1| GTPase [Rhodococcus equi 103S] gi|325554959|gb|EGD24632.1| ribosome-associated GTPase EngA [Rhodococcus equi ATCC 33707] Length = 481 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 17/158 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+L N + + A+V DIPG TRD ++ D + G + DT G Sbjct: 45 LAVVGRPNVGKSTLVNRIIGRREAVVEDIPGVTRDRVSYDANWAGRRFMVQDTGGWEPDA 104 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSDLYS 333 +++ ++ L + AD ILL+ + + + I + K D Sbjct: 105 KGLQQSVARQAELAMNTADAILLVVDAVVGATATDEAAVRVLRRSKTPVILVANKVDDAR 164 Query: 334 TYTEEY---------DHLISSFTGEGLEELINKIKSIL 362 T E H++S+ G G +L++++ +L Sbjct: 165 TEAEAAALWSLGLGEPHMVSATHGRGTGDLLDEVLRVL 202 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 33/100 (33%), Positives = 57/100 (57%), Gaps = 9/100 (9%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ ++G N GKSSL N L+ + ++V D+ GTT D + ++L G + K DTAG+R+ Sbjct: 217 RVALVGKPNVGKSSLLNKLSGDERSVVHDVAGTTVDPVDSLVELGGKVWKFVDTAGLRKK 276 Query: 281 DDIVEKEGIK-----RTFLEVENADLILLLKEINSKKEIS 315 + G + RT +E A++ +LL I++ K I+ Sbjct: 277 --VSHASGHEFYASLRTKSAIEAAEVAILL--IDASKPIT 312 >gi|21909785|ref|NP_664053.1| GTP-binding protein EngA [Streptococcus pyogenes MGAS315] gi|28896522|ref|NP_802872.1| GTP-binding protein EngA [Streptococcus pyogenes SSI-1] gi|26006710|sp|Q8K8J8|DER_STRP3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|21903970|gb|AAM78856.1| putative phosphoglycerate dehydrogenase [Streptococcus pyogenes MGAS315] gi|28811776|dbj|BAC64705.1| putative phosphoglycerate dehydrogenase [Streptococcus pyogenes SSI-1] Length = 436 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 71/145 (48%), Gaps = 31/145 (21%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRETDD 282 ++G N GKSSL NA+ +D I + + GTTRD + D +G + DTAG+R++ Sbjct: 179 LIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDADGQEFTMIDTAGMRKSGK 238 Query: 283 I---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY 339 I EK + R ++ +D++L++ IN+++ I EY Sbjct: 239 IYENTEKYSVMRAMRAIDRSDVVLMV--INAEEGI----------------------REY 274 Query: 340 DHLISSF---TGEGLEELINKIKSI 361 D I+ F G+G+ ++NK +I Sbjct: 275 DKRIAGFAHEAGKGMIIVVNKWDAI 299 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN +A + ++IV D+ G TRD + + + DT GI + D Sbjct: 6 VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRQFSLIDTGGIDDVD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + + +E AD+I+ + Sbjct: 66 APFMEQIKHQAQIAMEEADVIVFV 89 >gi|229029283|ref|ZP_04185373.1| GTP-binding protein engA [Bacillus cereus AH1271] gi|229172241|ref|ZP_04299805.1| GTP-binding protein engA [Bacillus cereus MM3] gi|228611229|gb|EEK68487.1| GTP-binding protein engA [Bacillus cereus MM3] gi|228732031|gb|EEL82923.1| GTP-binding protein engA [Bacillus cereus AH1271] Length = 436 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 49/85 (57%), Gaps = 3/85 (3%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 ++G N GKSSL NAL ++ IV++I GTTRD + +G I DTAG+R+ + Sbjct: 180 LIGRPNVGKSSLVNALLGQERVIVSNIAGTTRDAVDTPYSKDGQDYVIIDTAGMRKKGKV 239 Query: 284 ---VEKEGIKRTFLEVENADLILLL 305 EK + R +E +D++L++ Sbjct: 240 YESTEKYSVLRALRAIERSDVVLVV 264 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS++FN + + V+IV DIPG TRD + + + I DT GI D Sbjct: 6 IAIVGRPNVGKSTIFNRIVGERVSIVEDIPGITRDRIYSAGEWLNHEFNIIDTGGIDIGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + ++ + ++ AD+I+ + Sbjct: 66 EPFLTQIRQQAEVAIDEADVIIFM 89 >gi|145579207|pdb|2DYK|A Chain A, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga From Thermus Thermophilus Hb8 gi|145579208|pdb|2DYK|B Chain B, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga From Thermus Thermophilus Hb8 Length = 161 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 51/160 (31%), Positives = 78/160 (48%), Gaps = 26/160 (16%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGI 277 +K+VI+G N GKSSLFN L KK A+V D+PG TRD+ ++ D +L + DT G+ Sbjct: 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFL--LVDTGGL 59 Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP----------KNIDFIFIGT 327 D EK+ ++ +E+A+++L ++ + E++ K I + T Sbjct: 60 WSGDKW-EKKIQEKVDRALEDAEVVLF--AVDGRAELTQADYEVAEYLRRKGKPVILVAT 116 Query: 328 KSD-------LYSTYTEEYDHLI--SSFTGEGLEELINKI 358 K D L Y + I SS GLEEL+ I Sbjct: 117 KVDDPKHELYLGPLYGLGFGDPIPTSSEHARGLEELLEAI 156 >gi|15674498|ref|NP_268672.1| GTP-binding protein EngA [Streptococcus pyogenes M1 GAS] gi|19745453|ref|NP_606589.1| GTP-binding protein EngA [Streptococcus pyogenes MGAS8232] gi|50913661|ref|YP_059633.1| GTP-binding protein EngA [Streptococcus pyogenes MGAS10394] gi|56808746|ref|ZP_00366464.1| COG1160: Predicted GTPases [Streptococcus pyogenes M49 591] gi|71910101|ref|YP_281651.1| GTP-binding protein EngA [Streptococcus pyogenes MGAS5005] gi|94987918|ref|YP_596019.1| GTP-binding protein EngA [Streptococcus pyogenes MGAS9429] gi|94991802|ref|YP_599901.1| GTP-binding protein EngA [Streptococcus pyogenes MGAS2096] gi|209558845|ref|YP_002285317.1| GTP-binding protein EngA [Streptococcus pyogenes NZ131] gi|54037054|sp|P64065|DER_STRP8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|54040977|sp|P64064|DER_STRP1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|68052093|sp|Q5XDR3|DER_STRP6 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|166225861|sp|Q1JDF1|DER_STRPB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|166225862|sp|Q1JNC4|DER_STRPC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|238058978|sp|B5XJW0|DER_STRPZ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|13621599|gb|AAK33393.1| putative phosphoglycerate dehydrogenase [Streptococcus pyogenes M1 GAS] gi|19747567|gb|AAL97088.1| putative phosphoglycerate dehydrogenase [Streptococcus pyogenes MGAS8232] gi|50902735|gb|AAT86450.1| GTP-binding protein [Streptococcus pyogenes MGAS10394] gi|71852883|gb|AAZ50906.1| GTP-binding protein [Streptococcus pyogenes MGAS5005] gi|94541426|gb|ABF31475.1| GTP-binding protein [Streptococcus pyogenes MGAS9429] gi|94545310|gb|ABF35357.1| GTP-binding protein [Streptococcus pyogenes MGAS2096] gi|209540046|gb|ACI60622.1| GTP-binding protein EngA [Streptococcus pyogenes NZ131] Length = 436 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 71/145 (48%), Gaps = 31/145 (21%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRETDD 282 ++G N GKSSL NA+ +D I + + GTTRD + D +G + DTAG+R++ Sbjct: 179 LIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDADGQEFTMIDTAGMRKSGK 238 Query: 283 I---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY 339 I EK + R ++ +D++L++ IN+++ I EY Sbjct: 239 IYENTEKYSVMRAMRAIDRSDVVLMV--INAEEGI----------------------REY 274 Query: 340 DHLISSF---TGEGLEELINKIKSI 361 D I+ F G+G+ ++NK +I Sbjct: 275 DKRIAGFAHEAGKGMIIVVNKWDTI 299 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN +A + ++IV D+ G TRD + + + DT GI + D Sbjct: 6 VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRQFSLIDTGGIDDVD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + + +E AD+I+ + Sbjct: 66 APFMEQIKHQAQIAMEEADVIVFV 89 >gi|332686552|ref|YP_004456326.1| GTP-binding protein EngA [Melissococcus plutonius ATCC 35311] gi|332370561|dbj|BAK21517.1| GTP-binding protein EngA [Melissococcus plutonius ATCC 35311] Length = 436 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 50/87 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS++FN +A + ++IV D+PG TRD + + G I DT GI + Sbjct: 6 IAIVGRPNVGKSTIFNRIAGERISIVEDVPGVTRDRIYATGEWLGQAFSIIDTGGIDLGN 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI 308 + ++ ++ + +E AD+IL + I Sbjct: 66 EPFIEQIKQQAEIAIEEADVILFITSI 92 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 50/89 (56%), Gaps = 4/89 (4%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRE 279 K ++G N GKSSL NA+ ++ IV++I GTTRD + T G + DTAG+R+ Sbjct: 176 KFSLIGRPNVGKSSLINAILGEERVIVSEIEGTTRDAIDTYFTSPNGQKFLMIDTAGMRK 235 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLL 305 + EK + R +E +D++L++ Sbjct: 236 RGKVYENTEKYSVMRAMRAIERSDIVLMV 264 >gi|302386477|ref|YP_003822299.1| ribosome-associated GTPase EngA [Clostridium saccharolyticum WM1] gi|302197105|gb|ADL04676.1| ribosome-associated GTPase EngA [Clostridium saccharolyticum WM1] Length = 442 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/116 (34%), Positives = 62/116 (53%), Gaps = 6/116 (5%) Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247 +S+ L D+L ++++ H + E + +I I+G N GKSS+ N L ++ IV Sbjct: 149 ASRLGLGDLL---DEVAKHFDLSETEEEEDDRPRIAIVGKPNVGKSSIINQLLGENRVIV 205 Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENAD 300 ++I GTTRD + ++ EG DTAG+R I +E+ I RT VE AD Sbjct: 206 SNIAGTTRDAVDTEIVHEGTEYVFIDTAGLRRKSKIKEELERYSIIRTVTAVERAD 261 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 32/91 (35%), Positives = 53/91 (58%), Gaps = 7/91 (7%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID---LDLEGYLVKISDTAGIR 278 + I+G N GKS+LFN LA ++IV D PG TRD + D LD+ L+ DT GI Sbjct: 6 VAIVGRPNVGKSTLFNVLAGDTISIVKDTPGVTRDRIYADCTWLDMNFTLI---DTGGIE 62 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEI 308 ++ DI+ + ++ + + AD+I+ + ++ Sbjct: 63 PDSSDIILSQMREQAEIAIATADVIIFIVDV 93 >gi|256847158|ref|ZP_05552604.1| ribosome-associated GTPase EngA [Lactobacillus coleohominis 101-4-CHN] gi|256715822|gb|EEU30797.1| ribosome-associated GTPase EngA [Lactobacillus coleohominis 101-4-CHN] Length = 437 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/156 (26%), Positives = 76/156 (48%), Gaps = 21/156 (13%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN +A + ++IV D PG TRD + + G + DT GI +D Sbjct: 7 VAIVGRPNVGKSTLFNRIAGERISIVEDTPGVTRDRIYTHAEWLGKNFNLIDTGGIDMSD 66 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTK------------- 328 + + ++ + ++ AD+I+L+ ++ + + K ++ K Sbjct: 67 QPLTTQIREQAEVAIDEADVIVLVVDVQNGITDADEKVAQLLYRSNKPVVLAVNKVDNPE 126 Query: 329 --SDLYSTYT----EEYDHLISSFTGEGLEELINKI 358 SD+Y Y+ E Y +SS G GL +L++ + Sbjct: 127 RRSDIYDFYSLGLGEPYP--VSSVHGIGLGDLLDAV 160 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 49/85 (57%), Gaps = 3/85 (3%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 ++G N GKSSL NA+ + IV+DI GTTRD + + + DTAGI++ + Sbjct: 180 LIGRPNVGKSSLVNAILGQQRVIVSDIAGTTRDAINTQFVADHRKFTMVDTAGIKKKGKL 239 Query: 284 ---VEKEGIKRTFLEVENADLILLL 305 E+ + R+ ++++D++L++ Sbjct: 240 YENTERYALMRSMKAIDDSDVVLVV 264 >gi|149002004|ref|ZP_01826958.1| GTP-binding protein EngA [Streptococcus pneumoniae SP14-BS69] gi|147759813|gb|EDK66803.1| GTP-binding protein EngA [Streptococcus pneumoniae SP14-BS69] Length = 353 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 44/172 (25%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRE 279 K ++G N GKSSL NA+ +D I + + GTTRD + D +G + DTAG+R+ Sbjct: 93 KFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDTDGQEFTMIDTAGMRK 152 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336 + + EK + R ++ +D++L++ IN+++ I Sbjct: 153 SGKVYENTEKYSVMRAMRAIDRSDVVLMV--INAEEGI---------------------- 188 Query: 337 EEYDHLISSF---TGEGLEELINKIKSI-------------LSNKFKKLPFS 372 EYD I+ F G+G+ ++NK ++ + +F+ LP++ Sbjct: 189 REYDKRIAGFAHEAGKGMIIVVNKWDTLEKDNHTMKNWEEDIREQFQYLPYA 240 >gi|12045187|ref|NP_072998.1| GTP-binding protein EngA [Mycoplasma genitalium G37] gi|255660444|ref|ZP_05405853.1| GTP-binding protein EngA [Mycoplasma genitalium G37] gi|1723150|sp|P47571|DER_MYCGE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|3844909|gb|AAC71553.1| GTP-binding protein engA [Mycoplasma genitalium G37] gi|166078673|gb|ABY79291.1| GTP-binding protein engA [synthetic Mycoplasma genitalium JCVI-1.0] Length = 448 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/126 (30%), Positives = 67/126 (53%), Gaps = 10/126 (7%) Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252 L D+L +N + + + L +I + ++G N GKSSL N L K++ +V++ G Sbjct: 157 LMDLLVKQNQLLPNENNDDLAKI-----RFCVIGKPNVGKSSLINQLVKQNRVLVSNESG 211 Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEIN 309 TTRD + + L + G + DTAGI+ I +E +T L + +++ILL+ ++ Sbjct: 212 TTRDAIDVPLKVNGEKFLLIDTAGIKRKGKINMGIETASYIKTKLAIARSNVILLM--VD 269 Query: 310 SKKEIS 315 K IS Sbjct: 270 GSKPIS 275 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 20/37 (54%), Positives = 28/37 (75%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 + + I+G +N GKS+LFN L +K +AIV+D P TTRD Sbjct: 2 FTVAIIGRTNVGKSTLFNRLIQKPMAIVSDTPNTTRD 38 >gi|329766866|ref|ZP_08258394.1| GTP-binding protein engA [Gemella haemolysans M341] gi|328837591|gb|EGF87216.1| GTP-binding protein engA [Gemella haemolysans M341] Length = 435 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 3/85 (3%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 ++G N GKSSL N + ++ I +DI GTTRD + D G + DTAGIR+ + Sbjct: 179 LIGRPNVGKSSLINTILGEERVIASDIAGTTRDAIDTDFKHNGDEYVVIDTAGIRKRGKV 238 Query: 284 ---VEKEGIKRTFLEVENADLILLL 305 EK + R+ +E +D++L++ Sbjct: 239 YESCEKYSVLRSLKAIERSDVVLVV 263 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 45/84 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN + ++IV D+ G TRD + + Y + DT GI D Sbjct: 6 VAIIGRPNVGKSTIFNKIIGDRLSIVEDVAGVTRDRIYSKAEWLNYSFFMIDTGGIELED 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 +K+ + L ++ AD+I+ L Sbjct: 66 TPFQKQIRAQAELAIDEADVIIFL 89 >gi|313903264|ref|ZP_07836656.1| GTP-binding protein Era [Thermaerobacter subterraneus DSM 13965] gi|313466352|gb|EFR61874.1| GTP-binding protein Era [Thermaerobacter subterraneus DSM 13965] Length = 345 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/198 (22%), Positives = 84/198 (42%), Gaps = 23/198 (11%) Query: 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254 D+ +H + G + R+G+ + ++G N GKS+L N L + +AI++D P TT Sbjct: 31 DLPGAPGGPGAHPAPGARAQGFRSGF-VALIGRPNVGKSTLLNQLIGRKIAIMSDKPQTT 89 Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGI---KRTFLEVENADLILLLKEINSK 311 R + L+ G + DT GI + ++ + + +RT EVE ++ + Sbjct: 90 RTRILGVLNRPGAQLVFVDTPGIHKPQHLLGEHMVQIARRTLQEVEAVCWLVEAPDREPG 149 Query: 312 KEISF----------PK-----NIDFIFIGTKSDLYSTYTE----EYDHLISSFTGEGLE 352 F P+ ID + G + + + E H +S+ G G+ Sbjct: 150 PGDRFIAEQLAGLKTPRVLVVNKIDQVAPGEVPAIAARFAELGTFAAVHPVSALHGVGVA 209 Query: 353 ELINKIKSILSNKFKKLP 370 EL+ ++ +L + P Sbjct: 210 ELVGTLEGLLPEGPRFFP 227 >gi|229096095|ref|ZP_04227068.1| GTP-binding protein engA [Bacillus cereus Rock3-29] gi|229102207|ref|ZP_04232916.1| GTP-binding protein engA [Bacillus cereus Rock3-28] gi|229115051|ref|ZP_04244461.1| GTP-binding protein engA [Bacillus cereus Rock1-3] gi|228668191|gb|EEL23623.1| GTP-binding protein engA [Bacillus cereus Rock1-3] gi|228681108|gb|EEL35276.1| GTP-binding protein engA [Bacillus cereus Rock3-28] gi|228687055|gb|EEL40960.1| GTP-binding protein engA [Bacillus cereus Rock3-29] Length = 436 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 49/85 (57%), Gaps = 3/85 (3%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 ++G N GKSSL NAL ++ IV++I GTTRD + +G I DTAG+R+ + Sbjct: 180 LIGRPNVGKSSLVNALLGQERVIVSNIAGTTRDAVDTPYSKDGQDYVIIDTAGMRKKGKV 239 Query: 284 ---VEKEGIKRTFLEVENADLILLL 305 EK + R +E +D++L++ Sbjct: 240 YESTEKYSVLRALRAIERSDVVLVV 264 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS++FN + + V+IV DIPG TRD + + + I DT GI D Sbjct: 6 IAIVGRPNVGKSTIFNRIVGERVSIVEDIPGITRDRIYSAGEWLNHEFNIIDTGGIDIGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + ++ + ++ AD+I+ + Sbjct: 66 EPFLTQIRQQAEVAIDEADVIIFM 89 >gi|314933657|ref|ZP_07841022.1| ribosome-associated GTPase EngA [Staphylococcus caprae C87] gi|313653807|gb|EFS17564.1| ribosome-associated GTPase EngA [Staphylococcus caprae C87] Length = 436 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSL NA+ ++ IV+++ GTTRD + + EG + DTAG+R+ Sbjct: 177 RLSIIGRPNVGKSSLVNAILGEERVIVSNVAGTTRDAVDTEYSYEGQDYVLIDTAGMRKK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + EK + R +E ++++L++ Sbjct: 237 GKVYESTEKYSVLRALKAIERSNVVLVV 264 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 45/84 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN + + V+IV D PG TRD + + + I DT GI D Sbjct: 6 VAIVGKPNVGKSTIFNRVVGERVSIVEDTPGVTRDRIYSSGEWLTHEFNIIDTGGIEIGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + + + ++ AD+I+ + Sbjct: 66 APFQTQIRAQAEIAIDEADVIIFM 89 >gi|71902945|ref|YP_279748.1| GTP-binding protein EngA [Streptococcus pyogenes MGAS6180] gi|123640474|sp|Q48V63|DER_STRPM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|71802040|gb|AAX71393.1| GTP-binding protein [Streptococcus pyogenes MGAS6180] Length = 436 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 71/145 (48%), Gaps = 31/145 (21%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRETDD 282 ++G N GKSSL NA+ +D I + + GTTRD + D +G + DTAG+R++ Sbjct: 179 LIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDADGQEFTMIDTAGMRKSGK 238 Query: 283 I---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY 339 I EK + R ++ +D++L++ IN+++ I EY Sbjct: 239 IYENTEKYSVMRAMRAIDRSDVVLMV--INAEEGI----------------------REY 274 Query: 340 DHLISSF---TGEGLEELINKIKSI 361 D I+ F G+G+ ++NK +I Sbjct: 275 DKRIAGFAHEAGKGMIIVVNKWDTI 299 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN +A + ++IV D+ G TRD + + + DT GI + D Sbjct: 6 VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRQFSLIDTGGIDDVD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + + +E AD+I+ + Sbjct: 66 APFMEQIKHQAQIAMEEADVIVFV 89 >gi|241889489|ref|ZP_04776788.1| ribosome-associated GTPase EngA [Gemella haemolysans ATCC 10379] gi|241863796|gb|EER68179.1| ribosome-associated GTPase EngA [Gemella haemolysans ATCC 10379] Length = 435 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 3/85 (3%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 ++G N GKSSL N + ++ I +DI GTTRD + D G + DTAGIR+ + Sbjct: 179 LIGRPNVGKSSLINTILGEERVIASDIAGTTRDAIDTDFKHNGDEYVVIDTAGIRKRGKV 238 Query: 284 ---VEKEGIKRTFLEVENADLILLL 305 EK + R+ +E +D++L++ Sbjct: 239 YESCEKYSVLRSLKAIERSDVVLVV 263 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 45/84 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN + ++IV D+ G TRD + + Y + DT GI D Sbjct: 6 VAIIGRPNVGKSTIFNKIIGDRLSIVEDVAGVTRDRIYSKAEWLNYSFFMIDTGGIELED 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 +K+ + L ++ AD+I+ L Sbjct: 66 TPFQKQIRAQAELAIDEADVIIFL 89 >gi|227893492|ref|ZP_04011297.1| GTP-binding protein EngA [Lactobacillus ultunensis DSM 16047] gi|227864717|gb|EEJ72138.1| GTP-binding protein EngA [Lactobacillus ultunensis DSM 16047] Length = 435 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/179 (25%), Positives = 82/179 (45%), Gaps = 29/179 (16%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 ++G N GKSS+ N L +D IV + GTTRD + G K+ DTAGIR + Sbjct: 179 VIGRPNVGKSSIVNKLLGEDRVIVANEEGTTRDAVDTPFTKNGVKYKVVDTAGIRRRGKV 238 Query: 284 VEKE---GIKRTFLEVENADLILLLKEINS-----KKEI---SFPKNIDFIFIGTKSDLY 332 EK + R +E +D++LL+ + ++ K + + I + K DL Sbjct: 239 YEKTEKYSVLRAMSAIERSDVVLLVLDASTGIREQDKHVAGYAHEAGRGIIIVVNKWDLL 298 Query: 333 ---STYTEEYDH---------------LISSFTGEGLEELINKIKSILSNKFKKLPFSI 373 ST +E++ +S+ TG+ L+++ +K + N+ +++ S+ Sbjct: 299 KKNSTSAKEFEREIRAEFQYLDYAPILFVSAKTGQRLDQIPTLVKEVYDNQNQRIQSSV 357 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 48/87 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN + + +AIV D PG TRD + G+ + DT GI Sbjct: 6 VAIVGRPNVGKSTLFNRIINQRLAIVEDKPGVTRDRNYAQAEWMGHKFDLIDTGGITWEG 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI 308 +E+E + + +E AD+I++L + Sbjct: 66 GKIEEEIRAQAEIAIEEADVIVMLTSV 92 >gi|300871622|ref|YP_003786495.1| GTP-binding protein [Brachyspira pilosicoli 95/1000] gi|300689323|gb|ADK31994.1| GTP-binding protein [Brachyspira pilosicoli 95/1000] Length = 404 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/94 (42%), Positives = 56/94 (59%), Gaps = 4/94 (4%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTA 275 N I I G N GKSS+ NA+A +DVAIV+D GTT D + I+++ G I DTA Sbjct: 20 NRTHIAIFGRRNVGKSSIINAIANQDVAIVSDTAGTTTDPVKKAIEINKIGACT-IVDTA 78 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309 G + ++ E IKRT +E+AD+ LL+ + N Sbjct: 79 GFDDEGELGELR-IKRTKKIMESADIALLVFDAN 111 >gi|260892064|ref|YP_003238161.1| GTP-binding protein Era [Ammonifex degensii KC4] gi|260864205|gb|ACX51311.1| GTP-binding protein Era [Ammonifex degensii KC4] Length = 300 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/193 (25%), Positives = 84/193 (43%), Gaps = 22/193 (11%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R+G+ + ++G N GKS+L N L + VAIV+D P TTR + L L + DT G Sbjct: 7 RSGF-VSVVGRPNVGKSTLINHLVGQKVAIVSDKPQTTRHRILGVLTLPEAQIVFVDTPG 65 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK------------KEISFP-----KN 319 I + + + + ++ DL+L L E S K+ P Sbjct: 66 IHKPRHRLGEYLVTLALGALKGVDLVLFLSEATSPPGAGDYFILEQLKKAEVPVILVLNK 125 Query: 320 IDFIFIGTKSDLYSTYTEEYDHL----ISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375 ID I L + +E+D +S+ TGE LE L+ +I L + P + + Sbjct: 126 IDLISKPRLLPLIDLWRQEHDFAAIVPVSALTGENLERLVQEIVEHLPPGPQYFPPEVTT 185 Query: 376 HKRHLYHLSQTVR 388 + + +++ +R Sbjct: 186 SQPPEFVVAELIR 198 >gi|229543990|ref|ZP_04433049.1| small GTP-binding protein [Bacillus coagulans 36D1] gi|229325129|gb|EEN90805.1| small GTP-binding protein [Bacillus coagulans 36D1] Length = 436 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K +G N GKSSLFNA+ ++ IV+DI GTTRD + E + DTAG+R+ Sbjct: 177 KFCFIGRPNVGKSSLFNAILGEERVIVSDIEGTTRDAVDTVYTYEDQTYVMIDTAGMRKK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + EK + R +E +D++ ++ Sbjct: 237 GKVYENTEKYSVLRALRAIERSDVVCVV 264 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN + + V+IV D+PG TRD + + + + DT GI D Sbjct: 6 VAIVGRPNVGKSTIFNRIVGERVSIVEDVPGVTRDRIYSPAEWLTHEFNVIDTGGIDIGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + ++ ++ + ++ AD+I+ + Sbjct: 66 EPFLEQIRQQAEIAIQEADVIIFI 89 >gi|157827640|ref|YP_001496704.1| GTP-binding protein EngA [Rickettsia bellii OSU 85-389] gi|166225850|sp|A8GXR7|DER_RICB8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|157802944|gb|ABV79667.1| GTP-binding protein EngA [Rickettsia bellii OSU 85-389] Length = 452 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/82 (36%), Positives = 44/82 (53%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 ++G N GKS+LFN L+ + AIV D+PG TRD D + + + DT G E D Sbjct: 13 LVGRPNVGKSTLFNRLSMRKKAIVHDLPGVTRDRKYTDGRIGSFEFSLIDTPGFEENPDS 72 Query: 284 VEKEGIKRTFLEVENADLILLL 305 K +++T + ADLI + Sbjct: 73 FGKRLMEQTTKAINEADLICFM 94 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 37/65 (56%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +IV+ G NAGKS+ NAL + + G TR+ + ID +G +K+ DTAG+R+ Sbjct: 186 QIVVSGRPNAGKSTFINALINDERLLTGPEAGITRESIEIDWQYKGNHIKLIDTAGLRKK 245 Query: 281 DDIVE 285 I E Sbjct: 246 ATITE 250 >gi|28378534|ref|NP_785426.1| GTP-binding protein EngA [Lactobacillus plantarum WCFS1] gi|254556748|ref|YP_003063165.1| GTP-binding protein EngA [Lactobacillus plantarum JDM1] gi|300767479|ref|ZP_07077391.1| ribosome-associated GTPase EngA [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308180691|ref|YP_003924819.1| GTP-binding protein EngA [Lactobacillus plantarum subsp. plantarum ST-III] gi|37999659|sp|Q88VZ6|DER_LACPL RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|28271370|emb|CAD64275.1| GTP-binding protein [Lactobacillus plantarum WCFS1] gi|254045675|gb|ACT62468.1| GTP-binding protein EngA [Lactobacillus plantarum JDM1] gi|300495298|gb|EFK30454.1| ribosome-associated GTPase EngA [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308046182|gb|ADN98725.1| GTP-binding protein EngA [Lactobacillus plantarum subsp. plantarum ST-III] Length = 436 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/86 (36%), Positives = 49/86 (56%), Gaps = 4/86 (4%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRETDD 282 ++G N GKSS+ NAL +D IV+D+ GTTRD + D +G + DTAGIR+ Sbjct: 179 LIGRPNVGKSSIVNALLGEDRVIVSDVAGTTRDAIDTKFTDQDGDRFVMVDTAGIRKKGK 238 Query: 283 I---VEKEGIKRTFLEVENADLILLL 305 + E+ + R ++N+D+ L + Sbjct: 239 VYENTERYSVMRALKAIDNSDVALFV 264 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 48/87 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN +A ++IV D PG TRD + + + G + DT GI D Sbjct: 6 VAIVGRPNVGKSTIFNRIAGDRISIVEDTPGVTRDRIYANSEWLGQEFSLIDTGGIDIED 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI 308 K+ ++ + ++ AD+I+ L I Sbjct: 66 APFIKQITQQAEIAIDEADVIIYLVSI 92 >gi|99080832|ref|YP_612986.1| GTP-binding protein EngA [Ruegeria sp. TM1040] gi|123077693|sp|Q1GHZ2|DER_SILST RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|99037112|gb|ABF63724.1| Small GTP-binding protein domain [Ruegeria sp. TM1040] Length = 492 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 52/168 (30%), Positives = 80/168 (47%), Gaps = 19/168 (11%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 + + I+G N GKS+LFN L K +A+V D PG TRD+ + L + D+AG+ + Sbjct: 3 FTLAIVGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDLREGEARLGDLRFTVIDSAGLED 62 Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330 TD+ +E + T VE AD+ L L + + EI K+ I KS+ Sbjct: 63 ATDNSLEGRMRRLTERAVEMADVCLFLIDARAGVTPTDEVFAEILRKKSAHVILAANKSE 122 Query: 331 LYST---YTEEYDH------LISSFTGEGLEELINKIKSILSNKFKKL 369 + E Y +S GEGL +L +++ + S KF+KL Sbjct: 123 GSAADAGVLEAYGLGLGEPIRMSGEHGEGLNDLYSELLPV-SEKFEKL 169 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 40/66 (60%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ ++G NAGKS+L N + +D + G TRD +++ +D G ++I DTAG+R+ Sbjct: 208 QVAVVGRPNAGKSTLINKILGEDRLLTGPEAGITRDAISLKIDWSGTPMRIFDTAGMRKK 267 Query: 281 DDIVEK 286 + EK Sbjct: 268 AKVQEK 273 >gi|170017042|ref|YP_001727961.1| GTP-binding protein engA [Leuconostoc citreum KM20] gi|238688961|sp|B1MYB5|DER_LEUCK RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|169803899|gb|ACA82517.1| GTP-binding protein engA [Leuconostoc citreum KM20] Length = 437 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN +A + +AIV D PG TRD L + Y ++ DT GI D Sbjct: 6 VAIVGRPNVGKSTIFNRMAGERIAIVEDKPGVTRDRLYAPAEWLNYEFRMIDTGGIELGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + E + L ++ AD+I+++ Sbjct: 66 EPFLAEIRAQVELAIDEADVIVMV 89 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 32/86 (37%), Positives = 51/86 (59%), Gaps = 4/86 (4%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID-LDLEGYLVKISDTAGIRETDD 282 I+G N GKSS+ NA+ +D IV+DI GTTRD + + EG + DTAG+R+ Sbjct: 180 IIGRPNVGKSSIVNAMLGEDRVIVSDIEGTTRDAIDSRFVTAEGDEFIMVDTAGMRKRGK 239 Query: 283 I---VEKEGIKRTFLEVENADLILLL 305 + EK + R ++N+++IL++ Sbjct: 240 VYENTEKYSVMRALKAIDNSNVILMV 265 >gi|51891490|ref|YP_074181.1| putative GTPase [Symbiobacterium thermophilum IAM 14863] gi|51855179|dbj|BAD39337.1| putative GTPase [Symbiobacterium thermophilum IAM 14863] Length = 413 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/85 (40%), Positives = 54/85 (63%), Gaps = 4/85 (4%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDTAGIRE 279 I G NAGKSSL NAL+++ V++V+ +PGTT D + ++L G +V I DTAGI + Sbjct: 14 IAFFGRRNAGKSSLINALSRQAVSLVSPVPGTTTDPVRRPMELHPLGPVVLI-DTAGIDD 72 Query: 280 TDDIVEKEGIKRTFLEVENADLILL 304 D+ + ++R+F ++ DL +L Sbjct: 73 EGDL-GRLRVERSFQVLDQTDLAVL 96 >gi|83954198|ref|ZP_00962918.1| GTP-binding protein EngA [Sulfitobacter sp. NAS-14.1] gi|83841235|gb|EAP80405.1| GTP-binding protein EngA [Sulfitobacter sp. NAS-14.1] Length = 491 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 1/87 (1%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 + + I+G N GKS+LFN L K +A+V D PG TRD+ L + DTAG+ E Sbjct: 3 FTLAIVGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDLREGAARLADLRFTVVDTAGLEE 62 Query: 280 -TDDIVEKEGIKRTFLEVENADLILLL 305 TDD ++ + T V+ AD+ L + Sbjct: 63 VTDDSLQGRMRRLTERAVDMADICLFM 89 Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 38/66 (57%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ ++G NAGKS+L N + +D + G TRD +++ D ++I DTAG+R+ Sbjct: 205 QVAVVGRPNAGKSTLINQIMGEDRLLTGPEAGITRDAISLQTDWFDVPMRIFDTAGMRKR 264 Query: 281 DDIVEK 286 + EK Sbjct: 265 AKVQEK 270 >gi|83943023|ref|ZP_00955483.1| GTP-binding protein EngA [Sulfitobacter sp. EE-36] gi|83846031|gb|EAP83908.1| GTP-binding protein EngA [Sulfitobacter sp. EE-36] Length = 491 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 1/87 (1%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 + + I+G N GKS+LFN L K +A+V D PG TRD+ L + DTAG+ E Sbjct: 3 FTLAIVGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDLREGAARLADLRFTVVDTAGLEE 62 Query: 280 -TDDIVEKEGIKRTFLEVENADLILLL 305 TDD ++ + T V+ AD+ L + Sbjct: 63 VTDDSLQGRMRRLTERAVDMADICLFM 89 Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 38/66 (57%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ ++G NAGKS+L N + +D + G TRD +++ D ++I DTAG+R+ Sbjct: 205 QVAVVGRPNAGKSTLINQIMGEDRLLTGPEAGITRDAISLQTDWFDVPMRIFDTAGMRKR 264 Query: 281 DDIVEK 286 + EK Sbjct: 265 AKVQEK 270 >gi|332523593|ref|ZP_08399845.1| ribosome biogenesis GTPase Der [Streptococcus porcinus str. Jelinkova 176] gi|332314857|gb|EGJ27842.1| ribosome biogenesis GTPase Der [Streptococcus porcinus str. Jelinkova 176] Length = 436 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 73/151 (48%), Gaps = 31/151 (20%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAG 276 N + ++G N GKSSL NA+ +D I + + GTTRD + D +G + DTAG Sbjct: 173 NIIRFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTSFTDSDGQEFTMIDTAG 232 Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYS 333 +R++ I EK + R ++ +D++L++ IN+++ I Sbjct: 233 MRKSGKIYENTEKYSVMRAMRAIDRSDVVLMV--INAEEGI------------------- 271 Query: 334 TYTEEYDHLISSF---TGEGLEELINKIKSI 361 EYD I+ F G+G+ ++NK +I Sbjct: 272 ---REYDKRIAGFAHEAGKGMIIVVNKWDTI 299 Score = 43.5 bits (101), Expect = 0.066, Method: Compositional matrix adjust. Identities = 24/84 (28%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN +A + ++IV D+ G TRD + + + DT GI + + Sbjct: 6 VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTTGEWLNRKFSLIDTGGIDDVN 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + + ++ AD+I+ + Sbjct: 66 APFMEQIKHQAQIAMDEADVIVFV 89 >gi|331265908|ref|YP_004325538.1| phosphoglycerate dehydrogenase, GTP-binding protein [Streptococcus oralis Uo5] gi|326682580|emb|CBZ00197.1| phosphoglycerate dehydrogenase, GTP-binding protein [Streptococcus oralis Uo5] Length = 436 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/179 (25%), Positives = 82/179 (45%), Gaps = 33/179 (18%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRE 279 K ++G N GKSSL NA+ +D I + + GTTRD + D +G + DTAG+R+ Sbjct: 176 KFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDTDGQEFTMIDTAGMRK 235 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336 + + EK + R ++ +D++L++ +N+++ I Sbjct: 236 SGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEGI---------------------- 271 Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL 395 EYD I+ F E + +I I+ NK+ L + K+ + + +YL A + Sbjct: 272 REYDKRIAGFAHEAGKGMI-----IVVNKWDTLEKDNHTMKKWEEDIREQFQYLPYAPI 325 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN +A + ++IV D+ G TRD + + + DT GI + D Sbjct: 6 VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRSFSMIDTGGIDDVD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + + +E AD+I+ + Sbjct: 66 APFMEQIKHQAEIAMEEADVIVFV 89 >gi|255656611|ref|ZP_05402020.1| GTP-binding protein EngA [Clostridium difficile QCD-23m63] gi|296449935|ref|ZP_06891699.1| ribosome-associated GTPase EngA [Clostridium difficile NAP08] gi|296878317|ref|ZP_06902325.1| ribosome-associated GTPase EngA [Clostridium difficile NAP07] gi|296261205|gb|EFH08036.1| ribosome-associated GTPase EngA [Clostridium difficile NAP08] gi|296430615|gb|EFH16454.1| ribosome-associated GTPase EngA [Clostridium difficile NAP07] Length = 441 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I G NAGKSS+ N + ++ IV+ I GTTRD + + G + DTAG+R Sbjct: 180 RVAITGKPNAGKSSILNKILGEERVIVSPIAGTTRDAIDTYFEKNGQKFLLIDTAGLRRK 239 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 I +EK + R V+ AD++L++ Sbjct: 240 SKIYETIEKYSVIRAMSAVDRADVVLIV 267 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 49/85 (57%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + ++G N GKS++FN A K ++IV + PG TRD + +++ + DT GI ++ Sbjct: 8 VAVVGRPNVGKSTIFNKFAGKRISIVENTPGVTRDRIFAEVEWLDKYFTLVDTGGIEPDS 67 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 +DI+ + + L ++ + +IL + Sbjct: 68 EDIILSQMRNQAMLAMDMSHVILFI 92 >gi|317495375|ref|ZP_07953744.1| ribosome-associated GTPase EngA [Gemella moribillum M424] gi|316914434|gb|EFV35911.1| ribosome-associated GTPase EngA [Gemella moribillum M424] Length = 435 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 3/85 (3%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 ++G N GKSSL N + ++ I +DI GTTRD + D G + DTAGIR+ + Sbjct: 179 LIGRPNVGKSSLINTILGEERVIASDIAGTTRDAIDTDFKHNGDEYVVIDTAGIRKRGKV 238 Query: 284 ---VEKEGIKRTFLEVENADLILLL 305 EK + R+ +E +D++L++ Sbjct: 239 YEACEKYSVLRSLKAIERSDVVLVV 263 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 45/84 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN + ++IV D+ G TRD + + Y + DT GI D Sbjct: 6 VAIIGRPNVGKSTIFNKIIGDRLSIVEDVAGVTRDRIYSKAEWLNYSFFMIDTGGIELED 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 +K+ + L ++ AD+I+ L Sbjct: 66 TPFQKQIRAQAELAIDEADVIIFL 89 >gi|254385852|ref|ZP_05001171.1| GTP-binding protein engA [Streptomyces sp. Mg1] gi|194344716|gb|EDX25682.1| GTP-binding protein engA [Streptomyces sp. Mg1] Length = 486 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 39/59 (66%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 +I ++G N GKSSL N +AK+D +V ++ GTTRD + ++L G K DTAGIR+ Sbjct: 222 RIALIGRPNVGKSSLLNKVAKEDRVVVNELAGTTRDPVDELIELGGVTWKFVDTAGIRK 280 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/84 (28%), Positives = 43/84 (51%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+L N + + A+V D PG TRD +T + + G K+ DT G + Sbjct: 47 LAVVGRPNVGKSTLVNRIIGRREAVVEDKPGVTRDRVTYEAEWAGRRFKVVDTGGWEQDV 106 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + +E AD ++ + Sbjct: 107 LGIDASVAAQAEYAIEAADAVVFV 130 >gi|293365923|ref|ZP_06612626.1| ribosome-associated GTPase EngA [Streptococcus oralis ATCC 35037] gi|307702327|ref|ZP_07639285.1| small GTP-binding domain protein [Streptococcus oralis ATCC 35037] gi|315613624|ref|ZP_07888531.1| ribosome-associated GTPase EngA [Streptococcus sanguinis ATCC 49296] gi|291315601|gb|EFE56051.1| ribosome-associated GTPase EngA [Streptococcus oralis ATCC 35037] gi|307624130|gb|EFO03109.1| small GTP-binding domain protein [Streptococcus oralis ATCC 35037] gi|315314315|gb|EFU62360.1| ribosome-associated GTPase EngA [Streptococcus sanguinis ATCC 49296] Length = 436 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/179 (25%), Positives = 82/179 (45%), Gaps = 33/179 (18%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRE 279 K ++G N GKSSL NA+ +D I + + GTTRD + D +G + DTAG+R+ Sbjct: 176 KFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDTDGQEFTMIDTAGMRK 235 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336 + + EK + R ++ +D++L++ +N+++ I Sbjct: 236 SGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEGI---------------------- 271 Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL 395 EYD I+ F E + +I I+ NK+ L + K+ + + +YL A + Sbjct: 272 REYDKRIAGFAHEAGKGMI-----IVVNKWDTLEKDNHTMKKWEEDIREQFQYLPYAPI 325 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS+LFN +A + ++IV D+ G TRD + + + DT GI + D Sbjct: 6 IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRSFSMIDTGGIDDVD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + + +E AD+I+ + Sbjct: 66 APFMEQIKHQAEIAMEEADVIVFV 89 >gi|300361577|ref|ZP_07057754.1| ribosome-associated GTPase EngA [Lactobacillus gasseri JV-V03] gi|300354196|gb|EFJ70067.1| ribosome-associated GTPase EngA [Lactobacillus gasseri JV-V03] Length = 435 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 3/85 (3%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 ++G N GKSSL NA+ + IV++I GTTRD + +G I DTAGIR + Sbjct: 179 VIGRPNVGKSSLVNAILGEQRVIVSNIEGTTRDAIDTTFTNDGQKYTIVDTAGIRRRGKV 238 Query: 284 ---VEKEGIKRTFLEVENADLILLL 305 EK + R +E +D+ LL+ Sbjct: 239 YEKTEKYSVLRAISAIEESDITLLV 263 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 48/89 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS++FN + VAIV D G TRD + + G+ + DT GI Sbjct: 6 VALVGRPNVGKSTIFNRIINSRVAIVEDKAGVTRDRIYARAEWMGHEFILIDTGGITLDS 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310 +E++ + + ++ AD+I++L ++ Sbjct: 66 GEIEEQIKAQAEIAIDEADVIVMLGDVTQ 94 >gi|332652574|ref|ZP_08418319.1| GTP-binding protein Era [Ruminococcaceae bacterium D16] gi|332517720|gb|EGJ47323.1| GTP-binding protein Era [Ruminococcaceae bacterium D16] Length = 298 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 54/197 (27%), Positives = 90/197 (45%), Gaps = 23/197 (11%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273 EI ++G I + G N GKS+L NAL + VAIVT+ P TTR+ +T L+ D Sbjct: 2 EIKKSGI-ITLCGRPNVGKSTLTNALVGEKVAIVTNKPQTTRNRITAILNRGESQFVFVD 60 Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------------INSKKEISFPKNID 321 T G+ + + + V + D I+LL E I+ K + P + Sbjct: 61 TPGLHKARTRLGDYMVNVVKESVADVDGIMLLVEPIPNIGAPEQQLIDRIKTLGCPSVLV 120 Query: 322 FIFIGTKS------DLYSTYTEEYDHL----ISSFTGEGLEELINKIKSILSNKFKKLPF 371 + T ++ YT+ +D IS+ TGEG++EL+N ++ L N + P Sbjct: 121 INKVDTLEQKEKLLEVIQVYTQAHDFTAVVPISAKTGEGVDELLNVLEGFLPNGPQLFPE 180 Query: 372 SIPSHKRHLYHLSQTVR 388 + S + +++ +R Sbjct: 181 GMVSDQPERQMMAEILR 197 >gi|302533632|ref|ZP_07285974.1| LOW QUALITY PROTEIN: ribosome-associated GTPase EngA [Streptomyces sp. C] gi|302442527|gb|EFL14343.1| LOW QUALITY PROTEIN: ribosome-associated GTPase EngA [Streptomyces sp. C] Length = 496 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/67 (41%), Positives = 41/67 (61%) Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272 G I +I ++G N GKSSL N +A++D +V ++ GTTRD + ++L G K Sbjct: 214 GAAIGGPRRIALIGRPNVGKSSLLNKVAREDRVVVNELAGTTRDPVDELIELGGVTWKFV 273 Query: 273 DTAGIRE 279 DTAGIR+ Sbjct: 274 DTAGIRK 280 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/84 (28%), Positives = 43/84 (51%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+L N + + A+V D PG TRD +T + + G K+ DT G + Sbjct: 47 LAVVGRPNVGKSTLVNRIIGRREAVVEDKPGVTRDRVTYEAEWAGRRFKVVDTGGWEQDV 106 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + +E AD ++ + Sbjct: 107 LGIDASVAAQAEYAIETADAVVFV 130 >gi|83594414|ref|YP_428166.1| GTP-binding protein EngA [Rhodospirillum rubrum ATCC 11170] gi|83577328|gb|ABC23879.1| Small GTP-binding protein domain [Rhodospirillum rubrum ATCC 11170] Length = 500 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 62/113 (54%), Gaps = 4/113 (3%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 + + I+G N GKS+LFN L + +AIV D+PG TRD L + ++ DTAG+ E Sbjct: 2 FTVAIIGRPNVGKSTLFNRLCGRRLAIVHDMPGVTRDRREGKASLADLVFRVVDTAGLEE 61 Query: 280 T-DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDL 331 +++E ++T + A + L+L I+S+ ++ P + F I K+ + Sbjct: 62 AGPEVLEGRMRQQTDRALSEAHVALML--IDSRAGVT-PLDAHFAEILRKAPI 111 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 3/92 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 ++ I+G N GKS+L N L D + G TRD + +D + G ++ DTAG+R Sbjct: 234 QMAIIGRPNTGKSTLINRLIGDDRLVTGPEAGVTRDAIEVDWEWGGRRFRLVDTAGLRRK 293 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEIN 309 ++ +EK + T + A++ +L+ + N Sbjct: 294 ARVENSLEKLMVADTLNAIRLAEVCVLMLDAN 325 >gi|311087969|gb|ADP68048.1| GTP-binding protein EngA [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 441 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 53/166 (31%), Positives = 80/166 (48%), Gaps = 19/166 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRET 280 IV++G +N GKS+LFN L K A+V + PG TRD L+ + + DTAG+ Sbjct: 5 IVLIGRTNVGKSTLFNVLTKTRDALVANYPGITRDRQYGYCKLQSNKKIILIDTAGLDIK 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL---------------KEIN--SKKEISFPKNIDFI 323 + +EK+ +T + ++ A LIL L K I KK I ID I Sbjct: 65 LNEIEKQAQAQTLIAIKEAHLILFLVNARDGLMPQEYEISKNIRKYQKKTILVINKIDGI 124 Query: 324 FIGTKSDLYSTYTEEYDHLISSFTGEGLEELINK-IKSILSNKFKK 368 +K + + + E IS+ +G+ LIN+ + +S KFKK Sbjct: 125 NEASKINEFYSLGFEKIQKISASHNQGINTLINRYLIPWISEKFKK 170 Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 7/90 (7%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT--IDLDLEGYLVKISDTAGIR 278 K+ +G N GKS+L N + K++ I ++ PGTT D ++ I + E Y + DTAG Sbjct: 188 KVAFIGRPNVGKSTLINGILKEERMITSNTPGTTLDSISTPIKYNYENYT--LIDTAGAS 245 Query: 279 ETDDIV---EKEGIKRTFLEVENADLILLL 305 + + ++ I +T +E +++ILL+ Sbjct: 246 KKKKKINDFQRFSIIKTLQTIEKSNVILLI 275 >gi|306824736|ref|ZP_07458080.1| ribosome-associated GTPase EngA [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432947|gb|EFM35919.1| ribosome-associated GTPase EngA [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 436 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/179 (25%), Positives = 82/179 (45%), Gaps = 33/179 (18%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRE 279 K ++G N GKSSL NA+ +D I + + GTTRD + D +G + DTAG+R+ Sbjct: 176 KFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDTDGQEFTMIDTAGMRK 235 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336 + + EK + R ++ +D++L++ +N+++ I Sbjct: 236 SGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEGI---------------------- 271 Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL 395 EYD I+ F E + +I I+ NK+ L + K+ + + +YL A + Sbjct: 272 REYDKRIAGFAHEAGKGMI-----IVVNKWDTLEKDNHTMKKWEEDIREQFQYLPYAPI 325 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS+LFN +A + ++IV D+ G TRD + + + DT GI + D Sbjct: 6 IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRSFSMIDTGGIDDVD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + + +E AD+I+ + Sbjct: 66 APFMEQIKHQAEIAMEEADVIVFV 89 >gi|297584434|ref|YP_003700214.1| ribosome-associated GTPase EngA [Bacillus selenitireducens MLS10] gi|297142891|gb|ADH99648.1| ribosome-associated GTPase EngA [Bacillus selenitireducens MLS10] Length = 446 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ ++G N GKSS+ NA+ ++ IV+DI GTTRD + +G + DTAG+R+ Sbjct: 185 RMSLIGRPNVGKSSMVNAILGEERVIVSDIAGTTRDAIDTSFTKDGKDYVVIDTAGMRKR 244 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + EK + R +E +D++L++ Sbjct: 245 GKVYETTEKYSVLRALKAIERSDVVLVV 272 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN + + ++IV D PG TRD + + + I DT GI +D Sbjct: 14 LAIVGRPNVGKSTLFNRVVGERISIVEDKPGVTRDRIYSSAEWLTHEFFIIDTGGIEISD 73 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + ++ + L ++ AD+I + Sbjct: 74 EPLLEQMRYQAELAIDEADVICFV 97 >gi|255262204|ref|ZP_05341546.1| ribosome-associated GTPase EngA [Thalassiobium sp. R2A62] gi|255104539|gb|EET47213.1| ribosome-associated GTPase EngA [Thalassiobium sp. R2A62] Length = 495 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 1/87 (1%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 + + I+G N GKS+LFN L K +A+V D PG TRD+ + L + DTAG+ E Sbjct: 3 FTLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGEARLADLRFTVIDTAGLEE 62 Query: 280 -TDDIVEKEGIKRTFLEVENADLILLL 305 TD+ ++ K T V+ AD+ L + Sbjct: 63 ATDESLQGRMRKLTERAVDMADVCLFM 89 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 40/66 (60%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I ++G NAGKS+L N + +D + G TRD +++ + +G V+I DTAG+R+ Sbjct: 207 QIAVVGRPNAGKSTLINQILGEDRLLTGPEAGITRDAISLRTEWDGTHVRIFDTAGMRKR 266 Query: 281 DDIVEK 286 + +K Sbjct: 267 AKVQDK 272 >gi|257784575|ref|YP_003179792.1| GTP-binding proten HflX [Atopobium parvulum DSM 20469] gi|257473082|gb|ACV51201.1| GTP-binding proten HflX [Atopobium parvulum DSM 20469] Length = 437 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 89/186 (47%), Gaps = 31/186 (16%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 + + ++G++NAGKS+L N L DV + + TTR L++D EG + ++DT Sbjct: 210 FSVSLVGYTNAGKSTLLNQLTGADVYAKDELFATLDPTTR-ALSLD---EGRKIVLTDTV 265 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---KEISFPKNI---------DFI 323 G + E K T +E + ADL+LL+ + K KEI+ ++I D + Sbjct: 266 GFIQKLPTNLIESFKSTLIEAQEADLLLLVADATDKNLSKEIAVVRSILKDIEADKSDQV 325 Query: 324 FIGTKSDLYSTYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374 + K DL S +E L IS+ G G+ L++KI+ I S K + IP Sbjct: 326 LVLNKVDLLS--EQELQMLKALYPDAVFISAQKGTGINGLLHKIQEIASTGDKVVSALIP 383 Query: 375 SHKRHL 380 +K L Sbjct: 384 FNKGAL 389 >gi|254492694|ref|ZP_05105865.1| putative GTPase [Methylophaga thiooxidans DMS010] gi|224462215|gb|EEF78493.1| putative GTPase [Methylophaga thiooxydans DMS010] Length = 468 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ +LG N GKS+L N L ++ + D PGTTRD + I + +G + DTAG+R Sbjct: 184 RLAVLGRPNVGKSTLINRLLGEERVVAFDEPGTTRDSIHIPFEKDGVNYTLIDTAGVRRR 243 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +EK + +T +E+A++ LL+ Sbjct: 244 SKVSEKLEKFSVLKTLQALEDANVALLV 271 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 73/161 (45%), Gaps = 19/161 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS++FN L + A+V D G TRD + + E + DT G+ + Sbjct: 5 IALVGRPNVGKSTIFNRLTRSRDALVADYAGLTRDRIYGTVREENLDFILIDTGGLTDQT 64 Query: 282 DIVEKEGIKRTFLEVENADLILLLKE-----INSKKEI-----SFPKNIDFIFIGTK--- 328 D + K+ L ++ ADL+L + + + S ++ S K + + T+ Sbjct: 65 DNMSDLMRKQAKLAIDEADLVLFIVDGRAGLMPSDTDVAQQLRSDGKPVRLVINKTEGEQ 124 Query: 329 -----SDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364 +D YS E +IS+ G G EL+ +IK L Sbjct: 125 REMVAADFYSLGLGE-PQVISATQGRGFTELLEEIKVCLPQ 164 >gi|42519017|ref|NP_964947.1| GTP-binding protein EngA [Lactobacillus johnsonii NCC 533] gi|227889871|ref|ZP_04007676.1| GTP-binding protein EngA [Lactobacillus johnsonii ATCC 33200] gi|268319593|ref|YP_003293249.1| GTP-binding protein engA [Lactobacillus johnsonii FI9785] gi|81832245|sp|Q74JL6|DER_LACJO RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|41583304|gb|AAS08913.1| probable GTP-binding protein EngA [Lactobacillus johnsonii NCC 533] gi|227849735|gb|EEJ59821.1| GTP-binding protein EngA [Lactobacillus johnsonii ATCC 33200] gi|262397968|emb|CAX66982.1| GTP-binding protein engA [Lactobacillus johnsonii FI9785] Length = 435 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 3/85 (3%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 ++G N GKSSL NA+ + IV++I GTTRD + +G I DTAGIR + Sbjct: 179 VIGRPNVGKSSLVNAILGEQRVIVSNIEGTTRDAIDTTFTNDGQKYTIVDTAGIRRRGKV 238 Query: 284 ---VEKEGIKRTFLEVENADLILLL 305 EK + R +E +D+ LL+ Sbjct: 239 YEKTEKYSVLRAISAIEESDITLLV 263 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 48/89 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS++FN + VAIV D G TRD + + G+ + DT GI Sbjct: 6 VALVGRPNVGKSTIFNRIINSRVAIVEDKAGVTRDRIYARAEWMGHEFILIDTGGITLDS 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310 +E++ + + ++ AD+I++L ++ Sbjct: 66 GEIEEQIKAQAEIAIDEADVIVMLGDVTQ 94 >gi|126700246|ref|YP_001089143.1| GTP-binding protein EngA [Clostridium difficile 630] gi|254976225|ref|ZP_05272697.1| GTP-binding protein EngA [Clostridium difficile QCD-66c26] gi|255093612|ref|ZP_05323090.1| GTP-binding protein EngA [Clostridium difficile CIP 107932] gi|255101800|ref|ZP_05330777.1| GTP-binding protein EngA [Clostridium difficile QCD-63q42] gi|255307668|ref|ZP_05351839.1| GTP-binding protein EngA [Clostridium difficile ATCC 43255] gi|255315360|ref|ZP_05356943.1| GTP-binding protein EngA [Clostridium difficile QCD-76w55] gi|255518025|ref|ZP_05385701.1| GTP-binding protein EngA [Clostridium difficile QCD-97b34] gi|255651141|ref|ZP_05398043.1| GTP-binding protein EngA [Clostridium difficile QCD-37x79] gi|260684207|ref|YP_003215492.1| GTP-binding protein EngA [Clostridium difficile CD196] gi|260687866|ref|YP_003219000.1| GTP-binding protein EngA [Clostridium difficile R20291] gi|306520992|ref|ZP_07407339.1| GTP-binding protein EngA [Clostridium difficile QCD-32g58] gi|115251683|emb|CAJ69518.1| putative GTP-binding protein EngA [Clostridium difficile] gi|260210370|emb|CBA64741.1| putative GTP-binding protein [Clostridium difficile CD196] gi|260213883|emb|CBE05907.1| putative GTP-binding protein [Clostridium difficile R20291] Length = 441 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I G NAGKSS+ N + ++ IV+ I GTTRD + + G + DTAG+R Sbjct: 180 RVAITGKPNAGKSSILNKILGEERVIVSPIAGTTRDAIDTYFEKNGQKFLLIDTAGLRRK 239 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 I +EK + R V+ AD++L++ Sbjct: 240 SKIYETIEKYSVIRAMSAVDRADVVLIV 267 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 49/85 (57%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + ++G N GKS++FN A K ++IV + PG TRD + +++ + DT GI ++ Sbjct: 8 VAVVGRPNVGKSTIFNKFAGKRISIVENTPGVTRDRIFAEVEWLDKYFTLVDTGGIEPDS 67 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 +DI+ + + L ++ + +IL + Sbjct: 68 EDIILSQMRNQAMLAMDMSHVILFI 92 >gi|27379163|ref|NP_770692.1| GTP-binding protein EngA [Bradyrhizobium japonicum USDA 110] gi|37999663|sp|Q89MZ0|DER_BRAJA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|27352313|dbj|BAC49317.1| GTP-binding protein [Bradyrhizobium japonicum USDA 110] Length = 460 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/213 (22%), Positives = 92/213 (43%), Gaps = 47/213 (22%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G NAGKS+L N L ++ + + GTTRD + ++++ +G ++ DTAG+R Sbjct: 189 RVAIVGRPNAGKSTLINHLLGEERLLTSPEAGTTRDSIAVEINWKGREFRVFDTAGLRRR 248 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNID--------FIFIGTKS 329 I +EK + V A++++L+ + ++ E + D + K Sbjct: 249 SRIEEKLEKLSVADALRAVRFAEVVVLMMDTQNRFEEQDLRIADLVEREGRALVLAANKW 308 Query: 330 DLYST--------YTEEYDHL-----------ISSFTGEGLEELINKIK----------- 359 DL T + DH +S GEG++ L+ I+ Sbjct: 309 DLMETKGGGAISGLRRDADHWLPQVKGVPIVAVSGLMGEGIDRLMQAIQDAYAVWNRRVS 368 Query: 360 -SILSNKFKKL-----PFSIPSHKRHLYHLSQT 386 S L+ F++ P ++ + L +++QT Sbjct: 369 TSALNRWFEQAVQANPPPAVSGRRLKLNYITQT 401 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/60 (43%), Positives = 35/60 (58%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 + I I+G N GKS+LFN L + +A+V D+PG TRD + L I DTAG+ E Sbjct: 3 FTIAIIGRPNVGKSTLFNRLVGQKLALVDDLPGVTRDRREGEARLGDLEFTIIDTAGLDE 62 >gi|315499685|ref|YP_004088488.1| ribosome-associated gtpase enga [Asticcacaulis excentricus CB 48] gi|315417697|gb|ADU14337.1| ribosome-associated GTPase EngA [Asticcacaulis excentricus CB 48] Length = 550 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 54/177 (30%), Positives = 81/177 (45%), Gaps = 41/177 (23%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-------VLTIDLDLEGYLVKISD 273 KI I+G N GKS+LFN LA K +AIV D PG TRD + IDLDL D Sbjct: 26 KIAIVGRPNVGKSTLFNRLAGKKLAIVDDQPGVTRDRRYASGHIGDIDLDL-------ID 78 Query: 274 TAGIRETDDI-VEKEGIKRTFLEVENADLILLLKEINSKKEISFP-----------KNID 321 TAG + D +E ++T +E D+ L + + +E P K+ Sbjct: 79 TAGFEDVADTSLEARMRQQTEKAIEECDVALFVMDA---REGVVPLDRIFADILRFKDKP 135 Query: 322 FIFIGTKSDLYSTYT-EEYDHL--------ISSFTGEGLEEL---INKIKSILSNKF 366 I I K++ ++ + E H+ +S+ GEG+ EL + K + ++ F Sbjct: 136 VILIANKAEGHAGFAGAEEAHVLGFGAPLHLSAEHGEGISELYEALEKYRQLIEGDF 192 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 40/66 (60%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I I+G NAGKS+L N L +D + G TRD +++D + EG +++ DTAG+R Sbjct: 208 RIAIIGRPNAGKSTLINRLLGEDRLLTGPEAGITRDSISVDWEYEGRKIRLVDTAGLRRK 267 Query: 281 DDIVEK 286 + EK Sbjct: 268 ARVQEK 273 >gi|239616804|ref|YP_002940126.1| small GTP-binding protein [Kosmotoga olearia TBF 19.5.1] gi|239505635|gb|ACR79122.1| small GTP-binding protein [Kosmotoga olearia TBF 19.5.1] Length = 409 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 4/94 (4%) Query: 215 IIRNGYK--IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKI 271 I GY+ + G N GKSSL NAL +DV+IV+D+PGTT D + L++ V + Sbjct: 2 IATGGYRKYLAFFGKRNVGKSSLINALVGQDVSIVSDVPGTTTDPVYKSLEIHPIGPVTV 61 Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 DT G+ + ++ E +KR + AD+ +L+ Sbjct: 62 VDTPGVDDVGELGELR-VKRALKAMYKADIAILV 94 >gi|42525602|ref|NP_970700.1| GTP-binding protein EngA [Treponema denticola ATCC 35405] gi|41815613|gb|AAS10581.1| GTP-binding protein EngA [Treponema denticola ATCC 35405] Length = 476 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 49/181 (27%), Positives = 84/181 (46%), Gaps = 29/181 (16%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 +I I+G N GKS+L N L +I++++ GTTRD++ + + I DTAGIR Sbjct: 210 RITIVGKPNTGKSTLANYLTGSSASIISNVAGTTRDIVEGEFSYKNKKFLIQDTAGIRRK 269 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPKN--IDFIFIGTKS 329 + ++ +E + R ++NAD++ L ++ KK I N + IF+ K Sbjct: 270 AKVNEDIEYYSVVRAIKSMDNADIVFHLIDVQEGLTEQDKKIIVQATNRGLGVIFVLNKW 329 Query: 330 DLY----STYTEEYDHL--------------ISSFTGEGLEELINKIKSILSNKFKKLPF 371 DL + +E + + IS+ G G++EL+N + KK+ Sbjct: 330 DLMEQTKKAFKDEEERIKVMFGKMDYAPVLAISANEGTGIKELLNTAVKMFEQLNKKIET 389 Query: 372 S 372 S Sbjct: 390 S 390 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 6/90 (6%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET- 280 I I+G N GKS+LFN +K +I PG TRD + + G V + DT G + T Sbjct: 33 IAIVGRPNVGKSTLFNRFLRKRRSITDPTPGVTRDPVEAQAIINGLPVMLVDTGGFKLTR 92 Query: 281 -----DDIVEKEGIKRTFLEVENADLILLL 305 +D +++ +++T ++ AD ILLL Sbjct: 93 SGDAFEDTIDELVMEKTISTLKKADRILLL 122 >gi|229004376|ref|ZP_04162143.1| GTP-binding protein engA [Bacillus mycoides Rock1-4] gi|228756874|gb|EEM06152.1| GTP-binding protein engA [Bacillus mycoides Rock1-4] Length = 368 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 3/85 (3%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 ++G N GKSSL NAL ++ IV+++ GTTRD + +G I DTAG+R+ + Sbjct: 112 LIGRPNVGKSSLVNALLGQERVIVSNVAGTTRDAVDTPYSKDGQDYVIIDTAGMRKKGKV 171 Query: 284 ---VEKEGIKRTFLEVENADLILLL 305 EK + R +E +D++L++ Sbjct: 172 YESTEKYSVLRALRAIERSDVVLVV 196 >gi|218889917|ref|YP_002438781.1| GTP-binding protein EngA [Pseudomonas aeruginosa LESB58] gi|226741143|sp|B7UWJ2|DER_PSEA8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|218770140|emb|CAW25902.1| putative GTP-binding protein EngA [Pseudomonas aeruginosa LESB58] Length = 493 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 3/92 (3%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 ++G KI I+G N GKS+L N + ++ IV D GTTRD + I + + DTAG Sbjct: 195 KDGIKIAIIGRPNVGKSTLVNRMLGEERVIVYDQAGTTRDSIYIPFERNEEKYTLIDTAG 254 Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLL 305 +R I VEK + +T +++A++++ + Sbjct: 255 VRRRGKIFEAVEKFSVVKTLQAIQDANVVIFV 286 Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 45/84 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L K AIV + G TRD + +G + DT GI + Sbjct: 5 IALVGRPNVGKSTLFNRLTKSRDAIVAEYAGLTRDRQYGEARWQGRTYIVIDTGGISGDE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + ++ + +++ +E AD +L L Sbjct: 65 EGIDAKMAEQSLQAIEEADAVLFL 88 >gi|306827971|ref|ZP_07461238.1| ribosome-associated GTPase EngA [Streptococcus pyogenes ATCC 10782] gi|304429890|gb|EFM32932.1| ribosome-associated GTPase EngA [Streptococcus pyogenes ATCC 10782] Length = 436 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 71/145 (48%), Gaps = 31/145 (21%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRETDD 282 ++G N GKSSL NA+ +D I + + GTTRD + D +G + DTAG+R++ Sbjct: 179 LIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDADGQEFTMIDTAGMRKSGK 238 Query: 283 I---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY 339 I EK + R ++ +D++L++ IN+++ I EY Sbjct: 239 IYENTEKYSVMRAIRAIDRSDVVLMV--INAEEGI----------------------REY 274 Query: 340 DHLISSF---TGEGLEELINKIKSI 361 D I+ F G+G+ ++NK +I Sbjct: 275 DKRIAGFAHEAGKGMIIVVNKWDTI 299 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN +A + ++IV D+ G TRD + + + DT GI + D Sbjct: 6 VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRQFSLIDTGGIDDVD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + + +E AD+I+ + Sbjct: 66 APFMEQIKHQAQIAMEEADVIVFV 89 >gi|108759687|ref|YP_631948.1| GTP-binding protein EngA [Myxococcus xanthus DK 1622] gi|122981004|sp|Q1D5X5|DER_MYXXD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|108463567|gb|ABF88752.1| GTP-binding protein EngA [Myxococcus xanthus DK 1622] Length = 459 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 48/194 (24%), Positives = 90/194 (46%), Gaps = 35/194 (18%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKS+L NA+ K+ + +D+ GTTRD + +L + + ++DTAGIR Sbjct: 184 RLAIIGRPNVGKSTLVNAILKEKRVVASDVAGTTRDPVDSELTYKDRKLLLTDTAGIRRK 243 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKS 329 I VE+ + +E +D+ +LL + ++ + + + K Sbjct: 244 KSIAQRVEQFSVVAALKVMERSDVAVLLMDATEPAVDQDAKLAGLAEERGRALVIVVNKW 303 Query: 330 DLYS-------TYTEEYDH-----------LISSFTGEGLEELINKIKSILSNKFKKLPF 371 DL TY E H S+ TG +E++++ + + L+++F+ F Sbjct: 304 DLVGADQRRQETYRESLKHSLKFVGYAPILFTSALTGSKVEKVVD-VATELADQFR---F 359 Query: 372 SIPSHK--RHLYHL 383 P+ + R L H+ Sbjct: 360 RAPTPQLNRLLDHM 373 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 1/90 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN L + +A+V D PG TRD D + EG DT G D Sbjct: 5 VAIVGRPNVGKSTLFNRLVGRRIALVQDEPGVTRDRHYADAEWEGRQFTFIDTGGFVPGD 64 Query: 282 -DIVEKEGIKRTFLEVENADLILLLKEINS 310 D + ++ ++ L V+ D+I+ + + + Sbjct: 65 EDQLLQQVREQAQLAVDECDVIVFVTDARA 94 >gi|329667448|gb|AEB93396.1| putative GTP-binding protein EngA [Lactobacillus johnsonii DPC 6026] Length = 435 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 3/85 (3%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 ++G N GKSSL NA+ + IV++I GTTRD + +G I DTAGIR + Sbjct: 179 VIGRPNVGKSSLVNAILGEQRVIVSNIEGTTRDAIDTTFTNDGQKYTIVDTAGIRRRGKV 238 Query: 284 ---VEKEGIKRTFLEVENADLILLL 305 EK + R +E +D+ LL+ Sbjct: 239 YEKTEKYSVLRAISAIEESDITLLV 263 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 48/89 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS++FN + VAIV D G TRD + + G+ + DT GI Sbjct: 6 VALVGRPNVGKSTIFNRIINSRVAIVEDKAGVTRDRIYARAEWMGHEFILIDTGGITLDS 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310 +E++ + + ++ AD+I++L ++ Sbjct: 66 GEIEEQIKAQAEIAIDEADVIVMLGDVTQ 94 >gi|295099666|emb|CBK88755.1| GTP-binding protein Era [Eubacterium cylindroides T2-87] Length = 300 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/86 (39%), Positives = 50/86 (58%), Gaps = 1/86 (1%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R+G+ I I+G NAGKS+L NAL K+ VAI++D P TTR+ + L LE DT G Sbjct: 4 RSGF-IAIVGRPNAGKSTLMNALLKEKVAIMSDKPNTTRNNIAGILTLEDAQYVFVDTPG 62 Query: 277 IRETDDIVEKEGIKRTFLEVENADLI 302 I + + + K + +E+ D+I Sbjct: 63 IHKPRQQLGRVLNKNAYTAMEDCDVI 88 >gi|224106171|ref|XP_002314070.1| predicted protein [Populus trichocarpa] gi|222850478|gb|EEE88025.1| predicted protein [Populus trichocarpa] Length = 489 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 7/93 (7%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID-LDLEGYLVKISDTAGIRE- 279 I I+G N GKSS+ NAL +D IV+ I GTTRD + + + +G + DTAGIR Sbjct: 218 IAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFVGPDGQKFLLIDTAGIRRR 277 Query: 280 -----TDDIVEKEGIKRTFLEVENADLILLLKE 307 + + E + R F + +D++ L+ E Sbjct: 278 AAVASSGSVTEALSVNRAFRGIRRSDVVALVIE 310 Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust. Identities = 21/38 (55%), Positives = 25/38 (65%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 K+ I+G N GKS+LFN L + AIV D PG TRD L Sbjct: 9 KVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRL 46 >gi|217976948|ref|YP_002361095.1| GTP-binding protein EngA [Methylocella silvestris BL2] gi|217502324|gb|ACK49733.1| small GTP-binding protein [Methylocella silvestris BL2] Length = 467 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 39/66 (59%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I I+G NAGKS+L N + +D + PG TRD + ID + G +K+ DTAG+R Sbjct: 197 RIAIIGRPNAGKSTLLNTIIGQDRLLTGPEPGLTRDTIGIDFEWGGRKIKMFDTAGLRRR 256 Query: 281 DDIVEK 286 + +K Sbjct: 257 AKVEDK 262 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/60 (46%), Positives = 36/60 (60%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 + I I+G N GKS+LFN L K +A+V D PG TRD + L + KI DTAG+ E Sbjct: 2 FTIAIIGRPNVGKSTLFNRLVGKRLALVDDRPGVTRDRREGEARLGDLVFKIIDTAGLEE 61 >gi|149923268|ref|ZP_01911678.1| GTP-binding protein EngA [Plesiocystis pacifica SIR-1] gi|149815865|gb|EDM75385.1| GTP-binding protein EngA [Plesiocystis pacifica SIR-1] Length = 487 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 61/240 (25%), Positives = 105/240 (43%), Gaps = 49/240 (20%) Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 I G +I +G NAGKS+L N L ++ IV+D PGTTRD + + + + ++DTA Sbjct: 199 IPPGTRIAFIGRPNAGKSTLVNTLLEEQRVIVSDTPGTTRDPVYLPFRYKDRDLVLTDTA 258 Query: 276 GIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIF 324 G+R I +EK ++ +E +++L+ + + ++F + + Sbjct: 259 GLRRRKQIARAMEKLAAIKSIRTMERTQVVVLVIDASQGVTDQDQRLARMAFERGKGVVV 318 Query: 325 IGTKSDLYS----------TYTEEY------DHLI-SSFTGEG----------LEELINK 357 K DL YT+E ++I SS GEG L EL++ Sbjct: 319 ALHKWDLIRRDGKLAKDTLAYTQEALGFLENPYIIKSSVIGEGRDEGKGRAFNLAELLDA 378 Query: 358 IKSILSNKFKKLPFS---------IPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAEN 408 S + K++P S + H +Y +++VR L A+ E + L +I+ N Sbjct: 379 CLSTAAALGKRIPTSALNEELQGAVADHSPPMYR-AKSVR-LYFATQAENEPPLIVISAN 436 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 49/175 (28%), Positives = 74/175 (42%), Gaps = 18/175 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN L + AIV D PG TRD L EG + DT G+ + Sbjct: 30 VAIIGRPNVGKSTLFNRLVGRREAIVEDRPGVTRDRLYGVASWEGRHFLVVDTGGVDPSL 89 Query: 282 DIVEKEGIK-RTFLEVENADLILLL---KEINSKKEISFPKNI-----DFIFIGTKSD-- 330 D I+ + + +E ADLIL + KE + +I + + K+D Sbjct: 90 DTGLPGHIRSQAEVAMEEADLILFVVDAKEGATAVDIDIAAELRRSGKPVMLAANKADSP 149 Query: 331 ---LYSTYTEEYD----HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378 L + E H +S+ G G+ + + + L + P IP R Sbjct: 150 SRELAAAAMHELGLGEVHAVSAAHGRGVGDFCDALLERLPAATEAQPTPIPPGTR 204 >gi|270293072|ref|ZP_06199283.1| ribosome-associated GTPase EngA [Streptococcus sp. M143] gi|270279051|gb|EFA24897.1| ribosome-associated GTPase EngA [Streptococcus sp. M143] Length = 436 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 46/179 (25%), Positives = 82/179 (45%), Gaps = 33/179 (18%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRE 279 K ++G N GKSSL NA+ +D I + + GTTRD + D +G + DTAG+R+ Sbjct: 176 KFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDADGQEFTMIDTAGMRK 235 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336 + + EK + R ++ +D++L++ +N+++ I Sbjct: 236 SGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEGI---------------------- 271 Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASL 395 EYD I+ F E + +I I+ NK+ L + K+ + + +YL A + Sbjct: 272 REYDKRIAGFAHEAGKGMI-----IVVNKWDTLEKDNHTMKKWEEDIREQFQYLPYAPI 325 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS+LFN +A + ++IV D+ G TRD + + + DT GI + D Sbjct: 6 IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRSFSMIDTGGIDDVD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + + +E AD+I+ + Sbjct: 66 APFMEQIKHQAEIAMEEADVIVFV 89 >gi|223993343|ref|XP_002286355.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220977670|gb|EED95996.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 465 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 31/81 (38%), Positives = 45/81 (55%), Gaps = 8/81 (9%) Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270 K G++ ++ ILG N GKS+L N+L +D I D PG TRD +++ L + V+ Sbjct: 143 KDGDMSNRPLQLAILGRQNVGKSTLVNSLLGEDRVIAGDTPGLTRDSISVPLMWKDKHVQ 202 Query: 271 ISDTAGIRETDDIVEKEGIKR 291 + DTAGIR G+KR Sbjct: 203 LVDTAGIR--------RGVKR 215 >gi|328881436|emb|CCA54675.1| GTP-binding protein EngA [Streptomyces venezuelae ATCC 10712] Length = 482 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 41/69 (59%) Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270 + G + +I ++G N GKSSL N +A +D +V ++ GTTRD + ++L G K Sbjct: 211 RFGNTVGGPRRIALIGRPNVGKSSLLNKVANEDRVVVNELAGTTRDPVDELIELGGVTWK 270 Query: 271 ISDTAGIRE 279 DTAGIR+ Sbjct: 271 FVDTAGIRK 279 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 32/55 (58%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 + ++G N GKS+L N + + A+V D PG TRD +T + + G K+ DT G Sbjct: 47 LAVVGRPNVGKSTLVNRIIGRREAVVEDKPGVTRDRVTYEAEWAGRRFKVVDTGG 101 >gi|310778034|ref|YP_003966367.1| ribosome-associated GTPase EngA [Ilyobacter polytropus DSM 2926] gi|309747357|gb|ADO82019.1| ribosome-associated GTPase EngA [Ilyobacter polytropus DSM 2926] Length = 439 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/87 (39%), Positives = 52/87 (59%), Gaps = 7/87 (8%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGIRETD 281 I+G NAGKSSL N L+ K+ AIV+DI GTTRD + T + + Y+ + DTAGIR Sbjct: 181 IIGKPNAGKSSLVNRLSGKERAIVSDIAGTTRDAIDTTFEYNYNKYI--LIDTAGIRRKS 238 Query: 282 DI---VEKEGIKRTFLEVENADLILLL 305 + +E + R ++ +D+ +L+ Sbjct: 239 KVEESLEYYSVLRAIKTIKRSDVCMLM 265 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN L +AIV D PG TRD L + D G I DT G+ + Sbjct: 5 VAIVGRPNVGKSTLFNKLVGDRIAIVDDQPGVTRDRLYRETDWLGTEFVIVDTGGLEPRN 64 Query: 282 -DIVEKEGIKRTFLEVENADLILLL 305 D + + ++ + + AD+IL + Sbjct: 65 KDFMMTKIKQQAEVAINEADVILFV 89 >gi|238852698|ref|ZP_04643108.1| ribosome-associated GTPase EngA [Lactobacillus gasseri 202-4] gi|282852069|ref|ZP_06261427.1| ribosome-associated GTPase EngA [Lactobacillus gasseri 224-1] gi|238834844|gb|EEQ27071.1| ribosome-associated GTPase EngA [Lactobacillus gasseri 202-4] gi|282556829|gb|EFB62433.1| ribosome-associated GTPase EngA [Lactobacillus gasseri 224-1] Length = 435 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 3/85 (3%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 ++G N GKSSL NA+ + IV++I GTTRD + +G I DTAGIR + Sbjct: 179 VIGRPNVGKSSLVNAILGEQRVIVSNIEGTTRDAIDTTFTNDGQKYTIVDTAGIRRRGKV 238 Query: 284 VEKE---GIKRTFLEVENADLILLL 305 EK + R +E +D+ LL+ Sbjct: 239 YEKTEKYSVLRAISAIEESDITLLV 263 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 48/89 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS++FN + VAIV D G TRD + + G+ + DT GI Sbjct: 6 VALVGRPNVGKSTIFNRIINSRVAIVEDKAGVTRDRIYARAEWMGHEFILIDTGGITLDS 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310 +E++ + + ++ AD+I++L ++ Sbjct: 66 GEIEEQIKAQAEIAIDEADVIVMLGDVTQ 94 >gi|225352117|ref|ZP_03743140.1| hypothetical protein BIFPSEUDO_03732 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157364|gb|EEG70703.1| hypothetical protein BIFPSEUDO_03732 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 709 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 80/177 (45%), Gaps = 19/177 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+L N + + A+V D PG TRD ++ D + G K+ DT G Sbjct: 275 LAVVGRPNVGKSTLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADV 334 Query: 282 DIVEKEGIKRTFLEVENADLILLLKE-----INSKKEI-----SFPKNIDFIFIGTKSDL 331 + +E + + V+ AD ++L+ + N+ + I + K + + + D Sbjct: 335 EGIESAIASQAQIAVQLADAVVLVVDGQVGLTNTDERIVKMLRASGKPV-TLAVNKVDDR 393 Query: 332 YSTY-TEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380 S Y T E+ + IS+ G G+ EL++ L K F PSH R + Sbjct: 394 ESEYLTAEFWKMGLGEPYGISAMHGRGIGELLDAALDSLKKAEKTSGFLTPSHLRRV 450 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 4/60 (6%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGIR 278 ++ ++G N GKSSL N LA ++ +V D+ GTTRD + + +D E +L DTAGI+ Sbjct: 449 RVALVGRPNVGKSSLLNQLAHEERTVVNDLAGTTRDPVDEVVTVDGEDWL--FIDTAGIK 506 >gi|219682497|ref|YP_002468881.1| 50S ribosomal subunit stability factor (YfgK) [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|254783142|sp|B8D8C1|DER_BUCAT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|219622230|gb|ACL30386.1| 50S ribosomal subunit stability factor (YfgK) [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|311086326|gb|ADP66408.1| GTP-binding protein EngA [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086900|gb|ADP66981.1| GTP-binding protein EngA [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] Length = 453 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 53/166 (31%), Positives = 80/166 (48%), Gaps = 19/166 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRET 280 IV++G +N GKS+LFN L K A+V + PG TRD L+ + + DTAG+ Sbjct: 5 IVLIGRTNVGKSTLFNVLTKTRDALVANYPGITRDRQYGYCKLQSNKKIILIDTAGLDIK 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL---------------KEIN--SKKEISFPKNIDFI 323 + +EK+ +T + ++ A LIL L K I KK I ID I Sbjct: 65 LNEIEKQAQAQTLIAIKEAHLILFLVNARDGLMPQEYEISKNIRKYQKKTILVINKIDGI 124 Query: 324 FIGTKSDLYSTYTEEYDHLISSFTGEGLEELINK-IKSILSNKFKK 368 +K + + + E IS+ +G+ LIN+ + +S KFKK Sbjct: 125 NEASKINEFYSLGFEKIQKISASHNQGINTLINRYLIPWISEKFKK 170 Score = 45.1 bits (105), Expect = 0.020, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 7/90 (7%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT--IDLDLEGYLVKISDTAGIR 278 K+ +G N GKS+L N + K++ I ++ PGTT D ++ I + E Y + DTAG Sbjct: 188 KVAFIGRPNVGKSTLINGILKEERMITSNTPGTTLDSISTPIKYNYENYT--LIDTAGAS 245 Query: 279 ETDDIV---EKEGIKRTFLEVENADLILLL 305 + + ++ I +T +E +++ILL+ Sbjct: 246 KKKKKINDFQRFSIIKTLQTIEKSNVILLI 275 >gi|311087490|gb|ADP67570.1| GTP-binding protein EngA [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 453 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 53/166 (31%), Positives = 80/166 (48%), Gaps = 19/166 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRET 280 IV++G +N GKS+LFN L K A+V + PG TRD L+ + + DTAG+ Sbjct: 5 IVLIGRTNVGKSTLFNVLTKTRDALVANYPGITRDRQYGYCKLQSNKKIILIDTAGLDIK 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL---------------KEIN--SKKEISFPKNIDFI 323 + +EK+ +T + ++ A LIL L K I KK I ID I Sbjct: 65 LNEIEKQAQAQTLIAIKEAHLILFLVNARDGLMPQEYEISKNIRKYQKKTILVINKIDGI 124 Query: 324 FIGTKSDLYSTYTEEYDHLISSFTGEGLEELINK-IKSILSNKFKK 368 +K + + + E IS+ +G+ LIN+ + +S KFKK Sbjct: 125 NEASKINEFYSLGFEKIQKISASHNQGINTLINRYLIPWISEKFKK 170 Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 7/90 (7%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT--IDLDLEGYLVKISDTAGIR 278 K+ +G N GKS+L N + K++ I ++ PGTT D ++ I + E Y + DTAG Sbjct: 188 KVAFIGRPNVGKSTLINGILKEERMITSNTPGTTLDSISTPIKYNYENYT--LIDTAGAS 245 Query: 279 ETDDIV---EKEGIKRTFLEVENADLILLL 305 + + ++ I +T +E +++ILL+ Sbjct: 246 KKKKKINDFQRFSIIKTLQTIEKSNVILLI 275 >gi|91070353|gb|ABE11270.1| GTP-binding protein [uncultured Prochlorococcus marinus clone HF10-88F10] Length = 457 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 3/85 (3%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 I+G N GKSSL N++ + AIV+DI GTT D + + KI DTAGIR ++ Sbjct: 181 IIGRPNVGKSSLLNSICGEKRAIVSDISGTTTDSIDTLIKKGDNYWKIIDTAGIRRKKNV 240 Query: 284 ---VEKEGIKRTFLEVENADLILLL 305 E GI R F ++ +D+ +L+ Sbjct: 241 KYGTEFFGINRAFKSIDRSDVCVLV 265 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 35/89 (39%), Positives = 47/89 (52%), Gaps = 1/89 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS+L N L + + AIV D PG TRD + G +I DT G+ D Sbjct: 6 IAIIGRPNVGKSTLVNRLCQSNDAIVFDKPGVTRDRTYQNASWGGKEFQIVDTGGLVFDD 65 Query: 282 DIVEKEGIK-RTFLEVENADLILLLKEIN 309 D I+ + FL +E A L LL+ + N Sbjct: 66 DSEFLPEIRTQVFLALEEASLALLVVDGN 94 >gi|157412804|ref|YP_001483670.1| GTP-binding protein EngA [Prochlorococcus marinus str. MIT 9215] gi|166920102|sp|A8G3A3|DER_PROM2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|157387379|gb|ABV50084.1| GTP-binding protein (HSR1-related) [Prochlorococcus marinus str. MIT 9215] Length = 457 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 3/85 (3%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 I+G N GKSSL N++ + AIV+DI GTT D + + KI DTAGIR ++ Sbjct: 181 IIGRPNVGKSSLLNSICGEKRAIVSDISGTTTDSIDTLIKKGDNYWKIIDTAGIRRKKNV 240 Query: 284 ---VEKEGIKRTFLEVENADLILLL 305 E GI R F ++ +D+ +L+ Sbjct: 241 KYGTEFFGINRAFKSIDRSDVCVLV 265 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 35/89 (39%), Positives = 47/89 (52%), Gaps = 1/89 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS+L N L + + AIV D PG TRD + G +I DT G+ D Sbjct: 6 IAIIGRPNVGKSTLVNRLCQSNDAIVFDKPGVTRDRTYQNASWGGKEFQIVDTGGLVFDD 65 Query: 282 DIVEKEGIK-RTFLEVENADLILLLKEIN 309 D I+ + FL +E A L LL+ + N Sbjct: 66 DSEFLPEIRTQVFLALEEASLALLVVDGN 94 >gi|226946062|ref|YP_002801135.1| GTP-binding protein EngA [Azotobacter vinelandii DJ] gi|259645867|sp|C1DE52|DER_AZOVD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|226720989|gb|ACO80160.1| Small GTP-binding protein EngA [Azotobacter vinelandii DJ] Length = 491 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 53/92 (57%), Gaps = 3/92 (3%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 ++G KI I+G N GKS+L N + ++ IV D GTTRD + I + + + DTAG Sbjct: 193 KDGIKIAIIGRPNVGKSTLVNRMLGEERVIVYDQAGTTRDSIYIPFERDEDKYTLIDTAG 252 Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLL 305 +R I VEK + +T +++A++++ + Sbjct: 253 VRRRGKIFEAVEKFSVVKTLQAIQDANVVIFV 284 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 45/84 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L K AIV + G TRD + +G + DT GI + Sbjct: 5 IALVGRPNVGKSTLFNRLTKTRDAIVAEYAGLTRDRQYGEAKWQGRTYIVIDTGGISGDE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + ++ + +++ +E AD +L + Sbjct: 65 EGIDAKMAEQSLQAIEEADAVLFM 88 >gi|312869092|ref|ZP_07729266.1| ribosome biogenesis GTPase Der [Lactobacillus oris PB013-T2-3] gi|311095338|gb|EFQ53608.1| ribosome biogenesis GTPase Der [Lactobacillus oris PB013-T2-3] Length = 437 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 41/154 (26%), Positives = 73/154 (47%), Gaps = 17/154 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN +A + ++IV D PG TRD + + G + DT GI +D Sbjct: 6 VAIVGRPNVGKSTLFNRIAGERISIVEDTPGVTRDRIYAHGEWLGKNFNMIDTGGIELSD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYS 333 + + ++ + ++ AD+I+L+ ++ S I + N + K D Sbjct: 66 QPLLTQIRQQAEIAIDEADVIVLVVDVESGVTDADEQVARILYRSNKPVVLAVNKVDNPE 125 Query: 334 TYTEEYD---------HLISSFTGEGLEELINKI 358 + YD + +SS G GL +L++ + Sbjct: 126 RRNDIYDFYSLGLGEPYPVSSVHGVGLGDLLDAV 159 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 50/86 (58%), Gaps = 4/86 (4%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRETDD 282 ++G N GKSSL N + ++ IV+++ GTTRD + T + +G + DTAGIR+ Sbjct: 179 LIGRPNVGKSSLVNGILGENRVIVSNMAGTTRDAINTRFVAKDGQEFTMIDTAGIRKQGK 238 Query: 283 I---VEKEGIKRTFLEVENADLILLL 305 I E+ + R ++ +D++L++ Sbjct: 239 IYENTERYALMRAMRAIDGSDVVLVV 264 >gi|332185040|ref|ZP_08386789.1| ribosome-associated GTPase EngA [Sphingomonas sp. S17] gi|332014764|gb|EGI56820.1| ribosome-associated GTPase EngA [Sphingomonas sp. S17] Length = 456 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/85 (40%), Positives = 46/85 (54%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN L K +A+V D PG TRD D L G ++ DTAG + D Sbjct: 7 VAIVGRPNVGKSTLFNRLVGKKLALVDDRPGVTRDRREGDAHLLGLDFRVIDTAGYEDED 66 Query: 282 -DIVEKEGIKRTFLEVENADLILLL 305 D + ++T V AD+ L L Sbjct: 67 PDTLPGRMRRQTEAAVGEADVALFL 91 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 33/93 (35%), Positives = 49/93 (52%), Gaps = 8/93 (8%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-----DLEGYLVKISDTA 275 K+ I+G NAGKS+L N +D I G TRD + ID D E V++ DTA Sbjct: 185 KLAIVGRPNAGKSTLINRFLGQDRLITGPEAGITRDSIAIDWEWRDRDGEVRQVRLIDTA 244 Query: 276 GIR---ETDDIVEKEGIKRTFLEVENADLILLL 305 G+R + D +EK + V+ A++++LL Sbjct: 245 GMRKKAKVQDKLEKLSVADALRAVDFAEVVVLL 277 >gi|116626742|ref|YP_828898.1| GTP-binding protein Era [Candidatus Solibacter usitatus Ellin6076] gi|116229904|gb|ABJ88613.1| GTP-binding protein Era [Candidatus Solibacter usitatus Ellin6076] Length = 304 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 1/95 (1%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R+G+ + ++G NAGKS+L NAL + VAIV D P TTR + L L + +DT G Sbjct: 6 RSGF-VSLIGRPNAGKSTLLNALVGQKVAIVADKPQTTRTSIQGVLTLPEAQIVFADTPG 64 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311 I + D + K + +E DL+L + + K Sbjct: 65 IHKADTPLNKRLMDTVRGALEERDLLLFVADATRK 99 >gi|319946441|ref|ZP_08020678.1| ribosome-associated GTPase EngA [Streptococcus australis ATCC 700641] gi|319747409|gb|EFV99665.1| ribosome-associated GTPase EngA [Streptococcus australis ATCC 700641] Length = 436 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 72/148 (48%), Gaps = 31/148 (20%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRE 279 K ++G N GKSSL NA+ +D I + + GTTRD + D EG + DTAG+R+ Sbjct: 176 KFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDAEGQEYTMIDTAGMRK 235 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336 + + EK + R ++ +D++L++ +N+++ I Sbjct: 236 SGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEGI---------------------- 271 Query: 337 EEYDHLISSF---TGEGLEELINKIKSI 361 EYD I+ F G+G+ ++NK ++ Sbjct: 272 REYDKRIAGFAHEAGKGMIIVVNKWDTL 299 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN +A + ++IV D+ G TRD + + + I DT GI + D Sbjct: 6 VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATAEWLNHQFSIIDTGGIDDVD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + + ++ AD+I+ + Sbjct: 66 APFMEQIKHQAEIAMDEADVIVFV 89 >gi|315929258|gb|EFV08474.1| small GTP-binding domain protein [Campylobacter jejuni subsp. jejuni 305] Length = 394 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 44/144 (30%), Positives = 74/144 (51%), Gaps = 27/144 (18%) Query: 154 LSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGK-- 211 L LY +W++K H F+ D EEE++++F + +GK Sbjct: 83 LDELY-EWLEKFLH-EEFLIPD----EEENLEDFLE----------------YYEEGKEF 120 Query: 212 -LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270 E+ +N ++ I+G N GKSSL NAL K++ ++V+ I GTT D + + + +++ Sbjct: 121 QFKEVEQNHIRVGIVGRVNVGKSSLLNALVKQERSVVSSIAGTTIDPVNESVVHKDKVIE 180 Query: 271 ISDTAGIRETDDI--VEKEGIKRT 292 DTAGIR+ I +E+ + RT Sbjct: 181 FVDTAGIRKRGKIQGLERFALNRT 204 >gi|146283357|ref|YP_001173510.1| GTP-binding protein EngA [Pseudomonas stutzeri A1501] gi|166225844|sp|A4VNW7|DER_PSEU5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|145571562|gb|ABP80668.1| GTP-binding protein EngA [Pseudomonas stutzeri A1501] gi|327481749|gb|AEA85059.1| GTP-binding protein EngA [Pseudomonas stutzeri DSM 4166] Length = 499 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 3/92 (3%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 + G KI I+G N GKS+L N + ++ IV D GTTRD + I + + + DTAG Sbjct: 201 KEGIKIAIIGRPNVGKSTLVNRMLGEERVIVYDQAGTTRDSIYIPFERDEEKYTLIDTAG 260 Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLL 305 +R I VEK + +T +++A++++ + Sbjct: 261 VRRRGKIFEAVEKFSVVKTLQAIQDANVVIFV 292 Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 45/84 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L K AIV + G TRD + +G + DT GI + Sbjct: 5 IALVGRPNVGKSTLFNRLTKSRDAIVAEYAGLTRDRQYGEAKWQGRTYIVIDTGGISGDE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + ++ + +++ +E AD +L + Sbjct: 65 EGIDAKMAEQSLQAIEEADAVLFM 88 >gi|8134431|sp|Q49884|DER_MYCLE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|467147|gb|AAA50911.1| u0247e [Mycobacterium leprae] Length = 461 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 42/169 (24%), Positives = 75/169 (44%), Gaps = 29/169 (17%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G + ++G N GKS+L N + + A+V D+PG TRD ++ D G + DT G Sbjct: 24 GPVVAVVGRPNVGKSTLVNRILGRREAVVQDVPGVTRDRVSYDAMWTGRRFVVQDTGGWE 83 Query: 279 ETDDIVEKEGIKRTFLE-----VENADLILLLKEINSKKEIS-------FPKNIDFIFIG 326 + +G+KR E + AD ++L+ ++ + ++ +F+ Sbjct: 84 P-----DAKGLKRLVAEQASVAMRTADAVILVVDVGVGATDADEAAARILLRSGKLVFLA 138 Query: 327 TK-----------SDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364 S L+S E H IS+ G G+ +L++K+ + L N Sbjct: 139 ANKVDGEKGESDASALWSLGLGE-PHAISAMHGRGVADLLDKVLAALPN 186 Score = 43.5 bits (101), Expect = 0.070, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 51/90 (56%), Gaps = 7/90 (7%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ ++G N GKSSL N LA ++V + GTT D + +++ G + + DTAG+R Sbjct: 199 RVALVGKPNVGKSSLLNKLAGDQRSVVHEAAGTTVDPVDSLIEMGGRVWRFVDTAGLRRK 258 Query: 281 DDIVEKEGIK-----RTFLEVENADLILLL 305 + + G + RT +++A+++++L Sbjct: 259 --VGQASGHEFYASVRTHGAIDSAEVVIML 286 >gi|15617192|ref|NP_240405.1| GTP-binding protein EngA [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681942|ref|YP_002468328.1| 50S ribosomal subunit stability factor (YfgK) [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|257471654|ref|ZP_05635653.1| GTP-binding protein EngA [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|11132317|sp|P57662|DER_BUCAI RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|254783141|sp|B8D8G4|DER_BUCA5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|25328230|pir||C85000 hypothetical GTP-binding protein [imported] - Buchnera sp. (strain APS) gi|10039257|dbj|BAB13291.1| hypothetical GTP-binding protein [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219624785|gb|ACL30940.1| 50S ribosomal subunit stability factor (YfgK) [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] Length = 453 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 53/166 (31%), Positives = 80/166 (48%), Gaps = 19/166 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRET 280 IV++G +N GKS+LFN L K A+V + PG TRD L+ + + DTAG+ Sbjct: 5 IVLIGRTNVGKSTLFNVLTKTRDALVANYPGITRDRQYGYCKLQSNKKIILIDTAGLDIK 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL---------------KEIN--SKKEISFPKNIDFI 323 + +EK+ +T + ++ A LIL L K I KK I ID I Sbjct: 65 LNEIEKQAQAQTLIAIKEAHLILFLVNARDGLMPQEYEISKNIRKYQKKTILVINKIDGI 124 Query: 324 FIGTKSDLYSTYTEEYDHLISSFTGEGLEELINK-IKSILSNKFKK 368 +K + + + E IS+ +G+ LIN+ + +S KFKK Sbjct: 125 NEASKINEFYSLGFEKIQKISASHNQGINTLINRYLIPWISEKFKK 170 Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 7/90 (7%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT--IDLDLEGYLVKISDTAGIR 278 K+ +G N GKS+L N + K++ I ++ PGTT D ++ I + E Y + DTAG Sbjct: 188 KVAFIGRPNVGKSTLINGILKEERMITSNTPGTTLDSISTPIKYNYENYT--LIDTAGAS 245 Query: 279 ETDDIV---EKEGIKRTFLEVENADLILLL 305 + + ++ I +T +E +++ILL+ Sbjct: 246 KKKKKINDFQRFSIIKTLQTIEKSNVILLI 275 >gi|325475284|gb|EGC78469.1| GTP-binding protein EngA [Treponema denticola F0402] Length = 476 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 49/181 (27%), Positives = 84/181 (46%), Gaps = 29/181 (16%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 +I I+G N GKS+L N L +I++++ GTTRD++ + + I DTAGIR Sbjct: 210 RITIVGKPNTGKSTLANYLTGSSASIISNVAGTTRDIVEGEFSYKNKKFLIQDTAGIRRK 269 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPKN--IDFIFIGTKS 329 + ++ +E + R ++NAD++ L ++ KK I N + IF+ K Sbjct: 270 AKVNEDIEYYSVVRAIKSMDNADIVFHLIDVQEGLTEQDKKIIVQATNRGLGVIFVLNKW 329 Query: 330 DLY----STYTEEYDHL--------------ISSFTGEGLEELINKIKSILSNKFKKLPF 371 DL + +E + + IS+ G G++EL+N + KK+ Sbjct: 330 DLMEQTKKAFKDEEERIKVMFGKMDYAPVLAISANEGTGIKELLNTAVKMFEQLNKKIET 389 Query: 372 S 372 S Sbjct: 390 S 390 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 6/90 (6%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET- 280 I I+G N GKS+LFN +K +I PG TRD + + G V + DT G + T Sbjct: 33 IAIVGRPNVGKSTLFNRFLRKRRSITDPTPGVTRDPVEAQAIVNGLPVMLVDTGGFKLTR 92 Query: 281 -----DDIVEKEGIKRTFLEVENADLILLL 305 +D +++ +++T ++ AD ILLL Sbjct: 93 SGDAFEDTIDELVMEKTISTLKKADRILLL 122 >gi|94986558|ref|YP_594491.1| GTP-binding protein EngA [Lawsonia intracellularis PHE/MN1-00] gi|166225821|sp|Q1MS56|DER_LAWIP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|94730807|emb|CAJ54169.1| predicted GTPases [Lawsonia intracellularis PHE/MN1-00] Length = 453 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 78/166 (46%), Gaps = 31/166 (18%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 K+ I+G NAGKSS+ NA+ K+ IV++I GTTRD + I DTAGIR Sbjct: 189 ALKLAIIGRPNAGKSSIINAIIGKNKLIVSNIAGTTRDSIDIPFIFNKTQYLFVDTAGIR 248 Query: 279 ---ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF----------PKNIDFIFI 325 + D VE+ + + A++ L + I++ + I+ + I FI + Sbjct: 249 RRTKITDPVERFSVNASIKSATKANITLYV--IDATEGITAQDKRLLDLLDTRKIPFILL 306 Query: 326 GTKSDLYS---------TYTEEYDH-------LISSFTGEGLEELI 355 K+DL + ++ EE ++S+ T GL+++I Sbjct: 307 INKTDLIAKKQKTLLSKSFKEELQFCPHIPILMVSAVTSSGLDQII 352 Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust. Identities = 20/36 (55%), Positives = 25/36 (69%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 KI ++G N GKS+LFN L +K+ AI D PG TRD Sbjct: 4 KIALVGRPNVGKSTLFNRLIRKNRAITHDRPGVTRD 39 >gi|15598994|ref|NP_252488.1| GTP-binding protein EngA [Pseudomonas aeruginosa PAO1] gi|107103319|ref|ZP_01367237.1| hypothetical protein PaerPA_01004388 [Pseudomonas aeruginosa PACS2] gi|152985588|ref|YP_001346699.1| GTP-binding protein EngA [Pseudomonas aeruginosa PA7] gi|254236703|ref|ZP_04930026.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|254242490|ref|ZP_04935812.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|313109217|ref|ZP_07795185.1| putative GTP-binding protein EngA [Pseudomonas aeruginosa 39016] gi|26006739|sp|Q9HXJ8|DER_PSEAE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|166225840|sp|A6V0W4|DER_PSEA7 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|9949972|gb|AAG07186.1|AE004798_9 conserved hypothetical protein [Pseudomonas aeruginosa PAO1] gi|126168634|gb|EAZ54145.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|126195868|gb|EAZ59931.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|150960746|gb|ABR82771.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7] gi|310881687|gb|EFQ40281.1| putative GTP-binding protein EngA [Pseudomonas aeruginosa 39016] Length = 493 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 3/92 (3%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 ++G KI I+G N GKS+L N + ++ IV D GTTRD + I + + DTAG Sbjct: 195 KDGIKIAIIGRPNVGKSTLVNRMLGEERVIVYDQAGTTRDSIYIPFERNEEKYTLIDTAG 254 Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLL 305 +R I VEK + +T +++A++++ + Sbjct: 255 VRRRGKIFEAVEKFSVVKTLQAIQDANVVIFV 286 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 45/84 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L K AIV + G TRD + +G + DT GI + Sbjct: 5 IALVGRPNVGKSTLFNRLTKSRDAIVAEYAGLTRDRQYGEARWQGRTYIVIDTGGISGDE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + ++ + +++ +E AD +L L Sbjct: 65 EGIDAKMAEQSLQAIEEADAVLFL 88 >gi|229084606|ref|ZP_04216875.1| GTP-binding protein engA [Bacillus cereus Rock3-44] gi|228698682|gb|EEL51398.1| GTP-binding protein engA [Bacillus cereus Rock3-44] Length = 436 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 3/85 (3%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 ++G N GKSSL NAL ++ IV+++ GTTRD + +G I DTAG+R+ + Sbjct: 180 LIGRPNVGKSSLVNALLGQERVIVSNVAGTTRDAVDTPYSKDGQDYVIIDTAGMRKKGKV 239 Query: 284 ---VEKEGIKRTFLEVENADLILLL 305 EK + R +E +D++L++ Sbjct: 240 YESTEKYSVLRALRAIERSDVVLVV 264 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN + + V+IV DIPG TRD + + + I DT GI D Sbjct: 6 VAIVGRPNVGKSTIFNRIVGERVSIVEDIPGVTRDRIYSAGEWLNHEFNIIDTGGIDIGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + ++ + ++ +D+I+ + Sbjct: 66 EPFLTQIRQQAEVAIDESDVIIFM 89 >gi|187934744|ref|YP_001887658.1| GTP-binding protein [Clostridium botulinum B str. Eklund 17B] gi|187722897|gb|ACD24118.1| GTP-binding protein [Clostridium botulinum B str. Eklund 17B] Length = 395 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/128 (35%), Positives = 67/128 (52%), Gaps = 8/128 (6%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276 N I I G NAGKSSL NAL + +++V+D PGTT D ++ ++L V I DTAG Sbjct: 8 NRLHISIFGKRNAGKSSLINALTNQPLSLVSDTPGTTTDPVSKAMELLPLGPVVIIDTAG 67 Query: 277 IRETDDI--VEKEGIKRTFLEVENADLILLLKEINSKKEISF-----PKNIDFIFIGTKS 329 + +T D+ + E K L+ + A L+ ++ N + E + KNI I + K Sbjct: 68 LDDTGDLGTLRVEKTKEVMLKTDLAVLVFSAEDNNIENEKEWLKDLKQKNIPVIGVINKI 127 Query: 330 DLYSTYTE 337 DL + E Sbjct: 128 DLEMSNLE 135 >gi|296387686|ref|ZP_06877161.1| GTP-binding protein EngA [Pseudomonas aeruginosa PAb1] Length = 493 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 3/92 (3%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 ++G KI I+G N GKS+L N + ++ IV D GTTRD + I + + DTAG Sbjct: 195 KDGIKIAIIGRPNVGKSTLVNRMLGEERVIVYDQAGTTRDSIYIPFERNEEKYTLIDTAG 254 Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLL 305 +R I VEK + +T +++A++++ + Sbjct: 255 VRRRGKIFEAVEKFSVVKTLQAIQDANVVIFV 286 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 45/84 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L K AIV + G TRD + +G + DT GI + Sbjct: 5 IALVGRPNVGKSTLFNRLTKSRDAIVAEYAGLTRDRQYGEARWQGRTYIVIDTGGISGDE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + ++ + +++ +E AD +L L Sbjct: 65 EGIDAKMAEQSLQAIEEADAVLFL 88 >gi|228990617|ref|ZP_04150582.1| GTP-binding protein engA [Bacillus pseudomycoides DSM 12442] gi|228996716|ref|ZP_04156353.1| GTP-binding protein engA [Bacillus mycoides Rock3-17] gi|228763035|gb|EEM11945.1| GTP-binding protein engA [Bacillus mycoides Rock3-17] gi|228769143|gb|EEM17741.1| GTP-binding protein engA [Bacillus pseudomycoides DSM 12442] Length = 436 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 3/85 (3%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 ++G N GKSSL NAL ++ IV+++ GTTRD + +G I DTAG+R+ + Sbjct: 180 LIGRPNVGKSSLVNALLGQERVIVSNVAGTTRDAVDTPYSKDGQDYVIIDTAGMRKKGKV 239 Query: 284 ---VEKEGIKRTFLEVENADLILLL 305 EK + R +E +D++L++ Sbjct: 240 YESTEKYSVLRALRAIERSDVVLVV 264 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN + + V+IV DIPG TRD + + + I DT GI D Sbjct: 6 VAIVGRPNVGKSTIFNRIVGERVSIVEDIPGVTRDRIYSAGEWLNHEFNIIDTGGIDIGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + ++ + ++ AD+I+ + Sbjct: 66 EPFLTQIRQQAEVAIDEADVIIFM 89 >gi|254526548|ref|ZP_05138600.1| small GTP-binding protein domain [Prochlorococcus marinus str. MIT 9202] gi|221537972|gb|EEE40425.1| small GTP-binding protein domain [Prochlorococcus marinus str. MIT 9202] Length = 457 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 3/85 (3%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 I+G N GKSSL N++ + AIV+DI GTT D + + KI DTAGIR ++ Sbjct: 181 IIGRPNVGKSSLLNSICGEKRAIVSDISGTTTDSIDTLIKKGDNYWKIIDTAGIRRKKNV 240 Query: 284 ---VEKEGIKRTFLEVENADLILLL 305 E GI R F ++ +D+ +L+ Sbjct: 241 KYGTEFFGINRAFKSIDRSDVCVLV 265 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 35/89 (39%), Positives = 47/89 (52%), Gaps = 1/89 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS+L N L + + AIV D PG TRD + G +I DT G+ D Sbjct: 6 IAIIGRPNVGKSTLVNRLCQSNDAIVFDKPGVTRDRTYQNASWGGKEFQIVDTGGLVFDD 65 Query: 282 DIVEKEGIK-RTFLEVENADLILLLKEIN 309 D I+ + FL +E A L LL+ + N Sbjct: 66 DSEFLPEIRTQVFLALEEASLALLVVDGN 94 >gi|257876568|ref|ZP_05656221.1| GTP-binding protein engA [Enterococcus casseliflavus EC20] gi|257810734|gb|EEV39554.1| GTP-binding protein engA [Enterococcus casseliflavus EC20] Length = 436 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 4/89 (4%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRE 279 K ++G N GKSSL NA+ ++ IV+DI GTTRD + E G + DTAG+R+ Sbjct: 176 KFSLIGRPNVGKSSLINAILGEERVIVSDIEGTTRDAIDTHFTSESGQEFTMIDTAGMRK 235 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLL 305 I EK + R +E +D++L++ Sbjct: 236 KGKIYESTEKYSVMRAMRAIERSDVVLMV 264 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS++FN +A + ++IV D PG TRD + + G + DT GI +D Sbjct: 6 IAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYATGEWLGREFSVIDTGGIDLSD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + + + ++ AD+I+ + Sbjct: 66 EPFMDQIKHQAEIAIDEADVIVFI 89 >gi|332367384|gb|EGJ45117.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK1059] Length = 436 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 74/148 (50%), Gaps = 31/148 (20%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRE 279 K ++G N GKSSL NA+ ++ I + + GTTRD + T+ D EG + DTAG+R+ Sbjct: 176 KFSLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAIDTVFTDSEGQEFTMIDTAGMRK 235 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336 + + EK + R ++ +D++L++ +N+++ I Sbjct: 236 SGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEGI---------------------- 271 Query: 337 EEYDHLISSF---TGEGLEELINKIKSI 361 EYD I+ F G+G+ ++NK ++ Sbjct: 272 REYDKRIAGFAHEAGKGIVIVVNKWDTL 299 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 45/84 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS+LFN +A + ++IV D+ G TRD + I DT GI + D Sbjct: 6 IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATASWLNRKFSIIDTGGIDDVD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + + ++ AD+I+ + Sbjct: 66 APFMEQIKHQAEIAMDEADVIVFV 89 >gi|323485443|ref|ZP_08090791.1| small GTP-binding protein [Clostridium symbiosum WAL-14163] gi|323695069|ref|ZP_08109212.1| small GTP-binding protein [Clostridium symbiosum WAL-14673] gi|323401306|gb|EGA93656.1| small GTP-binding protein [Clostridium symbiosum WAL-14163] gi|323500871|gb|EGB16790.1| small GTP-binding protein [Clostridium symbiosum WAL-14673] Length = 398 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 83/164 (50%), Gaps = 19/164 (11%) Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKI 271 GE I G+ G NAGKSSL NA+ +++AIV+++ GTT D + ++L V I Sbjct: 9 GERIHIGF----FGRRNAGKSSLVNAVTGQELAIVSEVKGTTTDPVCKSMELLPLGPVMI 64 Query: 272 SDTAGIRETDDIVEKE-GIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDF 322 DT GI + ++ EK G R L D+ +L+ + ++ K I KNI + Sbjct: 65 IDTPGIDDEGELGEKRVGKSRQIL--NKTDIAVLVVDASAGKGEQEDRLIRIFRRKNIPY 122 Query: 323 IFIGTKSDLYSTYTEE---YDHLISSFTGEGLEELINKIKSILS 363 + K+DL E ++ +S+ TG + EL +I +++S Sbjct: 123 LVAYNKTDLNGAEGTEGGRHEIWVSAATGYHIHELKERIAALVS 166 >gi|306834169|ref|ZP_07467289.1| ribosome-associated GTPase EngA [Streptococcus bovis ATCC 700338] gi|304423742|gb|EFM26888.1| ribosome-associated GTPase EngA [Streptococcus bovis ATCC 700338] Length = 436 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 74/148 (50%), Gaps = 31/148 (20%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRE 279 K ++G N GKSSL NA+ ++ I + I GTTRD + + D +G + DTAG+R+ Sbjct: 176 KFSLIGRPNVGKSSLINAILGEERVIASPIAGTTRDAIDTNFTDSDGQEYTMIDTAGMRK 235 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336 + + EK + R+ ++ +D++L++ IN+++ I Sbjct: 236 SGKVYENTEKYSVMRSMRAIDRSDIVLMV--INAEEGI---------------------- 271 Query: 337 EEYDHLISSF---TGEGLEELINKIKSI 361 EYD I+ F G+G+ ++NK +I Sbjct: 272 REYDKRIAGFAHEAGKGIIIVVNKWDTI 299 Score = 43.9 bits (102), Expect = 0.046, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 45/84 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN +A + ++IV D+ G TRD + + + DT GI + D Sbjct: 6 VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTTGEWLNRKFSLIDTGGIDDVD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + + + AD+I+ + Sbjct: 66 APFMEQIKHQADIAMTEADVIVFV 89 >gi|251778361|ref|ZP_04821281.1| GTP-binding protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082676|gb|EES48566.1| GTP-binding protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 397 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/128 (35%), Positives = 67/128 (52%), Gaps = 8/128 (6%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276 N I I G NAGKSSL NAL + +++V+D PGTT D ++ ++L V I DTAG Sbjct: 8 NRLHISIFGKRNAGKSSLINALTNQPLSLVSDTPGTTTDPVSKAMELLPLGPVVIIDTAG 67 Query: 277 IRETDDI--VEKEGIKRTFLEVENADLILLLKEINSKKEISF-----PKNIDFIFIGTKS 329 + +T D+ + E K L+ + A L+ ++ N + E + KNI I + K Sbjct: 68 LDDTGDLGTLRVEKTKEVMLKTDLAVLVFSAEDNNIENEKEWFKDLKQKNIPVIGVLNKI 127 Query: 330 DLYSTYTE 337 DL + E Sbjct: 128 DLGMSNLE 135 >gi|163746867|ref|ZP_02154224.1| GTP-binding protein EngA [Oceanibulbus indolifex HEL-45] gi|161379981|gb|EDQ04393.1| GTP-binding protein EngA [Oceanibulbus indolifex HEL-45] Length = 493 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 1/87 (1%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 + + I+G N GKS+LFN L K +A+V D PG TRD+ L + DTAG+ E Sbjct: 3 FTLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGAAKLADLRFTVIDTAGLEE 62 Query: 280 -TDDIVEKEGIKRTFLEVENADLILLL 305 TDD ++ + T V+ AD+ L + Sbjct: 63 VTDDSLQGRMRRLTERAVDMADICLFM 89 Score = 40.8 bits (94), Expect = 0.44, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 5/71 (7%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-----YLVKISDTA 275 ++ ++G NAGKS+L N + +D + G TRD +++ + G ++I DTA Sbjct: 203 QVAVVGRPNAGKSTLINQILGEDRLLTGPEAGITRDAISLMTEWAGPDGDPVPMRIFDTA 262 Query: 276 GIRETDDIVEK 286 G+R+ I EK Sbjct: 263 GMRKKAKIQEK 273 >gi|15827717|ref|NP_301980.1| GTP-binding protein EngA [Mycobacterium leprae TN] gi|221230194|ref|YP_002503610.1| GTP-binding protein EngA [Mycobacterium leprae Br4923] gi|13093268|emb|CAC31753.1| possible GTP-binding protein [Mycobacterium leprae] gi|219933301|emb|CAR71467.1| possible GTP-binding protein [Mycobacterium leprae Br4923] Length = 462 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 42/169 (24%), Positives = 75/169 (44%), Gaps = 29/169 (17%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G + ++G N GKS+L N + + A+V D+PG TRD ++ D G + DT G Sbjct: 25 GPVVAVVGRPNVGKSTLVNRILGRREAVVQDVPGVTRDRVSYDAMWTGRRFVVQDTGGWE 84 Query: 279 ETDDIVEKEGIKRTFLE-----VENADLILLLKEINSKKEIS-------FPKNIDFIFIG 326 + +G+KR E + AD ++L+ ++ + ++ +F+ Sbjct: 85 P-----DAKGLKRLVAEQASVAMRTADAVILVVDVGVGATDADEAAARILLRSGKLVFLA 139 Query: 327 TK-----------SDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364 S L+S E H IS+ G G+ +L++K+ + L N Sbjct: 140 ANKVDGEKGESDASALWSLGLGE-PHAISAMHGRGVADLLDKVLAALPN 187 Score = 43.5 bits (101), Expect = 0.074, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 51/90 (56%), Gaps = 7/90 (7%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ ++G N GKSSL N LA ++V + GTT D + +++ G + + DTAG+R Sbjct: 200 RVALVGKPNVGKSSLLNKLAGDQRSVVHEAAGTTVDPVDSLIEMGGRVWRFVDTAGLRRK 259 Query: 281 DDIVEKEGIK-----RTFLEVENADLILLL 305 + + G + RT +++A+++++L Sbjct: 260 --VGQASGHEFYASVRTHGAIDSAEVVIML 287 >gi|261367335|ref|ZP_05980218.1| ribosome-associated GTPase EngA [Subdoligranulum variabile DSM 15176] gi|282570094|gb|EFB75629.1| ribosome-associated GTPase EngA [Subdoligranulum variabile DSM 15176] Length = 447 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 1/90 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS++FN L + +AIV D PG TRD + D + G + DT GI Sbjct: 6 VAIVGRPNVGKSTIFNKLTGQRLAIVEDTPGVTRDRIFCDCEWCGNKFLLVDTGGIEPRI 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310 DD + ++ + +++AD I+++ E+ + Sbjct: 66 DDGLLAHMREQAQIAIDSADCIIMVTELTN 95 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 7/89 (7%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK--ISDTAGIRE 279 + ++G N GKSSL N + ++ IV + GTTRD ID +E K +DTAG+R+ Sbjct: 180 VAVIGRPNVGKSSLINHILGENRLIVANEAGTTRD--AIDTLVENKYGKFVFTDTAGLRK 237 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLL 305 + VE+ + R+ VE + + +++ Sbjct: 238 KGKVESGVERYSVLRSLAAVERSRVCVIM 266 >gi|222149419|ref|YP_002550376.1| GTP-binding protein EngA [Agrobacterium vitis S4] gi|254783133|sp|B9JZQ5|DER_AGRVS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|221736402|gb|ACM37365.1| GTP-binding protein [Agrobacterium vitis S4] Length = 474 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 1/87 (1%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 + + I+G N GKS+LFN L K +A+V D PG TRD + L I DTAG+ E Sbjct: 3 FTVAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGEAKLVDLRFHIVDTAGLEE 62 Query: 280 TD-DIVEKEGIKRTFLEVENADLILLL 305 D +E +T + ++ ADL L + Sbjct: 63 AGADTLEGRMRAQTEIAIDEADLSLFV 89 Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 8/134 (5%) Query: 154 LSSLYGQ-WIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKL 212 +S+ +GQ ID I I D F E++D +V + L+ + + L Sbjct: 144 ISAEHGQGMIDLRDAIVEAIGVDRAFPEDDD-------DVAETDIVLRPTVEGEDDEEDL 196 Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272 ++ I+G NAGKS+L N +D + G TRD ++++ D G +K+ Sbjct: 197 AYDDTKPLRVAIVGRPNAGKSTLINRFLGEDRLLTGPEAGITRDSISVEWDWRGRTIKMF 256 Query: 273 DTAGIRETDDIVEK 286 DTAG+R ++EK Sbjct: 257 DTAGMRRKARVIEK 270 >gi|313890874|ref|ZP_07824498.1| ribosome biogenesis GTPase Der [Streptococcus pseudoporcinus SPIN 20026] gi|313120772|gb|EFR43887.1| ribosome biogenesis GTPase Der [Streptococcus pseudoporcinus SPIN 20026] Length = 436 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 42/151 (27%), Positives = 73/151 (48%), Gaps = 31/151 (20%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAG 276 N + ++G N GKSSL NA+ +D I + + GTTRD + D +G + DTAG Sbjct: 173 NIIRFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTSFTDSDGQEFTMIDTAG 232 Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYS 333 +R++ + EK + R ++ +D++L++ IN+++ I Sbjct: 233 MRKSGKVYENTEKYSVMRAMRAIDRSDVVLMV--INAEEGI------------------- 271 Query: 334 TYTEEYDHLISSF---TGEGLEELINKIKSI 361 EYD I+ F G+G+ ++NK +I Sbjct: 272 ---REYDKRIAGFAHEAGKGMIIVVNKWDTI 299 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN +A + ++IV D+ G TRD + + + DT GI + D Sbjct: 6 VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTTGEWLNRKFSLIDTGGIDDVD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + + ++ AD+I+ + Sbjct: 66 APFMEQIKHQAQIAMDEADVIVFV 89 >gi|227431693|ref|ZP_03913723.1| GTP-binding protein EngA [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352517|gb|EEJ42713.1| GTP-binding protein EngA [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 436 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN +A + +AIV D+PG TRD L + Y ++ DT GI D Sbjct: 6 VAIVGRPNVGKSTIFNRMAGERIAIVEDMPGVTRDRLYAPAEWLNYEFRMIDTGGIEIGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 E + L + AD+I+++ Sbjct: 66 APFLAEIRGQVELAINEADVIVMV 89 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 32/86 (37%), Positives = 51/86 (59%), Gaps = 4/86 (4%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRETDD 282 I+G N GKSS+ NA+ + IV+DI GTTRD + T + EG + DTAG+R+ Sbjct: 179 IIGRPNVGKSSIVNAMLGEKRVIVSDIEGTTRDAIDTRFVTEEGDEFVMVDTAGMRKRGK 238 Query: 283 I---VEKEGIKRTFLEVENADLILLL 305 I EK + R ++++++IL++ Sbjct: 239 IYENTEKYSVMRAMKAIDDSNVILMV 264 >gi|330752472|emb|CBL87421.1| GTP-binding protein engA [uncultured Flavobacteria bacterium] Length = 435 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 K+ ++G N GKS+ N + ++ IVTDI GTTRD + + G+ +I DTAG+R Sbjct: 177 KLAVVGKPNVGKSTFINTILGEERNIVTDIAGTTRDSVHTHYQMFGFDFEIVDTAGLRKK 236 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305 + D +E RT ++ +D+ LL+ Sbjct: 237 KQVTDHLEFYSTVRTIKAIDESDVCLLM 264 Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 1/88 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 + I+G N GKS+LFN L + AI D GTTRD + + + DT G I ++ Sbjct: 5 VAIVGRPNVGKSTLFNRLTETREAITDDTSGTTRDRKYGTVVWTNHQFNVIDTGGWITKS 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308 DD E + + +E ADLIL + EI Sbjct: 65 DDSFEAAIRGQVEISLEEADLILFMVEI 92 >gi|307264991|ref|ZP_07546552.1| small GTP-binding protein [Thermoanaerobacter wiegelii Rt8.B1] gi|326390092|ref|ZP_08211654.1| small GTP-binding protein [Thermoanaerobacter ethanolicus JW 200] gi|306919976|gb|EFN50189.1| small GTP-binding protein [Thermoanaerobacter wiegelii Rt8.B1] gi|325993957|gb|EGD52387.1| small GTP-binding protein [Thermoanaerobacter ethanolicus JW 200] Length = 407 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 52/153 (33%), Positives = 80/153 (52%), Gaps = 22/153 (14%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAGIRET 280 I + G NAGKSSL NAL ++VA+V+DI GTT D ++ ++ L V I DTAG+ + Sbjct: 12 IALFGRRNAGKSSLINALTNQEVALVSDIAGTTTDPVSKAMEILPIGPVVIIDTAGLDDV 71 Query: 281 DDIVEKEGIKRTFLEVENADLILL-------LKEINSK-KEISFPKNIDFIFIGTKSDLY 332 + E +K+T+ + DL +L + E K +I KNI + + K DL Sbjct: 72 GPLGELR-VKKTYEVLNKTDLAILVIDGTEGVTEFEEKILQIITEKNIPVVGVINKKDL- 129 Query: 333 STYTE----EYDHL-------ISSFTGEGLEEL 354 S Y++ E++ +S+ EG+EEL Sbjct: 130 SNYSQLQKKEWEKRLNLKLIEVSARNKEGIEEL 162 >gi|209545222|ref|YP_002277451.1| GTP-binding protein EngA [Gluconacetobacter diazotrophicus PAl 5] gi|209532899|gb|ACI52836.1| small GTP-binding protein [Gluconacetobacter diazotrophicus PAl 5] Length = 479 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 35/59 (59%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +VI G N GKS+LFN L + A+V D PG TRD + + G V++ DTAG+ E Sbjct: 16 VVIAGRPNVGKSTLFNRLVGRRQALVADTPGVTRDRKEAETVMRGRRVRLVDTAGLEEA 74 Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 3/87 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G NAGKS+L N L ++ I PG TRD +T+ L E +++ DTAG+R Sbjct: 212 RLAIVGRPNAGKSTLLNRLLGEERMITGPEPGLTRDSVTVLLHDEHGPIQLVDTAGLRRR 271 Query: 281 DDI---VEKEGIKRTFLEVENADLILL 304 I +EK + T ++ A++++L Sbjct: 272 ARIEESLEKMSVSATIEALKMAEVVVL 298 >gi|327490071|gb|EGF21859.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK1058] Length = 436 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 74/148 (50%), Gaps = 31/148 (20%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRE 279 K ++G N GKSSL NA+ ++ I + + GTTRD + T+ D EG + DTAG+R+ Sbjct: 176 KFSLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAIDTVFTDSEGQEFTMIDTAGMRK 235 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336 + + EK + R ++ +D++L++ +N+++ I Sbjct: 236 SGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEGI---------------------- 271 Query: 337 EEYDHLISSF---TGEGLEELINKIKSI 361 EYD I+ F G+G+ ++NK ++ Sbjct: 272 REYDKRIAGFAHEAGKGIVIVVNKWDTL 299 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 45/84 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS+LFN +A + ++IV D+ G TRD + I DT GI + D Sbjct: 6 IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATASWLNRKFSIIDTGGIDDVD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + + ++ AD+I+ + Sbjct: 66 APFMEQIKHQAEIAMDEADVIVFV 89 >gi|325068743|ref|ZP_08127416.1| GTP-binding protein Der [Actinomyces oris K20] Length = 533 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 54/90 (60%), Gaps = 4/90 (4%) Query: 189 SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVT 248 S EVL+ ++ + ++S+ + G++ ++I ++G N GKSSL N++A ++ +V Sbjct: 245 SGEVLDAVMEVLPEVSAVATAAPEGDL----HRIALVGRPNVGKSSLLNSIAGRERVVVN 300 Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 + GTTRD + ++L+G DTAGIR Sbjct: 301 ETAGTTRDPVDEIIELDGRQWVFVDTAGIR 330 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 35/127 (27%), Positives = 62/127 (48%), Gaps = 3/127 (2%) Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKL--GEIIRNGYKIV-ILGHSNAGKSSLFNA 238 ED++ + + L D + D++ + G L G+ + G ++ ++G N GKS+L N Sbjct: 56 EDLRAQAMRAGLADYELDEEDLALLEADGGLPTGDSVEPGLPVLAVVGRPNVGKSTLVNR 115 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 + + A+V D PG TRD ++ + G I DT G ++ + + VE Sbjct: 116 VLGRREAVVQDTPGVTRDRVSYPAEWAGRRFTIVDTGGWEVDVAGLDAAVATQAEIAVEM 175 Query: 299 ADLILLL 305 AD +LL+ Sbjct: 176 ADAVLLV 182 >gi|323350996|ref|ZP_08086653.1| ribosome-associated GTPase EngA [Streptococcus sanguinis VMC66] gi|322122720|gb|EFX94429.1| ribosome-associated GTPase EngA [Streptococcus sanguinis VMC66] Length = 436 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 74/148 (50%), Gaps = 31/148 (20%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRE 279 K ++G N GKSSL NA+ ++ I + + GTTRD + T+ D EG + DTAG+R+ Sbjct: 176 KFSLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAIDTVFTDSEGQEFTMIDTAGMRK 235 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336 + + EK + R ++ +D++L++ +N+++ I Sbjct: 236 SGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEGI---------------------- 271 Query: 337 EEYDHLISSF---TGEGLEELINKIKSI 361 EYD I+ F G+G+ ++NK ++ Sbjct: 272 REYDKRIAGFAHEAGKGIVIVVNKWDTL 299 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS+LFN +A + ++IV D+ G TRD + + I DT GI + D Sbjct: 6 IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATANWLNRKFSIIDTGGIDDVD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + + ++ AD+I+ + Sbjct: 66 APFMEQIKHQAEIAMDEADVIVFV 89 >gi|29833066|ref|NP_827700.1| GTP-binding protein EngA [Streptomyces avermitilis MA-4680] gi|37999529|sp|Q828Y7|DER_STRAW RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|29610188|dbj|BAC74235.1| putative GTP-binding protein [Streptomyces avermitilis MA-4680] Length = 491 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 29/68 (42%), Positives = 40/68 (58%) Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 G I +I ++G N GKSSL N +A +D +V +I GTTRD + ++L G K Sbjct: 220 FGAAIGGPRRIALIGRPNVGKSSLLNKVAGEDRVVVNEIAGTTRDPVDELIELGGVTWKF 279 Query: 272 SDTAGIRE 279 DTAGIR+ Sbjct: 280 VDTAGIRK 287 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/84 (28%), Positives = 43/84 (51%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+L N + + A+V D PG TRD +T + + G K+ DT G + Sbjct: 55 LAVVGRPNVGKSTLVNRIIGRREAVVEDKPGVTRDRVTYEAEWAGRRFKLVDTGGWEQDV 114 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + +E AD ++ + Sbjct: 115 LGIDASVAAQAEYAIEAADAVVFV 138 >gi|188590462|ref|YP_001922641.1| GTP-binding protein [Clostridium botulinum E3 str. Alaska E43] gi|188500743|gb|ACD53879.1| GTP-binding protein [Clostridium botulinum E3 str. Alaska E43] Length = 397 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/128 (35%), Positives = 67/128 (52%), Gaps = 8/128 (6%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276 N I I G NAGKSSL NAL + +++V+D PGTT D ++ ++L V I DTAG Sbjct: 8 NRLHISIFGKRNAGKSSLINALTNQPLSLVSDTPGTTTDPVSKAMELLPLGPVVIIDTAG 67 Query: 277 IRETDDI--VEKEGIKRTFLEVENADLILLLKEINSKKEISF-----PKNIDFIFIGTKS 329 + +T D+ + E K L+ + A L+ ++ N + E + KNI I + K Sbjct: 68 LDDTGDLGTLRVEKTKEVMLKTDLAVLVFSAEDNNIENEKEWFKDLKQKNIPVIGVINKI 127 Query: 330 DLYSTYTE 337 DL + E Sbjct: 128 DLGMSNLE 135 >gi|254476934|ref|ZP_05090320.1| small GTP-binding protein domain [Ruegeria sp. R11] gi|214031177|gb|EEB72012.1| small GTP-binding protein domain [Ruegeria sp. R11] Length = 488 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 1/87 (1%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 + + I+G N GKS+LFN L K +A+V D PG TRD+ + L + DTAG+ E Sbjct: 3 FTLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGEARLGDLRFTVVDTAGLEE 62 Query: 280 -TDDIVEKEGIKRTFLEVENADLILLL 305 TD+ +E + T V+ AD+ L + Sbjct: 63 ATDNSLEGRMRRLTERAVDMADVCLFM 89 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 41/66 (62%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ ++G NAGKS+L N + +D + G TRD +++ +D +G +++ DTAG+R+ Sbjct: 203 QVAVVGRPNAGKSTLINKILGEDRLLTGPEAGITRDAISLQIDWQGVPMRVFDTAGMRKK 262 Query: 281 DDIVEK 286 + EK Sbjct: 263 AKVQEK 268 >gi|157150518|ref|YP_001449828.1| GTP-binding protein EngA [Streptococcus gordonii str. Challis substr. CH1] gi|189037167|sp|A8AVL8|DER_STRGC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|157075312|gb|ABV09995.1| GTP-binding protein engA [Streptococcus gordonii str. Challis substr. CH1] Length = 436 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 74/148 (50%), Gaps = 31/148 (20%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRE 279 K ++G N GKSSL NA+ ++ I + + GTTRD + T+ D EG + DTAG+R+ Sbjct: 176 KFSLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAIDTVFTDSEGQEFTMIDTAGMRK 235 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336 + + EK + R ++ +D++L++ +N+++ I Sbjct: 236 SGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEGI---------------------- 271 Query: 337 EEYDHLISSF---TGEGLEELINKIKSI 361 EYD I+ F G+G+ ++NK ++ Sbjct: 272 REYDKRIAGFAHEAGKGIVIVVNKWDTL 299 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS+LFN +A + ++IV D+ G TRD + D I DT GI + D Sbjct: 6 IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATADWLNRKFSIIDTGGIDDVD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + + ++ AD+I+ + Sbjct: 66 APFMEQIKHQAEIAMDEADVIVFV 89 >gi|116618390|ref|YP_818761.1| GTPase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|122271410|sp|Q03WN4|DER_LEUMM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|116097237|gb|ABJ62388.1| Predicted GTPase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 436 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN +A + +AIV D+PG TRD L + Y ++ DT GI D Sbjct: 6 VAIVGRPNVGKSTIFNRMAGERIAIVEDMPGVTRDRLYAPAEWLNYEFRMIDTGGIEIGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 E + L + AD+I+++ Sbjct: 66 APFLAEIRGQVELAINEADVIVMV 89 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 32/86 (37%), Positives = 51/86 (59%), Gaps = 4/86 (4%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRETDD 282 I+G N GKSS+ NA+ + IV+DI GTTRD + T + EG + DTAG+R+ Sbjct: 179 IIGRPNVGKSSIVNAMLGEKRVIVSDIEGTTRDAIDTRFVTEEGDEFVMVDTAGMRKRGK 238 Query: 283 I---VEKEGIKRTFLEVENADLILLL 305 I EK + R ++++++IL++ Sbjct: 239 IYENTEKYSVMRAMKAIDDSNVILMV 264 >gi|26553682|ref|NP_757616.1| GTP-binding protein EngA [Mycoplasma penetrans HF-2] gi|37999697|sp|Q8EWH6|DER_MYCPE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|26453688|dbj|BAC44020.1| predicted ATP/GTP-binding protein [Mycoplasma penetrans HF-2] Length = 444 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/142 (31%), Positives = 69/142 (48%), Gaps = 12/142 (8%) Query: 202 DISSHISQGKLGEIIR-NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260 D+ I KL EI + +K I+G N GKSSL N + +D I ++I TTRD + Sbjct: 154 DLLDAIVDTKLKEIKEEDTFKFCIIGRPNVGKSSLVNCILNEDRMITSNIANTTRDAIDS 213 Query: 261 DLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL----KEINSKKE 313 + + L I DTAGIR I V+K R + ++LI+++ +E N + E Sbjct: 214 NFKKDNLLYTIIDTAGIRRKGKIQENVDKYAYLRVEQSISRSNLIVIVLDGSEEFNEQDE 273 Query: 314 I----SFPKNIDFIFIGTKSDL 331 + + NI I + K D+ Sbjct: 274 VIAGLAHKANIPSIIVVNKWDI 295 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 34/57 (59%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 K+ I+G N GKS+LFN + K + +IV D PG TRD + + + K+ DT G+ Sbjct: 3 KVAIVGKPNVGKSTLFNRIIKVNKSIVDDKPGITRDRIYANAEWLTQHFKLIDTGGL 59 >gi|324993642|gb|EGC25561.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK405] gi|324995046|gb|EGC26959.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK678] gi|327462911|gb|EGF09232.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK1] Length = 436 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 74/148 (50%), Gaps = 31/148 (20%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRE 279 K ++G N GKSSL NA+ ++ I + + GTTRD + T+ D EG + DTAG+R+ Sbjct: 176 KFSLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAIDTVFTDSEGQEFTMIDTAGMRK 235 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336 + + EK + R ++ +D++L++ +N+++ I Sbjct: 236 SGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEGI---------------------- 271 Query: 337 EEYDHLISSF---TGEGLEELINKIKSI 361 EYD I+ F G+G+ ++NK ++ Sbjct: 272 REYDKRIAGFAHEAGKGIVIVVNKWDTL 299 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 45/84 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS+LFN +A + ++IV D+ G TRD + I DT GI + D Sbjct: 6 IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATASWLNRKFSIIDTGGIDDVD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + + ++ AD+I+ + Sbjct: 66 APFMEQIKHQAEIAMDEADVIVFV 89 >gi|222152562|ref|YP_002561737.1| GTP-binding protein EngA [Streptococcus uberis 0140J] gi|254783170|sp|B9DTQ3|DER_STRU0 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|222113373|emb|CAR41004.1| GTP-binding protein EngA [Streptococcus uberis 0140J] Length = 436 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 73/151 (48%), Gaps = 31/151 (20%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKIS 272 EI N + ++G N GKSSL NA+ ++ I + + GTTRD + D +G + Sbjct: 169 EINDNTIRFSLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAIDTHFTDQDGQEYNMI 228 Query: 273 DTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKS 329 DTAG+R++ + EK + R ++ +D++LL+ IN+++ I Sbjct: 229 DTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLLV--INAEEGI--------------- 271 Query: 330 DLYSTYTEEYDHLISSF---TGEGLEELINK 357 EYD I+ F G+G+ ++NK Sbjct: 272 -------REYDKRIAGFAHEAGKGMIIVVNK 295 Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN +A + ++IV D+ G TRD + + + DT GI + D Sbjct: 6 VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRKFSLIDTGGIDDVD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + + ++ AD+I+ + Sbjct: 66 APFMEQIKHQAQIAMDEADVIVFV 89 >gi|162149029|ref|YP_001603490.1| GTP-binding protein EngA [Gluconacetobacter diazotrophicus PAl 5] gi|161787606|emb|CAP57202.1| GTP-binding protein [Gluconacetobacter diazotrophicus PAl 5] Length = 479 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 35/59 (59%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +VI G N GKS+LFN L + A+V D PG TRD + + G V++ DTAG+ E Sbjct: 16 VVIAGRPNVGKSTLFNRLVGRRQALVADTPGVTRDRKEAETVMRGRRVRLVDTAGLEEA 74 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 3/87 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G NAGKS+L N L ++ I PG TRD +T+ L E +++ DTAG+R Sbjct: 212 RLAIVGRPNAGKSTLLNRLLGEERMITGPEPGLTRDSVTVLLHDEHGPIQLVDTAGLRRR 271 Query: 281 DDI---VEKEGIKRTFLEVENADLILL 304 I +EK + T ++ A++++L Sbjct: 272 GRIEESLEKMSVSATIEALKMAEVVVL 298 >gi|325294622|ref|YP_004281136.1| GTP-binding proten HflX [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065070|gb|ADY73077.1| GTP-binding proten HflX [Desulfurobacterium thermolithotrophum DSM 11699] Length = 357 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 40/98 (40%), Positives = 60/98 (61%), Gaps = 5/98 (5%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 +N I ++G++N GKS+L AL KKDV + +IP T DV T L LE V ISDT G Sbjct: 184 KNFITIAVVGYTNVGKSTLVKALTKKDV-FIKNIPFATLDVKTGSLYLEDKKVLISDTVG 242 Query: 277 -IRE-TDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312 IR +++ K T EV+ +D++L++ +++SKK Sbjct: 243 FIRNLPHELI--ASFKATLGEVKESDILLIVFDVSSKK 278 >gi|228475961|ref|ZP_04060669.1| ribosome-associated GTPase EngA [Staphylococcus hominis SK119] gi|314936392|ref|ZP_07843739.1| ribosome-associated GTPase EngA [Staphylococcus hominis subsp. hominis C80] gi|228269784|gb|EEK11264.1| ribosome-associated GTPase EngA [Staphylococcus hominis SK119] gi|313655011|gb|EFS18756.1| ribosome-associated GTPase EngA [Staphylococcus hominis subsp. hominis C80] Length = 436 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSL NA+ ++ IV+++ GTTRD + + +G + DTAG+R+ Sbjct: 177 RLSIIGRPNVGKSSLVNAILGEERVIVSNVAGTTRDAVDTEYSYDGQDYVLIDTAGMRKK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + EK + R +E ++++LL+ Sbjct: 237 GKVYESTEKYSVLRALKAIERSNVVLLV 264 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 45/84 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN + + V+IV D PG TRD + + + I DT GI D Sbjct: 6 VAIVGRPNVGKSTIFNRVVGERVSIVEDTPGVTRDRIYSSGEWLTHEFNIIDTGGIEIGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + + + ++ AD+I+ + Sbjct: 66 APFQTQIRAQAEIAIDEADVIIFM 89 >gi|212696573|ref|ZP_03304701.1| hypothetical protein ANHYDRO_01111 [Anaerococcus hydrogenalis DSM 7454] gi|212676429|gb|EEB36036.1| hypothetical protein ANHYDRO_01111 [Anaerococcus hydrogenalis DSM 7454] Length = 325 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 39/114 (34%), Positives = 64/114 (56%), Gaps = 5/114 (4%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280 + +LG +N+GKSS N ++ +DV+IV+ GTT D + +++ + V DTAG + Sbjct: 11 LALLGKTNSGKSSFLNFISDQDVSIVSSQKGTTTDPIKKSMEIHDFGPVLFFDTAGFDDN 70 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP---KNIDFIFIGTKSDL 331 ++ EK I++T VE +D++L I+ K E + K IFI +K DL Sbjct: 71 TNLYEKR-IEKTKKAVEKSDILLYFLSIDDKIEEIYALKEKYKKIIFIASKQDL 123 >gi|325696369|gb|EGD38260.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK160] Length = 436 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 74/148 (50%), Gaps = 31/148 (20%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRE 279 K ++G N GKSSL NA+ ++ I + + GTTRD + T+ D EG + DTAG+R+ Sbjct: 176 KFSLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAIDTVFTDSEGQEFTMIDTAGMRK 235 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336 + + EK + R ++ +D++L++ +N+++ I Sbjct: 236 SGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEGI---------------------- 271 Query: 337 EEYDHLISSF---TGEGLEELINKIKSI 361 EYD I+ F G+G+ ++NK ++ Sbjct: 272 REYDKRIAGFAHEAGKGMIIVVNKWDTL 299 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 45/84 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS+LFN +A + ++IV D+ G TRD + I DT GI + D Sbjct: 6 IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATASWLNRKFSIIDTGGIDDVD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + + ++ AD+I+ + Sbjct: 66 APFMEQIKHQAEIAMDEADVIVFV 89 >gi|324991285|gb|EGC23218.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK353] Length = 436 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 74/148 (50%), Gaps = 31/148 (20%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRE 279 K ++G N GKSSL NA+ ++ I + + GTTRD + T+ D EG + DTAG+R+ Sbjct: 176 KFSLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAIDTVFTDSEGQEFTMIDTAGMRK 235 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336 + + EK + R ++ +D++L++ +N+++ I Sbjct: 236 SGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEGI---------------------- 271 Query: 337 EEYDHLISSF---TGEGLEELINKIKSI 361 EYD I+ F G+G+ ++NK ++ Sbjct: 272 REYDKRIAGFAHEAGKGMIIVVNKWDTL 299 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS+LFN +A + ++IV D+ G TRD + + I DT GI + D Sbjct: 6 IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATANWLNRKFSIIDTGGIDDVD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + + ++ AD+I+ + Sbjct: 66 APFMEQIKHQAEIAMDEADVIVFV 89 >gi|300173424|ref|YP_003772590.1| GTP-binding protein EngA [Leuconostoc gasicomitatum LMG 18811] gi|299887803|emb|CBL91771.1| GTP-binding protein EngA [Leuconostoc gasicomitatum LMG 18811] Length = 437 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN +A + +AIV D PG TRD L + Y ++ DT GI D Sbjct: 6 VAIVGRPNVGKSTIFNRMAGERIAIVEDQPGVTRDRLYAPAEWLNYEFRMIDTGGIELGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 E + L ++ AD+I+++ Sbjct: 66 APFLAEIRAQVELAIDEADVIVMI 89 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 4/89 (4%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID-LDLEGYLVKISDTAGIRE 279 K I+G N GKSS+ NA+ +D IV+ I GTTRD + + EG + DTAG+R+ Sbjct: 177 KFSIIGRPNVGKSSIVNAMLGEDRVIVSSIEGTTRDAIDSRFVTPEGDEFIMVDTAGMRK 236 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLL 305 + EK + R ++N+++IL++ Sbjct: 237 RGKVYENTEKYSVMRALKAIDNSNVILMV 265 >gi|327474514|gb|EGF19919.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK408] Length = 436 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 74/148 (50%), Gaps = 31/148 (20%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRE 279 K ++G N GKSSL NA+ ++ I + + GTTRD + T+ D EG + DTAG+R+ Sbjct: 176 KFSLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAIDTVFTDSEGQEFTMIDTAGMRK 235 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336 + + EK + R ++ +D++L++ +N+++ I Sbjct: 236 SGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEGI---------------------- 271 Query: 337 EEYDHLISSF---TGEGLEELINKIKSI 361 EYD I+ F G+G+ ++NK ++ Sbjct: 272 REYDKRIAGFAHEAGKGIVIVVNKWDTL 299 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 45/84 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS+LFN +A + ++IV D+ G TRD + I DT GI + D Sbjct: 6 IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATASWLNRKFSIIDTGGIDDVD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + + ++ AD+I+ + Sbjct: 66 APFMEQIKHQAEIAMDEADVIVFV 89 >gi|67921883|ref|ZP_00515399.1| Small GTP-binding protein domain [Crocosphaera watsonii WH 8501] gi|67856099|gb|EAM51342.1| Small GTP-binding protein domain [Crocosphaera watsonii WH 8501] Length = 533 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 68/230 (29%), Positives = 111/230 (48%), Gaps = 30/230 (13%) Query: 201 NDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260 +I+ ++++G+L K+VI G +AGK+SL NAL V V GTT+ T Sbjct: 120 QEITDNLNRGEL--------KVVIFGTGSAGKTSLVNALFGDIVGDVEATMGTTKIGETY 171 Query: 261 DLDLEGYL--VKISDTAGIRETD-DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP 317 L L+G + I+DT GI E + E+E + R ADL+L + + + ++ P Sbjct: 172 SLKLKGISREILITDTPGILEAGIEGSERETLARQL--ATEADLLLFVVDNDLRQSEYNP 229 Query: 318 KNIDFIFIGTKSDL----YSTYTEEYDHLISSFTGEGLEELINKIKSILSNK----FKKL 369 I + +G +S L YTEE ++ I LE+L ++KSI++ K Sbjct: 230 LEI-LVNLGKRSLLIFNKIDLYTEEEENQI-------LEQLKERVKSIIAEKDVISLSAK 281 Query: 370 PFSIPSHK-RHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGK 418 P SI S + + L ++ + + G D+IA+N+ L S LG+ Sbjct: 282 PQSITSQNGKKVQPLPNITPLIKRLAAILRAEGEDLIADNILLQSQRLGE 331 >gi|326385799|ref|ZP_08207428.1| GTP-binding protein EngA [Novosphingobium nitrogenifigens DSM 19370] gi|326209778|gb|EGD60566.1| GTP-binding protein EngA [Novosphingobium nitrogenifigens DSM 19370] Length = 454 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 29/60 (48%), Positives = 36/60 (60%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 +VI+G N GKS+LFN L K +A+V D PG TRD D +L G I DTAG + D Sbjct: 4 VVIIGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDRRFGDAELLGLAFTIVDTAGWEDDD 63 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 6/72 (8%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL------EGYLVKISDT 274 K+ ++G NAGKS+L N L +D + G TRD + +D + E +++ DT Sbjct: 185 KLAVVGRPNAGKSTLINRLLGEDRLLTGPEAGITRDSIAVDWEWRDPATGESRPIRLIDT 244 Query: 275 AGIRETDDIVEK 286 AG+R+ +V+K Sbjct: 245 AGMRKKAQVVDK 256 >gi|332652769|ref|ZP_08418514.1| ribosome-associated GTPase EngA [Ruminococcaceae bacterium D16] gi|332517915|gb|EGJ47518.1| ribosome-associated GTPase EngA [Ruminococcaceae bacterium D16] Length = 441 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 K+ I+G N GKSSL N + ++ IV+++ GTTRD + + E DTAG+R Sbjct: 178 KVAIIGKPNVGKSSLVNRILGQERVIVSNMAGTTRDAVDSVFENEKGKFLFIDTAGMRKK 237 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305 + DD +EK + R + +E +D+ L+L Sbjct: 238 SKVDDRIEKFSVLRATMAIERSDVCLIL 265 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 1/90 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280 + I+G N GKS LFN L + ++IV D PG TRD L + I DT GI T Sbjct: 5 VAIVGRPNVGKSMLFNKLCGQRLSIVEDTPGVTRDRLYAQCEWRNRTFDIVDTGGIEPGT 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310 DD + ++ + + A +I+ + ++ + Sbjct: 65 DDQILSFMREQAEIAISTATVIVFVCDVKT 94 >gi|312114899|ref|YP_004012495.1| ribosome-associated GTPase EngA [Rhodomicrobium vannielii ATCC 17100] gi|311220028|gb|ADP71396.1| ribosome-associated GTPase EngA [Rhodomicrobium vannielii ATCC 17100] Length = 464 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 57/98 (58%), Gaps = 3/98 (3%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 Y + I+G N GKS+LFN LA + +A+V D+PG TRD + + V ++DTAG+ Sbjct: 2 AYTVAIIGRPNVGKSTLFNRLAGRRLALVDDLPGLTRDRKETQIRINRRDVVLTDTAGLE 61 Query: 279 ETDD-IVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + + + +++ + +DLIL + I+++ E++ Sbjct: 62 DAEPGSIAARMREQSEQAIAESDLILFV--IDARAELT 97 Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 33/58 (56%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 K+ I G NAGKS+L NAL ++ I G TRD + D G V++ DTAG+R Sbjct: 192 KLAIAGRPNAGKSTLVNALLGEERMITGPEAGLTRDAIAADFQWRGRKVRLYDTAGLR 249 >gi|326692494|ref|ZP_08229499.1| GTP-binding protein Der [Leuconostoc argentinum KCTC 3773] Length = 437 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN +A + +AIV D PG TRD L + Y ++ DT GI D Sbjct: 6 VAIVGRPNVGKSTIFNRMAGERIAIVEDQPGVTRDRLYAPAEWLNYEFRMIDTGGIELGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + E + L ++ AD+I+++ Sbjct: 66 EPFLAEIRAQVELALDEADVIVMV 89 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/86 (34%), Positives = 52/86 (60%), Gaps = 4/86 (4%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRETDD 282 I+G N GKSS+ NA+ ++ IV+DI GTTRD + T + EG + DTAG+R+ Sbjct: 180 IIGRPNVGKSSIVNAILGEERVIVSDIEGTTRDAIDTRFVTPEGDEFIMVDTAGMRKRGK 239 Query: 283 I---VEKEGIKRTFLEVENADLILLL 305 + EK + R +++++++L++ Sbjct: 240 VYENTEKYSVMRALKAIDDSNVVLMV 265 >gi|325695118|gb|EGD37020.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK150] Length = 436 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 74/148 (50%), Gaps = 31/148 (20%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRE 279 K ++G N GKSSL NA+ ++ I + + GTTRD + T+ D EG + DTAG+R+ Sbjct: 176 KFSLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAIDTVFTDSEGQEFTMIDTAGMRK 235 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336 + + EK + R ++ +D++L++ +N+++ I Sbjct: 236 SGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEGI---------------------- 271 Query: 337 EEYDHLISSF---TGEGLEELINKIKSI 361 EYD I+ F G+G+ ++NK ++ Sbjct: 272 REYDKRIAGFAHEAGKGIVIVVNKWDTL 299 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS+LFN +A + ++IV D+ G TRD + + I DT GI + D Sbjct: 6 IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATANWLNRKFSIIDTGGIDDVD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + + ++ AD+I+ + Sbjct: 66 APFMEQIKHQAEIAMDEADVIVFV 89 >gi|325687138|gb|EGD29161.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK72] Length = 436 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 74/148 (50%), Gaps = 31/148 (20%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRE 279 K ++G N GKSSL NA+ ++ I + + GTTRD + T+ D EG + DTAG+R+ Sbjct: 176 KFSLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAIDTVFTDSEGQEFTMIDTAGMRK 235 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336 + + EK + R ++ +D++L++ +N+++ I Sbjct: 236 SGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEGI---------------------- 271 Query: 337 EEYDHLISSF---TGEGLEELINKIKSI 361 EYD I+ F G+G+ ++NK ++ Sbjct: 272 REYDKRIAGFAHEAGKGIVIVVNKWDTL 299 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS+LFN +A + ++IV D+ G TRD + + I DT GI + D Sbjct: 6 IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATANWLNRKFSIIDTGGIDDVD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + + ++ AD+I+ + Sbjct: 66 APFMEQIKHQAEIAMDEADVIVFV 89 >gi|254487934|ref|ZP_05101139.1| GTP-binding protein [Roseobacter sp. GAI101] gi|214044803|gb|EEB85441.1| GTP-binding protein [Roseobacter sp. GAI101] Length = 491 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 1/87 (1%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 + + I+G N GKS+LFN L K +A+V D PG TRD+ L + DTAG+ E Sbjct: 3 FTLAIVGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDLREGAARLADLRFTVIDTAGLEE 62 Query: 280 -TDDIVEKEGIKRTFLEVENADLILLL 305 TDD ++ + T V+ AD+ L + Sbjct: 63 VTDDSLQGRMRRLTERAVDMADICLFM 89 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 39/66 (59%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ ++G NAGKS+L N + +D + G TRD +++ EG ++I DTAG+R+ Sbjct: 205 QVAVVGRPNAGKSTLINQIMGEDRLLTGPEAGITRDAISLRTVWEGVPMRIFDTAGMRKK 264 Query: 281 DDIVEK 286 I EK Sbjct: 265 AKIQEK 270 >gi|188586247|ref|YP_001917792.1| small GTP-binding protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|226741142|sp|B2A4M9|DER_NATTJ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|179350934|gb|ACB85204.1| small GTP-binding protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 440 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 53/88 (60%), Gaps = 3/88 (3%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET--- 280 ++G N GKSSL N + K+ IV+++PGTTRD + ++ E DTAG+R+ Sbjct: 182 VIGRPNVGKSSLINKILNKERLIVSNMPGTTRDAIDTVIEREDQKYVFIDTAGLRKKSKI 241 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308 D+ +EK + R+ +E +++ LLL ++ Sbjct: 242 DERLEKYSVIRSIKGMERSNIALLLIDV 269 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 50/84 (59%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN + + ++IV D PG TRD + + G+ + DT GI + + Sbjct: 7 VALVGRPNVGKSALFNRIVGQRISIVDDTPGVTRDRIDGKGEWSGHSFNLIDTGGIFDEE 66 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 D + K+ + + + ++ AD+I+ + Sbjct: 67 DDILKQVVIQAEVAIDEADVIVFV 90 >gi|257068697|ref|YP_003154952.1| cytidylate kinase [Brachybacterium faecium DSM 4810] gi|256559515|gb|ACU85362.1| cytidylate kinase [Brachybacterium faecium DSM 4810] Length = 755 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 51/179 (28%), Positives = 81/179 (45%), Gaps = 31/179 (17%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ ++G N GKSSL N LA + +V DI GTTRD + + L G DTAGIR Sbjct: 496 RVALVGRPNVGKSSLLNRLAGEQRVVVDDIAGTTRDPVDEKISLGGKDWTFVDTAGIRRR 555 Query: 281 DDIVEKEGIK-----RTFLEVENADLILLLKEINSKKEISFPKNIDFIFIG--------T 327 +++ +G RT ++ A++ ++L E + K ID + Sbjct: 556 --VLQSQGADYYASLRTRAALDRAEVAVVLLEASEPLSTQDLKIIDMVLESGRALVLAFN 613 Query: 328 KSDLYS-------TYTEEYD--HL-------ISSFTGEGLEELINKIKSILSNKFKKLP 370 K DL Y E D H+ IS+ TG E+L+ I++ L + +++P Sbjct: 614 KWDLIDEERRRALEYEIERDLGHVAWAPRVNISAETGRHAEKLVPAIETALESWDRRIP 672 Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust. Identities = 36/175 (20%), Positives = 72/175 (41%), Gaps = 17/175 (9%) Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269 G + RN + ++G N GKS+L N + + A+V D PG TRD + + + G Sbjct: 312 GPRAAVQRNLPVVAVVGRPNVGKSTLVNRILGRREAVVEDRPGVTRDRVFYEAEWTGKDF 371 Query: 270 KISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NID 321 + DT G + + ++ + V AD++L + + N + + N+ Sbjct: 372 WLVDTGGWEDRVQGIAYRVAEQAEVAVSLADVVLFIVDANVGVTTTDEQLLKVLRKANVP 431 Query: 322 FIFIGTKSDLYSTYTEEY---------DHLISSFTGEGLEELINKIKSILSNKFK 367 + + K D E H +S+ G G +L++ + + + + + Sbjct: 432 IVLVANKVDDQRGELEAAALWNLGLGEPHAVSALHGRGSGDLLDAVVAAMPEEGR 486 >gi|226312035|ref|YP_002771929.1| GTP-binding protein EngA [Brevibacillus brevis NBRC 100599] gi|254783139|sp|C0ZCB6|DER_BREBN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|226094983|dbj|BAH43425.1| GTP-binding protein EngA [Brevibacillus brevis NBRC 100599] Length = 437 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/88 (31%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSL NA+ ++ IV+++ GTTRD + + + + DTAG+R+ Sbjct: 178 RVSIIGRPNVGKSSLTNAILGEERVIVSEVAGTTRDAIDTPFERDDQSYVLVDTAGMRKR 237 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + EK + R +E++D++L++ Sbjct: 238 GKVYETTEKYSVMRAMRSIEDSDVVLVV 265 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--E 279 + I+G N GKS++FN L + VAIV D+PG TRD L + + + DT GI E Sbjct: 6 VAIVGRPNVGKSTIFNRLIGERVAIVEDMPGVTRDRLYGKGEWLTHTFHVIDTGGIEFGE 65 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKE 307 TD+I+ + + L ++ AD+I+++ + Sbjct: 66 TDEILTQMRYQAE-LAIDEADVIIMIAD 92 >gi|125718602|ref|YP_001035735.1| GTP-binding protein EngA [Streptococcus sanguinis SK36] gi|166225867|sp|A3CPT0|DER_STRSV RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|125498519|gb|ABN45185.1| GTP-binding protein, putative [Streptococcus sanguinis SK36] Length = 436 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 74/148 (50%), Gaps = 31/148 (20%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRE 279 K ++G N GKSSL NA+ ++ I + + GTTRD + T+ D EG + DTAG+R+ Sbjct: 176 KFSLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAIDTVFTDSEGQEFTMIDTAGMRK 235 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336 + + EK + R ++ +D++L++ +N+++ I Sbjct: 236 SGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEGI---------------------- 271 Query: 337 EEYDHLISSF---TGEGLEELINKIKSI 361 EYD I+ F G+G+ ++NK ++ Sbjct: 272 REYDKRIAGFAHEAGKGIVIVVNKWDTL 299 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS+LFN +A + ++IV D+ G TRD + + I DT GI + D Sbjct: 6 IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATANWLNRKFSIIDTGGIDDVD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + + ++ AD+I+ + Sbjct: 66 APFMEQIKHQAEIAMDEADVIVFV 89 >gi|313206833|ref|YP_004046010.1| ribosome-associated GTPase enga [Riemerella anatipestifer DSM 15868] gi|312446149|gb|ADQ82504.1| ribosome-associated GTPase EngA [Riemerella anatipestifer DSM 15868] gi|315023907|gb|EFT36909.1| GTP-binding protein EngA [Riemerella anatipestifer RA-YM] gi|325335727|gb|ADZ12001.1| Predicted GTPase [Riemerella anatipestifer RA-GD] Length = 435 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I I G N GKS+L NAL IVTDI GTTRD + + G+ + DTAG+R+ Sbjct: 177 RITIAGRPNVGKSTLTNALLDNKRNIVTDIAGTTRDSIETIYNKFGHEFVLVDTAGMRKK 236 Query: 281 DDIVEK---EGIKRTFLEVENADLILLL 305 + E + R+ +E++D+++++ Sbjct: 237 SKVSENLEFYSVMRSVRAIEHSDVVVIM 264 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFN L ++ AIV + G TRD + G + DT G T Sbjct: 5 VAIVGRPNVGKSTLFNRLLERREAIVDSVAGVTRDRHYGKSEWNGVEFTVIDTGGYDVGT 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 DDI E+E + L V+ A I+ + Sbjct: 65 DDIFEEEIRHQVQLAVDEATSIIFM 89 >gi|110633049|ref|YP_673257.1| GTP-binding protein EngA [Mesorhizobium sp. BNC1] gi|123162694|sp|Q11KI3|DER_MESSB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|110284033|gb|ABG62092.1| small GTP-binding protein [Chelativorans sp. BNC1] Length = 470 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 42/157 (26%), Positives = 71/157 (45%), Gaps = 18/157 (11%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 +K+ I+G N GKS+LFN L + +A+V D PG TRD L + DTAG+ E Sbjct: 3 FKVAIVGRPNVGKSTLFNRLVGRRIALVDDTPGVTRDRRVHSARLLDLRFDVIDTAGLEE 62 Query: 280 TDDIVEKEGIK-RTFLEVENADLIL--------LLKEINSKKEISFPKNIDFIFIGTKSD 330 ++ +T ++ ADL+L L+ + + E+ K + + K+D Sbjct: 63 AAAPTLAGRMRAQTETAIDEADLVLFMIDARAGLMPDDRAFAEVVRRKGKPVVLVANKTD 122 Query: 331 LYSTYTEEYDHL---------ISSFTGEGLEELINKI 358 + T + +S+ G+G+ EL + I Sbjct: 123 VRGTDAGVLEAFALGLGDPVAVSAEHGQGMVELRDAI 159 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 38/66 (57%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I ++G N GKS+L NAL ++ + G TRD +++D G +K+ DTAG+R Sbjct: 200 RIAVVGRPNVGKSTLINALIGEERLLTGPEAGITRDSISVDWHWRGREIKLFDTAGMRRK 259 Query: 281 DDIVEK 286 + EK Sbjct: 260 ARVQEK 265 >gi|315452739|ref|YP_004073009.1| GTP-binding protein engA [Helicobacter felis ATCC 49179] gi|315131791|emb|CBY82419.1| GTP-binding protein engA [Helicobacter felis ATCC 49179] Length = 435 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 30/91 (32%), Positives = 55/91 (60%), Gaps = 2/91 (2%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSL NAL +++ A+V+++ GTT D + + G + DTAG+R+ Sbjct: 178 QVGIIGRVNVGKSSLLNALVQQERALVSEVAGTTIDPVDQHISHHGQEICFVDTAGLRQR 237 Query: 281 DDI--VEKEGIKRTFLEVENADLILLLKEIN 309 I +EK + RT +E + + +L+ +++ Sbjct: 238 SKIQGLEKYALDRTTKVLEQSQIAILVLDVS 268 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 1/84 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKSSLFN L K AI + GTTRD+ + L G V++ DT G+ + Sbjct: 4 IALVGRPNVGKSSLFNCLVKSRQAITSAFAGTTRDIRQGVVSLGGVFVQLLDTGGL-DPG 62 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + K + ++ DL+ + Sbjct: 63 HALGTQITKHSLETIQKCDLVFYV 86 >gi|254796894|ref|YP_003081731.1| putative GTP-binding protein EngA [Neorickettsia risticii str. Illinois] gi|254590130|gb|ACT69492.1| putative GTP-binding protein EngA [Neorickettsia risticii str. Illinois] Length = 480 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 83/161 (51%), Gaps = 18/161 (11%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIR 278 +++ I+G +N GKS+LFN +A++ +I D G TRDV+ + L EG + DTAG Sbjct: 12 FRVSIVGKANVGKSTLFNKMAREKRSITMDRKGVTRDVVVRKISLNEGKSFLLLDTAGFN 71 Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL--KEINSKKEI--SFPK----NIDFIFIGTKSD 330 E ++RT ++ +D+IL + +I+S+ + S+ + N + + KSD Sbjct: 72 PQ----HPETVERTEYAIKESDMILFVIDNKIDSEDMLFASWLRRNAGNSKIVLVCNKSD 127 Query: 331 L-----YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKF 366 S + + LIS+ GL ELI+ I+S + + Sbjct: 128 RKDRDDCSLFGFQNVFLISAEHSLGLSELISYIESFIPEQL 168 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 3/93 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ ILG N GKSSL N KD +V I GTTRD ++ + + ++ DTAG+R+ Sbjct: 182 RVSILGQPNVGKSSLMNKFIGKDRVLVLPIAGTTRDPISDEFQWKCTTFELVDTAGLRKK 241 Query: 281 D---DIVEKEGIKRTFLEVENADLILLLKEINS 310 D +EK R +D+++ + +I++ Sbjct: 242 QRVTDGLEKICNSRALRTSAESDVVIFMCDISN 274 >gi|26249489|ref|NP_755529.1| hypothetical protein c3654 [Escherichia coli CFT073] gi|26109897|gb|AAN82102.1|AE016766_190 Hypothetical protein yeeP [Escherichia coli CFT073] gi|47600677|emb|CAE55799.1| hypothetical protein YeeP [Escherichia coli Nissle 1917] gi|307555015|gb|ADN47790.1| putative GTPase [Escherichia coli ABU 83972] Length = 290 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 41/108 (37%), Positives = 58/108 (53%), Gaps = 4/108 (3%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L +S HI + L ++ R+ I I+G S AGKSSL NAL + +V V+D+ TR+V Sbjct: 17 LPYSLSRHILE-HLRKLTRHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQ 75 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305 L GY + I+D G+ E+ D E E + R L DL+L L Sbjct: 76 RFRLSGHGYSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 121 >gi|209525601|ref|ZP_03274139.1| small GTP-binding protein [Arthrospira maxima CS-328] gi|209493934|gb|EDZ94251.1| small GTP-binding protein [Arthrospira maxima CS-328] Length = 222 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 42/140 (30%), Positives = 64/140 (45%), Gaps = 6/140 (4%) Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 + N + ++G N GKS LFNAL A V++ PGTT D+ T D+ + + I DT Sbjct: 36 VSNKPTVALVGSPNVGKSVLFNALTSH-YATVSNYPGTTVDISTGDMIIGDKAIAIIDTP 94 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFI--GTKSDLYS 333 G+ I E+E + R L DL++ + + + + N+ + G L Sbjct: 95 GMYSLLPITEEEKVGRDLLMTRGIDLVI---HVVNAQHLGRMLNLTLQLLEAGLPVLLAV 151 Query: 334 TYTEEYDHLISSFTGEGLEE 353 +E DHL E LEE Sbjct: 152 NLIDEADHLGIKINAEDLEE 171 >gi|83590125|ref|YP_430134.1| small GTP-binding protein domain-containing protein [Moorella thermoacetica ATCC 39073] gi|83573039|gb|ABC19591.1| iron-only hydrogenase maturation protein HydF [Moorella thermoacetica ATCC 39073] Length = 405 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 38/92 (41%), Positives = 54/92 (58%), Gaps = 8/92 (8%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTA 275 N I I G NAGKSSL NAL +D+A+V+ +PGTT D + +++ G +V I DTA Sbjct: 8 NRLHIAIFGRRNAGKSSLINALTNQDLAVVSSVPGTTTDPVMKSMEILPLGPVVLI-DTA 66 Query: 276 GIRETDDIVE--KEGIKRTFLEVENADLILLL 305 GI DD+ E +K+T + DL +L+ Sbjct: 67 GI---DDVGELGTLRVKKTMEVLRRTDLAILV 95 >gi|92114975|ref|YP_574903.1| small GTP-binding protein protein [Chromohalobacter salexigens DSM 3043] gi|123387342|sp|Q1QTK4|DER_CHRSD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|91798065|gb|ABE60204.1| Small GTP-binding protein protein [Chromohalobacter salexigens DSM 3043] Length = 467 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 27/68 (39%), Positives = 39/68 (57%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 NG +I ++G N GKS+L N L +D +V D GTTRD + I + G + DTAG+ Sbjct: 176 NGIRIGVIGRPNVGKSTLVNRLLGEDRVVVYDEAGTTRDAIEIPFERRGKPYVLVDTAGV 235 Query: 278 RETDDIVE 285 R ++ E Sbjct: 236 RRRKNVSE 243 Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L + A+V D PG TRD + L + DT GI + Sbjct: 5 IALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGNGVLGDKTYTVIDTGGISGNE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + ++ +++ L ++ AD++L + Sbjct: 65 EGLDAAMAEQSLLAIDEADIVLFM 88 >gi|302038214|ref|YP_003798536.1| GTP-binding protein Era-like protein [Candidatus Nitrospira defluvii] gi|300606278|emb|CBK42611.1| GTP-binding protein Era homolog [Candidatus Nitrospira defluvii] Length = 294 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 51/90 (56%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G SN GKS+L N L K+ +AIV+D P TTR + +EG + DT G E Sbjct: 6 VAIIGRSNVGKSTLLNRLLKEKIAIVSDKPQTTRTRILGVAHVEGAQIVFLDTPGFHEPH 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK 311 ++ + ++ T ++AD++ ++ E ++ Sbjct: 66 HLLNRRMVRTTLDTFDDADVLYVVVEATAQ 95 >gi|296269475|ref|YP_003652107.1| small GTP-binding protein [Thermobispora bispora DSM 43833] gi|296092262|gb|ADG88214.1| small GTP-binding protein [Thermobispora bispora DSM 43833] Length = 476 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 39/65 (60%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R ++ ++G N GKSSL N +A ++ +V +PGTTRD + ++L G + DTAG Sbjct: 210 RGPRRVALVGRPNVGKSSLLNRMAGEERVLVDPMPGTTRDPVDELIELGGKTYRFVDTAG 269 Query: 277 IRETD 281 IR D Sbjct: 270 IRRRD 274 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 31/55 (56%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 + ++G N GKS+L N + + A+V D+PG TRD + + +G + DT G Sbjct: 41 VAVVGRPNVGKSTLVNRILGRRAAVVEDVPGVTRDRVAYEASWQGRRFTLVDTGG 95 >gi|148255174|ref|YP_001239759.1| GTP-binding protein EngA [Bradyrhizobium sp. BTAi1] gi|166224309|sp|A5EI59|DER_BRASB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|146407347|gb|ABQ35853.1| GTP-binding protein, essential for cell growth [Bradyrhizobium sp. BTAi1] Length = 456 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 42/179 (23%), Positives = 80/179 (44%), Gaps = 29/179 (16%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G NAGKS+L N L ++ + + GTTRD + ++++ +G +I DTAG+R Sbjct: 186 RVAIVGRPNAGKSTLINHLLGEERLLTSPEAGTTRDSIAVEIEYKGRGFRIFDTAGLRRR 245 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI-------------- 323 I +EK + V A++++L+ + ++ E + D I Sbjct: 246 SRIEEKLEKLSVADALRAVRFAEVVVLMMDAQNRFEEQDLRIADLIEREGRALVIAVNKW 305 Query: 324 -FIGTKSDLYSTYTEEYDHL-----------ISSFTGEGLEELINKIKSILSNKFKKLP 370 + +K S + DH +S GEG++ L+ I + +++P Sbjct: 306 DLMESKPGQISALRHDVDHWLPQVSGVPIVAVSGLMGEGIDRLMQAIVESYAVWNRRVP 364 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 34/58 (58%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 + I I+G N GKS+LFN L + +A+V D+PG TRD + L I DTAG+ Sbjct: 3 FTIAIIGRPNVGKSTLFNRLVGQKLALVDDMPGVTRDRREGEAKLGDLQFTIIDTAGL 60 >gi|329946748|ref|ZP_08294160.1| ribosome biogenesis GTPase Der [Actinomyces sp. oral taxon 170 str. F0386] gi|328526559|gb|EGF53572.1| ribosome biogenesis GTPase Der [Actinomyces sp. oral taxon 170 str. F0386] Length = 719 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 69/122 (56%), Gaps = 11/122 (9%) Query: 189 SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVT 248 S EVL+ ++ + ++S+ + G++ +++ ++G N GKSSL N++A ++ +V Sbjct: 431 SGEVLDAVMEVLPEVSAVATAAPEGDL----HRVALVGRPNVGKSSLLNSIAGRERVVVN 486 Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEG-----IKRTFLEVENADLIL 303 + GTTRD + ++L+G DTAGIR + + G + RT ++ A++++ Sbjct: 487 ETAGTTRDPVDEIIELDGRQWVFVDTAGIRRR--VKQSRGADYYAVLRTQGAIDKAEVVV 544 Query: 304 LL 305 +L Sbjct: 545 VL 546 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 37/128 (28%), Positives = 64/128 (50%), Gaps = 3/128 (2%) Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKL--GEIIRNGYKIV-ILGHSNAGKSSLFN 237 EED++ + +E L D + D++ + G L G+ + G ++ ++G N GKS+L N Sbjct: 241 EEDLRARAMREGLGDYELDEEDLALLDADGGLPAGDSVEPGLPVLAVVGRPNVGKSTLVN 300 Query: 238 ALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 + + A+V D PG TRD ++ + G I DT G ++ + + VE Sbjct: 301 RVLGRREAVVQDTPGVTRDRVSYPAEWAGRRFTIVDTGGWEVDVAGLDAAVATQAEVAVE 360 Query: 298 NADLILLL 305 AD +LL+ Sbjct: 361 MADAVLLV 368 >gi|322392688|ref|ZP_08066148.1| ribosome-associated GTPase EngA [Streptococcus peroris ATCC 700780] gi|321144680|gb|EFX40081.1| ribosome-associated GTPase EngA [Streptococcus peroris ATCC 700780] Length = 436 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 43/172 (25%), Positives = 80/172 (46%), Gaps = 44/172 (25%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRE 279 K ++G N GKSSL NA+ +D I + + GTTRD + D +G + DTAG+R+ Sbjct: 176 KFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDADGQEFTMIDTAGMRK 235 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336 + + EK + R ++ +D++L++ +N+++ I Sbjct: 236 SGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEGI---------------------- 271 Query: 337 EEYDHLISSF---TGEGLEELINKIKSI-------------LSNKFKKLPFS 372 EYD I+ F G+G+ ++NK ++ + +F+ LP++ Sbjct: 272 REYDKRIAGFAHEAGKGMIIVVNKWDTLEKDNHTMKNWEDDIREQFQYLPYA 323 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN +A + ++IV D+ G TRD + + + DT GI + D Sbjct: 6 VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRSFSMIDTGGIDDVD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + + +E AD+I+ + Sbjct: 66 APFMEQIKHQAEIAMEEADVIVFV 89 >gi|325571137|ref|ZP_08146709.1| ribosome-associated GTPase EngA [Enterococcus casseliflavus ATCC 12755] gi|325156222|gb|EGC68408.1| ribosome-associated GTPase EngA [Enterococcus casseliflavus ATCC 12755] Length = 436 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 4/89 (4%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRE 279 K ++G N GKSSL NA+ ++ IV+DI GTTRD + E G + DTAG+R+ Sbjct: 176 KFSLIGRPNVGKSSLINAILGEERVIVSDIEGTTRDAIDTHFTSESGQEFTMIDTAGMRK 235 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLL 305 + EK + R +E +D++L++ Sbjct: 236 KGKVYESTEKYSVMRAMRAIERSDVVLMV 264 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS++FN +A + ++IV D PG TRD + + G + DT GI +D Sbjct: 6 IAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYATGEWLGREFSVIDTGGIDLSD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + + + ++ AD+I+ + Sbjct: 66 EPFMDQIKHQAEIAIDEADVIVFI 89 >gi|225021514|ref|ZP_03710706.1| hypothetical protein CORMATOL_01535 [Corynebacterium matruchotii ATCC 33806] gi|224945896|gb|EEG27105.1| hypothetical protein CORMATOL_01535 [Corynebacterium matruchotii ATCC 33806] Length = 484 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 51/89 (57%), Gaps = 6/89 (6%) Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250 +VL++IL S Q + I ++ ++G N GKSSL N +A ++ ++V D+ Sbjct: 201 DVLDEIL------RSFPDQPRQPSITEGPRRVALVGKPNVGKSSLLNKIAGEERSVVDDV 254 Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 GTT D + + L+G+L K DTAG+R+ Sbjct: 255 AGTTVDPVDSLVQLDGHLWKFIDTAGLRK 283 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 41/84 (48%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+L N + A+V D PG TRD ++ D G + DT G Sbjct: 53 VAIVGRPNVGKSTLVNRFLGRREAVVEDFPGVTRDRISYIADWGGQRFWVQDTGGWDPNV 112 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + ++ +E AD+I+++ Sbjct: 113 KGIHGAIARQAETAMETADVIVMV 136 >gi|30019652|ref|NP_831283.1| GTP-binding protein EngA [Bacillus cereus ATCC 14579] gi|30261599|ref|NP_843976.1| GTP-binding protein EngA [Bacillus anthracis str. Ames] gi|47526799|ref|YP_018148.1| GTP-binding protein EngA [Bacillus anthracis str. 'Ames Ancestor'] gi|47565966|ref|ZP_00237004.1| GTP-binding protein, Era/ThdF family [Bacillus cereus G9241] gi|49184431|ref|YP_027683.1| GTP-binding protein EngA [Bacillus anthracis str. Sterne] gi|49477254|ref|YP_035720.1| GTP-binding protein EngA [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52143844|ref|YP_082984.1| GTP-binding protein EngA [Bacillus cereus E33L] gi|65318869|ref|ZP_00391828.1| COG1160: Predicted GTPases [Bacillus anthracis str. A2012] gi|118477058|ref|YP_894209.1| GTP-binding protein EngA [Bacillus thuringiensis str. Al Hakam] gi|165869461|ref|ZP_02214120.1| GTPase family protein [Bacillus anthracis str. A0488] gi|167633435|ref|ZP_02391760.1| GTPase family protein [Bacillus anthracis str. A0442] gi|167639189|ref|ZP_02397462.1| GTPase family protein [Bacillus anthracis str. A0193] gi|170686176|ref|ZP_02877398.1| GTPase family protein [Bacillus anthracis str. A0465] gi|170706475|ref|ZP_02896935.1| GTPase family protein [Bacillus anthracis str. A0389] gi|177650444|ref|ZP_02933411.1| GTPase family protein [Bacillus anthracis str. A0174] gi|190568605|ref|ZP_03021510.1| ribosome-associated GTPase EngA [Bacillus anthracis Tsiankovskii-I] gi|196033560|ref|ZP_03100972.1| ribosome-associated GTPase EngA [Bacillus cereus W] gi|196038987|ref|ZP_03106294.1| ribosome-associated GTPase EngA [Bacillus cereus NVH0597-99] gi|196046647|ref|ZP_03113871.1| ribosome-associated GTPase EngA [Bacillus cereus 03BB108] gi|206970720|ref|ZP_03231672.1| ribosome-associated GTPase EngA [Bacillus cereus AH1134] gi|206974925|ref|ZP_03235840.1| ribosome-associated GTPase EngA [Bacillus cereus H3081.97] gi|217959081|ref|YP_002337629.1| GTP-binding protein EngA [Bacillus cereus AH187] gi|218231181|ref|YP_002366284.1| GTP-binding protein EngA [Bacillus cereus B4264] gi|218902715|ref|YP_002450549.1| ribosome-associated GTPase EngA [Bacillus cereus AH820] gi|222095233|ref|YP_002529293.1| gtp-binding protein enga [Bacillus cereus Q1] gi|225863467|ref|YP_002748845.1| ribosome-associated GTPase EngA [Bacillus cereus 03BB102] gi|227815649|ref|YP_002815658.1| ribosome-associated GTPase EngA [Bacillus anthracis str. CDC 684] gi|228914177|ref|ZP_04077795.1| GTP-binding protein engA [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228920314|ref|ZP_04083661.1| GTP-binding protein engA [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228926634|ref|ZP_04089703.1| GTP-binding protein engA [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228932889|ref|ZP_04095756.1| GTP-binding protein engA [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228945203|ref|ZP_04107559.1| GTP-binding protein engA [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228951980|ref|ZP_04114077.1| GTP-binding protein engA [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228957879|ref|ZP_04119619.1| GTP-binding protein engA [Bacillus thuringiensis serovar pakistani str. T13001] gi|228984682|ref|ZP_04144855.1| GTP-binding protein engA [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229043348|ref|ZP_04191066.1| GTP-binding protein engA [Bacillus cereus AH676] gi|229069156|ref|ZP_04202447.1| GTP-binding protein engA [Bacillus cereus F65185] gi|229078786|ref|ZP_04211339.1| GTP-binding protein engA [Bacillus cereus Rock4-2] gi|229090565|ref|ZP_04221800.1| GTP-binding protein engA [Bacillus cereus Rock3-42] gi|229109059|ref|ZP_04238659.1| GTP-binding protein engA [Bacillus cereus Rock1-15] gi|229121146|ref|ZP_04250383.1| GTP-binding protein engA [Bacillus cereus 95/8201] gi|229126917|ref|ZP_04255928.1| GTP-binding protein engA [Bacillus cereus BDRD-Cer4] gi|229138297|ref|ZP_04266892.1| GTP-binding protein engA [Bacillus cereus BDRD-ST26] gi|229144202|ref|ZP_04272616.1| GTP-binding protein engA [Bacillus cereus BDRD-ST24] gi|229149801|ref|ZP_04278030.1| GTP-binding protein engA [Bacillus cereus m1550] gi|229155169|ref|ZP_04283281.1| GTP-binding protein engA [Bacillus cereus ATCC 4342] gi|229178011|ref|ZP_04305383.1| GTP-binding protein engA [Bacillus cereus 172560W] gi|229183798|ref|ZP_04311015.1| GTP-binding protein engA [Bacillus cereus BGSC 6E1] gi|229189685|ref|ZP_04316699.1| GTP-binding protein engA [Bacillus cereus ATCC 10876] gi|229195804|ref|ZP_04322564.1| GTP-binding protein engA [Bacillus cereus m1293] gi|229602142|ref|YP_002866007.1| ribosome-associated GTPase EngA [Bacillus anthracis str. A0248] gi|254683091|ref|ZP_05146952.1| GTP-binding protein EngA [Bacillus anthracis str. CNEVA-9066] gi|254723679|ref|ZP_05185465.1| GTP-binding protein EngA [Bacillus anthracis str. A1055] gi|254734440|ref|ZP_05192152.1| GTP-binding protein EngA [Bacillus anthracis str. Western North America USA6153] gi|254740851|ref|ZP_05198539.1| GTP-binding protein EngA [Bacillus anthracis str. Kruger B] gi|254755089|ref|ZP_05207123.1| GTP-binding protein EngA [Bacillus anthracis str. Vollum] gi|254759626|ref|ZP_05211650.1| GTP-binding protein EngA [Bacillus anthracis str. Australia 94] gi|296502173|ref|YP_003663873.1| GTP-binding protein EngA [Bacillus thuringiensis BMB171] gi|300117468|ref|ZP_07055258.1| GTP-binding protein EngA [Bacillus cereus SJ1] gi|301053141|ref|YP_003791352.1| GTP-binding protein EngA [Bacillus anthracis CI] gi|37999522|sp|Q81FR5|DER_BACCR RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|37999526|sp|Q81SW9|DER_BACAN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|81824337|sp|Q63DM8|DER_BACCZ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|81828346|sp|Q6HL51|DER_BACHK RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|166224305|sp|A0RBV9|DER_BACAH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|226741128|sp|B7JGY9|DER_BACC0 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|226741130|sp|B7HHQ7|DER_BACC4 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|226741131|sp|B7HL14|DER_BACC7 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|254783135|sp|C3P591|DER_BACAA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|254783136|sp|C3L9F4|DER_BACAC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|254783137|sp|C1EN01|DER_BACC3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|254783138|sp|B9IVM6|DER_BACCQ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|29895196|gb|AAP08484.1| GTP-binding protein [Bacillus cereus ATCC 14579] gi|30255453|gb|AAP25462.1| ribosome-associated GTPase EngA [Bacillus anthracis str. Ames] gi|47501947|gb|AAT30623.1| GTPase family protein [Bacillus anthracis str. 'Ames Ancestor'] gi|47556883|gb|EAL15213.1| GTP-binding protein, Era/ThdF family [Bacillus cereus G9241] gi|49178358|gb|AAT53734.1| GTPase family protein [Bacillus anthracis str. Sterne] gi|49328810|gb|AAT59456.1| GTP-binding protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51977313|gb|AAU18863.1| GTP-binding protein [Bacillus cereus E33L] gi|118416283|gb|ABK84702.1| GTP-binding protein [Bacillus thuringiensis str. Al Hakam] gi|164714901|gb|EDR20419.1| GTPase family protein [Bacillus anthracis str. A0488] gi|167512979|gb|EDR88352.1| GTPase family protein [Bacillus anthracis str. A0193] gi|167531473|gb|EDR94151.1| GTPase family protein [Bacillus anthracis str. A0442] gi|170128573|gb|EDS97440.1| GTPase family protein [Bacillus anthracis str. A0389] gi|170669873|gb|EDT20614.1| GTPase family protein [Bacillus anthracis str. A0465] gi|172083588|gb|EDT68648.1| GTPase family protein [Bacillus anthracis str. A0174] gi|190560205|gb|EDV14185.1| ribosome-associated GTPase EngA [Bacillus anthracis Tsiankovskii-I] gi|195993994|gb|EDX57950.1| ribosome-associated GTPase EngA [Bacillus cereus W] gi|196022580|gb|EDX61263.1| ribosome-associated GTPase EngA [Bacillus cereus 03BB108] gi|196030132|gb|EDX68732.1| ribosome-associated GTPase EngA [Bacillus cereus NVH0597-99] gi|206734356|gb|EDZ51526.1| ribosome-associated GTPase EngA [Bacillus cereus AH1134] gi|206746944|gb|EDZ58336.1| ribosome-associated GTPase EngA [Bacillus cereus H3081.97] gi|217067748|gb|ACJ81998.1| ribosome-associated GTPase EngA [Bacillus cereus AH187] gi|218159138|gb|ACK59130.1| ribosome-associated GTPase EngA [Bacillus cereus B4264] gi|218536841|gb|ACK89239.1| ribosome-associated GTPase EngA [Bacillus cereus AH820] gi|221239291|gb|ACM12001.1| GTP-binding protein [Bacillus cereus Q1] gi|225788315|gb|ACO28532.1| ribosome-associated GTPase EngA [Bacillus cereus 03BB102] gi|227004060|gb|ACP13803.1| ribosome-associated GTPase EngA [Bacillus anthracis str. CDC 684] gi|228587701|gb|EEK45759.1| GTP-binding protein engA [Bacillus cereus m1293] gi|228593734|gb|EEK51539.1| GTP-binding protein engA [Bacillus cereus ATCC 10876] gi|228599647|gb|EEK57250.1| GTP-binding protein engA [Bacillus cereus BGSC 6E1] gi|228605499|gb|EEK62948.1| GTP-binding protein engA [Bacillus cereus 172560W] gi|228628296|gb|EEK85011.1| GTP-binding protein engA [Bacillus cereus ATCC 4342] gi|228633665|gb|EEK90265.1| GTP-binding protein engA [Bacillus cereus m1550] gi|228639210|gb|EEK95626.1| GTP-binding protein engA [Bacillus cereus BDRD-ST24] gi|228645189|gb|EEL01426.1| GTP-binding protein engA [Bacillus cereus BDRD-ST26] gi|228656517|gb|EEL12344.1| GTP-binding protein engA [Bacillus cereus BDRD-Cer4] gi|228662265|gb|EEL17868.1| GTP-binding protein engA [Bacillus cereus 95/8201] gi|228674337|gb|EEL29581.1| GTP-binding protein engA [Bacillus cereus Rock1-15] gi|228692768|gb|EEL46492.1| GTP-binding protein engA [Bacillus cereus Rock3-42] gi|228704468|gb|EEL56901.1| GTP-binding protein engA [Bacillus cereus Rock4-2] gi|228713908|gb|EEL65792.1| GTP-binding protein engA [Bacillus cereus F65185] gi|228725996|gb|EEL77235.1| GTP-binding protein engA [Bacillus cereus AH676] gi|228775076|gb|EEM23469.1| GTP-binding protein engA [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228801795|gb|EEM48672.1| GTP-binding protein engA [Bacillus thuringiensis serovar pakistani str. T13001] gi|228807705|gb|EEM54227.1| GTP-binding protein engA [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228814438|gb|EEM60703.1| GTP-binding protein engA [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228826810|gb|EEM72577.1| GTP-binding protein engA [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228833010|gb|EEM78578.1| GTP-binding protein engA [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228839337|gb|EEM84631.1| GTP-binding protein engA [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228845510|gb|EEM90543.1| GTP-binding protein engA [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229266550|gb|ACQ48187.1| ribosome-associated GTPase EngA [Bacillus anthracis str. A0248] gi|296323225|gb|ADH06153.1| GTP-binding protein EngA [Bacillus thuringiensis BMB171] gi|298725303|gb|EFI65955.1| GTP-binding protein EngA [Bacillus cereus SJ1] gi|300375310|gb|ADK04214.1| GTP-binding protein EngA [Bacillus cereus biovar anthracis str. CI] gi|324325620|gb|ADY20880.1| GTP-binding protein Der [Bacillus thuringiensis serovar finitimus YBT-020] Length = 436 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 3/85 (3%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 ++G N GKSSL NAL ++ IV+++ GTTRD + +G I DTAG+R+ + Sbjct: 180 LIGRPNVGKSSLVNALLGQERVIVSNVAGTTRDAVDTPYSKDGKDYVIIDTAGMRKKGKV 239 Query: 284 ---VEKEGIKRTFLEVENADLILLL 305 EK + R +E +D++L++ Sbjct: 240 YESTEKYSVLRALRAIERSDVVLVV 264 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS++FN + + V+IV DIPG TRD + + + I DT GI D Sbjct: 6 IAIVGRPNVGKSTIFNRIVGERVSIVEDIPGVTRDRIYSAGEWLNHEFNIIDTGGIDIGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + ++ + ++ AD+I+ + Sbjct: 66 EPFLTQIRQQAEVAIDEADVIIFM 89 >gi|224438499|ref|ZP_03659419.1| GTP-binding protein EngA [Helicobacter cinaedi CCUG 18818] gi|313144927|ref|ZP_07807120.1| GTP-binding protein engA [Helicobacter cinaedi CCUG 18818] gi|313129958|gb|EFR47575.1| GTP-binding protein engA [Helicobacter cinaedi CCUG 18818] Length = 527 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 48/84 (57%), Gaps = 1/84 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN L K+ +AI +++ GTTRDV ++ G V++ DT G+ + Sbjct: 4 IAILGKPNVGKSSLFNRLIKQHLAITSNVSGTTRDVKKACFEISGVDVELIDTGGLDKAQ 63 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + K + + ADL+L + Sbjct: 64 GLFAKVS-ENSLKAGAEADLVLYM 86 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 50/84 (59%), Gaps = 2/84 (2%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 I+G N GKSSL NAL K+ ++V+++ GTT D + ++ G V+ DTAGIR + I Sbjct: 211 IIGRVNVGKSSLLNALLGKERSVVSEVAGTTIDPVDETGEILGQKVRFVDTAGIRRSSKI 270 Query: 284 --VEKEGIKRTFLEVENADLILLL 305 +EK + RT + + + +L+ Sbjct: 271 LGIEKFALDRTNKALAQSHIAILV 294 >gi|94676730|ref|YP_588490.1| GTP-binding protein EngA [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|166224308|sp|Q1LU74|DER_BAUCH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|94219880|gb|ABF14039.1| GTP-binding protein EngA [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 472 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G SN GKS+L N+ ++ +V D+PGTTRD I + + DTAG+R+ Sbjct: 189 KLAIVGSSNVGKSTLANSFLGEERVVVFDMPGTTRDSTYIPMIRAEREYVLIDTAGLRKR 248 Query: 281 D---DIVEKEGIKRTFLEVENADLILLL 305 DI EK +T +E ++++LL+ Sbjct: 249 SKITDIAEKLSTVKTLQSIEESNVVLLV 276 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 43/84 (51%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L + AIV D G TRD + Y + DT GI + Sbjct: 5 IALVGRPNVGKSTLFNKLTHTNDAIVADYSGLTRDRKYGHAKWKNYNFIVIDTGGIGISK 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + IK++ L ++ AD+I + Sbjct: 65 KGLAIHIIKQSLLAIKEADVIFFV 88 >gi|77164340|ref|YP_342865.1| small GTP-binding protein domain-containing protein [Nitrosococcus oceani ATCC 19707] gi|254434862|ref|ZP_05048370.1| GTPase, putative [Nitrosococcus oceani AFC27] gi|123757906|sp|Q3JCW1|DER_NITOC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|76882654|gb|ABA57335.1| Small GTP-binding domain protein [Nitrosococcus oceani ATCC 19707] gi|207091195|gb|EDZ68466.1| GTPase, putative [Nitrosococcus oceani AFC27] Length = 464 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/95 (32%), Positives = 52/95 (54%), Gaps = 3/95 (3%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273 EI G + ++G N GKS+L N + ++ + ++IPGTTRD ++I G + D Sbjct: 171 EIQAKGLQFAVIGRPNVGKSTLVNRILGEERVLSSEIPGTTRDSISIPFRHHGKDYTLVD 230 Query: 274 TAGIRETD---DIVEKEGIKRTFLEVENADLILLL 305 TAGIR D VEK + ++ + A +++L+ Sbjct: 231 TAGIRRRSRILDKVEKFSVIQSLQSIAIAQVVILV 265 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 6/87 (6%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK---ISDTAGIR 278 + ++G N GKS+LFN L + A+V D PG TRD L Y + + DT G+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRSRDALVVDQPGVTRDR---KYGLAHYGEQSFFVVDTGGVM 61 Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL 305 E + + + + L +E AD+I L Sbjct: 62 EQESGIGRLMRAQAQLAIEEADVIFFL 88 >gi|39997324|ref|NP_953275.1| GTP-binding protein Era [Geobacter sulfurreducens PCA] gi|39984215|gb|AAR35602.1| GTP-binding protein Era [Geobacter sulfurreducens PCA] gi|298506261|gb|ADI84984.1| GTP-binding protein Era [Geobacter sulfurreducens KN400] Length = 299 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 49/193 (25%), Positives = 86/193 (44%), Gaps = 22/193 (11%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R+G+ + I+G N GKS+L N + + + I +D P TTR+ + +L G + DT G Sbjct: 8 RSGF-VSIIGRPNVGKSTLLNRILGEKIVITSDKPQTTRNRIQGIHNLPGAQIVFIDTPG 66 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEIN-----SKKEIS--FPK-NIDFIFIGTK 328 I + K ++ + DL++LL E N ++EI+ P N+ + K Sbjct: 67 IHHARSRLNKFMVEEALSSIREVDLVMLLVEANRAPGDQEREIAGLLPSVNVPVFLVVNK 126 Query: 329 SDL---------YSTYTEEYDHL----ISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375 DL + Y E + +S+ TGE +E L+ ++ L P I + Sbjct: 127 IDLIDPDILAERLTAYAELFPFREVVPVSAETGENVERLVEVVRDTLPEGPVYFPDDILT 186 Query: 376 HKRHLYHLSQTVR 388 + +++ VR Sbjct: 187 DLPERFIVAEIVR 199 >gi|306829944|ref|ZP_07463131.1| ribosome-associated GTPase EngA [Streptococcus mitis ATCC 6249] gi|304427955|gb|EFM31048.1| ribosome-associated GTPase EngA [Streptococcus mitis ATCC 6249] Length = 436 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 43/172 (25%), Positives = 80/172 (46%), Gaps = 44/172 (25%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRE 279 K ++G N GKSSL NA+ +D I + + GTTRD + D +G + DTAG+R+ Sbjct: 176 KFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDADGQEFTMIDTAGMRK 235 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336 + + EK + R ++ +D++L++ +N+++ I Sbjct: 236 SGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEGI---------------------- 271 Query: 337 EEYDHLISSF---TGEGLEELINKIKSI-------------LSNKFKKLPFS 372 EYD I+ F G+G+ ++NK ++ + +F+ LP++ Sbjct: 272 REYDKRIAGFAHEAGKGMIIVVNKWDTLEKDNHTMKNWEEDIREQFQYLPYA 323 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN +A + ++IV D+ G TRD + + + DT GI + D Sbjct: 6 VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRSFSMIDTGGIDDVD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + + +E AD+I+ + Sbjct: 66 APFMEQIKHQAEIAMEEADVIVFV 89 >gi|94266754|ref|ZP_01290422.1| Small GTP-binding protein domain:GTP-binding:GTP-binding protein Era [delta proteobacterium MLMS-1] gi|94270658|ref|ZP_01291794.1| Small GTP-binding protein domain:GTP-binding:GTP-binding protein Era [delta proteobacterium MLMS-1] gi|93450717|gb|EAT01793.1| Small GTP-binding protein domain:GTP-binding:GTP-binding protein Era [delta proteobacterium MLMS-1] gi|93452576|gb|EAT03153.1| Small GTP-binding protein domain:GTP-binding:GTP-binding protein Era [delta proteobacterium MLMS-1] Length = 299 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 44/196 (22%), Positives = 86/196 (43%), Gaps = 23/196 (11%) Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274 +I G+ + ++G NAGKS+L N L + +AIVT P TTR+ + ++ Y + + DT Sbjct: 8 VISCGF-VALIGAPNAGKSTLLNRLLGQKIAIVTPKPQTTRNRILGVVNHRDYQMVLLDT 66 Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNID---------FIFI 325 G+ + + E ++ D++ L +++S+ E ++ + + Sbjct: 67 PGLHRAKNRLNSEMVRLARNAAGEVDVVAYLVDVSSETEAEQRRHAQKLLREAGKPALLL 126 Query: 326 GTKSD---------LYSTYTEEYDHL----ISSFTGEGLEELINKIKSILSNKFKKLPFS 372 G K D L + + E Y +S+ TGEG + + + +L + P Sbjct: 127 GNKIDRIGKEKLLPLIAAWQEVYPFQAIIPLSALTGEGCQLFLTEASRLLPTGPRLFPED 186 Query: 373 IPSHKRHLYHLSQTVR 388 IP+ + + +R Sbjct: 187 IPTDASERFICGEIIR 202 >gi|305681382|ref|ZP_07404189.1| ribosome-associated GTPase EngA [Corynebacterium matruchotii ATCC 14266] gi|305659587|gb|EFM49087.1| ribosome-associated GTPase EngA [Corynebacterium matruchotii ATCC 14266] Length = 484 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 51/89 (57%), Gaps = 6/89 (6%) Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250 +VL++IL S Q + I ++ ++G N GKSSL N +A ++ ++V D+ Sbjct: 201 DVLDEIL------RSFPDQPRQPSITEGPRRVALVGKPNVGKSSLLNKIAGEERSVVDDV 254 Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 GTT D + + L+G+L K DTAG+R+ Sbjct: 255 AGTTVDPVDSLVQLDGHLWKFIDTAGLRK 283 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 41/84 (48%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+L N + A+V D PG TRD ++ D G + DT G Sbjct: 53 VTIVGRPNVGKSTLVNRFLGRREAVVEDFPGVTRDRISYIADWGGQRFWVQDTGGWDPNV 112 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + ++ +E AD+I+++ Sbjct: 113 KGIHGAIARQAETAMETADVIVMV 136 >gi|239636852|ref|ZP_04677851.1| ribosome-associated GTPase EngA [Staphylococcus warneri L37603] gi|239597526|gb|EEQ80024.1| ribosome-associated GTPase EngA [Staphylococcus warneri L37603] Length = 436 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 28/88 (31%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSL NA+ ++ IV+++ GTTRD + + +G + DTAG+R+ Sbjct: 177 RLSIIGRPNVGKSSLVNAILGEERVIVSNVAGTTRDAVDTEYSFDGQDYVLIDTAGMRKK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + EK + R +E ++++L++ Sbjct: 237 GKVYESTEKYSVLRALKAIERSNVVLVV 264 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 45/84 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN + + V+IV D PG TRD + + + I DT GI D Sbjct: 6 VAIVGKPNVGKSTIFNRVVGERVSIVEDTPGVTRDRIYSSGEWLTHEFNIIDTGGIEIGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + + + +E AD+I+ + Sbjct: 66 APFQTQIRAQAEIAIEEADVIVFM 89 >gi|255521525|ref|ZP_05388762.1| GTP-binding protein EngA [Listeria monocytogenes FSL J1-175] Length = 259 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 3/101 (2%) Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262 + +H + + E + K ++G N GKSS+ NAL +D IV+DI GTTRD + Sbjct: 159 VRAHFPKEEEEEYPDDTVKFSLIGRPNVGKSSILNALLGEDRVIVSDIAGTTRDAIDTTY 218 Query: 263 DLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENAD 300 +G + DTAG+R+ + EK + R +E +D Sbjct: 219 TFDGQDYVMIDTAGMRKRGKVYESTEKYSVLRAMRAIERSD 259 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN + + V+IV D+PG TRD + + G I DT GI +D Sbjct: 6 VAIVGRPNVGKSTIFNRIVGERVSIVEDVPGVTRDRIYNSAEWLGKEFNIIDTGGIDLSD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + ++ + + ++ AD+I+ + Sbjct: 66 EPFLEQIRAQAEIAIDEADVIIFI 89 >gi|229160554|ref|ZP_04288549.1| GTP-binding protein engA [Bacillus cereus R309803] gi|228622964|gb|EEK79795.1| GTP-binding protein engA [Bacillus cereus R309803] Length = 438 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 3/85 (3%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 ++G N GKSSL NAL ++ IV+++ GTTRD + +G I DTAG+R+ + Sbjct: 182 LIGRPNVGKSSLVNALLGQERVIVSNVAGTTRDAVDTPYSKDGKDYVIIDTAGMRKKGKV 241 Query: 284 ---VEKEGIKRTFLEVENADLILLL 305 EK + R +E +D++L++ Sbjct: 242 YESTEKYSVLRALRAIERSDVVLVV 266 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS++FN + + V+IV DIPG TRD + D + I DT GI D Sbjct: 8 IAIVGRPNVGKSTIFNRIVGERVSIVEDIPGVTRDRIYSAGDWLNHEFNIIDTGGIDIGD 67 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + ++ + ++ AD+I+ + Sbjct: 68 EPFLTQIRQQAEVAIDEADVIIFM 91 >gi|224476594|ref|YP_002634200.1| GTP-binding protein EngA [Staphylococcus carnosus subsp. carnosus TM300] gi|254783167|sp|B9DNV9|DER_STACT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|222421201|emb|CAL28015.1| putative GTP-binding protein [Staphylococcus carnosus subsp. carnosus TM300] Length = 436 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ ++G N GKSSL NA+ +D IV++I GTTRD + + E + DTAG+R+ Sbjct: 177 KLSLIGRPNVGKSSLVNAILGEDRVIVSNIAGTTRDAIDTEYSYEDQDYVLIDTAGMRKK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + EK + R +E ++++L++ Sbjct: 237 GKVYESTEKYSVLRALKAIERSNVVLVV 264 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 42/165 (25%), Positives = 76/165 (46%), Gaps = 25/165 (15%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN + + V+IV D PG TRD + + + + DT GI TD Sbjct: 6 VAIVGRPNVGKSTIFNRIVGERVSIVEDTPGVTRDRIYSSGEWLTHDFNVIDTGGIELTD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS----------FPKNIDFIFIGTKSDL 331 + + + + ++ AD+I+ + +N ++ ++ + N + K D Sbjct: 66 APFQTQIRAQAEIAIDEADVIIFM--VNQREGLTQTDEMIAQMLYKTNKPVVLAVNKVDN 123 Query: 332 YSTYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFK 367 T+ YD IS G GL +L++++ +N FK Sbjct: 124 PEMRTDIYDFYALGFGEPFPISGSHGLGLGDLLDEV----ANNFK 164 >gi|301025019|ref|ZP_07188619.1| small GTP-binding protein [Escherichia coli MS 69-1] gi|300396258|gb|EFJ79796.1| small GTP-binding protein [Escherichia coli MS 69-1] Length = 290 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 41/108 (37%), Positives = 58/108 (53%), Gaps = 4/108 (3%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L +S HI + L ++ R+ I I+G S AGKSSL NAL + +V V+D+ TR+V Sbjct: 17 LPYSLSRHILE-HLRKLTRHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQ 75 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305 L GY + I+D G+ E+ D E E + R L DL+L L Sbjct: 76 RFRLSGHGYSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 121 >gi|197303809|ref|ZP_03168845.1| hypothetical protein RUMLAC_02548 [Ruminococcus lactaris ATCC 29176] gi|197297102|gb|EDY31666.1| hypothetical protein RUMLAC_02548 [Ruminococcus lactaris ATCC 29176] Length = 417 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 54/172 (31%), Positives = 85/172 (49%), Gaps = 37/172 (21%) Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTAGIRETDD 282 G NAGKSS+ NA+ +++A+V+++ GTT D + ++L G +V I DT GI + D Sbjct: 17 FGCRNAGKSSIVNAVTGQNLAVVSNVKGTTTDPVVKAMELLPAGPVVMI-DTPGI-DDDG 74 Query: 283 IVEKEGIKRTFLEVENADLIL---------------LLKEINSKKEISFPKNIDFIFIGT 327 + K +++++ + DL + LLKEI +K + FI Sbjct: 75 ELGKLRVEKSYQMLNRTDLAIVVIDGGTGIKKEDFALLKEIEKRK-------VPFIIAVN 127 Query: 328 KSDLYSTY----------TEEYDHLISSFTGEGLEELINKI-KSILSNKFKK 368 KSDL + EE +S+ TGEG+ EL +I +SI + K KK Sbjct: 128 KSDLLKEHRIQSKGRGKVPEESLIYVSAETGEGIRELKKRIGESICTEKNKK 179 >gi|194246522|ref|YP_002004161.1| GTP-binding protein EngA [Candidatus Phytoplasma mali] gi|193806879|emb|CAP18308.1| conserved hypothetical protein [Candidatus Phytoplasma mali] Length = 441 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/87 (36%), Positives = 47/87 (54%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 +K+ I+G N GKSS+FN + KK ++IV D PG TRD + D I DT GI Sbjct: 2 NFKVAIVGRPNVGKSSIFNRILKKRLSIVHDKPGITRDRIYAQADWLTKSFDIIDTGGIE 61 Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL 305 + K+ + L ++ A+LIL + Sbjct: 62 IKNTPFLKQIKYQVQLAIDEANLILFV 88 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 38/67 (56%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K +LG N GKS+L N + ++ +V+DI GTT D + + ++ DTAGI++ Sbjct: 175 KFCLLGRPNVGKSTLTNMILSQERMVVSDIAGTTTDAVDTFFQKGEKIYQVIDTAGIKKR 234 Query: 281 DDIVEKE 287 I EKE Sbjct: 235 GKIYEKE 241 >gi|148543995|ref|YP_001271365.1| GTP-binding protein EngA [Lactobacillus reuteri DSM 20016] gi|184153389|ref|YP_001841730.1| GTP-binding protein EngA [Lactobacillus reuteri JCM 1112] gi|194467923|ref|ZP_03073909.1| small GTP-binding protein [Lactobacillus reuteri 100-23] gi|166920101|sp|A5VJK4|DER_LACRD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|229784134|sp|B2G718|DER_LACRJ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|148531029|gb|ABQ83028.1| small GTP-binding protein [Lactobacillus reuteri DSM 20016] gi|183224733|dbj|BAG25250.1| GTP-binding protein [Lactobacillus reuteri JCM 1112] gi|194452776|gb|EDX41674.1| small GTP-binding protein [Lactobacillus reuteri 100-23] Length = 437 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 40/156 (25%), Positives = 75/156 (48%), Gaps = 21/156 (13%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN +A + ++IV D PG TRD + + G + DT GI +D Sbjct: 6 VAVVGRPNVGKSTLFNRIAGERISIVEDTPGVTRDRIYAHAEWLGKHFSMIDTGGIEISD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK----- 328 + + ++ + ++ AD+I+ + ++ + I + N + K Sbjct: 66 QPLLTQIRQQAEIAIDEADVIIFVADVENGVTDADEQVARILYRSNKPVVLAVNKVDNPE 125 Query: 329 --SDLYSTYT----EEYDHLISSFTGEGLEELINKI 358 SD+Y Y+ E Y +SS G G+ +L++ + Sbjct: 126 RRSDIYDYYSLGLGEPY--AVSSVHGIGMGDLLDAV 159 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 51/85 (60%), Gaps = 4/85 (4%) Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDI 283 +G N GKSSL NA+ ++ IV+++ GTTRD + + +G + DTAGIR+ I Sbjct: 180 IGRPNVGKSSLVNAILGENRVIVSNVAGTTRDAINTQFETADGQKFTMVDTAGIRKKGKI 239 Query: 284 ---VEKEGIKRTFLEVENADLILLL 305 E+ + R+ ++++D++L++ Sbjct: 240 YENTERYSLMRSMRAIDDSDVVLVV 264 >gi|322388795|ref|ZP_08062392.1| ribosome-associated GTPase EngA [Streptococcus infantis ATCC 700779] gi|321140414|gb|EFX35922.1| ribosome-associated GTPase EngA [Streptococcus infantis ATCC 700779] Length = 436 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 43/172 (25%), Positives = 80/172 (46%), Gaps = 44/172 (25%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRE 279 K ++G N GKSSL NA+ +D I + + GTTRD + D +G + DTAG+R+ Sbjct: 176 KFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDADGQEFTMIDTAGMRK 235 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336 + + EK + R ++ +D++L++ +N+++ I Sbjct: 236 SGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEGI---------------------- 271 Query: 337 EEYDHLISSF---TGEGLEELINKIKSI-------------LSNKFKKLPFS 372 EYD I+ F G+G+ ++NK ++ + +F+ LP++ Sbjct: 272 REYDKRIAGFAHEAGKGMIIVVNKWDTLEKDNHTMKNWEEDIREQFQYLPYA 323 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN +A + ++IV D+ G TRD + + + DT GI + D Sbjct: 6 VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRSFSMIDTGGIDDVD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ +T + +E AD+I+ + Sbjct: 66 APFMEQIKHQTEIAMEEADVIVFV 89 >gi|257873989|ref|ZP_05653642.1| GTP-binding protein engA [Enterococcus casseliflavus EC10] gi|257808153|gb|EEV36975.1| GTP-binding protein engA [Enterococcus casseliflavus EC10] Length = 436 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 4/89 (4%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRE 279 K ++G N GKSSL NA+ ++ IV+DI GTTRD + E G + DTAG+R+ Sbjct: 176 KFSLIGRPNVGKSSLINAILGEERVIVSDIEGTTRDAIDTHFTSESGQEFTMIDTAGMRK 235 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLL 305 + EK + R +E +D++L++ Sbjct: 236 KGKVYESTEKYSVMRAMRAIERSDVVLMV 264 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS++FN +A + ++IV D PG TRD + + G + DT GI +D Sbjct: 6 IAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYATGEWLGREFSVIDTGGIDLSD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + + + ++ AD+I+ + Sbjct: 66 EPFMDQIKHQAEIAIDEADVIVFI 89 >gi|257869556|ref|ZP_05649209.1| GTP-binding protein engA [Enterococcus gallinarum EG2] gi|257803720|gb|EEV32542.1| GTP-binding protein engA [Enterococcus gallinarum EG2] Length = 436 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 4/89 (4%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRE 279 K ++G N GKSSL NA+ ++ IV+DI GTTRD + E G + DTAG+R+ Sbjct: 176 KFSLIGRPNVGKSSLINAILGEERVIVSDIEGTTRDAIDTHFTSENGQEFTMIDTAGMRK 235 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLL 305 + EK + R +E +D++L++ Sbjct: 236 KGKVYESTEKYSVMRAMRAIERSDVVLMV 264 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS++FN +A + ++IV D PG TRD + + G I DT GI D Sbjct: 6 IAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYATGEWLGREFSIIDTGGIDLGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + + + ++ AD+I+ + Sbjct: 66 EPFMDQIKHQAEIAIDEADVIVFI 89 >gi|42780705|ref|NP_977952.1| GTP-binding protein EngA [Bacillus cereus ATCC 10987] gi|81831124|sp|Q73AZ1|DER_BACC1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|42736625|gb|AAS40560.1| GTPase family protein [Bacillus cereus ATCC 10987] Length = 436 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 3/85 (3%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 ++G N GKSSL NAL ++ IV+++ GTTRD + +G I DTAG+R+ + Sbjct: 180 LIGRPNVGKSSLVNALLGQERVIVSNVAGTTRDAVDTPYSKDGKDYVIIDTAGMRKKGKV 239 Query: 284 ---VEKEGIKRTFLEVENADLILLL 305 EK + R +E +D++L++ Sbjct: 240 YESTEKYSVLRALRAIERSDVVLVV 264 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS++FN + + V+IV DIPG TRD + + + I DT GI D Sbjct: 6 IAIVGRPNVGKSTIFNRIVGERVSIVEDIPGVTRDRIYSAGEWLNHEFNIIDTGGIDIGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + ++ + ++ AD+I+ + Sbjct: 66 EPFLTQIRQQAEVAIDEADVIIFM 89 >gi|329770520|ref|ZP_08261898.1| GTP-binding protein Era [Gemella sanguinis M325] gi|328836269|gb|EGF85938.1| GTP-binding protein Era [Gemella sanguinis M325] Length = 302 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 51/197 (25%), Positives = 93/197 (47%), Gaps = 24/197 (12%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-IDLDLEGYLVKIS 272 E I+ G+ + I+G NAGKS+L N + K+ +AI++D P TTR+++ + D + +V I Sbjct: 4 EQIKTGF-VTIIGRPNAGKSTLLNNILKQKIAIMSDKPQTTRNIINGVYTDSDSQIVFI- 61 Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------------INSKKEISFP--- 317 DT GI + + +K ++ ++++ L+ IN KE+ P Sbjct: 62 DTPGIHKPKHKLGDYMMKLASSAIQESEIVYLIINASEKFGPGDQHLINIVKELKVPTFL 121 Query: 318 --KNIDFIFIGTKSDLYSTYTEEYDHL----ISSFTGEGLEELINKIKSILSNKFKKLPF 371 ID I ++ + Y E YD + IS+ ++ L++ K L FK P Sbjct: 122 LINKIDLITPEKLLEIITFYNELYDFVEIVPISALKSINVDNLLSTTKKYLQPSFKMYPD 181 Query: 372 SIPSHKRHLYHLSQTVR 388 + + + +S+ +R Sbjct: 182 DVITDSPEYFVISEFIR 198 >gi|227364908|ref|ZP_03848953.1| GTP-binding protein EngA [Lactobacillus reuteri MM2-3] gi|325682467|ref|ZP_08161984.1| ribosome-associated GTPase EngA [Lactobacillus reuteri MM4-1A] gi|227070055|gb|EEI08433.1| GTP-binding protein EngA [Lactobacillus reuteri MM2-3] gi|324978306|gb|EGC15256.1| ribosome-associated GTPase EngA [Lactobacillus reuteri MM4-1A] Length = 440 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 40/156 (25%), Positives = 75/156 (48%), Gaps = 21/156 (13%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN +A + ++IV D PG TRD + + G + DT GI +D Sbjct: 9 VAVVGRPNVGKSTLFNRIAGERISIVEDTPGVTRDRIYAHAEWLGKHFSMIDTGGIEISD 68 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK----- 328 + + ++ + ++ AD+I+ + ++ + I + N + K Sbjct: 69 QPLLTQIRQQAEIAIDEADVIIFVADVENGVTDADEQVARILYRSNKPVVLAVNKVDNPE 128 Query: 329 --SDLYSTYT----EEYDHLISSFTGEGLEELINKI 358 SD+Y Y+ E Y +SS G G+ +L++ + Sbjct: 129 RRSDIYDYYSLGLGEPY--AVSSVHGIGMGDLLDAV 162 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 51/85 (60%), Gaps = 4/85 (4%) Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDI 283 +G N GKSSL NA+ ++ IV+++ GTTRD + + +G + DTAGIR+ I Sbjct: 183 IGRPNVGKSSLVNAILGENRVIVSNVAGTTRDAINTQFETADGQKFTMVDTAGIRKKGKI 242 Query: 284 ---VEKEGIKRTFLEVENADLILLL 305 E+ + R+ ++++D++L++ Sbjct: 243 YENTERYSLMRSMRAIDDSDVVLVV 267 >gi|94265607|ref|ZP_01289351.1| Small GTP-binding protein domain:GTP-binding:GTP-binding protein Era [delta proteobacterium MLMS-1] gi|93453886|gb|EAT04244.1| Small GTP-binding protein domain:GTP-binding:GTP-binding protein Era [delta proteobacterium MLMS-1] Length = 299 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 44/196 (22%), Positives = 86/196 (43%), Gaps = 23/196 (11%) Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274 +I G+ + ++G NAGKS+L N L + +AIVT P TTR+ + ++ Y + + DT Sbjct: 8 VISCGF-VALIGAPNAGKSTLLNRLLGQKIAIVTPKPQTTRNRILGVVNHRDYQMVLLDT 66 Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNID---------FIFI 325 G+ + + E ++ D++ L +++S+ E ++ + + Sbjct: 67 PGLHRAKNRLNSEMVRLARNAAGEVDVVAYLVDVSSETEAEQRRHAQKLLREAGKPALLL 126 Query: 326 GTKSD---------LYSTYTEEYDHL----ISSFTGEGLEELINKIKSILSNKFKKLPFS 372 G K D L + + E Y +S+ TGEG + + + +L + P Sbjct: 127 GNKIDRIGKEKLLPLIAAWQEVYPFQAIIPLSALTGEGCQLFLTEASRLLPTGPRLFPED 186 Query: 373 IPSHKRHLYHLSQTVR 388 IP+ + + +R Sbjct: 187 IPTDASERFICGEIIR 202 >gi|322375706|ref|ZP_08050218.1| ribosome-associated GTPase EngA [Streptococcus sp. C300] gi|321279414|gb|EFX56455.1| ribosome-associated GTPase EngA [Streptococcus sp. C300] Length = 436 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 43/172 (25%), Positives = 80/172 (46%), Gaps = 44/172 (25%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRE 279 K ++G N GKSSL NA+ +D I + + GTTRD + D +G + DTAG+R+ Sbjct: 176 KFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDTDGQEFTMIDTAGMRK 235 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336 + + EK + R ++ +D++L++ +N+++ I Sbjct: 236 SGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEGI---------------------- 271 Query: 337 EEYDHLISSF---TGEGLEELINKIKSI-------------LSNKFKKLPFS 372 EYD I+ F G+G+ ++NK ++ + +F+ LP++ Sbjct: 272 REYDKRIAGFAHEAGKGMIIVVNKWDTLDKDNHTMKNWEEDIREQFQYLPYA 323 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS+LFN +A + ++IV D+ G TRD + + + DT GI + D Sbjct: 6 IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRSFSMIDTGGIDDVD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + + +E AD+I+ + Sbjct: 66 APFMEQIKHQAEIAMEEADVIVFV 89 >gi|116073379|ref|ZP_01470641.1| GTP-binding protein Era [Synechococcus sp. RS9916] gi|116068684|gb|EAU74436.1| GTP-binding protein Era [Synechococcus sp. RS9916] Length = 320 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 45/199 (22%), Positives = 86/199 (43%), Gaps = 24/199 (12%) Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272 G R+G+ + ++G N GKS+L N L VAI + + TTR+ L L E + + Sbjct: 15 GSTFRSGF-VALIGRPNVGKSTLVNQLVGDKVAITSPVAQTTRNRLRAILTTETAQLILV 73 Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------------INSKKEISFPKNI 320 DT GI + ++ + ++ + D +LLL E +N ++ P + Sbjct: 74 DTPGIHKPHHLLGERLVQSARAAIGEVDQVLLLLEGCEQPGKGDAFIVNLLQQQRLPVQV 133 Query: 321 -----DFIFIGTKSDLYSTYTEEYD------HLISSFTGEGLEELINKIKSILSNKFKKL 369 D + + T+ + + Y E H S+ +GEG +L+ I + + + Sbjct: 134 VLNKWDRVPVETRPEADAAYRELLSTTNWPLHHCSALSGEGCPDLVEAISAQMPEGPQLY 193 Query: 370 PFSIPSHKRHLYHLSQTVR 388 P + S + +++ +R Sbjct: 194 PPDMVSDQPERLLMAELIR 212 >gi|307244110|ref|ZP_07526228.1| ribosome-associated GTPase EngA [Peptostreptococcus stomatis DSM 17678] gi|306492481|gb|EFM64516.1| ribosome-associated GTPase EngA [Peptostreptococcus stomatis DSM 17678] Length = 442 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + ++G N GKS++FN L ++IV D PG TRD + +++ I DT GI E+ Sbjct: 9 VAVVGRPNVGKSTIFNKLTGTKISIVEDTPGVTRDRIFGEVEWLNKYFTIIDTGGIEPES 68 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 DDI+ + + L V+ A +IL + Sbjct: 69 DDIILSQMRNQAMLAVDMAHVILFV 93 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/110 (30%), Positives = 59/110 (53%), Gaps = 3/110 (2%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L +++ + +G E + ++ I G NAGKSS+ N + ++ IV+ I GTTRD + Sbjct: 159 LLDEVVENFPEGMNTEYDEDVIRVAITGKPNAGKSSILNNILGEERVIVSPIAGTTRDAI 218 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305 + + + DTAGIR + VE+ + R+ V+ AD++L++ Sbjct: 219 DTYFEKDDNKFLLIDTAGIRRRSKVYENVERFSVIRSMSAVDRADVVLIV 268 >gi|218781934|ref|YP_002433252.1| GTP-binding protein EngA [Desulfatibacillum alkenivorans AK-01] gi|226741134|sp|B8FM51|DER_DESAA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|218763318|gb|ACL05784.1| small GTP-binding protein [Desulfatibacillum alkenivorans AK-01] Length = 445 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 3/87 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G NAGKSSL N + ++ +V+D PGTTRD + + G + DTAGIR Sbjct: 176 IGVVGRPNAGKSSLINKILGQERLLVSDTPGTTRDAVDTVCQVNGKPYLLLDTAGIRRKG 235 Query: 282 DI---VEKEGIKRTFLEVENADLILLL 305 + +EK I R +E D+ L++ Sbjct: 236 KVKHKLEKFSIVRALKGLERCDVALVM 262 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 33/60 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN + K A+V D PG TRD D + +G + DT G + D Sbjct: 4 LAIMGRPNVGKSTLFNRITKSRKAMVDDSPGVTRDRNYADAEHDGVKFSVVDTGGFSKND 63 >gi|158320432|ref|YP_001512939.1| small GTP-binding protein [Alkaliphilus oremlandii OhILAs] gi|166920096|sp|A8MH56|DER_ALKOO RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|158140631|gb|ABW18943.1| small GTP-binding protein [Alkaliphilus oremlandii OhILAs] Length = 440 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 52/85 (61%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + ++G N GKS+LFN +A + ++IV + PG TRD + + + Y + DT GI E+ Sbjct: 6 VAVVGRPNVGKSTLFNKIAGERISIVENKPGVTRDRIYAEAEWLNYQFTLIDTGGIEPES 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 ++I+ + ++ L +E A++I+ + Sbjct: 66 EEIIPAQMRRQAELAMETANVIIFV 90 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 5/89 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRE 279 K+ ++G N GKSSL N + ++ IV+DI GTTRD + T D + V I DTAGIR Sbjct: 178 KVAMIGKPNVGKSSLINRILGEERVIVSDIAGTTRDAIDTPFTDGDDRYVLI-DTAGIRR 236 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLL 305 I +EK I R VE +D+ LL+ Sbjct: 237 KSRITESIEKYSIVRAIAAVEKSDVCLLV 265 >gi|325294346|ref|YP_004280860.1| small GTP-binding protein [Desulfurobacterium thermolithotrophum DSM 11699] gi|325064794|gb|ADY72801.1| small GTP-binding protein [Desulfurobacterium thermolithotrophum DSM 11699] Length = 430 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/89 (38%), Positives = 54/89 (60%), Gaps = 2/89 (2%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAGIRET 280 I + G +N GKSS N + ++V+IV+DIPGTT DV+ ++ L V DTAGI + Sbjct: 12 IGVFGRTNVGKSSFINLVTGQEVSIVSDIPGTTTDVVEKAMEILPIGPVLFLDTAGI-DD 70 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN 309 + ++ KE +++ F + D+ LL+ E N Sbjct: 71 ETLLGKERVRKAFEVLRRCDVALLMLEPN 99 >gi|212705028|ref|ZP_03313156.1| hypothetical protein DESPIG_03096 [Desulfovibrio piger ATCC 29098] gi|212671580|gb|EEB32063.1| hypothetical protein DESPIG_03096 [Desulfovibrio piger ATCC 29098] Length = 419 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/86 (37%), Positives = 53/86 (61%), Gaps = 3/86 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGIRE 279 I + G NAGKSSL NAL +DVAIV+ PG+T D + T+++ G +V + DTAG+ + Sbjct: 17 IGLFGRRNAGKSSLLNALVGQDVAIVSPTPGSTTDPVEKTLEMAPLGPVVFL-DTAGLDD 75 Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305 + + + ++R+ + D+ LL+ Sbjct: 76 REASLGAQRVERSLRAMRRVDVALLV 101 >gi|166030494|ref|ZP_02233323.1| hypothetical protein DORFOR_00155 [Dorea formicigenerans ATCC 27755] gi|166029746|gb|EDR48503.1| hypothetical protein DORFOR_00155 [Dorea formicigenerans ATCC 27755] Length = 428 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 42/122 (34%), Positives = 67/122 (54%), Gaps = 15/122 (12%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280 I I G NAGKSS+ NAL +++AIV+DI GTT D + ++L V I DT G+ + Sbjct: 14 IGIFGKRNAGKSSVINALTGQNLAIVSDIKGTTTDPVLKSMELLPLGPVVIIDTPGLDDD 73 Query: 281 DDIVEKEGIKRTFLEVENADLILLL-----------KEINSKKEISFPKNIDFIFIGTKS 329 DI+ K I++ + + D+ +L+ K+I ++ + KNI +I + K+ Sbjct: 74 ADILGKLRIQKAYQMLNKTDIAILVIDGTVGMTEEDKKILTRIQ---DKNIPYIVVLNKA 130 Query: 330 DL 331 DL Sbjct: 131 DL 132 >gi|326773386|ref|ZP_08232669.1| ribosome-associated GTPase EngA [Actinomyces viscosus C505] gi|326636616|gb|EGE37519.1| ribosome-associated GTPase EngA [Actinomyces viscosus C505] Length = 719 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 54/90 (60%), Gaps = 4/90 (4%) Query: 189 SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVT 248 S EVL+ ++ + ++S+ + G++ ++I ++G N GKSSL N++A ++ +V Sbjct: 431 SGEVLDAVMEVLPEVSAVATAAPEGDL----HRIALVGRPNVGKSSLLNSIAGQERVVVN 486 Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 + GTTRD + ++L+G DTAGIR Sbjct: 487 ETAGTTRDPVDEIIELDGRQWVFVDTAGIR 516 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 35/127 (27%), Positives = 62/127 (48%), Gaps = 3/127 (2%) Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKL--GEIIRNGYKIV-ILGHSNAGKSSLFNA 238 ED++ + + L D + D++ + G L G+ + G ++ ++G N GKS+L N Sbjct: 242 EDLRAQAMRAGLADYELDEEDLALLEADGGLPTGDSVEPGLPVLAVVGRPNVGKSTLVNR 301 Query: 239 LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 + + A+V D PG TRD ++ + G I DT G ++ + + VE Sbjct: 302 VLGRREAVVQDTPGVTRDRVSYPAEWAGRRFTIVDTGGWEVDVAGLDAAVATQAEVAVEM 361 Query: 299 ADLILLL 305 AD +LL+ Sbjct: 362 ADAVLLV 368 >gi|309798864|ref|ZP_07693125.1| GTP-binding protein EngA [Streptococcus infantis SK1302] gi|308117513|gb|EFO54928.1| GTP-binding protein EngA [Streptococcus infantis SK1302] Length = 436 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 43/172 (25%), Positives = 80/172 (46%), Gaps = 44/172 (25%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRE 279 K ++G N GKSSL NA+ +D I + + GTTRD + D +G + DTAG+R+ Sbjct: 176 KFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDADGQEFTMIDTAGMRK 235 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336 + + EK + R ++ +D++L++ +N+++ I Sbjct: 236 SGKVYENTEKYSVMRAMRAIDRSDVVLMV--LNAEEGI---------------------- 271 Query: 337 EEYDHLISSF---TGEGLEELINKIKSI-------------LSNKFKKLPFS 372 EYD I+ F G+G+ ++NK ++ + +F+ LP++ Sbjct: 272 REYDKRIAGFAHEAGKGMIIVVNKWDTLEKDNHTMKNWEEDIREQFQYLPYA 323 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN +A + ++IV D+ G TRD + + + DT GI + D Sbjct: 6 VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRSFSMIDTGGIDDVD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + + +E AD+I+ + Sbjct: 66 APFMEQIKHQAEIAMEEADVIVFV 89 >gi|301307317|ref|ZP_07213328.1| hypothetical protein HMPREF9347_05886 [Escherichia coli MS 124-1] gi|300837492|gb|EFK65252.1| hypothetical protein HMPREF9347_05886 [Escherichia coli MS 124-1] Length = 205 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 4/108 (3%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L +S HI + L ++ R+ I I+G S AGKSSL NAL + +V V+D+ TR+V Sbjct: 17 LPYSLSRHILE-HLRKLTRHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 75 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305 L G+ + I+D G+ E+ D E E + R L DL+L L Sbjct: 76 RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 121 >gi|260072547|gb|ACX30447.1| Era/TrmE family GTP-binding protein [uncultured SUP05 cluster bacterium] gi|269468505|gb|EEZ80163.1| GTPase [uncultured SUP05 cluster bacterium] Length = 469 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 27/68 (39%), Positives = 38/68 (55%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G + +LG N GKS+L N + ++ + D+PGTTRD + I + EG + DTAGIR Sbjct: 178 GIAVAVLGRPNVGKSTLINRILGEERVLAIDMPGTTRDSIYIPFEREGQKYTLIDTAGIR 237 Query: 279 ETDDIVEK 286 EK Sbjct: 238 RKRSTHEK 245 Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 7/89 (7%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV----LTIDLDLEGYLVKISDTAGI 277 I ++G N GKS+LFN L+ A+V+D G TRD + +D D + + V I DT G+ Sbjct: 6 ISLVGRPNVGKSTLFNRLSNSRQALVSDFEGLTRDRQYAEILLDDDSQTF-VTIIDTGGL 64 Query: 278 RETDDIVEKEGIKRTFLE-VENADLILLL 305 D+IV+ GI+ L +E +D+I + Sbjct: 65 TGDDNIVD-SGIQGQVLNALEESDVIYFI 92 >gi|259419101|ref|ZP_05743018.1| ribosome-associated GTPase EngA [Silicibacter sp. TrichCH4B] gi|259345323|gb|EEW57177.1| ribosome-associated GTPase EngA [Silicibacter sp. TrichCH4B] Length = 492 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 51/168 (30%), Positives = 80/168 (47%), Gaps = 19/168 (11%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 + + I+G N GKS+LFN L K +A+V D PG TRD+ + L + D+AG+ + Sbjct: 3 FTLAIVGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDLREGEARLGDLRFTVIDSAGLED 62 Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD 330 TD+ +E + T VE AD+ L + + + EI K+ I KS+ Sbjct: 63 ATDNSLEGRMRRLTERAVEMADVCLFIIDARAGVTPTDEMFAEILRKKSAHVILAANKSE 122 Query: 331 LYST---YTEEYDH------LISSFTGEGLEELINKIKSILSNKFKKL 369 + E Y +S GEGL +L +++ + S KF+KL Sbjct: 123 GSAADAGVIEAYGLGLGEPIRMSGEHGEGLNDLYSELLPV-SEKFEKL 169 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 40/66 (60%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ ++G NAGKS+L N + +D + G TRD +++ +D G ++I DTAG+R+ Sbjct: 208 QVAVVGRPNAGKSTLINKILGEDRLLTGPEAGITRDAISLKIDWSGTPMRIFDTAGMRKK 267 Query: 281 DDIVEK 286 + EK Sbjct: 268 AKVQEK 273 >gi|227529194|ref|ZP_03959243.1| GTP-binding protein EngA [Lactobacillus vaginalis ATCC 49540] gi|227350919|gb|EEJ41210.1| GTP-binding protein EngA [Lactobacillus vaginalis ATCC 49540] Length = 437 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 52/89 (58%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN +A + ++IV D PG TRD + + G + DT GI +D Sbjct: 6 VAIVGRPNVGKSTLFNRIAGERISIVEDTPGVTRDRIYAHAEWLGKNFNLIDTGGIEISD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310 + + ++ + ++ AD+I+L+ +I + Sbjct: 66 QPLLTQIRQQAEVAIDEADVIVLVVDIQN 94 Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 51/86 (59%), Gaps = 4/86 (4%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDD 282 ++G N GKSSL NA+ ++ IV+++ GTTRD + +G + DTAGIR+ Sbjct: 179 LIGRPNVGKSSLVNAILGENRVIVSNVAGTTRDAINTRFTAKDGREFTMIDTAGIRKKGK 238 Query: 283 I---VEKEGIKRTFLEVENADLILLL 305 I E+ + R+ ++++D++L++ Sbjct: 239 IYENTERYSLMRSMRAIDDSDVVLVV 264 >gi|94989793|ref|YP_597893.1| GTP-binding protein EngA [Streptococcus pyogenes MGAS10270] gi|94993678|ref|YP_601776.1| GTP-binding protein EngA [Streptococcus pyogenes MGAS10750] gi|166225863|sp|Q1JIH4|DER_STRPD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|166225864|sp|Q1J8C9|DER_STRPF RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|94543301|gb|ABF33349.1| GTP-binding protein [Streptococcus pyogenes MGAS10270] gi|94547186|gb|ABF37232.1| GTP-binding protein [Streptococcus pyogenes MGAS10750] Length = 436 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 71/145 (48%), Gaps = 31/145 (21%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRETDD 282 ++G N GKSSL NA+ +D I + + GTTRD + D +G + DTAG+R++ Sbjct: 179 LIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDADGQEFTMIDTAGMRKSGK 238 Query: 283 I---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY 339 I EK + R ++ +D++L++ IN+++ I EY Sbjct: 239 IYENTEKYSVMRAMRAIDRSDVVLMV--INAEEGI----------------------REY 274 Query: 340 DHLISSF---TGEGLEELINKIKSI 361 D I+ F G+G+ ++NK ++ Sbjct: 275 DKRIAGFAHEAGKGMIIVVNKWDTL 299 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN +A + ++IV D+ G TRD + + + DT GI + D Sbjct: 6 VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRQFSLIDTGGIDDVD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + + +E AD+I+ + Sbjct: 66 APFMEQIKHQAQIAMEEADVIVFV 89 >gi|261749359|ref|YP_003257044.1| GTP-binding protein EngA [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497451|gb|ACX83901.1| GTP-binding protein EngA [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 439 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 3/85 (3%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 ++G N GKS+L N+ +K+ IVT++ GTTRD L + GY + DT G+R+ I Sbjct: 182 VIGRPNVGKSTLINSFLEKNHHIVTNVSGTTRDSLDVFCKKLGYKCILVDTPGVRKKSKI 241 Query: 284 ---VEKEGIKRTFLEVENADLILLL 305 +E RT +E+ D+ L+ Sbjct: 242 SESLEFYSTMRTVKSIESTDICFLM 266 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 78/162 (48%), Gaps = 20/162 (12%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 Y + I+G N GKS+LFN L + AIV G TRD + + + G + DT G Sbjct: 3 YIVSIVGRPNVGKSTLFNRLVGRRKAIVHVRSGVTRDRIYGESEWNGVHFSLVDTGGYNP 62 Query: 280 T-DDIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEIS-----FPKNIDFI----- 323 ++++ E IK+ + ++ AD+IL L +I ++ EIS + K I + Sbjct: 63 IHKNLLDAEIIKQILIAIKEADVILFLVDIKIGILDTDVEISQLLRKYKKYILLVVNKVD 122 Query: 324 ---FIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362 ++ +D + EY + IS+ G G EL++++ I Sbjct: 123 NGKYMYHNTDFFCLGFREY-YYISAINGSGTGELLDRLIEIF 163 >gi|91069954|gb|ABE10882.1| GTP-binding protein [uncultured Prochlorococcus marinus clone ASNC2259] Length = 457 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 3/85 (3%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 I+G N GKSSL N++ + AIV+DI GTT D + + KI DTAGIR ++ Sbjct: 181 IIGRPNVGKSSLLNSICGEKRAIVSDISGTTTDSIDTLIKKGDNHWKIIDTAGIRRKKNV 240 Query: 284 ---VEKEGIKRTFLEVENADLILLL 305 E GI R F ++ +D+ +L+ Sbjct: 241 KYGAEFFGINRAFKSIDRSDVCVLV 265 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/89 (38%), Positives = 47/89 (52%), Gaps = 1/89 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS+L N L + + AIV D PG TRD + G +I DT G+ D Sbjct: 6 IAIIGRPNVGKSTLVNRLCQSNDAIVFDKPGVTRDRTYQNASWGGKEFQIVDTGGLVFDD 65 Query: 282 DIVEKEGIK-RTFLEVENADLILLLKEIN 309 D I+ + FL +E + L LL+ + N Sbjct: 66 DSEFLPEIRTQVFLALEESSLALLVVDGN 94 >gi|315929184|gb|EFV08408.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni 305] Length = 67 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 40/62 (64%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I+++G N GKSSLFN +A++ +AI +DI GTTRD + + + D+ G+ E+D Sbjct: 4 IILIGKPNVGKSSLFNRMARQRIAITSDISGTTRDTNKTQIHIHSKKAMLIDSGGLDESD 63 Query: 282 DI 283 ++ Sbjct: 64 EL 65 >gi|182679273|ref|YP_001833419.1| GTP-binding protein EngA [Beijerinckia indica subsp. indica ATCC 9039] gi|182635156|gb|ACB95930.1| small GTP-binding protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 470 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 35/85 (41%), Positives = 45/85 (52%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET- 280 I I+G N GKS+LFN L K +A+V D PG TRD D L KI DTAG+ E Sbjct: 4 IAIIGRPNVGKSTLFNRLVGKKLALVDDRPGVTRDRREGDAKLGDLTFKIIDTAGLEEGH 63 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 ++ + +T +E AD I L Sbjct: 64 EETLSGRMRAQTEAAIEQADGIFFL 88 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 +I ++G NAGKS+L N L ++ + G TRD + +DL+ G +KI DTAG+R Sbjct: 197 RIAVVGRPNAGKSTLLNRLLGEERLLTGPEAGLTRDSIGLDLEWRGRKMKIFDTAGLRRR 256 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305 + +D +EK V A+++++L Sbjct: 257 AKIEDKLEKLAAADALRAVRFAEVVVVL 284 >gi|126695749|ref|YP_001090635.1| GTP-binding protein EngA [Prochlorococcus marinus str. MIT 9301] gi|166225836|sp|A3PBA9|DER_PROM0 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|126542792|gb|ABO17034.1| GTP-binding protein (HSR1-related) [Prochlorococcus marinus str. MIT 9301] Length = 457 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 3/85 (3%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 I+G N GKSSL N++ + AIV+DI GTT D + + KI DTAGIR ++ Sbjct: 181 IIGRPNVGKSSLLNSICGEKRAIVSDISGTTTDSIDTLIKKGDNHWKIIDTAGIRRKKNV 240 Query: 284 ---VEKEGIKRTFLEVENADLILLL 305 E GI R F ++ +D+ +L+ Sbjct: 241 KYGTEFFGINRAFKSIDRSDVCVLV 265 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 35/89 (39%), Positives = 47/89 (52%), Gaps = 1/89 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS+L N L + + AIV D PG TRD + G +I DT G+ D Sbjct: 6 IAIIGRPNVGKSTLVNRLCQSNDAIVFDKPGVTRDRTYQNASWGGKEFQIVDTGGLVFDD 65 Query: 282 DIVEKEGIK-RTFLEVENADLILLLKEIN 309 D I+ + FL +E A L LL+ + N Sbjct: 66 DSEFLPEIRTQVFLALEEASLALLVVDGN 94 >gi|320101768|ref|YP_004177359.1| ribosome-associated GTPase EngA [Isosphaera pallida ATCC 43644] gi|319749050|gb|ADV60810.1| ribosome-associated GTPase EngA [Isosphaera pallida ATCC 43644] Length = 547 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 49/88 (55%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI ++G N GKS+ N LA+++ IV+++ GTTRD + + +L+G DTAG+R Sbjct: 217 KIAVVGRPNTGKSTFINTLAQEERMIVSEVAGTTRDSVDVHFELDGLPFTAIDTAGVRRK 276 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLL 305 D ++ + R + +D+ LL Sbjct: 277 AKLRDSLDYFSLHRAQRSIRRSDVTLLF 304 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 21/36 (58%), Positives = 24/36 (66%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 K+ ++G N GKSSLFN L K VAIV PG TRD Sbjct: 5 KVAVVGRPNVGKSSLFNWLVGKRVAIVEPTPGVTRD 40 >gi|91069816|gb|ABE10748.1| GTP-binding protein [uncultured Prochlorococcus marinus clone ASNC1092] Length = 457 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 3/85 (3%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 I+G N GKSSL N++ + AIV+DI GTT D + + KI DTAGIR ++ Sbjct: 181 IIGRPNVGKSSLLNSICGEKRAIVSDISGTTTDSIDTLIKKGDNHWKIIDTAGIRRKKNV 240 Query: 284 ---VEKEGIKRTFLEVENADLILLL 305 E GI R F ++ +D+ +L+ Sbjct: 241 KYGTEFFGINRAFKSIDRSDVCVLV 265 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 35/89 (39%), Positives = 47/89 (52%), Gaps = 1/89 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS+L N L + + AIV D PG TRD + G +I DT G+ D Sbjct: 6 IAIIGRPNVGKSTLVNRLCQSNDAIVFDKPGVTRDRTYQNASWGGKEFQIVDTGGLVFDD 65 Query: 282 DIVEKEGIK-RTFLEVENADLILLLKEIN 309 D I+ + FL +E A L LL+ + N Sbjct: 66 DSEFLPQIRTQVFLALEEASLALLVVDGN 94 >gi|84684686|ref|ZP_01012586.1| GTP-binding protein EngA [Maritimibacter alkaliphilus HTCC2654] gi|84667021|gb|EAQ13491.1| GTP-binding protein EngA [Rhodobacterales bacterium HTCC2654] Length = 481 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/87 (39%), Positives = 48/87 (55%), Gaps = 1/87 (1%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 + + I+G N GKS+LFN L K +A+V + PG TRD+ + L + DTAG+ + Sbjct: 3 FTLAIVGRPNVGKSTLFNRLVGKRLALVDNQPGVTRDLREGEARLGEMRFTVIDTAGLED 62 Query: 280 -TDDIVEKEGIKRTFLEVENADLILLL 305 TDD +E + T VE AD L L Sbjct: 63 ATDDSLEGRMRRLTERAVEMADACLFL 89 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 39/66 (59%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ ++G NAGKS+L N L ++ + G TRD +++ D +G +I DTAG+R+ Sbjct: 195 QVAVIGRPNAGKSTLINRLIGEERLLTGPEAGITRDSISLAFDWDGTPTRIFDTAGMRKK 254 Query: 281 DDIVEK 286 + EK Sbjct: 255 AKVQEK 260 >gi|291526958|emb|CBK92544.1| iron-only hydrogenase maturation protein HydF [Eubacterium rectale M104/1] Length = 438 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 37/105 (35%), Positives = 61/105 (58%), Gaps = 7/105 (6%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDTA 275 N I I G +N+GKSSL NA+ K++V+IV D+ GTT D + +++ G V I DTA Sbjct: 11 NRLHIGIYGKTNSGKSSLINAVTKQEVSIVADVAGTTTDPVYKSMEIHPLGPCV-IIDTA 69 Query: 276 GIRETDDIVEKEGIKRTFLEVENADL---ILLLKEINSKKEISFP 317 G + ++ E+ +++T L E D+ +L + E+ + K+ P Sbjct: 70 GFDDDSELGERR-VEKTHLAAEKTDIAVVVLDIAEVIAAKKAGVP 113 >gi|68171706|ref|ZP_00545063.1| Small GTP-binding protein domain:GTP-binding [Ehrlichia chaffeensis str. Sapulpa] gi|88657837|ref|YP_507319.1| GTP-binding protein EngA [Ehrlichia chaffeensis str. Arkansas] gi|67998875|gb|EAM85570.1| Small GTP-binding protein domain:GTP-binding [Ehrlichia chaffeensis str. Sapulpa] gi|88599294|gb|ABD44763.1| GTP-binding protein EngA [Ehrlichia chaffeensis str. Arkansas] Length = 442 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 28/88 (31%), Positives = 50/88 (56%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G NAGKS+ N L ++ IV+ PGTTRD + ++ G + DTAG+R+ Sbjct: 175 KLSIVGRPNAGKSTFINRLLAENRMIVSPEPGTTRDSIDVEYTYRGQKFTLIDTAGMRKK 234 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E + +T + +D+++L+ Sbjct: 235 AKVTESIEVTSVHKTIESINRSDIVILM 262 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 29/60 (48%), Positives = 36/60 (60%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI I+G N GKS++FN L + AIV++IP TRD D DL G KI DT G+ T Sbjct: 3 KIAIVGLPNVGKSTIFNRLTSQKSAIVSNIPNLTRDRREGDADLCGLKFKIVDTGGVDNT 62 >gi|224535653|ref|ZP_03676192.1| hypothetical protein BACCELL_00517 [Bacteroides cellulosilyticus DSM 14838] gi|224522726|gb|EEF91831.1| hypothetical protein BACCELL_00517 [Bacteroides cellulosilyticus DSM 14838] Length = 407 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 75/166 (45%), Gaps = 19/166 (11%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDTA 275 N I + G N+GKSSL NAL +D IV+ PGTT D +T +++ G + I DT Sbjct: 22 NRLHIALFGRRNSGKSSLVNALTGQDTVIVSPTPGTTTDPVTKAMEIHPLGPCLLI-DTP 80 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF-----PKNIDFIFIGTKSD 330 G + ++ E ++RT + D+ LLL E +E + + I I + K+D Sbjct: 81 GFDDEGELGEMR-VERTLKIIGKTDIALLLCETGDAQEQEWLQRLKERGIPVILLLNKAD 139 Query: 331 LYSTYTEEYDH----------LISSFTGEGLEELINKIKSILSNKF 366 TE + ++S+ G G+E + I L F Sbjct: 140 ARPNTTELAEQIKASCGQPPIIVSAKDGTGIEAIHRAILEKLPADF 185 >gi|330686012|gb|EGG97635.1| ribosome biogenesis GTPase Der [Staphylococcus epidermidis VCU121] Length = 436 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 28/88 (31%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSL NA+ ++ IV+++ GTTRD + + +G + DTAG+R+ Sbjct: 177 RLSIIGRPNVGKSSLVNAILGEERVIVSNVAGTTRDAVDTEYSYDGQDYVLIDTAGMRKK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + EK + R +E ++++L++ Sbjct: 237 GKVYESTEKYSVLRALKAIERSNVVLVV 264 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 45/84 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN + + V+IV D PG TRD + + + I DT GI D Sbjct: 6 VAIVGKPNVGKSTIFNRVVGERVSIVEDTPGVTRDRIYSSGEWLTHEFNIIDTGGIEIGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + + + +E AD+I+ + Sbjct: 66 APFQTQIRAQAEIAIEEADVIVFM 89 >gi|239623754|ref|ZP_04666785.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239521785|gb|EEQ61651.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 442 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 32/91 (35%), Positives = 53/91 (58%), Gaps = 7/91 (7%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID---LDLEGYLVKISDTAGIR 278 + I+G N GKS+LFN +A ++IV D PG TRD + D LD+ L+ DT GI Sbjct: 6 VAIVGRPNVGKSTLFNVIAGDTISIVKDTPGVTRDRIYADCTWLDMNFTLI---DTGGIE 62 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEI 308 +T DI+ + ++ + + AD+I+ + ++ Sbjct: 63 PDTKDIILSQMREQAEIAISTADVIIFIVDV 93 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/102 (34%), Positives = 53/102 (51%), Gaps = 3/102 (2%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L +++ H K+ E + +I ++G N GKSS+ N L ++ IV+DI GTTRD + Sbjct: 157 LLDEVVKHFDGEKIEEEEDDRPRIAVVGKPNVGKSSIINKLLGENRVIVSDIAGTTRDAV 216 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVE 297 ++ G DTAG+R I +E+ I RT VE Sbjct: 217 DTEIVYNGTPYVFIDTAGLRRKSRIKEELERYSIIRTVTAVE 258 >gi|270156684|ref|ZP_06185341.1| putative GTP-binding protein EngA [Legionella longbeachae D-4968] gi|289164869|ref|YP_003455007.1| GTPase involved in ribosome synthesis and maintenance [Legionella longbeachae NSW150] gi|269988709|gb|EEZ94963.1| putative GTP-binding protein EngA [Legionella longbeachae D-4968] gi|288858042|emb|CBJ11902.1| GTPase involved in ribosome synthesis and maintenance [Legionella longbeachae NSW150] Length = 466 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 3/92 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI G N GKS+L N + ++ +V D+PGTTRD + I + + DTAG+R Sbjct: 176 KIAFAGRPNVGKSTLINRILGEERVVVYDMPGTTRDSIAIPFARDNQQYVLIDTAGVRRK 235 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLLKEIN 309 D+ +EK + +T +E +++ L L + N Sbjct: 236 SRIDEKIEKFSVIKTLKAIEESNVCLQLLDAN 267 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 43/84 (51%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L K A+V D PG TRD + + DT GI D Sbjct: 5 IALVGRPNVGKSTLFNKLTKTQDALVADYPGLTRDRQYGQAQHDDKHYIVVDTGGIGIDD 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 V+ K++ + + AD++L L Sbjct: 65 IAVDSLMSKQSEIALHEADIVLFL 88 >gi|218692698|ref|YP_002400910.1| hypothetical protein ECED1_5176 [Escherichia coli ED1a] gi|218430262|emb|CAR11129.1| conserved hypothetical protein with GTPase domain [Escherichia coli ED1a] Length = 303 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 4/108 (3%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L +S HI + L ++ R+ I I+G S AGKSSL NAL + ++ V+D+ TR+V Sbjct: 30 LPYSLSRHILE-HLRKLTRHEPVIGIMGKSGAGKSSLCNALFQGEITPVSDVHAGTREVQ 88 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305 L GY + I+D G+ E+ D E E + R L DL+L L Sbjct: 89 RFRLSGHGYSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 134 >gi|154248944|ref|YP_001409769.1| small GTP-binding protein [Fervidobacterium nodosum Rt17-B1] gi|154152880|gb|ABS60112.1| small GTP-binding protein [Fervidobacterium nodosum Rt17-B1] Length = 403 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 48/168 (28%), Positives = 86/168 (51%), Gaps = 20/168 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280 I I+G N GKSS NAL ++++IV+D PGTT D + ++L V + DT G+ + Sbjct: 11 ISIVGRRNVGKSSFMNALTGQEISIVSDTPGTTTDPVHKAMELYPLGPVTLIDTPGLDDV 70 Query: 281 DDIVEKEGIKRTFLEVENADL-ILLLKEINSKKEISFPK-----NIDFIFIGTKSDLY-- 332 ++ EK +++ +D IL++ + + E+ K I FI + KSD+ Sbjct: 71 GELGEKR-VEKAIKAFYKSDAGILVVDDFPHEYEMKIKKLFDELEIPFIVVVNKSDILGE 129 Query: 333 --STYTEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLPF 371 + +EY+ + +SS +G EE+ + SI+ + +++PF Sbjct: 130 KANEIAKEYEKIFSVPVFVVSSLGRQGFEEIGKTLNSIIPSD-EEIPF 176 >gi|227543422|ref|ZP_03973471.1| GTP-binding protein EngA [Lactobacillus reuteri CF48-3A] gi|300910088|ref|ZP_07127548.1| ribosome-associated GTPase EngA [Lactobacillus reuteri SD2112] gi|227186601|gb|EEI66672.1| GTP-binding protein EngA [Lactobacillus reuteri CF48-3A] gi|300892736|gb|EFK86096.1| ribosome-associated GTPase EngA [Lactobacillus reuteri SD2112] Length = 440 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 40/156 (25%), Positives = 75/156 (48%), Gaps = 21/156 (13%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN +A + ++IV D PG TRD + + G + DT GI +D Sbjct: 9 VAVVGRPNVGKSTLFNRIAGERISIVEDTPGVTRDRIYAHAEWLGKHFSMIDTGGIEISD 68 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTK----- 328 + + ++ + ++ AD+I+ + ++ + I + N + K Sbjct: 69 QPLLTQIRQQAEVAIDEADVIIFVADVENGVTDADEQVARILYRSNKPVVLAVNKVDNPE 128 Query: 329 --SDLYSTYT----EEYDHLISSFTGEGLEELINKI 358 SD+Y Y+ E Y +SS G G+ +L++ + Sbjct: 129 RRSDIYDYYSLGLGEPY--AVSSVHGIGMGDLLDAV 162 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 51/85 (60%), Gaps = 4/85 (4%) Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDI 283 +G N GKSSL NA+ ++ IV+++ GTTRD + + +G + DTAGIR+ I Sbjct: 183 IGRPNVGKSSLVNAILGENRVIVSNVAGTTRDAINTQFETADGQKFTMVDTAGIRKKGKI 242 Query: 284 ---VEKEGIKRTFLEVENADLILLL 305 E+ + R+ ++++D++L++ Sbjct: 243 YENTERYSLMRSMRAIDDSDVVLVV 267 >gi|319408190|emb|CBI81843.1| GTP-binding protein [Bartonella schoenbuchensis R1] Length = 469 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 36/109 (33%), Positives = 60/109 (55%), Gaps = 4/109 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280 I I+G N GKS+LFN L + +A+V + PG TRD + L+ + DTAG+ + + Sbjct: 5 IAIVGRPNVGKSTLFNRLVGQKLALVDNKPGVTRDRRVHEARLQDLRFNVIDTAGLEDAS 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKS 329 D +E +T ++ ADLIL + +++K ++ P + F + KS Sbjct: 65 DQTLEGRMFFQTKAAIKEADLILFV--LDAKSGVT-PSDCSFASLVRKS 110 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 37/66 (56%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I I G N GKS+L N++ +D + G TRD +++D + G K+ DTAG+R Sbjct: 206 RIAIAGRPNTGKSTLINSMLGQDRLLTGPEAGITRDSISVDWEWRGRCFKLFDTAGLRRK 265 Query: 281 DDIVEK 286 + EK Sbjct: 266 LKVQEK 271 >gi|309389060|gb|ADO76940.1| ribosome-associated GTPase EngA [Halanaerobium praevalens DSM 2228] Length = 438 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 3/87 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKSSL N L K IV+D+PGTTRD + + + DTAG+R Sbjct: 180 IAVIGKPNVGKSSLVNHLIGKKRVIVSDMPGTTRDAVDTMIKWKDISFNFIDTAGLRRKS 239 Query: 282 DI---VEKEGIKRTFLEVENADLILLL 305 + VE R V+ AD +L++ Sbjct: 240 RVKEDVEYYSNLRALRSVDRADAVLMM 266 Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust. Identities = 32/85 (37%), Positives = 44/85 (51%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN L AIV P TRD + + + G + DT GI D Sbjct: 6 VAIVGRPNVGKSTLFNRLVGGRRAIVEGEPNVTRDRIYGETEWLGKKFNVIDTGGIVLHD 65 Query: 282 DIVEKEGIK-RTFLEVENADLILLL 305 + K IK + + +E ADLIL + Sbjct: 66 NDKIKNQIKYQAEIAMEEADLILFV 90 >gi|315652318|ref|ZP_07905310.1| GTP-binding protein [Eubacterium saburreum DSM 3986] gi|315485441|gb|EFU75831.1| GTP-binding protein [Eubacterium saburreum DSM 3986] Length = 408 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 63/118 (53%), Gaps = 10/118 (8%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280 I I G N GKSSL NA+ +D+AIV+DI GTT D + ++L + V I DT G+ + Sbjct: 25 IAIFGCCNVGKSSLINAITSQDIAIVSDISGTTTDPVKKSMELLPFGPVVIIDTPGLDDK 84 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPKNID-----FIFIGTKSD 330 + ++++ + ADLIL + + + S EI F I ++ +G KSD Sbjct: 85 STLGALR-VEKSLEYINQADLILFVVDASNETSPDEIEFLDKIKSNEKRYLVVGNKSD 141 >gi|238922661|ref|YP_002936174.1| GTP-binding protein EngA [Eubacterium rectale ATCC 33656] gi|238874333|gb|ACR74040.1| GTP-binding protein EngA [Eubacterium rectale ATCC 33656] Length = 454 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 37/105 (35%), Positives = 61/105 (58%), Gaps = 7/105 (6%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDTA 275 N I I G +N+GKSSL NA+ K++V+IV D+ GTT D + +++ G V I DTA Sbjct: 27 NRLHIGIYGKTNSGKSSLINAVTKQEVSIVADVAGTTTDPVYKPMEIHPLGPCV-IIDTA 85 Query: 276 GIRETDDIVEKEGIKRTFLEVENADL---ILLLKEINSKKEISFP 317 G + ++ E+ +++T L E D+ +L + E+ + K+ P Sbjct: 86 GFDDDSELGERR-VEKTHLAAEKTDIAVVVLDIAEVIAAKKAGVP 129 >gi|183601656|ref|ZP_02963026.1| bifunctional cytidylate kinase/GTP-binding protein [Bifidobacterium animalis subsp. lactis HN019] gi|241190845|ref|YP_002968239.1| bifunctional cytidylate kinase/GTP-binding protein [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196251|ref|YP_002969806.1| bifunctional cytidylate kinase/GTP-binding protein [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183219262|gb|EDT89903.1| bifunctional cytidylate kinase/GTP-binding protein [Bifidobacterium animalis subsp. lactis HN019] gi|240249237|gb|ACS46177.1| bifunctional cytidylate kinase/GTP-binding protein [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250805|gb|ACS47744.1| bifunctional cytidylate kinase/GTP-binding protein [Bifidobacterium animalis subsp. lactis DSM 10140] gi|289178585|gb|ADC85831.1| EngA [Bifidobacterium animalis subsp. lactis BB-12] gi|295793834|gb|ADG33369.1| bifunctional cytidylate kinase/GTP-binding protein [Bifidobacterium animalis subsp. lactis V9] Length = 710 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 43/177 (24%), Positives = 78/177 (44%), Gaps = 19/177 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+L N + + A+V D PG TRD ++ D + G K+ DT G Sbjct: 276 IAVVGRPNVGKSTLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADV 335 Query: 282 DIVEKEGIKRTFLEVENAD------------------LILLLKEINSKKEISFPKNIDFI 323 + ++ + + VE AD ++ LL++ ++ K D I Sbjct: 336 EGIDSAIASQAQIAVELADSVIFVVDALTGLTQTDERIVKLLRQAGKPVTVAVNKIDDQI 395 Query: 324 FIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380 ++ + E + IS+ G G+ +L+++ + + + K F PSH R + Sbjct: 396 SEYMAAEFWKLGLGE-PYPISAMHGRGVGDLLDEAVAQMKSAEKTSGFLTPSHLRRV 451 Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 7/90 (7%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT--IDLDLEGYLVKISDTAGIR 278 ++ ++G N GKSSL N L+ + ++V ++ GTTRD + + +D E YL DTAGI+ Sbjct: 450 RVALVGRPNVGKSSLLNQLSHSERSVVNELAGTTRDPVDEIVTIDGEDYL--FIDTAGIK 507 Query: 279 ETDDIV---EKEGIKRTFLEVENADLILLL 305 + E RT +E ++L L+L Sbjct: 508 RRQHKLSGAEYYSSLRTQAAIERSELALVL 537 >gi|149200553|ref|ZP_01877562.1| GTP-binding protein [Lentisphaera araneosa HTCC2155] gi|149136350|gb|EDM24794.1| GTP-binding protein [Lentisphaera araneosa HTCC2155] Length = 487 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 39/117 (33%), Positives = 60/117 (51%), Gaps = 13/117 (11%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L+ DI S+ + +I + G N GKSS+ N L +D IV+DI GTTRD + Sbjct: 167 LREDICSYFPPTDEEDEASPDLRITLAGRPNVGKSSIANRLLGEDRVIVSDIAGTTRDAV 226 Query: 259 TIDLDLE-------GYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLILLL 305 I + G LV DTAG+++ D++VEK + RT ++ + +IL + Sbjct: 227 DIPFSFDDEGESRNGLLV---DTAGVKKAGKIDNLVEKFSMMRTEEAIKRSTVILFV 280 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 33/94 (35%), Positives = 53/94 (56%), Gaps = 9/94 (9%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKSSLFN L +K +AIV + G TRD + + GY ++ DT G+ Sbjct: 13 VTIVGRPNVGKSSLFNTLLRKRIAIVHEQCGVTRDRVAQPVSWNGYRYQLVDTGGLGVLS 72 Query: 282 DIVEK------EGIKRTF-LEVENADLILLLKEI 308 D EK E I+ + VE++D++++L ++ Sbjct: 73 D--EKNVEFMDEKIRMQLKVAVESSDILIMLTDV 104 >gi|154253924|ref|YP_001414748.1| small GTP-binding protein [Parvibaculum lavamentivorans DS-1] gi|171769688|sp|A7HYV8|DER_PARL1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|154157874|gb|ABS65091.1| small GTP-binding protein [Parvibaculum lavamentivorans DS-1] Length = 473 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 36/90 (40%), Positives = 49/90 (54%), Gaps = 7/90 (7%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 +K+ I+G N GKS+LFN L K +A+V D PG TRD + L I DTAG+ E Sbjct: 3 FKVAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRREGEARLGDLSFTIIDTAGLEE 62 Query: 280 ----TDDIVEKEGIKRTFLEVENADLILLL 305 T + + G +R + +ADL LLL Sbjct: 63 AATGTLEARMRIGTERA---IADADLCLLL 89 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKS+L N L +D + G TRD + I+ + G VK+ DTAG+R Sbjct: 204 RVAIIGRPNVGKSTLVNQLLGEDRMLTGPEAGITRDSIGIEWEWRGRRVKLWDTAGMRRR 263 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +EK + T V A+++++L Sbjct: 264 ARVTEKLEKLSVADTLRAVRFAEVVVIL 291 >gi|300776276|ref|ZP_07086134.1| ribosome-associated GTPase EngA [Chryseobacterium gleum ATCC 35910] gi|300501786|gb|EFK32926.1| ribosome-associated GTPase EngA [Chryseobacterium gleum ATCC 35910] Length = 436 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI I G N GKS+L NAL + IVTDI GTTRD + + G+ + DTAG+R Sbjct: 177 KITIAGRPNVGKSTLTNALLDVERNIVTDIAGTTRDSIQTLYNKFGHEFVLVDTAGMRRK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +E + R+ +E +D+++++ Sbjct: 237 SKVNEDLEFYSVMRSIRSIEYSDVVIIM 264 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 45/88 (51%), Gaps = 1/88 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFN L ++ AIV G TRD D G + DT G T Sbjct: 5 VAIVGRPNVGKSTLFNRLLERREAIVDSTAGVTRDRHYGKSDWNGVDFTVIDTGGYDVGT 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308 DDI E+E K+ L V+ A I+ + + Sbjct: 65 DDIFEEEIRKQVQLAVDEATSIIFMMNV 92 >gi|123967979|ref|YP_001008837.1| GTP-binding protein EngA [Prochlorococcus marinus str. AS9601] gi|166225839|sp|A2BPL9|DER_PROMS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|123198089|gb|ABM69730.1| GTP-binding protein (HSR1-related) [Prochlorococcus marinus str. AS9601] Length = 457 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 3/85 (3%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 I+G N GKSSL N++ + AIV+DI GTT D + + KI DTAGIR ++ Sbjct: 181 IIGRPNVGKSSLLNSICGEKRAIVSDISGTTTDSIDTLIKKGDNNWKIIDTAGIRRKKNV 240 Query: 284 ---VEKEGIKRTFLEVENADLILLL 305 E GI R F ++ +D+ +L+ Sbjct: 241 KYGTEFFGINRAFKSIDRSDVCVLV 265 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 34/89 (38%), Positives = 47/89 (52%), Gaps = 1/89 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS+L N L + + AIV D PG TRD + G +I DT G+ D Sbjct: 6 IAIIGRPNVGKSTLVNRLCQSNDAIVFDKPGVTRDRTYQNASWGGKEFQIVDTGGLVFDD 65 Query: 282 DIVEKEGIK-RTFLEVENADLILLLKEIN 309 + I+ + FL +E A L LL+ + N Sbjct: 66 ESEFLPEIRTQVFLALEEASLALLVVDGN 94 >gi|145219270|ref|YP_001129979.1| GTP-binding protein EngA [Prosthecochloris vibrioformis DSM 265] gi|189037154|sp|A4SDB8|DER_PROVI RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|145205434|gb|ABP36477.1| small GTP-binding protein [Chlorobium phaeovibrioides DSM 265] Length = 436 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 47/86 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN + ++ AIV PG TRD + +G ++ DT G D Sbjct: 5 IALVGRPNVGKSTLFNRILRERAAIVDSTPGVTRDRHISEGFWQGRAFRLMDTGGYAPED 64 Query: 282 DIVEKEGIKRTFLEVENADLILLLKE 307 ++ +++T + +AD+++ + + Sbjct: 65 GVISNAMLEQTMTAINDADIVVFVAD 90 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ ++G N GKSS NAL + IV+DIPGTTRD + + DTAG+R+ Sbjct: 178 RLAVVGRPNVGKSSFVNALLGNNRQIVSDIPGTTRDAIDTRFTRNQQDFLLIDTAGLRKR 237 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 I +E R+ +E ++++++ Sbjct: 238 TKISAGIEYYSSLRSEKAIERCEVVMVM 265 >gi|323705546|ref|ZP_08117120.1| small GTP-binding protein [Thermoanaerobacterium xylanolyticum LX-11] gi|323535023|gb|EGB24800.1| small GTP-binding protein [Thermoanaerobacterium xylanolyticum LX-11] Length = 411 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 56/172 (32%), Positives = 87/172 (50%), Gaps = 33/172 (19%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAGIRET 280 I I G NAGKSS+ NAL +++AIV+D+ GTT D + ++ L V I DTAG+ +T Sbjct: 12 ISIFGRRNAGKSSIINALTNQNIAIVSDVAGTTTDPVHKAMEILPIGPVVIIDTAGLDDT 71 Query: 281 DDIVEKEGIKRTFLEVENADLILLL-----------KEINSKKEISFPKNIDFIFIGTKS 329 ++ E +K+T+ + DL LL+ +EI K KNI + + K+ Sbjct: 72 GELGELR-VKKTYEVLNRTDLALLVIDGMVGPSKFEEEILDKIR---EKNIPVVGVLNKA 127 Query: 330 DLYS-TYTEEYD-------HLI--SSFTGEGLEELINKIKSILSNKFKKLPF 371 DL + ++ D L+ S+ +G G+EEL +I KK P+ Sbjct: 128 DLAQFNFIQKADWEKRLKLELVETSANSGYGIEELKRQI-------IKKAPY 172 >gi|118602671|ref|YP_903886.1| small GTP-binding protein [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567610|gb|ABL02415.1| small GTP-binding protein [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 465 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 3/90 (3%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G + +LG N GKS+L N + ++ +V D PGTT D + I + EG DTAGIR Sbjct: 178 GITVAVLGRPNVGKSTLINRILGQERVLVMDFPGTTHDSIYIPFEHEGQKYTFIDTAGIR 237 Query: 279 E---TDDIVEKEGIKRTFLEVENADLILLL 305 T + VE I + +E A +++L+ Sbjct: 238 RKRSTHEKVEIFSIIKAIDALERAHVVILV 267 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 5/88 (5%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV----LTIDLDLEGYLVKISDTAGI 277 I ++G N GKS+LFN L+ A+V+D G TRD + +D D + + I DT G+ Sbjct: 6 ICLVGRPNVGKSTLFNRLSHSRQALVSDFEGLTRDRQYAEVLLDNDTQTF-ATIIDTGGL 64 Query: 278 RETDDIVEKEGIKRTFLEVENADLILLL 305 +++V+ + +E +D+I + Sbjct: 65 TNKNNLVDSSIQGQVLNALEESDIIYFI 92 >gi|319400824|gb|EFV89043.1| small GTP-binding domain protein [Staphylococcus epidermidis FRI909] Length = 436 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 28/88 (31%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSL NA+ ++ IV+++ GTTRD + + +G + DTAG+R+ Sbjct: 177 RLSIIGRPNVGKSSLVNAILGEERVIVSNVAGTTRDAIDTEYSYDGQDYVLIDTAGMRKK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + EK + R +E ++++L++ Sbjct: 237 GKVYESTEKYSVLRALKAIERSEVVLVV 264 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 45/84 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN + + V+IV D PG TRD + + + I DT GI D Sbjct: 6 VAIVGKPNVGKSTIFNRVVGERVSIVEDTPGVTRDRIYSSGEWLTHEFNIIDTGGIEIGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + + + +E AD+I+ + Sbjct: 66 APFQTQIRAQAEIAIEEADVIIFM 89 >gi|153954948|ref|YP_001395713.1| HydF [Clostridium kluyveri DSM 555] gi|219855393|ref|YP_002472515.1| hypothetical protein CKR_2050 [Clostridium kluyveri NBRC 12016] gi|146347806|gb|EDK34342.1| HydF [Clostridium kluyveri DSM 555] gi|219569117|dbj|BAH07101.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 413 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 57/177 (32%), Positives = 90/177 (50%), Gaps = 41/177 (23%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGIRE 279 I + G NAGKSS+ NA+ +D+AIV+ + GTT D + +I++ G V I DTAG+ + Sbjct: 14 ITLFGRRNAGKSSIINAITGQDIAIVSSVKGTTTDPVYKSIEILPIGPCV-IIDTAGLDD 72 Query: 280 TDDIVEKEGIKRTFLEVEN-ADLIL---------------LLKEINSKKEISFPKNIDFI 323 + + E K+ LEV N D+ L ++ EI SKK I F+ Sbjct: 73 SGQLGELR--KKKTLEVLNKTDISLVVIDSTVGITEYDRYIIDEIKSKK-------IPFM 123 Query: 324 FIGTKSDLYSTYTEEYDHL----------ISSFTGEGLEELINKIKSILS---NKFK 367 I K D+ + ++ ++ +S+ TG+G++EL N+I IL +KFK Sbjct: 124 GILNKWDISNIDEKDIKNIKEELDIPLIAVSAVTGKGIKELKNQIAGILPKEEDKFK 180 >gi|94267274|ref|ZP_01290827.1| Small GTP-binding protein domain:GTP-binding [delta proteobacterium MLMS-1] gi|93452066|gb|EAT02754.1| Small GTP-binding protein domain:GTP-binding [delta proteobacterium MLMS-1] Length = 453 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ +G N GKSSL N L + +V+++PGTTRD + L ++ DTAGIR Sbjct: 190 RVAFIGRPNVGKSSLINRLLGSERMVVSEVPGTTRDSVDSLLIRGEKQYRLIDTAGIRRK 249 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + VEK + R +E DL LL+ Sbjct: 250 GKVRESVEKFSVMRALAALERCDLALLV 277 Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust. Identities = 45/145 (31%), Positives = 67/145 (46%), Gaps = 17/145 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKSSLFN +A AIV PG TRD + + DT GI E D Sbjct: 10 VALVGRPNVGKSSLFNRIAGGRKAIVDPTPGVTRDRHYQQVSWNQRHFMLIDTGGI-EGD 68 Query: 282 DIVEKEGIKRTFLE-----VENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTY- 335 E I R E V AD+ILLL +++++ ++ P + + I +S Y Sbjct: 69 KSSEVP-INRLIGEQSRQAVAEADVILLL--LDARQGVT-PDDYQVVEILRRSGKPVHYL 124 Query: 336 ------TEEYDHLISSFTGEGLEEL 354 E+ D L+ +F G+ +L Sbjct: 125 VNKIDAPEQVDKLLPTFYELGVPQL 149 >gi|50954356|ref|YP_061644.1| GTP-binding protein EngA [Leifsonia xyli subsp. xyli str. CTCB07] gi|71648669|sp|Q6AGF6|DER_LEIXX RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|50950838|gb|AAT88539.1| GTP-binding protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 481 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 53/208 (25%), Positives = 97/208 (46%), Gaps = 34/208 (16%) Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250 ++L+ IL D+S+ +++ ++G ++ ILG N GKSSL N A ++ +V ++ Sbjct: 197 DLLDKILKALPDVSA-VAKQEVG----GPRRVAILGRPNVGKSSLLNKAAGEERVVVNEL 251 Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIR---------------ETDDIVEKEGIKRTFLE 295 GTTRD + ++L G + + DTAGIR T +EK + L+ Sbjct: 252 AGTTRDPVDEQVELGGRVWRFVDTAGIRRRVHLQQGADFYASLRTSTALEKAEVAVVVLD 311 Query: 296 V------ENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------- 342 V ++ +I L+ E ++F K D + + L ++ H+ Sbjct: 312 VSQPISEQDVRIIDLVLESGRALVLAFNK-WDLLDDERRRYLEREIEQDLAHVSWAPRVN 370 Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLP 370 IS+ TG LE+L+ ++ L + ++P Sbjct: 371 ISARTGRHLEKLVPALERALESWETRIP 398 Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust. Identities = 37/161 (22%), Positives = 71/161 (44%), Gaps = 19/161 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+L N + + A+V D PG TRD ++ + G + DT G Sbjct: 49 LAIVGRPNVGKSALVNRILGRREAVVEDTPGVTRDRVSYRAEWNGRRFTVVDTGGWEPDA 108 Query: 282 DIVEKEGIKRTFLEVENADLIL------------------LLKEINSKKEISFPKNIDFI 323 ++ + + ++ AD ++ LL++ + ++ K D Sbjct: 109 RGIDASVAAQAEVAIDLADAVMFVVDAMVGATSTDEHVVRLLRKSDKPVFLAANKVDDAR 168 Query: 324 FIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364 + ++L+S E H +S+ G G+ +L++KI L + Sbjct: 169 QEPSATELWSLGLGE-PHPVSALHGRGVADLLDKILKALPD 208 >gi|103487684|ref|YP_617245.1| GTP-binding protein EngA [Sphingopyxis alaskensis RB2256] gi|98977761|gb|ABF53912.1| Small GTP-binding protein domain [Sphingopyxis alaskensis RB2256] Length = 456 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 51/160 (31%), Positives = 75/160 (46%), Gaps = 20/160 (12%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS+LFN L K +A+V D PG TRD D L G +I DTAG E Sbjct: 7 IAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDRREGDGKLLGLEFRIVDTAGF-EDQ 65 Query: 282 DIVEKEGIKRTFLE--VENADLILLLKEINS-----KKEIS---FPKNIDFIFIGTKSD- 330 D G R E V AD L L + + +EI+ ++ I K++ Sbjct: 66 DAATLPGRMRAQTEKAVREADAALFLIDARAGVTPLDEEIARWLRSEDTPVILCANKAEG 125 Query: 331 ------LYSTYTEEYDHL--ISSFTGEGLEELINKIKSIL 362 L Y+ ++ + +S+ GEGL +L + ++ I+ Sbjct: 126 KQGEAGLMEAYSLGFETVFALSAEHGEGLVDLFDALRPIV 165 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 7/92 (7%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL----DLEGYLVKISDTAG 276 K+ I+G NAGKS+L N + +D I G TRD + +D D E + +++ DTAG Sbjct: 188 KLAIVGRPNAGKSTLINRMIGEDRLITGPEAGITRDSIRVDWRWEKDGEVHEIQLFDTAG 247 Query: 277 IR---ETDDIVEKEGIKRTFLEVENADLILLL 305 +R + D +EK + V+ A++++LL Sbjct: 248 MRKRAKVQDKLEKLSVADALHAVDFAEVVVLL 279 >gi|291526461|emb|CBK92048.1| iron-only hydrogenase maturation protein HydF [Eubacterium rectale DSM 17629] Length = 458 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 37/105 (35%), Positives = 61/105 (58%), Gaps = 7/105 (6%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDTA 275 N I I G +N+GKSSL NA+ K++V+IV D+ GTT D + +++ G V I DTA Sbjct: 31 NRLHIGIYGKTNSGKSSLINAVTKQEVSIVADVAGTTTDPVYKPMEIHPLGPCV-IIDTA 89 Query: 276 GIRETDDIVEKEGIKRTFLEVENADL---ILLLKEINSKKEISFP 317 G + ++ E+ +++T L E D+ +L + E+ + K+ P Sbjct: 90 GFDDDSELGERR-VEKTHLAAEKTDIAVVVLDIAEVIAAKKAGVP 133 >gi|260655278|ref|ZP_05860766.1| ribosome-associated GTPase EngA [Jonquetella anthropi E3_33 E1] gi|260629726|gb|EEX47920.1| ribosome-associated GTPase EngA [Jonquetella anthropi E3_33 E1] Length = 440 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 KI ++G N GKSS+ N LA +D ++V+D+ GTTRD + + +I DTAG+R Sbjct: 176 KIALVGRPNCGKSSILNRLAGEDRSLVSDVAGTTRDAIDWETAQNSRTFRIVDTAGLRR 234 Score = 43.9 bits (102), Expect = 0.046, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 32/61 (52%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKSSLFN L AIV D PG TRD L ++ + DT G+ D Sbjct: 4 VSIVGRPNVGKSSLFNRLVGSRRAIVDDQPGVTRDRLFGRVEWGDRSFYLVDTGGLLLRD 63 Query: 282 D 282 D Sbjct: 64 D 64 >gi|254431747|ref|ZP_05045450.1| GTP-binding protein EngA [Cyanobium sp. PCC 7001] gi|197626200|gb|EDY38759.1| GTP-binding protein EngA [Cyanobium sp. PCC 7001] Length = 441 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 36/88 (40%), Positives = 54/88 (61%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSL NA+ ++ AIV+ I GTTRD + ++ EG K+ DTAGIR Sbjct: 165 QLAIIGRPNVGKSSLLNAVCGENRAIVSPIRGTTRDTIDTTIEREGKTWKLLDTAGIRRR 224 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + E GI R+F +E +D+ +L+ Sbjct: 225 RSVNYGPEFFGINRSFKAIERSDVCVLV 252 >gi|242242754|ref|ZP_04797199.1| GTP-binding protein EngA [Staphylococcus epidermidis W23144] gi|242233890|gb|EES36202.1| GTP-binding protein EngA [Staphylococcus epidermidis W23144] Length = 436 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 28/88 (31%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSL NA+ ++ IV+++ GTTRD + + +G + DTAG+R+ Sbjct: 177 RLSIIGRPNVGKSSLVNAILGEERVIVSNVAGTTRDAIDTEYSYDGQDYVLIDTAGMRKK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + EK + R +E ++++L++ Sbjct: 237 GKVYESTEKYSVLRALKAIERSEVVLVV 264 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 45/84 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN + + V+IV D PG TRD + + + I DT GI D Sbjct: 6 VAIVGKPNVGKSTIFNRVVGERVSIVEDTPGVTRDRIYSSGEWLTHEFNIIDTGGIEIGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + + + +E AD+I+ + Sbjct: 66 APFQTQIRAQAEIAIEEADVIIFM 89 >gi|27468081|ref|NP_764718.1| GTP-binding protein EngA [Staphylococcus epidermidis ATCC 12228] gi|57867002|ref|YP_188620.1| GTP-binding protein EngA [Staphylococcus epidermidis RP62A] gi|251810897|ref|ZP_04825370.1| GTP-binding protein EngA [Staphylococcus epidermidis BCM-HMP0060] gi|282876093|ref|ZP_06284960.1| ribosome-associated GTPase EngA [Staphylococcus epidermidis SK135] gi|293366558|ref|ZP_06613235.1| ribosome-associated GTPase EngA [Staphylococcus epidermidis M23864:W2(grey)] gi|37999682|sp|Q8CP62|DER_STAES RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|71151866|sp|Q5HP70|DER_STAEQ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|27315626|gb|AAO04760.1|AE016747_257 GTP binding protein [Staphylococcus epidermidis ATCC 12228] gi|57637660|gb|AAW54448.1| GTP-binding protein, Era/TrmE family [Staphylococcus epidermidis RP62A] gi|251805577|gb|EES58234.1| GTP-binding protein EngA [Staphylococcus epidermidis BCM-HMP0060] gi|281295118|gb|EFA87645.1| ribosome-associated GTPase EngA [Staphylococcus epidermidis SK135] gi|291319327|gb|EFE59696.1| ribosome-associated GTPase EngA [Staphylococcus epidermidis M23864:W2(grey)] gi|329735360|gb|EGG71652.1| ribosome biogenesis GTPase Der [Staphylococcus epidermidis VCU045] gi|329737420|gb|EGG73674.1| ribosome biogenesis GTPase Der [Staphylococcus epidermidis VCU028] Length = 436 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 28/88 (31%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSL NA+ ++ IV+++ GTTRD + + +G + DTAG+R+ Sbjct: 177 RLSIIGRPNVGKSSLVNAILGEERVIVSNVAGTTRDAIDTEYSYDGQDYVLIDTAGMRKK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + EK + R +E ++++L++ Sbjct: 237 GKVYESTEKYSVLRALKAIERSEVVLVV 264 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 45/84 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN + + ++IV D PG TRD + + + I DT GI D Sbjct: 6 VAIVGKPNVGKSTIFNRVVGERISIVEDTPGVTRDRIYSSGEWLTHEFNIIDTGGIEIGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + + + +E AD+I+ + Sbjct: 66 APFQTQIRAQAEIAIEEADVIIFM 89 >gi|329725422|gb|EGG61905.1| ribosome biogenesis GTPase Der [Staphylococcus epidermidis VCU144] Length = 436 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 28/88 (31%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSL NA+ ++ IV+++ GTTRD + + +G + DTAG+R+ Sbjct: 177 RLSIIGRPNVGKSSLVNAILGEERVIVSNVAGTTRDAIDTEYSYDGQDYVLIDTAGMRKK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + EK + R +E ++++L++ Sbjct: 237 GKVYESTEKYSVLRALKAIERSEVVLVV 264 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 45/84 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN + + V+IV D PG TRD + + + I DT GI D Sbjct: 6 VAIVGKPNVGKSTIFNRVVGERVSIVEDTPGVTRDRIYSSGEWLTHEFNIIDTGGIEIGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + + + +E AD+I+ + Sbjct: 66 APFQTQIRAQAEIAIEEADVIIFM 89 >gi|262091771|gb|ACY25359.1| GTP-binding protein Era [uncultured actinobacterium] Length = 653 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 28/64 (43%), Positives = 42/64 (65%), Gaps = 1/64 (1%) Query: 217 RNGY-KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 ++GY K+ ++G N GKSSLFNA+A + ++IV D GTTRD + L G + DTA Sbjct: 389 QDGYRKVALIGRPNVGKSSLFNAIAGESLSIVDDAAGTTRDPVDSLLSFGGSTWRFIDTA 448 Query: 276 GIRE 279 G+++ Sbjct: 449 GLKK 452 Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust. Identities = 41/165 (24%), Positives = 68/165 (41%), Gaps = 31/165 (18%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ILG N GKS+L N + AIV D PG TRD + + + G I DT G Sbjct: 223 VAILGRPNVGKSTLINRFLGRREAIVEDTPGVTRDRVQYECEWGGRRFIIMDTGGWEAKP 282 Query: 282 DIVEKEGIKRTFLEVENADLI---------------LLLKEINSKKEISFPKNIDFIFIG 326 D + + + L ++ AD++ +L++ + K+ + I IG Sbjct: 283 DGISVQVSAGSELAMQEADVLAFVVDAQVGALDEDDILVQHLRKAKKPT-------ILIG 335 Query: 327 TKSDLYSTYTEEY---------DHLISSFTGEGLEELINKIKSIL 362 K D E + +S+ G G +L++ I ++L Sbjct: 336 NKVDGEREEAEAHGLWSLGLGEPRFVSALHGRGSGDLLDHIVAVL 380 >gi|239978699|ref|ZP_04701223.1| GTP-binding protein EngA [Streptomyces albus J1074] gi|291450591|ref|ZP_06589981.1| GTP-binding protein engA [Streptomyces albus J1074] gi|291353540|gb|EFE80442.1| GTP-binding protein engA [Streptomyces albus J1074] Length = 487 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 39/59 (66%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 +I ++G N GKSSL N +A++D +V ++ GTTRD + ++L G K DTAGIR+ Sbjct: 226 RIALIGRPNVGKSSLLNKVAREDRVVVNELAGTTRDPVDELIELGGVTWKFVDTAGIRK 284 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 32/55 (58%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 + ++G N GKS+L N + + A+V D PG TRD +T + + G K+ DT G Sbjct: 51 LAVVGRPNVGKSTLVNRIIGRREAVVEDKPGVTRDRVTYEAEWAGRRFKLVDTGG 105 >gi|304391252|ref|ZP_07373196.1| ribosome-associated GTPase EngA [Ahrensia sp. R2A130] gi|303296608|gb|EFL90964.1| ribosome-associated GTPase EngA [Ahrensia sp. R2A130] Length = 478 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 40/66 (60%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI I+G NAGKS+L N + +D + G TRD +++D + +G +K+ DTAG+R Sbjct: 207 KICIVGRPNAGKSTLINRMLGEDRLLTGPEAGITRDSISVDWEWQGRSIKLFDTAGMRRK 266 Query: 281 DDIVEK 286 + EK Sbjct: 267 ARVQEK 272 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 36/62 (58%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 + + + G N GKS+LFN L K +A+V D PG TRD + + + ++ DTAG+ E Sbjct: 3 FTVAVAGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDRRSGNARIGDIKFEVIDTAGLEE 62 Query: 280 TD 281 D Sbjct: 63 AD 64 >gi|221194359|ref|ZP_03567416.1| ribosome-associated GTPase EngA [Atopobium rimae ATCC 49626] gi|221185263|gb|EEE17653.1| ribosome-associated GTPase EngA [Atopobium rimae ATCC 49626] Length = 440 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSL N LA K +IV+++ GTTRD + + + + + DTAG+R+ Sbjct: 180 RLAIIGRPNVGKSSLANRLAGKKRSIVSNVAGTTRDAIDTMIMWKDQPICLVDTAGMRQK 239 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + VE + R ++ AD+ LL+ Sbjct: 240 SKVHEDVEYYSLLRGLRAMDRADVCLLV 267 Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 2/86 (2%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--E 279 + ++G N GKS+L N LA++ AIV + G TRD D D G + DT GI + Sbjct: 6 VAVVGRPNVGKSTLVNRLAQRREAIVHESRGVTRDRSYHDADWNGREFCLIDTGGIESVK 65 Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305 + D ++ L E AD+I+ + Sbjct: 66 SKDQFAPHIREQALLACEEADVIVFV 91 >gi|167749645|ref|ZP_02421772.1| hypothetical protein EUBSIR_00603 [Eubacterium siraeum DSM 15702] gi|167657398|gb|EDS01528.1| hypothetical protein EUBSIR_00603 [Eubacterium siraeum DSM 15702] Length = 400 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 49/161 (30%), Positives = 81/161 (50%), Gaps = 16/161 (9%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280 I I G NAGKSSL NA+ +++A+V+D GTT D ++ ++L V I+DT G+ + Sbjct: 14 IGIFGRRNAGKSSLINAITGQELAVVSDTAGTTTDPVSKAMELLPLGPVMITDTPGLDDE 73 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS----------FPKNIDFIFIGTKSD 330 D+ +++++ + D+ LL+ ++S K IS +NI +I + K Sbjct: 74 GDLGSLR-VRKSYQVLFKTDIALLV--VDSTKGISDFDSAILERLKKQNIPYIIVMNKCG 130 Query: 331 LYSTYTEEYDHLI--SSFTGEGLEELINKIKSILSNKFKKL 369 L T + D I + G + EL I S L K +K+ Sbjct: 131 LLDTVPPKTDGTIYTDALNGTNIYELKELIGSRLDVKDEKM 171 >gi|172034988|ref|YP_001801489.1| hypothetical protein cce_0071 [Cyanothece sp. ATCC 51142] gi|171696442|gb|ACB49423.1| unknown [Cyanothece sp. ATCC 51142] Length = 537 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 67/227 (29%), Positives = 107/227 (47%), Gaps = 29/227 (12%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL--VKISDT 274 R +K+VI G +AGK+SL NAL + + V GTT+ T L L+G + I+DT Sbjct: 129 RGEFKVVIFGTGSAGKTSLVNALLGEIIGQVQATMGTTKIGETYALKLKGLSREILITDT 188 Query: 275 AGIRETD-DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDL-- 331 GI E + E+E + R ADL+L + + + ++ P I + IG +S L Sbjct: 189 PGILEAGIEGTEREKLARQL--ATEADLLLFVVDNDLRQSEYKPLQI-LVDIGKRSLLVF 245 Query: 332 --YSTYTEEYDHLISSFTGEGLEELINKIKSILSNK----FKKLPFSIPSHKRHLYHLSQ 385 YTEE + I L++L ++KS + + P + PS S Sbjct: 246 NKVDLYTEEEETQI-------LQQLRERVKSFIPEQDVISVAANPQTFPSQTGQTIQPSP 298 Query: 386 TVRYL--EMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLD 430 + L +A++ + G D+IA+N+ L S LG+ + QL+D Sbjct: 299 DILPLIKRLATILRAE-GEDLIADNILLQSQRLGE-----EARQLID 339 >gi|319784770|ref|YP_004144246.1| ribosome-associated GTPase EngA [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170658|gb|ADV14196.1| ribosome-associated GTPase EngA [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 477 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 40/66 (60%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I ++G NAGKS+L NAL ++ + G TRD +++D D G +K+ DTAG+R Sbjct: 207 RIAVVGRPNAGKSTLINALIGEERLLTGPEAGITRDSISVDWDWHGRRLKLFDTAGMRRK 266 Query: 281 DDIVEK 286 I EK Sbjct: 267 ARIHEK 272 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 36/111 (32%), Positives = 54/111 (48%), Gaps = 4/111 (3%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 +K+ I+G N GKS+LFN L + +A+V D PG TRD L + DTAG + Sbjct: 3 FKVAIIGRPNVGKSTLFNRLVGRKLALVDDTPGVTRDRRVHAAKLYDLHFDVIDTAGFED 62 Query: 280 TDDIVEKEGIK-RTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKS 329 ++ +T + + ADLI I++K + P + F I KS Sbjct: 63 AGASTLPGRMRAQTEIAIREADLIFF--TIDAKSGL-LPDDRTFAEIVRKS 110 >gi|165932728|ref|YP_001649517.1| GTPase Era [Rickettsia rickettsii str. Iowa] gi|165907815|gb|ABY72111.1| GTP-binding protein [Rickettsia rickettsii str. Iowa] Length = 339 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 50/159 (31%), Positives = 82/159 (51%), Gaps = 20/159 (12%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N+GKS+L N + + ++IVT TTR ++T + L+ V + DT GI E Sbjct: 55 VCIIGQPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPK 114 Query: 282 DIVEKEGIKRTFLEVENADLILL-LKEINSKKEISF-------PKNIDFIFIGTKSDLYS 333 +EK ++ + + +ADL+LL + + S +I+ NI IF+ K D+ S Sbjct: 115 GSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIIPIFLLNKIDIES 174 Query: 334 TY--------TEEY-DHL---ISSFTGEGLEELINKIKS 360 Y TE Y D L IS+ +G+ ++ L+ I S Sbjct: 175 KYLNDIKAFLTENYPDSLLLPISALSGKNIDGLLEYITS 213 >gi|78776593|ref|YP_392908.1| GTP-binding protein EngA [Sulfurimonas denitrificans DSM 1251] gi|123550784|sp|Q30TK8|DER_SULDN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|78497133|gb|ABB43673.1| GTPase family protein [Sulfurimonas denitrificans DSM 1251] Length = 494 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 33/90 (36%), Positives = 54/90 (60%), Gaps = 2/90 (2%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 N KI I+G +N GKSSL NAL ++ ++V+ + GTT D + ++ + + DTAG+ Sbjct: 233 NHIKISIIGRTNVGKSSLLNALLGEERSVVSSVAGTTIDPIDESMEYKDKQLTFVDTAGL 292 Query: 278 RETDDIV--EKEGIKRTFLEVENADLILLL 305 R IV EK + RT +EN+++ L++ Sbjct: 293 RRRGKIVGIEKFALMRTKEMLENSNMALVV 322 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 38/89 (42%), Positives = 53/89 (59%), Gaps = 9/89 (10%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL---TIDLDLEGYLVKISDTAGI 277 KI I+G N GKSSLFN L KK AI +D+ GTTRDV + ++ E L+ DT G+ Sbjct: 3 KIAIIGRPNVGKSSLFNRLMKKRDAITSDVAGTTRDVKRRHVVIINKEALLL---DTGGL 59 Query: 278 RETDDIVEKEGIKRTFLE-VENADLILLL 305 + ++ +K IK LE + AD+IL + Sbjct: 60 DQGCELFDK--IKEKSLEAAKKADIILYM 86 >gi|302806046|ref|XP_002984773.1| hypothetical protein SELMODRAFT_121150 [Selaginella moellendorffii] gi|300147359|gb|EFJ14023.1| hypothetical protein SELMODRAFT_121150 [Selaginella moellendorffii] Length = 490 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 7/93 (7%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRET 280 + I+G N GKSS+ NA+ K+ IV+ + GTTRD + ++ EG + ++ DTAGIR+ Sbjct: 210 VAIIGRPNVGKSSILNAIVGKERTIVSPVSGTTRDAIDTEVAGPEGKVFRLIDTAGIRKR 269 Query: 281 DDIV------EKEGIKRTFLEVENADLILLLKE 307 I E ++ + AD++ L+ E Sbjct: 270 AAIASGGSKTESLCVQSALRAIRRADVVALVIE 302 Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust. Identities = 20/38 (52%), Positives = 27/38 (71%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 K+ I+G N GKS+LFN + +++AIV D PG TRD L Sbjct: 9 KVAIVGRPNVGKSALFNRIVGRNMAIVHDEPGVTRDRL 46 >gi|223040568|ref|ZP_03610840.1| HydF [Campylobacter rectus RM3267] gi|222878203|gb|EEF13312.1| HydF [Campylobacter rectus RM3267] Length = 394 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 44/131 (33%), Positives = 69/131 (52%), Gaps = 10/131 (7%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDD 282 I G N GKSS+ N L+ + +IV+D+ GTT D + +++ G + DTAG+ + + Sbjct: 13 IFGRRNVGKSSIMNMLSNQSASIVSDVAGTTTDTVQKSIEIHGLGAATLFDTAGVDDAGE 72 Query: 283 IVEKEGIKRTFLEVENADLILLLKEIN--SKKEISF-----PKNIDFIFIGTKSDLYSTY 335 + EK I +T +EN D+ +L+ E N SK E N F+ + K DL T Sbjct: 73 LGEKR-ILKTNETIENIDIAVLVVENNEFSKFESELIDKFKSLNKPFLLLVNKCDLKETK 131 Query: 336 TEEYDHLISSF 346 E+ +LI+ F Sbjct: 132 G-EFLNLINPF 141 >gi|221506372|gb|EEE32007.1| GTP-binding protein, putative [Toxoplasma gondii VEG] Length = 428 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 60/240 (25%), Positives = 100/240 (41%), Gaps = 42/240 (17%) Query: 169 RSFIEA--DLDFSEEEDVQNFSSKEVLNDILFLKNDISSH--ISQGKLGEIIRNGY-KIV 223 R F+ A +F ED+ S ++ + I++H + L ++ N + ++ Sbjct: 171 RPFVHAFQPREFLNREDLPWLSPEQRKYSRILFGKPIAAHPVLVAQTLHKLPHNPWPQVA 230 Query: 224 ILGHSNAGKSSLFNALAK-KDVAIVTDIPGTTRDVLTIDL-------DLEGY-LVKISDT 274 +GHSN GKSSL NAL +DVA PG TR + T DL DL GY ++ Sbjct: 231 AVGHSNVGKSSLLNALMHGRDVARSCSKPGRTRHLFTFDLGNHLSLVDLPGYGFARVKPQ 290 Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP----KNIDFIFIGTKSD 330 ++E I+ +E R+ L+ K + + E + KN+ F + TK+D Sbjct: 291 --LKEEWAILIEEYFTRSKQLRRVLSLVDATKGVEALDERLWQLLAEKNLPFQVVLTKAD 348 Query: 331 LYS----------------------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKK 368 L + T + H +SS G+ EL + ++ S+ K+ Sbjct: 349 LLTARELHAAMFDVLSRLQAVEKKETLLHPFVHAVSSRHNHGIPELRASLAAVASDWRKR 408 >gi|13476158|ref|NP_107728.1| GTP-binding protein EngA [Mesorhizobium loti MAFF303099] gi|26006731|sp|Q986D9|DER_RHILO RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|14026918|dbj|BAB53514.1| GTP-binding protei [Mesorhizobium loti MAFF303099] Length = 479 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 40/66 (60%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I ++G NAGKS+L NAL ++ + G TRD +++D D G +K+ DTAG+R Sbjct: 209 RIAVVGRPNAGKSTLINALIGEERLLTGPEAGITRDSISVDWDWHGRRLKLFDTAGMRRK 268 Query: 281 DDIVEK 286 I EK Sbjct: 269 ARIHEK 274 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 36/111 (32%), Positives = 54/111 (48%), Gaps = 4/111 (3%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 +K+ I+G N GKS+LFN L + +A+V D PG TRD L + DTAG + Sbjct: 3 FKVAIIGRPNVGKSTLFNRLVGRKLALVDDTPGVTRDRRVHAAKLYDLHFDVIDTAGFED 62 Query: 280 TDDIVEKEGIK-RTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKS 329 ++ +T + + ADLI I++K + P + F I KS Sbjct: 63 AGASTLPGRMRAQTEIAIHEADLIFF--TIDAKSGL-LPDDRTFAEIVRKS 110 >gi|89099128|ref|ZP_01172007.1| GTP-binding protein EngA [Bacillus sp. NRRL B-14911] gi|89086258|gb|EAR65380.1| GTP-binding protein EngA [Bacillus sp. NRRL B-14911] Length = 436 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K ++G N GKSSL NA+ ++ IV++I GTTRD + L G I DTAG+R+ Sbjct: 177 KFSLIGRPNVGKSSLVNAILGEERVIVSNIAGTTRDAVDSLLTYNGDQYVIIDTAGMRKK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + EK + R +E +D++L++ Sbjct: 237 GKVYESTEKYSVLRALRAIERSDVVLVV 264 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS++FN + + ++IV DIPG TRD + + I DT GI D Sbjct: 6 IAIVGRPNVGKSTIFNRIVGERISIVEDIPGVTRDRIYSSAEWLNLDFNIIDTGGIDIGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + ++ ++ + +E AD+IL L Sbjct: 66 EPFLEQIRQQAEIAIEEADVILFL 89 >gi|237844091|ref|XP_002371343.1| GTP-binding protein, putative [Toxoplasma gondii ME49] gi|211969007|gb|EEB04203.1| GTP-binding protein, putative [Toxoplasma gondii ME49] Length = 428 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 60/240 (25%), Positives = 100/240 (41%), Gaps = 42/240 (17%) Query: 169 RSFIEA--DLDFSEEEDVQNFSSKEVLNDILFLKNDISSH--ISQGKLGEIIRNGY-KIV 223 R F+ A +F ED+ S ++ + I++H + L ++ N + ++ Sbjct: 171 RPFVHAFQPREFLNREDLPWLSPEQRKYSRILFGKPIAAHPVLVAQTLHKLPHNPWPQVA 230 Query: 224 ILGHSNAGKSSLFNALAK-KDVAIVTDIPGTTRDVLTIDL-------DLEGY-LVKISDT 274 +GHSN GKSSL NAL +DVA PG TR + T DL DL GY ++ Sbjct: 231 AVGHSNVGKSSLLNALMHGRDVARSCSKPGRTRHLFTFDLGNHLSLVDLPGYGFARVKPQ 290 Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP----KNIDFIFIGTKSD 330 ++E I+ +E R+ L+ K + + E + KN+ F + TK+D Sbjct: 291 --LKEEWAILIEEYFTRSKQLRRVLSLVDATKGVEALDERLWQLLAEKNLPFQVVLTKAD 348 Query: 331 LYS----------------------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKK 368 L + T + H +SS G+ EL + ++ S+ K+ Sbjct: 349 LLTARELHAAMFDVLSRLQAVEKKETLLHPFVHAVSSRHNHGIPELRASLAAVASDWRKR 408 >gi|114565878|ref|YP_753032.1| small GTP-binding protein domain-containing protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114336813|gb|ABI67661.1| small GTP-binding protein domain [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 402 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 51/160 (31%), Positives = 78/160 (48%), Gaps = 23/160 (14%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAG 276 N I I G NAGKSSL NAL ++++A+V+++PGTT D + ++ L I DTAG Sbjct: 8 NRLHIAIFGRRNAGKSSLINALTRQEIALVSEVPGTTTDPVFKAMEILPIGPCMIIDTAG 67 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL-----------KEINSKKEISFPKNIDFIFI 325 I + + E IK+T + DL LL+ KE+ K+ + I I + Sbjct: 68 IDDEGQLGELR-IKKTREVLNQTDLALLVIDPALGISEFEKEL---KQAIRSRKIALIGV 123 Query: 326 GTKSDLYSTYTEEYDH-------LISSFTGEGLEELINKI 358 K+D + + +SS +GEG+E L +I Sbjct: 124 LNKTDQGQVDKKSLEKQLGLSLVAVSSRSGEGIEFLKERI 163 >gi|312128379|ref|YP_003993253.1| small gtp-binding protein [Caldicellulosiruptor hydrothermalis 108] gi|311778398|gb|ADQ07884.1| small GTP-binding protein [Caldicellulosiruptor hydrothermalis 108] Length = 403 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 86/164 (52%), Gaps = 25/164 (15%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTAGIRE 279 I I G NAGKSSL NA+ + +AIV+D+PGTT D + +++ G +V I DTAGI + Sbjct: 12 IAIFGKRNAGKSSLINAITNQPIAIVSDMPGTTTDPVYKSMEILPLGPVVLI-DTAGI-D 69 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF-------IGT--KSD 330 + I+ K +++T + D+ +L+ ++ ++++ K + +F IG K D Sbjct: 70 DEGILGKLRVEKTLEVLNKTDIAILV--VSDIDDLTYEKQLAALFDEKKVPRIGVLNKID 127 Query: 331 LYSTYTEEYDHL----------ISSFTGEGLEELINKIKSILSN 364 Y E+ L +S T +G++EL N + ++ + Sbjct: 128 KDPNYKEKLSFLQSTLGMPFLAVSCVTLKGIDELKNALSKLVPD 171 >gi|239940226|ref|ZP_04692163.1| GTP-binding protein EngA [Streptomyces roseosporus NRRL 15998] gi|239986716|ref|ZP_04707380.1| GTP-binding protein EngA [Streptomyces roseosporus NRRL 11379] gi|291443657|ref|ZP_06583047.1| GTP-binding protein engA [Streptomyces roseosporus NRRL 15998] gi|291346604|gb|EFE73508.1| GTP-binding protein engA [Streptomyces roseosporus NRRL 15998] Length = 489 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 40/68 (58%) Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270 K G + +I ++G N GKSSL N +A +D +V ++ GTTRD + ++L G K Sbjct: 218 KFGTALGGPRRIALIGRPNVGKSSLLNKVAGEDRVVVNELAGTTRDPVDELINLGGITWK 277 Query: 271 ISDTAGIR 278 DTAGIR Sbjct: 278 FIDTAGIR 285 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 1/69 (1%) Query: 209 QGKLGEIIRNGYKIV-ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267 +G LGE ++ ++G N GKS+L N + + A+V D PG TRD ++ + + G Sbjct: 40 EGALGEAGHGPLPVLAVVGRPNVGKSTLVNRIIGRREAVVQDKPGVTRDRVSYEAEWAGR 99 Query: 268 LVKISDTAG 276 K+ DT G Sbjct: 100 RFKVVDTGG 108 >gi|322380446|ref|ZP_08054647.1| GTP-binding protein EngA [Helicobacter suis HS5] gi|321147128|gb|EFX41827.1| GTP-binding protein EngA [Helicobacter suis HS5] Length = 348 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 52/87 (59%), Gaps = 2/87 (2%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSL NAL +++ A+V++IPGTT D + + + DTAG+R+ Sbjct: 88 QVGIIGRVNVGKSSLLNALIEQERALVSEIPGTTIDPVDQSISHHNQEICFVDTAGLRQR 147 Query: 281 DDI--VEKEGIKRTFLEVENADLILLL 305 + +EK + RT +E + + LL+ Sbjct: 148 SKVEGLEKFALDRTRKVLEKSHIALLV 174 >gi|302808277|ref|XP_002985833.1| hypothetical protein SELMODRAFT_123195 [Selaginella moellendorffii] gi|300146340|gb|EFJ13010.1| hypothetical protein SELMODRAFT_123195 [Selaginella moellendorffii] Length = 492 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 7/93 (7%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAGIRET 280 + I+G N GKSS+ NA+ K+ IV+ + GTTRD + ++ EG + ++ DTAGIR+ Sbjct: 212 VAIIGRPNVGKSSILNAIVGKERTIVSPVSGTTRDAIDTEVTGPEGKVFRLIDTAGIRKR 271 Query: 281 DDIV------EKEGIKRTFLEVENADLILLLKE 307 I E ++ + AD++ L+ E Sbjct: 272 AAIASGGSKTESLCVQSALRAIRRADVVALVIE 304 Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust. Identities = 20/38 (52%), Positives = 27/38 (71%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 K+ I+G N GKS+LFN + +++AIV D PG TRD L Sbjct: 11 KVAIVGRPNVGKSALFNRIVGRNMAIVHDEPGVTRDRL 48 >gi|163736771|ref|ZP_02144190.1| Small GTP-binding protein domain [Phaeobacter gallaeciensis BS107] gi|161390641|gb|EDQ14991.1| Small GTP-binding protein domain [Phaeobacter gallaeciensis BS107] Length = 508 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 1/87 (1%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 + + I+G N GKS+LFN L K +A+V D PG TRD+ + L + DTAG+ + Sbjct: 25 FTLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGEARLGDLRFTVVDTAGLED 84 Query: 280 -TDDIVEKEGIKRTFLEVENADLILLL 305 TD+ +E + T V+ AD+ L + Sbjct: 85 ATDNSLEGRMRRLTERAVDMADVCLFM 111 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 40/66 (60%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ ++G NAGKS+L N + +D + G TRD +++ +D + ++I DTAG+R+ Sbjct: 224 QVAVVGRPNAGKSTLINKILGEDRLLTGPEAGITRDAISLQIDWQDVPMRIFDTAGMRKK 283 Query: 281 DDIVEK 286 + EK Sbjct: 284 AKVQEK 289 >gi|163743210|ref|ZP_02150592.1| GTP-binding protein EngA [Phaeobacter gallaeciensis 2.10] gi|161383627|gb|EDQ08014.1| GTP-binding protein EngA [Phaeobacter gallaeciensis 2.10] Length = 508 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 1/87 (1%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 + + I+G N GKS+LFN L K +A+V D PG TRD+ + L + DTAG+ + Sbjct: 25 FTLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGEARLGDLRFTVVDTAGLED 84 Query: 280 -TDDIVEKEGIKRTFLEVENADLILLL 305 TD+ +E + T V+ AD+ L + Sbjct: 85 ATDNSLEGRMRRLTERAVDMADVCLFM 111 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 40/66 (60%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ ++G NAGKS+L N + +D + G TRD +++ +D + ++I DTAG+R+ Sbjct: 224 QVAVVGRPNAGKSTLINKILGEDRLLTGPEAGITRDAISLQIDWQDVPMRIFDTAGMRKK 283 Query: 281 DDIVEK 286 + EK Sbjct: 284 AKVQEK 289 >gi|159043715|ref|YP_001532509.1| GTP-binding protein EngA [Dinoroseobacter shibae DFL 12] gi|189037146|sp|A8LHW1|DER_DINSH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|157911475|gb|ABV92908.1| small GTP-binding protein [Dinoroseobacter shibae DFL 12] Length = 490 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 41/66 (62%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ ++G NAGKS+L N L +D + G TRD +++ +D +G V+I DTAG+R+ Sbjct: 204 QVAVVGRPNAGKSTLINQLLGEDRLLTGPEAGITRDAISLAMDWDGLPVRIFDTAGMRKK 263 Query: 281 DDIVEK 286 + EK Sbjct: 264 AKVQEK 269 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/87 (39%), Positives = 46/87 (52%), Gaps = 1/87 (1%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 + + I+G N GKS+LFN L K +A+V D PG TRD+ L + DTAG+ E Sbjct: 3 FTLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGAARLGDLRFTVIDTAGLEE 62 Query: 280 -TDDIVEKEGIKRTFLEVENADLILLL 305 TDD ++ + T V AD L L Sbjct: 63 ATDDSLQGRMRRLTERAVSMADACLFL 89 >gi|54401991|gb|AAV34670.1| ThdF [Escherichia coli] Length = 158 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 37/100 (37%), Positives = 54/100 (54%), Gaps = 4/100 (4%) Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEM--ASLNEKDC 400 +S+ TGEG++ L N +K + + + +RHL L Q +L+ A L Sbjct: 61 LSARTGEGVDVLRNHLKQSMGFD-TNMEGGFLARRRHLQALEQAAEHLQQGKAQLLGAWA 119 Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 G +++AE LRLA +L +ITG + LL IFS FCIGK Sbjct: 120 G-ELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 158 >gi|20093894|ref|NP_613741.1| HflX family GTPase [Methanopyrus kandleri AV19] gi|19886832|gb|AAM01671.1| GTPase of the HflX family [Methanopyrus kandleri AV19] Length = 423 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 62/234 (26%), Positives = 109/234 (46%), Gaps = 33/234 (14%) Query: 217 RNGYKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 R G+++V L G++ AGKS+L AL + V + + + T D T +DL+G+ V ++DT Sbjct: 186 RLGFELVTLAGYTCAGKSTLMRALTDETVYVDSKMFSTL-DTKTRAVDLDGHRVLLTDTV 244 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILL-------LKEINSK--------KEISFPKNI 320 G + E K T E ADL+LL L EI K +EI I Sbjct: 245 GFVDNLPHWLVESFKSTLEETAQADLVLLVVDVSDELPEIKRKLRVCHRTLEEIGAEGPI 304 Query: 321 DFIFIGTKSDLYSTYTEE-----------YDHLISSFTGEGLEELINKIKSILSNKFKKL 369 + K+DL E + ++S+ TGEGL++L +++++LS +K + Sbjct: 305 --VTALNKADLIGWEEAERRLRELEGYVSHPVVVSAKTGEGLDDLKAEMRTVLSRYWKNV 362 Query: 370 PFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCV 423 +P + +S + E+ ++ ++ D + L ++ +LG + G V Sbjct: 363 RIELPMRNETMRVVS---KLHELGNVLDERWSNDGVEVFLEVSEKALGTVRGTV 413 >gi|13357944|ref|NP_078218.1| GTP-binding protein EngA [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170762344|ref|YP_001752466.1| GTP-binding protein EngA [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171920231|ref|ZP_02931603.1| GTP-binding protein EngA [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|183508601|ref|ZP_02958112.1| GTP-binding protein EngA [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186701797|ref|ZP_02971472.1| GTP-binding protein EngA [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|26006745|sp|Q9PQA7|DER_UREPA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|189037169|sp|B1AJ22|DER_UREP2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|11280266|pir||B82899 conserved hypothetical ATP/GTP-binding protein UU383 [imported] - Ureaplasma urealyticum gi|6899367|gb|AAF30793.1|AE002135_9 conserved hypothetical ATP/GTP-binding protein [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827921|gb|ACA33183.1| GTP-binding protein EngA [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171902626|gb|EDT48915.1| GTP-binding protein EngA [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|182676057|gb|EDT87962.1| GTP-binding protein EngA [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186701078|gb|EDU19360.1| GTP-binding protein EngA [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 442 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 35/89 (39%), Positives = 46/89 (51%), Gaps = 3/89 (3%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 +K I+G N GKSSL N + + IV G+TRD + D + I DTAGIR Sbjct: 175 FKFCIIGRPNVGKSSLTNTILGEQRVIVNAEAGSTRDSIDNDFNYYNKKYTIIDTAGIRR 234 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLL 305 I VEK + RT +E + LILL+ Sbjct: 235 KGKIVESVEKYAVLRTKKAIERSQLILLV 263 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 6/87 (6%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK---ISDTAGIR 278 I I+G N GKSSLFN + + +IV D PG TRD + D+ +L + + DT GI Sbjct: 4 IAIVGKPNVGKSSLFNRILMRRKSIVDDQPGVTRDRI---YDIGNWLTRSFMLIDTGGII 60 Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL 305 + D + ++ + A+ I+ L Sbjct: 61 SSKDTYQDNINEQVLFAINEANTIIFL 87 >gi|223557988|gb|ACM90994.1| GTPase [uncultured bacterium URE4] Length = 424 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 3/87 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKSSL NAL ++ IVT + GTTRD ++ + G+ + DTAG+R+ Sbjct: 167 IAIVGRPNVGKSSLTNALLGEERNIVTPVAGTTRDSISTYYNKFGHEFMLVDTAGMRKRA 226 Query: 282 DIVEK---EGIKRTFLEVENADLILLL 305 + E + R +E++D+ +L+ Sbjct: 227 KVTEDLEFYSVLRAMRTIEHSDVCILM 253 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 1/81 (1%) Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIK 290 GKS+LFN L AIV + G TRD + G + DT G D V ++ I+ Sbjct: 2 GKSTLFNRLVGMRQAIVDETAGVTRDRHYGKCEWCGTEFSVVDTGGYTSNSDDVFEDAIR 61 Query: 291 R-TFLEVENADLILLLKEINS 310 R + VE AD++L + E + Sbjct: 62 RQVVIAVEEADVVLFMCEAQT 82 >gi|295100402|emb|CBK97947.1| ribosome-associated GTPase EngA [Faecalibacterium prausnitzii L2-6] Length = 447 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 72/160 (45%), Gaps = 27/160 (16%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + +AIV D PG TRD + + + G+ + DT GI Sbjct: 6 VAVVGRPNVGKSTLFNKLCGQRLAIVEDTPGITRDRIFANCEWSGHEFLLVDTGGIEPK- 64 Query: 282 DIVEKEGI-----KRTFLEVENADLILLLKEI----------------NSKKEISFPKNI 320 EGI ++ + ++ AD I+++ ++ S K I N Sbjct: 65 ---ATEGILAHMREQAQIAIDTADCIIMVVDVRNGLTAADEDVAHMLRRSHKPIILAVNK 121 Query: 321 DFIFIGTKSDLYSTYTEEYDHL--ISSFTGEGLEELINKI 358 T +LY Y +D + ISS G G +L++ + Sbjct: 122 CDNVGETPMELYEFYNLGFDEVMPISSVHGHGTGDLLDAV 161 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 3/87 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKSSL N + ++ IV + GTTRD + +D +DTAG+R+ Sbjct: 179 VAIIGRPNVGKSSLTNRILGENRMIVANEAGTTRDAIDTPVDNAYGKFIFTDTAGLRKRS 238 Query: 282 DI---VEKEGIKRTFLEVENADLILLL 305 +I +E+ + R VE + + L+L Sbjct: 239 NITDGLERYMVVRALAAVERSRVALIL 265 >gi|294012485|ref|YP_003545945.1| GTP-binding protein EngA [Sphingobium japonicum UT26S] gi|292675815|dbj|BAI97333.1| GTP-binding protein EngA [Sphingobium japonicum UT26S] Length = 456 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 34/85 (40%), Positives = 46/85 (54%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN L K +A+V D PG TRD +L G I DTAG + D Sbjct: 5 VAIVGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDRREGQANLLGVDFTIIDTAGYEDED 64 Query: 282 DIVEKEGIK-RTFLEVENADLILLL 305 ++ +T VENAD+ L + Sbjct: 65 PQTLPGRMRMQTQAAVENADVALFV 89 Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust. Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 8/93 (8%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL---DLEG--YLVKISDTA 275 K+ I+G NAGKS+L N L ++ + G TRD + +D D +G V++ DTA Sbjct: 186 KLAIVGRPNAGKSTLINRLLGENRLLTGPEAGITRDSIAVDWQWTDPDGNERPVRLIDTA 245 Query: 276 GIR---ETDDIVEKEGIKRTFLEVENADLILLL 305 G+R + D +EK + V A++++LL Sbjct: 246 GMRKRAKVQDKLEKLAVSDGLNAVNFAEVVVLL 278 >gi|182439534|ref|YP_001827253.1| GTP-binding protein EngA [Streptomyces griseus subsp. griseus NBRC 13350] gi|178468050|dbj|BAG22570.1| putative GTP-binding protein [Streptomyces griseus subsp. griseus NBRC 13350] Length = 489 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 40/68 (58%) Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270 K G + +I ++G N GKSSL N +A +D +V ++ GTTRD + ++L G K Sbjct: 218 KFGTALGGPRRIALIGRPNVGKSSLLNKVAGEDRVVVNELAGTTRDPVDELINLGGITWK 277 Query: 271 ISDTAGIR 278 DTAGIR Sbjct: 278 FIDTAGIR 285 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 32/55 (58%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 + ++G N GKS+L N + + A+V D PG TRD ++ + + G K+ DT G Sbjct: 54 LAVVGRPNVGKSTLVNRIIGRREAVVQDKPGVTRDRVSYEAEWAGRRFKVVDTGG 108 >gi|306822736|ref|ZP_07456114.1| ribosome-associated GTPase EngA [Bifidobacterium dentium ATCC 27679] gi|309800900|ref|ZP_07695032.1| ribosome biogenesis GTPase Der [Bifidobacterium dentium JCVIHMP022] gi|304554281|gb|EFM42190.1| ribosome-associated GTPase EngA [Bifidobacterium dentium ATCC 27679] gi|308222436|gb|EFO78716.1| ribosome biogenesis GTPase Der [Bifidobacterium dentium JCVIHMP022] Length = 709 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 46/176 (26%), Positives = 77/176 (43%), Gaps = 17/176 (9%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+L N + + A+V D PG TRD ++ D + G K+ DT G Sbjct: 275 LAVVGRPNVGKSTLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADV 334 Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE-----ISFPKNIDFIFIGTKSDLY 332 + +E + + V+ AD ++L+ + + S E + + + D Sbjct: 335 EGIESAIASQAQMAVQLADAVVLVVDGQVGLTSTDERIVKMLRASGKPVTLAVNKVDDRE 394 Query: 333 STY-TEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380 S Y T E+ + IS+ G G+ EL++ L K F PSH R + Sbjct: 395 SEYLTAEFWKMGLGEPYGISAMHGRGIGELLDVALESLKKAKKTSGFLTPSHLRRV 450 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 41/177 (23%), Positives = 82/177 (46%), Gaps = 27/177 (15%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD----VLTID------LDLEGYLVK 270 ++ ++G N GKSSL N LA ++ ++V D+ GTTRD V+T+D +D G + Sbjct: 449 RVALVGRPNVGKSSLLNQLAHEERSVVNDLAGTTRDPVDEVVTVDGEDWLFIDTAGIKRR 508 Query: 271 ISDTAGIRETDDIVEKEGIKRTFLE---------VENADLILLLKEINSKKEISFPKN-I 320 + +G + + I+R+ L + + DL ++ + +++ + I N Sbjct: 509 LHKLSGAEYFSSLRTQAAIERSELALVLFDASQPISDQDLKVMSQAVDAGRAIVLVFNKW 568 Query: 321 DFIFIGTKSDLYSTYTEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLP 370 D + + + + E+D + +S+ TG L N ++ L + K++P Sbjct: 569 DLMDEFDRQRMERLWKTEFDRVTWAQRVNLSAKTGWHTNRLANAMRGALQSWDKRIP 625 >gi|90961863|ref|YP_535779.1| GTP-binding protein EngA [Lactobacillus salivarius UCC118] gi|227890889|ref|ZP_04008694.1| GTP-binding protein EngA [Lactobacillus salivarius ATCC 11741] gi|122448999|sp|Q1WTQ4|DER_LACS1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|90821057|gb|ABD99696.1| GTP-binding protein [Lactobacillus salivarius UCC118] gi|227867298|gb|EEJ74719.1| GTP-binding protein EngA [Lactobacillus salivarius ATCC 11741] gi|300214593|gb|ADJ79009.1| GTP-binding protein engA [Lactobacillus salivarius CECT 5713] Length = 436 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN LA + ++IV D PG TRD + + G+ + DT GI D Sbjct: 6 VAIVGRPNVGKSTIFNRLAGERISIVEDTPGVTRDRIYARTEWLGHPFNLIDTGGIDIGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + ++ + +E AD+I+ + Sbjct: 66 EPFLTQITEQAEIAIEEADVIIFV 89 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 4/89 (4%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRE 279 K +G N GKSSL NA+ ++ IV++I GTTRD + + E G + DTAGIR+ Sbjct: 176 KFSFIGRPNVGKSSLVNAILGENRVIVSNIEGTTRDAIDTRFETEDGTKYTMIDTAGIRK 235 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLL 305 + EK + R ++ +D++ ++ Sbjct: 236 KGKVYENTEKYSVLRAMRAIDRSDVVCVV 264 >gi|300176539|emb|CBK24204.2| GTP binding protein [Blastocystis hominis] Length = 607 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 39/64 (60%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ ILG N+GKS+L N L K D I IPG TRD ++ +++ +++ DT GI + Sbjct: 314 QLTILGIPNSGKSTLLNTLLKTDRFITGSIPGLTRDTVSTEIEFHNRRIRVVDTPGIPKA 373 Query: 281 DDIV 284 D ++ Sbjct: 374 DGVL 377 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 3/91 (3%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG- 276 N + + ++G +N GKS+LFN L + A+V+ GTTRD + G + DT G Sbjct: 87 NHFSVALVGRTNVGKSTLFNRLVGRRDALVSKEAGTTRDRREGKGHISGLEFTLIDTGGY 146 Query: 277 IRETDDI--VEKEGIKRTFLEVENADLILLL 305 + E +I +E++ K+T VE AD++ L Sbjct: 147 VPENKNISLIEQQINKQTEYAVEKADVLFFL 177 >gi|160880522|ref|YP_001559490.1| small GTP-binding protein [Clostridium phytofermentans ISDg] gi|189037143|sp|A9KLK7|DER_CLOPH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|160429188|gb|ABX42751.1| small GTP-binding protein [Clostridium phytofermentans ISDg] Length = 441 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 50/88 (56%), Gaps = 1/88 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + ++G N GKS+LFNALA ++IV D PG TRD + D+ + DT GI E+ Sbjct: 6 VAVVGRPNVGKSTLFNALAGDRISIVKDTPGVTRDRIYADITWLDKQFTLVDTGGIEPES 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308 D++ ++ + + AD+I+ + ++ Sbjct: 66 KDMMLTYMREQAEIAIATADVIMFVVDV 93 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 32/83 (38%), Positives = 44/83 (53%), Gaps = 3/83 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I I+G N GKSS+ N L ++ IV+D+ GTTRD + + DTAG+R Sbjct: 179 RIAIVGKPNVGKSSIINKLLGENRVIVSDVAGTTRDAIDTAVTWNKKDYVFIDTAGLRRK 238 Query: 281 DDI---VEKEGIKRTFLEVENAD 300 I +E+ I RT VE AD Sbjct: 239 SKIKEELERFSIIRTVSAVERAD 261 >gi|326780198|ref|ZP_08239463.1| ribosome-associated GTPase EngA [Streptomyces cf. griseus XylebKG-1] gi|326660531|gb|EGE45377.1| ribosome-associated GTPase EngA [Streptomyces cf. griseus XylebKG-1] Length = 489 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 40/68 (58%) Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270 K G + +I ++G N GKSSL N +A +D +V ++ GTTRD + ++L G K Sbjct: 218 KFGTALGGPRRIALIGRPNVGKSSLLNKVAGEDRVVVNELAGTTRDPVDELINLGGITWK 277 Query: 271 ISDTAGIR 278 DTAGIR Sbjct: 278 FIDTAGIR 285 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 32/55 (58%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 + ++G N GKS+L N + + A+V D PG TRD ++ + + G K+ DT G Sbjct: 54 LAVVGRPNVGKSTLVNRIIGRREAVVQDKPGVTRDRVSYEAEWAGRRFKVVDTGG 108 >gi|253699692|ref|YP_003020881.1| GTP-binding protein Era [Geobacter sp. M21] gi|259645946|sp|C6E2H7|ERA_GEOSM RecName: Full=GTPase Era gi|251774542|gb|ACT17123.1| GTP-binding protein Era [Geobacter sp. M21] Length = 297 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 50/193 (25%), Positives = 84/193 (43%), Gaps = 22/193 (11%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R+G+ + I+G N GKS+L N + + + I +D P TTR+ + ++ G + DT G Sbjct: 7 RSGF-VSIVGRPNVGKSTLLNRILGEKLMITSDKPQTTRNRIKGIHNVPGGQIVFIDTPG 65 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL--------KEINSKKEISFPKNIDFIFIGTK 328 I + K + V+ DLIL L KE KE+ + I + K Sbjct: 66 IHRAKSRLNKFMVDEALSSVQGVDLILFLVDGAVDPEKEAGMIKEVLSGVDAPVILVMNK 125 Query: 329 SDL---------YSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375 DL S Y + Y +S+ TG+G+E+L+ + +L P I + Sbjct: 126 IDLVPKGELLERMSCYGDTYPFKEIIPVSAGTGDGVEQLVQLVHGLLPEGPCYFPDDILT 185 Query: 376 HKRHLYHLSQTVR 388 + +++ VR Sbjct: 186 DVPERFIVAEIVR 198 >gi|331004162|ref|ZP_08327642.1| hypothetical protein HMPREF0491_02504 [Lachnospiraceae oral taxon 107 str. F0167] gi|330411572|gb|EGG90982.1| hypothetical protein HMPREF0491_02504 [Lachnospiraceae oral taxon 107 str. F0167] Length = 403 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 50/158 (31%), Positives = 84/158 (53%), Gaps = 15/158 (9%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280 I + G N GKSSL NA+ +++AIV++I GTT D + ++L + V + DT GI + Sbjct: 20 ICLFGRCNVGKSSLINAITSQNIAIVSEIRGTTTDPVKKSMELLPFGPVVLVDTPGIDDE 79 Query: 281 DDIVEKEGIKRTFLEVENADLILLL----KEINSKKEISFPKNI---DFIFIGTKSDLYS 333 + E ++++ ++ ADLIL + EI SK+E+ F + I I +G K D Sbjct: 80 SSLGELR-VQKSMEYIDQADLILFVVDGGSEI-SKEELEFIEKIKEKKHIIVGNKCDSIE 137 Query: 334 TYTEEYDHLISSFTGEGLEELINKIKSILS---NKFKK 368 +E I + + I+K+K++++ NK KK Sbjct: 138 DNKKECKADIYVSATQNIN--IDKLKALMAEILNKGKK 173 >gi|317418209|emb|CBM95518.1| GTP-binding protein-like protein [Helicobacter cetorum] Length = 172 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 34/84 (40%), Positives = 49/84 (58%), Gaps = 1/84 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LAK+ +AI +D GTTRD+ + L V++ DT G+ + + Sbjct: 10 IAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINRRKIFLNESEVELLDTGGM-DKN 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ KE + +DLIL + Sbjct: 69 VVLSKEIKTFNLKAAQMSDLILYV 92 >gi|313886420|ref|ZP_07820140.1| hydrogenase maturation GTPase HydF [Porphyromonas asaccharolytica PR426713P-I] gi|312924136|gb|EFR34925.1| hydrogenase maturation GTPase HydF [Porphyromonas asaccharolytica PR426713P-I] Length = 399 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 45/170 (26%), Positives = 86/170 (50%), Gaps = 23/170 (13%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRE 279 +++++G N+GKS+LFN L +++ ++V+D GTT D + +L + + DT G+ + Sbjct: 13 RLLLVGQVNSGKSTLFNRLLRQERSLVSDQAGTTTDSVEKLFELPSVGPILLVDTPGLAD 72 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP-------KNIDFIFIGTKSDL- 331 D + E + T L + +ADL+L L ++ + + P N+ + I ++DL Sbjct: 73 -DTPLGAERQRVTQLALSSADLVLYL--LSCEDSLDTPIIAALRKANVPTLPIIARADLP 129 Query: 332 -YSTYTEEYDHLISSF----------TGEGLEELINKIKSILSNKFKKLP 370 S++ E + ++ F E L+ L+ KIK +L N + P Sbjct: 130 EQSSWLERQEEIVHCFGHAPLSLRQNDDESLDTLLEKIKQMLHNVSEPTP 179 >gi|308535355|ref|YP_003933744.1| GTP-binding protein Era [Geobacter bemidjiensis Bem] gi|308052700|gb|ADO00832.1| LOW QUALITY PROTEIN: GTP-binding protein Era [Geobacter bemidjiensis Bem] Length = 297 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 50/193 (25%), Positives = 84/193 (43%), Gaps = 22/193 (11%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R+G+ + I+G N GKS+L N + + + I +D P TTR+ + ++ G + DT G Sbjct: 7 RSGF-VSIVGRPNVGKSTLLNRILGEKLMITSDKPQTTRNRIKGIHNVPGGQIVFIDTPG 65 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL--------KEINSKKEISFPKNIDFIFIGTK 328 I + K + V+ DLIL L KE KE+ + I + K Sbjct: 66 IHRAKSRLNKFMVDEALSSVQGVDLILFLVDGAVDPEKEAGMIKEVLSGVDAPVILVMNK 125 Query: 329 SDL---------YSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375 DL S Y + Y +S+ TG+G+E+L+ + +L P I + Sbjct: 126 IDLVPKGELLERMSCYGDTYPFKEIIPVSAGTGDGVEQLVQLVHGLLPEGPCYFPDDILT 185 Query: 376 HKRHLYHLSQTVR 388 + +++ VR Sbjct: 186 DVPERFIVAEIVR 198 >gi|260428010|ref|ZP_05781989.1| ribosome-associated GTPase EngA [Citreicella sp. SE45] gi|260422502|gb|EEX15753.1| ribosome-associated GTPase EngA [Citreicella sp. SE45] Length = 487 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 41/66 (62%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I ++G NAGKS+L N + +D + G TRD +++ LD +G ++I DTAG+R+ Sbjct: 203 QIAVVGRPNAGKSTLINKILGEDRLLTGPEAGITRDAISVRLDWDGTPMRIFDTAGMRKR 262 Query: 281 DDIVEK 286 I EK Sbjct: 263 AKIQEK 268 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 1/87 (1%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 + + I+G N GKS+LFN L + +A+V D PG TRD+ + L + DTAG+ E Sbjct: 3 FSLAIVGRPNVGKSTLFNRLVGRRLALVDDQPGVTRDLREGEGKLGDLRFTVIDTAGLEE 62 Query: 280 -TDDIVEKEGIKRTFLEVENADLILLL 305 TD+ ++ + T V+ AD+ L + Sbjct: 63 ATDESLQGRMRRLTERAVDMADVCLFM 89 >gi|257791363|ref|YP_003181969.1| GTP-binding proten HflX [Eggerthella lenta DSM 2243] gi|257475260|gb|ACV55580.1| GTP-binding proten HflX [Eggerthella lenta DSM 2243] Length = 436 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 48/186 (25%), Positives = 84/186 (45%), Gaps = 21/186 (11%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIR 278 +K+ + G++NAGKSSL N L DV + D T D T +L EG + ++DT G Sbjct: 217 FKVALAGYTNAGKSSLLNRLTNADV-LAYDKLFATLDSTTRKFELPEGREITVTDTVGFI 275 Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEIS---------FPKNIDFIFIG 326 + E K T E+ ADL+L + + +S + +I+ +++ + + Sbjct: 276 QKLPTTLIEAFKSTLDEITGADLVLHVVDASSDEYEAQIAAVEDVLGQIHAQDLSRVLVF 335 Query: 327 TKSDLYS-------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379 K DL +S+ TGEG+ EL+ + + S + + L IP ++ Sbjct: 336 NKCDLLGEERLGALKARHPQAQFVSAATGEGVGELVEHVARVASAQDEHLDVLIPYNRGD 395 Query: 380 LYHLSQ 385 L ++ Sbjct: 396 LVSVAH 401 >gi|153809519|ref|ZP_01962187.1| hypothetical protein BACCAC_03837 [Bacteroides caccae ATCC 43185] gi|149127827|gb|EDM19050.1| hypothetical protein BACCAC_03837 [Bacteroides caccae ATCC 43185] Length = 408 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 2/88 (2%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276 N I + G N+GKSSL NAL +D A+V+D PGTT D + +++ G DT G Sbjct: 10 NRLHIALFGRRNSGKSSLINALTGQDTALVSDTPGTTTDPVAKAMEIHGIGPCLFIDTPG 69 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILL 304 + ++ + I+RT+ VE D+ +L Sbjct: 70 FDDEGEL-GRMRIERTWKAVEKTDMAIL 96 >gi|301299471|ref|ZP_07205746.1| ribosome-associated GTPase EngA [Lactobacillus salivarius ACS-116-V-Col5a] gi|300852934|gb|EFK80543.1| ribosome-associated GTPase EngA [Lactobacillus salivarius ACS-116-V-Col5a] Length = 436 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN LA + ++IV D PG TRD + + G+ + DT GI D Sbjct: 6 VAIVGRPNVGKSTIFNRLAGERISIVEDTPGVTRDRIYARTEWLGHPFNLIDTGGIDIGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + ++ + +E AD+I+ + Sbjct: 66 EPFLTQITEQAEIAIEEADVIIFV 89 Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 32/98 (32%), Positives = 56/98 (57%), Gaps = 6/98 (6%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRE 279 K +G N GKSSL NA+ ++ IV++I GTTRD + + E G + DTAGIR+ Sbjct: 176 KFSFIGRPNVGKSSLVNAILGENRVIVSNIEGTTRDAIDTRFETEDGTKYTMIDTAGIRK 235 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEI 314 + EK + R ++ +D++ ++ +N++++I Sbjct: 236 KGKVYENTEKYSVLRAMRAIDRSDVVCVV--LNAEEDI 271 >gi|146340695|ref|YP_001205743.1| GTP-binding protein EngA [Bradyrhizobium sp. ORS278] gi|166224310|sp|A4YUE1|DER_BRASO RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|146193501|emb|CAL77517.1| GTP-binding protein, essential for cell growth [Bradyrhizobium sp. ORS278] Length = 456 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 43/179 (24%), Positives = 80/179 (44%), Gaps = 29/179 (16%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G NAGKS+L N L ++ + + GTTRD + ++++ +G +I DTAG+R Sbjct: 186 RVAIVGRPNAGKSTLINHLLGEERLLTSPEAGTTRDSIAVEVEWKGRGFRIFDTAGLRRR 245 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNID--------FIFIGTKS 329 I +EK + V A++++L+ + ++ E + D + K Sbjct: 246 SRIEEKLEKLSVADALRAVRFAEVVVLMLDAQNRFEEQDLRIADLVEREGRALVLAVNKW 305 Query: 330 DLY-------STYTEEYDHL-----------ISSFTGEGLEELINKIKSILSNKFKKLP 370 DL S + DH +S GEG++ L+ I + +++P Sbjct: 306 DLMEAQPGQISALRRDADHWLPQITGAPIVAVSGLMGEGIDRLMQAIVEAYAVWNRRVP 364 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 26/60 (43%), Positives = 35/60 (58%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 + I I+G N GKS+LFN L + +A+V D+PG TRD + L I DTAG+ E Sbjct: 3 FTIAIIGRPNVGKSTLFNRLVGQKLALVDDMPGVTRDRREGEAKLHDLHFTIIDTAGLDE 62 >gi|325116849|emb|CBZ52402.1| putative small GTP-binding protein [Neospora caninum Liverpool] Length = 917 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 40/154 (25%), Positives = 72/154 (46%), Gaps = 22/154 (14%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI---- 277 + ++G NAGKS+L N+L +++ +V PGTT D + +G+ ++ DTAG+ Sbjct: 605 VAVIGRPNAGKSTLVNSLLQEERMVVDSQPGTTTDAVGTLWTFQGHPFRLIDTAGVTRGW 664 Query: 278 --RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTY 335 R TD ++E G++ T + NA + +L + + ++ P S++ Sbjct: 665 KMRHTDLLLEA-GLQ-TLRNIRNAQVCILCIDASLARDTGQP--------------ISSH 708 Query: 336 TEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369 HL S G L + K + N+ +KL Sbjct: 709 ELALAHLASEKEGRCLAVCVTKWDLVPENEREKL 742 >gi|4467683|emb|CAB37793.1| GTP-binding protein homologue [Helicobacter pylori] Length = 170 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 32/81 (39%), Positives = 46/81 (56%), Gaps = 1/81 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKSSLFN LA++ + I +D GTTRD + L + V++ DT G+ + D Sbjct: 10 IAILGQPNVGKSSLFNRLARERMPITSDFAGTTRDFNKRKIALNAHEVELLDTGGMAK-D 68 Query: 282 DIVEKEGIKRTFLEVENADLI 302 ++ KE + +DLI Sbjct: 69 ALLSKEIKALNLKAAQMSDLI 89 >gi|317495247|ref|ZP_07953617.1| GTP-binding protein Era [Gemella moribillum M424] gi|316914669|gb|EFV36145.1| GTP-binding protein Era [Gemella moribillum M424] Length = 302 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 51/197 (25%), Positives = 94/197 (47%), Gaps = 24/197 (12%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-IDLDLEGYLVKIS 272 E I+ G+ + I+G NAGKS+L N + K+ +AI++D P TTR+++ + D + +V I Sbjct: 4 EQIKTGF-VTIIGRPNAGKSTLLNNILKQKIAIMSDKPQTTRNIINGVYTDQDSQIVFI- 61 Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------------INSKKEISFP--- 317 DT GI + + +K ++ ++++ L+ IN KE++ P Sbjct: 62 DTPGIHKPKHRLGDYMMKLASSAIQESEIVYLIINAGEKFGPGDQHLINIVKELNVPTFL 121 Query: 318 --KNIDFIFIGTKSDLYSTYTEEYDHL----ISSFTGEGLEELINKIKSILSNKFKKLPF 371 ID I ++ S Y + YD + IS+ ++ L+N K L +K P Sbjct: 122 LINKIDLISPEKLIEIISFYKDLYDFVEIVPISALKSINVDNLLNVTKKYLQLSYKMYPD 181 Query: 372 SIPSHKRHLYHLSQTVR 388 + + + +S+ +R Sbjct: 182 DVITDSPEYFVISEFIR 198 >gi|81428627|ref|YP_395627.1| GTP-binding protein EngA [Lactobacillus sakei subsp. sakei 23K] gi|123564226|sp|Q38WW3|DER_LACSS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|78610269|emb|CAI55318.1| Putative GTP-binding protein [Lactobacillus sakei subsp. sakei 23K] Length = 436 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 4/89 (4%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIRE 279 K ++G N GKSSL NA+ K+D IV+ I GTTRD + E + DTAGIR+ Sbjct: 176 KFSLIGRPNVGKSSLVNAMLKEDRVIVSQIEGTTRDAIDTKFMAENNQEFTMIDTAGIRK 235 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLL 305 + EK + R ++ +D++L++ Sbjct: 236 RGKVYENTEKYAVMRALRAIDRSDVVLVV 264 Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 49/84 (58%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS++FN +A + ++IV D PG TRD + + G+ + DT GI +D Sbjct: 6 IAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYTASEWLGHEFSLIDTGGIEISD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ ++ + ++ AD+I+ L Sbjct: 66 APFMEQIKQQAEIAIDEADVIIFL 89 >gi|260855974|ref|YP_003229865.1| putative GTP-binding protein [Escherichia coli O26:H11 str. 11368] gi|257754623|dbj|BAI26125.1| predicted GTP-binding protein [Escherichia coli O26:H11 str. 11368] gi|323155669|gb|EFZ41841.1| hypothetical protein ECEPECA14_2445 [Escherichia coli EPECa14] Length = 290 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 41/108 (37%), Positives = 58/108 (53%), Gaps = 4/108 (3%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L +S HI + L +I R+ I I+G S AGKSSL NAL + +V V+D+ TR+V Sbjct: 17 LPYSLSRHILE-HLRKITRHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 75 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305 L G+ + I+D G+ E+ D E E + R L DL+L L Sbjct: 76 RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 121 >gi|258516219|ref|YP_003192441.1| GTP-binding protein Era [Desulfotomaculum acetoxidans DSM 771] gi|257779924|gb|ACV63818.1| GTP-binding protein Era [Desulfotomaculum acetoxidans DSM 771] Length = 300 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 33/97 (34%), Positives = 50/97 (51%), Gaps = 1/97 (1%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273 E R+G+ + I+G N GKS+L N + + +AI++D P TTR + L + Y V D Sbjct: 5 EQFRSGF-VAIIGRPNVGKSTLMNRMIGRKIAIMSDKPQTTRHKIYCVLTRDNYQVIFLD 63 Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310 T GI + + + + + DLIL L E NS Sbjct: 64 TPGIHKPKHKLGQHLVDTSLSTFGEVDLILFLVEANS 100 >gi|126739021|ref|ZP_01754715.1| GTP-binding protein EngA [Roseobacter sp. SK209-2-6] gi|126719638|gb|EBA16346.1| GTP-binding protein EngA [Roseobacter sp. SK209-2-6] Length = 489 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 1/87 (1%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 + + I+G N GKS+LFN L K +A+V D PG TRD+ + L + DTAG+ + Sbjct: 3 FTLAIVGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDLREGEAKLGDLRFTVIDTAGLED 62 Query: 280 -TDDIVEKEGIKRTFLEVENADLILLL 305 TD+ +E + T V+ AD+ L + Sbjct: 63 ATDNSLEGRMRRLTERAVDMADICLFM 89 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 40/66 (60%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ ++G NAGKS+L N + +D + G TRD +++ +D G ++I DTAG+R+ Sbjct: 205 QVAVVGRPNAGKSTLINKILGEDRLLTGPEAGITRDAISLQVDWSGTPMRIFDTAGMRKK 264 Query: 281 DDIVEK 286 + EK Sbjct: 265 AKVQEK 270 >gi|91205994|ref|YP_538349.1| GTP-binding protein Era [Rickettsia bellii RML369-C] gi|122425285|sp|Q1RHA4|ERA_RICBR RecName: Full=GTPase Era gi|91069538|gb|ABE05260.1| GTP-binding protein Era [Rickettsia bellii RML369-C] Length = 295 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 83/165 (50%), Gaps = 20/165 (12%) Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 I+ + I+G N+GKS+L N + + ++IVT TTR ++T + L + + DT Sbjct: 5 IQKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLNDTQIILYDTP 64 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILL----LKEINSKKEISFPK----NIDFIFIGT 327 GI E +EK ++ + + +AD+++L LK ++S K N+ +F+ Sbjct: 65 GIFEPKGTLEKAMVRCAWSSLHSADIVMLIIDSLKPLDSITHDILNKLRSLNVVPVFLLN 124 Query: 328 KSDLYSTY--------TEEY-DHL---ISSFTGEGLEELINKIKS 360 K D+ S Y E Y D L IS+ +GE +++L+ I S Sbjct: 125 KIDVESKYIDDTKAFLAENYSDSLLFPISAISGENVDKLLEYITS 169 >gi|325831411|ref|ZP_08164665.1| GTP-binding protein HflX [Eggerthella sp. HGA1] gi|325486665|gb|EGC89113.1| GTP-binding protein HflX [Eggerthella sp. HGA1] Length = 436 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 48/186 (25%), Positives = 84/186 (45%), Gaps = 21/186 (11%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIR 278 +K+ + G++NAGKSSL N L DV + D T D T +L EG + ++DT G Sbjct: 217 FKVALAGYTNAGKSSLLNRLTNADV-LAYDKLFATLDSTTRKFELPEGREITVTDTVGFI 275 Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEIS---------FPKNIDFIFIG 326 + E K T E+ ADL+L + + +S + +I+ +++ + + Sbjct: 276 QKLPTTLIEAFKSTLDEITGADLVLHVVDASSDEYEAQIAAVEDVLGQIHAQDLSRVLVF 335 Query: 327 TKSDLYS-------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379 K DL +S+ TGEG+ EL+ + + S + + L IP ++ Sbjct: 336 NKCDLLGEERLGALKARHPQAQFVSAATGEGVGELVEHVARVASAQDEHLDVLIPYNRGD 395 Query: 380 LYHLSQ 385 L ++ Sbjct: 396 LVSVAH 401 >gi|172034949|ref|YP_001801450.1| ferrous iron transport protein B [Cyanothece sp. ATCC 51142] gi|171696403|gb|ACB49384.1| ferrous iron transport protein B [Cyanothece sp. ATCC 51142] Length = 664 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 71/149 (47%), Gaps = 4/149 (2%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ +LG N GKS+LFN + A V + PG T D+L +++LEG V+ D GI + Sbjct: 19 RVGVLGMPNVGKSTLFNQITGAS-AFVGNWPGVTVDLLEAEVELEGETVEFVDLPGIYDL 77 Query: 281 DDIVEKEGIKRTFLEVENADLIL-LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY 339 + E E + + F E +L+L +L ++I + +G L +E Sbjct: 78 EGYSEDERVVQDFFERFPVNLVLVVLNAGQIDRQIRLALQVK--ALGIPGILILNMVDEA 135 Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKK 368 +H + LEE + +++S K+ + Sbjct: 136 NHFGIDIDSQKLEEKLGMPVALVSAKYNR 164 >gi|171742925|ref|ZP_02918732.1| hypothetical protein BIFDEN_02042 [Bifidobacterium dentium ATCC 27678] gi|283456054|ref|YP_003360618.1| bifunctional cytidylate kinase/GTP-binding protein [Bifidobacterium dentium Bd1] gi|171278539|gb|EDT46200.1| hypothetical protein BIFDEN_02042 [Bifidobacterium dentium ATCC 27678] gi|283102688|gb|ADB09794.1| Bifunctional cytidylate kinase/GTP-binding protein [Bifidobacterium dentium Bd1] Length = 709 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 46/176 (26%), Positives = 77/176 (43%), Gaps = 17/176 (9%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+L N + + A+V D PG TRD ++ D + G K+ DT G Sbjct: 275 LAVVGRPNVGKSTLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADV 334 Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKE-----ISFPKNIDFIFIGTKSDLY 332 + +E + + V+ AD ++L+ + + S E + + + D Sbjct: 335 EGIESAIASQAQMAVQLADAVVLVVDGQVGLTSTDERIVKMLRASGKPVTLAVNKVDDRE 394 Query: 333 STY-TEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380 S Y T E+ + IS+ G G+ EL++ L K F PSH R + Sbjct: 395 SEYLTAEFWKMGMGEPYGISAMHGRGIGELLDVALESLKKAKKTSGFLTPSHLRRV 450 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 41/177 (23%), Positives = 82/177 (46%), Gaps = 27/177 (15%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD----VLTID------LDLEGYLVK 270 ++ ++G N GKSSL N LA ++ ++V D+ GTTRD V+T+D +D G + Sbjct: 449 RVALVGRPNVGKSSLLNQLAHEERSVVNDLAGTTRDPVDEVVTVDGEDWLFIDTAGIKRR 508 Query: 271 ISDTAGIRETDDIVEKEGIKRTFLE---------VENADLILLLKEINSKKEISFPKN-I 320 + +G + + I+R+ L + + DL ++ + +++ + I N Sbjct: 509 LHKLSGAEYFSSLRTQAAIERSELALVLFDASQPISDQDLKVMSQAVDAGRAIVLVFNKW 568 Query: 321 DFIFIGTKSDLYSTYTEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLP 370 D + + + + E+D + +S+ TG L N ++ L + K++P Sbjct: 569 DLMDEFDRQRMERLWKTEFDRVTWAQRVNLSAKTGWHTNRLANAMRGALESWDKRIP 625 >gi|145351972|ref|XP_001420333.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144580567|gb|ABO98626.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 555 Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 58/217 (26%), Positives = 96/217 (44%), Gaps = 55/217 (25%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE----GYLVKISDTAGI 277 + I+G N GKSSL N LA + +IV+D GTTRD +ID +E G + DTAGI Sbjct: 285 VAIIGRPNVGKSSLLNGLAGEARSIVSDFSGTTRD--SIDTLVEDKYTGRKFTLIDTAGI 342 Query: 278 RETDDI------VEKEGIKRTFLEVENADLILLL---KEINSKK-----EISFPKNIDFI 323 R + EK + R ++ AD+++L+ E S++ E + + + Sbjct: 343 RRRTQVKSGTDGAEKLSVGRALQAMKRADVVVLVIDGTEGPSQQDFVLAERATQEGCAIV 402 Query: 324 FIGTKSDL-------YSTYTE---------EYDHLI--SSFTGEGLEELINKIKSILSNK 365 K DL + YT+ EY ++ S+ TG+ ++++++ + N Sbjct: 403 LCINKWDLVDKDTHTMNKYTDDMRLKLRVFEYAEIVYTSALTGQRIQKILDAAQVASENH 462 Query: 366 FK-----------------KLPFSIPSHKRHLYHLSQ 385 K KLP S S K +Y+++Q Sbjct: 463 RKRLTTATLNSVVQEATLWKLPPSRNSRKGKIYYITQ 499 Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 31/57 (54%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 ++ ++G N GKS+LFN L AIV D PG TRD + + + + DT G+ Sbjct: 88 RVAVVGRPNVGKSALFNRLTGTKRAIVYDEPGVTRDRMYVRAYWGEHEFMMVDTGGL 144 >gi|158339018|ref|YP_001520195.1| GTP-binding protein EngA [Acaryochloris marina MBIC11017] gi|189037135|sp|B0C1P2|DER_ACAM1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|158309259|gb|ABW30876.1| GTP-binding protein engA [Acaryochloris marina MBIC11017] Length = 453 Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ ++G N GKSSL NA ++ +IV+ I GTTRD + + + + DTAGIR Sbjct: 178 KVALVGRPNVGKSSLLNAFVGENRSIVSPISGTTRDTIDMVVRRGEQTYRFIDTAGIRRK 237 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 ++ E GI R F + + ++L + Sbjct: 238 KNVSYGPEFFGINRAFKAIRRSQVVLFV 265 >gi|157826642|ref|YP_001495706.1| GTP-binding protein Era [Rickettsia bellii OSU 85-389] gi|189037663|sp|A8GUZ8|ERA_RICB8 RecName: Full=GTPase Era gi|157801946|gb|ABV78669.1| GTP-binding protein Era [Rickettsia bellii OSU 85-389] Length = 295 Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 83/165 (50%), Gaps = 20/165 (12%) Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 I+ + I+G N+GKS+L N + + ++IVT TTR ++T + L + + DT Sbjct: 5 IQKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLNDTQIILYDTP 64 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILL----LKEINSKKEISFPK----NIDFIFIGT 327 GI E +EK ++ + + +AD+++L LK ++S K N+ +F+ Sbjct: 65 GIFEPKGTLEKAMVRCAWSSLHSADIVMLIIDSLKPLDSITHDILNKLRSLNVVPVFLLN 124 Query: 328 KSDLYSTY--------TEEY-DHL---ISSFTGEGLEELINKIKS 360 K D+ S Y E Y D L IS+ +GE +++L+ I S Sbjct: 125 KIDVESKYIDDTKAFLAENYSDSLLFPISAISGENVDKLLEYITS 169 >gi|77919006|ref|YP_356821.1| GTP-binding protein Era [Pelobacter carbinolicus DSM 2380] gi|77545089|gb|ABA88651.1| GTP-binding protein Era [Pelobacter carbinolicus DSM 2380] Length = 303 Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 42/168 (25%), Positives = 80/168 (47%), Gaps = 24/168 (14%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R+G+ + I+G N GKS+L N++ + +AI ++ P TTR+ + + V DT G Sbjct: 12 RSGF-VAIIGRPNVGKSTLLNSVLGQKIAITSNKPQTTRNRILGIYNQPDAQVLFLDTPG 70 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIFIGT 327 + + ++ + + + + D++L+L E N + +++S N+ I + Sbjct: 71 VHKAKGMLNRYMVDQALSTCGDVDVVLMLVEANDRLGGGDDYVLEQVSR-SNVPVILVIN 129 Query: 328 KSD---------LYSTYTEEYDH----LISSFTGEGLEELINKIKSIL 362 K D L YT +Y +S+ TGEG E+L++ + L Sbjct: 130 KVDLIHRPELLPLIEAYTGKYAFSEIIPVSALTGEGTEQLVSSLVKYL 177 >gi|330898613|gb|EGH30032.1| tRNA modification GTPase TrmE [Pseudomonas syringae pv. japonica str. M301072PT] Length = 152 Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 37/95 (38%), Positives = 51/95 (53%), Gaps = 4/95 (4%) Query: 348 GEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDII 405 GEGLE L +K+ + + + S + +RHL L LE A L G +++ Sbjct: 60 GEGLELLREHLKACMGYE-QTSESSFSARRRHLEALRHASDSLEHGRAQLTLAGAG-ELL 117 Query: 406 AENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 AE+LR A +LG+ITG + LL IFS FCIGK Sbjct: 118 AEDLRQAQQALGEITGAFSSDDLLGRIFSSFCIGK 152 >gi|329116373|ref|ZP_08245090.1| ribosome biogenesis GTPase Der [Streptococcus parauberis NCFD 2020] gi|326906778|gb|EGE53692.1| ribosome biogenesis GTPase Der [Streptococcus parauberis NCFD 2020] Length = 436 Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 71/145 (48%), Gaps = 31/145 (21%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRETDD 282 ++G N GKSSL NA+ +D I + + GTTRD + D +G + DTAG+R++ Sbjct: 179 LIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTSFKDEDGQEFTMIDTAGMRKSGK 238 Query: 283 I---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY 339 + EK + R ++ +D++L++ IN+++ I EY Sbjct: 239 VYENTEKYSVMRAMRAIDRSDVVLMV--INAEEGI----------------------REY 274 Query: 340 DHLISSF---TGEGLEELINKIKSI 361 D I+ F G+G+ ++NK ++ Sbjct: 275 DKRIAGFAHEAGKGMIIVVNKWDTL 299 Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN +A + ++IV D+ G TRD + + + DT GI + D Sbjct: 6 VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTTGEWLNRKFSLIDTGGIDDVD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + + ++ AD+I+ + Sbjct: 66 APFMEQIKHQAQIAMDEADVIVFV 89 >gi|86138474|ref|ZP_01057048.1| GTP-binding protein EngA [Roseobacter sp. MED193] gi|85824999|gb|EAQ45200.1| GTP-binding protein EngA [Roseobacter sp. MED193] Length = 489 Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 1/87 (1%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 + + I+G N GKS+LFN L K +A+V D PG TRD+ + L + DTAG+ + Sbjct: 3 FTLAIVGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDLREGEARLGDLRFTVIDTAGLED 62 Query: 280 -TDDIVEKEGIKRTFLEVENADLILLL 305 TD+ +E + T V+ AD+ L + Sbjct: 63 VTDNSLEGRMRRLTERAVDMADICLFM 89 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 41/66 (62%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ ++G NAGKS+L N + +D + G TRD +++ +D G ++I DTAG+R+ Sbjct: 205 QVAVVGRPNAGKSTLINKILGEDRLLTGPEAGITRDAISLQIDWSGTPMRIFDTAGMRKK 264 Query: 281 DDIVEK 286 ++EK Sbjct: 265 AKVLEK 270 >gi|241890023|ref|ZP_04777321.1| GTP-binding protein Era [Gemella haemolysans ATCC 10379] gi|241863645|gb|EER68029.1| GTP-binding protein Era [Gemella haemolysans ATCC 10379] Length = 302 Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 51/197 (25%), Positives = 91/197 (46%), Gaps = 24/197 (12%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-IDLDLEGYLVKIS 272 E I+ G+ + I+G NAGKS+L N + K+ +AI++D P TTR+++ + D + +V I Sbjct: 4 EQIKTGF-VTIIGRPNAGKSTLLNNILKQKIAIMSDKPQTTRNIINGVYTDNDSQIVFI- 61 Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------------INSKKEISFP--- 317 DT GI + + +K ++ ++++ L+ IN KE+ P Sbjct: 62 DTPGIHKPKHRLGDYMMKLASSAIQESEIVYLIINASEKFGPGDQHLINIVKELKVPTFL 121 Query: 318 --KNIDFIFIGTKSDLYSTYTEEYDHL----ISSFTGEGLEELINKIKSILSNKFKKLPF 371 ID I + Y + YD + IS+ ++ L+N K L FK P Sbjct: 122 LINKIDLISPEQLIQIIEFYKDLYDFVEIVPISALKSINVDNLLNTTKKYLQPSFKMYPD 181 Query: 372 SIPSHKRHLYHLSQTVR 388 + + + +S+ +R Sbjct: 182 DVITDSPEYFVISEFIR 198 >gi|154487333|ref|ZP_02028740.1| hypothetical protein BIFADO_01183 [Bifidobacterium adolescentis L2-32] gi|154083851|gb|EDN82896.1| hypothetical protein BIFADO_01183 [Bifidobacterium adolescentis L2-32] Length = 709 Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 49/185 (26%), Positives = 81/185 (43%), Gaps = 21/185 (11%) Query: 217 RNGYKIV----ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272 +NG K V ++G N GKS+L N + + A+V D PG TRD ++ D + G K+ Sbjct: 266 KNGPKPVGVLAVVGRPNVGKSTLVNRILGRRAAVVEDTPGVTRDRVSYDAEWCGTDFKLV 325 Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILL-------LKEINSK--KEISFPKNIDFI 323 DT G + +E + + V+ AD ++L L + + + K + + Sbjct: 326 DTGGWEADVEGIESAIASQAQIAVQLADAVILVVDGLVGLTDTDERIVKMLRAAGKPVTL 385 Query: 324 FIGTKSDLYSTY-TEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375 + D S Y T E+ + IS+ G G+ EL++ L + F PS Sbjct: 386 AVNKVDDRESEYLTAEFWKMGLGEPYGISAMHGRGIGELLDAALDSLKKAERTSGFLTPS 445 Query: 376 HKRHL 380 H R + Sbjct: 446 HLRRV 450 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 47/179 (26%), Positives = 83/179 (46%), Gaps = 31/179 (17%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGI- 277 ++ ++G N GKSSL N LA ++ +V D+ GTTRD + + +D E +L DTAGI Sbjct: 449 RVALVGRPNVGKSSLLNQLAHEERTVVNDLAGTTRDPVDEVVTVDGEDWL--FIDTAGIK 506 Query: 278 RETDDIVEKEGIK--RTFLEVENADLILLL----KEINSKKEISFPKNID----FIFIGT 327 R + E RT +E ++L L+L + I+ + + +D + + Sbjct: 507 RRLHKLSGAEYFSSLRTQAAIERSELALVLFDASQPISDQDLKVMSQAVDAGRCIVLVFN 566 Query: 328 KSDLYST---------YTEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLP 370 K DL + E++ + +S+ TG L N ++ L++ K++P Sbjct: 567 KWDLMDEFDRQRMERLWKTEFNRVTWAQRVNLSAKTGWHTNRLANAMRGALASWDKRIP 625 >gi|88855492|ref|ZP_01130156.1| GTP-binding protein EngA [marine actinobacterium PHSC20C1] gi|88815399|gb|EAR25257.1| GTP-binding protein EngA [marine actinobacterium PHSC20C1] Length = 506 Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 31/107 (28%), Positives = 56/107 (52%), Gaps = 3/107 (2%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ ILG N GKSSL N A ++ +V ++ GTTRD + ++L G + DTAGIR Sbjct: 246 RVAILGRPNVGKSSLLNKTAGEERVVVNELAGTTRDPVDEQIELGGKFWRFVDTAGIRRR 305 Query: 281 DDIVEKE---GIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF 324 + + RT +E A++ +++ +++ + K +D + Sbjct: 306 VALAQGADFYATLRTSAALEKAEVAVVIFDVSQPLSVQDLKIVDLVL 352 Score = 40.8 bits (94), Expect = 0.42, Method: Compositional matrix adjust. Identities = 23/84 (27%), Positives = 39/84 (46%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+L N + + A+V D PG TRD + + I DT G Sbjct: 73 LAIVGRPNVGKSALVNRIIGRREAVVEDTPGVTRDRVNYKAEWNNRHFTIVDTGGWEPDA 132 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + + ++ AD +L + Sbjct: 133 KGIDASVAAQAEIAIDLADAVLFV 156 >gi|157828884|ref|YP_001495126.1| GTP-binding protein EngA [Rickettsia rickettsii str. 'Sheila Smith'] gi|166225852|sp|A8GT93|DER_RICRS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|157801365|gb|ABV76618.1| GTP-binding protein EngA [Rickettsia rickettsii str. 'Sheila Smith'] Length = 447 Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/89 (35%), Positives = 49/89 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L+ + AIV D+PG TRD D + + + DT G+ E Sbjct: 6 ITLVGRPNVGKSTLFNRLSIRKKAIVHDLPGVTRDRKYTDGKIGSFEFLLIDTPGLDEHP 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310 + + K I++T + ADLI + + S Sbjct: 66 NSMGKRLIEQTTKAILEADLICFMVDARS 94 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 36/65 (55%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +IV+ G NAGKS+ NAL + + G TR+ + ID + +K+ DTAG+R+ Sbjct: 181 QIVVSGRPNAGKSTFINALINDERLLTGPEAGITRESIEIDWQYKNNHIKLIDTAGLRKK 240 Query: 281 DDIVE 285 I E Sbjct: 241 STITE 245 >gi|306818602|ref|ZP_07452325.1| ribosome-associated GTPase EngA [Mobiluncus mulieris ATCC 35239] gi|304648775|gb|EFM46077.1| ribosome-associated GTPase EngA [Mobiluncus mulieris ATCC 35239] Length = 526 Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 26/58 (44%), Positives = 38/58 (65%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 ++ ++G N GKSSL N+LA ++V+D PGTTRD + L+L+G DTAGI+ Sbjct: 267 RVALVGRPNVGKSSLLNSLAGSGRSVVSDTPGTTRDPVDEVLELDGKEWVFVDTAGIK 324 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 45/88 (51%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+L N + + VA+V D PG TRD + D D G + DT G Sbjct: 93 VAIVGRPNVGKSTLVNRILGRRVAVVLDEPGVTRDRVIYDADWNGRDFHLIDTGGWDVGV 152 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN 309 ++K + + +E AD+ L + + N Sbjct: 153 KGLDKAVATQAEIAIEMADVSLFVVDAN 180 >gi|307700914|ref|ZP_07637939.1| ribosome-associated GTPase EngA [Mobiluncus mulieris FB024-16] gi|307613909|gb|EFN93153.1| ribosome-associated GTPase EngA [Mobiluncus mulieris FB024-16] Length = 524 Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 26/58 (44%), Positives = 38/58 (65%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 ++ ++G N GKSSL N+LA ++V+D PGTTRD + L+L+G DTAGI+ Sbjct: 265 RVALVGRPNVGKSSLLNSLAGSGRSVVSDTPGTTRDPVDEVLELDGKEWVFVDTAGIK 322 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 45/88 (51%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+L N + + VA+V D PG TRD + D D G + DT G Sbjct: 91 VAIVGRPNVGKSTLVNRILGRRVAVVLDEPGVTRDRVIYDADWNGRDFHLIDTGGWDVGV 150 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN 309 ++K + + +E AD+ L + + N Sbjct: 151 KGLDKAVATQAEIAIEMADVSLFVVDAN 178 >gi|254466194|ref|ZP_05079605.1| GTP-binding protein EngA [Rhodobacterales bacterium Y4I] gi|206687102|gb|EDZ47584.1| GTP-binding protein EngA [Rhodobacterales bacterium Y4I] Length = 487 Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 1/87 (1%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 + + I+G N GKS+LFN L K +A+V D PG TRD+ + L + DTAG+ + Sbjct: 3 FTLAIVGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDLREGEARLGDLRFTVIDTAGLED 62 Query: 280 -TDDIVEKEGIKRTFLEVENADLILLL 305 TD+ +E + T V+ AD+ L + Sbjct: 63 ATDNSLEGRMRRLTERAVDMADICLFM 89 Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 40/66 (60%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ ++G NAGKS+L N + ++ + G TRD +++ ++ G +++ DTAG+R+ Sbjct: 203 QVAVVGRPNAGKSTLINKILGEERLLTGPEAGITRDAISLKINWNGVPMRVFDTAGMRKK 262 Query: 281 DDIVEK 286 + EK Sbjct: 263 AKVQEK 268 >gi|159466536|ref|XP_001691465.1| iron hydrogenase assembly protein [Chlamydomonas reinhardtii] gi|46403155|gb|AAS92601.1| Fe-hydrogenase assembly protein [Chlamydomonas reinhardtii] gi|158279437|gb|EDP05198.1| iron hydrogenase assembly protein [Chlamydomonas reinhardtii] Length = 1151 Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 35/85 (41%), Positives = 50/85 (58%), Gaps = 3/85 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280 I + G NAGKS+L NALA+++ IV PGTT DV T+ L+L K+ DTAG+ E Sbjct: 678 IGVFGVMNAGKSTLVNALAQQEACIVDSTPGTTADVKTVLLELHALGPAKLLDTAGLDEV 737 Query: 281 DDIVEKEGIK--RTFLEVENADLIL 303 + +K+ K T E + A L++ Sbjct: 738 GGLGDKKRRKALNTLKECDVAVLVV 762 >gi|307294125|ref|ZP_07573969.1| ribosome-associated GTPase EngA [Sphingobium chlorophenolicum L-1] gi|306880276|gb|EFN11493.1| ribosome-associated GTPase EngA [Sphingobium chlorophenolicum L-1] Length = 456 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 34/85 (40%), Positives = 45/85 (52%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN L K +A+V D PG TRD L G I DTAG + D Sbjct: 5 VAIVGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDRREGQASLLGVDFTIIDTAGYEDED 64 Query: 282 DIVEKEGIK-RTFLEVENADLILLL 305 ++ +T VENAD+ L + Sbjct: 65 PQTLPGRMRMQTQAAVENADVALFV 89 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 8/93 (8%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-----DLEGYLVKISDTA 275 K+ I+G NAGKS+L N L ++ + G TRD + +D D + V++ DTA Sbjct: 186 KLAIVGRPNAGKSTLINRLLGENRLLTGPEAGITRDSIAVDWQWTSPDGQERPVRLIDTA 245 Query: 276 GIR---ETDDIVEKEGIKRTFLEVENADLILLL 305 G+R + D +EK + V A++++LL Sbjct: 246 GMRKRAKVQDKLEKLAVSDGLNAVNFAEVVVLL 278 >gi|303327684|ref|ZP_07358124.1| GTP-binding protein [Desulfovibrio sp. 3_1_syn3] gi|302862045|gb|EFL84979.1| GTP-binding protein [Desulfovibrio sp. 3_1_syn3] Length = 416 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 46/148 (31%), Positives = 76/148 (51%), Gaps = 14/148 (9%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGIRE 279 I + G NAGKSSL NAL+ + V+IV+D PGTT D + T+++ G +V + DTAG+ + Sbjct: 12 IALFGRRNAGKSSLLNALSGQPVSIVSDTPGTTTDPVEKTLEMAPLGPVVFL-DTAGL-D 69 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKE--INSKKE-----ISFPKNIDFIFIGTKSDLY 332 D + + +R+ + D+ LL+ + I + E I F+ + K+D Sbjct: 70 DDGELGRLRAERSLEIMRRTDVALLVTDGRIWGRTEAAAAARLRSLAIPFVVVRNKADAD 129 Query: 333 STYTEEYDHLISSFTGEGLEELINKIKS 360 S E D + EGL+ + I++ Sbjct: 130 SGAKETTD---APDRPEGLDAAVPVIRA 154 >gi|255292050|dbj|BAH90531.1| GTP-binding protein EngA [uncultured bacterium] Length = 466 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 51/85 (60%), Gaps = 3/85 (3%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---ET 280 ++G NAGKS+L N L + I + +PGTTRD + + + L+G + DTAG+R + Sbjct: 181 VVGRPNAGKSTLINRLLGQSRLIESPLPGTTRDCVRVPVQLDGRDCLLLDTAGLRRRAQV 240 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 + +EK + +T ++ A +++L+ Sbjct: 241 HEAIEKFSVVKTLQAIDLAQVVVLV 265 Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 30/56 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 I +LG N GKS+LFN L + A+V D PG TRD L L + DT G+ Sbjct: 5 IALLGRPNVGKSTLFNRLTRTRDALVADFPGVTRDRLVGSGQLGDRPFWVVDTGGL 60 >gi|87198885|ref|YP_496142.1| GTP-binding protein EngA [Novosphingobium aromaticivorans DSM 12444] gi|123490336|sp|Q2GA15|DER_NOVAD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|87134566|gb|ABD25308.1| Small GTP-binding protein domain [Novosphingobium aromaticivorans DSM 12444] Length = 461 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 36/61 (59%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +++I+G N GKS+LFN L K +A+V D PG TRD D L G I DTAG + Sbjct: 4 QVIIIGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDRRFGDASLLGLDFTIVDTAGWEDE 63 Query: 281 D 281 D Sbjct: 64 D 64 Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust. Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 6/72 (8%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-----EGYL-VKISDT 274 K+ I+G NAGKS+L N L +D + G TRD + ID E Y V++ DT Sbjct: 191 KLAIVGRPNAGKSTLINKLLGEDRLLTGPEAGITRDSIAIDWQWFDPEREAYRPVRLIDT 250 Query: 275 AGIRETDDIVEK 286 AG+R+ + +K Sbjct: 251 AGMRKKAQVTDK 262 >gi|73662580|ref|YP_301361.1| GTP-binding protein EngA [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|123642627|sp|Q49XS9|DER_STAS1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|72495095|dbj|BAE18416.1| putative GTPase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 436 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSL NA+ +D IV+++ GTTRD + + + + DTAG+R+ Sbjct: 177 RLSIIGRPNVGKSSLVNAILGEDRVIVSNVAGTTRDAVDTEYSYDDQDYVLIDTAGMRKK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + EK + R +E +++IL++ Sbjct: 237 GKVYENTEKYSVLRALKAIERSNVILIV 264 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 45/84 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN + + V+IV D PG TRD + + + I DT GI D Sbjct: 6 VAIVGRPNVGKSTIFNRVVGERVSIVEDTPGVTRDRIYSSGEWLTHDFNIIDTGGIEIGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + + + ++ AD+I+ + Sbjct: 66 APFQTQIRAQAEVAIDEADVIIFM 89 >gi|156086578|ref|XP_001610698.1| GTPase [Babesia bovis T2Bo] gi|154797951|gb|EDO07130.1| GTPase, putative [Babesia bovis] Length = 622 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 58/213 (27%), Positives = 98/213 (46%), Gaps = 35/213 (16%) Query: 222 IVILGHSNAGKSSLFNALAKKDV-------AIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274 + +LG SN GKSSLFNALA +V ++V+ PGTTRD + ++G + + DT Sbjct: 3 VTLLGRSNVGKSSLFNALAGSNVSVPKFMKSVVSSNPGTTRDAKYGQIFIKGKRITLVDT 62 Query: 275 AGIRETDDIVEKEGIKRT-----FLEVENA-------DLILLLKEINSKKEISFPKNIDF 322 GI + V G+ + F +E+A DL+L + ++ ++ I+ +D Sbjct: 63 GGI---ESAVMPPGLGSSSCSNRFSILEHALKTAGRSDLVLFV--VDGQEGIT---PLDM 114 Query: 323 IFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFK---KLPFSIPSHKRH 379 D S+ + +++ EG EE + +S+ + P + +H R Sbjct: 115 TIASNLKDQCSSTSSVLKLVVNKLDSEGSEEYYEAVSKCISDCYSLGLGDPIFVSTHDR- 173 Query: 380 LYHLSQTVRYLEMASLNEKDCGLDIIAENLRLA 412 H +Q +R + SLN D+I+ RLA Sbjct: 174 --HGAQRLRSIISKSLNISSG--DVISRLERLA 202 >gi|109123865|ref|XP_001113573.1| PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial-like [Macaca mulatta] Length = 158 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 36/101 (35%), Positives = 52/101 (51%), Gaps = 5/101 (4%) Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFSIP--SHKRHLYHLSQTVRYLEMASLNEKD 399 L+S TGEGL+ L+ ++ L+ P + RH +HL + L KD Sbjct: 61 LLSCLTGEGLDGLLEALRKELAAVCGDPSTGSPLLTRARHQHHLQGCLDALSHYK-PSKD 119 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L + AE LR+A L ++TG E++LDIIF FC+GK Sbjct: 120 --LALAAEALRVARGHLTRLTGGGGTEEILDIIFRDFCVGK 158 >gi|116511562|ref|YP_808778.1| GTP-binding protein EngA [Lactococcus lactis subsp. cremoris SK11] gi|125624594|ref|YP_001033077.1| GTP-binding protein EngA [Lactococcus lactis subsp. cremoris MG1363] gi|123320527|sp|Q030L6|DER_LACLS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|166198724|sp|A2RM49|DER_LACLM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|116107216|gb|ABJ72356.1| Predicted GTPase [Lactococcus lactis subsp. cremoris SK11] gi|124493402|emb|CAL98376.1| putative phosphoglycerate dehydrogenase [Lactococcus lactis subsp. cremoris MG1363] gi|300071385|gb|ADJ60785.1| GTP-binding protein EngA [Lactococcus lactis subsp. cremoris NZ9000] Length = 436 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 57/213 (26%), Positives = 100/213 (46%), Gaps = 40/213 (18%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRE 279 K ++G N GKSSL NA+ +D I + I GTTRD + T +D E + DTAG+R+ Sbjct: 176 KFSLIGRPNVGKSSLINAILGEDRVIASPIAGTTRDAIDTHFVDSEDQEFVMIDTAGMRK 235 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336 + I EK + R ++ +D++L++ IN+++ I Sbjct: 236 SGKIYENTEKYSVMRAMRAIDRSDIVLMV--INAEEGI---------------------- 271 Query: 337 EEYDHLISSF---TGEGLEELINKIKSIL--SNKFKKLPFSIPSHKRHLYHLSQTVRYLE 391 EYD I+ F G+G+ ++NK ++ ++ KK I + + L + + Y+ Sbjct: 272 REYDMRIAGFAHEAGKGILIVVNKWDTLEKDNDTMKKFELEIRTKFKFLDY--APIVYVS 329 Query: 392 MASLNEKDCGLDII-----AENLRLASVSLGKI 419 + + D+I A+NLR++S L + Sbjct: 330 AKTGQRLNKLPDMIKEIHHAQNLRISSSVLNDV 362 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN +A + ++IV DIPG TRD + + I DT GI +D Sbjct: 6 VAIVGRPNVGKSTIFNRIAGERISIVEDIPGVTRDRIYATGEWLTRKFNIIDTGGIELSD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + E + + + AD+I+ + Sbjct: 66 EPFMTEIRAQAEIAMTEADVIIAV 89 >gi|157828030|ref|YP_001494272.1| GTP-binding protein Era [Rickettsia rickettsii str. 'Sheila Smith'] gi|157800511|gb|ABV75764.1| GTP-binding protein Era [Rickettsia rickettsii str. 'Sheila Smith'] Length = 339 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 50/159 (31%), Positives = 82/159 (51%), Gaps = 20/159 (12%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N+GKS+L N + + ++IVT TTR ++T + L+ V + DT GI E Sbjct: 55 VCIIGQPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPK 114 Query: 282 DIVEKEGIKRTFLEVENADLILL-LKEINSKKEISF-------PKNIDFIFIGTKSDLYS 333 +EK ++ + + +ADL+LL + + S +I+ NI IF+ K D+ S Sbjct: 115 GSLEKVMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIIPIFLLNKIDIES 174 Query: 334 TY--------TEEY-DHL---ISSFTGEGLEELINKIKS 360 Y TE Y D L IS+ +G+ ++ L+ I S Sbjct: 175 KYLNDIKAFLTENYPDSLLLPISALSGKNIDGLLEYITS 213 >gi|332299922|ref|YP_004441843.1| small GTP-binding protein [Porphyromonas asaccharolytica DSM 20707] gi|332176985|gb|AEE12675.1| small GTP-binding protein [Porphyromonas asaccharolytica DSM 20707] Length = 399 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 45/170 (26%), Positives = 85/170 (50%), Gaps = 23/170 (13%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRE 279 +++++G N+GKS+LFN L +++ ++V+D GTT D + +L + + DT G+ + Sbjct: 13 RLLLVGQVNSGKSTLFNRLLRQERSLVSDQAGTTTDSVEKLFELPSVGPILLVDTPGLAD 72 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP-------KNIDFIFIGTKSDL- 331 D + E + T L + +ADL+L L ++ + + P N+ + I ++DL Sbjct: 73 -DTPLGAERQRVTQLALSSADLVLYL--LSCEDSLDTPIIAALRKANVPTLPIIARADLP 129 Query: 332 -YSTYTEEYDHLISSF----------TGEGLEELINKIKSILSNKFKKLP 370 S++ E + ++ F E L+ L+ KIK L N + P Sbjct: 130 EQSSWLERQEEIVQCFGHAPLSLRQNDDESLDTLLEKIKQTLHNVSEPTP 179 >gi|296446239|ref|ZP_06888186.1| ribosome-associated GTPase EngA [Methylosinus trichosporium OB3b] gi|296256276|gb|EFH03356.1| ribosome-associated GTPase EngA [Methylosinus trichosporium OB3b] Length = 468 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 1/87 (1%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 + + I+G N GKS+LFN L K +A+V D PG TRD + L I DTAG+ E Sbjct: 6 FTLAIIGRPNVGKSTLFNRLVGKKLALVDDRPGVTRDRREGEARLADLRFTIIDTAGLEE 65 Query: 280 -TDDIVEKEGIKRTFLEVENADLILLL 305 +E +T +E+AD IL + Sbjct: 66 GASATLEGRMRAQTEAAIESADAILFM 92 Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 38/66 (57%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I ++G NAGKS+L N L +D + G TRD + ++ +K+ DTAG+R+ Sbjct: 201 RIAVVGRPNAGKSTLINRLLGEDRLLTGPEAGITRDSIGVEFRWRDREMKLFDTAGLRKR 260 Query: 281 DDIVEK 286 +V+K Sbjct: 261 ARVVDK 266 >gi|295105866|emb|CBL03409.1| GTP-binding protein HflX [Gordonibacter pamelaeae 7-10-1-b] Length = 428 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 49/186 (26%), Positives = 85/186 (45%), Gaps = 21/186 (11%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIR 278 +K+ + G++NAGKSSL N L DV + D T D T +L EG + ++DT G Sbjct: 206 FKVALAGYTNAGKSSLLNRLTNADV-LAYDKLFATLDSTTRKFELPEGREITVTDTVGFI 264 Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFPKNI-------DF--IFIG 326 + E K T E+ ADL+L + + +S + +I+ +++ D + + Sbjct: 265 QKLPTTLIEAFKSTLDEITGADLVLHVVDASSDEYEAQIAAVEDVLGQIEAQDLLRVLVF 324 Query: 327 TKSDLYS-------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379 K DL +S+ TGEG+ EL+ + + S + + L IP ++ Sbjct: 325 NKCDLLDGEQCGALKARHPQAQFVSAATGEGIAELVGHVARVASAQDEHLDVVIPYNRGD 384 Query: 380 LYHLSQ 385 L ++ Sbjct: 385 LVSVAH 390 >gi|269978226|ref|ZP_06185176.1| ribosome-associated GTPase EngA [Mobiluncus mulieris 28-1] gi|269933735|gb|EEZ90319.1| ribosome-associated GTPase EngA [Mobiluncus mulieris 28-1] Length = 547 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 26/58 (44%), Positives = 38/58 (65%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 ++ ++G N GKSSL N+LA ++V+D PGTTRD + L+L+G DTAGI+ Sbjct: 288 RVALVGRPNVGKSSLLNSLAGSGRSVVSDTPGTTRDPVDEVLELDGKEWVFVDTAGIK 345 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 45/88 (51%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+L N + + VA+V D PG TRD + D D G + DT G Sbjct: 114 VAIVGRPNVGKSTLVNRILGRRVAVVLDEPGVTRDRVIYDADWNGRDFHLIDTGGWDVGV 173 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN 309 ++K + + +E AD+ L + + N Sbjct: 174 KGLDKAVATQAEIAIEMADVSLFVVDAN 201 >gi|322420694|ref|YP_004199917.1| GTP-binding protein Era [Geobacter sp. M18] gi|320127081|gb|ADW14641.1| GTP-binding protein Era [Geobacter sp. M18] Length = 297 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 49/196 (25%), Positives = 87/196 (44%), Gaps = 22/196 (11%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273 +I R+G+ + I+G N GKS+L N + + + I +D P TTR+ + ++ G + D Sbjct: 4 KIFRSGF-VSIVGRPNVGKSTLLNRILGEKLMITSDKPQTTRNQIKGIHNVPGGQIVFLD 62 Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLL--------KEINSKKEISFPKNIDFIFI 325 T GI + K ++ V+ DLIL L KE KE+ + I + Sbjct: 63 TPGIHRAKTRLNKFMVEEALSSVQGVDLILFLVDGAFDPEKEAEMIKEVLSGVDAPVILV 122 Query: 326 GTKSDL---------YSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFS 372 K DL + Y E Y +S+ TG+G+++L+ + +L P Sbjct: 123 LNKIDLIPKGELLGRMAIYGETYPFKEIIPVSASTGDGVDQLVQLVHGLLPEGPCYFPDD 182 Query: 373 IPSHKRHLYHLSQTVR 388 I + + +++ +R Sbjct: 183 ILTDVPERFIVAEIIR 198 >gi|153840641|ref|ZP_01993308.1| GTP-binding protein EngA [Vibrio parahaemolyticus AQ3810] gi|149745697|gb|EDM56827.1| GTP-binding protein EngA [Vibrio parahaemolyticus AQ3810] Length = 109 Score = 53.1 bits (126), Expect = 9e-05, Method: Composition-based stats. Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 3/86 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD--VLTIDLDLEGYLVKISDTAGIRE 279 + ++G N GKS+LFN L + A+V D PG TRD LD E + I DT GI Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQARLDEEHEFIVI-DTGGIDG 63 Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305 T++ VE + +++ ++ AD++L L Sbjct: 64 TEEGVETKMAEQSLAAIDEADVVLFL 89 >gi|119025833|ref|YP_909678.1| bifunctional cytidylate kinase/GTP-binding protein [Bifidobacterium adolescentis ATCC 15703] gi|118765417|dbj|BAF39596.1| GTP-binding protein engA [Bifidobacterium adolescentis ATCC 15703] Length = 675 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 49/185 (26%), Positives = 81/185 (43%), Gaps = 21/185 (11%) Query: 217 RNGYKIV----ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272 +NG K V ++G N GKS+L N + + A+V D PG TRD ++ D + G K+ Sbjct: 232 KNGPKPVGVLAVVGRPNVGKSTLVNRILGRRAAVVEDTPGVTRDRVSYDAEWCGTDFKLV 291 Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILL-------LKEINSK--KEISFPKNIDFI 323 DT G + +E + + V+ AD ++L L + + + K + + Sbjct: 292 DTGGWETDVEGIESAIASQAQIAVQLADAVILVVDGLVGLTDTDERIVKMLRAAGKPVTL 351 Query: 324 FIGTKSDLYSTY-TEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375 + D S Y T E+ + IS+ G G+ EL++ L + F PS Sbjct: 352 AVNKVDDRESEYLTAEFWKMGLGEPYGISAMHGRGIGELLDAALDSLKKAERTSGFLTPS 411 Query: 376 HKRHL 380 H R + Sbjct: 412 HLRRV 416 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 47/179 (26%), Positives = 83/179 (46%), Gaps = 31/179 (17%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGI- 277 ++ ++G N GKSSL N LA ++ +V D+ GTTRD + + +D E +L DTAGI Sbjct: 415 RVALVGRPNVGKSSLLNQLAHEERTVVNDLAGTTRDPVDEVVTVDGEDWL--FIDTAGIK 472 Query: 278 RETDDIVEKEGIK--RTFLEVENADLILLL----KEINSKKEISFPKNID----FIFIGT 327 R + E RT +E ++L L+L + I+ + + +D + + Sbjct: 473 RRLHKLSGAEYFSSLRTQAAIERSELALVLFDASQPISDQDLKVMSQAVDAGRCIVLVFN 532 Query: 328 KSDLYST---------YTEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLP 370 K DL + E++ + +S+ TG L N ++ L++ K++P Sbjct: 533 KWDLMDEFDRQRMERLWKTEFNRVTWAQRVNLSAKTGWHTNRLANAMRGALASWDKRIP 591 >gi|227875339|ref|ZP_03993481.1| GTP-binding protein EngA [Mobiluncus mulieris ATCC 35243] gi|227844244|gb|EEJ54411.1| GTP-binding protein EngA [Mobiluncus mulieris ATCC 35243] Length = 517 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 26/58 (44%), Positives = 38/58 (65%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 ++ ++G N GKSSL N+LA ++V+D PGTTRD + L+L+G DTAGI+ Sbjct: 258 RVALVGRPNVGKSSLLNSLAGSGRSVVSDTPGTTRDPVDEVLELDGKEWVFVDTAGIK 315 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 45/88 (51%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+L N + + VA+V D PG TRD + D D G + DT G Sbjct: 84 VAIVGRPNVGKSTLVNRILGRRVAVVLDEPGVTRDRVIYDADWNGRDFHLIDTGGWDVGV 143 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN 309 ++K + + +E AD+ L + + N Sbjct: 144 KGLDKAVATQAEIAIEMADVSLFVVDAN 171 >gi|291000700|ref|XP_002682917.1| small GTPase [Naegleria gruberi] gi|284096545|gb|EFC50173.1| small GTPase [Naegleria gruberi] Length = 644 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 33/94 (35%), Positives = 54/94 (57%), Gaps = 6/94 (6%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL--DLEGYLVKISDTA 275 N ++ I+G SN GKS+L N L ++ + PGTTRD + ++ + G I DTA Sbjct: 367 NIMRLAIIGRSNVGKSTLLNHLIGEERTRTSSTPGTTRDTIEVEAINEKTGQHYLICDTA 426 Query: 276 GIRE---TD-DIVEKEGIKRTFLEVENADLILLL 305 GIR+ TD D +E+ +K T+ ++ A++ L+ Sbjct: 427 GIRKKKHTDTDRIEQMSLKDTYRTIKYANVCCLV 460 Score = 43.5 bits (101), Expect = 0.067, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 4/61 (6%) Query: 198 FLKNDISSHISQGKLGEIIRN--GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255 F N SS+ GK+ +++R+ ++ I+G N GKS+LFN+L + +IV + PG TR Sbjct: 15 FDDNSTSSYA--GKVLKMVRSKKNLRVAIIGRENVGKSTLFNSLLGRQHSIVHNSPGVTR 72 Query: 256 D 256 D Sbjct: 73 D 73 >gi|116515098|ref|YP_802727.1| hypothetical protein BCc_162 [Buchnera aphidicola str. Cc (Cinara cedri)] gi|122285506|sp|Q057R5|ERA_BUCCC RecName: Full=GTPase Era gi|116256952|gb|ABJ90634.1| GTP-binding protein [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 297 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 54/86 (62%), Gaps = 1/86 (1%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI+I+G +N GKS+L N L K +++I++ P TT+ + + + +I D+ G+++ Sbjct: 9 KIIIVGRTNVGKSTLLNKLIKSNISIISRKPNTTQKHIIGIYTYKLFQFEIFDSPGLQDK 68 Query: 281 -DDIVEKEGIKRTFLEVENADLILLL 305 +I+EK+ I+ TF + +D+I+ L Sbjct: 69 YHNIIEKKKIRDTFNLINESDIIIFL 94 >gi|21220251|ref|NP_626030.1| GTP-binding protein EngA [Streptomyces coelicolor A3(2)] gi|256788632|ref|ZP_05527063.1| GTP-binding protein EngA [Streptomyces lividans TK24] gi|289772527|ref|ZP_06531905.1| ribosome-associated GTPase EngA [Streptomyces lividans TK24] gi|10799853|emb|CAC12931.1| putative GTP binding protein [Streptomyces coelicolor A3(2)] gi|289702726|gb|EFD70155.1| ribosome-associated GTPase EngA [Streptomyces lividans TK24] Length = 492 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 27/68 (39%), Positives = 40/68 (58%) Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 G + +I ++G N GKSSL N +A +D +V ++ GTTRD + ++L G K Sbjct: 221 FGTAVGGPRRIALIGRPNVGKSSLLNKVAGEDRVVVNELAGTTRDPVDELIELGGVTWKF 280 Query: 272 SDTAGIRE 279 DTAGIR+ Sbjct: 281 VDTAGIRK 288 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/84 (28%), Positives = 43/84 (51%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+L N + + A+V D PG TRD +T + + G K+ DT G + Sbjct: 56 LAVVGRPNVGKSTLVNRIIGRREAVVEDKPGVTRDRVTYEAEWAGRRFKVVDTGGWEQDV 115 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + +E AD ++ + Sbjct: 116 LGIDASVAAQAEYAIEAADAVVFV 139 >gi|294677824|ref|YP_003578439.1| GTP-binding protein EngA [Rhodobacter capsulatus SB 1003] gi|294476644|gb|ADE86032.1| GTP-binding protein EngA [Rhodobacter capsulatus SB 1003] Length = 499 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 1/87 (1%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR- 278 + + I+G N GKS+LFN L K +A+V D PG TRD+ D L + D+AG+ Sbjct: 3 FTLAIVGRPNVGKSTLFNRLVGKRLALVDDTPGVTRDLREGDARLGDLRFVVIDSAGLEL 62 Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL 305 DD ++ + T VE AD+ L L Sbjct: 63 AEDDSLQGRMRRLTERAVEEADVCLFL 89 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 77/167 (46%), Gaps = 29/167 (17%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE- 279 ++ ++G NAGKS+L N + +D + G TRD +++ G ++I DTAG+R+ Sbjct: 201 QLAVIGRPNAGKSTLINKILGEDRLLTGPEAGITRDAISVTKTFMGTPMRIWDTAGMRKK 260 Query: 280 --TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF--------IFIGTKS 329 D +EK + V A+++++L ++N E+ + DF + K Sbjct: 261 ARVSDKLEKLSVADGLRAVRFAEVVVVLLDVNIPFEVQDLRIADFAETEGRAVVVAANKW 320 Query: 330 DLYSTYT-------EEYDHL-----------ISSFTGEGLEELINKI 358 DL T E ++ L +S+ TG+GL+ L N I Sbjct: 321 DLEEEKTEKLKELRENFERLLPQLRGAPLVTVSAKTGKGLDRLHNAI 367 >gi|258511668|ref|YP_003185102.1| ribosome-associated GTPase EngA [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478394|gb|ACV58713.1| ribosome-associated GTPase EngA [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 444 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 3/86 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G +N GKS+LFN L + V+IV D PG TRD + + G ++ DT GI E D Sbjct: 6 VAIVGRANVGKSTLFNRLVGRRVSIVEDTPGVTRDRIYGKSEWNGVPFRVIDTGGI-EMD 64 Query: 282 DIVEKEGIKR--TFLEVENADLILLL 305 + E + R + ++ AD+IL + Sbjct: 65 EEDEMGNLIRVQAQIAIDEADVILFV 90 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 3/91 (3%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 + +I +G N GKSSL N L ++ +V+ + GTTRD + L+ +G + DTAG+ Sbjct: 175 DAIRIAFIGRPNVGKSSLVNRLLGEERVMVSPVAGTTRDAVDTPLERDGQTYMLVDTAGM 234 Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLL 305 R + +EK + R ++ AD+ ++ Sbjct: 235 RRKGKVYERIEKYSVLRALRALDRADVAFVV 265 >gi|319892465|ref|YP_004149340.1| GTP-binding protein EngA [Staphylococcus pseudintermedius HKU10-03] gi|317162161|gb|ADV05704.1| GTP-binding protein EngA [Staphylococcus pseudintermedius HKU10-03] gi|323464432|gb|ADX76585.1| GTP-binding protein EngA [Staphylococcus pseudintermedius ED99] Length = 436 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ ++G N GKSSL NA+ ++ IV++I GTTRD + EG + DTAG+R+ Sbjct: 177 RLSLIGRPNVGKSSLINAILGEERVIVSNIAGTTRDAIDTVYSYEGQDYVLIDTAGMRKK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + EK + R +E ++++L++ Sbjct: 237 GKVYESTEKYSVLRALKAIERSNVVLVV 264 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 45/84 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN + + V+IV D PG TRD + + + + DT GI D Sbjct: 6 VAIVGRPNVGKSTIFNRIVGERVSIVEDTPGVTRDRIYSSGEWLTHEFNVIDTGGIEIGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + + + ++ AD+I+ + Sbjct: 66 APFQTQIRAQAEIAIDEADVIIFM 89 >gi|167041437|gb|ABZ06189.1| putative GTPase of unknown function [uncultured marine microorganism HF4000_006O13] Length = 332 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 61/223 (27%), Positives = 103/223 (46%), Gaps = 37/223 (16%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTIDLDLEGYLVKISDTA 275 R+GY + ++G N GKS+L NAL + V+IVT P TT+ ++L I + L + + DT Sbjct: 52 RSGY-VAVIGRPNVGKSTLVNALVGEKVSIVTSKPQTTQINILGI-VHLPHAQIMLVDTP 109 Query: 276 GIR--ETDDIVEKEGIKRTFLEVENADLILLLKEINS-KKEISFPK------NIDFIFIG 326 G+ + K+ K T + ADL +++ E+N KKE + N + I Sbjct: 110 GLLSGRGKRLSSKQTRKETRNALAMADLAVVVVEVNRWKKEDDYLMERLGEFNFEKILAV 169 Query: 327 TKSDLYSTYTEEYDHLISSFTGEGLEEL----------INKIKSILSNKFKKLPFSIP-- 374 K DL+ ++ D L S T +E+ I +++S++ LPF P Sbjct: 170 NKIDLFKDKSQILDFLAQSSTKGSFKEIVPISALRDKNITRLRSLME---ANLPFQTPQF 226 Query: 375 -----SHKRHLYHLSQTVRYLEMASLNEK-----DCGLDIIAE 407 + K ++ +S+ VR M L ++ C +D + E Sbjct: 227 SKTTVTDKSTVFRISEIVREKLMKCLRDELPYSLTCEVDHMEE 269 >gi|311064384|ref|YP_003971109.1| GTP-binding protein [Bifidobacterium bifidum PRL2010] gi|310866703|gb|ADP36072.1| GTP-binding protein [Bifidobacterium bifidum PRL2010] Length = 711 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/60 (48%), Positives = 40/60 (66%), Gaps = 4/60 (6%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGIR 278 ++ ++G N GKSSL N LA + A+V D+ GTTRD + TID+D E +L DTAGI+ Sbjct: 451 RVALVGRPNVGKSSLLNQLAGEQRAVVNDLAGTTRDPVDETIDIDGEDWL--FIDTAGIK 508 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 44/176 (25%), Positives = 77/176 (43%), Gaps = 17/176 (9%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+L N + + A+V D PG TRD ++ D + G K+ DT G Sbjct: 277 LAVVGRPNVGKSTLVNRILGRRAAVVEDTPGVTRDRVSYDAEWSGTEFKLVDTGGWEADV 336 Query: 282 DIVEKEGIKRTFLEVENADLILL-------LKEINSK--KEISFPKNIDFIFIGTKSDLY 332 + +E + + V+ +D ++L L + + + K + + + D Sbjct: 337 EGIESAIASQAQIAVQLSDAVILVVDGHVGLTDTDERIVKMLRASGKPVTLAVNKVDDGA 396 Query: 333 STY-TEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380 S Y T E+ L IS+ G G+ +L++ L K F P+H R + Sbjct: 397 SEYLTAEFWKLGMGEPYGISAMHGRGVGDLLDAALDSLRKADKTSGFLTPTHLRRV 452 >gi|310287469|ref|YP_003938727.1| GTP-binding protein [Bifidobacterium bifidum S17] gi|309251405|gb|ADO53153.1| GTP-binding protein [Bifidobacterium bifidum S17] Length = 711 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/60 (48%), Positives = 40/60 (66%), Gaps = 4/60 (6%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGIR 278 ++ ++G N GKSSL N LA + A+V D+ GTTRD + TID+D E +L DTAGI+ Sbjct: 451 RVALVGRPNVGKSSLLNQLAGEQRAVVNDLAGTTRDPVDETIDIDGEDWL--FIDTAGIK 508 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 44/176 (25%), Positives = 77/176 (43%), Gaps = 17/176 (9%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+L N + + A+V D PG TRD ++ D + G K+ DT G Sbjct: 277 LAVVGRPNVGKSTLVNRILGRRAAVVEDTPGVTRDRVSYDAEWSGTEFKLVDTGGWEADV 336 Query: 282 DIVEKEGIKRTFLEVENADLILL-------LKEINSK--KEISFPKNIDFIFIGTKSDLY 332 + +E + + V+ +D ++L L + + + K + + + D Sbjct: 337 EGIESAIASQAQIAVQLSDAVILVVDGHVGLTDTDERIVKMLRASGKPVTLAVNKVDDGA 396 Query: 333 STY-TEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380 S Y T E+ L IS+ G G+ +L++ L K F P+H R + Sbjct: 397 SEYLTAEFWKLGMGEPYGISAMHGRGVGDLLDAALDSLRKADKTSGFLTPTHLRRV 452 >gi|239947026|ref|ZP_04698779.1| ribosome-associated GTPase EngA [Rickettsia endosymbiont of Ixodes scapularis] gi|239921302|gb|EER21326.1| ribosome-associated GTPase EngA [Rickettsia endosymbiont of Ixodes scapularis] Length = 447 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L+ + AIV D+PG TRD + + + + DT G+ E Sbjct: 6 ITLVGRPNVGKSTLFNRLSTRKKAIVHDLPGVTRDRKYTEGKIGSFEFLLIDTPGLEENP 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 D + ++ +++T + ADLI + Sbjct: 66 DSMGEKLMEQTTKAILEADLICFM 89 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 36/65 (55%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +IV+ G NAGKS+ NAL + + G TR+ + ID + +K+ DTAG+R+ Sbjct: 181 QIVVSGRPNAGKSTFINALINDERLLTGPEAGITRESIEIDWQYKNNHIKLIDTAGLRKK 240 Query: 281 DDIVE 285 I E Sbjct: 241 STITE 245 >gi|298387441|ref|ZP_06996993.1| GTP-binding protein [Bacteroides sp. 1_1_14] gi|298259648|gb|EFI02520.1| GTP-binding protein [Bacteroides sp. 1_1_14] Length = 405 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 2/89 (2%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276 N I + G N+GKSSL NAL +D A+V+D PGTT D + +++ G DT G Sbjct: 10 NRLHIALFGKRNSGKSSLINALTGQDTALVSDTPGTTTDPVQKAMEIHGIGPCLFIDTPG 69 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL 305 + ++ + I+ T+ VE D+ LLL Sbjct: 70 FDDEGELGNRR-IECTWKAVEKTDIALLL 97 >gi|269127039|ref|YP_003300409.1| small GTP-binding protein [Thermomonospora curvata DSM 43183] gi|268311997|gb|ACY98371.1| small GTP-binding protein [Thermomonospora curvata DSM 43183] Length = 463 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 12/86 (13%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ +LG N GKSSL N LA ++ +V D+ GTTRD + ++L G + DTAGIR Sbjct: 201 RVALLGRPNVGKSSLLNKLAGENRVVVDDVAGTTRDPVDELIELGGRTWRFIDTAGIR-- 258 Query: 281 DDIVEKEGIKRTFLEVENADLILLLK 306 R + E + AD L+ Sbjct: 259 ----------RRYRESQGADFYATLR 274 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 45/84 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+L N + + A+V D+PG TRD ++ + D G + I DT G Sbjct: 27 VAVVGRPNVGKSTLVNRVLGRREAVVEDVPGVTRDRVSYEADWSGRRLTIVDTGGWLPDA 86 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + ++ L VE AD++L + Sbjct: 87 TGLAAAVAEQARLAVELADVVLFV 110 >gi|224283101|ref|ZP_03646423.1| bifunctional cytidylate kinase/GTP-binding protein [Bifidobacterium bifidum NCIMB 41171] gi|313140250|ref|ZP_07802443.1| bifunctional cytidylate kinase/GTP-binding protein [Bifidobacterium bifidum NCIMB 41171] gi|313132760|gb|EFR50377.1| bifunctional cytidylate kinase/GTP-binding protein [Bifidobacterium bifidum NCIMB 41171] Length = 711 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/60 (48%), Positives = 40/60 (66%), Gaps = 4/60 (6%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGIR 278 ++ ++G N GKSSL N LA + A+V D+ GTTRD + TID+D E +L DTAGI+ Sbjct: 451 RVALVGRPNVGKSSLLNQLAGEQRAVVNDLAGTTRDPVDETIDIDGEDWL--FIDTAGIK 508 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 44/176 (25%), Positives = 77/176 (43%), Gaps = 17/176 (9%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+L N + + A+V D PG TRD ++ D + G K+ DT G Sbjct: 277 LAVVGRPNVGKSTLVNRILGRRAAVVEDTPGVTRDRVSYDAEWSGTEFKLVDTGGWEADV 336 Query: 282 DIVEKEGIKRTFLEVENADLILL-------LKEINSK--KEISFPKNIDFIFIGTKSDLY 332 + +E + + V+ +D ++L L + + + K + + + D Sbjct: 337 EGIESAIASQAQIAVQLSDAVILVVDGHVGLTDTDERIVKMLRASGKPVTLAVNKVDDGA 396 Query: 333 STY-TEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380 S Y T E+ L IS+ G G+ +L++ L K F P+H R + Sbjct: 397 SEYLTAEFWKLGMGEPYGISAMHGRGVGDLLDAALDSLRKADKTSGFLTPTHLRRV 452 >gi|256392245|ref|YP_003113809.1| small GTP-binding protein [Catenulispora acidiphila DSM 44928] gi|256358471|gb|ACU71968.1| small GTP-binding protein [Catenulispora acidiphila DSM 44928] Length = 493 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/68 (39%), Positives = 40/68 (58%) Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270 + GE++ ++ ++G N GKSSL N LA ++ +V GTTRD + +DL G + Sbjct: 221 RFGELMGGPRRVALVGKPNVGKSSLLNKLAGEERVVVDATAGTTRDPVDELIDLGGKTWR 280 Query: 271 ISDTAGIR 278 DTAGIR Sbjct: 281 FVDTAGIR 288 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 31/55 (56%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 + ++G N GKS+L N + + A+V D+PG TRD ++ D G + DT G Sbjct: 57 LAVVGRPNVGKSTLVNRILGRREAVVQDVPGVTRDRVSYDAHWNGRRFSLVDTGG 111 >gi|26006737|sp|Q9EWW8|DER_STRCO RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA Length = 465 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/68 (39%), Positives = 40/68 (58%) Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 G + +I ++G N GKSSL N +A +D +V ++ GTTRD + ++L G K Sbjct: 194 FGTAVGGPRRIALIGRPNVGKSSLLNKVAGEDRVVVNELAGTTRDPVDELIELGGVTWKF 253 Query: 272 SDTAGIRE 279 DTAGIR+ Sbjct: 254 VDTAGIRK 261 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 32/55 (58%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 + ++G N GKS+L N + + A+V D PG TRD +T + + G K+ DT G Sbjct: 29 LAVVGRPNVGKSTLVNRIIGRREAVVEDKPGVTRDRVTYEAEWAGRRFKVVDTGG 83 >gi|297571444|ref|YP_003697218.1| ribosome-associated GTPase EngA [Arcanobacterium haemolyticum DSM 20595] gi|296931791|gb|ADH92599.1| ribosome-associated GTPase EngA [Arcanobacterium haemolyticum DSM 20595] Length = 504 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 44/84 (52%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ILG N GKS+L N + + VA+V D PG TRD + D + G I DT G Sbjct: 69 LAILGRPNVGKSTLVNRIVGQRVAVVQDTPGVTRDRVKYDAEWAGVDFTIMDTGGWEAVV 128 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + ++K + + AD+++L+ Sbjct: 129 EGIDKSVSDSSEQAINEADVVMLV 152 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ ++G N GKSSL N LA + +V ++ GTTRD + ++L+G DTAG+R Sbjct: 243 RVALVGRPNVGKSSLLNQLAGSNRVVVNELAGTTRDPVDEVIELDGQPWTFVDTAGVRRR 302 Query: 281 DDIVEKE---GIKRTFLEVENADLILLL 305 + + RT +E A+L L+L Sbjct: 303 VHLTKGADYYATLRTQSAIEKAELGLVL 330 >gi|313200697|ref|YP_004039355.1| ferrous iron transport protein b [Methylovorus sp. MP688] gi|312440013|gb|ADQ84119.1| ferrous iron transport protein B [Methylovorus sp. MP688] Length = 594 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 1/85 (1%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I +LG N GKS+ FN ++ A V + PG T D++ L L G++V+I D GI + Sbjct: 3 RIALLGMPNTGKSTFFNRVSGAS-ARVGNWPGITVDLMAAKLLLGGHIVEIIDLPGIYDL 61 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 + E + R FLE + DL +++ Sbjct: 62 HGFSDDESVVRHFLENNDVDLAVIV 86 >gi|332666380|ref|YP_004449168.1| GTP-binding protein Era-like-protein [Haliscomenobacter hydrossis DSM 1100] gi|332335194|gb|AEE52295.1| GTP-binding protein Era-like-protein [Haliscomenobacter hydrossis DSM 1100] Length = 298 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 36/99 (36%), Positives = 59/99 (59%), Gaps = 14/99 (14%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R+G+ I I+GH N GKS+L NAL + ++I+T+ P TTR + L E + + +SDT G Sbjct: 3 RSGF-INIIGHPNVGKSTLMNALVGERMSIITNKPQTTRHRIIGILSGEDFQMVLSDTPG 61 Query: 277 IRETDDIVEKEGIK-----RTFLE--VENADLILLLKEI 308 +V+K K +F++ E+ADL+LL+ ++ Sbjct: 62 ------VVDKPAYKMHQAMNSFVQSTFEDADLMLLVTDV 94 >gi|270291293|ref|ZP_06197515.1| ribosome-associated GTPase EngA [Pediococcus acidilactici 7_4] gi|304385042|ref|ZP_07367388.1| ribosome-associated GTPase EngA [Pediococcus acidilactici DSM 20284] gi|270280139|gb|EFA25975.1| ribosome-associated GTPase EngA [Pediococcus acidilactici 7_4] gi|304329236|gb|EFL96456.1| ribosome-associated GTPase EngA [Pediococcus acidilactici DSM 20284] Length = 435 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 3/85 (3%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 ++G N GKSSL NA+ + IV+DI GTTRD + G + DTAG+R+ I Sbjct: 179 LIGRPNVGKSSLVNAILGEQRVIVSDIAGTTRDAIDTRFTSNGDEFVMVDTAGMRKKGKI 238 Query: 284 ---VEKEGIKRTFLEVENADLILLL 305 E+ + R ++N++++L++ Sbjct: 239 YENTERYSVMRAMKAIDNSNVVLVV 263 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN +A + ++IV D PG TRD + + G + DT GI+ + Sbjct: 6 VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYTHSEWLGRKFNLIDTGGIQIGE 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + +E + L + AD+I+ + Sbjct: 66 EPFLEEIRDQAELAINEADVIIFI 89 >gi|253998623|ref|YP_003050686.1| ferrous iron transport protein B [Methylovorus sp. SIP3-4] gi|253985302|gb|ACT50159.1| ferrous iron transport protein B [Methylovorus sp. SIP3-4] Length = 594 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 1/85 (1%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I +LG N GKS+ FN ++ A V + PG T D++ L L G++V+I D GI + Sbjct: 3 RIALLGMPNTGKSTFFNRVSGAS-ARVGNWPGITVDLMAAKLLLGGHIVEIIDLPGIYDL 61 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 + E + R FLE + DL +++ Sbjct: 62 HGFSDDESVVRHFLENNDVDLAVIV 86 >gi|290961544|ref|YP_003492726.1| GTPase [Streptomyces scabiei 87.22] gi|260651070|emb|CBG74191.1| putative GTPase [Streptomyces scabiei 87.22] Length = 488 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/68 (39%), Positives = 40/68 (58%) Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 G + +I ++G N GKSSL N +A ++ +V +I GTTRD + ++L G K Sbjct: 216 FGTAVGGPRRIALIGRPNVGKSSLLNKVANEERVVVNEIAGTTRDPVDELIELGGVTWKF 275 Query: 272 SDTAGIRE 279 DTAGIR+ Sbjct: 276 VDTAGIRK 283 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 32/55 (58%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 + ++G N GKS+L N + + A+V D PG TRD +T + + G K+ DT G Sbjct: 51 LAVVGRPNVGKSTLVNRIIGRREAVVEDKPGVTRDRVTYEAEWAGRRFKVVDTGG 105 >gi|148265040|ref|YP_001231746.1| ferrous iron transport protein B [Geobacter uraniireducens Rf4] gi|146398540|gb|ABQ27173.1| ferrous iron transport protein B [Geobacter uraniireducens Rf4] Length = 662 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/104 (35%), Positives = 54/104 (51%), Gaps = 4/104 (3%) Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259 K S H Q E +G K+V++G+ N GKS LFNAL V V++ PGT+ +V Sbjct: 5 KKKASCHSVQA---EPQSSGKKVVLVGNPNVGKSVLFNALTGSYVT-VSNYPGTSVEVAR 60 Query: 260 IDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303 + G +I DT G+ I E+E + R L E+ D++L Sbjct: 61 GSASIAGGQYQIIDTPGMYSLLPITEEERVAREILLNESPDVVL 104 >gi|67458640|ref|YP_246264.1| GTP-binding protein EngA [Rickettsia felis URRWXCal2] gi|75536894|sp|Q4UMV9|DER_RICFE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|67004173|gb|AAY61099.1| Conserved GTP-binding protein [Rickettsia felis URRWXCal2] Length = 447 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L+ + AIV D+PG TRD + + + + DT G+ E Sbjct: 6 ITLVGRPNVGKSTLFNRLSIRKKAIVHDLPGVTRDRKYTEGKIGSFEFLLIDTPGLEENP 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 D + + I++T + ADLI + Sbjct: 66 DSMGERLIEQTTKAILEADLICFM 89 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 39/71 (54%) Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274 I R+ +IV+ G NAGKS+ NAL + + G TR+ + ID + +K+ DT Sbjct: 175 IKRDCLQIVVSGRPNAGKSTFINALINDERLLTGPEAGITRESIEIDWQYKNNHIKLIDT 234 Query: 275 AGIRETDDIVE 285 AG+R+ I E Sbjct: 235 AGLRKKSTITE 245 >gi|326440452|ref|ZP_08215186.1| GTP-binding protein Der [Streptomyces clavuligerus ATCC 27064] Length = 482 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 40/67 (59%) Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 G + +I ++G N GKSSL N +A+++ +V ++ GTTRD + ++L G K Sbjct: 212 FGTAVGGPRRIALIGRPNVGKSSLLNKVAREERVVVNELAGTTRDPVDELIELGGVTWKF 271 Query: 272 SDTAGIR 278 DTAGIR Sbjct: 272 VDTAGIR 278 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 32/55 (58%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 + ++G N GKS+L N + + A+V D PG TRD +T + + G K+ DT G Sbjct: 47 LAVVGRPNVGKSTLVNRIIGRREAVVEDKPGVTRDRVTYEAEWAGRRFKVVDTGG 101 >gi|188524409|ref|ZP_03004430.1| ribosome-associated GTPase EngA [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|198273778|ref|ZP_03206312.1| ribosome-associated GTPase EngA [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|195660088|gb|EDX53468.1| ribosome-associated GTPase EngA [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|198249533|gb|EDY74315.1| ribosome-associated GTPase EngA [Ureaplasma urealyticum serovar 4 str. ATCC 27816] Length = 442 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/89 (38%), Positives = 45/89 (50%), Gaps = 3/89 (3%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 +K I+G N GKSSL N + + IV G+TRD + D I DTAG+R Sbjct: 175 FKFCIIGRPNVGKSSLTNTILGEQRMIVNPEAGSTRDSIDNDFSYHNKKYTIIDTAGVRR 234 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLL 305 I VEK + RT +E + LILL+ Sbjct: 235 KGKIVEAVEKYAVLRTQKAIERSQLILLV 263 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 6/87 (6%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK---ISDTAGIR 278 I I+G N GKSSLFN + + +IV D PG TRD + D+ +L + + DT GI Sbjct: 4 IAIVGKPNVGKSSLFNRILMRRKSIVDDQPGVTRDRI---YDVGNWLTRDFMLIDTGGII 60 Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL 305 ++D + ++ + A+ I+ L Sbjct: 61 SSEDTYQDNINEQVLFAINEANTIIFL 87 >gi|126659601|ref|ZP_01730732.1| ferrous iron transport protein B [Cyanothece sp. CCY0110] gi|126619144|gb|EAZ89882.1| ferrous iron transport protein B [Cyanothece sp. CCY0110] Length = 668 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/168 (26%), Positives = 77/168 (45%), Gaps = 8/168 (4%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ ++G N GKS+LFN + A V + PG T D+L +++L G V+ D GI + Sbjct: 20 RVSVMGMPNVGKSTLFNQITGAS-AFVGNWPGVTVDLLEAEVELNGKTVEFVDLPGIYDL 78 Query: 281 DDIVEKEGIKRTFLEVENADLIL-LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY 339 + E E + + F E +L+L +L ++I + +G L +E Sbjct: 79 EGYSEDERVVQGFFERFPINLVLVVLNAGQIDRQIRLALQVK--ALGIPGMLILNMADEA 136 Query: 340 DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYH-LSQT 386 +H E LEE + ++S K+ + I K + H LSQ+ Sbjct: 137 EHFNIKINAEKLEEKLGMPVVLVSAKYNR---GIIQAKHRISHVLSQS 181 >gi|145489801|ref|XP_001430902.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124398003|emb|CAK63504.1| unnamed protein product [Paramecium tetraurelia] Length = 607 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 36/109 (33%), Positives = 53/109 (48%), Gaps = 4/109 (3%) Query: 169 RSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHS 228 R F +A+ ED + + + N I + K+ I K +RN + I+G Sbjct: 252 REFDQAN---PNPEDNSDLDDENIANPI-YTKSPIQEKQGVSKENLQLRNPIMLSIMGRQ 307 Query: 229 NAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 N GKSSL N L +D I PGTTRD ++ +G +++ DTAGI Sbjct: 308 NVGKSSLVNTLLGEDRVIADPTPGTTRDPISTFWVYKGQKIQLVDTAGI 356 >gi|256372122|ref|YP_003109946.1| small GTP-binding protein [Acidimicrobium ferrooxidans DSM 10331] gi|256008706|gb|ACU54273.1| small GTP-binding protein [Acidimicrobium ferrooxidans DSM 10331] Length = 429 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/159 (25%), Positives = 68/159 (42%), Gaps = 17/159 (10%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++VI+G N GKSSLFN + + A+V + P TRD +D EG + I DT G Sbjct: 3 RVVIVGRPNVGKSSLFNRVVGRREAVVEERPKVTRDAKEATIDWEGAPLAIVDTGGYLAG 62 Query: 281 DDIVEKEGIKRTFLEVENADLILLL--------KEINSKKEISFPKNIDFIFIGTKSDLY 332 D ++ + ADL L++ +E + + + I + K D Sbjct: 63 ADGLDAAVSAAVEAALRRADLALVVVDARVPPTEEDAAIARVVRRAKVPSILVANKVDSP 122 Query: 333 STYTEEYDHL---------ISSFTGEGLEELINKIKSIL 362 ++HL +S+ G G+ EL++ + L Sbjct: 123 GHEPAIWEHLALGVGEPVPVSAMHGRGVFELLDLVARRL 161 Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 3/83 (3%) Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DD 282 G N GKSSLFN L + AIV D PGTT D L ++ + ++ DTAG+R + Sbjct: 183 GRPNVGKSSLFNRLVGEPRAIVYDQPGTTVDTLDTVVETDEGRIRFVDTAGLRRRSRYES 242 Query: 283 IVEKEGIKRTFLEVENADLILLL 305 E + RT ++ AD+ LL+ Sbjct: 243 GTEYFSMVRTLAAIDAADVSLLV 265 >gi|284031167|ref|YP_003381098.1| small GTP-binding protein [Kribbella flavida DSM 17836] gi|283810460|gb|ADB32299.1| small GTP-binding protein [Kribbella flavida DSM 17836] Length = 460 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 49/177 (27%), Positives = 83/177 (46%), Gaps = 27/177 (15%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSL N +AK+D +V+D+ GTT D + + L G + DTAGIR Sbjct: 200 RVAIVGKPNVGKSSLLNKVAKEDRVVVSDVSGTTVDPVDELITLAGRQWRFIDTAGIRRK 259 Query: 281 DDIV---EKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNID-----FIFIGTKS 329 V E RT +E A++++++ E +++++ ++ + K Sbjct: 260 VKNVQGHEYYASLRTNSAIERAEVVVVVIDASEPMTEQDLRIMNTVEEAGKALVIAYNKW 319 Query: 330 DLYST----YTE-EYDH-----------LISSFTGEGLEELINKIKSILSNKFKKLP 370 DL Y E E D IS+ TG +E+L+ I++ L ++P Sbjct: 320 DLVDEDRRYYLEREIDRDLVQFRWAPRVNISALTGRHMEKLVPAIEAALDGWQTRVP 376 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 31/55 (56%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 + I+G N GKS+L N + + A+V D PG TRD ++ D D G + DT G Sbjct: 27 LAIVGRPNVGKSTLVNRIIGRREAVVEDTPGVTRDRVSYDADWAGRAFTVVDTGG 81 >gi|330504675|ref|YP_004381544.1| GTP-binding protein EngA [Pseudomonas mendocina NK-01] gi|328918961|gb|AEB59792.1| GTP-binding protein EngA [Pseudomonas mendocina NK-01] Length = 492 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/92 (31%), Positives = 53/92 (57%), Gaps = 3/92 (3%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 ++G K+ I+G N GKS+L N + ++ IV D GTTRD + I + + + DTAG Sbjct: 194 KDGIKLAIIGRPNVGKSTLVNRMLGEERVIVYDQAGTTRDSIYIPFERDDEKYTLIDTAG 253 Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLL 305 +R I VEK + +T ++++++++ + Sbjct: 254 VRRRGKIFEAVEKFSVVKTLQAIQDSNVVVFV 285 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L + AIV D+ G TRD + +G + DT GI + Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDAIVGDLSGLTRDRQYGEAKWQGRTYIVIDTGGISGDE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + ++ + +++ +E AD +L L Sbjct: 65 EGIDAKMAEQSLQAIEEADAVLFL 88 >gi|184201166|ref|YP_001855373.1| GTP-binding protein EngA [Kocuria rhizophila DC2201] gi|183581396|dbj|BAG29867.1| GTP-binding protein EngA [Kocuria rhizophila DC2201] Length = 499 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 46/88 (52%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+L N + + A+V D PG TRD ++ + G + DT G + Sbjct: 64 VAVVGRPNVGKSTLVNRVIGRREAVVEDTPGVTRDRVSYKAEWNGKNFTLVDTGGWEQDA 123 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN 309 + K + L V+NAD +LL+ ++ Sbjct: 124 KGINKRVADQAELAVQNADAVLLVLDVT 151 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/58 (44%), Positives = 34/58 (58%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 ++ ++G N GKSSL N LA D +V D GTTRD + + L G + DTAGIR Sbjct: 238 RVALIGRPNVGKSSLLNKLAGSDRVVVDDTAGTTRDPVDEIVMLGGEPWRFIDTAGIR 295 >gi|146308511|ref|YP_001188976.1| GTP-binding protein EngA [Pseudomonas mendocina ymp] gi|166225842|sp|A4XY28|DER_PSEMY RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|145576712|gb|ABP86244.1| small GTP-binding protein [Pseudomonas mendocina ymp] Length = 492 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/92 (31%), Positives = 53/92 (57%), Gaps = 3/92 (3%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 ++G K+ I+G N GKS+L N + ++ IV D GTTRD + I + + + DTAG Sbjct: 194 KDGIKLAIIGRPNVGKSTLVNRMLGEERVIVYDQAGTTRDSIYIPFERDDEKYTLIDTAG 253 Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLL 305 +R I VEK + +T ++++++++ + Sbjct: 254 VRRRGKIFEAVEKFSVVKTLQAIQDSNVVVFV 285 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L + AIV D+ G TRD + +G + DT GI + Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDAIVGDLSGLTRDRQYGEAKWQGRTYIVIDTGGISGDE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + ++ + +++ +E AD +L L Sbjct: 65 EGIDAKMAEQSLQAIEEADAVLFL 88 >gi|110679080|ref|YP_682087.1| GTP-binding protein EngA [Roseobacter denitrificans OCh 114] gi|123065686|sp|Q169E2|DER_ROSDO RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|109455196|gb|ABG31401.1| GTP-binding protein [Roseobacter denitrificans OCh 114] Length = 492 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 1/87 (1%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 + + I+G N GKS+LFN L K +A+V D PG TRD+ L + DTAG+ + Sbjct: 3 FTLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGAARLADLRFTVIDTAGLED 62 Query: 280 -TDDIVEKEGIKRTFLEVENADLILLL 305 TDD ++ + T V+ AD+ L + Sbjct: 63 VTDDSLQGRMRRLTERAVDMADICLFM 89 Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 5/71 (7%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-----YLVKISDTA 275 ++ ++G NAGKS+L N + +D + G TRD +++ D G ++I DTA Sbjct: 202 QVAVVGRPNAGKSTLVNQILGEDRLLTGPEAGITRDAISLRTDWVGPEGDVIPMRIFDTA 261 Query: 276 GIRETDDIVEK 286 G+R+ + EK Sbjct: 262 GMRKKAKVQEK 272 >gi|78223647|ref|YP_385394.1| ferrous iron transport protein B [Geobacter metallireducens GS-15] gi|78194902|gb|ABB32669.1| Ferrous iron transport protein B [Geobacter metallireducens GS-15] Length = 663 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 1/86 (1%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 G ++ ++G+ N GKS LFNAL VA V++ PGT+ +V +EG +I DT G+ Sbjct: 20 GGKRVALVGNPNVGKSVLFNALTGAYVA-VSNYPGTSVEVSRGSTTIEGEQYEIIDTPGM 78 Query: 278 RETDDIVEKEGIKRTFLEVENADLIL 303 I E+E + R L E D++L Sbjct: 79 YSILPITEEERVAREILLGERPDVVL 104 >gi|116749242|ref|YP_845929.1| small GTP-binding protein [Syntrophobacter fumaroxidans MPOB] gi|189037168|sp|A0LJ92|DER_SYNFM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|116698306|gb|ABK17494.1| small GTP-binding protein [Syntrophobacter fumaroxidans MPOB] Length = 446 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 ++ ILG N GKS+L N L IV+ +PGTTRD + + G + DTAGIR Sbjct: 180 RVSILGRPNVGKSTLVNHLLGAPRVIVSPVPGTTRDAVDSHIVKAGQEYVLIDTAGIRRK 239 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305 T + +EK I + VE + +++LL Sbjct: 240 GRTREKLEKISIIKALQSVERSHVVVLL 267 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 1/90 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN ++K + A+V D+PG TRD + I DTAG D Sbjct: 4 VAIVGRPNVGKSTLFNRISKDNSALVDDLPGVTRDRNYARVSWNDKPFVIIDTAGFVGQD 63 Query: 282 DIVEKEGIK-RTFLEVENADLILLLKEINS 310 +E + + L ++ AD++L + + + Sbjct: 64 TSAFEELTREQILLALDEADILLFVADAKT 93 >gi|262038068|ref|ZP_06011473.1| GTP-binding protein Era [Leptotrichia goodfellowii F0264] gi|261747888|gb|EEY35322.1| GTP-binding protein Era [Leptotrichia goodfellowii F0264] Length = 304 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/104 (35%), Positives = 60/104 (57%), Gaps = 7/104 (6%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT--IDLDLEGYLVKI 271 EI+++G+ I I+G N GKS+L N L K+ VAIV+D GTTRD + +++ Y+ Sbjct: 6 EIMKSGF-IAIVGRPNVGKSTLMNKLVKEKVAIVSDKAGTTRDQIKGIVNIGENQYI--F 62 Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 DT GI + ++ + + + N DLI+ + ++ KEIS Sbjct: 63 VDTPGIHKPKHLLGEHMTEIALETLSNVDLIMFM--LDGTKEIS 104 >gi|222528496|ref|YP_002572378.1| small GTP-binding protein [Caldicellulosiruptor bescii DSM 6725] gi|222455343|gb|ACM59605.1| small GTP-binding protein [Caldicellulosiruptor bescii DSM 6725] Length = 403 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 52/162 (32%), Positives = 85/162 (52%), Gaps = 21/162 (12%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTAGIRE 279 I I G NAGKSSL NA+ + +AIV+D+PGTT D + +++ G +V I DTAGI + Sbjct: 12 IAIFGKRNAGKSSLINAITNQPIAIVSDMPGTTTDPVYKSMEILPLGPVVLI-DTAGI-D 69 Query: 280 TDDIVEKEGIKRTFLEVENADL-ILLLKEINS----KKEISF--PKNIDFIFIGTKSDLY 332 + I+ K I++T + D+ IL++ +I+ K+ + K + I + K D Sbjct: 70 DEGILGKLRIEKTLEVLNKTDIAILVVSDIDDFTYEKQLVKLFDEKKVPRIGVLNKIDKD 129 Query: 333 STYTEEYDHLISSF----------TGEGLEELINKIKSILSN 364 Y E+ L SS T +G++EL N + ++ + Sbjct: 130 PNYKEKLSFLQSSLGMPFLAVSCATLKGIDELKNALSKLVPD 171 >gi|254439207|ref|ZP_05052701.1| GTPase, putative [Octadecabacter antarcticus 307] gi|198254653|gb|EDY78967.1| GTPase, putative [Octadecabacter antarcticus 307] Length = 496 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 1/87 (1%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 + + I+G N GKS+LFN L K +A+V D PG TRD+ L + DTAG+ E Sbjct: 3 FTLAIVGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDLREGAARLGDLRFTVIDTAGLEE 62 Query: 280 -TDDIVEKEGIKRTFLEVENADLILLL 305 TD+ ++ T VE AD+ L + Sbjct: 63 ATDESLQGRMRALTERAVEMADVCLFM 89 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 4/70 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL----EGYLVKISDTAG 276 +I ++G NAGKS+L N + +D + G TRD +++ +D V+I DTAG Sbjct: 200 QIAVVGRPNAGKSTLINQILGEDRLLTGPEAGITRDAISVQMDWGPESATVPVRIFDTAG 259 Query: 277 IRETDDIVEK 286 IR+ + EK Sbjct: 260 IRKRAKVQEK 269 >gi|163733995|ref|ZP_02141436.1| GTP-binding protein EngA [Roseobacter litoralis Och 149] gi|161392531|gb|EDQ16859.1| GTP-binding protein EngA [Roseobacter litoralis Och 149] Length = 492 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 1/87 (1%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 + + I+G N GKS+LFN L K +A+V D PG TRD+ L + DTAG+ + Sbjct: 3 FTLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGAARLADLRFTVIDTAGLED 62 Query: 280 -TDDIVEKEGIKRTFLEVENADLILLL 305 TDD ++ + T V+ AD+ L + Sbjct: 63 VTDDSLQGRMRRLTERAVDMADICLFM 89 Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 5/71 (7%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL---EGYLV--KISDTA 275 ++ ++G N+GKS+L N + +D + G TRD +++ +D EG ++ +I DTA Sbjct: 202 QVAVVGRPNSGKSTLVNQILGEDRLLTGPEAGITRDAISLRMDWVGPEGDVIPMRIFDTA 261 Query: 276 GIRETDDIVEK 286 G+R+ + EK Sbjct: 262 GMRKKAKVQEK 272 >gi|288574808|ref|ZP_06393165.1| GTP-binding protein Era [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570549|gb|EFC92106.1| GTP-binding protein Era [Dethiosulfovibrio peptidovorans DSM 11002] Length = 309 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 3/88 (3%) Query: 219 GYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 GY+ + ++G N GKSSL NAL + IV+ P TTR+ + D+EG + +DT Sbjct: 9 GYRSGVVAVVGRPNVGKSSLVNALLRCKATIVSPKPQTTRNRIRCIADVEGGQIVFTDTP 68 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLIL 303 GI + + + + + +++ADLIL Sbjct: 69 GIHKPQHRLGEAIVDSALVALDDADLIL 96 >gi|20807454|ref|NP_622625.1| GTPase [Thermoanaerobacter tengcongensis MB4] gi|25008432|sp|Q8RB50|ERA_THETN RecName: Full=GTPase Era gi|20515979|gb|AAM24229.1| GTPases [Thermoanaerobacter tengcongensis MB4] Length = 298 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 57/219 (26%), Positives = 100/219 (45%), Gaps = 37/219 (16%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R G+ + ++G +N GKS+L NA+ K+ VAI + P TTR+ + L E Y + DT G Sbjct: 4 RAGF-VALIGRTNVGKSTLLNAILKEKVAITSPKPQTTRNTIRGILTTEDYQIIFVDTPG 62 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKE------------INSKKEISFP-----KN 319 I + + + I+ +++ DLIL + E +++ KE+ P Sbjct: 63 IHKPKSKLSEFMIEVAKRTLKDVDLILYMVEPDTSIGPGDRYILDNLKEVDTPVILVVNK 122 Query: 320 IDFIFIGTKSDLYSTYTEEYDH----LISSFTGEGLEELINKIKSIL------------S 363 ID + + + EY+ IS+ G +E L KI S L + Sbjct: 123 IDLVPAERVEEAIKVFKSEYNFKDVVAISASLGTNVEVLKEKIVSFLPEGPRYYLDDYIT 182 Query: 364 NKFKKLPFSIPSHKRHLYHLSQTVR---YLEMASLNEKD 399 ++ +KL + ++ LY L + V Y+E+ S+ E++ Sbjct: 183 DQPEKLIVAEIIREKMLYFLEEEVPHGVYVEVESIKERE 221 >gi|254393241|ref|ZP_05008394.1| GTP-binding protein engA [Streptomyces clavuligerus ATCC 27064] gi|294811807|ref|ZP_06770450.1| GTP-binding protein engA [Streptomyces clavuligerus ATCC 27064] gi|197706881|gb|EDY52693.1| GTP-binding protein engA [Streptomyces clavuligerus ATCC 27064] gi|294324406|gb|EFG06049.1| GTP-binding protein engA [Streptomyces clavuligerus ATCC 27064] Length = 490 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 40/67 (59%) Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 G + +I ++G N GKSSL N +A+++ +V ++ GTTRD + ++L G K Sbjct: 220 FGTAVGGPRRIALIGRPNVGKSSLLNKVAREERVVVNELAGTTRDPVDELIELGGVTWKF 279 Query: 272 SDTAGIR 278 DTAGIR Sbjct: 280 VDTAGIR 286 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 32/55 (58%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 + ++G N GKS+L N + + A+V D PG TRD +T + + G K+ DT G Sbjct: 55 LAVVGRPNVGKSTLVNRIIGRREAVVEDKPGVTRDRVTYEAEWAGRRFKVVDTGG 109 >gi|222151373|ref|YP_002560529.1| GTP-binding protein EngA [Macrococcus caseolyticus JCSC5402] gi|254783159|sp|B9E6L5|DER_MACCJ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|222120498|dbj|BAH17833.1| GTP-binding protein EngA [Macrococcus caseolyticus JCSC5402] Length = 436 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/94 (31%), Positives = 53/94 (56%), Gaps = 2/94 (2%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G +N GKS++FN + + V+IV D PG TRD + + + I DT GI D Sbjct: 6 IAIVGRANVGKSTIFNRIVGERVSIVEDTPGVTRDRIYSSGEWLTHEFNIIDTGGIELGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + +++ + + +E AD+I+ + +N + I+ Sbjct: 66 EPFQEQIRAQAEIAIEEADVIIFM--VNGRDGIT 97 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K ++G N GKSSL NA+ ++ IV+ + GTTRD + E + DTAG+R+ Sbjct: 177 KFSLIGRPNVGKSSLINAILGEERVIVSPVAGTTRDAIDTVYTFENQEYVMIDTAGMRKK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + E+ + R +E ++++L++ Sbjct: 237 GKVYEATERYSVLRALKAIERSNVVLVV 264 >gi|325293656|ref|YP_004279520.1| GTP-binding protein engA [Agrobacterium sp. H13-3] gi|325061509|gb|ADY65200.1| GTP-binding protein engA [Agrobacterium sp. H13-3] Length = 476 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 1/87 (1%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 + + I+G N GKS+LFN L K +A+V D PG TRD D L I DTAG+ + Sbjct: 3 FTVAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGDAKLVDLRFTIIDTAGLEQ 62 Query: 280 T-DDIVEKEGIKRTFLEVENADLILLL 305 + + ++ +T ++ AD+ L + Sbjct: 63 SGPETLQGRMWAQTEAAIDEADVTLFV 89 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 38/66 (57%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G NAGKS+L N +D + G TRD ++++ D G +K+ DTAG+R Sbjct: 206 RVAIIGRPNAGKSTLINRFLGEDRLLTGPEAGITRDSISVEWDWRGRTIKMFDTAGMRRK 265 Query: 281 DDIVEK 286 + EK Sbjct: 266 ARVTEK 271 >gi|323489679|ref|ZP_08094906.1| GTP-binding protein Der [Planococcus donghaensis MPA1U2] gi|323396810|gb|EGA89629.1| GTP-binding protein Der [Planococcus donghaensis MPA1U2] Length = 436 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/110 (29%), Positives = 57/110 (51%), Gaps = 3/110 (2%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L ++++ + Q E N K ++G N GKSSL N+ ++ IV+++ GTTRD + Sbjct: 155 LLDEVAKNFPQDDDEEYPDNVIKFSLIGRPNVGKSSLVNSFLGEERVIVSEVAGTTRDAI 214 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305 + I DTAG+R+ + EK + R +E +D++L++ Sbjct: 215 DTQYEYNEQPYVIIDTAGMRKKGKVYETTEKYSVLRALRAIERSDVVLVV 264 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN + + V+IV DIPG TRD + D + I DT GI D Sbjct: 6 VAIVGRPNVGKSTIFNRVVGERVSIVEDIPGVTRDRIYSSADWLTHEFNIIDTGGIDLRD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + ++ ++ + ++ AD+I+ L Sbjct: 66 EPFLEQIRQQAEIAMDEADVIIFL 89 >gi|171920931|ref|ZP_02932078.1| GTP-binding protein EngA [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|225550855|ref|ZP_03771804.1| GTP-binding protein EngA [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|171903162|gb|EDT49451.1| GTP-binding protein EngA [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|225380009|gb|EEH02371.1| GTP-binding protein EngA [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 442 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/89 (38%), Positives = 45/89 (50%), Gaps = 3/89 (3%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 +K I+G N GKSSL N + + IV G+TRD + D I DTAG+R Sbjct: 175 FKFCIIGRPNVGKSSLTNTILGEQRMIVNPEAGSTRDSIDNDFSYHNKKYTIIDTAGVRR 234 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLL 305 I VEK + RT +E + LILL+ Sbjct: 235 KGKIVEAVEKYAVLRTQKAIERSQLILLV 263 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 6/87 (6%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK---ISDTAGIR 278 I I+G N GKSSLFN + + +IV D PG TRD + D+ +L + + DT GI Sbjct: 4 IAIVGKPNVGKSSLFNRILMRRKSIVDDQPGVTRDRI---YDVGNWLTRDFMLIDTGGII 60 Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL 305 ++D + ++ + A+ I+ L Sbjct: 61 SSEDTYQDNINEQVLFAINEANTIIFL 87 >gi|4220418|gb|AAD12512.1| Homology to initiation factor DnaA X62539 [Mycoplasma genitalium] Length = 91 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 5/84 (5%) Query: 8 IFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKA---SLRYFFGLDGRILDKG 64 IFA++T SA+ IIR SGP +++ I KK RK + + + +D Sbjct: 10 IFALATAPFNSALHIIRFSGPDVYEILNKITNKK--ITRKGMQIQRTWIVDENNKRIDDV 67 Query: 65 LLIVFPSPESFTGEDSAEFHVHGG 88 LL F SP S+TGED E HG Sbjct: 68 LLFKFVSPNSYTGEDLIEISCHGN 91 >gi|332663276|ref|YP_004446064.1| GTP-binding protein engA [Haliscomenobacter hydrossis DSM 1100] gi|332332090|gb|AEE49191.1| GTP-binding protein engA [Haliscomenobacter hydrossis DSM 1100] Length = 434 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/91 (40%), Positives = 50/91 (54%), Gaps = 9/91 (9%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR---DVLTIDLDLEGYLVKISDTAGI 277 + I+G N GKSSL NAL +D IVT+I GTTR D L D E LV DTAGI Sbjct: 176 RFAIVGQPNVGKSSLTNALLGEDRNIVTEIAGTTRDSIDALYTKFDKEFILV---DTAGI 232 Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLL 305 R+ + +E + R +E+ D+ +L+ Sbjct: 233 RKKAKVHENLEFYSVLRAIKAIEDCDVCILM 263 Score = 43.1 bits (100), Expect = 0.091, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 1/90 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 + I+G N GKS+ FN L + +IV +I G TRD G + DT G + + Sbjct: 5 VAIVGRPNVGKSTFFNRLIGERQSIVDNISGVTRDRQYGASYWNGKNFTVVDTGGFVPHS 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310 DD+ E ++ + V+ A +I+ L ++ + Sbjct: 65 DDVFEAAIREQVKIAVDEASVIIFLVDVTT 94 >gi|317124960|ref|YP_004099072.1| ribosome-associated GTPase EngA [Intrasporangium calvum DSM 43043] gi|315589048|gb|ADU48345.1| ribosome-associated GTPase EngA [Intrasporangium calvum DSM 43043] Length = 494 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 5/90 (5%) Query: 189 SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVT 248 S + L+ +L + +S+H + + G ++ ++G N GKSSL N LA + +V Sbjct: 208 SGDALDAVLEVLPQVSAHGAYAQGGP-----RRVALVGRPNVGKSSLLNKLAGSERVVVD 262 Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 + GTTRD + ++L G + DTAGIR Sbjct: 263 SVAGTTRDPVDELIELAGTTWRFVDTAGIR 292 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 33/55 (60%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 + ++G N GKSSL N + ++ A+V D+PG TRD ++ + + G + DT G Sbjct: 62 VAVIGRPNVGKSSLVNRILRRREAVVEDVPGVTRDRVSYEGEWAGRRFTVVDTGG 116 >gi|299821633|ref|ZP_07053521.1| ribosome-associated GTPase EngA [Listeria grayi DSM 20601] gi|299817298|gb|EFI84534.1| ribosome-associated GTPase EngA [Listeria grayi DSM 20601] Length = 447 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K ++G N GKSS+ NAL ++ IV+DI GTTRD + + + DTAG+R+ Sbjct: 188 KFSLIGRPNVGKSSILNALLGEERVIVSDIAGTTRDAIDTSYIYDDQEYIMIDTAGMRKR 247 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + EK + R +E +D++L++ Sbjct: 248 GKVYEGTEKYSVLRAMRAIERSDVVLVV 275 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN + + ++IV D+PG TRD + + G I DT GI +D Sbjct: 17 VAIVGRPNVGKSTIFNRIVGERISIVEDVPGVTRDRIYNSAEWLGKDFNIIDTGGIDLSD 76 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + + + ++ AD+I+ + Sbjct: 77 EPFLDQIRAQAEIAIDEADVIIFI 100 >gi|242278811|ref|YP_002990940.1| small GTP-binding protein [Desulfovibrio salexigens DSM 2638] gi|242121705|gb|ACS79401.1| small GTP-binding protein [Desulfovibrio salexigens DSM 2638] Length = 400 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 50/170 (29%), Positives = 79/170 (46%), Gaps = 26/170 (15%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280 I ++G NAGKSSL NA++ +DVAIV+D PGTT D + +L V DTAG+ ++ Sbjct: 13 ITLVGKRNAGKSSLINAISGQDVAIVSDQPGTTTDPVAKHYELLPLGPVTFYDTAGLDDS 72 Query: 281 DDIVEKEGIKRTFLEVENADLILL-----------LKEINSKKEISFPKNIDFIFIGTKS 329 ++ E IK T + DL L+ +K I+ E+ P + F K+ Sbjct: 73 GEVGELR-IKATNKVMMRTDLALVVIGEDGLTDYEMKLIDKVSELEIPYLVAF----NKN 127 Query: 330 DLYSTYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLP 370 DL + D+ S G +++L I ++ + K+ P Sbjct: 128 DLCEPLESDMDYCRQRGIPFYKTSVLEGCSIDKLKEAIITLAPEEMKRDP 177 >gi|224418108|ref|ZP_03656114.1| GTP-binding protein Era [Helicobacter canadensis MIT 98-5491] gi|253827435|ref|ZP_04870320.1| GTP-binding protein Era [Helicobacter canadensis MIT 98-5491] gi|313141643|ref|ZP_07803836.1| GTP-binding protein Era [Helicobacter canadensis MIT 98-5491] gi|253510841|gb|EES89500.1| GTP-binding protein Era [Helicobacter canadensis MIT 98-5491] gi|313130674|gb|EFR48291.1| GTP-binding protein Era [Helicobacter canadensis MIT 98-5491] Length = 294 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 61/119 (51%), Gaps = 6/119 (5%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R G+ + +LG NAGKS+ NAL + +A+V+ TR + + L E + DT G Sbjct: 4 RAGF-VAVLGRPNAGKSTFLNALLGERLALVSHKANATRKRMNLVLMQEEAQIVFVDTPG 62 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE-----ISFPKNIDFIFIGTKSD 330 I + + ++ + +K +++ DL+L L ++ K + + KN + + TKSD Sbjct: 63 IHKQEKLLNQYMLKEAMQAMQDCDLLLFLAPVSDKIDFYEEFLQSAKNKPHLLLLTKSD 121 >gi|86749568|ref|YP_486064.1| GTP-binding protein EngA [Rhodopseudomonas palustris HaA2] gi|123004191|sp|Q2IXA7|DER_RHOP2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|86572596|gb|ABD07153.1| GTP-binding protein [Rhodopseudomonas palustris HaA2] Length = 459 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/96 (30%), Positives = 54/96 (56%), Gaps = 3/96 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G NAGKS+ N L +D + + GTTRD + ++++ +G +I DTAG+R Sbjct: 189 RVAIVGRPNAGKSTFINRLLGEDRLLTSPEAGTTRDSIAVEVNWKGREFRIFDTAGLRRR 248 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKE 313 I +EK + V A++++L+ + ++ E Sbjct: 249 SRIEEKLEKLSVADALRAVRFAEVVVLMMDSQNRFE 284 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 18/161 (11%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 + I+G N GKS+LFN L + +A+V D PG TRD + L I DTAG+ E Sbjct: 3 FTFAIIGRPNVGKSTLFNRLVGQKLALVDDTPGVTRDRREGEGRLGDLEFTIIDTAGLDE 62 Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPK--NIDFIFIGTKSD 330 + ++T +E AD ++ + + N + F + N + + KS+ Sbjct: 63 GAKGSLTARMQQQTETAIELADALMFVFDARAGLTPNDRAFADFARRANKPVVLVANKSE 122 Query: 331 LYS---TYTEEY-----DHL-ISSFTGEGLEELINKIKSIL 362 + E Y D + IS+ GEGL EL + +++I+ Sbjct: 123 GKAGGIGAMESYALGLGDPVQISAEHGEGLSELYDALRAIM 163 >gi|84496370|ref|ZP_00995224.1| GTP-binding protein EngA [Janibacter sp. HTCC2649] gi|84383138|gb|EAP99019.1| GTP-binding protein EngA [Janibacter sp. HTCC2649] Length = 497 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 33/90 (36%), Positives = 50/90 (55%), Gaps = 5/90 (5%) Query: 189 SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVT 248 S +VL+ IL + D S+ + + G ++ +LG N GKSS+ N LA + +V Sbjct: 209 SGDVLDAILAVLPDKSAVSAYQRGGP-----RRVALLGRPNVGKSSMLNKLAGSERVVVD 263 Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 D+ GTTRD + ++L G + DTAGIR Sbjct: 264 DVAGTTRDPVDEFIELGGKTWRFVDTAGIR 293 Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 10/82 (12%) Query: 229 NAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEG 288 N GKS+L N + + A+V D+PG TRD + D + G + DT G V+ +G Sbjct: 70 NVGKSTLVNRIIGRREAVVEDVPGVTRDRVAYDAEWTGTNFTLVDTGGWS-----VDAKG 124 Query: 289 I-----KRTFLEVENADLILLL 305 I ++ + VE AD +L + Sbjct: 125 IHLRVAEQAEIAVELADAVLFV 146 >gi|160942963|ref|ZP_02090201.1| hypothetical protein FAEPRAM212_00440 [Faecalibacterium prausnitzii M21/2] gi|158445657|gb|EDP22660.1| hypothetical protein FAEPRAM212_00440 [Faecalibacterium prausnitzii M21/2] gi|295103496|emb|CBL01040.1| ribosome-associated GTPase EngA [Faecalibacterium prausnitzii SL3/3] Length = 447 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 51/94 (54%), Gaps = 9/94 (9%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + +AIV D PG TRD + + + G+ + DT GI Sbjct: 6 VAVVGRPNVGKSTLFNKLCGQRLAIVEDTPGITRDRIFANCEWNGHEFLLVDTGGIEPK- 64 Query: 282 DIVEKEGI-----KRTFLEVENADLILLLKEINS 310 EGI ++ + ++ AD I+++ ++ + Sbjct: 65 ---ATEGILAHMREQAQIAIDTADCIIMVTDVRN 95 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 3/87 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKSSL N + ++ IV + GTTRD + +D +DTAG+R+ Sbjct: 179 VAIIGRPNVGKSSLTNRILGENRMIVANEAGTTRDAIDTPVDNAYGKFIFTDTAGLRKRS 238 Query: 282 DI---VEKEGIKRTFLEVENADLILLL 305 +I +E+ + R VE + + L+L Sbjct: 239 NISDGLERYMVVRALAAVERSRVALIL 265 >gi|300818566|ref|ZP_07098774.1| conserved hypothetical protein [Escherichia coli MS 107-1] gi|300528738|gb|EFK49800.1| conserved hypothetical protein [Escherichia coli MS 107-1] Length = 290 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 4/108 (3%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L +S HI + L ++ R+ I I+G S AGKSSL NAL + +V V+D+ TR+V Sbjct: 17 LPYSLSRHILE-HLRKLTRHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 75 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305 L G+ + I+D G+ E+ D E E + R L DL+L L Sbjct: 76 RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 121 >gi|297195224|ref|ZP_06912622.1| GTP-binding protein engA [Streptomyces pristinaespiralis ATCC 25486] gi|297152707|gb|EFH31948.1| GTP-binding protein engA [Streptomyces pristinaespiralis ATCC 25486] Length = 494 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 41/68 (60%) Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 G + +I ++G N GKSSL N +A+++ +V ++ GTTRD + ++L G K Sbjct: 224 FGTAVGGPRRIALIGRPNVGKSSLLNKVAREERVVVNELAGTTRDPVDELIELGGVTWKF 283 Query: 272 SDTAGIRE 279 DTAGIR+ Sbjct: 284 VDTAGIRK 291 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 32/55 (58%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 + ++G N GKS+L N + + A+V D PG TRD +T + + G K+ DT G Sbjct: 59 LAVVGRPNVGKSTLVNRIIGRREAVVEDKPGVTRDRVTYEAEWAGRRFKVVDTGG 113 >gi|296116360|ref|ZP_06834975.1| GTP-binding protein EngA [Gluconacetobacter hansenii ATCC 23769] gi|295977060|gb|EFG83823.1| GTP-binding protein EngA [Gluconacetobacter hansenii ATCC 23769] Length = 470 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 35/59 (59%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +VI G N GKS++FN L + A+V D PG TRD + + G +++ DTAG+ E Sbjct: 16 VVIAGRPNVGKSTIFNRLVGRRQALVADTPGVTRDRKESETTVRGRRIRLIDTAGLEEA 74 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 51/87 (58%), Gaps = 3/87 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G NAGKS+L N L ++ I PG TRD +++ L + +++ DTAG+R Sbjct: 204 RLAIVGRPNAGKSTLLNRLLGEERMITGPEPGLTRDSVSVMLHDDEGPIQLVDTAGLRRK 263 Query: 281 ---DDIVEKEGIKRTFLEVENADLILL 304 D+ +EK + + ++ A++++L Sbjct: 264 ARIDETLEKMSVSASIEALKMAEVVIL 290 >gi|15604520|ref|NP_221038.1| GTP-binding protein EngA [Rickettsia prowazekii str. Madrid E] gi|8928120|sp|Q9ZCP6|DER_RICPR RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|3861214|emb|CAA15114.1| unknown [Rickettsia prowazekii] gi|292572309|gb|ADE30224.1| GTP-binding protein [Rickettsia prowazekii Rp22] Length = 447 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L+ + AIV D+PG TRD D + + + DT G+ E Sbjct: 6 ITLVGRPNVGKSTLFNRLSIRKKAIVHDLPGVTRDRKYTDGKIGSFEFLLIDTPGLEENP 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 D + + + +T + ADLI + Sbjct: 66 DNMGERLMGQTTQAILEADLICFM 89 Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust. Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +IV+ G NAGKS+ NA+ + + G TR+ + +D + +K+ DTAG+R+ Sbjct: 181 QIVVSGRPNAGKSTFINAIINDERLLTGPEAGITRESIEVDWQYKNTHIKLIDTAGLRKK 240 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 I +EK T ++ A+ ++L+ Sbjct: 241 STITASLEKLSTSDTINSIKFANTVILM 268 >gi|332280241|ref|ZP_08392654.1| YeeP protein [Shigella sp. D9] gi|332102593|gb|EGJ05939.1| YeeP protein [Shigella sp. D9] Length = 303 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 4/108 (3%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L +S HI + L ++ R+ I I+G S AGKSSL NAL + +V V+D+ TR+V Sbjct: 30 LPYSLSRHILE-HLRKLTRHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 88 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305 L G+ + I+D G+ E+ D E E + R L DL+L L Sbjct: 89 RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 134 >gi|157803303|ref|YP_001491852.1| GTP-binding protein Era [Rickettsia canadensis str. McKiel] gi|189037664|sp|A8EXI4|ERA_RICCK RecName: Full=GTPase Era gi|157784566|gb|ABV73067.1| GTP-binding protein Era [Rickettsia canadensis str. McKiel] Length = 295 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 52/90 (57%) Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 I+ + I+G N+GKS+L N + + ++IVT TTR ++T + L+ V + DT Sbjct: 5 IQKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTP 64 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLL 305 GI E +EK ++ + + +ADL++L+ Sbjct: 65 GIFEPKGTLEKAMVRCAWSSLHSADLVMLI 94 >gi|310815879|ref|YP_003963843.1| GTP-binding protein HflX [Ketogulonicigenium vulgare Y25] gi|308754614|gb|ADO42543.1| GTP-binding protein HflX [Ketogulonicigenium vulgare Y25] Length = 432 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 57/191 (29%), Positives = 85/191 (44%), Gaps = 30/191 (15%) Query: 220 YKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGI 277 Y IV L G++NAGKSSLFN + DV + D T D L L +G V +SDT G Sbjct: 203 YPIVALVGYTNAGKSSLFNRVTGADV-LAKDQLFATLDPTMRRLTLPDGQEVIMSDTVGF 261 Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSKK-------------EISFPKNIDFIF 324 + T EV ADLIL +++I+ + +I P++ + Sbjct: 262 ISDLPTQLVAAFRATLEEVLEADLILHVRDISHPQTAQQARDVMQILHQIGVPEDAPMLE 321 Query: 325 IGTKSDL--------YSTYTEEYDH--LISSFTGEGLEELINKIKSILSNKF----KKLP 370 + K DL + T D +S+ TGEG+E L+ +I + L+ F +LP Sbjct: 322 VLNKIDLLDEAGREAFQTEAARKDAKIAVSALTGEGVEALLEQISAALAPPFLIEDLRLP 381 Query: 371 FSIPSHKRHLY 381 + + LY Sbjct: 382 HTAGKLRAWLY 392 >gi|185178903|ref|ZP_02964672.1| ribosome-associated GTPase EngA [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|195867881|ref|ZP_03079880.1| ribosome-associated GTPase EngA [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|225551179|ref|ZP_03772125.1| GTP-binding protein EngA [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|184209162|gb|EDU06205.1| ribosome-associated GTPase EngA [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|195660458|gb|EDX53716.1| ribosome-associated GTPase EngA [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|225378994|gb|EEH01359.1| GTP-binding protein EngA [Ureaplasma urealyticum serovar 8 str. ATCC 27618] Length = 442 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/89 (38%), Positives = 45/89 (50%), Gaps = 3/89 (3%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 +K I+G N GKSSL N + + IV G+TRD + D I DTAG+R Sbjct: 175 FKFCIIGRPNVGKSSLTNTILGEQRMIVNAEAGSTRDSIDNDFSYHNKKYTIIDTAGVRR 234 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLL 305 I VEK + RT +E + LILL+ Sbjct: 235 KGKIVEAVEKYAVLRTQKAIERSQLILLV 263 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 6/87 (6%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK---ISDTAGIR 278 I I+G N GKSSLFN + + +IV D PG TRD + D+ +L + + DT GI Sbjct: 4 IAIVGKPNVGKSSLFNRILMRRKSIVDDQPGVTRDRI---YDVGNWLTRDFMLIDTGGII 60 Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL 305 ++D + ++ + A+ I+ L Sbjct: 61 SSEDTYQDNINEQVLFAINEANTIIFL 87 >gi|124088127|ref|XP_001346973.1| GTP-binding protein [Paramecium tetraurelia strain d4-2] gi|145474647|ref|XP_001423346.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|50057362|emb|CAH03346.1| GTP-binding protein, putative [Paramecium tetraurelia] gi|74831356|emb|CAI39288.1| rab_C76 [Paramecium tetraurelia] gi|124390406|emb|CAK55948.1| unnamed protein product [Paramecium tetraurelia] Length = 222 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 55/171 (32%), Positives = 80/171 (46%), Gaps = 53/171 (30%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT-TRDVLTIDLDLEG--------YLVKI 271 KI++LG+SNAGK+SL + TD T + + + IDL++E Y + I Sbjct: 8 KIILLGNSNAGKTSLI-------IKFKTDRFSTDSVNTIGIDLNMEKNVKINNQLYDIAI 60 Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILL---LKEINSKKEISF---------PKN 319 DTAG ++ IK ++A+ ++ L E NS + ++ P+N Sbjct: 61 WDTAG--------QEIYIKMVKFSAKDANTAMICFDLSESNSLENVATWIQLLREEGPQN 112 Query: 320 IDFIFIGTKSDLYSTYTEE--------------YDH---LISSFTGEGLEE 353 I I IGTK DL + YT+E YD L SS TGEGL+E Sbjct: 113 IQIIIIGTKKDLPTKYTQEQLQQVQNAWKANFNYDFPMLLTSSKTGEGLKE 163 >gi|15672737|ref|NP_266911.1| GTP-binding protein EngA [Lactococcus lactis subsp. lactis Il1403] gi|26006736|sp|Q9CHH6|DER_LACLA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|12723672|gb|AAK04853.1|AE006309_2 GTP-binding protein [Lactococcus lactis subsp. lactis Il1403] gi|326406306|gb|ADZ63377.1| GTP-binding protein [Lactococcus lactis subsp. lactis CV56] Length = 436 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/144 (30%), Positives = 71/144 (49%), Gaps = 31/144 (21%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRE 279 K ++G N GKSSL NA+ +D I + I GTTRD + T +D E + DTAG+R+ Sbjct: 176 KFSLIGRPNVGKSSLINAILGEDRVIASPIAGTTRDAIDTHFVDSEDQEFVMIDTAGMRK 235 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336 + I EK + R ++ +D++L++ IN+++ I Sbjct: 236 SGKIYENTEKYSVMRAMRAIDRSDIVLMV--INAEEGI---------------------- 271 Query: 337 EEYDHLISSF---TGEGLEELINK 357 EYD I+ F G+G+ ++NK Sbjct: 272 REYDMRIAGFAHEAGKGILIVVNK 295 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN +A + ++IV DIPG TRD + + I DT GI +D Sbjct: 6 VAIVGRPNVGKSTIFNRIAGERISIVEDIPGVTRDRIYATGEWLTRKFNIIDTGGIELSD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + E + + + AD+I+ + Sbjct: 66 EPFMTEIRAQAEIAMTEADVIIAV 89 >gi|87303080|ref|ZP_01085878.1| GTP-binding protein EngA [Synechococcus sp. WH 5701] gi|87282247|gb|EAQ74207.1| GTP-binding protein EngA [Synechococcus sp. WH 5701] Length = 455 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 36/88 (40%), Positives = 53/88 (60%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSL N++ + AIV+ I GTTRD + ++ EG K+ DTAGIR Sbjct: 178 QLAIIGRPNVGKSSLLNSICGEARAIVSPIRGTTRDTIDTTIEREGKTWKLLDTAGIRRR 237 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + E GI R+F VE +D+ +L+ Sbjct: 238 RSVSYGPEYFGINRSFKAVERSDVCVLV 265 Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 31/61 (50%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+L N L + AIV D PG TRD + ++ DT G+ D Sbjct: 6 VAIIGRPNVGKSTLVNRLCRSREAIVHDQPGVTRDRTYQEGFWGDRRFRVVDTGGLVFDD 65 Query: 282 D 282 D Sbjct: 66 D 66 >gi|325000201|ref|ZP_08121313.1| GTP-binding protein Der [Pseudonocardia sp. P1] Length = 441 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 59/98 (60%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ ++G N GKSSL N LA ++ ++V D+ GTT D + +DL+G + + DTAG+R+ Sbjct: 181 RVALVGKPNVGKSSLLNKLAGEERSVVHDVAGTTVDPVDSLVDLDGEVFRFVDTAGLRKR 240 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + +E RT +E A++ L+L I++ + I+ Sbjct: 241 VKMASGMEYYASLRTSSAIEAAEVALVL--IDASQPIA 276 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/158 (24%), Positives = 68/158 (43%), Gaps = 17/158 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+L N + + A+V D+PG TRD + D G K+ DT G Sbjct: 7 LAVVGRPNVGKSTLVNRMLGRREAVVQDVPGVTRDRVVYDGLWNGRRFKLMDTGGWEPDA 66 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSD--- 330 D ++ ++ + AD +LL+ + + + + + + TK D Sbjct: 67 DGLQGFVAQQAETAMRTADAVLLVVDASVGATATDQAAARVLRRAKVPVMLAATKVDDDR 126 Query: 331 LYSTYTEEY------DHLISSFTGEGLEELINKIKSIL 362 L S E + H +S G G +L++ I +L Sbjct: 127 LTSDTAELWRLGLGQPHPVSGLHGRGSGDLLDAILEVL 164 >gi|189218193|ref|YP_001938835.1| GTP-binding protein EngA [Methylacidiphilum infernorum V4] gi|189185051|gb|ACD82236.1| GTP-binding protein EngA [Methylacidiphilum infernorum V4] Length = 433 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/99 (31%), Positives = 55/99 (55%), Gaps = 5/99 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I ++G NAGKSSL N+L + +V + PGTT D + + +++ G DTAG+++ Sbjct: 149 RIAVIGQPNAGKSSLINSLIGESRLVVHEEPGTTHDAVEVGIEVCGVPFTFIDTAGLKKK 208 Query: 281 DDIVEKEGIK---RTFLEVENADLILLLKEINSKKEISF 316 + + E IK RT + + L+ + I+ +K I+ Sbjct: 209 NKLQEGLEIKVSGRTVHSINRSHLVWFI--IDGQKGITL 245 >gi|284921995|emb|CBG35073.1| putative GTP-binding protein [Escherichia coli 042] Length = 303 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 4/108 (3%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L +S HI + L ++ R+ I I+G S AGKSSL NAL + +V V+D+ TR+V Sbjct: 30 LPYSLSRHILE-HLRKLTRHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 88 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305 L G+ + I+D G+ E+ D E E + R L DL+L L Sbjct: 89 RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 134 >gi|157826088|ref|YP_001493808.1| GTP-binding protein EngA [Rickettsia akari str. Hartford] gi|166225849|sp|A8GPH5|DER_RICAH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|157800046|gb|ABV75300.1| GTP-binding protein EngA [Rickettsia akari str. Hartford] Length = 447 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L+ + AIV D+PG TRD D + + + DT G+ E Sbjct: 6 IALVGRPNVGKSTLFNRLSIRKKAIVHDLPGITRDRKYTDGKIGSFEFLLIDTPGLEENH 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 D + +++T + ADLI + Sbjct: 66 DSMGARLMEQTTKAILEADLICFM 89 Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 1/75 (1%) Query: 212 LGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270 + + I+ Y +IV+ G NAGKS+ NAL + + G TR+ + ID + +K Sbjct: 171 IADPIKGDYLQIVVSGRPNAGKSTFINALINDERLLTGPEAGITRESIEIDWHYKNNHIK 230 Query: 271 ISDTAGIRETDDIVE 285 + DTAG+R+ I E Sbjct: 231 LIDTAGLRKKSTITE 245 >gi|188518230|ref|ZP_03003765.1| ribosome-associated GTPase EngA [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|188998276|gb|EDU67373.1| ribosome-associated GTPase EngA [Ureaplasma urealyticum serovar 11 str. ATCC 33695] Length = 442 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/89 (38%), Positives = 45/89 (50%), Gaps = 3/89 (3%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 +K I+G N GKSSL N + + IV G+TRD + D I DTAG+R Sbjct: 175 FKFCIIGRPNVGKSSLTNTILGEQRMIVNAEAGSTRDSIDNDFSYHNKKYTIIDTAGVRR 234 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLL 305 I VEK + RT +E + LILL+ Sbjct: 235 KGKIVEAVEKYAVLRTQKAIERSQLILLV 263 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 6/87 (6%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK---ISDTAGIR 278 I I+G N GKSSLFN + + +IV D PG TRD + D+ +L + + DT GI Sbjct: 4 IAIVGKPNVGKSSLFNRILMRRKSIVDDQPGVTRDRI---YDVGNWLTRDFMLIDTGGII 60 Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL 305 ++D + ++ + A+ I+ L Sbjct: 61 SSEDTYQDNINEQVLFAINEANTIIFL 87 >gi|126732584|ref|ZP_01748381.1| GTP-binding protein EngA [Sagittula stellata E-37] gi|126706868|gb|EBA05937.1| GTP-binding protein EngA [Sagittula stellata E-37] Length = 488 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 1/87 (1%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 + + I+G N GKS+LFN L K +A+V D PG TRD+ + L + DTAG+ Sbjct: 3 FSLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGEAKLGDLRFTVIDTAGLEN 62 Query: 280 TDDIVEKEGIKR-TFLEVENADLILLL 305 +D ++R T V+ AD+ L L Sbjct: 63 ANDDSLPARMRRLTERAVDMADVCLFL 89 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 74/165 (44%), Gaps = 33/165 (20%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I ++G NAGKS+L N + +D + G TRD +++ + G ++I DTAG+R Sbjct: 201 QIAVVGRPNAGKSTLINHIIGEDRLLTGPEAGITRDAISLTHEWGGVPMRIFDTAGMRRR 260 Query: 281 DDIVEK-------EGIKRT-FLEV-----------ENADL-ILLLKEINSKKEISFPKNI 320 + EK +GI+ F EV E DL I L E + + Sbjct: 261 SKVQEKLEKLSVSDGIRAVKFAEVVVVLLDAAIPFETQDLKIADLAEREGRAVVVAVNKW 320 Query: 321 DFIFIGTKSDLYSTYTEEYDHL-----------ISSFTGEGLEEL 354 D G K + E+++H+ +S+ TG+GL++L Sbjct: 321 D--IEGEKQEKLKWLREQFEHVLPQLRGAPLVTVSARTGKGLDKL 363 >gi|300927013|ref|ZP_07142769.1| hypothetical protein HMPREF9548_05002 [Escherichia coli MS 182-1] gi|300416990|gb|EFK00301.1| hypothetical protein HMPREF9548_05002 [Escherichia coli MS 182-1] Length = 309 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 4/108 (3%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L +S HI + L ++ R+ I I+G S AGKSSL NAL + +V V+D+ TR+V Sbjct: 36 LPYSLSRHILE-HLRKLTRHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 94 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305 L G+ + I+D G+ E+ D E E + R L DL+L L Sbjct: 95 RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 140 >gi|281491251|ref|YP_003353231.1| GTP-binding protein [Lactococcus lactis subsp. lactis KF147] gi|281374992|gb|ADA64510.1| GTP-binding protein [Lactococcus lactis subsp. lactis KF147] Length = 436 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/144 (30%), Positives = 71/144 (49%), Gaps = 31/144 (21%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRE 279 K ++G N GKSSL NA+ +D I + I GTTRD + T +D E + DTAG+R+ Sbjct: 176 KFSLIGRPNVGKSSLINAILGEDRVIASPIAGTTRDAIDTHFVDSEDQEFVMIDTAGMRK 235 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336 + I EK + R ++ +D++L++ IN+++ I Sbjct: 236 SGKIYENTEKYSVMRAMRAIDRSDIVLMV--INAEEGI---------------------- 271 Query: 337 EEYDHLISSF---TGEGLEELINK 357 EYD I+ F G+G+ ++NK Sbjct: 272 REYDMRIAGFAHEAGKGILIVVNK 295 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN +A + ++IV DIPG TRD + + I DT GI +D Sbjct: 6 VAIVGRPNVGKSTIFNRIAGERISIVEDIPGVTRDRIYATGEWLTRKFNIIDTGGIELSD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + E + + + AD+I+ + Sbjct: 66 EPFMTEIRAQAEIAMTEADVIITV 89 >gi|39938726|ref|NP_950492.1| GTP-binding protein EngA [Onion yellows phytoplasma OY-M] gi|39721835|dbj|BAD04325.1| conserved hypothetical protein [Onion yellows phytoplasma OY-M] Length = 478 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 3/91 (3%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 N K ++G N GKS+L N+L IV+D+ GTT D + + +G +I DTAGI Sbjct: 213 NIIKFCVVGRPNVGKSTLTNSLLASQRMIVSDMAGTTTDAVDTFFENDGQKYQIIDTAGI 272 Query: 278 RETDDIVEKE---GIKRTFLEVENADLILLL 305 ++ I E+E + R +E AD+ L+ Sbjct: 273 KKRGKIYEQEDKYSVLRALGALEKADIACLV 303 Score = 40.8 bits (94), Expect = 0.40, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 2/87 (2%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 +KI I+G N GKSSLFN + + AI G TRD + + + DT GI E Sbjct: 3 FKIAIVGRPNVGKSSLFNRIIGRRHAITHQKAGITRDRIYATAEWFTKTFGVIDTGGI-E 61 Query: 280 TDDIVEKEGIK-RTFLEVENADLILLL 305 E IK + L V+ AD+I+ + Sbjct: 62 IQSTPFLEQIKLQAQLAVDEADVIVFV 88 >gi|111017940|ref|YP_700912.1| GTP-binding protein EngA [Rhodococcus jostii RHA1] gi|110817470|gb|ABG92754.1| GTP-binding protein [Rhodococcus jostii RHA1] Length = 475 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+L N + + A+V DIPG TRD ++ + + G + DT G Sbjct: 41 LAVVGRPNVGKSTLVNRIIGRREAVVEDIPGVTRDRVSYEANWSGRRFMVQDTGGWEPDA 100 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 +++ ++ L ++ AD ILL+ Sbjct: 101 KGLQQSVARQAELAMQTADAILLV 124 Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust. Identities = 31/100 (31%), Positives = 56/100 (56%), Gaps = 9/100 (9%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ ++G N GKSSL N L+ + ++V ++ GTT D + ++L G + DTAG+R+ Sbjct: 213 RVALVGKPNVGKSSLLNKLSGDERSVVHNVAGTTVDPVDSIVELGGRPWRFVDTAGLRKR 272 Query: 281 DDIVEKEGIK-----RTFLEVENADLILLLKEINSKKEIS 315 + G + RT +E A++ +LL I++ + IS Sbjct: 273 --VSHASGAEFYASLRTKSAIEAAEVAILL--IDASEPIS 308 >gi|306812029|ref|ZP_07446235.1| hypothetical protein ECNC101_08969 [Escherichia coli NC101] gi|305854533|gb|EFM54970.1| hypothetical protein ECNC101_08969 [Escherichia coli NC101] Length = 290 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 4/108 (3%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L +S HI + L ++ R+ I I+G S AGKSSL NAL + +V V+D+ TR+V Sbjct: 17 LPYSLSRHILE-HLRKLTRHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 75 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305 L G+ + I+D G+ E+ D E E + R L DL+L L Sbjct: 76 RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 121 >gi|317374946|sp|B3DXK2|DER_METI4 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA Length = 460 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/99 (31%), Positives = 55/99 (55%), Gaps = 5/99 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I ++G NAGKSSL N+L + +V + PGTT D + + +++ G DTAG+++ Sbjct: 176 RIAVIGQPNAGKSSLINSLIGESRLVVHEEPGTTHDAVEVGIEVCGVPFTFIDTAGLKKK 235 Query: 281 DDIVEKEGIK---RTFLEVENADLILLLKEINSKKEISF 316 + + E IK RT + + L+ + I+ +K I+ Sbjct: 236 NKLQEGLEIKVSGRTVHSINRSHLVWFI--IDGQKGITL 272 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 34/56 (60%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 I I+G N GKS LFN L K++++V D PG TRD + + EG + + DT G+ Sbjct: 4 IAIVGRPNVGKSLLFNRLCGKEISLVYDQPGVTRDRIVCCIKKEGKEIVLVDTGGL 59 >gi|331668216|ref|ZP_08369068.1| conserved hypothetical protein [Escherichia coli TA271] gi|331064730|gb|EGI36637.1| conserved hypothetical protein [Escherichia coli TA271] Length = 290 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 4/108 (3%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L +S HI + L ++ R+ I I+G S AGKSSL NAL + +V V+D+ TR+V Sbjct: 17 LPYSLSRHILE-HLRKLTRHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 75 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305 L G+ + I+D G+ E+ D E E + R L DL+L L Sbjct: 76 RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 121 >gi|297198669|ref|ZP_06916066.1| ribosome-associated GTPase EngA [Streptomyces sviceus ATCC 29083] gi|297147167|gb|EDY58617.2| ribosome-associated GTPase EngA [Streptomyces sviceus ATCC 29083] Length = 492 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 41/71 (57%) Query: 209 QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL 268 Q G I +I ++G N GKSSL N +A ++ +V ++ GTTRD + ++L G Sbjct: 218 QQTFGTAIGGPRRIALIGRPNVGKSSLLNKVAGEERVVVNEMAGTTRDPVDELIELGGVT 277 Query: 269 VKISDTAGIRE 279 K DTAGIR+ Sbjct: 278 WKFVDTAGIRK 288 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/84 (28%), Positives = 43/84 (51%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+L N + + A+V D PG TRD +T + + G K+ DT G + Sbjct: 56 LAVVGRPNVGKSTLVNRIIGRREAVVEDKPGVTRDRVTYEAEWAGRRFKVVDTGGWEQDV 115 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + +E AD ++ + Sbjct: 116 LGIDASVAAQAEYAIEAADAVVFV 139 >gi|256019137|ref|ZP_05433002.1| hypothetical protein ShiD9_09494 [Shigella sp. D9] Length = 290 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 4/108 (3%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L +S HI + L ++ R+ I I+G S AGKSSL NAL + +V V+D+ TR+V Sbjct: 17 LPYSLSRHILE-HLRKLTRHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 75 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305 L G+ + I+D G+ E+ D E E + R L DL+L L Sbjct: 76 RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 121 >gi|309797253|ref|ZP_07691648.1| conserved hypothetical protein [Escherichia coli MS 145-7] gi|308119128|gb|EFO56390.1| conserved hypothetical protein [Escherichia coli MS 145-7] gi|315252264|gb|EFU32232.1| putative GTP-binding protein [Escherichia coli MS 85-1] Length = 290 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 4/108 (3%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L +S HI + L ++ R+ I I+G S AGKSSL NAL + +V V+D+ TR+V Sbjct: 17 LPYSLSRHILE-HLRKLTRHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 75 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305 L G+ + I+D G+ E+ D E E + R L DL+L L Sbjct: 76 RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 121 >gi|254294311|ref|YP_003060334.1| GTP-binding protein EngA [Hirschia baltica ATCC 49814] gi|254042842|gb|ACT59637.1| small GTP-binding protein [Hirschia baltica ATCC 49814] Length = 483 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 64/122 (52%), Gaps = 11/122 (9%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K ++G NAGKS+L N+L + D + G TRD +T+ + EG +++ DTAG+R+ Sbjct: 202 KFTVVGRPNAGKSTLLNSLLQSDRLLTGPEAGITRDSVTVAWEYEGREMRLVDTAGLRKK 261 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL---KEINSKKEISFPKNI-----DFIFIGTKS 329 + +EK T ++ AD++ ++ ++ K+++ + +F+ TK Sbjct: 262 AKVQERLEKMSTGETIHSIKYADVVAIVMDSRDAFEKQDLQIADLVLREGRGVVFVCTKW 321 Query: 330 DL 331 DL Sbjct: 322 DL 323 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 1/86 (1%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+LFN L K +A+V D PG TRD L + + DTAG + Sbjct: 4 KVAIVGRPNVGKSTLFNRLVGKKIALVDDQPGVTRDRKEARGRLGDLELDLIDTAGFDDV 63 Query: 281 DDI-VEKEGIKRTFLEVENADLILLL 305 +D +E ++T + + AD+ L + Sbjct: 64 NDASLEARMRRQTEMAIAEADVSLYV 89 >gi|26369239|dbj|BAC25298.1| unnamed protein product [Mus musculus] Length = 157 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/101 (33%), Positives = 49/101 (48%), Gaps = 5/101 (4%) Query: 342 LISSFTGEGLEELINKIKSILSNKFKKLPFSIP--SHKRHLYHLSQTVRYLEMASLNEKD 399 L+S TG G++ L+ +K+ L+ P + RH YHL + L L Sbjct: 60 LLSCHTGAGMDSLLQALKTELAAVCGDPSTGPPLLTRVRHQYHLQGCLDALGHYQLATD- 118 Query: 400 CGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 L + AE LR A L +TG E++LD+IF FC+GK Sbjct: 119 --LALAAEALRQARRQLNHLTGGGGTEEILDLIFQDFCVGK 157 >gi|39996482|ref|NP_952433.1| ferrous iron transport protein B [Geobacter sulfurreducens PCA] gi|39983362|gb|AAR34756.1| ferrous iron transport protein B [Geobacter sulfurreducens PCA] Length = 663 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/83 (38%), Positives = 46/83 (55%), Gaps = 1/83 (1%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ ++G+ N GKS LFNAL VA V++ PGT+ +V EG +I DT G+ Sbjct: 23 KVALVGNPNVGKSVLFNALTGAYVA-VSNYPGTSVEVSRGSASFEGGSWEIIDTPGMYSI 81 Query: 281 DDIVEKEGIKRTFLEVENADLIL 303 I E+E + R L E D++L Sbjct: 82 LPITEEERVAREILLTERPDVVL 104 >gi|226360071|ref|YP_002777849.1| GTP-binding protein EngA [Rhodococcus opacus B4] gi|226238556|dbj|BAH48904.1| GTP-binding protein EngA [Rhodococcus opacus B4] Length = 475 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+L N + + A+V DIPG TRD ++ + + G + DT G Sbjct: 41 LAVVGRPNVGKSTLVNRIIGRREAVVEDIPGVTRDRVSYEANWSGRRFMVQDTGGWEPDA 100 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 +++ ++ L ++ AD ILL+ Sbjct: 101 KGLQQSVARQAELAMQTADAILLV 124 Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust. Identities = 31/100 (31%), Positives = 56/100 (56%), Gaps = 9/100 (9%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ ++G N GKSSL N L+ + ++V ++ GTT D + ++L G + DTAG+R+ Sbjct: 213 RVALVGKPNVGKSSLLNKLSGDERSVVHNVAGTTVDPVDSIVELGGRPWRFVDTAGLRKR 272 Query: 281 DDIVEKEGIK-----RTFLEVENADLILLLKEINSKKEIS 315 + G + RT +E A++ +LL I++ + IS Sbjct: 273 --VSHASGAEFYASLRTKSAIEAAEVAILL--IDASEPIS 308 >gi|241896284|ref|ZP_04783580.1| GTP-binding protein EngA [Weissella paramesenteroides ATCC 33313] gi|241870525|gb|EER74276.1| GTP-binding protein EngA [Weissella paramesenteroides ATCC 33313] Length = 436 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/160 (25%), Positives = 79/160 (49%), Gaps = 22/160 (13%) Query: 219 GYKIV-ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 G+ +V ++G N GKS++FN +A ++IV D PG TRD + + + ++ DT GI Sbjct: 2 GFPVVAVVGRPNVGKSTIFNRIAGDRISIVEDTPGVTRDRIYTRAEWLTHEFRLIDTGGI 61 Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKE----------------INSKKEISFPKN-I 320 D+ + +++ + ++ AD+I+ + SKK + N + Sbjct: 62 DMGDEPFMSQIVQQAEIAIDEADVIVFMVSAREGLTEADERVAKILYRSKKPVVLAVNKV 121 Query: 321 DFIFIGTKSDLYSTYTEEY--DHLISSFTGEGLEELINKI 358 D I + +S++Y Y + + IS G GL +L++++ Sbjct: 122 DNIEL--RSEIYEFYALGFGDPYPISGAHGTGLGDLLDQV 159 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 4/85 (4%) Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRETDDI 283 +G N GKSSL NA+ ++ IV+DI GTTRD + T G + DTAGIR+ + Sbjct: 180 IGRPNVGKSSLVNAILGEERVIVSDISGTTRDAIDTRFTSAYGDEFVMVDTAGIRKRGKV 239 Query: 284 ---VEKEGIKRTFLEVENADLILLL 305 EK + R +++++++L++ Sbjct: 240 YESTEKYSVMRAMRAIDDSNVVLVV 264 >gi|218290942|ref|ZP_03494999.1| small GTP-binding protein [Alicyclobacillus acidocaldarius LAA1] gi|218239107|gb|EED06310.1| small GTP-binding protein [Alicyclobacillus acidocaldarius LAA1] Length = 442 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 3/86 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G +N GKS+LFN L + V+IV D PG TRD + + G ++ DT GI E D Sbjct: 6 VAIVGRANVGKSTLFNRLVGRRVSIVEDTPGVTRDRIYGKSEWNGVPFRVIDTGGI-EMD 64 Query: 282 DIVEKEGIKRTFLE--VENADLILLL 305 + E + R + ++ AD+IL + Sbjct: 65 EEDEIGNLIRVQAQIAIDEADVILFV 90 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 3/91 (3%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 + +I +G N GKSSL N L ++ +V+ + GTTRD + L+ +G + DTAG+ Sbjct: 175 DAIRIAFIGRPNVGKSSLVNRLLGEERVMVSPVAGTTRDAVDTPLERDGQSYVLVDTAGM 234 Query: 278 RETDDI---VEKEGIKRTFLEVENADLILLL 305 R + +EK + R ++ AD+ ++ Sbjct: 235 RRKGKVYERIEKYSVLRALRALDRADVAFVV 265 >gi|189183414|ref|YP_001937199.1| GTP-binding protein EngA [Orientia tsutsugamushi str. Ikeda] gi|238692236|sp|B3CR58|DER_ORITI RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|189180185|dbj|BAG39965.1| GTP-binding protein, Era/Obg family [Orientia tsutsugamushi str. Ikeda] Length = 454 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/92 (28%), Positives = 52/92 (56%), Gaps = 3/92 (3%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R ++ I+G N GKS+ NA+ +D + G TR+ + ID + G+L+++ DTAG Sbjct: 185 RPELELAIVGRPNCGKSTFINAILNEDRVLTGPQSGLTRNSVEIDWEYYGHLIRLVDTAG 244 Query: 277 IRETDDIV---EKEGIKRTFLEVENADLILLL 305 +R+ + + E + TF + A++++++ Sbjct: 245 VRKKNAVTQSCELLSVNDTFKTIRFANIVVVM 276 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 52/198 (26%), Positives = 93/198 (46%), Gaps = 22/198 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + ++G N GKS+LFN L+ ++ +IV D+PG TRD +L L+ + DT G+ Sbjct: 6 VALVGKPNVGKSTLFNRLSLREKSIVHDLPGITRDRKYAKANLFSDLI-VVDTPGLEFAA 64 Query: 281 DDIVEKEGIKRTFLEVENADL----------ILLLKEINSKKEISFPKNIDFIFIGTKSD 330 +E ++++ + + A + IL + E + K I + K++ Sbjct: 65 AGSLEFNMMQQSLVAINEAHIICFVVDAITGILPIDEECANLIRKHNKQSSTILVINKTE 124 Query: 331 LYSTYTEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL 383 + Y L IS+ G+G+ EL + I++ILS KK+ F ++ + Y+ Sbjct: 125 KPIILDKSYYKLGFSESVCISAKHGQGIYELGDIIQNILSED-KKINFLTTTNTKCEYN- 182 Query: 384 SQTVRYLEMASLNEKDCG 401 Q LE+A + +CG Sbjct: 183 -QQRPELELAIVGRPNCG 199 >gi|188024473|ref|ZP_02997121.1| ribosome-associated GTPase EngA [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|209554037|ref|YP_002284819.1| GTP-binding protein EngA [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|238058980|sp|B5ZBM9|DER_UREU1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|188018583|gb|EDU56623.1| ribosome-associated GTPase EngA [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|209541538|gb|ACI59767.1| ribosome-associated GTPase EngA [Ureaplasma urealyticum serovar 10 str. ATCC 33699] Length = 442 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/89 (38%), Positives = 45/89 (50%), Gaps = 3/89 (3%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 +K I+G N GKSSL N + + IV G+TRD + D I DTAG+R Sbjct: 175 FKFCIIGRPNVGKSSLTNTILGEQRMIVNAEAGSTRDSIDNDFSYHNKKYTIIDTAGVRR 234 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLL 305 I VEK + RT +E + LILL+ Sbjct: 235 KGKIVEAVEKYAVLRTQKAIERSQLILLV 263 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 6/87 (6%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK---ISDTAGIR 278 I I+G N GKSSLFN + + +IV D PG TRD + D+ +L + + DT GI Sbjct: 4 IAIVGKPNVGKSSLFNRILMRRKSIVDDQPGVTRDRI---YDVGNWLTRDFMLIDTGGII 60 Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL 305 ++D + ++ + A+ I+ L Sbjct: 61 SSEDTYQDNINEQVLFAINEANTIIFL 87 >gi|194334612|ref|YP_002016472.1| GTP-binding protein EngA [Prosthecochloris aestuarii DSM 271] gi|238693304|sp|B4S433|DER_PROA2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|194312430|gb|ACF46825.1| small GTP-binding protein [Prosthecochloris aestuarii DSM 271] Length = 436 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 46/89 (51%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN + + AIV PG TRD + + G + DT G Sbjct: 5 VALVGRPNVGKSTLFNRITHQKSAIVDSTPGVTRDRHIMPAEWIGKEFLVMDTGGYCHDS 64 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310 D + K +++T + AD+I+ L ++ S Sbjct: 65 DGISKAMLEQTLTAIGEADVIIFLVDVRS 93 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSS NAL + IV++ PGTTRD + G + + DTAG+R+ Sbjct: 178 RLAIIGRPNVGKSSFVNALLGTNRNIVSNKPGTTRDAIDTRFKRNGREIVLIDTAGLRKR 237 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 I +E RT +E D+ L+L Sbjct: 238 ARIDAGIEFYSSLRTERAIERCDVALVL 265 >gi|224368191|ref|YP_002602354.1| Era [Desulfobacterium autotrophicum HRM2] gi|223690907|gb|ACN14190.1| Era [Desulfobacterium autotrophicum HRM2] Length = 300 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 50/90 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G NAGKS+L N + + ++I + P TTRD + ++ G + DT GI Sbjct: 16 IAIVGAPNAGKSTLLNTVLGQKISITSKKPQTTRDRILGVVERPGAQIIFVDTPGIHRAH 75 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK 311 ++ K+ + + V++ D +LL+ ++ SK Sbjct: 76 SLLNKKIVDQALSAVDDVDAVLLMIDVTSK 105 >gi|139474375|ref|YP_001129091.1| GTP-binding protein EngA [Streptococcus pyogenes str. Manfredo] gi|166225865|sp|A2RGB0|DER_STRPG RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|134272622|emb|CAM30889.1| GTP-binding protein EngA [Streptococcus pyogenes str. Manfredo] Length = 436 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 70/145 (48%), Gaps = 31/145 (21%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRETDD 282 ++G N GKSSL NA+ +D I + + GTTRD + D +G + DTAG+R++ Sbjct: 179 LIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDADGQEFTMIDTAGMRKSGK 238 Query: 283 I---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY 339 I EK + R ++ + ++L++ IN+++ I EY Sbjct: 239 IYENTEKYSVMRAMRAIDRSGVVLMV--INAEEGI----------------------REY 274 Query: 340 DHLISSF---TGEGLEELINKIKSI 361 D I+ F G+G+ ++NK +I Sbjct: 275 DKRIAGFAHEAGKGMIIVVNKWDTI 299 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN +A + ++IV DI G TRD + + + DT GI + D Sbjct: 6 VAIVGRPNVGKSTLFNRIAGERISIVEDIEGVTRDRIYATGEWLNRQFSLIDTGGIDDVD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + + +E AD+I+ + Sbjct: 66 APFMEQIKHQAQIAMEEADVIVFV 89 >gi|255011303|ref|ZP_05283429.1| putative GTPase [Bacteroides fragilis 3_1_12] gi|313149114|ref|ZP_07811307.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313137881|gb|EFR55241.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 394 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 52/168 (30%), Positives = 83/168 (49%), Gaps = 17/168 (10%) Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI-SDT 274 + N I + G N+GKSSL NAL ++ A+V++I GTT D + +++ G + DT Sbjct: 6 LSNRLHIALFGKRNSGKSSLINALTNQNAALVSNIAGTTTDPVYQPMEIHGIGPCVFIDT 65 Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLL---KEINSKK---EISFPKNIDFIFIGTK 328 AG + ++ I+RT V+ D+ L++ E++ +K E+ K I ++ I K Sbjct: 66 AGFDDNGELGSLR-IERTVQAVDKTDIALMVCCDTELSEEKRWIELLKEKGIPYLLILNK 124 Query: 329 SDLYSTYTEEYDHLISSFTGEGLEELINKIK------SILSNKFKKLP 370 +DL E + L TGE LI K SI + +KLP Sbjct: 125 ADLSENPKETANEL-ERQTGE--RPLIVSAKEKTGMDSICRSILQKLP 169 >gi|269791764|ref|YP_003316668.1| small GTP-binding protein [Thermanaerovibrio acidaminovorans DSM 6589] gi|269099399|gb|ACZ18386.1| small GTP-binding protein [Thermanaerovibrio acidaminovorans DSM 6589] Length = 398 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 52/168 (30%), Positives = 82/168 (48%), Gaps = 21/168 (12%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDTA 275 N I I G NAGKSSL NAL +D A+V+ PGTT D + ++L G +V I DTA Sbjct: 7 NRLHIAIFGRRNAGKSSLINALTGQDAALVSSEPGTTTDPVMKAMELLPIGPVVFI-DTA 65 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLL---------KEINSKKEISFPKNIDFIFIG 326 GI + ++ + ++RT ++ DL LL+ E E+ + I + + Sbjct: 66 GIDDQGELGQLR-VERTRRVLDRTDLALLVVSPPVTDLSMEEGWLAELRG-RGIPVVGVF 123 Query: 327 TKSD---LYSTYTEEYDHL----ISSFTGEGLEELINKIKSILSNKFK 367 KSD L + L +S+ TG+G++EL I+ + ++ Sbjct: 124 NKSDQGELPVQWVSGRLGLRLTPVSALTGDGIQELKAAIQEAVPEGWE 171 >gi|238855193|ref|ZP_04645512.1| ribosome-associated GTPase EngA [Lactobacillus jensenii 269-3] gi|260664556|ref|ZP_05865408.1| ribosome-associated GTPase EngA [Lactobacillus jensenii SJ-7A-US] gi|282932513|ref|ZP_06337938.1| ribosome-associated GTPase EngA [Lactobacillus jensenii 208-1] gi|313471978|ref|ZP_07812470.1| ribosome-associated GTPase EngA [Lactobacillus jensenii 1153] gi|238832085|gb|EEQ24403.1| ribosome-associated GTPase EngA [Lactobacillus jensenii 269-3] gi|239529090|gb|EEQ68091.1| ribosome-associated GTPase EngA [Lactobacillus jensenii 1153] gi|260561621|gb|EEX27593.1| ribosome-associated GTPase EngA [Lactobacillus jensenii SJ-7A-US] gi|281303462|gb|EFA95639.1| ribosome-associated GTPase EngA [Lactobacillus jensenii 208-1] Length = 436 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 46/87 (52%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN + + +AIV D PG TRD G+ I DT GI Sbjct: 6 VAIVGQPNVGKSTLFNRIINERLAIVEDRPGVTRDRNYAKASWLGHEFNIIDTGGITWEG 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI 308 +E E + + +E AD+I+++ + Sbjct: 66 GRIEDEIRAQADIAMEEADVIVMITSV 92 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 46/180 (25%), Positives = 82/180 (45%), Gaps = 30/180 (16%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDD 282 ++G N GKSS+ NA+ + IV + GTTRD + E G ++ DTAGIR Sbjct: 179 VIGRPNVGKSSIINAMLGQKRVIVANEEGTTRDAVDTPFVAEDGTKFRMIDTAGIRRRGK 238 Query: 283 I---VEKEGIKRTFLEVENADLILLLKEINS------KKEISFPKNI--DFIFIGTKSDL 331 + EK + R ++ +D++ L+ + ++ K F + + + K DL Sbjct: 239 VYEKTEKYSVLRAQAAIQRSDVVCLVLDASTGIREQDKHVAGFAHDAGRGMLIVVNKWDL 298 Query: 332 -----------YSTYTEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLPFSI 373 EE+ +L +S+ TG+ LE+L + IK + N+ +++ S+ Sbjct: 299 PKKDSNSAKDFTRVIREEFQYLDYAPIVFVSAKTGKNLEQLPDLIKEVAENQSQRIQSSV 358 >gi|261337755|ref|ZP_05965639.1| ribosome-associated GTPase EngA [Bifidobacterium gallicum DSM 20093] gi|270277209|gb|EFA23063.1| ribosome-associated GTPase EngA [Bifidobacterium gallicum DSM 20093] Length = 709 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 45/84 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+L N + + A+V D PG TRD ++ D + G K+ DT G Sbjct: 275 LAVVGRPNVGKSTLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADV 334 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + +E + + VE AD ++L+ Sbjct: 335 EGIESAIASQAQIAVELADAVILV 358 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 7/90 (7%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGIR 278 ++ ++G N GKSSL N L+ + A+V D+ GTTRD + +D+D + YL DTAGI+ Sbjct: 449 RVALVGRPNVGKSSLLNQLSHSERAVVNDLAGTTRDPVDEIVDIDGQDYL--FIDTAGIK 506 Query: 279 ETDDIV---EKEGIKRTFLEVENADLILLL 305 + E RT +E ++L L+L Sbjct: 507 RRQHKLSGAEYYSSLRTQAAIERSELALVL 536 >gi|223558111|gb|ACM91114.1| putative GTPase [uncultured bacterium Rlip2] Length = 171 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/100 (36%), Positives = 54/100 (54%), Gaps = 6/100 (6%) Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266 ++Q GE + G + G NAGKSSL NAL + A+V+D+ GTT D + ++L G Sbjct: 1 MNQAARGERVHIG----VFGRRNAGKSSLLNALTGQQAALVSDVAGTTTDPVYQPMELHG 56 Query: 267 Y-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 V DTAG +T ++ ++RT AD+ L+L Sbjct: 57 AGAVVFIDTAGFDDT-GMLGGMRVERTRSAAARADIALVL 95 >gi|197294798|ref|YP_001799339.1| GTP-binding protein EngA [Candidatus Phytoplasma australiense] gi|171854125|emb|CAM12114.1| GTP-binding protein [Candidatus Phytoplasma australiense] Length = 439 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/91 (36%), Positives = 47/91 (51%), Gaps = 3/91 (3%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 N K I+G N GKS+L N+L +V+DI GTT D + EG +I DTAGI Sbjct: 177 NVIKFCIIGRPNVGKSTLTNSLLFSQRMVVSDIAGTTTDAIDTFFINEGQKYQIIDTAGI 236 Query: 278 RETDDIVEKE---GIKRTFLEVENADLILLL 305 ++ I E+E + R + N D+ L+ Sbjct: 237 KKRGKIYEQEDKYSVLRALQTLANCDIACLV 267 Score = 43.1 bits (100), Expect = 0.089, Method: Compositional matrix adjust. Identities = 33/86 (38%), Positives = 43/86 (50%), Gaps = 2/86 (2%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI I+G N GKSSLFN L K AI G TRD + + + DT GI E Sbjct: 3 KIAIVGRPNVGKSSLFNRLIGKRQAITHHKEGITRDRIYAQANWLTRTFDVIDTGGI-EF 61 Query: 281 DDIVEKEGIKRTF-LEVENADLILLL 305 I E IK+ L ++ AD+I+ + Sbjct: 62 QAIPFLEQIKQQAQLAIDEADVIIFV 87 >gi|162456368|ref|YP_001618735.1| ferrous iron transport protein B [Sorangium cellulosum 'So ce 56'] gi|161166950|emb|CAN98255.1| ferrous iron transport protein B [Sorangium cellulosum 'So ce 56'] Length = 653 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/78 (42%), Positives = 45/78 (57%), Gaps = 5/78 (6%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK-ISDTAGIRET 280 I +LG N+GKSSLFN L A V + PG T D+LT D+ L G V I+D G+ Sbjct: 20 IALLGRPNSGKSSLFNRLTGGS-AHVGNFPGITVDILTADVRLAGGAVATIADLPGLYSI 78 Query: 281 DDIVEK---EGIKRTFLE 295 + +V+ EG+ R FL+ Sbjct: 79 EAVVDPATDEGVARRFLD 96 >gi|15889576|ref|NP_355257.1| GTP-binding protein EngA [Agrobacterium tumefaciens str. C58] gi|26006719|sp|Q8UD28|DER_AGRT5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|15157462|gb|AAK88042.1| GTP-binding protein [Agrobacterium tumefaciens str. C58] Length = 476 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 1/87 (1%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 + + I+G N GKS+LFN L K +A+V D PG TRD D L I DTAG+ + Sbjct: 3 FTVAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGDAKLIDLRFTIIDTAGLEQ 62 Query: 280 T-DDIVEKEGIKRTFLEVENADLILLL 305 + + ++ +T ++ AD+ L + Sbjct: 63 SGPETLQGRMWAQTEAAIDEADVTLFV 89 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 38/66 (57%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G NAGKS+L N +D + G TRD ++++ D G +K+ DTAG+R Sbjct: 206 RVAIIGRPNAGKSTLINRFLGEDRLLTGPEAGITRDSISVEWDWRGRTIKMFDTAGMRRK 265 Query: 281 DDIVEK 286 + EK Sbjct: 266 AKVTEK 271 >gi|332297312|ref|YP_004439234.1| small GTP-binding protein [Treponema brennaborense DSM 12168] gi|332180415|gb|AEE16103.1| small GTP-binding protein [Treponema brennaborense DSM 12168] Length = 465 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 2/85 (2%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDD 282 I G N+GKS+L NA+ ++ A+ + + GTT D + ++L G V DTAG +T + Sbjct: 16 IFGRMNSGKSTLLNAITGQNAALTSPVKGTTTDPVYKPMELHGVGPVVFIDTAGFDDTGE 75 Query: 283 IVEKEGIKRTFLEVENADLILLLKE 307 + EK I +T L E D+ LL+ E Sbjct: 76 LGEKR-IAQTLLAAEKTDVALLVWE 99 >gi|257439162|ref|ZP_05614917.1| ribosome-associated GTPase EngA [Faecalibacterium prausnitzii A2-165] gi|257198413|gb|EEU96697.1| ribosome-associated GTPase EngA [Faecalibacterium prausnitzii A2-165] Length = 447 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/160 (26%), Positives = 75/160 (46%), Gaps = 27/160 (16%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + +AIV D PG TRD + + + G+ + DT GI Sbjct: 6 VAVVGRPNVGKSTLFNKLCGQRLAIVEDTPGITRDRIFANCEWSGHEFMLVDTGGIEPK- 64 Query: 282 DIVEKEGI-----KRTFLEVENADLILLLKEIN-----SKKEISF---PKNIDFIFIGTK 328 EGI ++ + ++ AD I+++ ++ + +E++ + I K Sbjct: 65 ---ATEGILAHMREQAEIAIDTADCIIMVVDVRDGLTAADEEVAHMLRRSHKPIILAVNK 121 Query: 329 SD--------LYSTYTEEYDHL--ISSFTGEGLEELINKI 358 D LY Y +D + ISS G G +L++ + Sbjct: 122 CDKTGEAPMELYEFYNLGFDEVLPISSVHGHGTGDLLDAV 161 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 3/87 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKSSL N + ++ IV + GTTRD + +D +DTAG+R+ Sbjct: 179 VAIIGRPNVGKSSLTNRILGENRMIVANEAGTTRDAIDTPVDNAYGKFIFTDTAGLRKRS 238 Query: 282 DI---VEKEGIKRTFLEVENADLILLL 305 +I +E+ + R VE + + L+L Sbjct: 239 NISDGLERYMVVRALAAVERSRVALIL 265 >gi|119385154|ref|YP_916210.1| GTP-binding protein EngA [Paracoccus denitrificans PD1222] gi|166225834|sp|A1B4S0|DER_PARDP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|119374921|gb|ABL70514.1| small GTP-binding protein [Paracoccus denitrificans PD1222] Length = 489 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 74/167 (44%), Gaps = 29/167 (17%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE- 279 +I ++G NAGKS+L N + +D + G TRD +++ + G V+I DTAG+R+ Sbjct: 200 QIAVIGRPNAGKSTLINKILGEDRLLTGPEAGITRDSISVSTNFMGTPVRIFDTAGMRKK 259 Query: 280 --TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF--------IFIGTKS 329 D VEK + V A+++++L ++ E + DF + K Sbjct: 260 ARVTDKVEKLSVADGLRAVRFAEVVVVLLDVGIPFEQQDLRIADFAETEGRAVVVAANKW 319 Query: 330 DLYSTYTEEYDHL------------------ISSFTGEGLEELINKI 358 DL E+ L +S+ TG+GL+ L N I Sbjct: 320 DLEEDKPEKLKELREAFERLLPQLKGAPLVTVSARTGKGLDRLHNAI 366 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 1/87 (1%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR- 278 + + I+G N GKS+LFN L K +A+V D PG TRD+ L + D+AG+ Sbjct: 3 FTLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGAGRLGDLRFIVVDSAGLEI 62 Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL 305 DD ++ + T V+ AD+ L + Sbjct: 63 AEDDSLQGRMRRLTERAVDEADVCLFV 89 >gi|226227007|ref|YP_002761113.1| GTP-binding protein EngA [Gemmatimonas aurantiaca T-27] gi|259645877|sp|C1A8T3|DER_GEMAT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|226090198|dbj|BAH38643.1| GTP-binding protein EngA [Gemmatimonas aurantiaca T-27] Length = 436 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 68/149 (45%), Gaps = 14/149 (9%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R+ ++ ++G N GKSS N L +D +V+D GTTRD + + + DTAG Sbjct: 171 RDAVRVAVIGRPNVGKSSFVNRLLGEDRLVVSDESGTTRDAIDAPMRYHDTDLVFVDTAG 230 Query: 277 IRET---DDIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFI 325 +R DD VE RT ++++D+ +L+ + + +++ I + Sbjct: 231 LRRQSRIDDGVEFYSALRTRRAIDSSDVCILMIDATEGLQNQDLKIATMAWEAGRGLILV 290 Query: 326 GTKSDLYSTYTEEYDHLISSFTGEGLEEL 354 K DLY T D F E +E++ Sbjct: 291 INKWDLYEDKT---DKSADKFKKEAVEKV 316 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS LFN + + AIV+D GTTRD + + G + DT G+ E Sbjct: 6 VAVVGRPNVGKSHLFNRVIGEATAIVSDEAGTTRDRHFGEAEWAGRQFWLVDTGGLVEDS 65 Query: 282 DIVEKEGIKRTFLE-VENADLILLL 305 ++ I+R ++ +E ADL+L + Sbjct: 66 HLLMDTAIRRQVMQAIEEADLMLFV 90 >gi|85057761|ref|YP_456677.1| GTP-binding protein EngA [Aster yellows witches'-broom phytoplasma AYWB] gi|84789866|gb|ABC65598.1| GTP-binding protein [Aster yellows witches'-broom phytoplasma AYWB] Length = 479 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 5/89 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K ++G N GKS+L N+L IV+D+ GTT D + + +G +I DTAGI++ Sbjct: 217 KFCVVGRPNVGKSTLTNSLLASQRMIVSDMAGTTTDAVDTFFENDGQKYQIIDTAGIKKR 276 Query: 281 DDIVEKEGIKRTFLE----VENADLILLL 305 I E+E K +FL +E AD+ L+ Sbjct: 277 GKIYEQED-KYSFLRALGALEKADIACLV 304 Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 2/87 (2%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR- 278 +KI I+G N GKSSLFN + K AI G TRD + + DT GI Sbjct: 3 FKIAIVGRPNVGKSSLFNRIIGKRHAITHQKKGITRDRIYATAHWLTKTFGVIDTGGIEI 62 Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL 305 ++ +E+ I+ L V+ AD+I+ + Sbjct: 63 KSTPFLEQIKIQAQ-LAVDEADVIVFV 88 >gi|268315826|ref|YP_003289545.1| GTP-binding protein Era [Rhodothermus marinus DSM 4252] gi|262333360|gb|ACY47157.1| GTP-binding protein Era [Rhodothermus marinus DSM 4252] Length = 311 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 71/165 (43%), Gaps = 28/165 (16%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R+GY + I+G N GKS+L NAL ++IVT P TTR + L + Y + DT G Sbjct: 24 RSGY-VAIVGKPNVGKSTLMNALLGHKLSIVTPKPQTTRHRVLGILSGDTYQIVFLDTPG 82 Query: 277 IRETDDIVEKEGIKRTF-LEVENADLILLLKEINSKKEISFPKNIDFIFIGTKS------ 329 + + E + RT V +ADL+L + E K P I +G + Sbjct: 83 VLKKARYKLHEHMLRTVDRAVADADLVLFMAEATQKA----PDTISLGHLGNRPAILALN 138 Query: 330 ------------DLYSTYTEEYDH----LISSFTGEGLEELINKI 358 L Y ++Y IS+ TG L+ L+ +I Sbjct: 139 KMDLVRNQEQVLPLVDAYMKQYPFEAVVPISALTGYNLDVLLKEI 183 >gi|171059545|ref|YP_001791894.1| GTP-binding protein EngA [Leptothrix cholodnii SP-6] gi|238689085|sp|B1XXK9|DER_LEPCP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|170776990|gb|ACB35129.1| small GTP-binding protein [Leptothrix cholodnii SP-6] Length = 448 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/88 (29%), Positives = 49/88 (55%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ + G N GKS+L N ++ + D+PGTTRD + + + ++ DTAG+R Sbjct: 183 RLAVAGRPNVGKSTLINTWLGEERLVAFDLPGTTRDAIHVPFERGDKKYELIDTAGLRRK 242 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +EK + +T + +A+++LLL Sbjct: 243 GKVFESIEKFSVVKTLQAISDANVVLLL 270 Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 30/55 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 I I+G N GKS+LFN L + AIV D G TRD D L+ + + DT G Sbjct: 5 IAIVGRPNVGKSTLFNRLTGRRDAIVADFAGLTRDRHYGDGKLDNHEFIVIDTGG 59 >gi|332298977|ref|YP_004440899.1| GTP-binding protein engA [Treponema brennaborense DSM 12168] gi|332182080|gb|AEE17768.1| GTP-binding protein engA [Treponema brennaborense DSM 12168] Length = 497 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 7/112 (6%) Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 L +KN S + + + + IR + I+G N GKS+L N L +IV D GTTRD Sbjct: 209 LIVKNLDFSRVERDESAKPIR----VAIMGKPNTGKSTLSNKLTHTQASIVCDYAGTTRD 264 Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305 V+ + + DTAGIR + +E + R +++ D++ L+ Sbjct: 265 VVEGSFTYQDTAFLVLDTAGIRRKARVSENIEYYSVNRAIKTLDDTDVVFLM 316 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 34/62 (54%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 RN +VI G N GKS+LFN + +K AI PG TRD + + G V++ DT G Sbjct: 47 RNLPLVVIAGRPNVGKSTLFNRILRKRRAITDPTPGVTRDPIEETAFINGCPVRLMDTGG 106 Query: 277 IR 278 + Sbjct: 107 FK 108 >gi|227549322|ref|ZP_03979371.1| GTP-binding protein EngA [Corynebacterium lipophiloflavum DSM 44291] gi|227078641|gb|EEI16604.1| GTP-binding protein EngA [Corynebacterium lipophiloflavum DSM 44291] Length = 497 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 49/180 (27%), Positives = 83/180 (46%), Gaps = 35/180 (19%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSL N L++ + ++V ++ GTT D + + L+G L K DTAG+R+ Sbjct: 236 RVAIVGRPNVGKSSLLNKLSRSNRSVVDNVAGTTVDPVDELIQLDGALWKFIDTAGLRKK 295 Query: 281 DDIVEKEGIK-----RTFLEVENADLILLLKEINSKKEISFPKN--IDFIFIGTKS---- 329 + G + RT +E A++ ++L I++ +EIS I + K+ Sbjct: 296 --VKNARGHEYYASLRTRGTIEAAEVCVVL--IDASQEISEQDQRVISMVLEAGKAMVIC 351 Query: 330 ---------DLYSTYTEEYDHL-----------ISSFTGEGLEELINKIKSILSNKFKKL 369 D + E+D + IS+ TG GL L + L N K++ Sbjct: 352 FNKWDLMDEDRRYYFDREFDEMMGHLPWVTKLNISADTGRGLHRLEAAMTEALENWDKRI 411 Score = 43.5 bits (101), Expect = 0.069, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 29/55 (52%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 + I+G N GKS+L N + A+V D PG TRD ++ D G + DT G Sbjct: 63 VSIVGRPNVGKSTLVNRFIGRREAVVEDHPGVTRDRVSYISDWNGRRFWVQDTGG 117 >gi|113971588|ref|YP_735381.1| small GTP-binding protein [Shewanella sp. MR-4] gi|113886272|gb|ABI40324.1| small GTP-binding protein [Shewanella sp. MR-4] Length = 412 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 46/173 (26%), Positives = 82/173 (47%), Gaps = 26/173 (15%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIR 278 Y I ++G NAGKSSL N +A + ++IV+DI GTT D +T +L+ V DTAGI Sbjct: 22 YHIALVGRRNAGKSSLLNMIAGQQISIVSDIKGTTTDAVTKAYELQPLGPVTFYDTAGI- 80 Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKE-----------INSKKEISFPKNIDFIFIGT 327 + D + +K T + +D+ LL+ + +N +++ P + + Sbjct: 81 DDDGELGAMRVKATRKVLFRSDMALLVVDEQGLYPSDIALVNEIQQMRMP----ILVVFN 136 Query: 328 KSDLYSTYTEEYDH---------LISSFTGEGLEELINKIKSILSNKFKKLPF 371 K+D+ + E+ ++S+ TG + L I + ++K+ P Sbjct: 137 KADICTPKAEDIAFCQQQSLPFIVVSATTGLAAKMLKQLIIDLAPAEYKQEPM 189 >gi|300992774|ref|ZP_07180049.1| small GTP-binding protein [Escherichia coli MS 45-1] gi|300406801|gb|EFJ90339.1| small GTP-binding protein [Escherichia coli MS 45-1] Length = 276 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 40/108 (37%), Positives = 57/108 (52%), Gaps = 4/108 (3%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L +S HI + L ++ + I I+G S AGKSSL NAL + +V V+D+ TR+V Sbjct: 38 LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQ 96 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305 L GY + I+D G+ E+ D E E + R L DL+L L Sbjct: 97 RFRLSGHGYSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 142 >gi|304316658|ref|YP_003851803.1| GTP-binding protein Era [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778160|gb|ADL68719.1| GTP-binding protein Era [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 299 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 6/87 (6%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 ++G +N GKS+L NAL ++ VAI +D P TTR+ + L E Y V DT GI + Sbjct: 10 LIGRTNVGKSTLLNALLEEKVAITSDKPQTTRNTIQGILTGEDYQVVFIDTPGIHKPKHK 69 Query: 284 VEK---EGIKRTFLEVENADLILLLKE 307 + + E +K+T EV DLI+ + E Sbjct: 70 LSEIMIESVKKTLTEV---DLIIYMVE 93 >gi|42523421|ref|NP_968801.1| GTP-binding protein [Bdellovibrio bacteriovorus HD100] gi|39575627|emb|CAE79794.1| probable GTP-binding protein [Bdellovibrio bacteriovorus HD100] Length = 449 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 38/66 (57%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+LFN + + A+V + G TRD++ +D+ G + DT GI E Sbjct: 12 KVAIIGRPNVGKSTLFNIITETRKAVVKNQAGVTRDIMIEPVDIWGKQFDLIDTGGITEA 71 Query: 281 DDIVEK 286 DI K Sbjct: 72 GDIFSK 77 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 51/190 (26%), Positives = 81/190 (42%), Gaps = 34/190 (17%) Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 ++ G I I+G N GKSS+ NA+ + IV+DI GTT D + + DTA Sbjct: 177 VKEGMNIAIVGKPNVGKSSICNAILGYNRMIVSDIAGTTIDSVDSPFVYNDKKYTLVDTA 236 Query: 276 GIRETDDIVEKEGIKRTFLEVE---NADLILLLKEIN---SKKEISFPKNI-----DFIF 324 G+R + E I F E AD++LL+ + + ++ + I I Sbjct: 237 GLRRSAKREEDLEIISAFKSQEAIRRADIVLLMVDGTVGPTDQDARIMQAILEDHKGVIV 296 Query: 325 IGTKSDLYSTYTEEYD-----------------HLI--SSFTGEGLEELINKIKSILSNK 365 + KSDL EY H++ S+ TG GLE+L I+ + Sbjct: 297 VANKSDLGGKEVPEYRKTFREQVERVFHFFTDVHIVFTSAKTGYGLEDLFEMIEKVAH-- 354 Query: 366 FKKLPFSIPS 375 ++ F +P+ Sbjct: 355 --QMTFRVPT 362 >gi|91977473|ref|YP_570132.1| GTP-binding protein EngA [Rhodopseudomonas palustris BisB5] gi|123748964|sp|Q135K8|DER_RHOPS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|91683929|gb|ABE40231.1| Small GTP-binding protein domain [Rhodopseudomonas palustris BisB5] Length = 460 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/96 (30%), Positives = 54/96 (56%), Gaps = 3/96 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G NAGKS+ N L +D + + GTTRD + ++++ +G +I DTAG+R Sbjct: 190 RVAIVGRPNAGKSTFINRLLGEDRLLTSPEAGTTRDSIAVEVNWKGRDFRIFDTAGLRRR 249 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKE 313 I +EK + V A++++L+ + ++ E Sbjct: 250 SRIEEKLEKLSVADALRAVRFAEVVVLMMDSQNRFE 285 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 75/161 (46%), Gaps = 18/161 (11%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 + I+G N GKS+LFN L + +A+V D PG TRD + L I DTAG+ E Sbjct: 3 FTFAIIGRPNVGKSTLFNRLVGQKLALVDDTPGVTRDRREGEGRLGDLEFTIIDTAGLDE 62 Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPK--NIDFIFIGTKSD 330 + ++T +E AD ++ + + N + F + N + + KS+ Sbjct: 63 GAKGSLTARMQQQTETAIELADALMFVFDARAGLTPNDRAFADFARRANKPVVLVANKSE 122 Query: 331 LYS---TYTEEY-----DHL-ISSFTGEGLEELINKIKSIL 362 + E Y D + IS+ GEGL EL + +++++ Sbjct: 123 GKAGEIGAMESYALGLGDPVQISAEHGEGLSELYDALRALM 163 >gi|256851011|ref|ZP_05556400.1| ribosome-associated GTPase EngA [Lactobacillus jensenii 27-2-CHN] gi|260661223|ref|ZP_05862137.1| ribosome-associated GTPase EngA [Lactobacillus jensenii 115-3-CHN] gi|282932036|ref|ZP_06337494.1| ribosome-associated GTPase EngA [Lactobacillus jensenii 208-1] gi|256616073|gb|EEU21261.1| ribosome-associated GTPase EngA [Lactobacillus jensenii 27-2-CHN] gi|260548160|gb|EEX24136.1| ribosome-associated GTPase EngA [Lactobacillus jensenii 115-3-CHN] gi|281303803|gb|EFA95947.1| ribosome-associated GTPase EngA [Lactobacillus jensenii 208-1] Length = 436 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 46/87 (52%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN + + +AIV D PG TRD G+ I DT GI Sbjct: 6 VAIVGQPNVGKSTLFNRIINERLAIVEDRPGVTRDRNYAKASWLGHEFNIIDTGGITWEG 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI 308 +E E + + +E AD+I+++ + Sbjct: 66 GRIEDEIRAQADIAMEEADVIVMITSV 92 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 46/180 (25%), Positives = 82/180 (45%), Gaps = 30/180 (16%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDD 282 ++G N GKSS+ NA+ + IV + GTTRD + E G ++ DTAGIR Sbjct: 179 VIGRPNVGKSSIINAMLGQKRVIVANEEGTTRDAVDTPFVAEDGTKFRMIDTAGIRRRGK 238 Query: 283 I---VEKEGIKRTFLEVENADLILLLKEINS------KKEISFPKNI--DFIFIGTKSDL 331 + EK + R ++ +D++ L+ + ++ K F + I + K DL Sbjct: 239 VYEKTEKYSVLRAQAAIQRSDVVCLVLDASTGIREQDKHVAGFAHDAGRGMIIVVNKWDL 298 Query: 332 -----------YSTYTEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLPFSI 373 EE+ +L +S+ TG+ L++L + IK + N+ +++ S+ Sbjct: 299 PKKDSNSAKDFTRVIREEFQYLDYAPIIFVSAKTGKNLDQLPDLIKEVAENQSQRIQSSV 358 >gi|84503431|ref|ZP_01001491.1| GTP-binding protein EngA [Oceanicola batsensis HTCC2597] gi|84388218|gb|EAQ01170.1| GTP-binding protein EngA [Oceanicola batsensis HTCC2597] Length = 494 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 1/87 (1%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 + + I+G N GKS+LFN L K +A+V + PG TRD+ D L + DTAG+ E Sbjct: 3 FTLAIVGRPNVGKSTLFNRLVGKKLALVDNQPGVTRDLREGDARLGHLKFTVIDTAGLEE 62 Query: 280 -TDDIVEKEGIKRTFLEVENADLILLL 305 TD+ ++ K T V AD+ L + Sbjct: 63 ATDESLQGRMRKLTERAVGMADVCLFV 89 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 28/88 (31%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 ++ ++G NAGKS+L N + ++ + G TRD +++ LD EG V++ DTAG+R Sbjct: 209 QVAVVGRPNAGKSTLINRILGEERLLTGPEAGITRDSISLRLDWEGLPVRLFDTAGMRKR 268 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305 + D +EK + V+ A+++++L Sbjct: 269 AKVQDKLEKLSVSDGLRAVKFAEVVVVL 296 >gi|66815479|ref|XP_641756.1| hypothetical protein DDB_G0279259 [Dictyostelium discoideum AX4] gi|60469791|gb|EAL67778.1| hypothetical protein DDB_G0279259 [Dictyostelium discoideum AX4] Length = 841 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 32/74 (43%), Positives = 49/74 (66%), Gaps = 2/74 (2%) Query: 207 ISQGKLGEIIRNG-YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID-LDL 264 +S KL E ++ G +I I+G NAGKSSL N + +++ +IV+DIPGTT D + + L Sbjct: 331 LSLEKLEEDLKPGPIRISIVGQPNAGKSSLLNKIIEEERSIVSDIPGTTHDPVDCNFLWR 390 Query: 265 EGYLVKISDTAGIR 278 + + + + DTAGIR Sbjct: 391 DTHELSLIDTAGIR 404 Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust. Identities = 48/169 (28%), Positives = 79/169 (46%), Gaps = 27/169 (15%) Query: 209 QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK-KDVAIVTDIPGTTRDVLTIDLDLEGY 267 Q L + I N I I+G N GKS++FN + + + A+V +IPGTTRD + L G Sbjct: 142 QRVLMKPISNKPVIAIIGKPNVGKSTIFNRIIEGQRRALVEEIPGTTRDRYYGEGFLYGR 201 Query: 268 LVKISDTAGI--RETDDIVEKEGIKRTFLEV--ENADLILLLKEINS------------- 310 + DT G+ +D + +G+ + E+ E AD IL + + S Sbjct: 202 EFILVDTGGLIGESKEDKDQFQGVIQDQAEIAMEEADAILFVLDYKSGLTSIDKELARML 261 Query: 311 ---KKEISFPKNIDFIFIG-TKSDLYSTYTEEYDHLISSFTGEGLEELI 355 ++++ P I+IG K+D S E+++ + + T G E I Sbjct: 262 RSKRQKLGKP-----IYIGVNKADNVSMRGEDFEEMKTQITRLGFGEPI 305 >gi|57505277|ref|ZP_00371206.1| ferrous iron transport protein B [Campylobacter upsaliensis RM3195] gi|57016413|gb|EAL53198.1| ferrous iron transport protein B [Campylobacter upsaliensis RM3195] Length = 669 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/94 (31%), Positives = 52/94 (55%), Gaps = 2/94 (2%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I+++G N GKSSL NAL K ++ V + PG T + + + + Y ++ D G D Sbjct: 6 IILVGQPNVGKSSLINALCKSNLK-VGNFPGVTVEKASAKIVYKNYTLEFIDLPGTYALD 64 Query: 282 DIVEKEGIKRTFLEVENADLIL-LLKEINSKKEI 314 E+E I + +++ +N DLI+ +L N K+ + Sbjct: 65 GYSEEEKITQNYIKTQNYDLIINILDSTNLKRNL 98 >gi|296393716|ref|YP_003658600.1| ribosome-associated GTPase EngA [Segniliparus rotundus DSM 44985] gi|296180863|gb|ADG97769.1| ribosome-associated GTPase EngA [Segniliparus rotundus DSM 44985] Length = 450 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 43/84 (51%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS+L N + A+V D+PG TRD ++ D + G + DT G Sbjct: 14 IAIVGRPNVGKSTLVNRFVGRRAAVVEDVPGVTRDRVSYDAEWGGRSFLVQDTGGWEPDA 73 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + ++ L + AD+ILL+ Sbjct: 74 TGIGLSIAQQAELAMATADVILLV 97 Score = 43.1 bits (100), Expect = 0.084, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 51/90 (56%), Gaps = 7/90 (7%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ ++G N GKSSL N L+ ++ ++V + GTT D + + L+G + DTAG+R Sbjct: 186 RVALVGRPNVGKSSLINKLSGENRSVVDSVAGTTVDPVDSLIALDGEEWQFVDTAGLRR- 244 Query: 281 DDIVEKEGIK-----RTFLEVENADLILLL 305 + + G + RT +E A+++++L Sbjct: 245 -KVGQASGHEFYAAVRTKSAIEAAEVVIVL 273 >gi|291569962|dbj|BAI92234.1| probable small GTP-binding protein [Arthrospira platensis NIES-39] Length = 222 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 1/86 (1%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 N + ++G N GKS LFNAL V V++ PGTT D+ T D+ + + I DT G+ Sbjct: 38 NKPTVALVGSPNVGKSVLFNALTSHYVT-VSNYPGTTVDITTGDMIIGDKAIAIIDTPGM 96 Query: 278 RETDDIVEKEGIKRTFLEVENADLIL 303 I E+E + R L DL++ Sbjct: 97 YSLLPITEEEKVGRDLLMTRGIDLVI 122 >gi|238650994|ref|YP_002916850.1| GTP-binding protein EngA [Rickettsia peacockii str. Rustic] gi|259645885|sp|C4K2K1|DER_RICPU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|238625092|gb|ACR47798.1| GTP-binding protein EngA [Rickettsia peacockii str. Rustic] Length = 447 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L+ + AIV D+PG TRD D + + + DT G+ E Sbjct: 6 ITLVGRPNVGKSTLFNRLSIRKKAIVHDLPGVTRDRKYTDGKIGSFEFLLIDTPGLDENP 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + + I++T + ADLI + Sbjct: 66 NSMGERLIEQTTKAILEADLICFM 89 Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 36/65 (55%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +IV+ G NAGKS+ NAL + + G TR+ + ID + +K+ DTAG+R+ Sbjct: 181 QIVVSGRPNAGKSTFINALINDERLLTGPEAGITRESIEIDWQYKNNHIKLIDTAGLRKK 240 Query: 281 DDIVE 285 I E Sbjct: 241 STITE 245 >gi|15892953|ref|NP_360667.1| GTP-binding protein EngA [Rickettsia conorii str. Malish 7] gi|24636839|sp|Q92GU2|DER_RICCN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|15620147|gb|AAL03568.1| conserved GTP-binding protein [Rickettsia conorii str. Malish 7] Length = 447 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L+ + AIV D+PG TRD D + + + DT G+ E Sbjct: 6 ITLVGRPNVGKSTLFNRLSIRKKAIVHDLPGVTRDRKYTDGKIGSFEFLLIDTPGLDENP 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + + I++T + ADLI + Sbjct: 66 NSMGERLIEQTTKAILEADLICFM 89 Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 36/65 (55%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +IV+ G NAGKS+ NAL + + G TR+ + ID + +K+ DTAG+R+ Sbjct: 181 QIVVSGRPNAGKSTFINALINDERLLTGPEAGITRESIEIDWQYKNNHIKLIDTAGLRKK 240 Query: 281 DDIVE 285 I E Sbjct: 241 STITE 245 >gi|117926861|ref|YP_867478.1| small GTP-binding protein [Magnetococcus sp. MC-1] gi|117610617|gb|ABK46072.1| small GTP-binding protein [Magnetococcus sp. MC-1] Length = 495 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 51/89 (57%), Gaps = 4/89 (4%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRE 279 ++ ++G NAGKSSL N L ++ + ++I GTTRD + + + D G V + DTAGIR Sbjct: 213 RLAVVGCPNAGKSSLVNRLVGEERLLASEIAGTTRDSIDVPITDANGETVILVDTAGIRR 272 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLL 305 + VEK + +E A++ +L+ Sbjct: 273 KSRVSLRVEKFAVIAALKSMERAEVAILV 301 Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 3/86 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + A+V D PG TRD + + DT G E D Sbjct: 19 VALVGRPNVGKSTLFNRLTRTRDALVDDTPGLTRDRQYGIMKRGDTPFPMVDTGGF-EAD 77 Query: 282 DIVEKEGIKR--TFLEVENADLILLL 305 + R T L +E AD+I+ + Sbjct: 78 PGETMVSLIRGQTILAIEEADIIVFV 103 >gi|315122134|ref|YP_004062623.1| GTP-binding protein EngA [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495536|gb|ADR52135.1| GTP-binding protein EngA [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 448 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 49/88 (55%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I ++G N GKS+L N L + ++ GTTRD + I + + + +KI DTAG+R+ Sbjct: 182 RIAVVGRPNVGKSTLINRLLGYNRVLIGPKAGTTRDSIPISWEWKNHPIKIFDTAGMRKP 241 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 I VEK+ + ++ + + ++L Sbjct: 242 SRIIEQVEKKSVTKSMQSIRVCETTIVL 269 Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust. Identities = 33/104 (31%), Positives = 46/104 (44%), Gaps = 25/104 (24%) Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-RETDDIVEKEGIKRTFLEVENADLI 302 +AIV D PG TRD L + G+ + DTAGI E + K+ +T + ++ A L Sbjct: 1 MAIVGDCPGMTRDRLYGKAIINGFEFNVIDTAGIENENSHFIAKQTNDQTEIAIDEAHLA 60 Query: 303 LLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSF 346 L L I+SK I+ YDHLI+ F Sbjct: 61 LFL--IDSKSGIT----------------------PYDHLIAKF 80 >gi|297538000|ref|YP_003673769.1| ferrous iron transport protein B [Methylotenera sp. 301] gi|297257347|gb|ADI29192.1| ferrous iron transport protein B [Methylotenera sp. 301] Length = 596 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 3/92 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I +LG N GKS+LFN ++ A V + PG T D+++ + + G++ ++ D GI + Sbjct: 3 RIALLGMPNTGKSTLFNRISGAS-ARVGNWPGITVDLMSAKILIGGHIAELIDLPGIYDL 61 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKK 312 E E + R FL DLI++L +NS + Sbjct: 62 HGFSEDEQVVRRFLSNNAVDLIIVL--LNSSQ 91 >gi|253795566|ref|YP_003038662.1| putative tRNA modification GTPase TrmE [Candidatus Hodgkinia cicadicola Dsem] gi|253739874|gb|ACT34209.1| putative tRNA modification GTPase TrmE [Candidatus Hodgkinia cicadicola Dsem] Length = 383 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/146 (29%), Positives = 74/146 (50%), Gaps = 6/146 (4%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 ++G SNAGKSSLFNAL AIV TTRDV+++ +G +V DT G+ T D Sbjct: 206 VIGLSNAGKSSLFNALTHDVKAIVHRGKMTTRDVVSVR---KGEVV-FCDTPGLENTADD 261 Query: 284 VEKEGIKRTFLEVENADLILLLKEINSKKE-ISFPKNIDFIFIGTKSDL-YSTYTEEYDH 341 VE + + V+ A++ +++ + + + +K+DL + + D Sbjct: 262 VEAKALAAAKRRVDTANVTVVVWAGDKPPSFVRLSSRSAVVTATSKADLVHKLKPSQADV 321 Query: 342 LISSFTGEGLEELINKIKSILSNKFK 367 S++T EG+ +L K++ + + K Sbjct: 322 ATSAYTLEGVTKLERKLRRLCRSVIK 347 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 57/121 (47%), Gaps = 9/121 (7%) Query: 17 PSAISIIRLSGPSCFQVCEFICKKKKPFPRK-ASLRYFFGLDGRILD----KGLLIVFPS 71 P AI I+R++G + + K P+ A + G L+ G++ P+ Sbjct: 30 PCAICIVRITGSGTLRALTKLVSK---LPKAGACAVQKLAIAGEALNDMITTGVVRWQPA 86 Query: 72 PESFTGEDSAEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESL 131 P S TGED AE G VV ++ +L ++ A GEF+RRA N K+ L + + L Sbjct: 87 PRSPTGEDYAEVSTVGASWVVESVVSKLLSW-GVKKAARGEFTRRALANNKLALADVKQL 145 Query: 132 A 132 A Sbjct: 146 A 146 >gi|228907236|ref|ZP_04071096.1| GTP-binding protein engA [Bacillus thuringiensis IBL 200] gi|228852376|gb|EEM97170.1| GTP-binding protein engA [Bacillus thuringiensis IBL 200] Length = 436 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 3/85 (3%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 ++G N GKSSL NAL ++ IV++I GTTRD + + I DTAG+R+ + Sbjct: 180 LIGRPNVGKSSLVNALLGQERVIVSNIAGTTRDAVDTPYSKDDQDYVIIDTAGMRKKGKV 239 Query: 284 ---VEKEGIKRTFLEVENADLILLL 305 EK + R +E +D++L++ Sbjct: 240 YESTEKYSVLRALRAIERSDVVLVV 264 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS++FN + + V+IV DIPG TRD + + + I DT GI D Sbjct: 6 IAIVGRPNVGKSTIFNRIVGERVSIVEDIPGITRDRIYSAGEWLNHEFNIIDTGGIDIGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + ++ + ++ AD+I+ + Sbjct: 66 EPFLTQIRQQAEVAIDEADVIIFM 89 >gi|229016860|ref|ZP_04173788.1| GTP-binding protein engA [Bacillus cereus AH1273] gi|229023066|ref|ZP_04179580.1| GTP-binding protein engA [Bacillus cereus AH1272] gi|228738212|gb|EEL88694.1| GTP-binding protein engA [Bacillus cereus AH1272] gi|228744421|gb|EEL94495.1| GTP-binding protein engA [Bacillus cereus AH1273] Length = 436 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 3/85 (3%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 ++G N GKSSL NAL ++ IV++I GTTRD + + I DTAG+R+ + Sbjct: 180 LIGRPNVGKSSLVNALLGQERVIVSNIAGTTRDAVDTPYSKDDQDYVIIDTAGMRKKGKV 239 Query: 284 ---VEKEGIKRTFLEVENADLILLL 305 EK + R +E +D++L++ Sbjct: 240 YESTEKYSVLRALRAIERSDVVLVV 264 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS++FN + + V+IV DIPG TRD + + + I DT GI D Sbjct: 6 IAIVGRPNVGKSTIFNRIVGERVSIVEDIPGITRDRIYSAGEWLNHEFNIIDTGGIDIGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + ++ + ++ AD+I+ + Sbjct: 66 EPFLTQIRQQAEVAIDEADVIIFM 89 >gi|218896533|ref|YP_002444944.1| ribosome-associated GTPase EngA [Bacillus cereus G9842] gi|228900184|ref|ZP_04064416.1| GTP-binding protein engA [Bacillus thuringiensis IBL 4222] gi|228938715|ref|ZP_04101319.1| GTP-binding protein engA [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228964578|ref|ZP_04125687.1| GTP-binding protein engA [Bacillus thuringiensis serovar sotto str. T04001] gi|228971597|ref|ZP_04132220.1| GTP-binding protein engA [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978207|ref|ZP_04138584.1| GTP-binding protein engA [Bacillus thuringiensis Bt407] gi|226741129|sp|B7IP82|DER_BACC2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|218545843|gb|ACK98237.1| ribosome-associated GTPase EngA [Bacillus cereus G9842] gi|228781224|gb|EEM29425.1| GTP-binding protein engA [Bacillus thuringiensis Bt407] gi|228788120|gb|EEM36076.1| GTP-binding protein engA [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228795112|gb|EEM42609.1| GTP-binding protein engA [Bacillus thuringiensis serovar sotto str. T04001] gi|228820956|gb|EEM66977.1| GTP-binding protein engA [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228859454|gb|EEN03882.1| GTP-binding protein engA [Bacillus thuringiensis IBL 4222] gi|326939221|gb|AEA15117.1| GTP-binding protein EngA [Bacillus thuringiensis serovar chinensis CT-43] Length = 436 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 3/85 (3%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 ++G N GKSSL NAL ++ IV++I GTTRD + + I DTAG+R+ + Sbjct: 180 LIGRPNVGKSSLVNALLGQERVIVSNIAGTTRDAVDTPYSKDDQDYVIIDTAGMRKKGKV 239 Query: 284 ---VEKEGIKRTFLEVENADLILLL 305 EK + R +E +D++L++ Sbjct: 240 YESTEKYSVLRALRAIERSDVVLVV 264 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS++FN + + V+IV DIPG TRD + + + I DT GI D Sbjct: 6 IAIVGRPNVGKSTIFNRIVGERVSIVEDIPGITRDRIYSAGEWLNHEFNIIDTGGIDIGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + ++ + ++ AD+I+ + Sbjct: 66 EPFLTQIRQQAEVAIDEADVIIFM 89 >gi|163939419|ref|YP_001644303.1| GTP-binding protein EngA [Bacillus weihenstephanensis KBAB4] gi|229010911|ref|ZP_04168107.1| GTP-binding protein engA [Bacillus mycoides DSM 2048] gi|229058239|ref|ZP_04196627.1| GTP-binding protein engA [Bacillus cereus AH603] gi|229132411|ref|ZP_04261265.1| GTP-binding protein engA [Bacillus cereus BDRD-ST196] gi|229166450|ref|ZP_04294206.1| GTP-binding protein engA [Bacillus cereus AH621] gi|229710726|sp|A9VMB3|DER_BACWK RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|163861616|gb|ABY42675.1| small GTP-binding protein [Bacillus weihenstephanensis KBAB4] gi|228617024|gb|EEK74093.1| GTP-binding protein engA [Bacillus cereus AH621] gi|228651117|gb|EEL07098.1| GTP-binding protein engA [Bacillus cereus BDRD-ST196] gi|228720103|gb|EEL71687.1| GTP-binding protein engA [Bacillus cereus AH603] gi|228750311|gb|EEM00141.1| GTP-binding protein engA [Bacillus mycoides DSM 2048] Length = 436 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 3/85 (3%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 ++G N GKSSL NAL ++ IV++I GTTRD + + I DTAG+R+ + Sbjct: 180 LIGRPNVGKSSLVNALLGQERVIVSNIAGTTRDAVDTPYSKDDQDYVIIDTAGMRKKGKV 239 Query: 284 ---VEKEGIKRTFLEVENADLILLL 305 EK + R +E +D++L++ Sbjct: 240 YESTEKYSVLRALRAIERSDVVLVV 264 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS++FN + + V+IV DIPG TRD + + + I DT GI D Sbjct: 6 IAIVGRPNVGKSTIFNRIVGERVSIVEDIPGITRDRIYSAGEWLNHEFNIIDTGGIDIGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + ++ + ++ AD+I+ + Sbjct: 66 EPFLTQIRQQAEVAIDEADVIIFM 89 >gi|297205894|ref|ZP_06923289.1| ribosome-associated GTPase EngA [Lactobacillus jensenii JV-V16] gi|297149020|gb|EFH29318.1| ribosome-associated GTPase EngA [Lactobacillus jensenii JV-V16] Length = 439 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 46/87 (52%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN + + +AIV D PG TRD G+ I DT GI Sbjct: 9 VAIVGQPNVGKSTLFNRIINERLAIVEDRPGVTRDRNYAKASWLGHEFNIIDTGGITWEG 68 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI 308 +E E + + +E AD+I+++ + Sbjct: 69 GRIEDEIRAQADIAMEEADVIVMITSV 95 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 46/180 (25%), Positives = 82/180 (45%), Gaps = 30/180 (16%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDD 282 ++G N GKSS+ NA+ + IV + GTTRD + E G ++ DTAGIR Sbjct: 182 VIGRPNVGKSSIINAMLGQKRVIVANEEGTTRDAVDTPFVAEDGTKFRMIDTAGIRRRGK 241 Query: 283 I---VEKEGIKRTFLEVENADLILLLKEINS------KKEISFPKNI--DFIFIGTKSDL 331 + EK + R ++ +D++ L+ + ++ K F + I + K DL Sbjct: 242 VYEKTEKYSVLRAQAAIQRSDVVCLVLDASTGIREQDKHVAGFAHDAGRGMIIVVNKWDL 301 Query: 332 -----------YSTYTEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLPFSI 373 EE+ +L +S+ TG+ L++L + IK + N+ +++ S+ Sbjct: 302 PKKDSNSAKDFTRVIREEFQYLDYAPIIFVSAKTGKNLDQLPDLIKEVAENQSQRIQSSV 361 >gi|227495416|ref|ZP_03925732.1| bifunctional cytidylate kinase/GTP-binding protein [Actinomyces coleocanis DSM 15436] gi|226830963|gb|EEH63346.1| bifunctional cytidylate kinase/GTP-binding protein [Actinomyces coleocanis DSM 15436] Length = 727 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 7/96 (7%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I ++G N GKSSL N LA D +V D+ GTTRD + ++++G DTAG+R Sbjct: 468 RIALIGRPNVGKSSLLNQLAGSDRVVVNDLAGTTRDPVDELIEIDGRPWWFVDTAGVRRK 527 Query: 281 DDIVEKEGIK-----RTFLEVENADLILLLKEINSK 311 + G RT +E A+L L+L + + K Sbjct: 528 --MHRTTGADYYASIRTQAALEKAELALVLLDASEK 561 Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust. Identities = 24/84 (28%), Positives = 42/84 (50%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+L N + ++ A+V D PG TRD ++ G + DT G Sbjct: 294 LAIIGRPNVGKSTLVNRILERRAAVVQDTPGVTRDRVSYPAQWAGRDFTLVDTGGWEMDV 353 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++K + + +E AD ++ + Sbjct: 354 KGLDKSVADQAEIAIEMADAVIFV 377 >gi|213621470|ref|ZP_03374253.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 146 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 38/146 (26%), Positives = 71/146 (48%), Gaps = 18/146 (12%) Query: 262 LDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS------ 315 + ++G + I DTAG+R+ +D VE+ GI+R + E+E AD +L + + + + Sbjct: 2 IHIDGMPLHIIDTAGLRDANDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPADIWP 61 Query: 316 -----FPKNIDFIFIGTKSDLYST---YTEEYDH---LISSFTGEGLEELINKIKSILSN 364 PKN+ + K+D+ +E H +S+ TGEG++ L N +K + Sbjct: 62 DFIARLPKNLPITVVRNKADITGETLGISEVNGHSLVRLSARTGEGVDVLRNHLKQSMGF 121 Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYL 390 + + +RHL L++ +L Sbjct: 122 D-TNMEGGFLARRRHLQALAEAANHL 146 >gi|329766983|ref|ZP_08258511.1| GTP-binding protein Era [Gemella haemolysans M341] gi|328837708|gb|EGF87333.1| GTP-binding protein Era [Gemella haemolysans M341] Length = 302 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 50/197 (25%), Positives = 91/197 (46%), Gaps = 24/197 (12%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-IDLDLEGYLVKIS 272 E I+ G+ + I+G NAGKS+L N + ++ +AI++D P TTR+++ + D + +V I Sbjct: 4 EQIKTGF-VTIIGRPNAGKSTLLNNILQQKIAIMSDKPQTTRNIINGVYTDNDSQIVFI- 61 Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------------INSKKEISFP--- 317 DT GI + + +K ++ ++++ L+ IN KE+ P Sbjct: 62 DTPGIHKPKHRLGDYMMKLASSAIQESEIVYLIINASEKFGPGDQHLINIVKELKVPTFL 121 Query: 318 --KNIDFIFIGTKSDLYSTYTEEYDHL----ISSFTGEGLEELINKIKSILSNKFKKLPF 371 ID I + Y + YD + IS+ ++ L+N K L FK P Sbjct: 122 LINKIDLISPEQLIQIIEFYKDLYDFVEIVPISALKSINVDNLLNTTKKYLQPSFKMYPD 181 Query: 372 SIPSHKRHLYHLSQTVR 388 + + + +S+ +R Sbjct: 182 DVITDSPEYFVISEFIR 198 >gi|298505484|gb|ADI84207.1| ferrous iron transport protein B [Geobacter sulfurreducens KN400] Length = 663 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 32/83 (38%), Positives = 46/83 (55%), Gaps = 1/83 (1%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ ++G+ N GKS LFNAL VA V++ PGT+ +V EG +I DT G+ Sbjct: 23 KVALVGNPNVGKSVLFNALTGAYVA-VSNYPGTSVEVSRGAASFEGGSWEIIDTPGMYSI 81 Query: 281 DDIVEKEGIKRTFLEVENADLIL 303 I E+E + R L E D++L Sbjct: 82 LPITEEERVAREILLTERPDVVL 104 >gi|169827483|ref|YP_001697641.1| GTP-binding protein [Lysinibacillus sphaericus C3-41] gi|168991971|gb|ACA39511.1| GTP-binding protein [Lysinibacillus sphaericus C3-41] Length = 211 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN + + V+IV DIPG TRD + + + I DT GI D Sbjct: 6 VAIVGRPNVGKSTIFNRIVGERVSIVEDIPGVTRDRIYSSAEWLTHDFNIIDTGGIEIGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + ++ ++ + +E AD+I+ + Sbjct: 66 EPFLEQIRQQAEIAIEEADVIIFM 89 >gi|20093476|ref|NP_613323.1| small, Ras-like GTPase [Methanopyrus kandleri AV19] gi|19886302|gb|AAM01253.1| Small, Ras-like GTPase [Methanopyrus kandleri AV19] Length = 196 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/179 (24%), Positives = 80/179 (44%), Gaps = 23/179 (12%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273 E+ ++I +LG NAGKS+L NAL ++V V+++PGTT+ V + + + D Sbjct: 11 ELDSRAFRIAVLGPENAGKSTLVNALMGREVTEVSEVPGTTKTVSGYRWTSREFPLYVFD 70 Query: 274 TAGIRE-----------TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF 322 T G+ + +D+ EK G L V + + + + + I + +++ Sbjct: 71 TVGLADERGKRSKRGVRAEDVAEKLGRYDLALFVVDVTRHVGPETLRALHVIKYAADLET 130 Query: 323 IFIGTKSDLY------------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369 + + K DL T +S+ TGEG+ L+ +I+ + K + L Sbjct: 131 LLVANKIDLLDRGELEERLERIRERTGHRPIPVSALTGEGIGRLLREIERRVREKRRTL 189 >gi|254511655|ref|ZP_05123722.1| GTP-binding protein EngA [Rhodobacteraceae bacterium KLH11] gi|221535366|gb|EEE38354.1| GTP-binding protein EngA [Rhodobacteraceae bacterium KLH11] Length = 487 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280 + I+G N GKS+LFN L K +A+V D PG TRD+ + L + DTAG+ + T Sbjct: 5 LAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGEGRLGDLRFTVIDTAGLEDAT 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 DD ++ + T V+ AD+ L + Sbjct: 65 DDSLQSRMRRLTERAVDMADVCLFM 89 Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 5/71 (7%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL---EG--YLVKISDTA 275 ++ ++G NAGKS+L N + +D + G TRD +++ +D EG ++I DTA Sbjct: 199 QVAVVGRPNAGKSTLINKIMGEDRLLTGPEAGITRDAISLRVDWADPEGGSTPMRIFDTA 258 Query: 276 GIRETDDIVEK 286 G+R+ + EK Sbjct: 259 GMRKKAKVQEK 269 >gi|116333425|ref|YP_794952.1| GTP-binding protein EngA [Lactobacillus brevis ATCC 367] gi|122269888|sp|Q03SA1|DER_LACBA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|116098772|gb|ABJ63921.1| Predicted GTPase [Lactobacillus brevis ATCC 367] Length = 435 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN +A + ++IV D PG TRD + + G ++ DT GI D Sbjct: 6 VAIVGRPNVGKSTLFNRIAGERISIVEDTPGVTRDRIYSRAEWLGTEFRMIDTGGIDMGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + ++ + ++ AD+I+ + Sbjct: 66 EPFLTQITQQAEIAIDEADVIVFI 89 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 49/85 (57%), Gaps = 3/85 (3%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 ++G N GKSSL NA+ ++ IV++I GTTRD + + + DTAGIR+ + Sbjct: 179 LIGRPNVGKSSLVNAMLGEERVIVSNIAGTTRDAIDTKFVADDTKFTMVDTAGIRKRGKV 238 Query: 284 ---VEKEGIKRTFLEVENADLILLL 305 E+ + R ++++D++L++ Sbjct: 239 YENTERYSVMRAMRAIDDSDVVLVV 263 >gi|221505263|gb|EEE30917.1| GTP-binding protein engA, putative [Toxoplasma gondii VEG] Length = 1105 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/154 (25%), Positives = 72/154 (46%), Gaps = 22/154 (14%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI---- 277 + I+G N GKS+L N+L +++ +V + PGTT D + +G+ ++ DTAG+ Sbjct: 793 VAIIGRPNVGKSTLVNSLLQEERMVVDNRPGTTTDAVGTLWKFQGHPFRLIDTAGVTRGW 852 Query: 278 --RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTY 335 R TD ++E G++ T + N+ + +L + + ++ P S++ Sbjct: 853 KMRHTDLLLEA-GLQ-TLRNIRNSQVCILCIDASLARDTGQP--------------ISSH 896 Query: 336 TEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369 HL S G L + K + N+ +KL Sbjct: 897 ELALAHLASEKEGRCLAVCVTKWDLVPENEREKL 930 Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 8/89 (8%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+V++G N GKSSLFN L + IV+ GT+RD G + + DT G+ +T Sbjct: 252 KVVLVGRPNVGKSSLFNRL----ITIVSPQAGTSRDRKEARAVFGGLQLLLVDTGGLEDT 307 Query: 281 DDIVEKEGI----KRTFLEVENADLILLL 305 + E + K+ +++AD +L L Sbjct: 308 ETTEACELLINMRKQVRFALKDADCVLFL 336 >gi|295839702|ref|ZP_06826635.1| ribosome-associated GTPase EngA [Streptomyces sp. SPB74] gi|295827618|gb|EFG65509.1| ribosome-associated GTPase EngA [Streptomyces sp. SPB74] Length = 488 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 37/59 (62%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 ++ ++G N GKSSL N LA +D +V + GTTRD + ++L G K DTAGIR+ Sbjct: 227 RVALIGRPNVGKSSLLNKLAGEDRVVVNEQAGTTRDPVDELIELGGVTWKFVDTAGIRK 285 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 4/79 (5%) Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257 F D+ I + G + R + ++G N GKS+L N + + A+V D PG TRD Sbjct: 32 FDVEDVEDAIGEAGHGPLPR----LAVVGRPNVGKSTLVNRIIGRREAVVEDRPGVTRDR 87 Query: 258 LTIDLDLEGYLVKISDTAG 276 +T + + G K+ DT G Sbjct: 88 VTYEAEWAGRRFKLVDTGG 106 >gi|113955090|ref|YP_729987.1| GTP-binding protein Era [Synechococcus sp. CC9311] gi|113882441|gb|ABI47399.1| GTP-binding protein Era [Synechococcus sp. CC9311] Length = 317 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 48/206 (23%), Positives = 90/206 (43%), Gaps = 26/206 (12%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R+G+ + ++G N GKS+L N L +AI + + TTR+ L L + + + DT G Sbjct: 18 RSGF-VALIGRPNVGKSTLVNQLIGDKIAITSPVAQTTRNRLRAILTTDEAQLILVDTPG 76 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKE------------INSKKEISFPKNI---- 320 I + ++ + ++ + D +LLL E + ++ S P + Sbjct: 77 IHKPHHLLGERLVRTARSAIGEVDQVLLLLEGCEAPGRGDAFIVQLLRQQSLPVQVLLNK 136 Query: 321 -DFIFIGTKSDLYSTYTE---EYD---HLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373 D + + K + Y E E D H S+ +G+G EL+ I S++ + P + Sbjct: 137 WDLVPLEQKDAADAAYRELLSETDWPVHRCSALSGDGCPELVKAISSLMPEGPQLYPSDM 196 Query: 374 PSHKRHLYHLSQTVRYLEMASLNEKD 399 S + + + +R E LN ++ Sbjct: 197 VSDQPERLLMGELIR--EQVLLNTRE 220 >gi|323356705|ref|YP_004223101.1| GTPase [Microbacterium testaceum StLB037] gi|323273076|dbj|BAJ73221.1| predicted GTPase [Microbacterium testaceum StLB037] Length = 507 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/58 (44%), Positives = 37/58 (63%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 ++ ILG N GKSSL N A ++ +V ++ GTTRD + ++L G L + DTAGIR Sbjct: 242 RVAILGRPNVGKSSLLNKAAGEERVVVNELAGTTRDPVDEVVELGGKLWTLVDTAGIR 299 Score = 43.1 bits (100), Expect = 0.099, Method: Compositional matrix adjust. Identities = 23/84 (27%), Positives = 42/84 (50%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+L N + + A+V D PG TRD +T + + DT G Sbjct: 69 VAIVGRPNVGKSALVNRILGRREAVVEDTPGVTRDRVTYKAEWLDRRFSLVDTGGWEPDA 128 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 +++ + + ++ AD++L + Sbjct: 129 KGIDRSVAAQAEVAIDLADVVLFV 152 >gi|332982748|ref|YP_004464189.1| iron-only hydrogenase maturation protein HydF [Mahella australiensis 50-1 BON] gi|332700426|gb|AEE97367.1| iron-only hydrogenase maturation protein HydF [Mahella australiensis 50-1 BON] Length = 413 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 49/154 (31%), Positives = 79/154 (51%), Gaps = 24/154 (15%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280 I I G NAGKSS+ NA+ + A+V+D+ GTT D ++ ++L V I DTAG+ + Sbjct: 15 IAIFGRRNAGKSSIINAITNQKAALVSDVAGTTTDPVSKAMELLPIGPVVIIDTAGLDDI 74 Query: 281 DDIVEKEGIKRTFLEVENADLILLLK---------EINSKKEISFPKNIDFIFIGTKSDL 331 + E I+RT+ + DL +L+ E N + I KNI + K+D Sbjct: 75 GPLGEMR-IQRTYDVLNRTDLAVLVIDGEVGLTDFEENILRRIR-EKNIPVVGAVNKAD- 131 Query: 332 YSTYTE----EYDHL-------ISSFTGEGLEEL 354 + YT+ E++ +S+ TG+G++EL Sbjct: 132 KAVYTQEQLKEWEKKLKLELVEVSAATGQGIDEL 165 >gi|315639240|ref|ZP_07894402.1| ferrous iron transport protein B [Campylobacter upsaliensis JV21] gi|315480566|gb|EFU71208.1| ferrous iron transport protein B [Campylobacter upsaliensis JV21] Length = 669 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 51/92 (55%), Gaps = 2/92 (2%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I+++G N GKSSL NAL K ++ V + PG T + + + + Y ++ D G D Sbjct: 6 IILVGQPNVGKSSLINALCKSNLK-VGNFPGVTVEKASAKIVYKNYTLEFIDLPGTYALD 64 Query: 282 DIVEKEGIKRTFLEVENADLIL-LLKEINSKK 312 E+E I + +++ +N DLI+ +L N K+ Sbjct: 65 GYSEEEKITQNYIKTQNYDLIINILDSTNLKR 96 >gi|312890130|ref|ZP_07749673.1| GTP-binding protein Era [Mucilaginibacter paludis DSM 18603] gi|311297407|gb|EFQ74533.1| GTP-binding protein Era [Mucilaginibacter paludis DSM 18603] Length = 292 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 32/95 (33%), Positives = 56/95 (58%), Gaps = 1/95 (1%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R G+ + I+G NAGKS+L NAL + ++I+T TTR + ++ E Y + SDT G Sbjct: 4 RAGF-VSIIGKPNAGKSTLMNALVGEKMSIITPKAQTTRHRILGIVNEEDYQIVFSDTPG 62 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311 I + +++ + + + +AD++LL+ +IN K Sbjct: 63 IIKPHYALQETMMHQVSGSLVDADMVLLVTDINEK 97 >gi|182416887|ref|ZP_02948272.1| GTP-binding protein [Clostridium butyricum 5521] gi|237669589|ref|ZP_04529568.1| GTP-binding protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182379260|gb|EDT76760.1| GTP-binding protein [Clostridium butyricum 5521] gi|237654905|gb|EEP52466.1| GTP-binding protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 400 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 38/96 (39%), Positives = 59/96 (61%), Gaps = 4/96 (4%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTA 275 N I I G NAGKSSL NAL + +++V++IPGTT D ++ ++L G +V I DTA Sbjct: 8 NRLHISIFGKRNAGKSSLINALTNQSLSVVSEIPGTTTDPVSKSMELLPLGPIVLI-DTA 66 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311 G+ ++ + E I++T +E DL +L+ + SK Sbjct: 67 GLDDSGLLGELR-IEKTLKVIEKTDLGVLVFDACSK 101 >gi|148273155|ref|YP_001222716.1| GTP-binding protein EngA [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147831085|emb|CAN02030.1| putative GTP-binding protein [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 502 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 37/58 (63%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 ++ ILG N GKSSL N A ++ +V ++ GTTRD + +++ G + + DTAGIR Sbjct: 243 RVAILGRPNVGKSSLLNKAAGEERVVVNELAGTTRDPVDEQVEIAGKVWRFVDTAGIR 300 Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 30/55 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 + ++G N GKS+L N + + A+V D PG TRD ++ + G + DT G Sbjct: 70 LAVVGRPNVGKSALINRILGRREAVVEDTPGVTRDRVSYKAEHAGRWFTLVDTGG 124 >gi|318061403|ref|ZP_07980124.1| GTP-binding protein Der [Streptomyces sp. SA3_actG] gi|318078001|ref|ZP_07985333.1| GTP-binding protein Der [Streptomyces sp. SA3_actF] Length = 488 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 37/59 (62%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 ++ ++G N GKSSL N LA +D +V + GTTRD + ++L G K DTAGIR+ Sbjct: 227 RVALIGRPNVGKSSLLNKLAGEDRVVVNEQAGTTRDPVDELIELGGVTWKFVDTAGIRK 285 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 4/79 (5%) Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257 F D+ I + G + R + ++G N GKS+L N + + A+V D PG TRD Sbjct: 32 FDVEDVEDAIGEAGHGPLPR----LAVVGRPNVGKSTLVNRIIGRREAVVEDRPGVTRDR 87 Query: 258 LTIDLDLEGYLVKISDTAG 276 +T + + G K+ DT G Sbjct: 88 VTYEAEWAGRRFKLVDTGG 106 >gi|320011615|gb|ADW06465.1| ribosome-associated GTPase EngA [Streptomyces flavogriseus ATCC 33331] Length = 489 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/58 (44%), Positives = 37/58 (63%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 +I ++G N GKSSL N +A +D +V ++ GTTRD + ++L G K DTAGIR Sbjct: 228 RIALIGRPNVGKSSLLNKVAGEDRVVVNELAGTTRDPVDELINLGGITWKFIDTAGIR 285 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 32/55 (58%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 + ++G N GKS+L N + + A+V D PG TRD ++ + + G K+ DT G Sbjct: 54 LAVVGRPNVGKSTLVNRIIGRREAVVQDKPGVTRDRVSYEAEWAGRRFKVVDTGG 108 >gi|46205398|ref|ZP_00048589.2| COG1160: Predicted GTPases [Magnetospirillum magnetotacticum MS-1] Length = 135 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 26/60 (43%), Positives = 35/60 (58%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN L + +A+V D PG TRD D + +I DTAG+ E D Sbjct: 6 VAIVGRPNVGKSTLFNRLVGRKLALVDDRPGVTRDRREGDGSIGDVTFRIIDTAGLEEAD 65 >gi|218282280|ref|ZP_03488579.1| hypothetical protein EUBIFOR_01161 [Eubacterium biforme DSM 3989] gi|218216748|gb|EEC90286.1| hypothetical protein EUBIFOR_01161 [Eubacterium biforme DSM 3989] Length = 319 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/97 (36%), Positives = 52/97 (53%), Gaps = 8/97 (8%) Query: 214 EIIRNGYK--------IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE 265 +II NG K I I+G NAGKS+L NAL K+ +AI++D P TTR+ ++ L E Sbjct: 10 QIILNGGKMKNYKSGFIAIVGRPNAGKSTLLNALLKEKIAIMSDKPNTTRNNISGILTHE 69 Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 DT GI + + + K + +E+ D+I Sbjct: 70 DCQYVFVDTPGIHKPQQQLGRVLNKNAYSAMEDCDVI 106 >gi|85703427|ref|ZP_01034531.1| GTP-binding protein EngA [Roseovarius sp. 217] gi|85672355|gb|EAQ27212.1| GTP-binding protein EngA [Roseovarius sp. 217] Length = 487 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 1/87 (1%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 + + I+G N GKS+LFN L K +A+V + PG TRD+ L + DTAG+ E Sbjct: 3 FSLAIVGRPNVGKSTLFNRLVGKRLALVDNQPGVTRDLREGAARLGDLRFTVIDTAGLEE 62 Query: 280 -TDDIVEKEGIKRTFLEVENADLILLL 305 TD+ ++ K T V+ AD+ L L Sbjct: 63 ATDESLQGRMRKLTERAVDMADVCLFL 89 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ ++G NAGKS+L N + ++ + G TRD +++ +D +G V+I DTAG+R+ Sbjct: 202 QVAVVGRPNAGKSTLINKILGEERLLTGPEAGITRDAISLQIDWDGLPVRIFDTAGMRKK 261 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLL 305 D +EK + V+ A+++++L Sbjct: 262 ARIQDKLEKLSVSDGLRAVKFAEVVVVL 289 >gi|110004318|emb|CAK98656.1| putative gtp-binding protein enga [Spiroplasma citri] Length = 438 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 3/90 (3%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G ++G N GKSSL NA+ ++ IV+ I GTT D + L + DTAGIR Sbjct: 176 GIHFSLIGKPNVGKSSLTNAILGEERVIVSPIAGTTTDSIDTSFKRNNQLYTVIDTAGIR 235 Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLL 305 + +EK + R ++ +DL+LL+ Sbjct: 236 RKGKVYEKLEKYSVLRAVSAIKRSDLVLLI 265 Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust. Identities = 19/35 (54%), Positives = 24/35 (68%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 + I+G N GKS+LFN + K +AIV D PG TRD Sbjct: 7 VAIVGRPNVGKSTLFNRIIKNRLAIVEDTPGVTRD 41 >gi|167041994|gb|ABZ06731.1| putative GTPase of unknown function [uncultured marine microorganism HF4000_141E02] Length = 332 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 60/223 (26%), Positives = 103/223 (46%), Gaps = 37/223 (16%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTIDLDLEGYLVKISDTA 275 R+GY + ++G N GKS+L NAL + V+IVT P TT+ ++L I + L + + DT Sbjct: 52 RSGY-VAVIGRPNVGKSTLVNALVGEKVSIVTSKPQTTQINILGI-VHLPHAQIMLVDTP 109 Query: 276 GIR--ETDDIVEKEGIKRTFLEVENADLILLLKEINS-KKEISFPK------NIDFIFIG 326 G+ + K+ K T + ADL +++ E+N KKE + N + I Sbjct: 110 GLLSGRGKRLSSKQTRKETRNALAMADLAVVVVEVNRWKKEDDYLMERLGEFNFEKILAV 169 Query: 327 TKSDLYSTYTEEYDHLISSFTGEGLEEL----------INKIKSILSNKFKKLPFSIP-- 374 K DL+ ++ D L S T +E+ I +++S++ LPF P Sbjct: 170 NKIDLFKDKSQILDFLAQSSTKGSFKEIVPISALRDKNITRLRSLME---ANLPFQTPQF 226 Query: 375 -----SHKRHLYHLSQTVRYLEMASLNEK-----DCGLDIIAE 407 + + ++ +S+ VR M L ++ C +D + E Sbjct: 227 SKTTVTDQSTVFRISEIVREKLMKCLRDELPYSLTCEVDHMEE 269 >gi|239948355|ref|ZP_04700108.1| GTP-binding protein Era [Rickettsia endosymbiont of Ixodes scapularis] gi|239922631|gb|EER22655.1| GTP-binding protein Era [Rickettsia endosymbiont of Ixodes scapularis] Length = 567 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 50/84 (59%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N+GKS+L N + + ++IVT TTR ++T + L+ V + DT GI E Sbjct: 283 VCIIGRPNSGKSTLLNIIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPK 342 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 +EK ++ + + +ADL+LL+ Sbjct: 343 GTLEKAMVRCAWSSLHSADLVLLI 366 >gi|302546520|ref|ZP_07298862.1| ribosome-associated GTPase EngA [Streptomyces hygroscopicus ATCC 53653] gi|302464138|gb|EFL27231.1| ribosome-associated GTPase EngA [Streptomyces himastatinicus ATCC 53653] Length = 487 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 39/67 (58%) Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 G + +I ++G N GKSSL N +A ++ +V ++ GTTRD + ++L G K Sbjct: 217 FGATVGGPRRIALIGRPNVGKSSLLNKVAGEERVVVNEVAGTTRDPVDELIELGGITWKF 276 Query: 272 SDTAGIR 278 DTAGIR Sbjct: 277 VDTAGIR 283 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/84 (28%), Positives = 43/84 (51%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+L N + + A+V D PG TRD +T + + G K+ DT G + Sbjct: 52 LAVVGRPNVGKSTLVNRVLGRREAVVEDKPGVTRDRVTYEAEWSGRRFKVVDTGGWEQDV 111 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + +E AD ++ + Sbjct: 112 LGIDASVAAQAEFAIEAADAVVFV 135 >gi|242373782|ref|ZP_04819356.1| GTP-binding protein EngA [Staphylococcus epidermidis M23864:W1] gi|242348519|gb|EES40121.1| GTP-binding protein EngA [Staphylococcus epidermidis M23864:W1] Length = 436 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/88 (31%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSL NA+ ++ IV+++ GTTRD + + E + DTAG+R+ Sbjct: 177 RLSIIGRPNVGKSSLVNAILGEERVIVSNVAGTTRDAVDTEYTYEDQDYVLIDTAGMRKK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + EK + R +E ++++L++ Sbjct: 237 GKVYESTEKYSVLRALKAIERSNVVLVV 264 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 45/84 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN + + V+IV D PG TRD + + + I DT GI D Sbjct: 6 VAIVGKPNVGKSTIFNRVVGERVSIVEDTPGVTRDRIYSSGEWLTHEFNIIDTGGIEIGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + + + ++ AD+I+ + Sbjct: 66 APFQTQIRAQAEIAIDEADVIIFM 89 >gi|222055249|ref|YP_002537611.1| small GTP-binding protein [Geobacter sp. FRC-32] gi|254783155|sp|B9M914|DER_GEOSF RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|221564538|gb|ACM20510.1| small GTP-binding protein [Geobacter sp. FRC-32] Length = 441 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 I I+G N GKS+LFN L + A+V D+PG TRD D++ + DT G ET Sbjct: 5 IAIVGRPNVGKSTLFNRLVGRRKAMVDDMPGVTRDRNYADVNRFDVPFILIDTGGFEPET 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 D + ++ +++ L ++ ADLIL + Sbjct: 65 SDRLLQQMREQSQLAMDEADLILFV 89 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 +I ++G N GKS+L N L + + PGTTRD + + + DTAGIR Sbjct: 177 RIAVIGRPNVGKSTLVNRLLGVERVVANPTPGTTRDSIDTYFNCNKKRYLLIDTAGIRRK 236 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305 +T + +EK + + +E AD++L++ Sbjct: 237 GKTTEKIEKYSVVDSLRSIERADVVLIV 264 >gi|330994712|ref|ZP_08318635.1| GTPase Der [Gluconacetobacter sp. SXCC-1] gi|329758353|gb|EGG74874.1| GTPase Der [Gluconacetobacter sp. SXCC-1] Length = 467 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 1/83 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280 +VI G N GKS++FN L + A+V D PG TRD + G ++I DTAG+ E Sbjct: 7 VVIAGRPNVGKSTIFNRLVGRRQALVADTPGVTRDRKEGQATVRGRNIRIIDTAGLEEAA 66 Query: 281 DDIVEKEGIKRTFLEVENADLIL 303 D + + V +ADL+L Sbjct: 67 PDTLYGRMRASSESAVAHADLVL 89 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G NAGKS+L N L ++ I PG TRD + + L + +++ DTAG+R Sbjct: 202 RLAIVGRPNAGKSTLLNRLLGEERMITGPEPGLTRDSIAVMLSDDEGPIQLVDTAGLRRK 261 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLL 305 D+ +EK + + ++ A++++L+ Sbjct: 262 ARIDETLEKMSVSASIEALKMAEVVILV 289 >gi|328955535|ref|YP_004372868.1| iron-only hydrogenase maturation protein HydF [Coriobacterium glomerans PW2] gi|328455859|gb|AEB07053.1| iron-only hydrogenase maturation protein HydF [Coriobacterium glomerans PW2] Length = 422 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 49/193 (25%), Positives = 82/193 (42%), Gaps = 40/193 (20%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276 N I G NAGKSSL NA+ +D+A+V+D PGTT D + ++L V I DT G Sbjct: 12 NRVHIGFFGRRNAGKSSLVNAVTGQDLAVVSDTPGTTTDPVYKSMELLPLGPVVIIDTPG 71 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTK 328 +T ++ E +K+T + D+ +L+ + S E+ + + + I K Sbjct: 72 FDDTGELGELR-VKKTRQVLNKCDIAILVYDAASGVTAADRQLLELIRDRGLPHLIIANK 130 Query: 329 SDLYSTYTEEYDH---------------------LISSFTGEGLEELINKIKSILSNKFK 367 SD + + +S+ +G+G+ EL +I ++ Sbjct: 131 SDRGAAAGDSATAGPDAATASSASAAAPTDNEALCVSALSGQGIHELKERIGALAGTD-- 188 Query: 368 KLPFSIPSHKRHL 380 H+RHL Sbjct: 189 -------RHERHL 194 >gi|302518233|ref|ZP_07270575.1| ribosome-associated GTPase EngA [Streptomyces sp. SPB78] gi|302427128|gb|EFK98943.1| ribosome-associated GTPase EngA [Streptomyces sp. SPB78] Length = 488 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 37/59 (62%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 ++ ++G N GKSSL N LA +D +V + GTTRD + ++L G K DTAGIR+ Sbjct: 227 RVALIGRPNVGKSSLLNKLAGEDRVVVNEQAGTTRDPVDELIELGGVTWKFVDTAGIRK 285 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 4/79 (5%) Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257 F D+ I + G + R + ++G N GKS+L N + + A+V D PG TRD Sbjct: 32 FDVEDVEDAIGEAGHGPLPR----LAVVGRPNVGKSTLVNRIIGRREAVVEDRPGVTRDR 87 Query: 258 LTIDLDLEGYLVKISDTAG 276 +T + + G K+ DT G Sbjct: 88 VTYEAEWAGRRFKLVDTGG 106 >gi|227551166|ref|ZP_03981215.1| GTP-binding protein EngA [Enterococcus faecium TX1330] gi|257896210|ref|ZP_05675863.1| GTP-binding protein engA [Enterococcus faecium Com12] gi|293379548|ref|ZP_06625690.1| ribosome-associated GTPase EngA [Enterococcus faecium PC4.1] gi|293570249|ref|ZP_06681318.1| GTP-binding protein EngA [Enterococcus faecium E980] gi|227179728|gb|EEI60700.1| GTP-binding protein EngA [Enterococcus faecium TX1330] gi|257832775|gb|EEV59196.1| GTP-binding protein engA [Enterococcus faecium Com12] gi|291609656|gb|EFF38917.1| GTP-binding protein EngA [Enterococcus faecium E980] gi|292641857|gb|EFF60025.1| ribosome-associated GTPase EngA [Enterococcus faecium PC4.1] Length = 436 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 50/89 (56%), Gaps = 4/89 (4%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRE 279 K ++G N GKSSL NA+ ++ IV+DI GTTRD + E G + DTAG+R+ Sbjct: 176 KFSLIGRPNVGKSSLINAILGEERVIVSDIEGTTRDAIDTHFVSESGQKFLMIDTAGMRK 235 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLL 305 + EK + R ++ +D++L++ Sbjct: 236 RGKVYENTEKYSVMRAMRAIDRSDIVLMV 264 Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS++FN +A + ++IV D PG TRD + + G + DT GI D Sbjct: 6 IAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYAKGEWLGREFSVIDTGGIDLGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + + + +E AD+I+ + Sbjct: 66 EPFMDQIKHQAEIAIEEADVIICV 89 >gi|154498134|ref|ZP_02036512.1| hypothetical protein BACCAP_02115 [Bacteroides capillosus ATCC 29799] gi|150273124|gb|EDN00281.1| hypothetical protein BACCAP_02115 [Bacteroides capillosus ATCC 29799] Length = 441 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 K+ ++G N GKSSL N + ++ IV+++ GTTRD + + + + DTAG+R Sbjct: 178 KVAVIGKPNVGKSSLINRILGEERVIVSNMAGTTRDAIDSYYENDKGKYILIDTAGMRKK 237 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305 + DD +EK + R + +E D+ L++ Sbjct: 238 SKVDDRIEKFSVLRATMAIERCDVCLIM 265 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 1/90 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS LFN L + ++IV D PG TRD + + + I DT GI T Sbjct: 5 VAIVGRPNVGKSMLFNRLVGQRLSIVEDTPGVTRDRIYAECEWRNRKFDIVDTGGIEPNT 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310 D + ++ + + NAD+ + + +I S Sbjct: 65 DSEILSFMREQAEIAIRNADVTVFVCDIKS 94 >gi|37522779|ref|NP_926156.1| GTP-binding protein EngA [Gloeobacter violaceus PCC 7421] gi|41017005|sp|Q7NGF9|DER_GLOVI RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|35213781|dbj|BAC91151.1| gll3210 [Gloeobacter violaceus PCC 7421] Length = 455 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 33/56 (58%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 + I+G N GKS+L N LA AIV D PG TRD L + + GY ++ DT G+ Sbjct: 6 VAIIGRPNVGKSTLLNRLAGGSEAIVYDQPGVTRDRLYLPAEWCGYRFEVVDTGGL 61 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 5/85 (5%) Query: 221 KIVILGHSNAGKSSLFNAL--AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 ++ I+G N GKSSL NAL + ++V+++ GTTRD + ++ ++ DTAGIR Sbjct: 179 RVSIVGRPNVGKSSLLNALVGGEHPRSMVSEVAGTTRDAIDTLVEHGERRYRLIDTAGIR 238 Query: 279 ETDDI---VEKEGIKRTFLEVENAD 300 + E G+ R + AD Sbjct: 239 RKSRVDYGPEAFGVTRAIRAIRRAD 263 >gi|333028090|ref|ZP_08456154.1| putative GTP-binding protein EngA [Streptomyces sp. Tu6071] gi|332747942|gb|EGJ78383.1| putative GTP-binding protein EngA [Streptomyces sp. Tu6071] Length = 488 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 37/59 (62%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 ++ ++G N GKSSL N LA +D +V + GTTRD + ++L G K DTAGIR+ Sbjct: 227 RVALIGRPNVGKSSLLNKLAGEDRVVVNEQAGTTRDPVDELIELGGVTWKFVDTAGIRK 285 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 4/79 (5%) Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257 F D+ I + G + R + ++G N GKS+L N + + A+V D PG TRD Sbjct: 32 FDVEDVEDAIGEAGHGPLPR----LAVVGRPNVGKSTLVNRIIGRREAVVEDRPGVTRDR 87 Query: 258 LTIDLDLEGYLVKISDTAG 276 +T + + G K+ DT G Sbjct: 88 VTYEAEWAGRRFKLVDTGG 106 >gi|221483987|gb|EEE22291.1| GTP-binding protein enga, putative [Toxoplasma gondii GT1] Length = 1125 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/154 (25%), Positives = 72/154 (46%), Gaps = 22/154 (14%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI---- 277 + I+G N GKS+L N+L +++ +V + PGTT D + +G+ ++ DTAG+ Sbjct: 813 VAIIGRPNVGKSTLVNSLLQEERMVVDNRPGTTTDAVGTLWRFQGHPFRLIDTAGVTRGW 872 Query: 278 --RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTY 335 R TD ++E G++ T + N+ + +L + + ++ P S++ Sbjct: 873 KMRHTDLLLEA-GLQ-TLRNIRNSQVCILCIDASLARDTGQP--------------ISSH 916 Query: 336 TEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369 HL S G L + K + N+ +KL Sbjct: 917 ELALAHLASEKEGRCLAVCVTKWDLVPENEREKL 950 Score = 37.7 bits (86), Expect = 4.0, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 20/105 (19%) Query: 221 KIVILGHSNAGKSSLFN----------------ALAKKDVAIVTDIPGTTRDVLTIDLDL 264 K+V++G N GKSSLFN L + AIV+ GT+RD Sbjct: 252 KVVLVGRPNVGKSSLFNRLISGTRGNSTSSPFAPLKRLQQAIVSPQAGTSRDRKEARAVF 311 Query: 265 EGYLVKISDTAGIRETDDIVEKEGI----KRTFLEVENADLILLL 305 G + + DT G+ +T+ E + K+ +++AD +L L Sbjct: 312 GGLQLLLVDTGGLEDTETTEACELLINMRKQVRFALKDADCVLFL 356 >gi|237836573|ref|XP_002367584.1| small GTP-binding protein, putative [Toxoplasma gondii ME49] gi|211965248|gb|EEB00444.1| small GTP-binding protein, putative [Toxoplasma gondii ME49] Length = 1105 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/154 (25%), Positives = 72/154 (46%), Gaps = 22/154 (14%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI---- 277 + I+G N GKS+L N+L +++ +V + PGTT D + +G+ ++ DTAG+ Sbjct: 793 VAIIGRPNVGKSTLVNSLLQEERMVVDNRPGTTTDAVGTLWRFQGHPFRLIDTAGVTRGW 852 Query: 278 --RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTY 335 R TD ++E G++ T + N+ + +L + + ++ P S++ Sbjct: 853 KMRHTDLLLEA-GLQ-TLRNIRNSQVCILCIDASLARDTGQP--------------ISSH 896 Query: 336 TEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369 HL S G L + K + N+ +KL Sbjct: 897 ELALAHLASEKEGRCLAVCVTKWDLVPENEREKL 930 Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 8/89 (8%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+V++G N GKSSLFN L + IV+ GT+RD G + + DT G+ +T Sbjct: 252 KVVLVGRPNVGKSSLFNRL----ITIVSPQAGTSRDRKEARAVFGGLQLLLVDTGGLEDT 307 Query: 281 DDIVEKEGI----KRTFLEVENADLILLL 305 + E + K+ +++AD +L L Sbjct: 308 ETTEACELLINMRKQVRFALKDADCVLFL 336 >gi|257887716|ref|ZP_05667369.1| GTP-binding protein engA [Enterococcus faecium 1,141,733] gi|257823770|gb|EEV50702.1| GTP-binding protein engA [Enterococcus faecium 1,141,733] Length = 436 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 50/89 (56%), Gaps = 4/89 (4%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRE 279 K ++G N GKSSL NA+ ++ IV+DI GTTRD + E G + DTAG+R+ Sbjct: 176 KFSLIGRPNVGKSSLINAILGEERVIVSDIEGTTRDAIDTHFVSESGQKFLMIDTAGMRK 235 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLL 305 + EK + R ++ +D++L++ Sbjct: 236 RGKVYENTEKYSVMRAMRAIDRSDIVLMV 264 Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS++FN +A + ++IV D PG TRD + + G + DT GI D Sbjct: 6 IAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYAKGEWLGREFSVIDTGGIDLGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + + + +E AD+I+ + Sbjct: 66 EPFMDQIKHQAEIAIEEADVIICV 89 >gi|293568055|ref|ZP_06679393.1| GTP-binding protein EngA [Enterococcus faecium E1071] gi|291589276|gb|EFF21086.1| GTP-binding protein EngA [Enterococcus faecium E1071] Length = 436 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 50/89 (56%), Gaps = 4/89 (4%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRE 279 K ++G N GKSSL NA+ ++ IV+DI GTTRD + E G + DTAG+R+ Sbjct: 176 KFSLIGRPNVGKSSLINAILGEERVIVSDIEGTTRDAIDTHFVSESGQKFLMIDTAGMRK 235 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLL 305 + EK + R ++ +D++L++ Sbjct: 236 RGKVYENTEKYSVMRAMRAIDRSDIVLMV 264 Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS++FN +A + ++IV D PG TRD + + G + DT GI D Sbjct: 6 IAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYAKGEWLGREFSVIDTGGIDLGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + + + +E AD+I+ + Sbjct: 66 EPFMDQIKHQAEIAIEEADVIICV 89 >gi|266624277|ref|ZP_06117212.1| GTP-binding protein EngA [Clostridium hathewayi DSM 13479] gi|288863885|gb|EFC96183.1| GTP-binding protein EngA [Clostridium hathewayi DSM 13479] Length = 189 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 49/88 (55%), Gaps = 1/88 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFN LA ++IV D PG TRD + D + DT GI ++ Sbjct: 6 VAIVGRPNVGKSTLFNVLAGDTISIVKDTPGVTRDRIYADCTWLDKNFTLIDTGGIEPDS 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI 308 DI+ + ++ + + AD+I+ + ++ Sbjct: 66 SDIILSQMREQAEIAIATADVIVFIVDV 93 >gi|300781237|ref|ZP_07091091.1| ribosome-associated GTPase EngA [Corynebacterium genitalium ATCC 33030] gi|300532944|gb|EFK54005.1| ribosome-associated GTPase EngA [Corynebacterium genitalium ATCC 33030] Length = 506 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 49/178 (27%), Positives = 83/178 (46%), Gaps = 31/178 (17%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ ++G N GKSSL N L++ D A+V ++ GTT D + + L+ L + DTAG+R+ Sbjct: 246 RVALVGKPNVGKSSLLNKLSRADRAVVDNVAGTTVDPVDELIQLDQKLWRFIDTAGLRKK 305 Query: 281 DDIVEKEGIK-----RTFLEVENADLILLL----KEINSKKEISFPKNID----FIFIGT 327 + EG + RT ++ A++ ++L +EI + + +D + Sbjct: 306 --VKNAEGHEYYASLRTRGTIDAAEVCVVLIDASQEITEQDQRVISMVLDAGKAMVIAFN 363 Query: 328 KSDLYSTYTEEY---------DHL-------ISSFTGEGLEELINKIKSILSNKFKKL 369 K DL Y DHL IS+ TG GL L ++ + L N K++ Sbjct: 364 KWDLMDEDRRYYFDREFDMQLDHLPWVSKINISAETGRGLHRLEKEMTTALENWDKRI 421 Score = 43.9 bits (102), Expect = 0.046, Method: Compositional matrix adjust. Identities = 24/84 (28%), Positives = 41/84 (48%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+L N + A+V D PG TRD ++ D G + DT G Sbjct: 73 VAIVGRPNVGKSTLVNRFLGRREAVVEDHPGVTRDRVSYLSDWNGQRFWVQDTGGWDPDA 132 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + ++ + +AD+I+++ Sbjct: 133 KGIHASIAHQSEAAMADADIIVMV 156 >gi|257877995|ref|ZP_05657648.1| GTP-binding protein engA [Enterococcus faecium 1,230,933] gi|257881218|ref|ZP_05660871.1| GTP-binding protein engA [Enterococcus faecium 1,231,502] gi|257884882|ref|ZP_05664535.1| GTP-binding protein engA [Enterococcus faecium 1,231,501] gi|257889806|ref|ZP_05669459.1| GTP-binding protein engA [Enterococcus faecium 1,231,410] gi|257892257|ref|ZP_05671910.1| GTP-binding protein engA [Enterococcus faecium 1,231,408] gi|258616518|ref|ZP_05714288.1| GTP-binding protein EngA [Enterococcus faecium DO] gi|260559046|ref|ZP_05831232.1| GTP-binding protein engA [Enterococcus faecium C68] gi|261207580|ref|ZP_05922265.1| GTP-binding protein engA [Enterococcus faecium TC 6] gi|289565092|ref|ZP_06445545.1| ribosome-associated GTPase EngA [Enterococcus faecium D344SRF] gi|293556739|ref|ZP_06675302.1| ribosome-associated GTPase EngA [Enterococcus faecium E1039] gi|293563397|ref|ZP_06677846.1| GTP-binding protein EngA [Enterococcus faecium E1162] gi|294614846|ref|ZP_06694741.1| GTP-binding protein EngA [Enterococcus faecium E1636] gi|294618677|ref|ZP_06698211.1| GTP-binding protein EngA [Enterococcus faecium E1679] gi|294621937|ref|ZP_06701085.1| GTP-binding protein EngA [Enterococcus faecium U0317] gi|314938008|ref|ZP_07845318.1| ribosome-associated GTPase EngA [Enterococcus faecium TX0133a04] gi|314942006|ref|ZP_07848867.1| ribosome-associated GTPase EngA [Enterococcus faecium TX0133C] gi|314948741|ref|ZP_07852113.1| ribosome-associated GTPase EngA [Enterococcus faecium TX0082] gi|314951759|ref|ZP_07854798.1| ribosome-associated GTPase EngA [Enterococcus faecium TX0133A] gi|314991834|ref|ZP_07857292.1| ribosome-associated GTPase EngA [Enterococcus faecium TX0133B] gi|314995875|ref|ZP_07860962.1| ribosome-associated GTPase EngA [Enterococcus faecium TX0133a01] gi|257812223|gb|EEV40981.1| GTP-binding protein engA [Enterococcus faecium 1,230,933] gi|257816876|gb|EEV44204.1| GTP-binding protein engA [Enterococcus faecium 1,231,502] gi|257820720|gb|EEV47868.1| GTP-binding protein engA [Enterococcus faecium 1,231,501] gi|257826166|gb|EEV52792.1| GTP-binding protein engA [Enterococcus faecium 1,231,410] gi|257828636|gb|EEV55243.1| GTP-binding protein engA [Enterococcus faecium 1,231,408] gi|260074803|gb|EEW63119.1| GTP-binding protein engA [Enterococcus faecium C68] gi|260077963|gb|EEW65669.1| GTP-binding protein engA [Enterococcus faecium TC 6] gi|289163099|gb|EFD10946.1| ribosome-associated GTPase EngA [Enterococcus faecium D344SRF] gi|291592308|gb|EFF23922.1| GTP-binding protein EngA [Enterococcus faecium E1636] gi|291595060|gb|EFF26403.1| GTP-binding protein EngA [Enterococcus faecium E1679] gi|291598486|gb|EFF29555.1| GTP-binding protein EngA [Enterococcus faecium U0317] gi|291601071|gb|EFF31360.1| ribosome-associated GTPase EngA [Enterococcus faecium E1039] gi|291604658|gb|EFF34143.1| GTP-binding protein EngA [Enterococcus faecium E1162] gi|313589979|gb|EFR68824.1| ribosome-associated GTPase EngA [Enterococcus faecium TX0133a01] gi|313593645|gb|EFR72490.1| ribosome-associated GTPase EngA [Enterococcus faecium TX0133B] gi|313596038|gb|EFR74883.1| ribosome-associated GTPase EngA [Enterococcus faecium TX0133A] gi|313599258|gb|EFR78103.1| ribosome-associated GTPase EngA [Enterococcus faecium TX0133C] gi|313642583|gb|EFS07163.1| ribosome-associated GTPase EngA [Enterococcus faecium TX0133a04] gi|313644807|gb|EFS09387.1| ribosome-associated GTPase EngA [Enterococcus faecium TX0082] Length = 436 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 50/89 (56%), Gaps = 4/89 (4%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRE 279 K ++G N GKSSL NA+ ++ IV+DI GTTRD + E G + DTAG+R+ Sbjct: 176 KFSLIGRPNVGKSSLINAILGEERVIVSDIEGTTRDAIDTHFVSESGQKFLMIDTAGMRK 235 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLL 305 + EK + R ++ +D++L++ Sbjct: 236 RGKVYENTEKYSVMRAMRAIDRSDIVLMV 264 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS++FN +A + ++IV D PG TRD + + G + DT GI D Sbjct: 6 IAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYAKGEWLGREFSVIDTGGIDLGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + + + +E AD+I+ + Sbjct: 66 EPFMDQIKHQAEIAIEEADVIICV 89 >gi|254478797|ref|ZP_05092164.1| putative GTPase [Carboxydibrachium pacificum DSM 12653] gi|214035252|gb|EEB75959.1| putative GTPase [Carboxydibrachium pacificum DSM 12653] Length = 417 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 52/160 (32%), Positives = 79/160 (49%), Gaps = 36/160 (22%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDTAGIRE 279 I I G NAGKSSL NAL +++AIV+D+ GTT D ++ +++ G +V I DTAG+ + Sbjct: 12 IGIFGRRNAGKSSLINALTNQEIAIVSDVAGTTTDPVSKAMEILPIGPVVLI-DTAGLDD 70 Query: 280 TDDIVEKEGIKRTFLEVENADLILL---------------LKEINSKKEISFPKNIDFIF 324 + + +K+T+ + DL +L LKEI K I + Sbjct: 71 EGPLGQMR-VKKTYEVLNRTDLAILVIDGAEGVTKFEEDILKEIRD-------KGIPVVG 122 Query: 325 IGTKSDL--YS-TYTEEYDHL-------ISSFTGEGLEEL 354 + K DL YS T E++ +S+ EG+EEL Sbjct: 123 VINKKDLSNYSQTQKREWERRLGLRLIEVSAANREGIEEL 162 >gi|189467139|ref|ZP_03015924.1| hypothetical protein BACINT_03523 [Bacteroides intestinalis DSM 17393] gi|189435403|gb|EDV04388.1| hypothetical protein BACINT_03523 [Bacteroides intestinalis DSM 17393] Length = 393 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 74/166 (44%), Gaps = 19/166 (11%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDTA 275 N I + G N+GKSSL NAL +D IV+ PGTT D +T +++ G + I DT Sbjct: 8 NRLHIALFGRRNSGKSSLVNALTGQDTVIVSPTPGTTTDPVTKAMEIHPLGPCLLI-DTP 66 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF-----PKNIDFIFIGTKSD 330 G + ++ E ++ T + D+ LLL E +E + + I I + K+D Sbjct: 67 GFDDEGELGEMR-VECTLKIIGKTDIALLLCETGDAQEQEWLQRLKERGIPVILLLNKAD 125 Query: 331 LYSTYTEEYDH----------LISSFTGEGLEELINKIKSILSNKF 366 TE + +IS+ G G+E + I L F Sbjct: 126 ARPNTTELAEQIKASCGQPPIIISAKDGTGIEAIHRAILEKLPADF 171 >gi|218679763|ref|ZP_03527660.1| GTP-binding protein EngA [Rhizobium etli CIAT 894] Length = 437 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 38/66 (57%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G NAGKS+L N +D + G TRD ++++ D G +K+ DTAG+R Sbjct: 169 RVAIVGRPNAGKSTLINRFLGEDRLLTGPEAGITRDSISVEWDWRGRTIKMFDTAGMRRK 228 Query: 281 DDIVEK 286 + EK Sbjct: 229 ARVTEK 234 >gi|15603995|ref|NP_220510.1| GTP-binding protein Era [Rickettsia prowazekii str. Madrid E] gi|6225298|sp|Q9ZE30|ERA_RICPR RecName: Full=GTPase Era gi|3860686|emb|CAA14587.1| GTP-BINDING PROTEIN ERA (era) [Rickettsia prowazekii] gi|292571711|gb|ADE29626.1| GTP-binding protein Era [Rickettsia prowazekii Rp22] Length = 295 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 51/88 (57%) Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 I+ + I+G N+GKS+L N + + ++IVT TTR ++T + L+ + + DT Sbjct: 5 IQKTISVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIVTLKDTQIILYDTP 64 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLIL 303 GI E ++EK ++ + V +ADL+L Sbjct: 65 GIFEPKGMLEKAMVRCAWSSVYSADLVL 92 >gi|309810373|ref|ZP_07704208.1| ribosome biogenesis GTPase Der [Dermacoccus sp. Ellin185] gi|308435686|gb|EFP59483.1| ribosome biogenesis GTPase Der [Dermacoccus sp. Ellin185] Length = 506 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 1/67 (1%) Query: 213 GEIIRNG-YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 G R G ++ +LG N GKSSL N LA ++ +V ++ GTTRD + ++L G + Sbjct: 237 GAYPRGGPRRVALLGRPNVGKSSLLNKLAGEERVVVDNVAGTTRDPVDEYIELGGKTWRF 296 Query: 272 SDTAGIR 278 DTAGIR Sbjct: 297 VDTAGIR 303 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 31/55 (56%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 + ++G N GKS+L N + + A+V D+PG TRD + D + G + DT G Sbjct: 72 VAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVAYDAEWVGRRFTLVDTGG 126 >gi|139439609|ref|ZP_01773022.1| Hypothetical protein COLAER_02049 [Collinsella aerofaciens ATCC 25986] gi|133774950|gb|EBA38770.1| Hypothetical protein COLAER_02049 [Collinsella aerofaciens ATCC 25986] Length = 356 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 3/98 (3%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R+G+ + ++G NAGKS+L NA K VAI + + TTR + ++ GY + DT G Sbjct: 64 RSGF-VALVGRPNAGKSTLLNACYGKKVAITSPVAQTTRRRMRAVVNRPGYQLVFVDTPG 122 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314 I + D + E K E+ + D++ L I++ K I Sbjct: 123 IHKPKDGLGSELNKSALFELNDVDVVAFL--IDATKPI 158 >gi|308809447|ref|XP_003082033.1| GTP-binding protein-like (ISS) [Ostreococcus tauri] gi|116060500|emb|CAL55836.1| GTP-binding protein-like (ISS) [Ostreococcus tauri] Length = 500 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/113 (34%), Positives = 55/113 (48%), Gaps = 17/113 (15%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE----GYLVKISDTAGI 277 + I+G N GKSSL N LA + +IV+D GTTRD +ID +E G + DTAGI Sbjct: 229 LAIIGRPNVGKSSLLNGLAGEMRSIVSDFSGTTRD--SIDTMVEDKYTGKKYTLIDTAGI 286 Query: 278 RET------DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF 324 R D EK + R ++ AD++ L+ + P DF+ Sbjct: 287 RRRTQVKSGSDGAEKLSVGRALQAMKRADVVCLVIDATQG-----PSQQDFVL 334 Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust. Identities = 18/38 (47%), Positives = 24/38 (63%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 ++ ++G N GKS+LFN L AIV D PG TRD + Sbjct: 31 RVAVVGRPNVGKSALFNRLTGTKRAIVYDEPGVTRDRM 68 >gi|257898848|ref|ZP_05678501.1| GTP-binding protein engA [Enterococcus faecium Com15] gi|257836760|gb|EEV61834.1| GTP-binding protein engA [Enterococcus faecium Com15] Length = 436 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 50/89 (56%), Gaps = 4/89 (4%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRE 279 K ++G N GKSSL NA+ ++ IV+DI GTTRD + E G + DTAG+R+ Sbjct: 176 KFSLIGRPNVGKSSLINAILGEERVIVSDIEGTTRDAIDTHFVSENGQKFLMIDTAGMRK 235 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLL 305 + EK + R ++ +D++L++ Sbjct: 236 RGKVYENTEKYSVMRAMRAIDRSDIVLMV 264 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS++FN +A + ++IV D PG TRD + + G + DT GI D Sbjct: 6 IAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYAKGEWLGREFSVIDTGGIDLGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + + + +E AD+I+ + Sbjct: 66 EPFMDQIKHQAEIAIEEADVIICV 89 >gi|218508068|ref|ZP_03505946.1| GTP-binding protein EngA [Rhizobium etli Brasil 5] Length = 322 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 38/66 (57%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G NAGKS+L N +D + G TRD ++++ D G +K+ DTAG+R Sbjct: 53 RVAIVGRPNAGKSTLINRFLGEDRLLTGPEAGITRDSISVEWDWRGRTIKMFDTAGMRRK 112 Query: 281 DDIVEK 286 + EK Sbjct: 113 ARVTEK 118 >gi|237843971|ref|XP_002371283.1| GTP-binding protein EngA , putative [Toxoplasma gondii ME49] gi|211968947|gb|EEB04143.1| GTP-binding protein EngA , putative [Toxoplasma gondii ME49] gi|221483760|gb|EEE22072.1| hypothetical protein TGGT1_123310 [Toxoplasma gondii GT1] Length = 1146 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 2/92 (2%) Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 L + R + I+G N GKS L N L ++V+ GTTRD + + +G L ++ Sbjct: 862 LPTLAREDVNVAIVGRPNVGKSQLLNRLLGVSRSLVSPQAGTTRDAVDELVQRDGRLYRL 921 Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303 DTAGIR + ++G++ F+ V+ A+ L Sbjct: 922 VDTAGIRRARVVKAQKGVE--FVMVKRAERAL 951 Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 30/60 (50%), Gaps = 4/60 (6%) Query: 222 IVILGHSNAGKSSLFNALAKKD----VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 + +LG N GKSSLFN L K+ AIV D GTTRD G + DT G+ Sbjct: 652 VCLLGRPNVGKSSLFNTLKDKEDTAADAIVRDEDGTTRDRHYAFSVWRGRPFIVVDTGGL 711 >gi|332637852|ref|ZP_08416715.1| GTP-binding protein Der [Weissella cibaria KACC 11862] Length = 436 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/88 (29%), Positives = 50/88 (56%), Gaps = 1/88 (1%) Query: 219 GYKIV-ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 G+ +V ++G N GKS++FN +A ++IV D PG TRD + + ++ DT GI Sbjct: 2 GFPVVAVVGRPNVGKSTIFNRIAGDRISIVEDTPGVTRDRIYTRAEWLTREFRLIDTGGI 61 Query: 278 RETDDIVEKEGIKRTFLEVENADLILLL 305 D+ + +++ + ++ AD+I+ + Sbjct: 62 DMADEPFMTQIVQQAEIAIDEADVIVFM 89 Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 49/85 (57%), Gaps = 4/85 (4%) Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRETDDI 283 +G N GKSSL NA+ ++ IV+DI GTTRD + +G + DTAGIR+ + Sbjct: 180 IGRPNVGKSSLVNAILGEERVIVSDISGTTRDAIDTRFTSADGDEFVMVDTAGIRKRGKV 239 Query: 284 ---VEKEGIKRTFLEVENADLILLL 305 EK + R +++++++L++ Sbjct: 240 YESTEKYSVMRAMRAIDDSNVVLMV 264 >gi|313114942|ref|ZP_07800438.1| ribosome-associated GTPase EngA [Faecalibacterium cf. prausnitzii KLE1255] gi|310622735|gb|EFQ06194.1| ribosome-associated GTPase EngA [Faecalibacterium cf. prausnitzii KLE1255] Length = 447 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 9/92 (9%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+LFN L + +AIV D PG TRD + + + G+ + DT GI Sbjct: 6 VAVVGRPNVGKSTLFNKLCGQRLAIVEDTPGITRDRIFANCEWNGHDFLLVDTGGIEPK- 64 Query: 282 DIVEKEGI-----KRTFLEVENADLILLLKEI 308 EGI ++ + ++ AD I+++ ++ Sbjct: 65 ---ATEGILAHMREQAQIAIDTADCIIMVVDV 93 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 3/87 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKSSL N + ++ IV + GTTRD + +D +DTAG+R+ Sbjct: 179 VAIIGRPNVGKSSLTNRILGENRMIVANEAGTTRDAIDTPVDNAYGKFIFTDTAGLRKRS 238 Query: 282 DI---VEKEGIKRTFLEVENADLILLL 305 +I +E+ + R VE + + L+L Sbjct: 239 NITDGLERYMVVRALAAVERSRVALIL 265 >gi|78357319|ref|YP_388768.1| small GTP-binding protein domain-containing protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219724|gb|ABB39073.1| iron-only hydrogenase maturation protein HydF [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 400 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 81/169 (47%), Gaps = 18/169 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280 I ++G NAGKSSL NALA + +AIV+D+PGTT D + +L V DTAG+ ++ Sbjct: 13 ITLVGRRNAGKSSLINALAGQQIAIVSDVPGTTTDPVAKPYELLPLGPVTFYDTAGLDDS 72 Query: 281 DDIVEKEGIKRTFLEVENADLILLL-----KEINSKKEIS--FPKNIDFIFIGTKSDLYS 333 ++ E ++ + D+ LL+ E K+ ++ I + + K D+ Sbjct: 73 GELGEMR-VRSARKVLARTDVALLVVSEAGMEEAEKRMLADLQAMEISALVVFNKQDIAD 131 Query: 334 TYTEE--------YDHL-ISSFTGEGLEELINKIKSILSNKFKKLPFSI 373 E+ H+ +SS +G+ EL + I ++ + K P + Sbjct: 132 VRPEDVRFCHEAGVRHVQVSSVAQKGISELKSAIVEMVPEELKADPVLV 180 >gi|169832185|ref|YP_001718167.1| GTP-binding protein Era [Candidatus Desulforudis audaxviator MP104C] gi|169639029|gb|ACA60535.1| GTP-binding protein Era [Candidatus Desulforudis audaxviator MP104C] Length = 308 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 36/108 (33%), Positives = 57/108 (52%), Gaps = 5/108 (4%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R+G+ + I+G N GKS+L N+L + VAI++D P TTR + L + V DT G Sbjct: 15 RSGF-VTIIGRPNVGKSTLLNSLVGRKVAIISDKPQTTRHRIRAVLTRDDAQVVFVDTPG 73 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF 324 I + + + + +++ DLIL L E + + S P + DFI Sbjct: 74 IHKPKHRLGRMMVDTALKTLQDVDLILFLIEAHRE---SGPGD-DFIL 117 >gi|165933610|ref|YP_001650399.1| GTP-binding protein Der [Rickettsia rickettsii str. Iowa] gi|189037156|sp|B0BUT3|DER_RICRO RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|165908697|gb|ABY72993.1| GTP-binding protein [Rickettsia rickettsii str. Iowa] Length = 447 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 49/89 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L+ + AIV D+PG TRD D + + + DT G+ E Sbjct: 6 ITLVGRPNVGKSTLFNRLSIRKKAIVHDLPGVTRDRKYTDGKIGSFEFLLIDTPGLDEHP 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310 + + + I++T + ADLI + + S Sbjct: 66 NSMGERLIEQTTKAILEADLICFMVDARS 94 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 36/65 (55%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +IV+ G NAGKS+ NAL + + G TR+ + ID + +K+ DTAG+R+ Sbjct: 181 QIVVSGRPNAGKSTFINALINDERLLTGPEAGITRESIEIDWQYKNNHIKLIDTAGLRKK 240 Query: 281 DDIVE 285 I E Sbjct: 241 STITE 245 >gi|32491325|ref|NP_871579.1| hypothetical protein WGLp576 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25166532|dbj|BAC24722.1| b2511 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 456 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 36/108 (33%), Positives = 59/108 (54%), Gaps = 3/108 (2%) Query: 201 NDISSHISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259 N +SS I L +I + Y KI I+G N+GKS+L N + +++ + V++ PGTT+DVL Sbjct: 174 NKVSSAIKNLTLNKIEMDKYPKIAIIGRPNSGKSTLMNCILRQNRSTVSNSPGTTKDVLY 233 Query: 260 IDLDLEGYLVKISDTAGIRETDDIVE--KEGIKRTFLEVENADLILLL 305 + DTAG+ + + V K IK T ++ D+ +L+ Sbjct: 234 SLYSNKEKTYLFIDTAGLVKKKNFVHINKSVIKNTLNVIKKIDVSILV 281 Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust. Identities = 18/35 (51%), Positives = 24/35 (68%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 + I+G N+GKS+LFN L KK A+V+ PG T D Sbjct: 5 VSIIGKQNSGKSTLFNKLTKKRRALVSKDPGFTSD 39 >gi|223558010|gb|ACM91016.1| putative GTP-binding protein [uncultured bacterium URE4] Length = 361 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 32/89 (35%), Positives = 55/89 (61%), Gaps = 4/89 (4%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI-SDTAGIR 278 +I G +N+GKS+L NALA ++V++V+D+PGTT D + ++L G I DTAG Sbjct: 4 MQIAFFGATNSGKSTLVNALAGQEVSLVSDLPGTTTDPVRKAIELPGLGPCILVDTAGYG 63 Query: 279 ETDDI-VEKEGIKRTFLEVENADLILLLK 306 + + E+E +R+ ++ D+ +LL+ Sbjct: 64 DPGALGAERE--RRSRATIDATDIAVLLR 90 >gi|229587033|ref|YP_002845534.1| GTP-binding protein EngA [Rickettsia africae ESF-5] gi|259645884|sp|C3PPD1|DER_RICAE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|228022083|gb|ACP53791.1| GTP-binding protein [Rickettsia africae ESF-5] Length = 447 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L+ + AIV D+PG TRD D + + + DT G+ E Sbjct: 6 ITLVGRPNVGKSTLFNRLSIRKKAIVHDLPGVTRDRKYTDGKIGSFEFLLIDTPGLDEHP 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + + I++T + ADLI + Sbjct: 66 NSMGERLIEQTTKAILEADLICFM 89 Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust. Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +IV+ G NAGKS+ NAL + + G TR+ + ID + +K+ DTAG+R+ Sbjct: 181 QIVVSGRPNAGKSTFINALINDERLLTGPEAGITRESIEIDWQYKNNHIKLIDTAGLRKK 240 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 I +EK T ++ A+ ++L+ Sbjct: 241 STITKSLEKLSASDTINSIKFANTVILM 268 >gi|117919157|ref|YP_868349.1| small GTP-binding protein [Shewanella sp. ANA-3] gi|117611489|gb|ABK46943.1| small GTP-binding protein [Shewanella sp. ANA-3] Length = 412 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 45/173 (26%), Positives = 81/173 (46%), Gaps = 26/173 (15%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIR 278 Y I ++G NAGKSSL N +A + ++IV+DI GTT D + +L+ V DTAGI Sbjct: 22 YHIALVGRRNAGKSSLLNMIAGQQISIVSDIKGTTTDAVAKAYELQPLGPVTFYDTAGI- 80 Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKE-----------INSKKEISFPKNIDFIFIGT 327 + D + +K T + +D+ LL+ + +N +++ P + + Sbjct: 81 DDDGELGAMRVKATRKVLFRSDMALLVVDEQGLYPSDIALVNEIQQMRMP----ILVVFN 136 Query: 328 KSDLYSTYTEEYDH---------LISSFTGEGLEELINKIKSILSNKFKKLPF 371 K+D+ + E ++S+ TG + L +I + ++K+ P Sbjct: 137 KADICTPKAENIAFCQQQSLPFIVVSATTGLATKMLKQQIIDLAPAEYKQEPL 189 >gi|284924491|emb|CBG37625.1| putative ATP/GTP-binding protein [Escherichia coli 042] Length = 290 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 40/108 (37%), Positives = 57/108 (52%), Gaps = 4/108 (3%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L +S HI Q L ++ + I I+G S AGKSSL NAL + +V V+D+ TR+V Sbjct: 17 LPYSLSRHI-QEHLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 75 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305 L G+ + I+D G+ E+ D E E + R L DL+L L Sbjct: 76 RFRLSGHGHSMIITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 121 >gi|323704187|ref|ZP_08115766.1| GTP-binding protein Era [Thermoanaerobacterium xylanolyticum LX-11] gi|323536253|gb|EGB26025.1| GTP-binding protein Era [Thermoanaerobacterium xylanolyticum LX-11] Length = 299 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 34/87 (39%), Positives = 49/87 (56%), Gaps = 6/87 (6%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 ++G +N GKS+L NAL + VAI +D P TTR+ + L E Y V DT GI + Sbjct: 10 LIGRTNVGKSTLLNALLNEKVAITSDKPQTTRNTIQGILTGEDYQVIFIDTPGIHKPKHK 69 Query: 284 VEK---EGIKRTFLEVENADLILLLKE 307 + + E +K+T EV DLI+ + E Sbjct: 70 LSEFMIESVKKTLAEV---DLIIYMVE 93 >gi|317122971|ref|YP_004102974.1| GTP-binding protein Era [Thermaerobacter marianensis DSM 12885] gi|315592951|gb|ADU52247.1| GTP-binding protein Era [Thermaerobacter marianensis DSM 12885] Length = 391 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 45/182 (24%), Positives = 81/182 (44%), Gaps = 29/182 (15%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273 E R+G+ + ++G N GKS+L N L + +AI++D P TTR + L+ G + D Sbjct: 96 EGFRSGF-VALIGRPNVGKSTLLNQLIGRKIAIMSDKPQTTRTRILGVLNRPGAQLIFVD 154 Query: 274 TAGIRETDDIVEKEGI---KRTFLEVENADLILLLKEINSKK-------------EISFP 317 T GI + ++ + + +RT EVE ++ L E ++ E+ P Sbjct: 155 TPGIHKPQHLLGEHMVRVARRTLQEVE---VVCWLVEAPDREPGPGDRYIAEQLVEVKTP 211 Query: 318 K-----NIDFIFIGTKSDLYSTYTE----EYDHLISSFTGEGLEELINKIKSILSNKFKK 368 K ID + G + + + H +S+ G G+ EL+ +++ L + Sbjct: 212 KILVVNKIDQVAPGEVPAIAQRFAQLGQFAAVHPVSALHGVGVPELVEELEGRLPQGPRF 271 Query: 369 LP 370 P Sbjct: 272 FP 273 >gi|221504233|gb|EEE29908.1| GTPase mss1/trme, putative [Toxoplasma gondii VEG] Length = 1151 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 2/92 (2%) Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 L + R + I+G N GKS L N L ++V+ GTTRD + + +G L ++ Sbjct: 867 LPTLAREDVNVAIVGRPNVGKSQLLNRLLGVSRSLVSPQAGTTRDAVDELVQRDGRLYRL 926 Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303 DTAGIR + ++G++ F+ V+ A+ L Sbjct: 927 VDTAGIRRARVVKAQKGVE--FVMVKRAERAL 956 Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 30/60 (50%), Gaps = 4/60 (6%) Query: 222 IVILGHSNAGKSSLFNALAKKD----VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 + +LG N GKSSLFN L K+ AIV D GTTRD G + DT G+ Sbjct: 652 VCLLGRPNVGKSSLFNTLKDKEDAAADAIVRDEDGTTRDRHYAFSVWRGRPFIVVDTGGL 711 >gi|317506861|ref|ZP_07964633.1| ribosome-associated GTPase EngA [Segniliparus rugosus ATCC BAA-974] gi|316254789|gb|EFV14087.1| ribosome-associated GTPase EngA [Segniliparus rugosus ATCC BAA-974] Length = 449 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 43/84 (51%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+L N + A+V D+PG TRD ++ D + G + DT G Sbjct: 13 VAVVGRPNVGKSTLVNRFVGRRAAVVEDVPGVTRDRVSYDAEWGGRSFLVQDTGGWEPDA 72 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + ++ L + AD+ILL+ Sbjct: 73 TGIGLSIAQQAELAMATADVILLV 96 Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 35/58 (60%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 ++ ++G N GKSSL N LA + ++V ++ GTT D + + L+ + DTAG+R Sbjct: 185 RVALVGRPNVGKSSLINKLAGETRSVVNEMAGTTVDPVDSIITLDDEEWQFVDTAGLR 242 >gi|291456800|ref|ZP_06596190.1| ribosome-associated GTPase EngA [Bifidobacterium breve DSM 20213] gi|291382077|gb|EFE89595.1| ribosome-associated GTPase EngA [Bifidobacterium breve DSM 20213] Length = 708 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 40/112 (35%), Positives = 61/112 (54%), Gaps = 15/112 (13%) Query: 207 ISQGKLGEIIR-NGY-------KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 ++ GKL E + +GY ++ ++G N GKSSL N LA + A+V D+ GTTRD + Sbjct: 427 VALGKLKEAEKASGYLTPSGLRRVALVGRPNVGKSSLLNQLAHSERAVVNDLAGTTRDPV 486 Query: 259 --TIDLDLEGYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLL 305 +D+D E +L DTAGI+ + E RT +E ++L L+L Sbjct: 487 DEIVDIDGEDWL--FIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALIL 536 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 43/84 (51%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKSSL N + + A+V D PG TRD ++ D + G K+ DT G Sbjct: 275 LAIVGRPNVGKSSLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADV 334 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + +E + + V AD ++ + Sbjct: 335 EGIESAIASQAQVAVTLADAVVFV 358 >gi|217074544|gb|ACJ85632.1| unknown [Medicago truncatula] Length = 319 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 33/93 (35%), Positives = 48/93 (51%), Gaps = 7/93 (7%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAGIRET 280 I I+G N GKSS+ NAL +D IV+ I GTTRD + + +G + DTAGIR+ Sbjct: 54 ISIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPDGQKFHLIDTAGIRKR 113 Query: 281 DDI------VEKEGIKRTFLEVENADLILLLKE 307 + E + R F + +D+ L+ E Sbjct: 114 TTVASAGSTTEALSVNRAFRAIRRSDVGALVIE 146 >gi|225867922|ref|YP_002743870.1| GTP-binding protein EngA [Streptococcus equi subsp. zooepidemicus] gi|225701198|emb|CAW98121.1| GTP-binding protein EngA [Streptococcus equi subsp. zooepidemicus] Length = 446 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 42/157 (26%), Positives = 75/157 (47%), Gaps = 33/157 (21%) Query: 214 EIIRNG--YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVK 270 EI+ N + ++G N GKSSL NA+ ++ I + + GTTRD + D G Sbjct: 177 EIVENDDVIRFSLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAIDTSFTDESGQAYT 236 Query: 271 ISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGT 327 + DTAG+R++ + EK + R ++ +D++L++ IN+++ I Sbjct: 237 MIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDIVLMV--INAEEGI------------- 281 Query: 328 KSDLYSTYTEEYDHLISSF---TGEGLEELINKIKSI 361 +YD I+ F G+G+ ++NK +I Sbjct: 282 ---------RDYDKRIAGFAHEAGKGMIIVVNKWDTI 309 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN +A + ++IV D+ G TRD + + + DT GI + D Sbjct: 16 VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTTGEWLNRQFSLIDTGGIDDVD 75 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + + ++ AD+I+ + Sbjct: 76 APFMEQIKHQAHIAMDEADVIVFV 99 >gi|34581350|ref|ZP_00142830.1| conserved GTP-binding protein [Rickettsia sibirica 246] gi|28262735|gb|EAA26239.1| conserved GTP-binding protein [Rickettsia sibirica 246] Length = 447 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L+ + AIV D+PG TRD D + + + DT G+ E Sbjct: 6 ITLVGRPNVGKSTLFNRLSIRKKAIVHDLPGVTRDRKYTDGKIGSFEFLLIDTPGLDEHP 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + + I++T + ADLI + Sbjct: 66 NSMGERLIEQTTKAILEADLICFM 89 Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 36/65 (55%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +IV+ G NAGKS+ NAL + + G TR+ + ID + +K+ DTAG+R+ Sbjct: 181 QIVVSGRPNAGKSTFINALINDERLLTGPEAGITRESIEIDWQYKNNHIKLIDTAGLRKK 240 Query: 281 DDIVE 285 I E Sbjct: 241 STITE 245 >gi|317969119|ref|ZP_07970509.1| GTP-binding protein Era-like protein [Synechococcus sp. CB0205] Length = 327 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 43/182 (23%), Positives = 81/182 (44%), Gaps = 22/182 (12%) Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262 ++ S G+ E R+G+ + ++G N GKS+L N L + VAI + + TTR+ L L Sbjct: 21 MAGGFSLGQSPEGFRSGF-VALVGRPNVGKSTLMNQLVGEKVAITSPVAQTTRNRLRAIL 79 Query: 263 DLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------------INS 310 + + DT GI + ++ + ++ + D +LLL + + Sbjct: 80 TTPTAQLVLVDTPGIHKPHHLLGERLVQTARGAIGEVDQVLLLVDGSQAAGRGDGFIVEL 139 Query: 311 KKEISFPKNI-----DFIFIGTKSDLYSTYTEEYD----HLISSFTGEGLEELINKIKSI 361 + I P + D + ++L ++Y E H +S+ GEG E L++ + + Sbjct: 140 LERIKVPVQVALNKSDLVDPAQAAELEASYRELVPGWPLHPVSALNGEGTEALVSALAAE 199 Query: 362 LS 363 L Sbjct: 200 LP 201 >gi|227535137|ref|ZP_03965186.1| GTP-binding protein engA [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187182|gb|EEI67249.1| GTP-binding protein engA [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 445 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 32/97 (32%), Positives = 53/97 (54%), Gaps = 5/97 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K ++G N GKSSL NA+ ++ IV+ I GTTRD + + + DTAGIR+ Sbjct: 186 KFSLIGRPNVGKSSLVNAILGENRVIVSPIEGTTRDAIDTKFEAVDETFTMIDTAGIRKR 245 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEI 314 + EK + R ++ +D++L + IN+++ I Sbjct: 246 GKVYENTEKYAVMRALRAIDRSDVVLFV--INAEEGI 280 Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 48/89 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN + + V+IV D PG TRD + + G + DT GI D Sbjct: 16 LAIVGRPNVGKSTIFNRILGERVSIVEDTPGVTRDRIYGTSEWLGKEFAVIDTGGIDLGD 75 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310 + + + + ++ AD+IL L +I S Sbjct: 76 EPFLAQIKDQAEIAIDEADVILFLADIES 104 >gi|121535380|ref|ZP_01667192.1| small GTP-binding protein [Thermosinus carboxydivorans Nor1] gi|121306072|gb|EAX47002.1| small GTP-binding protein [Thermosinus carboxydivorans Nor1] Length = 408 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 29/57 (50%), Positives = 38/57 (66%), Gaps = 1/57 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAGI 277 I I G NAGKSSL NAL +++A+V+D+PGTT D + ++ L V I DTAGI Sbjct: 12 IAIFGRRNAGKSSLINALTNQNIALVSDVPGTTTDPVYKAMEILPIGPVVIIDTAGI 68 >gi|157964826|ref|YP_001499650.1| GTP-binding protein EngA [Rickettsia massiliae MTU5] gi|157844602|gb|ABV85103.1| GTP-binding protein [Rickettsia massiliae MTU5] Length = 483 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L+ + AIV D+PG TRD D + + + DT G+ E Sbjct: 42 ITLVGRPNVGKSTLFNRLSIRKKAIVHDLPGVTRDRKYTDGKIGSFEFLLIDTPGLDENP 101 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + + +++T + ADLI + Sbjct: 102 NSMGERLMEQTTKAILEADLICFM 125 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 36/65 (55%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +IV+ G NAGKS+ NAL + + G TR+ + ID + +K+ DTAG+R+ Sbjct: 217 QIVVSGRPNAGKSTFINALINDERLLTGPEAGITRESIEIDWQYKNNHIKLIDTAGLRKK 276 Query: 281 DDIVE 285 I E Sbjct: 277 STITE 281 >gi|317490504|ref|ZP_07948984.1| GTP-binding protein HflX [Eggerthella sp. 1_3_56FAA] gi|316910397|gb|EFV32026.1| GTP-binding protein HflX [Eggerthella sp. 1_3_56FAA] Length = 436 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 47/186 (25%), Positives = 83/186 (44%), Gaps = 21/186 (11%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIR 278 +K+ + G++NAGKSSL N L DV + D T D T +L EG + ++DT G Sbjct: 217 FKVALAGYTNAGKSSLLNRLTNADV-LAYDKLFATLDSTTRKFELPEGREITVTDTVGFI 275 Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEIS---------FPKNIDFIFIG 326 + E K T E+ ADL+L + + +S + +I+ +++ + + Sbjct: 276 QKLPTTLIEAFKSTLDEITGADLVLHVVDASSDEYEAQIAAVEDVLGQIHAQDLSRVLVF 335 Query: 327 TKSDLYS-------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379 K DL +S+ GEG+ EL+ + + S + + L IP ++ Sbjct: 336 NKCDLLGEERLGALKARHPQAQFVSAAMGEGVGELVEHVARVASAQDEHLDVLIPYNRGD 395 Query: 380 LYHLSQ 385 L ++ Sbjct: 396 LVSVAH 401 >gi|195978761|ref|YP_002124005.1| GTP-binding protein EngA [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195975466|gb|ACG62992.1| GTP-binding protein EngA [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 446 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 42/157 (26%), Positives = 75/157 (47%), Gaps = 33/157 (21%) Query: 214 EIIRNG--YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVK 270 EI+ N + ++G N GKSSL NA+ ++ I + + GTTRD + D G Sbjct: 177 EIVENDDVIRFSLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAIDTSFTDESGQAYT 236 Query: 271 ISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGT 327 + DTAG+R++ + EK + R ++ +D++L++ IN+++ I Sbjct: 237 MIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDIVLMV--INAEEGI------------- 281 Query: 328 KSDLYSTYTEEYDHLISSF---TGEGLEELINKIKSI 361 +YD I+ F G+G+ ++NK +I Sbjct: 282 ---------RDYDKRIAGFAHEAGKGMIIVVNKWDTI 309 Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN +A + ++IV D+ G TRD + + + DT GI + D Sbjct: 16 VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTTGEWLNRQFSLIDTGGIDDVD 75 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + + ++ AD+I+ + Sbjct: 76 APFMEQIKHQAHIAMDEADVIVFV 99 >gi|260433297|ref|ZP_05787268.1| ribosome-associated GTPase EngA [Silicibacter lacuscaerulensis ITI-1157] gi|260417125|gb|EEX10384.1| ribosome-associated GTPase EngA [Silicibacter lacuscaerulensis ITI-1157] Length = 484 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280 + I+G N GKS+LFN L K +A+V D PG TRD+ + L + DTAG+ + T Sbjct: 5 LAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGEGRLGDLRFTVIDTAGLEDAT 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 DD ++ + T V+ AD+ L + Sbjct: 65 DDSLQGRMRRLTERAVDMADVCLFM 89 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 ++ ++G NAGKS+L N + +D + G TRD +++ +D G ++I DTAG+R Sbjct: 201 QVAVVGRPNAGKSTLINKILGEDRLLTGPEAGITRDAISLRIDWNGTPMRIFDTAGMRKK 260 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305 + D +EK + V+ A+++++L Sbjct: 261 AKVQDKLEKLSVSDGLRAVKFAEVVVVL 288 >gi|311899123|dbj|BAJ31531.1| putative GTP-binding protein EngA [Kitasatospora setae KM-6054] Length = 484 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 37/58 (63%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 ++ ++G N GKSSL N +A +D +V ++ GTTRD + ++L G K DTAGIR Sbjct: 223 RVALIGRPNVGKSSLLNKVAGEDRVVVNELAGTTRDPVDELIELGGKTWKFIDTAGIR 280 Score = 43.5 bits (101), Expect = 0.059, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 31/55 (56%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 + I+G N GKS+L N + + A+V D PG TRD ++ + G K+ DT G Sbjct: 47 LAIVGRPNVGKSTLVNRIIGRREAVVEDRPGVTRDRVSYEAMWAGRRFKVLDTGG 101 >gi|290968112|ref|ZP_06559657.1| small GTP-binding protein domain protein [Megasphaera genomosp. type_1 str. 28L] gi|290781787|gb|EFD94370.1| small GTP-binding protein domain protein [Megasphaera genomosp. type_1 str. 28L] Length = 400 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/144 (27%), Positives = 74/144 (51%), Gaps = 12/144 (8%) Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIV 284 G+ NAGKSSL NA+ +D++IV+D GTT D ++ ++L V I DT G+ +T + Sbjct: 18 GYRNAGKSSLVNAVTGQDLSIVSDTEGTTTDPVSKAMELLPLGPVLIIDTPGLDDTGTLG 77 Query: 285 EKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYT 336 EK + RT + D+ +L+ + + ++ K + ++ + K D+ Sbjct: 78 EKR-VARTRRVLNKTDIAVLVADAAAGLRPLDMEVLQLIQQKGLPYLIVYNKRDMLENVP 136 Query: 337 E--EYDHLISSFTGEGLEELINKI 358 E++ +S+ +G+ EL ++ Sbjct: 137 PAGEHEMYVSALKKQGIYELKERL 160 >gi|56697187|ref|YP_167551.1| GTP-binding protein EngA [Ruegeria pomeroyi DSS-3] gi|81676219|sp|Q5LR04|DER_SILPO RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|56678924|gb|AAV95590.1| GTP-binding protein EngA [Ruegeria pomeroyi DSS-3] Length = 487 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + I+G N GKS+LFN L K +A+V D PG TRD+ L + DTAG+ T Sbjct: 5 LAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGQARLGDLRFTVIDTAGLETAT 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 DD ++ + T V+ AD+ L + Sbjct: 65 DDSLQGRMRRLTERAVDMADICLFM 89 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 39/66 (59%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ ++G NAGKS+L N + +D + G TRD +++ +D ++I DTAG+R+ Sbjct: 204 QVAVVGRPNAGKSTLINRILGEDRLLTGPEAGITRDAISLQIDWNDTPMRIFDTAGMRKK 263 Query: 281 DDIVEK 286 + EK Sbjct: 264 AKVQEK 269 >gi|328869018|gb|EGG17396.1| GTP-binding protein engA [Dictyostelium fasciculatum] Length = 770 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 32/89 (35%), Positives = 53/89 (59%), Gaps = 4/89 (4%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRE 279 KI I+G NAGKSSL N + +++ +IV+D+PGTT D + L + + + + DTAGIR Sbjct: 307 KISIVGQPNAGKSSLLNRIIEQERSIVSDVPGTTHDPVDCHLVWRDKHDLTLIDTAGIRR 366 Query: 280 --TDDI-VEKEGIKRTFLEVENADLILLL 305 T + +EK + +E + ++L + Sbjct: 367 RATHRVGLEKSSVLWAMKAIERSHVVLFV 395 Score = 44.3 bits (103), Expect = 0.036, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 1/57 (1%) Query: 222 IVILGHSNAGKSSLFNALAK-KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 I ++G N GKS+LFN + + + A+V DIPGTTRD + + G ++ DT G+ Sbjct: 120 IALVGKPNVGKSTLFNRIVESQRQALVEDIPGTTRDRYYGEAIVYGKQFQVVDTGGM 176 >gi|238022840|ref|ZP_04603266.1| hypothetical protein GCWU000324_02757 [Kingella oralis ATCC 51147] gi|237866043|gb|EEP67179.1| hypothetical protein GCWU000324_02757 [Kingella oralis ATCC 51147] Length = 70 Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 7/69 (10%) Query: 375 SHKRHLYHLSQTVRYLEMASLNEKDCG---LDIIAENLRLASVSLGKITGCVDVEQLLDI 431 + RH++ L R L+ A+L CG L+++AE+LRLA + +ITG + LL + Sbjct: 6 ARSRHIHALETAQRELDNAAL----CGNHQLELLAEHLRLAQNACSEITGEFTADDLLGV 61 Query: 432 IFSKFCIGK 440 IFS+FCIGK Sbjct: 62 IFSRFCIGK 70 >gi|325265154|ref|ZP_08131880.1| GTP-binding protein [Clostridium sp. D5] gi|324029558|gb|EGB90847.1| GTP-binding protein [Clostridium sp. D5] Length = 406 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 25/155 (16%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280 I I G NAGKSS+ NA+ +++AIV+DI GTT D + ++L V I DT G+ +T Sbjct: 14 IGIFGRRNAGKSSIINAITGQNLAIVSDIKGTTTDPVLKAMELLPLGPVVIIDTPGLDDT 73 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS----------FPKNIDFIFIGTKSD 330 ++ K I++ + + D+ +L+ I+S ++ K I F+ + KSD Sbjct: 74 GEL-GKLRIQKAYQILNKTDIAVLV--IDSTAGMTEADAGILDRIMKKQIPFVIVLNKSD 130 Query: 331 LYSTYTE---------EYDHLI--SSFTGEGLEEL 354 + T D++I S+ TGE + EL Sbjct: 131 IAGTSNAASSVNMPDVPSDNIIAVSTVTGENIHEL 165 >gi|284045183|ref|YP_003395523.1| ribosome-associated GTPase EngA [Conexibacter woesei DSM 14684] gi|283949404|gb|ADB52148.1| ribosome-associated GTPase EngA [Conexibacter woesei DSM 14684] Length = 484 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 ++ ++G N GKSSL N + D IV+++ GTTRD + + E + + DTAG+R Sbjct: 175 RLALIGRPNVGKSSLVNKMLGSDRVIVSEVAGTTRDAIDLPFRFEDRRLILVDTAGMRRQ 234 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305 + D +E R+ E AD+ L++ Sbjct: 235 AKVGDSIEYYTALRSRRAAERADVALVV 262 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 4/75 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ ++G+ N GKSSL N L + A+V + PG TRD + + G + DT G+ Sbjct: 2 KVAVVGYPNVGKSSLVNRLTQSREAVVHERPGVTRDRKELQTEWNGRRFTLIDTGGV--- 58 Query: 281 DDIVEKEGIKRTFLE 295 D+ +++ ++R+ E Sbjct: 59 -DLEDRDEMQRSIQE 72 >gi|229586356|ref|YP_002844857.1| GTP-binding protein Era [Rickettsia africae ESF-5] gi|228021406|gb|ACP53114.1| GTP-binding protein Era [Rickettsia africae ESF-5] Length = 339 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 49/159 (30%), Positives = 82/159 (51%), Gaps = 20/159 (12%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N+GKS+L N + + ++IVT TTR ++T + L+ V + DT GI E Sbjct: 55 VCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPK 114 Query: 282 DIVEKEGIKRTFLEVENADLILL-LKEINSKKEISF-------PKNIDFIFIGTKSDLYS 333 +EK ++ + + +ADL+LL + + S +I+ NI IF+ K D+ S Sbjct: 115 GSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNIVDKLRSLNIVPIFLLNKIDIES 174 Query: 334 TY--------TEEY-DHL---ISSFTGEGLEELINKIKS 360 Y TE + D L IS+ +G+ ++ L+ I S Sbjct: 175 KYLNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITS 213 >gi|312623204|ref|YP_004024817.1| small GTP-binding protein [Caldicellulosiruptor kronotskyensis 2002] gi|312203671|gb|ADQ46998.1| small GTP-binding protein [Caldicellulosiruptor kronotskyensis 2002] Length = 403 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 34/86 (39%), Positives = 54/86 (62%), Gaps = 4/86 (4%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTAGIRE 279 I I G NAGKSSL NA+ + +AIV+D+PGTT D + +++ G +V I DTAGI + Sbjct: 12 IAIFGKRNAGKSSLINAITNQPIAIVSDMPGTTTDPVYKSMEILPLGPVVLI-DTAGI-D 69 Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305 + I+ K +++T + D+ +L+ Sbjct: 70 DEGILGKLRVEKTLEVLNKTDIAILV 95 >gi|157964182|ref|YP_001499006.1| GTP-binding protein Era [Rickettsia massiliae MTU5] gi|157843958|gb|ABV84459.1| GTP-binding protein Era [Rickettsia massiliae MTU5] Length = 347 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 49/159 (30%), Positives = 82/159 (51%), Gaps = 20/159 (12%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N+GKS+L N + + ++IVT TTR ++T + L+ V + DT GI E Sbjct: 63 VCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPK 122 Query: 282 DIVEKEGIKRTFLEVENADLILL-LKEINSKKEISF-------PKNIDFIFIGTKSDLYS 333 +EK ++ + + +ADL+LL + + S +I+ NI IF+ K D+ S Sbjct: 123 GSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIES 182 Query: 334 TY--------TEEY-DHL---ISSFTGEGLEELINKIKS 360 Y TE + D L IS+ +G+ ++ L+ I S Sbjct: 183 KYLNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITS 221 >gi|146296153|ref|YP_001179924.1| small GTP-binding protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409729|gb|ABP66733.1| iron-only hydrogenase maturation protein HydF [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 403 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 37/88 (42%), Positives = 54/88 (61%), Gaps = 8/88 (9%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTAGIRE 279 I I G NAGKSSL NA+ + +AIV+D+PGTT D + +++ G +V I DTAGI Sbjct: 12 IAIFGKRNAGKSSLINAITNQPIAIVSDMPGTTTDPVYKSMEILPLGPVVLI-DTAGI-- 68 Query: 280 TDDIVE--KEGIKRTFLEVENADLILLL 305 DD+ E K I++T + D+ +L+ Sbjct: 69 -DDVGELGKLRIEKTLEVLNKTDIAILV 95 >gi|114762902|ref|ZP_01442334.1| GTP-binding protein EngA [Pelagibaca bermudensis HTCC2601] gi|114544512|gb|EAU47519.1| GTP-binding protein EngA [Roseovarius sp. HTCC2601] Length = 487 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 1/87 (1%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 + + I+G N GKS+LFN L + +A+V D PG TRD+ + L + DTAG+ + Sbjct: 3 FSLAIVGRPNVGKSTLFNRLVGRRLALVDDQPGVTRDLREGEGKLGDLRFTVIDTAGLED 62 Query: 280 -TDDIVEKEGIKRTFLEVENADLILLL 305 TDD + + T V+ AD+ L + Sbjct: 63 ATDDSLPGRMRRLTERAVDMADVCLFM 89 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 39/66 (59%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I ++G NAGKS+L N + ++ + G TRD +++ + G ++I DTAG+R+ Sbjct: 203 QIAVVGRPNAGKSTLVNKIIGEERLLTGPEAGITRDAISVRTEWGGVPMRIFDTAGMRKK 262 Query: 281 DDIVEK 286 + EK Sbjct: 263 ARVQEK 268 >gi|51473231|ref|YP_066988.1| GTP-binding protein Era [Rickettsia typhi str. Wilmington] gi|81390309|sp|Q68XY6|ERA_RICTY RecName: Full=GTPase Era gi|51459543|gb|AAU03506.1| Era-like GTP-binding protein [Rickettsia typhi str. Wilmington] Length = 295 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 80/167 (47%), Gaps = 24/167 (14%) Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 I+ + I+G N+GKS+L N + + ++IVT TTR ++T + L+ + + DT Sbjct: 5 IQKTISVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQIILYDTP 64 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS----------FPKNIDFIFI 325 GI E ++EK ++ + + +ADL+L + I+S K + NI IF+ Sbjct: 65 GIFEPKGMLEKAMVRCAWSSLYSADLVLSI--IDSLKPLDDMAHNILNQFCLLNIVPIFL 122 Query: 326 GTKSDLYSTYTEEYDHL------------ISSFTGEGLEELINKIKS 360 K D+ S Y + IS+ G+ ++ L+ IKS Sbjct: 123 LNKIDIESKYLNDIKAFLKISHPKSLLFPISALCGKNVDVLLKYIKS 169 >gi|325279601|ref|YP_004252143.1| small GTP-binding protein [Odoribacter splanchnicus DSM 20712] gi|324311410|gb|ADY31963.1| small GTP-binding protein [Odoribacter splanchnicus DSM 20712] Length = 399 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 68/135 (50%), Gaps = 9/135 (6%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIR 278 + +VI G N GKSS+ N + ++D A+V+ I GTT D + ++ G V + DTAG Sbjct: 4 FHLVITGRRNTGKSSIVNTILQQDKAVVSPIAGTTTDPVKKSYEIPGVASVVLIDTAGTD 63 Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL---KEINSKKEI---SFPK-NIDFIFIGTKSDL 331 + ++ E +K+TF + AD LL+ +EI F K + F+ + KSDL Sbjct: 64 DEGELGELR-VKKTFETIRQADAALLVITGNRFGHFEEILTEEFQKLKLPFLIVHNKSDL 122 Query: 332 YSTYTEEYDHLISSF 346 + + L+ + Sbjct: 123 EPLQEQLREKLLQKY 137 >gi|307719724|ref|YP_003875256.1| hypothetical protein STHERM_c20490 [Spirochaeta thermophila DSM 6192] gi|306533449|gb|ADN02983.1| hypothetical protein STHERM_c20490 [Spirochaeta thermophila DSM 6192] Length = 408 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 50/175 (28%), Positives = 82/175 (46%), Gaps = 19/175 (10%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRE 279 ++ ++G++NAGKSSLF L + V I D P T D T + G+ V +SDT G + Sbjct: 199 RVSLVGYTNAGKSSLFTRLTGQAVRI-QDRPFVTLDTTTRTCLIPGWGRVVVSDTVGFIQ 257 Query: 280 TDDIVEKEGIKRTFLEVENADLIL---------LLKEINSKKEISF---PKNIDFIFIGT 327 + T EV +A L+L LL +++ +E+ +I I + Sbjct: 258 HLPHTLVDAFHATLEEVRDAHLLLEVVDLSSPNLLLHLSTTEEVLTEIGAHHIPRIRVYN 317 Query: 328 KSDLYSTYT--EEYDH---LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377 K+D S + DH L+S+ TGEG+E L++ I + + +P H+ Sbjct: 318 KADRSSPHPLLPPSDHPEILVSAKTGEGIEGLLSLIVREMERHYPIETLELPYHR 372 >gi|225871164|ref|YP_002747111.1| GTP-binding protein EngA [Streptococcus equi subsp. equi 4047] gi|225700568|emb|CAW95070.1| GTP-binding protein EngA [Streptococcus equi subsp. equi 4047] Length = 446 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 70/145 (48%), Gaps = 31/145 (21%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRETDD 282 ++G N GKSSL NA+ ++ I + + GTTRD + D G + DTAG+R++ Sbjct: 189 LIGRPNVGKSSLINAILGEERVIASPVAGTTRDAIDTSFTDESGQAYTMIDTAGMRKSGK 248 Query: 283 I---VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY 339 + EK + R ++ +D++L++ IN+++ I +Y Sbjct: 249 VYENTEKYSVMRAMRAIDRSDIVLMV--INAEEGI----------------------RDY 284 Query: 340 DHLISSF---TGEGLEELINKIKSI 361 D I+ F G+G+ ++NK +I Sbjct: 285 DKRIAGFAHEAGKGMIIVVNKWDTI 309 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN +A + ++IV D+ G TRD + + + DT GI + D Sbjct: 16 VAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTTGEWLNRQFSLIDTGGIDDVD 75 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + + ++ AD+I+ + Sbjct: 76 APFMEQIKHQAHIAMDEADVIVFV 99 >gi|34580888|ref|ZP_00142368.1| GTP-binding protein Era [Rickettsia sibirica 246] gi|28262273|gb|EAA25777.1| GTP-binding protein Era [Rickettsia sibirica 246] Length = 339 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 49/159 (30%), Positives = 82/159 (51%), Gaps = 20/159 (12%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N+GKS+L N + + ++IVT TTR ++T + L+ V + DT GI E Sbjct: 55 VCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPK 114 Query: 282 DIVEKEGIKRTFLEVENADLILL-LKEINSKKEISF-------PKNIDFIFIGTKSDLYS 333 +EK ++ + + +ADL+LL + + S +I+ NI IF+ K D+ S Sbjct: 115 GSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNIVDKLRSLNIVPIFLLNKIDIES 174 Query: 334 TY--------TEEY-DHL---ISSFTGEGLEELINKIKS 360 Y TE + D L IS+ +G+ ++ L+ I S Sbjct: 175 KYLNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITS 213 >gi|315282971|ref|ZP_07871260.1| GTP-binding protein EngA [Listeria marthii FSL S4-120] gi|313613383|gb|EFR87238.1| GTP-binding protein EngA [Listeria marthii FSL S4-120] Length = 191 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN + + V+IV D+PG TRD + + G I DT GI +D Sbjct: 6 VAIVGRPNVGKSTIFNRIVGERVSIVEDVPGVTRDRIYNSAEWLGKEFNIIDTGGIDLSD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + ++ + + ++ AD+I+ + Sbjct: 66 EPFLEQIRAQAEIAIDEADVIIFI 89 >gi|163761004|ref|ZP_02168082.1| GTP-binding protein EngA [Hoeflea phototrophica DFL-43] gi|162281785|gb|EDQ32078.1| GTP-binding protein EngA [Hoeflea phototrophica DFL-43] Length = 499 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 38/66 (57%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G NAGKS+L N +D + G TRD + +D + +G +K+ DTAG+R Sbjct: 205 RVAIVGRPNAGKSTLINQFLGQDRLLTGPEAGITRDSIAVDFEWKGRKIKLFDTAGLRRK 264 Query: 281 DDIVEK 286 + EK Sbjct: 265 ARVQEK 270 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET- 280 + I+G N GKS+LFN LA + +A+V D PG TRD D L + DTAG+ + Sbjct: 5 LAIVGRPNVGKSTLFNRLAGRKLALVDDTPGVTRDRRPGDARLVDLRFTMIDTAGLEVSG 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 D +E +T ++ AD + L Sbjct: 65 PDTLEGRMRAQTEAAIDEADGAMFL 89 >gi|148656306|ref|YP_001276511.1| GTP-binding protein Era [Roseiflexus sp. RS-1] gi|148568416|gb|ABQ90561.1| GTP-binding protein Era [Roseiflexus sp. RS-1] Length = 451 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 43/168 (25%), Positives = 79/168 (47%), Gaps = 23/168 (13%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R+G+ + ++G N GKS+L NAL + VAIV+ P TTR + L + DT G Sbjct: 162 RSGF-VALVGRPNVGKSTLLNALLGQKVAIVSPKPQTTRTAIRGILSRPDAQIVFVDTPG 220 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI---------FIGT 327 I E + + +K+ + +AD++ ++ +I S+ S + I + + Sbjct: 221 IHEPRNRLGAYMVKQARRAIPDADVVCMVVDI-SRPPGSLDERIAALVRKAQARRMLVLN 279 Query: 328 KSDLYSTYTEEY------------DHLISSFTGEGLEELINKIKSILS 363 K DL + E+ + +S+ G+GL+ L+++I +L Sbjct: 280 KIDLPTRSGNEHLQAYRALAPWDMEVAVSALRGQGLDALVDEIVRLLP 327 >gi|15892081|ref|NP_359795.1| GTP-binding protein Era [Rickettsia conorii str. Malish 7] gi|21263592|sp|Q92JA9|ERA_RICCN RecName: Full=GTPase Era gi|15619203|gb|AAL02696.1| GTP-binding protein Era [Rickettsia conorii str. Malish 7] Length = 339 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 49/159 (30%), Positives = 82/159 (51%), Gaps = 20/159 (12%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N+GKS+L N + + ++IVT TTR ++T + L+ V + DT GI E Sbjct: 55 VCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPK 114 Query: 282 DIVEKEGIKRTFLEVENADLILL-LKEINSKKEISF-------PKNIDFIFIGTKSDLYS 333 +EK ++ + + +ADL+LL + + S +I+ NI IF+ K D+ S Sbjct: 115 GSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNIVDKLRSLNIVPIFLLNKIDIES 174 Query: 334 TY--------TEEY-DHL---ISSFTGEGLEELINKIKS 360 Y TE + D L IS+ +G+ ++ L+ I S Sbjct: 175 KYLNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITS 213 >gi|317472657|ref|ZP_07931972.1| small GTP-binding protein [Anaerostipes sp. 3_2_56FAA] gi|316899834|gb|EFV21833.1| small GTP-binding protein [Anaerostipes sp. 3_2_56FAA] Length = 395 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 81/153 (52%), Gaps = 18/153 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGIRE 279 I + G NAGKSS+ NAL +++AIV+D+ GTT D + ++L G +V I DT G+ + Sbjct: 14 IALFGRRNAGKSSIVNALTGQELAIVSDVKGTTTDPVFKAMELLPLGPVVMI-DTPGLDD 72 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDL 331 ++ EK +K+ + D+ L++ + + ++ + + ++ + K+DL Sbjct: 73 EGELGEKR-VKKAKEVLRKTDIALVIADAETGITEFEQGILDLIRERKLPYLIVYNKTDL 131 Query: 332 YS-TYTEEYDH--LISSFTGE---GLEELINKI 358 E+ DH +S+ T E GL+E I K+ Sbjct: 132 AGRVRAEDNDHACFVSAVTKEGIFGLKEAIGKL 164 >gi|314922998|gb|EFS86829.1| GTP-binding protein HflX [Propionibacterium acnes HL001PA1] gi|314966774|gb|EFT10873.1| GTP-binding protein HflX [Propionibacterium acnes HL082PA2] gi|314981109|gb|EFT25203.1| GTP-binding protein HflX [Propionibacterium acnes HL110PA3] gi|315091935|gb|EFT63911.1| GTP-binding protein HflX [Propionibacterium acnes HL110PA4] gi|315093309|gb|EFT65285.1| GTP-binding protein HflX [Propionibacterium acnes HL060PA1] gi|315103436|gb|EFT75412.1| GTP-binding protein HflX [Propionibacterium acnes HL050PA2] gi|327327600|gb|EGE69376.1| GTP-binding protein HflX [Propionibacterium acnes HL103PA1] Length = 493 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 55/190 (28%), Positives = 89/190 (46%), Gaps = 32/190 (16%) Query: 211 KLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLE 265 K + IRN + I+G++NAGKSSL N L + V A+ + TTR T D Sbjct: 263 KRADRIRNKVPSVAIVGYTNAGKSSLLNRLTRAGVLVENALFATLDPTTRRATTSD---- 318 Query: 266 GYLVKISDTAG-IRE-TDDIV-------EKEGIKRTFLEVENADLILLLKEINSKKEISF 316 G + ++DT G +R D+V E+ + L V +AD L ++++ + + Sbjct: 319 GRVYTLTDTVGFVRHLPHDLVEAFASTLEETAMADVLLHVVDADDPDPLGQVDAVRGVLS 378 Query: 317 ---PKNIDFIFIGTKSD---------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364 NI I + K D L ST+ Y L+S+ TGEG ++L+ I+ +L Sbjct: 379 GIGASNIPEILVLNKIDRLSDETILTLRSTFPGAY--LVSAHTGEGTDKLVEAIEDVLPI 436 Query: 365 KFKKLPFSIP 374 +++ IP Sbjct: 437 PSQRVDVVIP 446 >gi|91201100|emb|CAJ74159.1| strongly similar to GTP-binding protein Era [Candidatus Kuenenia stuttgartiensis] Length = 301 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 1/91 (1%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R+GY + ++G N GKS+L N ++IVT P TTR + L E Y + DT G Sbjct: 11 RSGY-VAVIGEPNVGKSTLINNYMGCKLSIVTHKPQTTRKKIMGILTKEDYQIIFFDTPG 69 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKE 307 I E ++K +K + ++ AD++L++ E Sbjct: 70 IIEPTYELQKYMVKTAYSVIKEADILLMMVE 100 >gi|315658242|ref|ZP_07911114.1| ribosome-associated GTPase EngA [Staphylococcus lugdunensis M23590] gi|315496571|gb|EFU84894.1| ribosome-associated GTPase EngA [Staphylococcus lugdunensis M23590] Length = 436 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSL NA+ ++ IV+++ GTTRD + + + + DTAG+R+ Sbjct: 177 RLSIIGRPNVGKSSLVNAILGEERVIVSNVAGTTRDAIDTEYTYDNQDYVLIDTAGMRKK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + EK + R +E ++++L++ Sbjct: 237 GKVYESTEKYSVLRALKAIERSNVVLIV 264 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 45/84 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN + + V+IV D PG TRD + + + I DT GI D Sbjct: 6 VAIVGKPNVGKSTIFNRVVGERVSIVEDTPGVTRDRIYSSGEWLTHEFNIIDTGGIEIGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + + + ++ AD+I+ + Sbjct: 66 APFQTQIRAQAEIAIDEADVIIFM 89 >gi|302550423|ref|ZP_07302765.1| ribosome-associated GTPase EngA [Streptomyces viridochromogenes DSM 40736] gi|302468041|gb|EFL31134.1| ribosome-associated GTPase EngA [Streptomyces viridochromogenes DSM 40736] Length = 498 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 38/59 (64%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 +I ++G N GKSSL N +A ++ +V ++ GTTRD + ++L G K DTAGIR+ Sbjct: 236 RIALIGRPNVGKSSLLNKVANEERVVVNELAGTTRDPVDELIELGGVTWKFVDTAGIRK 294 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 32/55 (58%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 + ++G N GKS+L N + + A+V D PG TRD +T + + G K+ DT G Sbjct: 61 LAVVGRPNVGKSTLVNRIIGRREAVVEDKPGVTRDRVTYEAEWAGRRFKVVDTGG 115 >gi|237756936|ref|ZP_04585406.1| GTP-binding protein EngA [Sulfurihydrogenibium yellowstonense SS-5] gi|237690908|gb|EEP60046.1| GTP-binding protein EngA [Sulfurihydrogenibium yellowstonense SS-5] Length = 209 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 34/57 (59%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 +++ I+G N GKSSLFN + + AIV D+PG TRD + + G ++ DT G Sbjct: 2 FRVAIVGRPNVGKSSLFNRIIGQRKAIVEDVPGVTRDRIVSTAEWRGVKFEVVDTGG 58 >gi|331091761|ref|ZP_08340593.1| hypothetical protein HMPREF9477_01236 [Lachnospiraceae bacterium 2_1_46FAA] gi|330402660|gb|EGG82227.1| hypothetical protein HMPREF9477_01236 [Lachnospiraceae bacterium 2_1_46FAA] Length = 399 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 55/171 (32%), Positives = 83/171 (48%), Gaps = 20/171 (11%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDTA 275 N I I G N GKSSL NAL + ++IV+D GTT D + ++L G +V I DTA Sbjct: 10 NRIHIGIFGRRNCGKSSLINALTGQALSIVSDTKGTTTDPVLKAMELLPIGPVVFI-DTA 68 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILL---------LKEINSKKEISFPKNIDFIFIG 326 G+ + ++ + I +T+ + D+ LL +++ N K+I K I ++ I Sbjct: 69 GLDDEGELGQLR-ITKTYQMLNKTDIALLVIDSSVGMTVEDENILKKIQ-DKQIPYLIIH 126 Query: 327 TKSDLYSTYT----EEYDHL--ISSFTGEGLEELINKIKSILSNKFKKLPF 371 K DL T E +H IS+ TG + EL KI ++L P Sbjct: 127 NKCDLPEKSTLSLAEHTEHTIEISAKTGFHIRELKEKISTLLPKDVNGTPI 177 >gi|282854031|ref|ZP_06263368.1| GTP-binding protein HflX [Propionibacterium acnes J139] gi|282583484|gb|EFB88864.1| GTP-binding protein HflX [Propionibacterium acnes J139] Length = 483 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 55/190 (28%), Positives = 88/190 (46%), Gaps = 32/190 (16%) Query: 211 KLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLE 265 K + IRN + I+G++NAGKSSL N L + V A+ + TTR T D Sbjct: 253 KRADRIRNKVPSVAIVGYTNAGKSSLLNRLTRAGVLVENALFATLDPTTRRATTSD---- 308 Query: 266 GYLVKISDTAG-IRE-TDDIV-------EKEGIKRTFLEVENADLILLLKEINSKK---- 312 G + ++DT G +R D+V E+ + L V +AD L ++++ + Sbjct: 309 GRVYTLTDTVGFVRHLPHDLVEAFASTLEETAMADVLLHVVDADDPDPLGQVDAVRGVLS 368 Query: 313 --------EISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364 EI ID + T L ST+ Y L+S+ TGEG ++L+ I+ +L Sbjct: 369 GIGASNIPEILVLNKIDRLSDETILTLRSTFPGAY--LVSAHTGEGTDKLVEAIEDVLPI 426 Query: 365 KFKKLPFSIP 374 +++ IP Sbjct: 427 PSQRVDVVIP 436 >gi|239631541|ref|ZP_04674572.1| GTP-binding protein EngA [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239526006|gb|EEQ65007.1| GTP-binding protein EngA [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 435 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 32/97 (32%), Positives = 53/97 (54%), Gaps = 5/97 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K ++G N GKSSL NA+ ++ IV+ I GTTRD + + + DTAGIR+ Sbjct: 176 KFSLIGRPNVGKSSLVNAILGENRVIVSPIEGTTRDAIDTKFEAVDETFTMIDTAGIRKR 235 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEI 314 + EK + R ++ +D++L + IN+++ I Sbjct: 236 GKVYENTEKYAVMRALRAIDRSDVVLFV--INAEEGI 270 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 48/89 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN + + V+IV D PG TRD + + G + DT GI D Sbjct: 6 LAIVGRPNVGKSTIFNRILGERVSIVEDTPGVTRDRIYGTSEWLGKEFAVIDTGGIDLGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310 + + + + ++ AD+IL L +I S Sbjct: 66 EPFLAQIKDQAEIAIDEADVILFLADIES 94 >gi|116494866|ref|YP_806600.1| GTP-binding protein EngA [Lactobacillus casei ATCC 334] gi|122263716|sp|Q039G4|DER_LACC3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|116105016|gb|ABJ70158.1| Predicted GTPase [Lactobacillus casei ATCC 334] Length = 435 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 32/97 (32%), Positives = 53/97 (54%), Gaps = 5/97 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K ++G N GKSSL NA+ ++ IV+ I GTTRD + + + DTAGIR+ Sbjct: 176 KFSLIGRPNVGKSSLVNAILGENRVIVSPIEGTTRDAIDTKFEAVDETFTMIDTAGIRKR 235 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEI 314 + EK + R ++ +D++L + IN+++ I Sbjct: 236 GKVYENTEKYAVMRALRAIDRSDVVLFV--INAEEGI 270 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 48/89 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN + + V+IV D PG TRD + + G + DT GI D Sbjct: 6 LAIVGRPNVGKSTIFNRILGERVSIVEDTPGVTRDRIYGKSEWLGKEFAVIDTGGIDLGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310 + + + + ++ AD+IL L +I S Sbjct: 66 EPFLAQIKDQAEIAIDEADVILFLADIES 94 >gi|167748931|ref|ZP_02421058.1| hypothetical protein ANACAC_03712 [Anaerostipes caccae DSM 14662] gi|167651553|gb|EDR95682.1| hypothetical protein ANACAC_03712 [Anaerostipes caccae DSM 14662] Length = 395 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 81/153 (52%), Gaps = 18/153 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGIRE 279 I + G NAGKSS+ NAL +++AIV+D+ GTT D + ++L G +V I DT G+ + Sbjct: 14 IALFGRRNAGKSSIVNALTGQELAIVSDVKGTTTDPVFKAMELLPLGPVVMI-DTPGLDD 72 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDL 331 ++ EK +K+ + D+ L++ + + ++ + + ++ + K+DL Sbjct: 73 EGELGEKR-VKKAKEVLRKTDIALVIADAETGITEFEQGILDLIRERKLPYLIVYNKTDL 131 Query: 332 YS-TYTEEYDH--LISSFTGE---GLEELINKI 358 E+ DH +S+ T E GL+E I K+ Sbjct: 132 AGRVRAEDNDHACFVSAVTKEGIFGLKEAIGKL 164 >gi|157692783|ref|YP_001487245.1| GTP-binding protein EngA [Bacillus pumilus SAFR-032] gi|166920097|sp|A8FEL8|DER_BACP2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|157681541|gb|ABV62685.1| GTPase [Bacillus pumilus SAFR-032] Length = 436 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 45/168 (26%), Positives = 78/168 (46%), Gaps = 25/168 (14%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN +A + ++IV D PG TRD + + Y + DT GI D Sbjct: 6 VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEI-SFPKNIDFIFIGTK------------ 328 + + + + ++ AD+I+ + +N + + S + + I TK Sbjct: 66 EPFLAQIRHQAEIAMDEADVIIFM--VNGRDGVTSADEEVAKILYRTKKPVVLAVNKLDN 123 Query: 329 ----SDLYSTYTEEY--DHLISSFTGEGLEELINKIKSILSNKFKKLP 370 SD+Y Y + + IS G GL +L++ + + FK LP Sbjct: 124 PEMRSDVYDFYALGFGEPYPISGTHGLGLGDLLDAV----AEHFKNLP 167 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 3/85 (3%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 ++G N GKSSL NA+ +D IV++I GTTRD + I DTAG+R+ + Sbjct: 180 LIGRPNVGKSSLVNAMLGEDRVIVSNIAGTTRDAVDTMFAYNQRDFVIVDTAGMRKKGKV 239 Query: 284 ---VEKEGIKRTFLEVENADLILLL 305 EK + R ++ +D++ ++ Sbjct: 240 YETTEKYSVLRALKAIDRSDVVAVV 264 >gi|37999702|sp|Q8G6A8|DER_BIFLO RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|23325955|gb|AAN24555.1| probable GTP binding protein [Bifidobacterium longum NCC2705] Length = 463 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 33/90 (36%), Positives = 52/90 (57%), Gaps = 7/90 (7%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGIR 278 ++ ++G N GKSSL N LA+++ A+V D+ GTTRD + +++D E +L DTAGI+ Sbjct: 203 RVALVGRPNVGKSSLLNQLAREERAVVNDLAGTTRDPVDEIVNIDGEDWL--FIDTAGIK 260 Query: 279 ETDDIV---EKEGIKRTFLEVENADLILLL 305 + E RT +E +L L+L Sbjct: 261 RRQHKLTGAEYYSSLRTQAAIERCELALIL 290 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 43/84 (51%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKSSL N + + A+V D PG TRD ++ D + G K+ DT G Sbjct: 29 LAVVGRPNVGKSSLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADV 88 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + +E + + V AD ++ + Sbjct: 89 EGIESAIASQAQVAVTLADAVVFV 112 >gi|162447731|ref|YP_001620863.1| EngA family GTP-binding protein [Acholeplasma laidlawii PG-8A] gi|161985838|gb|ABX81487.1| GTP-binding protein, EngA family [Acholeplasma laidlawii PG-8A] Length = 438 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 3/85 (3%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 +LG N GKSSL NA+ ++ IV+DI GTT D + + I DTAGI++ + Sbjct: 178 VLGRPNVGKSSLVNAIIGEERVIVSDISGTTTDAIDTTFTKDKQKYTIIDTAGIKKRGKV 237 Query: 284 VE---KEGIKRTFLEVENADLILLL 305 E K + R +E +D+ LL+ Sbjct: 238 YENLDKYSVLRAMTALERSDIALLV 262 Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 30/58 (51%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 + + I+G N GKSSLFN + + +I D+ G TRD + + + DT GI Sbjct: 3 FTVAIVGRPNVGKSSLFNRIIGERFSITDDVAGVTRDRIYAQAEWLTKRFSLIDTGGI 60 >gi|114771865|ref|ZP_01449258.1| GTP-binding protein EngA [alpha proteobacterium HTCC2255] gi|114547681|gb|EAU50572.1| GTP-binding protein EngA [alpha proteobacterium HTCC2255] Length = 497 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 36/63 (57%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 + + ++G N GKS+LFN L + +A+V D PG TRD+ D + + DTAG+ E Sbjct: 3 FTVALVGRPNVGKSTLFNRLVGRRLALVDDQPGVTRDLREGDAKMGPVKFTVIDTAGLEE 62 Query: 280 TDD 282 D Sbjct: 63 ATD 65 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 40/66 (60%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I I+G NAGKS+L N + ++ + G TRD ++I+ D + +++ DTAGIR+ Sbjct: 202 QISIIGRPNAGKSTLVNQILGQERMLTGPEAGITRDSISINHDWDDVPMRLWDTAGIRKK 261 Query: 281 DDIVEK 286 + EK Sbjct: 262 AKVQEK 267 >gi|325290811|ref|YP_004266992.1| iron-only hydrogenase maturation protein HydF [Syntrophobotulus glycolicus DSM 8271] gi|324966212|gb|ADY56991.1| iron-only hydrogenase maturation protein HydF [Syntrophobotulus glycolicus DSM 8271] Length = 417 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 52/85 (61%), Gaps = 2/85 (2%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAGIRET 280 I + G NAGKSSL NAL +D+A+V+D+PGTT D + ++ L V + DTAG+ + Sbjct: 12 ISLFGRRNAGKSSLINALTNQDIALVSDVPGTTTDPVYKAMEILPIGPVMLIDTAGLDDV 71 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 + E ++++ ++ D+ LL+ Sbjct: 72 GSLGELR-VRKSRQVLDKTDVTLLV 95 >gi|307328928|ref|ZP_07608097.1| ribosome-associated GTPase EngA [Streptomyces violaceusniger Tu 4113] gi|306885438|gb|EFN16455.1| ribosome-associated GTPase EngA [Streptomyces violaceusniger Tu 4113] Length = 487 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 37/58 (63%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 +I ++G N GKSSL N +A ++ +V ++ GTTRD + ++L G K DTAGIR Sbjct: 226 RIALVGRPNVGKSSLLNKVANEERVVVNELAGTTRDPVDEIIELGGTTWKFVDTAGIR 283 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 32/55 (58%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 + ++G N GKS+L N + + A+V D PG TRD +T + + G K+ DT G Sbjct: 52 LAVVGRPNVGKSTLVNRILGRREAVVEDRPGVTRDRVTYEAEWSGRRFKVVDTGG 106 >gi|239932165|ref|ZP_04689118.1| GTP-binding protein EngA [Streptomyces ghanaensis ATCC 14672] gi|291440533|ref|ZP_06579923.1| GTP-binding protein EngA [Streptomyces ghanaensis ATCC 14672] gi|291343428|gb|EFE70384.1| GTP-binding protein EngA [Streptomyces ghanaensis ATCC 14672] Length = 496 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 4/92 (4%) Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247 + ++L+ +L + D + G + ++ ++G N GKSSL N +A ++ +V Sbjct: 206 GTGDMLDQVLEVLPDAPAQT----FGTAVGGPRRVALIGRPNVGKSSLLNKVAGEERVVV 261 Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 ++ GTTRD + ++L G K DTAGIR+ Sbjct: 262 NELAGTTRDPVDEMIELGGKTWKFVDTAGIRK 293 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/84 (28%), Positives = 43/84 (51%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+L N + + A+V D PG TRD +T + + G K+ DT G + Sbjct: 61 LAVVGRPNVGKSTLVNRIIGRREAVVEDKPGVTRDRVTYEAEWAGRRFKVVDTGGWEQDV 120 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + +E AD ++ + Sbjct: 121 LGIDASVAAQAEYAIEAADAVVFV 144 >gi|191638373|ref|YP_001987539.1| GTP-binding protein EngA [Lactobacillus casei BL23] gi|301066427|ref|YP_003788450.1| putative GTPase [Lactobacillus casei str. Zhang] gi|238693036|sp|B3WE80|DER_LACCB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|190712675|emb|CAQ66681.1| GTP-binding protein engA [Lactobacillus casei BL23] gi|300438834|gb|ADK18600.1| Predicted GTPase [Lactobacillus casei str. Zhang] gi|327382401|gb|AEA53877.1| GTPase family protein [Lactobacillus casei LC2W] gi|327385602|gb|AEA57076.1| GTPase family protein [Lactobacillus casei BD-II] Length = 435 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 32/97 (32%), Positives = 53/97 (54%), Gaps = 5/97 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K ++G N GKSSL NA+ ++ IV+ I GTTRD + + + DTAGIR+ Sbjct: 176 KFSLIGRPNVGKSSLVNAILGENRVIVSPIEGTTRDAIDTKFEAVDETFTMIDTAGIRKR 235 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEI 314 + EK + R ++ +D++L + IN+++ I Sbjct: 236 GKVYENTEKYAVMRALRAIDRSDVVLFV--INAEEGI 270 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 48/89 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN + + V+IV D PG TRD + + G + DT GI D Sbjct: 6 LAIVGRPNVGKSTIFNRILGERVSIVEDTPGVTRDRIYGTSEWLGKEFAVIDTGGIDLGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310 + + + + ++ AD+IL L +I S Sbjct: 66 EPFLAQIKDQAEIAIDEADVILFLADIES 94 >gi|289550746|ref|YP_003471650.1| GTP-binding protein EngA [Staphylococcus lugdunensis HKU09-01] gi|289180278|gb|ADC87523.1| GTP-binding protein EngA [Staphylococcus lugdunensis HKU09-01] Length = 436 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSL NA+ ++ IV+++ GTTRD + + + + DTAG+R+ Sbjct: 177 RLSIIGRPNVGKSSLVNAILGEERVIVSNVAGTTRDAIDTEYTYDNQDYVLIDTAGMRKK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + EK + R +E ++++L++ Sbjct: 237 GKVYESTEKYSVLRALKAIERSNVVLIV 264 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 45/84 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN + + V+IV D PG TRD + + + I DT GI D Sbjct: 6 VAIVGKPNVGKSTIFNRVVGERVSIVEDTPGVTRDRIYSSGEWLTHEFNIIDTGGIEIGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + + + ++ AD+I+ + Sbjct: 66 APFQTQIRAQAEIAIDEADVIIFM 89 >gi|227542010|ref|ZP_03972059.1| GTP-binding protein EngA [Corynebacterium glucuronolyticum ATCC 51866] gi|227182225|gb|EEI63197.1| GTP-binding protein EngA [Corynebacterium glucuronolyticum ATCC 51866] Length = 537 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 6/88 (6%) Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250 +VL+ IL L D S I ++ ++G N GKSSL N L+ ++ ++V ++ Sbjct: 247 DVLDQILELFPDEPRQTS------ITEGPRRVALVGKPNVGKSSLLNKLSNEERSVVDNV 300 Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIR 278 GTT D + + LEG L K DTAG+R Sbjct: 301 AGTTVDPVDSLVQLEGGLWKFIDTAGLR 328 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 35/164 (21%), Positives = 74/164 (45%), Gaps = 17/164 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKSSL N + A+V D PG TRD ++ + G + DT G Sbjct: 99 VAVVGRPNVGKSSLVNRFLGRREAVVEDTPGVTRDRVSYLAEWNGQRFWVQDTGGWDPDA 158 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPKN-----IDFIFIGTKSDLYS 333 + ++ + +E AD+I+++ + N + + +N + I + K D Sbjct: 159 KGIHAAIARQAEVAMETADVIVMVVDTNVGITASDEVMARNLQRSDVPVILVANKVDSPK 218 Query: 334 TYTE---------EYDHLISSFTGEGLEELINKIKSILSNKFKK 368 E +Y + +S+ G+G +++++I + ++ ++ Sbjct: 219 QEAETAEFWGLGLDYPYPVSAQHGKGGADVLDQILELFPDEPRQ 262 >gi|194016775|ref|ZP_03055388.1| ribosome-associated GTPase EngA [Bacillus pumilus ATCC 7061] gi|194011381|gb|EDW20950.1| ribosome-associated GTPase EngA [Bacillus pumilus ATCC 7061] Length = 436 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 45/168 (26%), Positives = 78/168 (46%), Gaps = 25/168 (14%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN +A + ++IV D PG TRD + + Y + DT GI D Sbjct: 6 VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEI-SFPKNIDFIFIGTK------------ 328 + + + + ++ AD+I+ + +N + + S + + I TK Sbjct: 66 EPFLAQIRHQAEIAMDEADVIIFM--VNGRDGVTSADEEVAKILYRTKKPVVLAVNKLDN 123 Query: 329 ----SDLYSTYTEEY--DHLISSFTGEGLEELINKIKSILSNKFKKLP 370 SD+Y Y + + IS G GL +L++ + + FK LP Sbjct: 124 PEMRSDVYDFYALGFGEPYPISGTHGLGLGDLLDAV----AEHFKNLP 167 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 3/85 (3%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 ++G N GKSSL NA+ +D IV++I GTTRD + I DTAG+R+ + Sbjct: 180 LIGRPNVGKSSLVNAMLGEDRVIVSNIAGTTRDAVDTMFTYNQRDFVIVDTAGMRKKGKV 239 Query: 284 ---VEKEGIKRTFLEVENADLILLL 305 EK + R ++ +D++ ++ Sbjct: 240 YETTEKYSVLRALKAIDRSDVVAVV 264 >gi|78223518|ref|YP_385265.1| GTP-binding protein Era [Geobacter metallireducens GS-15] gi|123571481|sp|Q39T84|ERA_GEOMG RecName: Full=GTPase Era gi|78194773|gb|ABB32540.1| GTP-binding protein Era [Geobacter metallireducens GS-15] Length = 298 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 43/169 (25%), Positives = 76/169 (44%), Gaps = 22/169 (13%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R+G+ + I+G N GKS+L N + + + I +D P TTR+ + ++ G + DT G Sbjct: 7 RSGF-VSIIGRPNVGKSTLLNRILGEKIVITSDKPQTTRNRIQGIHNVPGAQIVFIDTPG 65 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK-----KEI-------SFP-----KN 319 I + + K ++ + DL+L L E N K +EI + P Sbjct: 66 IHQARSRLNKYMVEVALSAIREVDLVLFLVEANQKPGEQEQEIIDVLAGATAPVFLVINK 125 Query: 320 IDFIFIGTKSDLYSTYTEEYDHL----ISSFTGEGLEELINKIKSILSN 364 +D G + + Y + Y IS+ TG+G++ L+ ++ L Sbjct: 126 VDLTEKGAVLERIAAYKDRYPFREIVPISAGTGDGVDHLVELVRKALPQ 174 >gi|297568834|ref|YP_003690178.1| ribosome-associated GTPase EngA [Desulfurivibrio alkaliphilus AHT2] gi|296924749|gb|ADH85559.1| ribosome-associated GTPase EngA [Desulfurivibrio alkaliphilus AHT2] Length = 487 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 3/87 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + +G N GKSSL N L ++ +V+++PGTTRD + L + DTAGIR Sbjct: 229 VAFIGRPNVGKSSLINRLLGEERMVVSNLPGTTRDSVDTLLTRADKKYLLIDTAGIRRKG 288 Query: 282 DI---VEKEGIKRTFLEVENADLILLL 305 + VEK + R +E DL L++ Sbjct: 289 KVHEKVEKFSVLRALRTLERCDLALIV 315 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 43/142 (30%), Positives = 65/142 (45%), Gaps = 13/142 (9%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKSSLFN LA AIV PG TRD + + DT G+ E+D Sbjct: 52 VALVGRPNVGKSSLFNRLAGSRKAIVDPTPGVTRDRHYEKITWNDRRFILVDTGGL-ESD 110 Query: 282 DIVEKEGI--KRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTY---- 335 E + ++T V AD++L L + +E P + + + I +S Y Sbjct: 111 TTTEINRLIQEQTSQAVAEADVVLFLLD---GREGILPDDQEVVEILRRSGKKVFYLINK 167 Query: 336 ---TEEYDHLISSFTGEGLEEL 354 E+ L+ +F G+EEL Sbjct: 168 IDAPEQAAKLLPTFYELGVEEL 189 >gi|227488997|ref|ZP_03919313.1| GTP-binding protein EngA [Corynebacterium glucuronolyticum ATCC 51867] gi|227091073|gb|EEI26385.1| GTP-binding protein EngA [Corynebacterium glucuronolyticum ATCC 51867] Length = 537 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 6/88 (6%) Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250 +VL+ IL L D S I ++ ++G N GKSSL N L+ ++ ++V ++ Sbjct: 247 DVLDQILELFPDEPRQTS------ITEGPRRVALVGKPNVGKSSLLNKLSNEERSVVDNV 300 Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIR 278 GTT D + + LEG L K DTAG+R Sbjct: 301 AGTTVDPVDSLVQLEGGLWKFIDTAGLR 328 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 36/164 (21%), Positives = 74/164 (45%), Gaps = 17/164 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKSSL N + A+V D PG TRD ++ + G + DT G Sbjct: 99 VAIVGRPNVGKSSLVNRFLGRREAVVEDTPGVTRDRVSYLAEWNGQRFWVQDTGGWDPDA 158 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPKN-----IDFIFIGTKSDLYS 333 + ++ + +E AD+I+++ + N + + +N + I + K D Sbjct: 159 KGIHAAIARQAEVAMETADVIVMVVDTNVGITASDEVMARNLQRSDVPVILVANKVDSPK 218 Query: 334 TYTE---------EYDHLISSFTGEGLEELINKIKSILSNKFKK 368 E +Y + +S+ G+G +++++I + ++ ++ Sbjct: 219 QEAETAEFWGLGLDYPYPVSAQHGKGGADVLDQILELFPDEPRQ 262 >gi|307543972|ref|YP_003896451.1| GTP-binding protein EngA [Halomonas elongata DSM 2581] gi|307215996|emb|CBV41266.1| GTP-binding protein EngA [Halomonas elongata DSM 2581] Length = 467 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L + A+V D PG TRD + L G + DT GI + Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVADFPGLTRDRKYGNGMLGGKAYTVIDTGGISGDE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + ++ +++ ++ AD++L + Sbjct: 65 EGIDAAMAEQSLQAIDEADIVLFM 88 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 38/68 (55%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 +G I ++G N GKS+L N L +D +V D GTTRD + I + G + DTAG+ Sbjct: 176 SGIHIGVIGRPNVGKSTLVNRLLGEDRVVVFDEAGTTRDAIEIPFERRGKPYVLVDTAGV 235 Query: 278 RETDDIVE 285 R ++ E Sbjct: 236 RRRKNVRE 243 >gi|297568490|ref|YP_003689834.1| GTP-binding protein Era [Desulfurivibrio alkaliphilus AHT2] gi|296924405|gb|ADH85215.1| GTP-binding protein Era [Desulfurivibrio alkaliphilus AHT2] Length = 308 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 41/192 (21%), Positives = 83/192 (43%), Gaps = 25/192 (13%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G NAGKS+L N L + ++IV+ P TTR+ + + + DT G+ + Sbjct: 15 VALVGPPNAGKSTLLNNLLGQKISIVSPKPQTTRNRVLGVFNQPTRQIVFLDTPGLHQGR 74 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDFIFIGTKS 329 + E +K V D + + +++S + S P+ N+ + + K Sbjct: 75 SRLNSEMVKIARRTVSEVDAVAYMIDVSSPEADSRPEQRRQAGQLLQRANLPALLLCNKI 134 Query: 330 D---------LYSTYTEEYDHL----ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376 D + + + E Y +S+ +GEG E L++++ +L + P IP+ Sbjct: 135 DQVGKEKLLPVIAAWQEVYPFAAIIPLSALSGEGQETLLDELTRLLPRGPRLFPEDIPTD 194 Query: 377 KRHLYHLSQTVR 388 + + +R Sbjct: 195 ASERFLCGEIIR 206 >gi|302561447|ref|ZP_07313789.1| ribosome-associated GTPase EngA [Streptomyces griseoflavus Tu4000] gi|302479065|gb|EFL42158.1| ribosome-associated GTPase EngA [Streptomyces griseoflavus Tu4000] Length = 496 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 40/68 (58%) Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 G + ++ ++G N GKSSL N +A ++ +V ++ GTTRD + ++L G K Sbjct: 226 FGSAVGGPRRVALIGRPNVGKSSLLNKVAGEERVVVNELAGTTRDPVDEMIELGGKTWKF 285 Query: 272 SDTAGIRE 279 DTAGIR+ Sbjct: 286 VDTAGIRK 293 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/84 (28%), Positives = 43/84 (51%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+L N + + A+V D PG TRD +T + + G K+ DT G + Sbjct: 61 LAVVGRPNVGKSTLVNRIIGRREAVVEDKPGVTRDRVTYEAEWAGRRFKVVDTGGWEQDV 120 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + +E AD ++ + Sbjct: 121 LGIDASVAAQAEYAIEAADAVVFV 144 >gi|256827190|ref|YP_003151149.1| GTP-binding protein Era [Cryptobacterium curtum DSM 15641] gi|256583333|gb|ACU94467.1| GTP-binding protein Era [Cryptobacterium curtum DSM 15641] Length = 315 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 46/170 (27%), Positives = 77/170 (45%), Gaps = 21/170 (12%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G NAGKS+L NA+ K VAI +D TTR + + + + DT GI + Sbjct: 25 VTLVGRPNAGKSTLINAIMGKKVAITSDTAQTTRHRFRAVKTTDTFQLVLIDTPGIHKPH 84 Query: 282 DIVEKEGIKRTFLEVENADLILLL----KEINSKKE----ISFPKNIDFIFIGTKSDLYS 333 D + +E + ++ D++ L K + + E I P + + TK DL Sbjct: 85 DALGQELNESAIQALDGIDVVAFLVDGTKPVGTGDEWVSRIIAPIKAKKVLVITKIDLID 144 Query: 334 TYT-----------EEYDHLI--SSFTGEGLEELINKIKSILSNKFKKLP 370 T ++D I S+ +GEG+E +NK+ S+L + P Sbjct: 145 QDTIDAQMEAASALADWDAKIQLSAVSGEGVEFFLNKMASLLPVGPRWFP 194 >gi|257452783|ref|ZP_05618082.1| GTP-binding protein Era [Fusobacterium sp. 3_1_5R] gi|257466849|ref|ZP_05631160.1| GTP-binding protein Era [Fusobacterium gonidiaformans ATCC 25563] gi|315917997|ref|ZP_07914237.1| GTP-binding protein era [Fusobacterium gonidiaformans ATCC 25563] gi|317059324|ref|ZP_07923809.1| GTP-binding protein era [Fusobacterium sp. 3_1_5R] gi|313685000|gb|EFS21835.1| GTP-binding protein era [Fusobacterium sp. 3_1_5R] gi|313691872|gb|EFS28707.1| GTP-binding protein era [Fusobacterium gonidiaformans ATCC 25563] Length = 296 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 33/94 (35%), Positives = 52/94 (55%), Gaps = 2/94 (2%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+L N L + VAIV+D GTTRD + L+ +G DT GI + Sbjct: 6 IAVVGRPNVGKSTLMNKLVSEKVAIVSDKAGTTRDNIKGILNFQGKQYIFIDTPGIHKPK 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 ++ + + +++AD IL L ++ +EIS Sbjct: 66 HLLGEYMTEIAIRSLKDADAILFL--LDGTQEIS 97 >gi|293192791|ref|ZP_06609686.1| ribosome-associated GTPase EngA [Actinomyces odontolyticus F0309] gi|292820038|gb|EFF79036.1| ribosome-associated GTPase EngA [Actinomyces odontolyticus F0309] Length = 517 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 50/88 (56%), Gaps = 7/88 (7%) Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250 +V+ ++L ++ ++S + G ++ ++G N GKSSL NALA + +V ++ Sbjct: 235 DVVMEVLPTESAVASALPSG-------GPRRVALVGRPNVGKSSLLNALAGGERVVVNEL 287 Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIR 278 GTTRD + ++L+G DTAGIR Sbjct: 288 AGTTRDPVDELIELDGRSWWFVDTAGIR 315 Score = 43.1 bits (100), Expect = 0.081, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 10/89 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+L N + + A+V D PG TRD ++ + G + DT G Sbjct: 84 LAVVGRPNVGKSTLVNRILGRREAVVQDTPGVTRDRVSYPAEWAGRDFTLVDTGGWE--- 140 Query: 282 DIVEKEGIKRTFLE-----VENADLILLL 305 ++ +G+ R+ E V+ AD ++L+ Sbjct: 141 --IDVKGLDRSVAEQAEIAVDLADAVVLV 167 >gi|223986781|ref|ZP_03636764.1| hypothetical protein HOLDEFILI_04087 [Holdemania filiformis DSM 12042] gi|223961245|gb|EEF65774.1| hypothetical protein HOLDEFILI_04087 [Holdemania filiformis DSM 12042] Length = 382 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 49/171 (28%), Positives = 83/171 (48%), Gaps = 23/171 (13%) Query: 221 KIVILGHSNAGKSSLFNAL-------AKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKIS 272 ++ ++G+SNAGKSSL NAL K VA + T D T + L G + +S Sbjct: 195 RVCLIGYSNAGKSSLMNALLSLRSISPAKQVASADQLFATL-DSATRRIKLAGRAEMLLS 253 Query: 273 DTAG-IRETDDIVEKEGIKRTFLEVENADLIL-LLKEINSKKEIS-----------FPKN 319 DT G +R+ D + + + T E++ ADL++ ++ + + E+ + Sbjct: 254 DTVGFVRDLPDFL-LDAFESTLQEIQEADLLMEVIDASDPQWELQHEIVMRTLHRLHAAH 312 Query: 320 IDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370 ID + I K+D + + L+S TG+GL+ELI + S L+ + P Sbjct: 313 IDRMRIYNKADQVPQWDRKDGLLLSCLTGQGLQELIAGLISRLNLTDRAFP 363 >gi|209885224|ref|YP_002289081.1| GTP-binding proten HflX [Oligotropha carboxidovorans OM5] gi|209873420|gb|ACI93216.1| GTP-binding proten HflX [Oligotropha carboxidovorans OM5] Length = 437 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 54/177 (30%), Positives = 83/177 (46%), Gaps = 31/177 (17%) Query: 217 RNGYKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDT 274 R Y++V L G++NAGKS+LFN L + DV D+ T D L L G ISDT Sbjct: 200 RVPYRVVALVGYTNAGKSTLFNRLTRADVQ-AADMLFATLDPTLRALRLPHGGKAMISDT 258 Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF----IGTKS- 329 G + + T EV AD+IL +++I+ + + +++D + IGT+S Sbjct: 259 VGFISDLPTMLVAAFRATLEEVIEADVILHVRDISHEDAEAQERDVDHVLRQLGIGTESG 318 Query: 330 ----------DLYSTYTEE----------YDH---LISSFTGEGLEELINKIKSILS 363 D +S E DH L+S+ TGEG++ L+ I+ L+ Sbjct: 319 HRIIEVWNKIDCFSPEERENLARIAARRPADHPCFLVSAETGEGIDALLAAIEERLA 375 >gi|85057390|ref|YP_456306.1| GTP-binding protein Era [Aster yellows witches'-broom phytoplasma AYWB] gi|84789495|gb|ABC65227.1| GTP-binding protein Era [Aster yellows witches'-broom phytoplasma AYWB] Length = 295 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 2/87 (2%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRET 280 I ILG N GKS+L NAL ++ VAI + P TTR+ ++ I D + + DT GI + Sbjct: 12 IAILGRPNVGKSTLLNALTQQKVAITSAKPQTTRNKIIGICHDSNAQYIFV-DTPGINQY 70 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE 307 ++ ++ F +++ DLIL L + Sbjct: 71 KHLLNQKMNNIVFQSIKDVDLILFLTD 97 >gi|301647089|ref|ZP_07246913.1| conserved hypothetical protein [Escherichia coli MS 146-1] gi|301074750|gb|EFK89556.1| conserved hypothetical protein [Escherichia coli MS 146-1] Length = 290 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 40/108 (37%), Positives = 57/108 (52%), Gaps = 4/108 (3%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L IS HI + L ++ R+ I+G S AGKSSL NAL + +V V+D+ TR+V Sbjct: 17 LPYPISRHILE-HLRKLTRHEPVPGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 75 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305 L G+ + I+D G+ E+ D E E + R L DL+L L Sbjct: 76 RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 121 >gi|225619005|ref|YP_002720231.1| GTP-binding protein [Brachyspira hyodysenteriae WA1] gi|225213824|gb|ACN82558.1| GTP-binding protein [Brachyspira hyodysenteriae WA1] Length = 397 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 35/89 (39%), Positives = 52/89 (58%), Gaps = 2/89 (2%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276 N I I G NAGKSS+ NA+A + +AIV+D GTT D + +++ G I DTAG Sbjct: 11 NRTHIAIFGRRNAGKSSIINAIANQYIAIVSDTAGTTTDPVKKAIEINGIGACVIVDTAG 70 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL 305 + D+ I+RT +E++D+ LL+ Sbjct: 71 FDDEGDLGALR-IERTKKIMESSDIALLV 98 >gi|126657428|ref|ZP_01728587.1| GTP-binding protein Era [Cyanothece sp. CCY0110] gi|126621415|gb|EAZ92127.1| GTP-binding protein Era [Cyanothece sp. CCY0110] Length = 314 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 48/173 (27%), Positives = 73/173 (42%), Gaps = 26/173 (15%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 I+G N GKS+L N L + +AI + + TTR+ L L E + DT GI + Sbjct: 27 IIGRPNVGKSTLMNQLIGQKIAITSPVSQTTRNRLQGILTTEQAQIIFVDTPGIHKPHHT 86 Query: 284 VEKEGIKRTFLEVENADLILLLKEINSK------------KEISFPKNIDFIFIGTKSDL 331 + K +K + + + D+IL + + + K K I+ P + +S+ Sbjct: 87 LGKIIVKNAKMAINSVDVILFVVDSSVKSGGGDRYIIDLLKTINQPVILGLNKQDQQSED 146 Query: 332 YSTYTEEYDHLISSF----------TGEGLEELINKIKSILSNKFKKLPFSIP 374 Y E Y +LI S+ TG GLE L N L K P+ P Sbjct: 147 YQQIDESYTNLIESYHWPIIKFSALTGNGLETLQNT----LIEKLDPGPYYYP 195 >gi|329114596|ref|ZP_08243355.1| GTP-binding protein EngA [Acetobacter pomorum DM001] gi|326696076|gb|EGE47758.1| GTP-binding protein EngA [Acetobacter pomorum DM001] Length = 479 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 34/59 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +VI G N GKS+LFN L + A+V D PG TRD + G V++ DTAG+ E Sbjct: 22 VVIAGRPNVGKSTLFNRLVGRRQALVADTPGVTRDRKEGVALIRGRYVRLIDTAGLEEA 80 Score = 43.1 bits (100), Expect = 0.079, Method: Compositional matrix adjust. Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G NAGKS+L NAL ++ I G TRD + + L +I DTAG+R+ Sbjct: 214 RVAIVGRPNAGKSTLMNALLGEERMITGPEAGLTRDSIAVTLRDGDDTFEIVDTAGLRKK 273 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLL 305 D+ +EK + ++ A++ +L+ Sbjct: 274 ARIDESLEKMSVSAAIEALKMAEVAVLV 301 >gi|205373827|ref|ZP_03226629.1| GTP-binding protein EngA [Bacillus coahuilensis m4-4] Length = 262 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 28/59 (47%), Positives = 35/59 (59%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 K ++G N GKSSL NA+ +D IV+DI GTTRD + G I DTAGIR+ Sbjct: 177 KFSLIGRPNVGKSSLVNAILGEDRVIVSDIEGTTRDAIDSIFTFNGSPYVIIDTAGIRK 235 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS++FN + + ++IV D+PG TRD + + + I DT GI D Sbjct: 6 IAIVGRPNVGKSTIFNRIVGERISIVEDVPGVTRDRIYSSGEWLNHEFNIIDTGGIEIGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + ++ ++ + ++ AD+I+ + Sbjct: 66 EPFLEQIRQQAEIAIDEADVIIFM 89 >gi|118595142|ref|ZP_01552489.1| ferrous iron transport protein B [Methylophilales bacterium HTCC2181] gi|118440920|gb|EAV47547.1| ferrous iron transport protein B [Methylophilales bacterium HTCC2181] Length = 581 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 3/92 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI +LG N GKS+LFN ++ A V + PG T D+ ++ L G L ++ D GI + Sbjct: 3 KIALLGMPNTGKSTLFNQISGSS-AKVGNWPGITVDLYSVKTLLNGQLTELIDLPGIYDL 61 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKK 312 E E + TFL+ D +L + INS + Sbjct: 62 KGYSEDEKVVHTFLDKNKIDQVLFV--INSTQ 91 >gi|281358827|ref|ZP_06245299.1| small GTP-binding protein [Victivallis vadensis ATCC BAA-548] gi|281314695|gb|EFA98736.1| small GTP-binding protein [Victivallis vadensis ATCC BAA-548] Length = 414 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 6/88 (6%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRE 279 +I + G +N+GKSS N +A +DVAI + +PGTT DV+ ++L V DTAG+ Sbjct: 11 QIAVAGRTNSGKSSFLNLIAGQDVAITSPVPGTTTDVVEKPMELRPLGPVLFLDTAGV-- 68 Query: 280 TDDIVEKEG--IKRTFLEVENADLILLL 305 DD G ++R+ AD++LL+ Sbjct: 69 -DDETALGGRRVERSERAFNRADVLLLV 95 >gi|303326575|ref|ZP_07357018.1| GTP-binding protein Era [Desulfovibrio sp. 3_1_syn3] gi|302864491|gb|EFL87422.1| GTP-binding protein Era [Desulfovibrio sp. 3_1_syn3] Length = 307 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 35/105 (33%), Positives = 56/105 (53%), Gaps = 3/105 (2%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R G+ + ++G NAGKS+L NAL + V IVT P TTR+ + L E V DT G Sbjct: 7 RCGW-VALMGPPNAGKSTLLNALLGQKVTIVTPKPQTTRNQIVGILTDEEAQVIFMDTPG 65 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNID 321 + + + K I+ + + AD+I+ + ++S I P+ +D Sbjct: 66 LTQVRGRLSKTMIQAVWQSLGQADVIMPI--LDSHLYIRHPEFLD 108 >gi|237800048|ref|ZP_04588509.1| GTP-binding protein Der [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022903|gb|EGI02960.1| GTP-binding protein Der [Pseudomonas syringae pv. oryzae str. 1_6] Length = 222 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 48/84 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS++FN L + AIV D+ G TRD + +G + DT GI + Sbjct: 5 IALVGRPNVGKSTMFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYILIDTGGISGDE 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++++ +++ L +E AD++L L Sbjct: 65 HGMDEKMAEQSLLAIEEADVVLFL 88 >gi|51246791|ref|YP_066675.1| GTP-binding protein (EngA) [Desulfotalea psychrophila LSv54] gi|50877828|emb|CAG37668.1| Probable GTP-binding protein (EngA) [Desulfotalea psychrophila LSv54] Length = 446 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 36/111 (32%), Positives = 59/111 (53%), Gaps = 4/111 (3%) Query: 199 LKNDISSHISQGKLGEIIRNG-YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257 L + +S I + + + +G K+ G N GKSS+ N + +D IV++I GTTRD Sbjct: 160 LMDALSETIEASTMSQDLPDGTVKVAFFGRPNVGKSSMINRILGEDRMIVSEISGTTRDS 219 Query: 258 LTIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLL 305 + L Y + DTAGIR +T + +EK I ++ +E D+ ++L Sbjct: 220 VDTLLTHGNYSYLLIDTAGIRRKGKTTEKLEKFSILKSLGALERCDVAVIL 270 Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust. Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 1/87 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET- 280 + ++G N GKS+LFN + K A+V PG TRD + + + DT GI + Sbjct: 9 VALVGRPNVGKSTLFNRITKSRNALVDPTPGVTRDRQYERVVWNNRAMILVDTGGIDDNP 68 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE 307 +D++ + +E AD++L L + Sbjct: 69 EDVLVPHIRDQALAAIEEADIVLFLMD 95 >gi|293363515|ref|ZP_06610271.1| GTP-binding protein Era [Mycoplasma alligatoris A21JP2] gi|292552864|gb|EFF41618.1| GTP-binding protein Era [Mycoplasma alligatoris A21JP2] Length = 290 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 30/82 (36%), Positives = 46/82 (56%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 I+G N GKSSL NA+ +++IVT P TTRD + + EGY V +DT GI + + Sbjct: 8 IIGRPNVGKSSLLNAILSYNLSIVTATPQTTRDQIMGVYNEEGYQVIFTDTPGIHKPINK 67 Query: 284 VEKEGIKRTFLEVENADLILLL 305 + K + ++ DL++ L Sbjct: 68 LGDALNKNAYDTLKENDLVIFL 89 >gi|281206920|gb|EFA81104.1| GTP-binding protein engA [Polysphondylium pallidum PN500] Length = 795 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 36/99 (36%), Positives = 57/99 (57%), Gaps = 5/99 (5%) Query: 212 LGEIIRN-GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID-LDLEGYLV 269 LG+ +N KI I+G NAGKSSL N + ++ AIV+D+ GTT D + L E + + Sbjct: 290 LGDPQQNTSIKISIVGQPNAGKSSLLNQIIGEERAIVSDVAGTTHDPVDCQFLWRENHDL 349 Query: 270 KISDTAGIRE--TDDI-VEKEGIKRTFLEVENADLILLL 305 + DTAGIR T + +EK + +E + ++L++ Sbjct: 350 TLIDTAGIRRRSTHKVGLEKSSVLWAMKAIERSQVVLMV 388 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 1/57 (1%) Query: 222 IVILGHSNAGKSSLFNALAKK-DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 I I+G N GKS+LFN + + A+V +IPGTTRD D L G ++ DT G+ Sbjct: 114 IAIIGKPNVGKSTLFNRVVQGGRQALVENIPGTTRDRYYSDAFLYGRQFQLVDTGGL 170 >gi|189182921|ref|YP_001936706.1| GTP-binding protein Era [Orientia tsutsugamushi str. Ikeda] gi|189179692|dbj|BAG39472.1| GTP-binding protein Era [Orientia tsutsugamushi str. Ikeda] Length = 306 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 75/158 (47%), Gaps = 20/158 (12%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 ILG N+GKS+L N L + ++IVT TTR +T + + DT GI + Sbjct: 19 ILGMPNSGKSTLLNRLIGQKISIVTPKVQTTRSAITGIVTYNLTQLIFIDTPGIFQPKKT 78 Query: 284 VEKEGIKRTFLEVENADLILLL----KEINSKKEISFPK----NIDFIFIGTKSDL-YST 334 +EK ++ + + AD+ LL+ K++N + +I + I F I K D+ + Sbjct: 79 LEKAMVRCAWTSIVGADIALLIIDITKKLNEQIQIILTRLISQKIKFCIILNKIDICVNN 138 Query: 335 YTEEYDHL-----------ISSFTGEGLEELINKIKSI 361 T+ + L IS+ G G++EL+ I +I Sbjct: 139 LTQLMNDLKQLSINAKIIAISALNGNGVQELLQYISTI 176 >gi|258542805|ref|YP_003188238.1| GTP-binding protein EngA [Acetobacter pasteurianus IFO 3283-01] gi|256633883|dbj|BAH99858.1| GTP-binding protein EngA [Acetobacter pasteurianus IFO 3283-01] gi|256636942|dbj|BAI02911.1| GTP-binding protein EngA [Acetobacter pasteurianus IFO 3283-03] gi|256639995|dbj|BAI05957.1| GTP-binding protein EngA [Acetobacter pasteurianus IFO 3283-07] gi|256643051|dbj|BAI09006.1| GTP-binding protein EngA [Acetobacter pasteurianus IFO 3283-22] gi|256646106|dbj|BAI12054.1| GTP-binding protein EngA [Acetobacter pasteurianus IFO 3283-26] gi|256649159|dbj|BAI15100.1| GTP-binding protein EngA [Acetobacter pasteurianus IFO 3283-32] gi|256652146|dbj|BAI18080.1| GTP-binding protein EngA [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655203|dbj|BAI21130.1| GTP-binding protein EngA [Acetobacter pasteurianus IFO 3283-12] Length = 472 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 34/59 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +VI G N GKS+LFN L + A+V D PG TRD + G V++ DTAG+ E Sbjct: 15 VVIAGRPNVGKSTLFNRLVGRRQALVADTPGVTRDRKEGVALIRGRYVRLIDTAGLEEA 73 Score = 43.5 bits (101), Expect = 0.073, Method: Compositional matrix adjust. Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G NAGKS+L NAL ++ I G TRD + + L +I DTAG+R+ Sbjct: 207 RVAIVGRPNAGKSTLMNALLGEERMITGPEAGLTRDSIAVTLKDGDDTFEIVDTAGLRKK 266 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLL 305 D+ +EK + ++ A++ +L+ Sbjct: 267 ARIDESLEKMSVSAAIEALKMAEVAVLV 294 >gi|271964501|ref|YP_003338697.1| GTP-binding protein [Streptosporangium roseum DSM 43021] gi|270507676|gb|ACZ85954.1| GTP-binding protein [Streptosporangium roseum DSM 43021] Length = 472 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 34/94 (36%), Positives = 50/94 (53%), Gaps = 5/94 (5%) Query: 188 SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIV 247 SS ++L+ IL D Q + G + R ++ ++G N GKSSL N LA ++ +V Sbjct: 181 SSGDLLDVIL----DKLPETPQQRFG-VERGPRRVALVGKPNVGKSSLLNKLAGEERVLV 235 Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + GTTRD + + L G + DTAGIR D Sbjct: 236 DPMAGTTRDPVDELIQLGGKTWRFVDTAGIRRRD 269 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 31/55 (56%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 + ++G N GKS+L N + + A+V D+PG TRD +T D G + DT G Sbjct: 36 VAVVGRPNVGKSTLVNRIIGRREAVVEDVPGVTRDRVTYDATWRGRRFTVVDTGG 90 >gi|160880220|ref|YP_001559188.1| small GTP-binding protein [Clostridium phytofermentans ISDg] gi|160428886|gb|ABX42449.1| small GTP-binding protein [Clostridium phytofermentans ISDg] Length = 416 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 34/86 (39%), Positives = 56/86 (65%), Gaps = 4/86 (4%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGIRE 279 I I G NAGKSSL NAL +++AIV+D+ GTT D + T++L G +V I DT G + Sbjct: 14 IGIFGKRNAGKSSLLNALTGQNIAIVSDVLGTTTDPVLKTMELLPLGPVVFI-DTPGF-D 71 Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305 D ++ K+ ++++F + +L+L++ Sbjct: 72 DDSLLGKDRVEKSFQMLRKTNLVLVI 97 >gi|254499341|ref|ZP_05112012.1| GTP-binding protein EngA [Legionella drancourtii LLAP12] gi|254351446|gb|EET10310.1| GTP-binding protein EngA [Legionella drancourtii LLAP12] Length = 468 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 3/95 (3%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 + KI G N GKS+L N + ++ +V D+PGTTRD + I + + DTAG+ Sbjct: 173 DAIKIAFAGRPNVGKSTLINRILGEERVVVYDMPGTTRDSIAIPFVRDEQRYILIDTAGV 232 Query: 278 RET---DDIVEKEGIKRTFLEVENADLILLLKEIN 309 R D+ +EK + +T ++ +++ L L + N Sbjct: 233 RRKSRIDEKIEKFSVIKTLQAIKESNVCLQLLDAN 267 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 42/84 (50%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L K A+V D PG TRD + DT GI D Sbjct: 5 IALVGRPNVGKSTLFNRLTKTQDALVADFPGLTRDRQYGQAQHNEKSYIVVDTGGIGVDD 64 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 V+ K++ + + AD++L L Sbjct: 65 IAVDSLMSKQSTIALNEADIVLFL 88 >gi|220931435|ref|YP_002508343.1| Ferrous iron transport protein FeoB [Halothermothrix orenii H 168] gi|219992745|gb|ACL69348.1| Ferrous iron transport protein FeoB [Halothermothrix orenii H 168] Length = 173 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 2/90 (2%) Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274 I N K+ ++G N GKS +FN L A+V++ PGTT ++ T + +EG +V++ DT Sbjct: 7 ITTNDKKVYLVGSPNVGKSVIFNYLTD-SYALVSNYPGTTVELSTGKILIEGQVVRLIDT 65 Query: 275 AGIRETD-DIVEKEGIKRTFLEVENADLIL 303 GI I E+E + R L N DL++ Sbjct: 66 PGIYSLYFPISEEEKVTRKVLMTGNPDLVI 95 >gi|327399427|ref|YP_004340296.1| GTP-binding protein engA [Hippea maritima DSM 10411] gi|327182056|gb|AEA34237.1| GTP-binding protein engA [Hippea maritima DSM 10411] Length = 434 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 21/36 (58%), Positives = 29/36 (80%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 K+ I+G N GKS+LFNAL KK+ +++ D+PGTTRD Sbjct: 3 KVAIVGKPNVGKSTLFNALVKKNKSLILDMPGTTRD 38 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 KI I G SN GKSSL NA+ ++ ++V+D GTT D + + DTAGIR Sbjct: 169 KIAITGRSNVGKSSLINAILGENRSVVSDKIGTTTDSIDTPFIYNSNCYLLIDTAGIRKK 228 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305 +T ++K +F ++ +D+ + L Sbjct: 229 AKTKKAIDKLSSIFSFFAIDRSDICVFL 256 >gi|323340745|ref|ZP_08080997.1| ribosome-associated GTPase EngA [Lactobacillus ruminis ATCC 25644] gi|323091868|gb|EFZ34488.1| ribosome-associated GTPase EngA [Lactobacillus ruminis ATCC 25644] Length = 436 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 26/87 (29%), Positives = 48/87 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN +A + ++IV D PG TRD + + G + DT GI D Sbjct: 6 VAIVGRPNVGKSTVFNRIAGERISIVEDTPGVTRDRIYARSEWMGQAFNLIDTGGIDIGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI 308 + + ++ + ++ AD+I+ + + Sbjct: 66 EPFVTQITEQAEIAIDEADVIVFVTSV 92 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 4/96 (4%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKIS 272 E I + K +G N GKSSL NA+ ++ IV++I GTTRD + E G + + Sbjct: 169 EEIDDSIKFSFIGRPNVGKSSLVNAILGENRVIVSNIEGTTRDAIDTKFTTEDGSVYTMI 228 Query: 273 DTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305 DTAGIR+ + EK + R ++ +D++ ++ Sbjct: 229 DTAGIRKKGKVYENTEKYSVLRAMQAIDRSDVVCVV 264 >gi|114778238|ref|ZP_01453110.1| GTP-binding protein EngA [Mariprofundus ferrooxydans PV-1] gi|114551485|gb|EAU54040.1| GTP-binding protein EngA [Mariprofundus ferrooxydans PV-1] Length = 456 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 3/87 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-- 279 I ++G N GKS+L NA +D +V++I GTTRD + L + V++ DTAG R+ Sbjct: 191 IAVIGRPNVGKSTLINAWLGRDRMVVSEIAGTTRDAIDSMLPFQDGFVRLVDTAGQRKHG 250 Query: 280 -TDDIVEKEGIKRTFLEVENADLILLL 305 D++E + AD+ ++L Sbjct: 251 RISDVIEFVARVKAVQAFRMADVAVML 277 Score = 43.5 bits (101), Expect = 0.074, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 45/88 (51%), Gaps = 1/88 (1%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDD 282 I+G N GKS+LFN L AIV D PG T D L + L V + DT GI E T D Sbjct: 19 IVGRPNVGKSTLFNRLIGVRKAIVGDRPGVTVDRLESEFMLGDRHVILVDTGGIGEGTHD 78 Query: 283 IVEKEGIKRTFLEVENADLILLLKEINS 310 I++ + +E AD+++ + S Sbjct: 79 IMQPAIDIQVDAALEIADIVIFTVDAQS 106 >gi|329939204|ref|ZP_08288578.1| GTP-binding protein EngA [Streptomyces griseoaurantiacus M045] gi|329302089|gb|EGG45982.1| GTP-binding protein EngA [Streptomyces griseoaurantiacus M045] Length = 513 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 38/59 (64%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 +I ++G N GKSSL N +A ++ +V ++ GTTRD + ++L G K DTAGIR+ Sbjct: 251 RIALIGRPNVGKSSLLNKVAGEERVVVNELAGTTRDPVDELIELGGVTWKFVDTAGIRK 309 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/84 (28%), Positives = 43/84 (51%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+L N + + A+V D PG TRD +T + + G K+ DT G + Sbjct: 76 LAVVGRPNVGKSTLVNRIIGRREAVVEDKPGVTRDRVTYEAEWAGRRFKVVDTGGWEQDV 135 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + +E AD ++ + Sbjct: 136 LGIDASVAAQAEYAIEAADAVVFV 159 >gi|319941433|ref|ZP_08015761.1| small GTP-binding protein domain:GTP-binding:GTP-binding protein Era [Sutterella wadsworthensis 3_1_45B] gi|319805053|gb|EFW01883.1| small GTP-binding protein domain:GTP-binding:GTP-binding protein Era [Sutterella wadsworthensis 3_1_45B] Length = 360 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 71/273 (26%), Positives = 116/273 (42%), Gaps = 53/273 (19%) Query: 163 DKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKND--------ISSHISQGKLGE 214 D L + EAD +E+ + ++ DI K D + +S K+ E Sbjct: 3 DDLKNFEKAPEADTPQTEDPTTLEMPTDDLEADIEPGKPDDDFERMLAQAGALSSAKVPE 62 Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD----VLTID------LDL 264 R GY + ++G N GKS+L NA+ + V+I + P TTR+ VLT D +D Sbjct: 63 GFRCGY-VAVVGRPNVGKSTLINAIVGEKVSITSKKPQTTRNRVLGVLTTDQAQFIFVDT 121 Query: 265 EGYLVKISDTAGIR----------ETDDIV---EKEGIKRTFLEV------ENADLILLL 305 G+ K+ + R E D +V E G K LEV E +++IL + Sbjct: 122 PGFQTKVKNQLTRRMNRSVRSTLSEVDAVVMVIESNGWKPGDLEVLRLLPTEASNVILAV 181 Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365 SK ++S +N + +D Y +S+ L++L+ +I+ + Sbjct: 182 ----SKTDLSKDRN---ALLPLMADSMRRYPFAAIVPVSAEKHRQLDDLLREIEKL---- 230 Query: 366 FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEK 398 LP SIP LY ++ R+L ++ EK Sbjct: 231 ---LPESIPYFDPDLYT-DKSPRFLAAETIREK 259 >gi|315290912|gb|EFU50281.1| conserved hypothetical protein [Escherichia coli MS 153-1] Length = 251 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 34/89 (38%), Positives = 49/89 (55%), Gaps = 3/89 (3%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 I+G S AGKSSL NAL + +V V+D+ TR+V L GY + I+D G+ E+ D Sbjct: 2 IMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQRFRLSGHGYSMVITDLPGVGESRDR 61 Query: 284 -VEKEGIKRTFLEVENADLILLLKEINSK 311 E E + R L DL+L L + + + Sbjct: 62 DAEYEALYRDIL--PELDLVLWLIKADDR 88 >gi|148284268|ref|YP_001248358.1| GTP-binding protein Era [Orientia tsutsugamushi str. Boryong] gi|146739707|emb|CAM79520.1| GTP-binding protein [Orientia tsutsugamushi str. Boryong] Length = 306 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 75/158 (47%), Gaps = 20/158 (12%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 ILG N+GKS+L N L + ++IVT TTR +T + + DT GI + Sbjct: 19 ILGMPNSGKSTLLNRLIGQKISIVTPKVQTTRSAITGIVTYNLTQLIFIDTPGIFQPKKT 78 Query: 284 VEKEGIKRTFLEVENADLILLL----KEINSKKEISFPK----NIDFIFIGTKSDL-YST 334 +EK ++ + + AD+ LL+ K++N + +I + I F I K D+ + Sbjct: 79 LEKAMVRCAWTSIVGADIALLIIDITKKLNEQIQIILTRLISQKIKFCIILNKIDIGLNN 138 Query: 335 YTEEYDHL-----------ISSFTGEGLEELINKIKSI 361 T+ + L IS+ G G++EL+ I +I Sbjct: 139 LTQLMNDLKQLSINAKIIAISALNGNGVQELLQYISTI 176 >gi|222055346|ref|YP_002537708.1| ferrous iron transport protein B [Geobacter sp. FRC-32] gi|221564635|gb|ACM20607.1| ferrous iron transport protein B [Geobacter sp. FRC-32] Length = 663 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 1/83 (1%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ ++G+ N GKS LFNAL V V++ PGT+ +V + G + +I DT G+ Sbjct: 23 KVALVGNPNVGKSVLFNALTGAYVT-VSNYPGTSVEVARGSASINGEVCEIIDTPGMYSL 81 Query: 281 DDIVEKEGIKRTFLEVENADLIL 303 I E+E + R L E+ D++L Sbjct: 82 LPITEEERVAREILLKESPDVVL 104 >gi|118579211|ref|YP_900461.1| ferrous iron transport protein B [Pelobacter propionicus DSM 2379] gi|118501921|gb|ABK98403.1| ferrous iron transport protein B [Pelobacter propionicus DSM 2379] Length = 665 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 1/83 (1%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++V++G+ N GKS LFNAL V V++ PGT+ +V + ++G ++ DT G+ Sbjct: 20 RVVLVGNPNVGKSVLFNALTGAYVT-VSNYPGTSVEVSRGNATIQGRSWQVIDTPGMYSI 78 Query: 281 DDIVEKEGIKRTFLEVENADLIL 303 I E+E + R + E D++L Sbjct: 79 HTITEEERVAREIILHETPDVVL 101 >gi|317490529|ref|ZP_07949007.1| GTP-binding protein Era [Eggerthella sp. 1_3_56FAA] gi|316910380|gb|EFV32011.1| GTP-binding protein Era [Eggerthella sp. 1_3_56FAA] Length = 307 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 44/174 (25%), Positives = 85/174 (48%), Gaps = 26/174 (14%) Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 +G+ ++G+ + ++G NAGKS+L NA+ K +AI ++ TTR L EG+ + + Sbjct: 8 VGDSFKSGF-VTLVGRPNAGKSTLINAIMGKKIAITSNTAQTTRHRFRAALTREGFQLIL 66 Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILL------------------LKEINSKKE 313 DT G+ + D + +E +E+ D++ LK SKK Sbjct: 67 VDTPGLHKPHDALGEELNTSALKALEDVDVVAFLVDASKPVGTGDEWVAAQLKRARSKKI 126 Query: 314 ISFPKNIDFIFIGTKSD---LYSTYTEEYDHLI--SSFTGEGLEELINKIKSIL 362 + K ID + G + D + ++D ++ SS TGE +++ ++++ ++L Sbjct: 127 LVLSK-IDLV-DGEQLDRQRFAAAQLGDWDAVVELSSQTGEHVQDFVDEVVALL 178 >gi|225156498|ref|ZP_03724833.1| small GTP-binding protein [Opitutaceae bacterium TAV2] gi|224802927|gb|EEG21174.1| small GTP-binding protein [Opitutaceae bacterium TAV2] Length = 526 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 2/86 (2%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--E 279 + I+G N GKS LFN LA++ ++IV D PG TRDV++ + Y + + G++ E Sbjct: 5 VAIVGRPNVGKSRLFNRLARRRISIVHDQPGVTRDVISTQIASGAYTLLDTGGLGLKGGE 64 Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305 T + ++ ++ +DLIL + Sbjct: 65 TTAELTAASERQVDFAIDTSDLILFV 90 Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust. Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 8/92 (8%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK-----ISDTAG 276 + +G N GKSSL N L + D IV+++PGTTRD + + G K + D G Sbjct: 202 VCFIGRPNVGKSSLGNRLLQSDRLIVSNVPGTTRDAVELPFTFRGREHKEHPFLLIDIGG 261 Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLL 305 I+ + VE R+ ++ AD++ L+ Sbjct: 262 IKAATKLASPVEYFSRLRSLDAIQRADVVFLV 293 >gi|126460749|ref|YP_001057027.1| small GTP-binding protein [Pyrobaculum calidifontis JCM 11548] gi|126250470|gb|ABO09561.1| small GTP-binding protein [Pyrobaculum calidifontis JCM 11548] Length = 385 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 59/200 (29%), Positives = 92/200 (46%), Gaps = 43/200 (21%) Query: 199 LKNDISSHISQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257 ++ + + HI + K R+G ++VI G+++AGK++LFN L +D +V P T + Sbjct: 169 VRKNRAMHIQRRK-----RSGVPEVVITGYTSAGKTTLFNRLTNED-KLVDGRPFATLET 222 Query: 258 LTIDLDLEGYLVKISDTAGIRETDDIVE--KEGIKRTFLEVENADLILL----------- 304 + LDL G V I+DT G DD+ E T EV AD++LL Sbjct: 223 YSRALDLWGKRVVITDTIGF--IDDLPPFLIESFHSTLQEVTEADVVLLVVDGSDPPGEL 280 Query: 305 ----------LKEINSKKEISFP--KNIDFIFIGTKSDLYSTYTEEYDHL--ISSFTGEG 350 L E+ ++ P +D I IG +L S + + IS+ TG G Sbjct: 281 SRKLETSMETLGEVGVSRDRVIPVVNKVDRIGIGRVRELRSVLAKYFTWFIPISALTGFG 340 Query: 351 LEELINKIKSILSNKFKKLP 370 +E L K++L F K+P Sbjct: 341 IEAL----KAVL---FFKVP 353 >gi|313801893|gb|EFS43127.1| GTP-binding protein HflX [Propionibacterium acnes HL110PA2] gi|314962812|gb|EFT06912.1| GTP-binding protein HflX [Propionibacterium acnes HL082PA1] Length = 493 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 55/190 (28%), Positives = 89/190 (46%), Gaps = 32/190 (16%) Query: 211 KLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLE 265 K + IRN + I+G++NAGKSSL N L + V A+ + TTR T D Sbjct: 263 KRADRIRNKVPSVAIVGYTNAGKSSLLNRLTRAGVLVENALFATLDPTTRRATTSD---- 318 Query: 266 GYLVKISDTAG-IRE-TDDIV-------EKEGIKRTFLEVENADLILLLKEINSKK---- 312 G + ++DT G +R D+V E+ + L V +AD L ++++ + Sbjct: 319 GRVYTLTDTVGFVRHLPHDLVEAFASTLEETAMAEVLLHVVDADDPDPLGQVDAVRGVLS 378 Query: 313 --------EISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364 EI ID + T L ST+ Y L+S+ TGEG+++L+ I++ L Sbjct: 379 GIGASNIPEILVLNKIDRLSDETILTLRSTFPGAY--LVSAHTGEGIDKLVEAIEAGLPI 436 Query: 365 KFKKLPFSIP 374 +++ IP Sbjct: 437 PSQRVDVVIP 446 >gi|39936158|ref|NP_948434.1| GTP-binding protein EngA [Rhodopseudomonas palustris CGA009] gi|192291876|ref|YP_001992481.1| GTP-binding protein EngA [Rhodopseudomonas palustris TIE-1] gi|81698158|sp|Q6N586|DER_RHOPA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|229784137|sp|B3Q9V3|DER_RHOPT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|39650013|emb|CAE28536.1| GTP-binding protein [Rhodopseudomonas palustris CGA009] gi|192285625|gb|ACF02006.1| small GTP-binding protein [Rhodopseudomonas palustris TIE-1] Length = 459 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 27/96 (28%), Positives = 54/96 (56%), Gaps = 3/96 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G NAGKS+ N L ++ + + GTTRD + ++++ +G ++ DTAG+R Sbjct: 189 RVAIVGRPNAGKSTFINRLLGEERLLTSPEAGTTRDSIAVEVEWKGRDFRVFDTAGLRRR 248 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKE 313 I +EK + V A++++L+ + ++ E Sbjct: 249 SRIEEKLEKLSVADALRAVRFAEVVVLMMDAQNRFE 284 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 18/161 (11%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 + + I+G N GKS+LFN L + +A+V D PG TRD + L + DTAG+ E Sbjct: 3 FTLAIIGRPNVGKSTLFNRLVGQKLALVDDAPGVTRDRREGEGRLGDLNFTLIDTAGLDE 62 Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISFPK--NIDFIFIGTKSD 330 + ++T +E AD +L + + N + F + N + + KS+ Sbjct: 63 GPKGSLTARMQEQTETAIELADALLFVFDARAGLTPNDRAFADFARRANKPVVLVANKSE 122 Query: 331 LYS---TYTEEY-----DHL-ISSFTGEGLEELINKIKSIL 362 S E Y D + IS+ GEG+ EL + ++ +L Sbjct: 123 GKSGEIGAMESYALGLGDPVQISAEHGEGMGELYDALRPLL 163 >gi|227496096|ref|ZP_03926402.1| bifunctional cytidylate kinase/GTP-binding protein [Actinomyces urogenitalis DSM 15434] gi|226834330|gb|EEH66713.1| bifunctional cytidylate kinase/GTP-binding protein [Actinomyces urogenitalis DSM 15434] Length = 720 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 43/179 (24%), Positives = 83/179 (46%), Gaps = 31/179 (17%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ ++G N GKSSL N++A +V ++ GTTRD + ++L+G DTAGIR Sbjct: 460 RVALVGRPNVGKSSLLNSIAGSQRVVVNELAGTTRDPVDEVIELDGRQWLFIDTAGIRRR 519 Query: 281 DDIVEKEG-----IKRTFLEVENADLILLL---KEINSKKEISFPKNI-----DFIFIGT 327 + + G + RT +E A++ ++L E S++++ + + + + Sbjct: 520 --VKQSRGADYYAVLRTQGAIEKAEVAVVLLDASESVSEQDVRVIQQVVDAGRALVLVNN 577 Query: 328 KSDLYS-------TYTEEYD--------HL-ISSFTGEGLEELINKIKSILSNKFKKLP 370 K DL T+ E+D H+ +++ TG L+ + + L ++P Sbjct: 578 KWDLVDEERQKMLTWETEHDLAHVAWAPHINLAARTGWHTNRLVRALDAALEGWTTRIP 636 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 44/84 (52%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+L N + + VA+V D PG TRD ++ + G I DT G Sbjct: 285 LAVVGRPNVGKSTLVNRVLGRRVAVVQDTPGVTRDRVSYPAEWAGRRFTIVDTGGWELDV 344 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 +++ + + VE AD ++L+ Sbjct: 345 KGLDQAVATQAEVAVELADAVILV 368 >gi|320093654|ref|ZP_08025534.1| ribosome-associated GTPase EngA [Actinomyces sp. oral taxon 178 str. F0338] gi|319979402|gb|EFW10884.1| ribosome-associated GTPase EngA [Actinomyces sp. oral taxon 178 str. F0338] Length = 503 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 4/88 (4%) Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250 ++L+ + + D S+H G ++ ++G N GKSSL NALA +V ++ Sbjct: 218 DLLDAVAAVLPDESAHAPAPPSG----GPRRVALVGRPNVGKSSLLNALAGSSRVVVNEL 273 Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIR 278 GTTRD + ++L+G DTAGIR Sbjct: 274 AGTTRDPVDELIELDGRPWWFVDTAGIR 301 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/171 (22%), Positives = 76/171 (44%), Gaps = 27/171 (15%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+L N + + A+V D PG TRD ++ + G + DT G Sbjct: 70 LAVVGRPNVGKSTLVNRVLGRREAVVQDTPGVTRDRVSYPAEWAGRDFTLVDTGGWE--- 126 Query: 282 DIVEKEGIKRTFLE-----VENADLILLLKEINSKKEISFPKNIDFIFIGTK-----SDL 331 V+ +G+ R+ E V+ AD ++L+ + S + + + K ++ Sbjct: 127 --VDVKGLDRSVAEQAETAVDLADAVVLVLDATVGVTASDERIVTMLRAKRKPVVLAANK 184 Query: 332 YSTYTEEYD------------HLISSFTGEGLEELINKIKSILSNKFKKLP 370 + +E D H +S+ G G+ +L++ + ++L ++ P Sbjct: 185 VDSAVQEADAAYLWGLGMGEPHPVSALHGRGVGDLLDAVAAVLPDESAHAP 235 >gi|300939321|ref|ZP_07153993.1| conserved hypothetical protein [Escherichia coli MS 21-1] gi|300455788|gb|EFK19281.1| conserved hypothetical protein [Escherichia coli MS 21-1] Length = 210 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L +S HI + L ++ + I I+G S AGKSSL NAL + +V V+D+ TR+V Sbjct: 37 LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQ 95 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305 L G+ + I+D G+ E+ D E E + R L DL+L L Sbjct: 96 RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 141 >gi|258591964|emb|CBE68269.1| GTP-binding protein engA [NC10 bacterium 'Dutch sediment'] Length = 439 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 30/98 (30%), Positives = 53/98 (54%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ ++G N GKSSL NAL ++ IV++ GTTRD + + DTAG+R Sbjct: 178 RVTVVGRPNVGKSSLVNALLGQERVIVSEQAGTTRDAIDTPFTYNDTAYILIDTAGLRSR 237 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + +E+ + R +E +D+ L+L +++K I+ Sbjct: 238 SKVQQPLERFSVVRALKAIERSDVALIL--VDAKDGIT 273 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 32/56 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 + I+G N GKS+LFN L AIV D PG TRD L ++ +G + DT G+ Sbjct: 6 VTIVGRPNVGKSTLFNRLVGGRRAIVHDQPGVTRDRLYATVEWKGRAFTLGDTGGL 61 >gi|149204177|ref|ZP_01881145.1| GTP-binding protein EngA [Roseovarius sp. TM1035] gi|149142619|gb|EDM30664.1| GTP-binding protein EngA [Roseovarius sp. TM1035] Length = 488 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 ++ ++G NAGKS+L N + ++ + G TRD +++ +D +G V+I DTAG+R Sbjct: 203 QVAVVGRPNAGKSTLINKILGEERLLTGPEAGITRDAISLRIDWDGMPVRIFDTAGMRKK 262 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305 + D +EK + V+ A+++++L Sbjct: 263 AKVQDKLEKLSVSDGLRAVKFAEVVVVL 290 Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 1/87 (1%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 + + I+G N GKS+LFN L K +A+V + PG TRD+ L + DTAG+ + Sbjct: 3 FSVAIVGRPNVGKSTLFNRLVGKRLALVDNQPGVTRDLREGAARLGDLRFTVIDTAGLED 62 Query: 280 -TDDIVEKEGIKRTFLEVENADLILLL 305 TD+ ++ K T V+ AD+ L + Sbjct: 63 ATDESLQGRMRKLTERAVDMADICLFV 89 >gi|94495668|ref|ZP_01302248.1| Small GTP-binding protein domain [Sphingomonas sp. SKA58] gi|94425056|gb|EAT10077.1| Small GTP-binding protein domain [Sphingomonas sp. SKA58] Length = 456 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 36/86 (41%), Positives = 45/86 (52%), Gaps = 3/86 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+LFN L K +A+V D PG TRD + L G I DTAG E + Sbjct: 5 VAIVGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDRREGEAHLLGLDFTIIDTAGY-EDE 63 Query: 282 DIVEKEGIKRTFLE--VENADLILLL 305 D G R E V+N D+ L L Sbjct: 64 DPQSLPGRMRIQTEAAVDNCDVALFL 89 Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust. Identities = 31/93 (33%), Positives = 49/93 (52%), Gaps = 8/93 (8%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL---EGY--LVKISDTA 275 K+ I+G NAGKS+L N L ++ + G TRD + +D EG V++ DTA Sbjct: 187 KLAIVGRPNAGKSTLINRLLGENRLLTGPEAGITRDSIAVDWSWTSREGLERPVRLIDTA 246 Query: 276 GIR---ETDDIVEKEGIKRTFLEVENADLILLL 305 G+R + D +EK + V A++++LL Sbjct: 247 GMRKRAKVQDKLEKLAVSDGLNAVNFAEVVVLL 279 >gi|118577285|ref|YP_899525.1| ferrous iron transport protein B [Pelobacter propionicus DSM 2379] gi|118504790|gb|ABL01272.1| ferrous iron transport protein B [Pelobacter propionicus DSM 2379] Length = 664 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 1/94 (1%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KIV++G+ N GKS+LFN L V V++ PGTT +V ++G + DT G+ Sbjct: 22 KIVMVGNPNVGKSALFNRLTGSYVT-VSNYPGTTVEVSQGKCKIDGEEYSVEDTPGMYSL 80 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314 I E+E + R L +D++L + + + K + Sbjct: 81 LPITEEERVSRDILLTGKSDVVLCVVDAKNLKRM 114 >gi|311068799|ref|YP_003973722.1| GTP-binding protein EngA [Bacillus atrophaeus 1942] gi|310869316|gb|ADP32791.1| GTP-binding protein EngA [Bacillus atrophaeus 1942] Length = 436 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 27/94 (28%), Positives = 53/94 (56%), Gaps = 2/94 (2%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN +A + ++IV D PG TRD + + Y + DT GI D Sbjct: 6 VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + + ++ + ++ AD+I+ + +N ++ ++ Sbjct: 66 EPFMTQIRQQAEIAMDEADVIIFM--VNGREGVT 97 Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 3/85 (3%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 ++G N GKSSL NA+ ++ IV+++ GTTRD + I DTAG+R+ + Sbjct: 180 LIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTMFSYNQQDFVIVDTAGMRKKGKV 239 Query: 284 ---VEKEGIKRTFLEVENADLILLL 305 EK + R ++ ++++ ++ Sbjct: 240 YETTEKYSVLRALKAIDRSEVVAVV 264 >gi|307128555|ref|YP_003880585.1| GTP-binding protein Era [Candidatus Sulcia muelleri CARI] gi|306483017|gb|ADM89887.1| GTP-binding protein Era [Candidatus Sulcia muelleri CARI] Length = 270 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 33/95 (34%), Positives = 51/95 (53%), Gaps = 8/95 (8%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 I+G+ N GKS+L NA+ K+++IVT TTR+ + L+L + DT GI I Sbjct: 10 IIGYPNVGKSTLINAIIGKNISIVTYKANTTRNNIIGILNLYNSQIIFYDTPGI-----I 64 Query: 284 VEKEGIKRTFLEVENADLILLLKEINSKKEISFPK 318 + IK+ E AD+++ + EI E+ F K Sbjct: 65 INNNYIKKYITE---ADIVIYITEIGKNNELFFKK 96 >gi|316933671|ref|YP_004108653.1| ribosome-associated GTPase EngA [Rhodopseudomonas palustris DX-1] gi|315601385|gb|ADU43920.1| ribosome-associated GTPase EngA [Rhodopseudomonas palustris DX-1] Length = 458 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 27/96 (28%), Positives = 53/96 (55%), Gaps = 3/96 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G NAGKS+ N L ++ + + GTTRD + +++ +G ++ DTAG+R Sbjct: 188 RVAIVGRPNAGKSTFINRLLGEERLLTSPEAGTTRDSIAVEVQWKGREFRVFDTAGLRRR 247 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKE 313 I +EK + V A++++L+ + ++ E Sbjct: 248 SRIEEKLEKLSVADALRAVRFAEVVVLMMDAQNRFE 283 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 42/161 (26%), Positives = 69/161 (42%), Gaps = 18/161 (11%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 + + I+G N GKS+LFN L + +A+V D PG TRD + L + DTAG+ E Sbjct: 3 FTLAIIGRPNVGKSTLFNRLVGQKLALVDDAPGVTRDRREGEGRLGDLTFTLIDTAGLDE 62 Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEE 338 + ++T +E+AD +L + + + + DF K + E Sbjct: 63 GPKGSLTARMQEQTETAIEHADALLFVIDARAGLTPNDRAFADFARRANKPVVLVANKSE 122 Query: 339 YDH-----------------LISSFTGEGLEELINKIKSIL 362 H IS+ GEGL EL + ++ ++ Sbjct: 123 GKHGEIGAMESYALGLGDPVQISAEHGEGLGELYDALRPLM 163 >gi|302393066|ref|YP_003828886.1| iron-only hydrogenase maturation protein HydF [Acetohalobium arabaticum DSM 5501] gi|302205143|gb|ADL13821.1| iron-only hydrogenase maturation protein HydF [Acetohalobium arabaticum DSM 5501] Length = 411 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 37/87 (42%), Positives = 52/87 (59%), Gaps = 9/87 (10%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDTA 275 N I ILG NAGKSSL NAL +D+A+V+ + GTT D + +++ G +V I DTA Sbjct: 8 NRLHIAILGRRNAGKSSLINALTNQDLAVVSKVAGTTTDPVYKRMEILPIGPVVVI-DTA 66 Query: 276 GIRETDDIVE------KEGIKRTFLEV 296 GI +T ++ + KE + RT L V Sbjct: 67 GIDDTGELGDLRVKKTKEVLGRTDLAV 93 >gi|284054187|ref|ZP_06384397.1| small GTP-binding protein [Arthrospira platensis str. Paraca] Length = 187 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 1/86 (1%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 N + ++G N GKS LFNAL V V++ PGTT D+ T D+ + + I DT G+ Sbjct: 3 NKPTVALVGSPNVGKSVLFNALTSHYVT-VSNYPGTTVDITTGDMIIGDKAIAIIDTPGM 61 Query: 278 RETDDIVEKEGIKRTFLEVENADLIL 303 I E+E + R L DL++ Sbjct: 62 YSLLPITEEEKVGRDLLMTRGIDLVI 87 >gi|260890127|ref|ZP_05901390.1| hypothetical protein GCWU000323_01289 [Leptotrichia hofstadii F0254] gi|260860150|gb|EEX74650.1| GTP-binding protein Era [Leptotrichia hofstadii F0254] Length = 293 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 34/100 (34%), Positives = 56/100 (56%), Gaps = 3/100 (3%) Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 +++G+ I I+G N GKS+L N L K+ VAIV+D GTTRD + +++ DT Sbjct: 1 MKSGF-ITIVGRPNVGKSTLMNKLVKEKVAIVSDKAGTTRDQIKGIVNIGESQFIFVDTP 59 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 GI + ++ + +EN DLI+ + ++ +EIS Sbjct: 60 GIHKPKHLLGEHMTNVALEALENVDLIMFM--LDGTQEIS 97 >gi|224373288|ref|YP_002607660.1| GTP-binding protein Era [Nautilia profundicola AmH] gi|223589409|gb|ACM93145.1| GTP-binding protein Era [Nautilia profundicola AmH] Length = 293 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 47/154 (30%), Positives = 74/154 (48%), Gaps = 19/154 (12%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 ILG NAGKS+L N L + +A+V+ +R + + + + DT G+ E + + Sbjct: 9 ILGKPNAGKSTLLNWLLGEKIALVSPKANASRKRVNAIVMHGDDQIILLDTPGLHEKEKL 68 Query: 284 VEKEGIKRTFLEVENADLILLLKEIN---SKKEISF---PKNIDFIFIGTKSDLYS---- 333 + K +K + ++DL+L L ++ S E KNI I + TK+DL S Sbjct: 69 LNKFMLKEALKALSDSDLVLFLADVRDDLSGYEWFLELNTKNIPHIVVLTKTDLVSEEEV 128 Query: 334 -TYTEEYDHL--------ISSFTGEGLEELINKI 358 EEY L IS+ G+G +EL+N I Sbjct: 129 RKKIEEYKKLGKALDVIPISAVEGKGKDELLNAI 162 >gi|331654127|ref|ZP_08355127.1| conserved hypothetical protein [Escherichia coli M718] gi|331047509|gb|EGI19586.1| conserved hypothetical protein [Escherichia coli M718] Length = 150 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 34/85 (40%), Positives = 47/85 (55%), Gaps = 3/85 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G S AGKSSL NAL + +V V+D+ TR+V L G+ + I+D G+ E+ Sbjct: 52 IGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQRFRLSGHGHSMVITDLPGVGESR 111 Query: 282 DI-VEKEGIKRTFLEVENADLILLL 305 D E E + R L DL+L L Sbjct: 112 DRDAEYEALYRNIL--SELDLVLWL 134 >gi|239621484|ref|ZP_04664515.1| bifunctional cytidylate kinase/GTP-binding protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239515945|gb|EEQ55812.1| bifunctional cytidylate kinase/GTP-binding protein [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 698 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 33/90 (36%), Positives = 52/90 (57%), Gaps = 7/90 (7%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT--IDLDLEGYLVKISDTAGIR 278 ++ ++G N GKSSL N LA+++ A+V D+ GTTRD + +++D E +L DTAGI+ Sbjct: 438 RVALVGRPNVGKSSLLNQLAREERAVVNDLAGTTRDPVDEIVNIDGEDWL--FIDTAGIK 495 Query: 279 ETDDIV---EKEGIKRTFLEVENADLILLL 305 + E RT +E +L L+L Sbjct: 496 RRQHKLTGAEYYSSLRTQAAIERCELALIL 525 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 43/84 (51%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKSSL N + + A+V D PG TRD ++ D + G K+ DT G Sbjct: 264 LAVVGRPNVGKSSLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADV 323 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + +E + + V AD ++ + Sbjct: 324 EGIESAIASQAQVAVTLADAVVFV 347 >gi|296454185|ref|YP_003661328.1| small GTP-binding protein [Bifidobacterium longum subsp. longum JDM301] gi|296183616|gb|ADH00498.1| small GTP-binding protein [Bifidobacterium longum subsp. longum JDM301] Length = 709 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 33/90 (36%), Positives = 52/90 (57%), Gaps = 7/90 (7%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGIR 278 ++ ++G N GKSSL N LA+++ A+V D+ GTTRD + +++D E +L DTAGI+ Sbjct: 449 RVALVGRPNVGKSSLLNQLAREERAVVNDLAGTTRDPVDEIVNIDGEDWL--FIDTAGIK 506 Query: 279 ETDDIV---EKEGIKRTFLEVENADLILLL 305 + E RT +E +L L+L Sbjct: 507 RRQHKLTGAEYYSSLRTQAAIERCELALIL 536 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 43/84 (51%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKSSL N + + A+V D PG TRD ++ D + G K+ DT G Sbjct: 275 LAVVGRPNVGKSSLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADV 334 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + +E + + V AD ++ + Sbjct: 335 EGIESAIASQAQIAVTLADAVVFV 358 >gi|170289148|ref|YP_001739386.1| small GTP-binding protein [Thermotoga sp. RQ2] gi|238688853|sp|B1LBK5|ENGB_THESQ RecName: Full=Probable GTP-binding protein EngB gi|170176651|gb|ACB09703.1| small GTP-binding protein [Thermotoga sp. RQ2] Length = 195 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 76/167 (45%), Gaps = 26/167 (15%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS--DTAGIRE 279 + +G SN GKSSL NAL + VA V+ PG TR + ++ + Y V + A + + Sbjct: 26 VAFVGRSNVGKSSLLNALFNRKVAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSK 85 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPK--NIDFIFIGTKSD- 330 + ++ K ++ F + ++ LL + + I + K NI F + TK D Sbjct: 86 KERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDFMMIEWMKSLNIPFTIVLTKMDK 145 Query: 331 ---------------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362 ++S Y E SS TGEG+ EL++ I ++L Sbjct: 146 VKMSERAKKLEEHRKVFSRYGEYTIIPTSSVTGEGISELLDLISTLL 192 >gi|46191228|ref|ZP_00206719.1| COG1160: Predicted GTPases [Bifidobacterium longum DJO10A] Length = 597 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 26/60 (43%), Positives = 41/60 (68%), Gaps = 4/60 (6%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGIR 278 ++ ++G N GKSSL N LA+++ A+V D+ GTTRD + +++D E +L DTAGI+ Sbjct: 337 RVALVGRPNVGKSSLLNQLAREERAVVNDLAGTTRDPVDEIVNIDGEDWL--FIDTAGIK 394 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 32/55 (58%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 + ++G N GKSSL N + + A+V D PG TRD ++ D + G K+ DT G Sbjct: 163 LAVVGRPNVGKSSLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGG 217 >gi|257126292|ref|YP_003164406.1| GTP-binding protein Era [Leptotrichia buccalis C-1013-b] gi|257050231|gb|ACV39415.1| GTP-binding protein Era [Leptotrichia buccalis C-1013-b] Length = 293 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 34/100 (34%), Positives = 56/100 (56%), Gaps = 3/100 (3%) Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 +++G+ I I+G N GKS+L N L K+ VAIV+D GTTRD + +++ DT Sbjct: 1 MKSGF-ITIVGRPNVGKSTLMNKLVKEKVAIVSDKAGTTRDQIKGIVNIGESQFIFVDTP 59 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 GI + ++ + +EN DLI+ + ++ +EIS Sbjct: 60 GIHKPKHLLGEHMTNVALEALENVDLIMFM--LDGTQEIS 97 >gi|54023981|ref|YP_118223.1| GTP-binding protein EngA [Nocardia farcinica IFM 10152] gi|54015489|dbj|BAD56859.1| putative GTP-binding protein [Nocardia farcinica IFM 10152] Length = 472 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 42/168 (25%), Positives = 74/168 (44%), Gaps = 19/168 (11%) Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272 GE + + ++G N GKS+L N + + A+V DIPG TRD ++ + G + Sbjct: 29 GEAQQAMPTLAVVGRPNVGKSTLVNRILGRREAVVEDIPGVTRDRVSYEATWAGRRFLVQ 88 Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE----INSKKEISFPK----NIDFIF 324 DT G +++ ++ L + AD ILL+ + + E + K I I Sbjct: 89 DTGGWEPDAKGLQQAVARQAELAMATADAILLVVDATVGATATDEAAVKKLRRSQIPVIL 148 Query: 325 IGTKSD----------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362 + K D L+S E ++S+ G G +L++ + +L Sbjct: 149 VANKVDDQRLEAEAAALWSLGLGE-PRMVSAAHGRGTGDLLDDVLEVL 195 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 37/58 (63%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 ++ ++G N GKSSL N LA + ++V D+ GTT D + ++L G + K DTAG+R Sbjct: 210 RVALVGKPNVGKSSLLNKLAGDERSVVHDVAGTTVDPVDSLVELGGKIWKFVDTAGLR 267 >gi|220932765|ref|YP_002509673.1| small GTP-binding protein [Halothermothrix orenii H 168] gi|219994075|gb|ACL70678.1| small GTP-binding protein [Halothermothrix orenii H 168] Length = 411 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 36/92 (39%), Positives = 54/92 (58%), Gaps = 8/92 (8%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTA 275 N I + G N GKS+L N L +++A+V+D+PGTT D + ++L G +V I DTA Sbjct: 8 NRPHIAVFGRRNVGKSTLINTLTNQELALVSDVPGTTTDPVYKSMELLPLGPVVMI-DTA 66 Query: 276 GIRETDDI--VEKEGIKRTFLEVENADLILLL 305 GI DD+ + K IK+T + DL +L+ Sbjct: 67 GI---DDVGSLGKLRIKKTREVIRRTDLAILV 95 >gi|332798243|ref|YP_004459742.1| small GTP-binding protein [Tepidanaerobacter sp. Re1] gi|332695978|gb|AEE90435.1| small GTP-binding protein [Tepidanaerobacter sp. Re1] Length = 397 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 34/90 (37%), Positives = 55/90 (61%), Gaps = 4/90 (4%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDTA 275 N I + G N+GKSSL NA+ +++A+V+D PGTT D + ++L G +V I DTA Sbjct: 8 NRLHIGLFGRRNSGKSSLINAITGQEIALVSDFPGTTTDPVYKAMELLPIGPVVFI-DTA 66 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLL 305 G+ + D+ E IK+T ++ D+ L++ Sbjct: 67 GLDDVGDLGELR-IKKTLEVMDKTDIALVV 95 >gi|255598157|ref|XP_002536940.1| Ferrous iron transport protein B, putative [Ricinus communis] gi|223518039|gb|EEF25443.1| Ferrous iron transport protein B, putative [Ricinus communis] Length = 370 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 29/92 (31%), Positives = 52/92 (56%), Gaps = 3/92 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ +LG N GKS+LFN L+ A V + PG T D+++ + L G++ ++ D G+ + Sbjct: 3 RVALLGMPNTGKSTLFNRLSGAS-ARVGNWPGITVDLMSAKILLGGHIAELVDLPGLYDL 61 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKK 312 + E + R FL DL+L++ +NS + Sbjct: 62 HGFSDDEHVVRHFLSHHAIDLVLII--LNSAQ 91 >gi|161485602|ref|NP_695919.2| bifunctional cytidylate kinase/GTP-binding protein [Bifidobacterium longum NCC2705] gi|317483249|ref|ZP_07942244.1| ribosome-associated GTPase EngA [Bifidobacterium sp. 12_1_47BFAA] gi|316915318|gb|EFV36745.1| ribosome-associated GTPase EngA [Bifidobacterium sp. 12_1_47BFAA] Length = 709 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 33/90 (36%), Positives = 52/90 (57%), Gaps = 7/90 (7%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGIR 278 ++ ++G N GKSSL N LA+++ A+V D+ GTTRD + +++D E +L DTAGI+ Sbjct: 449 RVALVGRPNVGKSSLLNQLAREERAVVNDLAGTTRDPVDEIVNIDGEDWL--FIDTAGIK 506 Query: 279 ETDDIV---EKEGIKRTFLEVENADLILLL 305 + E RT +E +L L+L Sbjct: 507 RRQHKLTGAEYYSSLRTQAAIERCELALIL 536 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 43/84 (51%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKSSL N + + A+V D PG TRD ++ D + G K+ DT G Sbjct: 275 LAVVGRPNVGKSSLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADV 334 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + +E + + V AD ++ + Sbjct: 335 EGIESAIASQAQVAVTLADAVVFV 358 >gi|322689198|ref|YP_004208932.1| GTP-binding protein [Bifidobacterium longum subsp. infantis 157F] gi|320460534|dbj|BAJ71154.1| GTP-binding protein [Bifidobacterium longum subsp. infantis 157F] Length = 709 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 33/90 (36%), Positives = 52/90 (57%), Gaps = 7/90 (7%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGIR 278 ++ ++G N GKSSL N LA+++ A+V D+ GTTRD + +++D E +L DTAGI+ Sbjct: 449 RVALVGRPNVGKSSLLNQLAREERAVVNDLAGTTRDPVDEIVNIDGEDWL--FIDTAGIK 506 Query: 279 ETDDIV---EKEGIKRTFLEVENADLILLL 305 + E RT +E +L L+L Sbjct: 507 RRQHKLTGAEYYSSLRTQAAIERCELALIL 536 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 43/84 (51%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKSSL N + + A+V D PG TRD ++ D + G K+ DT G Sbjct: 275 LAVVGRPNVGKSSLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADV 334 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + +E + + V AD ++ + Sbjct: 335 EGIESAIASQAQVAVTLADAVVFV 358 >gi|227547248|ref|ZP_03977297.1| small GTP-binding protein [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227212207|gb|EEI80103.1| small GTP-binding protein [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 709 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 33/90 (36%), Positives = 52/90 (57%), Gaps = 7/90 (7%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGIR 278 ++ ++G N GKSSL N LA+++ A+V D+ GTTRD + +++D E +L DTAGI+ Sbjct: 449 RVALVGRPNVGKSSLLNQLAREERAVVNDLAGTTRDPVDEIVNIDGEDWL--FIDTAGIK 506 Query: 279 ETDDIV---EKEGIKRTFLEVENADLILLL 305 + E RT +E +L L+L Sbjct: 507 RRQHKLTGAEYYSSLRTQAAIERCELALIL 536 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 43/84 (51%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKSSL N + + A+V D PG TRD ++ D + G K+ DT G Sbjct: 275 LAVVGRPNVGKSSLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADV 334 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + +E + + V AD ++ + Sbjct: 335 EGIESAIASQAQVAVTLADAVVFV 358 >gi|116670099|ref|YP_831032.1| GTP-binding protein EngA [Arthrobacter sp. FB24] gi|116610208|gb|ABK02932.1| small GTP-binding protein [Arthrobacter sp. FB24] Length = 516 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 49/177 (27%), Positives = 82/177 (46%), Gaps = 27/177 (15%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I ++G N GKSSL N LA + +V + GTTRD + ++L G + DTAGIR Sbjct: 255 RIALIGRPNVGKSSLLNKLAGSERVVVDNTAGTTRDPVDEFIELGGRTWRFVDTAGIRRR 314 Query: 281 DDIVEKEGIK---RTFLEVENAD---LILLLKEINSKKEI-----SFPKNIDFIFIGTKS 329 + + RT +E A+ ++L + E+ S++++ + + K Sbjct: 315 QHMAQGADFYASLRTQSALEKAEVAVVLLAVDEVLSEQDVRILQLAIESGRALVLAFNKW 374 Query: 330 DLYS----TYTE---EYD--HL-------ISSFTGEGLEELINKIKSILSNKFKKLP 370 DL TY E E D H+ IS+ TG + L+ + + L + K++P Sbjct: 375 DLLDDERRTYLEREIEQDLAHVAWAPRVNISALTGWHKDRLVPALDTALESWDKRIP 431 Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 39/84 (46%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+L N + + A+V D PG TRD + G + DT G Sbjct: 81 LAIIGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVMYSATWNGRNFTVVDTGGWEHDA 140 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + ++ + VE AD +L + Sbjct: 141 RGIHARVAEQAEMAVELADAVLFV 164 >gi|189439326|ref|YP_001954407.1| bifunctional cytidylate kinase/GTP-binding protein [Bifidobacterium longum DJO10A] gi|312132698|ref|YP_004000037.1| cmk [Bifidobacterium longum subsp. longum BBMN68] gi|189427761|gb|ACD97909.1| Cytidylate kinase [Bifidobacterium longum DJO10A] gi|311773657|gb|ADQ03145.1| Cmk [Bifidobacterium longum subsp. longum BBMN68] Length = 709 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 33/90 (36%), Positives = 52/90 (57%), Gaps = 7/90 (7%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGIR 278 ++ ++G N GKSSL N LA+++ A+V D+ GTTRD + +++D E +L DTAGI+ Sbjct: 449 RVALVGRPNVGKSSLLNQLAREERAVVNDLAGTTRDPVDEIVNIDGEDWL--FIDTAGIK 506 Query: 279 ETDDIV---EKEGIKRTFLEVENADLILLL 305 + E RT +E +L L+L Sbjct: 507 RRQHKLTGAEYYSSLRTQAAIERCELALIL 536 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 43/84 (51%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKSSL N + + A+V D PG TRD ++ D + G K+ DT G Sbjct: 275 LAVVGRPNVGKSSLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADV 334 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + +E + + V AD ++ + Sbjct: 335 EGIESAIASQAQVAVTLADAVVFV 358 >gi|157825293|ref|YP_001493013.1| GTP-binding protein Era [Rickettsia akari str. Hartford] gi|189037662|sp|A8GM80|ERA_RICAH RecName: Full=GTPase Era gi|157799251|gb|ABV74505.1| GTP-binding protein Era [Rickettsia akari str. Hartford] Length = 293 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 50/84 (59%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N+GKS+L N + + ++IVT TTR ++T + L+ V + DT GI E Sbjct: 9 VCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPK 68 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 +EK ++ + + +ADL++L+ Sbjct: 69 GSLEKAMVRCAWSSLHSADLVMLI 92 >gi|322691264|ref|YP_004220834.1| GTP-binding protein [Bifidobacterium longum subsp. longum JCM 1217] gi|320456120|dbj|BAJ66742.1| GTP-binding protein [Bifidobacterium longum subsp. longum JCM 1217] Length = 709 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 33/90 (36%), Positives = 52/90 (57%), Gaps = 7/90 (7%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGIR 278 ++ ++G N GKSSL N LA+++ A+V D+ GTTRD + +++D E +L DTAGI+ Sbjct: 449 RVALVGRPNVGKSSLLNQLAREERAVVNDLAGTTRDPVDEIVNIDGEDWL--FIDTAGIK 506 Query: 279 ETDDIV---EKEGIKRTFLEVENADLILLL 305 + E RT +E +L L+L Sbjct: 507 RRQHKLTGAEYYSSLRTQAAIERCELALIL 536 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 43/84 (51%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKSSL N + + A+V D PG TRD ++ D + G K+ DT G Sbjct: 275 LAVVGRPNVGKSSLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADV 334 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + +E + + V AD ++ + Sbjct: 335 EGIESAIASQAQVAVTLADAVVFV 358 >gi|213692049|ref|YP_002322635.1| small GTP-binding protein [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213523510|gb|ACJ52257.1| small GTP-binding protein [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320458161|dbj|BAJ68782.1| GTP-binding protein [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 709 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 33/90 (36%), Positives = 52/90 (57%), Gaps = 7/90 (7%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGIR 278 ++ ++G N GKSSL N LA+++ A+V D+ GTTRD + +++D E +L DTAGI+ Sbjct: 449 RVALVGRPNVGKSSLLNQLAREERAVVNDLAGTTRDPVDEIVNIDGEDWL--FIDTAGIK 506 Query: 279 ETDDIV---EKEGIKRTFLEVENADLILLL 305 + E RT +E +L L+L Sbjct: 507 RRQHKLTGAEYYSSLRTQAAIERCELALIL 536 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 43/84 (51%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKSSL N + + A+V D PG TRD ++ D + G K+ DT G Sbjct: 275 LAIVGRPNVGKSSLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADV 334 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + +E + + V AD ++ + Sbjct: 335 EGIESAIASQAQVAVTLADAVVFV 358 >gi|47459181|ref|YP_016043.1| GTP-binding protein Era [Mycoplasma mobile 163K] gi|47458510|gb|AAT27832.1| GTP-binding protein era [Mycoplasma mobile 163K] Length = 297 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 41/119 (34%), Positives = 70/119 (58%), Gaps = 13/119 (10%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT----IDLDLEGYLVKISDTAGIRE 279 I+G NAGKSSL N+L K+ V+I+++ P TTRD +T + + E ++ +DT GI + Sbjct: 12 IIGKPNAGKSSLLNSLLKESVSIISNKPQTTRDQITGIYSDEANTEQFV--FTDTPGIHK 69 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNI-DFIFIGTKSDL 331 + + K+ + ++ +++ DL+L L I+ + E IS +N+ + I I TK DL Sbjct: 70 SKTELGKKMNEYSYSSIKDIDLVLFLSPIDYEVEEIDLEIISNLENVKNKIAIVTKIDL 128 >gi|313827765|gb|EFS65479.1| GTP-binding protein HflX [Propionibacterium acnes HL063PA2] Length = 493 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 55/190 (28%), Positives = 90/190 (47%), Gaps = 32/190 (16%) Query: 211 KLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLE 265 K + IRN + I+G++NAGKSSL N L + V A+ + TTR T D Sbjct: 263 KRADRIRNQVPSVAIVGYTNAGKSSLLNRLTRAGVLVENALFATLDPTTRRATTSD---- 318 Query: 266 GYLVKISDTAG-IRE-TDDIV-------EKEGIKRTFLEVENADLILLLKEINSKKEISF 316 G + ++DT G +R D+V E+ + L V +AD L ++++ + + Sbjct: 319 GRVYTLTDTVGFVRHLPHDLVEAFASTLEETAMADVLLHVVDADDPDPLGQVDAVRGVLS 378 Query: 317 ---PKNIDFIFIGTKSD---------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364 NI I + K D L ST+ Y L+S+ TGEG+++L+ I++ L Sbjct: 379 GIGASNIPEILVLNKIDRLSDETILTLRSTFPGAY--LVSAHTGEGIDKLVEAIEAGLPI 436 Query: 365 KFKKLPFSIP 374 +++ IP Sbjct: 437 PSQRVDVVIP 446 >gi|212704882|ref|ZP_03313010.1| hypothetical protein DESPIG_02949 [Desulfovibrio piger ATCC 29098] gi|212671724|gb|EEB32207.1| hypothetical protein DESPIG_02949 [Desulfovibrio piger ATCC 29098] Length = 309 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 45/188 (23%), Positives = 78/188 (41%), Gaps = 33/188 (17%) Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272 G+ R G+ + ++G NAGKS+L N L + V IVT P TTR+ + L + Sbjct: 3 GQNYRCGW-VALMGPPNAGKSTLLNGLMGQKVTIVTPKPQTTRNQIVGILTDDDAQAIFM 61 Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNID----------- 321 DT G+ + + K I+ + + AD+I+ + +++ I P+ +D Sbjct: 62 DTPGLSQVRGRLSKTMIQAVWQSLGQADVIMPV--LDAHLYIRHPEYLDRDLAPVAEALA 119 Query: 322 -----FIFIGTKSDLYSTYTEEYDHL--------------ISSFTGEGLEELINKIKSIL 362 + + K DL++ + L +S+ +GL EL IK L Sbjct: 120 SDERPMVVVANKVDLFADKSRMLPLLTRLNEMWPRAEIFPVSALNKDGLPELAKLIKKQL 179 Query: 363 SNKFKKLP 370 + P Sbjct: 180 PKGIAQFP 187 >gi|302834102|ref|XP_002948614.1| iron hydrogenase assembly protein [Volvox carteri f. nagariensis] gi|300266301|gb|EFJ50489.1| iron hydrogenase assembly protein [Volvox carteri f. nagariensis] Length = 1198 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 30/59 (50%), Positives = 38/59 (64%), Gaps = 1/59 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRE 279 I + G NAGKSSL NALA+++ IV PGTT DV T+ L+L K+ DTAG+ E Sbjct: 689 IGVFGIMNAGKSSLVNALAQQEACIVDSHPGTTADVKTVLLELHDLGPAKLLDTAGLDE 747 >gi|67459566|ref|YP_247190.1| GTP-binding protein Era [Rickettsia felis URRWXCal2] gi|75536034|sp|Q4UKB0|ERA_RICFE RecName: Full=GTPase Era gi|67005099|gb|AAY62025.1| GTP-binding protein Era [Rickettsia felis URRWXCal2] Length = 293 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 28/82 (34%), Positives = 49/82 (59%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 I+G N+GKS+L N + + ++IVT TTR ++T + L+ V + DT GI E Sbjct: 11 IIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGT 70 Query: 284 VEKEGIKRTFLEVENADLILLL 305 +EK ++ + + +ADL++L+ Sbjct: 71 LEKAMVRCAWSSLHSADLVMLI 92 >gi|203284418|ref|YP_002222158.1| GTP-binding protein [Borrelia duttonii Ly] gi|203287952|ref|YP_002222967.1| GTP-binding protein [Borrelia recurrentis A1] gi|201083861|gb|ACH93452.1| GTP-binding protein [Borrelia duttonii Ly] gi|201085172|gb|ACH94746.1| GTP-binding protein [Borrelia recurrentis A1] Length = 440 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 3/89 (3%) Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267 S GKL + KI I+G N+GKS+L N L+ +V+IV+ + GTTRD + Sbjct: 169 SVGKLSDDEHIDVKIGIIGKPNSGKSTLVNFLSGDEVSIVSSMAGTTRDFIKAKFQRNSK 228 Query: 268 LVKISDTAGIR---ETDDIVEKEGIKRTF 293 ++ DTAGIR ++I+E + R Sbjct: 229 TFELIDTAGIRRRARINEIIEHYSVSRAL 257 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/98 (28%), Positives = 52/98 (53%) Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 +G I+N ++I+G N GKS+LFN L + +I ++ G TRD++ + Y + Sbjct: 4 IGSKIQNYSSVLIVGRPNVGKSTLFNKLLSSNRSITNEVYGVTRDLVREICKINSYKFYL 63 Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309 D G D + + + + +++ DLILL+ ++N Sbjct: 64 IDAGGFTLLKDELSQVVVNKVIGLLDSVDLILLVLDVN 101 >gi|154508812|ref|ZP_02044454.1| hypothetical protein ACTODO_01321 [Actinomyces odontolyticus ATCC 17982] gi|153798446|gb|EDN80866.1| hypothetical protein ACTODO_01321 [Actinomyces odontolyticus ATCC 17982] Length = 517 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 37/58 (63%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 ++ ++G N GKSSL NALA + +V ++ GTTRD + ++L+G DTAGIR Sbjct: 258 RVALVGRPNVGKSSLLNALAGGERVVVNELAGTTRDPVDELIELDGRSWWFVDTAGIR 315 Score = 43.1 bits (100), Expect = 0.080, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 10/89 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+L N + + A+V D PG TRD ++ + G + DT G Sbjct: 84 LAVVGRPNVGKSTLVNRILGRREAVVQDTPGVTRDRVSYPAEWAGRDFTLVDTGGWE--- 140 Query: 282 DIVEKEGIKRTFLE-----VENADLILLL 305 ++ +G+ R+ E V+ AD ++L+ Sbjct: 141 --IDVKGLDRSVAEQAEIAVDLADAVVLV 167 >gi|313884154|ref|ZP_07817920.1| ribosome biogenesis GTPase Der [Eremococcus coleocola ACS-139-V-Col8] gi|312620601|gb|EFR32024.1| ribosome biogenesis GTPase Der [Eremococcus coleocola ACS-139-V-Col8] Length = 438 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS++FN L V+IV D PG TRD + G ++ DT GI D Sbjct: 7 VALVGRPNVGKSTIFNRLVGDRVSIVEDFPGVTRDRVYATGKWLGNDYRLIDTGGIELDD 66 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + K+ + + ++ AD+I++L Sbjct: 67 QPLMKQIRYQAEIAIDEADVIVML 90 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 51/89 (57%), Gaps = 4/89 (4%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRE 279 K +G N GKSSL NA+ K++ IV++I GTTR+ + E G + + DTAGIR+ Sbjct: 178 KFSFIGRPNVGKSSLVNAVLKEERVIVSNIEGTTREAVDSKFISETGKEMTVIDTAGIRK 237 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLL 305 + EK + R+ ++ +D++ ++ Sbjct: 238 KGKVYENTEKYSVMRSLAAIDRSDVVCIV 266 >gi|289425141|ref|ZP_06426918.1| GTP-binding protein HflX [Propionibacterium acnes SK187] gi|289154119|gb|EFD02807.1| GTP-binding protein HflX [Propionibacterium acnes SK187] Length = 483 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 55/190 (28%), Positives = 90/190 (47%), Gaps = 32/190 (16%) Query: 211 KLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLE 265 K + IRN + I+G++NAGKSSL N L + V A+ + TTR T D Sbjct: 253 KRADRIRNKVPSVAIVGYTNAGKSSLLNRLTRAGVLVENALFATLDPTTRRATTSD---- 308 Query: 266 GYLVKISDTAG-IRE-TDDIV-------EKEGIKRTFLEVENADLILLLKEINSKKEISF 316 G + ++DT G +R D+V E+ + L V +AD L ++++ + + Sbjct: 309 GRVYTLTDTVGFVRHLPHDLVEAFASTLEETAMADVLLHVVDADDPDPLGQVDAVRGVLS 368 Query: 317 ---PKNIDFIFIGTKSD---------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364 NI I + K D L ST+ Y L+S+ TGEG+++L+ I++ L Sbjct: 369 GIGASNIPEILVLNKIDRLSDETILTLRSTFPGAY--LVSAHTGEGIDKLVEAIEAGLPI 426 Query: 365 KFKKLPFSIP 374 +++ IP Sbjct: 427 PSQRVDVVIP 436 >gi|332296332|ref|YP_004438255.1| small GTP-binding protein [Thermodesulfobium narugense DSM 14796] gi|332179435|gb|AEE15124.1| small GTP-binding protein [Thermodesulfobium narugense DSM 14796] Length = 418 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 2/91 (2%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276 N I +LG +N GKSS N + +DV+I++ IPGTT DV+ ++L V DTAG Sbjct: 8 NRLHIALLGRTNVGKSSFLNMITGQDVSIISSIPGTTTDVVEKAMELLPIGPVLFLDTAG 67 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKE 307 + + +K+T+ AD+ +LL E Sbjct: 68 FDDKSTLANLR-LKKTYNVFNRADVAVLLLE 97 >gi|283853093|ref|ZP_06370348.1| small GTP-binding protein [Desulfovibrio sp. FW1012B] gi|283571491|gb|EFC19496.1| small GTP-binding protein [Desulfovibrio sp. FW1012B] Length = 405 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 44/127 (34%), Positives = 69/127 (54%), Gaps = 12/127 (9%) Query: 218 NGYKIVI--LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDT 274 G ++VI +G +NAGKSSL NA+ +DVAIV+D+ GTT D + +L V DT Sbjct: 11 RGVRLVITLVGRTNAGKSSLLNAMTGQDVAIVSDVAGTTTDPVAKAYELLPLGPVTFYDT 70 Query: 275 AGIRETDDI------VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNID--FIFIG 326 AG+ +T ++ K+ + RT + V A+ L E + I+ + +D F+ + Sbjct: 71 AGLDDTGELGALRMAATKKVLWRTDIAVVVAEAGPGLTEAE-RAVIADIRRLDVPFLVVF 129 Query: 327 TKSDLYS 333 K+DL S Sbjct: 130 NKTDLAS 136 >gi|206603829|gb|EDZ40309.1| GTP-binding protein (EngA) [Leptospirillum sp. Group II '5-way CG'] Length = 469 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 44/142 (30%), Positives = 65/142 (45%), Gaps = 10/142 (7%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKS+LFN L + AIV D PG TRD + ++ DT GI D Sbjct: 7 IAILGRPNVGKSTLFNRLLSRREAIVEDRPGVTRDRHYSQGTIGRKSFRLVDTGGILFGD 66 Query: 282 DIVEKEGI-KRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTY----- 335 D E I K+ +E AD ++ + + +E P + D I +S S + Sbjct: 67 DHPLGESIRKQALFALEEADAVIYVMD---GREGYLPVDADVIGRIRRSGKPSVFAVNKV 123 Query: 336 -TEEYDHLISSFTGEGLEELIN 356 T + + +++ F G+ LI Sbjct: 124 DTVKTEEVLADFHRHGVAPLIG 145 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 6/101 (5%) Query: 209 QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL 268 Q L I + ++ ++G N GKS+L N L ++ + + IPGTTRD + + Sbjct: 189 QAWLQRRIADPPRVAVIGRPNVGKSTLVNRLLGEERLVTSPIPGTTRDAIDTLVTFRDKT 248 Query: 269 VKISDTAGIRETDDIVEKEGI------KRTFLEVENADLIL 303 DTAG+R+ + E + R LE E A ++L Sbjct: 249 YHFVDTAGLRKKGKVAEASELYAQIRTDRAILESEIAVVLL 289 >gi|294790886|ref|ZP_06756044.1| ribosome-associated GTPase EngA [Scardovia inopinata F0304] gi|294458783|gb|EFG27136.1| ribosome-associated GTPase EngA [Scardovia inopinata F0304] Length = 725 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 26/85 (30%), Positives = 46/85 (54%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I ++G N GKS+L N + + AIV D PG TRD ++ D + G K+ DT G Sbjct: 291 QIAVVGRPNVGKSTLVNRILGRRAAIVEDTPGVTRDRVSYDANWAGTDFKVIDTGGWESD 350 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 + +E ++ + + +D ++L+ Sbjct: 351 VEGIESAIAEQAQIAMNLSDAVILV 375 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 7/90 (7%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ ++G N GKSSL N LA+ + ++V D GTTRD + + + DTAGI+ Sbjct: 466 RVALIGRPNVGKSSLLNELAQDNRSVVNDQAGTTRDPIDQVVTIGSKDWLFIDTAGIKRR 525 Query: 281 DDIVEKEGIK-----RTFLEVENADLILLL 305 + ++ G RT +E ++L L+L Sbjct: 526 --LHKQTGADYYSSLRTQAAIERSELALVL 553 >gi|229817644|ref|ZP_04447926.1| hypothetical protein BIFANG_02914 [Bifidobacterium angulatum DSM 20098] gi|229785433|gb|EEP21547.1| hypothetical protein BIFANG_02914 [Bifidobacterium angulatum DSM 20098] Length = 709 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 51/182 (28%), Positives = 80/182 (43%), Gaps = 29/182 (15%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKSSL N + VA+V D PG TRD ++ D + G K+ DT G Sbjct: 275 LAIVGRPNVGKSSLVNRILGHRVAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWE--- 331 Query: 282 DIVEKEGIKRTF-----LEVENADLILLLKE-----INSKKEI-----SFPKNIDFIFIG 326 V+ EGI + V AD ++L+ + N+++ I + K + + + Sbjct: 332 --VDVEGIDSAIASQAEVAVNLADAVVLVVDGQVGLTNTEERIVKMLRASGKPV-TLAVN 388 Query: 327 TKSDLYSTY-TEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378 D S Y E+ L +S+ G G+ EL++ L K + PSH R Sbjct: 389 KIDDRESEYLAAEFWKLGLGEPYAVSAMHGRGVGELLDAAIDSLKKAEKTSGYLTPSHLR 448 Query: 379 HL 380 + Sbjct: 449 RV 450 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 4/60 (6%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT--IDLDLEGYLVKISDTAGIR 278 ++ ++G N GKSSL N LA ++ +V D+ GTTRD + + +D E +L DTAGI+ Sbjct: 449 RVALVGRPNVGKSSLLNQLANEERTVVNDLAGTTRDPVDEIVSMDGEDWL--FIDTAGIK 506 >gi|319940747|ref|ZP_08015088.1| small GTP-binding protein [Sutterella wadsworthensis 3_1_45B] gi|319805807|gb|EFW02581.1| small GTP-binding protein [Sutterella wadsworthensis 3_1_45B] Length = 414 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 12/102 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDTAGIRE 279 I + G NAGKSSL NAL + ++IV+D+PGTT D + +L G +V I DTAGI Sbjct: 12 IGLFGRRNAGKSSLANALTHQHISIVSDVPGTTTDPVEKACELAPIGPVVFI-DTAGI-- 68 Query: 280 TDDIVE--KEGIKRTFLEVENADLILLLKEI----NSKKEIS 315 DD+ E + ++R+ +E DL L++ N +EI+ Sbjct: 69 -DDVGELGRARVERSKTVLEWVDLALIVASAQGLENDDREIA 109 >gi|313764468|gb|EFS35832.1| GTP-binding protein HflX [Propionibacterium acnes HL013PA1] gi|313812955|gb|EFS50669.1| GTP-binding protein HflX [Propionibacterium acnes HL025PA1] gi|313816006|gb|EFS53720.1| GTP-binding protein HflX [Propionibacterium acnes HL059PA1] gi|314915460|gb|EFS79291.1| GTP-binding protein HflX [Propionibacterium acnes HL005PA4] gi|314918256|gb|EFS82087.1| GTP-binding protein HflX [Propionibacterium acnes HL050PA1] gi|314920069|gb|EFS83900.1| GTP-binding protein HflX [Propionibacterium acnes HL050PA3] gi|314932083|gb|EFS95914.1| GTP-binding protein HflX [Propionibacterium acnes HL067PA1] gi|314955744|gb|EFT00144.1| GTP-binding protein HflX [Propionibacterium acnes HL027PA1] gi|314958159|gb|EFT02262.1| GTP-binding protein HflX [Propionibacterium acnes HL002PA1] gi|314967820|gb|EFT11919.1| GTP-binding protein HflX [Propionibacterium acnes HL037PA1] gi|315098523|gb|EFT70499.1| GTP-binding protein HflX [Propionibacterium acnes HL059PA2] gi|315101119|gb|EFT73095.1| GTP-binding protein HflX [Propionibacterium acnes HL046PA1] gi|315105395|gb|EFT77371.1| GTP-binding protein HflX [Propionibacterium acnes HL030PA1] gi|315108340|gb|EFT80316.1| GTP-binding protein HflX [Propionibacterium acnes HL030PA2] gi|327450795|gb|EGE97449.1| GTP-binding protein HflX [Propionibacterium acnes HL087PA3] gi|327453860|gb|EGF00515.1| GTP-binding protein HflX [Propionibacterium acnes HL083PA2] gi|328754214|gb|EGF67830.1| GTP-binding protein HflX [Propionibacterium acnes HL087PA1] gi|328754535|gb|EGF68151.1| GTP-binding protein HflX [Propionibacterium acnes HL025PA2] Length = 493 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 55/190 (28%), Positives = 90/190 (47%), Gaps = 32/190 (16%) Query: 211 KLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLE 265 K + IRN + I+G++NAGKSSL N L + V A+ + TTR T D Sbjct: 263 KRADRIRNKVPSVAIVGYTNAGKSSLLNRLTRAGVLVENALFATLDPTTRRATTSD---- 318 Query: 266 GYLVKISDTAG-IRE-TDDIV-------EKEGIKRTFLEVENADLILLLKEINSKKEISF 316 G + ++DT G +R D+V E+ + L V +AD L ++++ + + Sbjct: 319 GRVYTLTDTVGFVRHLPHDLVEAFASTLEETAMADVLLHVVDADDPDPLGQVDAVRGVLS 378 Query: 317 ---PKNIDFIFIGTKSD---------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364 NI I + K D L ST+ Y L+S+ TGEG+++L+ I++ L Sbjct: 379 GIGASNIPEILVLNKIDRLSDETILTLRSTFPGAY--LVSAHTGEGIDKLVEAIEAGLPI 436 Query: 365 KFKKLPFSIP 374 +++ IP Sbjct: 437 PSQRVDVVIP 446 >gi|283788475|ref|YP_003368340.1| GTP-binding protein [Citrobacter rodentium ICC168] gi|282951929|emb|CBG91650.1| putative GTP-binding protein [Citrobacter rodentium ICC168] Length = 303 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L +S HI + L ++ + I I+G S AGKSSL NAL + +V V+D+ TR+V Sbjct: 30 LPYSLSRHILE-HLRKLTHHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQ 88 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305 L G+ + I+D G+ E+ D E E + R L DL+L L Sbjct: 89 RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 134 >gi|327330244|gb|EGE71993.1| GTP-binding protein HflX [Propionibacterium acnes HL097PA1] Length = 493 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 55/190 (28%), Positives = 90/190 (47%), Gaps = 32/190 (16%) Query: 211 KLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLE 265 K + IRN + I+G++NAGKSSL N L + V A+ + TTR T D Sbjct: 263 KRADRIRNKVPSVAIVGYTNAGKSSLLNRLTRAGVLVENALFATLDPTTRRATTSD---- 318 Query: 266 GYLVKISDTAG-IRE-TDDIV-------EKEGIKRTFLEVENADLILLLKEINSKKEISF 316 G + ++DT G +R D+V E+ + L V +AD L ++++ + + Sbjct: 319 GRVYTLTDTVGFVRHLPHDLVEAFASTLEETAMADVLLHVVDADDPDPLGQVDAVRGVLS 378 Query: 317 ---PKNIDFIFIGTKSD---------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364 NI I + K D L ST+ Y L+S+ TGEG+++L+ I++ L Sbjct: 379 GIGASNIPEILVLNKIDRLSDETILTLRSTFPGAY--LVSAHTGEGIDKLVEAIEAGLPI 436 Query: 365 KFKKLPFSIP 374 +++ IP Sbjct: 437 PSQRVDVVIP 446 >gi|291484708|dbj|BAI85783.1| GTP-binding protein EngA [Bacillus subtilis subsp. natto BEST195] Length = 436 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 27/94 (28%), Positives = 53/94 (56%), Gaps = 2/94 (2%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN +A + ++IV D PG TRD + + Y + DT GI D Sbjct: 6 VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + + ++ + ++ AD+I+ + +N ++ ++ Sbjct: 66 EPFLAQIRQQAEIAMDEADVIIFM--VNGREGVT 97 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 3/85 (3%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 ++G N GKSSL NA+ ++ IV+++ GTTRD + I DTAG+R+ + Sbjct: 180 LIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKV 239 Query: 284 ---VEKEGIKRTFLEVENADLILLL 305 EK + R ++ ++++ ++ Sbjct: 240 YETTEKYSVLRALKAIDRSEVVAVV 264 >gi|312879371|ref|ZP_07739171.1| small GTP-binding protein [Aminomonas paucivorans DSM 12260] gi|310782662|gb|EFQ23060.1| small GTP-binding protein [Aminomonas paucivorans DSM 12260] Length = 414 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 41/149 (27%), Positives = 76/149 (51%), Gaps = 17/149 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL--VKISDTAGIRE 279 +V+ G NAGKSSL N + + +IV+ PGTT D + +++ G L V ++DTAG + Sbjct: 12 VVVYGRRNAGKSSLVNRMLGMEASIVSPRPGTTTDPVVRSVEM-GALGPVAVTDTAGYDD 70 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLK---EINSKKEISFPKNI-----DFIFIGTKSD- 330 +D + +R+ +E AD++L + E + EI+ + + + + T+SD Sbjct: 71 DEDELGTLRTERSRKRLETADIVLFVTPGDEEPTSDEIALTEELHRRDKPVLVVLTRSDR 130 Query: 331 ----LYSTYTEEYDHL-ISSFTGEGLEEL 354 + + + + + TG G+E+L Sbjct: 131 EIAEAKRRFAPGFRKIAVDNLTGRGIEDL 159 >gi|16079341|ref|NP_390165.1| GTP-binding protein EngA [Bacillus subtilis subsp. subtilis str. 168] gi|221310200|ref|ZP_03592047.1| GTP-binding protein EngA [Bacillus subtilis subsp. subtilis str. 168] gi|221314523|ref|ZP_03596328.1| GTP-binding protein EngA [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319445|ref|ZP_03600739.1| GTP-binding protein EngA [Bacillus subtilis subsp. subtilis str. JH642] gi|221323721|ref|ZP_03605015.1| GTP-binding protein EngA [Bacillus subtilis subsp. subtilis str. SMY] gi|321311754|ref|YP_004204041.1| GTP-binding protein Der [Bacillus subtilis BSn5] gi|1730915|sp|P50743|DER_BACSU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|1146219|gb|AAC83966.1| similar to Escherichia coli GTP-binding protein Era; putative [Bacillus subtilis subsp. subtilis str. 168] gi|2634702|emb|CAB14200.1| GTPase essential for ribosome 50S subunit assembly [Bacillus subtilis subsp. subtilis str. 168] gi|320018028|gb|ADV93014.1| GTP-binding protein Der [Bacillus subtilis BSn5] Length = 436 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 27/94 (28%), Positives = 53/94 (56%), Gaps = 2/94 (2%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN +A + ++IV D PG TRD + + Y + DT GI D Sbjct: 6 VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + + ++ + ++ AD+I+ + +N ++ ++ Sbjct: 66 EPFLAQIRQQAEIAMDEADVIIFM--VNGREGVT 97 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 3/85 (3%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 ++G N GKSSL NA+ ++ IV+++ GTTRD + I DTAG+R+ + Sbjct: 180 LIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKV 239 Query: 284 ---VEKEGIKRTFLEVENADLILLL 305 EK + R ++ ++++ ++ Sbjct: 240 YETTEKYSVLRALKAIDRSEVVAVV 264 >gi|160915033|ref|ZP_02077246.1| hypothetical protein EUBDOL_01041 [Eubacterium dolichum DSM 3991] gi|158432832|gb|EDP11121.1| hypothetical protein EUBDOL_01041 [Eubacterium dolichum DSM 3991] Length = 298 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 56/215 (26%), Positives = 94/215 (43%), Gaps = 23/215 (10%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R+G+ I I+G NAGKS+L NA+ K+ VAI T P TTR+ ++ L E DT G Sbjct: 4 RSGF-IAIVGRPNAGKSTLLNAILKEKVAITTPKPQTTRNNISGILTTEDTQYVFVDTPG 62 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL----KEINSKKEISFPK----NIDFIFIGTK 328 I + + + K + + AD+ + + S E K +I I K Sbjct: 63 IHKPKHELGRTLNKNAYTAISEADVNFWVVDATQPYGSGDEFMLEKMKSAHIPVFLILNK 122 Query: 329 SDL---------YSTYTEEYDHL----ISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375 DL + + E + IS+ T + +E L+ +S LS K P + S Sbjct: 123 IDLLEKEKLLKVLARWQERMEFAEIFPISALTNDNIEHLLEITRSYLSEGPKYFPDDMIS 182 Query: 376 HKRHLYHLSQTVRYLEMASLNEK-DCGLDIIAENL 409 + +++ +R + NE+ + ++ EN+ Sbjct: 183 DHGLSFQIAEIIREKVLYKTNEEVPHSVAVVVENM 217 >gi|72161614|ref|YP_289271.1| GTP-binding protein EngA [Thermobifida fusca YX] gi|71915346|gb|AAZ55248.1| Small GTP-binding protein domain:GTP-binding [Thermobifida fusca YX] Length = 463 Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 36/58 (62%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 ++ ++G N GKSSL N LA ++ +V + GTTRD + ++L G K DTAGIR Sbjct: 198 RVALVGRPNVGKSSLLNKLAGEERVVVDSVAGTTRDAVDELVELGGKTWKFIDTAGIR 255 Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 42/84 (50%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKSSL N + + A+V D+PG TRD + D + +G + DT G Sbjct: 24 VAVVGRPNVGKSSLVNRIIGRREAVVEDVPGVTRDRVAYDANWQGREFTLVDTGGWETNA 83 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + ++ E AD+IL + Sbjct: 84 KGLAAMVARQAEYAAETADVILFV 107 >gi|295130581|ref|YP_003581244.1| GTP-binding protein HflX [Propionibacterium acnes SK137] gi|291375198|gb|ADD99052.1| GTP-binding protein HflX [Propionibacterium acnes SK137] gi|313772150|gb|EFS38116.1| GTP-binding protein HflX [Propionibacterium acnes HL074PA1] gi|313792154|gb|EFS40255.1| GTP-binding protein HflX [Propionibacterium acnes HL110PA1] gi|313810014|gb|EFS47735.1| GTP-binding protein HflX [Propionibacterium acnes HL083PA1] gi|313830342|gb|EFS68056.1| GTP-binding protein HflX [Propionibacterium acnes HL007PA1] gi|313833716|gb|EFS71430.1| GTP-binding protein HflX [Propionibacterium acnes HL056PA1] gi|313838719|gb|EFS76433.1| GTP-binding protein HflX [Propionibacterium acnes HL086PA1] gi|314973347|gb|EFT17443.1| GTP-binding protein HflX [Propionibacterium acnes HL053PA1] gi|314976024|gb|EFT20119.1| GTP-binding protein HflX [Propionibacterium acnes HL045PA1] gi|314983954|gb|EFT28046.1| GTP-binding protein HflX [Propionibacterium acnes HL005PA1] gi|315078029|gb|EFT50080.1| GTP-binding protein HflX [Propionibacterium acnes HL053PA2] gi|315080654|gb|EFT52630.1| GTP-binding protein HflX [Propionibacterium acnes HL078PA1] gi|315096262|gb|EFT68238.1| GTP-binding protein HflX [Propionibacterium acnes HL038PA1] gi|327326174|gb|EGE67964.1| GTP-binding protein HflX [Propionibacterium acnes HL096PA2] gi|327445938|gb|EGE92592.1| GTP-binding protein HflX [Propionibacterium acnes HL043PA2] gi|327448083|gb|EGE94737.1| GTP-binding protein HflX [Propionibacterium acnes HL043PA1] gi|327453128|gb|EGE99782.1| GTP-binding protein HflX [Propionibacterium acnes HL092PA1] gi|328760604|gb|EGF74171.1| GTP-binding protein HflX [Propionibacterium acnes HL099PA1] Length = 493 Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 55/190 (28%), Positives = 89/190 (46%), Gaps = 32/190 (16%) Query: 211 KLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLE 265 K + IRN + I+G++NAGKSSL N L + V A+ + TTR T D Sbjct: 263 KRADRIRNKVPSVAIVGYTNAGKSSLLNRLTRAGVLVENALFATLDPTTRRATTSD---- 318 Query: 266 GYLVKISDTAG-IRE-TDDIV-------EKEGIKRTFLEVENADLILLLKEINSKK---- 312 G + ++DT G +R D+V E+ + L V +AD L ++++ + Sbjct: 319 GRVYTLTDTVGFVRHLPHDLVEAFASTLEETAMADVLLHVVDADDPDPLGQVDAVRGVLS 378 Query: 313 --------EISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364 EI ID + T L ST+ Y L+S+ TGEG+++L+ I++ L Sbjct: 379 GIGASNIPEILVLNKIDRLSDETILTLRSTFPGAY--LVSAHTGEGIDKLVEAIEAGLPI 436 Query: 365 KFKKLPFSIP 374 +++ IP Sbjct: 437 PSQRVDVVIP 446 >gi|289425429|ref|ZP_06427206.1| ribosome-associated GTPase EngA [Propionibacterium acnes SK187] gi|289154407|gb|EFD03095.1| ribosome-associated GTPase EngA [Propionibacterium acnes SK187] gi|313764267|gb|EFS35631.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL013PA1] gi|313791953|gb|EFS40054.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL110PA1] gi|313801564|gb|EFS42804.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL110PA2] gi|313812757|gb|EFS50471.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL025PA1] gi|313816358|gb|EFS54072.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL059PA1] gi|313827352|gb|EFS65066.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL063PA2] gi|313838918|gb|EFS76632.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL086PA1] gi|314915744|gb|EFS79575.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL005PA4] gi|314917888|gb|EFS81719.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL050PA1] gi|314920270|gb|EFS84101.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL050PA3] gi|314931490|gb|EFS95321.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL067PA1] gi|314955499|gb|EFS99902.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL027PA1] gi|314957875|gb|EFT01978.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL002PA1] gi|314962609|gb|EFT06709.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL082PA1] gi|315077825|gb|EFT49876.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL053PA2] gi|315098722|gb|EFT70698.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL059PA2] gi|315101509|gb|EFT73485.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL046PA1] gi|315108797|gb|EFT80773.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL030PA2] gi|327450594|gb|EGE97248.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL087PA3] gi|327453328|gb|EGE99982.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL092PA1] gi|327454067|gb|EGF00722.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL083PA2] gi|328753149|gb|EGF66765.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL025PA2] gi|328754012|gb|EGF67628.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL087PA1] Length = 456 Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 25/88 (28%), Positives = 44/88 (50%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+L N + + A+V D+PG TRD ++ D + G + DT G Sbjct: 24 VAVVGRPNVGKSTLVNRILGRRAAVVQDVPGVTRDRVSYDAEWSGRQFVLVDTGGWASDA 83 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN 309 + ++ L + AD +L + + N Sbjct: 84 SGMAAMIAEQAELAISTADAVLFVVDAN 111 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/100 (32%), Positives = 59/100 (59%), Gaps = 9/100 (9%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSL N +A+++ +V+DI GTT D + + + G + + DTAG+R+ Sbjct: 196 RVAIVGKPNVGKSSLLNRIARQNRVVVSDISGTTVDPVDELVTVGGTVYQFIDTAGLRKR 255 Query: 281 DDIVEKEGIK-----RTFLEVENADLILLLKEINSKKEIS 315 + E G + RT +E A++ +++ I++ + IS Sbjct: 256 --VKEASGHEYYASLRTQAAIERAEVCVVV--IDASESIS 291 >gi|159903563|ref|YP_001550907.1| GTPase SAR1 and related small G protein [Prochlorococcus marinus str. MIT 9211] gi|159888739|gb|ABX08953.1| GTPase SAR1 and related small G protein [Prochlorococcus marinus str. MIT 9211] Length = 516 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 36/97 (37%), Positives = 56/97 (57%), Gaps = 9/97 (9%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL--VKI 271 E++R +V+ G ++GK++L AL K+ V V+ GTT+ T L L+G ++I Sbjct: 117 ELVRGDITVVLFGTGSSGKTTLIRALLKEIVGEVSATMGTTKTSHTYRLRLKGLERGIQI 176 Query: 272 SDTAGIRETDDIVEKEGIKR---TFLEVENADLILLL 305 DT GI ET + EG KR +FL+ ADLI+++ Sbjct: 177 IDTPGILETGE----EGNKREKESFLKASRADLIIVV 209 >gi|238650708|ref|YP_002916561.1| GTP-binding protein Era [Rickettsia peacockii str. Rustic] gi|238624806|gb|ACR47512.1| GTP-binding protein Era [Rickettsia peacockii str. Rustic] Length = 339 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 49/159 (30%), Positives = 81/159 (50%), Gaps = 20/159 (12%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+L N + + ++IVT TTR ++T + L+ V + DT GI E Sbjct: 55 VCIIGRPNNGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPK 114 Query: 282 DIVEKEGIKRTFLEVENADLILL-LKEINSKKEISF-------PKNIDFIFIGTKSDLYS 333 +EK ++ + + +ADL+LL + + S +I+ NI IF+ K D+ S Sbjct: 115 GSLEKAMVRCAWSSLHSADLVLLIIDSLRSFDDITHNILDKLRSLNIVPIFLLNKIDIES 174 Query: 334 TY--------TEEY-DHL---ISSFTGEGLEELINKIKS 360 Y TE + D L IS+ +G+ ++ L+ I S Sbjct: 175 KYLNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITS 213 >gi|189425185|ref|YP_001952362.1| GTP-binding protein EngA [Geobacter lovleyi SZ] gi|238692111|sp|B3E421|DER_GEOLS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|189421444|gb|ACD95842.1| small GTP-binding protein [Geobacter lovleyi SZ] Length = 449 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 43/162 (26%), Positives = 79/162 (48%), Gaps = 18/162 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280 + I+G N GKS+LFN + + AIV D+PG TRD ++ + DT G T Sbjct: 5 VAIVGRPNVGKSTLFNRIVGERRAIVDDMPGVTRDRNYAVVERYDKPFILVDTGGFEPVT 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN-----SKKEI-SFPKNID--FIFIGTKSDLY 332 +D + ++ +++ L +E AD+IL L + + E+ S + +D ++ K D Sbjct: 65 EDRMLQQMREQSLLAMEEADVILFLMDAKQGLTPADNEVASMLRRVDKPVFYVVNKVDGE 124 Query: 333 STYTEEYD---------HLISSFTGEGLEELINKIKSILSNK 365 E + H IS+ G+ +L+++I ++L ++ Sbjct: 125 KVENEAAEFYALGIDNMHTISAAHNRGIRDLLDEIMALLPDE 166 Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 3/87 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--- 278 I ++G N GKSSL N L + + + GTTRD + + DTAGIR Sbjct: 177 IAVVGRPNVGKSSLVNRLLGFERVVANPVAGTTRDSVDTFFTCNKKRYCLIDTAGIRRKG 236 Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL 305 +T +EK + +E AD+ L++ Sbjct: 237 KTSQKLEKYSVVDALKSIERADVALIV 263 >gi|289427265|ref|ZP_06428981.1| GTP-binding protein HflX [Propionibacterium acnes J165] gi|289159734|gb|EFD07922.1| GTP-binding protein HflX [Propionibacterium acnes J165] gi|332675421|gb|AEE72237.1| GTP-binding protein HflX [Propionibacterium acnes 266] Length = 483 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 55/190 (28%), Positives = 90/190 (47%), Gaps = 32/190 (16%) Query: 211 KLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLE 265 K + IRN + I+G++NAGKSSL N L + V A+ + TTR T D Sbjct: 253 KRADRIRNKVPSVAIVGYTNAGKSSLLNRLTRAGVLVENALFATLDPTTRRATTSD---- 308 Query: 266 GYLVKISDTAG-IRE-TDDIV-------EKEGIKRTFLEVENADLILLLKEINSKKEISF 316 G + ++DT G +R D+V E+ + L V +AD L ++++ + + Sbjct: 309 GRVYTLTDTVGFVRHLPHDLVEAFASTLEETAMADVLLHVVDADDPDPLGQVDAVRGVLS 368 Query: 317 ---PKNIDFIFIGTKSD---------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364 NI I + K D L ST+ Y L+S+ TGEG+++L+ I++ L Sbjct: 369 GIGASNIPEILVLNKIDRLSDETILTLRSTFPGAY--LVSAHTGEGIDKLVEAIEAGLPI 426 Query: 365 KFKKLPFSIP 374 +++ IP Sbjct: 427 PSQRVDVVIP 436 >gi|50842690|ref|YP_055917.1| GTP-binding protein EngA [Propionibacterium acnes KPA171202] gi|289428509|ref|ZP_06430193.1| ribosome-associated GTPase EngA [Propionibacterium acnes J165] gi|295130771|ref|YP_003581434.1| ribosome-associated GTPase EngA [Propionibacterium acnes SK137] gi|50840292|gb|AAT82959.1| putative GTP binding protein [Propionibacterium acnes KPA171202] gi|289158203|gb|EFD06422.1| ribosome-associated GTPase EngA [Propionibacterium acnes J165] gi|291376501|gb|ADE00356.1| ribosome-associated GTPase EngA [Propionibacterium acnes SK137] gi|313772016|gb|EFS37982.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL074PA1] gi|313807708|gb|EFS46195.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL087PA2] gi|313810216|gb|EFS47937.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL083PA1] gi|313818745|gb|EFS56459.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL046PA2] gi|313820515|gb|EFS58229.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL036PA1] gi|313822679|gb|EFS60393.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL036PA2] gi|313825388|gb|EFS63102.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL063PA1] gi|313830547|gb|EFS68261.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL007PA1] gi|313833583|gb|EFS71297.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL056PA1] gi|314924995|gb|EFS88826.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL036PA3] gi|314960338|gb|EFT04440.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL002PA2] gi|314973547|gb|EFT17643.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL053PA1] gi|314975769|gb|EFT19864.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL045PA1] gi|314978673|gb|EFT22767.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL072PA2] gi|314983751|gb|EFT27843.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL005PA1] gi|314987933|gb|EFT32024.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL005PA2] gi|314989743|gb|EFT33834.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL005PA3] gi|315080449|gb|EFT52425.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL078PA1] gi|315084779|gb|EFT56755.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL027PA2] gi|315085464|gb|EFT57440.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL002PA3] gi|315088479|gb|EFT60455.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL072PA1] gi|315095821|gb|EFT67797.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL038PA1] gi|315105878|gb|EFT77854.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL030PA1] gi|327326374|gb|EGE68164.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL096PA2] gi|327330445|gb|EGE72194.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL097PA1] gi|327331752|gb|EGE73489.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL096PA3] gi|327443529|gb|EGE90183.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL013PA2] gi|327445732|gb|EGE92386.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL043PA2] gi|327448285|gb|EGE94939.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL043PA1] gi|328754740|gb|EGF68356.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL020PA1] gi|328760937|gb|EGF74502.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL099PA1] gi|332675613|gb|AEE72429.1| GTP-binding protein EngA [Propionibacterium acnes 266] Length = 456 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 25/88 (28%), Positives = 44/88 (50%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+L N + + A+V D+PG TRD ++ D + G + DT G Sbjct: 24 VAVVGRPNVGKSTLVNRILGRRAAVVQDVPGVTRDRVSYDAEWSGRQFVLVDTGGWASDA 83 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN 309 + ++ L + AD +L + + N Sbjct: 84 SGMAAMIAEQAELAISTADAVLFVVDAN 111 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/100 (32%), Positives = 59/100 (59%), Gaps = 9/100 (9%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSL N +A+++ +V+DI GTT D + + + G + + DTAG+R+ Sbjct: 196 RVAIVGKPNVGKSSLLNRIARQNRVVVSDISGTTVDPVDELVTVGGTVYQFIDTAGLRKR 255 Query: 281 DDIVEKEGIK-----RTFLEVENADLILLLKEINSKKEIS 315 + E G + RT +E A++ +++ I++ + IS Sbjct: 256 --VKEASGHEYYASLRTQAAIERAEVCVVV--IDASESIS 291 >gi|314967527|gb|EFT11626.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL037PA1] Length = 456 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 25/88 (28%), Positives = 44/88 (50%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+L N + + A+V D+PG TRD ++ D + G + DT G Sbjct: 24 VAVVGRPNVGKSTLVNRILGRRAAVVQDVPGVTRDRVSYDAEWSGRQFVLVDTGGWASDA 83 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN 309 + ++ L + AD +L + + N Sbjct: 84 SGMAAMIAEQAELAISTADAVLFVVDAN 111 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/100 (32%), Positives = 59/100 (59%), Gaps = 9/100 (9%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSL N +A+++ +V+DI GTT D + + + G + + DTAG+R+ Sbjct: 196 RVAIVGKPNVGKSSLLNRIARQNRVVVSDISGTTVDPVDELVTVGGTVYQFIDTAGLRKR 255 Query: 281 DDIVEKEGIK-----RTFLEVENADLILLLKEINSKKEIS 315 + E G + RT +E A++ +++ I++ + IS Sbjct: 256 --VKEASGHEYYASLRTQAAIERAEVCVVV--IDASESIS 291 >gi|331654128|ref|ZP_08355128.1| putative histone [Escherichia coli M718] gi|331047510|gb|EGI19587.1| putative histone [Escherichia coli M718] Length = 290 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L +S HI + L ++ + I I+G S AGKSSL NAL + +V V+D+ TR+V Sbjct: 17 LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQ 75 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305 L G+ + I+D G+ E+ D E E + R L DL+L L Sbjct: 76 RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRNIL--SELDLVLWL 121 >gi|301344405|gb|ADK73963.1| HydF [Shewanella oneidensis] Length = 413 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 47/176 (26%), Positives = 78/176 (44%), Gaps = 32/176 (18%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIR 278 Y I ++G N+GKSSL N LA + ++IV+DI GTT D + +L+ V DTAGI Sbjct: 22 YHIALVGRRNSGKSSLLNMLAGQQISIVSDIKGTTTDAVAKAYELQPLGPVTFYDTAGID 81 Query: 279 E--TDDIVEKEGIKRTFLEVENADLIL-----------LLKEIN----------SKKEIS 315 + T + +R + A L++ L+ EI +K +I Sbjct: 82 DEGTLGAMRVSATRRVLFRSDMALLVVDEQGLCPSDMALIDEIRQLQMPILMVFNKADIC 141 Query: 316 FPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371 PK D F +S + ++S+ TG ++L + + ++K+ P Sbjct: 142 TPKAEDIAFCQNQSLPFI--------VVSAATGLAGKQLKQLMVELAPAEYKQEPL 189 >gi|146182630|ref|XP_001471040.1| GTP-binding protein enga [Tetrahymena thermophila] gi|146143797|gb|EDK31367.1| GTP-binding protein enga [Tetrahymena thermophila SB210] Length = 670 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 35/57 (61%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 +I I+G SN GKS+L N L +++ I D+ GTTRD + + G + + DT+GI Sbjct: 362 QISIIGRSNCGKSTLVNNLLQEERVIADDLAGTTRDAIKVQWAYRGRKIDLVDTSGI 418 Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 2/60 (3%) Query: 220 YKIVILGHSNAGKSSLFNALAKK--DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 Y I +G N GKSSLFN L++ + A+ +PG TRD + GY +++ DTAG+ Sbjct: 62 YTISFVGRPNVGKSSLFNKLSEDGMNKALTDRMPGLTRDRKEQITTILGYPLRLVDTAGV 121 >gi|331675666|ref|ZP_08376411.1| putative histone [Escherichia coli TA280] gi|331067160|gb|EGI38570.1| putative histone [Escherichia coli TA280] Length = 154 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 34/85 (40%), Positives = 47/85 (55%), Gaps = 3/85 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G S AGKSSL NAL + +V V+D+ TR+V L G+ + I+D G+ E+ Sbjct: 48 IGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQRFRLSGHGHSMVITDLPGVGESR 107 Query: 282 DI-VEKEGIKRTFLEVENADLILLL 305 D E E + R L DL+L L Sbjct: 108 DRDAEYEALYRDIL--PELDLVLWL 130 >gi|327327397|gb|EGE69173.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL103PA1] Length = 456 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 25/88 (28%), Positives = 44/88 (50%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+L N + + A+V D+PG TRD ++ D + G + DT G Sbjct: 24 VAVVGRPNVGKSTLVNRILGRRAAVVQDVPGVTRDRVSYDAEWSGRQFVLVDTGGWASDA 83 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN 309 + ++ L + AD +L + + N Sbjct: 84 SGMAAMIAEQAELAISTADAVLFVVDAN 111 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/100 (32%), Positives = 59/100 (59%), Gaps = 9/100 (9%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSL N +A+++ +V+DI GTT D + + + G + + DTAG+R+ Sbjct: 196 RVAIVGKPNVGKSSLLNRIARQNRVVVSDISGTTVDPVDELVTVGGTVYQFIDTAGLRKR 255 Query: 281 DDIVEKEGIK-----RTFLEVENADLILLLKEINSKKEIS 315 + E G + RT +E A++ +++ I++ + IS Sbjct: 256 --VKEASGHEYYASLRTQAAIERAEVCVVV--IDASESIS 291 >gi|282853835|ref|ZP_06263172.1| ribosome-associated GTPase EngA [Propionibacterium acnes J139] gi|282583288|gb|EFB88668.1| ribosome-associated GTPase EngA [Propionibacterium acnes J139] gi|314981499|gb|EFT25593.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL110PA3] gi|315092162|gb|EFT64138.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL110PA4] Length = 456 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 25/88 (28%), Positives = 44/88 (50%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+L N + + A+V D+PG TRD ++ D + G + DT G Sbjct: 24 VAVVGRPNVGKSTLVNRILGRRAAVVQDVPGVTRDRVSYDAEWSGRQFVLVDTGGWASDA 83 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN 309 + ++ L + AD +L + + N Sbjct: 84 SGMAAMIAEQAELAISTADAVLFVVDAN 111 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/100 (32%), Positives = 59/100 (59%), Gaps = 9/100 (9%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSL N +A+++ +V+DI GTT D + + + G + + DTAG+R+ Sbjct: 196 RVAIVGKPNVGKSSLLNRIARQNRVVVSDISGTTVDPVDELVTVGGTVYQFIDTAGLRKR 255 Query: 281 DDIVEKEGIK-----RTFLEVENADLILLLKEINSKKEIS 315 + E G + RT +E A++ +++ I++ + IS Sbjct: 256 --VKEASGHEYYASLRTQAAIERAEVCVVV--IDASESIS 291 >gi|148240062|ref|YP_001225449.1| GTP-binding protein Era [Synechococcus sp. WH 7803] gi|147848601|emb|CAK24152.1| GTP-binding protein era homolog [Synechococcus sp. WH 7803] Length = 312 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 41/195 (21%), Positives = 83/195 (42%), Gaps = 24/195 (12%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R+G+ + ++G N GKS+L N L VAI + + TTR+ L L + + + DT G Sbjct: 11 RSGF-VALIGRPNVGKSTLVNQLVGDKVAITSPVAQTTRNRLRAILTTDEAQLILVDTPG 69 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKE------------INSKKEISFPKNI---- 320 I + ++ + ++ + D +LLL E +N ++ P + Sbjct: 70 IHKPHHLLGERLVQSARSAIGEVDQVLLLLEGCEPPGRGDAFIVNLLRQQRLPVQVVLNK 129 Query: 321 -DFIFIGTKSDLYSTYTEEYD------HLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373 D + + + + Y + H + TGEG EL+ + +++ + P + Sbjct: 130 WDQVPTAQRPEADAAYRDLLAESGWPIHHCCALTGEGCPELVQAVSALMPEGPQLYPPEM 189 Query: 374 PSHKRHLYHLSQTVR 388 S + +++ +R Sbjct: 190 VSDQPERLLMAELIR 204 >gi|314923527|gb|EFS87358.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL001PA1] gi|314966574|gb|EFT10673.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL082PA2] gi|315092905|gb|EFT64881.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL060PA1] gi|315103573|gb|EFT75549.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL050PA2] Length = 456 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 25/88 (28%), Positives = 44/88 (50%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+L N + + A+V D+PG TRD ++ D + G + DT G Sbjct: 24 VAVVGRPNVGKSTLVNRILGRRAAVVQDVPGVTRDRVSYDAEWSGRQFVLVDTGGWASDA 83 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN 309 + ++ L + AD +L + + N Sbjct: 84 SGMAAMIAEQAELAISTADAVLFVVDAN 111 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/100 (32%), Positives = 59/100 (59%), Gaps = 9/100 (9%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKSSL N +A+++ +V+DI GTT D + + + G + + DTAG+R+ Sbjct: 196 RVAIVGKPNVGKSSLLNRIARQNRVVVSDISGTTVDPVDELVTVGGTVYQFIDTAGLRKR 255 Query: 281 DDIVEKEGIK-----RTFLEVENADLILLLKEINSKKEIS 315 + E G + RT +E A++ +++ I++ + IS Sbjct: 256 --VKEASGHEYYASLRTQAAIERAEVCVVV--IDASESIS 291 >gi|313837716|gb|EFS75430.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL037PA2] gi|314927402|gb|EFS91233.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL044PA1] gi|314972655|gb|EFT16752.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL037PA3] gi|328907486|gb|EGG27252.1| GTP-binding protein EngA [Propionibacterium sp. P08] Length = 456 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 25/88 (28%), Positives = 44/88 (50%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+L N + + A+V D+PG TRD ++ D + G + DT G Sbjct: 24 VAVVGRPNVGKSTLVNRILGRRAAVVQDVPGVTRDRVSYDAEWSGRQFVLVDTGGWASDA 83 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN 309 + ++ L + AD +L + + N Sbjct: 84 SGMAAMIAEQAELAISTADAVLFVVDAN 111 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 66/125 (52%), Gaps = 16/125 (12%) Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255 I L D +SH S ++ I+G N GKSSL N +A+++ +V+DI GTT Sbjct: 178 IAVLPKDRTSHESSD-------GPRRVAIVGKPNVGKSSLLNRIARQNRVVVSDISGTTV 230 Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIK-----RTFLEVENADLILLLKEINS 310 D + + + G + + DTAG+R+ + E G + RT +E A++ +++ +++ Sbjct: 231 DPVDELVTVGGTVYQFIDTAGLRKR--VKEASGHEYYASLRTQAAIERAEVCVVV--VDA 286 Query: 311 KKEIS 315 + IS Sbjct: 287 SESIS 291 >gi|308174076|ref|YP_003920781.1| GTPase [Bacillus amyloliquefaciens DSM 7] gi|307606940|emb|CBI43311.1| GTPase essential for ribosome 50S subunit assembly [Bacillus amyloliquefaciens DSM 7] gi|328552798|gb|AEB23290.1| GTP-binding protein Der [Bacillus amyloliquefaciens TA208] gi|328912406|gb|AEB64002.1| GTPase essential for ribosome 50S subunit assembly [Bacillus amyloliquefaciens LL3] Length = 436 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 27/94 (28%), Positives = 53/94 (56%), Gaps = 2/94 (2%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN +A + ++IV D PG TRD + + Y + DT GI D Sbjct: 6 VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + + ++ + ++ AD+I+ + +N ++ ++ Sbjct: 66 EPFLTQIRQQAEIAMDEADVIIFM--VNGREGVT 97 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 3/85 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G N GKSSL NA+ ++ IV+++ GTTRD + I DTAG+R+ Sbjct: 177 QFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTAFTYNQQEFVIVDTAGMRKK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLI 302 + EK + R ++ +D++ Sbjct: 237 GKVYETTEKYSVLRALKAIDRSDVV 261 >gi|313807506|gb|EFS45993.1| GTP-binding protein HflX [Propionibacterium acnes HL087PA2] gi|313818548|gb|EFS56262.1| GTP-binding protein HflX [Propionibacterium acnes HL046PA2] gi|313820315|gb|EFS58029.1| GTP-binding protein HflX [Propionibacterium acnes HL036PA1] gi|313822878|gb|EFS60592.1| GTP-binding protein HflX [Propionibacterium acnes HL036PA2] gi|313825190|gb|EFS62904.1| GTP-binding protein HflX [Propionibacterium acnes HL063PA1] gi|314925202|gb|EFS89033.1| GTP-binding protein HflX [Propionibacterium acnes HL036PA3] gi|314960015|gb|EFT04117.1| GTP-binding protein HflX [Propionibacterium acnes HL002PA2] gi|314978437|gb|EFT22531.1| GTP-binding protein HflX [Propionibacterium acnes HL072PA2] gi|314988138|gb|EFT32229.1| GTP-binding protein HflX [Propionibacterium acnes HL005PA2] gi|314989942|gb|EFT34033.1| GTP-binding protein HflX [Propionibacterium acnes HL005PA3] gi|315084326|gb|EFT56302.1| GTP-binding protein HflX [Propionibacterium acnes HL027PA2] gi|315085668|gb|EFT57644.1| GTP-binding protein HflX [Propionibacterium acnes HL002PA3] gi|315088910|gb|EFT60886.1| GTP-binding protein HflX [Propionibacterium acnes HL072PA1] gi|327331951|gb|EGE73688.1| GTP-binding protein HflX [Propionibacterium acnes HL096PA3] gi|327443152|gb|EGE89806.1| GTP-binding protein HflX [Propionibacterium acnes HL013PA2] gi|328753483|gb|EGF67099.1| GTP-binding protein HflX [Propionibacterium acnes HL020PA1] Length = 493 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 55/190 (28%), Positives = 90/190 (47%), Gaps = 32/190 (16%) Query: 211 KLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLE 265 K + IRN + I+G++NAGKSSL N L + V A+ + TTR T D Sbjct: 263 KRADRIRNKVPSVAIVGYTNAGKSSLLNRLTRAGVLVENALFATLDPTTRRATTSD---- 318 Query: 266 GYLVKISDTAG-IRE-TDDIV-------EKEGIKRTFLEVENADLILLLKEINSKKEISF 316 G + ++DT G +R D+V E+ + L V +AD L ++++ + + Sbjct: 319 GRVYTLTDTVGFVRHLPHDLVEAFASTLEETAMADVLLHVVDADDPDPLGQVDAVRGVLS 378 Query: 317 ---PKNIDFIFIGTKSD---------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364 NI I + K D L ST+ Y L+S+ TGEG+++L+ I++ L Sbjct: 379 GIGASNIPEILVLNKIDRLSDETILTLRSTFPGAY--LVSAHTGEGIDKLVEAIEAGLPI 436 Query: 365 KFKKLPFSIP 374 +++ IP Sbjct: 437 PSQRVDVVIP 446 >gi|260856464|ref|YP_003230355.1| hypothetical protein ECO26_3414 [Escherichia coli O26:H11 str. 11368] gi|257755113|dbj|BAI26615.1| hypothetical protein ECO26_3414 [Escherichia coli O26:H11 str. 11368] Length = 358 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L +S HI + L ++ + I I+G S AGKSSL NAL + +V V+D+ TR+V Sbjct: 85 LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 143 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305 L G+ + I+D G+ E+ D E E + R L DL+L L Sbjct: 144 RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 189 >gi|50842504|ref|YP_055731.1| GTP-binding protein [Propionibacterium acnes KPA171202] gi|50840106|gb|AAT82773.1| GTP-binding protein [Propionibacterium acnes KPA171202] Length = 483 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 55/190 (28%), Positives = 90/190 (47%), Gaps = 32/190 (16%) Query: 211 KLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLE 265 K + IRN + I+G++NAGKSSL N L + V A+ + TTR T D Sbjct: 253 KRADRIRNKVPSVAIVGYTNAGKSSLLNRLTRAGVLVENALFATLDPTTRRATTSD---- 308 Query: 266 GYLVKISDTAG-IRE-TDDIV-------EKEGIKRTFLEVENADLILLLKEINSKKEISF 316 G + ++DT G +R D+V E+ + L V +AD L ++++ + + Sbjct: 309 GRVYTLTDTVGFVRHLPHDLVEAFASTLEETAMADVLLHVVDADDPDPLGQVDAVRGVLS 368 Query: 317 ---PKNIDFIFIGTKSD---------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364 NI I + K D L ST+ Y L+S+ TGEG+++L+ I++ L Sbjct: 369 GIGASNIPEILVLNKIDRLSDETILTLRSTFPGAY--LVSAHTGEGIDKLVEAIEAGLPI 426 Query: 365 KFKKLPFSIP 374 +++ IP Sbjct: 427 PSQRVDVVIP 436 >gi|315923956|ref|ZP_07920184.1| GTP-binding protein [Pseudoramibacter alactolyticus ATCC 23263] gi|315622796|gb|EFV02749.1| GTP-binding protein [Pseudoramibacter alactolyticus ATCC 23263] Length = 410 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 43/171 (25%), Positives = 86/171 (50%), Gaps = 16/171 (9%) Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL- 258 + I + +++ LGE + G+ G NAGKSSL NA+ + +A+V++ GTT D + Sbjct: 7 EGSIVATLNETPLGERVHIGF----FGRRNAGKSSLVNAVTGQAMAVVSETAGTTTDPVE 62 Query: 259 -TIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------INSK 311 T++L G ++ I DT G + + EK + R ++ D+ +L+ + + + Sbjct: 63 KTMELLPIGPVL-IIDTPGTDDVGALGEKR-VARAREVLDRTDIAVLVVDGAVGLTADDR 120 Query: 312 KEISF--PKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKS 360 + ++ K + ++ + K D+ S +S+ TGEG+E ++ + Sbjct: 121 RLLALFEEKQVPYLVVMNKCDVGSARMPADSIAVSARTGEGIEAFKKRLAA 171 >gi|296332978|ref|ZP_06875435.1| GTP-binding protein EngA [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674918|ref|YP_003866590.1| ribosome 50S subunit assembly GTPase [Bacillus subtilis subsp. spizizenii str. W23] gi|296149829|gb|EFG90721.1| GTP-binding protein EngA [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413162|gb|ADM38281.1| GTPase essential for ribosome 50S subunit assembly [Bacillus subtilis subsp. spizizenii str. W23] Length = 436 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 27/94 (28%), Positives = 53/94 (56%), Gaps = 2/94 (2%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN +A + ++IV D PG TRD + + Y + DT GI D Sbjct: 6 VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + + ++ + ++ AD+I+ + +N ++ ++ Sbjct: 66 EPFLAQIRQQAEIAMDEADVIIFM--VNGREGVT 97 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 3/85 (3%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 ++G N GKSSL NA+ ++ IV+++ GTTRD + I DTAG+R+ + Sbjct: 180 LIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTAFTYNQQEFVIVDTAGMRKKGKV 239 Query: 284 ---VEKEGIKRTFLEVENADLILLL 305 EK + R ++ ++++ ++ Sbjct: 240 YETTEKYSVLRALKAIDRSEVVAVV 264 >gi|124515035|gb|EAY56546.1| GTP-binding protein (EngA) [Leptospirillum rubarum] Length = 466 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 44/141 (31%), Positives = 65/141 (46%), Gaps = 10/141 (7%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ILG N GKS+LFN L + AIV D PG TRD + ++ DT GI D Sbjct: 8 IAILGRPNVGKSTLFNRLLSRREAIVEDRPGVTRDRHYSQGTIGRKSFRLVDTGGILFGD 67 Query: 282 DIVEKEGI-KRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTY----- 335 D E I K+ +E AD ++ + + +E P + D I +S S + Sbjct: 68 DHPLGESIRKQALFALEEADAVIYVMD---GREGYLPVDADVIGRIRRSGKPSVFAVNKV 124 Query: 336 -TEEYDHLISSFTGEGLEELI 355 T + + +++ F G+ LI Sbjct: 125 DTVKTEEVLADFHRHGVAPLI 145 Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 6/89 (6%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ ++G N GKS+L N L ++ + + IPGTTRD + + DTAG+R+ Sbjct: 202 RVAVIGRPNVGKSTLVNRLLGEERLVTSPIPGTTRDAIDTLVTFRDKTYHFVDTAGLRKK 261 Query: 281 DDIVEKEGI------KRTFLEVENADLIL 303 + E + R LE E A ++L Sbjct: 262 GKVAEASELYAQIRTDRAILESEIAVVLL 290 >gi|282864448|ref|ZP_06273504.1| small GTP-binding protein [Streptomyces sp. ACTE] gi|282560935|gb|EFB66481.1| small GTP-binding protein [Streptomyces sp. ACTE] Length = 489 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 26/58 (44%), Positives = 35/58 (60%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 +I ++G N GKSSL N +A +D +V + GTTRD + + L G K DTAGIR Sbjct: 228 RIALIGRPNVGKSSLLNKVAGEDRVVVNALAGTTRDPVDELIQLGGITWKFIDTAGIR 285 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 1/69 (1%) Query: 209 QGKLGEIIRNGYKIV-ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267 +G LGE ++ ++G N GKS+L N + + A+V D PG TRD ++ + + G Sbjct: 40 EGALGEAGHGPLPVLAVVGRPNVGKSTLVNRIIGRREAVVQDKPGVTRDRVSYEAEWAGR 99 Query: 268 LVKISDTAG 276 K+ DT G Sbjct: 100 RFKVVDTGG 108 >gi|154686532|ref|YP_001421693.1| GTP-binding protein EngA [Bacillus amyloliquefaciens FZB42] gi|166224304|sp|A7Z636|DER_BACA2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|154352383|gb|ABS74462.1| EngA [Bacillus amyloliquefaciens FZB42] Length = 436 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 27/94 (28%), Positives = 53/94 (56%), Gaps = 2/94 (2%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN +A + ++IV D PG TRD + + Y + DT GI D Sbjct: 6 VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + + ++ + ++ AD+I+ + +N ++ ++ Sbjct: 66 EPFLTQIRQQAEIAMDEADVIIFM--VNGREGVT 97 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 3/85 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G N GKSSL NA+ ++ IV+++ GTTRD + I DTAG+R+ Sbjct: 177 QFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTAFTYNQQEFVIVDTAGMRKK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLI 302 + EK + R ++ +D++ Sbjct: 237 GKVYETTEKYSVLRALKAIDRSDVV 261 >gi|309703375|emb|CBJ02713.1| putative GTP-binding protein [Escherichia coli ETEC H10407] Length = 348 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L +S HI + L ++ + I I+G S AGKSSL NAL + +V V+D+ TR+V Sbjct: 75 LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQ 133 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305 L G+ + I+D G+ E+ D E E + R L DL+L L Sbjct: 134 RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 179 >gi|149923267|ref|ZP_01911677.1| GTP-binding protein [Plesiocystis pacifica SIR-1] gi|149815864|gb|EDM75384.1| GTP-binding protein [Plesiocystis pacifica SIR-1] Length = 360 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 47/215 (21%), Positives = 83/215 (38%), Gaps = 45/215 (20%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273 + R+G+ + + G N GKS+L NAL +++A+ T +P TTR+ + + + D Sbjct: 26 QAFRSGF-VALCGRPNVGKSTLLNALLGEELAVATALPQTTRERMLGIWTSPRFQAVLVD 84 Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI----------------------NSK 311 T GI + + K ++ + D+IL+L E+ + Sbjct: 85 TPGIHKPKSALNKYMVEEAVRGARDVDVILMLAEVPRVPRGKDGHALIQEWEPGPGAKAA 144 Query: 312 KEISFPKNIDFIFIGTKSDLYSTYTEEYDHL------------------ISSFTGEGLEE 353 E+ P + + TK DL E D L +S+ G GLE Sbjct: 145 VELLAPLGKPMVLVLTKCDLLG----ERDWLLPIIQRWQAIHAFAGVVPVSAVQGRGLEA 200 Query: 354 LINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388 L +++ L S + +H S+ +R Sbjct: 201 LREEVEGALPEGPAYYADDQLSDRSMRWHASELIR 235 >gi|323702013|ref|ZP_08113682.1| small GTP-binding protein [Desulfotomaculum nigrificans DSM 574] gi|323533099|gb|EGB22969.1| small GTP-binding protein [Desulfotomaculum nigrificans DSM 574] Length = 409 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 35/89 (39%), Positives = 54/89 (60%), Gaps = 2/89 (2%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAG 276 N I I G NAGKSSL N+L +D+A+V++I GTT D + ++ L V I DTAG Sbjct: 11 NRLHIAIFGRRNAGKSSLINSLTNQDIAVVSNIAGTTTDPVYKSMEILPIGPVVIIDTAG 70 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL 305 I + + E ++++ ++ ADL+LL+ Sbjct: 71 IDDVGLLGELR-VEKSKEVLKKADLVLLV 98 >gi|148265177|ref|YP_001231883.1| GTP-binding protein EngA [Geobacter uraniireducens Rf4] gi|189037149|sp|A5G692|DER_GEOUR RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|146398677|gb|ABQ27310.1| small GTP-binding protein [Geobacter uraniireducens Rf4] Length = 441 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 32/116 (27%), Positives = 58/116 (50%), Gaps = 6/116 (5%) Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252 +ND++ +++ + +G + KI ++G N GKS+L N L + + PG Sbjct: 152 VNDLM---DEVIKALPKGSAADTDEEVTKIAVIGRPNVGKSTLVNRLLGIERVVANPTPG 208 Query: 253 TTRDVLTIDLDLEGYLVKISDTAGIR---ETDDIVEKEGIKRTFLEVENADLILLL 305 TTRD + + DTAGIR +T + +EK + + +E AD++L++ Sbjct: 209 TTRDSIDTYFTCNRKRYLLIDTAGIRRKGKTTEKIEKYSVVDSLRSIERADVVLIV 264 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 I I+G N GKS+LFN + + A+V D+PG TRD ++D + DT G ET Sbjct: 5 IAIVGRPNVGKSTLFNRIVGRRKAMVDDMPGVTRDRNYANVDRFDVPFILIDTGGFEPET 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 +D + ++ +++ L + AD+IL + Sbjct: 65 NDRLLQQMREQSQLAMAEADVILFV 89 >gi|319790169|ref|YP_004151802.1| GTP-binding protein Era [Thermovibrio ammonificans HB-1] gi|317114671|gb|ADU97161.1| GTP-binding protein Era [Thermovibrio ammonificans HB-1] Length = 305 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 1/89 (1%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R+GY + ILG N GKS+L N+L VAIVTD P TTR + L+ + DT G Sbjct: 8 RSGY-VAILGRPNVGKSTLLNSLLGTKVAIVTDKPQTTRHRIVGVKHLKDAQIVFLDTPG 66 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL 305 I + + + + F V +AD+IL L Sbjct: 67 IHKEKFELNRYMNEIAFSVVPDADIILFL 95 >gi|283783291|ref|YP_003374045.1| ribosome-associated GTPase EngA [Gardnerella vaginalis 409-05] gi|283441128|gb|ADB13594.1| ribosome-associated GTPase EngA [Gardnerella vaginalis 409-05] Length = 734 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 44/84 (52%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS+L N + VA+V D PG TRD ++ D + G K+ DT G Sbjct: 300 IAIIGRPNVGKSTLVNRILGHRVAVVEDTPGVTRDRVSYDAEWAGTNFKLVDTGGWEADV 359 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + ++ ++ + V +D ++ L Sbjct: 360 EGIDSSIAQQAQIAVRLSDAVIFL 383 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 7/90 (7%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGIR 278 ++ ++G N GKSSL N LA ++ ++V D+ GTTRD + + +D E +L DTAGI+ Sbjct: 474 RVALVGRPNVGKSSLLNHLAHEERSVVNDLAGTTRDPVDEVVRVDGEDWL--FIDTAGIK 531 Query: 279 ETDDIV---EKEGIKRTFLEVENADLILLL 305 + E RT +E ++L L+L Sbjct: 532 RRQHKLTGAEYYSSLRTQAAIERSELALIL 561 >gi|260435524|ref|ZP_05789494.1| GTP-binding protein Era [Synechococcus sp. WH 8109] gi|260413398|gb|EEX06694.1| GTP-binding protein Era [Synechococcus sp. WH 8109] Length = 311 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 1/96 (1%) Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 L E R+G+ I ++G N GKS+L N L + VAI + + TTR+ L L +E + + Sbjct: 6 LPEDYRSGF-IALIGRPNVGKSTLVNQLVGEKVAITSPVAQTTRNRLRAVLTMEVAQMVL 64 Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307 DT GI + ++ + +K + DL++LL E Sbjct: 65 VDTPGIHKPHHLLGERLVKSARSAIGEVDLVVLLLE 100 >gi|237668706|ref|ZP_04528690.1| ferrous iron transport protein B [Clostridium butyricum E4 str. BoNT E BL5262] gi|237657054|gb|EEP54610.1| ferrous iron transport protein B [Clostridium butyricum E4 str. BoNT E BL5262] Length = 589 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 9/84 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL--VKISDTAGIRE 279 + +LG+ N GK++L+N L + V + PG T D EGY VK++D GI Sbjct: 4 VALLGNPNVGKTTLYNELTGSN-QYVGNWPGVTVD------KKEGYFEDVKVADLPGIYA 56 Query: 280 TDDIVEKEGIKRTFLEVENADLIL 303 D +E + + +LE EN D+IL Sbjct: 57 MDTFSNEEKVSKKYLEEENVDVIL 80 >gi|298252771|ref|ZP_06976565.1| GTPase [Gardnerella vaginalis 5-1] gi|297533135|gb|EFH72019.1| GTPase [Gardnerella vaginalis 5-1] Length = 734 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 32/55 (58%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 I I+G N GKS+L N + VA+V D PG TRD ++ D + G K+ DT G Sbjct: 300 IAIIGRPNVGKSTLVNRILGHRVAVVEDTPGVTRDRVSYDAEWAGTNFKLVDTGG 354 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 7/90 (7%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGIR 278 ++ ++G N GKSSL N LA ++ ++V D+ GTTRD + + +D E +L DTAGI+ Sbjct: 474 RVALVGRPNVGKSSLLNHLAHEERSVVNDLAGTTRDPVDEVVRVDGEDWL--FIDTAGIK 531 Query: 279 ETDDIV---EKEGIKRTFLEVENADLILLL 305 + E RT +E ++L L+L Sbjct: 532 RRQHKLTGAEYYSSLRTQAAIERSELALIL 561 >gi|297243478|ref|ZP_06927410.1| GTPase [Gardnerella vaginalis AMD] gi|296888523|gb|EFH27263.1| GTPase [Gardnerella vaginalis AMD] Length = 734 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 32/55 (58%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 I I+G N GKS+L N + VA+V D PG TRD ++ D + G K+ DT G Sbjct: 300 IAIIGRPNVGKSTLVNRILGHRVAVVEDTPGVTRDRVSYDAEWAGTNFKLVDTGG 354 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 7/90 (7%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGIR 278 ++ ++G N GKSSL N LA ++ ++V D+ GTTRD + + +D E +L DTAGI+ Sbjct: 474 RVALVGRPNVGKSSLLNHLAHEERSVVNDLAGTTRDPVDEVVRVDGEDWL--FIDTAGIK 531 Query: 279 ETDDIV---EKEGIKRTFLEVENADLILLL 305 + E RT +E ++L L+L Sbjct: 532 RRQHKLTGAEYYSSLRTQAAIERSELALIL 561 >gi|160903293|ref|YP_001568874.1| small GTP-binding protein [Petrotoga mobilis SJ95] gi|160360937|gb|ABX32551.1| small GTP-binding protein [Petrotoga mobilis SJ95] Length = 398 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 45/143 (31%), Positives = 74/143 (51%), Gaps = 8/143 (5%) Query: 218 NGYK--IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDT 274 +GY+ I I G N GKSSL NA+ +++A+V+++ GTT D + ++L+ V + DT Sbjct: 5 SGYRTYIAIAGRRNVGKSSLINAIVNQEIALVSNVAGTTTDPVYKSMELQPIGPVTLIDT 64 Query: 275 AGIRETDDIVEK--EGIKRTFLEVENADLILLLKEINSKKEIS--FPK-NIDFIFIGTKS 329 GI + ++ +K E KR F + + L++ + + I F K NI FI + K Sbjct: 65 PGIDDEGELGKKRIERAKRAFYKADVGVLVVDSEPNGFEHSICDLFEKMNIPFIIVLNKI 124 Query: 330 DLYSTYTEEYDHLISSFTGEGLE 352 D + + I+SF LE Sbjct: 125 DQLNNVSNLKQLYINSFGRPVLE 147 >gi|325962917|ref|YP_004240823.1| GTP-binding protein Era [Arthrobacter phenanthrenivorans Sphe3] gi|323469004|gb|ADX72689.1| GTP-binding protein Era [Arthrobacter phenanthrenivorans Sphe3] Length = 516 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 3/92 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I ++G N GKSSL N LA + +V + GTTRD + ++L G + DTAGIR Sbjct: 255 RIALIGRPNVGKSSLLNKLAGTERVVVDNTAGTTRDPVDEFIELGGRTWRFVDTAGIRRR 314 Query: 281 DDIVEKEGIK---RTFLEVENADLILLLKEIN 309 + + RT +E A++ ++L ++ Sbjct: 315 QHMAQGADFYASLRTQAALEKAEVAVVLLAVD 346 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 39/160 (24%), Positives = 67/160 (41%), Gaps = 21/160 (13%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+L N + + A+V D PG TRD + + G + DT G Sbjct: 81 LAIIGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVMYSANWNGRNFTLVDTGGWEHDA 140 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI----------------NSKKEISFPKNI--DFI 323 + ++ + VE AD +L + + SKK + N DF Sbjct: 141 RGIHARVAEQAEMAVELADAVLFVVDSAVGATATDEGVMKMLRRSKKPVIMVANKVDDFA 200 Query: 324 FIGTKSDLYS-TYTEEYDHLISSFTGEGLEELINKIKSIL 362 + L+ + E Y +S+ G G+ +L++ + +L Sbjct: 201 QEADSATLWGLGFGEPYP--VSALHGRGVADLLDHVMDVL 238 >gi|218696652|ref|YP_002404319.1| conserved hypothetical protein with GTPase domain [Escherichia coli 55989] gi|218353384|emb|CAU99418.1| conserved hypothetical protein with GTPase domain [Escherichia coli 55989] Length = 303 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L +S HI + L ++ + I I+G S AGKSSL NAL + +V V+D+ TR+V Sbjct: 30 LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQ 88 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305 L G+ + I+D G+ E+ D E E + R L DL+L L Sbjct: 89 RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 134 >gi|257791391|ref|YP_003181997.1| GTP-binding protein Era [Eggerthella lenta DSM 2243] gi|325831362|ref|ZP_08164616.1| ribosome biogenesis GTPase Era [Eggerthella sp. HGA1] gi|257475288|gb|ACV55608.1| GTP-binding protein Era [Eggerthella lenta DSM 2243] gi|325486616|gb|EGC89064.1| ribosome biogenesis GTPase Era [Eggerthella sp. HGA1] Length = 307 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 44/174 (25%), Positives = 85/174 (48%), Gaps = 26/174 (14%) Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 +G+ ++G+ + ++G NAGKS+L NA+ K +AI ++ TTR L EG+ + + Sbjct: 8 VGDSFKSGF-VTLVGRPNAGKSTLINAIMGKKIAITSNTAQTTRHRFRAVLTREGFQLIL 66 Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILL------------------LKEINSKKE 313 DT G+ + D + +E +E+ D++ LK SKK Sbjct: 67 VDTPGLHKPHDALGEELNTSALKALEDVDVVAFLVDASKPVGTGDEWVAAQLKRARSKKI 126 Query: 314 ISFPKNIDFIFIGTKSD---LYSTYTEEYDHLI--SSFTGEGLEELINKIKSIL 362 + K ID + G + D + ++D ++ SS TGE +++ ++++ ++L Sbjct: 127 LVLSK-IDLV-DGEQLDRQRFAAAQLGDWDAVVELSSQTGEHVQDFVDEVVALL 178 >gi|331640795|ref|ZP_08341930.1| conserved hypothetical protein [Escherichia coli H736] gi|331037593|gb|EGI09813.1| conserved hypothetical protein [Escherichia coli H736] Length = 303 Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L +S HI + L ++ + I I+G S AGKSSL NAL + +V V+D+ TR+V Sbjct: 30 LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQ 88 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305 L G+ + I+D G+ E+ D E E + R L DL+L L Sbjct: 89 RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 134 >gi|328957352|ref|YP_004374738.1| GTP-binding protein EngA [Carnobacterium sp. 17-4] gi|328673676|gb|AEB29722.1| GTP-binding protein EngA [Carnobacterium sp. 17-4] Length = 437 Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 50/89 (56%), Gaps = 4/89 (4%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRE 279 K ++G N GKSSL NA+ +D IV+ I GTTRD + T + +G + DTAG+R+ Sbjct: 177 KFSLIGRPNVGKSSLVNAILGEDRVIVSSIAGTTRDAIDTAFVGEDGTEFVMIDTAGMRK 236 Query: 280 TDDI---VEKEGIKRTFLEVENADLILLL 305 + E+ + R +E +D++L + Sbjct: 237 KGKVYENTERYSVLRALRAIERSDVVLCV 265 Score = 45.1 bits (105), Expect = 0.020, Method: Compositional matrix adjust. Identities = 24/87 (27%), Positives = 47/87 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN + + ++IV D+ G TRD + + G + DT GI D Sbjct: 6 VAIVGRPNVGKSTIFNRIVGERISIVEDVSGVTRDRIYAPAEWLGKEFNVIDTGGIDLGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI 308 + ++ + + ++ AD+I+ + + Sbjct: 66 EPFLEQIKYQAEIAMDEADVIIFITSV 92 >gi|229494892|ref|ZP_04388645.1| ribosome-associated GTPase EngA [Rhodococcus erythropolis SK121] gi|229318250|gb|EEN84118.1| ribosome-associated GTPase EngA [Rhodococcus erythropolis SK121] Length = 475 Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 45/84 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+L N + + A+V DIPG TRD ++ + + G + DT G Sbjct: 41 LAVVGRPNVGKSTLVNRIIGRREAVVEDIPGVTRDRVSYEANWAGRRFLVQDTGGWEPDA 100 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 +++ ++ L + AD ILL+ Sbjct: 101 KGLQQAVARQAELAMGTADAILLV 124 Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust. Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 13/106 (12%) Query: 211 KLGEIIRNG------YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL 264 KL E R G ++ ++G N GKSSL N L+ + ++V ++ GTT D + ++L Sbjct: 197 KLPETPREGIPGGGPRRVALVGKPNVGKSSLLNKLSGDERSVVHNVAGTTVDPVDSIVEL 256 Query: 265 EGYLVKISDTAGIRETDDIVEKEGIK-----RTFLEVENADLILLL 305 G + DTAG+R+ + G + RT +E A++ +LL Sbjct: 257 GGRPWRFVDTAGLRKR--VSHASGAEFYASLRTKSAIEAAEVAILL 300 >gi|145220317|ref|YP_001131026.1| GTP-binding protein Era [Prosthecochloris vibrioformis DSM 265] gi|145206481|gb|ABP37524.1| GTP-binding protein Era [Chlorobium phaeovibrioides DSM 265] Length = 308 Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 75/166 (45%), Gaps = 28/166 (16%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 I+G NAGKS+L NAL ++IVT P TTR +T + + DT GI E Sbjct: 16 IIGPPNAGKSTLLNALLDCKLSIVTHKPQTTRKKITGIYSDDSTQIIFLDTPGIMEPQQK 75 Query: 284 VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNI--------------DFIFIGTKS 329 + + +K T +++AD I+ L SKK F + I + KS Sbjct: 76 LHEAMLKVTRDTLKDADAIIALLPF-SKKNGPFDRAFAEELHRDWLKNSGKPLIAVFNKS 134 Query: 330 DLYSTYTE---------EYDHL----ISSFTGEGLEELINKIKSIL 362 DL + + E++ IS+ G+GL+EL++ ++ L Sbjct: 135 DLVNAEQQKEAEAFIRREWNPAAILSISALNGKGLQELVDALRPYL 180 >gi|226306741|ref|YP_002766701.1| GTP-binding protein EngA [Rhodococcus erythropolis PR4] gi|226185858|dbj|BAH33962.1| probable GTP-binding protein EngA [Rhodococcus erythropolis PR4] Length = 475 Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 45/84 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+L N + + A+V DIPG TRD ++ + + G + DT G Sbjct: 41 LAVVGRPNVGKSTLVNRIIGRREAVVEDIPGVTRDRVSYEANWAGRRFLVQDTGGWEPDA 100 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 +++ ++ L + AD ILL+ Sbjct: 101 KGLQQAVARQAELAMGTADAILLV 124 Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust. Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 13/106 (12%) Query: 211 KLGEIIRNG------YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL 264 KL E R G ++ ++G N GKSSL N L+ + ++V ++ GTT D + ++L Sbjct: 197 KLPETPREGIPGGGPRRVALVGKPNVGKSSLLNKLSGDERSVVHNVAGTTVDPVDSIVEL 256 Query: 265 EGYLVKISDTAGIRETDDIVEKEGIK-----RTFLEVENADLILLL 305 G + DTAG+R+ + G + RT +E A++ +LL Sbjct: 257 GGRPWRFVDTAGLRKR--VSHASGAEFYASLRTKSAIEAAEVAILL 300 >gi|126656519|ref|ZP_01727780.1| iron(II) transporter [Cyanothece sp. CCY0110] gi|126622205|gb|EAZ92912.1| iron(II) transporter [Cyanothece sp. CCY0110] Length = 208 Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 58/120 (48%), Gaps = 5/120 (4%) Query: 209 QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL 268 QGK +I+ G I ++G N GKS LFN L V++ PGTT +V + + G Sbjct: 30 QGKSSQIVSQG-TIALVGSPNVGKSLLFNVLTGA-YTTVSNYPGTTVEVSRNYITIAGKT 87 Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTK 328 + + DT G+ + E+E R L E+ DL + + K +S N+ F + T+ Sbjct: 88 ITLIDTPGMYSLIPMTEEERFSRELLFTESLDLAI---HVIDAKNLSRMLNLTFQLMETQ 144 >gi|85000959|ref|XP_955198.1| GTP-binding protein [Theileria annulata strain Ankara] gi|65303344|emb|CAI75722.1| GTP-binding protein, putative [Theileria annulata] Length = 496 Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 58/207 (28%), Positives = 96/207 (46%), Gaps = 36/207 (17%) Query: 177 DFSEEEDV--QNFSSKEVLNDILFLK--NDISSHISQGKL-GEIIRNGYKIV-ILGHSNA 230 +FSEE + + K +++L+ N+ SS I +L E R +IV I+G N Sbjct: 14 NFSEEFRLISPKYGDKHYRKQLIWLEKENEFSSDIKTAQLEHETPRIKNRIVSIVGRPNV 73 Query: 231 GKSSLFNALAKKDV----------AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 GKSS+FN + K + ++V D PGTTRD D G +I DT G + Sbjct: 74 GKSSIFNRITKLVIYLNKQKFHYGSVVNDAPGTTRDRQYSIADWNGKYFRIIDTGGYDDD 133 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYST---YTE 337 ++EG+ T ++ E D + + N KK ++++ + K++ Y + Sbjct: 134 QLYSDEEGL--TSMDYEIRDYLF---KHNKKK-----RDLEILLCVNKAESYRRGDILAQ 183 Query: 338 EYDHL-------ISSFTGEGLEELINK 357 E+ L +S+ G GL EL++K Sbjct: 184 EFWKLGLGQPYPVSALHGTGLAELLDK 210 >gi|296133911|ref|YP_003641158.1| GTP-binding protein Era [Thermincola sp. JR] gi|296032489|gb|ADG83257.1| GTP-binding protein Era [Thermincola potens JR] Length = 300 Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 48/199 (24%), Positives = 86/199 (43%), Gaps = 23/199 (11%) Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 + E ++G+ + ++G N GKS+L N + +AI+++ P TTR+ + L E Y V Sbjct: 1 MAEGFKSGF-VALIGRPNVGKSTLMNKFLGQKLAIMSEKPQTTRNKINGVLTGENYQVIF 59 Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK-------------KEISFP- 317 DT GI + + + ++ + ++ DLIL L E + +EI P Sbjct: 60 LDTPGIHKPKHKLGEYMVQVAYNALKEVDLILFLVEATEQEVGTGDRYILEQLQEIKTPV 119 Query: 318 ----KNIDFIFIGTKSDLYSTYTEEYDHL----ISSFTGEGLEELINKIKSILSNKFKKL 369 ID + + YT +S+ TG L+ L++ I L K Sbjct: 120 ILVINKIDLVQKDAILPVIDAYTARKQFAEVVPVSAITGANLQALLDNILKYLPEGPKYY 179 Query: 370 PFSIPSHKRHLYHLSQTVR 388 P I S + + +++ +R Sbjct: 180 PDDIISDQPERFVMAELIR 198 >gi|94501121|ref|ZP_01307644.1| predicted GTPase [Oceanobacter sp. RED65] gi|94426697|gb|EAT11682.1| predicted GTPase [Oceanobacter sp. RED65] Length = 482 Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 3/90 (3%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G +I ++G N GKS+L N + +D +V D PGTT D + I + + DTAG+R Sbjct: 181 GVRISVVGRPNVGKSTLVNRMLGEDRVVVYDHPGTTMDSIEIPYERNEKPYTLIDTAGVR 240 Query: 279 ETDDI---VEKEGIKRTFLEVENADLILLL 305 +I EK I + +++A++ +++ Sbjct: 241 RRKNIKEAAEKFSIVKALQAIQDANVCIVV 270 Score = 43.5 bits (101), Expect = 0.067, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 4/86 (4%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD--VLTIDLDLEGYLVKISDTAGIRE 279 I ++G N GKS+LFN L + A+V D+ G TRD + Y+V DT GI Sbjct: 5 IALVGRPNVGKSTLFNRLTRTRDALVADLAGLTRDRKFGAGKVGERDYIV--VDTGGISG 62 Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305 + ++ + +++F ++ AD++L L Sbjct: 63 MEQGLDAKMAEQSFQAMDEADIVLFL 88 >gi|262340851|ref|YP_003283706.1| putative GTP-binding protein [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272188|gb|ACY40096.1| putative GTP-binding protein [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 292 Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 4/87 (4%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 I+G N GKS+L N+L + ++I T P TTR + ++ + + SDT GI D + Sbjct: 10 IIGFPNTGKSTLMNSLVGEKLSITTYKPQTTRHRILGIINESNFQIIFSDTPGI--IDPV 67 Query: 284 VEKEGIKRTFLE--VENADLILLLKEI 308 + I ++E +E+AD+IL L EI Sbjct: 68 YPMQKIMMQYVEKALEDADIILFLTEI 94 >gi|218561451|ref|YP_002394364.1| hypothetical protein ECS88_4890 [Escherichia coli S88] gi|218368220|emb|CAR06036.1| conserved hypothetical protein with GTPase domain [Escherichia coli S88] Length = 311 Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 39/114 (34%), Positives = 60/114 (52%), Gaps = 4/114 (3%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L +S HI + L ++ + I I+G S AGKSSL NAL + +V V+D+ TR+V Sbjct: 38 LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 96 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLLKEINSK 311 L G+ + I+D G+ E+ D E E + R L DL+L L + + + Sbjct: 97 RFRLSGHGHSMIITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWLIKADDR 148 >gi|312878053|ref|ZP_07737990.1| small GTP-binding protein [Caldicellulosiruptor lactoaceticus 6A] gi|311795170|gb|EFR11562.1| small GTP-binding protein [Caldicellulosiruptor lactoaceticus 6A] Length = 403 Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 33/86 (38%), Positives = 54/86 (62%), Gaps = 4/86 (4%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTAGIRE 279 I I G NAGKSSL NA+ + +AIV+D+PGTT D + +++ G +V I DTAGI + Sbjct: 12 IAIFGKRNAGKSSLINAITNQPIAIVSDMPGTTTDPVYKSMEILPLGPVVLI-DTAGI-D 69 Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305 + + K +++T ++ D+ +L+ Sbjct: 70 DEGALGKLRVEKTLEVLDKTDIAILV 95 >gi|301330436|ref|ZP_07223060.1| conserved hypothetical protein [Escherichia coli MS 78-1] gi|300843591|gb|EFK71351.1| conserved hypothetical protein [Escherichia coli MS 78-1] Length = 309 Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L +S HI + L ++ + I I+G S AGKSSL NAL + +V V+D+ TR+V Sbjct: 36 LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 94 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305 L G+ + I+D G+ E+ D E E + R L DL+L L Sbjct: 95 RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 140 >gi|108763403|ref|YP_631947.1| GTP-binding protein Era [Myxococcus xanthus DK 1622] gi|108467283|gb|ABF92468.1| GTP-binding protein Era [Myxococcus xanthus DK 1622] Length = 314 Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 36/102 (35%), Positives = 55/102 (53%), Gaps = 5/102 (4%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTA 275 R+G+ +I G N GKS+L NAL + +AIV+ P TTR+ +L + EG + I DT Sbjct: 8 RSGFAALI-GRPNVGKSTLLNALTGEKIAIVSPKPQTTRNRILGVVTRPEGQVAFI-DTP 65 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKE--INSKKEIS 315 GI + + + ++ E DL+L L E + K E+S Sbjct: 66 GIHQAKGELNRYMVEVALQAAEEVDLVLFLIEPPASEKPEVS 107 >gi|57545656|gb|AAW51747.1| Aec64 [Escherichia coli] gi|291291738|gb|ADD91709.1| YeeP [Escherichia coli] Length = 303 Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L +S HI + L ++ + I I+G S AGKSSL NAL + +V V+D+ TR+V Sbjct: 30 LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 88 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305 L G+ + I+D G+ E+ D E E + R L DL+L L Sbjct: 89 RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 134 >gi|317152019|ref|YP_004120067.1| small GTP-binding protein [Desulfovibrio aespoeensis Aspo-2] gi|316942270|gb|ADU61321.1| small GTP-binding protein [Desulfovibrio aespoeensis Aspo-2] Length = 411 Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 29/63 (46%), Positives = 38/63 (60%), Gaps = 1/63 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280 I + G NAGKSSL NAL ++ AIV+D PGTT D + +L V DTAG+ +T Sbjct: 13 IALAGRRNAGKSSLLNALTGQETAIVSDTPGTTTDPVAKHYELLPLGPVTFYDTAGLDDT 72 Query: 281 DDI 283 D+ Sbjct: 73 GDL 75 >gi|269115218|ref|YP_003302981.1| GTP-binding Era-like protein [Mycoplasma hominis] gi|268322843|emb|CAX37578.1| GTP-binding protein era homolog [Mycoplasma hominis ATCC 23114] Length = 294 Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 24/88 (27%), Positives = 51/88 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+ N + +++I+TD P TT+D + + + Y + DT GI + + Sbjct: 7 VCLIGRPNVGKSTFLNNVLNFNLSIITDKPQTTKDNIRGIYNDKDYQIIFIDTPGIHKAE 66 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN 309 +++ + +++ +EN+D++L L N Sbjct: 67 NLLSERLNSKSYEAIENSDVVLFLTPAN 94 >gi|119492107|ref|ZP_01623560.1| ferrous iron transport protein B [Lyngbya sp. PCC 8106] gi|119453317|gb|EAW34482.1| ferrous iron transport protein B [Lyngbya sp. PCC 8106] Length = 612 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 1/85 (1%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ ++G N GKS+ F+ + A V + PG T D+L ++ + G V+ D GI + Sbjct: 19 RVALIGMPNTGKSTFFSRITGV-AAYVGNWPGVTVDLLQANVKINGETVEFVDLPGIYDL 77 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 + E E + RTFLE DL++++ Sbjct: 78 NGYSEDEKVVRTFLERYAIDLVIVV 102 >gi|47600617|emb|CAE55738.1| hypothetical protein YeeP [Escherichia coli Nissle 1917] Length = 303 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L +S HI + L ++ + I I+G S AGKSSL NAL + +V V+D+ TR+V Sbjct: 30 LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 88 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305 L G+ + I+D G+ E+ D E E + R L DL+L L Sbjct: 89 RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 134 >gi|156741277|ref|YP_001431406.1| GTP-binding protein Era [Roseiflexus castenholzii DSM 13941] gi|156232605|gb|ABU57388.1| GTP-binding protein Era [Roseiflexus castenholzii DSM 13941] Length = 449 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 45/172 (26%), Positives = 77/172 (44%), Gaps = 31/172 (18%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R+G+ + ++G N GKS+L NAL + VAIV+ P TTR + L + DT G Sbjct: 160 RSGF-VALVGRPNVGKSTLLNALLGQKVAIVSPKPQTTRTAIRGILTRPDAQIVFVDTPG 218 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNID-------------FI 323 I E + + +K+ + +AD++ ++ +I P ++D I Sbjct: 219 IHEPRNRLGAYMVKQARRAIPDADVVCMVVDITRP-----PGSLDERIAALVRKASARRI 273 Query: 324 FIGTKSDLY----STYTEEYDHL--------ISSFTGEGLEELINKIKSILS 363 + K DL S + Y L +S+ G GL+ L+++I +L Sbjct: 274 LVLNKIDLRTKRGSDNLQAYRALAPWDMEVAVSALRGHGLDALVDEIVRLLP 325 >gi|15800731|ref|NP_286745.1| putative histone [Escherichia coli O157:H7 EDL933] gi|15801136|ref|NP_287153.1| hypothetical protein Z1650 [Escherichia coli O157:H7 EDL933] gi|15830649|ref|NP_309422.1| hypothetical protein ECs1395 [Escherichia coli O157:H7 str. Sakai] gi|168747217|ref|ZP_02772239.1| putative GTPase [Escherichia coli O157:H7 str. EC4113] gi|168754492|ref|ZP_02779499.1| putative GTPase [Escherichia coli O157:H7 str. EC4401] gi|168760647|ref|ZP_02785654.1| putative GTPase [Escherichia coli O157:H7 str. EC4501] gi|168767670|ref|ZP_02792677.1| putative GTPase [Escherichia coli O157:H7 str. EC4486] gi|168773856|ref|ZP_02798863.1| putative GTPase [Escherichia coli O157:H7 str. EC4196] gi|168781186|ref|ZP_02806193.1| putative GTPase [Escherichia coli O157:H7 str. EC4076] gi|168788892|ref|ZP_02813899.1| putative GTPase [Escherichia coli O157:H7 str. EC869] gi|168799290|ref|ZP_02824297.1| putative GTPase [Escherichia coli O157:H7 str. EC508] gi|195935404|ref|ZP_03080786.1| hypothetical protein EscherichcoliO157_02937 [Escherichia coli O157:H7 str. EC4024] gi|208806517|ref|ZP_03248854.1| putative GTPase [Escherichia coli O157:H7 str. EC4206] gi|208815077|ref|ZP_03256256.1| putative GTPase [Escherichia coli O157:H7 str. EC4045] gi|208822030|ref|ZP_03262349.1| putative GTPase [Escherichia coli O157:H7 str. EC4042] gi|209400007|ref|YP_002269863.1| putative GTPase [Escherichia coli O157:H7 str. EC4115] gi|217328450|ref|ZP_03444532.1| putative GTPase [Escherichia coli O157:H7 str. TW14588] gi|254792401|ref|YP_003077238.1| hypothetical protein ECSP_1318 [Escherichia coli O157:H7 str. TW14359] gi|261227381|ref|ZP_05941662.1| hypothetical protein EscherichiacoliO157_22716 [Escherichia coli O157:H7 str. FRIK2000] gi|12514024|gb|AAG55355.1|AE005276_8 putative histone [Escherichia coli O157:H7 str. EDL933] gi|12514542|gb|AAG55765.1|AE005312_11 unknown [Escherichia coli O157:H7 str. EDL933] gi|13360855|dbj|BAB34818.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi|187770513|gb|EDU34357.1| putative GTPase [Escherichia coli O157:H7 str. EC4196] gi|188018187|gb|EDU56309.1| putative GTPase [Escherichia coli O157:H7 str. EC4113] gi|189001363|gb|EDU70349.1| putative GTPase [Escherichia coli O157:H7 str. EC4076] gi|189358140|gb|EDU76559.1| putative GTPase [Escherichia coli O157:H7 str. EC4401] gi|189363125|gb|EDU81544.1| putative GTPase [Escherichia coli O157:H7 str. EC4486] gi|189368729|gb|EDU87145.1| putative GTPase [Escherichia coli O157:H7 str. EC4501] gi|189371494|gb|EDU89910.1| putative GTPase [Escherichia coli O157:H7 str. EC869] gi|189378348|gb|EDU96764.1| putative GTPase [Escherichia coli O157:H7 str. EC508] gi|208726318|gb|EDZ75919.1| putative GTPase [Escherichia coli O157:H7 str. EC4206] gi|208731725|gb|EDZ80413.1| putative GTPase [Escherichia coli O157:H7 str. EC4045] gi|208737515|gb|EDZ85198.1| putative GTPase [Escherichia coli O157:H7 str. EC4042] gi|209161407|gb|ACI38840.1| putative GTPase [Escherichia coli O157:H7 str. EC4115] gi|217318877|gb|EEC27303.1| putative GTPase [Escherichia coli O157:H7 str. TW14588] gi|254591801|gb|ACT71162.1| hypothetical protein ECSP_1318 [Escherichia coli O157:H7 str. TW14359] gi|320189693|gb|EFW64349.1| NgrB [Escherichia coli O157:H7 str. EC1212] gi|326343339|gb|EGD67105.1| NgrB [Escherichia coli O157:H7 str. 1125] gi|326344805|gb|EGD68553.1| NgrB [Escherichia coli O157:H7 str. 1044] Length = 290 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/114 (34%), Positives = 60/114 (52%), Gaps = 4/114 (3%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L +S HI + L ++ + I I+G S AGKSSL NAL + +V V+D+ TR+V Sbjct: 17 LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 75 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLLKEINSK 311 L G+ + I+D G+ E+ D E E + R L DL+L L + + + Sbjct: 76 RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWLIKADDR 127 >gi|301023688|ref|ZP_07187440.1| conserved hypothetical protein [Escherichia coli MS 196-1] gi|299880731|gb|EFI88942.1| conserved hypothetical protein [Escherichia coli MS 196-1] Length = 138 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L +S HI + L ++ + I I+G S AGKSSL NAL + +V V+D+ TR+V Sbjct: 17 LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 75 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305 L G+ + I+D G+ E+ D E E + R L DL+L L Sbjct: 76 RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 121 >gi|283779176|ref|YP_003369931.1| GTP-binding protein HSR1-like protein [Pirellula staleyi DSM 6068] gi|283437629|gb|ADB16071.1| GTP-binding protein HSR1-related protein [Pirellula staleyi DSM 6068] Length = 451 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 68/149 (45%), Gaps = 19/149 (12%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL--------VKIS 272 +IV+ G + GKS+L NAL +DVA V G T++V + D GY V + Sbjct: 57 EIVVFGEISVGKSALINALIGRDVAAVDVRGGWTKEVWQVAWDGAGYCLPGLGVSQVVLV 116 Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLL--KEINSKKEISFPKNIDF----IFIG 326 DT GI E E R + ADL+L + + N + S + F I + Sbjct: 117 DTPGINEVGGSTRGE---RAREAAQRADLLLFVTDSDFNEVEHDSLSSLVTFHKPIIVVL 173 Query: 327 TKSDLYSTYTEEYDHLISSFTGEGLEELI 355 +KSDLYS ++ L+ T E L L+ Sbjct: 174 SKSDLYS--PDQKARLLHVLTQERLVGLV 200 >gi|24375414|ref|NP_719457.1| GTP-binding protein [Shewanella oneidensis MR-1] gi|24350252|gb|AAN56901.1|AE015824_12 GTP-binding protein [Shewanella oneidensis MR-1] Length = 394 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 37/59 (62%), Gaps = 1/59 (1%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGI 277 Y I ++G N+GKSSL N LA + ++IV+DI GTT D + +L+ V DTAGI Sbjct: 3 YHIALVGRRNSGKSSLLNMLAGQQISIVSDIKGTTTDAVAKAYELQPLGPVTFYDTAGI 61 >gi|320663345|gb|EFX30647.1| hypothetical protein ECO5905_15638 [Escherichia coli O55:H7 str. USDA 5905] Length = 290 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/83 (39%), Positives = 47/83 (56%), Gaps = 3/83 (3%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 I+G S AGKSSL NAL + +V V+D+ TR+V L+ G+ + I+D G+ E+ D Sbjct: 41 IMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQRFRLNGHGHSMVITDLPGVGESRDR 100 Query: 284 -VEKEGIKRTFLEVENADLILLL 305 E E + R L DL+L L Sbjct: 101 DTEYEALYRDIL--PELDLVLWL 121 >gi|218707941|ref|YP_002415460.1| hypothetical protein ECUMN_4880 [Escherichia coli UMN026] gi|331650750|ref|ZP_08351778.1| conserved hypothetical protein [Escherichia coli M718] gi|218435038|emb|CAR15991.1| conserved hypothetical protein with GTPase domain [Escherichia coli UMN026] gi|331051204|gb|EGI23253.1| conserved hypothetical protein [Escherichia coli M718] Length = 303 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L +S HI + L ++ + I I+G S AGKSSL NAL + +V V+D+ TR+V Sbjct: 30 LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 88 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305 L G+ + I+D G+ E+ D E E + R L DL+L L Sbjct: 89 RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 134 >gi|225873315|ref|YP_002754774.1| GTP-binding protein Era [Acidobacterium capsulatum ATCC 51196] gi|225791445|gb|ACO31535.1| GTP-binding protein Era [Acidobacterium capsulatum ATCC 51196] Length = 346 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 29/100 (29%), Positives = 54/100 (54%), Gaps = 11/100 (11%) Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS--- 272 +R+G+ + I+G NAGKS+L NALA + VAIVT P TTR+ + +++ K Sbjct: 1 MRSGF-VSIVGRPNAGKSTLLNALAGEKVAIVTSKPQTTRNRIHGIVEVPAQNTKAGKRP 59 Query: 273 -------DTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 DT G+ + + +++ ++ +E D+++ + Sbjct: 60 AAQIVFVDTPGVHKPGNTLDRRMLQEVHAALETRDIVIWM 99 >gi|170683241|ref|YP_001744300.1| putative GTPase [Escherichia coli SMS-3-5] gi|170520959|gb|ACB19137.1| putative GTPase [Escherichia coli SMS-3-5] Length = 290 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L +S HI + L ++ + I I+G S AGKSSL NAL + +V V+D+ TR+V Sbjct: 17 LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 75 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305 L G+ + I+D G+ E+ D E E + R L DL+L L Sbjct: 76 RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 121 >gi|318042122|ref|ZP_07974078.1| GTP-binding protein Era-like protein [Synechococcus sp. CB0101] Length = 330 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 42/176 (23%), Positives = 77/176 (43%), Gaps = 24/176 (13%) Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269 G+ E R+G+ + ++G N GKS+L N L + VAI + I TTR+ L L + Sbjct: 31 GQSPEGYRSGF-VALVGRPNVGKSTLLNQLVGEKVAITSPIAQTTRNRLRAILTTPEAQL 89 Query: 270 KISDTAGIRETDDIVEKEGIKRTFLEVENADLIL------------------LLKEINSK 311 + DT GI + ++ + ++ + DL+L LL + Sbjct: 90 VLVDTPGIHKPHHLLGERLVQTARGAIGEVDLVLLLVDGSQPAGRGDGFIVELLSHARAP 149 Query: 312 KEISFPKNIDFIFIGTKSDLYSTYTEEYD----HLISSFTGEGLEELINKIKSILS 363 ++ K+ D + +L ++Y E H +S+ G+G E L++ + + L Sbjct: 150 VHVALNKH-DLVDPAQAIELEASYRELVPDWPLHPVSALNGDGTEALVSALSAALP 204 >gi|326331287|ref|ZP_08197579.1| ribosome-associated GTPase EngA [Nocardioidaceae bacterium Broad-1] gi|325950920|gb|EGD42968.1| ribosome-associated GTPase EngA [Nocardioidaceae bacterium Broad-1] Length = 461 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 39/59 (66%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 +I ++G N GKSSL N LAK++ A+V ++ GTT D + ++L G + DTAGIR+ Sbjct: 202 RIALVGKPNVGKSSLLNKLAKEERAVVDNVAGTTVDPVDELIELGGREWRFIDTAGIRK 260 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 32/55 (58%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 + ++G N GKS+L N + + A+V D+PG TRD ++ D D G + DT G Sbjct: 28 VAVVGRPNVGKSTLVNRIIGRREAVVQDVPGVTRDRVSYDADWNGKAFTLVDTGG 82 >gi|317129116|ref|YP_004095398.1| GTP-binding proten HflX [Bacillus cellulosilyticus DSM 2522] gi|315474064|gb|ADU30667.1| GTP-binding proten HflX [Bacillus cellulosilyticus DSM 2522] Length = 420 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 57/217 (26%), Positives = 95/217 (43%), Gaps = 32/217 (14%) Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252 + DI I SH + + ++I ++G++NAGKS+L + L++ D+ V D Sbjct: 169 MTDIRMQLEQIVSHRERYRARRKKNQAFQISLVGYTNAGKSTLLHRLSEADI-YVEDQLF 227 Query: 253 TTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL-------- 303 T D T + L G V ++DT G + + T EV+ ADLIL Sbjct: 228 ATLDPTTKKIKLPSGMEVLLTDTVGFIQQLPTTLIAAFRSTLEEVKEADLILHVVDAANP 287 Query: 304 -----------LLKEINSKKEISFPKNIDFIFIGTKSDL----YSTYTEEYDHLISSFTG 348 LL+E+ ++K I + + K DL + +YT+ LISS Sbjct: 288 DYPNHEKTVYKLLEELEAEK-------IPVLTVYNKRDLLHGDFFSYTKSASILISSKEK 340 Query: 349 EGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQ 385 L++L KI+S++ F F + +++ H Q Sbjct: 341 ADLDKLQEKIESVMEEIFSPYIFHVDANEGKWLHRLQ 377 >gi|331673511|ref|ZP_08374278.1| conserved hypothetical protein [Escherichia coli TA280] gi|331069322|gb|EGI40710.1| conserved hypothetical protein [Escherichia coli TA280] Length = 297 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L +S HI + L ++ + I I+G S AGKSSL NAL + +V V+D+ TR+V Sbjct: 24 LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQ 82 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305 L G+ + I+D G+ E+ D E E + R L DL+L L Sbjct: 83 RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 128 >gi|193063029|ref|ZP_03044121.1| putative GTPase [Escherichia coli E22] gi|260845663|ref|YP_003223441.1| hypothetical protein ECO103_3582 [Escherichia coli O103:H2 str. 12009] gi|260846939|ref|YP_003224717.1| hypothetical protein ECO103_4896 [Escherichia coli O103:H2 str. 12009] gi|192931288|gb|EDV83890.1| putative GTPase [Escherichia coli E22] gi|257760810|dbj|BAI32307.1| hypothetical protein ECO103_3582 [Escherichia coli O103:H2 str. 12009] gi|257762086|dbj|BAI33583.1| hypothetical protein ECO103_4896 [Escherichia coli O103:H2 str. 12009] gi|320667285|gb|EFX34248.1| hypothetical protein ECOSU61_09164 [Escherichia coli O157:H7 str. LSU-61] Length = 290 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L +S HI + L ++ + I I+G S AGKSSL NAL + +V V+D+ TR+V Sbjct: 17 LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 75 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305 L G+ + I+D G+ E+ D E E + R L DL+L L Sbjct: 76 RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PKLDLVLWL 121 >gi|193069461|ref|ZP_03050415.1| putative GTPase [Escherichia coli E110019] gi|260854503|ref|YP_003228394.1| hypothetical protein ECO26_1352 [Escherichia coli O26:H11 str. 11368] gi|192957209|gb|EDV87658.1| putative GTPase [Escherichia coli E110019] gi|257753152|dbj|BAI24654.1| hypothetical protein ECO26_1352 [Escherichia coli O26:H11 str. 11368] gi|323156819|gb|EFZ42953.1| hypothetical protein ECEPECA14_1269 [Escherichia coli EPECa14] Length = 290 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/114 (34%), Positives = 60/114 (52%), Gaps = 4/114 (3%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L +S HI + L ++ + I I+G S AGKSSL NAL + +V V+D+ TR+V Sbjct: 17 LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 75 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLLKEINSK 311 L G+ + I+D G+ E+ D E E + R L DL+L L + + + Sbjct: 76 RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWLIKADDR 127 >gi|333006081|gb|EGK25595.1| hypothetical protein SFVA6_1522 [Shigella flexneri VA-6] Length = 290 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L +S HI + L ++ + I I+G S AGKSSL NAL + +V V+D+ TR+V Sbjct: 17 LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 75 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305 L G+ + I+D G+ E+ D E E + R L DL+L L Sbjct: 76 RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 121 >gi|291283231|ref|YP_003500049.1| hypothetical protein G2583_2513 [Escherichia coli O55:H7 str. CB9615] gi|291284317|ref|YP_003501135.1| hypothetical protein G2583_3660 [Escherichia coli O55:H7 str. CB9615] gi|290763104|gb|ADD57065.1| hypothetical protein G2583_2513 [Escherichia coli O55:H7 str. CB9615] gi|290764190|gb|ADD58151.1| hypothetical protein G2583_3660 [Escherichia coli O55:H7 str. CB9615] gi|320641438|gb|EFX10878.1| hypothetical protein ECO5101_07272 [Escherichia coli O157:H7 str. G5101] gi|320646799|gb|EFX15674.1| hypothetical protein ECO9389_10395 [Escherichia coli O157:H- str. 493-89] Length = 290 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/83 (39%), Positives = 47/83 (56%), Gaps = 3/83 (3%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 I+G S AGKSSL NAL + +V V+D+ TR+V L+ G+ + I+D G+ E+ D Sbjct: 41 IMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQRFRLNGHGHSMVITDLPGVGESRDR 100 Query: 284 -VEKEGIKRTFLEVENADLILLL 305 E E + R L DL+L L Sbjct: 101 DTEYEALYRDIL--PELDLVLWL 121 >gi|308176886|ref|YP_003916292.1| GTPase [Arthrobacter arilaitensis Re117] gi|307744349|emb|CBT75321.1| putative GTPase [Arthrobacter arilaitensis Re117] Length = 553 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 49/179 (27%), Positives = 78/179 (43%), Gaps = 27/179 (15%) Query: 222 IVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 + I G++NAGKSSL N L V A+ + T R T D G ++DT G Sbjct: 334 VAIAGYTNAGKSSLLNRLTNAGVLVENALFATLDPTVRQSATED----GLTYTLADTVGF 389 Query: 278 RETDDIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFPK---------NIDFIFI 325 E + T E+ ++DLIL + + + +I + NI I + Sbjct: 390 VSNLPTQLVEAFRSTLEEIADSDLILHVVDGSHPDPEGQIQAVRTVLGEVDALNIPEIIV 449 Query: 326 GTKSDLYSTYT-------EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377 K+D+ + E ++S+ TGEG+EEL+ KI S + +L IP ++ Sbjct: 450 VNKADVADPFVIERIRNRESNTAVVSAHTGEGIEELLEKISSSIPRPGIQLEVLIPYNR 508 >gi|30064306|ref|NP_838477.1| hypothetical protein S3193 [Shigella flexneri 2a str. 2457T] gi|30042563|gb|AAP18287.1| hypothetical protein S3193 [Shigella flexneri 2a str. 2457T] gi|281602339|gb|ADA75323.1| putative GTPase [Shigella flexneri 2002017] gi|284924234|emb|CBG37334.1| putative ATP/GTP-binding protein [Escherichia coli 042] gi|313648057|gb|EFS12503.1| uncharacterized protein ykfA [Shigella flexneri 2a str. 2457T] gi|315614830|gb|EFU95468.1| uncharacterized protein ykfA [Escherichia coli 3431] gi|332749827|gb|EGJ80240.1| hypothetical protein SF274771_5129 [Shigella flexneri 2747-71] gi|332765421|gb|EGJ95639.1| hypothetical protein SF293071_3503 [Shigella flexneri 2930-71] Length = 290 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L +S HI + L ++ + I I+G S AGKSSL NAL + +V V+D+ TR+V Sbjct: 17 LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQ 75 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305 L G+ + I+D G+ E+ D E E + R L DL+L L Sbjct: 76 RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 121 >gi|27379603|ref|NP_771132.1| GTP-binding protein HFLX [Bradyrhizobium japonicum USDA 110] gi|27352755|dbj|BAC49757.1| GTP-binding protein HFLX [Bradyrhizobium japonicum USDA 110] Length = 437 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 53/187 (28%), Positives = 81/187 (43%), Gaps = 31/187 (16%) Query: 217 RNGYKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDT 274 R Y++V L G++NAGKS+LFN L + DV D+ T D L L G +SDT Sbjct: 199 RVPYRVVALVGYTNAGKSTLFNRLTRADVQ-AADMLFATLDPTLRALTLPHGGKAMLSDT 257 Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF---------- 324 G + T EV AD+IL +++I+ + + ++D + Sbjct: 258 VGFISNLPTQLIAAFRATLEEVLEADVILHVRDISHEDAEAQQSDVDAVLRQLGINPDDS 317 Query: 325 -----IGTKSDLYSTYTEE----------YDH---LISSFTGEGLEELINKIKSILSNKF 366 + K D Y E DH L+S+ +GEG++ L+ I+ L+ K Sbjct: 318 GRIIEVWNKIDRYDAEQREELLNIAARRPEDHPAMLVSAVSGEGVDALLAAIEERLAAKR 377 Query: 367 KKLPFSI 373 L SI Sbjct: 378 TTLDLSI 384 >gi|89095338|ref|ZP_01168256.1| GTP-binding protein EngA [Oceanospirillum sp. MED92] gi|89080413|gb|EAR59667.1| GTP-binding protein EngA [Oceanospirillum sp. MED92] Length = 479 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 6/88 (6%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL----EGYLVKISDTAGI 277 I ++G N GKS+LFN L + A+V D+PG TRD + L + Y+V DT GI Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRKYGEGRLANEEQDYIV--VDTGGI 62 Query: 278 RETDDIVEKEGIKRTFLEVENADLILLL 305 + ++ E K++ V+ AD++L + Sbjct: 63 TGDEQGIDYEMAKQSLQAVDEADVVLFI 90 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI ++G N GKS+L N + +D +V D GTTRD + I + + DTAG+R Sbjct: 183 KIAVVGRPNVGKSTLVNRMLGEDRVVVFDKAGTTRDSVYIPYVRDDKNYTLIDTAGVRRR 242 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 +I EK I +T V +A +++ + Sbjct: 243 KNITEAAEKFSIVKTLQAVNDAHVVVFV 270 >gi|307136928|ref|ZP_07496284.1| hypothetical protein EcolH7_02203 [Escherichia coli H736] gi|323938805|gb|EGB35051.1| hypothetical protein ERCG_00058 [Escherichia coli E1520] Length = 290 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L +S HI + L ++ + I I+G S AGKSSL NAL + +V V+D+ TR+V Sbjct: 17 LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQ 75 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305 L G+ + I+D G+ E+ D E E + R L DL+L L Sbjct: 76 RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 121 >gi|153809863|ref|ZP_01962531.1| hypothetical protein RUMOBE_00244 [Ruminococcus obeum ATCC 29174] gi|149834041|gb|EDM89121.1| hypothetical protein RUMOBE_00244 [Ruminococcus obeum ATCC 29174] Length = 408 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 48/168 (28%), Positives = 83/168 (49%), Gaps = 20/168 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGIRE 279 I G NAGKSS+ NA+ +D+AIV+ + GTT D + T++L G ++ I DT GI + Sbjct: 14 ISFFGKRNAGKSSVINAVTGQDLAIVSSVMGTTTDPVYKTMELLPLGPVMVI-DTPGIDD 72 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKK---EISF-----PKNIDFIFIGTKSDL 331 ++ +++++ + D+ +L+ + + K E+ K I ++ + K DL Sbjct: 73 EGELGALR-VRKSYQVLNKTDIAILVIDSTAGKGEEELELIHRFHKKGIPYLIVYNKIDL 131 Query: 332 YST--------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371 ST + L+S+ G ++EL KI S+ S K P Sbjct: 132 LSTEKIKDLAMSVRAGEVLVSASDGMNIQELKEKIASLKSEDTHKYPL 179 >gi|118579918|ref|YP_901168.1| small GTP-binding protein [Pelobacter propionicus DSM 2379] gi|118502628|gb|ABK99110.1| iron-only hydrogenase maturation protein HydF [Pelobacter propionicus DSM 2379] Length = 412 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 49/170 (28%), Positives = 75/170 (44%), Gaps = 18/170 (10%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276 N I + G N GKSSL N+L ++D A+V+D+ GTT D + ++L V DTAG Sbjct: 8 NRLHIGLFGRRNVGKSSLLNSLTRQDAALVSDVAGTTTDPIEKPMELLPLGPVLFIDTAG 67 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLK---EINSKKEISFP----KNIDFIFIGTKS 329 I +T + E ++RT ++ D+ LL+ E +E+ + I I + KS Sbjct: 68 IDDTGALGELR-VQRTRQVLDRVDVGLLVSIAGEWGEFEEVILAELGGRGIPVIVVFNKS 126 Query: 330 DLYSTYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLP 370 D + L S+ GEGL L + + F P Sbjct: 127 DCCAVDDGRLVALHERGALCVVTSAPRGEGLPALREALIQCAPDGFITPP 176 >gi|218246171|ref|YP_002371542.1| small GTP-binding protein [Cyanothece sp. PCC 8801] gi|218166649|gb|ACK65386.1| small GTP-binding protein [Cyanothece sp. PCC 8801] Length = 531 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 67/242 (27%), Positives = 112/242 (46%), Gaps = 20/242 (8%) Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 VQ K +L +I + +++G+L K+V+ G +AGK+SL NAL + Sbjct: 103 VQQIQDKVTQKALLNRSQEIEASLTRGEL--------KVVVFGTGSAGKTSLINALIGEM 154 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYL--VKISDTAGIRETD-DIVEKEGIKRTFLEVENAD 300 V V GTT+ T L L G + I+DT GI E + ++E + R AD Sbjct: 155 VGNVEATMGTTQIGETYRLKLRGVSQEILITDTPGILEAGVEGTQREKLARQL--ATEAD 212 Query: 301 LILLLKEINSKKEISFPKNIDFIFIGTKSDL----YSTYTEEYDHLISSFTGEGLEELIN 356 L+L + + + ++ P I IG +S L YTE+ LI E +++LI Sbjct: 213 LLLFVVDNDLRQSEYDPLQI-LAKIGKRSLLIFNKIDLYTEDEITLIKQQLQERVKDLIG 271 Query: 357 KIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSL 416 + IL + PF + + K + + ++ ++ + G D+IA+N+ L S L Sbjct: 272 ESDIILIAANPQ-PFEVETGK-MIKAEPDIIPLIKRLAVVLRAEGEDLIADNILLQSQRL 329 Query: 417 GK 418 G+ Sbjct: 330 GE 331 >gi|309704622|emb|CBJ03972.1| putative MMR_HS1 domain protein [Escherichia coli ETEC H10407] Length = 290 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/114 (34%), Positives = 60/114 (52%), Gaps = 4/114 (3%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L +S HI + L ++ + I I+G S AGKSSL NAL + +V V+D+ TR+V Sbjct: 17 LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQ 75 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLLKEINSK 311 L G+ + I+D G+ E+ D E E + R L DL+L L + + + Sbjct: 76 RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWLIKADDR 127 >gi|331675665|ref|ZP_08376410.1| conserved hypothetical protein [Escherichia coli TA280] gi|331067159|gb|EGI38569.1| conserved hypothetical protein [Escherichia coli TA280] Length = 276 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L +S HI + L ++ + I I+G S AGKSSL NAL + +V V+D+ TR+V Sbjct: 3 LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQ 61 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305 L G+ + I+D G+ E+ D E E + R L DL+L L Sbjct: 62 RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 107 >gi|294628589|ref|ZP_06707149.1| ribosome-associated GTPase EngA [Streptomyces sp. e14] gi|292831922|gb|EFF90271.1| ribosome-associated GTPase EngA [Streptomyces sp. e14] Length = 494 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 ++ ++G N GKSSL N +A ++ +V ++ GTTRD + ++L G K DTAGIR+ Sbjct: 232 RVALIGRPNVGKSSLLNKVAGEERVVVDELAGTTRDPVDELIELGGKTWKFVDTAGIRK 290 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 32/55 (58%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 + ++G N GKS+L N + + A+V D PG TRD +T + + G K+ DT G Sbjct: 57 LAVVGRPNVGKSTLVNRIIGRREAVVEDKPGVTRDRVTYEAEWAGRRFKVVDTGG 111 >gi|323968922|gb|EGB64247.1| small GTP-binding protein containing protein [Escherichia coli TA007] Length = 243 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/85 (40%), Positives = 46/85 (54%), Gaps = 3/85 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G S AGKSSL NAL + +V V+D+ TR+V L G + I+D G+ E+ Sbjct: 39 IGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVRRFRLSGHGCSMVITDLPGVGESR 98 Query: 282 DI-VEKEGIKRTFLEVENADLILLL 305 D E E + R L DL+L L Sbjct: 99 DRDAEYEALYRDIL--PELDLVLWL 121 >gi|284047992|ref|YP_003398331.1| GTP-binding protein Era [Acidaminococcus fermentans DSM 20731] gi|283952213|gb|ADB47016.1| GTP-binding protein Era [Acidaminococcus fermentans DSM 20731] Length = 308 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/91 (28%), Positives = 50/91 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G NAGKS+L N L + VAI++D P TTR+ + L E + DT G+ + Sbjct: 14 VAVVGRPNAGKSTLVNHLVGEKVAIISDRPQTTRNRILSILSTEEAQMVFLDTPGLHKPQ 73 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK 312 D + + ++ ++ D++L + + + K+ Sbjct: 74 DKLGEHMVQAALNAIKEVDVVLFVVDASEKR 104 >gi|223994975|ref|XP_002287171.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220976287|gb|EED94614.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 460 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 10/94 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-----DLEGY--LVKISDT 274 + I+G N GKSSL N + + AIV+D+ GTTRD + + D EG + + DT Sbjct: 184 VAIIGRPNVGKSSLINTIFGSNRAIVSDVAGTTRDSIDAIMERPSSDPEGLPTIYRFVDT 243 Query: 275 AGIRETDDI---VEKEGIKRTFLEVENADLILLL 305 AGIR I E + R + AD++LL+ Sbjct: 244 AGIRRKGKIEFGPEFFMVNRALRAIRRADVVLLV 277 Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 4/88 (4%) Query: 222 IVILGHSNAGKSSLFNALA--KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI-- 277 I ++G N GKS+L N LA + AIV D G TRD + + G ++ DT G+ Sbjct: 3 IAVVGRPNVGKSALVNRLAGTQSGGAIVADEEGITRDRTYRNAEFLGEAFQLVDTGGLVF 62 Query: 278 RETDDIVEKEGIKRTFLEVENADLILLL 305 + D + KE ++ + +E + ++L+ Sbjct: 63 DDNDALFAKEIREQAMIAIEESAGVILV 90 >gi|317152308|ref|YP_004120356.1| small GTP-binding protein [Desulfovibrio aespoeensis Aspo-2] gi|316942559|gb|ADU61610.1| small GTP-binding protein [Desulfovibrio aespoeensis Aspo-2] Length = 411 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 29/63 (46%), Positives = 38/63 (60%), Gaps = 1/63 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280 I + G NAGKSSL NAL ++ AIV+D PGTT D + +L V DTAG+ +T Sbjct: 13 IALAGRRNAGKSSLLNALTGQETAIVSDTPGTTTDPVAKHYELLPLGPVTFYDTAGLDDT 72 Query: 281 DDI 283 D+ Sbjct: 73 GDL 75 >gi|47154997|emb|CAE85196.1| YeeP protein [Escherichia coli] Length = 353 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L +S HI + L ++ + I I+G S AGKSSL NAL + +V V+D+ TR+V Sbjct: 80 LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 138 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305 L G+ + I+D G+ E+ D E E + R L DL+L L Sbjct: 139 RFRLSGHGHNMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 184 >gi|52786163|ref|YP_091992.1| GTP-binding protein EngA [Bacillus licheniformis ATCC 14580] gi|163119516|ref|YP_079584.2| GTP-binding protein EngA [Bacillus licheniformis ATCC 14580] gi|319645250|ref|ZP_07999483.1| GTP-binding protein engA [Bacillus sp. BT1B_CT2] gi|81825274|sp|Q65I15|DER_BACLD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|52348665|gb|AAU41299.1| YphC [Bacillus licheniformis ATCC 14580] gi|145903023|gb|AAU23946.2| GTP-binding protein essential for cell growth [Bacillus licheniformis ATCC 14580] gi|317393059|gb|EFV73853.1| GTP-binding protein engA [Bacillus sp. BT1B_CT2] Length = 436 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 46/84 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN +A + ++IV D PG TRD + + + + DT GI D Sbjct: 6 VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNHDFNLIDTGGIEVGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + + + +E AD+I+ + Sbjct: 66 EPFLAQIRHQAEIAMEEADVIIFM 89 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G N GKSSL NA+ ++ IV++I GTTRD + I DTAG+R+ Sbjct: 177 QFCLIGRPNVGKSSLVNAMIGEERVIVSNIAGTTRDAIDTRFTYNQRDFVIVDTAGMRKK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + EK + R ++ ++++ ++ Sbjct: 237 GKVYEATEKYSVLRALKAIDRSEVVCVV 264 >gi|193061960|ref|ZP_03043056.1| putative GTPase [Escherichia coli E22] gi|194426328|ref|ZP_03058883.1| putative GTPase [Escherichia coli B171] gi|19908362|gb|AAL99256.1| unknown [Escherichia coli] gi|192932180|gb|EDV84778.1| putative GTPase [Escherichia coli E22] gi|194415636|gb|EDX31903.1| putative GTPase [Escherichia coli B171] gi|195183165|dbj|BAG66710.1| putative small GTP-binding protein [Escherichia coli O111:H-] gi|323162623|gb|EFZ48469.1| hypothetical protein ECE128010_1182 [Escherichia coli E128010] Length = 290 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L +S HI + L ++ + I I+G S AGKSSL NAL + +V V+D+ TR+V Sbjct: 17 LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 75 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305 L G+ + I+D G+ E+ D E E + R L DL+L L Sbjct: 76 RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 121 >gi|333005525|gb|EGK25043.1| hypothetical protein SFK218_1677 [Shigella flexneri K-218] Length = 290 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L +S HI + L ++ + I I+G S AGKSSL NAL + +V V+D+ TR+V Sbjct: 17 LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQ 75 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305 L G+ + I+D G+ E+ D E E + R L DL+L L Sbjct: 76 RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 121 >gi|312794014|ref|YP_004026937.1| small gtp-binding protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181154|gb|ADQ41324.1| small GTP-binding protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 403 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/86 (38%), Positives = 54/86 (62%), Gaps = 4/86 (4%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTAGIRE 279 I I G NAGKSSL NA+ + +AIV+D+PGTT D + +++ G +V I DTAGI + Sbjct: 12 IAIFGKRNAGKSSLINAITNQPIAIVSDMPGTTTDPVYKAMEILPLGPVVLI-DTAGI-D 69 Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305 + + K +++T ++ D+ +L+ Sbjct: 70 DEGALGKLRVEKTLEVLDKTDIAILV 95 >gi|225630483|ref|YP_002727274.1| GTP-binding protein Era [Wolbachia sp. wRi] gi|225592464|gb|ACN95483.1| GTP-binding protein Era [Wolbachia sp. wRi] Length = 294 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 74/165 (44%), Gaps = 23/165 (13%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I G NAGKS+L N++ K +AIVT TTR + V +D+ GI + Sbjct: 9 VTIAGLPNAGKSTLINSIIGKKIAIVTPKVQTTRTQIRGVATCNNTQVVFTDSPGIFSAE 68 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI-NSKKEISFPKNI---------DFIFIGTKSDL 331 +EK +K + V+++D+ LLL ++ N K I K I I + K+DL Sbjct: 69 TKLEKALVKSAWSAVKDSDITLLLVDVSNYLKNIERIKTIFMRLQRTKGRCILVINKTDL 128 Query: 332 YST-------------YTEEYDHLISSFTGEGLEELINKIKSILS 363 Y E +IS+ +GL +L+N + + S Sbjct: 129 VKRPELKMAHEHLNLLYKFEKVFMISALKNDGLSDLMNYLSEVAS 173 >gi|77919547|ref|YP_357362.1| ferrous iron transport protein B [Pelobacter carbinolicus DSM 2380] gi|77545630|gb|ABA89192.1| ferrous iron transport protein B [Pelobacter carbinolicus DSM 2380] Length = 654 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 1/83 (1%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KIV++G+ N GKS LFNAL +V++ PGT+ +V ++EG ++ DT G+ Sbjct: 13 KIVLVGNPNVGKSVLFNALTGA-YTVVSNYPGTSVEVSRGCCEIEGVSYEVLDTPGMYSL 71 Query: 281 DDIVEKEGIKRTFLEVENADLIL 303 I E+E + R L E+A ++ Sbjct: 72 LPITEEERVAREILLKESAHTVV 94 >gi|46580178|ref|YP_010986.1| GTP-binding protein [Desulfovibrio vulgaris str. Hildenborough] gi|46449595|gb|AAS96245.1| GTP-binding protein [Desulfovibrio vulgaris str. Hildenborough] gi|311233831|gb|ADP86685.1| small GTP-binding protein [Desulfovibrio vulgaris RCH1] Length = 410 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 37/88 (42%), Positives = 50/88 (56%), Gaps = 4/88 (4%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGIRE 279 I I G N GKSSL NAL ++ V+IV+ PGTT D + T+++ G +V I DTAGI + Sbjct: 12 IGIYGRRNVGKSSLLNALTRQTVSIVSATPGTTTDPVEKTMEMAPIGPVVFI-DTAGIDD 70 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKE 307 T D+ RT + DL L+ E Sbjct: 71 TGDLGLMRS-DRTRQMFDRTDLALVASE 97 >gi|329903455|ref|ZP_08273477.1| Ferrous iron transport protein B [Oxalobacteraceae bacterium IMCC9480] gi|327548382|gb|EGF33064.1| Ferrous iron transport protein B [Oxalobacteraceae bacterium IMCC9480] Length = 595 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 3/92 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I +LG NAGKS+ FN L A V + PG T D+L + + +V+ D GI + Sbjct: 3 RIALLGMPNAGKSTFFNRLTGAS-ARVGNWPGVTVDLLGAKVLIGASMVEAIDLPGIYDL 61 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKK 312 E E + R FL + DL L++ IN+ + Sbjct: 62 QGFSEDEEVVRRFLSLNPVDLALVV--INTAQ 91 >gi|260858460|ref|YP_003232351.1| hypothetical protein ECO26_5485 [Escherichia coli O26:H11 str. 11368] gi|257757109|dbj|BAI28611.1| hypothetical protein ECO26_5485 [Escherichia coli O26:H11 str. 11368] Length = 290 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L +S HI + L ++ + I I+G S AGKSSL NAL + +V V+D+ TR+V Sbjct: 17 LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 75 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305 L G+ + I+D G+ E+ D E E + R L DL+L L Sbjct: 76 RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 121 >gi|304319918|ref|YP_003853561.1| GTP-binding protein EngA [Parvularcula bermudensis HTCC2503] gi|303298821|gb|ADM08420.1| GTP-binding protein EngA [Parvularcula bermudensis HTCC2503] Length = 459 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 36/60 (60%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKS+LFN LA + +A+V D PG TRD I+ + + DTAG+ E Sbjct: 4 RLAIIGRPNVGKSTLFNRLAGRKLALVHDEPGVTRDRREIEATFGDLDLTLIDTAGLEEA 63 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 7/96 (7%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL----DLEGYLVKIS 272 R ++ I+G NAGKS+L N L +D + G TRD ++ + D + VK+ Sbjct: 184 RKPLRLAIVGRPNAGKSTLVNQLLGEDRVLTGPEAGITRDTISAEWRYVADDRDWPVKLF 243 Query: 273 DTAGIR---ETDDIVEKEGIKRTFLEVENADLILLL 305 DTAG+R + D +EK + T + A+++ LL Sbjct: 244 DTAGLRRRAKVQDKLEKLSVGDTLRAIRFAEVVALL 279 >gi|157156541|ref|YP_001464348.1| putative GTPase [Escherichia coli E24377A] gi|157078571|gb|ABV18279.1| putative GTPase [Escherichia coli E24377A] Length = 290 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L +S HI + L ++ + I I+G S AGKSSL NAL + +V V+D+ TR+V Sbjct: 17 LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 75 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305 L G+ + I+D G+ E+ D E E + R L DL+L L Sbjct: 76 RFRLSGHGHSMIITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 121 >gi|194432361|ref|ZP_03064648.1| putative GTPase [Shigella dysenteriae 1012] gi|297521934|ref|ZP_06940320.1| hypothetical protein EcolOP_30123 [Escherichia coli OP50] gi|15808742|gb|AAL08471.1| unknown [Shigella flexneri 2a] gi|194419248|gb|EDX35330.1| putative GTPase [Shigella dysenteriae 1012] gi|333009623|gb|EGK29075.1| hypothetical protein SFK272_1251 [Shigella flexneri K-272] gi|333020579|gb|EGK39839.1| hypothetical protein SFK227_0562 [Shigella flexneri K-227] Length = 290 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L +S HI + L ++ + I I+G S AGKSSL NAL + +V V+D+ TR+V Sbjct: 17 LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQ 75 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305 L G+ + I+D G+ E+ D E E + R L DL+L L Sbjct: 76 RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 121 >gi|323938863|gb|EGB35085.1| hypothetical protein ERDG_04520 [Escherichia coli E482] Length = 290 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L +S HI + L ++ + I I+G S AGKSSL NAL + +V V+D+ TR+V Sbjct: 17 LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQ 75 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305 L G+ + I+D G+ E+ D E E + R L DL+L L Sbjct: 76 RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 121 >gi|70946047|ref|XP_742778.1| hypothetical protein [Plasmodium chabaudi chabaudi] gi|56521948|emb|CAH81720.1| hypothetical protein PC000779.04.0 [Plasmodium chabaudi chabaudi] Length = 139 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/94 (35%), Positives = 53/94 (56%), Gaps = 3/94 (3%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKK--DVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 +IIRN I I+G N GKS++FN L +K + +IV D P +TRD + +GY ++ Sbjct: 21 KIIRNLPLISIIGRPNVGKSTIFNRLTRKFQEGSIVLDKP-STRDKFYGKSEWDGYRFEV 79 Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 DT G+ D+ KE + L +E + ++L + Sbjct: 80 VDTGGLLFEDENFSKEIRDQILLALEESSVVLFV 113 >gi|157161492|ref|YP_001458810.1| putative GTPase [Escherichia coli HS] gi|157067172|gb|ABV06427.1| putative GTPase [Escherichia coli HS] Length = 290 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L +S HI + L ++ + I I+G S AGKSSL NAL + +V V+D+ TR+V Sbjct: 17 LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQ 75 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305 L G+ + I+D G+ E+ D E E + R L DL+L L Sbjct: 76 RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 121 >gi|294011701|ref|YP_003545161.1| GTP-binding protein Era [Sphingobium japonicum UT26S] gi|292675031|dbj|BAI96549.1| GTP-binding protein Era [Sphingobium japonicum UT26S] Length = 302 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 48/175 (27%), Positives = 81/175 (46%), Gaps = 27/175 (15%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRET 280 I I+G NAGKS+L NAL + VAI + TTR V+ + ++ + +V + DT GI + Sbjct: 13 IAIVGAPNAGKSTLVNALVGQKVAITSPKAQTTRTRVMGVAIEGDAQMV-LVDTPGIFQP 71 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE----INSKKE------ISFPKNIDFIF----IG 326 +++ ++ + + ADLI L+ + + +K E + P+ I I Sbjct: 72 KRRLDRAMVQAAWGGAQGADLIALVVDGKAGLGAKMEPIVGALAARPEKKWLILNKVDIA 131 Query: 327 TKSDLYSTYTEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374 K L Y+ L +S+ TG+GL EL K+ + + P+ P Sbjct: 132 IKEKLLVHTQRLYEQLDIAETFFVSAATGDGLPEL----KTAFARAMPEGPWHFP 182 >gi|87199823|ref|YP_497080.1| GTP-binding protein Era [Novosphingobium aromaticivorans DSM 12444] gi|87135504|gb|ABD26246.1| GTP-binding protein Era [Novosphingobium aromaticivorans DSM 12444] Length = 297 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 53/92 (57%), Gaps = 2/92 (2%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTIDLDLEGYLVKISDTAGIRET 280 + +LG NAGKS+L NAL + VAIV+ TTR ++ I L+ E ++ ++DT G+ E Sbjct: 8 VAVLGAPNAGKSTLVNALVGQKVAIVSAKAQTTRARLMGIALEGEAQII-LADTPGLFEP 66 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKK 312 +++ + + + AD ILL+ + KK Sbjct: 67 RRRLDRAMVSAAWDGAQEADAILLVVDARKKK 98 >gi|26247146|ref|NP_753186.1| hypothetical protein c1272 [Escherichia coli CFT073] gi|227888003|ref|ZP_04005808.1| possible GTP-binding protein [Escherichia coli 83972] gi|26107547|gb|AAN79746.1|AE016759_20 Hypothetical protein yeeP [Escherichia coli CFT073] gi|227834999|gb|EEJ45465.1| possible GTP-binding protein [Escherichia coli 83972] gi|307553020|gb|ADN45795.1| conserved hypothetical protein containing GTP-binding domain [Escherichia coli ABU 83972] Length = 290 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L +S HI + L ++ + I I+G S AGKSSL NAL + +V V+D+ TR+V Sbjct: 17 LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 75 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305 L G+ + I+D G+ E+ D E E + R L DL+L L Sbjct: 76 RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 121 >gi|191167163|ref|ZP_03028983.1| putative GTPase [Escherichia coli B7A] gi|293402935|ref|ZP_06647032.1| yeeP protein [Escherichia coli FVEC1412] gi|298378463|ref|ZP_06988347.1| yeeP protein [Escherichia coli FVEC1302] gi|312966004|ref|ZP_07780230.1| uncharacterized protein yfjP [Escherichia coli 2362-75] gi|190902820|gb|EDV62549.1| putative GTPase [Escherichia coli B7A] gi|291429850|gb|EFF02864.1| yeeP protein [Escherichia coli FVEC1412] gi|298280797|gb|EFI22298.1| yeeP protein [Escherichia coli FVEC1302] gi|312289247|gb|EFR17141.1| uncharacterized protein yfjP [Escherichia coli 2362-75] gi|323950630|gb|EGB46508.1| hypothetical protein ERKG_02958 [Escherichia coli H252] Length = 290 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L +S HI + L ++ + I I+G S AGKSSL NAL + +V V+D+ TR+V Sbjct: 17 LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 75 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305 L G+ + I+D G+ E+ D E E + R L DL+L L Sbjct: 76 RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 121 >gi|320662211|gb|EFX29612.1| hypothetical protein ECO5905_10093 [Escherichia coli O55:H7 str. USDA 5905] Length = 290 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L +S HI + L ++ + I I+G S AGKSSL NAL + +V V+D+ TR+V Sbjct: 17 LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 75 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305 L G+ + I+D G+ E+ D E E + R L DL+L L Sbjct: 76 RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PKLDLVLWL 121 >gi|89054660|ref|YP_510111.1| GTP-binding protein EngA [Jannaschia sp. CCS1] gi|122498632|sp|Q28QC6|DER_JANSC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|88864209|gb|ABD55086.1| Small GTP-binding protein domain [Jannaschia sp. CCS1] Length = 479 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 1/92 (1%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 + + I+G N GKS+LFN L + +A+V D PG TRD+ L + DTAG+ + Sbjct: 3 FTLAIVGRPNVGKSTLFNRLVGRKLALVDDQPGVTRDLREGAARLADLRFTVIDTAGLED 62 Query: 280 T-DDIVEKEGIKRTFLEVENADLILLLKEINS 310 DD +E + T V AD L + + + Sbjct: 63 ANDDSLEGRMRRLTERAVSMADATLFVMDARA 94 Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 38/66 (57%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I ++G NAGKS+L N + +D + G TRD + + + + ++I DTAG+R+ Sbjct: 192 QIAVVGRPNAGKSTLINQIIGEDRLLTGPEAGITRDAIGLTFEWDDVPMRIFDTAGMRKR 251 Query: 281 DDIVEK 286 + EK Sbjct: 252 AKVQEK 257 >gi|225182107|ref|ZP_03735535.1| GTP-binding protein Era [Dethiobacter alkaliphilus AHT 1] gi|225167194|gb|EEG76017.1| GTP-binding protein Era [Dethiobacter alkaliphilus AHT 1] Length = 302 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 1/91 (1%) Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274 + R+G+ I ++G N GKS+L NA + +AI++D P TTR+ + L + Y DT Sbjct: 7 MFRSGF-IALIGRPNVGKSTLMNAFVGEKMAIISDKPQTTRNQIRGILTADDYQAVFLDT 65 Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLL 305 GI + + ++ ++ ++ DLIL L Sbjct: 66 PGIHKPQHKLGEKMVQVAVRTLQEVDLILFL 96 >gi|120602432|ref|YP_966832.1| small GTP-binding protein [Desulfovibrio vulgaris DP4] gi|120562661|gb|ABM28405.1| iron-only hydrogenase maturation protein HydF [Desulfovibrio vulgaris DP4] Length = 410 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 37/88 (42%), Positives = 50/88 (56%), Gaps = 4/88 (4%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGIRE 279 I I G N GKSSL NAL ++ V+IV+ PGTT D + T+++ G +V I DTAGI + Sbjct: 12 IGIYGRRNVGKSSLLNALTRQTVSIVSATPGTTTDPVEKTMEMAPIGPVVFI-DTAGIDD 70 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKE 307 T D+ RT + DL L+ E Sbjct: 71 TGDLGLMRS-DRTRQMFDRTDLALVASE 97 >gi|330791039|ref|XP_003283602.1| hypothetical protein DICPUDRAFT_6420 [Dictyostelium purpureum] gi|325086462|gb|EGC39851.1| hypothetical protein DICPUDRAFT_6420 [Dictyostelium purpureum] Length = 461 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/89 (35%), Positives = 52/89 (58%), Gaps = 4/89 (4%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID-LDLEGYLVKISDTAGIRE 279 +I I+G NAGKSSL N + + +IV+DIPGTT D + + L + + + + DTAGIR Sbjct: 197 RISIVGKPNAGKSSLLNKIIDEQRSIVSDIPGTTHDPVDCNFLWRDKHELCLVDTAGIRR 256 Query: 280 --TDDI-VEKEGIKRTFLEVENADLILLL 305 T + +EK + +E + ++ L+ Sbjct: 257 RSTHKVGLEKSSVLWALKSIEKSHVVFLV 285 Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust. Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 7/96 (7%) Query: 222 IVILGHSNAGKSSLFNALAK-KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRE 279 I I+G N GKS++FN + + + A+V +IPGTTRD + L G + DT G I E Sbjct: 3 IAIIGKPNVGKSTIFNRIIQGQRQALVEEIPGTTRDRYYGEAFLYGREFILVDTGGLIGE 62 Query: 280 TDDIVEKEGIKRTF-----LEVENADLILLLKEINS 310 D EK+ ++ + +E +D IL + + S Sbjct: 63 PKDEGEKDQFQQVIHSQAEIAIEESDAILFVLDYKS 98 >gi|218706547|ref|YP_002414066.1| hypothetical protein ECUMN_3399 [Escherichia coli UMN026] gi|254038095|ref|ZP_04872153.1| YeeP protein [Escherichia sp. 1_1_43] gi|218433644|emb|CAR14558.1| conserved hypothetical protein with GTPase domain [Escherichia coli UMN026] gi|226839719|gb|EEH71740.1| YeeP protein [Escherichia sp. 1_1_43] Length = 303 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L +S HI + L ++ + I I+G S AGKSSL NAL + +V V+D+ TR+V Sbjct: 30 LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVLAGTREVQ 88 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305 L G+ + I+D G+ E+ D E E + R L DL+L L Sbjct: 89 RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 134 >gi|94269340|ref|ZP_01291433.1| probable tRNA modification GTPase (TrmE) [delta proteobacterium MLMS-1] gi|93451252|gb|EAT02147.1| probable tRNA modification GTPase (TrmE) [delta proteobacterium MLMS-1] Length = 122 Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 33/100 (33%), Positives = 52/100 (52%), Gaps = 2/100 (2%) Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLP--FSIPSHKRHLYHLSQTVRYLEMASLNEKDC 400 IS+ TG+GLEEL I + L+ + P +P+ + + V + + Sbjct: 23 ISARTGQGLEELTEAIFTALTGGRHRDPEHACVPNARHEAALQAALVAARRTTTTLQSGG 82 Query: 401 GLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++A L+ A +LG+I G E+LLD IFS+FCIGK Sbjct: 83 APELLAVELQGALAALGEIVGETSGEELLDAIFSRFCIGK 122 >gi|308235717|ref|ZP_07666454.1| bifunctional cytidylate kinase/GTP-binding protein [Gardnerella vaginalis ATCC 14018] gi|311114732|ref|YP_003985953.1| ribosome-associated GTPase EngA [Gardnerella vaginalis ATCC 14019] gi|310946226|gb|ADP38930.1| ribosome-associated GTPase EngA [Gardnerella vaginalis ATCC 14019] Length = 734 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 32/55 (58%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 I ++G N GKS+L N + VA+V D PG TRD ++ D + G K+ DT G Sbjct: 300 IAVIGRPNVGKSTLVNRILGHRVAVVEDTPGVTRDRVSYDAEWAGTNFKLVDTGG 354 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 7/90 (7%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGIR 278 ++ ++G N GKSSL N LA ++ ++V D+ GTTRD + + +D E +L DTAGI+ Sbjct: 474 RVALVGRPNVGKSSLLNHLAHEERSVVNDLAGTTRDPVDEVVRVDGEDWL--FIDTAGIK 531 Query: 279 ETDDIV---EKEGIKRTFLEVENADLILLL 305 + E RT +E ++L L+L Sbjct: 532 RRQHKLTGAEYYSSLRTQAAIERSELALIL 561 >gi|110640536|ref|YP_668264.1| hypothetical protein ECP_0331 [Escherichia coli 536] gi|191171299|ref|ZP_03032849.1| putative GTPase [Escherichia coli F11] gi|28316254|emb|CAD66199.1| hypothetical protein [Escherichia coli] gi|110342128|gb|ABG68365.1| hypothetical protein ECP_0331 [Escherichia coli 536] gi|190908599|gb|EDV68188.1| putative GTPase [Escherichia coli F11] Length = 290 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L +S HI + L ++ + I I+G S AGKSSL NAL + +V V+D+ TR+V Sbjct: 17 LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQ 75 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305 L G+ + I+D G+ E+ D E E + R L DL+L L Sbjct: 76 RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 121 >gi|300816620|ref|ZP_07096841.1| small GTP-binding protein [Escherichia coli MS 107-1] gi|300530850|gb|EFK51912.1| small GTP-binding protein [Escherichia coli MS 107-1] Length = 290 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L +S HI + L ++ + I I+G S AGKSSL NAL + +V V+D+ TR+V Sbjct: 17 LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 75 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305 L G+ + I+D G+ E+ D E E + R L DL+L L Sbjct: 76 RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--SELDLVLWL 121 >gi|306814136|ref|ZP_07448304.1| hypothetical protein ECNC101_18876 [Escherichia coli NC101] gi|305852501|gb|EFM52951.1| hypothetical protein ECNC101_18876 [Escherichia coli NC101] Length = 290 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L +S HI + L ++ + I I+G S AGKSSL NAL + +V V+D+ TR+V Sbjct: 17 LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 75 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305 L G+ + I+D G+ E+ D E E + R L DL+L L Sbjct: 76 RFRLSGHGHNMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 121 >gi|257867660|ref|ZP_05647313.1| GTP-binding protein engA [Enterococcus casseliflavus EC30] gi|257801743|gb|EEV30646.1| GTP-binding protein engA [Enterococcus casseliflavus EC30] Length = 234 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS++FN +A + ++IV D PG TRD + + G + DT GI +D Sbjct: 6 IAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYATGEWLGREFSVIDTGGIDLSD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + + + ++ AD+I+ + Sbjct: 66 EPFMDQIKHQAEIAIDEADVIVFI 89 Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 34/58 (58%), Gaps = 1/58 (1%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGI 277 K ++G N GKSSL NA+ ++ IV+DI GTTRD + E G + DTAG+ Sbjct: 176 KFSLIGRPNVGKSSLINAILGEERVIVSDIEGTTRDAIDTHFTSESGQEFTMIDTAGM 233 >gi|237704001|ref|ZP_04534482.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|226901913|gb|EEH88172.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|281181410|dbj|BAI57740.1| conserved hypothetical protein [Escherichia coli SE15] gi|323955418|gb|EGB51186.1| hypothetical protein ERLG_03326 [Escherichia coli H263] Length = 290 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L +S HI + L ++ + I I+G S AGKSSL NAL + +V V+D+ TR+V Sbjct: 17 LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 75 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305 L G+ + I+D G+ E+ D E E + R L DL+L L Sbjct: 76 RFRLSGHGHSMIITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 121 >gi|134101736|ref|YP_001107397.1| GTP-binding protein EngA [Saccharopolyspora erythraea NRRL 2338] gi|291003092|ref|ZP_06561065.1| GTP-binding protein EngA [Saccharopolyspora erythraea NRRL 2338] gi|133914359|emb|CAM04472.1| small GTP-binding protein domain [Saccharopolyspora erythraea NRRL 2338] Length = 480 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/91 (35%), Positives = 52/91 (57%), Gaps = 5/91 (5%) Query: 189 SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVT 248 S ++L+ IL + D+ H GK G ++ ++G N GKSSL N L + A+V Sbjct: 189 SGDLLDKILAVFPDVP-HEEFGKTG----GPRRVALVGKPNVGKSSLLNRLTGELRAVVD 243 Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 D+ GTT D + ++L+G + + DTAG+R+ Sbjct: 244 DVAGTTVDPVDSLVELDGEVWRFVDTAGLRK 274 Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 29/55 (52%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 + ++G N GKS+L N L + A+V D PG TRD + D G + DT G Sbjct: 43 LAVVGRPNVGKSTLVNRLLGRREAVVQDTPGVTRDRVAYDALWNGRRFTVVDTGG 97 >gi|291535879|emb|CBL08991.1| iron-only hydrogenase maturation protein HydF [Roseburia intestinalis M50/1] Length = 453 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 53/90 (58%), Gaps = 4/90 (4%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDTA 275 N I + G +N+GKSS NA ++V+IV D+ GTT D + +++ G V I DTA Sbjct: 38 NRLHIGVFGKTNSGKSSFINAFTHQEVSIVADVAGTTTDPVYKPMEISPLGPCV-IIDTA 96 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLL 305 G + ++ E+ +++T L E AD+ +++ Sbjct: 97 GFDDETELGERR-VEKTKLAAEKADIAVIV 125 >gi|257464226|ref|ZP_05628605.1| GTP-binding protein Era [Fusobacterium sp. D12] gi|317061746|ref|ZP_07926231.1| GTP-binding protein era [Fusobacterium sp. D12] gi|313687422|gb|EFS24257.1| GTP-binding protein era [Fusobacterium sp. D12] Length = 296 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 2/94 (2%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+L N L + VAIV+D GTTRD + L+++G DT GI + Sbjct: 6 IAVVGRPNVGKSTLMNKLVAEKVAIVSDKAGTTRDNIKGILNVQGKQYIFIDTPGIHKPK 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 ++ + ++AD IL L ++ +EIS Sbjct: 66 HLLGEYMTDIAIRSFKDADAILFL--LDGTQEIS 97 >gi|197117132|ref|YP_002137559.1| GTP-binding protein EngA [Geobacter bemidjiensis Bem] gi|238690874|sp|B5EE25|DER_GEOBB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|197086492|gb|ACH37763.1| GTPase EngA [Geobacter bemidjiensis Bem] Length = 440 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 I I+G N GKS+LFN L + A+V D+PG TRD +++ + DT G ET Sbjct: 5 IAIVGRPNVGKSTLFNRLVGRRKAMVDDMPGVTRDRNYAEVNRFDVPFILVDTGGFEPET 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 D + ++ +++ ++ ADLIL + Sbjct: 65 SDRLLQQMREQSRFAMDEADLILFI 89 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 +I ++G N GKS+L N L + + GTTRD + + + DTAGIR Sbjct: 177 RIAVVGRPNVGKSTLVNRLLGYERVVANPTAGTTRDAVDTRFTVNKKPYLLIDTAGIRRK 236 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305 +T VEK + +E AD++L++ Sbjct: 237 GKTVQKVEKYSVMDALRSIERADVVLIV 264 >gi|15644215|ref|NP_229266.1| ribosome biogenesis GTP-binding protein YsxC [Thermotoga maritima MSB8] gi|13124246|sp|Q9X1H7|ENGB_THEMA RecName: Full=Probable GTP-binding protein EngB gi|4982031|gb|AAD36534.1|AE001797_14 conserved hypothetical protein [Thermotoga maritima MSB8] Length = 195 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 76/167 (45%), Gaps = 26/167 (15%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS--DTAGIRE 279 + +G SN GKSSL NAL + +A V+ PG TR + ++ + Y V + A + + Sbjct: 26 VAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSK 85 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPK--NIDFIFIGTKSD- 330 + ++ K ++ F + ++ LL + + + + K NI F + TK D Sbjct: 86 KERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDK 145 Query: 331 ---------------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362 ++S Y E SS TGEG+ EL++ I ++L Sbjct: 146 VKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTLL 192 >gi|323971898|gb|EGB67122.1| hypothetical protein ERHG_02102 [Escherichia coli TA007] Length = 290 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L +S HI + L ++ + I I+G S AGKSSL NAL + +V V+D+ TR+V Sbjct: 17 LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVYAGTREVQ 75 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305 L G+ + I+D G+ E+ D E E + R L DL+L L Sbjct: 76 RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 121 >gi|332344899|gb|AEE58233.1| conserved hypothetical protein [Escherichia coli UMNK88] Length = 290 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/108 (35%), Positives = 57/108 (52%), Gaps = 4/108 (3%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L +S HI + L ++ + I I+G S AGKSSL NAL + ++ V+D+ TR+V Sbjct: 17 LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEITPVSDVHAGTREVR 75 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305 L G+ + I+D G+ E+ D E E + R L DL+L L Sbjct: 76 RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRNIL--PELDLVLWL 121 >gi|309702300|emb|CBJ01620.1| putative ATP/GTP-binding protein [Escherichia coli ETEC H10407] Length = 290 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L +S HI + L ++ + I I+G S AGKSSL NAL + +V V+D+ TR+V Sbjct: 17 LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 75 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305 L G+ + I+D G+ E+ D E E + R L DL+L L Sbjct: 76 RFRLSGHGHSMIITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 121 >gi|298528797|ref|ZP_07016201.1| ribosome-associated GTPase EngA [Desulfonatronospira thiodismutans ASO3-1] gi|298512449|gb|EFI36351.1| ribosome-associated GTPase EngA [Desulfonatronospira thiodismutans ASO3-1] Length = 442 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 +VI+G N GKS+LFN L +++ A+V D PG TRD L + + DT G + E Sbjct: 12 VVIVGRPNVGKSTLFNRLLRQNKAMVHDRPGVTRDSLYGRVQGRTRDYTLVDTGGLVLEQ 71 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 +E+E ++ + +ADLIL + Sbjct: 72 GAQLEEEIYEQVREAMHSADLILFM 96 Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 5/89 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE- 279 ++ +LG N GKSSL N L ++ +V+ GTTRD + + L+ DTAG+R Sbjct: 184 RLSLLGRPNVGKSSLVNTLLGQERVLVSSRAGTTRDCVDVILEKGDKRYVFIDTAGVRRK 243 Query: 280 ---TDDIVEKEGIKRTFLEVENADLILLL 305 +DD+ E+ R + +D+ LL+ Sbjct: 244 TTISDDL-ERFSALRAIRSCQRSDVALLV 271 >gi|323945945|gb|EGB41985.1| hypothetical protein EREG_02489 [Escherichia coli H120] Length = 290 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/114 (34%), Positives = 60/114 (52%), Gaps = 4/114 (3%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L +S HI + L ++ + I I+G S AGKSSL NAL + +V V+D+ TR+V Sbjct: 17 LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 75 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLLKEINSK 311 L G+ + I+D G+ E+ D E E + R L DL+L L + + + Sbjct: 76 RFRLSGHGHSMIITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWLIKADDR 127 >gi|293416385|ref|ZP_06659024.1| hypothetical protein ECDG_03140 [Escherichia coli B185] gi|291431741|gb|EFF04724.1| hypothetical protein ECDG_03140 [Escherichia coli B185] Length = 290 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L +S HI + L ++ + I I+G S AGKSSL NAL + +V V+D+ TR+V Sbjct: 17 LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 75 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305 L G+ + I+D G+ E+ D E E + R L DL+L L Sbjct: 76 RFRLSGHGHSMIITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 121 >gi|323136434|ref|ZP_08071516.1| GTP-binding proten HflX [Methylocystis sp. ATCC 49242] gi|322398508|gb|EFY01028.1| GTP-binding proten HflX [Methylocystis sp. ATCC 49242] Length = 444 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/171 (25%), Positives = 81/171 (47%), Gaps = 30/171 (17%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280 + ++G++NAGKS+LFN L K +V + D+ T D + L G V +SDT G Sbjct: 215 VALVGYTNAGKSTLFNRLTKAEV-LAQDMLFATLDPTLRQIRLPHGARVLLSDTVGFISD 273 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF--IGTKSDLYSTYTEE 338 + + T EV AD+IL +++++ + + ++++ I +G K + E Sbjct: 274 LPTMLVSAFRATLEEVTLADVILHVRDVSHEDSEAQARDVETILDELGLKGEAEGRILEV 333 Query: 339 YDH--------------------------LISSFTGEGLEELINKIKSILS 363 ++ L S+ TG+GL+EL+ +I++IL+ Sbjct: 334 WNKIDALDPERQEALRQTARGFDPQRRPVLASALTGQGLDELLARIETILA 384 >gi|237734921|ref|ZP_04565402.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|229382249|gb|EEO32340.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 395 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 84/171 (49%), Gaps = 25/171 (14%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276 N I G N+GKS+L NA ++V+IV+ PGTT D + ++++G + DTAG Sbjct: 11 NRLHIGFFGKRNSGKSALINAFVNQEVSIVSSEPGTTTDPVYKAMEIDGLGPCLLVDTAG 70 Query: 277 IRETDDI-----VEKEGIKRTFLEVENADLILLLKEINSKKEISF-----PKNIDFIFIG 326 DDI + + K+ +++ A I+L + +E+ + K+I I + Sbjct: 71 F---DDIGTLGQLRNDKTKKASEKIDIA--IILFNDRKICQELDWYHYFKEKHIPTILVI 125 Query: 327 TKSDL---------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKK 368 +K+DL + T E LISS T +G++EL K+ + F+K Sbjct: 126 SKADLQRNDNLLKKVTEATSETPLLISSLTKQGIKELQEKLLEKVPADFEK 176 >gi|253699395|ref|YP_003020584.1| GTP-binding protein EngA [Geobacter sp. M21] gi|259645878|sp|C6E0Y6|DER_GEOSM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|251774245|gb|ACT16826.1| small GTP-binding protein [Geobacter sp. M21] Length = 440 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 I I+G N GKS+LFN L + A+V D+PG TRD +++ + DT G ET Sbjct: 5 IAIVGRPNVGKSTLFNRLVGRRKAMVDDMPGVTRDRNYAEVNRFDVPFILVDTGGFEPET 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 D + ++ +++ ++ ADLIL + Sbjct: 65 SDRLLQQMREQSRFAMDEADLILFV 89 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 +I ++G N GKS+L N L + + GTTRD + + + DTAGIR Sbjct: 177 RIAVVGRPNVGKSTLVNRLLGYERVVANPTAGTTRDAVDTRFTVNKKPYLLIDTAGIRRK 236 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305 +T VEK + +E AD++L++ Sbjct: 237 GKTVQKVEKYSVMDALRSIERADVVLIV 264 >gi|167756284|ref|ZP_02428411.1| hypothetical protein CLORAM_01817 [Clostridium ramosum DSM 1402] gi|167703692|gb|EDS18271.1| hypothetical protein CLORAM_01817 [Clostridium ramosum DSM 1402] Length = 395 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 84/171 (49%), Gaps = 25/171 (14%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276 N I G N+GKS+L NA ++V+IV+ PGTT D + ++++G + DTAG Sbjct: 11 NRLHIGFFGKRNSGKSALINAFVNQEVSIVSSEPGTTTDPVYKAMEIDGLGPCLLVDTAG 70 Query: 277 IRETDDI-----VEKEGIKRTFLEVENADLILLLKEINSKKEISF-----PKNIDFIFIG 326 DDI + + K+ +++ A I+L + +E+ + K+I I + Sbjct: 71 F---DDIGTLGQLRNDKTKKASEKIDIA--IILFNDRKICQELDWYHYFKEKHIPTILVI 125 Query: 327 TKSDLY---------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKK 368 +K+DL + T E LISS T +G++EL K+ + F+K Sbjct: 126 SKADLQRNDNLLKKITEATSETPLLISSLTKQGIKELQEKLLEKVPADFEK 176 >gi|194436751|ref|ZP_03068851.1| putative GTPase [Escherichia coli 101-1] gi|194424233|gb|EDX40220.1| putative GTPase [Escherichia coli 101-1] Length = 290 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L +S HI + L ++ + I I+G S AGKSSL NAL + +V V+D+ TR+V Sbjct: 17 LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQ 75 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305 L G+ + I+D G+ E+ D E E + R L DL+L L Sbjct: 76 RFRLSGHGHSMIITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 121 >gi|169350534|ref|ZP_02867472.1| hypothetical protein CLOSPI_01302 [Clostridium spiroforme DSM 1552] gi|169292854|gb|EDS74987.1| hypothetical protein CLOSPI_01302 [Clostridium spiroforme DSM 1552] Length = 396 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 16/166 (9%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276 N I G N+GKSSL NA ++V+IV+++ GTT D + ++++G + DTAG Sbjct: 11 NRIHIGFFGKRNSGKSSLINAFVNQEVSIVSNVAGTTTDPVYKAMEIQGIGPCVLIDTAG 70 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF-----PKNIDFIFIGTKSDL 331 + D+ ++T E DL +++ + +E+++ K+I I + K DL Sbjct: 71 FDDVGDLGNLRN-RKTKKTSEKIDLAIIIFSDDISEELAWYQYFKNKHITIIPVINKIDL 129 Query: 332 YSTYTEEYDH---------LISSFTGEGLEELINKIKSILSNKFKK 368 + L+S+ T +G+ EL NKI + N ++K Sbjct: 130 EIEEEIINNVEKNIQCKPILVSTKTKQGITELKNKIIQNIPNDYEK 175 >gi|57864890|gb|AAW57064.1| iron(II)transporter [cyanobacterium endosymbiont of Rhopalodia gibba] Length = 210 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS LFN L V++ PGTT D+ + G V I DT G+ Sbjct: 44 IALVGSPNVGKSLLFNLLTG-SYTTVSNYPGTTVDISKGQAIISGQTVSIIDTPGMYSLI 102 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 + E+E R FL E+ DL++ Sbjct: 103 PMTEEEQCSRDFLLTESIDLVI 124 >gi|258542822|ref|YP_003188255.1| GTP-binding GTPase HflX/HSR1 [Acetobacter pasteurianus IFO 3283-01] gi|256633900|dbj|BAH99875.1| GTP-binding GTPase HflX/HSR1 [Acetobacter pasteurianus IFO 3283-01] gi|256636959|dbj|BAI02928.1| GTP-binding GTPase HflX/HSR1 [Acetobacter pasteurianus IFO 3283-03] gi|256640012|dbj|BAI05974.1| GTP-binding GTPase HflX/HSR1 [Acetobacter pasteurianus IFO 3283-07] gi|256643068|dbj|BAI09023.1| GTP-binding GTPase HflX/HSR1 [Acetobacter pasteurianus IFO 3283-22] gi|256646123|dbj|BAI12071.1| GTP-binding GTPase HflX/HSR1 [Acetobacter pasteurianus IFO 3283-26] gi|256649176|dbj|BAI15117.1| GTP-binding GTPase HflX/HSR1 [Acetobacter pasteurianus IFO 3283-32] gi|256652163|dbj|BAI18097.1| GTP-binding GTPase HflX/HSR1 [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655220|dbj|BAI21147.1| GTP-binding GTPase HflX/HSR1 [Acetobacter pasteurianus IFO 3283-12] Length = 448 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 49/179 (27%), Positives = 81/179 (45%), Gaps = 29/179 (16%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRET 280 + ++G++NAGKS+LFNAL V + T + IDL G V +SDT G Sbjct: 221 VALVGYTNAGKSTLFNALTGATVYAQDQLFATLDPTMRAIDLP-SGRRVILSDTVGF--I 277 Query: 281 DDIVEK--EGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSD--LYSTYT 336 D+ + + T EV AD+IL ++++ S K++ + G D L + Sbjct: 278 SDLPTELIAAFRATLEEVAEADIILHVRDVAHPDSASQKKDVLGVLEGMAKDDMLEQDWP 337 Query: 337 E-------EYDHL--------------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374 E + D L IS+ TGEGLE L+ +I + ++ + + + +P Sbjct: 338 ERIIEVLNKVDLLGGPEAIPQTEDTIAISAITGEGLETLLARIDARITQGMETVRYCLP 396 >gi|108799893|ref|YP_640090.1| GTP-binding protein EngA [Mycobacterium sp. MCS] gi|119869003|ref|YP_938955.1| GTP-binding protein EngA [Mycobacterium sp. KMS] gi|126435521|ref|YP_001071212.1| GTP-binding protein EngA [Mycobacterium sp. JLS] gi|108770312|gb|ABG09034.1| Small GTP-binding protein domain protein [Mycobacterium sp. MCS] gi|119695092|gb|ABL92165.1| small GTP-binding protein [Mycobacterium sp. KMS] gi|126235321|gb|ABN98721.1| small GTP-binding protein [Mycobacterium sp. JLS] Length = 471 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 43/84 (51%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+L N + + A+V DIPG TRD ++ D G + DT G Sbjct: 37 VAVVGRPNVGKSTLVNRILGRREAVVQDIPGVTRDRVSYDATWSGRRFVVQDTGGWEPDA 96 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 +++ + + + AD I+L+ Sbjct: 97 KGLQQLVADQATVAMRTADAIILV 120 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 51/90 (56%), Gaps = 7/90 (7%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ ++G N GKSSL N LA + ++V D+ GTT D + ++L G + DTAG+R Sbjct: 209 RVALVGKPNVGKSSLLNRLAGDERSVVHDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRK 268 Query: 281 DDIVEKEGIK-----RTFLEVENADLILLL 305 + + G + RT ++ A+++L+L Sbjct: 269 --VGQASGHEFYASVRTHGAIDAAEVVLVL 296 >gi|323138582|ref|ZP_08073650.1| ribosome-associated GTPase EngA [Methylocystis sp. ATCC 49242] gi|322396216|gb|EFX98749.1| ribosome-associated GTPase EngA [Methylocystis sp. ATCC 49242] Length = 466 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/60 (43%), Positives = 34/60 (56%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 + + I+G N GKS+LFN L K +A+V D PG TRD + L I DTAG+ E Sbjct: 3 FSLAIIGRPNVGKSTLFNRLTGKKLALVDDRPGVTRDRREGEARLADLRFTIIDTAGLEE 62 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 38/66 (57%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I ++G NAGKS+L N + +D + G TRD + +D +K+ DTAG+R+ Sbjct: 198 RIAVVGRPNAGKSTLINRILGEDRLLTGPEAGITRDSIGVDFVWRDRKMKLFDTAGLRKR 257 Query: 281 DDIVEK 286 +V+K Sbjct: 258 AKVVDK 263 >gi|315652502|ref|ZP_07905486.1| GTP-binding protein Era [Eubacterium saburreum DSM 3986] gi|315485218|gb|EFU75616.1| GTP-binding protein Era [Eubacterium saburreum DSM 3986] Length = 304 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/97 (31%), Positives = 57/97 (58%), Gaps = 3/97 (3%) Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVK 270 +GE +++G+ + ++G N GKS+L N L + +AI + P TTR+ + T+ D G +V Sbjct: 2 IGEYMKSGF-VALIGRPNVGKSTLMNTLIGQKIAITSSKPQTTRNRIQTVFTDERGQIVF 60 Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307 + DT GI + + + + +K + + + DL+L L E Sbjct: 61 L-DTPGIHKAKNKLGEYMVKVSTRTLRDVDLVLWLVE 96 >gi|147677230|ref|YP_001211445.1| GTPase [Pelotomaculum thermopropionicum SI] gi|146273327|dbj|BAF59076.1| GTPase [Pelotomaculum thermopropionicum SI] Length = 300 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 48/194 (24%), Positives = 85/194 (43%), Gaps = 24/194 (12%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R+G+ + I+G +N GKS+L N+L + VAI+++ P TTR+ + L E V DT G Sbjct: 7 RSGF-VAIIGRTNVGKSTLLNSLLGRKVAIMSEKPQTTRNKILCVLTREDAQVVFLDTPG 65 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIFIGT 327 + + + ++ ++ DL+L L E K+ + K + I Sbjct: 66 FHKPKHKLGEHLVQVALRTLKEVDLVLFLVEAGQPPGPGDHYVIKQFAGLKTPVLLVI-N 124 Query: 328 KSDLYS-----TYTEEYDHL--------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374 K DL E+Y L +S+ TGE L L+ + L K P + Sbjct: 125 KIDLVRREELLPLIEQYSGLFGFAEIVPVSALTGENLPRLLEVVVRYLPAGPKYYPEDVI 184 Query: 375 SHKRHLYHLSQTVR 388 + + + +++ +R Sbjct: 185 TDRPESFIMAELIR 198 >gi|148270457|ref|YP_001244917.1| ribosome biogenesis GTP-binding protein YsxC [Thermotoga petrophila RKU-1] gi|166232160|sp|A5IMB8|ENGB_THEP1 RecName: Full=Probable GTP-binding protein EngB gi|147736001|gb|ABQ47341.1| small GTP-binding protein [Thermotoga petrophila RKU-1] Length = 195 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 75/167 (44%), Gaps = 26/167 (15%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS--DTAGIRE 279 + +G SN GKSSL NAL K +A V+ PG TR + ++ + Y V + A + + Sbjct: 26 VAFVGRSNVGKSSLLNALFNKKIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSK 85 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPK--NIDFIFIGTKSDL 331 + ++ K ++ F + ++ LL + + I + K NI F + TK D Sbjct: 86 KERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDFMMIEWMKSLNIPFTIVLTKMDK 145 Query: 332 ----------------YSTYTEEYDHLISSFTGEGLEELINKIKSIL 362 +S Y E SS TGEG+ EL++ I ++L Sbjct: 146 VKMSERAKKLEEHQKEFSRYGEYTIIPTSSVTGEGISELLDLISTLL 192 >gi|331650194|ref|ZP_08351267.1| conserved hypothetical protein [Escherichia coli M605] gi|331041139|gb|EGI13296.1| conserved hypothetical protein [Escherichia coli M605] Length = 303 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/83 (39%), Positives = 46/83 (55%), Gaps = 3/83 (3%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 I+G S AGKSSL NAL + +V V+D+ TR+V L G+ + I+D G+ E+ D Sbjct: 54 IMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQRFRLSGHGHSMVITDLPGVGESRDR 113 Query: 284 -VEKEGIKRTFLEVENADLILLL 305 E E + R L DL+L L Sbjct: 114 DAEYEALYRDIL--PELDLVLWL 134 >gi|194426656|ref|ZP_03059210.1| putative GTPase [Escherichia coli B171] gi|194415395|gb|EDX31663.1| putative GTPase [Escherichia coli B171] gi|195183288|dbj|BAG66827.1| putative small GTP-binding protein [Escherichia coli O111:H-] gi|195183354|dbj|BAG66891.1| putative small GTP-binding protein [Escherichia coli O111:H-] Length = 290 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L +S HI + L ++ + I I+G S AGKSSL NAL + +V V+D+ TR+V Sbjct: 17 LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 75 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305 L G+ + I+D G+ E+ D E E + R L DL+L L Sbjct: 76 RFRLSGHGHSMIITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 121 >gi|320094216|ref|ZP_08026020.1| GTP-binding protein Era [Actinomyces sp. oral taxon 178 str. F0338] gi|319978841|gb|EFW10380.1| GTP-binding protein Era [Actinomyces sp. oral taxon 178 str. F0338] Length = 396 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/100 (33%), Positives = 51/100 (51%), Gaps = 2/100 (2%) Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D +E D + + E L + L+ D ++ I E R G+ + I+G N GKS+L Sbjct: 61 DLEDEADA-DLGAFEALASVASLRQDAAAAIGVPDYPEDFRAGF-VSIVGRPNVGKSTLT 118 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 NAL + VAI + P TTR + + +GY + + DT G Sbjct: 119 NALVGQKVAITSGRPETTRHNIRGIVHGDGYQLVLVDTPG 158 >gi|283458469|ref|YP_003363095.1| GTPase [Rothia mucilaginosa DY-18] gi|283134510|dbj|BAI65275.1| GTPase [Rothia mucilaginosa DY-18] Length = 571 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 54/179 (30%), Positives = 80/179 (44%), Gaps = 28/179 (15%) Query: 222 IVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 + I G++NAGKSSL N L V A+ + T R T D G +SDT G Sbjct: 319 VAIAGYTNAGKSSLLNRLTDAGVLVENALFATLDPTVRKAQTPD----GIGYTLSDTVGF 374 Query: 278 RETDDIVEKEGIKRTFLEVENADLILLL---------KEINSKKEISF---PKNIDFIFI 325 + E + T EV +AD+IL + +I + +E+ ++I I + Sbjct: 375 VRSLPTQLVEAFRSTLEEVADADVILHVVDASHPDPEGQIRAVREVIAEVDARHIPEIIV 434 Query: 326 GTKSD------LYSTYTEEYDHLI-SSFTGEGLEELINKIKSILSNKFKKLPFSIP-SH 376 K+D L E +H+I S+ TGEG+EEL KI + ++ IP SH Sbjct: 435 LNKADAADPFVLERMRQREPEHVIVSARTGEGIEELKQKIADTIPRPSIEVKLLIPYSH 493 >gi|296140071|ref|YP_003647314.1| ribosome-associated GTPase EngA [Tsukamurella paurometabola DSM 20162] gi|296028205|gb|ADG78975.1| ribosome-associated GTPase EngA [Tsukamurella paurometabola DSM 20162] Length = 482 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 32/55 (58%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 + I+G N GKS+L N + + A+V DIPG TRD ++ + D G + DT G Sbjct: 50 VAIVGRPNVGKSTLVNRILGRREAVVEDIPGVTRDRISYEADWAGRRFLVQDTGG 104 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 6/75 (8%) Query: 211 KLGEIIRNG------YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL 264 KL E R G ++ ++G N GKSSL N L ++ ++V ++ GTT D + ++L Sbjct: 206 KLPETPREGTGGFGPRRVALVGKPNVGKSSLLNKLTGENRSVVDNVAGTTVDPVDSLVEL 265 Query: 265 EGYLVKISDTAGIRE 279 G K DTAG+R+ Sbjct: 266 GGKTWKFIDTAGLRK 280 >gi|170766018|ref|ZP_02900829.1| putative GTPase [Escherichia albertii TW07627] gi|170125164|gb|EDS94095.1| putative GTPase [Escherichia albertii TW07627] Length = 290 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/85 (40%), Positives = 47/85 (55%), Gaps = 3/85 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G S AGKSSL NAL + +V V+D+ TR+V L G+ + I+D G+ E+ Sbjct: 39 IGIMGKSGAGKSSLCNALFQGEVTPVSDVYAGTREVQRFRLSGHGHSMVITDLPGVGESR 98 Query: 282 DI-VEKEGIKRTFLEVENADLILLL 305 D E E + R L DL+L L Sbjct: 99 DRDAEYEALYRDIL--PELDLVLWL 121 >gi|117624200|ref|YP_853113.1| hypothetical protein APECO1_1093 [Escherichia coli APEC O1] gi|115513324|gb|ABJ01399.1| conserved hypothetical protein [Escherichia coli APEC O1] Length = 303 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 3/83 (3%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 I+G S AGKSSL NAL + ++ V+D+ TR+V L+ G+ + I+D G+ E+ D Sbjct: 54 IMGKSGAGKSSLCNALFQGEITPVSDVHAGTREVQRFRLNGHGHSMVITDLPGVGESRDR 113 Query: 284 -VEKEGIKRTFLEVENADLILLL 305 E E + R L DL+L L Sbjct: 114 DAEYEALYRDIL--PELDLVLWL 134 >gi|162606364|ref|XP_001713212.1| hypothetical protein GTHECHR2139 [Guillardia theta] gi|12580678|emb|CAC26996.1| hypothetical protein [Guillardia theta] Length = 496 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/97 (32%), Positives = 52/97 (53%), Gaps = 9/97 (9%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG----YLVKISDTAG 276 K+ I+G N GKS+ N L + +IV+D PGTT D ++D + G + DTAG Sbjct: 236 KVSIIGKPNVGKSTFVNKLLGQYRSIVSDTPGTTSD--SVDSYISGGKNCNVYNFIDTAG 293 Query: 277 IRETDDI---VEKEGIKRTFLEVENADLILLLKEINS 310 I+ I +E + RT V+ ++ +L + +IN+ Sbjct: 294 IKRKKSIEFGIEYFMVNRTLKSVQKSECVLFMIDINN 330 Score = 44.3 bits (103), Expect = 0.036, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 5/89 (5%) Query: 222 IVILGHSNAGKSSLFNALAK--KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR- 278 I ++G SN GKS+L N + K KD +IV D G T+D++ + Y ++DT G Sbjct: 60 ITVVGRSNVGKSTLINRITKSNKDGSIVHDSEGVTKDIIQRKAFWKNYEFLMTDTGGFSI 119 Query: 279 --ETDDIVEKEGIKRTFLEVENADLILLL 305 + + K K+ F +E + LI+ + Sbjct: 120 NYNKKNEIYKNMTKQIFSSIEKSSLIIFV 148 >gi|257459461|ref|ZP_05624570.1| GTP-binding protein Era [Campylobacter gracilis RM3268] gi|257442886|gb|EEV18020.1| GTP-binding protein Era [Campylobacter gracilis RM3268] Length = 309 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/141 (26%), Positives = 74/141 (52%), Gaps = 8/141 (5%) Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVT-DIPGTT 254 +L+ ++S I K E +++G+ + ++G +NAGKSSL N L + +++V+ I T Sbjct: 1 MLWFNAPVASRIKFYKFKENMKSGF-VTLIGRTNAGKSSLLNYLCGEKISLVSHKINATR 59 Query: 255 RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS---- 310 R + I ++ ++ +DT G+ E+ ++ K ++ +E DL+L L ++ Sbjct: 60 RKINGIAMNGTDQVI-FTDTPGLHESAKLMNKLMVEVALGAIEGCDLVLFLAPVHDDTAE 118 Query: 311 -KKEISFPKNIDFIFIGTKSD 330 +K ++ I I I TK D Sbjct: 119 YEKFLNLNAGIKHIVILTKID 139 >gi|297544408|ref|YP_003676710.1| GTP-binding protein Era [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842183|gb|ADH60699.1| GTP-binding protein Era [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 302 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 54/98 (55%), Gaps = 9/98 (9%) Query: 219 GYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 GYK + ++G +N GKS+L NA+ ++ +AI + P TTR+ + L + Y V DT Sbjct: 2 GYKAGFVALIGRTNVGKSTLLNAILQEKIAITSPKPQTTRNTIRGILTTDEYQVIFVDTP 61 Query: 276 GIRETDDIVEK---EGIKRTFLEVENADLILLLKEINS 310 GI + + + E KRT EV DLIL + E ++ Sbjct: 62 GIHKPKSKLSEFMIEVAKRTLKEV---DLILYMIEPDT 96 >gi|254450380|ref|ZP_05063817.1| GTP-binding protein [Octadecabacter antarcticus 238] gi|198264786|gb|EDY89056.1| GTP-binding protein [Octadecabacter antarcticus 238] Length = 489 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 1/82 (1%) Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDI 283 +G N GKS+LFN L K +A+V D PG TRD+ L + DTAG+ E TD+ Sbjct: 1 MGRPNVGKSTLFNRLVCKKLALVDDQPGVTRDLREGAARLGDLRFTVIDTAGLEEATDES 60 Query: 284 VEKEGIKRTFLEVENADLILLL 305 ++ T VE AD+ L + Sbjct: 61 LQGRMRALTERAVEMADVCLFM 82 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 4/70 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYL--VKISDTAG 276 +I ++G NAGKS+L N + +D + G TRD +++ +D EG V+I DTAG Sbjct: 193 QIAVVGRPNAGKSTLINQILGEDRLLTGPEAGITRDAISVQMDWGPEGATVPVRIFDTAG 252 Query: 277 IRETDDIVEK 286 IR+ + EK Sbjct: 253 IRKRAKVQEK 262 >gi|308380152|ref|ZP_07669128.1| putative small GTP-binding protein domain protein [Mycobacterium tuberculosis SUMu011] gi|308362467|gb|EFP51318.1| putative small GTP-binding protein domain protein [Mycobacterium tuberculosis SUMu011] Length = 208 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/84 (28%), Positives = 43/84 (51%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+L N + + A+V DIPG TRD + D G + DT G Sbjct: 22 VAVVGRPNVGKSTLVNRILGRREAVVQDIPGVTRDRVCYDALWTGRRFVVQDTGGWEPNA 81 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 +++ ++ + + AD ++L+ Sbjct: 82 KGLQRLVAEQASVAMRTADAVILV 105 >gi|157154877|ref|YP_001465819.1| putative GTPase [Escherichia coli E24377A] gi|157076907|gb|ABV16615.1| putative GTPase [Escherichia coli E24377A] Length = 290 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L +S HI + L ++ + I I+G S AGKSSL NAL + +V V+D+ TR+V Sbjct: 17 LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 75 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305 L G+ + I+D G+ E+ D E E + R L DL+L L Sbjct: 76 RFRLSGHGHSMIITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 121 >gi|308049760|ref|YP_003913326.1| iron-only hydrogenase maturation protein HydF [Ferrimonas balearica DSM 9799] gi|307631950|gb|ADN76252.1| iron-only hydrogenase maturation protein HydF [Ferrimonas balearica DSM 9799] Length = 407 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 75/171 (43%), Gaps = 24/171 (14%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIR 278 Y I ++G NAGKSSL N L + V+IV+D GTT D + +L V DTAGI Sbjct: 15 YHIALVGRRNAGKSSLLNLLTGQAVSIVSDTAGTTTDAVNKPFELLPLGPVTFIDTAGID 74 Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN----------IDFIFIGTK 328 + ++ E + T + AD+ L + + ++ I+ P + + + K Sbjct: 75 DEGELGELR-VAATHKALNRADMALYVVD---EQGITAPDRAFIEQQLALGLPMLLVFNK 130 Query: 329 SDLYS------TYTEEYD---HLISSFTGEGLEELINKIKSILSNKFKKLP 370 +DL S + + + L SS G+G + + + + K P Sbjct: 131 TDLQSPSEADLAWCQSHQLPVELASSVAGQGRTMICQTLYQLAPEELKAKP 181 >gi|325678850|ref|ZP_08158448.1| hydrogenase maturation GTPase HydF [Ruminococcus albus 8] gi|324109354|gb|EGC03572.1| hydrogenase maturation GTPase HydF [Ruminococcus albus 8] Length = 396 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 68/134 (50%), Gaps = 14/134 (10%) Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKI 271 GE + G+ G NAGKSS+ NA +++AIV+D PGTT D + ++L V I Sbjct: 9 GERVHIGF----FGRRNAGKSSVVNAFTNQELAIVSDTPGTTTDPVYKAMELLPMGPVMI 64 Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI-----NSKKEIS---FPKNIDFI 323 DT G + ++ E +K+T + D +L+ + +S+K+++ K I +I Sbjct: 65 IDTPGYDDEGELGELR-VKKTVQVLGKTDCAVLVTDCTRELDDSEKQLTELFVQKKIPYI 123 Query: 324 FIGTKSDLYSTYTE 337 KSDL + + Sbjct: 124 IAKNKSDLLESVPQ 137 >gi|255326352|ref|ZP_05367436.1| small GTP-binding protein [Rothia mucilaginosa ATCC 25296] gi|255296569|gb|EET75902.1| small GTP-binding protein [Rothia mucilaginosa ATCC 25296] Length = 570 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 54/179 (30%), Positives = 80/179 (44%), Gaps = 28/179 (15%) Query: 222 IVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 + I G++NAGKSSL N L V A+ + T R T D G +SDT G Sbjct: 318 VAIAGYTNAGKSSLLNRLTDAGVLVENALFATLDPTVRKAQTPD----GIGYTLSDTVGF 373 Query: 278 RETDDIVEKEGIKRTFLEVENADLILLL---------KEINSKKEISF---PKNIDFIFI 325 + E + T EV +AD+IL + +I + +E+ ++I I + Sbjct: 374 VRSLPTQLVEAFRSTLEEVADADVILHVVDASHPDPEGQIRAVREVIAEVDARHIPEIIV 433 Query: 326 GTKSD------LYSTYTEEYDHLI-SSFTGEGLEELINKIKSILSNKFKKLPFSIP-SH 376 K+D L E +H+I S+ TGEG+EEL KI + ++ IP SH Sbjct: 434 LNKADAADPFVLERMRQREPEHVIVSARTGEGIEELKQKIADTIPRPSIEVKLLIPYSH 492 >gi|261224229|ref|ZP_05938510.1| hypothetical protein EscherichiacoliO157_06435 [Escherichia coli O157:H7 str. FRIK2000] Length = 204 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/108 (36%), Positives = 56/108 (51%), Gaps = 4/108 (3%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L +S HI + L ++ + I I+G S AGKSSL NAL + V V+D+ TR+V Sbjct: 17 LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGVVTPVSDVHAGTREVR 75 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305 L G+ + I+D G+ E+ D E E + R L DL+L L Sbjct: 76 RFRLSGHGHSMVITDLPGVGESRDRDAESEALYRDIL--PELDLVLWL 121 >gi|222100001|ref|YP_002534569.1| GTP-binding protein engB [Thermotoga neapolitana DSM 4359] gi|254783217|sp|B9K8C0|ENGB_THENN RecName: Full=Probable GTP-binding protein EngB gi|221572392|gb|ACM23204.1| GTP-binding protein engB [Thermotoga neapolitana DSM 4359] Length = 195 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 49/177 (27%), Positives = 76/177 (42%), Gaps = 46/177 (25%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV-------LTIDLDLEGY-LVKISD 273 + +G SN GKSSL NAL + +A V+ PG TR + +DL GY K+S Sbjct: 26 VAFVGRSNVGKSSLLNALFNRKIAYVSKTPGKTRSINFYLVNSRYYFVDLPGYGYAKVSK 85 Query: 274 TAGIRET----DDIVEKEGIKRTFLEV------ENADLILL--LKEINSKKEISFPKNID 321 ++ D + ++ FL V + DL+++ LK + N+ Sbjct: 86 KERVQWKKLVEDYFTNRWSLQMVFLLVDGRIPPQETDLMMVEWLKSL----------NVP 135 Query: 322 FIFIGTKSD----------------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362 F + TK D +S Y E SS TGEG+++L+N I ++L Sbjct: 136 FTIVLTKMDKVKMSERKKKLDEHKKAFSKYGEYTIIPTSSVTGEGIDDLLNLISTLL 192 >gi|73667142|ref|YP_303158.1| GTP-binding protein EngA [Ehrlichia canis str. Jake] gi|72394283|gb|AAZ68560.1| Small GTP-binding protein domain:GTP-binding domain [Ehrlichia canis str. Jake] Length = 439 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/60 (43%), Positives = 35/60 (58%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI I+G N GKS++FN L + AIV++ P TRD + DL G K+ DT G+ T Sbjct: 3 KIAIVGLPNVGKSTIFNRLTNQKSAIVSNTPNLTRDRREGNADLCGLKFKVIDTGGVDNT 62 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/88 (29%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G NAGKS+ N+L + IV+ GTTRD + I+ + + + DTAG+R+ Sbjct: 175 RLSIVGRPNAGKSTFVNSLLGESRMIVSPEAGTTRDSIDIEYQYKDQMFTLIDTAGMRKK 234 Query: 281 DDIVEK---EGIKRTFLEVENADLILLL 305 ++E+ + +T + +D+++L+ Sbjct: 235 AKVIEEIEVSSVHKTIGSINRSDIVVLV 262 >gi|23011471|ref|ZP_00051819.1| COG1160: Predicted GTPases [Magnetospirillum magnetotacticum MS-1] Length = 481 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 60/114 (52%), Gaps = 8/114 (7%) Query: 198 FLKNDISSHISQGKLGEIIRNG-YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 L +++ ++ + GE+ G ++ ++G N GKSSL N LA D +V +I GTTRD Sbjct: 228 LLDAAMAALPTESEHGEVRPTGPRRVALVGRPNVGKSSLLNKLAGADRVVVDEIAGTTRD 287 Query: 257 VLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIK-----RTFLEVENADLILLL 305 + + ++ + DTAGIR + + +G RT +E A+L ++L Sbjct: 288 PVDELVTIKDVPYVLVDTAGIRRR--VHQTKGADFYASLRTQAAIEKAELAVVL 339 Score = 43.1 bits (100), Expect = 0.086, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 30/55 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 + ++G N GKS+L N + + A+V D PG TRD ++ D G + DT G Sbjct: 79 LAVVGRPNVGKSTLVNRILGRREAVVEDKPGVTRDRVSYPADWSGRRFTLVDTGG 133 >gi|163760113|ref|ZP_02167196.1| GTP-binding protein [Hoeflea phototrophica DFL-43] gi|162282512|gb|EDQ32800.1| GTP-binding protein [Hoeflea phototrophica DFL-43] Length = 413 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 27/171 (15%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280 + ++G++NAGKS+LFN + +V + D+ T D + L G V +SDT G + Sbjct: 175 VALVGYTNAGKSTLFNRVTGAEV-LAEDMLFATLDPTLRRMKLPHGNTVILSDTVGFISS 233 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF---------------I 325 + T EV ADLIL ++++ S +++ I + Sbjct: 234 LPTHLVAAFRATLEEVVEADLILHVRDMADPDRASQAGDVEEILKSLGLNEGDGRKLVEV 293 Query: 326 GTKSDLYS--------TYTEEYDHLI--SSFTGEGLEELINKIKSILSNKF 366 K DL S T E+ ++ I SS TGEG++EL+ +I++I+S K Sbjct: 294 WNKIDLLSEEAAEDLKTRAEKSENAIAVSSVTGEGIDELLMRIETIISGKL 344 >gi|91210166|ref|YP_540152.1| hypothetical protein UTI89_C1138 [Escherichia coli UTI89] gi|91071740|gb|ABE06621.1| hypothetical protein UTI89_C1138 [Escherichia coli UTI89] gi|294493231|gb|ADE91987.1| putative GTPase [Escherichia coli IHE3034] gi|307627510|gb|ADN71814.1| hypothetical protein UM146_12225 [Escherichia coli UM146] Length = 290 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L +S HI + L ++ + I I+G S AGKSSL NAL + +V V+D+ TR+V Sbjct: 17 LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 75 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305 L G+ + I+D G+ E+ D E E + R L DL+L L Sbjct: 76 RFRLSGHGHNMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 121 >gi|88607492|ref|YP_504995.1| GTP-binding protein EngA [Anaplasma phagocytophilum HZ] gi|88598555|gb|ABD44025.1| putative GTP-binding protein EngA [Anaplasma phagocytophilum HZ] Length = 440 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 5/87 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKS+LFN L ++ AIV+DI TRD +D G DT G+ + Sbjct: 3 KVAIVGLPNVGKSTLFNRLTRRKSAIVSDIAHVTRDRKEALVDFCGLRFIAIDTGGVADG 62 Query: 281 DDIVEKEGIKRT--FLEVENADLILLL 305 +I + + +T L +ENAD++L + Sbjct: 63 GEI---QSLVKTQVQLALENADVVLFV 86 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 39/64 (60%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS+ N++ ++ I + I GTTRD ++ + +G + ++DTAGIR+ Sbjct: 177 ISIIGQPNVGKSTFVNSILGEERVITSGIAGTTRDSISAEYSYKGITLLLTDTAGIRKRT 236 Query: 282 DIVE 285 + E Sbjct: 237 KVTE 240 >gi|289578133|ref|YP_003476760.1| GTP-binding protein Era [Thermoanaerobacter italicus Ab9] gi|289527846|gb|ADD02198.1| GTP-binding protein Era [Thermoanaerobacter italicus Ab9] Length = 302 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 54/98 (55%), Gaps = 9/98 (9%) Query: 219 GYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 GYK + ++G +N GKS+L NA+ ++ +AI + P TTR+ + L + Y V DT Sbjct: 2 GYKAGFVALIGRTNVGKSTLLNAILQEKIAITSPKPQTTRNTIRGILTTDEYQVIFVDTP 61 Query: 276 GIRETDDIVEK---EGIKRTFLEVENADLILLLKEINS 310 GI + + + E KRT EV DLIL + E ++ Sbjct: 62 GIHKPKSKLSEFMIEVAKRTLKEV---DLILYMIEPDT 96 >gi|240146464|ref|ZP_04745065.1| GTP-binding protein [Roseburia intestinalis L1-82] gi|257201399|gb|EEU99683.1| GTP-binding protein [Roseburia intestinalis L1-82] Length = 427 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 53/90 (58%), Gaps = 4/90 (4%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDTA 275 N I + G +N+GKSS NA ++V+IV D+ GTT D + +++ G V I DTA Sbjct: 12 NRLHIGVFGKTNSGKSSFINAFTHQEVSIVADVAGTTTDPVYKPMEISPLGPCV-IIDTA 70 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLL 305 G + ++ E+ +++T L E AD+ +++ Sbjct: 71 GFDDETELGERR-VEKTKLAAEKADIAVIV 99 >gi|322379042|ref|ZP_08053445.1| iron(II) transport protein [Helicobacter suis HS1] gi|321148534|gb|EFX43031.1| iron(II) transport protein [Helicobacter suis HS1] Length = 710 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKSSL NA++ + V + G T + I + GY + I D GI + Sbjct: 6 VALVGQPNVGKSSLINAVSGAHLK-VGNFAGVTVEKTEISVVYGGYTINIIDLPGIYALN 64 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 D +E I + FL+ E+ DLIL Sbjct: 65 DFTIEEKITKRFLDHESYDLIL 86 >gi|313837272|gb|EFS74986.1| GTP-binding protein Era [Propionibacterium acnes HL037PA2] gi|314928053|gb|EFS91884.1| GTP-binding protein Era [Propionibacterium acnes HL044PA1] gi|314972043|gb|EFT16141.1| GTP-binding protein Era [Propionibacterium acnes HL037PA3] Length = 341 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 59/257 (22%), Positives = 106/257 (41%), Gaps = 39/257 (15%) Query: 210 GKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266 ++ E R G+ + +G NAGKS+L NAL +AI + P TTR V+ + E Sbjct: 29 ARVAESTRAGFHSGFVCFVGRPNAGKSTLTNALVGSKIAIASSKPQTTRHVIRGVVTGEK 88 Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEIS-F 316 + + DT G+ + ++ + F D+I + N + +I+ F Sbjct: 89 SQIVVIDTPGLHKPRTLLGQRLNDLVFDTWTQVDVIGVCLPSNQRIGPGDTYLVSQIADF 148 Query: 317 PKNIDFIFIGTKSDLYSTYTEEYDHLI-------------------SSFTGEGLEELINK 357 P+ I + TKSDL S +HL+ S+ +GE ++E+ + Sbjct: 149 PRRPTLIALATKSDLVSK-ARMAEHLVAIGKLQEEVGIEFAEIIPCSAVSGEQVDEVRDA 207 Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLG 417 I S+L P + + +++ +R + + E+ + +L + V +G Sbjct: 208 IVSLLPEGPAYYPDGEVTDEPTDTLVAELIREAALEGVREE------LPHSLAVEIVEMG 261 Query: 418 KITGCVDVEQLLDIIFS 434 G D LLD+ S Sbjct: 262 LREGQPDDHPLLDVYAS 278 >gi|301058126|ref|ZP_07199178.1| GTP-binding protein Era [delta proteobacterium NaphS2] gi|300447758|gb|EFK11471.1| GTP-binding protein Era [delta proteobacterium NaphS2] Length = 294 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 47/212 (22%), Positives = 86/212 (40%), Gaps = 32/212 (15%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS+L N + +AIV+ P TTR+ + + DT GI T Sbjct: 8 IGIVGPPNVGKSTLLNRIMGTKLAIVSPKPQTTRNRILGVFHQHDCQMVFMDTPGIHRTR 67 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKS------------ 329 + K + F D+IL++ E + ++ + P I G KS Sbjct: 68 TALHKSMVDAAFAAFHEVDMILMMVEADPRENPAVPS----IIRGLKSIAKPRFLAINKI 123 Query: 330 ---------DLYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376 L + Y + D IS+ G G++ L+ ++K L + P + + Sbjct: 124 DRVKKEHILPLLADYGRKLDFDAIIPISALKGNGVDTLLQELKRRLKPGPQFFPEDMDTD 183 Query: 377 KRHLYHLSQTVR---YLEMASLNEKDCGLDII 405 + + +++ +R Y +++ C + +I Sbjct: 184 QSEAFMVAEIIREKIYEQLSQELPYSCAVTVI 215 >gi|291538377|emb|CBL11488.1| iron-only hydrogenase maturation protein HydF [Roseburia intestinalis XB6B4] Length = 427 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 53/90 (58%), Gaps = 4/90 (4%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDTA 275 N I + G +N+GKSS NA ++V+IV D+ GTT D + +++ G V I DTA Sbjct: 12 NRLHIGVFGKTNSGKSSFINAFTHQEVSIVADVAGTTTDPVYKPMEISPLGPCV-IIDTA 70 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLL 305 G + ++ E+ +++T L E AD+ +++ Sbjct: 71 GFDDETELGERR-VEKTKLAAEKADIAVIV 99 >gi|227485371|ref|ZP_03915687.1| GTP-binding protein, GTPase [Anaerococcus lactolyticus ATCC 51172] gi|227236662|gb|EEI86677.1| GTP-binding protein, GTPase [Anaerococcus lactolyticus ATCC 51172] Length = 385 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 46/148 (31%), Positives = 73/148 (49%), Gaps = 14/148 (9%) Query: 205 SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL 264 + IS+ L E + G I G +N+GKS+L N L +D AIV+ I GTT D + +++ Sbjct: 2 TSISKTSLSERVYIG----IFGKTNSGKSTLLNYLTGQDAAIVSPIEGTTTDPIRKAMEI 57 Query: 265 EGY-LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNID-- 321 + V DTAG + + KE ++T E++ D+ L + EI PK D Sbjct: 58 TDFGPVVFIDTAGTADETQL-GKERYEKTLAEIDKVDVFLYVLSSGDDLEI-IPKFKDKP 115 Query: 322 FIFIGTKSDLYSTYTEEYDHLISSFTGE 349 I++ K D T E ++ +F G+ Sbjct: 116 VIYMAMKVD-----TGEGSQILKAFAGK 138 >gi|110643162|ref|YP_670892.1| hypothetical protein ECP_3008 [Escherichia coli 536] gi|191171808|ref|ZP_03033354.1| putative GTPase [Escherichia coli F11] gi|110344754|gb|ABG70991.1| hypothetical protein ECP_3008 [Escherichia coli 536] gi|190907843|gb|EDV67436.1| putative GTPase [Escherichia coli F11] Length = 290 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L +S HI + L ++ + I I+G S AGKSSL NAL + +V V+D+ TR+V Sbjct: 17 LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 75 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305 L G+ + I+D G+ E+ D E E + R L DL+L L Sbjct: 76 RFRLSGHGHNMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 121 >gi|46578469|ref|YP_009277.1| GTP-binding protein Era [Desulfovibrio vulgaris str. Hildenborough] gi|120603947|ref|YP_968347.1| GTP-binding protein Era [Desulfovibrio vulgaris DP4] gi|81567485|sp|Q72G11|ERA_DESVH RecName: Full=GTPase Era gi|189037267|sp|A1VHK4|ERA_DESVV RecName: Full=GTPase Era gi|46447880|gb|AAS94536.1| GTP-binding protein Era [Desulfovibrio vulgaris str. Hildenborough] gi|120564176|gb|ABM29920.1| GTP-binding protein Era [Desulfovibrio vulgaris DP4] gi|311232397|gb|ADP85251.1| GTP-binding protein Era [Desulfovibrio vulgaris RCH1] Length = 308 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 1/89 (1%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R G+ + ++G NAGKS+L NAL + VAIVT P TTR+ + L + V DT G Sbjct: 7 RCGW-VALIGPPNAGKSTLLNALIGQKVAIVTSKPQTTRNQIVGILSRKDAQVVFMDTPG 65 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL 305 I + + K ++ + + AD ++++ Sbjct: 66 IHQLRGRLNKMLLQTAWQSMNAADALIVM 94 >gi|296273943|ref|YP_003656574.1| GTP-binding protein Era [Arcobacter nitrofigilis DSM 7299] gi|296098117|gb|ADG94067.1| GTP-binding protein Era [Arcobacter nitrofigilis DSM 7299] Length = 293 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 51/181 (28%), Positives = 79/181 (43%), Gaps = 27/181 (14%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 GY + ++G NAGKSSL N L + +A+V+ TR I + E V DT GI Sbjct: 5 GY-VSVVGRPNAGKSSLLNWLVGEKIAMVSHKANATRKRSNIIVMHEDDQVIFVDTPGIH 63 Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNIDFIFIGTKSDLY 332 ET+ ++ + + + + DLIL L + + + + KN I + TK D Sbjct: 64 ETEKLLNQFMLDEALKAMGDCDLILFLAPVTDQVKYYEEFLLKNKKNTKHILLLTKIDFV 123 Query: 333 STYTEEYDHLISSFTGEGLEELINKIKSI--LSNKFKK-LPFSIPSHKRHLYHLSQTVRY 389 S EE++ K+K S+K++ +P SI H L V+Y Sbjct: 124 SN-----------------EEVLAKMKEYEKFSDKYESIIPVSIKKATTHADILDVVVKY 166 Query: 390 L 390 L Sbjct: 167 L 167 >gi|293406034|ref|ZP_06650024.1| conserved hypothetical protein [Escherichia coli FVEC1412] gi|291426887|gb|EFE99915.1| conserved hypothetical protein [Escherichia coli FVEC1412] Length = 137 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L +S HI + L ++ + I I+G S AGKSSL NAL + +V V+D+ TR+V Sbjct: 17 LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVLAGTREVQ 75 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305 L G+ + I+D G+ E+ D E E + R L DL+L L Sbjct: 76 RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 121 >gi|88809126|ref|ZP_01124635.1| hypothetical protein WH7805_05521 [Synechococcus sp. WH 7805] gi|88787068|gb|EAR18226.1| hypothetical protein WH7805_05521 [Synechococcus sp. WH 7805] Length = 312 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 41/195 (21%), Positives = 82/195 (42%), Gaps = 24/195 (12%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R+G+ + ++G N GKS+L N L VAI + + TTR+ L L + + DT G Sbjct: 11 RSGF-VALIGRPNVGKSTLVNQLVGDKVAITSPVAQTTRNRLRAILTTAEAQLILVDTPG 69 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKE------------INSKKEISFPKNI---- 320 I + ++ + ++ + D +LLL E +N ++ P + Sbjct: 70 IHKPHHLLGERLVQSARSAIGEVDQVLLLLEGCEPPGRGDAFIVNLLRQQRLPVQVVLNK 129 Query: 321 -DFIFIGTKSDLYSTYTEEYD------HLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373 D + + + + Y + H + TGEG EL+ + +++ + P + Sbjct: 130 WDQVPTARRPEADAAYRDLLAESGWPIHHCCALTGEGCPELVRAVSALMPEGPQLYPADM 189 Query: 374 PSHKRHLYHLSQTVR 388 S + +++ +R Sbjct: 190 VSDQPERLLMAELIR 204 >gi|293406540|ref|ZP_06650466.1| GTPase [Escherichia coli FVEC1412] gi|298382279|ref|ZP_06991876.1| yeeP protein [Escherichia coli FVEC1302] gi|291426546|gb|EFE99578.1| GTPase [Escherichia coli FVEC1412] gi|298277419|gb|EFI18935.1| yeeP protein [Escherichia coli FVEC1302] Length = 290 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 4/108 (3%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L +S HI + L ++ + I I+G S AGKSSL NAL + +V V+D+ TR+V Sbjct: 17 LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVLAGTREVQ 75 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305 L G+ + I+D G+ E+ D E E + R L DL+L L Sbjct: 76 RFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 121 >gi|260845837|ref|YP_003223615.1| hypothetical protein ECO103_3763 [Escherichia coli O103:H2 str. 12009] gi|257760984|dbj|BAI32481.1| hypothetical protein ECO103_3763 [Escherichia coli O103:H2 str. 12009] Length = 290 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/108 (36%), Positives = 56/108 (51%), Gaps = 4/108 (3%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L +S HI + L ++ + I I+G S AGKSSL NAL + +V V+D+ TR V Sbjct: 17 LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTRKVR 75 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305 L G+ + I+D G+ E+ D E E + R L DL+L L Sbjct: 76 CFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 121 >gi|302388761|ref|YP_003824582.1| small GTP-binding protein [Thermosediminibacter oceani DSM 16646] gi|302199389|gb|ADL06959.1| small GTP-binding protein [Thermosediminibacter oceani DSM 16646] Length = 196 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 1/83 (1%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+V++G N GKS +FN L V V++ PGTT ++ + G + +I DT G+ Sbjct: 33 KLVLVGTPNVGKSVIFNRLTGAYVT-VSNYPGTTVEIFRGTGRIGGEIFEIIDTPGMYSL 91 Query: 281 DDIVEKEGIKRTFLEVENADLIL 303 I E+E + RT L EN D+++ Sbjct: 92 MPITEEERVTRTLLFNENFDIVV 114 >gi|322421095|ref|YP_004200318.1| ribosome-associated GTPase EngA [Geobacter sp. M18] gi|320127482|gb|ADW15042.1| ribosome-associated GTPase EngA [Geobacter sp. M18] Length = 440 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 7/88 (7%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD---VLTIDLDLEGYLVKISDTAGIR 278 I I+G N GKS+LFN L + A+V D+PG TRD DL LV DT G Sbjct: 5 IAIVGRPNVGKSTLFNRLVGRRKAMVDDMPGVTRDRNYAEVTRFDLPFILV---DTGGFE 61 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305 ET D + ++ +++ ++ ADLIL + Sbjct: 62 PETSDKLLQQMREQSRFAMDEADLILFV 89 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 +I ++G N GKS+L N L + + GTTRD + + + DTAGIR Sbjct: 177 RIAVVGRPNVGKSTLVNRLLGYERVVANPTAGTTRDAVDTRFTVNKKPYLLIDTAGIRRK 236 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305 +T VEK + +E AD++L++ Sbjct: 237 GKTVQKVEKYSVMDALRSIERADVVLIV 264 >gi|328907177|gb|EGG26943.1| GTP-binding protein Era [Propionibacterium sp. P08] Length = 340 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 59/257 (22%), Positives = 106/257 (41%), Gaps = 39/257 (15%) Query: 210 GKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266 ++ E R G+ + +G NAGKS+L NAL +AI + P TTR V+ + E Sbjct: 28 ARVAESTRAGFHSGFVCFVGRPNAGKSTLTNALVGSKIAIASSKPQTTRHVIRGVVTGEK 87 Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEIS-F 316 + + DT G+ + ++ + F D+I + N + +I+ F Sbjct: 88 SQIVVIDTPGLHKPRTLLGQRLNDLVFDTWTQVDVIGVCLPSNQRIGPGDTYLVSQIADF 147 Query: 317 PKNIDFIFIGTKSDLYSTYTEEYDHLI-------------------SSFTGEGLEELINK 357 P+ I + TKSDL S +HL+ S+ +GE ++E+ + Sbjct: 148 PRRPTLIALATKSDLVSK-ARMAEHLVAIGKLQEEVGIEFAEIIPCSAVSGEQVDEVRDA 206 Query: 358 IKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLG 417 I S+L P + + +++ +R + + E+ + +L + V +G Sbjct: 207 IVSLLPEGPAYYPDGEVTDEPTDTLVAELIREAALEGVREE------LPHSLAVEIVEMG 260 Query: 418 KITGCVDVEQLLDIIFS 434 G D LLD+ S Sbjct: 261 LREGQPDDHPLLDVYAS 277 >gi|323952506|gb|EGB48379.1| hypothetical protein ERKG_01457 [Escherichia coli H252] Length = 290 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 3/83 (3%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 I+G S AGKSSL NAL + ++ V+D+ TR+V L+ G+ + I+D G+ E+ D Sbjct: 41 IMGKSGAGKSSLCNALFQGEITPVSDVHAGTREVQRFRLNGHGHSMVITDLPGVGESRDR 100 Query: 284 -VEKEGIKRTFLEVENADLILLL 305 E E + R L DL+L L Sbjct: 101 DAEYEALYRDIL--PELDLVLWL 121 >gi|319892329|ref|YP_004149204.1| GTP-binding protein HflX [Staphylococcus pseudintermedius HKU10-03] gi|317162025|gb|ADV05568.1| GTP-binding protein HflX [Staphylococcus pseudintermedius HKU10-03] gi|323464572|gb|ADX76725.1| GTP-binding protein, putative [Staphylococcus pseudintermedius ED99] Length = 410 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 50/184 (27%), Positives = 83/184 (45%), Gaps = 19/184 (10%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIR 278 +++ ++G++NAGKSS FN L D D+ T D + L + +G+ + ISDT G Sbjct: 205 FQVALIGYTNAGKSSWFNTLTAADT-YEQDLLFATLDPKSRQLKINDGFEMVISDTVGFI 263 Query: 279 ETDDIVEKEGIKRTFLEVENADLIL-LLKEINSKKEISFP-----------KNIDFIFIG 326 + E K T E ADL++ ++ +++ +I + ++I + I Sbjct: 264 QKLPTTLIEAFKSTLEEARQADLLIHVVDASHAEYKIQYDTVNEIVQELDMQDIPQVVIF 323 Query: 327 TKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL----SNKFKKLPFSIPSHKR-HLY 381 K DL++ T S F E I K+K++L +F +PS LY Sbjct: 324 NKKDLFTGTTTPVTQYPSVFVSSKNEADIEKVKNLLFQAIQKQFDFYTAQLPSSAADQLY 383 Query: 382 HLSQ 385 HL Q Sbjct: 384 HLKQ 387 >gi|253996056|ref|YP_003048120.1| ferrous iron transport protein B [Methylotenera mobilis JLW8] gi|253982735|gb|ACT47593.1| ferrous iron transport protein B [Methylotenera mobilis JLW8] Length = 596 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 3/92 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I +LG N GKS+LFN ++ A V + PG T D+L+ + L G +V++ D GI + Sbjct: 3 RIALLGMPNTGKSTLFNRISGAS-ARVGNWPGITVDLLSAKILLGGNIVELIDLPGIYDL 61 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKK 312 E E + R F+ +L+++L +NS + Sbjct: 62 HGFSEDEQVVRHFITNNPVNLLVVL--LNSTQ 91 >gi|153852706|ref|ZP_01994143.1| hypothetical protein DORLON_00125 [Dorea longicatena DSM 13814] gi|149754348|gb|EDM64279.1| hypothetical protein DORLON_00125 [Dorea longicatena DSM 13814] Length = 410 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 42/129 (32%), Positives = 70/129 (54%), Gaps = 16/129 (12%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGIRE 279 I I G NAGKSSL NAL +++AIV+D+ GTT D + +++L G +V I DT G+ + Sbjct: 14 IGIFGRRNAGKSSLINALTGQNLAIVSDVRGTTTDPVFKSMELLPLGPIVMI-DTPGLDD 72 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP----------KNIDFIFIGTKS 329 ++ K I++ + + D+ +L+ I+ I+ KNI + + K+ Sbjct: 73 EGEL-GKLRIQKAYQVLNKTDIAVLV--IDGTSGITPQDNAILTRIQDKNIPLLLVLNKA 129 Query: 330 DLYSTYTEE 338 DL S +T + Sbjct: 130 DLVSEHTHQ 138 >gi|297626315|ref|YP_003688078.1| GTP binding protein [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922080|emb|CBL56648.1| GTP binding protein [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 449 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 38/60 (63%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 +++ I+G N GKSSL N LA ++V+D+ GTT D + + + G ++ DTAGIR+ Sbjct: 188 HRVAIVGKPNVGKSSLLNRLASAQRSVVSDVSGTTVDPVDELVTIAGEPFRLIDTAGIRK 247 Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 10/89 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+L N + + A+V D PG TRD ++ D + G + DT G Sbjct: 16 VAVVGRPNVGKSTLVNRILGRREAVVQDTPGVTRDRVSYDANWAGREFVLVDTGGW---- 71 Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305 I + EG+ ++ + ++ AD +L + Sbjct: 72 -IAKAEGMSAHIAEQAEMAIQLADAVLFV 99 >gi|229918701|ref|YP_002887347.1| GTP-binding protein EngA [Exiguobacterium sp. AT1b] gi|229470130|gb|ACQ71902.1| small GTP-binding protein [Exiguobacterium sp. AT1b] Length = 436 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 49/85 (57%), Gaps = 3/85 (3%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 ++G N GKSSL N++ ++ IV++I GTTRD + +G I DTAG+R+ + Sbjct: 180 LIGRPNVGKSSLTNSILGEERVIVSNIAGTTRDAIDTPFTRDGQEYVIIDTAGMRKRGKV 239 Query: 284 ---VEKEGIKRTFLEVENADLILLL 305 E+ + R +E ++++L++ Sbjct: 240 YESTERYSVMRAQKAIERSNVVLVV 264 Score = 43.9 bits (102), Expect = 0.050, Method: Compositional matrix adjust. Identities = 28/94 (29%), Positives = 50/94 (53%), Gaps = 2/94 (2%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN + V+IV D PG TRD + + + DT GI D Sbjct: 6 VAIVGRPNIGKSTIFNRIIGDRVSIVDDKPGVTRDRIYGTGEWLNRKFHLIDTGGIEVGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + + + + L ++ AD+I+ + +N ++ I+ Sbjct: 66 EPLLVQMRHQAELAIDEADVIIFM--VNGREGIT 97 >gi|224024977|ref|ZP_03643343.1| hypothetical protein BACCOPRO_01708 [Bacteroides coprophilus DSM 18228] gi|224018213|gb|EEF76211.1| hypothetical protein BACCOPRO_01708 [Bacteroides coprophilus DSM 18228] Length = 397 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 66/120 (55%), Gaps = 8/120 (6%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI-SDTAG 276 N I + G N+GKSSL NAL ++ A+V+++ GTT D + +++ G + DTAG Sbjct: 11 NRIHIGLFGKRNSGKSSLINALTGQETALVSEVAGTTTDPVYKPMEIHGLGPCVFIDTAG 70 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFP---KNIDFIFIGTKSD 330 + + D+ I++T +E D+ LL+ ++I + E + KNI I++ ++D Sbjct: 71 LDDEGDLGALR-IRQTLKAMERTDIALLVCRDEQIGPEMEWAGQLKEKNIPTIWVLNQAD 129 >gi|319442278|ref|ZP_07991434.1| bifunctional cytidylate kinase/GTPase Der [Corynebacterium variabile DSM 44702] Length = 567 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 40/65 (61%) Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274 I+ ++ ++G N GKSSL N + +D ++V ++ GTT D + ++LE + + DT Sbjct: 298 IVAGPRRVALVGRPNVGKSSLLNKITGEDRSVVDNVAGTTVDPVDSVVELEQQMWRFVDT 357 Query: 275 AGIRE 279 AGIR+ Sbjct: 358 AGIRK 362 Score = 43.5 bits (101), Expect = 0.064, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 29/55 (52%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 + I+G N GKS+L N + A+V D PG TRD ++ D G + DT G Sbjct: 132 VAIVGRPNVGKSTLVNRFIGRREAVVEDFPGVTRDRISYIGDWGGRRFWVQDTGG 186 >gi|310658154|ref|YP_003935875.1| iron-only hydrogenase maturation protein [Clostridium sticklandii DSM 519] gi|308824932|emb|CBH20970.1| Iron-only hydrogenase maturation protein [Clostridium sticklandii] Length = 398 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/98 (37%), Positives = 54/98 (55%), Gaps = 12/98 (12%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276 N I I G NAGKSSL NA+ ++ V++V+DI GTT D + ++L Y V DTAG Sbjct: 8 NRTHIGIFGKRNAGKSSLLNAITEQKVSLVSDIGGTTTDPVKKAMELLPYGPVLFIDTAG 67 Query: 277 IRETDDI-----VEKEGIKRTFLEVENADLILLLKEIN 309 + DD+ + K K F ++ D L++ +IN Sbjct: 68 L---DDVGVLGELRKNRAKEMFTQI---DFALIVHDIN 99 >gi|157737929|ref|YP_001490613.1| GTP-binding protein Era [Arcobacter butzleri RM4018] gi|157699783|gb|ABV67943.1| GTP-binding protein Era-like protein [Arcobacter butzleri RM4018] Length = 294 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 68/149 (45%), Gaps = 23/149 (15%) Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274 + + GY + ++G NAGKSSL N L + +A+V+ TR I + E V DT Sbjct: 1 MTKCGY-VSVVGRPNAGKSSLLNWLVGEKIAMVSHKANATRKRSNIIVMHEDDQVIFIDT 59 Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF--------PKNIDFIFIG 326 GI ET+ ++ + + + + DLIL L + K IS+ KN+ I + Sbjct: 60 PGIHETEKLLNQYMLDEALKAMGDCDLILYLAPVTDK--ISYYEDFLEKNKKNVKHILLL 117 Query: 327 TKSDL------------YSTYTEEYDHLI 343 TK D Y Y ++Y+ +I Sbjct: 118 TKIDFVSADELMLKLKEYEKYNDKYEAII 146 >gi|170683175|ref|YP_001743150.1| putative GTPase [Escherichia coli SMS-3-5] gi|170520893|gb|ACB19071.1| putative GTPase [Escherichia coli SMS-3-5] Length = 290 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 3/83 (3%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 I+G S AGKSSL NAL + ++ V+D+ TR+V L+ G+ + I+D G+ E+ D Sbjct: 41 IMGKSGAGKSSLCNALFQGEITPVSDVHAGTREVQRFRLNGHGHSMVITDLPGVGESRDR 100 Query: 284 -VEKEGIKRTFLEVENADLILLL 305 E E + R L DL+L L Sbjct: 101 DAEYEALYRDIL--PELDLVLWL 121 >gi|319949180|ref|ZP_08023269.1| GTP-binding protein Der [Dietzia cinnamea P4] gi|319437166|gb|EFV92197.1| GTP-binding protein Der [Dietzia cinnamea P4] Length = 488 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 49/192 (25%), Positives = 88/192 (45%), Gaps = 30/192 (15%) Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267 S+ ++ E ++ ++G N GKSSL N L +D A+V ++ GTT D + ++L G Sbjct: 214 SKARMREAADVPRRVALVGKPNVGKSSLLNKLTGEDRAVVDNVAGTTVDPVDSLVELGGR 273 Query: 268 LVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLL---KEINSKKE-------- 313 + DTAG+R + E RT +E A++++LL E ++++ Sbjct: 274 TWRFVDTAGLRRKVNQAYGHEYYASLRTRGAIEAAEVVVLLLDASEPITEQDLRVISMVA 333 Query: 314 -------ISFPKNIDFIFIGTKSDLYSTYTEEYDHL--------ISSFTGEGLEELINKI 358 I+F K D + + DL E + IS+ TG L +L+ + Sbjct: 334 DAGRALVIAFNK-WDLVDEDRRYDLDKEIDRELSRVLSWAHRVNISAKTGRALAKLVPAM 392 Query: 359 KSILSNKFKKLP 370 ++ L + K++P Sbjct: 393 ETALDSWDKRIP 404 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 45/84 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+L N + + A+V D+PG TRD ++ + G + DT G + Sbjct: 55 VAIVGRPNVGKSTLVNRIIGRREAVVEDVPGVTRDRVSYEALWNGRTFMVQDTGGWEQDA 114 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + ++ + + ADLI+L+ Sbjct: 115 KGMHRSIAQQAEIAMGTADLIVLV 138 >gi|315637675|ref|ZP_07892880.1| GTP-binding protein Era [Arcobacter butzleri JV22] gi|315478022|gb|EFU68750.1| GTP-binding protein Era [Arcobacter butzleri JV22] Length = 294 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 43/145 (29%), Positives = 66/145 (45%), Gaps = 23/145 (15%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 GY + ++G NAGKSSL N L + +A+V+ TR I + E V DT GI Sbjct: 5 GY-VSVVGRPNAGKSSLLNWLVGEKIAMVSHKANATRKRSNIIVMHEDDQVIFIDTPGIH 63 Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF--------PKNIDFIFIGTKSD 330 ET+ ++ + + + + DLIL L + K IS+ KN+ I + TK D Sbjct: 64 ETEKLLNQYMLDEALKAMGDCDLILYLAPVTDK--ISYYEDFLEKNKKNVKHILLLTKID 121 Query: 331 L------------YSTYTEEYDHLI 343 Y Y ++Y+ +I Sbjct: 122 FVSADELMLKLKEYEKYNDKYEAII 146 >gi|225850861|ref|YP_002731095.1| ribosome biogenesis GTP-binding protein YsxC [Persephonella marina EX-H1] gi|225646661|gb|ACO04847.1| ribosome biogenesis GTP-binding protein YsxC [Persephonella marina EX-H1] Length = 203 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 43/156 (27%), Positives = 76/156 (48%), Gaps = 30/156 (19%) Query: 192 VLNDILFLKNDISSH-ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250 V+ + F+K+ ++ Q K E+ ++G SN GKSSL NA+ K+++A V+ Sbjct: 3 VIKKVQFIKSAVNPKDYPQPKYPEV-------AVVGRSNVGKSSLINAIFKRNIAKVSSS 55 Query: 251 PGTTR--------DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 PG TR D ++ +DL GY A + + + K+ I++ F EN L+ Sbjct: 56 PGKTRLINFFLLNDRISF-VDLPGY-----GYAAVSKAERAKWKKMIEKYFQTRENLSLV 109 Query: 303 LLL---KEINSKKEISFPK-----NIDFIFIGTKSD 330 ++L + +K +I + I +I + TK+D Sbjct: 110 IMLVDSRHPPTKLDIMMKEWLEDLGIPYIVVATKAD 145 >gi|148380897|ref|YP_001255438.1| GTP-binding protein Era [Clostridium botulinum A str. ATCC 3502] gi|153932263|ref|YP_001385205.1| GTP-binding protein Era [Clostridium botulinum A str. ATCC 19397] gi|153936986|ref|YP_001388674.1| GTP-binding protein Era [Clostridium botulinum A str. Hall] gi|226741172|sp|A7FXK1|ERA_CLOB1 RecName: Full=GTPase Era gi|226741199|sp|A5I626|ERA_CLOBH RecName: Full=GTPase Era gi|148290381|emb|CAL84508.1| GTP-binding protein [Clostridium botulinum A str. ATCC 3502] gi|152928307|gb|ABS33807.1| GTP-binding protein Era [Clostridium botulinum A str. ATCC 19397] gi|152932900|gb|ABS38399.1| GTP-binding protein Era [Clostridium botulinum A str. Hall] Length = 296 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 52/91 (57%), Gaps = 1/91 (1%) Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274 + ++G+ + I+G N GKS+L NA+ K+ ++IV+ P TTR+ + L + Y + DT Sbjct: 1 MFKSGF-VTIVGRPNVGKSTLLNAIMKEKLSIVSCRPQTTRNNIQTILTEDNYQLVFVDT 59 Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLL 305 GI + + + +K +++ DL+L L Sbjct: 60 PGIHKPKHKLGEYMVKSASEAMKDVDLVLFL 90 >gi|300819090|ref|ZP_07099293.1| conserved hypothetical protein [Escherichia coli MS 107-1] gi|300528390|gb|EFK49452.1| conserved hypothetical protein [Escherichia coli MS 107-1] Length = 290 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/91 (37%), Positives = 50/91 (54%), Gaps = 3/91 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G S AGKSSL NAL + +V V+D+ TR+V L G+ + I+D G+ E+ Sbjct: 39 IGIMGKSGAGKSSLCNALFQGEVTPVSDVYAGTREVQRFRLSGHGHSMVITDLPGVGESR 98 Query: 282 DI-VEKEGIKRTFLEVENADLILLLKEINSK 311 D E E + R L DL+L L + + + Sbjct: 99 DRDAEYEALYRDIL--PELDLVLWLIKADDR 127 >gi|111221687|ref|YP_712481.1| GTP-binding protein EngA [Frankia alni ACN14a] gi|111149219|emb|CAJ60904.1| GTP-binding protein [Frankia alni ACN14a] Length = 502 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/166 (20%), Positives = 70/166 (42%), Gaps = 19/166 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+L N + + A+V D+PG TRD + D G + DT G Sbjct: 64 VAVVGRPNVGKSTLVNRILGRRAAVVEDVPGVTRDRIAYDAVWNGRRFTLVDTGGWEPDA 123 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSD--- 330 + + ++ ++ AD +L + ++ + + + I + K D Sbjct: 124 SGLAAQVSEQASAALDTADAVLFIVDVTTGATDADEAVARVLHRSGLPVILVANKVDDNR 183 Query: 331 -------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369 L+ E H +S+ G G +L++ + ++L +++ Sbjct: 184 FESDAAALWGLGLGE-PHPVSALHGRGSGDLLDAVLAVLPEAPREV 228 Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 34/59 (57%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 ++ ++G N GKSSL N +A ++V D+ GTTRD + + + G DTAG+R Sbjct: 237 RVALIGRPNVGKSSLLNKIAGSRRSLVHDVAGTTRDPVDELVTVGGEEWMFIDTAGLRR 295 >gi|329850675|ref|ZP_08265520.1| GTP-binding protein HflX [Asticcacaulis biprosthecum C19] gi|328840990|gb|EGF90561.1| GTP-binding protein HflX [Asticcacaulis biprosthecum C19] Length = 441 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 50/189 (26%), Positives = 83/189 (43%), Gaps = 34/189 (17%) Query: 220 YKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGI 277 Y IV L G++NAGKS+LFN L + +V + D+ T D L L G +SDT G Sbjct: 210 YPIVALVGYTNAGKSTLFNHLTRAEV-VAKDLLFATLDTTLRTLKLPNGRSAMLSDTVGF 268 Query: 278 RETDDIVEK--EGIKRTFLEVENADLIL-----------------------LLKEINSKK 312 D+ + + T EVE ADLIL +L +++ + Sbjct: 269 --ISDLPHELVAAFRATLEEVEQADLILHVRDVSNPETEAQRQDVEQVLQHILPDLDRGR 326 Query: 313 EISFPKNIDFIFIGTKSDLYSTYTEEYDHL----ISSFTGEGLEELINKIKSILSNKFKK 368 ID + +K LY+ D +S+ TGEG+E L+ ++ +++ ++ Sbjct: 327 MFEVWNKIDLLDPDSKEVLYARSVTSRDAQKPLPVSAVTGEGIEALLARVANLVDADGEE 386 Query: 369 LPFSIPSHK 377 + + H+ Sbjct: 387 IDLVLEPHQ 395 >gi|163785853|ref|ZP_02180323.1| GTPase, MMR1/HSR1 family protein [Hydrogenivirga sp. 128-5-R1-1] gi|159878877|gb|EDP72911.1| GTPase, MMR1/HSR1 family protein [Hydrogenivirga sp. 128-5-R1-1] Length = 238 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 34/54 (62%), Gaps = 3/54 (5%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 +LG+ N GKSS+ N L KK VA V+ PG TR + I LD + +L+ DT GI Sbjct: 91 VLGYPNVGKSSVINTLKKKKVATVSPKPGMTRGEMLIKLDEDIFLI---DTPGI 141 >gi|254294018|ref|YP_003060041.1| GTP-binding proten HflX [Hirschia baltica ATCC 49814] gi|254042549|gb|ACT59344.1| GTP-binding proten HflX [Hirschia baltica ATCC 49814] Length = 445 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 56/198 (28%), Positives = 85/198 (42%), Gaps = 30/198 (15%) Query: 217 RNGYKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDT 274 R G IV L G++NAGKS+LFN+L V D+P T D D++L G + + DT Sbjct: 202 RRGAPIVALAGYTNAGKSTLFNSLTHSSV-FAADMPFATLDPTARDVELSSGKKISMIDT 260 Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNID------------- 321 G E + T E ADL+L +++I+ + +++ Sbjct: 261 VGFITDLPTHLIESFRATIEEAIEADLLLHVRDISHPETDRQSSDVNDVLTKLEQDLNAD 320 Query: 322 ---FIFIGTKSDLYS--------TYTEEYDH--LISSFTGEGLEELINKIKSILSNKFKK 368 I + KSD S T E D L S+ TGEGL++L+ ++ L ++ Sbjct: 321 RPPVIEVWNKSDALSDDVLTALKTTVENRDDIALTSATTGEGLDDLMQMVQDKLFASTRE 380 Query: 369 LPFSI-PSHKRHLYHLSQ 385 I P + R L Q Sbjct: 381 FELKIEPKYGRARSWLHQ 398 >gi|99034984|ref|ZP_01314786.1| hypothetical protein Wendoof_01000391 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 294 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 74/165 (44%), Gaps = 23/165 (13%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I G NAGKS+L N++ K +AIVT TTR + + +D+ GI + Sbjct: 9 VTIAGLPNAGKSTLINSIIGKKIAIVTPKVQTTRTQIRGVATCNNTQIVFTDSPGIFSAE 68 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI-NSKKEISFPKNI---------DFIFIGTKSDL 331 +EK +K + V+++D+ LLL ++ N K I K I I + K+DL Sbjct: 69 TKLEKALVKSAWSAVKDSDITLLLVDVSNYLKNIERIKTIFMRLQRTKGRCILVINKTDL 128 Query: 332 YST-------------YTEEYDHLISSFTGEGLEELINKIKSILS 363 Y E +IS+ +GL +L+N + + S Sbjct: 129 VKRPELKMAHEHLNLLYKFEKVFMISALKNDGLSDLMNYLSEVAS 173 >gi|170781664|ref|YP_001709996.1| GTP-binding protein EngA [Clavibacter michiganensis subsp. sepedonicus] gi|169156232|emb|CAQ01374.1| putative GTP binding protein [Clavibacter michiganensis subsp. sepedonicus] Length = 502 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 36/58 (62%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 ++ ILG N GKSSL N A ++ +V ++ GTTRD + +++ + + DTAGIR Sbjct: 243 RVAILGRPNVGKSSLLNKAAGEERVVVNELAGTTRDPVDEQVEIADKVWRFVDTAGIR 300 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 30/55 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 + ++G N GKS+L N + + A+V D PG TRD ++ + G + DT G Sbjct: 70 LAVVGRPNVGKSALINRILGRREAVVEDTPGVTRDRVSYKAEYAGRWFTLVDTGG 124 >gi|149002005|ref|ZP_01826959.1| phosphoglycerate dehydrogenase-related protein [Streptococcus pneumoniae SP14-BS69] gi|147759814|gb|EDK66804.1| phosphoglycerate dehydrogenase-related protein [Streptococcus pneumoniae SP14-BS69] Length = 92 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 27/85 (31%), Positives = 46/85 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS+LFN +A + ++IV D+ G TRD + + + DT GI + D Sbjct: 6 IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRSFSMIDTGGIDDVD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLK 306 ++ + + +E AD+I+ + Sbjct: 66 APFMEQIKHQAEIAMEEADVIVFCR 90 >gi|39939111|ref|NP_950877.1| GTP-binding protein Era [Onion yellows phytoplasma OY-M] gi|39722220|dbj|BAD04710.1| glycyl-tRNA synthetase [Onion yellows phytoplasma OY-M] Length = 295 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 2/85 (2%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRET 280 I ILG N GKS+L NAL ++ VAI + P TTR ++ I + + + DT GI + Sbjct: 12 IAILGRPNVGKSTLLNALTQQKVAITSAKPQTTRHKIIGICHEPNAQYIFV-DTPGINQY 70 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 ++ ++ F +++ DLIL L Sbjct: 71 KHLLNQKMNNIAFQSIKDVDLILFL 95 >gi|223985698|ref|ZP_03635745.1| hypothetical protein HOLDEFILI_03051 [Holdemania filiformis DSM 12042] gi|223962309|gb|EEF66774.1| hypothetical protein HOLDEFILI_03051 [Holdemania filiformis DSM 12042] Length = 298 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 45/177 (25%), Positives = 83/177 (46%), Gaps = 24/177 (13%) Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDT 274 +++G+ + ++G NAGKS+L NAL ++ VAI++ P TTR+ + I D + ++ + DT Sbjct: 1 MKSGF-VALIGRPNAGKSTLLNALVQQKVAIISPKPQTTRNSIRAIRTDADSQIIFV-DT 58 Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKE------------INSKKEISFP----- 317 GI + + + K + DLI L + +N+ +++ P Sbjct: 59 PGIHKPKHELGTQMNKEAYSAASGVDLIYYLVDGSVPFGSGDEFVLNTLRQMHLPVYLIL 118 Query: 318 KNIDFIFIGTKSDLYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLP 370 ID + DL + + D IS+ T L++LI K+ L++ + P Sbjct: 119 NKIDLLEKEQLIDLLLAWQQRMDFKEIIPISAKTQNNLDQLIEVTKNDLTDGVQYYP 175 >gi|257059220|ref|YP_003137108.1| small GTP-binding protein [Cyanothece sp. PCC 8802] gi|256589386|gb|ACV00273.1| small GTP-binding protein [Cyanothece sp. PCC 8802] Length = 531 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 67/242 (27%), Positives = 112/242 (46%), Gaps = 20/242 (8%) Query: 184 VQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 VQ K +L +I + +++G+L K+V+ G +AGK+SL NAL + Sbjct: 103 VQQIQDKVTQKALLNRSQEIEASLTRGEL--------KVVVFGTGSAGKTSLINALIGEM 154 Query: 244 VAIVTDIPGTTRDVLTIDLDLEGYL--VKISDTAGIRETD-DIVEKEGIKRTFLEVENAD 300 V V GTT+ T L L G + I+DT GI E + ++E + R AD Sbjct: 155 VGNVEATMGTTQIGETYRLKLRGVSQEILITDTPGILEAGVEGTQREKLARQL--ATEAD 212 Query: 301 LILLLKEINSKKEISFPKNIDFIFIGTKSDL----YSTYTEEYDHLISSFTGEGLEELIN 356 L+L + + + ++ P I IG +S L YTE+ LI E +++LI Sbjct: 213 LLLFVVDNDLRQSEYDPLQI-LAKIGKRSLLIFNKIDLYTEDEISLIKQQLQERVKDLIG 271 Query: 357 KIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSL 416 + IL + PF + + K + + ++ ++ + G D+IA+N+ L S L Sbjct: 272 ESDLILIAANPQ-PFEVETGK-IIKAEPDIIPLIKRLAVVLRAEGEDLIADNILLQSQRL 329 Query: 417 GK 418 G+ Sbjct: 330 GE 331 >gi|30693524|ref|NP_198812.2| GTP-binding family protein [Arabidopsis thaliana] Length = 616 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 11/94 (11%) Query: 191 EVLNDI-----LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 E+LNDI + ++S I + KL ++ I+G N GKS+L NAL +++ Sbjct: 285 EMLNDIGSQDDVLTDENLSDEIDESKLP------LQLAIVGKPNVGKSTLLNALLEEERV 338 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 +V G TRD + + + +G V + DTAG E Sbjct: 339 LVGPEAGLTRDAVRVQFEFQGRTVYLVDTAGWLE 372 >gi|332007113|gb|AED94496.1| GTP-binding protein [Arabidopsis thaliana] Length = 621 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 11/94 (11%) Query: 191 EVLNDI-----LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 E+LNDI + ++S I + KL ++ I+G N GKS+L NAL +++ Sbjct: 290 EMLNDIGSQDDVLTDENLSDEIDESKLP------LQLAIVGKPNVGKSTLLNALLEEERV 343 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 +V G TRD + + + +G V + DTAG E Sbjct: 344 LVGPEAGLTRDAVRVQFEFQGRTVYLVDTAGWLE 377 >gi|257064345|ref|YP_003144017.1| iron-only hydrogenase maturation protein HydF [Slackia heliotrinireducens DSM 20476] gi|256791998|gb|ACV22668.1| iron-only hydrogenase maturation protein HydF [Slackia heliotrinireducens DSM 20476] Length = 416 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/95 (35%), Positives = 58/95 (61%), Gaps = 8/95 (8%) Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVK 270 GE + G+ G NAGKSSL NA+ +++A+V+D PGTT D + ++L G +V Sbjct: 18 GERVHIGF----FGVRNAGKSSLVNAVTGQNLAVVSDTPGTTTDPVRKAMELLPVGPVV- 72 Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 I DT GI +T ++ E +++ +++AD+ +L+ Sbjct: 73 IVDTPGIDDTGELGELR-VEKARRAMDSADVAVLV 106 >gi|124805918|ref|XP_001350575.1| GTP binding protein, putative [Plasmodium falciparum 3D7] gi|23496699|gb|AAN36255.1| GTP binding protein, putative [Plasmodium falciparum 3D7] Length = 874 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 29/65 (44%), Positives = 42/65 (64%), Gaps = 3/65 (4%) Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKK--DVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272 IIRN I I+G N GKS++FN L +K D +IV D+ +TRD L +++ EGY ++ Sbjct: 304 IIRNLPLISIIGRPNVGKSTIFNRLTRKYQDGSIVLDV-SSTRDKLYGEVEWEGYKFELV 362 Query: 273 DTAGI 277 DT G+ Sbjct: 363 DTGGL 367 >gi|239816200|ref|YP_002945110.1| GTP-binding protein HSR1-related [Variovorax paradoxus S110] gi|239802777|gb|ACS19844.1| GTP-binding protein HSR1-related [Variovorax paradoxus S110] Length = 473 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 39/59 (66%), Gaps = 2/59 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKK-DVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGI 277 +I ++GH+NAGK+SL L ++ + V+ PGTTR V ++DL++ G V+ DT G+ Sbjct: 10 RIAVVGHTNAGKTSLLRTLTRRANFGEVSQRPGTTRHVESVDLEVNGQAAVRFFDTPGL 68 >gi|302527998|ref|ZP_07280340.1| ribosome-associated GTPase EngA [Streptomyces sp. AA4] gi|302436893|gb|EFL08709.1| ribosome-associated GTPase EngA [Streptomyces sp. AA4] Length = 493 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/175 (22%), Positives = 73/175 (41%), Gaps = 19/175 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+L N + + A+V D+PG TRD + D G + DT G Sbjct: 50 LAVVGRPNVGKSTLVNRILGRREAVVQDVPGVTRDRVAYDAFWAGRRFTLVDTGGWEPDA 109 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN----------------SKKEISFPKNI--DFI 323 ++ ++ + ++ AD +LL+ + SKK + N D Sbjct: 110 TGLQASVAQQAEMAMQTADAVLLVVDATVGATATDEAVARVLRRSKKPVLLAANKVDDDR 169 Query: 324 FIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378 + + L+S E H +S+ G +L++ I + L ++ + +R Sbjct: 170 LLADTASLWSLGLGE-PHPVSALHGRSSGDLLDSIMAALPEAPREAGTATAGPRR 223 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 28/88 (31%), Positives = 50/88 (56%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ ++G N GKSSL N L+ + ++V + GTT D + ++L+G + + DTAG+R+ Sbjct: 223 RVALVGKPNVGKSSLLNRLSGEQRSVVDSVAGTTVDPVDSLVELDGEIWRFVDTAGLRKR 282 Query: 281 ---DDIVEKEGIKRTFLEVENADLILLL 305 D E RT ++ A++ L+L Sbjct: 283 VNFADGAEYYASLRTKTAIDAAEVALVL 310 >gi|68067805|ref|XP_675836.1| GTP-binding protein [Plasmodium berghei strain ANKA] gi|56495245|emb|CAI00551.1| GTP-binding protein, putative [Plasmodium berghei] Length = 642 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/94 (34%), Positives = 53/94 (56%), Gaps = 3/94 (3%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKK--DVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 +IIRN + I+G N GKS++FN L +K + +IV D P +TRD + +GY ++ Sbjct: 57 KIIRNLPLVSIIGRPNVGKSTIFNRLTRKFQEGSIVLDKP-STRDKFYGKSEWDGYRFEV 115 Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 DT G+ D+ KE + L +E + ++L + Sbjct: 116 VDTGGLIFEDEKFSKEIRDQILLALEESSVVLFV 149 Score = 36.6 bits (83), Expect = 9.4, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 6/66 (9%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG----YLVKISD 273 N I +G N GKSS+ N + + IV+ I GTT D +ID+ ++G + ++ D Sbjct: 331 NTINISFIGKPNTGKSSILNKILNCNRFIVSPIAGTTID--SIDVLVKGKNDKRMYRLID 388 Query: 274 TAGIRE 279 TAGI++ Sbjct: 389 TAGIQK 394 >gi|296444864|ref|ZP_06886826.1| GTP-binding protein Era [Methylosinus trichosporium OB3b] gi|296257532|gb|EFH04597.1| GTP-binding protein Era [Methylosinus trichosporium OB3b] Length = 312 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 49/180 (27%), Positives = 87/180 (48%), Gaps = 28/180 (15%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-IDLDLEGYLVKISDTA 275 R G+ + ++G NAGKS+L N L V+IV+ TTR ++ I + E ++ + DT Sbjct: 18 RCGF-VALVGAPNAGKSTLLNQLVGAKVSIVSRKAQTTRALVRGIAISGESQIILV-DTP 75 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLL-----------KEINSK-KEISFPK----- 318 GI +E+ + +AD ++LL +EI +K E+S PK Sbjct: 76 GIFAPKRRLERAMVASALSGAGDADAVVLLIDARRGLDAEVEEIIAKLNELSAPKILVLN 135 Query: 319 NIDFIFIGTKSDLYSTYTEEYD----HLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374 +D + + L + T + D ++IS+ G+G+ +L+ K+ S++ K P+ P Sbjct: 136 KVDVVPRESLLGLTAAVTRQADFAETYMISALNGDGVPDLLAKLASMM----KPSPWLYP 191 >gi|219850626|ref|YP_002465059.1| GTP-binding protein Era [Chloroflexus aggregans DSM 9485] gi|219544885|gb|ACL26623.1| GTP-binding protein Era [Chloroflexus aggregans DSM 9485] Length = 468 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 1/94 (1%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R+G+ + ++G N GKS+L NAL + VAIV+ P TTR + L G + DT G Sbjct: 174 RSGF-VALVGKPNVGKSTLLNALLGEKVAIVSPRPQTTRVPVRGILSRPGEQIIFIDTPG 232 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310 I E + + K ++ + NAD+I + +I+ Sbjct: 233 IHEPNHRLGKLMVELAERTLPNADVICFMVDISQ 266 >gi|256832504|ref|YP_003161231.1| small GTP-binding protein [Jonesia denitrificans DSM 20603] gi|256686035|gb|ACV08928.1| small GTP-binding protein [Jonesia denitrificans DSM 20603] Length = 490 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 49/88 (55%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ ++G N GKSSL N +A ++ +V D GTTRD + ++L+G DTAGIR Sbjct: 230 RVALVGRPNVGKSSLLNKVAHENRVVVDDTAGTTRDPVDELIELKGRPWIFVDTAGIRRR 289 Query: 281 DDIVEKEGIK---RTFLEVENADLILLL 305 +++ RT +E A++ ++L Sbjct: 290 VHMMKGADYYASLRTVAAIEKAEVAVIL 317 Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 30/55 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 + I+G N GKS+L N + + A+V D PG TRD ++ + G + DT G Sbjct: 57 LAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYPAEWAGRDFMLVDTGG 111 >gi|222099201|ref|YP_002533769.1| Small GTP-binding protein [Thermotoga neapolitana DSM 4359] gi|221571591|gb|ACM22403.1| Small GTP-binding protein [Thermotoga neapolitana DSM 4359] Length = 439 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 82/171 (47%), Gaps = 26/171 (15%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280 IV+ G N GKSS NAL ++V+IV+D GTT D + ++L V + DT G+ + Sbjct: 47 IVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDV 106 Query: 281 DDI--VEKEGIKRTFLEVENA-------------DLILLLKEINSKKEISFPKNIDFI-F 324 ++ + E +R F + D++ L KE+ EI F ++ I Sbjct: 107 GELGRLRVEKARRVFYRADCGILVTDSAPTPYEDDVVNLFKEM----EIPFVVVVNKIDV 162 Query: 325 IGTKSD----LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371 +G K++ LY + E L+S+ +G +++ I IL +++P+ Sbjct: 163 LGEKAEELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEILPGD-EEIPY 212 >gi|118468050|ref|YP_888037.1| GTP-binding protein EngA [Mycobacterium smegmatis str. MC2 155] gi|118169337|gb|ABK70233.1| GTP-binding protein EngA [Mycobacterium smegmatis str. MC2 155] Length = 471 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/84 (28%), Positives = 44/84 (52%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+L N + + A+V D+PG TRD ++ D + G + DT G Sbjct: 38 LAIVGRPNVGKSTLVNRILGRREAVVQDVPGVTRDRVSYDANWLGRRFVVQDTGGWEPDA 97 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 +++ + + + AD ++L+ Sbjct: 98 KGLQQLVADQALVAMRTADAVILV 121 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 ++ ++G N GKSSL N LA ++V D+ GTT D + ++L G + DTAG+R Sbjct: 211 RVALVGKPNVGKSSLLNRLAGDHRSVVHDMAGTTVDPVDSLIELGGKTWRFVDTAGLRR 269 >gi|253681508|ref|ZP_04862305.1| GTP-binding protein [Clostridium botulinum D str. 1873] gi|253561220|gb|EES90672.1| GTP-binding protein [Clostridium botulinum D str. 1873] Length = 397 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/94 (31%), Positives = 56/94 (59%), Gaps = 2/94 (2%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276 N I + G +N+GKSS+ NA+ +D+++V+++ GTT D ++ ++L + V DTAG Sbjct: 8 NRKHIALYGKTNSGKSSILNAIIGQDISLVSNVKGTTTDPVSKAMELIPFGPVLFIDTAG 67 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310 I + + ++RT +E DL + + +IN+ Sbjct: 68 IDDESQLGNLR-VERTLKTLEKTDLAIYIMDINN 100 >gi|269218471|ref|ZP_06162325.1| ribosome-associated GTPase EngA [Actinomyces sp. oral taxon 848 str. F0332] gi|269211582|gb|EEZ77922.1| ribosome-associated GTPase EngA [Actinomyces sp. oral taxon 848 str. F0332] Length = 560 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 34/58 (58%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 ++ +LG N GKSSL N LA + +V GTTRD + ++L+G DTAGIR Sbjct: 297 RVALLGRPNVGKSSLLNRLAGSERVVVDPTAGTTRDPVDEAIELDGQTWIFVDTAGIR 354 Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 30/55 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 + ++G N GKS+L N + + VA+V D+PG TRD + G + DT G Sbjct: 124 LAVVGRPNVGKSTLVNRIVGRRVAVVQDVPGVTRDRVGYPASWAGRDFTLVDTGG 178 >gi|75763043|ref|ZP_00742832.1| GTP-binding protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74489475|gb|EAO52902.1| GTP-binding protein [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 251 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS++FN + + V+IV DIPG TRD + + + I DT GI D Sbjct: 6 IAIVGRPNVGKSTIFNRIVGERVSIVEDIPGITRDRIYSAGEWLNHEFNIIDTGGIDIGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + ++ + ++ AD+I+ + Sbjct: 66 EPFLTQIRQQAEVAIDEADVIIFM 89 Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 33/58 (56%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 ++G N GKSSL +AL ++ IV++I G TRD + + I DTAG+R D Sbjct: 180 LIGRPNVGKSSLVHALLGQERVIVSNIAGPTRDAVDTPYSTDDQDYVIIDTAGMRTKD 237 >gi|38233787|ref|NP_939554.1| GTP-binding protein EngA [Corynebacterium diphtheriae NCTC 13129] gi|38200048|emb|CAE49724.1| Putative GTP-binding protein [Corynebacterium diphtheriae] Length = 547 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 41/65 (63%) Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274 I+ ++ ++G N GKSSL N ++ +D ++V ++ GTT D + + L+ +L K DT Sbjct: 281 IVEGPRRVALVGKPNVGKSSLLNKMSGEDRSVVDNVSGTTVDPVDSIVKLDKHLWKFIDT 340 Query: 275 AGIRE 279 AG+R+ Sbjct: 341 AGLRK 345 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 29/55 (52%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 + I+G N GKSSL N + A+V D PG TRD ++ D G + DT G Sbjct: 115 VAIVGRPNVGKSSLVNRFLGRREAVVEDFPGVTRDRISYLADWGGRRFWVQDTGG 169 >gi|302871114|ref|YP_003839750.1| small GTP-binding protein [Caldicellulosiruptor obsidiansis OB47] gi|302573973|gb|ADL41764.1| small GTP-binding protein [Caldicellulosiruptor obsidiansis OB47] Length = 403 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 53/88 (60%), Gaps = 8/88 (9%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTAGIRE 279 I I G NAGKSSL NA+ + +AIV++ PGTT D + +++ G +V I DTAGI Sbjct: 12 IAIFGKRNAGKSSLINAITNQPIAIVSETPGTTTDPVYKSMEILPLGPVVLI-DTAGI-- 68 Query: 280 TDDIVE--KEGIKRTFLEVENADLILLL 305 DD+ E K +++T + D+ +L+ Sbjct: 69 -DDVGELGKLRVEKTLEVLNKTDIAILV 95 >gi|168179376|ref|ZP_02614040.1| GTP-binding protein Era [Clostridium botulinum NCTC 2916] gi|182669495|gb|EDT81471.1| GTP-binding protein Era [Clostridium botulinum NCTC 2916] Length = 296 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 52/91 (57%), Gaps = 1/91 (1%) Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274 + ++G+ + I+G N GKS+L NA+ K+ ++IV+ P TTR+ + L + Y + DT Sbjct: 1 MFKSGF-VTIVGRPNVGKSTLLNAIMKEKLSIVSCRPQTTRNNIQTILTEDNYQLVFVDT 59 Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLL 305 GI + + + +K +++ DL+L L Sbjct: 60 PGIHKPKHKLGEYMVKSASDAMKDVDLVLFL 90 >gi|78358630|ref|YP_390079.1| GTP-binding protein Era [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78221035|gb|ABB40384.1| GTP-binding protein Era [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 308 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 29/93 (31%), Positives = 52/93 (55%), Gaps = 1/93 (1%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R G+ + ++G NAGKS++ N+L + VAIVT P TTR+ + L V DT G Sbjct: 8 RCGW-VALMGPPNAGKSTMMNSLLGQKVAIVTPKPQTTRNQIVGILTQPDAQVVFMDTPG 66 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309 I + + + ++ + ++ AD+I+++ + N Sbjct: 67 IHQLRGKMNRLLLQAAWQSMDGADVIMVVLDSN 99 >gi|168181631|ref|ZP_02616295.1| GTP-binding protein Era [Clostridium botulinum Bf] gi|237796398|ref|YP_002863950.1| GTP-binding protein Era [Clostridium botulinum Ba4 str. 657] gi|259645941|sp|C3L3F3|ERA_CLOB6 RecName: Full=GTPase Era gi|182675144|gb|EDT87105.1| GTP-binding protein Era [Clostridium botulinum Bf] gi|229262668|gb|ACQ53701.1| GTP-binding protein Era [Clostridium botulinum Ba4 str. 657] Length = 296 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 52/91 (57%), Gaps = 1/91 (1%) Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274 + ++G+ + I+G N GKS+L NA+ K+ ++IV+ P TTR+ + L + Y + DT Sbjct: 1 MFKSGF-VTIVGRPNVGKSTLLNAIMKEKLSIVSCRPQTTRNNIQTILTEDNYQLVFVDT 59 Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLL 305 GI + + + +K +++ DL+L L Sbjct: 60 PGIHKPKHKLGEYMVKSASDAMKDVDLVLFL 90 >gi|149194255|ref|ZP_01871352.1| GTP-binding protein Era [Caminibacter mediatlanticus TB-2] gi|149135430|gb|EDM23909.1| GTP-binding protein Era [Caminibacter mediatlanticus TB-2] Length = 293 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 74/154 (48%), Gaps = 19/154 (12%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 I+G NAGKS+L N L + +A+V+ +R + + + + DT G+ E + + Sbjct: 9 IIGKPNAGKSTLLNWLLGEKIALVSPKANASRKRVNAIVMHNDDQIILLDTPGLHEKEKL 68 Query: 284 VEKEGIKRTFLEVENADLILLLKEINSKKEIS------FPKNIDFIFIGTKSDLYS---- 333 + K +K + ++DL+L L ++ E KNI I + TK+DL + Sbjct: 69 LNKFMLKEALKALSDSDLVLFLADVRDDLEGYEWFLELNKKNIPHIVVLTKTDLVNEEEV 128 Query: 334 -TYTEEYDHL--------ISSFTGEGLEELINKI 358 EEY + IS+ G+G EEL+++I Sbjct: 129 KNKIEEYKKIGKALVIIPISAIEGKGKEELLDEI 162 >gi|256372048|ref|YP_003109872.1| GTP-binding protein Era [Acidimicrobium ferrooxidans DSM 10331] gi|317374861|sp|C7LZP1|ERA_ACIFD RecName: Full=GTPase Era gi|256008632|gb|ACU54199.1| GTP-binding protein Era [Acidimicrobium ferrooxidans DSM 10331] Length = 287 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 78/166 (46%), Gaps = 20/166 (12%) Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274 I R+G+ + ++G +N GKSSL NALA + IV+ P TTR + + + + + DT Sbjct: 9 IRRSGF-VAVIGRTNVGKSSLVNALAGERATIVSRHPNTTRRSVRVISRVGDAELVLVDT 67 Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLL-----------KEINSK---KEISFPKNI 320 GI D + + E + AD LL+ +E+ S+ +++ I Sbjct: 68 PGIAAAHDELSARLRRWVDDEWDGADRALLVVDAERGVGARERELASRLKPSDVAVVARI 127 Query: 321 DFI----FIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362 D + + ++L EY + S TGEG+EEL + + S L Sbjct: 128 DRVRRARTLAVLAELAQVPLAEY-FVASVRTGEGIEELRSYLASSL 172 >gi|303256256|ref|ZP_07342272.1| GTP-binding protein [Burkholderiales bacterium 1_1_47] gi|331001317|ref|ZP_08324943.1| hydrogenase maturation GTPase HydF [Parasutterella excrementihominis YIT 11859] gi|302860985|gb|EFL84060.1| GTP-binding protein [Burkholderiales bacterium 1_1_47] gi|329569044|gb|EGG50840.1| hydrogenase maturation GTPase HydF [Parasutterella excrementihominis YIT 11859] Length = 404 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 29/63 (46%), Positives = 41/63 (65%), Gaps = 1/63 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAGIRET 280 I I G NAGKSS+ NAL K+++A+V+D+ GTT D + ++ L V I DTAGI + Sbjct: 15 IGIFGRRNAGKSSVINALTKQNIALVSDVAGTTTDPVFKAMEILPLGPVMIIDTAGIDDI 74 Query: 281 DDI 283 D+ Sbjct: 75 GDL 77 >gi|313665394|ref|YP_004047265.1| GTP-binding protein Era [Mycoplasma leachii PG50] gi|312949205|gb|ADR23801.1| GTP-binding protein Era [Mycoplasma leachii PG50] Length = 301 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 51/175 (29%), Positives = 88/175 (50%), Gaps = 32/175 (18%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTIDLDLEGYLVKISDTA 275 ++G+ + I+G N GKS+L N L + ++IVT+ P TTR ++ I + Y + DT Sbjct: 5 KSGF-VSIIGRPNVGKSTLLNKLIGEKISIVTNKPQTTRNNIRGILTKKDQYQIVFIDTP 63 Query: 276 GIRET----DDIVEKEGIKRTFLEVENADLILLLK---EINSKKEISF---PKNIDF--I 323 G+ T D ++ +K T ++ D+IL L E+ K ++ KN+D I Sbjct: 64 GVHTTKKQLDKVLNTSALKST----KDVDVILFLAPSDEVIGKNDLFLLKQIKNLDVFKI 119 Query: 324 FIGTKSDL------------YSTYTEEYDHLI--SSFTGEGLEELINKIKSILSN 364 + TK+D +S Y +++D +I SS T +E+L+ I + LS+ Sbjct: 120 LVITKADSVTKEQLILKANEWSAYQDQFDEIIITSSITNLNIEKLLELIVNNLSD 174 >gi|281412764|ref|YP_003346843.1| ribosome biogenesis GTP-binding protein YsxC [Thermotoga naphthophila RKU-10] gi|281373867|gb|ADA67429.1| ribosome biogenesis GTP-binding protein YsxC [Thermotoga naphthophila RKU-10] Length = 195 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 26/167 (15%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS--DTAGIRE 279 + +G SN GKSSL NAL K +A V+ PG TR + ++ + Y V + A + + Sbjct: 26 VAFVGRSNVGKSSLLNALFNKKIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSK 85 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPK--NIDFIFIGTKSDL 331 + ++ K ++ F + ++ LL + + + + K NI F + TK D Sbjct: 86 KERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDK 145 Query: 332 ----------------YSTYTEEYDHLISSFTGEGLEELINKIKSIL 362 +S Y E SS TGEG+ EL++ I ++L Sbjct: 146 VKMSERAKKLEEHQKEFSRYGEYTIIPTSSVTGEGISELLDLISTLL 192 >gi|225017068|ref|ZP_03706260.1| hypothetical protein CLOSTMETH_00993 [Clostridium methylpentosum DSM 5476] gi|224950235|gb|EEG31444.1| hypothetical protein CLOSTMETH_00993 [Clostridium methylpentosum DSM 5476] Length = 439 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 54/175 (30%), Positives = 83/175 (47%), Gaps = 21/175 (12%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAG 276 N + I+G++NAGKS+L NAL V + T D L+L +G V + DT G Sbjct: 219 NVTSVAIVGYTNAGKSTLLNALTDAGVLAENKLFATL-DPTARALELPDGKSVLLIDTVG 277 Query: 277 I--RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDF 322 + R +V E K T E NADLIL + ++++ + S K +I Sbjct: 278 LISRLPHHLV--EAFKSTLEEAANADLILHVCDVSNDEVESQVKVVHQLLGELGCGSIPV 335 Query: 323 IFIGTKSD--LYSTYTEEYDH-LISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374 + + K D + Y E D +IS+ TG G + L++KI S L +++ IP Sbjct: 336 LTVLNKCDKIPFQPYLSEPDSVMISAKTGFGFDNLLHKIASSLEQTSRRMKLLIP 390 >gi|148265178|ref|YP_001231884.1| GTP-binding protein Era [Geobacter uraniireducens Rf4] gi|259645947|sp|A5G693|ERA_GEOUR RecName: Full=GTPase Era gi|146398678|gb|ABQ27311.1| GTP-binding protein Era [Geobacter uraniireducens Rf4] Length = 297 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 49/233 (21%), Positives = 99/233 (42%), Gaps = 23/233 (9%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R+G+ + I+G N GKS+L N + + I +D P TTR+ + +L G + DT G Sbjct: 7 RSGF-VSIIGRPNVGKSTLLNRILGDKIVITSDKPQTTRNRIQGIHNLPGCQMVFIDTPG 65 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTK 328 I + K + ++ D+IL L E ++K E+ + + + K Sbjct: 66 IHRAKSKLNKYMVDVALSSIKEVDVILFLVEADAKPANQEGMILELLANADAPVLLVINK 125 Query: 329 SDLY---------STYTEEYDHL----ISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375 DL + Y Y +S+ +G+G+E L+ + + P I + Sbjct: 126 IDLVAKEALLERIAAYAALYPFREIVPVSALSGDGVERLVEVVHGFIPAGPPYFPDDILT 185 Query: 376 HKRHLYHLSQTVR-YLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQ 427 + +++ +R + + +E + ++ E+ + + L I ++VE+ Sbjct: 186 DLPERFIVAEMIREKIFRLTHDEVPYSVAVVVESFKERADGLVSIAAAINVER 238 >gi|257055518|ref|YP_003133350.1| GTP-binding protein EngA [Saccharomonospora viridis DSM 43017] gi|256585390|gb|ACU96523.1| small GTP-binding protein domain/GTP-binding conserved hypothetical protein [Saccharomonospora viridis DSM 43017] Length = 470 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 50/88 (56%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 ++ ++G N GKSSL N L + A+V + GTT D + ++L+G L + DTAG+R Sbjct: 209 RVALVGKPNVGKSSLLNKLTGEQRAVVDSVAGTTVDPVDSLVELDGQLWRFIDTAGLRKR 268 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305 +T E RT ++ A+++++L Sbjct: 269 VQTASGTEYYASLRTKNAIDAAEVVIVL 296 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 30/55 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 + ++G N GKS+L N + + A+V D PG TRD ++ D G + DT G Sbjct: 36 VAVVGRPNVGKSTLVNRILGRREAVVQDTPGVTRDRISYDATWRGRRFTLVDTGG 90 >gi|159037544|ref|YP_001536797.1| small GTP-binding protein [Salinispora arenicola CNS-205] gi|189037157|sp|A8LYU3|DER_SALAI RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|157916379|gb|ABV97806.1| small GTP-binding protein [Salinispora arenicola CNS-205] Length = 467 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 30/55 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 + ++G N GKS+L N L + A+V D+PG TRD + D G + DT G Sbjct: 27 VAVVGRPNVGKSTLVNRLIGRRQAVVEDVPGVTRDRVPYDAQWNGRQFAVVDTGG 81 Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 37/63 (58%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R ++ ++G N GKSSL N + + A+V + GTT D + +++ G ++ DTAG Sbjct: 196 RGPRRVALVGRPNVGKSSLLNRFSGEVRAVVDAVAGTTVDPVDSLVEIGGEAWQLVDTAG 255 Query: 277 IRE 279 +R+ Sbjct: 256 LRK 258 >gi|78223517|ref|YP_385264.1| GTP-binding protein EngA [Geobacter metallireducens GS-15] gi|123571482|sp|Q39T85|DER_GEOMG RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|78194772|gb|ABB32539.1| GTP-binding protein Era, putative [Geobacter metallireducens GS-15] Length = 439 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 +I ++G N GKSSL N L + + PGTTRD + + DTAGIR Sbjct: 177 RIAVVGRPNVGKSSLVNRLLGFERVVANPTPGTTRDSVDTLFACNKKRYLLIDTAGIRRK 236 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 +T +EK + + +E AD++L++ IN+++ ++ Sbjct: 237 GKTTQKLEKYSVVDSLRSIERADVVLII--INAEEGVT 272 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 3/86 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV-LTIDLDLEGYLVKISDTAGIRE- 279 + I+G N GKS+LFN L + AIV D+PG TRD E + I DT G Sbjct: 5 VAIVGRPNVGKSTLFNRLVGRRKAIVDDMPGVTRDRNYETVTRFEAPFILI-DTGGFEPV 63 Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305 ++D + ++ +++ L +E AD+I+ L Sbjct: 64 SEDRLLQQMREQSQLAMEEADVIIFL 89 >gi|170761539|ref|YP_001788258.1| GTP-binding protein Era [Clostridium botulinum A3 str. Loch Maree] gi|226741201|sp|B1KZM3|ERA_CLOBM RecName: Full=GTPase Era gi|169408528|gb|ACA56939.1| GTP-binding protein Era [Clostridium botulinum A3 str. Loch Maree] Length = 296 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 52/91 (57%), Gaps = 1/91 (1%) Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274 + ++G+ + I+G N GKS+L NA+ K+ ++IV+ P TTR+ + L + Y + DT Sbjct: 1 MFKSGF-VTIVGRPNVGKSTLLNAIMKEKLSIVSCRPQTTRNNIQTILTEDNYQLVFVDT 59 Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLL 305 GI + + + +K +++ DL+L L Sbjct: 60 PGIHKPKHKLGEYMVKSASDAMKDVDLVLFL 90 >gi|170754569|ref|YP_001782578.1| GTP-binding protein Era [Clostridium botulinum B1 str. Okra] gi|226741200|sp|B1ILK9|ERA_CLOBK RecName: Full=GTPase Era gi|169119781|gb|ACA43617.1| GTP-binding protein Era [Clostridium botulinum B1 str. Okra] gi|322807262|emb|CBZ04836.1| GTP-binding protein Era [Clostridium botulinum H04402 065] Length = 296 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 52/91 (57%), Gaps = 1/91 (1%) Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274 + ++G+ + I+G N GKS+L NA+ K+ ++IV+ P TTR+ + L + Y + DT Sbjct: 1 MFKSGF-VTIVGRPNVGKSTLLNAIMKEKLSIVSCRPQTTRNNIQTILTEDNYQLVFVDT 59 Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLL 305 GI + + + +K +++ DL+L L Sbjct: 60 PGIHKPKHKLGEYMVKSASDAMKDVDLVLFL 90 >gi|187778474|ref|ZP_02994947.1| hypothetical protein CLOSPO_02068 [Clostridium sporogenes ATCC 15579] gi|226950371|ref|YP_002805462.1| GTP-binding protein Era [Clostridium botulinum A2 str. Kyoto] gi|254783292|sp|C1FVS6|ERA_CLOBJ RecName: Full=GTPase Era gi|187772099|gb|EDU35901.1| hypothetical protein CLOSPO_02068 [Clostridium sporogenes ATCC 15579] gi|226842790|gb|ACO85456.1| GTP-binding protein Era [Clostridium botulinum A2 str. Kyoto] Length = 296 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 52/91 (57%), Gaps = 1/91 (1%) Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274 + ++G+ + I+G N GKS+L NA+ K+ ++IV+ P TTR+ + L + Y + DT Sbjct: 1 MFKSGF-VTIVGRPNVGKSTLLNAIMKEKLSIVSCRPQTTRNNIQTILTEDNYQLVFVDT 59 Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLL 305 GI + + + +K +++ DL+L L Sbjct: 60 PGIHKPKHKLGEYMVKSASDAMKDVDLVLFL 90 >gi|114775464|ref|ZP_01451032.1| GTP-binding protein Era [Mariprofundus ferrooxydans PV-1] gi|114553575|gb|EAU55956.1| GTP-binding protein Era [Mariprofundus ferrooxydans PV-1] Length = 301 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 2/89 (2%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRET 280 + +LG N GKS+L N + + VAIVT P TTR +L I D L+ + DT GI + Sbjct: 11 VALLGRPNVGKSTLMNHIIRAKVAIVTPKPQTTRHRILGIYNDDARQLIFV-DTPGIHKG 69 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN 309 D + + ++ + E AD++ +++++ Sbjct: 70 DKQLNRNMVRIAYGAAEEADVLAIMQDVT 98 >gi|320528085|ref|ZP_08029250.1| ribosome biogenesis GTPase YqeH [Solobacterium moorei F0204] gi|320131433|gb|EFW23998.1| ribosome biogenesis GTPase YqeH [Solobacterium moorei F0204] Length = 349 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 13/109 (11%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 NG +IV++G +N+GKS+L N L V + PGTT D +++D Y+ DT GI Sbjct: 152 NGRQIVVMGKANSGKSTLINNLMSTRVLTASRYPGTTLDFNELEIDGHTYI----DTPGI 207 Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIG 326 + + +EV ADL ++ N K ++ + F+G Sbjct: 208 EIGNSM---------LMEVSEADLKTIMPSKNIKPQVFQLRGEQSFFVG 247 >gi|323356745|ref|YP_004223141.1| GTPase [Microbacterium testaceum StLB037] gi|323273116|dbj|BAJ73261.1| GTPase [Microbacterium testaceum StLB037] Length = 505 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 76/176 (43%), Gaps = 27/176 (15%) Query: 222 IVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 + I G++NAGKSSL N L V A+ + T R T D G + ++DT G Sbjct: 289 VAIAGYTNAGKSSLLNRLTSAGVLVENALFATLDATVRRSETTD----GRVYTLTDTVGF 344 Query: 278 RETDDIVEKEGIKRTFLEVENADLILLL---------KEINSKKEISFPKNIDF---IFI 325 E + T EV +AD+IL + ++ + +++ DF I + Sbjct: 345 VRNLPHQLVEAFRSTLEEVGDADVILHVVDASHPDPAAQLATVRDVMGDVEADFGHEIVV 404 Query: 326 GTKSDLYSTYTE-------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374 K+DL S + H +SS TGEG++EL I+ L ++ +P Sbjct: 405 FNKADLVSDDDRLVLRGLAPHAHFVSSRTGEGIDELRAAIEEALPRPAVEVQAVVP 460 >gi|225575179|ref|ZP_03783789.1| hypothetical protein RUMHYD_03268 [Blautia hydrogenotrophica DSM 10507] gi|225037587|gb|EEG47833.1| hypothetical protein RUMHYD_03268 [Blautia hydrogenotrophica DSM 10507] Length = 402 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 80/155 (51%), Gaps = 10/155 (6%) Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDI 283 G NAGKSS+ NA+ +D+A+V+D+ GTT D ++ ++L V I DT G+ + + Sbjct: 17 FGMRNAGKSSVVNAVTGQDLAVVSDVRGTTTDPVSKAMELLPLGPVVIIDTPGMDDEGAL 76 Query: 284 VE------KEGIKRTFLEVENADLILLLKEINSK-KEISFPKNIDFIFIGTKSDLYSTYT 336 E ++ + +T + V D + +KE + + I K I ++ + K+DL Sbjct: 77 GELRVKKARQVLNKTDVAVLVVDAAVGMKEADQELLSIIKEKEIPYVVVYNKADLLKERQ 136 Query: 337 EEYDH--LISSFTGEGLEELINKIKSILSNKFKKL 369 E + +S+ TGE + EL KI ++ + KL Sbjct: 137 PEGEGEIYVSAVTGEKIYELKEKIAALAVTEEPKL 171 >gi|154249358|ref|YP_001410183.1| GTP-binding protein Era [Fervidobacterium nodosum Rt17-B1] gi|154153294|gb|ABS60526.1| GTP-binding protein Era [Fervidobacterium nodosum Rt17-B1] Length = 301 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 51/91 (56%), Gaps = 1/91 (1%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273 ++I++G+ +G N GKSS+ NA+ KK V IV++ P TTR+ + + + + + D Sbjct: 2 QLIKSGFA-SFVGKPNVGKSSIINAIMKKKVVIVSEKPQTTRNRINVIYTTDDFQIVFVD 60 Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILL 304 T GI + + + +K ++N DL+L Sbjct: 61 TPGIHKPLHRLGEYMVKAAVQALKNVDLLLF 91 >gi|315185968|gb|EFU19732.1| GTP-binding proten HflX [Spirochaeta thermophila DSM 6578] Length = 408 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 48/175 (27%), Positives = 81/175 (46%), Gaps = 19/175 (10%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRE 279 ++ ++G++NAGKSSLF L + V I D P T D T + G+ V +SDT G + Sbjct: 199 RVSLVGYTNAGKSSLFTRLTGQAVRI-QDRPFVTLDTTTRTCLIPGWGRVVVSDTVGFIQ 257 Query: 280 TDDIVEKEGIKRTFLEVENADLIL---------LLKEINSKKEISF---PKNIDFIFIGT 327 + T EV +A L+L LL +++ +E+ +I I + Sbjct: 258 HLPHTLVDAFHATLEEVRDAHLLLEVVDLSSPNLLLHLSTTEEVLTEIGAHHIPRIRVYN 317 Query: 328 KSDLYSTY-----TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377 K D S + + + L+S+ TGEG+E L++ I + + +P H+ Sbjct: 318 KVDRSSPHPLLPPSNHPEILVSAKTGEGIEGLLSLIVREMERHYPIETLELPYHR 372 >gi|294101756|ref|YP_003553614.1| GTP-binding protein Era [Aminobacterium colombiense DSM 12261] gi|293616736|gb|ADE56890.1| GTP-binding protein Era [Aminobacterium colombiense DSM 12261] Length = 308 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 47/88 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKSSL N + V+IV++ P TTR+ + + + +DT GI Sbjct: 13 VPIVGRPNVGKSSLLNNILAYKVSIVSEKPQTTRNAIHGIYNEPEMQIVFTDTPGIHRPR 72 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN 309 + + +K +ENADLIL + E++ Sbjct: 73 HKLGEALVKAAVRSLENADLILYVVEVD 100 >gi|312115947|ref|YP_004013543.1| GTP-binding protein Era [Rhodomicrobium vannielii ATCC 17100] gi|311221076|gb|ADP72444.1| GTP-binding protein Era [Rhodomicrobium vannielii ATCC 17100] Length = 364 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 81/183 (44%), Gaps = 34/183 (18%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTA 275 R G+ VI G NAGKS+L NAL V+IVT TTR V I LD E +V + DT Sbjct: 70 RCGFAAVI-GAPNAGKSTLVNALVGAKVSIVTHKAQTTRTRVRGIALDGEAQIV-LVDTP 127 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKE------------INSKKEISFP-----K 318 GI +++ ++ + E AD+ +L+ + +N + P Sbjct: 128 GIFAPKRRLDRAMVETAWTEAREADVAVLVVDAARGFDDTVDPIVNEAANLKIPLILALN 187 Query: 319 NIDFIFIGTKSDLYSTYTEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLPF 371 +D I K L + E + L IS+ +G+G+E+L + L+ + P+ Sbjct: 188 KVDKIH---KEKLLALAGEASERLKLESLFMISALSGDGVEDL----RGFLATRMPYGPW 240 Query: 372 SIP 374 P Sbjct: 241 LFP 243 >gi|225848212|ref|YP_002728375.1| ribosome biogenesis GTP-binding protein YsxC [Sulfurihydrogenibium azorense Az-Fu1] gi|225644647|gb|ACN99697.1| ribosome biogenesis GTP-binding protein YsxC [Sulfurihydrogenibium azorense Az-Fu1] Length = 194 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 2/86 (2%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT--AGIRE 279 + ++G SN GKSSL NA+ K+ VA V+ PG TR + L+ + Y V + A + + Sbjct: 26 VAVVGRSNVGKSSLINAIFKRSVAKVSSTPGKTRLINFFTLNNDIYFVDLPGYGFASVSQ 85 Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305 + + ++ I+ L EN LI++L Sbjct: 86 KERLSWQKMIENYLLNRENLKLIIML 111 >gi|183982543|ref|YP_001850834.1| GTP-binding protein, EngA [Mycobacterium marinum M] gi|238690962|sp|B2HRU9|DER_MYCMM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|183175869|gb|ACC40979.1| GTP-binding protein, EngA [Mycobacterium marinum M] Length = 469 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 41/167 (24%), Positives = 69/167 (41%), Gaps = 26/167 (15%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+L N + + A+V DIPG TRD ++ D G + DT G Sbjct: 32 LAIVGRPNVGKSTLVNRILGRREAVVQDIPGVTRDRVSYDALWNGRRFVVQDTGGWEPDA 91 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSD--- 330 +++ ++ + + AD ++L+ + + I K D Sbjct: 92 KGLQQLVAEQASVAMRTADAVVLVVDATVGATTADEAAARILLRSGKPVFLAANKVDSDK 151 Query: 331 -------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370 L+S E H IS+ G G+ +L++ + KKLP Sbjct: 152 AEADAATLWSMGLGE-PHAISAMHGRGVADLLDTV-------LKKLP 190 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 37/59 (62%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 ++ ++G N GKSSL N LA + ++V D+ GTT D + ++L G + + DTAG+R Sbjct: 204 RVALVGKPNVGKSSLLNKLAGDERSVVHDVAGTTVDPVDSLIELGGKVWRFVDTAGLRR 262 >gi|237755489|ref|ZP_04584111.1| ribosome biogenesis GTP-binding protein YsxC [Sulfurihydrogenibium yellowstonense SS-5] gi|237692353|gb|EEP61339.1| ribosome biogenesis GTP-binding protein YsxC [Sulfurihydrogenibium yellowstonense SS-5] Length = 197 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 60/135 (44%), Gaps = 34/135 (25%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR---------DVLTIDLDLEGYL 268 N +I I+G SN GKSSL NA+ K+ +A V+ PG TR D+ +DL G+ Sbjct: 23 NKPEIAIVGRSNVGKSSLINAIFKRSIAKVSATPGKTRLINFFLLNDDIYFVDLPGYGF- 81 Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNID------- 321 A + + K I+ L EN +LI++L + P N+D Sbjct: 82 ------AAVSHKEKQNWKRMIEDYLLNRENLNLIIMLVDTRYP-----PTNLDVLMKEWL 130 Query: 322 ------FIFIGTKSD 330 +I +GTK D Sbjct: 131 ESFEKPYIVVGTKID 145 >gi|313837161|gb|EFS74875.1| GTP-binding protein HflX [Propionibacterium acnes HL037PA2] gi|314927817|gb|EFS91648.1| GTP-binding protein HflX [Propionibacterium acnes HL044PA1] gi|314971934|gb|EFT16032.1| GTP-binding protein HflX [Propionibacterium acnes HL037PA3] gi|328907281|gb|EGG27047.1| GTP-binding protein HflX [Propionibacterium sp. P08] Length = 483 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 52/180 (28%), Positives = 85/180 (47%), Gaps = 35/180 (19%) Query: 222 IVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG- 276 + I+G++NAGKSSL N L + V A+ + TTR T D G + ++DT G Sbjct: 265 VAIVGYTNAGKSSLLNRLTRAGVLVENALFATLDPTTRRTTTSD----GRVYTLTDTVGF 320 Query: 277 IRE-TDDIVEKEGIKRTFLEVENADLIL---------LLKEINSKKEI-------SFPKN 319 +R D+V E T E AD++L + ++++ + + + P+ Sbjct: 321 VRHLPHDLV--EAFASTLEETAMADVLLHVVDAADPDPVGQVDAVRAVLSGIGASAIPEV 378 Query: 320 IDFIFIGTKSD-----LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374 + I SD L ST+ E Y L+S+ TGEG +ELI +++ L + + IP Sbjct: 379 LVLNKIDRLSDDAIVALRSTFPEAY--LVSAHTGEGTDELIEAVEADLPVPSQCVDAVIP 436 >gi|153941135|ref|YP_001392222.1| GTP-binding protein Era [Clostridium botulinum F str. Langeland] gi|189037261|sp|A7GHG2|ERA_CLOBL RecName: Full=GTPase Era gi|152937031|gb|ABS42529.1| GTP-binding protein Era [Clostridium botulinum F str. Langeland] gi|295320220|gb|ADG00598.1| GTP-binding protein Era [Clostridium botulinum F str. 230613] Length = 296 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 52/91 (57%), Gaps = 1/91 (1%) Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274 + ++G+ + I+G N GKS+L NA+ K+ ++IV+ P TTR+ + L + Y + DT Sbjct: 1 MFKSGF-VTIVGRPNVGKSTLLNAIMKEKLSIVSCRPQTTRNNIQTILTEDNYQLVFVDT 59 Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLL 305 GI + + + +K +++ DL+L L Sbjct: 60 PGIHKPKHKLGEYMVKSASDAMKDVDLVLFL 90 >gi|16329800|ref|NP_440528.1| ferrous iron transport protein B [Synechocystis sp. PCC 6803] gi|2498379|sp|P73182|FEOB_SYNY3 RecName: Full=Ferrous iron transport protein B homolog gi|1652285|dbj|BAA17208.1| ferrous iron transport protein B [Synechocystis sp. PCC 6803] Length = 614 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 1/75 (1%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ +G N GKS+ FN + K + AI + PG T D+ + L+G L++ D GI + Sbjct: 20 RVAFIGQPNTGKSTFFNRITKANAAI-ANWPGLTVDLFRAVVPLQGELIEFVDLPGIYDL 78 Query: 281 DDIVEKEGIKRTFLE 295 + E E + + FL Sbjct: 79 NGFSEDERVVQRFLA 93 >gi|282857683|ref|ZP_06266893.1| small GTP-binding protein [Pyramidobacter piscolens W5455] gi|282584468|gb|EFB89826.1| small GTP-binding protein [Pyramidobacter piscolens W5455] Length = 403 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/56 (48%), Positives = 36/56 (64%), Gaps = 1/56 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI-SDTAG 276 I I G N+GKSSL NALA + +IV+D+PGTT D + ++L G + DTAG Sbjct: 14 IGIFGRRNSGKSSLVNALAGQAASIVSDVPGTTADPVYKAMELRGVGPAVLIDTAG 69 >gi|213966005|ref|ZP_03394195.1| bifunctional cytidylate kinase/GTP-binding protein [Corynebacterium amycolatum SK46] gi|213951419|gb|EEB62811.1| bifunctional cytidylate kinase/GTP-binding protein [Corynebacterium amycolatum SK46] Length = 773 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/98 (28%), Positives = 58/98 (59%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ ++G N GKSSL N L+ ++ A+V+++ GTT D + + ++ L + DTAGIR+ Sbjct: 513 RVALVGKPNVGKSSLLNKLSGENRAVVSNVAGTTVDPVDSLVQMDETLWRFVDTAGIRKK 572 Query: 281 DDIVEKE---GIKRTFLEVENADLILLLKEINSKKEIS 315 + RT ++NA++++ L +++ ++I+ Sbjct: 573 TKTAKGHEFYASLRTRSTIDNAEVVIFL--VDASEQIT 608 Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust. Identities = 23/84 (27%), Positives = 41/84 (48%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++ N + A+V D PG TRD ++ + G + DT G Sbjct: 341 VAIVGRPNVGKSTMVNRFIGRREAVVEDFPGVTRDRISYLGEWGGRRFWVQDTGGWDPDA 400 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + ++ +E AD+I+++ Sbjct: 401 KGMHAAIARQAETAMETADVIVMV 424 >gi|114794390|pdb|2HJG|A Chain A, The Crystal Structure Of The B. Subtilis Yphc Gtpase In Complex With Gdp Length = 436 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/83 (31%), Positives = 45/83 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN +A + ++IV D PG TRD + + Y + DT GI D Sbjct: 6 VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILL 304 + + ++ + + AD+I+ Sbjct: 66 EPFLAQIRQQAEIAXDEADVIIF 88 Score = 43.9 bits (102), Expect = 0.045, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 3/85 (3%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 ++G N GKSSL NA ++ IV+++ GTTRD + I DTAG R+ + Sbjct: 180 LIGRPNVGKSSLVNAXLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGXRKKGKV 239 Query: 284 ---VEKEGIKRTFLEVENADLILLL 305 EK + R ++ ++++ ++ Sbjct: 240 YETTEKYSVLRALKAIDRSEVVAVV 264 >gi|222523307|ref|YP_002567777.1| GTP-binding protein Era [Chloroflexus sp. Y-400-fl] gi|222447186|gb|ACM51452.1| GTP-binding protein Era [Chloroflexus sp. Y-400-fl] Length = 469 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 1/94 (1%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R+G+ + ++G N GKS+L NAL + VAIV+ P TTR + L G + DT G Sbjct: 175 RSGF-VALVGKPNVGKSTLLNALLGEKVAIVSPRPQTTRVPVRGILSRPGEQIIFIDTPG 233 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310 I E + K ++ + NAD+I + +I+ Sbjct: 234 IHEPSHRLGKLMVELAERTLPNADVICFMVDISQ 267 >gi|114567436|ref|YP_754590.1| GTPase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338371|gb|ABI69219.1| GTPase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 375 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 53/177 (29%), Positives = 85/177 (48%), Gaps = 40/177 (22%) Query: 217 RNGYKIV-ILGHSNAGKSSLFNALAKKDVAIVTDIPGT--------TRDVLTIDLDLEG- 266 R GY+++ ++G++NAGKSSLFNAL + VA + P T D T + L+ Sbjct: 204 RAGYQVISLVGYTNAGKSSLFNALCQ--VAHSSGQPQVEANRRLFQTLDTTTRKIKLDSH 261 Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL-------------------LLKE 307 Y V I+DT G + + T E ADL+L +L+E Sbjct: 262 YEVLITDTVGFIQNLPHHLVAAFRSTLEEAVAADLLLHVVDLADPAYLDKIKVVEGVLEE 321 Query: 308 INSKKEISFPKNIDFIFIGTKSDLYSTYT--EEYDHLISSFTGEGLEELINKIKSIL 362 + ++KE P +F K DL + + + + +S+ TG+G+EEL+ +IK+ L Sbjct: 322 LGAEKERIMP-----VF--NKVDLLAGISPIQAPPNYVSARTGQGIEELLGQIKNRL 371 >gi|302335754|ref|YP_003800961.1| GTP-binding protein Era [Olsenella uli DSM 7084] gi|301319594|gb|ADK68081.1| GTP-binding protein Era [Olsenella uli DSM 7084] Length = 312 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 1/89 (1%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R+G+ + ++G + GKS+L NA K +AI + + TTR + ++ EG + I DT G Sbjct: 18 RSGF-VALVGRPSVGKSTLLNACFKDKIAITSPVAQTTRRRMRATINAEGSQLVIVDTPG 76 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL 305 + + D + KE K E+ + D + L Sbjct: 77 LHKPKDALGKELNKVALGELADVDAVAFL 105 >gi|163845608|ref|YP_001633652.1| GTP-binding protein Era [Chloroflexus aurantiacus J-10-fl] gi|163666897|gb|ABY33263.1| GTP-binding protein Era [Chloroflexus aurantiacus J-10-fl] Length = 469 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 1/94 (1%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R+G+ + ++G N GKS+L NAL + VAIV+ P TTR + L G + DT G Sbjct: 175 RSGF-VALVGKPNVGKSTLLNALLGEKVAIVSPRPQTTRVPVRGILSRPGEQIIFIDTPG 233 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310 I E + K ++ + NAD+I + +I+ Sbjct: 234 IHEPSHRLGKLMVELAERTLPNADVICFMVDISQ 267 >gi|313905112|ref|ZP_07838481.1| small GTP-binding protein [Eubacterium cellulosolvens 6] gi|313470015|gb|EFR65348.1| small GTP-binding protein [Eubacterium cellulosolvens 6] Length = 401 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 1/67 (1%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276 N I + G NAGKS+L NAL ++V+IV+D GTT DV+ +++ G DTAG Sbjct: 12 NRTHIGLFGRMNAGKSTLLNALTSQEVSIVSDRAGTTTDVVKKPMEIHGIGACTFLDTAG 71 Query: 277 IRETDDI 283 I ++ ++ Sbjct: 72 IDDSGEL 78 >gi|168181051|ref|ZP_02615715.1| GTP-binding protein [Clostridium botulinum NCTC 2916] gi|226951037|ref|YP_002806128.1| GTP-binding protein [Clostridium botulinum A2 str. Kyoto] gi|182668048|gb|EDT80027.1| GTP-binding protein [Clostridium botulinum NCTC 2916] gi|226843593|gb|ACO86259.1| GTP-binding protein [Clostridium botulinum A2 str. Kyoto] Length = 399 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 42/126 (33%), Positives = 66/126 (52%), Gaps = 16/126 (12%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276 N I +G +N+GKSSL NA+ +D++IV+ I GTT D ++ ++L V +DTAG Sbjct: 8 NRIHITFIGKTNSGKSSLMNAIIGQDISIVSPIEGTTTDPVSKSMELIPLGPVLFTDTAG 67 Query: 277 IRETDDI--VEKEGIKRTFLEVENA---------DLILLLKEINSKKEISFPKNIDFIFI 325 + + ++ V E T L+ + A D+ L K IN KE +NI +I + Sbjct: 68 LEDNTELGKVRIEKTLNTLLKTDFAIYVMSAKDIDINLYKKTINKFKE----QNISYITV 123 Query: 326 GTKSDL 331 K D+ Sbjct: 124 INKMDI 129 >gi|82595366|ref|XP_725819.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL] gi|23480965|gb|EAA17384.1| GTP binding protein-related [Plasmodium yoelii yoelii] Length = 853 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 32/94 (34%), Positives = 53/94 (56%), Gaps = 3/94 (3%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKK--DVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 +IIRN + I+G N GKS++FN L +K + +IV D P +TRD + +GY ++ Sbjct: 262 KIIRNLPLVSIIGRPNVGKSTIFNRLTRKFQEGSIVLDKP-STRDKFYGKSEWDGYRFEV 320 Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 DT G+ D+ KE + L +E + ++L + Sbjct: 321 VDTGGLIFEDENFSKEIRDQILLALEESSVVLFV 354 Score = 37.0 bits (84), Expect = 6.2, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 6/67 (8%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG----YLVKIS 272 +N I +G N GKSS+ N + + IV+ I GTT D +ID+ ++G + ++ Sbjct: 542 KNTINISFIGKPNTGKSSILNKILNCNRFIVSPIAGTTID--SIDVLVKGKNDKRMYRLI 599 Query: 273 DTAGIRE 279 DTAGI++ Sbjct: 600 DTAGIQK 606 >gi|91977066|ref|YP_569725.1| GTP-binding protein, HSR1-related [Rhodopseudomonas palustris BisB5] gi|91683522|gb|ABE39824.1| GTP-binding protein, HSR1-related [Rhodopseudomonas palustris BisB5] Length = 434 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 48/144 (33%), Positives = 70/144 (48%), Gaps = 7/144 (4%) Query: 217 RNGYKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDT 274 R Y++V L G++NAGKS+LFN L + DV D+ T D L L G +SDT Sbjct: 198 RVPYRVVALVGYTNAGKSTLFNRLTRADVQ-AADMLFATLDPTLRALSLPHGGKAMLSDT 256 Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF--IGTKSDLY 332 G + T EV ADLIL +++I + + +++D + +G ++D Sbjct: 257 VGFISNLPTQLVAAFRATLEEVLEADLILHVRDIAHEDAEAQDRDVDAVLRQLGVEAD-- 314 Query: 333 STYTEEYDHLISSFTGEGLEELIN 356 S E + I F E LEEL N Sbjct: 315 SGRILEIWNKIDRFEPEQLEELRN 338 >gi|67923219|ref|ZP_00516706.1| Small GTP-binding protein domain:GTP-binding:GTP-binding protein Era [Crocosphaera watsonii WH 8501] gi|67854950|gb|EAM50222.1| Small GTP-binding protein domain:GTP-binding:GTP-binding protein Era [Crocosphaera watsonii WH 8501] Length = 314 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 46/157 (29%), Positives = 74/157 (47%), Gaps = 22/157 (14%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 I+G N GKS+L N L + +AI + + TTR+ L L E + DT GI + Sbjct: 27 IIGRPNVGKSTLMNQLIGQKIAITSPVSQTTRNRLRGILTTEKAQIIFVDTPGIHKPHHS 86 Query: 284 VEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKNID-FIFIG-TKSDL---- 331 + K +K + D+ILL+ + ++K I K ++ I +G KSD Sbjct: 87 LGKIIVKNAKTAINAVDIILLVVDSSTKSGGGDRYIIDLLKTVNQPIILGLNKSDQQPEN 146 Query: 332 -------YSTYTEEYDHLI---SSFTGEGLEELINKI 358 Y++ ++Y+ I S+ TG+GLE L N + Sbjct: 147 YQEIDESYASLIQDYNWPILKFSALTGDGLENLQNSL 183 >gi|312134392|ref|YP_004001730.1| small gtp-binding protein [Caldicellulosiruptor owensensis OL] gi|311774443|gb|ADQ03930.1| small GTP-binding protein [Caldicellulosiruptor owensensis OL] Length = 403 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 53/88 (60%), Gaps = 8/88 (9%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTAGIRE 279 I I G NAGKSSL NA+ + +AIV++ PGTT D + +++ G +V I DTAGI Sbjct: 12 IAIFGKRNAGKSSLINAITNQPIAIVSETPGTTTDPVYKSMEILPLGPVVLI-DTAGI-- 68 Query: 280 TDDIVE--KEGIKRTFLEVENADLILLL 305 DD+ E K +++T + D+ +L+ Sbjct: 69 -DDVGELGKLRVEKTLEVLNKTDIAILV 95 >gi|157804058|ref|YP_001492607.1| GTP-binding protein EngA [Rickettsia canadensis str. McKiel] gi|166225851|sp|A8EZN9|DER_RICCK RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|157785321|gb|ABV73822.1| GTP-binding protein EngA [Rickettsia canadensis str. McKiel] Length = 447 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 47/89 (52%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L+ + AIV ++PG TRD D + + DT G+ E Sbjct: 6 IALVGRPNVGKSTLFNRLSIRKKAIVHNLPGVTRDRKYTDGKIGSCEFLLIDTPGLEENP 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310 + + +++T + ADLI + + S Sbjct: 66 NSMSVRLMEQTTKAILEADLICFMVDCRS 94 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 36/65 (55%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +IVI G NAGKS+ NAL + + G TR+ + ID + +K+ DTAG+R+ Sbjct: 181 QIVISGRPNAGKSTFINALINDERLLTGPEAGITRESIEIDWQYKNNHIKLIDTAGLRKK 240 Query: 281 DDIVE 285 I E Sbjct: 241 STITE 245 >gi|78212431|ref|YP_381210.1| GTP-binding protein Era [Synechococcus sp. CC9605] gi|78196890|gb|ABB34655.1| GTP-binding protein Era [Synechococcus sp. CC9605] Length = 311 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 1/96 (1%) Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 L E R+G+ I ++G N GKS+L N L + VAI + + TTR+ L L E + + Sbjct: 6 LPEDYRSGF-IALIGRPNVGKSTLVNQLVGEKVAITSPVAQTTRNRLRAILTTEVAQMVL 64 Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307 DT GI + ++ + +K + DL++LL E Sbjct: 65 VDTPGIHKPHHLLGERLVKSARSAIGEVDLVVLLLE 100 >gi|312066916|ref|XP_003136497.1| hypothetical protein LOAG_00909 [Loa loa] gi|307768339|gb|EFO27573.1| hypothetical protein LOAG_00909 [Loa loa] Length = 578 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 3/62 (4%) Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 I+ ++ I+G+ N GKSS+ N+L +K V V +PG TR V +DLD +++ D+ Sbjct: 260 IKTSIRVGIVGYPNVGKSSVINSLKRKRVCDVGAVPGITRQVQEVDLDKH---IRLLDSP 316 Query: 276 GI 277 G+ Sbjct: 317 GV 318 >gi|313672925|ref|YP_004051036.1| gtp-binding protein era [Calditerrivibrio nitroreducens DSM 19672] gi|312939681|gb|ADR18873.1| GTP-binding protein Era [Calditerrivibrio nitroreducens DSM 19672] Length = 294 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 47/89 (52%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 I+G NAGKS+L NA+ + V+I++ P TTR + + + + DT GI D Sbjct: 10 IIGRPNAGKSTLLNAILGEKVSIISSKPNTTRTQIRGIYNSKDAQIIFIDTPGIHNAKDN 69 Query: 284 VEKEGIKRTFLEVENADLILLLKEINSKK 312 + K +++ F ++ D++ L E KK Sbjct: 70 INKLMVEKAFETIKMVDIVYFLVEPGEKK 98 >gi|125972566|ref|YP_001036476.1| small GTP-binding protein [Clostridium thermocellum ATCC 27405] gi|256005128|ref|ZP_05430097.1| small GTP-binding protein [Clostridium thermocellum DSM 2360] gi|281416754|ref|ZP_06247774.1| small GTP-binding protein [Clostridium thermocellum JW20] gi|125712791|gb|ABN51283.1| iron-only hydrogenase maturation protein HydF [Clostridium thermocellum ATCC 27405] gi|255990875|gb|EEU00988.1| small GTP-binding protein [Clostridium thermocellum DSM 2360] gi|281408156|gb|EFB38414.1| small GTP-binding protein [Clostridium thermocellum JW20] gi|316941196|gb|ADU75230.1| small GTP-binding protein [Clostridium thermocellum DSM 1313] Length = 400 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 78/155 (50%), Gaps = 12/155 (7%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276 N I G NAGKSS+ NA+ +++AIV+D+ GTT D + ++L V I DT G Sbjct: 10 NRLHIGFFGKRNAGKSSVVNAVTGQNLAIVSDVKGTTTDPVYKAMELLPLGPVVIIDTPG 69 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTK 328 I + + E +KR+ + D+ +L+ + K E+ K+I ++ + K Sbjct: 70 IDDEGTLGEMR-VKRSRQVLNKTDIAVLVIDATCGKSEDDEKLIELFEKKDIKYVVVYNK 128 Query: 329 SDL--YSTYTEEYDHLISSFTGEGLEELINKIKSI 361 +DL + + + +S+ TG + +L KI S+ Sbjct: 129 ADLEGHEETVGDNEIYVSAKTGYNINKLKEKIASL 163 >gi|228470301|ref|ZP_04055205.1| small GTP-binding protein [Porphyromonas uenonis 60-3] gi|228308044|gb|EEK16919.1| small GTP-binding protein [Porphyromonas uenonis 60-3] Length = 398 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 87/171 (50%), Gaps = 25/171 (14%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIR- 278 +IV++G N+GKS+L+N L +++ ++V+D GTT D + +L V + DT G+ Sbjct: 12 RIVLVGQVNSGKSTLYNRLLRQERSLVSDQAGTTTDSVEKLFELPSVGPVLLVDTPGLAD 71 Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP-------KNIDFIFIGTKSDL 331 ET E++ + + L +ADLIL L ++ ++ + P ++ + I ++DL Sbjct: 72 ETPLGAERQRVTQHAL--SSADLILYL--LSCEESLDTPIITALRKASVPTLPIIARADL 127 Query: 332 --YSTYTEEYDHLISSFTG----------EGLEELINKIKSILSNKFKKLP 370 S++ E + ++ F + L+ L+ IK LSN+ + P Sbjct: 128 PEQSSWLERQEEIMRCFGHTPLTLRQDDEKSLDTLLEAIKRTLSNESEPAP 178 >gi|188589655|ref|YP_001921707.1| ferrous iron transport protein B [Clostridium botulinum E3 str. Alaska E43] gi|188499936|gb|ACD53072.1| ferrous iron transport protein B [Clostridium botulinum E3 str. Alaska E43] Length = 587 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 44/84 (52%), Gaps = 9/84 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL--VKISDTAGIRE 279 I +LG+ N GK++LFNAL + V + PG T + EGY+ VKI D GI Sbjct: 4 IALLGNPNVGKTTLFNALTGSN-QYVGNWPGVTVE------KKEGYINNVKIVDLPGIYA 56 Query: 280 TDDIVEKEGIKRTFLEVENADLIL 303 D +E + + FL+ DLIL Sbjct: 57 MDTFSNEEKVAKEFLQNGQVDLIL 80 >gi|187934064|ref|YP_001886748.1| ferrous iron transport protein B [Clostridium botulinum B str. Eklund 17B] gi|187722217|gb|ACD23438.1| ferrous iron transport protein B [Clostridium botulinum B str. Eklund 17B] Length = 587 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 44/84 (52%), Gaps = 9/84 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL--VKISDTAGIRE 279 I +LG+ N GK++LFNAL + V + PG T + EGY+ VKI D GI Sbjct: 4 IALLGNPNVGKTTLFNALTGSN-QYVGNWPGVTVE------KKEGYINDVKIVDLPGIYA 56 Query: 280 TDDIVEKEGIKRTFLEVENADLIL 303 D +E + + FL+ DLIL Sbjct: 57 MDTFSNEEKVAKEFLQNGQVDLIL 80 >gi|317485139|ref|ZP_07944021.1| small GTP-binding domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316923674|gb|EFV44878.1| small GTP-binding domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 432 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 52/90 (57%), Gaps = 4/90 (4%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGIRE 279 I + G N GKSSL NALA + V+IV++ PGTT D + T++ G +V + DTAG+ + Sbjct: 12 IGLFGRRNVGKSSLLNALAAQSVSIVSNTPGTTTDPVEKTLEFAPLGPVVFL-DTAGLDD 70 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEIN 309 ++ + +RT + D+ L++ N Sbjct: 71 EGELGTQR-TERTLAVLPRTDMALVVTAEN 99 >gi|251779526|ref|ZP_04822446.1| ferrous iron transport protein B [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083841|gb|EES49731.1| ferrous iron transport protein B [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 587 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 44/84 (52%), Gaps = 9/84 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL--VKISDTAGIRE 279 I +LG+ N GK++LFNAL + V + PG T + EGY+ VKI D GI Sbjct: 4 IALLGNPNVGKTTLFNALTGSN-QYVGNWPGVTVE------KKEGYINDVKIVDLPGIYA 56 Query: 280 TDDIVEKEGIKRTFLEVENADLIL 303 D +E + + FL+ DLIL Sbjct: 57 MDTFSNEEKVAKEFLQNGQVDLIL 80 >gi|189425186|ref|YP_001952363.1| GTP-binding protein Era [Geobacter lovleyi SZ] gi|259645944|sp|B3E422|ERA_GEOLS RecName: Full=GTPase Era gi|189421445|gb|ACD95843.1| GTP-binding protein Era [Geobacter lovleyi SZ] Length = 296 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 42/156 (26%), Positives = 69/156 (44%), Gaps = 20/156 (12%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 I+G N GKS+L N + + + V+D P TTR+V+ L E + DT GI Sbjct: 13 IIGRPNVGKSTLLNRILGEKIVAVSDKPQTTRNVIRGILSDETSQIVFVDTPGIHTARTR 72 Query: 284 VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNI-------------DFIFIGTKSD 330 + + + V DL+LL+ + K E +F K+I + K Sbjct: 73 INRAMVDAAMTVVTGIDLMLLVVDATQKIEETFIKDICSKAGAPIYLVLNKIDQVTPKEK 132 Query: 331 LYST---YTEEYDH----LISSFTGEGLEELINKIK 359 L++ YT YD IS+ +G +E L++ ++ Sbjct: 133 LFTVIEGYTRLYDFPEIIPISAQSGSNIERLVDLVR 168 >gi|152967059|ref|YP_001362843.1| GTP-binding protein EngA [Kineococcus radiotolerans SRS30216] gi|151361576|gb|ABS04579.1| small GTP-binding protein [Kineococcus radiotolerans SRS30216] Length = 496 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 34/58 (58%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 ++ +LG N GKSS+ N LA + +V GTTRD + ++L G + DTAGIR Sbjct: 237 RVALLGRPNVGKSSMLNKLAGSERVVVHPTAGTTRDPVDEIIELGGRTWRFVDTAGIR 294 Score = 43.1 bits (100), Expect = 0.098, Method: Compositional matrix adjust. Identities = 23/84 (27%), Positives = 41/84 (48%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+L N + + A+V D+PG TRD + + G + DT G Sbjct: 62 LAVVGRPNVGKSTLVNRIIGRREAVVEDVPGVTRDRVAYPANWAGRDFTLVDTGGWEAKA 121 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + + L +E AD ++ + Sbjct: 122 EGLNLAVADQAELAIELADAVMFV 145 >gi|307292854|ref|ZP_07572700.1| GTP-binding protein Era [Sphingobium chlorophenolicum L-1] gi|306880920|gb|EFN12136.1| GTP-binding protein Era [Sphingobium chlorophenolicum L-1] Length = 302 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 48/175 (27%), Positives = 80/175 (45%), Gaps = 27/175 (15%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRET 280 I I+G NAGKS+L NAL + VAI + TTR V+ + ++ + +V + DT GI Sbjct: 13 IAIVGAPNAGKSTLVNALVGQKVAITSPKAQTTRTRVMGVAIEGDAQMVLV-DTPGIFAP 71 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE----INSKKE------ISFPKNIDFIF----IG 326 +++ ++ + + ADLI L+ + + +K E + P+ I I Sbjct: 72 KRRLDRAMVQAAWGGAQGADLIALVVDGKAGLGAKMEPIVSALAARPEKKWLILNKVDIA 131 Query: 327 TKSDLYSTYTEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374 K L Y+ L +S+ TG+GL EL K+ + + P+ P Sbjct: 132 IKEKLLVHTQRLYEQLDIAETFFVSAATGDGLPEL----KTAFARAMPEGPWHFP 182 >gi|308176963|ref|YP_003916369.1| GTP-binding protein EngA [Arthrobacter arilaitensis Re117] gi|307744426|emb|CBT75398.1| GTP-binding protein EngA [Arthrobacter arilaitensis Re117] Length = 510 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 61/115 (53%), Gaps = 8/115 (6%) Query: 208 SQGKLGEIIRNG--YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE 265 + G +I +G ++ ++G N GKSSL N +A + +V + GTTRD + ++L Sbjct: 234 AHSAFGGMIPSGGPRRVALIGRPNVGKSSLLNKVAGSERVVVDEYAGTTRDPVDELVELG 293 Query: 266 GYLVKISDTAGIRETDDIV---EKEGIKRTFLEVENADLILLL---KEINSKKEI 314 G + + DTAGIR + + RT +E A++ ++L EI S++++ Sbjct: 294 GEIWRFVDTAGIRRRQHMAVGSDYYASLRTQTALEKAEVAVILLAANEIISEQDV 348 Score = 43.1 bits (100), Expect = 0.092, Method: Compositional matrix adjust. Identities = 24/84 (28%), Positives = 39/84 (46%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+L N + + A+V D PG TRD ++ + G I DT G Sbjct: 75 LAVIGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYSAEWMGRPFTIVDTGGWEHDA 134 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + + + AD IL + Sbjct: 135 KGIHASVADQAEIAADVADAILFV 158 >gi|253577825|ref|ZP_04855097.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251850143|gb|EES78101.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 402 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 81/165 (49%), Gaps = 18/165 (10%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDTA 275 N I I G +N+GKSS N + + V+IV D+ GTT D + +++ G + I DTA Sbjct: 12 NRLHIGIFGKTNSGKSSFINTFSGQKVSIVADVAGTTTDPVYKPMEIYPLGPCI-IIDTA 70 Query: 276 GIRETDDIVEKEGIKRTFLEVENADL-ILLLKEINSKKEISF-----PKNIDFIFIGTKS 329 G + ++ I++T L + +L I+L E +E+ + + I + K+ Sbjct: 71 GFDDEGELGALR-IEKTSLAAQKTELAIILFCEDEMVQELKWYNYFKKRQTPVIPVLGKA 129 Query: 330 DLYSTYTEEY-DHLISSFTGEGL-------EELINKIKSILSNKF 366 DLY+ +EY +I TGE + E I K+K +L+ K Sbjct: 130 DLYTQEQKEYLIQMIQKNTGETVCPVSSETGEGIRKLKELLAEKI 174 >gi|289641297|ref|ZP_06473463.1| small GTP-binding protein [Frankia symbiont of Datisca glomerata] gi|289508895|gb|EFD29828.1| small GTP-binding protein [Frankia symbiont of Datisca glomerata] Length = 457 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 35/59 (59%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 ++ +LG N GKSSL N LA ++V D+ GTTRD + + + G K DTAG+R Sbjct: 196 RVALLGKPNVGKSSLLNRLAGTQRSLVHDVAGTTRDPVDELVTVGGETWKFVDTAGLRR 254 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 30/55 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 + ++G N GKS+L N + + A+V D+PG TRD + D G + DT G Sbjct: 23 LAVVGRPNVGKSTLVNRILGRRAAVVEDVPGVTRDRVAYDATWNGRRFVVVDTGG 77 >gi|7595274|gb|AAF64397.1|AF148553_1 hypothetical protein [Thiobacillus denitrificans] Length = 281 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 52/86 (60%), Gaps = 5/86 (5%) Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGI 289 S+L NAL ++ I D PGTTRD + ++ + G + DTAG+R + VEK + Sbjct: 1 STLVNALVGEERVIAFDQPGTTRDSIYVEFERGGKPYVLIDTAGVRRKGKVFETVEKFSV 60 Query: 290 KRTFLEVENADLILLLKEINSKKEIS 315 +T +E+A++++L+ +++++ IS Sbjct: 61 IKTLQAIEDANVVVLV--LDARENIS 84 >gi|300825513|ref|ZP_07105577.1| small GTP-binding protein [Escherichia coli MS 119-7] gi|300522036|gb|EFK43105.1| small GTP-binding protein [Escherichia coli MS 119-7] Length = 290 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 39/108 (36%), Positives = 56/108 (51%), Gaps = 4/108 (3%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L +S HI + L ++ + I I+G S AGKSSL NAL + +V V+D+ TR+V Sbjct: 17 LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 75 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305 L G + I+D G+ E+ D E E + R L DL+L L Sbjct: 76 RFRLSGHGCSMVITDLPGVGESRDRDAEYEALYRDIL--PELDLVLWL 121 >gi|51246230|ref|YP_066114.1| GTP-binding protein [Desulfotalea psychrophila LSv54] gi|50877267|emb|CAG37107.1| related to predicted GTP-binding protein [Desulfotalea psychrophila LSv54] Length = 415 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 45/146 (30%), Positives = 71/146 (48%), Gaps = 17/146 (11%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDD 282 I G +N GKS+ N L +DVAI + PGTT DV+ ++L V + DTAG+ + Sbjct: 17 IFGRTNVGKSTFLNFLVDQDVAIASSQPGTTTDVVEKSMELLPLGPVVLHDTAGLDDESA 76 Query: 283 I--VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF---IGTKSDLYSTYTE 337 + + E + F V DL++LL + N EI +FI+ +G K L + Sbjct: 77 LGHLRTEKTRAVFARV---DLLILLIQPNQWGEIE-----EFIYQTALGKKKPLL-VVSS 127 Query: 338 EYDHLISSFTGEGLEELINKIKSILS 363 YD IS + + E+ + +L+ Sbjct: 128 HYD--ISPLSPQFRAEMATRRLHLLT 151 >gi|238064002|ref|ZP_04608711.1| small GTP-binding protein [Micromonospora sp. ATCC 39149] gi|237885813|gb|EEP74641.1| small GTP-binding protein [Micromonospora sp. ATCC 39149] Length = 466 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 30/55 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 + ++G N GKS+L N + + A+V DIPG TRD + D G + DT G Sbjct: 26 VAVVGRPNVGKSTLVNRIIGRRQAVVEDIPGVTRDRVPYDAQWSGRAFTVVDTGG 80 Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 58/104 (55%), Gaps = 9/104 (8%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R ++ ++G N GKSSL N + ++ A+V + GTT D + +++ G ++ DTAG Sbjct: 195 RGPRRVALVGRPNVGKSSLLNRFSGEERAVVDSVAGTTVDPVDSLVEIGGETWQLVDTAG 254 Query: 277 IRETDDIVEKEGIK-----RTFLEVENADLILLLKEINSKKEIS 315 +R+ + + G + RT +E A++ ++L ++S + IS Sbjct: 255 LRKR--VGKASGTEYYASLRTASAIEAAEVAVVL--LDSSEPIS 294 >gi|332706767|ref|ZP_08426828.1| ferrous iron transporter FeoB [Lyngbya majuscula 3L] gi|332354651|gb|EGJ34130.1| ferrous iron transporter FeoB [Lyngbya majuscula 3L] Length = 617 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 1/85 (1%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ +LG N GKS+ FN + A V + PG T D+L ++ L G + D GI + Sbjct: 20 RVALLGMPNTGKSTFFNRITGTS-AHVGNWPGITVDLLQANVQLNGEPTEFVDLPGIYDL 78 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 + + E I +TFLE DL +++ Sbjct: 79 NGFSDDEKIVQTFLENFAVDLFIIV 103 >gi|227503688|ref|ZP_03933737.1| GTP-binding protein EngA [Corynebacterium accolens ATCC 49725] gi|227075724|gb|EEI13687.1| GTP-binding protein EngA [Corynebacterium accolens ATCC 49725] Length = 527 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 43/84 (51%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKSSL N + A+V D PG TRD ++ D G + DT G Sbjct: 93 VAIVGRPNVGKSSLVNRFLGRREAVVEDHPGVTRDRVSYVADWNGQRFIVQDTGGWDPNV 152 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + ++ L ++ AD+I+++ Sbjct: 153 KGMHADIARQAELAMDTADVIVMV 176 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 37/59 (62%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 ++ ++G N GKSSL N L ++ ++V ++ GTT D + + L+ L K DTAG+R+ Sbjct: 265 RVALVGRPNVGKSSLLNKLTSEERSVVDNVAGTTVDPVDSLVQLDEQLWKFIDTAGLRK 323 >gi|210621736|ref|ZP_03292785.1| hypothetical protein CLOHIR_00730 [Clostridium hiranonis DSM 13275] gi|210154618|gb|EEA85624.1| hypothetical protein CLOHIR_00730 [Clostridium hiranonis DSM 13275] Length = 657 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 10/85 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL---VKISDTAGIR 278 I +LG+ N GK+++FN L + V + PG T + EG+L +KI D GI Sbjct: 4 IALLGNPNVGKTTVFNLLTGSN-QYVGNWPGVTIE------KKEGFLEDDIKIVDLPGIY 56 Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303 D +E + ++FLE E+ DLIL Sbjct: 57 AMDTFSNEEKVSKSFLEKEDVDLIL 81 >gi|302866909|ref|YP_003835546.1| ribosome-associated GTPase EngA [Micromonospora aurantiaca ATCC 27029] gi|315506749|ref|YP_004085636.1| ribosome-associated gtpase enga [Micromonospora sp. L5] gi|302569768|gb|ADL45970.1| ribosome-associated GTPase EngA [Micromonospora aurantiaca ATCC 27029] gi|315413368|gb|ADU11485.1| ribosome-associated GTPase EngA [Micromonospora sp. L5] Length = 468 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 30/55 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 + ++G N GKS+L N + + A+V DIPG TRD + D G + DT G Sbjct: 28 VAVVGRPNVGKSTLVNRIIGRRQAVVEDIPGVTRDRVPYDAQWNGRAFTVVDTGG 82 Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust. Identities = 31/104 (29%), Positives = 58/104 (55%), Gaps = 9/104 (8%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R ++ ++G N GKSSL N + ++ A+V + GTT D + +++ G ++ DTAG Sbjct: 197 RGPRRVALVGRPNVGKSSLLNRFSGEERAVVDSVAGTTVDPVDSLVEIGGETWQLVDTAG 256 Query: 277 IRETDDIVEKEGIK-----RTFLEVENADLILLLKEINSKKEIS 315 +R+ + + G + RT +E A++ ++L I+S + IS Sbjct: 257 LRKR--VGKASGTEYYASLRTASAIEAAEVAVVL--IDSSEVIS 296 >gi|120404249|ref|YP_954078.1| GTP-binding protein EngA [Mycobacterium vanbaalenii PYR-1] gi|166225829|sp|A1TA72|DER_MYCVP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|119957067|gb|ABM14072.1| small GTP-binding protein [Mycobacterium vanbaalenii PYR-1] Length = 470 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/84 (27%), Positives = 43/84 (51%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+L N + + A+V D+PG TRD ++ D G + DT G Sbjct: 34 VAVVGRPNVGKSTLVNRILGRREAVVQDVPGVTRDRVSYDASWSGQRFMVQDTGGWEPDA 93 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 +++ ++ + + AD I+ + Sbjct: 94 KGLQQLVAEQASVAMRTADAIIFV 117 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 38/59 (64%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 ++ ++G N GKSSL N L+ + ++V D+ GTT D + ++++G L + DTAG+R Sbjct: 207 RVALVGKPNVGKSSLLNRLSGDERSVVHDVAGTTVDPVDSLIEMDGKLWRFVDTAGLRR 265 >gi|320106113|ref|YP_004181703.1| GTP-binding protein Era [Terriglobus saanensis SP1PR4] gi|319924634|gb|ADV81709.1| GTP-binding protein Era [Terriglobus saanensis SP1PR4] Length = 349 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 31/102 (30%), Positives = 55/102 (53%), Gaps = 13/102 (12%) Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE---------- 265 +R+G+ + I+G NAGKS+L NAL + +AIVT P TTR+ + L+L Sbjct: 3 LRSGF-VSIVGRPNAGKSTLLNALLGEKIAIVTHKPQTTRNRILGVLELPIRKKAAKDPG 61 Query: 266 --GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 V + DT G+ + ++K ++ + +E+ D++L + Sbjct: 62 RGAAQVVLVDTPGVHKPSSHLDKRMMQEVYDALESRDVVLFI 103 >gi|298372228|ref|ZP_06982218.1| GTP-binding protein [Bacteroidetes oral taxon 274 str. F0058] gi|298275132|gb|EFI16683.1| GTP-binding protein [Bacteroidetes oral taxon 274 str. F0058] Length = 402 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 2/85 (2%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI-SDTAGIRET 280 I ILG N+GKSSL N + + A+V+D GTT DV++ ++L G + DT G + Sbjct: 14 ITILGRVNSGKSSLLNTITGQQSAVVSDTAGTTTDVVSKAMELRGIGACLFVDTPGF-DD 72 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 I+ K+ ++ +E AD+ +L+ Sbjct: 73 RSILGKQRTEQIHKALERADIAILM 97 >gi|325280072|ref|YP_004252614.1| GTP-binding protein Era-like-protein [Odoribacter splanchnicus DSM 20712] gi|324311881|gb|ADY32434.1| GTP-binding protein Era-like-protein [Odoribacter splanchnicus DSM 20712] Length = 304 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 41/139 (29%), Positives = 73/139 (52%), Gaps = 7/139 (5%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 I+G+ N GKS+L N L + ++I+T TTR + ++ + Y + SDT G+ + Sbjct: 20 IVGNPNVGKSTLMNRLVGEKISIITSKSQTTRHRIKGIVNTDDYQIVFSDTPGVVKPSYK 79 Query: 284 VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI 343 +++ ++ + + +AD+IL + ++ E KN+DFI KSD+ + I Sbjct: 80 MQEYMLEFSKSALVDADIILYVTDVVENIE----KNLDFIDKVNKSDIPVLLVI---NKI 132 Query: 344 SSFTGEGLEELINKIKSIL 362 T E LE L +K KS++ Sbjct: 133 DLTTQEKLEALFDKWKSLI 151 >gi|118444403|ref|YP_877886.1| GTP-binding protein [Clostridium novyi NT] gi|118134859|gb|ABK61903.1| GTP-binding protein [Clostridium novyi NT] Length = 594 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 67/223 (30%), Positives = 103/223 (46%), Gaps = 39/223 (17%) Query: 218 NGYKIVILGHSNAGKSSLFNALAK---------KDVAIVTDIPGTTRDVLTIDLDL-EGY 267 N KI ++G++NAGKS+L N L + K+ D+ T DV T L L + Sbjct: 362 NVPKISLVGYTNAGKSTLRNKLCEIASPKDVVDKETVFEADMLFATLDVTTRALVLPDNR 421 Query: 268 LVKISDTAG-IRE-TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFI 325 LV ++DT G IR+ D+V E K T EV N+DL+L + + +SK + ++F+ Sbjct: 422 LVTLTDTVGFIRKLPHDLV--EAFKSTLEEVVNSDLLLHVVDSSSKDAYKQIEAVNFVLE 479 Query: 326 GTKS-----------------DLYSTYTEEYDHL----ISSFTGEGLEELINKIKSILSN 364 +S + E++++L IS+ L+ L+N I + L N Sbjct: 480 ELESINKPMILLLNKIDKADKEQLEGLKEKFNNLKVLEISAKDNLNLDTLLNDICTALPN 539 Query: 365 KFKKLPFSIP-SHKRHLYHLSQTVRYLEMASLNEKDCGLDIIA 406 KK+ F IP S + L + + LE KD G IIA Sbjct: 540 PLKKVEFLIPYSDSASVAMLHRNGKVLEEEY---KDNGTRIIA 579 >gi|289450697|ref|YP_003475263.1| GTP-binding protein Era [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289185244|gb|ADC91669.1| GTP-binding protein Era [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 563 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 29/92 (31%), Positives = 54/92 (58%), Gaps = 1/92 (1%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273 ++I++G+ + I+G NAGKS+L NA++ + +AIV+ TTR+ + + G + D Sbjct: 257 QLIKSGF-VSIVGRPNAGKSTLLNAISGQHLAIVSRKAQTTRNNIRSIYNARGVQMIFID 315 Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 T G+ E D + K + + N+D++LL+ Sbjct: 316 TPGLHEPDTELGKYMQEAAKKALSNSDILLLM 347 >gi|172035490|ref|YP_001801991.1| GTP-binding protein, HSR1-related [Cyanothece sp. ATCC 51142] gi|57864828|gb|AAW57003.1| iron(II)transporter [Cyanothece sp. ATCC 51142] gi|171696944|gb|ACB49925.1| GTP-binding protein, HSR1-related [Cyanothece sp. ATCC 51142] Length = 208 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 57/120 (47%), Gaps = 5/120 (4%) Query: 209 QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL 268 QGK E++ G I ++G N GKS LFN L V++ PGTT + + + G Sbjct: 30 QGKSPEVVSQG-TIALVGSPNVGKSLLFNVLTGA-YTTVSNYPGTTVEASRNYITIAGKT 87 Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTK 328 + I DT G+ + E+E R L E+ DL + + K +S N+ F + T+ Sbjct: 88 ITIIDTPGMYSLIPMTEEERFSRELLFKESLDLAV---HVIDAKNLSRMLNLTFQLMETQ 144 >gi|257463915|ref|ZP_05628301.1| GTP-binding protein [Fusobacterium sp. D12] gi|317061442|ref|ZP_07925927.1| GTP-binding protein [Fusobacterium sp. D12] gi|313687118|gb|EFS23953.1| GTP-binding protein [Fusobacterium sp. D12] Length = 400 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 75/141 (53%), Gaps = 24/141 (17%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276 N I G NAGKSSLFN L +D ++V+ GTT D + ++L GY V++ DTAG Sbjct: 9 NRKHIAFFGKRNAGKSSLFNLLLGEDFSLVSKQLGTTTDPVYKAMELVGYGPVRLIDTAG 68 Query: 277 IRETDDIVE--KEGIKRTFLEVENADLILLLKEINSKKEIS----------FPK-NIDFI 323 + DDI E + +K++ ++ D+ + + ++S +E++ F + +I ++ Sbjct: 69 L---DDIGELGELRVKKSKEVLQKIDMAIYV--LDSSQEVTEEERKEAKRLFQRFHIPYV 123 Query: 324 FIGTKSD-----LYSTYTEEY 339 F+ K D L + + E+Y Sbjct: 124 FVWNKRDMVGEILEAEWKEKY 144 >gi|254561470|ref|YP_003068565.1| GTP-binding protein [Methylobacterium extorquens DM4] gi|254268748|emb|CAX24709.1| GTP-binding protein [Methylobacterium extorquens DM4] Length = 326 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 52/191 (27%), Positives = 87/191 (45%), Gaps = 32/191 (16%) Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267 +QG+ E R G+ + ++G NAGKS+L NAL V+IV+ TTR L + +EG+ Sbjct: 23 AQGQPREETRAGF-VALIGVPNAGKSTLLNALVGAKVSIVSRKVQTTR-ALVRGIVMEGH 80 Query: 268 L-VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK-------------- 312 + + DT GI +++ + + +AD I LL I+++K Sbjct: 81 AQIVLVDTPGIFAPKRRLDRAMVHSAWSGAADADAICLL--IDARKGVDEEVETILRRLP 138 Query: 313 EISFPK-----NIDFI----FIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363 E+ PK ID I + + L + E LIS+ G+G+ +L + L+ Sbjct: 139 EVKRPKILILNKIDLIARERLLELVAKLNAMVPFEDTFLISALKGDGIADL----RKALA 194 Query: 364 NKFKKLPFSIP 374 + P+ P Sbjct: 195 ARMPPSPWLYP 205 >gi|254818899|ref|ZP_05223900.1| GTP-binding protein EngA [Mycobacterium intracellulare ATCC 13950] Length = 466 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 35/158 (22%), Positives = 70/158 (44%), Gaps = 17/158 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+L N + + A+V DIPG TRD ++ D G + DT G Sbjct: 32 VAVVGRPNVGKSTLVNRILGRREAVVQDIPGVTRDRVSYDALWTGRRFVVQDTGGWEPDA 91 Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----------------INSKKEISFPKN-IDFIF 324 +++ ++ + + AD ++L+ + + S K + N +D Sbjct: 92 KGLQQLVAEQASVAMRTADAVILVVDAVVGATSADEAAARILLRSGKPVFLAANKVDSDK 151 Query: 325 IGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362 + + + H IS+ G G+ +L++++ + L Sbjct: 152 AEADAAMLWSLGLGEPHAISAMHGRGVADLLDEVLAAL 189 Score = 43.5 bits (101), Expect = 0.076, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 34/58 (58%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 ++ ++G N GKSSL N LA ++V D+ GTT D + + L + + DTAG+R Sbjct: 204 RVALVGKPNVGKSSLLNKLAGDQRSVVHDVAGTTVDPVDSLIQLGDRVWRFVDTAGLR 261 >gi|327311446|ref|YP_004338343.1| small GTP-binding protein [Thermoproteus uzoniensis 768-20] gi|326947925|gb|AEA13031.1| small GTP-binding protein [Thermoproteus uzoniensis 768-20] Length = 400 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 45/149 (30%), Positives = 72/149 (48%), Gaps = 11/149 (7%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++V+ G+++ GK++LFN L + V P T D + + L G + ++DT G E Sbjct: 187 EVVLTGYTSVGKTTLFNRLTAEH-KYVDGRPFATLDTYSRRISLWGKEIVLTDTIGFIED 245 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYST---YTE 337 V E T EV +ADL+LLL + + +E F + + T D+ ST + E Sbjct: 246 LPPVLIESFYSTLQEVADADLVLLLADASDDEE-EFARELQ-----TSIDVLSTIGVHKE 299 Query: 338 EYDHLISSFTGEGLEELINKIKSILSNKF 366 ++S GL EL+ K +IL F Sbjct: 300 RVLPVLSKVDAVGLPELVRK-AAILRKHF 327 >gi|255325638|ref|ZP_05366735.1| ribosome-associated GTPase EngA [Corynebacterium tuberculostearicum SK141] gi|255297248|gb|EET76568.1| ribosome-associated GTPase EngA [Corynebacterium tuberculostearicum SK141] Length = 526 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 42/84 (50%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKSSL N + A+V D PG TRD ++ D G + DT G Sbjct: 93 VAIVGRPNVGKSSLVNRFLGRREAVVEDHPGVTRDRISYVADWNGQRFLVQDTGGWDPNV 152 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + ++ + +E AD+I+++ Sbjct: 153 KGIHGAIARQAEVAMETADVIVMV 176 Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 37/59 (62%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 ++ ++G N GKSSL N L ++ ++V ++ GTT D + + L+ L K DTAG+R+ Sbjct: 265 RVALVGKPNVGKSSLLNKLTSEERSVVDNVAGTTVDPVDSLVQLDEQLWKFIDTAGLRK 323 >gi|113476532|ref|YP_722593.1| GTP-binding protein Era [Trichodesmium erythraeum IMS101] gi|110167580|gb|ABG52120.1| GTP-binding protein Era [Trichodesmium erythraeum IMS101] Length = 310 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 3/90 (3%) Query: 219 GYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 GYK + I+G N GKS+L N L + VAI + + TTR+ L L + + DT Sbjct: 15 GYKSGFVGIIGRPNVGKSTLMNQLVGQKVAITSPVAQTTRNRLRGILTTQAAQIIFVDTP 74 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLL 305 GI + + K ++ + +++ DL+LL+ Sbjct: 75 GIHKPQHQLGKVLVQNAKVAIQSVDLVLLI 104 >gi|58699336|ref|ZP_00374112.1| GTP-binding protein Era [Wolbachia endosymbiont of Drosophila ananassae] gi|58534148|gb|EAL58371.1| GTP-binding protein Era [Wolbachia endosymbiont of Drosophila ananassae] Length = 128 Score = 47.8 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 33/102 (32%), Positives = 55/102 (53%), Gaps = 5/102 (4%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I G NAGKS+L N++ K +AIVT TTR + V +D+ GI + Sbjct: 9 VTIAGLPNAGKSTLINSIIGKKIAIVTPKVQTTRTQIRGVATCNNTQVVFTDSPGIFSAE 68 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI 323 +EK +K + V+++D+ LLL +++ ++ KNI+ I Sbjct: 69 TKLEKALVKSAWSAVKDSDITLLLVDVS-----NYLKNIERI 105 >gi|70931024|ref|XP_737292.1| hypothetical protein [Plasmodium chabaudi chabaudi] gi|56512559|emb|CAH85924.1| hypothetical protein PC301755.00.0 [Plasmodium chabaudi chabaudi] Length = 113 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 2/85 (2%) Query: 356 NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVS 415 NKIK LS+ K + F +P +RH +L +++ +L N DIIAE ++LA Sbjct: 31 NKIKKNLSSDNKNIYF-LP-FERHKIYLKESLTHLSFVQKNINLVDFDIIAEEIKLAVKP 88 Query: 416 LGKITGCVDVEQLLDIIFSKFCIGK 440 L +I G + EQ+L I FCIGK Sbjct: 89 LHEIIGKISNEQILSNILDTFCIGK 113 >gi|210633084|ref|ZP_03297651.1| hypothetical protein COLSTE_01559 [Collinsella stercoris DSM 13279] gi|210159238|gb|EEA90209.1| hypothetical protein COLSTE_01559 [Collinsella stercoris DSM 13279] Length = 429 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 52/204 (25%), Positives = 87/204 (42%), Gaps = 24/204 (11%) Query: 178 FSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSS 234 F + E + + N I L+ +++ + + R G ++I + G++NAGKSS Sbjct: 165 FGQGESQLEVDRRMIRNRIASLRKELAVVERRRAVQSKSRTGSLAFRIALAGYTNAGKSS 224 Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTF 293 L N L DV + D T D T +L G + I+DT G + E K T Sbjct: 225 LLNRLTGSDV-LAQDKLFATLDPTTRSYELPGGRAITITDTVGFIQKLPHGLVEAFKSTL 283 Query: 294 LEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT----------EEYDHL- 342 EV +ADLIL + +++ + +++D + ++ T E + L Sbjct: 284 SEVRDADLILKVVDVSDEDRDRQIESVDRVLCDVHAESQRALTVYNKIDLLDPSEVERLK 343 Query: 343 --------ISSFTGEGLEELINKI 358 S+ TG G+EEL +I Sbjct: 344 RRHPDALFFSARTGAGIEELRQRI 367 >gi|169837457|ref|ZP_02870645.1| tRNA modification GTPase TrmE [candidate division TM7 single-cell isolate TM7a] Length = 58 Score = 47.8 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 20/40 (50%), Positives = 30/40 (75%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260 ++ ++G N GKS+LFNALA K A+V +I GTTRD+ ++ Sbjct: 14 RVALIGRPNVGKSTLFNALAGKQQALVANIAGTTRDINSV 53 >gi|119716729|ref|YP_923694.1| GTP-binding protein EngA [Nocardioides sp. JS614] gi|119537390|gb|ABL82007.1| small GTP-binding protein [Nocardioides sp. JS614] Length = 461 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 26/58 (44%), Positives = 37/58 (63%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 I I+G N GKSSL N LA ++ A+V ++ GTT D + ++L G + DTAGIR+ Sbjct: 203 IAIVGKPNVGKSSLLNKLAGEERAVVDNVAGTTVDPVDELIELGGKTWRFIDTAGIRK 260 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 31/55 (56%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 + ++G N GKS+L N + + A+V D+PG TRD ++ D G + DT G Sbjct: 29 LAVVGRPNVGKSTLVNRIIGRREAVVEDVPGVTRDRVSYDASWNGRAFTVVDTGG 83 >gi|297801602|ref|XP_002868685.1| GTP-binding family protein [Arabidopsis lyrata subsp. lyrata] gi|297314521|gb|EFH44944.1| GTP-binding family protein [Arabidopsis lyrata subsp. lyrata] Length = 623 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 11/94 (11%) Query: 191 EVLNDIL----FLKN-DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 E+LNDI L N ++S I + KL ++ I+G N GKS+L NAL +++ Sbjct: 291 EMLNDICSQDDALSNENLSDEIDESKLP------LQLAIVGKPNVGKSTLLNALLEEERV 344 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 +V G TRD + + + +G V + DTAG E Sbjct: 345 LVGPEAGLTRDAVRVQFEFQGRTVYLVDTAGWLE 378 >gi|229828496|ref|ZP_04454565.1| hypothetical protein GCWU000342_00558 [Shuttleworthia satelles DSM 14600] gi|229793090|gb|EEP29204.1| hypothetical protein GCWU000342_00558 [Shuttleworthia satelles DSM 14600] Length = 310 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 44/178 (24%), Positives = 83/178 (46%), Gaps = 30/178 (16%) Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISD 273 + ++G+ + ++G N GKS+L N L + +AI ++ P TTR+ + T+ D + + D Sbjct: 11 VTKSGF-VAMIGRPNVGKSTLMNQLIGQKIAITSNKPQTTRNRIQTVYTDPDRGQIVFLD 69 Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK------------KEISFP---- 317 T GI + + + + + +++ DLIL L E +++ ++I P Sbjct: 70 TPGIHQAKNKLGQYMVGVAERSMKDVDLILWLIEPDTRVGGGDRHILKELEQIQIPVFLV 129 Query: 318 -KNIDFIFIGTKSDLYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLP 370 ID + + TY EYD + + +G+G ++LI I F +LP Sbjct: 130 INKIDMVKKEKILAVIDTYRGEYDFDEILPVCARSGDGCKDLIESI-------FSRLP 180 >gi|254431559|ref|ZP_05045262.1| GTP-binding protein Era [Cyanobium sp. PCC 7001] gi|197626012|gb|EDY38571.1| GTP-binding protein Era [Cyanobium sp. PCC 7001] Length = 353 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 43/181 (23%), Positives = 78/181 (43%), Gaps = 36/181 (19%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R+G+ + ++G N GKS+L N L + VAI + + TTR+ L L + + DT G Sbjct: 48 RSGF-VALIGRPNVGKSTLLNQLVGQKVAITSPVAQTTRNRLRAILTTPTAQLVLLDTPG 106 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK------------KEISFPKNI---- 320 I + ++ + +K + D++LLL + + + + P ++ Sbjct: 107 IHKPHHLLGERLVKTARGAIGEVDVVLLLVDGSQRAGRGDGFIVELLRHCRAPVHVALNK 166 Query: 321 -DFI--------------FIGTKSDL-YSTYTEEYD---HLISSFTGEGLEELINKIKSI 361 D + +G + D+ +E D H +S+ TGEG EL+ + S Sbjct: 167 HDLVSGDQAAALAQSYRDLLGGRGDVAMPERSEPLDWPLHPVSALTGEGTAELVEALSSD 226 Query: 362 L 362 L Sbjct: 227 L 227 >gi|284097360|ref|ZP_06385484.1| tRNA modification GTPase trmE [Candidatus Poribacteria sp. WGA-A3] gi|283831125|gb|EFC35111.1| tRNA modification GTPase trmE [Candidatus Poribacteria sp. WGA-A3] Length = 88 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 4/86 (4%) Query: 358 IKSI-LSNKFKKLPFSIPSHKRHLYHLSQTVRYLE--MASLNEKDCGLDIIAENLRLASV 414 I+S+ L + P + + RH L Q +E M SL K+ G + +A ++R A Sbjct: 4 IQSVCLKEGLEATPSVLVTRLRHKASLEQAHCSIEEAMRSLERKESG-ECVALDIRAALD 62 Query: 415 SLGKITGCVDVEQLLDIIFSKFCIGK 440 +LG+ITG V E +LD IF FCIGK Sbjct: 63 ALGEITGAVSTEDILDRIFQDFCIGK 88 >gi|229820636|ref|YP_002882162.1| small GTP-binding protein [Beutenbergia cavernae DSM 12333] gi|229566549|gb|ACQ80400.1| small GTP-binding protein [Beutenbergia cavernae DSM 12333] Length = 495 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 35/59 (59%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 ++ ++G N GKSSL N+L + +V D+ GTTRD + ++L G DTAGIR Sbjct: 235 RVALVGKPNVGKSSLLNSLTGSERVVVDDVAGTTRDPVDELIELGGRPWVFVDTAGIRR 293 Score = 43.5 bits (101), Expect = 0.068, Method: Compositional matrix adjust. Identities = 23/84 (27%), Positives = 41/84 (48%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+L N + + A+V D+PG TRD + + G + DT G Sbjct: 61 LAVIGRPNVGKSTLVNRILGRREAVVQDVPGVTRDRVRYTAEWAGRPFVLVDTGGWEHDA 120 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + ++ + VE AD ++ + Sbjct: 121 RGLHARVAEQAEIAVELADAVMFV 144 >gi|240173132|ref|ZP_04751790.1| GTP-binding protein EngA [Mycobacterium kansasii ATCC 12478] Length = 466 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 36/159 (22%), Positives = 68/159 (42%), Gaps = 19/159 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+L N + + A+V D+PG TRD ++ D G + DT G Sbjct: 32 VAIVGRPNVGKSTLVNRILGRREAVVQDVPGVTRDRVSYDALWSGRRFVVQDTGGWEPDA 91 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSD--- 330 +++ ++ + + AD ++L+ + + I K D Sbjct: 92 KGLQQLVAEQASVAMRTADAVILVVDAGVGATTADEAAARILLRSGKPVFLAANKVDNEK 151 Query: 331 -------LYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362 L+S E H +S+ G G+ +L++++ + L Sbjct: 152 GEADAAALWSLGLGE-PHAVSAMHGRGVADLLDQVLAAL 189 Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 36/58 (62%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 ++ ++G N GKSSL N LA ++V ++ GTT D + +++ G + + DTAG+R Sbjct: 204 RVALVGKPNVGKSSLLNKLAGDQRSVVHEVAGTTVDPVDSLIEMGGKVWRFVDTAGLR 261 >gi|145224077|ref|YP_001134755.1| GTP-binding protein EngA [Mycobacterium gilvum PYR-GCK] gi|315444414|ref|YP_004077293.1| hypothetical protein Mspyr1_28320 [Mycobacterium sp. Spyr1] gi|145216563|gb|ABP45967.1| small GTP-binding protein [Mycobacterium gilvum PYR-GCK] gi|315262717|gb|ADT99458.1| small GTP-binding protein domain/GTP-binding conserved hypothetical protein [Mycobacterium sp. Spyr1] Length = 479 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 38/59 (64%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 ++ ++G N GKSSL N L+ + ++V D+ GTT D + ++++G L + DTAG+R Sbjct: 216 RVALVGKPNVGKSSLLNRLSGDERSVVHDVAGTTVDPVDSLIEMDGKLWRFVDTAGLRR 274 Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 31/55 (56%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 + ++G N GKS+L N + + A+V DIPG TRD ++ D G + DT G Sbjct: 43 LAVVGRPNVGKSTLVNRILGRREAVVQDIPGVTRDRVSYDASWLGQKFVVQDTGG 97 >gi|320353093|ref|YP_004194432.1| GTP-binding protein Era [Desulfobulbus propionicus DSM 2032] gi|320121595|gb|ADW17141.1| GTP-binding protein Era [Desulfobulbus propionicus DSM 2032] Length = 299 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 45/82 (54%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 I+G NAGKS+L N L + +AIVT P TTR+ + + Y + + DT G+ + Sbjct: 13 IIGPPNAGKSTLLNHLLGQKIAIVTPKPQTTRNRIMGIVTGTSYQMILLDTPGLHAAREE 72 Query: 284 VEKEGIKRTFLEVENADLILLL 305 + ++ ++ + AD+IL L Sbjct: 73 MNRQMVRVALESLAEADVILFL 94 >gi|260905263|ref|ZP_05913585.1| GTP-binding protein EngA [Brevibacterium linens BL2] Length = 503 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 3/92 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I ++G N GKSSL N L D +V ++ GTTRD + ++L + DTAGIR Sbjct: 243 RIALVGRPNVGKSSLLNQLIGSDRVLVDNVAGTTRDPVDELIELGDKQWRFVDTAGIRRR 302 Query: 281 DDIVEKE---GIKRTFLEVENADLILLLKEIN 309 RT +E A+L L+L E+ Sbjct: 303 AHQASGADFYAALRTQTALERAELALVLLEVQ 334 Score = 40.4 bits (93), Expect = 0.65, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 30/55 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 + ++G N GKS+L N + + A+V D+PG TRD ++ + + DT G Sbjct: 69 LAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYRAEWNTKEFTLVDTGG 123 >gi|296164609|ref|ZP_06847176.1| ribosome-associated GTPase EngA [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295900028|gb|EFG79467.1| ribosome-associated GTPase EngA [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 466 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 36/167 (21%), Positives = 71/167 (42%), Gaps = 19/167 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+L N + + A+V D+PG TRD ++ D G + DT G Sbjct: 32 VAVVGRPNVGKSTLVNRILGRREAVVQDVPGVTRDRVSYDALWTGRRFVVQDTGGWEPDA 91 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSD--- 330 +++ ++ + + AD ++L+ + + + I K D Sbjct: 92 KGLQQLVAEQASVAMRTADAVILVVDASVGATSADEAAARILLRSGKPVFLAANKVDSEK 151 Query: 331 -------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370 L+S E H +S+ G G+ +L++++ + L + P Sbjct: 152 GEADAAALWSLGLGE-PHAVSAMHGRGVADLLDEVLAALPEVSEAAP 197 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 ++ ++G N GKSSL N LA ++V D+ GTT D + ++L G + + DTAG+R Sbjct: 204 RVALVGKPNVGKSSLLNKLAGDQRSVVHDVAGTTVDPVDSLIELGGKVWRFVDTAGLRR 262 >gi|291301883|ref|YP_003513161.1| small GTP-binding protein [Stackebrandtia nassauensis DSM 44728] gi|290571103|gb|ADD44068.1| small GTP-binding protein [Stackebrandtia nassauensis DSM 44728] Length = 465 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 30/55 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 + ++G N GKS+L N L + A+V D+PG TRD + D G + DT G Sbjct: 25 VAVVGRPNVGKSTLVNRLIGRRQAVVEDVPGVTRDRIAYDAQWNGRKFTVVDTGG 79 Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 ++ ++G N GKSSL N LA +D +V + GTT D + ++L G + DTAG+R+ Sbjct: 198 RVALVGKPNVGKSSLLNRLAGEDRVVVDSVAGTTVDPVDSLIELGGETWQFVDTAGLRK 256 >gi|118618580|ref|YP_906912.1| GTP-binding protein EngA [Mycobacterium ulcerans Agy99] gi|166225828|sp|A0PSX2|DER_MYCUA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|118570690|gb|ABL05441.1| GTP-binding protein, EngA [Mycobacterium ulcerans Agy99] Length = 469 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 41/167 (24%), Positives = 68/167 (40%), Gaps = 26/167 (15%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+L N + + A+V DIPG TRD ++ D G + DT G Sbjct: 32 LAIVGRPNVGKSTLVNRILGRREAVVQDIPGVTRDRVSYDALWNGRRFVVQDTGGWEPDA 91 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN--------SKKEISFPKNIDFIFIGTKSD--- 330 +++ ++ + + AD ++L+ + + I K D Sbjct: 92 KGLQQLVAEQASVAMRTADAVVLVVDATVGATTADEAAARILLRSGKPVFLAANKVDSDK 151 Query: 331 -------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370 L+S E H IS+ G G+ L++ + KKLP Sbjct: 152 AEADAATLWSMGLGE-PHAISAMHGRGVANLLDTV-------LKKLP 190 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 37/59 (62%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 ++ ++G N GKSSL N LA + ++V D+ GTT D + ++L G + + DTAG+R Sbjct: 204 RVALVGKPNVGKSSLLNKLAGDERSVVHDVAGTTVDPVDSLIELGGKVWRFVDTAGLRR 262 >gi|189425524|ref|YP_001952701.1| ferrous iron transporter B [Geobacter lovleyi SZ] gi|189421783|gb|ACD96181.1| ferrous iron transport protein B [Geobacter lovleyi SZ] Length = 657 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 62/127 (48%), Gaps = 4/127 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ ++G+ N GKS LFNAL V V++ PGT+ +V + G ++ DT G+ Sbjct: 16 RVALVGNPNVGKSVLFNALTGSYVT-VSNYPGTSVEVSRGTAVITGQSWQVIDTPGMYAV 74 Query: 281 DDIVEKEGIKRTFLEVENADLIL-LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY 339 I E+E + R L E D++L +L N ++ ++ I I G L +E Sbjct: 75 HTITEEERVAREILLNEKPDVVLHVLDARNLERMLAM--TIQLIEAGLPVVLVVNIMDEA 132 Query: 340 DHLISSF 346 + L SF Sbjct: 133 ERLGLSF 139 >gi|148284571|ref|YP_001248661.1| GTP-binding protein EngA [Orientia tsutsugamushi str. Boryong] gi|229784136|sp|A5CDT2|DER_ORITB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|146740010|emb|CAM80087.1| GTP-binding protein [Orientia tsutsugamushi str. Boryong] Length = 454 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 23/88 (26%), Positives = 49/88 (55%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G N GKS+ NA+ ++ + G TR+ + +D G L+++ DTAG+R+ Sbjct: 189 QLAIVGRPNCGKSTFINAILNEERVLTGPESGLTRNSVEVDWKYCGQLIRLVDTAGVRKK 248 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + + E + TF + A++++++ Sbjct: 249 NAVTQSCELLSVNDTFKTIRFANIVIVM 276 Score = 43.5 bits (101), Expect = 0.066, Method: Compositional matrix adjust. Identities = 50/198 (25%), Positives = 93/198 (46%), Gaps = 22/198 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ET 280 + ++G N GKS+LFN L+ ++ +IV D+PG TRD +L L+ + DT G+ Sbjct: 6 VALVGKPNVGKSTLFNRLSLREKSIVHDLPGITRDRKYAKANLFSDLI-VVDTPGLEFAA 64 Query: 281 DDIVEKEGIKRTFLEVENADL----------ILLLKEINSKKEISFPKNIDFIFIGTKSD 330 +E ++++ + + A++ IL + E + K I + K++ Sbjct: 65 AGSLEFNMMQQSLVAINEANIICFVVDAITGILPIDEECANLIRKHNKQSSTILVINKTE 124 Query: 331 LYSTYTEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHL 383 + Y L IS+ G+G+ EL + I++ILS KK+ ++ + Y+ Sbjct: 125 KPIILDKSYYKLGFSESICISAKHGQGIYELGDIIQNILSED-KKINVLTTTNTKCEYN- 182 Query: 384 SQTVRYLEMASLNEKDCG 401 Q L++A + +CG Sbjct: 183 -QQCPELQLAIVGRPNCG 199 >gi|306836038|ref|ZP_07469028.1| ribosome-associated GTPase EngA [Corynebacterium accolens ATCC 49726] gi|304568065|gb|EFM43640.1| ribosome-associated GTPase EngA [Corynebacterium accolens ATCC 49726] Length = 527 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 43/84 (51%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKSSL N + A+V D PG TRD ++ D G + DT G Sbjct: 93 VAIVGRPNVGKSSLVNRFLGRREAVVEDQPGVTRDRVSYVADWNGQRFIVQDTGGWDPNV 152 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + ++ + ++ AD+I+++ Sbjct: 153 KGMHADIARQAEMAMDTADVIVMV 176 Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 37/59 (62%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 ++ ++G N GKSSL N L ++ ++V ++ GTT D + + L+ L K DTAG+R+ Sbjct: 265 RVALVGRPNVGKSSLLNKLTSEERSVVDNVAGTTVDPVDSLVQLDEQLWKFIDTAGLRK 323 >gi|226322424|ref|ZP_03797942.1| hypothetical protein COPCOM_00195 [Coprococcus comes ATCC 27758] gi|225209146|gb|EEG91500.1| hypothetical protein COPCOM_00195 [Coprococcus comes ATCC 27758] Length = 415 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 68/122 (55%), Gaps = 10/122 (8%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280 I I G NAGKSS+ NA+ +++AIV+D+ GTT D + ++L V I DT G+ + Sbjct: 14 IGIFGRRNAGKSSIINAITGQNLAIVSDVLGTTTDPVPKAMELLPLGPVVIIDTPGLDDI 73 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISF-----PKNIDFIFIGTKSDLY 332 ++ E +K+ + + D+ +L+ + + + +++S K I ++ + KSDL Sbjct: 74 GELGELR-VKKAYQILNKTDIAVLVIDASLGMTPEDLSILKKIQDKKIPYVVVKNKSDLC 132 Query: 333 ST 334 S+ Sbjct: 133 SS 134 >gi|220903650|ref|YP_002478962.1| GTP-binding protein Era [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|254783652|sp|B8J3P9|ERA_DESDA RecName: Full=GTPase Era gi|219867949|gb|ACL48284.1| GTP-binding protein Era [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 307 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 1/87 (1%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R G+ + ++G NAGKS+L NAL + V IVT P TTR+ + L + DT G Sbjct: 7 RCGW-VALMGPPNAGKSTLLNALLGQKVTIVTPKPQTTRNQIVGILTDDDAQTIFMDTPG 65 Query: 277 IRETDDIVEKEGIKRTFLEVENADLIL 303 + + + K I+ + + AD+I+ Sbjct: 66 LTQVRGRLSKTMIQAVWQSLNQADIIM 92 >gi|85708673|ref|ZP_01039739.1| GTPase [Erythrobacter sp. NAP1] gi|85690207|gb|EAQ30210.1| GTPase [Erythrobacter sp. NAP1] Length = 432 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 50/183 (27%), Positives = 84/183 (45%), Gaps = 30/183 (16%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI-SDTAGIRET 280 I ++G++NAGKS+LFN L +V + D+ T D + L G I SDT G Sbjct: 204 IALVGYTNAGKSTLFNRLTGAEV-MAEDLLFATLDPTMRAISLPGVEKAILSDTVGFISD 262 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS------KKEI-------------SFPKNID 321 + T EV AD+I ++++ + KK++ S I Sbjct: 263 LPTQLVAAFRATLEEVTGADIICHVRDMANPAHSAQKKQVMEVLSDLGVVDAESGESEIP 322 Query: 322 FIFIGTKSDLYS--TYTEEYDH-------LISSFTGEGLEELINKIKSILSNKFKKLPFS 372 + + K+DL S T TE + L+S+ +GEG+E +KI +L+ K++ + Sbjct: 323 ILEVWNKADLLSEDTLTELREAAAGQDAVLLSASSGEGVEAFADKIADMLTASAKEVTIT 382 Query: 373 IPS 375 +P+ Sbjct: 383 LPA 385 >gi|322807907|emb|CBZ05482.1| putative GTP-binding protien TM0445 [Clostridium botulinum H04402 065] Length = 399 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 42/126 (33%), Positives = 66/126 (52%), Gaps = 16/126 (12%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276 N I +G +N+GKSSL NA+ +D++IV+ I GTT D ++ ++L V +DTAG Sbjct: 8 NRIHITFIGKTNSGKSSLMNAIIGQDISIVSPIEGTTTDPVSKSMELIPLGPVLFTDTAG 67 Query: 277 IRETDDI--VEKEGIKRTFLEVENA---------DLILLLKEINSKKEISFPKNIDFIFI 325 + + ++ V E T L+ + A D+ L K IN KE +NI +I + Sbjct: 68 LEDNTELGKVRIEKTLNTLLKTDFAIYVMSAKDIDINLYKKTINKFKE----QNISYITV 123 Query: 326 GTKSDL 331 K D+ Sbjct: 124 INKMDI 129 >gi|322378788|ref|ZP_08053217.1| GTP-binding protein Era [Helicobacter suis HS1] gi|321148818|gb|EFX43289.1| GTP-binding protein Era [Helicobacter suis HS1] Length = 311 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 43/165 (26%), Positives = 75/165 (45%), Gaps = 25/165 (15%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-----IDLDLEGYLVKISDTAG 276 I ++G NAGKS+L NAL + + +++ TR +L + D+E +V + DT G Sbjct: 22 IALIGRPNAGKSTLINALVYERLCLISHKANATRKILKAIVPYMQGDIECQMVFL-DTPG 80 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE-----ISFPKNIDFIFIGTKSDL 331 I + ++ + IK+ +E+ DL + L I+ E ++ N I K+D Sbjct: 81 ICKPTKLLNQAMIKQIRHALESCDLAIFLASIHDSPEKYQEFLNLAPNKPHILALNKTDT 140 Query: 332 ------------YSTYTEEYDHLI--SSFTGEGLEELINKIKSIL 362 Y Y+ + LI S+ G LE L+ ++ +L Sbjct: 141 ATPTKILAQIKAYQVYSAHFGALIPLSAAKGHHLEILLEEVAKLL 185 >gi|10176988|dbj|BAB10220.1| GTP-binding protein-like [Arabidopsis thaliana] Length = 514 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 11/94 (11%) Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 N S +VL D ++S I + KL ++ I+G N GKS+L NAL +++ Sbjct: 173 NGSQDDVLTD-----ENLSDEIDESKLP------LQLAIVGKPNVGKSTLLNALLEEERV 221 Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 +V G TRD + + + +G V + DTAG E Sbjct: 222 LVGPEAGLTRDAVRVQFEFQGRTVYLVDTAGWLE 255 >gi|302875565|ref|YP_003844198.1| small GTP-binding protein [Clostridium cellulovorans 743B] gi|307690094|ref|ZP_07632540.1| small GTP-binding protein [Clostridium cellulovorans 743B] gi|302578422|gb|ADL52434.1| small GTP-binding protein [Clostridium cellulovorans 743B] Length = 411 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 58/179 (32%), Positives = 89/179 (49%), Gaps = 19/179 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGIRE 279 I + G NAGKSS+ NA+ + ++IV+DI GTT D + +I++ G V I DTAG+ Sbjct: 14 IALFGKRNAGKSSVINAITNQQLSIVSDIEGTTTDPVYKSIEILPIGPCV-IIDTAGL-- 70 Query: 280 TDDIVEKEGIKRT-FLEVENADLILLLKEINSK------KEISF---PKNIDFIFIGTKS 329 DD+ E ++R LEV N I L+ ++K KEI K I + + K Sbjct: 71 -DDVGELGDLRRNKTLEVLNKTDIALIVADSTKGITGYDKEIIAEVKKKKIPLMILMNKI 129 Query: 330 DLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFK-KLPFSIPSHKRHLYHLSQTV 387 D + E ++L F E L+ ++ + + N+ K K+ F IP K + L V Sbjct: 130 DERNFEVNEIENLKKEFDCEVLK--VSAVTKVGINEVKEKISFLIPQDKENFRLLEGLV 186 >gi|86146683|ref|ZP_01065004.1| putative GTPase YlqF [Vibrio sp. MED222] gi|85835530|gb|EAQ53667.1| putative GTPase YlqF [Vibrio sp. MED222] Length = 311 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 56/104 (53%), Gaps = 13/104 (12%) Query: 178 FSEEEDVQNF----SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233 F +E+ V+ S+KE +N ++ L ++ H Q +G+ IR +I+G N GKS Sbjct: 75 FEKEQGVKAIAITTSAKEEVNHVMELVRKLAPHREQ--MGKNIRT----MIMGIPNVGKS 128 Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 ++ N LA + +A+ + P TR I+L G + +SDT GI Sbjct: 129 TIINCLAGRTIAVTGNQPAVTRRQQRINLQ-NGVI--LSDTPGI 169 >gi|84684892|ref|ZP_01012792.1| GTP-binding protein HflX [Maritimibacter alkaliphilus HTCC2654] gi|84667227|gb|EAQ13697.1| GTP-binding protein HflX [Rhodobacterales bacterium HTCC2654] Length = 427 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 48/179 (26%), Positives = 83/179 (46%), Gaps = 29/179 (16%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRET 280 + ++G++NAGKS+LFN + +V + D+ T D +DL G V +SDT G Sbjct: 207 VALVGYTNAGKSTLFNRMTGAEV-MAKDMLFATLDPTMRGVDLPGGRTVILSDTVGFISD 265 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK-------------KEISFPKNIDFIFIGT 327 + T EV ADLIL +++I +++ +++ I + Sbjct: 266 LPTQLVAAFRATLEEVLGADLILHVRDIAHDETQEQAEDVLAILEDLGVDEDVPLIEVWN 325 Query: 328 KSD--------LYSTYTEEYDHLI--SSFTGEGLEELINKIKSILSNKFKK----LPFS 372 K D Y T + D ++ S++TGEG++ L I + LS + ++ +PFS Sbjct: 326 KIDKLDDQTRAAYLTQADRTDEVVAMSAWTGEGVDALYPAIDAALSVETREEDLLIPFS 384 >gi|311739376|ref|ZP_07713211.1| ribosome-associated GTPase EngA [Corynebacterium pseudogenitalium ATCC 33035] gi|311305192|gb|EFQ81260.1| ribosome-associated GTPase EngA [Corynebacterium pseudogenitalium ATCC 33035] Length = 526 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 42/84 (50%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKSSL N + A+V D PG TRD ++ D G + DT G Sbjct: 93 VAVVGRPNVGKSSLVNRFLGRREAVVEDHPGVTRDRISYVADWNGQRFLVQDTGGWDPNV 152 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + ++ + +E AD+I+++ Sbjct: 153 KGIHAAIARQAEVAMETADVIVMV 176 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 31/100 (31%), Positives = 58/100 (58%), Gaps = 9/100 (9%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ ++G N GKSSL N L ++ ++V ++ GTT D + + L+ L K DTAG+R+ Sbjct: 265 RVALVGKPNVGKSSLLNKLTSEERSVVDNVAGTTVDPVDSLVQLDDQLWKFIDTAGLRKK 324 Query: 281 DDIVEKEGIK-----RTFLEVENADLILLLKEINSKKEIS 315 + +G + RT ++ A++ ++L I++ +EIS Sbjct: 325 --VKNAQGHEYYASLRTRGVIDAAEVCIML--IDASEEIS 360 >gi|148381522|ref|YP_001256063.1| GTP-binding protein [Clostridium botulinum A str. ATCC 3502] gi|153931685|ref|YP_001385896.1| GTP-binding protein [Clostridium botulinum A str. ATCC 19397] gi|153934957|ref|YP_001389303.1| GTP-binding protein [Clostridium botulinum A str. Hall] gi|148291006|emb|CAL85143.1| putative ATP/GTP-binding protein [Clostridium botulinum A str. ATCC 3502] gi|152927729|gb|ABS33229.1| GTP-binding protein [Clostridium botulinum A str. ATCC 19397] gi|152930871|gb|ABS36370.1| GTP-binding protein [Clostridium botulinum A str. Hall] Length = 399 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 42/125 (33%), Positives = 65/125 (52%), Gaps = 16/125 (12%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276 N I +G +N+GKSSL NA+ +D++IV+ I GTT D ++ ++L V +DTAG Sbjct: 8 NRIHITFIGKTNSGKSSLMNAIIGQDISIVSPIEGTTTDPVSKSMELIPLGPVLFTDTAG 67 Query: 277 IRETDDI--VEKEGIKRTFLEVENA---------DLILLLKEINSKKEISFPKNIDFIFI 325 + + ++ V E T L+ + A D+ L K IN KE +NI +I + Sbjct: 68 LEDNTELGKVRIEKTLNTLLKTDFAIYVMSAKDIDINLYKKTINKFKE----QNISYITV 123 Query: 326 GTKSD 330 K D Sbjct: 124 INKMD 128 >gi|72390988|ref|XP_845788.1| GTP-binding protein [Trypanosoma brucei TREU927] gi|62359296|gb|AAX79737.1| GTP-binding protein, putative [Trypanosoma brucei] gi|70802324|gb|AAZ12229.1| GTP-binding protein, putative [Trypanosoma brucei brucei strain 927/4 GUTat10.1] Length = 576 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 39/131 (29%), Positives = 59/131 (45%), Gaps = 19/131 (14%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVA-----IVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 +I I+G N+GKSSLFN L + +V D G TRD + LEG I DT Sbjct: 109 RIAIVGRMNSGKSSLFNLLRLEPTVPGRSNVVRDFDGITRDSVEGQAQLEGMHFTIIDTP 168 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFP-----KNIDFIFIGT 327 G +V+ ++ F VE AD + + ++ +E+S K++ + + Sbjct: 169 G------MVQGRMVEEAFRTVETADAAIFVTAVDEDIMPEELSLMQYLHLKHMPVVLLAN 222 Query: 328 KSDLYSTYTEE 338 K DL EE Sbjct: 223 KMDLIQEEEEE 233 Score = 40.0 bits (92), Expect = 0.80, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 33/57 (57%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 +I I+G +N+GKSSL N L + D +TRD + + +G +K+ DTAG+ Sbjct: 309 RIAIVGRTNSGKSSLVNRLVGFERNRAVDEKNSTRDPVELPCSYKGRKLKLIDTAGL 365 >gi|256384053|gb|ACU78623.1| GTP-binding protein Era [Mycoplasma mycoides subsp. capri str. GM12] gi|256384885|gb|ACU79454.1| GTP-binding protein Era [Mycoplasma mycoides subsp. capri str. GM12] gi|296456013|gb|ADH22248.1| GTP-binding protein Era [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 301 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 48/170 (28%), Positives = 84/170 (49%), Gaps = 31/170 (18%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTIDLDLEGYLVKISDTAGI--- 277 + I+G N GKS+L N L + ++IVT+ P TTR ++ I + Y + DT G+ Sbjct: 9 VSIIGRPNVGKSTLLNKLIGEKISIVTNKPQTTRNNIRGILTKKDQYQIVFIDTPGVHTS 68 Query: 278 -RETDDIVEKEGIKRTFLEVENADLILLLK---EINSKKEISFPKNIDF-----IFIGTK 328 ++ D + +K T ++ D+IL L E+ K ++ K I+ I + TK Sbjct: 69 KKQLDKFLNTSALKST----KDVDVILFLAPSDEVIGKNDLFLLKQIENLDVFKILVITK 124 Query: 329 SDL------------YSTYTEEYDHLI--SSFTGEGLEELINKIKSILSN 364 +D +S+Y +++D +I SS T +E+L+ I + LS+ Sbjct: 125 ADSVTKEQLILKANEWSSYQDQFDEIIITSSITNLNIEKLLELIVNNLSD 174 >gi|83319405|ref|YP_424480.1| GTP-binding protein Era [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|83283291|gb|ABC01223.1| GTP-binding protein Era [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 301 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 49/171 (28%), Positives = 85/171 (49%), Gaps = 24/171 (14%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTIDLDLEGYLVKISDTA 275 ++G+ + I+G N GKS+L N L + ++IVT+ P TTR ++ I + Y + DT Sbjct: 5 KSGF-VSIIGRPNVGKSTLLNKLIGEKISIVTNKPQTTRNNIRGILTKKDKYQIVFIDTP 63 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLK---EINSKKEISF---PKNIDF--IFIGT 327 G+ T ++K ++ D+IL L E+ K ++ KN+D I + T Sbjct: 64 GVHTTKKQLDKFLNTSALKSTKDVDVILFLAPSDEVIGKNDLFLLKQIKNLDVFKILVIT 123 Query: 328 KSD------------LYSTYTEEYDHLI--SSFTGEGLEELINKIKSILSN 364 K+D +S Y +++D +I SS T +E+L+ I + LS+ Sbjct: 124 KADNVTKEQLILKAKEWSAYQDQFDEIIITSSLTNLNIEKLLELIVNNLSD 174 >gi|71892302|ref|YP_278036.1| GTP-binding protein EngA [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|71796408|gb|AAZ41159.1| putative GTP-binding protein [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 471 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 81/169 (47%), Gaps = 31/169 (18%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI---- 277 I ++G N GKS+LFN L A++++ PG TRD + + + DT GI Sbjct: 5 ITLIGQKNVGKSTLFNKLTHTHDALISNYPGLTRDRQYGYFQCKQFKSILIDTGGIDKFC 64 Query: 278 -RETDDIVEKEGIKRTFLEVENADLILLLKE------------INSKKEISFPKNIDFIF 324 +T++I + +T L ++ AD++L + + N K+I KNI F+ Sbjct: 65 STKTENI-QSYVTYQTILAMQEADILLFVMDRQSVGTSINNDIFNFLKKIK--KNI-FVV 120 Query: 325 IGTKSDL-YSTYTEEYDH---------LISSFTGEGLEELINKIKSILS 363 I ++ + +T +D+ IS+ G G++ L+ KI S++S Sbjct: 121 INKIDNIPHHIHTMIWDYCSFGIKNIIFISAIHGHGIDNLLEKISSLIS 169 Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust. Identities = 41/162 (25%), Positives = 74/162 (45%), Gaps = 27/162 (16%) Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DD 282 G N+GKS+ N + + I PGTTR+ + + + + + DTAG+++ D+ Sbjct: 211 GRPNSGKSTFVNHILGETRMITCSTPGTTRNCIHMPIMYDKQKYILIDTAGVQKNKRIDN 270 Query: 283 IVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPKNI-----DFIFIGTKSDLYS- 333 + E+ I +TF ++ A ++L + + N S +++ + I I + K DL S Sbjct: 271 VAEQISILKTFQIIKTAHVLLFIGDANLGISDQDLHLLQFILNYGKALIIVINKWDLISP 330 Query: 334 -----TYTEEYD----------HLISSFTGEGLEELINKIKS 360 T Y+ H IS+ G G++ L IK+ Sbjct: 331 DLRNTTKKNLYEKINFINFTQIHFISALYGNGIKALFQAIKA 372 >gi|195953604|ref|YP_002121894.1| GTP-binding proten HflX [Hydrogenobaculum sp. Y04AAS1] gi|195933216|gb|ACG57916.1| GTP-binding proten HflX [Hydrogenobaculum sp. Y04AAS1] Length = 370 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 46/150 (30%), Positives = 74/150 (49%), Gaps = 13/150 (8%) Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262 I H + + + N K+ ++G++NAGKSSL AL KK+V ++D+ T D Sbjct: 177 IKKHHKEQRKNRLKTNYLKVALVGYTNAGKSSLMKALTKKNV-FISDMLFATLDTKVGTS 235 Query: 263 DLEGYLVKISDTAGI--RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNI 320 ++G + I+DT G R ++V E K T EV ADL++ + +I+ + + K I Sbjct: 236 FIDGEKIFITDTVGFIDRLPPELV--ESFKTTLEEVTLADLLVFVVDISDHR---WLKKI 290 Query: 321 DFIF-----IGTKSDLYSTYTEEYDHLISS 345 D + IG K + D L+SS Sbjct: 291 DVVNKILEDIGVKDKPILYVFNKIDRLVSS 320 >gi|197117975|ref|YP_002138402.1| ferrous iron transport protein B [Geobacter bemidjiensis Bem] gi|197087335|gb|ACH38606.1| ferrous iron transport protein B [Geobacter bemidjiensis Bem] Length = 663 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 1/83 (1%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ ++G+ N GKS LFNAL V V++ PGT+ +V + G +I DT G+ Sbjct: 23 KVALVGNPNVGKSVLFNALTGAYVT-VSNYPGTSVEVSRGSTAINGEEFEIIDTPGMYSI 81 Query: 281 DDIVEKEGIKRTFLEVENADLIL 303 I E+E + R L E L+L Sbjct: 82 LPITEEERVAREILLTERPHLVL 104 >gi|33866147|ref|NP_897706.1| GTP-binding protein Era [Synechococcus sp. WH 8102] gi|33639122|emb|CAE08128.1| GTP-binding protein ERA homolog [Synechococcus sp. WH 8102] Length = 311 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 1/91 (1%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R+G+ I ++G N GKS+L N L + VAI + + TTR+ L L E + + DT G Sbjct: 11 RSGF-IALIGRPNVGKSTLVNQLVGEKVAITSPVAQTTRNRLRAILTTEDAQMVLVDTPG 69 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKE 307 I + ++ + ++ + DL++LL E Sbjct: 70 IHKPHHLLGERLVQSARSAIGEVDLVVLLLE 100 >gi|218676387|ref|YP_002395206.1| ribosomal biogenesis GTPase [Vibrio splendidus LGP32] gi|218324655|emb|CAV26234.1| putative GTPase [Vibrio splendidus LGP32] Length = 343 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 35/104 (33%), Positives = 56/104 (53%), Gaps = 13/104 (12%) Query: 178 FSEEEDVQNF----SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233 F +E+ V+ S+KE +N ++ L ++ H Q +G+ IR +I+G N GKS Sbjct: 107 FEKEQGVKAIAITTSAKEEVNHVMELVRKLAPHREQ--MGKNIRT----MIMGIPNVGKS 160 Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 ++ N LA + +A+ + P TR I+L G V +SDT GI Sbjct: 161 TIINCLAGRTIAVTGNQPAVTRRQQRINLQ-NG--VILSDTPGI 201 >gi|145295562|ref|YP_001138383.1| GTP-binding protein EngA [Corynebacterium glutamicum R] gi|140845482|dbj|BAF54481.1| hypothetical protein [Corynebacterium glutamicum R] Length = 543 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 56/104 (53%), Gaps = 5/104 (4%) Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274 I+ ++ ++G N GKSSL N A + ++V ++ GTT D + + L+ L K DT Sbjct: 273 IVEGPRRVALVGKPNVGKSSLLNKFAGETRSVVDNVAGTTVDPVDSLIQLDQKLWKFVDT 332 Query: 275 AGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 AG+R +T E RT ++ A+L +LL I+S + I+ Sbjct: 333 AGLRKKVKTASGHEYYASLRTHGAIDAAELCVLL--IDSSEPIT 374 Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust. Identities = 24/84 (28%), Positives = 41/84 (48%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+L N + A+V D PG TRD ++ D G+ + DT G Sbjct: 107 VAIVGRPNVGKSTLVNRFIGRREAVVEDFPGVTRDRISYISDWGGHRFWVQDTGGWDPNV 166 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + ++ + + AD+I+ + Sbjct: 167 KGIHASIAQQAEVAMSTADVIVFV 190 >gi|117928440|ref|YP_872991.1| small GTP-binding protein [Acidothermus cellulolyticus 11B] gi|117648903|gb|ABK53005.1| small GTP-binding protein [Acidothermus cellulolyticus 11B] Length = 458 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 32/55 (58%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 + ++G N GKS+L N + + AIV D+PG TRD ++ ++ G I DT G Sbjct: 17 VAVVGRPNVGKSTLVNRIVGRRQAIVEDVPGVTRDRVSYEVTWSGRRFTIVDTGG 71 Score = 43.5 bits (101), Expect = 0.067, Method: Compositional matrix adjust. Identities = 43/179 (24%), Positives = 80/179 (44%), Gaps = 27/179 (15%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE- 279 ++ I+G N GKSSL N LA ++ A+V + GTTRD + + + ++ DTAG+R Sbjct: 192 RVAIVGRPNVGKSSLLNRLAGEERALVDAVSGTTRDPVDAIVRIGDRRWRVVDTAGLRRR 251 Query: 280 --------------TDDIVEKEGIKRTFLE----VENADLILLLKEINSKKEISFPKN-I 320 TD + L+ + D+ ++ K I++ + + N Sbjct: 252 MRDAVGAEFYAGLRTDQAIRDAEAAVVLLDAAEPITEQDVRIVQKVIDAGRALVLAFNKW 311 Query: 321 DFIFIGTKSDLYSTYTEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLPFS 372 D + + L E H+ IS+ TG G+E+L +++ L+ +++P + Sbjct: 312 DAVDADRRLALAREIETELGHVGWAPRLNISARTGRGVEKLAAALETALAGWEQRVPTA 370 >gi|261329213|emb|CBH12192.1| GTP-binding protein, putative [Trypanosoma brucei gambiense DAL972] Length = 576 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 39/131 (29%), Positives = 59/131 (45%), Gaps = 19/131 (14%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVA-----IVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 +I I+G N+GKSSLFN L + +V D G TRD + LEG I DT Sbjct: 109 RIAIVGRMNSGKSSLFNLLRLEPTVPGRSNVVRDFDGITRDSVEGQAQLEGMHFTIIDTP 168 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEISFP-----KNIDFIFIGT 327 G +V+ ++ F VE AD + + ++ +E+S K++ + + Sbjct: 169 G------MVQGRMVEEAFRTVETADAAIFVTAVDEDIMPEELSLMQYLHLKHMPVVLLAN 222 Query: 328 KSDLYSTYTEE 338 K DL EE Sbjct: 223 KMDLIQEEEEE 233 Score = 40.0 bits (92), Expect = 0.84, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 33/57 (57%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 +I I+G +N+GKSSL N L + D +TRD + + +G +K+ DTAG+ Sbjct: 309 RIAIVGRTNSGKSSLVNRLVGFERNRAVDEKNSTRDPVELPCSYKGRKLKLIDTAGL 365 >gi|295105854|emb|CBL03397.1| GTP-binding protein Era [Gordonibacter pamelaeae 7-10-1-b] Length = 305 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 1/93 (1%) Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272 E ++G+ + ++G NAGKS+L NA+ K +AI +D TTR L E + + + Sbjct: 7 AEGFKSGF-VTLVGRPNAGKSTLINAIMGKKIAITSDTAQTTRHRFRAVLTREDFQLILV 65 Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 DT G+ + D + +E +E+ D++ +L Sbjct: 66 DTPGLHKPHDALGEELNTSALKALEDVDVVAML 98 >gi|308375656|ref|ZP_07668082.1| putative small GTP-binding protein domain protein [Mycobacterium tuberculosis SUMu007] gi|308345614|gb|EFP34465.1| putative small GTP-binding protein domain protein [Mycobacterium tuberculosis SUMu007] Length = 215 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/84 (28%), Positives = 43/84 (51%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+L N + + A+V DIPG TRD + D G + DT G Sbjct: 29 VAVVGRPNVGKSTLVNRILGRREAVVQDIPGVTRDRVCYDALWTGRRFVVQDTGGWEPNA 88 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 +++ ++ + + AD ++L+ Sbjct: 89 KGLQRLVAEQASVAMRTADAVILV 112 >gi|291165839|gb|EFE27886.1| GTP-binding protein [Filifactor alocis ATCC 35896] Length = 393 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 43/125 (34%), Positives = 68/125 (54%), Gaps = 10/125 (8%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTA 275 N I G +N GKSSL NA+A + V++V++ GTT D + I+L G + I DTA Sbjct: 8 NRIHISFFGKTNVGKSSLINAIAHQTVSLVSEQKGTTTDPVKKAIELHPIGPCLLI-DTA 66 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINS----KKEISF--PKNIDFIFIGTKS 329 G + + I+ E I+ T VE D+ + L +S ++ I++ KNI +F+ KS Sbjct: 67 GF-DDNSILGTERIELTKQVVEQTDIAIFLFGDSSFEEERQWITYLHDKNIPTVFVLNKS 125 Query: 330 DLYST 334 D+ + Sbjct: 126 DIVDS 130 >gi|210633812|ref|ZP_03297859.1| hypothetical protein COLSTE_01776 [Collinsella stercoris DSM 13279] gi|210159072|gb|EEA90043.1| hypothetical protein COLSTE_01776 [Collinsella stercoris DSM 13279] Length = 338 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 45/84 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G NAGKS+L NA + VAI + + TTR L ++ EG + I DT GI + Sbjct: 48 VALVGRPNAGKSTLLNACYGEKVAITSPVAQTTRRRLRAVVNREGCQLVIVDTPGIHKPK 107 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 D + E K E+ + D+I + Sbjct: 108 DGLGSELNKSALGELADVDVIAFV 131 >gi|154497937|ref|ZP_02036315.1| hypothetical protein BACCAP_01917 [Bacteroides capillosus ATCC 29799] gi|150272927|gb|EDN00084.1| hypothetical protein BACCAP_01917 [Bacteroides capillosus ATCC 29799] Length = 296 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 15/123 (12%) Query: 155 SSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGE 214 + L+G W R + + D E + + FS V+ ++L K+ I ++G++G Sbjct: 68 NRLWGDWF----RSRGWSVLETDAKEGKGINQFSP--VVKEVL--KDKIQQWQAKGQVGR 119 Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274 IR +I+G N GKS+ N +A++ A +D PG TR + +D + + DT Sbjct: 120 PIR----AMIVGVPNVGKSTFINKVARRKSAKASDKPGVTRGKQWVAVDAG---LDLLDT 172 Query: 275 AGI 277 GI Sbjct: 173 PGI 175 >gi|212639341|ref|YP_002315861.1| GTP-binding protein protease modulator [Anoxybacillus flavithermus WK1] gi|212560821|gb|ACJ33876.1| GTP-binding protein protease modulator [Anoxybacillus flavithermus WK1] Length = 415 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 2/85 (2%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIR 278 ++I ++G++NAGKS+LFN L D A+ ++ T D LT L L GY ++DT G Sbjct: 196 FQIALVGYTNAGKSTLFNRLTNAD-ALEENLLFATLDPLTRKLVLPSGYTALLTDTVGFI 254 Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303 + + T EV+ ADLIL Sbjct: 255 QDLPTTLVAAFRSTLEEVKEADLIL 279 >gi|123436442|ref|XP_001309182.1| small GTP-binding protein [Trichomonas vaginalis G3] gi|121890897|gb|EAX96252.1| small GTP-binding protein, putative [Trichomonas vaginalis G3] Length = 434 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 2/85 (2%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280 I ++G NAGKS++ NA+ ++ +IV PGTT D +++ K+ DTAGI E Sbjct: 21 ISMVGFMNAGKSTIMNAITQQPTSIVDSTPGTTADTKVALMEIHALGPCKLIDTAGIDEK 80 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 + K+ IK T V+ +D++L + Sbjct: 81 GTLGRKKYIK-TESAVKESDVVLFV 104 >gi|312127538|ref|YP_003992412.1| gtp-binding protein era [Caldicellulosiruptor hydrothermalis 108] gi|311777557|gb|ADQ07043.1| GTP-binding protein Era [Caldicellulosiruptor hydrothermalis 108] Length = 300 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 51/208 (24%), Positives = 96/208 (46%), Gaps = 31/208 (14%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 ++G+ + ++G N GKS+L N L K ++I++ P TTR+ + L LE + DT G Sbjct: 4 KSGF-VALIGRPNVGKSTLMNYLVGKKISIISPKPQTTRNSIKGILTLEDAQIIFIDTPG 62 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKE-------------INSKKEISFPKNIDFI 323 + + + + +K + ++ DLIL + E I KE+ PK I Sbjct: 63 VHPPKNKLGEYMVKVSEKTLKEVDLILYIVEAIDNGIGPWDEAIIEKLKEVETPK----I 118 Query: 324 FIGTKSDLYSTYTEE-----------YDHL--ISSFTGEGLEELINKIKSILSNKFKKLP 370 + KSDL S E ++ + I++ G + L++KIK +L K Sbjct: 119 LVLNKSDLASKENMEILKSIFSTKLNFESIVDIAAINGYNCDLLLSKIKELLPEGPKYYL 178 Query: 371 FSIPSHKRHLYHLSQTVRYLEMASLNEK 398 + + R + +++ +R + +L+E+ Sbjct: 179 DDMTTDVRESFIVAEIIREKILLNLSEE 206 >gi|224009828|ref|XP_002293872.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220970544|gb|EED88881.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 453 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 58/219 (26%), Positives = 94/219 (42%), Gaps = 38/219 (17%) Query: 190 KEVLND-ILFLKNDISSHISQGKLGEIIRNGYK------IVILGHSNAGKSSLFNALAKK 242 K +L D IL LK I Q L R G K + ++G++NAGKS+L N L K Sbjct: 160 KRILRDRILVLKEKIDDVQKQRDLH---RRGRKKGGLPVLALVGYTNAGKSTLLNCLTKA 216 Query: 243 DVAIVTDIPGTTRDVLTIDLDLEGYL----VKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 + + +I T D T + L GY V ++DT G + + T EV+ Sbjct: 217 GI-LAENILFATLDPTTRRVKLPGYKTHPEVLLTDTVGFIQKLPTQLVAAFRATLEEVKE 275 Query: 299 ADLILLLKEINS----KKEISFPKNIDFIFIGTKSDLY-------------------STY 335 AD+++ + ++++ K+E S K + I G K + + Sbjct: 276 ADVLVHIVDVSNPCWRKQEDSVTKVLSEIGAGDKPTVRVFNKLDLLDKEDAELIKYEAAC 335 Query: 336 TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374 +E + ISS TGEGL + + ++ LS + +P Sbjct: 336 SENFSVGISSLTGEGLSDFVAVVEDALSGLLVPIELELP 374 >gi|153940181|ref|YP_001392939.1| GTP-binding protein [Clostridium botulinum F str. Langeland] gi|152936077|gb|ABS41575.1| GTP-binding protein [Clostridium botulinum F str. Langeland] gi|295320917|gb|ADG01295.1| GTP-binding protein [Clostridium botulinum F str. 230613] Length = 399 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 41/122 (33%), Positives = 68/122 (55%), Gaps = 8/122 (6%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276 N I +G +N+GKSSL NA+ +D++IV+ I GTT D ++ ++L V +DTAG Sbjct: 8 NRIHITFIGKTNSGKSSLMNAIIGQDISIVSPIEGTTTDPVSKSMELIPLGPVLFTDTAG 67 Query: 277 IRETDDI--VEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK--NIDFIFIGTKS 329 + + ++ V E T L+ + A ++ K+I+ KK I+ K NI +I + K Sbjct: 68 LEDNTELGKVRIEKTLNTLLKTDFAIYVMSAKDIDINVYKKTINKFKEQNISYITVINKM 127 Query: 330 DL 331 D+ Sbjct: 128 DI 129 >gi|297624209|ref|YP_003705643.1| GTP-binding proten HflX [Truepera radiovictrix DSM 17093] gi|297165389|gb|ADI15100.1| GTP-binding proten HflX [Truepera radiovictrix DSM 17093] Length = 568 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 53/196 (27%), Positives = 89/196 (45%), Gaps = 32/196 (16%) Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVL 258 IS ++G+ G I ++G++NAGKS+LFNALAK DV + + TTR+ Sbjct: 366 ISQRRAEGRKGRKASEVPVIALVGYTNAGKSTLFNALAKADVLSQNRLFATLRPTTREGW 425 Query: 259 TIDLDLEGYLVKISDTAG-IRETDDIVEK--EGIKRTFLEVENADLILLLKEINSKKEIS 315 L G V +DT G IR D+ E+ + + T E+ +A+L+L + + + Sbjct: 426 LPALGAWGGKVLYTDTVGFIR---DLPEELVDAFRATLEELHDAELLLHVVDAATPGAPD 482 Query: 316 FPKNIDFIF-----------IGTKSDLYST-----YTEEYDHL-ISSFTGEGLEELINKI 358 ++ I + K+DL + + Y+ L +S+ TG GL+ L + Sbjct: 483 RVAAVNRILDDLGVEVPRTVVLNKADLAAPAELKDLAKRYNALGVSAATGAGLDALKASL 542 Query: 359 KSILSNKFKKLPFSIP 374 +L P +P Sbjct: 543 AQLLEG-----PRHVP 553 >gi|19552644|ref|NP_600646.1| GTP-binding protein EngA [Corynebacterium glutamicum ATCC 13032] gi|62390312|ref|YP_225714.1| GTP-binding protein EngA [Corynebacterium glutamicum ATCC 13032] gi|41325649|emb|CAF21438.1| GTPase of unknown function [Corynebacterium glutamicum ATCC 13032] Length = 543 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 56/104 (53%), Gaps = 5/104 (4%) Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274 I+ ++ ++G N GKSSL N A + ++V ++ GTT D + + L+ L K DT Sbjct: 273 IVEGPRRVALVGKPNVGKSSLLNKFAGETRSVVDNVAGTTVDPVDSLIQLDQKLWKFVDT 332 Query: 275 AGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 AG+R +T E RT ++ A+L +LL I+S + I+ Sbjct: 333 AGLRKKVKTASGHEYYASLRTHGAIDAAELCVLL--IDSSEPIT 374 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 24/84 (28%), Positives = 41/84 (48%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+L N + A+V D PG TRD ++ D G+ + DT G Sbjct: 107 VAIVGRPNVGKSTLVNRFIGRREAVVEDFPGVTRDRISYISDWGGHRFWVQDTGGWDPNV 166 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + ++ + + AD+I+ + Sbjct: 167 KGIHASIAQQAEVAMSTADVIVFV 190 >gi|326387677|ref|ZP_08209283.1| GTP-binding protein Era [Novosphingobium nitrogenifigens DSM 19370] gi|326207723|gb|EGD58534.1| GTP-binding protein Era [Novosphingobium nitrogenifigens DSM 19370] Length = 312 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 2/92 (2%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIRET 280 + ++G NAGKS+L NAL + VAIV+ TTR L + + LEG + + DT G+ E Sbjct: 23 VAVIGAPNAGKSTLVNALVGQKVAIVSSKAQTTRARL-MGIALEGPAQIILVDTPGLFEP 81 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKK 312 +++ + + E AD I+L+ + KK Sbjct: 82 RRRLDRAMVHAAWEGAEAADAIVLVVDARKKK 113 >gi|242091397|ref|XP_002441531.1| hypothetical protein SORBIDRAFT_09g028770 [Sorghum bicolor] gi|241946816|gb|EES19961.1| hypothetical protein SORBIDRAFT_09g028770 [Sorghum bicolor] Length = 459 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 62/247 (25%), Positives = 109/247 (44%), Gaps = 30/247 (12%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTA 275 R+GY + +LG N GKS+L N + + ++IVTD P TTR +L I + E Y + + DT Sbjct: 119 RSGY-VAVLGKPNVGKSTLINQMVGQKLSIVTDKPQTTRHRILGICSEPE-YQIILYDTP 176 Query: 276 G-IRETDDIVEKEGIKRTFLEVENADLIL--------------LLKEINSKKEISFP--- 317 G I++ ++ +K + +AD +L +L+E K+I+ P Sbjct: 177 GVIKKEMHKLDSMMMKNVRSAIGSADCVLVVADACKAPEKIDEMLEEGVGNKDIALPVLL 236 Query: 318 --KNIDFIF---IGTKSDLYSTYTEEYDHL-ISSFTGEGLEELINKIKSILSNKFKKLPF 371 D I I K + Y +T D + IS+ G G++++ I S L P Sbjct: 237 VLNKKDLIKPGEIAKKLEWYQKFTNVDDVIPISAKFGNGVDDIKEWILSKLPLGPAYYPK 296 Query: 372 SIPSHKRHLYHLSQTVR---YLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQL 428 I S + + + VR +++ C +++++ R + ++ V+ E Sbjct: 297 DIASEHPERFFVGEIVREKIFVQYRQEIPYSCQVNVVSYKSRPTAKDFIQVEILVEKETQ 356 Query: 429 LDIIFSK 435 II K Sbjct: 357 RSIILGK 363 >gi|314962902|gb|EFT07002.1| GTP-binding protein Era [Propionibacterium acnes HL082PA1] Length = 342 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 48/192 (25%), Positives = 82/192 (42%), Gaps = 27/192 (14%) Query: 210 GKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266 ++ E R G+ + +G NAGKS+L NAL +AI + P TTR V+ + E Sbjct: 30 ARVAESTRAGFHSGFVCFVGRPNAGKSTLTNALVGSKIAIASSKPQTTRHVIRGVVTDEK 89 Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEIS-F 316 + + DT G+ + ++ + F D+I + N + EI+ Sbjct: 90 SQIVVIDTPGLHKPRTLLGQRLNDLVFDTWTQVDVIGVCLPSNQRIGPGDTYLVSEIAEL 149 Query: 317 PKNIDFIFIGTKSDLYS-TYTEEYDHLISSFTGE-GLE------------ELINKIKSIL 362 P+ I + TKSDL S E+ I GE G+E E I++++ ++ Sbjct: 150 PRRPTLIALATKSDLVSKARMAEHLAAIDKLQGEVGIEFVEVVPCSAVSGEQIDEVRDVI 209 Query: 363 SNKFKKLPFSIP 374 ++ + P P Sbjct: 210 ASLLPEGPAYYP 221 >gi|300787849|ref|YP_003768140.1| GTP-binding protein EngA [Amycolatopsis mediterranei U32] gi|299797363|gb|ADJ47738.1| GTP-binding protein EngA [Amycolatopsis mediterranei U32] Length = 487 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 42/84 (50%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+L N + + A+V D+PG TRD + D G + DT G Sbjct: 44 LAVVGRPNVGKSTLVNRILGRREAVVQDVPGVTRDRVAYDAYWGGRKFTLVDTGGWEPDA 103 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + L ++ AD +LL+ Sbjct: 104 TGLQASVAAQAELAMQTADAVLLV 127 Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 38/59 (64%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 ++ ++G N GKSSL N L+ ++ ++V + GTT D + ++L+G + DTAG+R+ Sbjct: 217 RVALVGKPNVGKSSLLNKLSGEERSVVDSVAGTTVDPVDSLVELDGETWRFVDTAGLRK 275 >gi|253701232|ref|YP_003022421.1| ferrous iron transporter B [Geobacter sp. M21] gi|251776082|gb|ACT18663.1| ferrous iron transport protein B [Geobacter sp. M21] Length = 663 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 1/83 (1%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ ++G+ N GKS LFNAL V V++ PGT+ +V + G +I DT G+ Sbjct: 23 KVALVGNPNVGKSVLFNALTGAYVT-VSNYPGTSVEVSRGSTAINGEEFEIIDTPGMYSI 81 Query: 281 DDIVEKEGIKRTFLEVENADLIL 303 I E+E + R L E L+L Sbjct: 82 LPITEEERVAREILLTERPHLVL 104 >gi|86740164|ref|YP_480564.1| GTP-binding protein EngA [Frankia sp. CcI3] gi|86567026|gb|ABD10835.1| Small GTP-binding protein domain [Frankia sp. CcI3] Length = 487 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 35/166 (21%), Positives = 70/166 (42%), Gaps = 19/166 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+L N + + A+V D+PG TRD + D G + DT G Sbjct: 51 VAVVGRPNVGKSTLVNRILGRRAAVVEDVPGVTRDRVAYDAVWSGRRFTLVDTGGWEPDA 110 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI--------NSKKEISFPKNIDFIFIGTKSD--- 330 + + ++ ++ AD +L + ++ + + + I + K D Sbjct: 111 TGLAAQVSEQARAALDTADAVLFIVDVVTGATDADEAVARVLHRCGLPVILVANKVDDVR 170 Query: 331 -------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369 L+S E H +S+ G G +L++ + + L +++ Sbjct: 171 FEADAAALWSLGLGE-PHPVSALHGRGSGDLLDAVLAALPEAPREI 215 Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 7/90 (7%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ ++G N GKSSL N LA ++V D+ GTTRD + + + G DTAG+R Sbjct: 224 RVALIGRPNVGKSSLLNKLAGSRRSLVHDVAGTTRDPVDELVTVGGEEWMFIDTAGLRRR 283 Query: 281 DDIVEKEGIK-----RTFLEVENADLILLL 305 + E G + RT +E A++ ++L Sbjct: 284 --VREASGAEYYSSLRTASALEAAEVAIVL 311 >gi|294460854|gb|ADE76000.1| unknown [Picea sitchensis] Length = 324 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 47/184 (25%), Positives = 82/184 (44%), Gaps = 32/184 (17%) Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 +G R+GY + ++G N GKS+L N + + ++IVTD P TTR + Y + + Sbjct: 129 VGPDHRSGY-VAVVGKPNVGKSTLLNQMIGQKLSIVTDKPQTTRHRILGLCSAPDYQMVL 187 Query: 272 SDTAGIRETD-DIVEKEGIKRTFLEVENADLILLLKEINSKKE----------ISFPKNI 320 DT G+ + + ++ +K NAD +L + ++ E + K Sbjct: 188 YDTPGVIQKEMHKLDAMMMKNVHSATGNADCVLTVVDVCRVPEKVNDLFEEDGVDLKKKP 247 Query: 321 DFIFIGTKSDLYST--------YTEEY---DHL--ISSFTGEGLEELINKIKSILSNKFK 367 + + K DL + E++ DH+ IS+ G G+E++ N I S Sbjct: 248 PTLLVLNKKDLMKPGEIAKRMEWYEKFGGADHILSISAKYGHGVEDVKNWIVS------- 300 Query: 368 KLPF 371 KLP+ Sbjct: 301 KLPY 304 >gi|162147936|ref|YP_001602397.1| GTP-binding protein Era [Gluconacetobacter diazotrophicus PAl 5] gi|161786513|emb|CAP56095.1| putative GTP-binding protein era homolog [Gluconacetobacter diazotrophicus PAl 5] Length = 305 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 45/180 (25%), Positives = 87/180 (48%), Gaps = 28/180 (15%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTIDLDLEGYLVKISDTA 275 R G+ + I+G NAGKS+L N +A ++IV+ TTR VL I + E ++ + DT Sbjct: 12 RCGF-VAIVGAPNAGKSTLLNRMAGAKLSIVSPKAQTTRFRVLGILMRGESQILLV-DTP 69 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLL----------------KEINSKKEISFPKN 319 GI + +++ + + E+AD+ LLL + S++ + N Sbjct: 70 GIFQPRRKLDRAMVAAAWTGAEDADITLLLVDARRGLSESVRAIVERLAQSRRRVWLVLN 129 Query: 320 -IDFI----FIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374 D + + ++L + E+ +++S+ +G+G+E+L+ S L+ + P+ P Sbjct: 130 KTDLVDRQALLPLTAELSALLDVEHVYMVSARSGDGVEDLL----SALAASLPEGPYLYP 185 >gi|145482289|ref|XP_001427167.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124394246|emb|CAK59769.1| unnamed protein product [Paramecium tetraurelia] Length = 608 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 58/209 (27%), Positives = 97/209 (46%), Gaps = 37/209 (17%) Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EG 266 S+ K ++I +I ++G++NAGKS L N + +KDV D+ T D + + L G Sbjct: 342 SKIKRKKLIHTVPRIALIGYTNAGKSQLLNCILQKDVVQSKDLLFQTLDTTSKSIRLASG 401 Query: 267 YLVKISDTAGIRETD---DIVEKEGIKRTFLEVENADLILLLKEINSK------------ 311 + DT G TD D+V E K T EVE+AD++L +++I+ Sbjct: 402 QKAIMLDTIGFI-TDLPHDLV--ESFKCTLEEVEDADIVLHIRDISHPCTEQQKQVVLDV 458 Query: 312 -KEISFPK---NIDFIFIGTKSDLYSTYTEEYDHL---------ISSFTGEGLEELIN-- 356 KE+ F + N I + K DL S Y +Y+ + +S+ +++L+ Sbjct: 459 LKELGFNQDFYNKKMIEVWNKIDLMS-YPIDYEFIESQDYPIVPVSALMNINIKKLLQVM 517 Query: 357 --KIKSILSNKFKKLPFSIPSHKRHLYHL 383 K IL+ K ++ ++I H L L Sbjct: 518 EEKSNQILNKKLYRIRYNIEQHFERLRWL 546 >gi|313764555|gb|EFS35919.1| GTP-binding protein Era [Propionibacterium acnes HL013PA1] gi|313792243|gb|EFS40344.1| GTP-binding protein Era [Propionibacterium acnes HL110PA1] gi|313801808|gb|EFS43042.1| GTP-binding protein Era [Propionibacterium acnes HL110PA2] gi|313816096|gb|EFS53810.1| GTP-binding protein Era [Propionibacterium acnes HL059PA1] gi|313827675|gb|EFS65389.1| GTP-binding protein Era [Propionibacterium acnes HL063PA2] gi|313838634|gb|EFS76348.1| GTP-binding protein Era [Propionibacterium acnes HL086PA1] gi|314915551|gb|EFS79382.1| GTP-binding protein Era [Propionibacterium acnes HL005PA4] gi|314918495|gb|EFS82326.1| GTP-binding protein Era [Propionibacterium acnes HL050PA1] gi|314919982|gb|EFS83813.1| GTP-binding protein Era [Propionibacterium acnes HL050PA3] gi|314931995|gb|EFS95826.1| GTP-binding protein Era [Propionibacterium acnes HL067PA1] gi|314955864|gb|EFT00264.1| GTP-binding protein Era [Propionibacterium acnes HL027PA1] gi|314958345|gb|EFT02448.1| GTP-binding protein Era [Propionibacterium acnes HL002PA1] gi|314968021|gb|EFT12120.1| GTP-binding protein Era [Propionibacterium acnes HL037PA1] gi|315078117|gb|EFT50168.1| GTP-binding protein Era [Propionibacterium acnes HL053PA2] gi|315098436|gb|EFT70412.1| GTP-binding protein Era [Propionibacterium acnes HL059PA2] gi|315101207|gb|EFT73183.1| GTP-binding protein Era [Propionibacterium acnes HL046PA1] gi|327450881|gb|EGE97535.1| GTP-binding protein Era [Propionibacterium acnes HL087PA3] gi|327453042|gb|EGE99696.1| GTP-binding protein Era [Propionibacterium acnes HL092PA1] gi|327453770|gb|EGF00425.1| GTP-binding protein Era [Propionibacterium acnes HL083PA2] gi|328754301|gb|EGF67917.1| GTP-binding protein Era [Propionibacterium acnes HL087PA1] gi|328754447|gb|EGF68063.1| GTP-binding protein Era [Propionibacterium acnes HL025PA2] Length = 342 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 48/192 (25%), Positives = 82/192 (42%), Gaps = 27/192 (14%) Query: 210 GKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266 ++ E R G+ + +G NAGKS+L NAL +AI + P TTR V+ + E Sbjct: 30 ARVAESTRAGFHSGFVCFVGRPNAGKSTLTNALVGSKIAIASSKPQTTRHVIRGVVTDEK 89 Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEIS-F 316 + + DT G+ + ++ + F D+I + N + EI+ Sbjct: 90 SQIVVIDTPGLHKPRTLLGQRLNDLVFDTWTQVDVIGVCLPSNQRIGPGDTYLVSEIAEL 149 Query: 317 PKNIDFIFIGTKSDLYS-TYTEEYDHLISSFTGE-GLE------------ELINKIKSIL 362 P+ I + TKSDL S E+ I GE G+E E I++++ ++ Sbjct: 150 PRRPTLIALATKSDLVSKARMAEHLAAIDKLQGEVGIEFVEVVPCSAVSGEQIDEVRDVI 209 Query: 363 SNKFKKLPFSIP 374 ++ + P P Sbjct: 210 ASLLPEGPAYYP 221 >gi|289425268|ref|ZP_06427045.1| GTP-binding protein Era [Propionibacterium acnes SK187] gi|289154246|gb|EFD02934.1| GTP-binding protein Era [Propionibacterium acnes SK187] Length = 340 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 48/192 (25%), Positives = 82/192 (42%), Gaps = 27/192 (14%) Query: 210 GKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266 ++ E R G+ + +G NAGKS+L NAL +AI + P TTR V+ + E Sbjct: 28 ARVAESTRAGFHSGFVCFVGRPNAGKSTLTNALVGSKIAIASSKPQTTRHVIRGVVTDEK 87 Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEIS-F 316 + + DT G+ + ++ + F D+I + N + EI+ Sbjct: 88 SQIVVIDTPGLHKPRTLLGQRLNDLVFDTWTQVDVIGVCLPSNQRIGPGDTYLVSEIAEL 147 Query: 317 PKNIDFIFIGTKSDLYS-TYTEEYDHLISSFTGE-GLE------------ELINKIKSIL 362 P+ I + TKSDL S E+ I GE G+E E I++++ ++ Sbjct: 148 PRRPTLIALATKSDLVSKARMAEHLAAIDKLQGEVGIEFVEVVPCSAVSGEQIDEVRDVI 207 Query: 363 SNKFKKLPFSIP 374 ++ + P P Sbjct: 208 ASLLPEGPAYYP 219 >gi|26006713|sp|Q8NQK6|DER_CORGL RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|21324196|dbj|BAB98821.1| Predicted GTPases [Corynebacterium glutamicum ATCC 13032] Length = 519 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 56/104 (53%), Gaps = 5/104 (4%) Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274 I+ ++ ++G N GKSSL N A + ++V ++ GTT D + + L+ L K DT Sbjct: 249 IVEGPRRVALVGKPNVGKSSLLNKFAGETRSVVDNVAGTTVDPVDSLIQLDQKLWKFVDT 308 Query: 275 AGIR---ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 AG+R +T E RT ++ A+L +LL I+S + I+ Sbjct: 309 AGLRKKVKTASGHEYYASLRTHGAIDAAELCVLL--IDSSEPIT 350 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 24/84 (28%), Positives = 41/84 (48%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+L N + A+V D PG TRD ++ D G+ + DT G Sbjct: 83 VAIVGRPNVGKSTLVNRFIGRREAVVEDFPGVTRDRISYISDWGGHRFWVQDTGGWDPNV 142 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + ++ + + AD+I+ + Sbjct: 143 KGIHASIAQQAEVAMSTADVIVFV 166 >gi|83952357|ref|ZP_00961088.1| GTP-binding protein EngA [Roseovarius nubinhibens ISM] gi|83836030|gb|EAP75328.1| GTP-binding protein EngA [Roseovarius nubinhibens ISM] Length = 479 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 41/66 (62%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ ++G NAGKS+L N + ++ + G TRD +++ ++ +G +++ DTAG+R+ Sbjct: 192 QVAVVGRPNAGKSTLINKILGEERLLTGPEAGITRDAISLKMNWDGVPMRVFDTAGMRKK 251 Query: 281 DDIVEK 286 + EK Sbjct: 252 AKVQEK 257 Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust. Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 6/95 (6%) Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGI 289 GKS+LFN L K +A+V D PG TRD+ + L + DTAG+ + TDD ++ Sbjct: 2 GKSTLFNRLVGKRLALVDDQPGVTRDLREGEARLGDLRFTVIDTAGLEDATDDSLQGRMR 61 Query: 290 KRTFLEVENADLILLLKEINSKKEISFPKNIDFIF 324 + T V+ AD+ L + I+++ ++ ID +F Sbjct: 62 RLTERAVDMADICLFV--IDARTGVT---PIDEVF 91 >gi|254449216|ref|ZP_05062665.1| GTP-binding protein EngA [gamma proteobacterium HTCC5015] gi|198261193|gb|EDY85489.1| GTP-binding protein EngA [gamma proteobacterium HTCC5015] Length = 472 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 28/98 (28%), Positives = 53/98 (54%), Gaps = 5/98 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I ++G N GKS+L N + + + D PGTTRD + + + E + DTAG+R+ Sbjct: 180 RIAVVGRPNVGKSTLINRILGETRVLAYDAPGTTRDSIFVPFESELGRYTLIDTAGVRKR 239 Query: 281 DDI---VEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 I VEK + + + A ++L + I++++ ++ Sbjct: 240 GKIHETVEKFSVVKALQAIAEAHVVLQV--IDARRGVA 275 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 2/94 (2%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS+LFN L + A+V D+PG TRD + L + DT G+ Sbjct: 5 IAIVGRPNVGKSTLFNCLTRTRDALVADMPGLTRDRKYGNGKLGDRAYVVVDTGGLSTDQ 64 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D ++ + ++ AD++L + ++S++ I+ Sbjct: 65 DEMDNLMASQAQQAMDEADILLFM--VDSREGIN 96 >gi|193071490|ref|ZP_03052402.1| putative GTPase [Escherichia coli E110019] gi|192955212|gb|EDV85703.1| putative GTPase [Escherichia coli E110019] Length = 290 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 38/108 (35%), Positives = 57/108 (52%), Gaps = 4/108 (3%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L +S HI + L ++ + I I+G S AGKSSL NAL + +V V+D+ TR+V Sbjct: 17 LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVR 75 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305 L G+ + I+D G+ E+ + E E + R L DL+L L Sbjct: 76 RFRLSGHGHSMIITDLPGVGESRNRDAEYEALYRDIL--PELDLVLWL 121 >gi|312135210|ref|YP_004002548.1| gtp-binding protein era [Caldicellulosiruptor owensensis OL] gi|311775261|gb|ADQ04748.1| GTP-binding protein Era [Caldicellulosiruptor owensensis OL] Length = 300 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 50/208 (24%), Positives = 96/208 (46%), Gaps = 31/208 (14%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 ++G+ + ++G N GKS+L N L K ++I++ P TTR+ + L LE + DT G Sbjct: 4 KSGF-VALIGRPNVGKSTLMNYLVGKKISIISPKPQTTRNSIKGILTLEDAQIIFIDTPG 62 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKE-------------INSKKEISFPKNIDFI 323 + + + + +K + ++ DLIL + E + KE+ PK I Sbjct: 63 VHPPKNKLGEYMVKVSEKTLKEVDLILYIVEAIDNGIGPWDEAIVEKLKEVETPK----I 118 Query: 324 FIGTKSDLYSTYTEE-----------YDHL--ISSFTGEGLEELINKIKSILSNKFKKLP 370 + KSDL S E ++ + I++ G + L+N+IK +L K Sbjct: 119 LVLNKSDLASKENIEVLKSIFSAKLNFESIIDIAAINGYNCDLLLNEIKELLPEGPKYYL 178 Query: 371 FSIPSHKRHLYHLSQTVRYLEMASLNEK 398 + + R + +++ +R + +L+E+ Sbjct: 179 DDMTTDVRESFIVAEIIREKILLNLSEE 206 >gi|309388705|gb|ADO76585.1| iron-only hydrogenase maturation protein HydF [Halanaerobium praevalens DSM 2228] Length = 415 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 47/138 (34%), Positives = 63/138 (45%), Gaps = 18/138 (13%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280 I + G N GKSSL N L +D+A+V+ PGTT D + ++L V I DTAGI + Sbjct: 12 IAVFGRRNVGKSSLINRLTNQDLALVSSQPGTTTDPVYKAMELLPIGPVMIIDTAGIDDQ 71 Query: 281 DDIVEKEGIKRTFLEVENADLILLL------------KEINSKKEISFPKNIDFIFIGTK 328 ++ IK+T + DL LL+ K I KE KNI F+ I K Sbjct: 72 GELGAMR-IKKTKEIMRKTDLALLVISAAQGAGDFERKLIKDFKE----KNIPFLTILNK 126 Query: 329 SDLYSTYTEEYDHLISSF 346 D+ E L S Sbjct: 127 IDILKDLNSEQVELKSEL 144 >gi|317055259|ref|YP_004103726.1| small GTP-binding protein [Ruminococcus albus 7] gi|315447528|gb|ADU21092.1| small GTP-binding protein [Ruminococcus albus 7] Length = 396 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 49/170 (28%), Positives = 77/170 (45%), Gaps = 16/170 (9%) Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKI 271 GE + G+ G NAGKSS+ NA +++AIV+D PGTT D + ++L V I Sbjct: 9 GERVHIGF----FGRRNAGKSSVVNAFTNQELAIVSDTPGTTTDPVYKAMELLPMGPVMI 64 Query: 272 SDTAGIRETDDIVE------KEGIKRTFLEVENADLILLLKEINSKKEISF--PKNIDFI 323 DT G + + E E + RT V D L E + K+ I + I ++ Sbjct: 65 IDTPGYDDEGKLGELRVRKTSEVLGRTDCAVLVTDCTRDLDE-SEKQLIKLFDSRRIPYV 123 Query: 324 FIGTKSDLYS--TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371 KSDL +E + +S+ + EL K+ + + K + +P Sbjct: 124 IAKNKSDLLDDIPAADEKEIYVSALNNTMIHELREKVAQLSAYKEQNVPL 173 >gi|296535949|ref|ZP_06898098.1| GTP-binding protein Era [Roseomonas cervicalis ATCC 49957] gi|296263722|gb|EFH10198.1| GTP-binding protein Era [Roseomonas cervicalis ATCC 49957] Length = 319 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 42/174 (24%), Positives = 77/174 (44%), Gaps = 25/174 (14%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G NAGKS+L N LA V+IV+ P TTR + + E + ++DT GI Sbjct: 30 VAVVGAPNAGKSTLVNRLAGAKVSIVSPKPQTTRFRIRAVVMQERTQIVLTDTPGIFSPR 89 Query: 282 DIVEKEGIKRTFLEVENADLILLL--------KEINSKKEISFPKNIDFIFIGTKSDLYS 333 +++ + + ++ADL LL+ + + S + + + KSDL Sbjct: 90 RRLDRAMVAAAWEGAQDADLALLIVDSRAGMTEAVESIISVLKRSRVPIWLVLNKSDLID 149 Query: 334 T-------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374 T + E +IS+ G+GL+ ++ + L + + P+ P Sbjct: 150 TKKLLPLTASLNEQLSFEETFMISAEKGDGLDRMM----AALGRRLPEGPWLFP 199 >gi|322418933|ref|YP_004198156.1| ferrous iron transport protein B [Geobacter sp. M18] gi|320125320|gb|ADW12880.1| ferrous iron transport protein B [Geobacter sp. M18] Length = 663 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 1/83 (1%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ ++G+ N GKS LFNAL V V++ PGT+ +V + + G ++ DT G+ Sbjct: 23 KVALVGNPNVGKSVLFNALTGAYVT-VSNYPGTSVEVSRGNAVINGEEFEVIDTPGMYSI 81 Query: 281 DDIVEKEGIKRTFLEVENADLIL 303 I E+E + R L E L+L Sbjct: 82 LPITEEERVAREILLTERPHLVL 104 >gi|42560997|ref|NP_975448.1| GTP-binding protein Era [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|42492494|emb|CAE77090.1| GTP-BINDING PROTEIN ERA HOMOLOG [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|301320412|gb|ADK69055.1| GTP-binding protein Era [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 301 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 49/170 (28%), Positives = 85/170 (50%), Gaps = 31/170 (18%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTIDLDLEGYLVKISDTAGI--- 277 + I+G N GKS+L N L + ++IVT+ P TTR ++ I + Y + DT G+ Sbjct: 9 VSIIGRPNVGKSTLLNKLIGEKISIVTNKPQTTRNNIRGILTKKDQYQIVFIDTPGVHTS 68 Query: 278 -RETDDIVEKEGIKRTFLEVENADLILLLK---EINSKKEISF---PKNIDF--IFIGTK 328 ++ D + +K T ++ D+IL L E+ K ++ KN+D I + TK Sbjct: 69 KKQLDKFLNTSALKST----KDVDVILFLAPSDEVIGKNDLFLLKQIKNLDVFKILVITK 124 Query: 329 SD------------LYSTYTEEYDHLI--SSFTGEGLEELINKIKSILSN 364 +D +S+Y +++D +I SS T +E+L+ I + LS+ Sbjct: 125 ADNVTKEQLILKANEWSSYQDQFDEIIITSSITNLNIEKLLELIVNNLSD 174 >gi|269795601|ref|YP_003315056.1| GTP-binding proten HflX [Sanguibacter keddieii DSM 10542] gi|269097786|gb|ACZ22222.1| GTP-binding proten HflX [Sanguibacter keddieii DSM 10542] Length = 515 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 52/197 (26%), Positives = 86/197 (43%), Gaps = 31/197 (15%) Query: 222 IVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 + I G++NAGKSSL NAL V A+ + T R T D G + ++DT G Sbjct: 296 VAIAGYTNAGKSSLLNALTGAGVLVENALFATLDPTVRRTKTPD----GRVYTLADTVGF 351 Query: 278 RETDDIVEKEGIKRTFLEVENADLILLL---------KEINSKKEI--SFPKNIDF--IF 324 + E + T EV ++DL+L + +I + + + P +D + Sbjct: 352 VRSLPHQLVEAFRSTLEEVADSDLLLHVVDASHPDPEGQIAAVRHVLEGIPGALDVPEVI 411 Query: 325 IGTKSDLYSTYT-------EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377 + K+DL T E ++S+ TGEG+ EL++ I L + + +P + Sbjct: 412 VLNKADLADPDTIARLRSRERTTLVVSAHTGEGITELLDLISGALPHPGVTVDLIVPYSR 471 Query: 378 RHL---YHLSQTVRYLE 391 L HL + +LE Sbjct: 472 GDLVNRVHLEGEIDHLE 488 >gi|269123217|ref|YP_003305794.1| GTP-binding protein HSR1-like protein [Streptobacillus moniliformis DSM 12112] gi|268314543|gb|ACZ00917.1| GTP-binding protein HSR1-related protein [Streptobacillus moniliformis DSM 12112] Length = 391 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 44/73 (60%) Query: 205 SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL 264 +I++ L + + + KI ++G SN GKS+L N L +K+++ V+ GTT+ +L Sbjct: 154 QYIAKNILKKSLDSNVKIAVIGVSNVGKSNLINLLLEKNISTVSKFSGTTKKMLVNKKKT 213 Query: 265 EGYLVKISDTAGI 277 + Y++ I DT G+ Sbjct: 214 KEYMLTIIDTPGL 226 >gi|209542554|ref|YP_002274783.1| GTP-binding protein Era [Gluconacetobacter diazotrophicus PAl 5] gi|209530231|gb|ACI50168.1| GTP-binding protein Era [Gluconacetobacter diazotrophicus PAl 5] Length = 297 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 45/180 (25%), Positives = 87/180 (48%), Gaps = 28/180 (15%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTIDLDLEGYLVKISDTA 275 R G+ + I+G NAGKS+L N +A ++IV+ TTR VL I + E ++ + DT Sbjct: 4 RCGF-VAIVGAPNAGKSTLLNRMAGAKLSIVSPKAQTTRFRVLGILMRGESQILLV-DTP 61 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLL----------------KEINSKKEISFPKN 319 GI + +++ + + E+AD+ LLL + S++ + N Sbjct: 62 GIFQPRRKLDRAMVAAAWTGAEDADITLLLVDARRGLSESVRAIVERLAQSRRRVWLVLN 121 Query: 320 -IDFI----FIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374 D + + ++L + E+ +++S+ +G+G+E+L+ S L+ + P+ P Sbjct: 122 KTDLVDRQALLPLTAELSALLDVEHVYMVSARSGDGVEDLL----SALAASLPEGPYLYP 177 >gi|103486700|ref|YP_616261.1| GTP-binding protein Era [Sphingopyxis alaskensis RB2256] gi|98976777|gb|ABF52928.1| GTP-binding protein Era [Sphingopyxis alaskensis RB2256] Length = 297 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 45/180 (25%), Positives = 84/180 (46%), Gaps = 28/180 (15%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTA 275 R G+ + ++G NAGKS+L NAL + VAIV+ TTR ++ + ++ E +V I DT Sbjct: 4 RCGF-VAVVGAPNAGKSTLVNALVGQKVAIVSPKAQTTRTRLMGVAMEGETQIVLI-DTP 61 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI------------ 323 GI +++ + + +E A+ IL++ + +K + +D I Sbjct: 62 GIFAPARRLDRAMVAAAWGSLEQAEAILVMVDAAAKPTGRVERVLDGIANRPEKKYLILN 121 Query: 324 ---------FIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374 + +DL + T + I++ +G+G+ EL K+ L+ + P+ P Sbjct: 122 KVDLTRKDKLLTLATDLNAKLTFDETFFIAASSGDGVPEL----KAHLAGMMPEGPWHFP 177 >gi|295094544|emb|CBK83635.1| iron-only hydrogenase maturation protein HydF [Coprococcus sp. ART55/1] Length = 411 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 46/150 (30%), Positives = 73/150 (48%), Gaps = 13/150 (8%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276 N I G NAGKSSL NA+ + +A+V+D+ GTT D + ++L V I DT G Sbjct: 10 NRVHIGFFGCRNAGKSSLVNAVTGQSLAVVSDVAGTTTDPVYKSMELLPLGPVVIIDTPG 69 Query: 277 IRETDDIVE--KEGIKRTFLEVENADLIL-----LLKEINSKKEISFPKNIDFIFIGTKS 329 I +T ++ E ++ +++ A L++ L E+ KNI++I KS Sbjct: 70 IDDTGELGELRVSKTRQVLAKIDVAVLVVDGSVGLSAADRELTELFKEKNINYIIAYNKS 129 Query: 330 DLYS-----TYTEEYDHLISSFTGEGLEEL 354 DL + E +S+ +G+EEL Sbjct: 130 DLVKDDIQVQNSAENSIWVSAERRQGIEEL 159 >gi|257063791|ref|YP_003143463.1| GTP-binding proten HflX [Slackia heliotrinireducens DSM 20476] gi|256791444|gb|ACV22114.1| GTP-binding proten HflX [Slackia heliotrinireducens DSM 20476] Length = 433 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 50/190 (26%), Positives = 85/190 (44%), Gaps = 33/190 (17%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 +K+ G++NAGKSSL N L +V + + TTR ++ EG V I+DT Sbjct: 214 FKVAEAGYTNAGKSSLLNRLTNAEVLSYDKLFATLDSTTRKLVLP----EGREVTITDTV 269 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLIL-------------------LLKEINSK---KE 313 G + E T E+ ADLI+ L++I ++ + Sbjct: 270 GFIQKLPTTLVEAFNSTLDEIRGADLIMHVVDASSNERDLQMNAVGDTLEQIGAQDIPRL 329 Query: 314 ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373 + F K ID + G ++ L S Y L+S+ TGEG++ LI+ + ++ + + + + Sbjct: 330 VVFNK-IDLVDEGDRAILASRYPMAI--LVSAETGEGIDGLIDALARAVAAQEELMDVLV 386 Query: 374 PSHKRHLYHL 383 P K + L Sbjct: 387 PYSKGSVVSL 396 >gi|315499945|ref|YP_004088748.1| gtp-binding protein era [Asticcacaulis excentricus CB 48] gi|315417957|gb|ADU14597.1| GTP-binding protein Era [Asticcacaulis excentricus CB 48] Length = 323 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 34/102 (33%), Positives = 56/102 (54%), Gaps = 3/102 (2%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTIDLDLEGYLVKISDTA 275 R G+ I+G NAGKS+L NAL V+IVT TTR V I + + +V + DT Sbjct: 12 RAGFA-AIIGAPNAGKSTLVNALVGSKVSIVTQKVQTTRFPVRGIAIHGKAQIVLV-DTP 69 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP 317 GI + +++ +K + E+AD++++L + + + FP Sbjct: 70 GIFKPRRRLDRAMVKSAWGGAEDADIVVMLIDAPAHLAVHFP 111 >gi|220917487|ref|YP_002492791.1| small GTP-binding protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219955341|gb|ACL65725.1| small GTP-binding protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 688 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 1/85 (1%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273 +++ ++++G+ N GKS LF AL K V V++ PGTT +V +EG + D Sbjct: 20 QVVSAARSVILVGNPNVGKSVLFGALTGKYVT-VSNYPGTTVEVTRGSATIEGRPWHVMD 78 Query: 274 TAGIRETDDIVEKEGIKRTFLEVEN 298 T G + E E + R L VE Sbjct: 79 TPGTNNLLPMSEDEQVTRDILLVER 103 >gi|56752391|ref|YP_173092.1| hypothetical protein syc2382_d [Synechococcus elongatus PCC 6301] gi|56687350|dbj|BAD80572.1| hypothetical protein [Synechococcus elongatus PCC 6301] Length = 513 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 73/253 (28%), Positives = 110/253 (43%), Gaps = 26/253 (10%) Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKL--------GEIIRNGYKIVILGHSNAGKSS 234 +V+ +++E L + N I+ I++ L E+ R ++VI G +AGK+S Sbjct: 82 EVKAEAAEENLKAVQQQVNQIADEIAREALLERSRQIAAELERGELRVVIFGTGSAGKTS 141 Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL--VKISDTAGIRETDDIVE-KEGIKR 291 L NAL + V V G+T + T L L G + I+DT GI E +E + R Sbjct: 142 LINALLGRIVGKVEATMGSTEEGRTYRLGLRGVGRDILITDTPGILEAGVAGRLREKLAR 201 Query: 292 TFLEVENADLILLLKEINSKKEISFPKNIDFIFIG-------TKSDLYSTYTEEYDHLIS 344 L VE ADL+L + + N + +D IG K+DLY E I Sbjct: 202 Q-LAVE-ADLLLFVVD-NDLRRSELEPCLDLARIGKRSLLIFNKADLYEDRDREA---IL 255 Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI 404 + E L+ LI IL+ P +P T MA++ + G D+ Sbjct: 256 ARLRERLKGLIPP-SDILTAIASPQPVRLPDGSFLQPEPEVTTLLKRMAAVLRSE-GEDL 313 Query: 405 IAENLRLASVSLG 417 IA+N+ L S LG Sbjct: 314 IADNILLQSQRLG 326 >gi|312196768|ref|YP_004016829.1| ribosome-associated GTPase EngA [Frankia sp. EuI1c] gi|311228104|gb|ADP80959.1| ribosome-associated GTPase EngA [Frankia sp. EuI1c] Length = 438 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 31/55 (56%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 + ++G N GKS+L N + + A+V D+PG TRD + D + G + DT G Sbjct: 2 LAVVGRPNVGKSTLVNRILGRRAAVVEDVPGVTRDRVAYDANWSGRRFTLVDTGG 56 Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 ++ ++G N GKSS+ N LA ++ A+V D+ GTTRD + + + G DTAG+R Sbjct: 175 RVALVGRPNVGKSSMLNRLAGEERALVHDVAGTTRDPVDELVTVGGEQWLFIDTAGLRR 233 >gi|81300518|ref|YP_400726.1| small GTP-binding protein domain-containing protein [Synechococcus elongatus PCC 7942] gi|81169399|gb|ABB57739.1| Small GTP-binding protein domain [Synechococcus elongatus PCC 7942] Length = 513 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 73/253 (28%), Positives = 110/253 (43%), Gaps = 26/253 (10%) Query: 183 DVQNFSSKEVLNDILFLKNDISSHISQGKL--------GEIIRNGYKIVILGHSNAGKSS 234 +V+ +++E L + N I+ I++ L E+ R ++VI G +AGK+S Sbjct: 82 EVKAEAAEENLKAVQQQVNQIADEIAREALLERSRQIAAELERGELRVVIFGTGSAGKTS 141 Query: 235 LFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL--VKISDTAGIRETDDIVE-KEGIKR 291 L NAL + V V G+T + T L L G + I+DT GI E +E + R Sbjct: 142 LINALLGRIVGKVEATMGSTEEGQTYRLGLRGVGRDILITDTPGILEAGVAGRLREKLAR 201 Query: 292 TFLEVENADLILLLKEINSKKEISFPKNIDFIFIG-------TKSDLYSTYTEEYDHLIS 344 L VE ADL+L + + N + +D IG K+DLY E I Sbjct: 202 Q-LAVE-ADLLLFVVD-NDLRRSELEPCLDLARIGKRSLLIFNKADLYEDRDREA---IL 255 Query: 345 SFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLDI 404 + E L+ LI IL+ P +P T MA++ + G D+ Sbjct: 256 ARLRERLKGLIPP-SDILTAIASPQPVRLPDGSFLQPEPEVTTLLKRMAAVLRSE-GEDL 313 Query: 405 IAENLRLASVSLG 417 IA+N+ L S LG Sbjct: 314 IADNILLQSQRLG 326 >gi|15608851|ref|NP_216229.1| GTP-binding protein EngA [Mycobacterium tuberculosis H37Rv] gi|15841173|ref|NP_336210.1| GTP-binding protein EngA [Mycobacterium tuberculosis CDC1551] gi|31792900|ref|NP_855393.1| GTP-binding protein EngA [Mycobacterium bovis AF2122/97] gi|121637621|ref|YP_977844.1| GTP-binding protein EngA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148661511|ref|YP_001283034.1| GTP-binding protein EngA [Mycobacterium tuberculosis H37Ra] gi|148822919|ref|YP_001287673.1| GTP-binding protein EngA [Mycobacterium tuberculosis F11] gi|167967183|ref|ZP_02549460.1| GTP-binding protein EngA [Mycobacterium tuberculosis H37Ra] gi|215403983|ref|ZP_03416164.1| GTP-binding protein EngA [Mycobacterium tuberculosis 02_1987] gi|215411361|ref|ZP_03420169.1| GTP-binding protein EngA [Mycobacterium tuberculosis 94_M4241A] gi|215445899|ref|ZP_03432651.1| GTP-binding protein EngA [Mycobacterium tuberculosis T85] gi|218753421|ref|ZP_03532217.1| GTP-binding protein EngA [Mycobacterium tuberculosis GM 1503] gi|224990096|ref|YP_002644783.1| GTP-binding protein [Mycobacterium bovis BCG str. Tokyo 172] gi|253799248|ref|YP_003032249.1| GTP-binding protein engA [Mycobacterium tuberculosis KZN 1435] gi|254231909|ref|ZP_04925236.1| GTP-binding protein engA [Mycobacterium tuberculosis C] gi|254364552|ref|ZP_04980598.1| GTP-binding protein engA [Mycobacterium tuberculosis str. Haarlem] gi|254550724|ref|ZP_05141171.1| GTP-binding protein EngA [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260186666|ref|ZP_05764140.1| GTP-binding protein EngA [Mycobacterium tuberculosis CPHL_A] gi|260204983|ref|ZP_05772474.1| GTP-binding protein EngA [Mycobacterium tuberculosis K85] gi|289447328|ref|ZP_06437072.1| GTP-binding protein engA [Mycobacterium tuberculosis CPHL_A] gi|289554514|ref|ZP_06443724.1| GTP-binding protein engA [Mycobacterium tuberculosis KZN 605] gi|289574381|ref|ZP_06454608.1| GTP-binding protein engA [Mycobacterium tuberculosis K85] gi|289745849|ref|ZP_06505227.1| GTP-binding protein engA [Mycobacterium tuberculosis 02_1987] gi|289757822|ref|ZP_06517200.1| GTP-binding protein [Mycobacterium tuberculosis T85] gi|289761869|ref|ZP_06521247.1| GTP-binding protein engA [Mycobacterium tuberculosis GM 1503] gi|294993177|ref|ZP_06798868.1| GTP-binding protein EngA [Mycobacterium tuberculosis 210] gi|297634266|ref|ZP_06952046.1| GTP-binding protein EngA [Mycobacterium tuberculosis KZN 4207] gi|297731253|ref|ZP_06960371.1| GTP-binding protein EngA [Mycobacterium tuberculosis KZN R506] gi|298525211|ref|ZP_07012620.1| GTP-binding protein engA [Mycobacterium tuberculosis 94_M4241A] gi|306775899|ref|ZP_07414236.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu001] gi|306779717|ref|ZP_07418054.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu002] gi|306788817|ref|ZP_07427139.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu004] gi|306793153|ref|ZP_07431455.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu005] gi|306797532|ref|ZP_07435834.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu006] gi|306803413|ref|ZP_07440081.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu008] gi|306967812|ref|ZP_07480473.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu009] gi|306972008|ref|ZP_07484669.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu010] gi|307084298|ref|ZP_07493411.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu012] gi|313658585|ref|ZP_07815465.1| GTP-binding protein Der [Mycobacterium tuberculosis KZN V2475] gi|54037050|sp|P64058|DER_MYCBO RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|54040974|sp|P64057|DER_MYCTU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|166225826|sp|A1KJD0|DER_MYCBP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|166225827|sp|A5U372|DER_MYCTA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|254783160|sp|C1ANY6|DER_MYCBT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|2326756|emb|CAB10970.1| PROBABLE GTP-BINDING PROTEIN ENGA [Mycobacterium tuberculosis H37Rv] gi|13881394|gb|AAK46024.1| GTP-binding protein [Mycobacterium tuberculosis CDC1551] gi|31618491|emb|CAD94443.1| PROBABLE GTP-BINDING PROTEIN ENGA [Mycobacterium bovis AF2122/97] gi|121493268|emb|CAL71739.1| Probable GTP-binding protein engA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124600968|gb|EAY59978.1| GTP-binding protein engA [Mycobacterium tuberculosis C] gi|134150066|gb|EBA42111.1| GTP-binding protein engA [Mycobacterium tuberculosis str. Haarlem] gi|148505663|gb|ABQ73472.1| GTP-binding protein EngA [Mycobacterium tuberculosis H37Ra] gi|148721446|gb|ABR06071.1| GTP-binding protein engA [Mycobacterium tuberculosis F11] gi|224773209|dbj|BAH26015.1| GTP-binding protein [Mycobacterium bovis BCG str. Tokyo 172] gi|253320751|gb|ACT25354.1| GTP-binding protein engA [Mycobacterium tuberculosis KZN 1435] gi|289420286|gb|EFD17487.1| GTP-binding protein engA [Mycobacterium tuberculosis CPHL_A] gi|289439146|gb|EFD21639.1| GTP-binding protein engA [Mycobacterium tuberculosis KZN 605] gi|289538812|gb|EFD43390.1| GTP-binding protein engA [Mycobacterium tuberculosis K85] gi|289686377|gb|EFD53865.1| GTP-binding protein engA [Mycobacterium tuberculosis 02_1987] gi|289709375|gb|EFD73391.1| GTP-binding protein engA [Mycobacterium tuberculosis GM 1503] gi|289713386|gb|EFD77398.1| GTP-binding protein [Mycobacterium tuberculosis T85] gi|298495005|gb|EFI30299.1| GTP-binding protein engA [Mycobacterium tuberculosis 94_M4241A] gi|308215649|gb|EFO75048.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu001] gi|308327367|gb|EFP16218.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu002] gi|308334633|gb|EFP23484.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu004] gi|308338420|gb|EFP27271.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu005] gi|308342143|gb|EFP30994.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu006] gi|308349930|gb|EFP38781.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu008] gi|308354551|gb|EFP43402.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu009] gi|308358528|gb|EFP47379.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu010] gi|308366087|gb|EFP54938.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu012] gi|323719804|gb|EGB28918.1| GTP-binding protein engA [Mycobacterium tuberculosis CDC1551A] gi|326903328|gb|EGE50261.1| GTP-binding protein engA [Mycobacterium tuberculosis W-148] gi|328459000|gb|AEB04423.1| GTP-binding protein engA [Mycobacterium tuberculosis KZN 4207] Length = 463 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/84 (28%), Positives = 43/84 (51%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+L N + + A+V DIPG TRD + D G + DT G Sbjct: 29 VAVVGRPNVGKSTLVNRILGRREAVVQDIPGVTRDRVCYDALWTGRRFVVQDTGGWEPNA 88 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 +++ ++ + + AD ++L+ Sbjct: 89 KGLQRLVAEQASVAMRTADAVILV 112 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 35/59 (59%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 ++ ++G N GKSSL N LA ++V + GTT D + ++L G + + DTAG+R Sbjct: 201 RVALVGKPNVGKSSLLNKLAGDQRSVVHEAAGTTVDPVDSLIELGGDVWRFVDTAGLRR 259 >gi|198283250|ref|YP_002219571.1| GTP-binding protein Era [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666809|ref|YP_002425833.1| GTP-binding protein Era [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247771|gb|ACH83364.1| GTP-binding protein Era [Acidithiobacillus ferrooxidans ATCC 53993] gi|218519022|gb|ACK79608.1| GTP-binding protein Era [Acidithiobacillus ferrooxidans ATCC 23270] Length = 304 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 35/102 (34%), Positives = 55/102 (53%), Gaps = 3/102 (2%) Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLE 265 I G E R+GY + +LG N GKS+L N L + ++I P TTRD +L I + Sbjct: 4 IKSGAPDEGYRSGY-VALLGRPNVGKSTLLNHLVGQKISITAPRPQTTRDQILGILTRPD 62 Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307 G L+ + DT G+ + + ++ T +E+ADL +L+ E Sbjct: 63 GQLLFL-DTPGVHSGYRSLNRHLLRATRGALESADLGVLVVE 103 >gi|197122704|ref|YP_002134655.1| small GTP-binding protein [Anaeromyxobacter sp. K] gi|196172553|gb|ACG73526.1| small GTP-binding protein [Anaeromyxobacter sp. K] Length = 688 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 1/85 (1%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273 +++ ++++G+ N GKS LF AL K V V++ PGTT +V +EG + D Sbjct: 20 QVVSAARSVILVGNPNVGKSVLFGALTGKYVT-VSNYPGTTVEVTRGSATIEGRPWHVMD 78 Query: 274 TAGIRETDDIVEKEGIKRTFLEVEN 298 T G + E E + R L VE Sbjct: 79 TPGTNNLLPMSEDEQVTRDILLVER 103 >gi|298245801|ref|ZP_06969607.1| GTP-binding proten HflX [Ktedonobacter racemifer DSM 44963] gi|297553282|gb|EFH87147.1| GTP-binding proten HflX [Ktedonobacter racemifer DSM 44963] Length = 433 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 56/207 (27%), Positives = 93/207 (44%), Gaps = 23/207 (11%) Query: 199 LKNDISSHISQGKLG--EIIRNGYKIV-ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255 L+ +I SQ L + + G +V ++G++NAGKS+LFNAL + V + D T Sbjct: 189 LRKEIEEARSQRALQRKQRVAQGLPVVAVVGYTNAGKSTLFNALTEAGV-LAEDKLFATL 247 Query: 256 DVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314 D +T L L +SDT G + + T EV ADL+L + +I+ + Sbjct: 248 DPVTRRLLLPNNQEALLSDTVGFIQKLPTQLIAAFRATLEEVIEADLLLEVVDISHENAF 307 Query: 315 SFPKNIDFIF--IGTKSDLYSTYTEEYDHL----------------ISSFTGEGLEELIN 356 + + I +G + T + D L IS+ G+GLEEL Sbjct: 308 EQSETVHDILDELGAAAKPRVTALNKIDLLTDPDALDPSLYSHAVPISAAEGKGLEELCA 367 Query: 357 KIKSILSNKFKKLPFSIPSHKRHLYHL 383 ++ S+L++ ++L +P + L L Sbjct: 368 EVASVLADTMEQLTVLLPFSRGDLVEL 394 >gi|215430606|ref|ZP_03428525.1| GTP-binding protein EngA [Mycobacterium tuberculosis EAS054] gi|219557637|ref|ZP_03536713.1| GTP-binding protein EngA [Mycobacterium tuberculosis T17] gi|289569764|ref|ZP_06449991.1| GTP-binding protein engA [Mycobacterium tuberculosis T17] gi|289753804|ref|ZP_06513182.1| GTP-binding protein EngA [Mycobacterium tuberculosis EAS054] gi|289543518|gb|EFD47166.1| GTP-binding protein engA [Mycobacterium tuberculosis T17] gi|289694391|gb|EFD61820.1| GTP-binding protein EngA [Mycobacterium tuberculosis EAS054] Length = 463 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/84 (28%), Positives = 43/84 (51%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+L N + + A+V DIPG TRD + D G + DT G Sbjct: 29 VAVVGRPNVGKSTLVNRILGRREAVVQDIPGVTRDRVCYDALWTGRRFVVQDTGGWEPNA 88 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 +++ ++ + + AD ++L+ Sbjct: 89 KGLQRLVAEQASVAMRTADAVILV 112 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 35/59 (59%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 ++ ++G N GKSSL N LA ++V + GTT D + ++L G + + DTAG+R Sbjct: 201 RVALVGKPNVGKSSLLNKLAGDQRSVVHEAAGTTVDPVDSLIELGGDVWRFVDTAGLRR 259 >gi|222529401|ref|YP_002573283.1| GTP-binding protein Era [Caldicellulosiruptor bescii DSM 6725] gi|312622365|ref|YP_004023978.1| GTP-binding protein era [Caldicellulosiruptor kronotskyensis 2002] gi|254783286|sp|B9MS56|ERA_ANATD RecName: Full=GTPase Era gi|222456248|gb|ACM60510.1| GTP-binding protein Era [Caldicellulosiruptor bescii DSM 6725] gi|312202832|gb|ADQ46159.1| GTP-binding protein Era [Caldicellulosiruptor kronotskyensis 2002] Length = 300 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 51/208 (24%), Positives = 96/208 (46%), Gaps = 31/208 (14%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 ++G+ + ++G N GKS+L N L K ++I++ P TTR+ + L LE + DT G Sbjct: 4 KSGF-VALIGRPNVGKSTLMNYLVGKKISIISPKPQTTRNSIKGILTLEDAQIIFIDTPG 62 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKE-------------INSKKEISFPKNIDFI 323 + + + + +K + ++ DLIL + E I KE+ PK I Sbjct: 63 VHPPKNKLGEYMVKVSEKTLKEVDLILYIVEAIDNGIGPWDEAIIERLKEVETPK----I 118 Query: 324 FIGTKSDLYSTYTEE-----------YDHL--ISSFTGEGLEELINKIKSILSNKFKKLP 370 + KSDL S E ++ + I++ G + L++KIK +L K Sbjct: 119 LVLNKSDLASKENIEILKSIFSTKLNFESIVDIAAINGYNCDLLLDKIKELLPEGPKYYL 178 Query: 371 FSIPSHKRHLYHLSQTVRYLEMASLNEK 398 + + R + +++ +R + +L+E+ Sbjct: 179 DDMTTDVRESFIVAEIIREKILLNLSEE 206 >gi|148242816|ref|YP_001227973.1| GTP-binding protein Era-like protein [Synechococcus sp. RCC307] gi|147851126|emb|CAK28620.1| GTP-binding protein era homolog [Synechococcus sp. RCC307] Length = 309 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 42/164 (25%), Positives = 71/164 (43%), Gaps = 24/164 (14%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R+G+ + ++G N GKS+L N L + VAI + + TTR+ L L E + + DT G Sbjct: 18 RSGF-VALVGRPNVGKSTLLNQLVGEKVAITSPVAQTTRNRLRAILTTECSQLVLVDTPG 76 Query: 277 IRETDDIVEKEGIKRTFLEVENADLIL------------------LLKEINSKKEISFPK 318 I + ++ + +K + D++L LLK I I K Sbjct: 77 IHKPHHLLGERLVKTARNSIGEVDVVLALMDGSEPMGRGDQFVLDLLKSIRQPVVIGLNK 136 Query: 319 NIDFIFIGTKSDLYSTYTEEYDHL----ISSFTGEGLEELINKI 358 D I + +L ++Y+E S+ TG+G L+ + Sbjct: 137 Q-DLIAEEQREELNASYSEVLPDAPLLPFSALTGDGCSALVEAL 179 >gi|167037775|ref|YP_001665353.1| GTP-binding protein Era [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167039985|ref|YP_001662970.1| GTP-binding protein Era [Thermoanaerobacter sp. X514] gi|256751969|ref|ZP_05492839.1| GTP-binding protein Era [Thermoanaerobacter ethanolicus CCSD1] gi|300914075|ref|ZP_07131391.1| GTP-binding protein Era [Thermoanaerobacter sp. X561] gi|307724692|ref|YP_003904443.1| GTP-binding protein Era [Thermoanaerobacter sp. X513] gi|320116190|ref|YP_004186349.1| GTP-binding protein Era [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|226741400|sp|B0KA54|ERA_THEP3 RecName: Full=GTPase Era gi|226741401|sp|B0K708|ERA_THEPX RecName: Full=GTPase Era gi|166854225|gb|ABY92634.1| GTP-binding protein Era [Thermoanaerobacter sp. X514] gi|166856609|gb|ABY95017.1| GTP-binding protein Era [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256749174|gb|EEU62208.1| GTP-binding protein Era [Thermoanaerobacter ethanolicus CCSD1] gi|300889010|gb|EFK84156.1| GTP-binding protein Era [Thermoanaerobacter sp. X561] gi|307581753|gb|ADN55152.1| GTP-binding protein Era [Thermoanaerobacter sp. X513] gi|319929281|gb|ADV79966.1| GTP-binding protein Era [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 302 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 6/93 (6%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G +N GKS+L NA+ ++ +AI + P TTR+ + L + Y V DT GI + Sbjct: 8 VALVGRTNVGKSTLLNAILQEKIAITSPKPQTTRNTIRGILTTDEYQVIFVDTPGIHKPK 67 Query: 282 DIVEK---EGIKRTFLEVENADLILLLKEINSK 311 + + E KRT EV DLIL + E +++ Sbjct: 68 SKLSEFMIEVAKRTLKEV---DLILYMIEPDTE 97 >gi|319892654|ref|YP_004149529.1| GTP-binding protein YqeH, required for biogenesis of 30S ribosome subunit [Staphylococcus pseudintermedius HKU10-03] gi|317162350|gb|ADV05893.1| GTP-binding protein YqeH, required for biogenesis of 30S ribosome subunit [Staphylococcus pseudintermedius HKU10-03] Length = 366 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 8/66 (12%) Query: 217 RNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 RNG + I+G +N GKS+L N L +K+V + IPGTT D++ I +D Y+ Sbjct: 158 RNGQDVYIVGTTNVGKSTLINKLIEQTVGEKNVVTTSRIPGTTLDMIDIPIDDNHYMY-- 215 Query: 272 SDTAGI 277 DT GI Sbjct: 216 -DTPGI 220 >gi|256425495|ref|YP_003126148.1| GTP-binding protein Era [Chitinophaga pinensis DSM 2588] gi|256040403|gb|ACU63947.1| GTP-binding protein Era [Chitinophaga pinensis DSM 2588] Length = 289 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 49/184 (26%), Positives = 85/184 (46%), Gaps = 19/184 (10%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 I G +NAGKS+L NAL + +AIV+ TTR +T + Y + SDT GI + Sbjct: 9 IFGKANAGKSTLMNALVGEKLAIVSPKVQTTRHRITGVVTTPEYQIVFSDTPGIIDPRYR 68 Query: 284 VEKEGIKRTFLEVENADLILLLKEI--NSKKEISFPKNIDF----IFIGTKSDLYS---- 333 + ++ + +E+AD+ +L+ ++ N ++ +S ++ I + KSDL Sbjct: 69 LHEKMMGAVKSALEDADVAMLIMDVKDNLEENLSLFASLKLKARTILVLNKSDLLMKEEL 128 Query: 334 ----TYTEEYDH-----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384 EE+ LIS+ G+G+ L+ I +L P + K + + Sbjct: 129 DVLVKKCEEWGKAEKVVLISAMQGKGVPALLQTIVGMLPESEPFYPEDTLTDKSTRFFVG 188 Query: 385 QTVR 388 + VR Sbjct: 189 EIVR 192 >gi|164687205|ref|ZP_02211233.1| hypothetical protein CLOBAR_00846 [Clostridium bartlettii DSM 16795] gi|164603629|gb|EDQ97094.1| hypothetical protein CLOBAR_00846 [Clostridium bartlettii DSM 16795] Length = 407 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 52/167 (31%), Positives = 80/167 (47%), Gaps = 24/167 (14%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280 I I G NAGKSS+ NA+ +D+AIV+D+ GTT D ++ ++L V I DT G+ Sbjct: 14 IGIFGKRNAGKSSVINAITDQDLAIVSDVKGTTTDPVSKAMELLPLGPVMIIDTPGL--- 70 Query: 281 DDIVE--KEGIKRTFLEVENADLILLL--------KEINSKKEISFPKNIDFIFIGTKSD 330 DD+ E K +++++ + D+ +L+ + N+ E K I +I + K D Sbjct: 71 DDVGELGKMRVQKSYQVLNKTDIGILVIDGLVGPTPQDNTLIEKFKEKKIPYIVVMNKLD 130 Query: 331 LYSTYTEEYD-------HLISSFTGEG---LEELINKIKSILSNKFK 367 L E +SS T E L+ELI K KF+ Sbjct: 131 LVREKGIELPLEDSPNTMWVSSVTKENIYELKELIAKQAPTDEAKFQ 177 >gi|150018074|ref|YP_001310328.1| small GTP-binding protein [Clostridium beijerinckii NCIMB 8052] gi|149904539|gb|ABR35372.1| small GTP-binding protein [Clostridium beijerinckii NCIMB 8052] Length = 412 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 83/172 (48%), Gaps = 31/172 (18%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAGIRET 280 I + G +NAGKSS+ NAL ++++IV+D+ GTT D + ++ L I DTAG+ + Sbjct: 14 IALFGMTNAGKSSIINALTNQEISIVSDVKGTTTDPVYKAIEILPIGPCMIIDTAGLDDE 73 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE------------INSKKEISFPKNIDFIFIGTK 328 ++ E K+T + D+ L++ + I+ KE K I I I K Sbjct: 74 SELGESRK-KKTIEVLSKTDVALVVVDATVGVTENDRSIIDQIKE----KKIPTICIFNK 128 Query: 329 SDLYSTYTEEYDHL----------ISSFTGEGLEELINKIKSILS---NKFK 367 +D + EE + +S+ G++EL KI S++ +KFK Sbjct: 129 ADKKNIEKEELAEIEKTIGTTVVSVSALNKNGIDELKQKIISVIPDNEDKFK 180 >gi|323464308|gb|ADX76461.1| GTP-binding protein, putative [Staphylococcus pseudintermedius ED99] Length = 366 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 8/66 (12%) Query: 217 RNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 RNG + I+G +N GKS+L N L +K+V + IPGTT D++ I +D Y+ Sbjct: 158 RNGQDVYIVGTTNVGKSTLINKLIEQTVGEKNVVTTSRIPGTTLDMIDIPIDDNHYMY-- 215 Query: 272 SDTAGI 277 DT GI Sbjct: 216 -DTPGI 220 >gi|114704716|ref|ZP_01437624.1| GTP-binding protein [Fulvimarina pelagi HTCC2506] gi|114539501|gb|EAU42621.1| GTP-binding protein [Fulvimarina pelagi HTCC2506] Length = 470 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 26/56 (46%), Positives = 33/56 (58%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 I I+G N GKS+LFN L K +A+V D PG TRD + L +I DTAG+ Sbjct: 4 IAIIGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDRRPGEGRLMDLSFEIVDTAGL 59 Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 38/66 (57%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ I+G NAGKS+L N + ++ + G TRD ++++ + G KI DTAG+R Sbjct: 200 RMAIVGRPNAGKSTLVNRMLGEERMLTGPEAGITRDSISVEWEWRGRHFKIFDTAGLRRK 259 Query: 281 DDIVEK 286 + EK Sbjct: 260 ARVQEK 265 >gi|227498623|ref|ZP_03928767.1| GTP-binding protein era [Acidaminococcus sp. D21] gi|226904079|gb|EEH89997.1| GTP-binding protein era [Acidaminococcus sp. D21] Length = 306 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 1/96 (1%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R GY I ++G NAGKS+L + L + AIV+D P TTR+ + L E + DT G Sbjct: 9 RAGY-IAVIGRPNAGKSTLIDKLIGEKAAIVSDRPQTTRNRILCILSTEKAQLIFLDTPG 67 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312 + + D + + +K +++ D +L + + K+ Sbjct: 68 LHKPKDKLGEHMVKAAEDSLKDVDAVLYVVDATEKR 103 >gi|88607820|ref|YP_504957.1| GTP-binding protein Era [Anaplasma phagocytophilum HZ] gi|88598883|gb|ABD44353.1| GTP-binding protein Era [Anaplasma phagocytophilum HZ] Length = 305 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 41/159 (25%), Positives = 75/159 (47%), Gaps = 21/159 (13%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G +NAGKS+L N L +IVT+ TTR + L+ + +DT GI Sbjct: 22 VAVVGMTNAGKSTLINKLVGFKASIVTNKVHTTRVKMNSVLNEGNVQLVFTDTPGIFSPK 81 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK--------NIDFIFIGTKSDL-- 331 +EK +K ++ ++ AD+++L+ + + + K N+ I + K DL Sbjct: 82 TKLEKFIVKNAWMSMKGADMVILVLDAKRRICVHVEKIIKRLQRDNVASIAVINKMDLLD 141 Query: 332 ---YSTYTEEYDHL--------ISSFTGEGLEELINKIK 359 +T+ E L +SS G G+ +LI+ ++ Sbjct: 142 EGELATFAERVQLLHKFDRVFTVSSLYGTGVRDLIDYLQ 180 >gi|331086300|ref|ZP_08335380.1| hypothetical protein HMPREF0987_01683 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406066|gb|EGG85589.1| hypothetical protein HMPREF0987_01683 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 405 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 33/86 (38%), Positives = 52/86 (60%), Gaps = 4/86 (4%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTAGIRE 279 I I G NAGKSSL NAL +++AIV+DI GTT D + ++L G +V I DT G+ + Sbjct: 14 IGIFGKRNAGKSSLINALTGQNLAIVSDIKGTTTDPVLKSMELLPLGPVVLI-DTPGLDD 72 Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305 + E +++T+ + D+ +L+ Sbjct: 73 HGPLGELR-VQKTYQMLNKTDIAILV 97 >gi|167752992|ref|ZP_02425119.1| hypothetical protein ALIPUT_01255 [Alistipes putredinis DSM 17216] gi|167659306|gb|EDS03436.1| hypothetical protein ALIPUT_01255 [Alistipes putredinis DSM 17216] Length = 394 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 33/123 (26%), Positives = 61/123 (49%), Gaps = 7/123 (5%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280 I G N+GKSSL NAL + A+V+ PGTT D + +++ G + DT G + Sbjct: 13 IAFYGRRNSGKSSLINALTGQQSAVVSATPGTTTDPVLKTMEIHGLGPCVLIDTPGFDDE 72 Query: 281 DDI-VEKEGIKRTFLEVENADLILLLKEINSKKEISF-----PKNIDFIFIGTKSDLYST 334 D+ + R L+ + ++LL + EI + ++I + + +K+DL++ Sbjct: 73 GDLGALRVQQSRKMLDKTDLAVLLLSGAVPQNDEIEWFRLLEARHIPIVVVRSKADLFTG 132 Query: 335 YTE 337 ++ Sbjct: 133 MSD 135 >gi|119964121|ref|YP_947439.1| GTP-binding protein EngA [Arthrobacter aurescens TC1] gi|254783134|sp|A1R5C7|DER_ARTAT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|119950980|gb|ABM09891.1| putative GTP-binding protein Era [Arthrobacter aurescens TC1] Length = 491 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 3/92 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I ++G N GKSSL N LA + +V + GTTRD + ++L + DTAGIR Sbjct: 230 RIALIGRPNVGKSSLLNKLAGSERVVVDPLAGTTRDPVDEFIELGDRTWRFVDTAGIRRR 289 Query: 281 DDIVEKEGIK---RTFLEVENADLILLLKEIN 309 + + RT +E A++ ++L ++ Sbjct: 290 QHMAQGADFYASLRTQAALEKAEVAVVLLAVD 321 Score = 43.9 bits (102), Expect = 0.046, Method: Compositional matrix adjust. Identities = 39/160 (24%), Positives = 65/160 (40%), Gaps = 21/160 (13%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+L N + + A+V D PG TRD + G + DT G Sbjct: 56 LAIIGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVMYSARWNGRNFTLVDTGGWEHDA 115 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI----------------NSKKEISFPKNI--DFI 323 + ++ + VE AD +L + + SKK + N DF Sbjct: 116 KGIHARVAEQAEMAVELADAVLFVVDSAVGATATDEGVMKMLRKSKKPVIMVANKVDDFA 175 Query: 324 FIGTKSDLYS-TYTEEYDHLISSFTGEGLEELINKIKSIL 362 + L+ + E Y +S+ G G+ +L++ + L Sbjct: 176 QEADSATLWGLGFGEPYP--VSALHGRGVADLLDHVMDTL 213 >gi|56551244|ref|YP_162083.1| GTP-binding proten HflX [Zymomonas mobilis subsp. mobilis ZM4] gi|56542818|gb|AAV88972.1| GTP-binding proten HflX [Zymomonas mobilis subsp. mobilis ZM4] Length = 460 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 81/186 (43%), Gaps = 36/186 (19%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI-SDTAGIRET 280 + ++G++NAGKS+LFN + DV + D+ T D + L G I SDT G Sbjct: 211 VALVGYTNAGKSTLFNRMTGADV-MAKDLLFATLDPTMRQITLPGIDKAILSDTVGF--V 267 Query: 281 DDIVEK--EGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF--IG---------- 326 D+ + + T EV ADLIL +++I + S ++++ + IG Sbjct: 268 SDLPTQLVAAFRATLEEVTAADLILHVRDIAQEDSESEREDVERVLAEIGIAPVEDGGEF 327 Query: 327 --------TKSDLYSTYTEEY----------DHLISSFTGEGLEELINKIKSILSNKFKK 368 KSDL S E LIS++TGEG+E+L + LS + Sbjct: 328 AIPVIEAWNKSDLLSEEAHESLAAEAARRDDVALISAWTGEGIEDLRELVSQRLSEAHRL 387 Query: 369 LPFSIP 374 IP Sbjct: 388 RHIDIP 393 >gi|330467062|ref|YP_004404805.1| GTP-binding protein Der [Verrucosispora maris AB-18-032] gi|328810033|gb|AEB44205.1| GTP-binding protein Der [Verrucosispora maris AB-18-032] Length = 467 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 30/55 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 + ++G N GKS+L N + + A+V D+PG TRD + D G + DT G Sbjct: 27 VAVVGRPNVGKSTLVNRIIGRRQAVVEDVPGVTRDRIPYDAQWSGRSFTVVDTGG 81 Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 36/63 (57%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R ++ ++G N GKSSL N + ++ A+V + GTT D + + + G + DTAG Sbjct: 196 RGPRRVALVGRPNVGKSSLLNRFSGEERAVVDSVAGTTVDPVDSLVTIGGETWHLVDTAG 255 Query: 277 IRE 279 +R+ Sbjct: 256 LRK 258 >gi|225631158|ref|ZP_03787866.1| GTP-binding protein Era [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225591145|gb|EEH12319.1| GTP-binding protein Era [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 294 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 44/170 (25%), Positives = 75/170 (44%), Gaps = 33/170 (19%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I G NAGKS+L N++ K +AIVT TTR + V +D+ GI + Sbjct: 9 VTIAGLPNAGKSTLINSIIGKKIAIVTPKVQTTRTQIRGVATCNNTQVVFTDSPGIFSAE 68 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNID---------------FIFIG 326 +EK ++ + V+++D+ LLL +++ + KNI+ I + Sbjct: 69 TKLEKALVRSAWSAVKDSDITLLLVDVS-----HYLKNIERIKTIFMRLQRTKGRCILVI 123 Query: 327 TKSDLYST-------------YTEEYDHLISSFTGEGLEELINKIKSILS 363 K+DL Y E +IS+ +GL +L+N + + S Sbjct: 124 NKTDLVKRPELKMAHEHLNLLYKFEKVFMISALKNDGLSDLMNYLSEVAS 173 >gi|28210676|ref|NP_781620.1| ferrous iron transport protein B [Clostridium tetani E88] gi|28203114|gb|AAO35557.1| ferrous iron transport protein B [Clostridium tetani E88] Length = 587 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 10/85 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY---LVKISDTAGIR 278 + ++G+ N GK+SLFNAL + V + G T + EGY LVKI D GI Sbjct: 4 VALVGNPNVGKTSLFNALTGSN-QYVGNWAGVTVE------KKEGYIDNLVKIVDLPGIY 56 Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303 D +E + + +L EN D+IL Sbjct: 57 AMDTYSNEEKVSKNYLSTENIDVIL 81 >gi|86157990|ref|YP_464775.1| small GTP-binding protein domain-containing protein [Anaeromyxobacter dehalogenans 2CP-C] gi|85774501|gb|ABC81338.1| small GTP-binding protein domain protein [Anaeromyxobacter dehalogenans 2CP-C] Length = 688 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 1/85 (1%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273 +++ ++++G+ N GKS LF AL K V V++ PGTT +V +EG + D Sbjct: 20 QVVAAARSVILVGNPNVGKSVLFGALTGKYVT-VSNYPGTTVEVTRGSATIEGRPWHVMD 78 Query: 274 TAGIRETDDIVEKEGIKRTFLEVEN 298 T G + E E + R L VE Sbjct: 79 TPGTNNLLPMSEDEQVTRDILLVER 103 >gi|108804343|ref|YP_644280.1| GTP-binding protein Era [Rubrobacter xylanophilus DSM 9941] gi|108765586|gb|ABG04468.1| GTP-binding protein Era [Rubrobacter xylanophilus DSM 9941] Length = 301 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 27/100 (27%), Positives = 51/100 (51%), Gaps = 1/100 (1%) Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272 GE R+G+ + ++G N GKS+L N L + ++I++ P TTR + + GY Sbjct: 5 GEGFRSGF-VAVVGRPNVGKSTLVNRLVGQKISIISSRPQTTRSPIRGVRNGPGYQAVFV 63 Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312 DT G ++ D + +R + +D++L + + + K Sbjct: 64 DTPGSQKPRDTLRARMQERVLDSLSESDVVLFMLDASQAK 103 >gi|331653414|ref|ZP_08354415.1| conserved hypothetical protein [Escherichia coli M718] gi|331048263|gb|EGI20339.1| conserved hypothetical protein [Escherichia coli M718] Length = 306 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282 I+G S AGKSSL NAL + +V V+D+ TR+V L+ G+ + I+D G+ E+ D Sbjct: 57 IMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQRFRLNGHGHSMVITDLPGVGESRD 115 >gi|218699419|ref|YP_002407048.1| putative GTP-binding domain [Escherichia coli IAI39] gi|218369405|emb|CAR17164.1| conserved hypothetical protein; putative GTP-binding domain [Escherichia coli IAI39] Length = 311 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282 I+G S AGKSSL NAL + +V V+D+ TR+V L+ G+ + I+D G+ E+ D Sbjct: 62 IMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQRFRLNGHGHSMVITDLPGVGESRD 120 >gi|296117980|ref|ZP_06836563.1| ribosome-associated GTPase EngA [Corynebacterium ammoniagenes DSM 20306] gi|295969211|gb|EFG82453.1| ribosome-associated GTPase EngA [Corynebacterium ammoniagenes DSM 20306] Length = 539 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 41/84 (48%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKSSL N + A+V D PG TRD ++ D G + DT G Sbjct: 106 VAIVGRPNVGKSSLVNRFLGRREAVVEDHPGVTRDRISYIGDWNGQRFFVQDTGGWDPNA 165 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + ++ + +E AD+I+ + Sbjct: 166 KGIHGAIARQAEVAMETADVIVFV 189 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 70/130 (53%), Gaps = 15/130 (11%) Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250 +VL+++L L + H S I ++ ++G N GKSSL N + ++ ++V ++ Sbjct: 254 DVLDEVLKLFPEQPRHSS------ITAGPRRVALVGKPNVGKSSLLNKITGQERSVVDNV 307 Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIK-----RTFLEVENADLILLL 305 GTT D + + L+ L + DTAG+R+ + +G + RT ++ A++ ++L Sbjct: 308 SGTTVDPVDSLVQLDKQLWRFVDTAGLRKK--VKNAQGHEYYASLRTRGVIDAAEVCVML 365 Query: 306 KEINSKKEIS 315 I++ +EIS Sbjct: 366 --IDASQEIS 373 >gi|83589464|ref|YP_429473.1| GTP-binding protein Era [Moorella thermoacetica ATCC 39073] gi|83572378|gb|ABC18930.1| GTP-binding protein Era [Moorella thermoacetica ATCC 39073] Length = 301 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 1/66 (1%) Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 + E R+G+ +I G NAGKS+L N L + VAI++D P TTR+ + L Y + Sbjct: 1 MAEAYRSGFAGLI-GRPNAGKSTLLNRLVGRKVAIMSDKPQTTRNKILGVLTATAYQIVF 59 Query: 272 SDTAGI 277 DT GI Sbjct: 60 LDTPGI 65 >gi|189218239|ref|YP_001938881.1| GTP-binding protein protease modulator [Methylacidiphilum infernorum V4] gi|189185097|gb|ACD82282.1| GTP-binding protein protease modulator [Methylacidiphilum infernorum V4] Length = 432 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 75/171 (43%), Gaps = 20/171 (11%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 ++G++NAGKS+LFN L V + + T + + GY + +SDT G + Sbjct: 204 LVGYTNAGKSTLFNRLTNAHVLVEDKLFATLDPTIRLFEFSGGYKIFLSDTVGFIQKLPH 263 Query: 284 VEKEGIKRTFLEVENADLILLL------------KEINSKKEISFPKNIDFIFIGTKSDL 331 E K T EV ADL++ L E+N E + I + K DL Sbjct: 264 HLIESFKATLEEVTEADLLIHLVDVSHPWAETQINEVNKVLEQIGAIHKPTILVWNKIDL 323 Query: 332 YST------YTEEYDH--LISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374 +T EEY IS+ TG G E L+ KI+ L ++ + L +P Sbjct: 324 VNTSGLIKRRIEEYPGSVPISAATGFGCENLLVKIEEWLKSQRRFLSLKLP 374 >gi|256832283|ref|YP_003161010.1| GTP-binding proten HflX [Jonesia denitrificans DSM 20603] gi|256685814|gb|ACV08707.1| GTP-binding proten HflX [Jonesia denitrificans DSM 20603] Length = 509 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 49/181 (27%), Positives = 83/181 (45%), Gaps = 30/181 (16%) Query: 222 IVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG- 276 + I+G++NAGKSSL NAL V A+ + T R T D G + ++DT G Sbjct: 289 VAIVGYTNAGKSSLLNALTGAGVLVQNALFATLDPTVRRTKTPD----GRVYTLADTVGF 344 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL---------KEINSKK----EISFPKNIDFI 323 +R + E + T E +AD+I+ + +I + + +I +I I Sbjct: 345 VRHLPHQL-VEAFRSTLEETADADIIVHVVDGAHPDPAGQIAAVRTVLADIDGVSDIPEI 403 Query: 324 FIGTKSDLYST------YTEEYD-HLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376 + K+D+ + E D +S+ TG G+EEL+ I IL ++ ++P H Sbjct: 404 IVVNKADIAPPEAIAQIRSMERDVWAVSAHTGAGIEELLGHIADILPAPGVEIHLTVPYH 463 Query: 377 K 377 + Sbjct: 464 R 464 >gi|227504288|ref|ZP_03934337.1| GTP-binding protein EngA [Corynebacterium striatum ATCC 6940] gi|227199127|gb|EEI79175.1| GTP-binding protein EngA [Corynebacterium striatum ATCC 6940] Length = 541 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 6/89 (6%) Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250 +VL++IL L + H S I ++ ++G N GKSSL N L ++ ++V + Sbjct: 254 DVLDEILRLFPEEPRHAS------ITSGPRRVALVGKPNVGKSSLLNKLTSEERSVVDNA 307 Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 GTT D + + L+ L K DTAG+R+ Sbjct: 308 AGTTVDPVDSLVQLDQRLWKFIDTAGLRK 336 Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust. Identities = 24/84 (28%), Positives = 40/84 (47%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKSSL N + A+V D PG TRD ++ + G + DT G Sbjct: 106 VAVVGRPNVGKSSLVNRFLGRREAVVEDHPGVTRDRVSYVAEWNGQRFFVQDTGGWDPNV 165 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + ++ L + AD+I+ + Sbjct: 166 KGIHAAIARQAELAMNTADVIVFV 189 >gi|293400673|ref|ZP_06644818.1| GTP-binding protein Era [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305699|gb|EFE46943.1| GTP-binding protein Era [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 301 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 1/85 (1%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 ++G+ I I+G NAGKS+L NAL + +AI T P TTR+ ++ L E +DT G Sbjct: 4 KSGF-IAIIGRPNAGKSTLLNALLNEKIAITTPKPQTTRNNISGILTREDAQFIFTDTPG 62 Query: 277 IRETDDIVEKEGIKRTFLEVENADL 301 I + + K + + + AD+ Sbjct: 63 IHKPKHELGKTLNRNAYTAIAEADV 87 >gi|162148045|ref|YP_001602506.1| GTP-binding protein hflX [Gluconacetobacter diazotrophicus PAl 5] gi|161786622|emb|CAP56204.1| GTP-binding protein hflX [Gluconacetobacter diazotrophicus PAl 5] Length = 428 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 47/179 (26%), Positives = 81/179 (45%), Gaps = 29/179 (16%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280 + ++G++NAGKS+LFNAL V D T D + L G + +SDT G Sbjct: 204 VALVGYTNAGKSTLFNALTGATV-FAQDQLFATLDPTMRGIRLPSGRRIILSDTVGF--I 260 Query: 281 DDIVEK--EGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIG------------ 326 D+ + + T EV AD+IL +++I+ + +++ + G Sbjct: 261 SDLPTELIAAFRATLEEVAEADVILHVRDISHPDSAAQRADVEDVLEGMAGSGTLEDDWR 320 Query: 327 -------TKSDLY----STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374 K+DL + + +IS+ TGEGL +L+ I S L+ + + ++IP Sbjct: 321 RRVIEVQNKADLIGGRDAVPPRKGSVVISAITGEGLPDLLAAIDSRLTEAMETVRYTIP 379 >gi|331697587|ref|YP_004333826.1| GTP-binding protein engA [Pseudonocardia dioxanivorans CB1190] gi|326952276|gb|AEA25973.1| GTP-binding protein engA [Pseudonocardia dioxanivorans CB1190] Length = 486 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 42/84 (50%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+L N L + A+V D+PG TRD ++ D G + DT G Sbjct: 49 LAVVGRPNVGKSTLVNRLIGRREAVVQDVPGVTRDRISYDALWNGRRFTLVDTGGWEPDA 108 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + L + AD ++L+ Sbjct: 109 TGLQGAVAAQAELAMRTADAVMLV 132 Score = 43.9 bits (102), Expect = 0.055, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 39/59 (66%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 ++ ++G N GKSSL N ++ + ++V D+ GTT D + ++L+G + + DTAG+R+ Sbjct: 223 RVALVGKPNVGKSSLLNKVSGELRSVVHDVAGTTVDPVDSLVELDGEIWRFVDTAGLRK 281 >gi|307266976|ref|ZP_07548493.1| GTP-binding protein Era [Thermoanaerobacter wiegelii Rt8.B1] gi|306918025|gb|EFN48282.1| GTP-binding protein Era [Thermoanaerobacter wiegelii Rt8.B1] Length = 302 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 6/93 (6%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G +N GKS+L NA+ ++ +AI + P TTR+ + L + Y V DT GI + Sbjct: 8 VALVGRTNVGKSTLLNAILQEKIAITSPKPQTTRNTIHGILTTDEYQVIFVDTPGIHKPK 67 Query: 282 DIVEK---EGIKRTFLEVENADLILLLKEINSK 311 + + E KRT EV DLIL + E +++ Sbjct: 68 SKLSEFMIEVAKRTLKEV---DLILYMIEPDTE 97 >gi|294786930|ref|ZP_06752184.1| ribosome-associated GTPase EngA [Parascardovia denticolens F0305] gi|315226567|ref|ZP_07868355.1| ribosome-associated GTPase EngA [Parascardovia denticolens DSM 10105] gi|294485763|gb|EFG33397.1| ribosome-associated GTPase EngA [Parascardovia denticolens F0305] gi|315120699|gb|EFT83831.1| ribosome-associated GTPase EngA [Parascardovia denticolens DSM 10105] Length = 734 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 32/55 (58%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 I ++G N GKS+L N + AIV D PG TRD ++ + + G+ K+ DT G Sbjct: 287 IAVIGRPNVGKSTLVNRVLGHRAAIVEDTPGVTRDRVSYEAEWAGHDFKLVDTGG 341 Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 52/92 (56%), Gaps = 11/92 (11%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGIR 278 ++ ++G N GKSSL N LA ++ ++V D+ GTTRD + I + E +L DTAGI+ Sbjct: 461 RVALIGRPNVGKSSLLNQLAHENRSVVNDLAGTTRDPVDEVITIGDEKWL--FIDTAGIK 518 Query: 279 ETDDIVEKEGIK-----RTFLEVENADLILLL 305 + ++ G RT +E ++L L+L Sbjct: 519 RR--LHKQSGADYYSSLRTQAAIERSELALVL 548 >gi|312793589|ref|YP_004026512.1| gtp-binding protein era [Caldicellulosiruptor kristjanssonii 177R1B] gi|312875914|ref|ZP_07735904.1| GTP-binding protein Era [Caldicellulosiruptor lactoaceticus 6A] gi|311797395|gb|EFR13734.1| GTP-binding protein Era [Caldicellulosiruptor lactoaceticus 6A] gi|312180729|gb|ADQ40899.1| GTP-binding protein Era [Caldicellulosiruptor kristjanssonii 177R1B] Length = 300 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 51/208 (24%), Positives = 96/208 (46%), Gaps = 31/208 (14%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 ++G+ + ++G N GKS+L N L K ++I++ P TTR+ + L LE + DT G Sbjct: 4 KSGF-VALIGRPNVGKSTLMNYLVGKKISIISPKPQTTRNSIKGILTLEDAQIIFIDTPG 62 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKE-------------INSKKEISFPKNIDFI 323 + + + + +K + ++ DLIL + E I KE+ PK I Sbjct: 63 VHPPKNKLGEYMVKVSEKTLKEVDLILYIVEAIDNGIGPWDEAIIEKLKEVETPK----I 118 Query: 324 FIGTKSDLYSTYTEE-----------YDHL--ISSFTGEGLEELINKIKSILSNKFKKLP 370 + KSDL S E ++ + I++ G + L++KIK +L K Sbjct: 119 LVLNKSDLASKENIEILKSIFSTKLNFESIVDIAAINGYNCDLLLSKIKELLPEGPKYYL 178 Query: 371 FSIPSHKRHLYHLSQTVRYLEMASLNEK 398 + + R + +++ +R + +L+E+ Sbjct: 179 DDMTTDVRESFIVAEIIREKILLNLSEE 206 >gi|332343774|gb|AEE57108.1| conserved hypothetical protein [Escherichia coli UMNK88] Length = 290 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282 I+G S AGKSSL NAL + +V V+D+ TR+V L+ G+ + I+D G+ E+ D Sbjct: 41 IMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQRFRLNGHGHSMVITDLPGVGESRD 99 >gi|326389849|ref|ZP_08211413.1| GTP-binding protein Era [Thermoanaerobacter ethanolicus JW 200] gi|325994117|gb|EGD52545.1| GTP-binding protein Era [Thermoanaerobacter ethanolicus JW 200] Length = 302 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 6/93 (6%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G +N GKS+L NA+ ++ +AI + P TTR+ + L + Y V DT GI + Sbjct: 8 VALVGRTNVGKSTLLNAILQEKIAITSPKPQTTRNTIHGILTTDEYQVIFVDTPGIHKPK 67 Query: 282 DIVEK---EGIKRTFLEVENADLILLLKEINSK 311 + + E KRT EV DLIL + E +++ Sbjct: 68 SKLSEFMIEVAKRTLKEV---DLILYMIEPDTE 97 >gi|217077014|ref|YP_002334730.1| GTP-binding protein Era [Thermosipho africanus TCF52B] gi|226741399|sp|B7IH25|ERA_THEAB RecName: Full=GTPase Era gi|217036867|gb|ACJ75389.1| era GTP-binding protein Era [Thermosipho africanus TCF52B] Length = 299 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 38/149 (25%), Positives = 76/149 (51%), Gaps = 7/149 (4%) Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 +++G+ + + G N GKSS+ NA+ K + IV+D P TTR+ + + + + + DT Sbjct: 1 MKSGF-VALAGKPNVGKSSIVNAIVGKKILIVSDKPQTTRNRINVIHTTDDFQIIFVDTP 59 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTY 335 GI + + + +K ++ DLIL + +++K+ + P+ F ++ T Sbjct: 60 GIHKPLYRLGEYMVKAAVSALKGVDLILTV--VDAKEGVGKPERFVFDYVNQS----KTK 113 Query: 336 TEEYDHLISSFTGEGLEELINKIKSILSN 364 T + I + +E++ N+IK+ L N Sbjct: 114 TIGVINKIDLVDAKKVEQIYNEIKNSLEN 142 >gi|241760903|ref|ZP_04758992.1| GTP-binding proten HflX [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260753127|ref|YP_003226020.1| GTP-binding proten HflX [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|241374522|gb|EER63983.1| GTP-binding proten HflX [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258552490|gb|ACV75436.1| GTP-binding proten HflX [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 460 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 81/186 (43%), Gaps = 36/186 (19%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI-SDTAGIRET 280 + ++G++NAGKS+LFN + DV + D+ T D + L G I SDT G Sbjct: 211 VALVGYTNAGKSTLFNRMTGADV-MAKDLLFATLDPTMRQIALPGIDKAILSDTVGF--V 267 Query: 281 DDIVEK--EGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF--IG---------- 326 D+ + + T EV ADLIL +++I + S ++++ + IG Sbjct: 268 SDLPTQLVAAFRATLEEVTAADLILHVRDIAQEDSESEREDVERVLAEIGIAPVEDGGEF 327 Query: 327 --------TKSDLYSTYTEEY----------DHLISSFTGEGLEELINKIKSILSNKFKK 368 KSDL S E LIS++TGEG+E+L + LS + Sbjct: 328 AIPVIEAWNKSDLLSEEAHESLAAEAARRDDVALISAWTGEGIEDLRELVSQRLSEAHRL 387 Query: 369 LPFSIP 374 IP Sbjct: 388 RHIDIP 393 >gi|258404637|ref|YP_003197379.1| GTP-binding protein EngA [Desulfohalobium retbaense DSM 5692] gi|257796864|gb|ACV67801.1| ribosome-associated GTPase EngA [Desulfohalobium retbaense DSM 5692] Length = 441 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 3/95 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRET 280 + ++G N GKS+LFN L +K A+ D PG TRD L ++ + DT G + + Sbjct: 5 VALIGRRNVGKSTLFNRLIRKQKALTHDRPGVTRDRLYAEVPHGEPPFALVDTGGLVLDE 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 D VE + ++ +E A LIL + ++ ++ +S Sbjct: 65 SDGVEADVFEQAREAMEGAQLILFV--VDGRQGVS 97 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 60/122 (49%), Gaps = 11/122 (9%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 ++ +LG N GKSSL NAL + +V+ GTT D++ + + +G D+AG+R Sbjct: 183 RLALLGRPNVGKSSLINALVGEKRLVVSPEAGTTTDIVDVLFEKKGKRYIFLDSAGVRRR 242 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLLKEI------NSKKEISF--PKNIDFIFIGTKS 329 + DD +E+ + R + A + +L + KK +SF + I FI K Sbjct: 243 SKIDDSLERFSVLRALRNSKRAQVTVLCLDALQGVVGQDKKLLSFLDREKIPFIVAVNKV 302 Query: 330 DL 331 DL Sbjct: 303 DL 304 >gi|209542663|ref|YP_002274892.1| GTP-binding proten HflX [Gluconacetobacter diazotrophicus PAl 5] gi|209530340|gb|ACI50277.1| GTP-binding proten HflX [Gluconacetobacter diazotrophicus PAl 5] Length = 436 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 47/179 (26%), Positives = 81/179 (45%), Gaps = 29/179 (16%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280 + ++G++NAGKS+LFNAL V D T D + L G + +SDT G Sbjct: 212 VALVGYTNAGKSTLFNALTGATV-FAQDQLFATLDPTMRGIRLPSGRRIILSDTVGF--I 268 Query: 281 DDIVEK--EGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIG------------ 326 D+ + + T EV AD+IL +++I+ + +++ + G Sbjct: 269 SDLPTELIAAFRATLEEVAEADVILHVRDISHPDSAAQRADVEDVLEGMAGSGTLEDDWR 328 Query: 327 -------TKSDLY----STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374 K+DL + + +IS+ TGEGL +L+ I S L+ + + ++IP Sbjct: 329 RRVIEVQNKADLIGGRDAVPPRKGSVVISAITGEGLPDLLAAIDSRLTEAMETVRYTIP 387 >gi|114775684|ref|ZP_01451252.1| GTPase [Mariprofundus ferrooxydans PV-1] gi|114553795|gb|EAU56176.1| GTPase [Mariprofundus ferrooxydans PV-1] Length = 433 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 49/175 (28%), Positives = 78/175 (44%), Gaps = 24/175 (13%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIRET 280 + ++G++NAGKS+LFN L DV + + T L + L+L G L + +SDT G + Sbjct: 209 VALVGYTNAGKSTLFNRLTTSDVFVANQLFATLDPTLRL-LELPGGLRLMLSDTVGFVQE 267 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNI---------------DFIFI 325 + + T EV ADLIL +++ + + K + + I Sbjct: 268 LPHELVDAFRATLEEVIEADLILHVRDASDPMQAEHAKVVHDTLQQLGVVGDGAPQVVEI 327 Query: 326 GTKSD----LYSTYTEEYDH---LISSFTGEGLEELINKIKSILSNKFKKLPFSI 373 K D L S + E IS+ TGEGL+EL + + S L +L + Sbjct: 328 LNKKDRVPELASFHGEGITTSRLAISALTGEGLDELTDLLGSWLQRDMHELHLRL 382 >gi|194476719|ref|YP_002048898.1| ferrous iron transport protein B [Paulinella chromatophora] gi|171191726|gb|ACB42688.1| ferrous iron transport protein B [Paulinella chromatophora] Length = 605 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 51/190 (26%), Positives = 88/190 (46%), Gaps = 36/190 (18%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL----TIDLDLEGYLVKISDTAG 276 ++ +LG N GKS+LFNAL+ A + + PG T D+L ID + E + + D G Sbjct: 10 QVALLGMPNTGKSTLFNALSGSH-AHIGNWPGLTVDLLQAEIIIDNNQEEKSIILVDLPG 68 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL---KEINSKKEISFP-KNIDF--IFIGTKSD 330 I + E E + + FL+ DLI+++ +I+ + ++ +N+ + SD Sbjct: 69 IYDLRGFSEDEAVVQRFLDHTPPDLIIIVLNASQIDRQLRLALQIRNLKLPTLVALNMSD 128 Query: 331 LYSTYTEEYDH------------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378 + + DH IS+ G+GL S+LS + +L ++P+ Sbjct: 129 EANRFGVNIDHKALSIGLAMQVLPISAKHGQGL--------SLLSQRIWELLLNLPNS-- 178 Query: 379 HLYHLSQTVR 388 HLSQ +R Sbjct: 179 ---HLSQNIR 185 >gi|308069435|ref|YP_003871040.1| hypothetical protein PPE_02674 [Paenibacillus polymyxa E681] gi|305858714|gb|ADM70502.1| Conserved hypothetical protein [Paenibacillus polymyxa E681] Length = 417 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 36/91 (39%), Positives = 54/91 (59%), Gaps = 6/91 (6%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTA 275 N IV+LG NAGKSS+ N L + VA+V+ + GTT D + ++L G +V + DTA Sbjct: 10 NRPHIVLLGRRNAGKSSILNTLTGQPVAVVSPVGGTTTDPVFKPMELLPAGPIVLV-DTA 68 Query: 276 GIRETDDIVEKEGIKRTFLEVENA-DLILLL 305 G+ + +I E + LE+ N+ DL LL+ Sbjct: 69 GLDDEGEIGELR--RNKTLEILNSTDLALLV 97 >gi|300957644|ref|ZP_07169838.1| hypothetical protein HMPREF9547_03387 [Escherichia coli MS 175-1] gi|300315635|gb|EFJ65419.1| hypothetical protein HMPREF9547_03387 [Escherichia coli MS 175-1] Length = 136 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 37/61 (60%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G S AGKSSL NAL + +V V+D+ TR+V L G+ + I+D G+ E+ Sbjct: 50 IGIMGKSGAGKSSLCNALFQGEVTPVSDVYAGTREVQRFRLSGHGHSMVITDLPGVGESR 109 Query: 282 D 282 D Sbjct: 110 D 110 >gi|284006627|emb|CBA71888.1| GTP-binding protein [Arsenophonus nasoniae] Length = 432 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 52/198 (26%), Positives = 87/198 (43%), Gaps = 30/198 (15%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAG-IRE 279 I ++G++NAGKSSLFN + K +V + T L ID+D G +V ++DT G IR Sbjct: 202 ISLVGYTNAGKSSLFNQMTKSEVYAADQLFATLDPTLRRIDIDDVGAIV-LADTVGFIRH 260 Query: 280 -TDDIVEKEGIKRTFLEVENADLIL-LLKEINSKKEISF-----------PKNIDFIFIG 326 D+V K T E A L+L ++ ++++ E + I + + Sbjct: 261 LPHDLV--AAFKATLQETREASLLLHVVDAVDNRMEENIQAVESVLEEIEANEIPALLVM 318 Query: 327 TKSDLYSTYTEEYDH---------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377 K D+ + + D +S+ TGEG+ L+ + LS + +P Sbjct: 319 NKIDMLNGFIPRIDRDENNVPIRVWLSAQTGEGIPLLLQALTERLSGEIAHYELRLPPEA 378 Query: 378 ---RHLYHLSQTVRYLEM 392 R ++ Q + Y EM Sbjct: 379 GRLRSRFYQLQAIEYEEM 396 >gi|159484917|ref|XP_001700498.1| ERA-like protein, small ras-type GTPase [Chlamydomonas reinhardtii] gi|158272250|gb|EDO98053.1| ERA-like protein, small ras-type GTPase [Chlamydomonas reinhardtii] Length = 439 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 32/79 (40%), Positives = 45/79 (56%), Gaps = 10/79 (12%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R+GY + ++G NAGKS+L NAL + ++IVT P TTR + L Y + + DT G Sbjct: 157 RSGY-VAVIGKPNAGKSTLINALVGQKLSIVTYKPQTTRHRVMGILSERDYQMILFDTPG 215 Query: 277 IRETDDIVEKEGIKRTFLE 295 ++EK KRT LE Sbjct: 216 ------VIEK---KRTKLE 225 >gi|315604800|ref|ZP_07879859.1| GTP-binding protein Era [Actinomyces sp. oral taxon 180 str. F0310] gi|315313471|gb|EFU61529.1| GTP-binding protein Era [Actinomyces sp. oral taxon 180 str. F0310] Length = 402 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 2/100 (2%) Query: 177 DFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLF 236 D +EED + + E L + L+ D ++ I E R G+ + I+G N GKS+L Sbjct: 67 DLEDEEDA-DLDAFEALTSLASLREDAAATIEVPDFPEDFRAGF-VSIVGRPNVGKSTLT 124 Query: 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 NAL +AI + P TTR + + + Y + + DT G Sbjct: 125 NALVGAKIAITSGRPETTRHNIRGIVHGDNYQLVLVDTPG 164 >gi|158316815|ref|YP_001509323.1| small GTP-binding protein [Frankia sp. EAN1pec] gi|158112220|gb|ABW14417.1| small GTP-binding protein [Frankia sp. EAN1pec] Length = 462 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 3/78 (3%) Query: 202 DISSHISQGKLGEII--RNGYKIV-ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 D+++ + G +G + G ++ ++G N GKS+L N + + A+V D+PG TRD + Sbjct: 5 DLAASVDDGPVGGALPLAGGQPVLAVVGRPNVGKSTLVNRILGRRAAVVEDVPGVTRDRV 64 Query: 259 TIDLDLEGYLVKISDTAG 276 D G + DT G Sbjct: 65 AYDAVWNGRRFTLVDTGG 82 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 7/90 (7%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ ++G N GKSSL N LA + ++V D+ GTTRD + + + G DTAG+R Sbjct: 201 RVALIGRPNVGKSSLLNKLAGSERSLVHDVAGTTRDPVDELVTVGGETWMFIDTAGLRRR 260 Query: 281 DDIVEKEGIK-----RTFLEVENADLILLL 305 + E G + RT +E A++ ++L Sbjct: 261 --VKEASGAEYYSSLRTASALEAAEVAIVL 288 >gi|295109168|emb|CBL23121.1| iron-only hydrogenase maturation protein HydF [Ruminococcus obeum A2-162] Length = 408 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 18/167 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280 I G NAGKSS+ NA+ +D+AIV+ + GTT D + ++L V I DT GI + Sbjct: 14 ISFFGKRNAGKSSVINAVTGQDLAIVSSVRGTTTDPVYKTMELLPLGPVMIIDTPGIDDE 73 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKK---EISF-----PKNIDFIFIGTKSDLY 332 ++ +++++ + D+ +L+ + + K E++ K I ++ + K DL Sbjct: 74 GELGALR-VRKSYQVLNKTDIAILVVDSTTGKGEEELALIHRFHKKGIPYLVVYNKIDLL 132 Query: 333 S--------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371 S + L+S+ G ++EL KI ++ K P Sbjct: 133 SGEGIKDLAMSVRPGEVLVSAADGMNIQELKEKIATLKPEDTHKYPL 179 >gi|154173760|ref|YP_001408329.1| GTP-binding protein Era [Campylobacter curvus 525.92] gi|189037253|sp|A7GYN7|ERA_CAMC5 RecName: Full=GTPase Era gi|112803151|gb|EAU00495.1| GTP-binding protein Era [Campylobacter curvus 525.92] Length = 289 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 52/94 (55%), Gaps = 1/94 (1%) Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 +R+G+ + I+G +NAGKSSL NAL + +AIV+ TR + + EG + DT Sbjct: 1 MRSGF-VSIIGRTNAGKSSLLNALLNEKIAIVSHKQNATRRKINGIVMNEGDQIIFVDTP 59 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309 G+ E++ I+ K I + + D ++ + ++ Sbjct: 60 GLHESEKILNKLMINEAVKSMGDCDAMIFIASVH 93 >gi|254442831|ref|ZP_05056307.1| GTP-binding proten HflX [Verrucomicrobiae bacterium DG1235] gi|198257139|gb|EDY81447.1| GTP-binding proten HflX [Verrucomicrobiae bacterium DG1235] Length = 435 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 60/208 (28%), Positives = 91/208 (43%), Gaps = 39/208 (18%) Query: 207 ISQGKLGEIIRNGY------------KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254 I++ +L E+I++ + + I+G++NAGKSSL N + DV + D T Sbjct: 180 ITKKELKEVIQHRHVQRAKRLRKPVPTVAIVGYTNAGKSSLLNTMTDSDV-LAADKLFAT 238 Query: 255 RDVLTIDLDLEG-YLVKISDTAGI--RETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311 D T L+L+ V ++DT G R +V E K T E ADL++ + ++ + Sbjct: 239 LDPTTRRLELDNSQHVLVTDTVGFVRRLPHRLV--EAFKATLEEAVVADLLIHVVDVTNP 296 Query: 312 -------------KEISFPKNIDFIFIGTKSDLYSTYTEE---YDH----LISSFTGEGL 351 KEI KN + L E + H IS+ TGEG+ Sbjct: 297 DAEKHFQTTMEVLKEIEADKNPMLVVFNKIDALEDPSDRERFMFTHKDALYISANTGEGI 356 Query: 352 EELINKIKSILSNKFKKLPFSIPSHKRH 379 EL I L+ KFK IP H+R+ Sbjct: 357 AELKETIAHHLNAKFKSKELLIP-HERY 383 >gi|190571107|ref|YP_001975465.1| GTP-binding protein Era [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213019630|ref|ZP_03335436.1| GTP-binding protein Era [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357379|emb|CAQ54813.1| GTP-binding protein Era [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995052|gb|EEB55694.1| GTP-binding protein Era [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 294 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 32/102 (31%), Positives = 55/102 (53%), Gaps = 5/102 (4%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I G NAGKS+L N++ K +AIVT TTR + + +D+ G+ + Sbjct: 9 VTIAGLPNAGKSTLINSIVGKKIAIVTPKVQTTRTQVRGVAICNNAQIVFTDSPGVFSAE 68 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI 323 +EK +K + V+++D+ LLL ++N ++ KNI+ I Sbjct: 69 TNLEKALVKSAWGAVKDSDITLLLVDVN-----NYLKNIERI 105 >gi|293400788|ref|ZP_06644933.1| ribosome biogenesis GTPase YqeH [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305814|gb|EFE47058.1| ribosome biogenesis GTPase YqeH [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 360 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 4/71 (5%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273 E RN +V++G +NAGKS++ NAL +K + PGTT D I++D GY + D Sbjct: 157 EHYRNERDVVVMGMANAGKSTMLNALCEKGDLTTSRHPGTTLDFNEINMD--GY--TLYD 212 Query: 274 TAGIRETDDIV 284 T G+ D ++ Sbjct: 213 TPGLTRMDSLL 223 >gi|261749630|ref|YP_003257316.1| putative cell growth GTP-binding protein [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497723|gb|ACX84173.1| putative GTP-binding protein (cell growth-related) [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 305 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 1/86 (1%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDD 282 I+G N GKS+L N+L +D++I+T P TTR + +D + SDT G +T Sbjct: 15 IIGFPNVGKSTLMNSLVGEDLSIITHKPQTTRHRILGIVDKYNAQIIFSDTPGFMIKTAF 74 Query: 283 IVEKEGIKRTFLEVENADLILLLKEI 308 +++ +K +E+AD++L EI Sbjct: 75 FMQRIMMKYIERSLEDADIVLFTTEI 100 >gi|257470080|ref|ZP_05634172.1| GTP-binding protein Era [Fusobacterium ulcerans ATCC 49185] gi|317064304|ref|ZP_07928789.1| GTP binding protein [Fusobacterium ulcerans ATCC 49185] gi|313689980|gb|EFS26815.1| GTP binding protein [Fusobacterium ulcerans ATCC 49185] Length = 297 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 2/94 (2%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+L N L + VAIV+D GTTRD + L+L DT GI + Sbjct: 6 IAVVGRPNVGKSTLINKLVSEKVAIVSDKAGTTRDNIKGILNLNNNQYIFIDTPGIHKAK 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 ++ + +++ D+IL L ++ +EIS Sbjct: 66 HLLGEYMTNSAIRVLKDVDVILFL--LDGSQEIS 97 >gi|283798881|ref|ZP_06348034.1| GTP-binding protein [Clostridium sp. M62/1] gi|291073338|gb|EFE10702.1| GTP-binding protein [Clostridium sp. M62/1] Length = 432 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 81/166 (48%), Gaps = 17/166 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTAGIRE 279 I G NAGKSSL NA +D+A+V+D+ GTT D + ++L G V I DT GI + Sbjct: 14 ISFFGCRNAGKSSLLNAFTGQDLAVVSDVKGTTTDPVKKSMELLPLGPAV-IIDTPGIDD 72 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISF---PKNIDFIFIGTKSDL 331 + + +++T + D+ +L+ + + +E++F K + ++ K DL Sbjct: 73 EGSLGGRR-VRKTRQILNMTDIAVLVADSQTGIRKEDRELAFLFQEKEVPYVVAFNKCDL 131 Query: 332 YSTYTEEYDHLISSFTG--EGLEE---LINKIKSILSNKFKKLPFS 372 + + ++ TG EG+ E N+ ++LS LP S Sbjct: 132 TENHIPDIYKEETNKTGAKEGVPEDRGTENREAAVLSGAAAVLPVS 177 >gi|158423629|ref|YP_001524921.1| transcriptional regulator [Azorhizobium caulinodans ORS 571] gi|158330518|dbj|BAF88003.1| transcriptional regulator [Azorhizobium caulinodans ORS 571] Length = 311 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 49/192 (25%), Positives = 85/192 (44%), Gaps = 28/192 (14%) Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG- 266 ++ + E R G+ + +LG NAGKS+L N L V+IV+ TTR ++ + LEG Sbjct: 7 AEAEGAEPTRCGF-VALLGAPNAGKSTLTNQLVGTKVSIVSHKVQTTRAIVR-GIALEGP 64 Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK------------KEI 314 V + DT GI +E+ + + +AD++ LL + N E+ Sbjct: 65 SQVILVDTPGIFSPKRRLERAMVNTAWTSASDADVVALLVDANRGIDENVESILKPLAEV 124 Query: 315 SFPK-----NIDFIFIGTKSDLYSTYTE----EYDHLISSFTGEGLEELINKIKSILSNK 365 P+ ID I T +L TE E ++S+ G+G ++ +++ + K Sbjct: 125 KRPRALILNKIDMIRRDTLLELAQKLTERLSFERVFMVSALKGDG----VDDVRTWFAEK 180 Query: 366 FKKLPFSIPSHK 377 P+ P + Sbjct: 181 VPFGPWLYPEDQ 192 >gi|227833144|ref|YP_002834851.1| cytidylate kinase [Corynebacterium aurimucosum ATCC 700975] gi|227454160|gb|ACP32913.1| cytidylate kinase [Corynebacterium aurimucosum ATCC 700975] Length = 528 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 69/130 (53%), Gaps = 15/130 (11%) Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250 +VL++IL L + H S I ++ ++G N GKSSL N L ++ ++V + Sbjct: 244 DVLDEILRLFPEEPRHSS------ITSGPRRVALVGKPNVGKSSLLNKLTAEERSVVDNA 297 Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIK-----RTFLEVENADLILLL 305 GTT D + + L+ L K DTAG+R+ + +G + RT ++ A++ ++L Sbjct: 298 AGTTVDPVDSLVQLDQRLWKFIDTAGLRKK--VKNAQGHEYYASLRTRGVIDAAEVCIML 355 Query: 306 KEINSKKEIS 315 I++ +E+S Sbjct: 356 --IDASQEVS 363 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 29/55 (52%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 + ++G N GKSSL N + A+V D PG TRD ++ D G + DT G Sbjct: 96 VAVVGRPNVGKSSLVNRFLGRREAVVEDHPGVTRDRVSYVADWNGQRFFVQDTGG 150 >gi|91229122|ref|ZP_01262895.1| tRNA modification GTPase [Vibrio alginolyticus 12G01] gi|91187434|gb|EAS73777.1| tRNA modification GTPase [Vibrio alginolyticus 12G01] Length = 153 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 2/99 (2%) Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-EKDCG 401 +S+ TG G+E L + +K + + +RHL L + ++L++ E Sbjct: 56 LSAKTGAGVEALRDHLKECMGFSGNS-EGGFMARRRHLDALERAAQHLQIGQEQLEGYMA 114 Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +I+AE LR+ L +ITG + LL IFS FCIGK Sbjct: 115 GEILAEELRITQQHLNEITGEFSSDDLLGRIFSSFCIGK 153 >gi|329114580|ref|ZP_08243339.1| GTP-binding protein HflX [Acetobacter pomorum DM001] gi|326696060|gb|EGE47742.1| GTP-binding protein HflX [Acetobacter pomorum DM001] Length = 439 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 47/179 (26%), Positives = 81/179 (45%), Gaps = 29/179 (16%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAGIRET 280 + ++G++NAGKS+LFNAL V + T + IDL G V +SDT G Sbjct: 212 VALVGYTNAGKSTLFNALTGATVYAQDQLFATLDPTMRAIDLP-SGRRVILSDTVGF--I 268 Query: 281 DDIVEK--EGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSD--LYSTYT 336 D+ + + T EV AD+IL ++++ + K++ + G D L + Sbjct: 269 SDLPTELIAAFRATLEEVAEADIILHVRDVAHPDSAAQKKDVLGVLEGMAKDDMLEQDWP 328 Query: 337 E-------EYDHL--------------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374 E + D L IS+ TG+GLE L+ +I + ++ + + + +P Sbjct: 329 ERIIEVLNKVDLLGGPEAIPQTEDTIAISAITGDGLETLLARIDARITQGMETVRYRLP 387 >gi|326797796|ref|YP_004315615.1| GTP-binding protein Era-like-protein [Sphingobacterium sp. 21] gi|326548560|gb|ADZ76945.1| GTP-binding protein Era-like-protein [Sphingobacterium sp. 21] Length = 292 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 51/90 (56%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G NAGKS+L N+L + ++IVT TTR + ++ E Y + SDT G+ + Sbjct: 8 VSIVGKPNAGKSTLMNSLVGEKMSIVTPKAQTTRHRILGIVNEEDYQIVFSDTPGVIKPA 67 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK 311 +++ + + +AD+IL + +IN K Sbjct: 68 YSLQESMMNFVHGSLVDADIILFVTDINEK 97 >gi|307109146|gb|EFN57384.1| hypothetical protein CHLNCDRAFT_142788 [Chlorella variabilis] Length = 959 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 31/76 (40%), Positives = 42/76 (55%), Gaps = 3/76 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280 I I G NAGKSSL N + + + +IV PGTT D + ++L K+ DTAGI E Sbjct: 517 IGIFGCMNAGKSSLMNRVTRSETSIVDSTPGTTADTKVVLMELHDVGPAKLFDTAGIDEE 576 Query: 281 DDIVEKEGIKRTFLEV 296 + EK+ +R L V Sbjct: 577 GALGEKK--RRKVLSV 590 >gi|258654174|ref|YP_003203330.1| small GTP-binding protein [Nakamurella multipartita DSM 44233] gi|258557399|gb|ACV80341.1| small GTP-binding protein [Nakamurella multipartita DSM 44233] Length = 483 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/84 (28%), Positives = 43/84 (51%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+L N L + A+V D+PG TRD ++ D G + DT G Sbjct: 49 LAVVGRPNVGKSTLVNRLIGRREAVVQDVPGVTRDRVSHDALWRGRRFTVVDTGGWDPMA 108 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ E + ++ +D +L++ Sbjct: 109 SGLQAEVTAQAERAMQTSDAVLVV 132 Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust. Identities = 30/100 (30%), Positives = 57/100 (57%), Gaps = 9/100 (9%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ ++G N GKSSL N L + ++V + GTT D + ++++G L + DTAG+R Sbjct: 222 RVALIGRPNVGKSSLLNKLTGESRSVVHAVAGTTVDPVDSLVEIDGQLWRFVDTAGLRRR 281 Query: 281 DDIVEKEGIK-----RTFLEVENADLILLLKEINSKKEIS 315 + + +G++ RT +E+A++ + L I+S I+ Sbjct: 282 --VNQAKGMEYYASLRTQTALESAEVAIAL--IDSSTPIT 317 >gi|262182365|ref|ZP_06041786.1| GTP-binding protein EngA [Corynebacterium aurimucosum ATCC 700975] Length = 537 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 6/88 (6%) Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250 +VL++IL L + H S I ++ ++G N GKSSL N L ++ ++V + Sbjct: 253 DVLDEILRLFPEEPRHSS------ITSGPRRVALVGKPNVGKSSLLNKLTAEERSVVDNA 306 Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAGIR 278 GTT D + + L+ L K DTAG+R Sbjct: 307 AGTTVDPVDSLVQLDQRLWKFIDTAGLR 334 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 29/55 (52%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 + ++G N GKSSL N + A+V D PG TRD ++ D G + DT G Sbjct: 105 VAVVGRPNVGKSSLVNRFLGRREAVVEDHPGVTRDRVSYVADWNGQRFFVQDTGG 159 >gi|262202714|ref|YP_003273922.1| ribosome-associated GTPase EngA [Gordonia bronchialis DSM 43247] gi|262086061|gb|ACY22029.1| ribosome-associated GTPase EngA [Gordonia bronchialis DSM 43247] Length = 478 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 42/84 (50%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+L N + + A+V DIPG TRD ++ G + DT G Sbjct: 44 LAIVGRPNVGKSTLVNRILGRREAVVEDIPGVTRDRVSYAASWSGRRFTVVDTGGWEPDA 103 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 +++ + L + AD I+L+ Sbjct: 104 KGLQQAVAAQAELAMRTADAIVLV 127 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 6/75 (8%) Query: 211 KLGEIIRNG------YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL 264 KL E R G ++ ++G N GKSSL N LA + ++V ++ GTT D + ++L Sbjct: 200 KLPETPREGPALGGPRRVALVGKPNVGKSSLLNKLAGAERSVVDNVAGTTVDPVDELIEL 259 Query: 265 EGYLVKISDTAGIRE 279 +G + DTAG+R Sbjct: 260 DGKTWQFVDTAGLRR 274 >gi|168183662|ref|ZP_02618326.1| GTP-binding protein [Clostridium botulinum Bf] gi|237797042|ref|YP_002864594.1| GTP-binding protein [Clostridium botulinum Ba4 str. 657] gi|182673255|gb|EDT85216.1| GTP-binding protein [Clostridium botulinum Bf] gi|229263544|gb|ACQ54577.1| GTP-binding protein [Clostridium botulinum Ba4 str. 657] Length = 399 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 41/121 (33%), Positives = 67/121 (55%), Gaps = 8/121 (6%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276 N I +G +N+GKSSL NA+ +D++IV+ I GTT D ++ ++L V +DTAG Sbjct: 8 NRIHITFIGKTNSGKSSLMNAIIGQDISIVSPIEGTTTDPVSKSMELIPLGPVLFTDTAG 67 Query: 277 IRETDDI--VEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK--NIDFIFIGTKS 329 + + ++ V E T L+ + A ++ K+I+ KK I+ K NI +I + K Sbjct: 68 LEDNTELGKVRIEKTLNTLLKTDFAIYVMSAKDIDINLYKKTINKFKQQNISYITVINKI 127 Query: 330 D 330 D Sbjct: 128 D 128 >gi|164686728|ref|ZP_02210756.1| hypothetical protein CLOBAR_00323 [Clostridium bartlettii DSM 16795] gi|164604118|gb|EDQ97583.1| hypothetical protein CLOBAR_00323 [Clostridium bartlettii DSM 16795] Length = 637 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 10/85 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL---VKISDTAGIR 278 I + G+ N GK+++FN L + V + PG T + EGYL +KI D GI Sbjct: 4 IALFGNPNVGKTTVFNLLTGSN-QYVGNWPGVTIE------KKEGYLNEDIKIVDLPGIY 56 Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303 D +E + ++FLE E+ D+IL Sbjct: 57 AMDTFSNEEKVSKSFLENEDVDVIL 81 >gi|115524769|ref|YP_781680.1| GTP-binding protein, HSR1-related [Rhodopseudomonas palustris BisA53] gi|115518716|gb|ABJ06700.1| GTP-binding protein, HSR1-related protein [Rhodopseudomonas palustris BisA53] Length = 455 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 49/186 (26%), Positives = 78/186 (41%), Gaps = 29/186 (15%) Query: 217 RNGYKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 R Y++V L G++NAGKS+LFN L + +V + T L + G +SDT Sbjct: 218 RVPYRVVALVGYTNAGKSTLFNRLTRAEVQAADMLFATLDPTLRALVLPHGGKAMLSDTV 277 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE---------------ISFPKNI 320 G + T EV ADLIL +++I+ + I+ Sbjct: 278 GFISNLPTQLVAAFRATLEEVLEADLILHVRDISHEDADAQQDDVDAVLRQLGIAPGTGS 337 Query: 321 DFIFIGTKSDLYSTYTEE--------YD-----HLISSFTGEGLEELINKIKSILSNKFK 367 I + K D +S +E D HL+S+ TG+GL+ L+ I+ L+ Sbjct: 338 PIIEVWNKIDRFSPEQQEELQNIAARRDSEHPCHLVSAVTGQGLDALLQAIEDRLAETRT 397 Query: 368 KLPFSI 373 L ++ Sbjct: 398 TLDLTV 403 >gi|212709954|ref|ZP_03318082.1| hypothetical protein PROVALCAL_01005 [Providencia alcalifaciens DSM 30120] gi|212687363|gb|EEB46891.1| hypothetical protein PROVALCAL_01005 [Providencia alcalifaciens DSM 30120] Length = 426 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 49/183 (26%), Positives = 80/183 (43%), Gaps = 27/183 (14%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAG-IRE 279 + ++G++NAGKSSLFN + DV + T L ID+D G +V ++DT G IR Sbjct: 200 VSLVGYTNAGKSSLFNRMTSADVYAADQLFATLDPTLRRIDVDDVGTVV-LADTVGFIRH 258 Query: 280 -TDDIVEKEGIKRTFLEVENADLILL------------LKEINSKKEISFPKNIDFIFIG 326 D+V K T E A+L+L ++ +NS E I + + Sbjct: 259 LPHDLV--AAFKATLQETREANLLLHVIDAVDVRLDENIQAVNSVLEEIDANEIPTLLVM 316 Query: 327 TKSDLYSTYTEEYDH---------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377 K D+ + D +S+ TGEG+ L+ + LS + + +P ++ Sbjct: 317 NKVDMLDDFVPRIDRDEDNKPVRVWVSAQTGEGIPLLLQALTERLSGEIAHVELRLPPNE 376 Query: 378 RHL 380 L Sbjct: 377 GRL 379 >gi|331002901|ref|ZP_08326414.1| GTP-binding protein Era [Lachnospiraceae oral taxon 107 str. F0167] gi|330413194|gb|EGG92568.1| GTP-binding protein Era [Lachnospiraceae oral taxon 107 str. F0167] Length = 298 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 29/96 (30%), Positives = 57/96 (59%), Gaps = 3/96 (3%) Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDT 274 +++G+ + ++G N GKS+L N L + +AI ++ P TTR+ + T+ D G +V + DT Sbjct: 1 MKSGF-VALIGRPNVGKSTLMNTLIGQKIAITSNKPQTTRNRIQTVFTDERGQIVFL-DT 58 Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310 GI + + + + +K + + + D++L L E N+ Sbjct: 59 PGIHKAKNKLGEYMVKVSTRTLRDVDMVLWLIEPNT 94 >gi|218132942|ref|ZP_03461746.1| hypothetical protein BACPEC_00803 [Bacteroides pectinophilus ATCC 43243] gi|217991815|gb|EEC57819.1| hypothetical protein BACPEC_00803 [Bacteroides pectinophilus ATCC 43243] Length = 322 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 35/108 (32%), Positives = 61/108 (56%), Gaps = 4/108 (3%) Query: 204 SSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDL 262 S IS G+ G+I ++G+ I+G N GKS+L N + + +AI ++ P TTR+ + T+ Sbjct: 13 QSGISDGRSGDI-KSGFA-AIIGRPNVGKSTLMNRIIGQKIAITSNKPQTTRNRIQTVYT 70 Query: 263 DLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310 D G +V + DT GI + + + + + ++ DL+L L E +S Sbjct: 71 DDRGQIVFL-DTPGIHKAKNKLGEYMVGAAEKTIDEVDLVLWLVEPSS 117 >gi|220912306|ref|YP_002487615.1| GTP-binding protein EngA [Arthrobacter chlorophenolicus A6] gi|219859184|gb|ACL39526.1| small GTP-binding protein [Arthrobacter chlorophenolicus A6] Length = 516 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 3/92 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I ++G N GKSSL N LA + +V + GTTRD + ++L + DTAGIR Sbjct: 255 RIALIGRPNVGKSSLLNKLAGTERVVVDNTAGTTRDPVDEFIELGDRTWRFVDTAGIRRR 314 Query: 281 DDIVEKEGIK---RTFLEVENADLILLLKEIN 309 + + RT +E A++ ++L ++ Sbjct: 315 QHMAQGADYYASLRTQAALEKAEVAVVLLAVD 346 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 39/160 (24%), Positives = 66/160 (41%), Gaps = 21/160 (13%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+L N + + A+V D PG TRD + G + DT G Sbjct: 81 LAIIGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVMYSASWNGRNFTLVDTGGWEHDA 140 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI----------------NSKKEISFPKNI--DFI 323 + ++ + VE AD +L + + SKK + N DF Sbjct: 141 RGIHARVAEQAEMAVELADAVLFVVDSAVGATATDEGVMKMLRRSKKPVIMVANKVDDFA 200 Query: 324 FIGTKSDLYS-TYTEEYDHLISSFTGEGLEELINKIKSIL 362 + L+ + E Y +S+ G G+ +L++ + +L Sbjct: 201 QEADSAALWGLGFGEPYP--VSALHGRGVADLLDHVMDVL 238 >gi|172037536|ref|YP_001804037.1| GTP-binding protein Era [Cyanothece sp. ATCC 51142] gi|254783295|sp|B1WT49|ERA_CYAA5 RecName: Full=GTPase Era gi|171698990|gb|ACB51971.1| GTP-binding protein [Cyanothece sp. ATCC 51142] Length = 314 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 41/157 (26%), Positives = 70/157 (44%), Gaps = 22/157 (14%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 I+G N GKS+L N L + +AI + + TTR+ L L + + DT GI + Sbjct: 27 IIGRPNVGKSTLMNQLIGQKIAITSPVSQTTRNRLQGILTTDKAQIIFVDTPGIHKPHHT 86 Query: 284 VEKEGIKRTFLEVENADLILLLKEINSK------------KEISFPKNIDFIFIGTKSDL 331 + K +K + + D+ILL+ + + K K ++ P + +++ Sbjct: 87 LGKIIVKNAKTAINSVDIILLVVDSSVKSGGGDRYIIDLLKTVNQPVILGLNKSDQQTEK 146 Query: 332 YSTYTEEYDHLI----------SSFTGEGLEELINKI 358 Y E Y +LI S+ TG+G+E L N + Sbjct: 147 YQEIDESYANLIQDHNWPMIKFSALTGDGVETLQNTL 183 >gi|153005111|ref|YP_001379436.1| small GTP-binding protein [Anaeromyxobacter sp. Fw109-5] gi|152028684|gb|ABS26452.1| small GTP-binding protein [Anaeromyxobacter sp. Fw109-5] Length = 689 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 1/85 (1%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273 +++ I+++G+ N GKS+LF AL K V V++ PGTT +V +EG + D Sbjct: 20 QVVAASRAIILVGNPNVGKSALFGALTGKYVT-VSNYPGTTVEVTRGSATIEGRPWHVMD 78 Query: 274 TAGIRETDDIVEKEGIKRTFLEVEN 298 T G + E E + R L E Sbjct: 79 TPGTNNLIPMSEDEQVTRDILLTER 103 >gi|77919007|ref|YP_356822.1| GTP-binding protein EngA [Pelobacter carbinolicus DSM 2380] gi|123574290|sp|Q3A4Q5|DER_PELCD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|77545090|gb|ABA88652.1| putative Era-like GTP-binding protein [Pelobacter carbinolicus DSM 2380] Length = 439 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 1/85 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280 + I+G N GKS+LFN + AIV D PG TRD + G + DT G + Sbjct: 4 VAIVGRPNVGKSTLFNRILGTRRAIVEDYPGVTRDRNYAQVTRYGTPFVLIDTGGFEPAS 63 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 + + K+ +++ L VE AD+IL + Sbjct: 64 QNRLLKQMREQSELAVEEADVILFV 88 Score = 39.7 bits (91), Expect = 0.87, Method: Compositional matrix adjust. Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ ++G N GKSSL N + + + GTTRD + + DTAGIR Sbjct: 177 RLAVIGRPNVGKSSLINRMIGVERLVANPTAGTTRDSIDTPFVYNKKSYVLIDTAGIRRK 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + +EK + ++ +E A ++L++ Sbjct: 237 GRVQQKLEKYSVIQSLKAMERAHVVLVV 264 >gi|269795286|ref|YP_003314741.1| hypothetical protein Sked_19830 [Sanguibacter keddieii DSM 10542] gi|269097471|gb|ACZ21907.1| small GTP-binding protein domain/GTP-binding conserved hypothetical protein [Sanguibacter keddieii DSM 10542] Length = 531 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 8/105 (7%) Query: 213 GEIIRNG-YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 G + NG ++ ++G N GKSSL N +A + +V GTTRD + + L+G Sbjct: 263 GVAVPNGPRRVALVGRPNVGKSSLLNKVAGSNRVVVDPTAGTTRDPVDELIQLKGKDWVF 322 Query: 272 SDTAGIRETDDIVEKEGIK-----RTFLEVENADLILLLKEINSK 311 DTAGIR + + +G RT +E A++ ++L + + K Sbjct: 323 VDTAGIRRR--VHQTQGADFYASLRTQAAIEKAEVAVVLLDASEK 365 Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 30/55 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 + ++G N GKS+L N + + A+V D PG TRD ++ + G + DT G Sbjct: 99 LAVVGRPNVGKSTLVNRIIGRREAVVEDKPGVTRDRVSYPAEWGGRRFMLVDTGG 153 >gi|168187418|ref|ZP_02622053.1| GTP-binding protein [Clostridium botulinum C str. Eklund] gi|169294718|gb|EDS76851.1| GTP-binding protein [Clostridium botulinum C str. Eklund] Length = 598 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 74/226 (32%), Positives = 106/226 (46%), Gaps = 45/226 (19%) Query: 218 NGYKIVILGHSNAGKSSLFNALA---------KKDVAIVTDIPGTTRDVLTIDLDL-EGY 267 N KI ++G++NAGKS+L N L K+ D+ T DV T L L + Sbjct: 362 NVPKISLVGYTNAGKSTLRNKLCDIASPRDVVDKETVFEADMLFATLDVTTRALVLPDNR 421 Query: 268 LVKISDTAG-IRE-TDDIVEKEGIKRTFLEVENADLILLLKEINSK---KEISFP----- 317 LV ++DT G IR+ D+V E K T EV N+DL+L + + +SK K+I Sbjct: 422 LVTLTDTVGFIRKLPHDLV--EAFKSTLEEVVNSDLLLHVVDSSSKDAYKQIEAVNLVLE 479 Query: 318 --KNID--FIFIGTKSDLYST-----YTEEYDHL----ISSFTGEGLEELINKIKSILSN 364 ++ID I I K D E++++L IS+ L+ L+N++ L N Sbjct: 480 ELESIDKPMILILNKIDKADKEQLEGLEEKFNNLKVLEISARDNLNLDTLLNEVCRALPN 539 Query: 365 KFKKLPFSIPSHKRHLYHLSQTVRYLEMAS--LNE--KDCGLDIIA 406 KK+ F IP Y S TV L + L E KD G I+A Sbjct: 540 PLKKVEFLIP------YSDSATVAMLHRSGKVLEEEYKDNGTRIVA 579 >gi|222632589|gb|EEE64721.1| hypothetical protein OsJ_19577 [Oryza sativa Japonica Group] Length = 423 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 63/252 (25%), Positives = 109/252 (43%), Gaps = 40/252 (15%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTA 275 R+GY + +LG N GKS+L N + + ++IVTD P TTR +L I + E Y + + DT Sbjct: 124 RSGY-VAVLGKPNVGKSTLINQIVGQKLSIVTDKPQTTRHRILGICSEPE-YQIILYDTP 181 Query: 276 G-IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF---------- 324 G I++ ++ +K V +AD +L++ +++ K P+ ID I Sbjct: 182 GVIKKEMHKLDTMMMKNVRSAVGSADCVLVV--VDACK---MPEKIDEILEEGVGNKDTE 236 Query: 325 -----------------IGTKSDLYSTYTEEYDHL-ISSFTGEGLEELINKIKSILSNKF 366 I K + Y +T D + IS+ G G++++ I S L Sbjct: 237 LPVLLVLNKKDLIKPGEIAKKLEWYQKFTNADDVIPISAKFGHGVDDIKEWILSKLPLGP 296 Query: 367 KKLPFSIPSHKRHLYHLSQTVR---YLEMASLNEKDCGLDIIAENLRLASVSLGKITGCV 423 P I S + + + VR +L+ C +++I+ R + ++ V Sbjct: 297 AYYPKDIASEHPERFFVGEIVREKIFLQYRQEIPYACQVNVISYKSRPTAKDFIQVEILV 356 Query: 424 DVEQLLDIIFSK 435 + E II K Sbjct: 357 EKESQRSIILGK 368 >gi|125553352|gb|EAY99061.1| hypothetical protein OsI_21018 [Oryza sativa Indica Group] Length = 423 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 63/252 (25%), Positives = 109/252 (43%), Gaps = 40/252 (15%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTA 275 R+GY + +LG N GKS+L N + + ++IVTD P TTR +L I + E Y + + DT Sbjct: 124 RSGY-VAVLGKPNVGKSTLINQIVGQKLSIVTDKPQTTRHRILGICSEPE-YQIILYDTP 181 Query: 276 G-IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF---------- 324 G I++ ++ +K V +AD +L++ +++ K P+ ID I Sbjct: 182 GVIKKEMHKLDTMMMKNVRSAVGSADCVLVV--VDACK---MPEKIDEILEEGVGNKDTE 236 Query: 325 -----------------IGTKSDLYSTYTEEYDHL-ISSFTGEGLEELINKIKSILSNKF 366 I K + Y +T D + IS+ G G++++ I S L Sbjct: 237 LPVLLVLNKKDLIKPGEIAKKLEWYQKFTNADDVIPISAKFGHGVDDIKEWILSKLPLGP 296 Query: 367 KKLPFSIPSHKRHLYHLSQTVR---YLEMASLNEKDCGLDIIAENLRLASVSLGKITGCV 423 P I S + + + VR +L+ C +++I+ R + ++ V Sbjct: 297 AYYPKDIASEHPERFFVGEIVREKIFLQYRQEIPYACQVNVISYKSRPTAKDFIQVEILV 356 Query: 424 DVEQLLDIIFSK 435 + E II K Sbjct: 357 EKESQRSIILGK 368 >gi|331222340|ref|XP_003323844.1| hypothetical protein PGTG_05746 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309302834|gb|EFP79425.1| hypothetical protein PGTG_05746 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 152 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 1/112 (0%) Query: 120 NGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFS 179 +G D+ + L LI +E E QR ++ + + Y Q KL + EA +DFS Sbjct: 25 HGSTDINKILGLKHLIKAEAEEQRSWAVSEFNSKFDHTYQQMQKKLKQSIALCEAIIDFS 84 Query: 180 EEEDVQNFS-SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNA 230 E+ + + K+V++ +L L+ I++ +SQ K + I G K+ + G N Sbjct: 85 EDGSMDDLEIWKQVIDHLLDLQTAINTQLSQSKQRKKISMGIKVSLYGSPNC 136 >gi|315604206|ref|ZP_07879272.1| ribosome-associated GTPase EngA [Actinomyces sp. oral taxon 180 str. F0310] gi|315313912|gb|EFU61963.1| ribosome-associated GTPase EngA [Actinomyces sp. oral taxon 180 str. F0310] Length = 512 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 35/58 (60%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 ++ ++G N GKSSL NALA +V ++ GTTRD + ++L+ DTAGIR Sbjct: 253 RVALVGRPNVGKSSLLNALAGGHRVVVNELAGTTRDPVDELVELDSRQWWFVDTAGIR 310 Score = 43.5 bits (101), Expect = 0.071, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 10/89 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+L N + + A+V D PG TRD ++ + G + DT G Sbjct: 79 LAVVGRPNVGKSTLVNRILGRREAVVQDTPGVTRDRVSYPAEWAGRNFTLVDTGGWE--- 135 Query: 282 DIVEKEGIKRTFLE-----VENADLILLL 305 ++ +G+ R+ E V+ AD ++L+ Sbjct: 136 --IDVKGLDRSVAEQAEIAVDLADAVVLV 162 >gi|294463173|gb|ADE77123.1| unknown [Picea sitchensis] Length = 433 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 47/184 (25%), Positives = 82/184 (44%), Gaps = 32/184 (17%) Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 +G R+GY + ++G N GKS+L N + + ++IVTD P TTR + Y + + Sbjct: 129 VGPDHRSGY-VAVVGKPNVGKSTLLNQMIGQKLSIVTDKPQTTRHRILGLCSAPDYQMVL 187 Query: 272 SDTAGIRETD-DIVEKEGIKRTFLEVENADLILLLKEINSKKE----------ISFPKNI 320 DT G+ + + ++ +K NAD +L + ++ E + K Sbjct: 188 YDTPGVIQKEMHKLDAMMMKNVHSATGNADCVLTVVDVCKVPEKVNDLFEEDGVDLKKKP 247 Query: 321 DFIFIGTKSDLYST--------YTEEY---DHL--ISSFTGEGLEELINKIKSILSNKFK 367 + + K DL + E++ DH+ IS+ G G+E++ N I S Sbjct: 248 PTLLVLNKKDLMKPGEIAKRMEWYEKFGGADHILSISAKYGHGVEDVKNWIVS------- 300 Query: 368 KLPF 371 KLP+ Sbjct: 301 KLPY 304 >gi|256375751|ref|YP_003099411.1| GTP-binding protein EngA [Actinosynnema mirum DSM 43827] gi|255920054|gb|ACU35565.1| small GTP-binding protein [Actinosynnema mirum DSM 43827] Length = 471 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 41/84 (48%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+L N + + A+V D+PG TRD + D G + DT G Sbjct: 34 LAIVGRPNVGKSTLVNRIIGRREAVVQDVPGVTRDRVAYDALWNGRKFTVVDTGGWEPDA 93 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + L ++ AD +LL+ Sbjct: 94 TGMMASVAAQAELAMQTADAVLLV 117 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 32/120 (26%), Positives = 61/120 (50%), Gaps = 7/120 (5%) Query: 189 SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVT 248 S +VL+ IL ++ + G ++ ++G N GKSSL N L ++ ++V Sbjct: 180 SGDVLDKIL----EVLPETPRDTFGANTGGPRRVALVGRPNVGKSSLLNRLTGENRSVVD 235 Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305 + GTT D + ++L+ + + DTAG+R+ + E RT +E+A++ ++L Sbjct: 236 SVAGTTVDPVDSLVELDDEVWRFVDTAGLRKRVNFASGAEYYASLRTKAAIESAEVAVVL 295 >gi|257468039|ref|ZP_05632135.1| ferrous iron transport protein B [Fusobacterium ulcerans ATCC 49185] gi|317062325|ref|ZP_07926810.1| ferrous iron transporter B [Fusobacterium ulcerans ATCC 49185] gi|313688001|gb|EFS24836.1| ferrous iron transporter B [Fusobacterium ulcerans ATCC 49185] Length = 731 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 79/172 (45%), Gaps = 19/172 (11%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ G+ N GKS+L NA+A + V + PG T + + +G +K+ D G+ Sbjct: 3 KLAFTGNPNVGKSALINAIAGSKLK-VGNWPGVTVEKKEAIFNYKGEEIKLVDLPGVYSL 61 Query: 281 DDIVEKEGIKRTFLEVENADLIL-LLKEINSK---------KEISFPKNIDFIFIGTKSD 330 +E I R F+ E+ D+++ ++ N + KE+ P + F + Sbjct: 62 SPYTLEEKITRDFILDEDPDVVINVIDSTNLERNLYLTYLLKELEKPTIMALNFYDEFTK 121 Query: 331 L-YSTYTEEYDHLI-------SSFTGEGLEELINKIKSILSNKFKKLPFSIP 374 L Y EE+ LI S+ G G+EEL++ I + + K K +S+P Sbjct: 122 LNYKLNMEEFQQLIELKAISVSALKGTGIEELLDSIIELAAKKEKIKKYSLP 173 >gi|311742420|ref|ZP_07716229.1| ribosome-associated GTPase EngA [Aeromicrobium marinum DSM 15272] gi|311314048|gb|EFQ83956.1| ribosome-associated GTPase EngA [Aeromicrobium marinum DSM 15272] Length = 450 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 26/58 (44%), Positives = 35/58 (60%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 ++ I+G N GKSSL N LA ++ +V D GTT D + ++L G L DTAGIR Sbjct: 190 RVAIVGKPNVGKSSLLNRLAGEERVVVDDASGTTVDPVDELVELGGGLWTFIDTAGIR 247 Score = 44.3 bits (103), Expect = 0.036, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 30/55 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 + ++G N GKS+L N + + A+V D+PG TRD + + G + DT G Sbjct: 17 LAVIGRPNVGKSTLVNRIIGRREAVVEDVPGVTRDRVAYEATWNGRTFTVVDTGG 71 >gi|291523016|emb|CBK81309.1| iron-only hydrogenase maturation protein HydF [Coprococcus catus GD/7] Length = 401 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 52/172 (30%), Positives = 81/172 (47%), Gaps = 24/172 (13%) Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKI 271 GE + G+ G NAGKSSL NA+ +++A+V+D GTT D ++ ++L V I Sbjct: 9 GERVHIGF----FGRRNAGKSSLVNAVTGQELAVVSDTRGTTTDPVSKAMELLPIGPVVI 64 Query: 272 SDTAG-----------IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK-EISFPKN 319 DT G +R+T I+ K + V AD LK+ + + EI K Sbjct: 65 IDTPGFDDEGALGELRVRKTRQILNKSDVA-----VLVADCTEGLKDCDRELIEIFRQKE 119 Query: 320 IDFIFIGTKSDLYSTYTE--EYDHLISSFTGEGLEELINKIKSILSNKFKKL 369 I ++ + K DL + E E + +S+ +E L KI +I + KL Sbjct: 120 IPWLLVWNKCDLKPEHPEAKENEIYVSATEKIEIEALKEKIAAIGKTEENKL 171 >gi|219109543|ref|XP_002176526.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217411061|gb|EEC50989.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 551 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 15/102 (14%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE----------GYLVKI 271 I I+G N GKSSL N++ AIV+++ GTTRD +ID +E + + Sbjct: 253 IAIIGRPNVGKSSLLNSIFGDTRAIVSEMAGTTRD--SIDAVMERPPPPGSDDLSTIYRF 310 Query: 272 SDTAGIRETDDI---VEKEGIKRTFLEVENADLILLLKEINS 310 DTAGIR + E + R + AD++LL+ + S Sbjct: 311 VDTAGIRRKGKVDFGPEFFMVNRALRAIRRADVVLLILDATS 352 Score = 36.6 bits (83), Expect = 7.3, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 5/89 (5%) Query: 222 IVILGHSNAGKSSLFNALA--KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 I I+G N GKS+L N +A + AIV D G TRD + G I DT G+ Sbjct: 72 IAIVGRPNVGKSALVNRIAGSQSGGAIVADESGITRDRTYRPAEFLGERFMIVDTGGLVF 131 Query: 280 TDD---IVEKEGIKRTFLEVENADLILLL 305 DD + KE ++ + +E + ++++ Sbjct: 132 DDDESTLFAKEIREQAMVAIEESAAVIMV 160 >gi|28211008|ref|NP_781952.1| GTP-binding protein [Clostridium tetani E88] gi|28203447|gb|AAO35889.1| GTP-binding protein [Clostridium tetani E88] Length = 396 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 82/164 (50%), Gaps = 29/164 (17%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-------------VLTID--- 261 N I LG NAGKSS+ NA++ + V+IV+++ GTT D ++ ID Sbjct: 8 NRIHIAFLGRRNAGKSSIINAISNQQVSIVSNVAGTTTDPVYKAMELFPIGPIMLIDTAG 67 Query: 262 LDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV--ENADLILLLKEINSKKEISFPKN 319 LD EGY+ + I +T +I+ K I ++ EN + + LKE SK++I P Sbjct: 68 LDDEGYIGNLR----IEKTKEIMNKTDIAVIAIDCKNENFEYEMYLKEKLSKRKI--PTI 121 Query: 320 IDFIFIGTKSDLYSTYT---EEYDHL--ISSFTGEGLEELINKI 358 I I ++L +++D++ IS+ E +++L KI Sbjct: 122 IALNKIDKVANLDEAIVRARKQFDNIVSISALRRENIDKLKEKI 165 >gi|294495130|ref|YP_003541623.1| ferrous iron transporter B [Methanohalophilus mahii DSM 5219] gi|292666129|gb|ADE35978.1| ferrous iron transport protein B [Methanohalophilus mahii DSM 5219] Length = 677 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 2/94 (2%) Query: 211 KLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269 ++ E NG KIV++G+ N GKS LFN + IV++ PGTT ++ D + G Sbjct: 14 QISETPSNGLEKIVLVGNPNVGKSVLFNHFSN-SYTIVSNYPGTTVEISKGDGTIAGKEY 72 Query: 270 KISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303 +I DT G+ I E+E + + ++ E+A + L Sbjct: 73 EIIDTPGMYSMLPITEEERVAQKYVLDEDAHVYL 106 >gi|257452216|ref|ZP_05617515.1| GTP-binding protein [Fusobacterium sp. 3_1_5R] gi|317058759|ref|ZP_07923244.1| small GTP-binding protein [Fusobacterium sp. 3_1_5R] gi|313684435|gb|EFS21270.1| small GTP-binding protein [Fusobacterium sp. 3_1_5R] Length = 400 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 66/123 (53%), Gaps = 9/123 (7%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276 N + G NAGKSSLFN L +D ++V+ GTT D + ++L GY +++ DTAG Sbjct: 9 NRKHVAFFGKRNAGKSSLFNLLLGEDYSLVSSHLGTTTDPVYKAMELVGYGPIRLIDTAG 68 Query: 277 IRETDDIVE------KEGIKR--TFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTK 328 + + ++ E KE +++ + V +A + ++E K++ +I ++F+ K Sbjct: 69 LDDIGELGELRVKKSKEVLRKIDMAIYVLDASQEITVEEREEAKKLFQRFHIPYVFVWNK 128 Query: 329 SDL 331 D+ Sbjct: 129 RDM 131 >gi|284991408|ref|YP_003409962.1| ribosome-associated GTPase EngA [Geodermatophilus obscurus DSM 43160] gi|284064653|gb|ADB75591.1| ribosome-associated GTPase EngA [Geodermatophilus obscurus DSM 43160] Length = 447 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 44/184 (23%), Positives = 83/184 (45%), Gaps = 37/184 (20%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE- 279 ++ ++G N GKSSL N LAK + ++V + GTT D + + L G + DTAG+R Sbjct: 183 RVALVGRPNVGKSSLLNRLAKDERSVVDSVAGTTVDPVDSIVTLGGEEWRFVDTAGLRRK 242 Query: 280 --TDDIVEKEGIKRTFLEVENADLILLL---KEINSKKE-------ISFPKNIDFIFIGT 327 T +E RT ++ A++ ++L E+ S+++ I + + F Sbjct: 243 VNTASGMEYYASLRTEAAIQAAEVAVVLLAADEVVSEQDQRVITQVIEAGRALVIAF--- 299 Query: 328 KSDLYSTYTEEYDHL-------------------ISSFTGEGLEELINKIKSILSNKFKK 368 + + T E+ H IS+ TG G+++L ++ L++ + Sbjct: 300 --NKWDTLDEDRRHQLEREIERDLARVKWASRVNISALTGRGVDKLAQHLREALASWETR 357 Query: 369 LPFS 372 +P + Sbjct: 358 VPTA 361 Score = 43.9 bits (102), Expect = 0.056, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 28/55 (50%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 + I+G N GKS+L N + A+V D PG TRD + + G + DT G Sbjct: 11 VAIVGRPNVGKSTLVNRFLGRRAAVVQDTPGVTRDRIAYEALWNGKRFTVVDTGG 65 >gi|171184518|ref|YP_001793437.1| GTP-binding proten HflX [Thermoproteus neutrophilus V24Sta] gi|170933730|gb|ACB38991.1| GTP-binding proten HflX [Thermoproteus neutrophilus V24Sta] Length = 403 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 31/93 (33%), Positives = 53/93 (56%), Gaps = 1/93 (1%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++VI G+++AGK++LFN L +D +V P T + + LDL G V ++DT G + Sbjct: 187 EVVITGYTSAGKTTLFNRLVGED-KLVDGKPFATLETYSRSLDLWGKRVVVTDTIGFIDD 245 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313 + E T E+ +AD+ILL+ + + +E Sbjct: 246 LPPLLVESFHSTLQEIIDADVILLVVDGSEPRE 278 >gi|163841322|ref|YP_001625727.1| GTP-binding protein EngA [Renibacterium salmoninarum ATCC 33209] gi|162954798|gb|ABY24313.1| GTP-binding protein [Renibacterium salmoninarum ATCC 33209] Length = 504 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 40/160 (25%), Positives = 72/160 (45%), Gaps = 21/160 (13%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+L N + + A+V D PG TRD + + + G + DT G Sbjct: 69 LAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVMYNAEWNGREFTVVDTGGWEFDA 128 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPKNI-----DFIFIGTKSDLYS 333 + + ++ + +E AD +L + + + + S K + I +G K+D Sbjct: 129 KGIHQRVAEQAEMAIELADAVLFVVDATVGATAMDESMMKMLRRSKKPIILVGNKADDPR 188 Query: 334 TYT-----------EEYDHLISSFTGEGLEELINKIKSIL 362 T + E + +S+ G G+ +L++KI IL Sbjct: 189 TDSDVAALWGLGLGEPWS--VSAQHGRGVADLLDKIMEIL 226 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 34/58 (58%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 +I ++G N GKSSL N LA + +V + GTTRD + ++L + DTAGIR Sbjct: 243 RIALIGRPNVGKSSLLNKLAGSERVVVDPMAGTTRDPVDEFIELGDRTWRFVDTAGIR 300 >gi|319793097|ref|YP_004154737.1| GTP-binding protein hsr1-related protein [Variovorax paradoxus EPS] gi|315595560|gb|ADU36626.1| GTP-binding protein HSR1-related protein [Variovorax paradoxus EPS] Length = 469 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 2/65 (3%) Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKK-DVAIVTDIPGTTRDVLTIDLDLEG-YLVKIS 272 + + +I ++GH+NAGK+SL L ++ V+ PGTTR V + DL++ G V+ Sbjct: 1 MTQEAIRIAVVGHTNAGKTSLLRTLTRRVSFGEVSQRPGTTRHVESADLEVNGEAAVRFF 60 Query: 273 DTAGI 277 DT G+ Sbjct: 61 DTPGL 65 >gi|153005017|ref|YP_001379342.1| GTP-binding protein Era [Anaeromyxobacter sp. Fw109-5] gi|152028590|gb|ABS26358.1| GTP-binding protein Era [Anaeromyxobacter sp. Fw109-5] Length = 310 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 1/97 (1%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R G+ + I+G N GKS+L N + + VAIVT P TTR + + +G + DT G Sbjct: 10 RAGF-VAIVGRPNVGKSTLLNRVLGEHVAIVTPRPQTTRTRILGIWNGKGAQIAFFDTPG 68 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313 + + + ++ ++ D +L+L E + E Sbjct: 69 LHRAKGPLNRRMVEVALTTLDEVDAVLMLVEAGTGPE 105 >gi|332799884|ref|YP_004461383.1| GTP-binding proten HflX [Tepidanaerobacter sp. Re1] gi|332697619|gb|AEE92076.1| GTP-binding proten HflX [Tepidanaerobacter sp. Re1] Length = 413 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 50/177 (28%), Positives = 81/177 (45%), Gaps = 29/177 (16%) Query: 222 IVILGHSNAGKSSLFNALAKKDVA----IVTDIPGTTRDVLTIDLDLEGYLVKISDTAG- 276 I ++G++NAGKS+L NAL DV + + TTR+++ D G V +SDT G Sbjct: 196 ISLVGYTNAGKSTLMNALTDADVKTGDRLFETLDTTTRNLVLPD----GRKVLLSDTVGF 251 Query: 277 IRETDDIVEKEGIKRTFLEVENADLIL-------------------LLKEINSKKEISFP 317 IR+ + E + T EV+ ADL++ +LKE+ +++ Sbjct: 252 IRKLPHHL-VEAFRATLEEVKEADLLIHVADGSSPTIDEDIFVVNSVLKELGAEQTPIII 310 Query: 318 KNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374 G S Y ++ IS+ TG+ L++L+ I IL + +K IP Sbjct: 311 AINKIDISGDASVFIEGYNKDNTIGISALTGKNLDKLLEAICRILPSNRRKAELFIP 367 >gi|330813897|ref|YP_004358136.1| GTP-binding protein EngA [Candidatus Pelagibacter sp. IMCC9063] gi|327486992|gb|AEA81397.1| GTP-binding protein EngA [Candidatus Pelagibacter sp. IMCC9063] Length = 267 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 3/93 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR--- 278 I I+G N GKS+ FN + K+++ V D PGTT+DV++ + DT G++ Sbjct: 5 ISIVGKPNVGKSTFFNKIFSKNISKVADEPGTTKDVISESFLFGNEELVFHDTGGLKKKA 64 Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311 ++ D + K + N+ +++ + + N K Sbjct: 65 KSKDENQSYITKECLTAINNSSIVIFMMDANDK 97 >gi|260200776|ref|ZP_05768267.1| GTP-binding protein EngA [Mycobacterium tuberculosis T46] gi|289443171|ref|ZP_06432915.1| GTP-binding protein EngA [Mycobacterium tuberculosis T46] gi|289416090|gb|EFD13330.1| GTP-binding protein EngA [Mycobacterium tuberculosis T46] Length = 285 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 2/94 (2%) Query: 214 EIIRNGYK--IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 EI +G + ++G N GKS+L N + + A+V DIPG TRD + D G + Sbjct: 19 EIAESGAAPVVAVVGRPNVGKSTLVNRILGRREAVVQDIPGVTRDRVCYDALWTGRRFVV 78 Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 DT G +++ ++ + + AD ++L+ Sbjct: 79 QDTGGWEPNAKGLQRLVAEQASVAMRTADAVILV 112 Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 35/58 (60%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 ++ ++G N GKSSL N LA ++V + GTT D + ++L G + + DTAG+R Sbjct: 201 RVALVGKPNVGKSSLLNKLAGDQRSVVHEAAGTTVDPVDSLIELGGDVWRFVDTAGLR 258 >gi|257465989|ref|ZP_05630300.1| GTP-binding protein [Fusobacterium gonidiaformans ATCC 25563] gi|315917145|ref|ZP_07913385.1| small GTP-binding protein [Fusobacterium gonidiaformans ATCC 25563] gi|313691020|gb|EFS27855.1| small GTP-binding protein [Fusobacterium gonidiaformans ATCC 25563] Length = 400 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 66/123 (53%), Gaps = 9/123 (7%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276 N + G NAGKSSLFN L +D ++V+ GTT D + ++L GY +++ DTAG Sbjct: 9 NRKHVAFFGKRNAGKSSLFNLLLGEDYSLVSSHLGTTTDPVYKAMELVGYGPIRLIDTAG 68 Query: 277 IRETDDIVE------KEGIKR--TFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTK 328 + + ++ E KE +++ + V +A + ++E K++ +I ++F+ K Sbjct: 69 LDDIGELGELRVKKSKEVLRKIDMAIYVLDASQEITVEEREEAKKLFQRFHIPYVFVWNK 128 Query: 329 SDL 331 D+ Sbjct: 129 RDM 131 >gi|170756488|ref|YP_001783220.1| GTP-binding protein [Clostridium botulinum B1 str. Okra] gi|169121700|gb|ACA45536.1| GTP-binding protein [Clostridium botulinum B1 str. Okra] Length = 399 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 42/125 (33%), Positives = 64/125 (51%), Gaps = 16/125 (12%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276 N I +G +N+GKSSL NA+ +D++IV+ I GTT D ++ ++L V +DTAG Sbjct: 8 NRIHITFIGKTNSGKSSLMNAIIGQDISIVSSIEGTTTDPVSKAMELIPLGPVLFTDTAG 67 Query: 277 IRETDDI--VEKEGIKRTFLEVENA---------DLILLLKEINSKKEISFPKNIDFIFI 325 + + ++ V E T L+ A D+ L K IN KE +NI +I + Sbjct: 68 LEDNTELGKVRIEKTLNTLLKTNFAIYVMSAKDIDISLYEKTINKFKE----QNISYITV 123 Query: 326 GTKSD 330 K D Sbjct: 124 VNKID 128 >gi|326504644|dbj|BAK06613.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 303 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 55/197 (27%), Positives = 89/197 (45%), Gaps = 27/197 (13%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTA 275 R+GY + +LG N GKS+L N + + ++IVTD P TTR +L I + E Y + + DT Sbjct: 101 RSGY-VAVLGKPNVGKSTLINQIVGQKLSIVTDKPQTTRHRILGICSEPE-YQIILYDTP 158 Query: 276 G-IRETDDIVEKEGIKRTFLEVENADLIL--------------LLKEINSKKEISFP--- 317 G I++ ++ +K + NAD ++ +L+E KE P Sbjct: 159 GVIKKEMHKLDSMMMKNVQSAIGNADCVIVVADASKVPEKIDDMLEEGVGNKETKVPVVL 218 Query: 318 --KNIDFIF---IGTKSDLYSTYTEEYDHL-ISSFTGEGLEELINKIKSILSNKFKKLPF 371 D I I K + Y +T+ D + IS+ G G++++ I S L P Sbjct: 219 VLNKKDMIKPGEIAKKLEWYQKFTDVDDVIPISAKFGHGVDDIKEWILSKLPLGPAYYPK 278 Query: 372 SIPSHKRHLYHLSQTVR 388 I S + + + VR Sbjct: 279 DIASEHPERFFVGEIVR 295 >gi|302206113|gb|ADL10455.1| GTP-binding protein EngA [Corynebacterium pseudotuberculosis C231] Length = 540 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 41/84 (48%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKSSL N + A+V D PG TRD ++ D G + DT G Sbjct: 108 VAIVGRPNVGKSSLVNRFLGRREAVVEDFPGVTRDRVSYLADWGGQRFWVQDTGGWDPNV 167 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + ++ + + AD+I+++ Sbjct: 168 KGIHGAIARQAEVAMATADVIIMV 191 Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust. Identities = 24/81 (29%), Positives = 46/81 (56%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L+ +++ + + I+ ++ ++G N GKSSL N ++ +D ++V + GTT D + Sbjct: 258 LEQVLAAFPEEPRSASIVEGPRRVALVGKPNVGKSSLLNKISGEDRSVVDNASGTTVDPV 317 Query: 259 TIDLDLEGYLVKISDTAGIRE 279 + L+ L K DTAG+R+ Sbjct: 318 DSLVQLDQKLWKFIDTAGLRK 338 >gi|300858400|ref|YP_003783383.1| hypothetical protein cpfrc_00982 [Corynebacterium pseudotuberculosis FRC41] gi|300685854|gb|ADK28776.1| hypothetical protein cpfrc_00982 [Corynebacterium pseudotuberculosis FRC41] gi|302330667|gb|ADL20861.1| GTP-binding protein EngA [Corynebacterium pseudotuberculosis 1002] gi|308276351|gb|ADO26250.1| GTP-binding protein EngA [Corynebacterium pseudotuberculosis I19] Length = 540 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 41/84 (48%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKSSL N + A+V D PG TRD ++ D G + DT G Sbjct: 108 VAIVGRPNVGKSSLVNRFLGRREAVVEDFPGVTRDRVSYLADWGGQRFWVQDTGGWDPNV 167 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + ++ + + AD+I+++ Sbjct: 168 KGIHGAIARQAEVAMATADVIIMV 191 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 24/81 (29%), Positives = 46/81 (56%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L+ +++ + + I+ ++ ++G N GKSSL N ++ +D ++V + GTT D + Sbjct: 258 LEQVLAAFPEEPRSASIVEGPRRVALVGKPNVGKSSLLNKISGEDRSVVDNASGTTVDPV 317 Query: 259 TIDLDLEGYLVKISDTAGIRE 279 + L+ L K DTAG+R+ Sbjct: 318 DSLVQLDQKLWKFIDTAGLRK 338 >gi|125623108|ref|YP_001031591.1| GTP-binding protein YqeH [Lactococcus lactis subsp. cremoris MG1363] gi|124491916|emb|CAL96837.1| conserved hypothetical protein [Lactococcus lactis subsp. cremoris MG1363] Length = 381 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 35/103 (33%), Positives = 50/103 (48%), Gaps = 15/103 (14%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268 E R G + ++G +N GKS+L NA+ K +DV + PGTT D + I LD + L Sbjct: 175 EHYRRGRDVYVVGVTNVGKSTLINAIIKSASGSEDVITTSRFPGTTLDKIEIPLDEDSAL 234 Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311 + DT GI + +LE E+ + KEIN K Sbjct: 235 I---DTPGIIHRGQMAH-------YLEPEDLKYVSPRKEINPK 267 >gi|7208811|emb|CAB76934.1| putative GTP-binding protein [Clostridium thermocellum] Length = 400 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 78/155 (50%), Gaps = 12/155 (7%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276 N I G NAGKSS+ NA+ +++AIV+D+ GTT + + ++L V I DT G Sbjct: 10 NRLHIGFFGKRNAGKSSVVNAVTGQNLAIVSDVKGTTTNPVYKAMELLPLGPVVIIDTPG 69 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTK 328 I + + E +KR+ + D+ +L+ + K E+ K+I ++ + K Sbjct: 70 IDDKGTLGEMR-VKRSRQVLNKTDIAVLVIDATCGKSEDDEKLIELFEKKDIKYVVVYNK 128 Query: 329 SDL--YSTYTEEYDHLISSFTGEGLEELINKIKSI 361 +DL + + + +S+ TG + +L KI S+ Sbjct: 129 ADLEGHEETVGDNEIYVSAKTGYNINKLKEKIASL 163 >gi|78045135|ref|YP_359291.1| GTP-binding protein Era [Carboxydothermus hydrogenoformans Z-2901] gi|123576937|sp|Q3AEZ3|ERA_CARHZ RecName: Full=GTPase Era gi|77997250|gb|ABB16149.1| GTP-binding protein Era [Carboxydothermus hydrogenoformans Z-2901] Length = 298 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 49/89 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+L N + +AI++D P TTR+ + L E + DT G+++ Sbjct: 8 VSIVGRPNVGKSTLLNQVVGTKIAIMSDKPQTTRNKIRAVLTSEKGQIIFIDTPGVQKPR 67 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINS 310 + + + +K+ ++ D++L + E NS Sbjct: 68 NKLGEFMLKQALTSLDEVDVLLYVVEANS 96 >gi|219856133|ref|YP_002473255.1| hypothetical protein CKR_2790 [Clostridium kluyveri NBRC 12016] gi|219569857|dbj|BAH07841.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 605 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 51/188 (27%), Positives = 84/188 (44%), Gaps = 35/188 (18%) Query: 220 YKIVILGHSNAGKSSLFNALAK---------KDVAIVTDIPGTTRDVLTIDLDL-EGYLV 269 Y + ++G++N+GKS+L N L + KD D+ T D T ++L +G + Sbjct: 374 YNVSLVGYTNSGKSTLRNKLCEIAVPKESVVKDKVFEADMLFATLDTTTRAVELKDGRTI 433 Query: 270 KISDTAGI--RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF--- 324 I+DT G + D+VE K T EV +DL+L + +I+S+ +++D + Sbjct: 434 TITDTVGFINKLPHDLVE--AFKSTLEEVYYSDLLLHVVDISSEDAYQHIESVDKVLNQL 491 Query: 325 -IGTK-----------------SDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKF 366 I K D+ Y IS+ G LEEL+ +I +L Sbjct: 492 GINDKPVLLVFNKIDKGKTEKIEDIKDKYNGVESIYISAKQGINLEELLERISHMLPQSI 551 Query: 367 KKLPFSIP 374 KK+ + IP Sbjct: 552 KKVEYLIP 559 >gi|84387450|ref|ZP_00990469.1| putative GTPase YlqF [Vibrio splendidus 12B01] gi|84377703|gb|EAP94567.1| putative GTPase YlqF [Vibrio splendidus 12B01] Length = 311 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 55/104 (52%), Gaps = 13/104 (12%) Query: 178 FSEEEDVQNF----SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233 F +E+ V+ S KE +N ++ L ++ H Q +G+ IR +I+G N GKS Sbjct: 75 FEKEQGVKAIAITTSVKEEVNHVMELVRKLAPHREQ--MGKNIRT----MIMGIPNVGKS 128 Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 ++ N LA + +A+ + P TR I+L G + +SDT GI Sbjct: 129 TIINCLAGRTIAVTGNQPAVTRRQQRINLQ-NGVI--LSDTPGI 169 >gi|299133863|ref|ZP_07027057.1| GTP-binding proten HflX [Afipia sp. 1NLS2] gi|298591699|gb|EFI51900.1| GTP-binding proten HflX [Afipia sp. 1NLS2] Length = 464 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 52/179 (29%), Positives = 81/179 (45%), Gaps = 35/179 (19%) Query: 217 RNGYKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDT 274 R Y++V L G++NAGKS+LFN L + DV D+ T D L L G ISDT Sbjct: 225 RVPYRVVALVGYTNAGKSTLFNRLTRADVQ-AADMLFATLDPTLRALKLPHGGKAMISDT 283 Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNID------------- 321 G + + T EV AD+IL +++I+ + + +++D Sbjct: 284 VGFISDLPTMLVAAFRATLEEVIEADVILHVRDISHEDAEAQERDVDQVLRQLNIDTDSG 343 Query: 322 --FIFIGTKSDLYSTYTEEYDH---------------LISSFTGEGLEELINKIKSILS 363 I + K D +S EE ++ L+S+ TGEG+E L+ I+ L+ Sbjct: 344 HRLIEVWNKIDRFS--PEERENLARIAARRPPERPCFLVSAETGEGVEALLEAIEERLA 400 >gi|239904818|ref|YP_002951556.1| putative GTP-binding protein [Desulfovibrio magneticus RS-1] gi|239794681|dbj|BAH73670.1| putative GTP-binding protein [Desulfovibrio magneticus RS-1] Length = 405 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 29/63 (46%), Positives = 39/63 (61%), Gaps = 3/63 (4%) Query: 218 NGYKIVI--LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDT 274 G ++VI +G NAGKSSL NA+ +DVAIV+D GTT D + +L V + DT Sbjct: 11 RGVRLVITFVGRRNAGKSSLINAVTGQDVAIVSDFAGTTTDPVAKPYELLPLGPVTLYDT 70 Query: 275 AGI 277 AG+ Sbjct: 71 AGL 73 >gi|153955766|ref|YP_001396531.1| hypothetical protein CKL_3152 [Clostridium kluyveri DSM 555] gi|146348624|gb|EDK35160.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555] Length = 592 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 51/188 (27%), Positives = 84/188 (44%), Gaps = 35/188 (18%) Query: 220 YKIVILGHSNAGKSSLFNALAK---------KDVAIVTDIPGTTRDVLTIDLDL-EGYLV 269 Y + ++G++N+GKS+L N L + KD D+ T D T ++L +G + Sbjct: 361 YNVSLVGYTNSGKSTLRNKLCEIAVPKESVVKDKVFEADMLFATLDTTTRAVELKDGRTI 420 Query: 270 KISDTAGI--RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF--- 324 I+DT G + D+VE K T EV +DL+L + +I+S+ +++D + Sbjct: 421 TITDTVGFINKLPHDLVE--AFKSTLEEVYYSDLLLHVVDISSEDAYQHIESVDKVLNQL 478 Query: 325 -IGTK-----------------SDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKF 366 I K D+ Y IS+ G LEEL+ +I +L Sbjct: 479 GINDKPVLLVFNKIDKGKTEKIEDIKDKYNGVESIYISAKQGINLEELLERISHMLPQSI 538 Query: 367 KKLPFSIP 374 KK+ + IP Sbjct: 539 KKVEYLIP 546 >gi|330448111|ref|ZP_08311759.1| conserved hypothetical protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492302|dbj|GAA06256.1| conserved hypothetical protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 316 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 9/85 (10%) Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252 +N I+ L ++ H + G+ IR +I+G N GKS++ NALA + VAI + P Sbjct: 98 VNQIMDLCRKLAPHREEA--GKKIRT----MIMGIPNVGKSTIINALAGRTVAITGNQPA 151 Query: 253 TTRDVLTIDLDLEGYLVKISDTAGI 277 TR I+LD G L +SDT GI Sbjct: 152 VTRQQQRINLD-NGVL--LSDTPGI 173 >gi|229815234|ref|ZP_04445570.1| hypothetical protein COLINT_02280 [Collinsella intestinalis DSM 13280] gi|229809244|gb|EEP45010.1| hypothetical protein COLINT_02280 [Collinsella intestinalis DSM 13280] Length = 340 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 1/92 (1%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273 E R+G+ + ++G NAGKS+L NA + VAI + + TTR L ++ E + I D Sbjct: 43 EGFRSGF-VALVGRPNAGKSTLLNACYGEKVAITSPVAQTTRRRLRAVVNREDCQLVIVD 101 Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 T GI + D + E K E+ + D+I + Sbjct: 102 TPGIHKPKDGLGSELNKSALGELSDVDVIAFV 133 >gi|114704562|ref|ZP_01437470.1| GTP binding protein-like [Fulvimarina pelagi HTCC2506] gi|114539347|gb|EAU42467.1| GTP binding protein-like [Fulvimarina pelagi HTCC2506] Length = 459 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 49/217 (22%), Positives = 90/217 (41%), Gaps = 39/217 (17%) Query: 222 IVILGHSNAGKSSLFNALAKKDV-----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 + ++G++NAGKS+LFN + DV T P R L G + SDT G Sbjct: 225 VALVGYTNAGKSTLFNRMTGADVFAQNLLFATLDPTMRRTTLA-----HGTEILFSDTVG 279 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFI----------- 325 + T EV AD+IL +++++ ++ +++ I Sbjct: 280 FISELPTHLVAAFRATLEEVIEADIILHIRDVSDPDSLAQAEDVRQILRDLEIDADDTDH 339 Query: 326 ------------GTKSDLYSTYT-----EEYDHLISSFTGEGLEELINKIKSILSNKFKK 368 G++ + T +E H++S++TGEG+E L+ I+ ++ K + Sbjct: 340 VVEVWNKIDRVDGSERERIETLAANEAEKERPHVVSAWTGEGIEALLADIERRIAGKIAE 399 Query: 369 LPFSI-PSHKRHLYHLSQTVRYLEMASLNEKDCGLDI 404 L ++ P R+L + + L+ L + L I Sbjct: 400 LAVTLDPDGLRYLSWIYENASVLDREDLEDGSIHLQI 436 >gi|210615490|ref|ZP_03290617.1| hypothetical protein CLONEX_02833 [Clostridium nexile DSM 1787] gi|210150339|gb|EEA81348.1| hypothetical protein CLONEX_02833 [Clostridium nexile DSM 1787] Length = 396 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 49/166 (29%), Positives = 79/166 (47%), Gaps = 25/166 (15%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTAGIRE 279 I I G NAGKSS+ NA+ +D+AIV+DI GTT D + ++L G +V I DT G+ + Sbjct: 14 IGIFGKRNAGKSSVINAITGQDLAIVSDIKGTTTDPVLKSMELLPLGPVVLI-DTPGLDD 72 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKE------------INSKKEISFPKNIDFIFIGT 327 + IK+ + + D+ +L+ + + KE KNI ++ + Sbjct: 73 EGKLGTLR-IKKAYQMLNKTDIAVLVVDGSIGMTEEDDRILTRIKE----KNIPYVIVFN 127 Query: 328 KSDLYS-----TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKK 368 K DL + T E + +S+ G ++ L I S L + K Sbjct: 128 KMDLITDASVNTRQESHSLQVSAKNGYHIQALKELIASQLPKELTK 173 >gi|89053015|ref|YP_508466.1| GTP-binding protein Era [Jannaschia sp. CCS1] gi|88862564|gb|ABD53441.1| GTP-binding protein Era [Jannaschia sp. CCS1] Length = 312 Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust. Identities = 45/182 (24%), Positives = 86/182 (47%), Gaps = 30/182 (16%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTIDLDLEGYLVKISDTA 275 R G+ I ++G NAGKS+L N + V+IVT TTR + + ++ + LV + DT Sbjct: 14 RAGF-IALIGEPNAGKSTLLNRMVGAKVSIVTHKVQTTRARIRGVAMEGDSQLVFV-DTP 71 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILL------------------LKEINSKKEISFP 317 G+ +++ +K + +AD+++L LKE ++++ Sbjct: 72 GLFRPRRRLDRAMVKAAWTGAADADVVVLLIEAHRGLTDGVQAILDGLKERTGDRKVALA 131 Query: 318 KN-IDF----IFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372 N ID + + DL + Y + ++IS+ G G++EL ++ L+ + + P+ Sbjct: 132 INKIDRVDAPVLLKLTEDLNAAYPFDETYMISAEKGHGVKEL----RTWLAAEVPEGPWL 187 Query: 373 IP 374 P Sbjct: 188 YP 189 >gi|237736577|ref|ZP_04567058.1| GTP-binding protein [Fusobacterium mortiferum ATCC 9817] gi|229420439|gb|EEO35486.1| GTP-binding protein [Fusobacterium mortiferum ATCC 9817] Length = 406 Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust. Identities = 54/171 (31%), Positives = 83/171 (48%), Gaps = 34/171 (19%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDTA 275 N I I G +NAGKSSL N + + +++V++ GTT D + ++L G +V I DTA Sbjct: 8 NRVHIAIYGRTNAGKSSLINKITNQSISLVSETRGTTTDPVYKAMELLPIGPVVFI-DTA 66 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLL---------KEINSKKEISFPKNID----- 321 GI +T ++ E +K+T + D+ LLL +E+N +KE + + I Sbjct: 67 GIDDTTELGELR-VKKTKEILNKMDIALLLISTEVVLENQELNYEKE--WIREIKKREKP 123 Query: 322 FIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372 FI I K DL S E L+E+ K+K L + K+ S Sbjct: 124 FIVILNKVDLVSV--------------EKLQEIEEKVKRELGCEISKVTTS 160 >gi|86605806|ref|YP_474569.1| GTP-binding protein [Synechococcus sp. JA-3-3Ab] gi|86554348|gb|ABC99306.1| GTP-binding protein [Synechococcus sp. JA-3-3Ab] Length = 506 Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 35/61 (57%), Gaps = 2/61 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG--YLVKISDTAGIR 278 K+V+ G +AGK+SL NAL + V V GTT+ V D DL G + V+I D GI Sbjct: 134 KVVVFGTGSAGKTSLVNALLGRRVGAVGATLGTTQAVAVYDWDLPGIPHPVQIVDCPGIL 193 Query: 279 E 279 E Sbjct: 194 E 194 >gi|325106043|ref|YP_004275697.1| GTP-binding protein Era [Pedobacter saltans DSM 12145] gi|324974891|gb|ADY53875.1| GTP-binding protein Era [Pedobacter saltans DSM 12145] Length = 292 Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 50/90 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G NAGKS+L N L + +AI+T TTR + ++ E Y + SDT GI + Sbjct: 8 VSIVGKPNAGKSTLMNTLVGEKMAIITSKAQTTRHRIIGIVNEEDYQIVFSDTPGIIKPA 67 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK 311 +++ + + +AD++L + +IN K Sbjct: 68 YKLQESMMDAVQGSLVDADILLFVTDINEK 97 >gi|72161252|ref|YP_288909.1| GTP-binding protein Era [Thermobifida fusca YX] gi|71914984|gb|AAZ54886.1| Small GTP-binding protein domain [Thermobifida fusca YX] Length = 315 Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust. Identities = 38/138 (27%), Positives = 67/138 (48%), Gaps = 10/138 (7%) Query: 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261 D ++ +S E R+G+ + +G N GKS+L NAL + VAI +D P TTR + Sbjct: 5 DTTTPLSAPTQQEGFRSGF-VCFIGRPNVGKSTLMNALVGRKVAITSDRPQTTRRTIRGI 63 Query: 262 LDLEGYLVKISDTAGIRETDDIVEKE---GIKRTFLEVE------NADLILLLKEINSKK 312 + E + I DT G+ + ++ + ++ T +EV+ AD + + + Sbjct: 64 VHRENAQLIIVDTPGLHKPRTLLGERLDSLVRSTLVEVDVIGFCIPADEPIGRGDTYIAR 123 Query: 313 EISFPKNIDFIFIGTKSD 330 E++ K + I TK+D Sbjct: 124 ELAQQKETPVVAIVTKTD 141 >gi|68535955|ref|YP_250660.1| bifunctional cytidylate kinase/GTP-binding protein [Corynebacterium jeikeium K411] gi|68263554|emb|CAI37042.1| cytidylate kinase [Corynebacterium jeikeium K411] Length = 777 Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 39/65 (60%) Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274 ++ ++ ++G N GKSSL N + ++ ++V ++ GTT D + ++LE K DT Sbjct: 511 VVSGPRRVALVGRPNVGKSSLLNKITGEERSVVNNVAGTTVDPVDSIVELEEKTWKFVDT 570 Query: 275 AGIRE 279 AGIR+ Sbjct: 571 AGIRK 575 Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust. Identities = 40/184 (21%), Positives = 75/184 (40%), Gaps = 28/184 (15%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+L N + A+V D PG TRD ++ + G + DT G Sbjct: 345 VAIVGRPNVGKSTLVNRFIGRREAVVEDFPGVTRDRISYLGEWSGRRFWVQDTGGWDPDA 404 Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKEISFPK----NIDFIFIGTKSDLYS 333 + ++ +E AD+I+ + + I S E+ K + I + K D + Sbjct: 405 KGIHAAIARQAETAMETADVIVFVVDSKVGITSTDEVIARKLQRSKVPVIVVANKCDADA 464 Query: 334 TYTE---------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384 + + + +S+ G+G ++++++ + P H R L +S Sbjct: 465 QLGDVAEFWALGLDNPYPVSAQHGKGAADVMDEVLRVF-----------PEHPRELSVVS 513 Query: 385 QTVR 388 R Sbjct: 514 GPRR 517 >gi|313772407|gb|EFS38373.1| GTP-binding protein Era [Propionibacterium acnes HL074PA1] gi|313807417|gb|EFS45904.1| GTP-binding protein Era [Propionibacterium acnes HL087PA2] gi|313809925|gb|EFS47646.1| GTP-binding protein Era [Propionibacterium acnes HL083PA1] gi|313818463|gb|EFS56177.1| GTP-binding protein Era [Propionibacterium acnes HL046PA2] gi|313820226|gb|EFS57940.1| GTP-binding protein Era [Propionibacterium acnes HL036PA1] gi|313822965|gb|EFS60679.1| GTP-binding protein Era [Propionibacterium acnes HL036PA2] gi|313825107|gb|EFS62821.1| GTP-binding protein Era [Propionibacterium acnes HL063PA1] gi|313830256|gb|EFS67970.1| GTP-binding protein Era [Propionibacterium acnes HL007PA1] gi|313834057|gb|EFS71771.1| GTP-binding protein Era [Propionibacterium acnes HL056PA1] gi|314925454|gb|EFS89285.1| GTP-binding protein Era [Propionibacterium acnes HL036PA3] gi|314960100|gb|EFT04202.1| GTP-binding protein Era [Propionibacterium acnes HL002PA2] gi|314973262|gb|EFT17358.1| GTP-binding protein Era [Propionibacterium acnes HL053PA1] gi|314975937|gb|EFT20032.1| GTP-binding protein Era [Propionibacterium acnes HL045PA1] gi|314978306|gb|EFT22400.1| GTP-binding protein Era [Propionibacterium acnes HL072PA2] gi|314984045|gb|EFT28137.1| GTP-binding protein Era [Propionibacterium acnes HL005PA1] gi|314987808|gb|EFT31899.1| GTP-binding protein Era [Propionibacterium acnes HL005PA2] gi|314990029|gb|EFT34120.1| GTP-binding protein Era [Propionibacterium acnes HL005PA3] gi|315080746|gb|EFT52722.1| GTP-binding protein Era [Propionibacterium acnes HL078PA1] gi|315084416|gb|EFT56392.1| GTP-binding protein Era [Propionibacterium acnes HL027PA2] gi|315085756|gb|EFT57732.1| GTP-binding protein Era [Propionibacterium acnes HL002PA3] gi|315088826|gb|EFT60802.1| GTP-binding protein Era [Propionibacterium acnes HL072PA1] gi|315096174|gb|EFT68150.1| GTP-binding protein Era [Propionibacterium acnes HL038PA1] gi|327326091|gb|EGE67881.1| GTP-binding protein Era [Propionibacterium acnes HL096PA2] gi|327332038|gb|EGE73775.1| GTP-binding protein Era [Propionibacterium acnes HL096PA3] gi|327443241|gb|EGE89895.1| GTP-binding protein Era [Propionibacterium acnes HL013PA2] gi|327446027|gb|EGE92681.1| GTP-binding protein Era [Propionibacterium acnes HL043PA2] gi|327447995|gb|EGE94649.1| GTP-binding protein Era [Propionibacterium acnes HL043PA1] gi|328753568|gb|EGF67184.1| GTP-binding protein Era [Propionibacterium acnes HL020PA1] gi|328760408|gb|EGF73976.1| GTP-binding protein Era [Propionibacterium acnes HL099PA1] Length = 342 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 47/192 (24%), Positives = 82/192 (42%), Gaps = 27/192 (14%) Query: 210 GKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266 ++ E R G+ + +G NAGKS+L NAL +AI + P TTR V+ + E Sbjct: 30 ARVAESTRAGFHSGFVCFVGRPNAGKSTLTNALVGSKIAIASSKPQTTRHVIRGVVTDEK 89 Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEIS-F 316 + + DT G+ + ++ + F D+I + N + +I+ Sbjct: 90 SQIVVIDTPGLHKPRTLLGQRLNDLVFDTWTQVDVIGVCLPSNQRIGPGDTYLVSQIAEL 149 Query: 317 PKNIDFIFIGTKSDLYS-TYTEEYDHLISSFTGE-GLE------------ELINKIKSIL 362 P+ I + TKSDL S E+ I GE G+E E I++++ ++ Sbjct: 150 PRRPTLIALATKSDLVSKARMAEHLAAIDKLQGEVGIEFVEVVPCSAVSGEQIDEVRDVI 209 Query: 363 SNKFKKLPFSIP 374 ++ + P P Sbjct: 210 ASLLPEGPAYYP 221 >gi|215427036|ref|ZP_03424955.1| GTP-binding protein EngA [Mycobacterium tuberculosis T92] gi|289750270|ref|ZP_06509648.1| GTP-binding protein engA [Mycobacterium tuberculosis T92] gi|289690857|gb|EFD58286.1| GTP-binding protein engA [Mycobacterium tuberculosis T92] Length = 334 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 24/84 (28%), Positives = 43/84 (51%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+L N + + A+V DIPG TRD + D G + DT G Sbjct: 29 VAVVGRPNVGKSTLVNRILGRREAVVQDIPGVTRDRVCYDALWTGRRFVVQDTGGWEPNA 88 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 +++ ++ + + AD ++L+ Sbjct: 89 KGLQRLVAEQASVAMRTADAVILV 112 Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 35/58 (60%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 ++ ++G N GKSSL N LA ++V + GTT D + ++L G + + DTAG+R Sbjct: 201 RVALVGKPNVGKSSLLNKLAGDQRSVVHEAAGTTVDPVDSLIELGGDVWRFVDTAGLR 258 >gi|126658532|ref|ZP_01729679.1| hypothetical protein CY0110_25461 [Cyanothece sp. CCY0110] gi|126620119|gb|EAZ90841.1| hypothetical protein CY0110_25461 [Cyanothece sp. CCY0110] Length = 344 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 70/249 (28%), Positives = 118/249 (47%), Gaps = 33/249 (13%) Query: 182 EDVQN-FSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 E +Q+ + K +LN +I+ ++++G+L K+VI G +AGK+SL NAL Sbjct: 105 ETIQDKVAQKALLNR----SQEIAENLTRGEL--------KVVIFGTGSAGKTSLVNALL 152 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYL--VKISDTAGIRETD-DIVEKEGIKRTFLEVE 297 + + V GTT+ T L L+G + I+DT GI E + E+E + R Sbjct: 153 GEIIGQVQATMGTTKIGETYCLKLKGLSREILITDTPGILEAGIEGTEREQLARQL--AT 210 Query: 298 NADLILLLKEINSKKEISFPKNIDFIFIGTKSDL----YSTYTEEYDHLISSFTGEGLEE 353 ADL+L + + + ++ P I + IG +S L YTEE ++ I E ++ Sbjct: 211 EADLLLFVVDNDLRQSEYKPLQI-LVDIGKRSLLVFNKVDLYTEEEENQIIQKLKERVKS 269 Query: 354 LI--NKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYL--EMASLNEKDCGLDIIAENL 409 I + S+ +N P + S S + L +A++ + G D+IA+N+ Sbjct: 270 FIPEQDVISVAAN-----PQTFASETGQTIQPSPDILPLIKRLAAILRAE-GEDLIADNI 323 Query: 410 RLASVSLGK 418 L S LG+ Sbjct: 324 LLQSQRLGE 332 >gi|319427721|gb|ADV55795.1| GTP-binding proten HflX [Shewanella putrefaciens 200] Length = 435 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 64/227 (28%), Positives = 98/227 (43%), Gaps = 34/227 (14%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRE- 279 + ++G++NAGKS+LFNAL DV + T L LDL V ++DT G IR Sbjct: 200 VSLVGYTNAGKSTLFNALTSSDVYAADQLFATLDPTLR-KLDLPDGAVILADTVGFIRHL 258 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEI-------NSKKEISFPKNIDF-----IFIGT 327 D+V K T E A+L+L + + N ++ S K+ID + + Sbjct: 259 PHDLV--AAFKATLQETRQAELLLHIVDCADENMADNFEQVQSVLKDIDADEVMQLIVCN 316 Query: 328 KSDLYSTYTE--EYDH-------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378 K DL T EYD +S+ G + L+ I ++ ++L IP+ Sbjct: 317 KIDLLEDVTPRIEYDDQGKPIRVWVSAQKRLGFDLLLKAITELIGEVIRELTLRIPATAG 376 Query: 379 HLYHLSQTVRYLEMASLNEKDCGLDIIAENL------RLASVSLGKI 419 H +L Q R + D G I++ L RLA S G++ Sbjct: 377 H--YLGQFYRLDAIQQKEYDDLGNCILSVRLSDADWRRLAKQSQGEL 421 >gi|313893454|ref|ZP_07827024.1| hydrogenase maturation GTPase HydF [Veillonella sp. oral taxon 158 str. F0412] gi|313441897|gb|EFR60319.1| hydrogenase maturation GTPase HydF [Veillonella sp. oral taxon 158 str. F0412] Length = 433 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 1/67 (1%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAG 276 N I G NAGKS+L N L + V++V+D+ GTT D ++ ++ L V I+DTAG Sbjct: 8 NRVHIGFFGRCNAGKSTLINMLTDQPVSLVSDVAGTTTDPVSKSMEILPLGPVVITDTAG 67 Query: 277 IRETDDI 283 I +T ++ Sbjct: 68 IDDTTEL 74 >gi|311113256|ref|YP_003984478.1| GTP-binding protein [Rothia dentocariosa ATCC 17931] gi|310944750|gb|ADP41044.1| GTP-binding protein [Rothia dentocariosa ATCC 17931] Length = 549 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 51/176 (28%), Positives = 76/176 (43%), Gaps = 27/176 (15%) Query: 222 IVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 + I G++NAGKSSL N L V A+ + T R T D G +SDT G Sbjct: 306 VAIAGYTNAGKSSLLNRLTDAGVLVENALFATLDPTVRKAQTPD----GIGYTLSDTVGF 361 Query: 278 RETDDIVEKEGIKRTFLEVENADLILLL---------KEINSKKEISF---PKNIDFIFI 325 + E + T EV +AD+IL + +I + +E+ + I I Sbjct: 362 VRSLPTQLVEAFRSTLEEVADADVILHVVDASHPDPEGQIRAVREVIADLDARRIPEIIA 421 Query: 326 GTKSD------LYSTYTEEYDHLI-SSFTGEGLEELINKIKSILSNKFKKLPFSIP 374 K+D L E +H+I S+ TGEG++EL KI + ++ IP Sbjct: 422 LNKADAADPFILERMRQRESNHVIVSARTGEGIDELKQKIADTIPRPSLEVKLLIP 477 >gi|154505209|ref|ZP_02041947.1| hypothetical protein RUMGNA_02722 [Ruminococcus gnavus ATCC 29149] gi|153794407|gb|EDN76827.1| hypothetical protein RUMGNA_02722 [Ruminococcus gnavus ATCC 29149] Length = 397 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 51/167 (30%), Positives = 80/167 (47%), Gaps = 25/167 (14%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTAGIRE 279 I I G NAGKSSL NALA + V+IV+D GTT D + ++L G +V I DT G+ + Sbjct: 14 IGIFGKRNAGKSSLINALAGQPVSIVSDFKGTTTDPVKKAMELLPLGPVVLI-DTPGLDD 72 Query: 280 TDDIVEKEGIKRTFLEVENADLILLL---------KEINSKKEISFPKNIDFIFIGTKSD 330 T ++ I++T + D+ LL+ ++I ++I K I F+ K D Sbjct: 73 TGELGSLR-IEKTQQILNTTDIALLVIDGQLGITEEDIQILQQIR-KKQIPFVIAVNKMD 130 Query: 331 LYSTYTEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLP 370 L D + +S+ G + EL K +L+ + + P Sbjct: 131 LAPASPVLPDEISPEQVLYVSAAAGTQIHEL----KELLAKQLGQTP 173 >gi|90577937|ref|ZP_01233748.1| putative GTPase [Vibrio angustum S14] gi|90441023|gb|EAS66203.1| putative GTPase [Vibrio angustum S14] Length = 317 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 9/85 (10%) Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252 +N I+ L ++ H + G+ IR +I+G N GKS++ NALA + VAI + P Sbjct: 99 VNQIMELCRKLAPHREEA--GKKIRT----MIMGIPNVGKSTIINALAGRTVAITGNQPA 152 Query: 253 TTRDVLTIDLDLEGYLVKISDTAGI 277 TR I+LD G L +SDT GI Sbjct: 153 VTRQQQRINLD-NGVL--LSDTPGI 174 >gi|253581692|ref|ZP_04858916.1| GTP binding protein [Fusobacterium varium ATCC 27725] gi|251836041|gb|EES64578.1| GTP binding protein [Fusobacterium varium ATCC 27725] Length = 297 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 2/94 (2%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+L N L + VAIV+D GTTRD + L+L DT GI + Sbjct: 6 IAVVGRPNVGKSTLINKLVSEKVAIVSDKAGTTRDNIKGILNLNDNQYIFIDTPGIHKAK 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 ++ + +++ D+IL L ++ +EIS Sbjct: 66 HLLGEYMTNSAIRVLKDVDVILFL--LDGSQEIS 97 >gi|289427040|ref|ZP_06428756.1| GTP-binding protein Era [Propionibacterium acnes J165] gi|295130499|ref|YP_003581162.1| GTP-binding protein Era [Propionibacterium acnes SK137] gi|289159509|gb|EFD07697.1| GTP-binding protein Era [Propionibacterium acnes J165] gi|291377214|gb|ADE01069.1| GTP-binding protein Era [Propionibacterium acnes SK137] gi|332675335|gb|AEE72151.1| GTP-binding protein Era [Propionibacterium acnes 266] Length = 340 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 47/192 (24%), Positives = 82/192 (42%), Gaps = 27/192 (14%) Query: 210 GKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266 ++ E R G+ + +G NAGKS+L NAL +AI + P TTR V+ + E Sbjct: 28 ARVAESTRAGFHSGFVCFVGRPNAGKSTLTNALVGSKIAIASSKPQTTRHVIRGVVTDEK 87 Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEIS-F 316 + + DT G+ + ++ + F D+I + N + +I+ Sbjct: 88 SQIVVIDTPGLHKPRTLLGQRLNDLVFDTWTQVDVIGVCLPSNQRIGPGDTYLVSQIAEL 147 Query: 317 PKNIDFIFIGTKSDLYS-TYTEEYDHLISSFTGE-GLE------------ELINKIKSIL 362 P+ I + TKSDL S E+ I GE G+E E I++++ ++ Sbjct: 148 PRRPTLIALATKSDLVSKARMAEHLAAIDKLQGEVGIEFVEVVPCSAVSGEQIDEVRDVI 207 Query: 363 SNKFKKLPFSIP 374 ++ + P P Sbjct: 208 ASLLPEGPAYYP 219 >gi|260578662|ref|ZP_05846570.1| ribosome-associated GTPase EngA [Corynebacterium jeikeium ATCC 43734] gi|258603159|gb|EEW16428.1| ribosome-associated GTPase EngA [Corynebacterium jeikeium ATCC 43734] Length = 777 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 39/65 (60%) Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274 ++ ++ ++G N GKSSL N + ++ ++V ++ GTT D + ++LE K DT Sbjct: 511 VVSGPRRVALVGRPNVGKSSLLNKITGEERSVVNNVAGTTVDPVDSIVELEEKTWKFVDT 570 Query: 275 AGIRE 279 AGIR+ Sbjct: 571 AGIRK 575 Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust. Identities = 40/184 (21%), Positives = 75/184 (40%), Gaps = 28/184 (15%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+L N + A+V D PG TRD ++ + G + DT G Sbjct: 345 VAIVGRPNVGKSTLVNRFIGRREAVVEDFPGVTRDRISYLGEWSGRRFWVQDTGGWDPDA 404 Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKEISFPK----NIDFIFIGTKSDLYS 333 + ++ +E AD+I+ + + I S E+ K + I + K D + Sbjct: 405 KGIHAAIARQAETAMETADVIVFVVDSKVGITSTDEVIARKLQRSKVPVIVVANKCDADA 464 Query: 334 TYTE---------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384 + + + +S+ G+G ++++++ + P H R L +S Sbjct: 465 QLGDVAEFWALGLDNPYPVSAQHGKGAADVMDEVLRVF-----------PEHPRELSVVS 513 Query: 385 QTVR 388 R Sbjct: 514 GPRR 517 >gi|300069855|gb|ADJ59255.1| GTP-binding protein YqeH [Lactococcus lactis subsp. cremoris NZ9000] Length = 401 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 35/103 (33%), Positives = 50/103 (48%), Gaps = 15/103 (14%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268 E R G + ++G +N GKS+L NA+ K +DV + PGTT D + I LD + L Sbjct: 195 EHYRRGRDVYVVGVTNVGKSTLINAIIKSASGSEDVITTSRFPGTTLDKIEIPLDEDSAL 254 Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311 + DT GI + +LE E+ + KEIN K Sbjct: 255 I---DTPGIIHRGQMAH-------YLEPEDLKYVSPRKEINPK 287 >gi|257784594|ref|YP_003179811.1| GTP-binding protein Era [Atopobium parvulum DSM 20469] gi|257473101|gb|ACV51220.1| GTP-binding protein Era [Atopobium parvulum DSM 20469] Length = 312 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 1/89 (1%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R+G+ + ++G + GKS+L NA + VAI + + TTR ++ E + I DT G Sbjct: 18 RSGF-VALVGRPSVGKSTLLNACMGQKVAIASPVAQTTRRRFRAVVNGENSQLVIVDTPG 76 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL 305 + + D + KE K E+ +AD+I L Sbjct: 77 LHKPKDALGKELNKAALGELNDADVIAFL 105 >gi|119493901|ref|ZP_01624464.1| Small GTP-binding protein domain protein [Lyngbya sp. PCC 8106] gi|119452341|gb|EAW33534.1| Small GTP-binding protein domain protein [Lyngbya sp. PCC 8106] Length = 550 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 63/220 (28%), Positives = 97/220 (44%), Gaps = 34/220 (15%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY--LVKISDT 274 R K+VI G +AGK+S+ NAL + V V GTT T L L+G + I+DT Sbjct: 128 RGNIKVVIFGTGSAGKTSIVNALMGRMVGKVNAPMGTTEVGETYHLQLKGLEREILITDT 187 Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLY-- 332 GI E + G L E ADL+L + + N ++ + IG +S L Sbjct: 188 PGILEAGEAGSHRGTLARTLATE-ADLLLFVVD-NDLRQSEYQPLYSLAEIGKRSLLVFN 245 Query: 333 --STYTEEYDHLISSFTGEGLEELINK--IKSILSN----------KFKKLPFSIPSHKR 378 YTE+ ++I S E ++ I+ I + +N +FK P +P + Sbjct: 246 KIDRYTEDDQNIILSRLEERVKTFISPEDIVRVAANPQGVILDTGEQFKPEPDIMPLIR- 304 Query: 379 HLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGK 418 +MA + + G D+IA+N+ L S LG+ Sbjct: 305 ------------QMAKVLRAE-GEDLIADNILLQSQRLGE 331 >gi|225018650|ref|ZP_03707842.1| hypothetical protein CLOSTMETH_02600 [Clostridium methylpentosum DSM 5476] gi|224948558|gb|EEG29767.1| hypothetical protein CLOSTMETH_02600 [Clostridium methylpentosum DSM 5476] Length = 310 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 35/102 (34%), Positives = 52/102 (50%), Gaps = 3/102 (2%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKSSL NAL +AIVT+ P TTR +T L E DT G+ + Sbjct: 25 IAIVGKPNVGKSSLLNALTGHKIAIVTNRPQTTRTRITGVLTQEETQYVFIDTPGLLKAR 84 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI 323 + + ++ +K V + D +L+ E E++ P +D I Sbjct: 85 NKLGEKMVKTVRESVADVDAAVLVVEPTG--EVN-PAELDLI 123 >gi|157692414|ref|YP_001486876.1| HflX family GTP-binding protein [Bacillus pumilus SAFR-032] gi|157681172|gb|ABV62316.1| HflX family GTP-binding protein [Bacillus pumilus SAFR-032] Length = 420 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 34/89 (38%), Positives = 49/89 (55%), Gaps = 3/89 (3%) Query: 217 RNG-YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDT 274 +NG ++I I+G++NAGKS+LFN L D + D+ T D +T + L GY V ISDT Sbjct: 196 KNGVFQIAIVGYTNAGKSTLFNQLTDAD-SHEEDLLFATLDPMTRKMTLASGYSVLISDT 254 Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLIL 303 G + + T EV+ AD +L Sbjct: 255 VGFIQDLPTTLIAAFRSTLEEVKEADYLL 283 >gi|150017393|ref|YP_001309647.1| ferrous iron transport protein B [Clostridium beijerinckii NCIMB 8052] gi|149903858|gb|ABR34691.1| ferrous iron transport protein B [Clostridium beijerinckii NCIMB 8052] Length = 602 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 10/85 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL---VKISDTAGIR 278 + +LG+ N GK++L+N L + V + PG T D EG+L +KI D GI Sbjct: 4 VALLGNPNVGKTTLYNLLTGSN-QYVGNWPGVTVD------KKEGFLFESIKIVDLPGIY 56 Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303 D +E + + FLE + DLIL Sbjct: 57 AMDTFSNEEKVSKQFLEEGDVDLIL 81 >gi|307153467|ref|YP_003888851.1| GTP-binding protein Era [Cyanothece sp. PCC 7822] gi|306983695|gb|ADN15576.1| GTP-binding protein Era [Cyanothece sp. PCC 7822] Length = 318 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 3/94 (3%) Query: 215 IIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 I G+K + I+G N GKS+L N L + VAI + + TTR+ L L + + Sbjct: 18 IAPEGFKSGFVAIIGRPNVGKSTLMNQLVGQKVAITSPVAQTTRNRLQGILTTDQAQIIF 77 Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 DT GI + + K +K + + DL+LL+ Sbjct: 78 VDTPGIHKPHHELGKVLVKNAQIAINAVDLVLLV 111 >gi|193213835|ref|YP_001995034.1| GTP-binding protein Era [Chloroherpeton thalassium ATCC 35110] gi|193087312|gb|ACF12587.1| GTP-binding protein Era [Chloroherpeton thalassium ATCC 35110] Length = 321 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 50/191 (26%), Positives = 83/191 (43%), Gaps = 27/191 (14%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRETDD 282 ILG NAGKS+L N L + ++IVT P TTR VL I D +V + DT GI + Sbjct: 29 ILGEPNAGKSTLLNVLLGEKISIVTPKPQTTRKRVLGIFTDKSCQIV-LLDTPGIMKPKY 87 Query: 283 IVEKEGIKRTFLEVENADLILLLKEI--------------------NSKKEISFPKN-ID 321 + + + VE++D+++LL ++ N+KK + N +D Sbjct: 88 KLHEAMLDLADKSVEDSDVLVLLLDVEKYQKGKAELKADLAFQRIANTKKPVILVLNKVD 147 Query: 322 FIFIGTKSDLYSTYTEEYDHL----ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377 I +L + ++ EY +S+ G + E + + L P I S Sbjct: 148 LITKDASLELIAKFSSEYPFREIVPLSALKGYNIREFLKAVVPYLPASPPLYPPDILSTA 207 Query: 378 RHLYHLSQTVR 388 + +S+ +R Sbjct: 208 PERFFVSEIIR 218 >gi|16125990|ref|NP_420554.1| GTP-binding protein HflX [Caulobacter crescentus CB15] gi|13423166|gb|AAK23722.1| GTP-binding protein HflX [Caulobacter crescentus CB15] Length = 427 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 41/171 (23%), Positives = 83/171 (48%), Gaps = 32/171 (18%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD--VLTIDLDLEGYLVKISDTAGIRE 279 + ++G++NAGKS+LFN L + +V + D+ T D + T+ L +G +SDT G Sbjct: 197 VALVGYTNAGKSTLFNRLTEAEV-LAKDMLFATLDPTLRTVKLP-DGRPAIMSDTVGF-- 252 Query: 280 TDDIVEK--EGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF--IGTKSDLYSTY 335 D+ + E + T EV+ AD++L ++++ + + ++++ + +G D T Sbjct: 253 ISDLPHELVEAFRATLEEVQEADVVLHVRDVANPDSEAQARDVETVLAELGVTLDEGKTV 312 Query: 336 TEEYDHL----------------------ISSFTGEGLEELINKIKSILSN 364 E ++ + +S+ TGEG E L+ +I ++ + Sbjct: 313 VEVWNKVDLLSEDDREIVEGQARRNDASAVSAVTGEGCEALLRRIAGLIDD 363 >gi|330800863|ref|XP_003288452.1| hypothetical protein DICPUDRAFT_34085 [Dictyostelium purpureum] gi|325081511|gb|EGC35024.1| hypothetical protein DICPUDRAFT_34085 [Dictyostelium purpureum] Length = 451 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 2/87 (2%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT--AGIR 278 ++ LG SNAGKSSL NA+ +D+A V+ PG T+ + L + YLV + A + Sbjct: 214 QVAFLGKSNAGKSSLLNAILNRDMAYVSKKPGCTKSINFYQLWEKIYLVDLPGYGFAKVS 273 Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL 305 + V E I L N I LL Sbjct: 274 KKKSSVWGEAISEYLLTTPNLFKIFLL 300 >gi|291276313|ref|YP_003516085.1| ferrous iron transport protein [Helicobacter mustelae 12198] gi|290963507|emb|CBG39338.1| ferrous iron transport protein [Helicobacter mustelae 12198] Length = 719 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 2/100 (2%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 IV++G N GK+SL N L+ + V + G T + L E L +I D GI + Sbjct: 6 IVLVGQPNVGKTSLINYLSGAHLK-VGNFTGVTIEKAETSLIYENTLFEIIDLPGIYALE 64 Query: 282 DIVEKEGIKRTFLEVENADLIL-LLKEINSKKEISFPKNI 320 D +E + + FLE ++ DLIL +L N ++ ++ I Sbjct: 65 DFTMEEKVTKDFLENQHYDLILNVLDSTNLERNLTLSTQI 104 >gi|24114254|ref|NP_708764.1| hypothetical protein SF2990 [Shigella flexneri 2a str. 301] gi|12643221|gb|AAK00473.1| unknown [Shigella flexneri 2a] gi|24053407|gb|AAN44471.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301] Length = 290 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 38/108 (35%), Positives = 56/108 (51%), Gaps = 4/108 (3%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L +S HI + L ++ + I I+G S AGKSSL NAL + +V V+D+ TR+V Sbjct: 17 LPYSLSRHILE-HLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQ 75 Query: 259 TIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305 L G+ + I+D + E+ D E E + R L DL+L L Sbjct: 76 RFRLSGHGHSMVITDLPEVGESRDRDAEYEALYRDIL--PELDLVLWL 121 >gi|251788133|ref|YP_003002854.1| putative GTPase HflX [Dickeya zeae Ech1591] gi|247536754|gb|ACT05375.1| GTP-binding proten HflX [Dickeya zeae Ech1591] Length = 433 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 57/217 (26%), Positives = 89/217 (41%), Gaps = 37/217 (17%) Query: 194 NDILFLKNDISSHIS----------QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 D L+N IS +S QG+ + ++G++NAGKS+LFN + D Sbjct: 162 TDRRLLRNRISQILSRLERVEKQREQGRRARTRAEVPTVSLVGYTNAGKSTLFNRMTSAD 221 Query: 244 VAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAG-IRE-TDDIVEKEGIKRTFLEVENAD 300 V + T L ID+D G V ++DT G IR+ D+V K T E A Sbjct: 222 VYAADQLFATLDPTLRRIDVDDVGDTV-LADTVGFIRDLPHDLV--AAFKATLQETREAT 278 Query: 301 LILLL---------KEINSKKEISF---PKNIDFIFIGTKSDLYSTYTEEYDH------- 341 L+L + + I++ E+ +I F+ + K D T D Sbjct: 279 LLLHVVDASDTRVDENIDAVNEVLTEIEADDIPFLLVMNKIDQLENITPRIDRDEENRPV 338 Query: 342 --LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376 +S+ TGEG+ L+ + LS + +P H Sbjct: 339 RVWLSAQTGEGIPLLLQALTERLSGEIAHYSLHLPPH 375 >gi|221234757|ref|YP_002517193.1| GTP-binding protein hflX [Caulobacter crescentus NA1000] gi|220963929|gb|ACL95285.1| GTP-binding protein hflX [Caulobacter crescentus NA1000] Length = 446 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 41/171 (23%), Positives = 83/171 (48%), Gaps = 32/171 (18%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD--VLTIDLDLEGYLVKISDTAGIRE 279 + ++G++NAGKS+LFN L + +V + D+ T D + T+ L +G +SDT G Sbjct: 216 VALVGYTNAGKSTLFNRLTEAEV-LAKDMLFATLDPTLRTVKLP-DGRPAIMSDTVGF-- 271 Query: 280 TDDIVEK--EGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF--IGTKSDLYSTY 335 D+ + E + T EV+ AD++L ++++ + + ++++ + +G D T Sbjct: 272 ISDLPHELVEAFRATLEEVQEADVVLHVRDVANPDSEAQARDVETVLAELGVTLDEGKTV 331 Query: 336 TEEYDHL----------------------ISSFTGEGLEELINKIKSILSN 364 E ++ + +S+ TGEG E L+ +I ++ + Sbjct: 332 VEVWNKVDLLSEDDREIVEGQARRNDASAVSAVTGEGCEALLRRIAGLIDD 382 >gi|254471030|ref|ZP_05084433.1| ferrous iron transport protein B [Pseudovibrio sp. JE062] gi|211960172|gb|EEA95369.1| ferrous iron transport protein B [Pseudovibrio sp. JE062] Length = 607 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 38/147 (25%), Positives = 69/147 (46%), Gaps = 4/147 (2%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I ++G N GKS LFN + A V + PG T +V+ + L+G V+ D GI Sbjct: 14 RIALIGQPNTGKSMLFNRITNAR-ASVGNWPGITVNVMRARVPLDGRKVEYVDLPGIYNL 72 Query: 281 DDIVEKEGIKRTFLEVENADL-ILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY 339 + E E + FL DL I+++ +++I P + +G + + +E Sbjct: 73 EGGSEDEAVVNRFLTKFPVDLVIIVINAAQIERQILMPLQVK--ALGLPAVVMLNMCDEA 130 Query: 340 DHLISSFTGEGLEELINKIKSILSNKF 366 L +F E L++ + +++S K+ Sbjct: 131 HKLGITFDLEKLQDSLKMPVALISAKY 157 >gi|296415306|ref|XP_002837331.1| hypothetical protein [Tuber melanosporum Mel28] gi|295633195|emb|CAZ81522.1| unnamed protein product [Tuber melanosporum] Length = 337 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 54/120 (45%), Gaps = 10/120 (8%) Query: 188 SSKEVLNDILFLKNDISSHI-SQGKLGEI-IRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 SS ++ + F H+ S K EI ++ LG SN GKSSL NAL K +A Sbjct: 64 SSAQLGTAVKFFTRRQPRHMWSASKFKEICFGTAPEVAFLGRSNVGKSSLLNALLDKPLA 123 Query: 246 IVTDIPGTTR--------DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 + PG TR + + LD+ GY D G++ + + ++R FL V+ Sbjct: 124 HTSSKPGRTRLLNAYSIANGRGVLLDMPGYGHNSRDEWGVQVMKYLQRRRELRRAFLLVD 183 >gi|218530504|ref|YP_002421320.1| GTP-binding protein Era [Methylobacterium chloromethanicum CM4] gi|240138863|ref|YP_002963338.1| GTP-binding protein [Methylobacterium extorquens AM1] gi|218522807|gb|ACK83392.1| GTP-binding protein Era [Methylobacterium chloromethanicum CM4] gi|240008835|gb|ACS40061.1| GTP-binding protein [Methylobacterium extorquens AM1] Length = 326 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 52/191 (27%), Positives = 86/191 (45%), Gaps = 32/191 (16%) Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG- 266 +QG+ E R G+ + ++G NAGKS+L NAL V+IV+ TTR L + +EG Sbjct: 23 AQGQPREETRAGF-VALIGVPNAGKSTLLNALVGAKVSIVSRKVQTTR-ALVRGIVMEGN 80 Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK-------------- 312 + + DT GI +++ + + +AD I LL I+++K Sbjct: 81 AQIVLVDTPGIFAPKRRLDRAMVHSAWSGAADADAICLL--IDARKGVDEEVETILRRLP 138 Query: 313 EISFPK-----NIDFI----FIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363 E+ PK ID I + + L + E LIS+ G+G+ +L + L+ Sbjct: 139 EVKRPKILILNKIDLIARERLLELVAKLNAMVPFEDTFLISALKGDGIADL----RKALA 194 Query: 364 NKFKKLPFSIP 374 + P+ P Sbjct: 195 ARMPPSPWLYP 205 >gi|11497862|ref|NP_069084.1| iron (II) transporter (feoB-1) [Archaeoglobus fulgidus DSM 4304] gi|2650395|gb|AAB90987.1| iron (II) transporter (feoB-1) [Archaeoglobus fulgidus DSM 4304] Length = 639 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 9/84 (10%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-DLEGYLVKISDTAGIRE 279 K+ ++G+ N GKS+LF AL K A +++ PGTT D+ L DLE I DT G+ Sbjct: 16 KVALVGNPNVGKSALFYALTGK-YATISNYPGTTVDIAVAKLGDLE-----IIDTPGMHS 69 Query: 280 TDDIVEKEGIKRTFLEVENADLIL 303 + +E + R L E ADL++ Sbjct: 70 LVPVTGEEEVARKLL--EEADLVV 91 >gi|168335124|ref|ZP_02693232.1| GTP-binding protein Era [Epulopiscium sp. 'N.t. morphotype B'] Length = 303 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 1/95 (1%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 ++G+ I I+G +N GKS+L N L + +AI+++ P TTR + L + DT G Sbjct: 6 KSGF-ISIIGRANVGKSTLMNRLVGEKIAIMSNKPQTTRHQVRTILTTNDFQAVFIDTPG 64 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311 I + + K +K + D+IL L E +++ Sbjct: 65 IHTPNTELGKFMVKAAHTTLNEVDIILFLIETDTR 99 >gi|42520585|ref|NP_966500.1| GTP-binding protein Era [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410324|gb|AAS14434.1| GTP-binding protein Era [Wolbachia endosymbiont of Drosophila melanogaster] Length = 294 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 73/165 (44%), Gaps = 23/165 (13%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I G NAGKS+L N++ K +AIVT TTR + + +D+ GI + Sbjct: 9 VTIAGLPNAGKSTLINSIIGKKIAIVTPKVQTTRTQIRGVATCNNTQIVFTDSPGIFSAE 68 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEI-NSKKEISFPKNI---------DFIFIGTKSDL 331 +EK +K + V+++D+ L L ++ N K I K I I + K+DL Sbjct: 69 TKLEKALVKSAWSAVKDSDITLSLVDVSNYLKNIERIKTIFMRLQRTKGRCILVINKTDL 128 Query: 332 YST-------------YTEEYDHLISSFTGEGLEELINKIKSILS 363 Y E +IS+ +GL +L+N + + S Sbjct: 129 VKRPELKMAHEHLNLLYKFEKVFMISALKNDGLSDLMNYLSEVAS 173 >gi|194014979|ref|ZP_03053596.1| GTP-binding protein HflX [Bacillus pumilus ATCC 7061] gi|194014005|gb|EDW23570.1| GTP-binding protein HflX [Bacillus pumilus ATCC 7061] Length = 420 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 34/89 (38%), Positives = 49/89 (55%), Gaps = 3/89 (3%) Query: 217 RNG-YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDT 274 +NG ++I I+G++NAGKS+LFN L D + D+ T D +T + L GY V ISDT Sbjct: 196 KNGVFQIAIVGYTNAGKSTLFNQLTDAD-SHEEDLLFATLDPMTRKMTLASGYSVLISDT 254 Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLIL 303 G + + T EV+ AD +L Sbjct: 255 VGFIQDLPTTLIAAFRSTLEEVKEADYLL 283 >gi|227504875|ref|ZP_03934924.1| GTP-binding protein HflX [Corynebacterium striatum ATCC 6940] gi|227198566|gb|EEI78614.1| GTP-binding protein HflX [Corynebacterium striatum ATCC 6940] Length = 486 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 56/200 (28%), Positives = 90/200 (45%), Gaps = 30/200 (15%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRE 279 +I I G++NAGKSSL NA+ V +V D T D T +L +G V +DT G Sbjct: 259 QIAIAGYTNAGKSSLINAMTGAGV-LVEDALFATLDPTTRRAELADGRQVVFTDTVGFVR 317 Query: 280 TDDIVEKEGIKRTFLEVENADLIL---------LLKEINSKKEISF----------PKNI 320 E K T EV AD++L +K+I + ++ + P I Sbjct: 318 HLPTQLVEAFKSTLEEVLAADIMLHVVDGSDPFPIKQIEAVNKVIYDIVKETGEQAPPEI 377 Query: 321 DFIFIGTKSD--LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374 I ++D + + DH +S+ TGEG++EL ++I+ L+++ + +P Sbjct: 378 IVINKIDQADPLVLAEIRHVLDHENVVYVSAHTGEGIDELTSRIELFLNSRDSHVRLLVP 437 Query: 375 SHKRHL---YHLSQTVRYLE 391 + + H TVRY E Sbjct: 438 FTRGDVVSRVHAEGTVRYEE 457 >gi|329850745|ref|ZP_08265590.1| GTP-binding protein Era [Asticcacaulis biprosthecum C19] gi|328841060|gb|EGF90631.1| GTP-binding protein Era [Asticcacaulis biprosthecum C19] Length = 317 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 86/201 (42%), Gaps = 47/201 (23%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTIDLDLEGYLVKISDTA 275 R G+ + I+G NAGKS+L N L V+IVT TTR V I LD E ++ + DT Sbjct: 7 RCGF-VAIIGAPNAGKSTLVNQLVGTKVSIVTQKVQTTRFPVRGIALDEEVQMI-LVDTP 64 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILL------------------------------- 304 GI + +++ + + E+AD ++L Sbjct: 65 GIFKPRRRLDRAMVASAWGGAEDADCVVLLVDAAAQLAVKGGGEVKATGADHKAVEDVEM 124 Query: 305 ----LKEINSKKEISFPKNIDFI----FIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356 LK N K ++ K ID + + DLY+T E +IS+ G G+++L Sbjct: 125 IVEGLKSANRKAILALNK-IDLMKSENLLAIADDLYNTGIVEDVLMISAEKGHGVKDL-- 181 Query: 357 KIKSILSNKFKKLPFSIPSHK 377 K +L+ + + P+ P + Sbjct: 182 --KKLLAKRMPQSPWLYPEDQ 200 >gi|22298991|ref|NP_682238.1| ferrous iron transport protein B [Thermosynechococcus elongatus BP-1] gi|22295173|dbj|BAC09000.1| ferrous iron transport protein B [Thermosynechococcus elongatus BP-1] Length = 596 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 1/85 (1%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 I +LG N GKS+ FN +A A V + PG T D+ ++ L G VK+ D GI + Sbjct: 5 TIALLGLPNTGKSTFFNRIAAAR-ARVGNWPGITVDLAEAEMSLNGERVKLVDLPGIYDL 63 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 E I R F + L+L++ Sbjct: 64 AGTAADETIVREFFQRVPVRLVLVI 88 >gi|149277443|ref|ZP_01883584.1| GTP-binding protein [Pedobacter sp. BAL39] gi|149231676|gb|EDM37054.1| GTP-binding protein [Pedobacter sp. BAL39] Length = 292 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 32/95 (33%), Positives = 52/95 (54%), Gaps = 10/95 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+L NAL + ++I+T TTR + ++ E Y + SDT GI Sbjct: 8 VSIIGKPNVGKSTLMNALIGEKLSIITPKAQTTRHRILGIVNEEEYQIVFSDTPGI---- 63 Query: 282 DIVEKEGIKRTFL-----EVENADLILLLKEINSK 311 I K G++ + + + +ADLIL + +IN + Sbjct: 64 -IKPKYGLQDSMMTSVKGALTDADLILFVTDINEQ 97 >gi|310642491|ref|YP_003947249.1| gtpase with domain [Paenibacillus polymyxa SC2] gi|309247441|gb|ADO57008.1| Predicted GTPase with uncharacterized domain [Paenibacillus polymyxa SC2] Length = 417 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 36/91 (39%), Positives = 53/91 (58%), Gaps = 6/91 (6%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTA 275 N IV+LG NAGKSS+ N L + A+V+ I GTT D + ++L G +V + DTA Sbjct: 10 NRPHIVLLGRRNAGKSSILNTLTGQPAAVVSPIGGTTTDPVFKPMELLPAGPIVLV-DTA 68 Query: 276 GIRETDDIVEKEGIKRTFLEVENA-DLILLL 305 G+ + +I E + LE+ N+ DL LL+ Sbjct: 69 GLDDEGEIGELR--RNKTLEILNSTDLALLV 97 >gi|253576866|ref|ZP_04854191.1| GTPase [Paenibacillus sp. oral taxon 786 str. D14] gi|251843733|gb|EES71756.1| GTPase [Paenibacillus sp. oral taxon 786 str. D14] Length = 420 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 32/86 (37%), Positives = 52/86 (60%), Gaps = 4/86 (4%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTAGIRE 279 I + G +N GKSS+ NAL +++A+V+ + GTT D + ++L G +V I DTAG+ + Sbjct: 14 IAVFGRTNVGKSSVVNALTGQEIAVVSPVRGTTTDPVYKAMELLPLGPVVLI-DTAGLDD 72 Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305 ++ E+ K L + ADL LL+ Sbjct: 73 EGELGERRKQKTREL-IHRADLALLV 97 >gi|326384755|ref|ZP_08206432.1| GTP-binding protein Der [Gordonia neofelifaecis NRRL B-59395] gi|326196563|gb|EGD53760.1| GTP-binding protein Der [Gordonia neofelifaecis NRRL B-59395] Length = 479 Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 37/58 (63%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 ++ ++G N GKSSL N LA ++ A+V ++ GTT D + ++L G + DTAG+R Sbjct: 218 RVALVGKPNVGKSSLLNKLAGEERAVVDNVAGTTVDPVDEMIELGGKPWQFVDTAGLR 275 Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 32/55 (58%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 + I+G N GKS+L N + + A+V D+PG TRD ++ + G ++DT G Sbjct: 46 LAIVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYKAEWTGKQFMVTDTGG 100 >gi|325115126|emb|CBZ50682.1| hypothetical protein NCLIV_011480 [Neospora caninum Liverpool] Length = 631 Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 5/89 (5%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS L N L ++V+ GTTRD + ++ + + ++ DTAGIR Sbjct: 396 VAIVGRPNVGKSQLLNRLLGVSRSLVSPEAGTTRDAVDELVERDSVVYRLVDTAGIRRAR 455 Query: 282 DIVEKEG-----IKRTFLEVENADLILLL 305 + ++G +KR + D+ LL+ Sbjct: 456 VVKAQQGTEFVMVKRAERALTRCDVCLLV 484 Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 31/61 (50%), Gaps = 4/61 (6%) Query: 221 KIVILGHSNAGKSSLFNALAKKD----VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 +I +LG N GKSSLFN L K+ AIV D GTTRD G + DT G Sbjct: 167 RICLLGRPNVGKSSLFNKLKDKEDLAADAIVRDEDGTTRDRHYAFSVWRGCPFVVVDTGG 226 Query: 277 I 277 + Sbjct: 227 L 227 >gi|300744003|ref|ZP_07073023.1| GTP-binding protein [Rothia dentocariosa M567] gi|300380364|gb|EFJ76927.1| GTP-binding protein [Rothia dentocariosa M567] Length = 593 Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust. Identities = 50/176 (28%), Positives = 76/176 (43%), Gaps = 27/176 (15%) Query: 222 IVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 + I G++NAGKSSL N L V A+ + T R T D G +SDT G Sbjct: 350 VAIAGYTNAGKSSLLNRLTDAGVLVENALFATLDPTVRKAQTPD----GIGYTLSDTVGF 405 Query: 278 RETDDIVEKEGIKRTFLEVENADLILLL---------KEINSKKEISF---PKNIDFIFI 325 + E + T EV +AD+IL + ++ + +E+ + I I + Sbjct: 406 VRSLPTQLVEAFRSTLEEVADADVILHVVDASHPDPEGQVRAVREVIADLDARRIPEIIV 465 Query: 326 GTKSD------LYSTYTEEYDHLI-SSFTGEGLEELINKIKSILSNKFKKLPFSIP 374 K+D L E +H+I S+ TGEG+ EL KI + ++ IP Sbjct: 466 LNKADAADPFILERMRQREPNHVIVSARTGEGIGELKQKIADTIPRPSLEVKLLIP 521 >gi|296115042|ref|ZP_06833684.1| GTP-binding protein Era [Gluconacetobacter hansenii ATCC 23769] gi|295978379|gb|EFG85115.1| GTP-binding protein Era [Gluconacetobacter hansenii ATCC 23769] Length = 302 Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust. Identities = 43/168 (25%), Positives = 83/168 (49%), Gaps = 24/168 (14%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTIDLDLEGYLVKISDTA 275 R G+ + I+G NAGKS+L N +A ++IV+ TTR VL I + ++ + DT Sbjct: 10 RCGF-VAIVGAPNAGKSTLLNRMAGTKLSIVSPKAQTTRFRVLGILMRNHAQMLLV-DTP 67 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK-----KEIS---FPKNIDFIFIGT 327 GI ++++ + + E+AD+ LL+ + + +EI +N + Sbjct: 68 GIFRPRRMLDRAMVAAAWTGAEDADITLLIIDARAGLTEAVREIVSQLAQRNRRVWLVLN 127 Query: 328 KSDLYST-------------YTEEYDHLISSFTGEGLEELINKIKSIL 362 K+DL T E+ +IS+ +G+G+++L++++ + L Sbjct: 128 KTDLMRRDALLPLTAELSGLLTVEHVFMISARSGQGVDDLMDRMAAEL 175 >gi|253583497|ref|ZP_04860695.1| GTP-binding protein [Fusobacterium varium ATCC 27725] gi|251834069|gb|EES62632.1| GTP-binding protein [Fusobacterium varium ATCC 27725] Length = 414 Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust. Identities = 33/77 (42%), Positives = 47/77 (61%), Gaps = 7/77 (9%) Query: 210 GKLGEIIR-NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--G 266 GK+ E R N I I G +NAGKSSL N + + +++V+D+ GTT D + ++L G Sbjct: 9 GKMTETPRGNRVHIAIFGRTNAGKSSLINRITNQKISLVSDVKGTTTDPVYKAMELLPIG 68 Query: 267 YLVKISDTAGIRETDDI 283 +V I DTAGI DD+ Sbjct: 69 PVVFI-DTAGI---DDV 81 >gi|126725455|ref|ZP_01741297.1| GTP-binding protein EngA [Rhodobacterales bacterium HTCC2150] gi|126704659|gb|EBA03750.1| GTP-binding protein EngA [Rhodobacterales bacterium HTCC2150] Length = 469 Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 39/66 (59%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I ++G NAGKS+L N + ++ + G TRD +++ D E V++ DTAG+R+ Sbjct: 183 QIAVVGRPNAGKSTLINQILGEERLLTGPEAGITRDAISLAFDWEDTPVRMFDTAGMRKK 242 Query: 281 DDIVEK 286 + +K Sbjct: 243 AKVQDK 248 Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust. Identities = 23/52 (44%), Positives = 29/52 (55%) Query: 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282 GKS+LFN L K +A+V D PG TRD+ L + DTAG+ E D Sbjct: 2 GKSTLFNRLVGKRLALVDDQPGVTRDLREGAARLGDIKFTVVDTAGLEEATD 53 >gi|86610185|ref|YP_478947.1| GTP-binding domain-containing protein [Synechococcus sp. JA-2-3B'a(2-13)] gi|86558727|gb|ABD03684.1| GTP-binding domain protein [Synechococcus sp. JA-2-3B'a(2-13)] Length = 484 Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust. Identities = 47/148 (31%), Positives = 68/148 (45%), Gaps = 25/148 (16%) Query: 164 KLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRN----G 219 KLT R+ ++ADL ED K L+NDIS + KL EI + Sbjct: 69 KLT--RNQVQADL-----EDADRLIQK--------LQNDISRRALRAKLQEINQRLNQEE 113 Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY--LVKISDTAGI 277 +V+ G S+AGK+SL NAL + V GTT+ LEG+ + ++DT G+ Sbjct: 114 LHLVVFGTSSAGKTSLINALMGRPVGETAPTLGTTQQGSIHTYQLEGWNGPISLTDTPGL 173 Query: 278 RETDDIVEKEGIKRTFLEVENADLILLL 305 E E R + ADL++L+ Sbjct: 174 LTIGGAGEAEA--RAL--AQKADLLILV 197 >gi|37999700|sp|Q8FTK5|DER_COREF RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA Length = 528 Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 39/65 (60%) Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274 I+ ++ ++G N GKSSL N A ++ ++V ++ GTT D + + L+ + K DT Sbjct: 258 IVEGPRRVALVGKPNVGKSSLLNKFAGEERSVVDNVAGTTVDPVDSIIQLDQKMWKFIDT 317 Query: 275 AGIRE 279 AG+R+ Sbjct: 318 AGLRK 322 Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 40/84 (47%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+L N + A+V D PG TRD ++ D G + DT G Sbjct: 92 VAIVGRPNVGKSTLVNRFIGRREAVVEDFPGVTRDRISYLSDWGGQRFWVQDTGGWDPNV 151 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + L + +AD+I+ + Sbjct: 152 KGIHASIAHQAELAMASADVIVFV 175 >gi|254168430|ref|ZP_04875275.1| GTPase, putative [Aciduliprofundum boonei T469] gi|289595771|ref|YP_003482467.1| small GTP-binding protein [Aciduliprofundum boonei T469] gi|197622711|gb|EDY35281.1| GTPase, putative [Aciduliprofundum boonei T469] gi|289533558|gb|ADD07905.1| small GTP-binding protein [Aciduliprofundum boonei T469] Length = 317 Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 79/156 (50%), Gaps = 28/156 (17%) Query: 222 IVILGHSNAGKSSLFNAL--AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR- 278 +VI G+ N GKS L + + AK ++A P TT+ ++ +++ G V+I DT G+ Sbjct: 165 VVIAGYPNVGKSELVSKMSTAKPEIA---SYPFTTKGIVVGHMEIRGRRVQIVDTPGLLD 221 Query: 279 ---ETDDIVEKEGI-KRTFLEVENADLILLL------------KEINSKKEISFPKNIDF 322 E + +EKE I +L AD+I+ L +++ KEI +I Sbjct: 222 RPLEKRNRIEKEAILALKYL----ADVIVFLLDPSETCGYSMDEQLKLLKEIKKDFDIPI 277 Query: 323 IFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKI 358 + + K DL T ++ IS+ TGEGLE+L+ ++ Sbjct: 278 LEVENKVDLLCTDSQRIK--ISAKTGEGLEKLMGEV 311 >gi|297172694|gb|ADI23661.1| GTPase [uncultured Gemmatimonadales bacterium HF4000_15H13] Length = 317 Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust. Identities = 43/179 (24%), Positives = 77/179 (43%), Gaps = 26/179 (14%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R GY + ++G NAGKS+L N L + ++IVT TT +T L + DT G Sbjct: 18 RAGY-VTLVGRPNAGKSTLLNRLIGEHLSIVTAKAQTTWQRVTGILTTGSDQLIFLDTPG 76 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL-------------KEINSKKEISFPKNIDFI 323 + E D+ ++ + + AD++LL+ + +++ +E P ++ Sbjct: 77 LLEVHDLFQRAMLGAALQALSEADVVLLVIDCTRKPSPQETARIVHAVEEAQAPIHVALN 136 Query: 324 FIGTKSDLYSTYTEEY--------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374 I + E + H +S+ G G++EL+ ++S L PF P Sbjct: 137 KIDEADEQQIEAWERWLAGHVPGALHQVSAADGSGVDELLEAVRSALPEG----PFLYP 191 >gi|25028117|ref|NP_738171.1| GTP-binding protein EngA [Corynebacterium efficiens YS-314] gi|259507174|ref|ZP_05750074.1| ribosome-associated GTPase EngA [Corynebacterium efficiens YS-314] gi|23493401|dbj|BAC18371.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] gi|259165255|gb|EEW49809.1| ribosome-associated GTPase EngA [Corynebacterium efficiens YS-314] Length = 552 Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 39/65 (60%) Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274 I+ ++ ++G N GKSSL N A ++ ++V ++ GTT D + + L+ + K DT Sbjct: 282 IVEGPRRVALVGKPNVGKSSLLNKFAGEERSVVDNVAGTTVDPVDSIIQLDQKMWKFIDT 341 Query: 275 AGIRE 279 AG+R+ Sbjct: 342 AGLRK 346 Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 40/84 (47%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+L N + A+V D PG TRD ++ D G + DT G Sbjct: 116 VAIVGRPNVGKSTLVNRFIGRREAVVEDFPGVTRDRISYLSDWGGQRFWVQDTGGWDPNV 175 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + L + +AD+I+ + Sbjct: 176 KGIHASIAHQAELAMASADVIVFV 199 >gi|225848905|ref|YP_002729069.1| GTP-binding protein [Sulfurihydrogenibium azorense Az-Fu1] gi|225643797|gb|ACN98847.1| GTP-binding protein [Sulfurihydrogenibium azorense Az-Fu1] Length = 259 Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust. Identities = 27/57 (47%), Positives = 33/57 (57%), Gaps = 3/57 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 K+ +LG+ N GKSS+ NAL KK VA + PG T I LD YL+ DT GI Sbjct: 109 KVGVLGYPNVGKSSIINALKKKKVATTSPKPGMTVGEKLIKLDENIYLI---DTPGI 162 >gi|187777431|ref|ZP_02993904.1| hypothetical protein CLOSPO_00998 [Clostridium sporogenes ATCC 15579] gi|187774359|gb|EDU38161.1| hypothetical protein CLOSPO_00998 [Clostridium sporogenes ATCC 15579] Length = 397 Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 16/125 (12%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276 N I +G +N+GKSSL NA+ +D++IV+ I GTT D ++ ++L V +DTAG Sbjct: 8 NRIHITFIGKTNSGKSSLMNAIIGQDISIVSSIEGTTTDPVSKAMELIPLGPVLFTDTAG 67 Query: 277 IRETDDI--VEKEGIKRTFLEV---------ENADLILLLKEINSKKEISFPKNIDFIFI 325 + + ++ + E T L+ E+ D+ L K IN K+ +NI +I + Sbjct: 68 LEDNTELGKIRIEKTLNTLLKTDFAVYVMSAEDIDINLYEKSINRFKQ----QNIPYITV 123 Query: 326 GTKSD 330 K D Sbjct: 124 VNKID 128 >gi|284053849|ref|ZP_06384059.1| GTP-binding protein Era [Arthrospira platensis str. Paraca] Length = 228 Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust. Identities = 44/182 (24%), Positives = 72/182 (39%), Gaps = 29/182 (15%) Query: 219 GYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 GYK + I+G N GKS+L N L + +AI + I TTR+ L L + + DT Sbjct: 15 GYKSGFVGIIGRPNVGKSTLMNKLVGQKIAITSPIAQTTRNRLRGILTTDSAQIIFVDTP 74 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKE------------INSKKEISFPKNIDFI 323 GI + + K +K L + + D+++ + + ++ FP + Sbjct: 75 GIHKPHHQLGKVLVKNAKLAIASVDVLVFVVDASVMSGGGDRYIVDLLTHTKFPVILGLN 134 Query: 324 FIGTKSDLYSTYTEEYDHL----------ISSFTGEGLEELINKIKSILSNKFKKLPFSI 373 + D Y + Y S+ TG G+E L N +L N P+ Sbjct: 135 KWDLQPDQYEAIDQSYQQFAEAHKWQMVKFSAVTGAGVETLQN----LLINSLDPGPYYY 190 Query: 374 PS 375 P Sbjct: 191 PP 192 >gi|258593725|emb|CBE70066.1| GTP-binding protein (era) [NC10 bacterium 'Dutch sediment'] Length = 300 Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 1/91 (1%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 ++G+ + I+G N GKS+L N L + V+IV+ P TTR + L G + DT G Sbjct: 7 KSGF-VAIIGRPNVGKSTLMNRLLGQKVSIVSPRPQTTRTKIMGIRSLPGAQLIFLDTPG 65 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKE 307 I ++ + +K +E ADLIL + E Sbjct: 66 IDKSGGYFHRLMVKTATNSLEGADLILWIVE 96 >gi|251772615|gb|EES53180.1| GTP-binding protein (Era) [Leptospirillum ferrodiazotrophum] Length = 335 Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust. Identities = 31/104 (29%), Positives = 58/104 (55%), Gaps = 3/104 (2%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-IDLDLEGYLVKISDTAGIRET 280 + ++G NAGKS+L NAL + V+ V+ P TTR ++ I + G + + DT G ++ Sbjct: 34 VAVVGLPNAGKSTLVNALVGEKVSAVSATPQTTRTLIRGIRTEERGQAIFL-DTPGFHQS 92 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKK-EISFPKNIDFI 323 ++ ++ +R + A ++L + +I SKK + F + +D I Sbjct: 93 GPLLNQQMGERLSAALAEAHVVLWVVDITSKKRDRDFARFLDLI 136 >gi|56478977|ref|YP_160566.1| GTP-binding protein [Aromatoleum aromaticum EbN1] gi|56315020|emb|CAI09665.1| GTP-binding protein [Aromatoleum aromaticum EbN1] Length = 304 Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 35/57 (61%), Gaps = 3/57 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 +I+I+G N GKS+L NAL K+ VA V D P T+ T DL G + I+DT G+ Sbjct: 118 RIMIMGIPNVGKSTLMNALLKRRVAKVGDEPAVTKSQQTFDL---GSHMTITDTPGL 171 >gi|170587605|ref|XP_001898566.1| hypothetical protein [Brugia malayi] gi|158594041|gb|EDP32632.1| conserved hypothetical protein [Brugia malayi] Length = 579 Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 3/62 (4%) Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 I+ ++ ++G+ N GKSS N+L +K V V IPG TR V ++LD +++ D+ Sbjct: 261 IKTSIRVGVVGYPNVGKSSFINSLKRKRVCDVGAIPGITRQVQEVNLDKH---IRLLDSP 317 Query: 276 GI 277 G+ Sbjct: 318 GV 319 >gi|159903869|ref|YP_001551213.1| GTP-binding protein Era-like protein [Prochlorococcus marinus str. MIT 9211] gi|159889045|gb|ABX09259.1| GTP-binding protein ERA-like protein [Prochlorococcus marinus str. MIT 9211] Length = 314 Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust. Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 1/94 (1%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273 +I R+G+ + ++G N GKS+L N L + V+I + + TTR+ L L + + D Sbjct: 9 KIFRSGF-VALIGRPNVGKSTLVNELVGQKVSITSPVAQTTRNRLRAILTTQNAQLVFVD 67 Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307 T GI + ++ + ++ + D ILL+ E Sbjct: 68 TPGIHKPHHLLGQRLVQSARRSIGEVDTILLIFE 101 >gi|172057814|ref|YP_001814274.1| GTP-binding protein EngA [Exiguobacterium sibiricum 255-15] gi|171990335|gb|ACB61257.1| small GTP-binding protein [Exiguobacterium sibiricum 255-15] Length = 436 Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K ++G N GKSS+ N++ ++ IV+ I GTTRD + + I DTAG+R+ Sbjct: 177 KFALVGRPNVGKSSMTNSILGEERVIVSSIAGTTRDAIDTPFSRDEQEYVIIDTAGMRKR 236 Query: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 + E+ + R +E AD++ ++ Sbjct: 237 GKVYESTERFSVMRAQKAIERADVVCVV 264 Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust. Identities = 41/163 (25%), Positives = 75/163 (46%), Gaps = 21/163 (12%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS++FN + V+IV D PG TRD + + + DT GI D Sbjct: 6 VAIVGRPNIGKSTIFNRVIGDRVSIVEDKPGVTRDRIYGTGEWLNRHFHLIDTGGIEVGD 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS----------FPKNIDFIFIGTKSD- 330 + + + + L ++ AD+I+ + +N ++ I+ F N + K D Sbjct: 66 EPLLQMMRHQAELAIDEADVIIFM--VNGREGITAADEEVANMLFRSNKPVVVAVNKVDN 123 Query: 331 ------LYSTYTEEYDHL--ISSFTGEGLEELINKIKSILSNK 365 +Y Y+ + L IS G GL ++++++ + +K Sbjct: 124 FEMRDLMYEFYSLGFGDLYPISGTHGLGLGDMLDRVLELAPDK 166 >gi|312865180|ref|ZP_07725408.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus downei F0415] gi|311099291|gb|EFQ57507.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus downei F0415] Length = 283 Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust. Identities = 31/80 (38%), Positives = 45/80 (56%), Gaps = 7/80 (8%) Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DV 257 KN +S + + + I + G + +I+G NAGKS+L N LA K +A+V + PG T+ Sbjct: 102 KNLMSDKLERLREKGIQKEGLRTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQW 161 Query: 258 LTIDLDLEGYLVKISDTAGI 277 L + DLE I DT GI Sbjct: 162 LKSNKDLE-----ILDTPGI 176 >gi|281355288|ref|ZP_06241782.1| GTP-binding proten HflX [Victivallis vadensis ATCC BAA-548] gi|281318168|gb|EFB02188.1| GTP-binding proten HflX [Victivallis vadensis ATCC BAA-548] Length = 449 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 55/194 (28%), Positives = 90/194 (46%), Gaps = 39/194 (20%) Query: 223 VILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 I+G++N GKSS+ AL+ KD T P T R +T+D +LE + ++DT G Sbjct: 229 AIVGYTNVGKSSILRALSGAEILVKDQLFATLDPTTRR--ITLDDNLE---LLLTDTVGF 283 Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSK-------------KEI-SFPKNIDFI 323 E K T E AD +LL+ +++S KE+ + KNI + Sbjct: 284 VRKLPHSLVEAFKSTLEEAVLADFLLLVLDLSSNQLDAEWETTMSVLKELGAEEKNIQVV 343 Query: 324 F-----IGTKSDLYSTY-------TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371 F + ++DL T Y IS+ TGEG+++L ++ S+ S +F+ L Sbjct: 344 FNKLDLVDRENDLVRLARMNGLFPTAIY---ISTATGEGMDKLRERLASLASERFELLRV 400 Query: 372 SIPSHKRHLYHLSQ 385 ++P + L L+ Sbjct: 401 TLPPARSDLAALAH 414 >gi|116749276|ref|YP_845963.1| small GTP-binding protein [Syntrophobacter fumaroxidans MPOB] gi|116698340|gb|ABK17528.1| small GTP-binding protein [Syntrophobacter fumaroxidans MPOB] Length = 422 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 33/87 (37%), Positives = 50/87 (57%), Gaps = 2/87 (2%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280 I I G N GKSSL NA+ +++VAIV++I GTT D + ++L V DTAGI + Sbjct: 12 IGIFGRRNVGKSSLLNAVTRQEVAIVSEIAGTTTDPVEKPMELLPLGPVLFIDTAGIDDE 71 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE 307 + E +++T + DL +L+ E Sbjct: 72 GALGELR-VRKTRQVFDRTDLGVLVAE 97 >gi|315108429|gb|EFT80405.1| GTP-binding protein Era [Propionibacterium acnes HL030PA2] Length = 342 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 38/137 (27%), Positives = 61/137 (44%), Gaps = 13/137 (9%) Query: 210 GKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266 ++ E R G+ + +G NAGKS+L NAL +AI + P TTR V+ + E Sbjct: 30 ARVAESTRAGFHSGFVCFVGRPNAGKSTLTNALVGSKIAIASSKPQTTRHVIRGVVTDEK 89 Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEIS-F 316 + + DT G+ + ++ + F D+I + N + EI+ Sbjct: 90 SQIVVIDTPGLHKPRTLLGQRLNDLVFDTWTQVDVIGVCLPSNQRIGPGDTYLVSEIAEL 149 Query: 317 PKNIDFIFIGTKSDLYS 333 P+ I + TKSDL S Sbjct: 150 PRRPTLIALATKSDLVS 166 >gi|283783065|ref|YP_003373819.1| GTP-binding protein HflX [Gardnerella vaginalis 409-05] gi|283442222|gb|ADB14688.1| GTP-binding protein HflX [Gardnerella vaginalis 409-05] Length = 512 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 45/173 (26%), Positives = 77/173 (44%), Gaps = 20/173 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G++NAGKSS+ N L + + T + +G + DT G Sbjct: 295 VAVVGYTNAGKSSIINRLTGSQELVENALFATLDTAVRRSQTQDGRSYTLVDTVGFVRRL 354 Query: 282 DIVEKEGIKRTFLEVENADLIL---------LLKEINSKKE----ISFPKNIDFIFIGTK 328 E K T EV AD+IL + +IN+ E IS ++I I K Sbjct: 355 PTQLVEAFKSTLEEVGQADVILHVVDGSHPDPISQINAVNEVLANISGVEDIPQIMALNK 414 Query: 329 SDLYSTYTEE-----YDH--LISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374 SD+ S E Y ++S+F+GE L+ L N+++ +L + ++ ++P Sbjct: 415 SDMMSDAARERFSSLYSDAVIVSAFSGENLQILRNRLEELLPSPRVRVDVTLP 467 >gi|241068611|ref|XP_002408485.1| GTP-binding protein EngA, putative [Ixodes scapularis] gi|215492473|gb|EEC02114.1| GTP-binding protein EngA, putative [Ixodes scapularis] Length = 317 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 36/65 (55%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +IV+ G NAGKS+ NAL + + G TR+ + ID + +K+ DTAG+R+ Sbjct: 51 QIVVSGRPNAGKSTFINALINDERLLTGPEAGITRESIEIDWQYKNNHIKLIDTAGLRKK 110 Query: 281 DDIVE 285 I E Sbjct: 111 STITE 115 >gi|254413822|ref|ZP_05027591.1| hypothetical protein MC7420_3938 [Microcoleus chthonoplastes PCC 7420] gi|196179419|gb|EDX74414.1| hypothetical protein MC7420_3938 [Microcoleus chthonoplastes PCC 7420] Length = 206 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 1/83 (1%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ ++G N GKS LFNAL V V++ PGTT +V + + + DT G+ Sbjct: 39 QVALVGTPNVGKSVLFNALTGTYVT-VSNYPGTTVEVSRGQMTVGDRPFAVVDTPGMYSL 97 Query: 281 DDIVEKEGIKRTFLEVENADLIL 303 I E+E + R L E DL++ Sbjct: 98 LPITEEEKVSRDLLLSEPVDLVI 120 >gi|110801995|ref|YP_698946.1| ferrous iron transport protein B [Clostridium perfringens SM101] gi|110682496|gb|ABG85866.1| ferrous iron transport protein B [Clostridium perfringens SM101] Length = 587 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 43/84 (51%), Gaps = 9/84 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL--VKISDTAGIRE 279 I +LG+ N GK++LFNAL + V + PG T D EG+ KI D GI Sbjct: 4 IALLGNPNVGKTTLFNALTGSNQH-VGNWPGVTVD------KKEGFFNSNKIVDLPGIYA 56 Query: 280 TDDIVEKEGIKRTFLEVENADLIL 303 D +E + + FLE + DLIL Sbjct: 57 LDTFSNEEKVSKKFLESGDVDLIL 80 >gi|291524971|emb|CBK90558.1| GTP-binding protein Era [Eubacterium rectale DSM 17629] gi|291529105|emb|CBK94691.1| GTP-binding protein Era [Eubacterium rectale M104/1] Length = 303 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 46/176 (26%), Positives = 76/176 (43%), Gaps = 37/176 (21%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRET 280 + I+G N GKS+L N L + +AI ++ P TTR+ + T+ D+E + DT GI + Sbjct: 10 VTIIGRPNVGKSTLMNRLIGQKIAITSNKPQTTRNRIQTVYTDMEKGQIVFLDTPGIHKA 69 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE------------INSKKEISFPKNIDFIFIGTK 328 + + + + + D++L L E I K+++ P I I K Sbjct: 70 KNKLGEYMVNVAEKTLNEVDVVLWLVEPTNFIGAGEQHIIEQLKKVNTP----VILIINK 125 Query: 329 SDLY---------STYTEEYDHL----ISSFTGEGLEELINKIKSILSNKFKKLPF 371 D TY + YD S+ G+ +++IN I FK LP+ Sbjct: 126 VDTVEKEKVLEYIDTYRKVYDFAEIIPTSALRGQNTDDVINSI-------FKYLPY 174 >gi|295696076|ref|YP_003589314.1| ribosome biogenesis GTP-binding protein YlqF [Bacillus tusciae DSM 2912] gi|295411678|gb|ADG06170.1| ribosome biogenesis GTP-binding protein YlqF [Bacillus tusciae DSM 2912] Length = 290 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 59/135 (43%), Gaps = 20/135 (14%) Query: 216 IRN-GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274 +RN G +++ILG N GKSSL N LA + A D+PG TR I EG+ ++ DT Sbjct: 116 VRNRGVRVLILGIPNVGKSSLINRLAGRSAAKTGDLPGVTRAQQWIRTS-EGF--ELLDT 172 Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYST 334 GI + + E+ + LLL + KE P +F+ + L T Sbjct: 173 PGI--------------LWPKFEDPETGLLLAATGAIKEEILPLEDVAVFLFKRLQL--T 216 Query: 335 YTEEYDHLISSFTGE 349 Y TGE Sbjct: 217 YPRALAGRYGDLTGE 231 >gi|237785456|ref|YP_002906161.1| bifunctional cytidylate kinase/GTP-binding protein [Corynebacterium kroppenstedtii DSM 44385] gi|237758368|gb|ACR17618.1| cytidylate kinase [Corynebacterium kroppenstedtii DSM 44385] Length = 784 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 ++ ++G N GKSSL N + +D A+V D+ GTT D + ++L+ DTAGIR+ Sbjct: 524 RVALVGKPNVGKSSLLNKMTGEDRAVVDDVAGTTVDPVDSLVELDQKTWTFVDTAGIRK 582 Score = 43.9 bits (102), Expect = 0.045, Method: Compositional matrix adjust. Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 6/97 (6%) Query: 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK------IVILGHSNAGKSSLFNAL 239 + + EV N ++ +D H + G GY + ILG N GKS+L N Sbjct: 310 DITDDEVNNLLVTSDSDTDWHSVEEAFGVFDDAGYTSEALCTVAILGRPNVGKSTLVNRF 369 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 + A+V D PG TRD ++ + G + DT G Sbjct: 370 IGRREAVVEDFPGVTRDRISYLGEWNGRRFWVQDTGG 406 >gi|313813037|gb|EFS50751.1| GTP-binding protein Era [Propionibacterium acnes HL025PA1] gi|327330798|gb|EGE72544.1| GTP-binding protein Era [Propionibacterium acnes HL097PA1] Length = 342 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 46/192 (23%), Positives = 82/192 (42%), Gaps = 27/192 (14%) Query: 210 GKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266 ++ E R G+ + +G NAGKS+L NAL +AI + P TTR V+ + E Sbjct: 30 ARVAESTRAGFHSGFVCFVGRPNAGKSTLTNALVGSKIAIASSKPQTTRHVIRGVVTDEK 89 Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEIS-F 316 + + DT G+ + ++ + F D+I + N + +I+ Sbjct: 90 SQIVVIDTPGLHKPRTLLGQRLNDLVFDTWTQVDVIGVCLPSNQRIGPGDTYLVSQIAEL 149 Query: 317 PKNIDFIFIGTKSDLYS-TYTEEYDHLISSFTGE-GLE------------ELINKIKSIL 362 P+ I + TKSDL S E+ I GE G+E E +++++ ++ Sbjct: 150 PRRPTLIALATKSDLVSKARMAEHLAAIDKLQGEVGIEFVEIVPCSAVSGEQVDEVRDVI 209 Query: 363 SNKFKKLPFSIP 374 ++ + P P Sbjct: 210 ASLLPEGPAYYP 221 >gi|257468027|ref|ZP_05632123.1| GTP-binding protein [Fusobacterium ulcerans ATCC 49185] gi|317062313|ref|ZP_07926798.1| GTP-binding protein [Fusobacterium ulcerans ATCC 49185] gi|313687989|gb|EFS24824.1| GTP-binding protein [Fusobacterium ulcerans ATCC 49185] Length = 404 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 30/68 (44%), Positives = 43/68 (63%), Gaps = 6/68 (8%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDTA 275 N I I G +NAGKSSL N + +++++V+D+ GTT D + ++L G +V I DTA Sbjct: 8 NRVHIAIFGRTNAGKSSLINCITNQNISLVSDVKGTTTDPVYKAMELLPIGPVVFI-DTA 66 Query: 276 GIRETDDI 283 GI DDI Sbjct: 67 GI---DDI 71 >gi|284032597|ref|YP_003382528.1| GTP-binding proten HflX [Kribbella flavida DSM 17836] gi|283811890|gb|ADB33729.1| GTP-binding proten HflX [Kribbella flavida DSM 17836] Length = 496 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 79/166 (47%), Gaps = 31/166 (18%) Query: 222 IVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG- 276 + I G++NAGKSSL NA+ V A+ + TTR T D G + +DT G Sbjct: 276 VAIAGYTNAGKSSLLNAITGAGVLVENALFATLDPTTRKTTTAD----GRVYTFTDTVGF 331 Query: 277 IRE-TDDIVEKEGIKRTFLEVENADLIL---------LLKEINSKKEISF---PKNIDFI 323 +R DIV E + T EV +ADL+L L +I + +E+ ++ I Sbjct: 332 VRHLPHDIV--EAFRSTLEEVADADLLLHVVDGSHPDPLAQIQAVREVLHEIGATDVPEI 389 Query: 324 FIGTKSDLYST-------YTEEYDHLISSFTGEGLEELINKIKSIL 362 + K D+ + E ++S+ TGEG+++L ++++ L Sbjct: 390 IVINKGDVADPMALAPILHRETGAIVVSARTGEGIDKLRAQVEAAL 435 >gi|168211453|ref|ZP_02637078.1| ferrous iron transport protein B [Clostridium perfringens B str. ATCC 3626] gi|170710554|gb|EDT22736.1| ferrous iron transport protein B [Clostridium perfringens B str. ATCC 3626] Length = 587 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 43/84 (51%), Gaps = 9/84 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL--VKISDTAGIRE 279 I +LG+ N GK++LFNAL + V + PG T D EG+ KI D GI Sbjct: 4 IALLGNPNVGKTTLFNALTGSNQH-VGNWPGVTVD------KKEGFFNSNKIVDLPGIYA 56 Query: 280 TDDIVEKEGIKRTFLEVENADLIL 303 D +E + + FLE + DLIL Sbjct: 57 LDTFSNEEKVSKKFLESGDVDLIL 80 >gi|309789730|ref|ZP_07684310.1| GTP-binding protein Era [Oscillochloris trichoides DG6] gi|308228216|gb|EFO81864.1| GTP-binding protein Era [Oscillochloris trichoides DG6] Length = 466 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 79/168 (47%), Gaps = 21/168 (12%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R+G+ + ++G N GKS+L N L + V IV+ TTR + L V DT G Sbjct: 173 RSGF-VALVGKPNVGKSTLLNTLLGQKVTIVSPRAQTTRVPVRGILSRPDAQVVFIDTPG 231 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPKNIDF-----IFIGTK 328 I + + K ++ + NAD+I + +I+ S+ + S + + + + K Sbjct: 232 IHQPSHKLGKFMVELAERTLPNADVICFMVDISQPPSQLDRSIAEQVQRARAHKLLLLNK 291 Query: 329 SDLY----STYTEEYDHL--------ISSFTGEGLEELINKIKSILSN 364 D+ +TY EEY L IS+ G+GL L+++I + L N Sbjct: 292 VDIPPRRGTTYLEEYRSLGTWDMEMAISAQRGQGLSSLLDEIVARLPN 339 >gi|290981914|ref|XP_002673676.1| GTP-binding protein [Naegleria gruberi] gi|284087261|gb|EFC40932.1| GTP-binding protein [Naegleria gruberi] Length = 645 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 34/60 (56%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 +G I +GH N GKSS+ NAL K V + PG T+ V T+ L+ + +++ D G+ Sbjct: 421 DGCVIGFVGHPNVGKSSIINALTGKKVVSTSYTPGHTKHVQTLYLETKNKMIQFCDCPGL 480 >gi|269956364|ref|YP_003326153.1| cytidylate kinase [Xylanimonas cellulosilytica DSM 15894] gi|269305045|gb|ACZ30595.1| cytidylate kinase [Xylanimonas cellulosilytica DSM 15894] Length = 725 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 1/67 (1%) Query: 213 GEIIRNG-YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 GE+ G ++ ++G N GKSSL N +A + +V +I GTTRD + + L+G Sbjct: 457 GELRPTGPRRVALVGRPNVGKSSLLNKVAGSERVVVDEIAGTTRDPVDELILLKGVPYWF 516 Query: 272 SDTAGIR 278 DTAGIR Sbjct: 517 VDTAGIR 523 Score = 43.1 bits (100), Expect = 0.097, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 30/55 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 + I+G N GKS+L N + + A+V D PG TRD +T + G + DT G Sbjct: 293 LAIIGRPNVGKSTLVNRVIGRREAVVEDKPGVTRDRVTYPAEWAGREFHVVDTGG 347 >gi|110798573|ref|YP_696346.1| ferrous iron transport protein B [Clostridium perfringens ATCC 13124] gi|110673220|gb|ABG82207.1| ferrous iron transport protein B [Clostridium perfringens ATCC 13124] Length = 587 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 43/84 (51%), Gaps = 9/84 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL--VKISDTAGIRE 279 I +LG+ N GK++LFNAL + V + PG T D EG+ KI D GI Sbjct: 4 IALLGNPNVGKTTLFNALTGSNQH-VGNWPGVTVD------KKEGFFNSNKIVDLPGIYA 56 Query: 280 TDDIVEKEGIKRTFLEVENADLIL 303 D +E + + FLE + DLIL Sbjct: 57 LDTFSNEEKVSKKFLESGDVDLIL 80 >gi|300934024|ref|ZP_07149280.1| bifunctional cytidylate kinase/GTP-binding protein [Corynebacterium resistens DSM 45100] Length = 811 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 26/91 (28%), Positives = 50/91 (54%), Gaps = 6/91 (6%) Query: 189 SKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVT 248 + +VL+ +L S Q + I+ ++ ++G N GKSSL N + ++ ++V Sbjct: 525 AADVLDQVL------SDFPDQPRETSIVSGPRRVALVGRPNVGKSSLLNKVTGEERSVVD 578 Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 ++ GTT D + ++L+ + + DTAGIR+ Sbjct: 579 NVAGTTVDPVDSIVELDEHTWRFVDTAGIRK 609 Score = 44.3 bits (103), Expect = 0.036, Method: Compositional matrix adjust. Identities = 36/138 (26%), Positives = 61/138 (44%), Gaps = 13/138 (9%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+L N + A+V D PG TRD ++ + G + DT G Sbjct: 379 VAIVGRPNVGKSTLVNRFIGRREAVVEDFPGVTRDRISYLGEWTGRRFWVQDTGGWDPDA 438 Query: 282 DIVEKEGIKRTFLEVENADLILLLKE----INSKKEISFPK----NIDFIFIGTKSDLYS 333 + ++ ++ AD+I+ + + I + E+ K +I I + K D S Sbjct: 439 KGIHAAIARQAETAMDTADVIVFVVDTKVGITATDEVIARKLQRSSIPVILVANKFDSDS 498 Query: 334 TYTEEYDHLISSFTGEGL 351 Y + ++ F G GL Sbjct: 499 QYAD-----MAEFWGLGL 511 >gi|218246630|ref|YP_002372001.1| small GTP-binding protein [Cyanothece sp. PCC 8801] gi|257059673|ref|YP_003137561.1| small GTP-binding protein [Cyanothece sp. PCC 8802] gi|218167108|gb|ACK65845.1| small GTP-binding protein [Cyanothece sp. PCC 8801] gi|256589839|gb|ACV00726.1| small GTP-binding protein [Cyanothece sp. PCC 8802] Length = 214 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS LFN L V++ PGTT ++ + G V I DT G+ Sbjct: 48 IALVGSPNVGKSLLFNLLTG-GYTTVSNYPGTTVEIAKSQGIIGGQKVTIIDTPGMYSLM 106 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 + E+E R FL E DL++ Sbjct: 107 SMTEEEQFTRDFLLTEPIDLVI 128 >gi|168216946|ref|ZP_02642571.1| ferrous iron transport protein B [Clostridium perfringens NCTC 8239] gi|182380933|gb|EDT78412.1| ferrous iron transport protein B [Clostridium perfringens NCTC 8239] Length = 587 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 43/84 (51%), Gaps = 9/84 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL--VKISDTAGIRE 279 I +LG+ N GK++LFNAL + V + PG T D EG+ KI D GI Sbjct: 4 IALLGNPNVGKTTLFNALTGSNQH-VGNWPGVTVD------KKEGFFNSNKIVDLPGIYA 56 Query: 280 TDDIVEKEGIKRTFLEVENADLIL 303 D +E + + FLE + DLIL Sbjct: 57 LDTFSNEEKVSKKFLESGDVDLIL 80 >gi|15672203|ref|NP_266377.1| GTP-binding protein YqeH [Lactococcus lactis subsp. lactis Il1403] gi|12723078|gb|AAK04319.1|AE006260_2 GTP-binding protein [Lactococcus lactis subsp. lactis Il1403] Length = 381 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 35/103 (33%), Positives = 49/103 (47%), Gaps = 15/103 (14%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268 E R G + ++G +N GKS+L NA+ K +DV + PGTT D + I LD + L Sbjct: 175 EYYRRGRDVYVVGVTNVGKSTLINAIIKSASGSEDVITTSRFPGTTLDKIEIPLDEDSAL 234 Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311 + DT GI I +LE E+ + KEI K Sbjct: 235 I---DTPGIIHRGQIAH-------YLEPEDLKYVSPRKEIKPK 267 >gi|221194745|ref|ZP_03567802.1| GTP-binding protein HflX [Atopobium rimae ATCC 49626] gi|221185649|gb|EEE18039.1| GTP-binding protein HflX [Atopobium rimae ATCC 49626] Length = 429 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 58/205 (28%), Positives = 84/205 (40%), Gaps = 37/205 (18%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 + + + G++NAGKS+L N L V + + TTR TI L+ EG + ++DT Sbjct: 210 FSVSLAGYTNAGKSTLLNQLTNASVYAKDELFATLDPTTR---TITLE-EGRKITLTDTV 265 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLL---------KEIN-------------SKKE 313 G + E K T E + ADLILL+ KEI KK Sbjct: 266 GFIQKLPTTLIESFKSTLAEAQAADLILLVVDASDKNFDKEIEVVTSILNDIKVSAHKKL 325 Query: 314 ISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373 + F K ID + + + + Y + IS+ GL L+ I I K L I Sbjct: 326 LVFNK-IDLLDTNNLAKMRTLYPDAV--FISAQKAMGLRGLLYTIAHIAGEDDKTLHVCI 382 Query: 374 PSHKRHLYHL----SQTVRYLEMAS 394 P + L H+ Q +R AS Sbjct: 383 PFDQGFLIHMVHERCQIIRTCYQAS 407 >gi|319405459|emb|CBI79078.1| GTP-binding protein Era [Bartonella sp. AR 15-3] Length = 300 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 44/168 (26%), Positives = 82/168 (48%), Gaps = 22/168 (13%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R+G+ + ++G NAGKS+L N L V+IVT TTR ++ + + + + DT G Sbjct: 8 RSGF-VALIGVPNAGKSTLVNQLVGTKVSIVTHKVQTTRTLVRGIVIYDKTQIILIDTPG 66 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS--KKEISFPKNI------DFIFIGTK 328 + +E+ + + +NAD++L+L ++ S E+S +I D I + K Sbjct: 67 VFRPHKRLERAMVSAAWGGAKNADILLVLIDVQSGLSDEVSAMLDILKSVEQDKILVLNK 126 Query: 329 SD---------LYSTYTEEYDHL----ISSFTGEGLEELINKIKSILS 363 D L + E+ + L IS+ G G ++L++ + +I+ Sbjct: 127 IDTVVKSSLLALTAQVNEQVNFLQTFMISALNGSGCKDLLHYLSTIMQ 174 >gi|220909819|ref|YP_002485130.1| small GTP-binding protein [Cyanothece sp. PCC 7425] gi|219866430|gb|ACL46769.1| small GTP-binding protein [Cyanothece sp. PCC 7425] Length = 520 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 62/123 (50%), Gaps = 6/123 (4%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG--YLVKISDTAGI 277 ++IV+ G +AGK+SL NAL + V V+ GTT T L LEG + + I+DT GI Sbjct: 129 FRIVVFGTGSAGKTSLVNALMGRMVGEVSAPMGTTAVGETYCLPLEGFDWDIYITDTPGI 188 Query: 278 RETDDI-VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336 E E+E + R ADL+L + + N ++ + + + +G +S L Sbjct: 189 LEAGIAGTEREQMARQL--ATEADLLLFVLD-NDLRQSEYQPLLSLVRMGKRSLLILNKI 245 Query: 337 EEY 339 + Y Sbjct: 246 DRY 248 >gi|165973368|ref|NP_001107148.1| RAS-like, estrogen-regulated, growth inhibitor [Xenopus (Silurana) tropicalis] gi|161612291|gb|AAI55995.1| rerg protein [Xenopus (Silurana) tropicalis] Length = 199 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 50/158 (31%), Positives = 68/158 (43%), Gaps = 39/158 (24%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTD--IPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 KI ILG + GKS+L K D + T R TID DL +++ DTAG Sbjct: 8 KIAILGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDDL--VTMELLDTAG-- 63 Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSK-------------KEISFPKNIDFIFI 325 +D +++EG V AD ++ +I K EI PKN+ FI + Sbjct: 64 -QEDTIQREG------HVRWADGFAIVYDITDKGSFDEVLPFKNLLDEIKKPKNVTFILV 116 Query: 326 GTKSDL---YSTYTEEYDHL----------ISSFTGEG 350 G K+DL TEE + L S+ TGEG Sbjct: 117 GNKADLDHCRQVSTEEGEKLATELACAFYECSACTGEG 154 >gi|163851698|ref|YP_001639741.1| GTP-binding protein Era [Methylobacterium extorquens PA1] gi|163663303|gb|ABY30670.1| GTP-binding protein Era [Methylobacterium extorquens PA1] Length = 326 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 51/191 (26%), Positives = 86/191 (45%), Gaps = 32/191 (16%) Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG- 266 +QG+ E R G+ + ++G NAGKS+L NAL V+IV+ TTR L + +EG Sbjct: 23 AQGQPREETRAGF-VALIGVPNAGKSTLLNALVGAKVSIVSRKVQTTR-ALVRGIVMEGN 80 Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK-------------- 312 + + DT GI +++ + + +AD + LL I+++K Sbjct: 81 AQIVLVDTPGIFAPKRRLDRAMVHSAWSGAADADAVCLL--IDARKGADEEVETILRRLP 138 Query: 313 EISFPK-----NIDFI----FIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363 E+ PK ID I + + L + E LIS+ G+G+ +L + L+ Sbjct: 139 EVKRPKILILNKIDLIARERLLELVAKLNAMVPFEDTFLISALKGDGIADL----RKALA 194 Query: 364 NKFKKLPFSIP 374 + P+ P Sbjct: 195 ARMPPSPWLYP 205 >gi|326333977|ref|ZP_08200207.1| GTP-binding protein Era [Nocardioidaceae bacterium Broad-1] gi|325948256|gb|EGD40366.1| GTP-binding protein Era [Nocardioidaceae bacterium Broad-1] Length = 315 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 73/147 (49%), Gaps = 30/147 (20%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-IDLDLEGYLVKISDTA 275 R+G+ + +G NAGKS+L NAL VAI +D P TTR V+ I +G L+ + DT Sbjct: 14 RSGF-VSFVGRPNAGKSTLTNALVGTKVAITSDKPQTTRTVVKGIVHRPDGQLI-LVDTP 71 Query: 276 GIRET--------DDIVEKEGIKRTFLEVENADLILLLKEINSK-----KEIS-----FP 317 GI +D+VE T+ EV D++ + N K + I+ Sbjct: 72 GIHRPRTLLGERLNDLVEA-----TWTEV---DVVAICFPCNEKIGPGDRRIAENANKLK 123 Query: 318 KNIDFIFIGTKSDLYSTYTEEYDHLIS 344 K I + + TK+DL +T + +HL+S Sbjct: 124 KGIKRVAVATKTDL-ATPEQIGEHLMS 149 >gi|317494160|ref|ZP_07952576.1| hypothetical protein HMPREF0864_03345 [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917933|gb|EFV39276.1| hypothetical protein HMPREF0864_03345 [Enterobacteriaceae bacterium 9_2_54FAA] Length = 295 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 1/82 (1%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 L +I IS+ ++ E+I I I+G + AGKSSL NA+ K D+ V+D+ TR+ Sbjct: 19 LPENIRESISR-RINEVINYEPVIGIMGKTGAGKSSLCNAIFKGDICAVSDVEACTRETQ 77 Query: 259 TIDLDLEGYLVKISDTAGIRET 280 + + +++ D G+ E+ Sbjct: 78 EVRIQFGKRAIRLIDIPGVGES 99 >gi|168207503|ref|ZP_02633508.1| ferrous iron transport protein B [Clostridium perfringens E str. JGS1987] gi|170661126|gb|EDT13809.1| ferrous iron transport protein B [Clostridium perfringens E str. JGS1987] Length = 587 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 43/84 (51%), Gaps = 9/84 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL--VKISDTAGIRE 279 I +LG+ N GK++LFNAL + V + PG T D EG+ KI D GI Sbjct: 4 IALLGNPNVGKTTLFNALTGSNQH-VGNWPGVTVD------KKEGFFNSNKIVDLPGIYA 56 Query: 280 TDDIVEKEGIKRTFLEVENADLIL 303 D +E + + FLE + DLIL Sbjct: 57 LDTFSNEEKVSKKFLESGDVDLIL 80 >gi|153953550|ref|YP_001394315.1| GTP-binding protein Era [Clostridium kluyveri DSM 555] gi|219854172|ref|YP_002471294.1| hypothetical protein CKR_0829 [Clostridium kluyveri NBRC 12016] gi|189037262|sp|A5N6N6|ERA_CLOK5 RecName: Full=GTPase Era gi|254783294|sp|B9E055|ERA_CLOK1 RecName: Full=GTPase Era gi|146346431|gb|EDK32967.1| Predicted GTP-binding protein [Clostridium kluyveri DSM 555] gi|219567896|dbj|BAH05880.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 293 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 29/91 (31%), Positives = 51/91 (56%), Gaps = 1/91 (1%) Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274 +I++G+ I I+G N GKS+L N++ + ++IV+ P TTR+ + L + + + DT Sbjct: 1 MIKSGF-ITIIGRPNVGKSTLLNSIMGEKLSIVSCKPQTTRNSIQTILTRDDFQLIFVDT 59 Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLL 305 GI + + +K V++ DLIL L Sbjct: 60 PGIHKPKHKLGNYMVKVAESSVKDVDLILFL 90 >gi|313680895|ref|YP_004058634.1| ferrous iron transport protein b [Oceanithermus profundus DSM 14977] gi|313153610|gb|ADR37461.1| ferrous iron transport protein B [Oceanithermus profundus DSM 14977] Length = 706 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 1/73 (1%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 +G ++V +G+ N GK++L NALA ++ V + PGTT D L L L G V++ D G Sbjct: 17 DGTRVVTVGNPNTGKTTLINALAGSNLK-VGNWPGTTVDRLEARLRLPGGTVRLVDLPGA 75 Query: 278 RETDDIVEKEGIK 290 + +E + Sbjct: 76 YSLNPTTPEEALA 88 >gi|302382897|ref|YP_003818720.1| GTP-binding proten HflX [Brevundimonas subvibrioides ATCC 15264] gi|302193525|gb|ADL01097.1| GTP-binding proten HflX [Brevundimonas subvibrioides ATCC 15264] Length = 443 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 77/172 (44%), Gaps = 32/172 (18%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280 + ++G++NAGKS+LFN L +V + D+ T D + L +G I+DT G Sbjct: 220 VALVGYTNAGKSTLFNRLTGSEV-LAKDLLFATLDTTQRTIRLPQGRPAIIADTVGF--I 276 Query: 281 DDIVEK--EGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF-------------- 324 D+ + E + T EV ADLIL +++I S + K+++ + Sbjct: 277 SDLPHELVESFRATLEEVGEADLILHVRDIASADTAAQAKDVEDVLKQIEQPEGKPRRIL 336 Query: 325 -IGTKSDLYSTYTEEYDH-----------LISSFTGEGLEELINKIKSILSN 364 + K+DL E +S++TG+G+E L I ++ + Sbjct: 337 EVWNKTDLLDPEAREAVEGQAARSGNTAVAVSAWTGQGIETLRQAITDLIDD 388 >gi|89076512|ref|ZP_01162826.1| putative GTPase [Photobacterium sp. SKA34] gi|89047830|gb|EAR53426.1| putative GTPase [Photobacterium sp. SKA34] Length = 317 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 9/85 (10%) Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252 +N I+ L ++ H + G+ IR +I+G N GKS++ NALA + VAI + P Sbjct: 99 VNQIMDLCRKLAPHREEA--GKKIRT----MIMGIPNVGKSTIINALAGRTVAITGNQPA 152 Query: 253 TTRDVLTIDLDLEGYLVKISDTAGI 277 TR I+LD G L +SDT GI Sbjct: 153 VTRQQQRINLD-NGVL--LSDTPGI 174 >gi|55821597|ref|YP_140039.1| GTP-binding protein YqeH [Streptococcus thermophilus LMG 18311] gi|55737582|gb|AAV61224.1| conserved hypothetical protein [Streptococcus thermophilus LMG 18311] Length = 372 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 38/69 (55%), Gaps = 8/69 (11%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268 E +R G + ++G +N GKS+L NA+ K KDV + PGTT D + I LD Y Sbjct: 158 EALRKGRDVYVVGVTNVGKSTLINAIIKEITGDKDVITTSRFPGTTLDKIEIPLDDGSY- 216 Query: 269 VKISDTAGI 277 I DT GI Sbjct: 217 --IFDTPGI 223 >gi|317496984|ref|ZP_07955314.1| small GTP-binding domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|316895996|gb|EFV18148.1| small GTP-binding domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 402 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 31/86 (36%), Positives = 53/86 (61%), Gaps = 4/86 (4%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTAGIRE 279 I + G NAGKSS+ NA+ +++AIV+D+ GTT D + ++L G +V I DT G+ + Sbjct: 14 IALFGKRNAGKSSVINAMTNQELAIVSDVKGTTTDPVYKAMELLPLGPVVMI-DTPGLDD 72 Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305 ++ EK +K+ + AD+ L++ Sbjct: 73 EGELGEKR-VKKAKEVLGKADIALVI 97 >gi|55823525|ref|YP_141966.1| GTP-binding protein YqeH [Streptococcus thermophilus CNRZ1066] gi|116628312|ref|YP_820931.1| GTP-binding protein YqeH [Streptococcus thermophilus LMD-9] gi|55739510|gb|AAV63151.1| conserved hypothetical protein [Streptococcus thermophilus CNRZ1066] gi|116101589|gb|ABJ66735.1| Predicted GTPase [Streptococcus thermophilus LMD-9] gi|312278936|gb|ADQ63593.1| Ribosome biogenesis GTPase YqeH [Streptococcus thermophilus ND03] Length = 372 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 38/69 (55%), Gaps = 8/69 (11%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268 E +R G + ++G +N GKS+L NA+ K KDV + PGTT D + I LD Y Sbjct: 158 EALRKGRDVYVVGVTNVGKSTLINAIIKEITGDKDVITTSRFPGTTLDKIEIPLDDGSY- 216 Query: 269 VKISDTAGI 277 I DT GI Sbjct: 217 --IFDTPGI 223 >gi|227874499|ref|ZP_03992671.1| GTP-binding protein Era [Oribacterium sinus F0268] gi|227839643|gb|EEJ50101.1| GTP-binding protein Era [Oribacterium sinus F0268] Length = 319 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 59/187 (31%), Positives = 86/187 (45%), Gaps = 46/187 (24%) Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 +++G+ + I+G NAGKS+L NAL + VAI + P TTR+ + D E + DT Sbjct: 24 VKSGF-VSIVGLPNAGKSTLLNALIGQKVAITSKKPQTTRNQIMAVYDEERGQIVFHDTP 82 Query: 276 GIRETDDI--VEKEGIKRTFLEVENADLIL------------------LLKEINSKKEIS 315 GI + + V E + L N DL+L LLK +SK++I Sbjct: 83 GIHKAKNQLSVYMESVAEKAL--GNGDLVLYIVDATEQKGEKEEQILSLLK--HSKRKII 138 Query: 316 FPKN-IDFI-----FIGTKSDLYSTYTEEYDHL----ISSFTGEGLEELINKIKSILSNK 365 N +D + F+ K D Y +E D IS++ +GLEEL K IL Sbjct: 139 LVLNKLDLLGGEDAFLKKKED----YEKELDFAAIVGISAYKSQGLEEL----KDIL--- 187 Query: 366 FKKLPFS 372 F LP+ Sbjct: 188 FDLLPYG 194 >gi|188996268|ref|YP_001930519.1| small GTP-binding protein [Sulfurihydrogenibium sp. YO3AOP1] gi|188931335|gb|ACD65965.1| small GTP-binding protein [Sulfurihydrogenibium sp. YO3AOP1] Length = 197 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 39/131 (29%), Positives = 58/131 (44%), Gaps = 34/131 (25%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR---------DVLTIDLDLEGYLVKIS 272 I I+G SN GKSSL NA+ K+ +A V+ PG T+ D+ +DL G+ Sbjct: 27 IAIVGRSNVGKSSLINAIFKRSIAKVSATPGKTKLINFFLLNDDIYFVDLPGYGF----- 81 Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNID----------- 321 A + + K I+ L EN +LI++L + P N+D Sbjct: 82 --AAVSHKEKQNWKRMIEDYLLNRENLNLIIMLVDTRYP-----PTNLDILMKEWLESFE 134 Query: 322 --FIFIGTKSD 330 +I +GTK D Sbjct: 135 KPYIVVGTKID 145 >gi|21226612|ref|NP_632534.1| GTP-binding protein [Methanosarcina mazei Go1] gi|20904890|gb|AAM30206.1| GTP-binding protein [Methanosarcina mazei Go1] Length = 355 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 38/107 (35%), Positives = 54/107 (50%), Gaps = 10/107 (9%) Query: 217 RNGYKIVIL-GHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKI 271 R G+ +V L G++NAGKS+LFNA+ + V + T + TTR LDL G + Sbjct: 123 RKGFSLVALAGYTNAGKSTLFNAIVNESVEARNMLFTTLVPTTR-----ALDLGGRKALL 177 Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK 318 +DT G E + K T E+ +DLILL+ + K E K Sbjct: 178 TDTVGFIEELPHWLVDAFKSTLDEIFLSDLILLVVDAGEKPETILQK 224 >gi|297794363|ref|XP_002865066.1| GTP binding protein [Arabidopsis lyrata subsp. lyrata] gi|297310901|gb|EFH41325.1| GTP binding protein [Arabidopsis lyrata subsp. lyrata] Length = 427 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 57/246 (23%), Positives = 108/246 (43%), Gaps = 50/246 (20%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R+GY + +LG N GKS+L N + + ++IVTD P TTR + Y + + DT G Sbjct: 128 RSGY-VAVLGMPNVGKSTLSNQMIGQKISIVTDKPQTTRHRILGICSSPEYQMILYDTPG 186 Query: 277 IRETD----DIVEKEGIKRTFLEVENADLILLL----------KEINSKKEISFPKNIDF 322 + E D + + ++ + NAD +++L +E+ + + K Sbjct: 187 VIEKKMHRLDTMMMKNVRDAAI---NADCVVILVDACKTPTYIEEVLKEGLGNLEKKPPM 243 Query: 323 IFIGTKSDL------------YSTYTEEYDHLI--SSFTGEGLEELINKIKSILSNKFKK 368 + + K DL Y +T + D +I S+ G G+E++ I S K Sbjct: 244 LLVMNKKDLIKPGEIAKKLEWYEKFT-DVDEVIPVSAKYGHGIEDVKEWILS-------K 295 Query: 369 LPFSIPSHKRHL-------YHLSQTVR---YLEMASLNEKDCGLDIIAENLRLASVSLGK 418 LPF P + + + + +S+ VR +++ + C +++++ R A+ + Sbjct: 296 LPFGPPYYPKDIVSEHPERFFVSEIVREKIFMQYRNEVPYACQVNVLSYKTRPAAKDFIQ 355 Query: 419 ITGCVD 424 + VD Sbjct: 356 VEVVVD 361 >gi|156937792|ref|YP_001435588.1| small GTP-binding protein [Ignicoccus hospitalis KIN4/I] gi|156566776|gb|ABU82181.1| small GTP-binding protein [Ignicoccus hospitalis KIN4/I] Length = 671 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 40/81 (49%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 Y I ++G N GKS+ N L K V+ V + PG T D+ I ++ +G V I D G+ Sbjct: 3 YSIAVVGQPNVGKSTFINVLIGKYVSEVANWPGVTVDIKIIKIEYDGKEVCIYDFPGMYS 62 Query: 280 TDDIVEKEGIKRTFLEVENAD 300 + E+E I E+ D Sbjct: 63 LNPTSEEERIAAERFVTEDFD 83 >gi|126699770|ref|YP_001088667.1| putative ATP/GTP-binding protein [Clostridium difficile 630] gi|255101290|ref|ZP_05330267.1| putative ATP/GTP-binding protein [Clostridium difficile QCD-63q42] gi|255307166|ref|ZP_05351337.1| putative ATP/GTP-binding protein [Clostridium difficile ATCC 43255] gi|115251207|emb|CAJ69038.1| putative ATP/GTP-binding protein [Clostridium difficile] Length = 402 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 53/169 (31%), Positives = 83/169 (49%), Gaps = 25/169 (14%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDTAGIRE 279 I + G NAGKSS+ NA+ + AIV+DI GTT D + +++ G V I DTAG+ + Sbjct: 14 IGLFGKRNAGKSSIINAITNQSAAIVSDIAGTTTDPVFRPMEILPIGPCVLI-DTAGLDD 72 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISF-----PKNIDFIFIGTKSDL 331 ++ E I ++ +E D+ LL+ + S++++S KNI I I K D Sbjct: 73 VGELGELR-IGKSLDVLEKTDIALLVVDCQIGISQEDLSLIEKFNDKNIPHILILNKIDT 131 Query: 332 YSTYTEEYDHL----------ISSFTGEGLEELINKIKSIL---SNKFK 367 +E + +SS G+E L N+I +L S +FK Sbjct: 132 IKNQSEILNLTKNKVKCPVVSVSSTDKIGIENLKNEIIKVLPKDSTEFK 180 >gi|332653030|ref|ZP_08418775.1| ribosome biogenesis GTP-binding protein YlqF [Ruminococcaceae bacterium D16] gi|332518176|gb|EGJ47779.1| ribosome biogenesis GTP-binding protein YlqF [Ruminococcaceae bacterium D16] Length = 292 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 19/122 (15%) Query: 158 YGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIR 217 +G+W K R + D + V FS+ V+ ++L K+ I+ +G +G +R Sbjct: 71 WGEWFRK----RGCSVLETDAKTGKGVGQFSA--VVQNVL--KDQIARWQERGLVGRPVR 122 Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DVLTIDLDLEGYLVKISDTA 275 +I+G N GKS+ N +AK+ A D PG TR +T+D LE + DT Sbjct: 123 ----AMIVGVPNVGKSTFINKVAKRKTAKAGDRPGVTRGKQWVTVDRGLE-----LLDTP 173 Query: 276 GI 277 GI Sbjct: 174 GI 175 >gi|325662531|ref|ZP_08151134.1| hypothetical protein HMPREF0490_01874 [Lachnospiraceae bacterium 4_1_37FAA] gi|325471227|gb|EGC74452.1| hypothetical protein HMPREF0490_01874 [Lachnospiraceae bacterium 4_1_37FAA] Length = 405 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 32/86 (37%), Positives = 52/86 (60%), Gaps = 4/86 (4%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTAGIRE 279 I I G NAGKSSL NAL +++AIV+DI GTT D + ++L G +V I DT G+ + Sbjct: 14 IGIFGKRNAGKSSLINALTGQNLAIVSDIKGTTTDPVLKSMELLPLGPVVLI-DTPGLDD 72 Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305 + + +++T+ + D+ +L+ Sbjct: 73 HGPLGDLR-VQKTYQMLNKTDIAILV 97 >gi|300770940|ref|ZP_07080817.1| GTP-binding protein Era [Sphingobacterium spiritivorum ATCC 33861] gi|300762213|gb|EFK59032.1| GTP-binding protein Era [Sphingobacterium spiritivorum ATCC 33861] Length = 292 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 52/90 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G NAGKS+L NAL + ++I+T TTR + ++ E + + SDT G+ + + Sbjct: 8 VSIIGKPNAGKSTLMNALVGEKMSIITPKAQTTRHRIMGIVNDENHQIVFSDTPGVIKPN 67 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK 311 +++ + + +AD+IL + +IN K Sbjct: 68 YSLQESMMNFVQGSLIDADIILFVTDINEK 97 >gi|73667167|ref|YP_303183.1| GTP-binding protein Era [Ehrlichia canis str. Jake] gi|123614857|sp|Q3YRS0|ERA_EHRCJ RecName: Full=GTPase Era gi|72394308|gb|AAZ68585.1| Small GTP-binding protein domain:GTP-binding protein Era [Ehrlichia canis str. Jake] Length = 296 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 46/154 (29%), Positives = 71/154 (46%), Gaps = 21/154 (13%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 I+G +NAGKS+L N L + VA VT TTR + L+ E + DT GI Sbjct: 13 IVGTTNAGKSTLINMLVGRKVAAVTPKVQTTRVRMHAVLNNENVQLIFIDTPGIFSPKTK 72 Query: 284 VEKEGIKRTFLEVENADLILLLKEINS------KKEISFPK--NIDFIFIGTKSD----- 330 +EK +K ++ ++ + ++LL ++ + +K IS K NI+ I + K D Sbjct: 73 LEKFIVKHAWMSLKGIENVILLLDVKNYLNKHIEKIISRIKQSNINAILVVNKIDMVSQA 132 Query: 331 --------LYSTYTEEYDHLISSFTGEGLEELIN 356 +YS + IS+ GL LIN Sbjct: 133 LVDKAIEYMYSLHNFSKTFTISALHDIGLNRLIN 166 >gi|302335736|ref|YP_003800943.1| GTP-binding protein HflX [Olsenella uli DSM 7084] gi|301319576|gb|ADK68063.1| GTP-binding protein HflX [Olsenella uli DSM 7084] Length = 432 Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust. Identities = 36/105 (34%), Positives = 54/105 (51%), Gaps = 5/105 (4%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIR 278 +++ + G++NAGKS+L N L A V D T D T + L+ G V ++DT G Sbjct: 210 FRVALAGYTNAGKSTLLNRLTGAG-AYVKDELFATLDPTTRSMVLDAGRKVTVTDTVGFI 268 Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISFPKNI 320 + E K T EV ADL+LL+ + N +KEI+ + I Sbjct: 269 QKLPTTLVESFKSTLAEVMAADLVLLVADASDGNVRKEIAAVRRI 313 >gi|169629458|ref|YP_001703107.1| GTP-binding protein EngA [Mycobacterium abscessus ATCC 19977] gi|169241425|emb|CAM62453.1| Probable GTP-binding protein EngA [Mycobacterium abscessus] Length = 466 Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 34/58 (58%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 ++ ++G N GKSSL N L+ A+V D GTT D + ++L G + DTAG+R Sbjct: 205 RVALVGKPNVGKSSLLNRLSGDQRAVVHDTAGTTVDPVDTLIELGGKTWRFVDTAGLR 262 Score = 40.8 bits (94), Expect = 0.47, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 40/80 (50%) Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVE 285 G N GKS+L N + + A+V DIPG TRD ++ + + DT G ++ Sbjct: 37 GRPNVGKSTLVNRIIGRREAVVQDIPGVTRDRVSYPAEWLDRRFTVQDTGGWEADATGLQ 96 Query: 286 KEGIKRTFLEVENADLILLL 305 + ++ + ADLI+L+ Sbjct: 97 QLVAEQARHAMATADLIILV 116 >gi|15643211|ref|NP_228255.1| hypothetical protein TM0445 [Thermotoga maritima MSB8] gi|4980952|gb|AAD35530.1|AE001722_14 conserved hypothetical protein [Thermotoga maritima MSB8] Length = 404 Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 82/171 (47%), Gaps = 26/171 (15%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280 IV+ G N GKSS NAL ++V+IV++ GTT D + ++L V + DT G+ + Sbjct: 12 IVVAGRRNVGKSSFMNALVGQNVSIVSEYAGTTTDPVYKSMELYPVGPVTLVDTPGLDDV 71 Query: 281 DDI--VEKEGIKRTFLEVENA-------------DLILLLKEINSKKEISFPKNIDFI-F 324 ++ + E +R F + D++ L KE+ EI F ++ I Sbjct: 72 GELGRLRVEKARRVFYRADCGILVTDSEPTPYEDDVVNLFKEM----EIPFVVVVNKIDV 127 Query: 325 IGTKSD----LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371 +G K++ LY + E L+S+ +G +++ I IL +++P+ Sbjct: 128 LGEKAEELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEILPGD-EEIPY 177 >gi|301091319|ref|XP_002895847.1| guanine nucleotide-binding protein [Phytophthora infestans T30-4] gi|262096558|gb|EEY54610.1| guanine nucleotide-binding protein [Phytophthora infestans T30-4] Length = 631 Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 3/77 (3%) Query: 201 NDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260 D S S G +G+ I ++GH N GKSS+ NALA K + V+ PG T+ + TI Sbjct: 486 TDPSVPGSAGAIGQANTPKVTIGLIGHPNVGKSSVLNALAGKKIVSVSHTPGHTKRLQTI 545 Query: 261 DLDLEGYLVKISDTAGI 277 + E + I D G+ Sbjct: 546 MISPE---ICICDCPGL 559 >gi|299139980|ref|ZP_07033150.1| GTP-binding protein Era [Acidobacterium sp. MP5ACTX8] gi|298597980|gb|EFI54148.1| GTP-binding protein Era [Acidobacterium sp. MP5ACTX8] Length = 384 Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust. Identities = 30/108 (27%), Positives = 56/108 (51%), Gaps = 13/108 (12%) Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL----------- 264 +R+G+ I I+G NAGKS+L NAL + +AIVT P TTR + L+L Sbjct: 3 LRSGF-ISIIGRPNAGKSTLLNALLGQKLAIVTHKPQTTRTRIQGVLELPVRKKTKTDGG 61 Query: 265 -EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311 + + DT G+ + + ++K ++ +E+ D++ + ++ + Sbjct: 62 RPASQIVLVDTPGVHKPETQLDKRMMQEVHDALESRDVVWFIVDVTHR 109 >gi|295399932|ref|ZP_06809913.1| GTP-binding proten HflX [Geobacillus thermoglucosidasius C56-YS93] gi|294978335|gb|EFG53932.1| GTP-binding proten HflX [Geobacillus thermoglucosidasius C56-YS93] Length = 413 Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 2/85 (2%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIR 278 ++I ++G++NAGKS+LFN L D + ++ T D LT + L GY V ++DT G Sbjct: 197 FQISLVGYTNAGKSTLFNRLTDAD-SFEENLLFATLDPLTRKMTLPSGYTVLLTDTVGFI 255 Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303 + + T EV+ ADLIL Sbjct: 256 QDLPTTLVAAFRSTLEEVKEADLIL 280 >gi|197303325|ref|ZP_03168365.1| hypothetical protein RUMLAC_02048 [Ruminococcus lactaris ATCC 29176] gi|197297609|gb|EDY32169.1| hypothetical protein RUMLAC_02048 [Ruminococcus lactaris ATCC 29176] Length = 300 Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust. Identities = 44/176 (25%), Positives = 78/176 (44%), Gaps = 30/176 (17%) Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 + E ++G+ + ++G N GKS+L N L + +AI ++ P TTR+ + L E + Sbjct: 1 MKENFKSGF-VTLIGRPNVGKSTLMNHLIGQKIAITSNKPQTTRNRIQTVLTTEEGQIVF 59 Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------------INSKKEISFPKN 319 DT GI + + + + + + D++L L E I K++ P Sbjct: 60 VDTPGIHKAKNKLGEYMVNIAERSLNEVDVVLWLVEPSNFIGAGEKHIIEQLKKVKTP-- 117 Query: 320 IDFIFIGTKSDLYS---------TYTEEYDHL----ISSFTGEGLEELINKIKSIL 362 I + K D+ TY +EYD +S+ TG+ +EL+ I + L Sbjct: 118 --VILVINKIDMVKREEILAFIDTYRKEYDFAEIVPVSARTGDNTDELVKVILNYL 171 >gi|119898411|ref|YP_933624.1| GTPase [Azoarcus sp. BH72] gi|119670824|emb|CAL94737.1| probable GTPase [Azoarcus sp. BH72] Length = 291 Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 37/57 (64%), Gaps = 3/57 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 +++I+G N GKS++ NAL K+ VA V D P T+ + T+DL G + ++DT G+ Sbjct: 109 RMMIMGIPNVGKSTIMNALLKRKVAAVGDEPAVTKQLQTLDL---GPGMTLTDTPGL 162 >gi|20092422|ref|NP_618497.1| GTP-binding protein [Methanosarcina acetivorans C2A] gi|19917678|gb|AAM06977.1| GTP-binding protein [Methanosarcina acetivorans C2A] Length = 353 Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust. Identities = 37/107 (34%), Positives = 55/107 (51%), Gaps = 10/107 (9%) Query: 217 RNGYKIV-ILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKI 271 R G+ +V G++NAGKS+LFNA+ + V + T + TTR LDL G + Sbjct: 123 RKGFSLVSFAGYTNAGKSTLFNAIVDESVEAQDKLFTTLVPTTR-----ALDLGGRKALL 177 Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK 318 +DT G E + K T E+ +DLILL+ +++ K E K Sbjct: 178 TDTVGFIEELPHWLVDAFKSTLDEIFLSDLILLVVDVSEKPETILQK 224 >gi|314966861|gb|EFT10960.1| GTP-binding protein Era [Propionibacterium acnes HL082PA2] gi|315093218|gb|EFT65194.1| GTP-binding protein Era [Propionibacterium acnes HL060PA1] gi|327327686|gb|EGE69462.1| GTP-binding protein Era [Propionibacterium acnes HL103PA1] Length = 342 Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust. Identities = 45/192 (23%), Positives = 82/192 (42%), Gaps = 27/192 (14%) Query: 210 GKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266 ++ E R G+ + +G NAGKS+L NAL +AI + P TTR V+ + E Sbjct: 30 ARVAESTRAGFHSGFVCFVGRPNAGKSTLTNALVGSKIAIASSKPQTTRHVIRGVVTDEK 89 Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEIS-F 316 + + DT G+ + ++ + F D+I + N + +I+ Sbjct: 90 SQIVVIDTPGLHKPRTLLGQRLNDLVFDTWTQVDVIGVCLPSNQRIGPGDTYLVSQIAEL 149 Query: 317 PKNIDFIFIGTKSDLYS-TYTEEYDHLISSFTGE-GLE------------ELINKIKSIL 362 P+ + + TKSDL S E+ I GE G+E E +++++ ++ Sbjct: 150 PRRPTLVALATKSDLVSKARMAEHLATIDKLQGEVGIEFVEIVPCSAVSGEQVDEVRDVI 209 Query: 363 SNKFKKLPFSIP 374 ++ + P P Sbjct: 210 ASLLPEGPAYYP 221 >gi|312111545|ref|YP_003989861.1| GTP-binding proten HflX [Geobacillus sp. Y4.1MC1] gi|311216646|gb|ADP75250.1| GTP-binding proten HflX [Geobacillus sp. Y4.1MC1] Length = 413 Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 2/85 (2%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIR 278 ++I ++G++NAGKS+LFN L D + ++ T D LT + L GY V ++DT G Sbjct: 197 FQISLVGYTNAGKSTLFNRLTDAD-SFEENLLFATLDPLTRKMTLPSGYTVLLTDTVGFI 255 Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303 + + T EV+ ADLIL Sbjct: 256 QDLPTTLVAAFRSTLEEVKEADLIL 280 >gi|282849486|ref|ZP_06258870.1| small GTP-binding protein domain protein [Veillonella parvula ATCC 17745] gi|282580423|gb|EFB85822.1| small GTP-binding protein domain protein [Veillonella parvula ATCC 17745] Length = 456 Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 1/67 (1%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAG 276 N I G NAGKS+L N L + V++V+D+ GTT D ++ ++ L V I+DTAG Sbjct: 8 NRIHIGFFGRCNAGKSTLINMLTDQPVSLVSDVAGTTTDPVSKSMEILPLGPVVITDTAG 67 Query: 277 IRETDDI 283 I +T ++ Sbjct: 68 IDDTTEL 74 >gi|110639447|ref|YP_679656.1| GTP-binding protein Era [Cytophaga hutchinsonii ATCC 33406] gi|110282128|gb|ABG60314.1| GTP-binding protein [Cytophaga hutchinsonii ATCC 33406] Length = 298 Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 68/135 (50%), Gaps = 10/135 (7%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRET 280 + I+G NAGKS+L N L + ++I+T TTR V+ I D E +V SDT G+ E Sbjct: 12 VSIIGRPNAGKSTLMNCLVGERLSIITPKAQTTRHRVMGIINDPEFQIV-YSDTPGVIEP 70 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN------IDFIFIGTKSDLYST 334 ++K ++ +E+AD+IL + ++ ++ + + + + K DL + Sbjct: 71 KYELQKSMMRFVDFSLEDADMILWVLDVKDPEDHALVLQRLNNVEVPVLLVLNKIDL--S 128 Query: 335 YTEEYDHLISSFTGE 349 EE D L+ + E Sbjct: 129 TQEEIDALVEKWKAE 143 >gi|261402146|ref|YP_003246370.1| small GTP-binding protein [Methanocaldococcus vulcanius M7] gi|261369139|gb|ACX71888.1| small GTP-binding protein [Methanocaldococcus vulcanius M7] Length = 183 Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust. Identities = 36/104 (34%), Positives = 51/104 (49%), Gaps = 26/104 (25%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-------------------- 259 +KI I+G N GKSS+ NAL K V++V+++ GTT+ + Sbjct: 4 FKIAIVGAENVGKSSIMNALFGKHVSMVSEVAGTTKMPIKKYWGKFKIGRVKEEPEFAKL 63 Query: 260 IDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303 I +DL G K SD+ T I+EK TF E+ AD+IL Sbjct: 64 IFVDLGGLYAK-SDSQSPIMTPKILEK-----TFKEINEADMIL 101 >gi|87302572|ref|ZP_01085389.1| ferrous iron transport protein B [Synechococcus sp. WH 5701] gi|87282916|gb|EAQ74873.1| ferrous iron transport protein B [Synechococcus sp. WH 5701] Length = 602 Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust. Identities = 41/161 (25%), Positives = 68/161 (42%), Gaps = 21/161 (13%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTA 275 + ++ +LG N GKS+L+N L A V + PG T ++L ++ D G + D Sbjct: 5 SAVQVALLGLPNTGKSTLYNKLTGGH-AHVANWPGLTVELLRGSLPADAAGRPYDLIDLP 63 Query: 276 GIRETDDIVEKEGIKRTFLEVENADL-ILLLKEINSKKEISF-----PKNIDFIFIGTKS 329 GI + E E + R FL DL +++L ++ ++ + I Sbjct: 64 GIHDLRGSSEDEAVVRRFLSATRPDLAVVVLNASHADTQLRLALELQATGLPLILALNMG 123 Query: 330 DLYSTYTEEYDH------------LISSFTGEGLEELINKI 358 D Y DH +IS+ GEGL+ L+ +I Sbjct: 124 DEAQRYGVRIDHQRLAADLGLPVLVISARRGEGLDTLLERI 164 >gi|331268843|ref|YP_004395335.1| GTP-binding protein [Clostridium botulinum BKT015925] gi|329125393|gb|AEB75338.1| GTP-binding protein [Clostridium botulinum BKT015925] Length = 397 Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust. Identities = 28/94 (29%), Positives = 56/94 (59%), Gaps = 2/94 (2%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276 N +V G +N+GKSS+ NA+ +++++V++I GTT D ++ ++L + V DTAG Sbjct: 8 NRKHVVFYGKTNSGKSSILNAIVGQEISLVSNIKGTTTDPVSKAMELIPFGPVLFIDTAG 67 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310 I + ++ ++RT ++ D + + +IN+ Sbjct: 68 IDDKSELGNLR-VERTLKTLKKTDFAVYVMDINN 100 >gi|117923594|ref|YP_864211.1| GTP-binding protein, HSR1-related [Magnetococcus sp. MC-1] gi|117607350|gb|ABK42805.1| GTP-binding protein, HSR1-related protein [Magnetococcus sp. MC-1] Length = 432 Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust. Identities = 57/229 (24%), Positives = 106/229 (46%), Gaps = 30/229 (13%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAG-I 277 + + ++G++NAGKS+LFN L + V + D T D +DL +G + +SDT G I Sbjct: 202 FTVALVGYTNAGKSTLFNLLTRAGV-LAEDKLFATLDPTMRAVDLPDGGRILLSDTVGFI 260 Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT- 336 R+ + K T EV +AD++L + +++ + + ++++ + + T T Sbjct: 261 RQLPHQL-VAAFKATLEEVMSADMLLHVVDLSDPEWERYVESVNGVLQELEVQHTRTLTV 319 Query: 337 -EEYDHL-----------------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP-SHK 377 + D L +S+ TGEG+E L+++++ + + +P S Sbjct: 320 YNKIDRLESRGILERELARGDTIGVSAQTGEGVEPLLSELRRAVGRAMLRYEVILPVSDG 379 Query: 378 RHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVE 426 R L ++ AS+ E G D + LA LG++ G V+ E Sbjct: 380 RWL------AKFHAEASVVEVREGEDFTTLIVELAPAVLGRLQGEVERE 422 >gi|294792411|ref|ZP_06757558.1| GTP-binding protein [Veillonella sp. 6_1_27] gi|294456310|gb|EFG24673.1| GTP-binding protein [Veillonella sp. 6_1_27] Length = 421 Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 1/67 (1%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAG 276 N I G NAGKS+L N L + V++V+D+ GTT D ++ ++ L V I+DTAG Sbjct: 8 NRIHIGFFGRCNAGKSTLINMLTDQPVSLVSDVAGTTTDPVSKAMEILPLGPVVITDTAG 67 Query: 277 IRETDDI 283 I +T ++ Sbjct: 68 IDDTTEL 74 >gi|332294983|ref|YP_004436906.1| ribosome-associated GTPase EngA [Thermodesulfobium narugense DSM 14796] gi|332178086|gb|AEE13775.1| ribosome-associated GTPase EngA [Thermodesulfobium narugense DSM 14796] Length = 425 Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust. Identities = 18/35 (51%), Positives = 27/35 (77%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 +V+ G +N GKS+LFN L K+ ++V+ +PGTTRD Sbjct: 7 VVLAGRANVGKSTLFNRLLKQSYSMVSSVPGTTRD 41 Score = 40.8 bits (94), Expect = 0.44, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 33/56 (58%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 I G N GKSSL NA+ +++ IV+D GTTR+V+ G + D+AGI+ Sbjct: 175 IFGAPNVGKSSLANAILEEERFIVSDFAGTTREVVAKSFRRLGKSWLLLDSAGIKR 230 >gi|315122354|ref|YP_004062843.1| GTP-binding protein Era [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495756|gb|ADR52355.1| GTP-binding protein Era [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 310 Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust. Identities = 28/88 (31%), Positives = 48/88 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G +NAGKS+L N V+IVT TTR ++ + + V DT GI + Sbjct: 23 VALVGATNAGKSTLVNKFVGAKVSIVTHKVQTTRSIVRGIVSEKDVQVVFLDTPGIFKAK 82 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN 309 D K I+ ++ V++AD++ L+ + N Sbjct: 83 DSYHKMMIRLSWSTVKHADIVFLVIDSN 110 >gi|297584121|ref|YP_003699901.1| GTP-binding proten HflX [Bacillus selenitireducens MLS10] gi|297142578|gb|ADH99335.1| GTP-binding proten HflX [Bacillus selenitireducens MLS10] Length = 419 Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust. Identities = 42/183 (22%), Positives = 87/183 (47%), Gaps = 21/183 (11%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAG 276 ++I ++G++NAGKS+L N L++ DV +V D T D T + L +G V +SDT G Sbjct: 198 QAFQIALVGYTNAGKSTLLNRLSQADV-MVEDQLFATLDPTTKKIRLPKGMDVLLSDTVG 256 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF------------ 324 + + T EV AD I+ + + + + ++ ++++ + Sbjct: 257 FIQQLPTTLIAAFRSTLEEVTGADFIVHVVDASHEDAVNHEESVNRLLDDLDAQHIPRLT 316 Query: 325 IGTKSDL-----YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379 + K DL ++ T L+S+ + + ++ +NK++ + + F S+ +++ Sbjct: 317 VYNKRDLIQGDFFALSTPSL--LLSTMSDDDIQRFLNKLEQTIEDAFVPYQVSVQAYEGK 374 Query: 380 LYH 382 L H Sbjct: 375 LLH 377 >gi|145594473|ref|YP_001158770.1| small GTP-binding protein [Salinispora tropica CNB-440] gi|189037159|sp|A4X692|DER_SALTO RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|145303810|gb|ABP54392.1| small GTP-binding protein [Salinispora tropica CNB-440] Length = 467 Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 27/51 (52%) Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 G N GKS+L N L + A+V D+PG TRD + D G + DT G Sbjct: 31 GRPNVGKSTLVNRLIGRRQAVVEDVPGVTRDRVPYDAQWNGRQFAVVDTGG 81 Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust. Identities = 27/94 (28%), Positives = 51/94 (54%), Gaps = 7/94 (7%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R ++ ++G N GKSSL N + + A+V + GTT D + +++ G ++ DTAG Sbjct: 196 RGPRRVALVGRPNVGKSSLLNRFSGEIRAVVDAVAGTTVDPVDSLVEIGGEAWQLVDTAG 255 Query: 277 IRETDDIVEKEGIK-----RTFLEVENADLILLL 305 +R+ + + G + RT +E A++ ++L Sbjct: 256 LRKR--VGQASGTEYYASLRTTSAIEAAEVAVVL 287 >gi|148269615|ref|YP_001244075.1| small GTP-binding protein [Thermotoga petrophila RKU-1] gi|170288291|ref|YP_001738529.1| small GTP-binding protein [Thermotoga sp. RQ2] gi|147735159|gb|ABQ46499.1| small GTP-binding protein [Thermotoga petrophila RKU-1] gi|170175794|gb|ACB08846.1| small GTP-binding protein [Thermotoga sp. RQ2] Length = 404 Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 82/171 (47%), Gaps = 26/171 (15%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280 IV+ G N GKSS NAL ++V+IV++ GTT D + ++L V + DT G+ + Sbjct: 12 IVVAGRRNVGKSSFMNALVGQNVSIVSEYAGTTTDPVYKSMELYPVGPVTLVDTPGLDDV 71 Query: 281 DDI--VEKEGIKRTFLEVENA-------------DLILLLKEINSKKEISFPKNIDFI-F 324 ++ + E +R F + D++ L KE+ EI F ++ I Sbjct: 72 GELGRLRVEKARRVFYRADCGILVTDSEPTPYEDDVVNLFKEM----EIPFVVVVNKIDV 127 Query: 325 IGTKSD----LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371 +G K++ LY + E L+S+ +G +++ I IL +++P+ Sbjct: 128 LGEKAEELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEILPGD-EEIPY 177 >gi|268680203|ref|YP_003304634.1| ferrous iron transporter B [Sulfurospirillum deleyianum DSM 6946] gi|268618234|gb|ACZ12599.1| ferrous iron transport protein B [Sulfurospirillum deleyianum DSM 6946] Length = 698 Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 1/84 (1%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 + I ++G N GKS L NA+A + V + G T + + +G+ +KI D G Sbjct: 4 FVIALVGQPNVGKSMLINAIADARLR-VGNFSGVTVEKAEVRFVAQGHSIKIVDLPGTYS 62 Query: 280 TDDIVEKEGIKRTFLEVENADLIL 303 +D + E + + FLE E DLI+ Sbjct: 63 LNDYTQDERVTKEFLENEPYDLII 86 >gi|262202148|ref|YP_003273356.1| GTP-binding proten HflX [Gordonia bronchialis DSM 43247] gi|262085495|gb|ACY21463.1| GTP-binding proten HflX [Gordonia bronchialis DSM 43247] Length = 484 Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 79/182 (43%), Gaps = 34/182 (18%) Query: 222 IVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 I + G++NAGKSSL NA+ V A+ + TTR T+D +G V +DT G Sbjct: 261 ITVAGYTNAGKSSLVNAMTGSGVLVQDALFATLDPTTRRA-TLD---DGRAVVFTDTVGF 316 Query: 278 RETDDIVEKEGIKRTFLEVENADLIL-------------------LLKEINSKKEISFP- 317 E + T EV +ADL+L ++ EI ++++ P Sbjct: 317 VRHLPTQLVEAFRSTLEEVVDADLLLHVVDGSDPFPAEQIAAVRRVVNEIVAEEKADAPP 376 Query: 318 -----KNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372 ID I ++L + +S+ TGEGL EL ++I+ + +L + Sbjct: 377 EMLVINKIDAIDATRLTELRGALGADA-VFVSARTGEGLPELFDRIREFVGRSDVELTIA 435 Query: 373 IP 374 +P Sbjct: 436 VP 437 >gi|328955430|ref|YP_004372763.1| GTP-binding protein Era [Coriobacterium glomerans PW2] gi|328455754|gb|AEB06948.1| GTP-binding protein Era [Coriobacterium glomerans PW2] Length = 324 Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust. Identities = 26/83 (31%), Positives = 46/83 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G NAGKS+L NA+ K +AI +++ TTR L ++ G + DT G+ + Sbjct: 36 VALVGRPNAGKSTLLNAIFGKKIAITSNVVQTTRRRLRAVVNRPGCQIVFVDTPGLHKPQ 95 Query: 282 DIVEKEGIKRTFLEVENADLILL 304 D + +E K E+ + D++ L Sbjct: 96 DSLGRELNKGALAELVDVDVVAL 118 >gi|189345893|ref|YP_001942422.1| GTP-binding protein Era [Chlorobium limicola DSM 245] gi|189340040|gb|ACD89443.1| GTP-binding protein Era [Chlorobium limicola DSM 245] Length = 305 Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust. Identities = 49/195 (25%), Positives = 76/195 (38%), Gaps = 32/195 (16%) Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282 VI G NAGKS+L N L ++IVT P TTR +T + DT GI + Sbjct: 12 VIAGQPNAGKSTLLNKLLDYKLSIVTPKPQTTRKKITGIYHDNRRQIIFLDTPGIMQPQQ 71 Query: 283 IVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDF----------------IFIG 326 + + + T +E AD++ L E P ++DF I + Sbjct: 72 KLHESMLAITRRTLEEADVVTALIPYTKGSE---PYDLDFTAELFNAWLKPAGKPVIAVL 128 Query: 327 TKSDLYSTYTEEYDH-------------LISSFTGEGLEELINKIKSILSNKFKKLPFSI 373 KSD+ S +E +S+ G GLE+L+ + L P + Sbjct: 129 NKSDIVSRAVQEKAESVMTQLFSPAAVISVSALEGTGLEKLVEALTPFLPMDEPLYPEDM 188 Query: 374 PSHKRHLYHLSQTVR 388 S + +S+ +R Sbjct: 189 LSTAPERFFVSEIIR 203 >gi|227537544|ref|ZP_03967593.1| GTP-binding protein Era [Sphingobacterium spiritivorum ATCC 33300] gi|227242596|gb|EEI92611.1| GTP-binding protein Era [Sphingobacterium spiritivorum ATCC 33300] Length = 292 Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 52/90 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G NAGKS+L NAL + ++I+T TTR + ++ E + + SDT G+ + + Sbjct: 8 VSIIGKPNAGKSTLMNALVGEKMSIITPKAQTTRHRIIGIVNDENHQIVFSDTPGVIKPN 67 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK 311 +++ + + +AD+IL + +IN K Sbjct: 68 YSLQESMMNFVQGSLIDADIILFVTDINEK 97 >gi|222055248|ref|YP_002537610.1| GTP-binding protein Era [Geobacter sp. FRC-32] gi|259645945|sp|B9M913|ERA_GEOSF RecName: Full=GTPase Era gi|221564537|gb|ACM20509.1| GTP-binding protein Era [Geobacter sp. FRC-32] Length = 297 Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 44/90 (48%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+L N + + I +D P TTR+ + +L G + DT GI Sbjct: 11 VSIIGRPNVGKSTLLNKILGDKIVITSDKPQTTRNRIQGIHNLPGCQIVFIDTPGIHRAK 70 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK 311 + K + ++ D+IL L E ++K Sbjct: 71 SRLNKYMVDVALSSIKEVDVILFLVEADTK 100 >gi|254975750|ref|ZP_05272222.1| putative ATP/GTP-binding protein [Clostridium difficile QCD-66c26] gi|255093137|ref|ZP_05322615.1| putative ATP/GTP-binding protein [Clostridium difficile CIP 107932] gi|255314879|ref|ZP_05356462.1| putative ATP/GTP-binding protein [Clostridium difficile QCD-76w55] gi|255517553|ref|ZP_05385229.1| putative ATP/GTP-binding protein [Clostridium difficile QCD-97b34] gi|255650664|ref|ZP_05397566.1| putative ATP/GTP-binding protein [Clostridium difficile QCD-37x79] gi|260683753|ref|YP_003215038.1| putative ATP/GTP-binding protein [Clostridium difficile CD196] gi|260687413|ref|YP_003218547.1| putative ATP/GTP-binding protein [Clostridium difficile R20291] gi|306520592|ref|ZP_07406939.1| putative ATP/GTP-binding protein [Clostridium difficile QCD-32g58] gi|260209916|emb|CBA63870.1| putative ATP/GTP-binding protein [Clostridium difficile CD196] gi|260213430|emb|CBE05089.1| putative ATP/GTP-binding protein [Clostridium difficile R20291] Length = 402 Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust. Identities = 53/169 (31%), Positives = 83/169 (49%), Gaps = 25/169 (14%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDTAGIRE 279 I + G NAGKSS+ NA+ + AIV+DI GTT D + +++ G V I DTAG+ + Sbjct: 14 IGLFGKRNAGKSSIINAITNQSAAIVSDIAGTTTDPVFRPMEILPIGPCVLI-DTAGLDD 72 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISF-----PKNIDFIFIGTKSDL 331 ++ E I ++ +E D+ LL+ + S++++S KNI I I K D Sbjct: 73 VGELGELR-IGKSLDVLEKTDIALLVVDCQIGISQEDLSLIEKFNDKNIPHILILNKIDT 131 Query: 332 YSTYTEEYDHL----------ISSFTGEGLEELINKIKSIL---SNKFK 367 +E + +SS G+E L N+I +L S +FK Sbjct: 132 IKNQSEILNLTKNKVKCPVVSVSSTDKIGIENLKNEIIKVLPKDSTEFK 180 >gi|148224844|ref|NP_001086258.1| RAS-like, estrogen-regulated, growth inhibitor [Xenopus laevis] gi|49256313|gb|AAH74392.1| MGC84355 protein [Xenopus laevis] Length = 199 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 50/158 (31%), Positives = 68/158 (43%), Gaps = 39/158 (24%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTD--IPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 KI I G + GKS+L K D + T R TID DL +++ DTAG Sbjct: 8 KIAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDDL--VTMELLDTAG-- 63 Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSK-------------KEISFPKNIDFIFI 325 +DI+++EG R AD ++ +I K EI PKN+ FI + Sbjct: 64 -QEDIIQREGHARW------ADGFAIVYDITDKGSFDEVLPFKNLLDEIKKPKNVTFILV 116 Query: 326 GTKSDL---YSTYTEEYDHL----------ISSFTGEG 350 G K+DL TEE + L S+ TGEG Sbjct: 117 GNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEG 154 >gi|325295030|ref|YP_004281544.1| GTP-binding protein Era-like-protein [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065478|gb|ADY73485.1| GTP-binding protein Era-like-protein [Desulfurobacterium thermolithotrophum DSM 11699] Length = 306 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 34/97 (35%), Positives = 50/97 (51%), Gaps = 1/97 (1%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273 E ++GY + ILG N GKS+L N+ VAIVTD P TTR + L+ + D Sbjct: 6 EKFKSGY-VAILGRPNVGKSTLLNSFLGTKVAIVTDKPQTTRHRIIGVKHLKDAQIVFLD 64 Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310 T GI + + + + F + +AD+IL L + S Sbjct: 65 TPGIHKEKFELNRYMNEIAFGVIPDADIILFLIDARS 101 >gi|109947419|ref|YP_664647.1| ferrous iron transport protein B [Helicobacter acinonychis str. Sheeba] gi|109714640|emb|CAJ99648.1| ferrous iron transport protein B [Helicobacter acinonychis str. Sheeba] Length = 642 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKSSL NAL+ + V + G T D + + L + + + I D G + Sbjct: 6 IALVGQPNVGKSSLINALSNAHLK-VGNFAGVTVDKMEVSLVHKEHQITIIDLPGTYALN 64 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 D +E + + FLE DLIL Sbjct: 65 DFTTEEKVTKDFLEKGQYDLIL 86 >gi|302874975|ref|YP_003843608.1| GTP-binding proten HflX [Clostridium cellulovorans 743B] gi|307690408|ref|ZP_07632854.1| GTP-binding proten HflX [Clostridium cellulovorans 743B] gi|302577832|gb|ADL51844.1| GTP-binding proten HflX [Clostridium cellulovorans 743B] Length = 599 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 63/197 (31%), Positives = 90/197 (45%), Gaps = 49/197 (24%) Query: 218 NGYKIVILGHSNAGKSSLFNALA---------KKDVAIVTDIPGTTRDVLTIDLDL-EGY 267 N KI ++G++NAGKS+L NALA +KD D+ T DV T + L + Sbjct: 364 NVPKISLVGYTNAGKSTLRNALAEYALVEQGKQKDKVFEADMLFATLDVTTRAILLRDKR 423 Query: 268 LVKISDTAG-IRE-TDDIVEKEGIKRTFLEVENADLIL-------------------LLK 306 + ++DT G IR+ + D+V E K T EV ADL+L +LK Sbjct: 424 VAALTDTVGFIRKLSHDLV--EAFKSTLEEVIFADLLLHVVDSSSDIIFEQIEATHAVLK 481 Query: 307 EINSKKEISFPKNIDFIFIGTKSDLYSTYT-----EEYDHL----ISSFTGEGLEELINK 357 E+N +F K I I + K D + +T E+Y IS+ G + L+ Sbjct: 482 ELN-----AFDKPI--ILVLNKVDKENAHTVAEIKEKYKEFQVIPISAKNGTNFDGLMEM 534 Query: 358 IKSILSNKFKKLPFSIP 374 I L N KK+ F IP Sbjct: 535 IVEFLPNPMKKVEFLIP 551 >gi|149914878|ref|ZP_01903407.1| 30S ribosomal protein S2 [Roseobacter sp. AzwK-3b] gi|149811066|gb|EDM70903.1| 30S ribosomal protein S2 [Roseobacter sp. AzwK-3b] Length = 425 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 43/172 (25%), Positives = 81/172 (47%), Gaps = 26/172 (15%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD--VLTIDLDLEGYLVKISDTAGIRE 279 + ++G++NAGKS+LFN + DV + D+ T D + I+L G V +SDT G Sbjct: 206 VALVGYTNAGKSTLFNRMTGADV-MAKDMLFATLDPTMRRIELPGGGPEVILSDTVGFIS 264 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF--IGTKSDLYS---- 333 + T EV ADLI+ +++I+ + + +++ I +G + + Sbjct: 265 DLPTELVAAFRATLEEVLAADLIVHVRDISHPESEAQARDVRTILESLGVRDSIPQIEVW 324 Query: 334 ---------------TYTEEYDHL--ISSFTGEGLEELINKIKSILSNKFKK 368 T ++H+ +S+ TGEG+ EL+ I S +++ ++ Sbjct: 325 NKIDKLDDETRQAVLTRAARHEHVQALSAVTGEGMSELVGVITSAMTDTTQE 376 >gi|78046337|ref|YP_362512.1| ribosome biogenesis GTP-binding protein YsxC [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78034767|emb|CAJ22412.1| conserved hypothetical protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 221 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 1/55 (1%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKD-VAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 GY++ G SNAGKSS NAL +++ +A V+ PG T+ ++ + E YLV + Sbjct: 38 GGYEVAFAGRSNAGKSSALNALTRQNALARVSKTPGRTQQLVFFQIQPERYLVDL 92 >gi|312897383|ref|ZP_07756807.1| small GTP-binding protein [Megasphaera micronuciformis F0359] gi|310621444|gb|EFQ04980.1| small GTP-binding protein [Megasphaera micronuciformis F0359] Length = 402 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 51/171 (29%), Positives = 87/171 (50%), Gaps = 18/171 (10%) Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVK 270 GE I G+ G+ NAGKSSL NA+ + AIV+D+ GTT D + ++L G +V Sbjct: 9 GERIHIGF----FGNRNAGKSSLVNAVTGQYTAIVSDVKGTTTDPVYKAMELLPLGPVVL 64 Query: 271 ISDTAGIRETDDI----VE--KEGIKRTFLEVENADLILLLKEINSKKEISFPK--NIDF 322 I DT G+ + + +E KE +++T + V D L L + K+ I+ K I + Sbjct: 65 I-DTPGLDDAGKVGLLRIEKTKEVLRKTDIAVIVTDGTLPLTP-SDKELIALVKERKIPY 122 Query: 323 IFIGTKSDLYSTYTEEYDH--LISSFTGEGLEELINKIKSILSNKFKKLPF 371 + K+DL + EE +S+ G+++L ++ S++ + + P Sbjct: 123 CIVRNKADLLNCDKEETGREIFVSTVAKTGIDKLKERLISLVGVRDIETPI 173 >gi|15838031|ref|NP_298719.1| ribosome biogenesis GTP-binding protein YsxC [Xylella fastidiosa 9a5c] gi|9106445|gb|AAF84239.1|AE003973_7 GTP-binding protein [Xylella fastidiosa 9a5c] Length = 229 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 28/105 (26%), Positives = 54/105 (51%), Gaps = 4/105 (3%) Query: 168 IRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGH 227 +R FIE + + Q K++ + + K +S+H + + +G ++ G Sbjct: 3 LRPFIETVVMPPNAQPPQTCDPKQMSSPLECAKYLLSAHTTHQLPAD---DGSEVAFAGR 59 Query: 228 SNAGKSSLFNALAKKD-VAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 SNAGKSS+ N L +++ +A V+ PG T+ ++ + + YLV + Sbjct: 60 SNAGKSSVLNTLTRQNALARVSKTPGRTQQLVYFTVTPQRYLVDL 104 >gi|163782078|ref|ZP_02177077.1| GTP-binding protein Era [Hydrogenivirga sp. 128-5-R1-1] gi|159882610|gb|EDP76115.1| GTP-binding protein Era [Hydrogenivirga sp. 128-5-R1-1] Length = 304 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 33/94 (35%), Positives = 56/94 (59%), Gaps = 6/94 (6%) Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTI-DLDLEGYLVKISD 273 ++ GY + I+G N GKS+L N + + V+IVT PGTTR VL + ++ E ++ + D Sbjct: 1 MKVGY-VTIVGKPNVGKSTLLNNILGRKVSIVTPKPGTTRIRVLGVKNISGEAQIIFL-D 58 Query: 274 TAGIRETD--DIVEKEGIKRTFLEVENADLILLL 305 T GI + D++ K ++ +E+AD+IL + Sbjct: 59 TPGIYQPKGADVLGKSMLQMARQSLEDADVILFM 92 >gi|296269123|ref|YP_003651755.1| GTP-binding proten HflX [Thermobispora bispora DSM 43833] gi|296091910|gb|ADG87862.1| GTP-binding proten HflX [Thermobispora bispora DSM 43833] Length = 501 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 50/194 (25%), Positives = 83/194 (42%), Gaps = 28/194 (14%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKIS 272 R+ + I G++NAGKSSL N L V A+ + T R T D G + ++ Sbjct: 274 RDVPAVAIAGYTNAGKSSLLNRLTGAGVLVEDALFATLDPTVRRARTPD----GRVFTLA 329 Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLL---------KEINSKK----EISFPKN 319 DT G E + T EV +ADLIL + +I + + EI + Sbjct: 330 DTVGFVRHLPHQLVEAFRSTLEEVADADLILHVVDGSHPDPESQIAAVRKVFAEIEGALD 389 Query: 320 IDFIFIGTKSDLYS-------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372 I I + K+D+ + E + ++S+ TGEG++ L+ I L +++ Sbjct: 390 IPEIIVINKADIADPVVLARLSAKERHSVVVSARTGEGIDRLLEAIARELPEPDREVRVL 449 Query: 373 IPSHKRHLYHLSQT 386 +P + L + T Sbjct: 450 VPYERGDLISRAHT 463 >gi|58583504|ref|YP_202520.1| ribosome biogenesis GTP-binding protein YsxC [Xanthomonas oryzae pv. oryzae KACC10331] gi|58428098|gb|AAW77135.1| GTP-binding protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 258 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 1/55 (1%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKD-VAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 GY++ G SNAGKSS NAL +++ +A V+ PG T+ ++ + E YLV + Sbjct: 75 GGYEVAFAGRSNAGKSSALNALTRQNALARVSKTPGRTQQLVFFQIQPERYLVDL 129 >gi|22328152|ref|NP_201448.2| GTP binding / RNA binding [Arabidopsis thaliana] gi|17473914|gb|AAL38371.1| GTP-binding protein-like [Arabidopsis thaliana] gi|20259794|gb|AAM13244.1| GTP-binding protein-like [Arabidopsis thaliana] gi|332010835|gb|AED98218.1| GTP-binding protein Era [Arabidopsis thaliana] Length = 427 Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust. Identities = 81/362 (22%), Positives = 152/362 (41%), Gaps = 67/362 (18%) Query: 113 FSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFI 172 FS EN S + S + + G + ELSS WI + RSF Sbjct: 17 FSTSVVENPNFSPYRIYSRRRVTKSHLQAHNSTTSYGRT-ELSSSKKLWIRQ----RSFS 71 Query: 173 EADLDFSEEEDVQNFSSKEVLNDI----LFLKNDISSHI----SQGKLGEII----RNGY 220 E +++ ++ ED + +++++ L +K D + + +LG R+GY Sbjct: 72 EMEVEQAQLEDDEEQVEIDIVDEASLLSLSMKPDRNMALLDDYEMEELGHTPNTHHRSGY 131 Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 + ++G N GKS+L N + + ++IVTD P TTR + Y + + DT G+ E Sbjct: 132 -VAVVGMPNVGKSTLSNQMIGQKISIVTDKPQTTRHRILGICSSPEYQMILYDTPGVIEK 190 Query: 281 D----DIVEKEGIKRTFLEVENADLILLL----KEINSKKEI------SFPKNIDFIFIG 326 D + + ++ + NAD +++L K + +E+ K + + Sbjct: 191 KMHRLDTMMMKNVRDAAI---NADCVVILVDACKTPTNIEEVLKEGLGDLEKKPPMLLVM 247 Query: 327 TKSDL------------YSTYTEEYDHLI--SSFTGEGLEELINKIKSILSNKFKKLPFS 372 K DL Y +T + D +I S+ G G+E++ I S KLPF Sbjct: 248 NKKDLIKPGEIAKKLEWYEKFT-DVDEVIPVSAKYGHGIEDVKEWILS-------KLPFG 299 Query: 373 IPSHKRHL-------YHLSQTVR---YLEMASLNEKDCGLDIIAENLRLASVSLGKITGC 422 P + + + + +S+ VR +++ + C +++++ R A+ ++ Sbjct: 300 PPYYPKDIVSEHPERFFVSEIVREKIFMQYRNEVPYACQVNVLSYKTRPAAKDFIQVEVV 359 Query: 423 VD 424 VD Sbjct: 360 VD 361 >gi|326202439|ref|ZP_08192308.1| small GTP-binding protein [Clostridium papyrosolvens DSM 2782] gi|325987557|gb|EGD48384.1| small GTP-binding protein [Clostridium papyrosolvens DSM 2782] Length = 396 Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 73/166 (43%), Gaps = 24/166 (14%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276 N I + G N+GKSSL NA+ +D+A+V++I GTT D + ++L V DTAG Sbjct: 10 NRLHIALFGRRNSGKSSLINAITGQDIALVSEIAGTTTDPVYKAMELHPIGPVMFIDTAG 69 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336 + + E I++T +E D+ ++ F GT+ L +T Sbjct: 70 FDDVGTLGELR-IEKTRKAIEKTDVAIVF------------------FSGTELSLEKEWT 110 Query: 337 EEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378 +E +I + E N IK + + +P I + ++ Sbjct: 111 DELKKRKIPVIPVINKADILENTNDIKKQVEDTLGLMPIVISAKEK 156 >gi|150020700|ref|YP_001306054.1| GTP-binding protein Era [Thermosipho melanesiensis BI429] gi|189037682|sp|A6LL68|ERA_THEM4 RecName: Full=GTPase Era gi|149793221|gb|ABR30669.1| GTP-binding protein Era [Thermosipho melanesiensis BI429] Length = 299 Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust. Identities = 32/104 (30%), Positives = 54/104 (51%), Gaps = 2/104 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + + G N GKSSL NA+ + V IV+D P TTR+ + + + V DT GI + Sbjct: 6 VALAGKPNVGKSSLVNAIVGRKVLIVSDKPQTTRNRINVIHTTNDFQVIFVDTPGIHKPL 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFI 325 + + +K ++ DLIL + I++K+ I P+ F ++ Sbjct: 66 YRLGEYMVKAAVSALKGVDLILTV--IDAKEGIGKPEAFVFDYV 107 >gi|307637371|gb|ADN79821.1| Ferrous iron transport protein B [Helicobacter pylori 908] gi|325995964|gb|ADZ51369.1| Ferrous iron transport protein B [Helicobacter pylori 2018] gi|325997559|gb|ADZ49767.1| Ferrous iron transport protein B [Helicobacter pylori 2017] Length = 642 Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust. Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKSSL NAL+ + V + G T D + + L + + + I D G + Sbjct: 6 IALVGQPNVGKSSLINALSNAHLK-VGNFAGVTVDKMEVSLVHKEHQITIIDLPGTYALN 64 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 D +E + + FLE DLIL Sbjct: 65 DFTTEEKVTKDFLEKGQYDLIL 86 >gi|39935664|ref|NP_947940.1| GTP-binding protein HSR1-related [Rhodopseudomonas palustris CGA009] gi|39649517|emb|CAE28039.1| GTP binding protein-like [Rhodopseudomonas palustris CGA009] Length = 424 Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust. Identities = 52/186 (27%), Positives = 79/186 (42%), Gaps = 30/186 (16%) Query: 217 RNGYKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDT 274 R Y++V L G++NAGKS+LFN L + DV D+ T D + L G +SDT Sbjct: 188 RVPYRVVALVGYTNAGKSTLFNRLTRADVQ-AADMLFATLDPTLRAIQLPHGGKAMLSDT 246 Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYST 334 G + T EV ADLIL +++I+ + + ++D + D S Sbjct: 247 VGFISNLPTQLVAAFRATLEEVLEADLILHVRDISHEDAEAQQHDVDNVLRQLGVDAASG 306 Query: 335 YTEEY------------------------DH---LISSFTGEGLEELINKIKSILSNKFK 367 E DH L+S+ +GEG++EL+ I+ L+ Sbjct: 307 RIVEVWNKIDRFEPEQRDELKNIAARRPEDHPCLLVSAVSGEGVDELLLSIEQRLAATRT 366 Query: 368 KLPFSI 373 L SI Sbjct: 367 VLDLSI 372 >gi|295689384|ref|YP_003593077.1| GTP-binding proten HflX [Caulobacter segnis ATCC 21756] gi|295431287|gb|ADG10459.1| GTP-binding proten HflX [Caulobacter segnis ATCC 21756] Length = 446 Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust. Identities = 40/171 (23%), Positives = 83/171 (48%), Gaps = 32/171 (18%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD--VLTIDLDLEGYLVKISDTAGIRE 279 + ++G++NAGKS+LFN L + +V + D+ T D + T+ L +G +SDT G Sbjct: 216 VALVGYTNAGKSTLFNRLTEAEV-LAKDMLFATLDPTLRTVKLP-DGRPAIMSDTVGF-- 271 Query: 280 TDDIVEK--EGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF--IGTKSDLYSTY 335 D+ + E + T EV+ AD++L ++++ + + ++++ + +G D T Sbjct: 272 ISDLPHELVEAFRATLEEVQEADVVLHVRDVANPDSEAQARDVETVLSELGVTLDGGKTV 331 Query: 336 TEEYDHL----------------------ISSFTGEGLEELINKIKSILSN 364 E ++ + +S+ TGEG E L+ ++ ++ + Sbjct: 332 VEVWNKIDLLSEDDREIIEGQARRVGASPVSAVTGEGCEALLRRVGGLIDD 382 >gi|311742267|ref|ZP_07716076.1| GTP-binding protein HflX [Aeromicrobium marinum DSM 15272] gi|311313895|gb|EFQ83803.1| GTP-binding protein HflX [Aeromicrobium marinum DSM 15272] Length = 458 Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 81/177 (45%), Gaps = 29/177 (16%) Query: 222 IVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG- 276 + I G++NAGKSSL N L V A+ + TTR T D G + +SDT G Sbjct: 242 VAIAGYTNAGKSSLLNRLTDAGVLVEDALFATLDPTTRRTQTSD----GRVYTMSDTVGF 297 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL---------KEINSKKEISFPKN---IDFIF 324 +R + E + T EV +DL+L + +I + +E+ + + I Sbjct: 298 VRHLPHQL-VEAFRSTLEEVAESDLVLHVVDGSHPDPAGQIAAVREVFADVDALGVPEII 356 Query: 325 IGTKSDLYSTYT-------EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374 + K+D E + ++S+ TGEG++EL++ I++ L ++ +P Sbjct: 357 VVNKADAADPTVIRQLLAREPHAVVVSARTGEGIDELLDAIEADLPRPASRIEVVLP 413 >gi|85858938|ref|YP_461140.1| GTPase [Syntrophus aciditrophicus SB] gi|85722029|gb|ABC76972.1| GTPase [Syntrophus aciditrophicus SB] Length = 420 Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 54/122 (44%), Gaps = 23/122 (18%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276 N I +LG +N GKSS+ N + +D+AI + + GTT DV+ ++L V DTAG Sbjct: 10 NRLHIALLGRTNVGKSSILNMITGQDIAITSPVAGTTTDVVEKAMELLPLGPVLFLDTAG 69 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336 + DD+ + L + KK D + T+ D + TY Sbjct: 70 L---DDVSK-------------------LSSLRLKKTEKIFDRADVAILVTEPDFWGTYE 107 Query: 337 EE 338 EE Sbjct: 108 EE 109 >gi|27468201|ref|NP_764838.1| GTP-binding protein YqeH [Staphylococcus epidermidis ATCC 12228] gi|57867067|ref|YP_188740.1| GTP-binding protein YqeH [Staphylococcus epidermidis RP62A] gi|251811013|ref|ZP_04825486.1| GTP-binding protein [Staphylococcus epidermidis BCM-HMP0060] gi|282875975|ref|ZP_06284842.1| ribosome biogenesis GTPase YqeH [Staphylococcus epidermidis SK135] gi|293366443|ref|ZP_06613120.1| GTP-binding protein [Staphylococcus epidermidis M23864:W2(grey)] gi|27315747|gb|AAO04882.1|AE016748_116 conserved hypothetical protein [Staphylococcus epidermidis ATCC 12228] gi|57637725|gb|AAW54513.1| GTP-binding protein, putative [Staphylococcus epidermidis RP62A] gi|251805523|gb|EES58180.1| GTP-binding protein [Staphylococcus epidermidis BCM-HMP0060] gi|281295000|gb|EFA87527.1| ribosome biogenesis GTPase YqeH [Staphylococcus epidermidis SK135] gi|291319212|gb|EFE59581.1| GTP-binding protein [Staphylococcus epidermidis M23864:W2(grey)] gi|319400931|gb|EFV89150.1| putative GTPase [Staphylococcus epidermidis FRI909] gi|329735274|gb|EGG71566.1| ribosome biogenesis GTPase YqeH [Staphylococcus epidermidis VCU045] gi|329737334|gb|EGG73588.1| ribosome biogenesis GTPase YqeH [Staphylococcus epidermidis VCU028] Length = 366 Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust. Identities = 38/149 (25%), Positives = 69/149 (46%), Gaps = 19/149 (12%) Query: 216 IRNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270 +RN + I+G +N GKS+L N L +KDV + PGTT D++ I LD + ++ Sbjct: 157 VRNKDDVYIVGTTNVGKSTLINKLIEQSVGEKDVVTTSRFPGTTLDMIDIPLDEKSFMF- 215 Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP--KNIDFI----- 323 DT GI ++ + + + ++ + ++N K+ + F ID++ Sbjct: 216 --DTPGIIQSHQMTNYVSENELKIIIPKNEIKQRVYQLNEKQTLFFGGLARIDYVSGGKR 273 Query: 324 ----FIGTKSDLYSTYTEEYDHLISSFTG 348 F +++ T TE+ + L S G Sbjct: 274 PLVCFFSNDLNIHRTKTEKANDLWKSQLG 302 >gi|220932088|ref|YP_002508996.1| GTP-binding protein Era [Halothermothrix orenii H 168] gi|259645948|sp|B8CXI2|ERA_HALOH RecName: Full=GTPase Era gi|219993398|gb|ACL70001.1| GTP-binding protein Era [Halothermothrix orenii H 168] Length = 294 Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust. Identities = 32/104 (30%), Positives = 57/104 (54%), Gaps = 6/104 (5%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRET 280 + ++G N GKS+L N L + V I + P TTR+ V I EG +V + DT GI + Sbjct: 8 VSVIGRPNVGKSTLINNLIGQKVVITSPRPQTTRNSVRGIYTRPEGQIVFV-DTPGIHKA 66 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF 324 + ++ +++ + +E+ D+I+ + + N SF K +FI+ Sbjct: 67 RNKLDNYMLEKAYESLEDIDVIIFMVDGNY----SFGKGDEFIY 106 >gi|323342097|ref|ZP_08082330.1| GTP-binding protein Era [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464522|gb|EFY09715.1| GTP-binding protein Era [Erysipelothrix rhusiopathiae ATCC 19414] Length = 298 Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 33/56 (58%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 I I+G NAGKS+L N + K+ +AIVT+ TTRD + E Y + DT GI Sbjct: 8 ISIVGRPNAGKSTLINQIVKQKIAIVTEKAQTTRDAIIGVKTEEDYQLIFIDTPGI 63 >gi|329725392|gb|EGG61875.1| ribosome biogenesis GTPase YqeH [Staphylococcus epidermidis VCU144] Length = 366 Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust. Identities = 38/149 (25%), Positives = 69/149 (46%), Gaps = 19/149 (12%) Query: 216 IRNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270 +RN + I+G +N GKS+L N L +KDV + PGTT D++ I LD + ++ Sbjct: 157 VRNKDDVYIVGTTNVGKSTLINKLIEQSVGEKDVVTTSRFPGTTLDMIDIPLDEKSFMF- 215 Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP--KNIDFI----- 323 DT GI ++ + + + ++ + ++N K+ + F ID++ Sbjct: 216 --DTPGIIQSHQMTNYVSENELKIIIPKNEIKQRVYQLNEKQTLFFGGLARIDYVSGGNR 273 Query: 324 ----FIGTKSDLYSTYTEEYDHLISSFTG 348 F +++ T TE+ + L S G Sbjct: 274 PLVCFFSNDLNIHRTKTEKANDLWKSQLG 302 >gi|311063949|ref|YP_003970674.1| GTP-binding protein HflX [Bifidobacterium bifidum PRL2010] gi|313139783|ref|ZP_07801976.1| GTPase [Bifidobacterium bifidum NCIMB 41171] gi|310866268|gb|ADP35637.1| HflX GTP-binding protein [Bifidobacterium bifidum PRL2010] gi|313132293|gb|EFR49910.1| GTPase [Bifidobacterium bifidum NCIMB 41171] Length = 500 Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust. Identities = 60/217 (27%), Positives = 93/217 (42%), Gaps = 31/217 (14%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G++NAGKSSL N L + + T + +G L DT G Sbjct: 265 IAVVGYTNAGKSSLTNRLTGSAELVENALFATLDTAVRRARAKDGRLYAYVDTVGFVRNL 324 Query: 282 DIVEKEGIKRTFLEVENADLIL-------------------LLKEINSKKEISFPK---- 318 E K T EV AD+IL +L +I +EI P+ Sbjct: 325 PTQLIEAFKSTLEEVAEADIILHVVDGSHPDPFSQIDAVNDVLADIEGAEEI--PRVVVF 382 Query: 319 -NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377 ID I T+ L + E L+S+ TGEGL++L+ +I+S+L + +P Sbjct: 383 NKIDRIDAATRERLAALEPEA--SLVSAATGEGLDDLLRRIESMLPVPGVHVSALLPYDA 440 Query: 378 RHLYHLSQTVRYLEMASLNEKDCGLDIIAE-NLRLAS 413 L LS Y + S++ + G+ I A+ + RLA+ Sbjct: 441 GSL--LSHVREYGNVDSVDYRADGIWIEADVDRRLAA 475 >gi|224282624|ref|ZP_03645946.1| GTP-binding protein [Bifidobacterium bifidum NCIMB 41171] gi|310287084|ref|YP_003938342.1| GTP-binding protein [Bifidobacterium bifidum S17] gi|309251020|gb|ADO52768.1| GTP-binding protein [Bifidobacterium bifidum S17] Length = 521 Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust. Identities = 60/217 (27%), Positives = 93/217 (42%), Gaps = 31/217 (14%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G++NAGKSSL N L + + T + +G L DT G Sbjct: 286 IAVVGYTNAGKSSLTNRLTGSAELVENALFATLDTAVRRARAKDGRLYAYVDTVGFVRNL 345 Query: 282 DIVEKEGIKRTFLEVENADLIL-------------------LLKEINSKKEISFPK---- 318 E K T EV AD+IL +L +I +EI P+ Sbjct: 346 PTQLIEAFKSTLEEVAEADIILHVVDGSHPDPFSQIDAVNDVLADIEGAEEI--PRVVVF 403 Query: 319 -NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377 ID I T+ L + E L+S+ TGEGL++L+ +I+S+L + +P Sbjct: 404 NKIDRIDAATRERLAALEPEA--SLVSAATGEGLDDLLRRIESMLPVPGVHVSALLPYDA 461 Query: 378 RHLYHLSQTVRYLEMASLNEKDCGLDIIAE-NLRLAS 413 L LS Y + S++ + G+ I A+ + RLA+ Sbjct: 462 GSL--LSHVREYGNVDSVDYRADGIWIEADVDRRLAA 496 >gi|314981203|gb|EFT25297.1| GTP-binding protein Era [Propionibacterium acnes HL110PA3] gi|315091774|gb|EFT63750.1| GTP-binding protein Era [Propionibacterium acnes HL110PA4] gi|315103278|gb|EFT75254.1| GTP-binding protein Era [Propionibacterium acnes HL050PA2] gi|315105483|gb|EFT77459.1| GTP-binding protein Era [Propionibacterium acnes HL030PA1] Length = 342 Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust. Identities = 45/192 (23%), Positives = 82/192 (42%), Gaps = 27/192 (14%) Query: 210 GKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266 ++ E R G+ + +G NAGKS+L NAL +AI + P TTR V+ + E Sbjct: 30 ARVAESTRAGFHSGFVCFVGRPNAGKSTLTNALVGSKIAIASSKPQTTRHVIRGVVTDEK 89 Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEIS-F 316 + + DT G+ + ++ + F D+I + N + +I+ Sbjct: 90 SQIVVIDTPGLHKPRTLLGQRLNDLVFDTWTQVDVIGVCLPSNQRIGPGDTYLVSQIAEL 149 Query: 317 PKNIDFIFIGTKSDLYS-TYTEEYDHLISSFTGE-GLE------------ELINKIKSIL 362 P+ + + TKSDL S E+ I GE G+E E +++++ ++ Sbjct: 150 PRRPTLVALATKSDLVSKARMAEHLATIDKLQGEVGIEFVEIVPCSAVSGEQVDEVRDVI 209 Query: 363 SNKFKKLPFSIP 374 ++ + P P Sbjct: 210 ASLLPEGPAYYP 221 >gi|314923092|gb|EFS86923.1| GTP-binding protein Era [Propionibacterium acnes HL001PA1] Length = 342 Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust. Identities = 45/192 (23%), Positives = 82/192 (42%), Gaps = 27/192 (14%) Query: 210 GKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266 ++ E R G+ + +G NAGKS+L NAL +AI + P TTR V+ + E Sbjct: 30 ARVAESTRAGFHSGFVCFVGRPNAGKSTLTNALVGSKIAIASSKPQTTRHVIRGVVTDEK 89 Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEIS-F 316 + + DT G+ + ++ + F D+I + N + +I+ Sbjct: 90 SQIVVIDTPGLHKPRTLLGQRLNDLVFDTWTQVDVIGVCLPSNQRIGPGDTYLVSQIAEL 149 Query: 317 PKNIDFIFIGTKSDLYS-TYTEEYDHLISSFTGE-GLE------------ELINKIKSIL 362 P+ + + TKSDL S E+ I GE G+E E +++++ ++ Sbjct: 150 PRRPTLVALATKSDLVSKARMAEHLATIDKLQGEVGIEFVEIVPCSAVSGEQVDEVRDVI 209 Query: 363 SNKFKKLPFSIP 374 ++ + P P Sbjct: 210 ASLLPEGPAYYP 221 >gi|302871791|ref|YP_003840427.1| GTP-binding protein Era [Caldicellulosiruptor obsidiansis OB47] gi|302574650|gb|ADL42441.1| GTP-binding protein Era [Caldicellulosiruptor obsidiansis OB47] Length = 300 Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust. Identities = 41/144 (28%), Positives = 69/144 (47%), Gaps = 20/144 (13%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 ++G+ + ++G N GKS+L N L K ++I++ P TTR+ + L LE + DT G Sbjct: 4 KSGF-VALIGRPNVGKSTLLNYLVGKKISIISPKPQTTRNSIKGILTLEDAQIIFIDTPG 62 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKE-------------INSKKEISFPKNIDFI 323 + + + + +K + ++ DLIL + E I K++ PK I Sbjct: 63 VHPPKNKLGEYMVKVSEKTLKEVDLILYIVEAIDNGIGPWDEAIIEKLKDVETPK----I 118 Query: 324 FIGTKSDLYSTYTEEYDHLISSFT 347 + KSDL S E + L S F+ Sbjct: 119 LVLNKSDLAS--KENVEMLKSIFS 140 >gi|42522382|ref|NP_967762.1| GTP-binding protein [Bdellovibrio bacteriovorus HD100] gi|81829281|sp|Q6MPP2|ENGB_BDEBA RecName: Full=Probable GTP-binding protein EngB gi|39574914|emb|CAE78755.1| GTP-binding protein [Bdellovibrio bacteriovorus HD100] Length = 200 Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 7/71 (9%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-------DVLTIDLDLEGYLVKISDT 274 + I G SNAGKSS NAL K +A V+ PG TR D + +D+ GY Sbjct: 34 VAIAGRSNAGKSSFINALTKNKIAKVSSTPGKTRLLNFFELDQSYVMVDMPGYGFAARSG 93 Query: 275 AGIRETDDIVE 285 +RE ++E Sbjct: 94 DEMREWHRMIE 104 >gi|13357826|ref|NP_078100.1| GTPase EngB [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|167971952|ref|ZP_02554229.1| ATP/GTP-binding protein [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|168282428|ref|ZP_02690095.1| ATP/GTP-binding protein [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|170762083|ref|YP_001752349.1| ribosome biogenesis GTP-binding protein YsxC [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|13124226|sp|Q9PQM5|ENGB_UREPA RecName: Full=Probable GTP-binding protein EngB gi|189037196|sp|B1AIQ5|ENGB_UREP2 RecName: Full=Probable GTP-binding protein EngB gi|11356756|pir||D82913 conserved hypothetical ATP/GTP-binding protein UU266 [imported] - Ureaplasma urealyticum gi|6899237|gb|AAF30675.1|AE002123_8 conserved hypothetical ATP/GTP-binding protein [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827660|gb|ACA32922.1| ATP/GTP-binding protein [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|182675765|gb|EDT87670.1| ATP/GTP-binding protein [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186700634|gb|EDU18916.1| ATP/GTP-binding protein [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 208 Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 6/54 (11%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID------LDLEGY 267 ++I ++G SN GKSSL NALA K +A ++ PG T+ V D +DL GY Sbjct: 20 FEICVIGRSNVGKSSLINALANKKIARTSNTPGRTQLVNFFDFNNFRLVDLPGY 73 >gi|50842423|ref|YP_055650.1| GTP-binding protein Era [Propionibacterium acnes KPA171202] gi|282854117|ref|ZP_06263454.1| GTP-binding protein Era [Propionibacterium acnes J139] gi|50840025|gb|AAT82692.1| GTP-binding protein Era homolog [Propionibacterium acnes KPA171202] gi|282583570|gb|EFB88950.1| GTP-binding protein Era [Propionibacterium acnes J139] Length = 340 Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust. Identities = 45/192 (23%), Positives = 82/192 (42%), Gaps = 27/192 (14%) Query: 210 GKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266 ++ E R G+ + +G NAGKS+L NAL +AI + P TTR V+ + E Sbjct: 28 ARVAESTRAGFHSGFVCFVGRPNAGKSTLTNALVGSKIAIASSKPQTTRHVIRGVVTDEK 87 Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---------KEIS-F 316 + + DT G+ + ++ + F D+I + N + +I+ Sbjct: 88 SQIVVIDTPGLHKPRTLLGQRLNDLVFDTWTQVDVIGVCLPSNQRIGPGDTYLVSQIAEL 147 Query: 317 PKNIDFIFIGTKSDLYS-TYTEEYDHLISSFTGE-GLE------------ELINKIKSIL 362 P+ + + TKSDL S E+ I GE G+E E +++++ ++ Sbjct: 148 PRRPTLVALATKSDLVSKARMAEHLATIDKLQGEVGIEFVEIVPCSAVSGEQVDEVRDVI 207 Query: 363 SNKFKKLPFSIP 374 ++ + P P Sbjct: 208 ASLLPEGPAYYP 219 >gi|86158078|ref|YP_464863.1| small GTP-binding protein Era [Anaeromyxobacter dehalogenans 2CP-C] gi|85774589|gb|ABC81426.1| small GTP-binding protein Era [Anaeromyxobacter dehalogenans 2CP-C] Length = 310 Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust. Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 1/97 (1%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R G+ + I+G N GKS+L N + + VAIV+ P TTR + ++ G V DT G Sbjct: 10 RAGF-VAIVGRPNVGKSTLLNRVLGEHVAIVSPRPQTTRTRILGVHNVPGAQVAFFDTPG 68 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313 + + + + ++ + D +L+L E + E Sbjct: 69 LHKAKGALNRRMVETALSTLSEVDAVLMLIEAGTGPE 105 >gi|311030172|ref|ZP_07708262.1| GTP-binding proten HflX [Bacillus sp. m3-13] Length = 422 Score = 45.1 bits (105), Expect = 0.020, Method: Compositional matrix adjust. Identities = 47/194 (24%), Positives = 85/194 (43%), Gaps = 26/194 (13%) Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK----KDVAIVTDIPGTTRDVL 258 I SH + + +++ ++G++NAGKS++FN L + ++ + + TTR V+ Sbjct: 185 IVSHRERYRERRKRNQAFQLSLVGYTNAGKSTIFNRLTEAGTFEENLLFATLDPTTRKVM 244 Query: 259 TIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK 318 G+ ++DT G + + T EV ADLIL + + +S ++ K Sbjct: 245 MPS----GFNALLTDTVGFIQDLPTSLVAAFRSTLEEVTEADLILHVVDSSSPDHVNHEK 300 Query: 319 NID------------FIFIGTKSD-----LYSTYTEEYDHLISSFTGEGLEELINKIKSI 361 +D + I K D Y +E H IS+ + LINKI+S+ Sbjct: 301 TVDKLLKELGVEGVPVLTIYNKKDQTAEGFTPAYNQEILH-ISALDPMDITLLINKIESL 359 Query: 362 LSNKFKKLPFSIPS 375 + + + +PS Sbjct: 360 IKVQMEPYHIVVPS 373 >gi|255325164|ref|ZP_05366270.1| GTP-binding protein HflX [Corynebacterium tuberculostearicum SK141] gi|255297729|gb|EET77040.1| GTP-binding protein HflX [Corynebacterium tuberculostearicum SK141] Length = 497 Score = 45.1 bits (105), Expect = 0.020, Method: Compositional matrix adjust. Identities = 54/206 (26%), Positives = 88/206 (42%), Gaps = 36/206 (17%) Query: 221 KIVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 +I I G++NAGKSSL NA+ V A+ + TTR D G V +DT G Sbjct: 270 QIAIAGYTNAGKSSLINAMTGAGVLVEDALFATLDPTTRRATLAD----GRQVVFTDTVG 325 Query: 277 IRETDDIVEKEGIKRTFLEVENADLIL---------LLKEINSKKEISF----------P 317 E K T EV AD++L LK+I + ++ + P Sbjct: 326 FVRHLPTQLVEAFKSTLEEVLAADIMLHVVDGSDPFPLKQIEAVNQVIYDIVSETGEQAP 385 Query: 318 KNIDFIFIGTKSD--LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPF 371 I I ++D + + DH +S+ TGEG++EL +++ L+++ + Sbjct: 386 PEIIVINKIDQADPLVLAELRHVLDHEDVVYVSARTGEGIDELTARVELFLNSRDSHVKL 445 Query: 372 SIPSHKRHL---YHLSQTVRYLEMAS 394 +P + + H TVR+ E + Sbjct: 446 QVPFTRGDVVARVHAEGTVRHEEYTA 471 >gi|298530546|ref|ZP_07017948.1| GTP-binding protein Era [Desulfonatronospira thiodismutans ASO3-1] gi|298509920|gb|EFI33824.1| GTP-binding protein Era [Desulfonatronospira thiodismutans ASO3-1] Length = 303 Score = 45.1 bits (105), Expect = 0.020, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 49/83 (59%), Gaps = 2/83 (2%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 ++G NAGKS+L N L + VAIVT TTR+ ++ L + Y V DT G+ + Sbjct: 15 LVGPPNAGKSTLMNTLVGEKVAIVTPKAQTTRNRISGILSTDRYQVVFMDTPGVNKARGK 74 Query: 284 VEKEGIKRTFLE-VENADLILLL 305 + E + R+ +E + +AD++LL+ Sbjct: 75 L-GELLNRSAMEGLNSADVVLLV 96 >gi|188990195|ref|YP_001902205.1| ribosome biogenesis GTP-binding protein YsxC [Xanthomonas campestris pv. campestris str. B100] gi|167731955|emb|CAP50141.1| GTP-binding protein [Xanthomonas campestris pv. campestris] Length = 222 Score = 45.1 bits (105), Expect = 0.020, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 1/55 (1%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKD-VAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 GY++ G SNAGKSS NAL +++ +A V+ PG T+ ++ + E YLV + Sbjct: 39 GGYEVAFAGRSNAGKSSALNALTRQNSLARVSKTPGRTQQLVFFQIQPERYLVDL 93 >gi|87301104|ref|ZP_01083945.1| GTP-binding protein Era [Synechococcus sp. WH 5701] gi|87284072|gb|EAQ76025.1| GTP-binding protein Era [Synechococcus sp. WH 5701] Length = 343 Score = 45.1 bits (105), Expect = 0.020, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 1/92 (1%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273 E R+G+ + ++G N GKS+L N L + VAI + + TTR+ L L + + D Sbjct: 33 EGFRSGF-VALIGRPNVGKSTLLNHLVGEKVAITSPVAQTTRNRLRAILTTPSAQLVLLD 91 Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 T GI + ++ + +K + D++LLL Sbjct: 92 TPGIHKPHHLLGERLVKSARSAIGEVDVVLLL 123 >gi|294139257|ref|YP_003555235.1| GTP-binding protein HflX [Shewanella violacea DSS12] gi|293325726|dbj|BAJ00457.1| GTP-binding protein HflX [Shewanella violacea DSS12] Length = 432 Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust. Identities = 61/231 (26%), Positives = 99/231 (42%), Gaps = 42/231 (18%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRE- 279 + ++G++NAGKS+LFN+L DV + T L LDL + ++DT G IR Sbjct: 200 VSLVGYTNAGKSTLFNSLTVSDVYAADQLFATLDPTLR-KLDLPDGAIILADTVGFIRHL 258 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSK-------------KEISFPKNIDFIFIG 326 D+V K T E ADL+L + + + KEI I + + Sbjct: 259 PHDLV--AAFKSTLQETREADLLLHIVDCHDDNMEDNFEQVQLVLKEIG-ADEIPQLVVC 315 Query: 327 TKSDLYSTYTEEYDH---------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377 K DL + D+ +S+ +GL++L I I+ +L IP+ Sbjct: 316 NKIDLLEDVSPRIDYNDEGVPTRVWVSAQQQKGLDQLKEAINQIVGRATLELTLRIPATA 375 Query: 378 RHLYHLSQTVRYLEMASLNEK------DCGLDII---AENLRLASVSLGKI 419 H +L Q + + ++ +K DC L + A+ LRL S G++ Sbjct: 376 GH--YLGQ---FYRLDAIQQKEFDDLGDCILSVRLLEADWLRLVKQSQGEL 421 >gi|269798900|ref|YP_003312800.1| small GTP-binding protein [Veillonella parvula DSM 2008] gi|269095529|gb|ACZ25520.1| small GTP-binding protein [Veillonella parvula DSM 2008] Length = 456 Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 1/67 (1%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAG 276 N I G NAGKS+L N L + V++V+D+ GTT D ++ ++ L V I+DTAG Sbjct: 8 NRIHIGFFGRCNAGKSTLINMLTDQPVSLVSDVAGTTTDPVSKAMEILPLGPVVITDTAG 67 Query: 277 IRETDDI 283 I +T ++ Sbjct: 68 IDDTTEL 74 >gi|197294660|ref|YP_001799201.1| GTP-binding protein Era [Candidatus Phytoplasma australiense] gi|171853987|emb|CAM11950.1| Glycyl-tRNA synthetase [Candidatus Phytoplasma australiense] Length = 292 Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust. Identities = 26/87 (29%), Positives = 49/87 (56%), Gaps = 2/87 (2%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTIDLDLEGYLVKISDTAGIRET 280 I I+G N GKS+L N L + +AI +D P TTR ++ I + + + + DT GI + Sbjct: 8 IAIVGRPNVGKSTLLNVLTNQKIAITSDKPQTTRHKIVGICHESDAQYIFV-DTPGINQY 66 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE 307 ++ ++ + +F + + D+IL + + Sbjct: 67 KYLLNQKMNQISFRSISDVDVILFVTD 93 >gi|168308581|ref|ZP_02691256.1| ATP/GTP-binding protein [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|171902437|gb|EDT48726.1| ATP/GTP-binding protein [Ureaplasma parvum serovar 1 str. ATCC 27813] Length = 208 Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 6/54 (11%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID------LDLEGY 267 ++I ++G SN GKSSL NALA K +A ++ PG T+ V D +DL GY Sbjct: 20 FEICVIGRSNVGKSSLINALANKKIARTSNTPGRTQLVNFFDFNNFRLVDLPGY 73 >gi|197122610|ref|YP_002134561.1| GTP-binding protein Era [Anaeromyxobacter sp. K] gi|196172459|gb|ACG73432.1| GTP-binding protein Era [Anaeromyxobacter sp. K] Length = 310 Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust. Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 1/97 (1%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R G+ + I+G N GKS+L N + + VAIV+ P TTR + ++ G V DT G Sbjct: 10 RAGF-VAIVGRPNVGKSTLLNRVLGEHVAIVSPRPQTTRTRILGVHNVPGAQVAFFDTPG 68 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313 + + + + ++ + D +L+L E + E Sbjct: 69 LHKAKGALNRRMVETALSTLSEVDAVLMLIEAGTGPE 105 >gi|7449539|pir||B65042 yfjP protein - Escherichia coli (strain K-12) Length = 289 Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 1/84 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G + AGKSSL NAL +V+ V+D+ TRD L L + + + I D G+ E+ Sbjct: 41 IGIMGKTGAGKSSLCNALFAGEVSPVSDVAACTRDPLRFRLQIGEHFMTIVDLPGVGES- 99 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + E ++ DLIL L Sbjct: 100 GVRDTEYAALYREQLPRLDLILWL 123 >gi|304373109|ref|YP_003856318.1| GTP-binding protein era-like protein [Mycoplasma hyorhinis HUB-1] gi|304309300|gb|ADM21780.1| GTP-binding protein era-like protein [Mycoplasma hyorhinis HUB-1] gi|330723266|gb|AEC45636.1| GTPase Era [Mycoplasma hyorhinis MCLD] Length = 292 Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 46/90 (51%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N+GKS++ N + D++IV+ P TTRD + + + + DT G + + Sbjct: 6 VSIIGLPNSGKSTMLNTILDYDLSIVSYKPQTTRDQINGIYSEDDFQIVFVDTPGFQSEN 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK 311 + K K +E+ DL L L +N K Sbjct: 66 SLFSKVLNKNAISSLEDIDLALFLHPVNRK 95 >gi|255292518|dbj|BAH89633.1| GTP-binding protein EngA [uncultured bacterium] Length = 192 Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 30/56 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 I +LG N GKS+LFN L + A+V D PG TRD L L + DT G+ Sbjct: 5 IALLGRPNVGKSTLFNRLTRTRDALVADFPGVTRDRLVGSGQLGDRPFWVVDTGGL 60 >gi|192291246|ref|YP_001991851.1| GTP-binding proten HflX [Rhodopseudomonas palustris TIE-1] gi|192284995|gb|ACF01376.1| GTP-binding proten HflX [Rhodopseudomonas palustris TIE-1] Length = 455 Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust. Identities = 50/185 (27%), Positives = 76/185 (41%), Gaps = 28/185 (15%) Query: 217 RNGYKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 R Y++V L G++NAGKS+LFN L + DV + T L G +SDT Sbjct: 219 RVPYRVVALVGYTNAGKSTLFNRLTRADVQAADMLFATLDPTLRAIQLPHGGKAMLSDTV 278 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTY 335 G + T EV ADLIL +++I+ + + ++D + D S Sbjct: 279 GFISNLPTQLVAAFRATLEEVLEADLILHVRDISHEDAEAQQHDVDNVLRQLGVDAASGR 338 Query: 336 TEEY------------------------DH---LISSFTGEGLEELINKIKSILSNKFKK 368 E DH L+S+ +GEG++EL+ I+ L+ Sbjct: 339 IVEVWNKIDRFEPEQRDELKNIAARRPEDHPCLLVSAVSGEGVDELLLSIEQRLAATRTV 398 Query: 369 LPFSI 373 L SI Sbjct: 399 LDLSI 403 >gi|146296963|ref|YP_001180734.1| GTP-binding protein Era [Caldicellulosiruptor saccharolyticus DSM 8903] gi|189037251|sp|A4XKV8|ERA_CALS8 RecName: Full=GTPase Era gi|145410539|gb|ABP67543.1| GTP-binding protein Era [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 300 Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust. Identities = 53/192 (27%), Positives = 88/192 (45%), Gaps = 29/192 (15%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 ++G+ + ++G N GKS+L N K ++I++ P TTR+ + L L+ + DT G Sbjct: 4 KSGF-VALIGRPNVGKSTLMNYFVGKKISIISPKPQTTRNSIKGILTLDDAQIIFIDTPG 62 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKE-------------INSKKEISFPKNIDFI 323 + + + + +K + ++ DLIL + E + KE+ PK I Sbjct: 63 VHPPKNKLGEYMVKVSEKTLKEVDLILYIVEAIDSGIGPWDEAILEKLKEVQTPK----I 118 Query: 324 FIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSI-------LSNKFKKLPFSIPSH 376 + K+DL S E + L S F+G E I +I +I L K KKL P Sbjct: 119 LVLNKADLAS--KENIEILKSLFSGRLSFEFIIEIAAINGYNCDVLLEKIKKLLPEGP-- 174 Query: 377 KRHLYHLSQTVR 388 K +L ++ VR Sbjct: 175 KYYLDDMTTDVR 186 >gi|123484501|ref|XP_001324283.1| small GTP-binding protein [Trichomonas vaginalis G3] gi|121907163|gb|EAY12060.1| small GTP-binding protein, putative [Trichomonas vaginalis G3] Length = 193 Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust. Identities = 48/173 (27%), Positives = 76/173 (43%), Gaps = 24/173 (13%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIP---GTTRDVLTIDLDLEGYLVKISDTAG 276 YKI++LG+S GK+S+ + K+ D+ G + I+L + +K+ DTAG Sbjct: 9 YKIILLGNSGTGKTSIID--RKRLGTTAPDLHPTIGCNSTDMVINLKDKSVKLKVWDTAG 66 Query: 277 IRETDDIVE--KEGIKRTFLEVENADL--ILLLKEINSKKEISFPKNIDFIFIGTKSDLY 332 E IV G L + D+ I L S S P + F +G K D+ Sbjct: 67 QEEYKSIVPIYTRGAHAALLVFDVTDMSSIQSLDGWRSMLLESEPTEVPFFVVGNKIDMK 126 Query: 333 S----------TYTEEYD---HLISSFTGEGLEELINKIKSILSNK--FKKLP 370 S TY Y + +S+ +G+G+ EL K+ +S + F+K P Sbjct: 127 SENTISREIAQTYATRYSADLYFVSALSGQGINELFEKVAEKVSERKSFEKDP 179 >gi|95930679|ref|ZP_01313413.1| Small GTP-binding protein domain [Desulfuromonas acetoxidans DSM 684] gi|95133331|gb|EAT14996.1| Small GTP-binding protein domain [Desulfuromonas acetoxidans DSM 684] Length = 436 Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 5/87 (5%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG---IR 278 + I+G N GKS+LFN + + AIV D PG TRD D+ + DT G + Sbjct: 4 VAIVGRPNVGKSTLFNRILGERKAIVEDYPGVTRDRNYADVTRYDKPFTLIDTGGFEPVS 63 Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL 305 E +V+ +++ L +E AD+IL + Sbjct: 64 EVRMLVQMR--EQSQLAIEEADVILFV 88 Score = 40.4 bits (93), Expect = 0.57, Method: Compositional matrix adjust. Identities = 21/66 (31%), Positives = 31/66 (46%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ ++G N GKSSL N L + + GTTRD + + DTAGIR Sbjct: 176 RLAVIGRPNVGKSSLVNKLLGYERVVANPTAGTTRDSVDTPFTYNNQRYVLIDTAGIRRK 235 Query: 281 DDIVEK 286 + +K Sbjct: 236 GKVSQK 241 >gi|302670578|ref|YP_003830538.1| GTP-binding protein Era [Butyrivibrio proteoclasticus B316] gi|302395051|gb|ADL33956.1| GTP-binding protein Era [Butyrivibrio proteoclasticus B316] Length = 364 Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust. Identities = 43/175 (24%), Positives = 80/175 (45%), Gaps = 30/175 (17%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRET 280 I ++G N GKS+L N + + +AI ++ P TTR+ ++T+ D + ++ + DT GI ++ Sbjct: 10 ITLIGRPNVGKSTLMNHMIGQKIAITSNKPQTTRNKIMTVYTDDDCQMIFL-DTPGIHDS 68 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE------------INSKKEISFP-----KNIDFI 323 + + + K +E D++L L E I K+ P ID + Sbjct: 69 KNKLGEYMTKVAKSTLEEVDVVLWLVEPSTFIGAGEKSIIEELKKCRKPVILVINKIDTV 128 Query: 324 FIGTKSDLYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374 + Y +E D +++ G+ ++EL++ IK + LPF P Sbjct: 129 SKDNLDKFENAYRQEMDFDRVVKVAALKGQNIDELMDAIKKL-------LPFGPP 176 >gi|218887297|ref|YP_002436618.1| GTP-binding protein Era [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|226741205|sp|B8DQN1|ERA_DESVM RecName: Full=GTPase Era gi|218758251|gb|ACL09150.1| GTP-binding protein Era [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 307 Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 73/157 (46%), Gaps = 17/157 (10%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R G+ + +LG NAGKS+L N+ VAIVT TTR+ + L V DT G Sbjct: 7 RCGW-VALLGPPNAGKSTLLNSALGHKVAIVTPRAQTTRNQIVGILSEPDAQVIFMDTPG 65 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYT 336 I + + K ++ + + +AD+IL++ + + + K DF+ K + + Sbjct: 66 IHQQRGRMNKILLQTAWQSMHSADVILVMLDAD-----LYIKKPDFLENDVKPLMDAVAA 120 Query: 337 EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373 EE +++ +NK+ + +K K LP I Sbjct: 121 EERPVIVA----------VNKV-DLFRDKSKMLPLFI 146 >gi|49176249|ref|YP_026173.1| CP4-57 prophage; predicted GTP-binding protein [Escherichia coli str. K-12 substr. MG1655] gi|89109431|ref|AP_003211.1| predicted GTP-binding protein [Escherichia coli str. K-12 substr. W3110] gi|170082232|ref|YP_001731552.1| CP4-57 prophage; GTP-binding protein [Escherichia coli str. K-12 substr. DH10B] gi|238901790|ref|YP_002927586.1| CP4-57 prophage; putative GTP-binding protein [Escherichia coli BW2952] gi|54042338|sp|P52131|YFJP_ECOLI RecName: Full=Uncharacterized protein yfjP gi|48994902|gb|AAT48146.1| CP4-57 prophage; predicted GTP-binding protein [Escherichia coli str. K-12 substr. MG1655] gi|85675495|dbj|BAE76767.1| predicted GTP-binding protein [Escherichia coli str. K12 substr. W3110] gi|169890067|gb|ACB03774.1| CP4-57 prophage; predicted GTP-binding protein [Escherichia coli str. K-12 substr. DH10B] gi|238860627|gb|ACR62625.1| CP4-57 prophage; predicted GTP-binding protein [Escherichia coli BW2952] gi|260448297|gb|ACX38719.1| GTP-binding protein HSR1-related protein [Escherichia coli DH1] gi|315137248|dbj|BAJ44407.1| CP4-57 prophage; putative GTP-binding protein [Escherichia coli DH1] Length = 287 Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 1/84 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G + AGKSSL NAL +V+ V+D+ TRD L L + + + I D G+ E+ Sbjct: 39 IGIMGKTGAGKSSLCNALFAGEVSPVSDVAACTRDPLRFRLQIGEHFMTIVDLPGVGES- 97 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + E ++ DLIL L Sbjct: 98 GVRDTEYAALYREQLPRLDLILWL 121 >gi|28493018|ref|NP_787179.1| bifunctional cytidylate kinase/GTP-binding protein [Tropheryma whipplei str. Twist] gi|28572231|ref|NP_789011.1| bifunctional cytidylate kinase/GTP-binding protein [Tropheryma whipplei TW08/27] gi|28410362|emb|CAD66748.1| putative GTP-binding protein [Tropheryma whipplei TW08/27] gi|28476058|gb|AAO44148.1| cytidylate kinase/GTP-binding protein fusion [Tropheryma whipplei str. Twist] Length = 686 Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 12/86 (13%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ ++G N GKSSL N L AIV D+ GTTRD L L I D + + Sbjct: 427 RVALIGRPNVGKSSLINQLTNSRRAIVDDLAGTTRDPLDA-------LAVIGDKSWL--- 476 Query: 281 DDIVEKEGIKRTFLEVENADLILLLK 306 V+ G++R F + AD L+ Sbjct: 477 --FVDTAGLRRKFKSQKGADFYAYLR 500 Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust. Identities = 25/91 (27%), Positives = 46/91 (50%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 G +VI+G N GKS+L N + + A+V + PG TRD + G + DT G Sbjct: 254 GATVVIVGRPNVGKSALVNCILGRREAVVENRPGVTRDRVVYPAFWAGRPFTLVDTGGWE 313 Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEIN 309 + ++ E + + + + AD+I+ + ++ Sbjct: 314 CDAEGLDAEVVAQAEIGMSIADIIIFVVDVQ 344 >gi|301167245|emb|CBW26827.1| GTP-binding protein [Bacteriovorax marinus SJ] Length = 335 Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + +LG N GKSSL N L D+++VT+ TTR+ + ++ + + DT G+ +T+ Sbjct: 24 VAVLGAPNVGKSSLVNYLLGMDLSVVTNKAQTTRNKIHCVFTVDRTEIVLVDTPGLHKTN 83 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + K ++ V+ ADL LLL Sbjct: 84 QELNKRLNEQAREGVDGADLNLLL 107 >gi|171780310|ref|ZP_02921214.1| hypothetical protein STRINF_02098 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281658|gb|EDT47093.1| hypothetical protein STRINF_02098 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 372 Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust. Identities = 39/111 (35%), Positives = 51/111 (45%), Gaps = 22/111 (19%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268 E +R G + ++G +N GKS+L NA+ K KD+ + PGTT D + I LD Y Sbjct: 158 EKLRKGRDVYVVGVTNVGKSTLINAIIKEITGEKDIITTSRFPGTTLDKIEIPLDDGSY- 216 Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319 I DT GI + G K LK I+ KKEI PK Sbjct: 217 --IFDTPGIIHRHQMAHYLGDKN-------------LKYISPKKEIK-PKT 251 >gi|220917393|ref|YP_002492697.1| GTP-binding protein Era [Anaeromyxobacter dehalogenans 2CP-1] gi|219955247|gb|ACL65631.1| GTP-binding protein Era [Anaeromyxobacter dehalogenans 2CP-1] Length = 310 Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust. Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 1/97 (1%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R G+ + I+G N GKS+L N + + VAIV+ P TTR + ++ G V DT G Sbjct: 10 RAGF-VAIVGRPNVGKSTLLNRVLGEHVAIVSPRPQTTRTRILGVHNVPGAQVAFFDTPG 68 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313 + + + + ++ + D +L+L E + E Sbjct: 69 LHKAKGALNRRMVETALSTLSEVDAVLMLIEAGTGPE 105 >gi|21241496|ref|NP_641078.1| ribosome biogenesis GTP-binding protein YsxC [Xanthomonas axonopodis pv. citri str. 306] gi|294627677|ref|ZP_06706259.1| GTP-binding protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294667105|ref|ZP_06732330.1| GTP-binding protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|24418373|sp|Q8PPG1|ENGB_XANAC RecName: Full=Probable GTP-binding protein EngB gi|21106841|gb|AAM35614.1| GTP-binding protein [Xanthomonas axonopodis pv. citri str. 306] gi|292598029|gb|EFF42184.1| GTP-binding protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292603115|gb|EFF46541.1| GTP-binding protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 214 Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 1/55 (1%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKD-VAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 GY++ G SNAGKSS NAL +++ +A V+ PG T+ ++ + E YLV + Sbjct: 24 GGYEVAFAGRSNAGKSSALNALTRQNALARVSKTPGRTQQLVFFQIQPERYLVDL 78 >gi|163784387|ref|ZP_02179279.1| GTP-binding protein Era [Hydrogenivirga sp. 128-5-R1-1] gi|159880342|gb|EDP73954.1| GTP-binding protein Era [Hydrogenivirga sp. 128-5-R1-1] Length = 312 Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 49/85 (57%), Gaps = 2/85 (2%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTIDLDLEGYLVKISDTAGIRET 280 + ++G N GKS+L N + V+IV+ P TTR +L + D + ++ + DT G+++ Sbjct: 22 VALVGRPNVGKSTLLNNILGVKVSIVSPKPQTTRMRILGVKHDKDAQIIFL-DTPGVQKG 80 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 DI+ K ++ +E ADLI ++ Sbjct: 81 KDILTKTVVESAVSSMEEADLIAMI 105 >gi|1033127|gb|AAA79801.1| ORF_o289 [Escherichia coli str. K-12 substr. MG1655] Length = 289 Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 35/59 (59%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 I I+G + AGKSSL NAL +V+ V+D+ TRD L L + + + I D G+ E+ Sbjct: 41 IGIMGKTGAGKSSLCNALFAGEVSPVSDVAACTRDPLRFRLQIGEHFMTIVDLPGVGES 99 >gi|302841942|ref|XP_002952515.1| Era-like protein [Volvox carteri f. nagariensis] gi|300262154|gb|EFJ46362.1| Era-like protein [Volvox carteri f. nagariensis] Length = 453 Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust. Identities = 32/80 (40%), Positives = 46/80 (57%), Gaps = 12/80 (15%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTA 275 R+GY + ++G NAGKS+L NAL + ++IVT P TTR ++ I D + Y + + DT Sbjct: 156 RSGY-VAVIGKPNAGKSTLINALVGQKLSIVTYKPQTTRHRIMGIASD-KHYQMILFDTP 213 Query: 276 GIRETDDIVEKEGIKRTFLE 295 G+ E KRT LE Sbjct: 214 GVIER---------KRTKLE 224 >gi|73667900|ref|YP_303915.1| GTP-binding protein [Methanosarcina barkeri str. Fusaro] gi|72395062|gb|AAZ69335.1| GTP-binding protein HflX [Methanosarcina barkeri str. Fusaro] Length = 436 Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust. Identities = 36/103 (34%), Positives = 55/103 (53%), Gaps = 2/103 (1%) Query: 217 RNGYKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 R G+ ++ L G++NAGKS+LFNA+ + V ++ TT +T LDL G ++DT Sbjct: 202 RKGFSLISLAGYTNAGKSTLFNAIVDESVE-AKNMLFTTLVPMTRALDLGGRKALLTDTV 260 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK 318 G E + K T E+ +DLILL+ + + K E K Sbjct: 261 GFIEDLPHWLVDAFKSTLDEIFLSDLILLVVDASEKPETILQK 303 >gi|288817910|ref|YP_003432257.1| GTP-binding protein [Hydrogenobacter thermophilus TK-6] gi|288787309|dbj|BAI69056.1| GTP-binding protein [Hydrogenobacter thermophilus TK-6] gi|308751509|gb|ADO44992.1| GTP-binding protein Obg/CgtA [Hydrogenobacter thermophilus TK-6] Length = 343 Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust. Identities = 54/164 (32%), Positives = 77/164 (46%), Gaps = 34/164 (20%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRET 280 I I+G NAGKS+L + L K I D P TT + + LE G + ++D G+ E Sbjct: 161 IGIIGLPNAGKSTLISKLTKAKPKI-ADYPFTTLSPVLGVMQLEDGRRIVLADIPGLIE- 218 Query: 281 DDIVEKEGIKRTFLE-VENADLILLL---------------KEINSKKEISFPKNID--F 322 D +G+ FL +E L+L L K++N++ E PK ++ Sbjct: 219 -DASAGKGLGLEFLRHIERTKLLLHLIDVSDLRQTDPVDAFKKVNAEMEKYHPKLLEKRQ 277 Query: 323 IFIGTKSDLYS------TYTEEYDHL------ISSFTGEGLEEL 354 I +GTK D+ S EE+ + ISS TGEGLEEL Sbjct: 278 IVVGTKIDMLSDKNTLQKLEEEFSKMGYPFVAISSHTGEGLEEL 321 >gi|258541745|ref|YP_003187178.1| GTP-binding protein Era [Acetobacter pasteurianus IFO 3283-01] gi|256632823|dbj|BAH98798.1| GTP-binding protein Era [Acetobacter pasteurianus IFO 3283-01] gi|256635880|dbj|BAI01849.1| GTP-binding protein Era [Acetobacter pasteurianus IFO 3283-03] gi|256638935|dbj|BAI04897.1| GTP-binding protein Era [Acetobacter pasteurianus IFO 3283-07] gi|256641989|dbj|BAI07944.1| GTP-binding protein Era [Acetobacter pasteurianus IFO 3283-22] gi|256645044|dbj|BAI10992.1| GTP-binding protein Era [Acetobacter pasteurianus IFO 3283-26] gi|256648099|dbj|BAI14040.1| GTP-binding protein Era [Acetobacter pasteurianus IFO 3283-32] gi|256651152|dbj|BAI17086.1| GTP-binding protein Era [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654143|dbj|BAI20070.1| GTP-binding protein Era [Acetobacter pasteurianus IFO 3283-12] Length = 300 Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 82/171 (47%), Gaps = 24/171 (14%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTIDLDLEGYLVKIS 272 + R G+ ++ G NAGKS+L N +A ++IV+ TTR VL I + ++ + Sbjct: 4 DTTRCGFAALV-GAPNAGKSTLLNRMAGAKLSIVSPKAQTTRFRVLGILMRGHSQILLV- 61 Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS----------------KKEISF 316 DT GI +++ + + E+AD+ LLL + S K+++ Sbjct: 62 DTPGIFRPRRKLDRAMVAAAWTGAEDADITLLLVDARSGLTEAVQTIIERLAETKRKVWL 121 Query: 317 PKN-IDFIFIGTKSDLYSTYTE----EYDHLISSFTGEGLEELINKIKSIL 362 N D + L ++ TE E+ ++S+ TG G+E+L++K+ + L Sbjct: 122 VLNKTDLVPATALLPLTASITEKLPVEHVFMVSARTGNGVEDLLDKLAASL 172 >gi|154253315|ref|YP_001414139.1| GTP-binding protein Era [Parvibaculum lavamentivorans DS-1] gi|154157265|gb|ABS64482.1| GTP-binding protein Era [Parvibaculum lavamentivorans DS-1] Length = 318 Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust. Identities = 37/116 (31%), Positives = 61/116 (52%), Gaps = 7/116 (6%) Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISD 273 I R G+ + I+G NAGKS+L N L VAIVT TTR + + +EG + D Sbjct: 22 ITRCGF-VAIIGAPNAGKSTLLNQLVGSKVAIVTHKVQTTRSRIR-GIAMEGNTQIVFVD 79 Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKS 329 T GI + +++ + + ++DLI+L+ ++ S ++ ++D I G KS Sbjct: 80 TPGIFKPKRRLDRAMVDAAWGGAGDSDLIVLMVDMESGRD----SDVDRILEGLKS 131 >gi|320547439|ref|ZP_08041726.1| GTP-binding protein [Streptococcus equinus ATCC 9812] gi|320447916|gb|EFW88672.1| GTP-binding protein [Streptococcus equinus ATCC 9812] Length = 372 Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust. Identities = 39/111 (35%), Positives = 51/111 (45%), Gaps = 22/111 (19%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268 E +R G + ++G +N GKS+L NA+ K KD+ + PGTT D + I LD Y Sbjct: 158 EKLRKGRDVYVVGVTNVGKSTLINAIIKEITGEKDIITTSRFPGTTLDKIEIPLDDGSY- 216 Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319 I DT GI + G K LK I+ KKEI PK Sbjct: 217 --IFDTPGIIHRHQMAHYLGDKN-------------LKYISPKKEIK-PKT 251 >gi|209528109|ref|ZP_03276585.1| GTP-binding protein Era [Arthrospira maxima CS-328] gi|209491468|gb|EDZ91847.1| GTP-binding protein Era [Arthrospira maxima CS-328] Length = 310 Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust. Identities = 45/181 (24%), Positives = 71/181 (39%), Gaps = 29/181 (16%) Query: 219 GYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 GYK + I+G N GKS+L N L + +AI + I TTR+ L L E + DT Sbjct: 15 GYKSGFVGIIGRPNVGKSTLMNKLVGQKIAITSPIAQTTRNRLRGILTTESAQIIFVDTP 74 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKE------------INSKKEISFPKNIDFI 323 GI + + K +K L + + D+++ + + ++ P + Sbjct: 75 GIHKPHHQLGKVLVKNAKLAIASVDVLVFVVDSSVMSGGGDRYIVDLLTHTKVPVILGLN 134 Query: 324 FIGTKSDLYSTYTEEYDHL----------ISSFTGEGLEELINKIKSILSNKFKKLPFSI 373 + D Y + Y S+ TG GLE L N +L N P+ Sbjct: 135 KWDLQPDQYEAIDQSYQQFAEANQWQMVKFSASTGAGLETLQN----LLINSLDPGPYYY 190 Query: 374 P 374 P Sbjct: 191 P 191 >gi|15611694|ref|NP_223345.1| ferrous IRON transport protein B [Helicobacter pylori J99] gi|76364189|sp|Q9ZLF3|FEOB_HELPJ RecName: Full=Ferrous iron transport protein B gi|4155172|gb|AAD06199.1| FERROUS IRON TRANSPORT PROTEIN B [Helicobacter pylori J99] Length = 642 Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKSSL NAL+ + V + G T D + + L + + + I D G + Sbjct: 6 VALVGQPNVGKSSLINALSNAHLK-VGNFAGVTVDKMEVSLIHKDHQITIIDLPGTYALN 64 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 D +E + + FLE DLIL Sbjct: 65 DFTTEEKVTKDFLEKGQYDLIL 86 >gi|23011756|ref|ZP_00052024.1| COG2262: GTPases [Magnetospirillum magnetotacticum MS-1] Length = 376 Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 79/188 (42%), Gaps = 31/188 (16%) Query: 217 RNGYKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDT 274 R Y IV L G++NAGKS+LFNAL K +V D+ T D L G V +SDT Sbjct: 130 RVPYPIVALVGYTNAGKSTLFNALTKAEVK-AQDMLFATLDPTARATKLPHGETVILSDT 188 Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK-------------KEISFPKNID 321 G + T +V AD++L +++++ +E+ + D Sbjct: 189 VGFISDLPTSLIAAFRATLEDVIEADILLHVRDVSHGDTQAQAEDVEAVLRELGIKADAD 248 Query: 322 FIF-IGTKSDLYS--------------TYTEEYDHLISSFTGEGLEELINKIKSILSNKF 366 I + K+DL T L+S+ TGEGL L +I+S ++ Sbjct: 249 RIIEVWNKADLLDEGERTRLLNLSAAHRGTGPAPILVSALTGEGLPALAERIESQVARAR 308 Query: 367 KKLPFSIP 374 S+P Sbjct: 309 STFAVSLP 316 >gi|329114469|ref|ZP_08243231.1| GTP-binding protein Era-like protein [Acetobacter pomorum DM001] gi|326696545|gb|EGE48224.1| GTP-binding protein Era-like protein [Acetobacter pomorum DM001] Length = 300 Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 82/171 (47%), Gaps = 24/171 (14%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTIDLDLEGYLVKIS 272 + R G+ ++ G NAGKS+L N +A ++IV+ TTR VL I + ++ + Sbjct: 4 DTTRCGFAALV-GAPNAGKSTLLNRMAGAKLSIVSPKAQTTRFRVLGILMRGHSQILLV- 61 Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS----------------KKEISF 316 DT GI +++ + + E+AD+ LLL + S K+++ Sbjct: 62 DTPGIFRPRRKLDRAMVAAAWTGAEDADITLLLVDARSGLTEAVQTIIERLAETKRKVWL 121 Query: 317 PKN-IDFIFIGTKSDLYSTYTE----EYDHLISSFTGEGLEELINKIKSIL 362 N D + L ++ TE E+ ++S+ TG G+E+L++K+ + L Sbjct: 122 VLNKTDLVPATALLPLTASITEKLPVEHVFMVSARTGNGVEDLLDKLAASL 172 >gi|209964795|ref|YP_002297710.1| GTP-binding protein Era [Rhodospirillum centenum SW] gi|209958261|gb|ACI98897.1| GTP-binding protein Era [Rhodospirillum centenum SW] Length = 340 Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust. Identities = 45/186 (24%), Positives = 87/186 (46%), Gaps = 33/186 (17%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTA 275 R G+ I ++G NAGKS+L NAL V+IV+ TTR VL I + + L+ + DT Sbjct: 46 RCGF-IALVGAPNAGKSTLLNALVGAKVSIVSPKVQTTRSRVLGIGITGDSQLLFV-DTP 103 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK----------------------- 312 GI + +++ + + +ADLI++L + ++ + Sbjct: 104 GIFKPKRRLDRAMVAAAWQGATDADLIVMLYDASNDRLDEDTLGIIERLKEAGRTAILAL 163 Query: 313 -EISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371 ++ K + + + D + +T + +IS+ TG+GL +L + L+ + + P+ Sbjct: 164 NKVDLIKREKLLKLAAELDSHGIFTRTF--MISALTGDGLADL----SAFLAAEVPEGPW 217 Query: 372 SIPSHK 377 P+ + Sbjct: 218 LYPADQ 223 >gi|163839487|ref|YP_001623892.1| GTP-binding protein [Renibacterium salmoninarum ATCC 33209] gi|162952963|gb|ABY22478.1| GTP-binding protein [Renibacterium salmoninarum ATCC 33209] Length = 526 Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 74/182 (40%), Gaps = 41/182 (22%) Query: 223 VILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 I G++NAGKSS+ N L V A+ + T R T D G ++DT G Sbjct: 308 AIAGYTNAGKSSILNRLTHAGVLVQNALFATLDPTVRKAATPD----GIGFTLADTVGFV 363 Query: 279 ETDDIVEKEGIKRTFLEVENADLIL-------------------LLKEINSKKEISFPKN 319 + E + T EV +ADLIL +L E++++K Sbjct: 364 RSLPTQLVEAFRSTLEEVADADLILHVVDVSHPDPEGQIAAVREVLSEVDARK------- 416 Query: 320 IDFIFIGTKSDLYS-------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372 I I + K+D T E L+S+ TG+G++EL+ I + +L Sbjct: 417 IPEIIVLNKADAADPLVIQRLTQRETRSVLVSARTGQGIDELLELISQAIPRPGVELELM 476 Query: 373 IP 374 IP Sbjct: 477 IP 478 >gi|311739636|ref|ZP_07713471.1| GTP-binding protein HflX [Corynebacterium pseudogenitalium ATCC 33035] gi|311305452|gb|EFQ81520.1| GTP-binding protein HflX [Corynebacterium pseudogenitalium ATCC 33035] Length = 497 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 54/206 (26%), Positives = 88/206 (42%), Gaps = 36/206 (17%) Query: 221 KIVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 +I I G++NAGKSSL NA+ V A+ + TTR D G V +DT G Sbjct: 270 QIAIAGYTNAGKSSLINAMTGAGVLVEDALFATLDPTTRRATLAD----GRQVVFTDTVG 325 Query: 277 IRETDDIVEKEGIKRTFLEVENADLIL---------LLKEINSKKEISF----------P 317 E K T EV AD++L LK+I + ++ + P Sbjct: 326 FVRHLPTQLVEAFKSTLEEVLAADIMLHVVDGSDPFPLKQIEAVNQVIYDIVSETGEQAP 385 Query: 318 KNIDFIFIGTKSD--LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPF 371 I I ++D + + DH +S+ TGEG++EL +++ L+++ + Sbjct: 386 PEIIVINKIDQADPLVLAELRHVLDHEDVVYVSARTGEGIDELTARVELFLNSRDSHVKL 445 Query: 372 SIPSHKRHL---YHLSQTVRYLEMAS 394 +P + + H TVR+ E + Sbjct: 446 QVPFTRGDVVARVHAEGTVRHEEYTA 471 >gi|223986425|ref|ZP_03636430.1| hypothetical protein HOLDEFILI_03742 [Holdemania filiformis DSM 12042] gi|223961621|gb|EEF66128.1| hypothetical protein HOLDEFILI_03742 [Holdemania filiformis DSM 12042] Length = 281 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 14/124 (11%) Query: 155 SSLYGQWIDKLTHIRSF-IEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLG 213 + + QWI+KL + I ADL + KEV+ K I I +G Sbjct: 65 AEITQQWIEKLKDDTTLVIAADLLHDSFVPKLTQACKEVM------KEKIERMIRRGIRP 118 Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273 IR +++G N GKS++ N LA K +A D PG TR + + L+ + V++ D Sbjct: 119 RAIRA----MVVGVPNVGKSTMINRLAGKKIAQTADRPGVTRSLQWVKLNKD---VELLD 171 Query: 274 TAGI 277 T G+ Sbjct: 172 TPGV 175 >gi|218441386|ref|YP_002379715.1| GTP-binding protein Era [Cyanothece sp. PCC 7424] gi|218174114|gb|ACK72847.1| GTP-binding protein Era [Cyanothece sp. PCC 7424] Length = 318 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 3/96 (3%) Query: 215 IIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 I G+K + I+G N GKS+L N L + +AI + + TTR+ L L + Sbjct: 18 IAPEGFKSGFVAIIGRPNVGKSTLMNQLVGQKIAITSPVAQTTRNRLQGILTTSEAQIIF 77 Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307 DT GI + + K +K + + DL+LL+ + Sbjct: 78 VDTPGIHKPHHELGKVLVKNAQMAINAVDLVLLVAD 113 >gi|212633665|ref|YP_002310190.1| GTP-binding protein HflX [Shewanella piezotolerans WP3] gi|212555149|gb|ACJ27603.1| GTP-binding protein HflX [Shewanella piezotolerans WP3] Length = 431 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 65/228 (28%), Positives = 100/228 (43%), Gaps = 36/228 (15%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAG-IRE 279 + ++G++NAGKS+LFNAL DV + T L L+L +G++V ++DT G IR Sbjct: 200 VSLVGYTNAGKSTLFNALTASDVYAADQLFATLDPTLR-KLELPDGHIV-LADTVGFIRH 257 Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEI-------NSKKEISFPKNIDF-----IFIG 326 D+V K T E ADL+L + + N ++ S K ID + I Sbjct: 258 LPHDLV--AAFKATLQETRQADLLLHVVDSADENMADNFEQVQSVLKEIDADEIPQLIIC 315 Query: 327 TKSDLYSTYTEEYDH---------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377 K DL D+ +S+ +GLE + I ++ K+L IP+ Sbjct: 316 NKIDLLDEVKPRIDYDDEGKPIRVWVSAQQQKGLELVQEAINDLVGKAVKELALQIPASA 375 Query: 378 RHLYHLSQTVRYLEMASLNEKDCGLDIIAENL------RLASVSLGKI 419 H +L Q + + D G +I+ L RL SLG+I Sbjct: 376 GH--YLGQFYKLDVIQQKEYDDLGNCMISVRLLEADWRRLVKQSLGEI 421 >gi|325928435|ref|ZP_08189626.1| cell division checkpoint GTPase YihA [Xanthomonas perforans 91-118] gi|119369279|sp|Q3BXK1|ENGB_XANC5 RecName: Full=Probable GTP-binding protein EngB gi|325541152|gb|EGD12703.1| cell division checkpoint GTPase YihA [Xanthomonas perforans 91-118] Length = 207 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 1/55 (1%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKD-VAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 GY++ G SNAGKSS NAL +++ +A V+ PG T+ ++ + E YLV + Sbjct: 24 GGYEVAFAGRSNAGKSSALNALTRQNALARVSKTPGRTQQLVFFQIQPERYLVDL 78 >gi|313672984|ref|YP_004051095.1| ferrous iron transport protein b [Calditerrivibrio nitroreducens DSM 19672] gi|312939740|gb|ADR18932.1| ferrous iron transport protein B [Calditerrivibrio nitroreducens DSM 19672] Length = 646 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 2/85 (2%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIR 278 +K++++G+ N GKS+LF L+ K V+ V++ PGTT D+ + E + ++ DT G Sbjct: 7 FKVLLIGNPNVGKSALFYRLSGKYVS-VSNYPGTTVDITRGKTKVGEHHEIEFIDTPGFY 65 Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303 I E+E + + L E D++L Sbjct: 66 NLMTITEEEKVTKKLLLEETPDVVL 90 >gi|148977011|ref|ZP_01813657.1| putative GTPase YlqF [Vibrionales bacterium SWAT-3] gi|145963671|gb|EDK28932.1| putative GTPase YlqF [Vibrionales bacterium SWAT-3] Length = 311 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 56/104 (53%), Gaps = 13/104 (12%) Query: 178 FSEEEDVQNF----SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233 F +E+ V+ S KE +N I+ L ++ H + ++G+ IR +I+G N GKS Sbjct: 75 FEKEQGVKAIAITTSVKEEVNHIMELVRKLAPH--REEIGKNIRT----MIMGIPNVGKS 128 Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 ++ N LA + +A+ + P TR I+L G + +SDT GI Sbjct: 129 TIINCLAGRTIAVTGNQPAVTRRQQRINLQ-NGVI--LSDTPGI 169 >gi|288906055|ref|YP_003431277.1| GTP-binding protein [Streptococcus gallolyticus UCN34] gi|306832095|ref|ZP_07465249.1| ribosome biogenesis GTPase YqeH [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325979020|ref|YP_004288736.1| GTP-binding protein engA [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288732781|emb|CBI14355.1| putative conserved GTP-binding protein [Streptococcus gallolyticus UCN34] gi|304425534|gb|EFM28652.1| ribosome biogenesis GTPase YqeH [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325178948|emb|CBZ48992.1| GTP-binding protein engA [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 372 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 39/111 (35%), Positives = 51/111 (45%), Gaps = 22/111 (19%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268 E +R G + ++G +N GKS+L NA+ K KD+ + PGTT D + I LD Y Sbjct: 158 EKLRRGRDVYVVGVTNVGKSTLINAIIKEITGEKDIITTSRFPGTTLDKIEIPLDDGSY- 216 Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319 I DT GI + G K LK I+ KKEI PK Sbjct: 217 --IFDTPGIIHRHQMAHYLGDKN-------------LKYISPKKEIK-PKT 251 >gi|183597426|ref|ZP_02958919.1| hypothetical protein PROSTU_00690 [Providencia stuartii ATCC 25827] gi|183601093|ref|ZP_02962586.1| hypothetical protein PROSTU_04720 [Providencia stuartii ATCC 25827] gi|188019435|gb|EDU57475.1| hypothetical protein PROSTU_04720 [Providencia stuartii ATCC 25827] gi|188023258|gb|EDU61298.1| hypothetical protein PROSTU_00690 [Providencia stuartii ATCC 25827] Length = 290 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 21/71 (29%), Positives = 38/71 (53%) Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269 +L ++I I ++G + AGKSSL NAL + ++ V+D+ G TR + + + + Sbjct: 24 NQLSQLINYSPTIGLMGKTGAGKSSLLNALFQSQLSPVSDVSGCTRQAQRFSMTMNNHTL 83 Query: 270 KISDTAGIRET 280 D G+ E+ Sbjct: 84 TFIDLPGVGES 94 >gi|21232826|ref|NP_638743.1| ribosome biogenesis GTP-binding protein YsxC [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767103|ref|YP_241865.1| ribosome biogenesis GTP-binding protein YsxC [Xanthomonas campestris pv. campestris str. 8004] gi|24418370|sp|Q8P5E4|ENGB_XANCP RecName: Full=Probable GTP-binding protein EngB gi|81306913|sp|Q4UYM8|ENGB_XANC8 RecName: Full=Probable GTP-binding protein EngB gi|21114651|gb|AAM42667.1| GTP-binding protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66572435|gb|AAY47845.1| GTP-binding protein [Xanthomonas campestris pv. campestris str. 8004] Length = 207 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 1/55 (1%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKD-VAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 GY++ G SNAGKSS NAL +++ +A V+ PG T+ ++ + E YLV + Sbjct: 24 GGYEVAFAGRSNAGKSSALNALTRQNSLARVSKTPGRTQQLVFFQIQPERYLVDL 78 >gi|306834207|ref|ZP_07467327.1| ribosome biogenesis GTPase YqeH [Streptococcus bovis ATCC 700338] gi|304423780|gb|EFM26926.1| ribosome biogenesis GTPase YqeH [Streptococcus bovis ATCC 700338] Length = 372 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 39/111 (35%), Positives = 51/111 (45%), Gaps = 22/111 (19%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268 E +R G + ++G +N GKS+L NA+ K KD+ + PGTT D + I LD Y Sbjct: 158 EKLRRGRDVYVVGVTNVGKSTLINAIIKEITGEKDIITTSRFPGTTLDKIEIPLDDGSY- 216 Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319 I DT GI + G K LK I+ KKEI PK Sbjct: 217 --IFDTPGIIHRHQMAHYLGDKN-------------LKYISPKKEIK-PKT 251 >gi|300857358|ref|YP_003782342.1| small GTP-binding protein domain-containing protein [Clostridium ljungdahlii DSM 13528] gi|300437473|gb|ADK17240.1| Small GTP-binding protein domain protein [Clostridium ljungdahlii DSM 13528] Length = 411 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 27/58 (46%), Positives = 38/58 (65%), Gaps = 3/58 (5%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDTAGI 277 I + G NAGKSS+ NAL +D+AIV+D+ GTT D + +++ G V I DTAG+ Sbjct: 14 IALFGKRNAGKSSIINALTGQDIAIVSDVRGTTTDPVYKSMEILPIGPCV-IIDTAGL 70 >gi|326791151|ref|YP_004308972.1| GTP-binding protein Era [Clostridium lentocellum DSM 5427] gi|326541915|gb|ADZ83774.1| GTP-binding protein Era [Clostridium lentocellum DSM 5427] Length = 302 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 1/96 (1%) Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 + E ++G+ + I+G N GKS+L N L + VAI+++ P TTR+ + L + Y Sbjct: 1 MKEPFKSGF-VSIIGRPNVGKSTLMNKLIGEKVAIMSNKPQTTRNRIQTVLTTKHYQAVF 59 Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307 DT GI + + + +K + D I L E Sbjct: 60 IDTPGIHTPKNKLGEFMVKSAMTTLNEVDAIFYLVE 95 >gi|242242875|ref|ZP_04797320.1| GTP-binding protein [Staphylococcus epidermidis W23144] gi|242233650|gb|EES35962.1| GTP-binding protein [Staphylococcus epidermidis W23144] Length = 366 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 38/149 (25%), Positives = 69/149 (46%), Gaps = 19/149 (12%) Query: 216 IRNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270 +RN + I+G +N GKS+L N L +KDV + PGTT D++ I LD + ++ Sbjct: 157 VRNKDDVYIVGTTNVGKSTLINKLIEQSVGEKDVVTTSRFPGTTLDMIDIPLDEKSFMF- 215 Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP--KNIDFI----- 323 DT GI ++ + + + ++ + ++N K+ + F ID++ Sbjct: 216 --DTPGIIQSHQMTNYVSENELKIIIPKNEVKQRVYQLNEKQTLFFGGLARIDYVSGGKR 273 Query: 324 ----FIGTKSDLYSTYTEEYDHLISSFTG 348 F +++ T TE+ + L S G Sbjct: 274 PLVCFFSNDLNIHRTKTEKANDLWKSQLG 302 >gi|84625320|ref|YP_452692.1| GTPase EngB [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|166710592|ref|ZP_02241799.1| GTPase EngB [Xanthomonas oryzae pv. oryzicola BLS256] gi|188575232|ref|YP_001912161.1| ribosome biogenesis GTP-binding protein YsxC [Xanthomonas oryzae pv. oryzae PXO99A] gi|119369280|sp|Q2NZ59|ENGB_XANOM RecName: Full=Probable GTP-binding protein EngB gi|119369281|sp|Q5GVY6|ENGB_XANOR RecName: Full=Probable GTP-binding protein EngB gi|238689455|sp|B2SNS8|ENGB_XANOP RecName: Full=Probable GTP-binding protein EngB gi|84369260|dbj|BAE70418.1| GTP-binding protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188519684|gb|ACD57629.1| GTP-binding protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 207 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 1/55 (1%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKD-VAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 GY++ G SNAGKSS NAL +++ +A V+ PG T+ ++ + E YLV + Sbjct: 24 GGYEVAFAGRSNAGKSSALNALTRQNALARVSKTPGRTQQLVFFQIQPERYLVDL 78 >gi|332885465|gb|EGK05714.1| ribosome biogenesis GTPase RsgA 1 [Dysgonomonas mossii DSM 22836] Length = 351 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 68/145 (46%), Gaps = 6/145 (4%) Query: 173 EADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232 +ADL+F E+E + N + K + + + L I + +L E I G +V +G S GK Sbjct: 149 KADLEF-EKESISN-AIKHIGDRMPVLFTSIHQPQTIIQLREFIAEGETVVFVGSSGVGK 206 Query: 233 SSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS----DTAGIRETDDIVEKEG 288 SSL NAL ++ + + +DI +T E L+K S DT G+RE +E Sbjct: 207 SSLVNALCEESILLTSDISSSTGKGRHTSTRREMVLMKGSGVLIDTPGVREFGLAIENPD 266 Query: 289 IKRTFLEVENADLILLLKEINSKKE 313 LE+ + + + K+ E Sbjct: 267 SLSGMLEISDYEGLCRFKDCEHTNE 291 >gi|325292415|ref|YP_004278279.1| GTP-binding protein Era [Agrobacterium sp. H13-3] gi|325060268|gb|ADY63959.1| GTP-binding protein Era [Agrobacterium sp. H13-3] Length = 316 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 46/181 (25%), Positives = 84/181 (46%), Gaps = 30/181 (16%) Query: 203 ISSHISQGKLGEII----RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 ++ H + GE I R+G+ + ++G +NAGKS+L N L V+IV+ TTR V+ Sbjct: 4 MTDHENPAVAGEDIALPTRSGF-VALIGPTNAGKSTLVNRLVGAKVSIVSHKVQTTRAVM 62 Query: 259 TIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL-------------- 304 + + DT GI + +++ + + ++ADLILL Sbjct: 63 RGIAIHKNAQIVFMDTPGIFKPRRRLDRAMVTSAWGGAKDADLILLLIDSERGLKGDAEA 122 Query: 305 ----LKEINSKK-----EISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELI 355 LK++ KK +I K D + + ++ + T+ + +IS+ G G E+L+ Sbjct: 123 ILEGLKDVPQKKILCLNKIDQVKREDLLKLAAAANEHVTFDRTF--MISATNGSGCEDLM 180 Query: 356 N 356 + Sbjct: 181 D 181 >gi|317014104|gb|ADU81540.1| ferrous iron transport protein B [Helicobacter pylori Gambia94/24] Length = 642 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKSSL NAL+ + V + G T D + + L + + + I D G + Sbjct: 6 VALVGQPNVGKSSLINALSNAHLK-VGNFAGVTVDKMEVSLVHKEHQITIIDLPGTYALN 64 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 D +E + + FLE DLIL Sbjct: 65 DFTTEEKVTKDFLEKGQYDLIL 86 >gi|260575069|ref|ZP_05843070.1| GTP-binding proten HflX [Rhodobacter sp. SW2] gi|259022691|gb|EEW25986.1| GTP-binding proten HflX [Rhodobacter sp. SW2] Length = 412 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 47/188 (25%), Positives = 78/188 (41%), Gaps = 31/188 (16%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280 + ++G++NAGKS+LFN + +V + D+ T D L L G + ISDT G Sbjct: 194 VALVGYTNAGKSTLFNRMTGAEV-LAKDMLFATLDPTMRGLVLPSGRKIIISDTVGF--I 250 Query: 281 DDIVEK--EGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEE 338 D+ + + T EV ADLIL +++I+ + ++ I + E Sbjct: 251 SDLPTQLVAAFRATLEEVLEADLILHVRDISHPESAEQAADVAKILAALGVKAATPQIEI 310 Query: 339 YDHL-----------------------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP- 374 ++ L +S+ TGEGL EL+ I L ++P Sbjct: 311 WNKLDLVQGAMRDGLVQQAQGRDGVMALSALTGEGLPELLEAISRAFDEAKSDLRLTLPF 370 Query: 375 -SHKRHLY 381 +RH + Sbjct: 371 SEGRRHAW 378 >gi|254779329|ref|YP_003057434.1| Ferrous iron transport protein B; putative membrane protein [Helicobacter pylori B38] gi|254001240|emb|CAX29215.1| Ferrous iron transport protein B; putative membrane protein [Helicobacter pylori B38] Length = 642 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKSSL NAL+ + V + G T D + + L + + + I D G + Sbjct: 6 IALVGQPNVGKSSLINALSNAHLK-VGNFAGVTVDKMEVGLIHKEHQITIIDLPGTYALN 64 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 D +E + + FLE DLIL Sbjct: 65 DFTTEEKVTKDFLEKGQYDLIL 86 >gi|218438310|ref|YP_002376639.1| small GTP-binding protein [Cyanothece sp. PCC 7424] gi|218171038|gb|ACK69771.1| small GTP-binding protein [Cyanothece sp. PCC 7424] Length = 529 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 52/182 (28%), Positives = 89/182 (48%), Gaps = 24/182 (13%) Query: 182 EDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 + +Q+ S+E L L +I +++++G+L ++V+ G +AGK+SL NAL Sbjct: 106 QQIQDKVSQEAL---LSRSQEIEANLARGEL--------RVVVFGTGSAGKTSLVNALIG 154 Query: 242 KDVAIVTDIPGTTRDVLTIDLDLEGYL--VKISDTAGIRETDDI-VEKEGIKRTFLEVEN 298 + V V GTT+ T L L+G + I+DT GI E E+E + R Sbjct: 155 EMVGNVEATMGTTQIGQTYRLKLKGITREILITDTPGILEAGIAGTEREKLARQL--ATE 212 Query: 299 ADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKI 358 ADL+L + + + ++ P + + IG +S L T+ Y T E E ++N++ Sbjct: 213 ADLLLFVIDNDLRQSEYDPLRM-LVEIGKRSLLIFNKTDLY-------TDEDQEVILNQL 264 Query: 359 KS 360 K Sbjct: 265 KQ 266 >gi|229822006|ref|YP_002883532.1| GTPase EngC [Beutenbergia cavernae DSM 12333] gi|229567919|gb|ACQ81770.1| GTPase EngC [Beutenbergia cavernae DSM 12333] Length = 352 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 39/142 (27%), Positives = 65/142 (45%), Gaps = 7/142 (4%) Query: 161 WIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGY 220 W T + +ADL + V + + + D+L + ++ + +L E I G Sbjct: 135 WRSGATPLVVLTKADLVDDAADWVADVGAVALGVDVLAVS--ATTGLGMSELRERIAPGT 192 Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID----LDLEGYLVKISDTAG 276 +V++G S AGKS+L NALA +V D G + T + L G I DT G Sbjct: 193 TLVVVGPSGAGKSTLVNALAGTEVMATGDRRGDGKGRHTTSHRELVPLPGGATLI-DTPG 251 Query: 277 IRETDDIVEKEGIKRTFLEVEN 298 +R + + + +TF +VE+ Sbjct: 252 LRAVGLVATPDAVAKTFSDVED 273 >gi|295111471|emb|CBL28221.1| GTPase of unknown function. [Synergistetes bacterium SGP1] Length = 81 Score = 45.1 bits (105), Expect = 0.025, Method: Composition-based stats. Identities = 23/53 (43%), Positives = 30/53 (56%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 I+G N GKSSLFN L + +IV D PG TRD + + + G + DT G Sbjct: 6 IIGRPNVGKSSLFNRLIGRRESIVDDAPGVTRDRIYGEAEWRGRSFYVIDTGG 58 >gi|219670281|ref|YP_002460716.1| GTP-binding protein Era [Desulfitobacterium hafniense DCB-2] gi|219540541|gb|ACL22280.1| GTP-binding protein Era [Desulfitobacterium hafniense DCB-2] Length = 303 Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust. Identities = 48/175 (27%), Positives = 76/175 (43%), Gaps = 29/175 (16%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R+G+ + ++G NAGKS+L N L + + I++D P TTR+ + L E V DT G Sbjct: 11 RSGF-VTVVGRPNAGKSTLLNQLLGQKILIMSDKPQTTRNKIHCILTEERGQVVFLDTPG 69 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK------------KEISFP-----KN 319 I + + + + + DLIL + + ++ K + P Sbjct: 70 IHKPKHKLGEFMVDSALESLREVDLILYMVDTTAEFGAGEEYILENLKHVKTPCILLLNK 129 Query: 320 IDFIFIGTKSDLYSTYTEEYDHL----ISSFTGEGLEELINKIKSILSNKFKKLP 370 ID I L Y+ D L IS+ TGE +EL+ I FK++P Sbjct: 130 IDLIEKDKLLKLIKDYSALKDFLAILPISAKTGENKDELLKLI-------FKEMP 177 >gi|330507073|ref|YP_004383501.1| GTP-binding protein HflX [Methanosaeta concilii GP-6] gi|328927881|gb|AEB67683.1| GTP-binding protein HflX [Methanosaeta concilii GP-6] Length = 415 Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust. Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 5/95 (5%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I + G++NAGKS+L N L V D P TT T L++ G ++DT G D Sbjct: 190 IALAGYTNAGKSTLLNTLTGS-VVNAQDQPFTTLSPTTRALEINGRRTMLTDTVGF--ID 246 Query: 282 DIVE--KEGIKRTFLEVENADLILLLKEINSKKEI 314 D+ + + T E+ ADL+LL+ +++ E+ Sbjct: 247 DLPHFLIKAFQSTLSEIAQADLVLLVADLSDPLEL 281 >gi|294794217|ref|ZP_06759353.1| GTP-binding protein [Veillonella sp. 3_1_44] gi|294454547|gb|EFG22920.1| GTP-binding protein [Veillonella sp. 3_1_44] Length = 428 Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 1/67 (1%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAG 276 N I G NAGKS+L N L + V++V+D+ GTT D ++ ++ L V I+DTAG Sbjct: 8 NRIHIGFFGRCNAGKSTLINMLTGQPVSLVSDVAGTTTDPVSKAMEILPLGPVVITDTAG 67 Query: 277 IRETDDI 283 I +T ++ Sbjct: 68 IDDTTEL 74 >gi|268679661|ref|YP_003304092.1| GTP-binding protein Era [Sulfurospirillum deleyianum DSM 6946] gi|268617692|gb|ACZ12057.1| GTP-binding protein Era [Sulfurospirillum deleyianum DSM 6946] Length = 296 Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 1/89 (1%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 + GY + ++G NAGKSSL N L + +A+V+ TR L I E + DT G Sbjct: 6 KTGY-VAVIGRPNAGKSSLLNWLIGEKLALVSHKANATRKRLNIIAMHENTQIIFIDTPG 64 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL 305 I E + ++ + ++ + + DLIL L Sbjct: 65 IHEQERLLNQFMLEEAMKAMGDCDLILFL 93 >gi|78499699|gb|ABB45853.1| hypothetical protein [Eutrema halophilum] Length = 429 Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust. Identities = 56/251 (22%), Positives = 106/251 (42%), Gaps = 60/251 (23%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R+GY + +LG N GKS+L N + + ++IVTD P TTR + Y + + DT G Sbjct: 130 RSGY-VAVLGMPNVGKSTLSNQMIGQKISIVTDKPQTTRHRILGICSSPEYQMILYDTPG 188 Query: 277 IRETD----DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF-------- 324 + E D + + ++ + NAD +++L + P NI+ + Sbjct: 189 VIEKKMHRLDTMMMKNVRDAAI---NADCVVVLVD-----ACKMPANIEEVLKEGLGNLE 240 Query: 325 -------------------IGTKSDLYSTYTEEYDHLI--SSFTGEGLEELINKIKSILS 363 I K + Y +T + D +I S+ G G+E++ I S Sbjct: 241 KRPPMLLVMNKKDLIKPGEIAKKLEWYEKFT-DVDEVIPVSAKYGHGVEDVKEWILS--- 296 Query: 364 NKFKKLPFSIPSHKRHL-------YHLSQTVR---YLEMASLNEKDCGLDIIAENLRLAS 413 KLPF P + + + + +++ VR +++ + C +++++ R A+ Sbjct: 297 ----KLPFGPPYYPKDIVSEHPERFFVAEIVREKIFMQYRNEVPYACQVNVLSYKTRPAA 352 Query: 414 VSLGKITGCVD 424 ++ VD Sbjct: 353 KDFIQVEVVVD 363 >gi|73662763|ref|YP_301544.1| GTPase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72495278|dbj|BAE18599.1| putative GTPase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 411 Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 8/88 (9%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVA----IVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 +++ ++G++NAGKSS FNALAK+ + + TR + D G+ + ISDT Sbjct: 206 FQVALVGYTNAGKSSWFNALAKESTYEKKLLFATLDPKTRQIQIND----GFNLIISDTV 261 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLIL 303 G + K T E +NADL+L Sbjct: 262 GFIQKLPTTLIAAFKSTLEEAKNADLLL 289 >gi|71408039|ref|XP_806448.1| small GTP-binding protein [Trypanosoma cruzi strain CL Brener] gi|70870198|gb|EAN84597.1| small GTP-binding protein, putative [Trypanosoma cruzi] Length = 571 Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 11/94 (11%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVA-----IVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 ++ I+G N+GKSSLFN L++ IV D G TRD + LEG I DT Sbjct: 104 RVAIVGRMNSGKSSLFNLLSEDPTMPHRKNIVRDFDGITRDSVEGHAQLEGMHFTIIDTP 163 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309 G +V + ++ F VE AD + + ++ Sbjct: 164 G------MVNGKLVEEAFRTVETADAAIFVTSVD 191 Score = 39.7 bits (91), Expect = 0.98, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 34/57 (59%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 +I ++G +N+GKSSL N L + + D +TRD + + +G VK+ DTAG+ Sbjct: 304 RIALVGRTNSGKSSLINRLVGFERSRAVDEKNSTRDPVELPCIYKGRKVKLIDTAGL 360 >gi|325916357|ref|ZP_08178632.1| cell division checkpoint GTPase YihA [Xanthomonas vesicatoria ATCC 35937] gi|325537405|gb|EGD09126.1| cell division checkpoint GTPase YihA [Xanthomonas vesicatoria ATCC 35937] Length = 207 Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 1/55 (1%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKD-VAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 GY++ G SNAGKSS NAL +++ +A V+ PG T+ ++ + E YLV + Sbjct: 24 GGYEVAFAGRSNAGKSSALNALTRQNSLARVSKTPGRTQQLVFFQIQPERYLVDL 78 >gi|208434603|ref|YP_002266269.1| iron (II) transport protein [Helicobacter pylori G27] gi|208432532|gb|ACI27403.1| iron (II) transport protein [Helicobacter pylori G27] Length = 644 Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust. Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKSSL NAL+ + V + G T D + + L + + + I D G + Sbjct: 8 IALVGQPNVGKSSLINALSNAHLK-VGNFAGVTVDKMEVGLIHKEHQITIIDLPGTYALN 66 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 D +E + + FLE DLIL Sbjct: 67 DFTTEEKVTKDFLEKGQYDLIL 88 >gi|188493826|ref|ZP_03001096.1| putative GTPase [Escherichia coli 53638] gi|188489025|gb|EDU64128.1| putative GTPase [Escherichia coli 53638] Length = 249 Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 36/58 (62%) Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282 +G S AGKSSL NAL + +V V+D+ TR+V L+ G+ + I+D G+ E+ D Sbjct: 1 MGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQRFRLNGHGHSMVITDLPGVGESRD 58 >gi|218558875|ref|YP_002391788.1| hypothetical protein ECS88_2091 [Escherichia coli S88] gi|218365644|emb|CAR03380.1| conserved hypothetical protein; putative GTP-binding domain [Escherichia coli S88] Length = 303 Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282 I+G S AGKSSL NAL + +V V+D+ R+V L+ G+ + I+D G+ E+ D Sbjct: 54 IMGKSGAGKSSLCNALFQGEVTPVSDVHAGPREVQRFRLNGHGHSMVITDLPGVGESRD 112 >gi|317009300|gb|ADU79880.1| ferrous iron transport protein B [Helicobacter pylori India7] Length = 642 Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust. Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKSSL NAL+ + V + G T D + + L + + + I D G + Sbjct: 6 IALVGQPNVGKSSLINALSNAHLK-VGNFAGVTVDKMEVGLIHKEHQITIIDLPGTYALN 64 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 D +E + + FLE DLIL Sbjct: 65 DFTTEEKVTKDFLEKGQYDLIL 86 >gi|315453275|ref|YP_004073545.1| ferrous iron transport protein [Helicobacter felis ATCC 49179] gi|315132327|emb|CBY82955.1| ferrous iron transport protein [Helicobacter felis ATCC 49179] Length = 633 Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKSSL NA++ + V + G T + + + I D GI + Sbjct: 6 VALVGQPNVGKSSLINAISGAHLK-VGNFAGVTVEKTQVSTTYNNTKITIVDLPGIYALN 64 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 D +E + R FLE E+ DLIL Sbjct: 65 DFTIEEKVSRQFLENEHFDLIL 86 >gi|310828944|ref|YP_003961301.1| hypothetical protein ELI_3378 [Eubacterium limosum KIST612] gi|308740678|gb|ADO38338.1| hypothetical protein ELI_3378 [Eubacterium limosum KIST612] Length = 397 Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 66/123 (53%), Gaps = 8/123 (6%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276 N I I G N+GKSSL NAL + +A+V+D+ GTT D + +++ G DTAG Sbjct: 10 NRLHIGIYGKRNSGKSSLINALTGQKIALVSDVAGTTADPVYKYMEIHGIGPCMFIDTAG 69 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL-KEINSKKEISF-----PKNIDFIFIGTKSD 330 + ++ E + +T ++ D+ L++ + ++++E ++ +N I I KSD Sbjct: 70 FDDIGELGEMR-VGQTRKAMDKTDIALIVWGDTHTEEEYNWIDAFKKRNTPVIPIINKSD 128 Query: 331 LYS 333 + + Sbjct: 129 ILT 131 >gi|300867293|ref|ZP_07111952.1| ferrous iron transport protein B [Oscillatoria sp. PCC 6506] gi|300334698|emb|CBN57118.1| ferrous iron transport protein B [Oscillatoria sp. PCC 6506] Length = 597 Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 1/85 (1%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I ++G N GKS+ FN + + A + + PG T D++ + L ++ D GI + Sbjct: 3 QIAVVGMPNTGKSTFFNRITGAN-ARIGNWPGITVDLMVAKVQLGNEAAEMVDLPGIYDL 61 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 E E + R FLE L+L++ Sbjct: 62 HGFSEDEQVVRNFLENNPIHLVLMI 86 >gi|308182825|ref|YP_003926952.1| iron(II) transport protein (feoB) [Helicobacter pylori PeCan4] gi|308065010|gb|ADO06902.1| iron(II) transport protein (feoB) [Helicobacter pylori PeCan4] Length = 642 Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust. Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKSSL NAL+ + V + G T D + + L + + + I D G + Sbjct: 6 IALVGQPNVGKSSLINALSNAHLK-VGNFAGVTVDKMEVGLIHKEHQITIIDLPGTYALN 64 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 D +E + + FLE DLIL Sbjct: 65 DFTTEEKVTKDFLEKGQYDLIL 86 >gi|298736383|ref|YP_003728909.1| ferrous iron transport protein B [Helicobacter pylori B8] gi|298355573|emb|CBI66445.1| ferrous iron transport protein B [Helicobacter pylori B8] Length = 642 Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust. Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKSSL NAL+ + V + G T D + + L + + + I D G + Sbjct: 6 IALVGQPNVGKSSLINALSNAHLK-VGNFAGVTVDKMEVGLIHKEHQITIIDLPGTYALN 64 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 D +E + + FLE DLIL Sbjct: 65 DFTTEEKVTKDFLEKGQYDLIL 86 >gi|307329031|ref|ZP_07608199.1| ribosome small subunit-dependent GTPase A [Streptomyces violaceusniger Tu 4113] gi|306885393|gb|EFN16411.1| ribosome small subunit-dependent GTPase A [Streptomyces violaceusniger Tu 4113] Length = 369 Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust. Identities = 40/106 (37%), Positives = 55/106 (51%), Gaps = 17/106 (16%) Query: 203 ISSHISQG--KLGEIIRNGYKIVILGHSNAGKSSLFNAL---AKKDVAIVTDIPG----- 252 +SS +G +LG ++ G V+LG S AGKS+L NAL A +DV + D G Sbjct: 185 VSSATGEGLEELGALLAPGTS-VLLGQSGAGKSTLANALVGAAVQDVHAIRDSDGKGRHT 243 Query: 253 -TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 TTRD+L L G L+ DT G+R + G+ R F E+E Sbjct: 244 TTTRDLLP--LPSGGVLI---DTPGLRGVGMWDAEGGVARAFAEIE 284 >gi|255533658|ref|YP_003094030.1| GTP-binding protein Era [Pedobacter heparinus DSM 2366] gi|255346642|gb|ACU05968.1| GTP-binding protein Era [Pedobacter heparinus DSM 2366] Length = 295 Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust. Identities = 29/92 (31%), Positives = 50/92 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+L NAL + ++I+T TTR + ++ E Y + SDT GI + Sbjct: 8 VSIIGKPNVGKSTLMNALVGEKLSIITPKAQTTRHRILGIVNEESYQIVFSDTPGIIKPL 67 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE 313 ++ + + +ADLIL + +IN + + Sbjct: 68 YGLQDSMMNSVKGALTDADLILFVTDINEQHD 99 >gi|71662850|ref|XP_818425.1| small GTP-binding protein [Trypanosoma cruzi strain CL Brener] gi|70883677|gb|EAN96574.1| small GTP-binding protein, putative [Trypanosoma cruzi] Length = 571 Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 11/94 (11%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVA-----IVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 ++ I+G N+GKSSLFN L++ IV D G TRD + LEG I DT Sbjct: 104 RVAIVGRMNSGKSSLFNLLSEDPTMPNRKNIVRDFDGITRDSVEGHAQLEGMHFTIIDTP 163 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309 G +V + ++ F VE AD + + ++ Sbjct: 164 G------MVNGKLVEEAFRTVETADAAIFVTSVD 191 Score = 39.7 bits (91), Expect = 0.87, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 34/57 (59%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 +I ++G +N+GKSSL N L + + D +TRD + + +G VK+ DTAG+ Sbjct: 304 RIALVGRTNSGKSSLINRLVGFERSRAVDEKNSTRDPVELSCIYKGRKVKLIDTAGL 360 >gi|325681534|ref|ZP_08161059.1| ribosome biogenesis GTPase Era [Ruminococcus albus 8] gi|324106801|gb|EGC01092.1| ribosome biogenesis GTPase Era [Ruminococcus albus 8] Length = 298 Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 45/90 (50%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I G +NAGKSSL NAL + +A V+D P TTR +T L DT G+ + Sbjct: 7 VTIAGRANAGKSSLLNALVGEKIAAVSDKPQTTRTKITGVLTKGETQFVFMDTPGMHKAK 66 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK 311 + + + + + D+I+L+ + K Sbjct: 67 NKLSEHMVNTVNETIAGVDMIILMCDCTKK 96 >gi|256810043|ref|YP_003127412.1| small GTP-binding protein [Methanocaldococcus fervens AG86] gi|256793243|gb|ACV23912.1| small GTP-binding protein [Methanocaldococcus fervens AG86] Length = 185 Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust. Identities = 31/104 (29%), Positives = 56/104 (53%), Gaps = 26/104 (25%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS------- 272 +KI I+G NAGKSS+ NAL K V++V+++ GTT+ + ++ Y K+ Sbjct: 6 FKIAIIGPENAGKSSIMNALFGKYVSLVSEVGGTTK------MPIKKYWGKLKIGRVKEE 59 Query: 273 ---------DTAGIRETDD----IVEKEGIKRTFLEVENADLIL 303 D G+ T D I+ + +++T+ E+++AD+I+ Sbjct: 60 PEFVNLVFVDLGGLYTTTDKQSPIMTPKVLEKTYEEIKDADMII 103 >gi|86749994|ref|YP_486490.1| GTP-binding protein, HSR1-related [Rhodopseudomonas palustris HaA2] gi|86573022|gb|ABD07579.1| GTP-binding protein, HSR1-related [Rhodopseudomonas palustris HaA2] Length = 457 Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust. Identities = 49/186 (26%), Positives = 85/186 (45%), Gaps = 30/186 (16%) Query: 217 RNGYKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDT 274 R Y++V L G++NAGKS+LFN L + DV D+ T D L L G +SDT Sbjct: 221 RVPYRVVALVGYTNAGKSTLFNRLTRADVQ-AADMLFATLDPTLRALTLPHGGKAMLSDT 279 Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF--IGTKSD-- 330 G + T EV ADLIL +++I+ + + +++D + +G ++D Sbjct: 280 VGFISNLPTQLVAAFRATLEEVLEADLILHVRDISHEDAEAQERDVDAVLRQLGVEADGG 339 Query: 331 ----------------------LYSTYTEEYD-HLISSFTGEGLEELINKIKSILSNKFK 367 + + +E+ ++S+ +GEG++EL+ I+ L+ Sbjct: 340 RILEIWNKIDRFEPEQREELRNIAARRSEDRPCFMVSAVSGEGVDELLLAIEQRLAAWRS 399 Query: 368 KLPFSI 373 L +I Sbjct: 400 VLDLTI 405 >gi|15645310|ref|NP_207481.1| iron(II) transport protein (feoB) [Helicobacter pylori 26695] gi|76364190|sp|O25396|FEOB_HELPY RecName: Full=Ferrous iron transport protein B gi|2313813|gb|AAD07741.1| iron(II) transport protein (feoB) [Helicobacter pylori 26695] Length = 642 Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust. Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKSSL NAL+ + V + G T D + + L + + + I D G + Sbjct: 6 IALVGQPNVGKSSLINALSNAHLK-VGNFAGVTVDKMEVGLIHKEHQITIIDLPGTYALN 64 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 D +E + + FLE DLIL Sbjct: 65 DFTTEEKVTKDFLEKGQYDLIL 86 >gi|157363889|ref|YP_001470656.1| small GTP-binding protein [Thermotoga lettingae TMO] gi|157314493|gb|ABV33592.1| small GTP-binding protein [Thermotoga lettingae TMO] Length = 403 Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust. Identities = 53/169 (31%), Positives = 84/169 (49%), Gaps = 22/169 (13%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGIRE 279 + I G N GKSS NA+ ++V+IV+DI GTT D + TI+L+ G + I DT G + Sbjct: 11 VAIAGRRNVGKSSFLNAIIGQNVSIVSDIAGTTTDPVYKTIELNPVGPVTFI-DTPGFDD 69 Query: 280 TDDIVEKEGIKRTFLEVENADL-ILLLKEINSKKE---ISFPK--NIDFIFIGTKSD--- 330 T ++ + I+R + AD ILL+ + ++ E +S + I F+ + K D Sbjct: 70 TGEL-GRLRIERARKVLYRADCGILLVDSLPTRYEDDIVSLFREMEIPFLIVVNKEDLLK 128 Query: 331 -----LYSTYTEEYDHL---ISSFTGEGLEELINKIKSILSNKFKKLPF 371 L Y + Y +SS +G E + KI IL + ++PF Sbjct: 129 EKVDELLGVYQQRYGVKTISVSSKLIKGFELIGRKINEILPDD-DEVPF 176 >gi|317012498|gb|ADU83106.1| iron(II) transport protein [Helicobacter pylori Lithuania75] Length = 642 Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust. Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKSSL NAL+ + V + G T D + + L + + + I D G + Sbjct: 6 IALVGQPNVGKSSLINALSNAHLK-VGNFAGVTVDKMEVGLIHKEHQITIIDLPGTYALN 64 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 D +E + + FLE DLIL Sbjct: 65 DFTTEEKVTKDFLEKGQYDLIL 86 >gi|308184474|ref|YP_003928607.1| iron(II) transport protein (feoB) [Helicobacter pylori SJM180] gi|308060394|gb|ADO02290.1| iron(II) transport protein (feoB) [Helicobacter pylori SJM180] Length = 642 Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust. Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKSSL NAL+ + V + G T D + + L + + + I D G + Sbjct: 6 IALVGQPNVGKSSLINALSNAHLK-VGNFAGVTVDKMEVGLIHKEHQITIIDLPGTYALN 64 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 D +E + + FLE DLIL Sbjct: 65 DFTTEEKVTKDFLEKGQYDLIL 86 >gi|206891087|ref|YP_002248799.1| ferrous iron transport protein B [Thermodesulfovibrio yellowstonii DSM 11347] gi|206743025|gb|ACI22082.1| ferrous iron transport protein B [Thermodesulfovibrio yellowstonii DSM 11347] Length = 732 Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + + G+ N+GKS+L NA+A + I + PG T + T L ++ +V + D G Sbjct: 6 VAVTGNPNSGKSTLINAIAGISLQI-GNWPGVTVEKKTATLKIDELMVNLVDLPGTYSLS 64 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++E I R FL E DLI+ Sbjct: 65 PYTQEEVIARDFLVQEKPDLII 86 >gi|154247805|ref|YP_001418763.1| GTP-binding protein Era [Xanthobacter autotrophicus Py2] gi|154161890|gb|ABS69106.1| GTP-binding protein Era [Xanthobacter autotrophicus Py2] Length = 385 Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust. Identities = 47/162 (29%), Positives = 78/162 (48%), Gaps = 28/162 (17%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-IDLDLEGYLVKISDTA 275 R G+ + +LG NAGKS+L N L V+IV+ TTR ++ I LD LV + DT Sbjct: 90 RCGF-VALLGAPNAGKSTLTNQLVGTKVSIVSHKVQTTRAIVRGIALDGAAQLVLV-DTP 147 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK--------------EISFPK--- 318 GI +E+ + + +AD+I LL +++K+ +I P+ Sbjct: 148 GIFSPKRRLERAMVSSAWTHAADADVIALL--VDAKRGLDEDIEALLAPLSQIHKPRALI 205 Query: 319 --NIDFIFIGTKSDLYSTYTEE--YDH--LISSFTGEGLEEL 354 ID I T L + E+ +D ++S+ TG+G+ ++ Sbjct: 206 LNKIDIIRRDTLLALAAQINEKLAFDRVFMVSALTGDGVADV 247 >gi|317486347|ref|ZP_07945177.1| GTP-binding protein Era [Bilophila wadsworthia 3_1_6] gi|316922417|gb|EFV43673.1| GTP-binding protein Era [Bilophila wadsworthia 3_1_6] Length = 311 Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 1/61 (1%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R G+ + ++G NAGKS+L NAL + VAIVT P TTR+ + L + V DT G Sbjct: 6 RCGW-VALMGPPNAGKSTLTNALVGQKVAIVTAKPQTTRNRIVGILTQKDAQVIFMDTPG 64 Query: 277 I 277 + Sbjct: 65 V 65 >gi|15903636|ref|NP_359186.1| GTP-binding protein YqeH [Streptococcus pneumoniae R6] gi|116516270|ref|YP_817012.1| GTP-binding protein YqeH [Streptococcus pneumoniae D39] gi|15459261|gb|AAL00397.1| Conserved hypothetical protein [Streptococcus pneumoniae R6] gi|116076846|gb|ABJ54566.1| GTP-binding protein [Streptococcus pneumoniae D39] Length = 368 Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust. Identities = 48/174 (27%), Positives = 75/174 (43%), Gaps = 45/174 (25%) Query: 151 SGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQG 210 SG++S QW+ K H D+ + ++ ++ KEV++ I Sbjct: 118 SGKIS----QWLMKRAHEEGLRPVDVVLTSAQN--KYAIKEVIDKI-------------- 157 Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLE 265 E R G + ++G +N GKS+L NA+ + ++V + PGTT D + I LD Sbjct: 158 ---EHYRKGRDVYVVGVTNVGKSTLINAIIQEITGDQNVITTSRFPGTTLDKIEIPLDDG 214 Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319 Y I DT GI + +L +N LK ++ KKEI PK Sbjct: 215 SY---IYDTPGIIHRHQMAH-------YLTAKN------LKYVSPKKEIK-PKT 251 >gi|289177355|gb|ADC84601.1| HflX [Bifidobacterium animalis subsp. lactis BB-12] Length = 523 Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust. Identities = 56/207 (27%), Positives = 93/207 (44%), Gaps = 34/207 (16%) Query: 222 IVILGHSNAGKSSLFNALAKK----DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 I ++G++NAGKSSL N L + A+ + R T D L Y+ DT G Sbjct: 293 IAVVGYTNAGKSSLTNRLTGSTELVENALFATLDTAVRRTQTRDGRLYAYV----DTVGF 348 Query: 278 --RETDDIVEKEGIKRTFLEVENADLILLL---------KEINSKKE----ISFPKNIDF 322 R ++V E K T E+ +ADLI+ + +I++ E I + + Sbjct: 349 VRRLPTNLV--EAFKSTLEEIADADLIVHVVDASHPDPFSQIDAVNEVLQTIDGVERLPV 406 Query: 323 IFIGTKSDLYSTYTEEY-------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375 I + K+DL E H++SS TGEG++ L ++S+L + + +P Sbjct: 407 ITVFNKADLIDDAKRERLHALAPDAHIVSSATGEGVDALRADVESMLVDPDVHVEALLPY 466 Query: 376 HKRHLYHLSQTVRYLEMASLNEKDCGL 402 + L L++ Y + SL +D G+ Sbjct: 467 TEGSL--LAKVREYGRLESLEYRDDGI 491 >gi|154505900|ref|ZP_02042638.1| hypothetical protein RUMGNA_03442 [Ruminococcus gnavus ATCC 29149] gi|153793918|gb|EDN76338.1| hypothetical protein RUMGNA_03442 [Ruminococcus gnavus ATCC 29149] Length = 299 Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust. Identities = 45/184 (24%), Positives = 77/184 (41%), Gaps = 39/184 (21%) Query: 216 IRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272 +R+ +K + ++G N GKS+L N L + +AI ++ P TTR+ + L E + Sbjct: 1 MRDDFKSGFVTLIGRPNVGKSTLMNQLIGQKIAITSNKPQTTRNRIQTVLTTEEGQIVFV 60 Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------------INSKKEISFPKNI 320 DT GI + + + + + + D++L L E I K + P Sbjct: 61 DTPGIHKAKNKLGEYMVNVAERTLNEVDVVLWLVEPSTFIGAGEKHIIEQLKRVKTP--- 117 Query: 321 DFIFIGTKSDLYS---------TYTEEYDHL----ISSFTGEGLEELINKIKSILSNKFK 367 I + K D+ Y +EYD +S+ G+ +EL+N I K Sbjct: 118 -VILVINKIDMVKREEVLLFIDAYRKEYDFAEIVPVSARNGDNTDELVNVI-------LK 169 Query: 368 KLPF 371 LP+ Sbjct: 170 YLPY 173 >gi|118364850|ref|XP_001015646.1| small GTP-binding protein domain containing protein [Tetrahymena thermophila] gi|89297413|gb|EAR95401.1| small GTP-binding protein domain containing protein [Tetrahymena thermophila SB210] Length = 677 Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust. Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 5/90 (5%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280 I ++G++NAGKS+L NAL KKDV D T + L G I DT G Sbjct: 395 IALIGYTNAGKSALMNALIKKDVVESKDNLFQTLSTTSRKFKLISGQQAIILDTIGF--I 452 Query: 281 DDIVEK--EGIKRTFLEVENADLILLLKEI 308 D+ + + + T +EVE+ADL+L +++I Sbjct: 453 TDLPHELVDSFQSTLMEVEHADLVLHVRDI 482 >gi|297172549|gb|ADI23519.1| GTPase [uncultured Gemmatimonadales bacterium HF0770_41L09] Length = 317 Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust. Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 1/98 (1%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273 E+ R GY + ++G NAGKS+L N L + ++IVT TT +T L + + D Sbjct: 15 EVARTGY-VTLVGRPNAGKSTLLNQLVGEHLSIVTPKAQTTWQRVTGILSVGTDQIIFLD 73 Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311 T G+ E D++++ + + AD+ +LL + +K Sbjct: 74 TPGLLEAKDMLQRAMLGAALEALAEADITILLIDSTTK 111 >gi|312973770|ref|ZP_07787942.1| uncharacterized protein yfjP [Escherichia coli 1827-70] gi|310332365|gb|EFP99600.1| uncharacterized protein yfjP [Escherichia coli 1827-70] gi|324017377|gb|EGB86596.1| hypothetical protein HMPREF9542_03971 [Escherichia coli MS 117-3] Length = 290 Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282 I+G S AGKSSL NAL + +V V+D+ R+V L+ G+ + I+D G+ E+ D Sbjct: 41 IMGKSGAGKSSLCNALFQGEVTPVSDVHAGPREVQRFRLNGHGHSMVITDLPGVGESRD 99 >gi|296109074|ref|YP_003616023.1| small GTP-binding protein [Methanocaldococcus infernus ME] gi|295433888|gb|ADG13059.1| small GTP-binding protein [Methanocaldococcus infernus ME] Length = 185 Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust. Identities = 30/103 (29%), Positives = 58/103 (56%), Gaps = 25/103 (24%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI-------- 271 +KI I+G NAGKSS+ NAL K +++V+++ GTT+ + ++ Y KI Sbjct: 3 FKIAIIGPENAGKSSIMNALFGKYISLVSEVGGTTK------MPVKRYWGKIKVSRLKEN 56 Query: 272 --------SDTAGIRETDD---IVEKEGIKRTFLEVENADLIL 303 SD +G+ ++ ++ K+ ++ T+ E+E++D+I+ Sbjct: 57 PIFAEIMFSDLSGLYRGNNKEAVLSKKVLEETYKEIESSDMII 99 >gi|193216878|ref|YP_002000120.1| GTP-binding protein Era [Mycoplasma arthritidis 158L3-1] gi|193002201|gb|ACF07416.1| GTP-binding protein Era [Mycoplasma arthritidis 158L3-1] Length = 294 Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust. Identities = 28/88 (31%), Positives = 47/88 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+L N L ++AIV+ TTRD + + + Y + DT GI + + Sbjct: 8 VALIGRPNTGKSTLMNHLISYELAIVSKHAQTTRDDIKGFYNDDEYQIIFIDTPGIHKGE 67 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN 309 ++ K KR +++ DL+L L N Sbjct: 68 SLLSKRLNKRAQDALKDVDLVLFLSPAN 95 >gi|125973281|ref|YP_001037191.1| GTP-binding protein YlqF [Clostridium thermocellum ATCC 27405] gi|256003761|ref|ZP_05428749.1| GTP-binding protein HSR1-related protein [Clostridium thermocellum DSM 2360] gi|281417484|ref|ZP_06248504.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium thermocellum JW20] gi|125713506|gb|ABN51998.1| Ras superfamily GTP-binding protein YlqF [Clostridium thermocellum ATCC 27405] gi|255992322|gb|EEU02416.1| GTP-binding protein HSR1-related protein [Clostridium thermocellum DSM 2360] gi|281408886|gb|EFB39144.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium thermocellum JW20] gi|316940487|gb|ADU74521.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium thermocellum DSM 1313] Length = 291 Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 9/88 (10%) Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249 K+ + DI+ K+ I +G++ IR +I+G N GKSSL N +A K A+ D Sbjct: 97 KDQMRDIM--KDRIERDRQRGRIFRPIRT----MIVGIPNVGKSSLINKIAGKKSAVTGD 150 Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGI 277 PG TR+ I+++ E +++ DT GI Sbjct: 151 RPGVTRNKQWINVNNE---IQLMDTPGI 175 >gi|307153147|ref|YP_003888531.1| small GTP-binding protein [Cyanothece sp. PCC 7822] gi|306983375|gb|ADN15256.1| small GTP-binding protein [Cyanothece sp. PCC 7822] Length = 208 Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust. Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 1/86 (1%) Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 + N +I ++G N GKS LFNAL A V++ PGTT +V ++ V + DT Sbjct: 36 LTNIPQIALVGMPNVGKSVLFNALTGT-YATVSNYPGTTVEVSRGQTVIDDRQVNVIDTP 94 Query: 276 GIRETDDIVEKEGIKRTFLEVENADL 301 G+ I E+E + R L E +L Sbjct: 95 GMYSLVPITEEERVARDLLLKERVNL 120 >gi|183602407|ref|ZP_02963773.1| GTP-binding protein [Bifidobacterium animalis subsp. lactis HN019] gi|241191239|ref|YP_002968633.1| GTP-binding protein [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196645|ref|YP_002970200.1| GTP-binding protein [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218326|gb|EDT88971.1| GTP-binding protein [Bifidobacterium animalis subsp. lactis HN019] gi|240249631|gb|ACS46571.1| GTP-binding protein [Bifidobacterium animalis subsp. lactis Bl-04] gi|240251199|gb|ACS48138.1| GTP-binding protein [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295794232|gb|ADG33767.1| GTP-binding protein [Bifidobacterium animalis subsp. lactis V9] Length = 515 Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust. Identities = 56/207 (27%), Positives = 93/207 (44%), Gaps = 34/207 (16%) Query: 222 IVILGHSNAGKSSLFNALAKK----DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 I ++G++NAGKSSL N L + A+ + R T D L Y+ DT G Sbjct: 285 IAVVGYTNAGKSSLTNRLTGSTELVENALFATLDTAVRRTQTRDGRLYAYV----DTVGF 340 Query: 278 --RETDDIVEKEGIKRTFLEVENADLILLL---------KEINSKKE----ISFPKNIDF 322 R ++V E K T E+ +ADLI+ + +I++ E I + + Sbjct: 341 VRRLPTNLV--EAFKSTLEEIADADLIVHVVDASHPDPFSQIDAVNEVLQTIDGVERLPV 398 Query: 323 IFIGTKSDLYSTYTEEY-------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375 I + K+DL E H++SS TGEG++ L ++S+L + + +P Sbjct: 399 ITVFNKADLIDDAKRERLHALAPDAHIVSSATGEGVDALRADVESMLVDPDVHVEALLPY 458 Query: 376 HKRHLYHLSQTVRYLEMASLNEKDCGL 402 + L L++ Y + SL +D G+ Sbjct: 459 TEGSL--LAKVREYGRLESLEYRDDGI 483 >gi|110633964|ref|YP_674172.1| GTP-binding protein, HSR1-related [Mesorhizobium sp. BNC1] gi|110284948|gb|ABG63007.1| GTP-binding protein, HSR1-related protein [Chelativorans sp. BNC1] Length = 460 Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust. Identities = 45/184 (24%), Positives = 85/184 (46%), Gaps = 31/184 (16%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280 + I+G++NAGKS+LFN L V + D+ T D + G +V +SDT G Sbjct: 232 VAIVGYTNAGKSTLFNRLTGASV-LAEDMLFATLDPTLRRVRFPHGTVVILSDTVGF--I 288 Query: 281 DDIVEK--EGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF--IGTKSDLYSTYT 336 D+ + T EV AD+IL L++I+ + ++++ + +G + + Sbjct: 289 SDLPPHLVAAFRATLEEVVEADVILHLRDISDPDTAAHARDVEQVLASLGVDTSDPARAV 348 Query: 337 EEYDHL-----------------------ISSFTGEGLEELINKIKSILSNKFKKLPFSI 373 E ++ + IS+ TGEG+E+L+ ++ LS + ++ F++ Sbjct: 349 EVWNKIDRLSEADRERLLRDDINKTAPIAISAITGEGIEDLMALVEERLSGEVSEVLFTL 408 Query: 374 PSHK 377 S + Sbjct: 409 SSEQ 412 >gi|297172559|gb|ADI23529.1| predicted GTPase [uncultured Gemmatimonadales bacterium HF0770_41L09] Length = 79 Score = 44.7 bits (104), Expect = 0.028, Method: Composition-based stats. Identities = 29/68 (42%), Positives = 39/68 (57%), Gaps = 3/68 (4%) Query: 375 SHKRHLYHLSQTVRYLEM--ASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDII 432 + +RHL L Q +L+ A L G +++AE LRLA +L +ITG + LL I Sbjct: 13 ARRRHLQALEQAAEHLQQGKAQLLGAWAG-ELLAEELRLAQQNLSEITGEFTSDDLLGRI 71 Query: 433 FSKFCIGK 440 FS FCIGK Sbjct: 72 FSSFCIGK 79 >gi|108563095|ref|YP_627411.1| iron(II) transport protein [Helicobacter pylori HPAG1] gi|107836868|gb|ABF84737.1| iron(II) transport protein [Helicobacter pylori HPAG1] Length = 644 Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust. Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKSSL NAL+ + V + G T D + + L + + + I D G + Sbjct: 8 IALVGQPNVGKSSLINALSNAHLK-VGNFAGVTVDKMEVGLIHKEHQITIIDLPGTYALN 66 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 D +E + + FLE DLIL Sbjct: 67 DFTTEEKVTKDFLEKGQYDLIL 88 >gi|298253511|ref|ZP_06977301.1| GTPase [Gardnerella vaginalis 5-1] gi|297532278|gb|EFH71166.1| GTPase [Gardnerella vaginalis 5-1] Length = 507 Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust. Identities = 45/173 (26%), Positives = 76/173 (43%), Gaps = 20/173 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G++NAGKSS+ N L + + T + +G + DT G Sbjct: 290 VAVVGYTNAGKSSIINRLTGSQELVENALFATLDTAVRRSQTQDGRSYTLVDTVGFVRRL 349 Query: 282 DIVEKEGIKRTFLEVENADLIL---------LLKEINSKKE----ISFPKNIDFIFIGTK 328 E K T EV AD+IL + +IN+ E IS +I I K Sbjct: 350 PTQLVEAFKSTLEEVGQADVILHVVDGSHPDPISQINAVNEVLANISGVGDIPQIMALNK 409 Query: 329 SDLYSTYTEE-----YDH--LISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374 SD+ S E Y ++S+F+GE L+ L N+++ +L + ++ ++P Sbjct: 410 SDMMSDAARERFSSLYPDAVIVSAFSGENLQILRNRLEELLPSPRVRVDVTLP 462 >gi|282883015|ref|ZP_06291617.1| small GTP-binding protein [Peptoniphilus lacrimalis 315-B] gi|281297153|gb|EFA89647.1| small GTP-binding protein [Peptoniphilus lacrimalis 315-B] Length = 390 Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust. Identities = 34/89 (38%), Positives = 51/89 (57%), Gaps = 2/89 (2%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAG 276 N I I G N+GKSSL N LA ++V+IV+D GTT D + ++ LE V I DT G Sbjct: 7 NRIHIGIFGKVNSGKSSLINLLAAREVSIVSDREGTTTDSVYKSMEFLELGPVTIMDTPG 66 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL 305 + + + K +R ++E AD+ ++L Sbjct: 67 VCDK-SFLGKLREQRLERDIEKADIAIIL 94 >gi|291287434|ref|YP_003504250.1| GTP-binding protein Era [Denitrovibrio acetiphilus DSM 12809] gi|290884594|gb|ADD68294.1| GTP-binding protein Era [Denitrovibrio acetiphilus DSM 12809] Length = 295 Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 1/89 (1%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 + G+ I I+G N GKS+L NAL + +AI + P TTR + L E + + DT G Sbjct: 5 KTGF-ISIMGRPNVGKSTLLNALMGEKIAITSSKPQTTRANIQGILTGEDFQLIFIDTPG 63 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL 305 + D + K +++ +E D I +L Sbjct: 64 YHKAKDSINKMMVQQAKESLEAVDAIYVL 92 >gi|225619274|ref|YP_002720500.1| GTP-binding protein HflX [Brachyspira hyodysenteriae WA1] gi|225214093|gb|ACN82827.1| GTP-binding protein HflX [Brachyspira hyodysenteriae WA1] Length = 370 Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust. Identities = 40/105 (38%), Positives = 55/105 (52%), Gaps = 10/105 (9%) Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT----TRDV-LTIDL 262 S G+ G N ++I I+G++NAGKS+LFN L K+ V + + T TR + LT D Sbjct: 191 STGRKGR--ENTFRIAIVGYTNAGKSTLFNLLCKESVYVEDKLFATLDTHTRKLYLTDDT 248 Query: 263 DLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307 +E V ISDT G + K T EV ADL+L L + Sbjct: 249 PVE---VIISDTVGFIDRLPHTLVASFKSTLSEVVEADLLLHLSD 290 >gi|172040767|ref|YP_001800481.1| bifunctional cytidylate kinase/GTP-binding protein [Corynebacterium urealyticum DSM 7109] gi|171852071|emb|CAQ05047.1| cytidylate kinase [Corynebacterium urealyticum DSM 7109] Length = 784 Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 39/65 (60%) Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274 ++ ++ ++G N GKSSL N ++ + ++V ++ GTT D + ++LE + DT Sbjct: 518 VVSGPRRVALVGRPNVGKSSLLNKISGEQRSVVDNVAGTTVDPVDSIVELEERTWRFVDT 577 Query: 275 AGIRE 279 AGIR+ Sbjct: 578 AGIRK 582 Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 29/55 (52%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 + I+G N GKS+L N + A+V D PG TRD ++ D G + DT G Sbjct: 352 VAIVGRPNVGKSTLVNRFIGRREAVVEDFPGVTRDRISYLGDWGGRRFWVQDTGG 406 >gi|225871191|ref|YP_002747138.1| GTP-binding protein [Streptococcus equi subsp. equi 4047] gi|225700595|emb|CAW95118.1| GTP-binding protein [Streptococcus equi subsp. equi 4047] Length = 372 Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust. Identities = 52/184 (28%), Positives = 78/184 (42%), Gaps = 22/184 (11%) Query: 216 IRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270 +R G + ++G +N GKS+L NA+ + KDV + PGTT D + I LD + Sbjct: 160 LRQGRDVYVVGVTNVGKSTLINAIIQEITGDKDVITTSRFPGTTLDKIEIPLDDGSF--- 216 Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSD 330 I DT GI + +L +N I KEI K P+ F+ + D Sbjct: 217 IFDTPGIIHRHQMAH-------YLSAKNLKFISPKKEIKPKTYQLNPEQTLFLGGLARFD 269 Query: 331 LYS----TYTEEYDH--LISSFTGEGLEELINK-IKSILSNKFKKLPFSIPSHKRHLYHL 383 S +T +D+ L+ EG + +K +L+ KK P RH + L Sbjct: 270 FISGERQGFTAYFDNQLLLHRTKLEGADAFYDKQAGQLLTPPDKKELDDFPRLVRHEFLL 329 Query: 384 SQTV 387 Q V Sbjct: 330 DQKV 333 >gi|118579231|ref|YP_900481.1| ferrous iron transport protein B [Pelobacter propionicus DSM 2379] gi|118501941|gb|ABK98423.1| ferrous iron transport protein B [Pelobacter propionicus DSM 2379] Length = 728 Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust. Identities = 36/153 (23%), Positives = 73/153 (47%), Gaps = 5/153 (3%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R + + G+ N GKS+L NA+A + V + PG T + +L+G +++ D G Sbjct: 14 RRVLTVAVAGNPNVGKSTLINAIAGTRLQ-VGNWPGVTVEKKEALFELDGLKIRLVDLPG 72 Query: 277 IRETDDIVEKEGIKRTFLEVENADLIL-LLKEINSKKEISFPKNIDFIFIGTKSDLYSTY 335 ++E I R FL E DLI+ ++ N ++ + + + +G + Sbjct: 73 TYSLSPYTQEEIIARDFLVHEKPDLIVNVVDATNLERNLYL--TVQLLELGIPLVMALNM 130 Query: 336 TEEYDHLISSFTGEGLEELINKIKSILSNKFKK 368 ++E D G+G+E+++ I+ I ++ ++ Sbjct: 131 SDEADAKGYRIDGDGIEQMMG-IRVIPTSATRR 162 >gi|313897353|ref|ZP_07830896.1| ribosome biogenesis GTPase Era [Clostridium sp. HGF2] gi|312957723|gb|EFR39348.1| ribosome biogenesis GTPase Era [Clostridium sp. HGF2] Length = 299 Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 33/56 (58%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 I I+G NAGKS+L NA+ ++ VAI T P TTR+ ++ L E DT GI Sbjct: 8 ISIIGRPNAGKSTLLNAILQEKVAITTPKPQTTRNNISGILTREDAQFVFVDTPGI 63 >gi|255658526|ref|ZP_05403935.1| GTP-binding protein [Mitsuokella multacida DSM 20544] gi|260849328|gb|EEX69335.1| GTP-binding protein [Mitsuokella multacida DSM 20544] Length = 409 Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 2/85 (2%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280 I + G N+GKSSL NAL + VA V+ +PGTT D + +++ G V DTAG ++ Sbjct: 16 IGLFGRRNSGKSSLVNALTGQHVATVSSVPGTTTDPVYKAMEIHGIGPVVFIDTAGFDDS 75 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 + ++RT + D+ L+L Sbjct: 76 GSLGALR-VERTRDAAKETDIALVL 99 >gi|255656142|ref|ZP_05401551.1| putative ATP/GTP-binding protein [Clostridium difficile QCD-23m63] gi|296450425|ref|ZP_06892181.1| GTP-binding protein [Clostridium difficile NAP08] gi|296879452|ref|ZP_06903446.1| GTP-binding protein [Clostridium difficile NAP07] gi|296260686|gb|EFH07525.1| GTP-binding protein [Clostridium difficile NAP08] gi|296429598|gb|EFH15451.1| GTP-binding protein [Clostridium difficile NAP07] Length = 402 Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust. Identities = 50/161 (31%), Positives = 78/161 (48%), Gaps = 22/161 (13%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDTAGIRE 279 I + G NAGKSS+ NA+ + AIV+DI GTT D + +++ G V I DTAG+ + Sbjct: 14 IGLFGKRNAGKSSIINAITNQSAAIVSDIAGTTTDPVFRPMEILPIGPCVLI-DTAGLDD 72 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISF-----PKNIDFIFIGTKSDL 331 + E I ++ +E D+ LL+ + S++++S KNI I I K D Sbjct: 73 VGKLGELR-ISKSLDVLEKTDIALLVVDCQIGISQEDLSLIEKFNDKNIPHILILNKIDT 131 Query: 332 YSTYTEEYDHL----------ISSFTGEGLEELINKIKSIL 362 +E + +SS G+E L N+I +L Sbjct: 132 IKNQSEILNLAKNKVKCPVVSVSSTDKIGIENLKNEIIRVL 172 >gi|225867895|ref|YP_002743843.1| GTP-binding protein [Streptococcus equi subsp. zooepidemicus] gi|225701171|emb|CAW98072.1| GTP-binding protein [Streptococcus equi subsp. zooepidemicus] Length = 372 Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust. Identities = 52/184 (28%), Positives = 78/184 (42%), Gaps = 22/184 (11%) Query: 216 IRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270 +R G + ++G +N GKS+L NA+ + KDV + PGTT D + I LD + Sbjct: 160 LRQGRDVYVVGVTNVGKSTLINAIIQEITGDKDVITTSRFPGTTLDKIEIPLDDGSF--- 216 Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSD 330 I DT GI + +L +N I KEI K P+ F+ + D Sbjct: 217 IFDTPGIIHRHQMAH-------YLSAKNLKFISPKKEIKPKTYQLNPEQTLFLGGLARFD 269 Query: 331 LYS----TYTEEYDH--LISSFTGEGLEELINK-IKSILSNKFKKLPFSIPSHKRHLYHL 383 S +T +D+ L+ EG + +K +L+ KK P RH + L Sbjct: 270 FISGERQGFTAYFDNQLLLHRTKLEGADAFYDKQAGQLLTPPDKKELDDFPRLVRHEFLL 329 Query: 384 SQTV 387 Q V Sbjct: 330 DQKV 333 >gi|317010904|gb|ADU84651.1| iron(II) transport protein (feoB) [Helicobacter pylori SouthAfrica7] Length = 642 Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKSSL NAL+ + V + G T D + + L + + + I D G + Sbjct: 6 VALVGQPNVGKSSLINALSNAHLK-VGNFAGVTVDKMEVSLIHKEHQITIIDLPGTYALN 64 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 D +E + + FLE DLIL Sbjct: 65 DFTTEEKVTKDFLEKGQYDLIL 86 >gi|316934207|ref|YP_004109189.1| GTP-binding proten HflX [Rhodopseudomonas palustris DX-1] gi|315601921|gb|ADU44456.1| GTP-binding proten HflX [Rhodopseudomonas palustris DX-1] Length = 456 Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust. Identities = 50/186 (26%), Positives = 81/186 (43%), Gaps = 30/186 (16%) Query: 217 RNGYKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDT 274 R Y++V L G++NAGKS+LFN L + DV D+ T D + L G +SDT Sbjct: 220 RVPYRVVALVGYTNAGKSTLFNRLTRADVQ-AADMLFATLDPTLRAIQLPHGGKAMLSDT 278 Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF---------- 324 G + T EV ADLIL +++I+ + + ++D + Sbjct: 279 VGFISNLPTQLVAAFRATLEEVLEADLILHVRDISHEDAEAQQSDVDNVLRQLGVDAASG 338 Query: 325 ----IGTKSDLYSTYTEE----------YDH---LISSFTGEGLEELINKIKSILSNKFK 367 + K D + + DH L+S+ +GEG++EL+ I+ L+ Sbjct: 339 RILEVWNKIDRFEPEQRDELKNIAARRPEDHPCLLVSAVSGEGVDELLLAIEQRLAATRT 398 Query: 368 KLPFSI 373 L S+ Sbjct: 399 VLDLSV 404 >gi|283769577|ref|ZP_06342473.1| GTP-binding protein Era [Bulleidia extructa W1219] gi|283103845|gb|EFC05231.1| GTP-binding protein Era [Bulleidia extructa W1219] Length = 297 Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 +R+G+ + I G NAGKS+L NAL + VAIV++ TTR + L E + +DT Sbjct: 1 MRSGF-VGIAGRPNAGKSTLINALVGEKVAIVSEKSQTTRSEIRGILSREDGQIIFTDTP 59 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLL 305 GI + D + K + +++ D++ L+ Sbjct: 60 GIHKPLDRLGVRMNKEVYSVIQDVDILYLV 89 >gi|242373901|ref|ZP_04819475.1| GTP-binding protein [Staphylococcus epidermidis M23864:W1] gi|242348455|gb|EES40057.1| GTP-binding protein [Staphylococcus epidermidis M23864:W1] Length = 366 Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust. Identities = 43/152 (28%), Positives = 66/152 (43%), Gaps = 21/152 (13%) Query: 217 RNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 RN + I+G +N GKS+L N L +KDV + PGTT D++ I LD ++ Sbjct: 158 RNNEDVYIVGTTNVGKSTLINKLIEISVGEKDVVTTSRFPGTTLDMIDIPLDETTFMY-- 215 Query: 272 SDTAGI------------RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319 DT GI +E I+ K+ IK+ ++ N L + +S K Sbjct: 216 -DTPGIIQEHQMTHYVSEKELKTIMPKKEIKQRVYQL-NEGQTLFFGGLARIDYVSGGKR 273 Query: 320 IDFIFIGTKSDLYSTYTEEYDHLISSFTGEGL 351 F +++ T TE+ + L S G L Sbjct: 274 PLICFFSNDLNIHRTKTEKANELWKSQLGSVL 305 >gi|283853446|ref|ZP_06370690.1| GTP-binding protein Era [Desulfovibrio sp. FW1012B] gi|283571166|gb|EFC19182.1| GTP-binding protein Era [Desulfovibrio sp. FW1012B] Length = 294 Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 45/82 (54%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 +LG +NAGKS+L N + + V+IV+ P TTR+ ++ L EG DT G+ Sbjct: 1 MLGPTNAGKSTLLNRVIGQKVSIVSPKPQTTRNSISGILTEEGAQAVFLDTPGLHRQKRG 60 Query: 284 VEKEGIKRTFLEVENADLILLL 305 + ++ + + AD++L+L Sbjct: 61 IAPLLLRSAYAALTRADVVLVL 82 >gi|210134893|ref|YP_002301332.1| iron(II) transport protein [Helicobacter pylori P12] gi|210132861|gb|ACJ07852.1| iron(II) transport protein [Helicobacter pylori P12] Length = 642 Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust. Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKSSL NAL+ + V + G T D + + L + + + I D G + Sbjct: 6 IALVGQPNVGKSSLINALSNAHLK-VGNFAGVTVDKMEVGLIHKEHQITIIDLPGTYALN 64 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 D +E + + FLE DLIL Sbjct: 65 DFTTEEKVTKDFLEKGQHDLIL 86 >gi|194246696|ref|YP_002004335.1| GTP-binding protein Era [Candidatus Phytoplasma mali] gi|193807053|emb|CAP18489.1| Glycyl-tRNA synthetase [Candidatus Phytoplasma mali] Length = 293 Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 2/85 (2%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT-RDVLTIDLDLEGYLVKISDTAGIRET 280 I ILG N GKS+L N L K+ ++IV+D P T ++ + D++ LV I DT G Sbjct: 8 ITILGRPNVGKSTLINVLVKQKISIVSDKPNVTINKIIGVCNDIDSQLVFI-DTPGFNNR 66 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 ++ K + + + D+IL L Sbjct: 67 KFLLSKRMDESSLKSIYGVDVILFL 91 >gi|94497605|ref|ZP_01304174.1| GTP-binding protein Era [Sphingomonas sp. SKA58] gi|94423022|gb|EAT08054.1| GTP-binding protein Era [Sphingomonas sp. SKA58] Length = 302 Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust. Identities = 44/176 (25%), Positives = 80/176 (45%), Gaps = 29/176 (16%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRET 280 + I+G NAGKS+L NAL + VAI + TTR V+ + ++ + +V + DT GI Sbjct: 13 VAIVGAPNAGKSTLVNALVGQKVAITSPKAQTTRTRVMGVAIEGDAQIV-LVDTPGIFAP 71 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE-----------------INSKKEISFPKNIDF- 322 +++ ++ + + ADLI L+ + S+++ +D Sbjct: 72 KRRLDRAMVQAAWGGAQGADLIALVVDGKAGLGPKMEPIVEALVHRSERKWLVLNKVDIA 131 Query: 323 ----IFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374 + + T+ LY E IS+ TG+GL +L K+ ++ + P+ P Sbjct: 132 IKEKLLVHTQK-LYERVGFEETFFISAQTGDGLAQL----KTAFADAMPQGPWHFP 182 >gi|110798867|ref|YP_696695.1| GTP-binding protein Era [Clostridium perfringens ATCC 13124] gi|123148605|sp|Q0TNU5|ERA_CLOP1 RecName: Full=GTPase Era gi|110673514|gb|ABG82501.1| GTP-binding protein Era [Clostridium perfringens ATCC 13124] Length = 296 Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 1/91 (1%) Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274 + ++G+ I I+G N GKS+L N L + ++IV++ P TTR+ + L E Y + DT Sbjct: 1 MFKSGF-ITIVGRPNVGKSTLTNLLMGEKLSIVSNKPQTTRNNIQTILTGEDYQMIFVDT 59 Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLL 305 GI + + + + +++ DL+L L Sbjct: 60 PGIHKPKHKLGEYMVNSATDSIKDVDLVLFL 90 >gi|56416911|ref|YP_153985.1| GTP-binding protein EngA [Anaplasma marginale str. St. Maries] gi|222475278|ref|YP_002563694.1| GTP-binding protein (engA) [Anaplasma marginale str. Florida] gi|254995098|ref|ZP_05277288.1| GTP-binding protein EngA [Anaplasma marginale str. Mississippi] gi|255003264|ref|ZP_05278228.1| GTP-binding protein EngA [Anaplasma marginale str. Puerto Rico] gi|255004391|ref|ZP_05279192.1| GTP-binding protein EngA [Anaplasma marginale str. Virginia] gi|56388143|gb|AAV86730.1| GTP-binding protein [Anaplasma marginale str. St. Maries] gi|222419415|gb|ACM49438.1| GTP-binding protein (engA) [Anaplasma marginale str. Florida] Length = 438 Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust. Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 3/87 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS+ N++ + I GTTRD ++ + +G + ++DTAGIR+ Sbjct: 176 ISIIGQPNVGKSTFMNSILGEKRVITDGTAGTTRDSISAEYCYKGVRLLLTDTAGIRKRA 235 Query: 282 DI---VEKEGIKRTFLEVENADLILLL 305 + +EK IK + + +++L+ Sbjct: 236 KVTENMEKLSIKSATDAISRSSVVVLM 262 Score = 37.4 bits (85), Expect = 5.2, Method: Compositional matrix adjust. Identities = 16/36 (44%), Positives = 24/36 (66%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 K+ I+G N GKS++FN L + AIV+++ TRD Sbjct: 3 KVAIVGLPNVGKSTIFNRLVRSKSAIVSNVAHVTRD 38 >gi|238018239|ref|ZP_04598665.1| hypothetical protein VEIDISOL_00063 [Veillonella dispar ATCC 17748] gi|237864710|gb|EEP66000.1| hypothetical protein VEIDISOL_00063 [Veillonella dispar ATCC 17748] Length = 417 Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 1/67 (1%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAG 276 N I G NAGKS+L N L + V++V+++ GTT D ++ ++ L V I+DTAG Sbjct: 8 NRVHIGFFGRCNAGKSTLINMLTDQPVSLVSEVAGTTTDPVSKSMEILPLGPVVITDTAG 67 Query: 277 IRETDDI 283 I +T ++ Sbjct: 68 IDDTTEL 74 >gi|209558820|ref|YP_002285292.1| GTP-binding protein YqeH [Streptococcus pyogenes NZ131] gi|209540021|gb|ACI60597.1| GTP-binding protein [Streptococcus pyogenes NZ131] Length = 373 Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust. Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 9/73 (12%) Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDL 264 G++ E+ RNG + ++G +N GKS+L NA+ KDV + PGTT D + I LD Sbjct: 156 GRINEL-RNGRDVYVVGVTNVGKSTLINAIIQEITGNKDVITTSRFPGTTLDKIEIPLDD 214 Query: 265 EGYLVKISDTAGI 277 + I DT GI Sbjct: 215 GTF---IFDTPGI 224 >gi|163846033|ref|YP_001634077.1| GTP-binding proten HflX [Chloroflexus aurantiacus J-10-fl] gi|222523761|ref|YP_002568231.1| GTP-binding proten HflX [Chloroflexus sp. Y-400-fl] gi|163667322|gb|ABY33688.1| GTP-binding proten HflX [Chloroflexus aurantiacus J-10-fl] gi|222447640|gb|ACM51906.1| GTP-binding proten HflX [Chloroflexus sp. Y-400-fl] Length = 445 Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust. Identities = 50/192 (26%), Positives = 84/192 (43%), Gaps = 35/192 (18%) Query: 222 IVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKI-SDTAG 276 I ++G++NAGKS+L NA+ DV + + TTR VL L G +V + +DT G Sbjct: 220 IALVGYTNAGKSTLLNAMTGADVLAEDKLFATLDPTTRQVL-----LPGNIVALMTDTVG 274 Query: 277 IRETDDIVEKEGIKRTFLEVENADLIL-------------------LLKE--INSKKEIS 315 + + T E+E ADL+L L+E ++ K ++ Sbjct: 275 FIQKLPPQLVAAFRATLEEIEEADLLLHVVDVTHRNAQEHAQTVEQTLRELGVDHKPVLT 334 Query: 316 FPKNIDFIFIGTKSDLYSTYTE---EYDHL-ISSFTGEGLEELINKIKSILSNKFKKLPF 371 ID + T D+ E D + +S+ G GL+ L +I ++L+ + ++ Sbjct: 335 VLNKIDLLEGATAEDVGQIAAEMGLPTDIVAVSAQRGWGLQTLGERIVAMLAQRMVRVDA 394 Query: 372 SIPSHKRHLYHL 383 IP + L L Sbjct: 395 YIPYQRNDLVAL 406 >gi|310796457|gb|EFQ31918.1| NGP1NT domain-containing protein [Glomerella graminicola M1.001] Length = 615 Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust. Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 11/113 (9%) Query: 197 LFLKNDISSHISQGKLGEIIRNGYK---------IVILGHSNAGKSSLFNALAKKDVAIV 247 L + + +++ +G L E++R K + ++G+ N GKSS+ N L KK VA V Sbjct: 292 LAMHSSLTNPFGKGSLIELLRQYAKLHSDRKQISVGLIGYPNVGKSSIVNTLRKKKVATV 351 Query: 248 TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 IPG T+ I L + Y++ +TD ++ + R + VEN D Sbjct: 352 APIPGETKVWQYITLTRKIYMIDCPGIVPPSQTD--TPQDLLLRGVVRVENVD 402 >gi|289548419|ref|YP_003473407.1| GTP-binding protein Era [Thermocrinis albus DSM 14484] gi|289182036|gb|ADC89280.1| GTP-binding protein Era [Thermocrinis albus DSM 14484] Length = 302 Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 53/92 (57%), Gaps = 4/92 (4%) Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTI-DLDLEGYLVKISD 273 ++ GY + I+G N GKS+L N L V+IV+ PGTTR VL + ++ E +V + D Sbjct: 1 MKVGY-VAIVGKPNVGKSTLLNNLIGTKVSIVSPKPGTTRIRVLGVKNIPNEAQIVFL-D 58 Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 T GI D + + + + +++AD+IL + Sbjct: 59 TPGIYRPRDALGEAMVSQAATSLQDADVILFM 90 >gi|254519548|ref|ZP_05131604.1| GTP-binding protein [Clostridium sp. 7_2_43FAA] gi|226913297|gb|EEH98498.1| GTP-binding protein [Clostridium sp. 7_2_43FAA] Length = 402 Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 75/149 (50%), Gaps = 17/149 (11%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276 N I + G +NAGKSSL N ++V++V++ GTT D + ++L V I DTAG Sbjct: 8 NRKHIAVFGKTNAGKSSLINRFLGQEVSLVSEKEGTTTDPVQKAMELIPVGPVLIIDTAG 67 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEIN-------SKKEISFPK-NIDFIFIGTK 328 + ++ E +KRT ++ D+ + L +IN + + +F K NI ++ + K Sbjct: 68 FGDKSELGEVR-VKRTLDILKRTDVAIYLFDINDIDLEEFKEAKRNFKKYNIPYVVVINK 126 Query: 329 SDLYSTYTEEYDHL-------ISSFTGEG 350 SD + E + +SS TGEG Sbjct: 127 SDSVNENILEELQIKFKDSIFLSSNTGEG 155 >gi|300814367|ref|ZP_07094638.1| hydrogenase maturation GTPase HydF [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511475|gb|EFK38704.1| hydrogenase maturation GTPase HydF [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 390 Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 2/89 (2%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276 N I I G N+GKSSL N LA ++V+IV+D GTT D + ++ G V I DT G Sbjct: 7 NRIHIGIFGKVNSGKSSLINLLAAREVSIVSDREGTTTDSVYKSMEFLGLGPVTIMDTPG 66 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL 305 + + + K +R ++E AD+ ++L Sbjct: 67 VCDK-SFLGKLREQRLERDIEKADIAIIL 94 >gi|225569437|ref|ZP_03778462.1| hypothetical protein CLOHYLEM_05522 [Clostridium hylemonae DSM 15053] gi|225161645|gb|EEG74264.1| hypothetical protein CLOHYLEM_05522 [Clostridium hylemonae DSM 15053] Length = 404 Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust. Identities = 29/58 (50%), Positives = 38/58 (65%), Gaps = 3/58 (5%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTAGI 277 I I G NAGKSS+ NAL +D+AIV+DI GTT D + ++L G +V I DT G+ Sbjct: 14 IGIFGKRNAGKSSVINALTGQDLAIVSDIKGTTTDPVLKAMELLPLGPVVMI-DTPGL 70 >gi|15674473|ref|NP_268647.1| GTP-binding protein YqeH [Streptococcus pyogenes M1 GAS] gi|21909760|ref|NP_664028.1| GTP-binding protein YqeH [Streptococcus pyogenes MGAS315] gi|28896548|ref|NP_802898.1| GTP-binding protein YqeH [Streptococcus pyogenes SSI-1] gi|71910075|ref|YP_281625.1| GTP-binding protein YqeH [Streptococcus pyogenes MGAS5005] gi|13621572|gb|AAK33368.1| conserved hypothetical protein [Streptococcus pyogenes M1 GAS] gi|21903945|gb|AAM78831.1| putative GTP-binding protein [Streptococcus pyogenes MGAS315] gi|28811802|dbj|BAC64731.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1] gi|71852857|gb|AAZ50880.1| GTP-binding protein [Streptococcus pyogenes MGAS5005] Length = 372 Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust. Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 9/73 (12%) Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDL 264 G++ E+ RNG + ++G +N GKS+L NA+ KDV + PGTT D + I LD Sbjct: 155 GRINEL-RNGRDVYVVGVTNVGKSTLINAIIQEITGNKDVITTSRFPGTTLDKIEIPLDD 213 Query: 265 EGYLVKISDTAGI 277 + I DT GI Sbjct: 214 GTF---IFDTPGI 223 >gi|269958675|ref|YP_003328462.1| GTP-binding protein EngA [Anaplasma centrale str. Israel] gi|269848504|gb|ACZ49148.1| GTP-binding protein EngA [Anaplasma centrale str. Israel] Length = 438 Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust. Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 3/87 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS+ N++ + I GTTRD ++ + +G + ++DTAGIR+ Sbjct: 176 ISIIGQPNVGKSTFMNSILGEKRVITDGTAGTTRDSISAEYCYKGVRLLLTDTAGIRKRA 235 Query: 282 DI---VEKEGIKRTFLEVENADLILLL 305 + +EK IK + + +++L+ Sbjct: 236 KVTENMEKLSIKSATDAISRSSVVVLM 262 Score = 37.4 bits (85), Expect = 5.1, Method: Compositional matrix adjust. Identities = 16/36 (44%), Positives = 24/36 (66%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 K+ I+G N GKS++FN L + AIV+++ TRD Sbjct: 3 KVAIVGLPNVGKSTIFNRLVRSKSAIVSNVAHVTRD 38 >gi|149184562|ref|ZP_01862880.1| GTPase [Erythrobacter sp. SD-21] gi|148831882|gb|EDL50315.1| GTPase [Erythrobacter sp. SD-21] Length = 407 Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust. Identities = 52/184 (28%), Positives = 85/184 (46%), Gaps = 31/184 (16%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI-SDTAGIRET 280 + ++G++NAGKS+LFN L +V + D+ T D + L G I SDT G Sbjct: 178 VALVGYTNAGKSTLFNRLTGAEV-MAEDLLFATLDPTMRAISLPGVEKAILSDTVGFISD 236 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI-NSKKE------ISFPKNIDFIF--IGTKS-- 329 + T EV AD+I +++I NS E + K +D I GT S Sbjct: 237 LPTQLVAAFRATLEEVTAADVICHVRDISNSSAEAQKTQVLRVLKGLDVIDGDDGTSSIP 296 Query: 330 --DLYSTYT----EEYDHL------------ISSFTGEGLEELINKIKSILSNKFKKLPF 371 ++++ + E+ D L IS+ TGEG++EL+ ++ +L+ K F Sbjct: 297 ILEVWNKWDLLDDEKADELGQLADNSDDIIRISAVTGEGVQELLVQLGEMLTAKASVREF 356 Query: 372 SIPS 375 +P+ Sbjct: 357 EVPA 360 >gi|121534215|ref|ZP_01666040.1| GTP-binding protein Era [Thermosinus carboxydivorans Nor1] gi|121307318|gb|EAX48235.1| GTP-binding protein Era [Thermosinus carboxydivorans Nor1] Length = 298 Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust. Identities = 29/102 (28%), Positives = 56/102 (54%), Gaps = 2/102 (1%) Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270 K GE ++G+ + ++G N GKS+L N+L + +AI++D P TTR+ + L L+ + Sbjct: 3 KAGEY-KSGF-VAVIGRPNVGKSTLVNSLVGQKIAIMSDKPQTTRNRILCVLTLDDAQIL 60 Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK 312 DT GI + + + ++ + D+IL + + ++K Sbjct: 61 FIDTPGIHKPKHRLGEYMVQAAETTLREVDVILFVVDATAEK 102 >gi|303242030|ref|ZP_07328522.1| small GTP-binding protein [Acetivibrio cellulolyticus CD2] gi|302590448|gb|EFL60204.1| small GTP-binding protein [Acetivibrio cellulolyticus CD2] Length = 406 Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust. Identities = 57/173 (32%), Positives = 80/173 (46%), Gaps = 41/173 (23%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-------------VLTID--- 261 N I + G N GKSSL NAL + VA+V++I GTT D V+ ID Sbjct: 8 NRLHIALFGRRNVGKSSLINALTHQKVAVVSEIAGTTTDPVYKSMEVLPLGPVVFIDTPG 67 Query: 262 LDLEGYL--VKISDTAGI-RETD-DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP 317 +D EG L +++ T + R+TD I+ G+K+ D L+E SKK I Sbjct: 68 IDDEGMLGNLRVEKTKEVLRKTDIGIIVTTGMKQW------GD----LEEELSKKFIE-- 115 Query: 318 KNIDFIFIGTKSD------LYSTYTEEYDHL---ISSFTGEGLEELINKIKSI 361 + I FI K D L ST E IS++TG G+E L ++ + Sbjct: 116 RKIPFIVAVNKCDNLNDFELISTLKERVKVPVIKISAYTGNGVEALFKELTGL 168 >gi|297243698|ref|ZP_06927629.1| GTPase [Gardnerella vaginalis AMD] gi|296888449|gb|EFH27190.1| GTPase [Gardnerella vaginalis AMD] Length = 507 Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust. Identities = 44/173 (25%), Positives = 77/173 (44%), Gaps = 20/173 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G++NAGKSS+ N L + + T + +G + DT G Sbjct: 290 VAVVGYTNAGKSSIINRLTGSQELVENALFATLDTAVRRSQTQDGRSYTLVDTVGFVRRL 349 Query: 282 DIVEKEGIKRTFLEVENADLIL---------LLKEINSKKE----ISFPKNIDFIFIGTK 328 E K T EV AD+IL + +IN+ E IS +++ I K Sbjct: 350 PTQLVEAFKSTLEEVGQADVILHVVDGSHPDPISQINAVNEVLANISGVEDMPQIMALNK 409 Query: 329 SDLYSTYTEE-----YDH--LISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374 SD+ S E Y ++S+F+GE L+ L N+++ +L + ++ ++P Sbjct: 410 SDMMSDAARERFSSLYPDAVIVSAFSGENLQILRNRLEELLPSPRVRVDVTLP 462 >gi|322373553|ref|ZP_08048089.1| ribosome biogenesis GTPase YqeH [Streptococcus sp. C150] gi|321278595|gb|EFX55664.1| ribosome biogenesis GTPase YqeH [Streptococcus sp. C150] Length = 372 Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 38/69 (55%), Gaps = 8/69 (11%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268 E +R G + ++G +N GKS+L NA+ K KDV + PGTT D + I LD Y Sbjct: 158 EKLRKGRDVYVVGVTNVGKSTLINAIIKEITGDKDVITTSRFPGTTLDKIEIPLDDGTY- 216 Query: 269 VKISDTAGI 277 I DT GI Sbjct: 217 --IFDTPGI 223 >gi|317501762|ref|ZP_07959948.1| small GTP-binding protein [Lachnospiraceae bacterium 8_1_57FAA] gi|331088717|ref|ZP_08337627.1| hypothetical protein HMPREF1025_01210 [Lachnospiraceae bacterium 3_1_46FAA] gi|316896795|gb|EFV18880.1| small GTP-binding protein [Lachnospiraceae bacterium 8_1_57FAA] gi|330407240|gb|EGG86743.1| hypothetical protein HMPREF1025_01210 [Lachnospiraceae bacterium 3_1_46FAA] Length = 410 Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust. Identities = 29/82 (35%), Positives = 50/82 (60%), Gaps = 4/82 (4%) Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDTAGIRETDDI 283 G NAGKSS+ NA+ +D+A+V+D+ GTT D + ++L G +V I DT GI + ++ Sbjct: 18 GRRNAGKSSVMNAVTGQDLAVVSDVKGTTTDPVYKSMELLPIGPVVMI-DTPGIDDEGEL 76 Query: 284 VEKEGIKRTFLEVENADLILLL 305 K +K+++ + D +L+ Sbjct: 77 -GKLRVKKSYQTLNKTDAAVLV 97 >gi|281490709|ref|YP_003352689.1| GTP-binding protein [Lactococcus lactis subsp. lactis KF147] gi|281374478|gb|ADA63999.1| GTP-binding protein [Lactococcus lactis subsp. lactis KF147] Length = 401 Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust. Identities = 35/103 (33%), Positives = 49/103 (47%), Gaps = 15/103 (14%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268 E R G + ++G +N GKS+L NA+ K +DV + PGTT D + I LD + L Sbjct: 195 EYYRRGRDVYVVGVTNVGKSTLINAIIKSASGSEDVITTSRFPGTTLDKIEIPLDEDSAL 254 Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311 + DT GI G +LE E+ + KEI K Sbjct: 255 I---DTPGIIH-------RGQMAHYLEPEDLKYVSPRKEIKPK 287 >gi|238750421|ref|ZP_04611922.1| hypothetical protein yrohd0001_21320 [Yersinia rohdei ATCC 43380] gi|238711352|gb|EEQ03569.1| hypothetical protein yrohd0001_21320 [Yersinia rohdei ATCC 43380] Length = 259 Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust. Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 3/85 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G + AGKSSL NAL + +V V+D+ TRDVL + L + + + D G+ E++ Sbjct: 7 IGIMGKTGAGKSSLCNALFQGEVTPVSDVNACTRDVLRLRLSSGDHSLILVDLPGVGESE 66 Query: 282 DIVEK-EGIKRTFLEVENADLILLL 305 E+ E + R L + DLIL + Sbjct: 67 QRDEEYEYLYRKVL--PDLDLILWV 89 >gi|219683278|ref|YP_002469661.1| GTP-binding proten HflX [Bifidobacterium animalis subsp. lactis AD011] gi|219620928|gb|ACL29085.1| GTP-binding proten HflX [Bifidobacterium animalis subsp. lactis AD011] Length = 506 Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust. Identities = 56/207 (27%), Positives = 93/207 (44%), Gaps = 34/207 (16%) Query: 222 IVILGHSNAGKSSLFNALAKK----DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 I ++G++NAGKSSL N L + A+ + R T D L Y+ DT G Sbjct: 276 IAVVGYTNAGKSSLTNRLTGSTELVENALFATLDTAVRRTQTRDGRLYAYV----DTVGF 331 Query: 278 --RETDDIVEKEGIKRTFLEVENADLILLL---------KEINSKKE----ISFPKNIDF 322 R ++V E K T E+ +ADLI+ + +I++ E I + + Sbjct: 332 VRRLPTNLV--EAFKSTLEEIADADLIVHVVDASHPDPFSQIDAVNEVLQTIDGVERLPV 389 Query: 323 IFIGTKSDLYSTYTEEY-------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375 I + K+DL E H++SS TGEG++ L ++S+L + + +P Sbjct: 390 ITVFNKADLIDDAKRERLHALAPDAHIVSSATGEGVDALRADVESMLVDPDVHVEALLPY 449 Query: 376 HKRHLYHLSQTVRYLEMASLNEKDCGL 402 + L L++ Y + SL +D G+ Sbjct: 450 TEGSL--LAKVREYGRLESLEYRDDGI 474 >gi|34557761|ref|NP_907576.1| putative ferrous iron transport protein B [Wolinella succinogenes DSM 1740] gi|34483478|emb|CAE10476.1| PUTATIVE FERROUS IRON TRANSPORT PROTEIN B [Wolinella succinogenes] Length = 759 Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 42/85 (49%), Gaps = 5/85 (5%) Query: 221 KIVILGHSNAGKSSLFNAL--AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 KI +LG N GKS+LFN L AK+ +A + PG T D + L V++ D GI Sbjct: 8 KIALLGQPNCGKSTLFNTLSGAKQHIA---NYPGVTVDKKSAYFRLGDQEVELIDLPGIY 64 Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303 +E + +L E DLIL Sbjct: 65 SLSTFSPEERVSLAYLREEKPDLIL 89 >gi|291549419|emb|CBL25681.1| iron-only hydrogenase maturation protein HydF [Ruminococcus torques L2-14] Length = 423 Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust. Identities = 31/101 (30%), Positives = 60/101 (59%), Gaps = 8/101 (7%) Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDL 264 ++Q + E + G+ G NAGKSS+ NA+ +D+A+V+D+ GTT D + T++L Sbjct: 13 MNQTPVSERVHIGF----FGKRNAGKSSVMNAVTGQDLAVVSDVKGTTTDPVYKTMELLP 68 Query: 265 EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 G +V + DT GI + ++ E +K+++ + D+ +++ Sbjct: 69 LGPVV-MMDTPGIDDEGELGELR-VKKSYQVLNKTDIAVVV 107 >gi|254439098|ref|ZP_05052592.1| GTP-binding proten HflX [Octadecabacter antarcticus 307] gi|198254544|gb|EDY78858.1| GTP-binding proten HflX [Octadecabacter antarcticus 307] Length = 430 Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust. Identities = 46/178 (25%), Positives = 81/178 (45%), Gaps = 29/178 (16%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280 + ++G++NAGKS+LFN L V V D+ T D +DL G + +SDT G Sbjct: 205 VALVGYTNAGKSTLFNRLTGASV-FVEDMLFATLDPTMRKVDLPNGDAIIMSDTVGFISD 263 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI-------------NSKKEISFPKNIDFIFIGT 327 + T EV AD+IL +++I ++ +++ ++ I + Sbjct: 264 LPTQLVASFRATLEEVLEADVILHVRDISHPQSADQKKAVLDTLRQLDVNPDVPMIEVLN 323 Query: 328 KSDLYSTYTEEYDHL------------ISSFTGEGLEELINKIKSILSNKFKKLPFSI 373 K DL + E+ D+L S+ TG+GL+ L+++I L + L ++ Sbjct: 324 KIDLLA--PEDADYLQALHKDGENVFGTSAVTGQGLDTLLDQITEKLKGTTRALTLTL 379 >gi|116748319|ref|YP_845006.1| GTP-binding protein Era [Syntrophobacter fumaroxidans MPOB] gi|116697383|gb|ABK16571.1| GTP-binding protein Era [Syntrophobacter fumaroxidans MPOB] Length = 307 Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust. Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 1/94 (1%) Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274 + ++GY + ++G N GKS+L N ++ ++I P TTR+ + L G+ + DT Sbjct: 8 VFKSGY-VALIGAPNVGKSTLLNRFLREKISITAPKPQTTRNRILGILTEPGFQIVFMDT 66 Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEI 308 GI D + + + AD + L EI Sbjct: 67 PGIHRAKDRFNRVLVDTALATLGEADAVCFLIEI 100 >gi|221194854|ref|ZP_03567911.1| GTP-binding protein Era [Atopobium rimae ATCC 49626] gi|221185758|gb|EEE18148.1| GTP-binding protein Era [Atopobium rimae ATCC 49626] Length = 307 Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 49/89 (55%), Gaps = 1/89 (1%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 ++G+ + ++G + GKS+L NA K+ +AI + + TTR L ++ + + I DT G Sbjct: 13 KSGF-VALVGRPSVGKSTLLNACLKEKIAITSPVAQTTRRRLRGVVNGPNFQLVIIDTPG 71 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL 305 + + D + KE K E+ +AD + L Sbjct: 72 LHKPKDALGKELNKTALGELNDADCVAFL 100 >gi|70943507|ref|XP_741791.1| translation initiation factor if-2 [Plasmodium chabaudi chabaudi] gi|56520395|emb|CAH75788.1| translation initiation factor if-2, putative [Plasmodium chabaudi chabaudi] Length = 671 Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust. Identities = 56/222 (25%), Positives = 97/222 (43%), Gaps = 57/222 (25%) Query: 217 RNGYKIVI--LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274 RN Y V+ +GH N GK++L + + ++A+ + T+++ I +LE Y DT Sbjct: 187 RNNYYTVVSVIGHINHGKTTLLDKVTNNNLALY-EAGCITQNIKPIHFELEPYKFTFLDT 245 Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLL------KEINSKKEISFPK--NIDFIFIG 326 G + I + + FL +D++++L EI +++ I + NI IF Sbjct: 246 PGHK----IFQILRGRAAFL----SDILIILISLEVGAEIQTEEAIKYADKFNIPVIFAL 297 Query: 327 TKSDLYS-------------------------TYTEEYDH--LISSFTGEGLEELINKIK 359 K+D+Y Y+ E D+ ISS TG L LIN+I Sbjct: 298 NKADIYKENESVVKAELKNQCNRMFDEGTLKHNYSNEIDNAITISSLTGYNLPRLINRIY 357 Query: 360 SILSNKFKKLPFSIPSHKRHLYHLSQ-----TVRYLEMASLN 396 I N ++P H ++++ +Q V+ ++AS N Sbjct: 358 FIKQN------INLPYHSANVFYNNQNGIKKNVQLKDVASAN 393 >gi|217970099|ref|YP_002355333.1| GTP-binding protein HSR1-related [Thauera sp. MZ1T] gi|217507426|gb|ACK54437.1| GTP-binding protein HSR1-related [Thauera sp. MZ1T] Length = 324 Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 3/57 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 +++I+G N GKS+L NAL K+ VA V D P T+ T+DL G + ++DT G+ Sbjct: 118 RMMIMGIPNVGKSTLMNALLKRKVAKVGDEPAVTKHQQTLDL---GPGMTLTDTPGM 171 >gi|86606787|ref|YP_475550.1| GTP-binding domain-containing protein [Synechococcus sp. JA-3-3Ab] gi|86555329|gb|ABD00287.1| GTP-binding domain protein [Synechococcus sp. JA-3-3Ab] Length = 507 Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust. Identities = 46/148 (31%), Positives = 68/148 (45%), Gaps = 25/148 (16%) Query: 164 KLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYK-- 221 KLT R ++ADL +DV K L++DIS Q K EI R + Sbjct: 92 KLT--RDQVQADL-----QDVDRLIQK--------LQDDISRRALQAKAREIDRRLAQEE 136 Query: 222 --IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY--LVKISDTAGI 277 +V+ G ++AGK+SL NAL + V GTT+ LEG+ + ++DT G+ Sbjct: 137 LHLVVFGTASAGKTSLINALLGQPVGETAPTLGTTQQGSIHTYQLEGWSGPISLTDTPGL 196 Query: 278 RETDDIVEKEGIKRTFLEVENADLILLL 305 E E R + ADL++L+ Sbjct: 197 LTIGGAGEAEA--RAL--AQKADLLILV 220 >gi|219112517|ref|XP_002178010.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217410895|gb|EEC50824.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 391 Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust. Identities = 37/99 (37%), Positives = 51/99 (51%), Gaps = 16/99 (16%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD----VLTIDLDLEGYLVKIS 272 R + I+G NAGKS L N L + VA V+ TTRD T+D D + Y V Sbjct: 43 RKRLDVAIVGLPNAGKSQLLNVLTQSTVAAVSRKRHTTRDGILGARTVD-DTQLYFV--- 98 Query: 273 DTAG-IRETDDIVEKEGIKRTFL-----EVENADLILLL 305 DT G +R++ +KEG+ R + E+EN D LL+ Sbjct: 99 DTPGFLRQSQ--AKKEGLNRDLVVTASSEMENVDFSLLV 135 >gi|255505458|ref|ZP_05346246.3| GTP-binding protein [Bryantella formatexigens DSM 14469] gi|255267758|gb|EET60963.1| GTP-binding protein [Bryantella formatexigens DSM 14469] Length = 406 Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 77/156 (49%), Gaps = 14/156 (8%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTA 275 N I G NAGKSS+ NA+ +++A+V+++ GTT D + T++L G V I DT Sbjct: 17 NRVHIGFFGRRNAGKSSVVNAVTNQEIAVVSEVRGTTTDPVYKTMELLPVGP-VMIIDTP 75 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEIS---FPKNIDFIFIGT 327 G + + E ++RT + D+ +L+ + + ++E++ K I +I Sbjct: 76 GYDDEGSLGELR-VRRTKQVLNKTDVAVLVVDATAGMTEVERELTGIFAKKEIPYIIAYN 134 Query: 328 KSDLYSTYTEEYDH--LISSFTGEGLEELINKIKSI 361 K+DL E H IS+ + EL KI ++ Sbjct: 135 KADLLERVPEAGAHEIYISAREKSNIYELKEKIAAL 170 >gi|78356993|ref|YP_388442.1| ribosome biogenesis GTP-binding protein YsxC [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|119369190|sp|Q30ZZ9|ENGB_DESDG RecName: Full=Probable GTP-binding protein EngB gi|78219398|gb|ABB38747.1| Small GTP-binding protein domain [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 218 Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 1/53 (1%) Query: 218 NGYKIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269 N +I + G SN GKSSL N LA +K +A + PG TR + +D +GY V Sbjct: 21 NAPQIALAGRSNVGKSSLVNTLAGRKGLARTSSTPGKTRSINFYKVDPDGYYV 73 >gi|191165829|ref|ZP_03027667.1| putative GTPase [Escherichia coli B7A] gi|190904153|gb|EDV63864.1| putative GTPase [Escherichia coli B7A] Length = 337 Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust. Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 3/96 (3%) Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270 K+ E I I ++G + AGKSS+ NAL K +V V+D+ TR+V + + + +K Sbjct: 71 KISEAIDYEPVIGVMGKTGAGKSSVCNALFKGEVCAVSDVEACTREVQELRIRFGKHSLK 130 Query: 271 ISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305 I D G+ E + E E + R L + DLIL + Sbjct: 131 IIDIPGVGENAQLDKEYEDLYRNLL--PSLDLILWV 164 >gi|222151146|ref|YP_002560300.1| hypothetical protein MCCL_0897 [Macrococcus caseolyticus JCSC5402] gi|222120269|dbj|BAH17604.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 425 Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust. Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 2/112 (1%) Query: 193 LNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG 252 ++DI I H + + RN +++ ++G++NAGKS+ FNAL+ D + D+ Sbjct: 176 IHDIKLQLETIKQHRQRYRENRKKRNIFQVALVGYTNAGKSTWFNALSDSD-TYMEDLLF 234 Query: 253 TTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303 T D + + L EGY V +SDT G + E T E + AD+++ Sbjct: 235 ATLDPKSKMMKLHEGYPVLLSDTVGFIQQLPTHLIEAFSSTLEEAKYADILI 286 >gi|91794552|ref|YP_564203.1| GTP-binding protein, HSR1-related [Shewanella denitrificans OS217] gi|91716554|gb|ABE56480.1| GTP-binding protein, HSR1-related [Shewanella denitrificans OS217] Length = 435 Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust. Identities = 49/188 (26%), Positives = 79/188 (42%), Gaps = 40/188 (21%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRE- 279 + ++G++NAGKS+LFN L DV + T L LDL V ++DT G IR Sbjct: 200 VSLVGYTNAGKSTLFNGLTSSDVYAADQLFATLDPTLR-KLDLPDGAVILADTVGFIRHL 258 Query: 280 TDDIVEKEGIKRTFLEVENADLIL-------------------LLKEINSKKEISFPKNI 320 D+V K T E A+L+L +LKEI++ + I Sbjct: 259 PHDLV--AAFKATLQETRQAELLLHIVDCADDNMQDNFDQVQDVLKEIDADE-------I 309 Query: 321 DFIFIGTKSDLYSTYTEEYDH---------LISSFTGEGLEELINKIKSILSNKFKKLPF 371 + + K DL + D+ +S+ G+G + L+ I ++ N +L Sbjct: 310 PQLVVCNKIDLLEDFAPRIDYAEDGTPERVWLSAQKGQGFDLLLQAITELVGNIVLELTL 369 Query: 372 SIPSHKRH 379 +P+ H Sbjct: 370 KVPATGGH 377 >gi|113476463|ref|YP_722524.1| ferrous iron transport protein B [Trichodesmium erythraeum IMS101] gi|110167511|gb|ABG52051.1| ferrous iron transport protein B [Trichodesmium erythraeum IMS101] Length = 606 Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust. Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 6/103 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ ++G N GKS+ FN + A V + PG T D+ ++ + + + D GI Sbjct: 19 KVALIGMPNTGKSTFFNRITGVS-AHVGNWPGITVDLFQAEVKINKEITQFIDLPGIYNF 77 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK---KEISFPKNI 320 + E E + + FLE DL++++ INS ++I P + Sbjct: 78 NGFSEDEKVVQNFLENNPVDLVIVV--INSSQIDRQIMLPLQV 118 >gi|303228588|ref|ZP_07315415.1| hydrogenase maturation GTPase HydF [Veillonella atypica ACS-134-V-Col7a] gi|302516767|gb|EFL58682.1| hydrogenase maturation GTPase HydF [Veillonella atypica ACS-134-V-Col7a] Length = 425 Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 1/67 (1%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAG 276 N I G NAGKS+L N L + V++V+++ GTT D ++ ++ L V I+DTAG Sbjct: 8 NRVHIGFFGRCNAGKSTLINMLTDQPVSLVSEVAGTTTDPVSKSMEILPLGPVVITDTAG 67 Query: 277 IRETDDI 283 I +T ++ Sbjct: 68 IDDTSEL 74 >gi|288918466|ref|ZP_06412817.1| small GTP-binding protein [Frankia sp. EUN1f] gi|288350106|gb|EFC84332.1| small GTP-binding protein [Frankia sp. EUN1f] Length = 466 Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 29/55 (52%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 + ++G N GKS+L N + + A+V D PG TRD + D G + DT G Sbjct: 32 LAVVGRPNVGKSTLVNRILGRRAAVVEDTPGVTRDRVAYDAVWNGRRFTVVDTGG 86 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 7/90 (7%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++ ++G N GKSSL N + + ++V D+ GTTRD + + + G DTAG+R Sbjct: 205 RVALIGRPNVGKSSLLNKIVGAERSLVHDVAGTTRDPVDELVTVGGETWMFIDTAGLRRR 264 Query: 281 DDIVEKEGIK-----RTFLEVENADLILLL 305 + E G + RT +E A++ ++L Sbjct: 265 --VKEASGAEYYSSLRTASALEAAEVAIVL 292 >gi|167630513|ref|YP_001681012.1| GTP-binding protein era [Heliobacterium modesticaldum Ice1] gi|226741216|sp|B0TAF1|ERA_HELMI RecName: Full=GTPase Era gi|167593253|gb|ABZ85001.1| GTP-binding protein era [Heliobacterium modesticaldum Ice1] Length = 299 Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust. Identities = 27/64 (42%), Positives = 37/64 (57%), Gaps = 1/64 (1%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273 E +R+G+ I I+G N GKS+L N L K VAI++D P TTR+ + L+ D Sbjct: 2 EKLRSGF-ISIIGRPNVGKSTLMNQLIGKKVAIMSDKPQTTRNRIVGVLNAPKGQAIFLD 60 Query: 274 TAGI 277 T GI Sbjct: 61 TPGI 64 >gi|120597493|ref|YP_962067.1| GTP-binding protein, HSR1-related [Shewanella sp. W3-18-1] gi|146294366|ref|YP_001184790.1| GTP-binding protein, HSR1-related [Shewanella putrefaciens CN-32] gi|120557586|gb|ABM23513.1| GTP-binding protein, HSR1-related [Shewanella sp. W3-18-1] gi|145566056|gb|ABP76991.1| GTP-binding protein, HSR1-related [Shewanella putrefaciens CN-32] Length = 435 Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust. Identities = 63/227 (27%), Positives = 98/227 (43%), Gaps = 34/227 (14%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRE- 279 + ++G++NAGKS+LFNAL DV + T L LDL V ++DT G IR Sbjct: 200 VSLVGYTNAGKSTLFNALTSSDVYAADQLFATLDPTLR-KLDLPDGAVILADTVGFIRHL 258 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEI-------NSKKEISFPKNIDF-----IFIGT 327 D+V K T E A+L+L + + N ++ S K+I+ + + Sbjct: 259 PHDLV--AAFKATLQETRQAELLLHIVDCADENMADNFEQVQSVLKDIEADEVMQLIVCN 316 Query: 328 KSDLYSTYTE--EYDH-------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378 K DL T EYD +S+ G + L+ I ++ ++L IP+ Sbjct: 317 KIDLLEDVTPRIEYDDQGKPIRVWVSAQKRLGFDLLLKAITELIGEVIRELTLRIPATAG 376 Query: 379 HLYHLSQTVRYLEMASLNEKDCGLDIIAENL------RLASVSLGKI 419 H +L Q R + D G I++ L RLA S G++ Sbjct: 377 H--YLGQFYRLDAIQQKEYDDLGNCILSVRLSDADWRRLAKQSQGEL 421 >gi|309775528|ref|ZP_07670528.1| GTP-binding protein Era [Erysipelotrichaceae bacterium 3_1_53] gi|308916622|gb|EFP62362.1| GTP-binding protein Era [Erysipelotrichaceae bacterium 3_1_53] Length = 299 Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 33/56 (58%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 I I+G NAGKS+L NA+ ++ VAI T P TTR+ ++ L E DT GI Sbjct: 8 ISIIGRPNAGKSTLLNAILQEKVAITTPKPQTTRNNISGILTREDAQFVFVDTPGI 63 >gi|303245647|ref|ZP_07331930.1| small GTP-binding protein [Desulfovibrio fructosovorans JJ] gi|302492910|gb|EFL52775.1| small GTP-binding protein [Desulfovibrio fructosovorans JJ] Length = 403 Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust. Identities = 31/71 (43%), Positives = 42/71 (59%), Gaps = 6/71 (8%) Query: 218 NGYKIVI--LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDT 274 G ++VI +G NAGKSSL NA+ ++VAIV+D GTT D + +L V DT Sbjct: 10 RGVRLVITFVGRRNAGKSSLINAVTGQEVAIVSDFAGTTTDPVAKPYELLPLGPVTFYDT 69 Query: 275 AGIRETDDIVE 285 AG+ DD+ E Sbjct: 70 AGL---DDVGE 77 >gi|303288864|ref|XP_003063720.1| predicted protein [Micromonas pusilla CCMP1545] gi|226454788|gb|EEH52093.1| predicted protein [Micromonas pusilla CCMP1545] Length = 292 Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 52/90 (57%), Gaps = 2/90 (2%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R+GY + I+G NAGKS+ NAL ++IVT P TTR + + + + + + DT G Sbjct: 2 RSGY-VAIVGRPNAGKSTFMNALVGTKLSIVTYKPQTTRHRILGLVSEDDFQMVLLDTPG 60 Query: 277 I-RETDDIVEKEGIKRTFLEVENADLILLL 305 + RE + +++ +K + NAD++L + Sbjct: 61 VMREEFNKLDEMMLKSVRNAMANADVLLAI 90 >gi|320353707|ref|YP_004195046.1| iron-only hydrogenase maturation protein HydF [Desulfobulbus propionicus DSM 2032] gi|320122209|gb|ADW17755.1| iron-only hydrogenase maturation protein HydF [Desulfobulbus propionicus DSM 2032] Length = 416 Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust. Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 4/86 (4%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTAGIRE 279 I + G N GKSSL NA+ ++ VAIV+++ GTT D + ++L G ++ I DTAG+ + Sbjct: 13 IGLFGRRNVGKSSLLNAITRQQVAIVSNVAGTTTDPVEKPMELLPLGPVLFI-DTAGVDD 71 Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305 + E I RT + DL +L+ Sbjct: 72 VGALGEMR-IARTRAVFDRTDLGILV 96 >gi|113968943|ref|YP_732736.1| GTP-binding protein, HSR1-related [Shewanella sp. MR-4] gi|114048919|ref|YP_739469.1| GTP-binding protein, HSR1-related [Shewanella sp. MR-7] gi|113883627|gb|ABI37679.1| GTP-binding protein, HSR1-related [Shewanella sp. MR-4] gi|113890361|gb|ABI44412.1| GTP-binding protein, HSR1-related [Shewanella sp. MR-7] Length = 435 Score = 44.3 bits (103), Expect = 0.036, Method: Compositional matrix adjust. Identities = 63/227 (27%), Positives = 97/227 (42%), Gaps = 34/227 (14%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRE- 279 + ++G++NAGKS+LFNAL DV + T L LDL V ++DT G IR Sbjct: 200 VSLVGYTNAGKSTLFNALTSSDVYAADQLFATLDPTLR-KLDLPDGAVILADTVGFIRHL 258 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEI-------NSKKEISFPKNIDF-----IFIGT 327 D+V K T E ADL+L + + N ++ + ++ID + + Sbjct: 259 PHDLV--AAFKATLQETRQADLLLHIVDCADENMADNFEQVQNVLEDIDAAGVMQLVVCN 316 Query: 328 KSDLYSTYTE--EYDH-------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378 K DL T EYD +S+ G + L+ I ++ +L IP+ Sbjct: 317 KIDLLEDVTPRIEYDEHSKPVRVWVSAQKRLGFDLLLKAITELIGEVIHELTLKIPATAG 376 Query: 379 HLYHLSQTVRYLEMASLNEKDCGLDIIAENL------RLASVSLGKI 419 H +L Q R + D G I++ L RLA S G++ Sbjct: 377 H--YLGQFYRLDAIQQKEYDDLGNCILSVRLSDADWRRLAKQSQGEL 421 >gi|300023748|ref|YP_003756359.1| GTP-binding protein Era [Hyphomicrobium denitrificans ATCC 51888] gi|299525569|gb|ADJ24038.1| GTP-binding protein Era [Hyphomicrobium denitrificans ATCC 51888] Length = 312 Score = 44.3 bits (103), Expect = 0.036, Method: Compositional matrix adjust. Identities = 33/90 (36%), Positives = 53/90 (58%), Gaps = 3/90 (3%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTIDLDLEGYLVKISDTA 275 R G+ + +LG +NAGKS+L NAL VAIV+ TTR + I ++ + +V + DTA Sbjct: 17 RCGF-VTVLGPTNAGKSTLVNALVGTKVAIVSHKVQTTRAPIRGIAVEGQSQIVFL-DTA 74 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLL 305 GI +++ I + +E+AD +LL+ Sbjct: 75 GIFNPKRRLDRAMIDAAWSGLEDADAVLLV 104 >gi|194476731|ref|YP_002048910.1| hypothetical protein PCC_0251 [Paulinella chromatophora] gi|171191738|gb|ACB42700.1| hypothetical protein PCC_0251 [Paulinella chromatophora] Length = 518 Score = 44.3 bits (103), Expect = 0.036, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 66/135 (48%), Gaps = 11/135 (8%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS- 272 E+ R + IV+ G ++GK+SL AL +K V V G+T D L + ++G K++ Sbjct: 119 ELERGDFLIVLFGAGSSGKTSLVRALLEKKVGRVEASMGSTVDCLNYRMHIQGLKRKLTL 178 Query: 273 -DTAGIRETDDIVEKEGIKRTFLEVENADLILL-------LKEINSKKEISFPKNIDFIF 324 DT GI E + IK + + ADL+LL L+E+ + + + + + Sbjct: 179 IDTPGIFEAGQQGQLREIKARW-QASRADLVLLIVDSDLRLEEMEAIRSLKALRK-RLLI 236 Query: 325 IGTKSDLYSTYTEEY 339 + KSDL + E + Sbjct: 237 VLNKSDLLTEQEENF 251 >gi|160947545|ref|ZP_02094712.1| hypothetical protein PEPMIC_01480 [Parvimonas micra ATCC 33270] gi|158446679|gb|EDP23674.1| hypothetical protein PEPMIC_01480 [Parvimonas micra ATCC 33270] Length = 298 Score = 44.3 bits (103), Expect = 0.036, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 76/152 (50%), Gaps = 19/152 (12%) Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 I++G+ + I+G SN GKS+L N + + ++I++ P TTR L + + + DT Sbjct: 4 IKSGF-VTIVGRSNVGKSTLLNRIIGEKISIISSKPQTTRANLKLIYNSLDSQIVFLDTP 62 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK------------KEISFPKNIDFI 323 GI+ + + + +K + + + DLIL + ++N + ++I+ PK I Sbjct: 63 GIQNPKNKLGEFMLKESRSSLRDVDLILYMVDVNFEIGELDNLIIDILRKINLPK----I 118 Query: 324 FIGTKSDLYSTYTEEYDHLISSFTGEGLEELI 355 + K D + +EE L+S + G L E I Sbjct: 119 CVINKID--TLNSEELSKLVSKYEGMELFEKI 148 >gi|153816261|ref|ZP_01968929.1| hypothetical protein RUMTOR_02510 [Ruminococcus torques ATCC 27756] gi|145846444|gb|EDK23362.1| hypothetical protein RUMTOR_02510 [Ruminococcus torques ATCC 27756] Length = 408 Score = 44.3 bits (103), Expect = 0.036, Method: Compositional matrix adjust. Identities = 29/82 (35%), Positives = 50/82 (60%), Gaps = 4/82 (4%) Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDTAGIRETDDI 283 G NAGKSS+ NA+ +D+A+V+D+ GTT D + ++L G +V I DT GI + ++ Sbjct: 18 GRRNAGKSSVMNAVTGQDLAVVSDVKGTTTDPVYKSMELLPIGPVVMI-DTPGIDDEGEL 76 Query: 284 VEKEGIKRTFLEVENADLILLL 305 K +K+++ + D +L+ Sbjct: 77 -GKLRVKKSYQTLNKTDAAVLV 97 >gi|89891790|ref|ZP_01203292.1| GTP-binding protein [Flavobacteria bacterium BBFL7] gi|89515945|gb|EAS18610.1| GTP-binding protein [Flavobacteria bacterium BBFL7] Length = 300 Score = 44.3 bits (103), Expect = 0.036, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 58/104 (55%), Gaps = 8/104 (7%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 I+G+ N GKS+L NAL + ++I+T TTR + ++ E + + +SDT GI + Sbjct: 14 IVGNPNVGKSTLMNALVGERLSIITSKAQTTRHRILGIVNGEDFQIVLSDTPGIIKPAYK 73 Query: 284 VEK---EGIKRTFLEVENADLILLLKEINSK--KEISFPKNIDF 322 +++ E +K F E+AD IL + E+ K K +F K + + Sbjct: 74 LQESMMEFVKNAF---EDADCILYMVELGEKELKNEAFEKRLTY 114 >gi|261250990|ref|ZP_05943564.1| 50S ribosomal subunit maturation GTPase RbgA [Vibrio orientalis CIP 102891] gi|260937863|gb|EEX93851.1| 50S ribosomal subunit maturation GTPase RbgA [Vibrio orientalis CIP 102891] Length = 311 Score = 44.3 bits (103), Expect = 0.036, Method: Compositional matrix adjust. Identities = 33/104 (31%), Positives = 57/104 (54%), Gaps = 13/104 (12%) Query: 178 FSEEEDVQNF----SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233 F +E +V+ S ++ +N I+ L ++ H + ++G+ IR +I+G N GKS Sbjct: 75 FEKEHNVKAIAITTSQQQEVNRIMELVRKLAPH--REEIGKNIRT----MIMGIPNVGKS 128 Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 ++ NALA + +A+ + P TR I+L G + +SDT GI Sbjct: 129 TIINALAGRTIAVTGNQPAVTRRQQRINLQ-NG--IVLSDTPGI 169 >gi|221061357|ref|XP_002262248.1| gtp binding protein [Plasmodium knowlesi strain H] gi|193811398|emb|CAQ42126.1| gtp binding protein, putative [Plasmodium knowlesi strain H] Length = 831 Score = 44.3 bits (103), Expect = 0.036, Method: Compositional matrix adjust. Identities = 30/94 (31%), Positives = 54/94 (57%), Gaps = 3/94 (3%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKK--DVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 +IIRN I I+G N GKS++FN L +K + +IV +TRD + ++D +GY ++ Sbjct: 254 KIIRNLPLISIIGRPNVGKSTIFNRLTRKFQEGSIVLG-ESSTRDKIYGEVDWDGYKFEV 312 Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 DT G+ D+ K+ + L ++ + ++L + Sbjct: 313 VDTGGLIFEDEKFCKQIRDQIMLALKESSVVLFV 346 >gi|62320818|dbj|BAD93758.1| hypothetical protein [Arabidopsis thaliana] Length = 370 Score = 44.3 bits (103), Expect = 0.036, Method: Compositional matrix adjust. Identities = 20/38 (52%), Positives = 26/38 (68%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 ++ I+G N GKS+LFN L ++ AIV D PG TRD L Sbjct: 160 RVAIVGRPNVGKSALFNRLVGENRAIVVDEPGVTRDRL 197 >gi|310778258|ref|YP_003966591.1| iron-only hydrogenase maturation protein HydF [Ilyobacter polytropus DSM 2926] gi|309747581|gb|ADO82243.1| iron-only hydrogenase maturation protein HydF [Ilyobacter polytropus DSM 2926] Length = 409 Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust. Identities = 45/132 (34%), Positives = 68/132 (51%), Gaps = 20/132 (15%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDTAGIRE 279 I I G N GKS+L NAL +++AIV++ GTT D + +++ G V I DTAG+ + Sbjct: 15 IAIFGKRNMGKSTLINALTGQNLAIVSEYAGTTTDPVYKAMEILPIGPCV-IIDTAGLDD 73 Query: 280 TDDIVEKEGIKRTFLEVENADLILLL----------KEINSKKEISFPKNIDFIFIGTKS 329 D+ E +K++ ++ D+ LL +EI E KNI FI + K Sbjct: 74 LGDLGELR-VKKSLEVLKKTDIALLTVTGEGFSDFDREIIKLLE---EKNIPFITVINKK 129 Query: 330 DLY---STYTEE 338 D+ S +TEE Sbjct: 130 DIIPANSEFTEE 141 >gi|289192710|ref|YP_003458651.1| small GTP-binding protein [Methanocaldococcus sp. FS406-22] gi|288939160|gb|ADC69915.1| small GTP-binding protein [Methanocaldococcus sp. FS406-22] Length = 185 Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 54/98 (55%), Gaps = 14/98 (14%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR----------DVLTIDLDLEGYLV 269 +KI I+G NAGKSS+ NAL K V++V+++ GTT+ + I + E + Sbjct: 6 FKIAIIGPENAGKSSIMNALFGKYVSLVSEVGGTTKMPIKRYWGKLKIGRIKEEPEFVNL 65 Query: 270 KISDTAGIRETDD----IVEKEGIKRTFLEVENADLIL 303 D G+ T D I+ + +++TF E+ ++D+I+ Sbjct: 66 VFVDLGGLYTTTDKQSPIMTPKVLEKTFEEINDSDMII 103 >gi|77919228|ref|YP_357043.1| GTPases [Pelobacter carbinolicus DSM 2380] gi|77545311|gb|ABA88873.1| iron-only hydrogenase maturation protein HydF [Pelobacter carbinolicus DSM 2380] Length = 416 Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust. Identities = 42/166 (25%), Positives = 75/166 (45%), Gaps = 18/166 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAGIRET 280 I + G N GKSSL NAL +++V+IV+++ GTT D + ++ L V DTAGI + Sbjct: 12 IGLFGRRNVGKSSLLNALTRQNVSIVSNVAGTTTDAVEKPMEMLPIGPVLFIDTAGIDDV 71 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS-------FPKNIDFIFIGTKSDLYS 333 + E +++T + D+ L++ E + + I + + K+D+ Sbjct: 72 GALGEMR-VQKTRQVFDRTDIGLIVAEAGRWDDFEDAILAELQQRQIPVVVVFNKTDIAQ 130 Query: 334 TYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLP 370 T + L ++ GEG+ EL + + +F P Sbjct: 131 PDTGHLESLSQKDVPCVATAAEKGEGIIELRESLIRTVPEEFINPP 176 >gi|291484291|dbj|BAI85366.1| hypothetical protein BSNT_02799 [Bacillus subtilis subsp. natto BEST195] Length = 460 Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust. Identities = 34/91 (37%), Positives = 49/91 (53%), Gaps = 3/91 (3%) Query: 217 RNGY-KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDT 274 +NG +I ++G++NAGKS+ FN L D + D+ T D +T + L GY V +SDT Sbjct: 237 KNGVLQIALVGYTNAGKSTWFNRLTSAD-SYEEDLLFATLDPMTRKMVLPSGYSVLLSDT 295 Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLL 305 G + + T EV+ ADLIL L Sbjct: 296 VGFIQDLPTTLIAAFRSTLEEVKEADLILHL 326 >gi|295399214|ref|ZP_06809196.1| GTP-binding protein Era [Geobacillus thermoglucosidasius C56-YS93] gi|312110184|ref|YP_003988500.1| GTP-binding protein Era [Geobacillus sp. Y4.1MC1] gi|294978680|gb|EFG54276.1| GTP-binding protein Era [Geobacillus thermoglucosidasius C56-YS93] gi|311215285|gb|ADP73889.1| GTP-binding protein Era [Geobacillus sp. Y4.1MC1] Length = 302 Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust. Identities = 52/185 (28%), Positives = 83/185 (44%), Gaps = 38/185 (20%) Query: 217 RNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD----VLTID------LD 263 + GYK + I+G N GKS+ N + + +AI++D P TTR+ V T D +D Sbjct: 3 KEGYKSGFVSIVGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKIQGVYTTDDAQIIFID 62 Query: 264 LEG----------YLVKISDTAGIRETDDIV----EKEGIKRTFLEVENADLILLLKEIN 309 G +++K++ A ++E D I+ +EG R +A +I LKE+N Sbjct: 63 TPGMHKPKHKLGDFMMKVALNA-LKEVDLILFMINAEEGFGRG-----DAYIIERLKEVN 116 Query: 310 SKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL----ISSFTGEGLEELINKIKSILSNK 365 + + K ID + L Y E Y IS+ G +E L+ +IK L Sbjct: 117 TPVFLVINK-IDLVHPNDLLPLIDRYKELYPFAEIIPISALQGNNIETLVEQIKKYLPEG 175 Query: 366 FKKLP 370 + P Sbjct: 176 PQYYP 180 >gi|255087368|ref|XP_002505607.1| predicted protein [Micromonas sp. RCC299] gi|226520877|gb|ACO66865.1| predicted protein [Micromonas sp. RCC299] Length = 292 Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 52/90 (57%), Gaps = 2/90 (2%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R+GY + I+G NAGKS+L N L ++IVT P TTR + + + Y + + DT G Sbjct: 2 RSGY-VAIVGRPNAGKSTLLNQLVGTKLSIVTFKPQTTRHRILGIVSEDHYQMVLLDTPG 60 Query: 277 I-RETDDIVEKEGIKRTFLEVENADLILLL 305 + +E + +++ +K + NAD++L + Sbjct: 61 VMKEEFNKLDEMMLKSVRNAMANADVLLAI 90 >gi|282600026|ref|ZP_05972754.2| putative GTP-binding protein [Providencia rustigianii DSM 4541] gi|282566797|gb|EFB72332.1| putative GTP-binding protein [Providencia rustigianii DSM 4541] Length = 297 Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust. Identities = 21/71 (29%), Positives = 36/71 (50%) Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269 +L +I I ++G + AGKSSL NAL + ++ V D+ G TR + + + + Sbjct: 31 NQLNHLINYSPTIGLMGKTGAGKSSLINALFQSSLSPVNDVSGCTRQAQRFSMTMNNHTL 90 Query: 270 KISDTAGIRET 280 D G+ E+ Sbjct: 91 TFVDLPGVGES 101 >gi|167766294|ref|ZP_02438347.1| hypothetical protein CLOSS21_00798 [Clostridium sp. SS2/1] gi|167712013|gb|EDS22592.1| hypothetical protein CLOSS21_00798 [Clostridium sp. SS2/1] gi|291559076|emb|CBL37876.1| iron-only hydrogenase maturation protein HydF [butyrate-producing bacterium SSC/2] Length = 402 Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust. Identities = 30/86 (34%), Positives = 53/86 (61%), Gaps = 4/86 (4%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTAGIRE 279 I + G NAGKSS+ NA+ +++AIV+++ GTT D + ++L G +V I DT G+ + Sbjct: 14 IALFGKRNAGKSSVINAMTNQELAIVSNVKGTTTDPVYKAMELLPLGPVVMI-DTPGLDD 72 Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305 ++ EK +K+ + AD+ L++ Sbjct: 73 EGELGEKR-VKKAKEVLAKADIALVI 97 >gi|330993373|ref|ZP_08317308.1| GTP-binding protein era-like protein [Gluconacetobacter sp. SXCC-1] gi|329759403|gb|EGG75912.1| GTP-binding protein era-like protein [Gluconacetobacter sp. SXCC-1] Length = 305 Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust. Identities = 41/168 (24%), Positives = 83/168 (49%), Gaps = 24/168 (14%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTIDLDLEGYLVKISDTA 275 R G+ + I+G NAGKS+L N +A ++IV+ TTR VL I L G + + DT Sbjct: 12 RCGF-VAIVGAPNAGKSTLLNRMAGTKLSIVSPKAQTTRFRVLGI-LMRHGAQILLVDTP 69 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINS----------------KKEISFPKN 319 GI + +++ + + ++AD+ LL+ + + K+ + N Sbjct: 70 GIFQPRRRLDRAMVAAAWTGSDDADITLLIVDARAGMTDALRAIAARLAEQKRRLWLVLN 129 Query: 320 -IDFI----FIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362 D + + ++L + E+ ++S+ +GEG+++L++++ + L Sbjct: 130 KTDLVKRDTLLPLTAELSAILPVEHVFMVSARSGEGVDDLLDRLAAAL 177 >gi|325973342|ref|YP_004250406.1| GTP-binding protein engA [Mycoplasma suis str. Illinois] gi|325989778|ref|YP_004249477.1| GTP-binding protein EngA [Mycoplasma suis KI3806] gi|323574863|emb|CBZ40523.1| GTP-binding protein EngA [Mycoplasma suis] gi|323651944|gb|ADX98026.1| GTP-binding protein engA [Mycoplasma suis str. Illinois] Length = 456 Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust. Identities = 39/136 (28%), Positives = 67/136 (49%), Gaps = 24/136 (17%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ I+G N GKSSL NAL + IV+ I GTT D++ + G + D+ G ++ Sbjct: 195 KLGIVGKVNVGKSSLANALLSSNAIIVSPIEGTTVDLVEYSISHNGKTYLLIDSPGWKK- 253 Query: 281 DDIVEKEGIK----------RTFLEVENADLILLL----KEINS-----KKEISFPKNID 321 ++KEG++ R+ ++ A+++L + + IN KEI F N+ Sbjct: 254 ---MKKEGLRNEELDHLCWVRSKKAIKAANILLFVIDPSQPINHLDEKVAKEI-FESNLP 309 Query: 322 FIFIGTKSDLYSTYTE 337 + + K DL S + + Sbjct: 310 VVIVANKWDLMSYHPD 325 >gi|213422212|ref|ZP_03355278.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 32 Score = 44.3 bits (103), Expect = 0.038, Method: Composition-based stats. Identities = 21/30 (70%), Positives = 24/30 (80%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDI 250 K+VI G NAGKSSL NALA ++ AIVTDI Sbjct: 2 KVVIAGRPNAGKSSLLNALAGREAAIVTDI 31 >gi|170760642|ref|YP_001788927.1| GTP-binding protein [Clostridium botulinum A3 str. Loch Maree] gi|169407631|gb|ACA56042.1| GTP-binding protein [Clostridium botulinum A3 str. Loch Maree] Length = 397 Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust. Identities = 40/126 (31%), Positives = 66/126 (52%), Gaps = 16/126 (12%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276 N I +G +N+GKSSL NA+ +D++IV+ I GTT D ++ ++ V +DTAG Sbjct: 8 NRIHITFIGKTNSGKSSLMNAIIGQDISIVSSIEGTTTDPVSKAMEFIPLGPVLFTDTAG 67 Query: 277 IRETDDI----VEK--EGIKRT-----FLEVENADLILLLKEINSKKEISFPKNIDFIFI 325 + + + +EK + RT + E+ D+ L K IN K+ +NI +I + Sbjct: 68 LEDNTKLGKMRIEKTLNTLLRTDFAVYVMSAEDIDINLYEKTINKFKK----QNISYITV 123 Query: 326 GTKSDL 331 K D+ Sbjct: 124 INKMDI 129 >gi|298674508|ref|YP_003726258.1| GTP-binding protein HflX [Methanohalobium evestigatum Z-7303] gi|298287496|gb|ADI73462.1| GTP-binding protein HflX [Methanohalobium evestigatum Z-7303] Length = 418 Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust. Identities = 34/96 (35%), Positives = 53/96 (55%), Gaps = 2/96 (2%) Query: 219 GYKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 G+ +V L G++NAGKS+LFN + +DV V D+ TT +T L+L G V ++DT G Sbjct: 189 GFSLVALAGYTNAGKSTLFNTIVDEDVR-VEDMLFTTLSPVTRSLNLGGRHVLLTDTVGF 247 Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313 E + + T E+ D+ILL+ ++ E Sbjct: 248 IEDLPHWMIDAFRSTLDEIFLTDVILLVVDVAEDAE 283 >gi|322380637|ref|ZP_08054789.1| GTP-binding protein Era [Helicobacter suis HS5] gi|321146959|gb|EFX41707.1| GTP-binding protein Era [Helicobacter suis HS5] Length = 311 Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust. Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 6/97 (6%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-----IDLDLEGYLVKISDTAG 276 I ++G NAGKS+L NAL + + +++ TR +L + D+E +V + DT G Sbjct: 22 IALIGRPNAGKSTLINALVYERLCLISHKANATRKILKAIVPYMQGDIECQMVFL-DTPG 80 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313 I + ++ + IK+ +E+ DL + L I+ E Sbjct: 81 ICKPTKLLNQAMIKQIRHALESCDLAIFLASIHDSPE 117 >gi|317154877|ref|YP_004122925.1| GTP-binding protein Era [Desulfovibrio aespoeensis Aspo-2] gi|316945128|gb|ADU64179.1| GTP-binding protein Era [Desulfovibrio aespoeensis Aspo-2] Length = 302 Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G NAGKS+L N L + VAIV+ P TTR+ ++ L + V DT GI + Sbjct: 7 VALIGPPNAGKSTLMNQLLGQKVAIVSPRPQTTRNRISGILSTDEAQVVFLDTPGIHQLR 66 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + ++ + + AD++++L Sbjct: 67 GKMNRFLLEAAWSALAGADVVVVL 90 >gi|83815627|ref|YP_446187.1| GTP-binding protein Era [Salinibacter ruber DSM 13855] gi|294508113|ref|YP_003572171.1| GTP-binding protein [Salinibacter ruber M8] gi|83757021|gb|ABC45134.1| GTP-binding protein Era [Salinibacter ruber DSM 13855] gi|294344441|emb|CBH25219.1| GTP-binding protein [Salinibacter ruber M8] Length = 304 Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust. Identities = 34/91 (37%), Positives = 50/91 (54%), Gaps = 3/91 (3%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAG 276 +GY + I+G N GKS+L NAL + ++IVT P TTR VL I E + + DT G Sbjct: 17 SGY-VAIVGKPNVGKSTLMNALLGEKLSIVTKKPQTTRHRVLGIHSGPEHQAIFL-DTPG 74 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKE 307 I E + + + + + +ADL+L L E Sbjct: 75 IIEPRYALHETMMGQVQGAIRDADLLLFLHE 105 >gi|172057117|ref|YP_001813577.1| GTP-binding proten HflX [Exiguobacterium sibiricum 255-15] gi|171989638|gb|ACB60560.1| GTP-binding proten HflX [Exiguobacterium sibiricum 255-15] Length = 413 Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust. Identities = 51/194 (26%), Positives = 90/194 (46%), Gaps = 22/194 (11%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIR 278 ++I ++G++NAGKS++FN L D ++ T D LT LDL EG + ++DT G Sbjct: 199 FQIALVGYTNAGKSTIFNRLTNADTYEKNELFATL-DPLTRQLDLPEGGQILLTDTVGF- 256 Query: 279 ETDDIVEK--EGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF------------ 324 D+ K + T EV ADLIL + + +S+ ++ + + + Sbjct: 257 -IQDLPTKLIAAFRSTLEEVLEADLILHVIDASSEHYLNQMQTTNDVLDELGAGDIPQLE 315 Query: 325 IGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLS 384 + K D + LIS+ ++ L +I+ +S+ + L IP H Y+ + Sbjct: 316 VFNKKDQLTHLFSGGKLLISALDPADIDRLTVEIEKAISDILEYLEIRIPVHAFAHYNPA 375 Query: 385 QTVRYLEMASLNEK 398 + V M +L E+ Sbjct: 376 KEV----MMNLTEQ 385 >gi|146320205|ref|YP_001199916.1| GTP-binding protein YqeH [Streptococcus suis 98HAH33] gi|253751231|ref|YP_003024372.1| GTP-binding protein [Streptococcus suis SC84] gi|253753132|ref|YP_003026272.1| GTP-binding protein [Streptococcus suis P1/7] gi|253754955|ref|YP_003028095.1| GTP-binding protein [Streptococcus suis BM407] gi|330832202|ref|YP_004401027.1| GTP-binding protein YqeH [Streptococcus suis ST3] gi|145691011|gb|ABP91516.1| Predicted GTPase [Streptococcus suis 98HAH33] gi|251815520|emb|CAZ51100.1| GTP-binding protein [Streptococcus suis SC84] gi|251817419|emb|CAZ55157.1| GTP-binding protein [Streptococcus suis BM407] gi|251819377|emb|CAR44789.1| GTP-binding protein [Streptococcus suis P1/7] gi|292557796|gb|ADE30797.1| GTP-binding protein [Streptococcus suis GZ1] gi|319757506|gb|ADV69448.1| GTP-binding protein YqeH [Streptococcus suis JS14] gi|329306425|gb|AEB80841.1| GTP-binding protein YqeH [Streptococcus suis ST3] Length = 368 Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust. Identities = 36/112 (32%), Positives = 50/112 (44%), Gaps = 15/112 (13%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 R G + ++G +N GKS+L NA+ + KDV + PGTT D + I LD Y I Sbjct: 161 RKGRDVYVVGVTNVGKSTLINAIIQEITGDKDVITTSRFPGTTLDKIEIPLDDGSY---I 217 Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI 323 DT GI + +L +N I KEI K P+ F+ Sbjct: 218 YDTPGIIHRHQMAH-------YLTAKNLKYISPRKEIKPKTYQLNPEQTLFL 262 >gi|89895851|ref|YP_519338.1| hypothetical protein DSY3105 [Desulfitobacterium hafniense Y51] gi|89335299|dbj|BAE84894.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 303 Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust. Identities = 47/175 (26%), Positives = 76/175 (43%), Gaps = 29/175 (16%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R+G+ + ++G NAGKS+L N L + + I++D P TTR+ + L E + DT G Sbjct: 11 RSGF-VTVVGRPNAGKSTLLNQLLGQKILIMSDKPQTTRNKIHCILTEERGQIVFLDTPG 69 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK------------KEISFP-----KN 319 I + + + + + DLIL + + ++ K + P Sbjct: 70 IHKPKHKLGEFMVDSALESLREVDLILYMVDTTAEFGAGEEYILENLKHVKTPCILLLNK 129 Query: 320 IDFIFIGTKSDLYSTYTEEYDHL----ISSFTGEGLEELINKIKSILSNKFKKLP 370 ID I L Y+ D L IS+ TGE +EL+ I FK++P Sbjct: 130 IDLIEKDKLLKLIKDYSALKDFLAILPISAKTGENKDELLKLI-------FKEMP 177 >gi|223932251|ref|ZP_03624255.1| Nitric-oxide synthase [Streptococcus suis 89/1591] gi|223899232|gb|EEF65589.1| Nitric-oxide synthase [Streptococcus suis 89/1591] Length = 368 Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust. Identities = 36/112 (32%), Positives = 50/112 (44%), Gaps = 15/112 (13%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 R G + ++G +N GKS+L NA+ + KDV + PGTT D + I LD Y I Sbjct: 161 RKGRDVYVVGVTNVGKSTLINAIIQEITGDKDVITTSRFPGTTLDKIEIPLDDGSY---I 217 Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI 323 DT GI + +L +N I KEI K P+ F+ Sbjct: 218 YDTPGIIHRHQMAH-------YLTAKNLKYISPRKEIKPKTYQLNPEQTLFL 262 >gi|285017649|ref|YP_003375360.1| GTP-binding protein [Xanthomonas albilineans GPE PC73] gi|283472867|emb|CBA15372.1| probable gtp-binding protein [Xanthomonas albilineans] Length = 207 Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 1/55 (1%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKD-VAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 +G+++ G SNAGKSS NAL +++ +A V+ PG T+ ++ + E YLV + Sbjct: 24 DGWEVAFAGRSNAGKSSALNALTRQNALARVSKTPGRTQQLVFFQVQPERYLVDL 78 >gi|251781782|ref|YP_002996084.1| GTP-binding protein YqeH [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390411|dbj|BAH80870.1| GTP-binding protein [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 372 Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 8/67 (11%) Query: 216 IRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270 +RNG + ++G +N GKS+L NA+ + KDV + PGTT D + I LD + Sbjct: 160 LRNGRDVYVVGVTNVGKSTLINAIIQEITGDKDVITTSRFPGTTLDKIEIPLDDGSF--- 216 Query: 271 ISDTAGI 277 I DT GI Sbjct: 217 IFDTPGI 223 >gi|150391794|ref|YP_001321843.1| small GTP-binding protein [Alkaliphilus metalliredigens QYMF] gi|149951656|gb|ABR50184.1| small GTP-binding protein [Alkaliphilus metalliredigens QYMF] Length = 399 Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust. Identities = 20/39 (51%), Positives = 25/39 (64%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 N I I G N GKSSL NAL +D+A+V+ + GTT D Sbjct: 8 NRLHIAIFGRRNVGKSSLINALTDQDIAVVSQVAGTTTD 46 >gi|302339894|ref|YP_003805100.1| small GTP-binding protein [Spirochaeta smaragdinae DSM 11293] gi|301637079|gb|ADK82506.1| small GTP-binding protein [Spirochaeta smaragdinae DSM 11293] Length = 414 Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust. Identities = 28/57 (49%), Positives = 35/57 (61%), Gaps = 1/57 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGI 277 I I G NAGKSS+ NAL K+ V+IV+D GTT D + ++L V DTAGI Sbjct: 12 IGIFGKRNAGKSSILNALTKQQVSIVSDQAGTTTDPVEKPMELLPLGPVLFIDTAGI 68 >gi|163867993|ref|YP_001609197.1| GTP-binding protein Era [Bartonella tribocorum CIP 105476] gi|161017644|emb|CAK01202.1| GTP-binding protein Era [Bartonella tribocorum CIP 105476] Length = 303 Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust. Identities = 50/194 (25%), Positives = 88/194 (45%), Gaps = 38/194 (19%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV---LTIDLDLEGYLVKISD 273 R+G+ +V++G NAGKS+L N L V+IVT TTR + + I D++ LV D Sbjct: 10 RSGF-VVLIGMPNAGKSTLVNQLVGTKVSIVTHKVQTTRTLIRGIVIHDDVQIVLV---D 65 Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIG------- 326 T G+ +E+ + + ++AD++L+L + S + +D + Sbjct: 66 TPGVFRPHKRLERAMVSAAWGGAKSADVLLVLIDAQSGLSDEVDRMLDIVNTMKQEKVLV 125 Query: 327 -------TKSDLYSTYTEEYDH-------LISSFTGEGLEELINKIKSILSNKFKKLPFS 372 KS L + T+ + +IS+ G G ++L++ LSN ++ P+ Sbjct: 126 LNKVDTVVKSSLLALTTKINERVKFAQTFMISALNGSGCKDLLHA----LSNMMQEGPWY 181 Query: 373 IPSHK------RHL 380 P + RHL Sbjct: 182 YPEDQISDMPMRHL 195 >gi|119356257|ref|YP_910901.1| GTP-binding protein Era [Chlorobium phaeobacteroides DSM 266] gi|119353606|gb|ABL64477.1| GTP-binding protein Era [Chlorobium phaeobacteroides DSM 266] Length = 305 Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust. Identities = 28/83 (33%), Positives = 45/83 (54%) Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282 VI+G NAGKS+L N L ++IVT P TTR +T + + DT GI + Sbjct: 12 VIIGAPNAGKSTLLNKLLDYKLSIVTPKPQTTRKRITGIYHKDQCQIIFLDTPGIMKPQQ 71 Query: 283 IVEKEGIKRTFLEVENADLILLL 305 + + ++ T +++AD++L L Sbjct: 72 KLHESMLEITRATLKDADVVLAL 94 >gi|83953588|ref|ZP_00962309.1| GTP-binding protein HflX [Sulfitobacter sp. NAS-14.1] gi|83841533|gb|EAP80702.1| GTP-binding protein HflX [Sulfitobacter sp. NAS-14.1] Length = 412 Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust. Identities = 52/192 (27%), Positives = 81/192 (42%), Gaps = 27/192 (14%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280 + ++G++NAGKS+LFN + DV + D+ T D L L +G + +SDT G Sbjct: 194 VALVGYTNAGKSTLFNRMTGADV-MAKDMLFATLDPTMRSLVLPDGPEIILSDTVGFISD 252 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF--IGTKSDLYS-TYTE 337 + T EV AD+I +++I+ + S +N+ I +G D S Sbjct: 253 LPTELVAAFRATLEEVLAADIICHVRDISHAETESQARNVRDILTSLGVPKDTRSFEVWN 312 Query: 338 EYDHL--------------------ISSFTGEGLEELINKIKSILSNKFK--KLPFSIPS 375 + D L IS+ TGEGLEEL I L + +L + Sbjct: 313 KLDQLDDDRAAAVRARAQRDDSVLAISAITGEGLEELQAVIAEALQGAVREAELTLAFAD 372 Query: 376 HKRHLYHLSQTV 387 K+ + Q V Sbjct: 373 GKKRAWLFEQDV 384 >gi|332297854|ref|YP_004439776.1| ferrous iron transport protein B [Treponema brennaborense DSM 12168] gi|332180957|gb|AEE16645.1| ferrous iron transport protein B [Treponema brennaborense DSM 12168] Length = 714 Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 4/85 (4%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIR 278 YKI + G+ N GK++LFN L + V + PG T V + L+GY V + D GI Sbjct: 3 YKIALAGNPNCGKTTLFNVLTGSN-QFVGNWPGVT--VEKKEGKLKGYTDVTVMDLPGIY 59 Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303 ++E + R +L E D+IL Sbjct: 60 SLSPYTQEEVVSRNYLVNERPDVIL 84 >gi|154498351|ref|ZP_02036729.1| hypothetical protein BACCAP_02340 [Bacteroides capillosus ATCC 29799] gi|150272662|gb|EDM99840.1| hypothetical protein BACCAP_02340 [Bacteroides capillosus ATCC 29799] Length = 297 Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust. Identities = 53/196 (27%), Positives = 85/196 (43%), Gaps = 22/196 (11%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273 EI ++G I I+G N GKS+L NAL + +AIVT+ P TTR+ + L+ D Sbjct: 2 EIKKSGM-IAIVGRPNVGKSTLTNALVGEKIAIVTNKPQTTRNRICAVLNRGECQFVFMD 60 Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------------INSKKEISFPKNID 321 T G+ + +K V + D ++LL E I K + P + Sbjct: 61 TPGLHRARTRLGDYMVKVVRDSVADVDAVMLLVEPIPHVGGPEEELIERIKALGVPSVLV 120 Query: 322 FIFIGT-KSD----LYSTYTEE--YDHL--ISSFTGEGLEELINKIKSILSNKFKKLPFS 372 I T K D + Y E+ +D + IS+ EGLE+L+ + L + P Sbjct: 121 INKIDTVKKDELLAVMQAYGEKHSFDAILPISAKNSEGLEDLLKVLGEFLPEGPQLFPED 180 Query: 373 IPSHKRHLYHLSQTVR 388 + + + ++ VR Sbjct: 181 MVTDQPERQVCAEIVR 196 >gi|94993651|ref|YP_601749.1| GTP-binding protein YqeH [Streptococcus pyogenes MGAS10750] gi|94547159|gb|ABF37205.1| GTP-binding protein [Streptococcus pyogenes MGAS10750] Length = 372 Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 8/67 (11%) Query: 216 IRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270 +RNG + ++G +N GKS+L NA+ + KDV + PGTT D + I LD + Sbjct: 160 LRNGRDVYVVGVTNVGKSTLINAIIQEITGDKDVITTSRFPGTTLDKIEIPLDDGSF--- 216 Query: 271 ISDTAGI 277 I DT GI Sbjct: 217 IFDTPGI 223 >gi|289547931|ref|YP_003472919.1| ribosome biogenesis GTP-binding protein YsxC [Thermocrinis albus DSM 14484] gi|289181548|gb|ADC88792.1| ribosome biogenesis GTP-binding protein YsxC [Thermocrinis albus DSM 14484] Length = 171 Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust. Identities = 28/74 (37%), Positives = 37/74 (50%), Gaps = 2/74 (2%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 +V++G SN GKSSL N L K V V+ PG TR V I + YLV + R + Sbjct: 10 VVLVGRSNVGKSSLINMLLGKKVVAVSKDPGRTRRVTFIPFGEKVYLVDVPGYGYARVSH 69 Query: 282 DIVEKEGIKRTFLE 295 E+E +R E Sbjct: 70 R--EREAWRRMMEE 81 >gi|269120434|ref|YP_003308611.1| GTP-binding protein HSR1-related protein [Sebaldella termitidis ATCC 33386] gi|268614312|gb|ACZ08680.1| GTP-binding protein HSR1-related protein [Sebaldella termitidis ATCC 33386] Length = 379 Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%) Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 V+LG +N GKSS N+L +KD + ++ PGTT + +I ++G +KI DT G+ Sbjct: 164 VVLGVTNTGKSSFMNSLMEKDKSTISKYPGTT--LKSIKNKIDGTDIKIIDTPGL 216 >gi|19745428|ref|NP_606564.1| GTP-binding protein YqeH [Streptococcus pyogenes MGAS8232] gi|71902919|ref|YP_279722.1| GTP-binding protein YqeH [Streptococcus pyogenes MGAS6180] gi|139474400|ref|YP_001129116.1| GTP-binding protein YqeH [Streptococcus pyogenes str. Manfredo] gi|306827997|ref|ZP_07461264.1| ribosome biogenesis GTPase YqeH [Streptococcus pyogenes ATCC 10782] gi|19747540|gb|AAL97063.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232] gi|71802014|gb|AAX71367.1| GTP-binding protein [Streptococcus pyogenes MGAS6180] gi|134272647|emb|CAM30914.1| GTP-binding protein [Streptococcus pyogenes str. Manfredo] gi|304429916|gb|EFM32958.1| ribosome biogenesis GTPase YqeH [Streptococcus pyogenes ATCC 10782] gi|323126594|gb|ADX23891.1| GTP-binding protein YqeH [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 372 Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 8/67 (11%) Query: 216 IRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270 +RNG + ++G +N GKS+L NA+ + KDV + PGTT D + I LD + Sbjct: 160 LRNGRDVYVVGVTNVGKSTLINAIIQEITGDKDVITTSRFPGTTLDKIEIPLDDGSF--- 216 Query: 271 ISDTAGI 277 I DT GI Sbjct: 217 IFDTPGI 223 >gi|300741536|ref|ZP_07071557.1| GTP-binding protein Era [Rothia dentocariosa M567] gi|311113629|ref|YP_003984851.1| GTP-binding protein Era [Rothia dentocariosa ATCC 17931] gi|300380721|gb|EFJ77283.1| GTP-binding protein Era [Rothia dentocariosa M567] gi|310945123|gb|ADP41417.1| GTP-binding protein Era [Rothia dentocariosa ATCC 17931] Length = 372 Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 1/70 (1%) Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267 +Q E R G+ + ++G NAGKS+L NAL + VAI + P TTR + + + Y Sbjct: 9 AQPAFPEHYRAGF-VSLVGRPNAGKSTLTNALVGQKVAITSSRPQTTRHTIRGIVHRDDY 67 Query: 268 LVKISDTAGI 277 + + DT GI Sbjct: 68 QLILVDTPGI 77 >gi|157165568|ref|YP_001466814.1| GTP-binding protein Era [Campylobacter concisus 13826] gi|189037252|sp|A7ZDF6|ERA_CAMC1 RecName: Full=GTPase Era gi|112801332|gb|EAT98676.1| GTP-binding protein Era [Campylobacter concisus 13826] Length = 289 Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust. Identities = 29/95 (30%), Positives = 55/95 (57%), Gaps = 3/95 (3%) Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-IDLDLEGYLVKISDT 274 +++G+ + I+G +NAGKSS NAL + +AIV+ TR + I ++ E ++ +DT Sbjct: 1 MKSGF-VSIIGRTNAGKSSFLNALLNEKIAIVSHKQNATRRKINGIVMNGEDQII-FTDT 58 Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309 G+ E++ + + I + + + DLI+ L I+ Sbjct: 59 PGLHESNKAINQLLISQAIKSMGDCDLIVFLAPIH 93 >gi|221132207|ref|XP_002155788.1| PREDICTED: similar to predicted protein [Hydra magnipapillata] Length = 321 Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 10/103 (9%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI--- 277 K+ ILG NAGKS+L NA V+ V++I TTR V ++ + +DT GI Sbjct: 22 KVAILGAPNAGKSTLINAAVGSRVSAVSEIKHTTRTVANGIKNIGNCQIIFTDTPGIVSF 81 Query: 278 ----RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316 R D G +R +AD++ ++ ++ SKK +F Sbjct: 82 EEGHRLNMDRAHLRGPRRV---AGSADMLAIITDVASKKTRNF 121 >gi|314933767|ref|ZP_07841132.1| ribosome biogenesis GTPase YqeH [Staphylococcus caprae C87] gi|313653917|gb|EFS17674.1| ribosome biogenesis GTPase YqeH [Staphylococcus caprae C87] Length = 366 Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 8/67 (11%) Query: 216 IRNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270 +RN + ++G +N GKS+L N L +KDV + PGTT D++ I LD ++ Sbjct: 157 VRNNEDVYVVGTTNVGKSTLINKLIEISVGEKDVVTTSRFPGTTLDMIDIPLDETTFMY- 215 Query: 271 ISDTAGI 277 DT GI Sbjct: 216 --DTPGI 220 >gi|303230622|ref|ZP_07317372.1| hydrogenase maturation GTPase HydF [Veillonella atypica ACS-049-V-Sch6] gi|302514677|gb|EFL56669.1| hydrogenase maturation GTPase HydF [Veillonella atypica ACS-049-V-Sch6] Length = 425 Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 1/67 (1%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAG 276 N I G NAGKS+L N L + V++V+++ GTT D ++ ++ L V I+DTAG Sbjct: 8 NRIHIGFFGRCNAGKSTLINMLTDQPVSLVSEVAGTTTDPVSKSMEILPLGPVVITDTAG 67 Query: 277 IRETDDI 283 I +T ++ Sbjct: 68 IDDTSEL 74 >gi|189424844|ref|YP_001952021.1| ferrous iron transporter B [Geobacter lovleyi SZ] gi|189421103|gb|ACD95501.1| ferrous iron transport protein B [Geobacter lovleyi SZ] Length = 713 Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + + G+ NAGKS+L NA+A + V + PG T + D++G +++ D G Sbjct: 9 VAVAGNPNAGKSTLINAIAGSRLH-VGNWPGVTVEKKEALFDVDGRSIRLVDLPGCYSLS 67 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 ++E I R +L E DLI+ Sbjct: 68 PYSQEEIITRDYLVTEKPDLII 89 >gi|320537379|ref|ZP_08037334.1| GTP-binding protein Era [Treponema phagedenis F0421] gi|320145844|gb|EFW37505.1| GTP-binding protein Era [Treponema phagedenis F0421] Length = 295 Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 53/98 (54%), Gaps = 3/98 (3%) Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 +R+G + I+G +AGKS+ N + V+IV+DIP TTR+ + ++ + DT Sbjct: 1 MRSGI-VTIIGRPSAGKSTFLNTACGEKVSIVSDIPQTTRNAVRGIVNTNKGQIVFIDTP 59 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313 G ++ K+ + T ++ AD IL L ++S KE Sbjct: 60 GYHASEKKFNKQLQEITCAKLAEADAILYL--VDSSKE 95 >gi|118444546|ref|YP_877567.1| GTP-binding protein [Clostridium novyi NT] gi|118135002|gb|ABK62046.1| GTP-binding protein [Clostridium novyi NT] Length = 396 Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust. Identities = 28/100 (28%), Positives = 57/100 (57%), Gaps = 2/100 (2%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276 N IV G++N+GKSS+ NA+ +++++V+ + GTT D ++ ++L + V DTAG Sbjct: 8 NRKHIVFYGNTNSGKSSILNAIIGQEISLVSSVEGTTTDPVSKAMELLPFGPVLFIDTAG 67 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316 I + ++ +++T + D + + +IN+ E + Sbjct: 68 INDNSELGSLR-VEKTLKTLNKTDFAIYVMDINNIDENQY 106 >gi|295396781|ref|ZP_06806916.1| ribosome-associated GTPase EngA [Brevibacterium mcbrellneri ATCC 49030] gi|294970365|gb|EFG46305.1| ribosome-associated GTPase EngA [Brevibacterium mcbrellneri ATCC 49030] Length = 503 Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 31/55 (56%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 + I+G N GKS+L N + + A+V D+PG TRD ++ G + + DT G Sbjct: 70 LAIVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYTAHWAGRDITLVDTGG 124 Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust. Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 3/93 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE- 279 ++ ++G N GKSSL N L + +V ++ GTTRD + + L + DTAGIR+ Sbjct: 244 RVALIGRPNVGKSSLLNRLVGSERVMVDNVAGTTRDPVDELVVLGDRQWRFVDTAGIRKR 303 Query: 280 --TDDIVEKEGIKRTFLEVENADLILLLKEINS 310 + RT +E A++ L+L E + Sbjct: 304 ARQSSGADYYAALRTQTALERAEVALVLLEADQ 336 >gi|167749119|ref|ZP_02421246.1| hypothetical protein EUBSIR_00063 [Eubacterium siraeum DSM 15702] gi|167657918|gb|EDS02048.1| hypothetical protein EUBSIR_00063 [Eubacterium siraeum DSM 15702] Length = 419 Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust. Identities = 51/174 (29%), Positives = 79/174 (45%), Gaps = 20/174 (11%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGI--RET 280 I+G++NAGKS+L NAL V + D T D+ + ++L +G + + DT G+ R Sbjct: 210 IVGYTNAGKSTLLNALTGAGV-LAEDKLFATLDLTSRAIELPDGRSLTLVDTVGLIRRLP 268 Query: 281 DDIVEKEGIKRTFLEVENADLILLL-----KEINSKKEISFP-------KNIDFIFIGTK 328 +V E K T E +AD+IL + E K + + I I + K Sbjct: 269 HHLV--EAFKSTLEEAASADIILHVCDASDPEAREKAQTTLSLLSELGCGEIPVITVLNK 326 Query: 329 SDL--YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380 D Y E +IS+ G G +EL+ I L++K ++ IP K L Sbjct: 327 CDKLDYELPPAENTVMISAKNGTGFDELLKAISDNLTDKVSRMEMLIPYDKSGL 380 >gi|291279472|ref|YP_003496307.1| GTP-binding protein Era [Deferribacter desulfuricans SSM1] gi|290754174|dbj|BAI80551.1| GTP-binding protein Era [Deferribacter desulfuricans SSM1] Length = 297 Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust. Identities = 31/109 (28%), Positives = 56/109 (51%), Gaps = 5/109 (4%) Query: 217 RNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273 +N +K + I+G N GKS+L N L + V+I+++ P TTR + E Y + D Sbjct: 3 KNKFKSGFVSIIGRPNVGKSTLLNRLLGEKVSIISNKPNTTRTNIQGIKTGEDYQIIFID 62 Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS--KKEISFPKNI 320 T GI D + + ++ ++ D++ L+ E + KE++F N+ Sbjct: 63 TPGIHNAKDKINRLMVQNALDSLDMVDIVYLMVEPDEFIGKEMNFILNV 111 >gi|291278852|ref|YP_003495687.1| ferrous iron transport protein B [Deferribacter desulfuricans SSM1] gi|290753554|dbj|BAI79931.1| ferrous iron transport protein B [Deferribacter desulfuricans SSM1] Length = 645 Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust. Identities = 45/176 (25%), Positives = 79/176 (44%), Gaps = 26/176 (14%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIR 278 YK++++G+ N GKS+LF L KK A V++ PGTT + ++ + V+ DT G Sbjct: 6 YKVLLVGNPNVGKSALFYNLTKK-YASVSNYPGTTVSIFKGKTNIGPHHEVEFIDTPGFY 64 Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS--FPKNIDFIFIGTKSDLYSTYT 336 + I E+E + + + + D IL + K I+ P FI G + L Sbjct: 65 NFNTITEEEKVTKDIILQNDYDCIL---HVVDAKNIARMLPLTFQFIEAGLPTILVLNMY 121 Query: 337 EEYD---------HL----------ISSFTGEGLEELINKIKSILSNKFKKLPFSI 373 +E + HL ++ +G E L+ +I S++ ++ P +I Sbjct: 122 DELECQGMEINITHLEHDLGIPVVKTAAIKNKGTENLMARILSVVEGRYNFQPINI 177 >gi|242281264|ref|YP_002993393.1| GTP-binding protein Era [Desulfovibrio salexigens DSM 2638] gi|242124158|gb|ACS81854.1| GTP-binding protein Era [Desulfovibrio salexigens DSM 2638] Length = 305 Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 44/84 (52%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G NAGKS+L N + VAIV+ P TTR+ ++ L E V DT GI Sbjct: 10 VALIGPPNAGKSTLMNHYLGQKVAIVSPKPQTTRNRISGILSDENSQVVFLDTPGIHRMR 69 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + + + + NAD I++L Sbjct: 70 GKMNRFLLDSAWEALGNADAIVVL 93 >gi|15669110|ref|NP_247915.1| GTP-binding protein homologue YphC [Methanocaldococcus jannaschii DSM 2661] gi|3024931|sp|Q58330|Y920_METJA RecName: Full=Uncharacterized protein MJ0920 gi|1591593|gb|AAB98924.1| GTP-binding protein homologue (yphC) [Methanocaldococcus jannaschii DSM 2661] Length = 185 Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 54/98 (55%), Gaps = 14/98 (14%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR----------DVLTIDLDLEGYLV 269 +KI I+G NAGKSS+ NAL K V++V+++ GTT+ + I + E + Sbjct: 6 FKIAIIGPENAGKSSIMNALFGKYVSLVSEVGGTTKMPIKRYWGKLKIGRIKEEPEFVNL 65 Query: 270 KISDTAGIRETDD----IVEKEGIKRTFLEVENADLIL 303 D G+ T D I+ + +++TF E+ ++D+I+ Sbjct: 66 VFVDLGGLYTTTDKQSPIMTPKVLEKTFEEINDSDMII 103 >gi|329947103|ref|ZP_08294479.1| GTP-binding protein HflX [Actinomyces sp. oral taxon 170 str. F0386] gi|328526280|gb|EGF53297.1| GTP-binding protein HflX [Actinomyces sp. oral taxon 170 str. F0386] Length = 520 Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust. Identities = 58/226 (25%), Positives = 92/226 (40%), Gaps = 34/226 (15%) Query: 222 IVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 + I G++NAGKSSL N L + + A+ + T R T EG ++DT G Sbjct: 299 VAIAGYTNAGKSSLMNRLTEAGIMVEDALFATLDPTVRRAETS----EGRTYTLTDTVGF 354 Query: 278 RETDDIVEKEGIKRTFLEVENADLIL---------LLKEINSKKEI--SFPKNIDF--IF 324 E + T EV ADL+L L ++ + + + P +D + Sbjct: 355 VRNLPHELIEAFRSTLEEVAGADLVLHVVDAAHPDPLSQVAAVRTVLSEIPDALDVPELI 414 Query: 325 IGTKSDLYSTYTEEY-------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377 + K+DL T +S+ TGEG+EEL +I+ +L + + +P + Sbjct: 415 VLNKTDLADAVTLAALRTRLPGSVAVSARTGEGIEELRTRIERMLPHPQVSIDVVVPYSR 474 Query: 378 RHL---YHLS---QTVRYLEMASLNEKDCGLDIIAENLRLASVSLG 417 L H TV Y+E + G + AE A S+G Sbjct: 475 GDLVSRVHAEGEIDTVDYVETGTRVVARVGSALAAEIEDAAGASVG 520 >gi|291556831|emb|CBL33948.1| GTP-binding protein HflX [Eubacterium siraeum V10Sc8a] Length = 419 Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust. Identities = 51/174 (29%), Positives = 79/174 (45%), Gaps = 20/174 (11%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGI--RET 280 I+G++NAGKS+L NAL V + D T D+ + ++L +G + + DT G+ R Sbjct: 210 IVGYTNAGKSTLLNALTGAGV-LAEDKLFATLDLTSRAIELPDGRSLTLVDTVGLIRRLP 268 Query: 281 DDIVEKEGIKRTFLEVENADLILLL-----KEINSKKEISFP-------KNIDFIFIGTK 328 +V E K T E +AD+IL + E K + + I I + K Sbjct: 269 HHLV--EAFKSTLEEAASADIILHVCDASDPEAREKAQTTLSLLSELGCGEIPVITVLNK 326 Query: 329 SDL--YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380 D Y E +IS+ G G +EL+ I L++K ++ IP K L Sbjct: 327 CDKLDYELPPAENTVMISAKNGTGFDELLKAISDNLTDKVSRMEMLIPYDKSGL 380 >gi|259416757|ref|ZP_05740677.1| GTP-binding protein HflX [Silicibacter sp. TrichCH4B] gi|259348196|gb|EEW59973.1| GTP-binding protein HflX [Silicibacter sp. TrichCH4B] Length = 423 Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust. Identities = 55/191 (28%), Positives = 88/191 (46%), Gaps = 30/191 (15%) Query: 220 YKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGI 277 Y IV L G++NAGKS+LFN L DV + D+ T D ++L +G V +SDT G Sbjct: 202 YPIVALVGYTNAGKSTLFNRLTGADV-MAKDMLFATLDPTMRRVELPDGPEVILSDTVGF 260 Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF--IGTKSD--LYS 333 + T EV AD+IL +++I+ + ++++ I +G D L Sbjct: 261 ISDLPTELVASFRATLEEVLAADVILHVRDISHSDTENQAEDVEQILNSLGVDEDRALIE 320 Query: 334 TYT-------EEYD------------HLISSFTGEGLEELIN----KIKSILSNKFKKLP 370 + E+ D + IS+ TGEGL EL+N K++ + ++ L Sbjct: 321 VWNKIDQLSEEDADACRQRAERSEELYAISAITGEGLPELLNDIALKLQGVRHHEVLHLD 380 Query: 371 FSIPSHKRHLY 381 FS + L+ Sbjct: 381 FSQGKQRAWLF 391 >gi|238924233|ref|YP_002937749.1| GTP-binding protein Era [Eubacterium rectale ATCC 33656] gi|238875908|gb|ACR75615.1| GTP-binding protein Era [Eubacterium rectale ATCC 33656] Length = 303 Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust. Identities = 45/176 (25%), Positives = 76/176 (43%), Gaps = 37/176 (21%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRET 280 + I+G N GKS+L N L + +AI ++ P TTR+ + T+ D+E + DT GI + Sbjct: 10 VTIIGRPNVGKSTLMNRLIGQKIAITSNKPQTTRNRIQTVYTDMEKGQIVFLDTPGIHKA 69 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE------------INSKKEISFPKNIDFIFIGTK 328 + + + + + D++L L E I K+++ P I I K Sbjct: 70 KNKLGEYMVNVAEKTLNEVDVVLWLVEPTNFIGAGEQHIIEQLKKVNTP----VILIINK 125 Query: 329 SDLY---------STYTEEYDHL----ISSFTGEGLEELINKIKSILSNKFKKLPF 371 D TY + +D S+ G+ +++IN I FK LP+ Sbjct: 126 VDTVEKEKVLEYIDTYRKVFDFAEIIPTSALRGQNTDDVINSI-------FKYLPY 174 >gi|255556681|ref|XP_002519374.1| GTP-binding protein enga, putative [Ricinus communis] gi|223541441|gb|EEF42991.1| GTP-binding protein enga, putative [Ricinus communis] Length = 635 Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust. Identities = 24/76 (31%), Positives = 41/76 (53%) Query: 201 NDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260 ND + + S ++ E + ++ I+G N GKS+L N L +++ +V G TRD + Sbjct: 315 NDATHYDSSSEVEEDSKLPMQLAIVGRPNVGKSTLLNTLLQEERVLVGPEVGLTRDSIRS 374 Query: 261 DLDLEGYLVKISDTAG 276 D +G + + DTAG Sbjct: 375 QFDFQGRTIYLVDTAG 390 Score = 37.0 bits (84), Expect = 7.1, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 2/58 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPG--TTRDVLTIDLDLEGYLVKISDTAGI 277 ++I+G N GKS+LFN L ++ A+V + P TRD+ L ++ D+AG+ Sbjct: 129 VIIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFRVLDSAGL 186 >gi|227549102|ref|ZP_03979151.1| HflX family GTP-binding protein [Corynebacterium lipophiloflavum DSM 44291] gi|227078831|gb|EEI16794.1| HflX family GTP-binding protein [Corynebacterium lipophiloflavum DSM 44291] Length = 496 Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust. Identities = 53/182 (29%), Positives = 80/182 (43%), Gaps = 29/182 (15%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRE 279 KI I G++NAGKSSL NA+ V +V D T D T L +G V ++DT G Sbjct: 270 KIAIAGYTNAGKSSLINAMTNAGV-LVEDALFATLDPSTRKAQLADGRNVVLTDTVGFVR 328 Query: 280 TDDIVEKEGIKRTFLEVENADLIL---------LLKEINSKKEI----------SFPKNI 320 E K T EV ADL+L LK+I + ++ S P I Sbjct: 329 HLPTQLVEAFKSTLEEVTGADLMLHVVDGSDAFPLKQIEAVNKVLSDVTRESGESIPPEI 388 Query: 321 DFIFIGTKSD--LYSTYTEEYDH------LISSFTGEGLEELINKIKSILSNKFKKLPFS 372 + ++D + + +D+ +S+ TGEG+ EL KI+ L++ + Sbjct: 389 VVVNKIDQADPVVLAELRHTFDNTGHDVVFVSAHTGEGIAELEGKIEMHLNSVEAHVQML 448 Query: 373 IP 374 +P Sbjct: 449 VP 450 >gi|84501097|ref|ZP_00999332.1| GTP-binding protein HflX [Oceanicola batsensis HTCC2597] gi|84391164|gb|EAQ03582.1| GTP-binding protein HflX [Oceanicola batsensis HTCC2597] Length = 424 Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 75/172 (43%), Gaps = 35/172 (20%) Query: 222 IVILGHSNAGKSSLFNALA-----KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 + ++G++NAGKS+LFN L KD+ T P R + L G V +SDT G Sbjct: 206 VALVGYTNAGKSTLFNRLTGAEVLAKDMLFATLDPTMRR----VRLPNNGPEVILSDTVG 261 Query: 277 IRETDDIVEK--EGIKRTFLEVENADLILLLKEINSKK-------------EISFPKNID 321 D+ + + T EV ADLIL +++I+ + ++ P+ + Sbjct: 262 F--ISDLPTQLVAAFRATLEEVLEADLILHIRDISHPEAEEQKADVEDILSDLGLPEEVP 319 Query: 322 FIFIGTKSD---------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364 + + K D L + +IS+ TG GL+ L++ ++ L Sbjct: 320 VLEVWNKVDRLPPEDAGALARRAERDGTFVISAVTGAGLDPLLDAVERTLDQ 371 >gi|227357012|ref|ZP_03841383.1| ATP/GTP-binding protein [Proteus mirabilis ATCC 29906] gi|227162815|gb|EEI47775.1| ATP/GTP-binding protein [Proteus mirabilis ATCC 29906] Length = 290 Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust. Identities = 21/71 (29%), Positives = 37/71 (52%) Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269 +L +I I ++G + AGKSSL NAL + ++ V+D+ G TR + + + + Sbjct: 24 NQLNYLINYSPTIGLMGKTGAGKSSLINALFQSSLSPVSDVSGCTRQAQRFSMTMNNHTL 83 Query: 270 KISDTAGIRET 280 D G+ E+ Sbjct: 84 TFVDLPGVGES 94 >gi|56696948|ref|YP_167310.1| GTP-binding protein HflX [Ruegeria pomeroyi DSS-3] gi|56678685|gb|AAV95351.1| GTP-binding protein HflX [Ruegeria pomeroyi DSS-3] Length = 424 Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust. Identities = 55/199 (27%), Positives = 80/199 (40%), Gaps = 36/199 (18%) Query: 220 YKIVIL-GHSNAGKSSLFNALA-----KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273 Y IV L G++NAGKS+LFN L KD+ T P R VL +G V +SD Sbjct: 203 YPIVALVGYTNAGKSTLFNRLTGAEVMAKDMLFATLDPTMRRVVLP-----DGPEVILSD 257 Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF--------- 324 T G + T EV ADLI+ +++I+ ++++ I Sbjct: 258 TVGFISDLPTELVAAFRATLEEVLAADLIVHVRDIHHAATEEQARDVETILASLGVDEGR 317 Query: 325 ----IGTKSDLY----------STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKK-- 368 + K DL T + +S+ TGEGLE L+ I L+ + Sbjct: 318 PKFEVWNKVDLLDPDKRAALRERTARDPSLFAVSAVTGEGLESLLTAIAEALAETRSEAV 377 Query: 369 LPFSIPSHKRHLYHLSQTV 387 L KR + +Q V Sbjct: 378 LTLGFADGKRRAWLFAQDV 396 >gi|322411127|gb|EFY02035.1| GTP-binding protein YqeH [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 372 Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 8/67 (11%) Query: 216 IRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270 +RNG + ++G +N GKS+L NA+ + KDV + PGTT D + I LD + Sbjct: 160 LRNGRDVYVVGVTNVGKSTLINAIIQEITGDKDVITTSRFPGTTLDKIEIPLDDGSF--- 216 Query: 271 ISDTAGI 277 I DT GI Sbjct: 217 IFDTPGI 223 >gi|312863524|ref|ZP_07723762.1| ribosome biogenesis GTPase YqeH [Streptococcus vestibularis F0396] gi|311101060|gb|EFQ59265.1| ribosome biogenesis GTPase YqeH [Streptococcus vestibularis F0396] Length = 372 Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 8/69 (11%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268 E +R G + ++G +N GKS+L NA+ K KD+ + PGTT D + I LD Y Sbjct: 158 EKLRKGRDVYVVGVTNVGKSTLINAIIKEITGDKDIITTSRFPGTTLDKIEIPLDDGTY- 216 Query: 269 VKISDTAGI 277 I DT GI Sbjct: 217 --IFDTPGI 223 >gi|224476705|ref|YP_002634311.1| GTP-binding protein YqeH [Staphylococcus carnosus subsp. carnosus TM300] gi|222421312|emb|CAL28126.1| conserved hypothetical protein [Staphylococcus carnosus subsp. carnosus TM300] Length = 366 Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust. Identities = 39/148 (26%), Positives = 67/148 (45%), Gaps = 19/148 (12%) Query: 217 RNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 RN + I+G +N GKS+L N L +KDV + PGTT D++ I LD ++ Sbjct: 158 RNHEDVYIVGTTNVGKSTLINKLIEHSVGEKDVVTTSRFPGTTLDMIDIPLDENTFMF-- 215 Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP--KNIDFIFIGTKS 329 DT GI + + K + N ++ + ++N + + F ID++ G + Sbjct: 216 -DTPGIIQEHQMTHYVSDKELKQIMPNKEIKQRVYQLNENQTLFFGGLARIDYVSGGKRP 274 Query: 330 ---------DLYSTYTEEYDHLISSFTG 348 +++ T TE+ D L + G Sbjct: 275 LVCYFSNNLNIHRTKTEKADTLWQTQLG 302 >gi|189500921|ref|YP_001960391.1| GTP-binding protein Era [Chlorobium phaeobacteroides BS1] gi|189496362|gb|ACE04910.1| GTP-binding protein Era [Chlorobium phaeobacteroides BS1] Length = 306 Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust. Identities = 48/196 (24%), Positives = 80/196 (40%), Gaps = 27/196 (13%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 GY + I+G NAGKS+L N L ++IVT P TTR +T + + DT GI Sbjct: 10 GY-VAIIGPPNAGKSTLLNRLLNHKLSIVTPKPQTTRKKITGIYHSDRCQILFLDTPGIM 68 Query: 279 ETDDIVEKEGIKRTFLEVENADLI-------------------LLLKEI---NSKKEISF 316 + + + + T ++ AD+I LL +E K I+ Sbjct: 69 KPMQELHQSMLTATRSTLKEADVIITMIPASKKNGLFDQDFTELLFREWLTNTGKPVIAA 128 Query: 317 PKNIDFIFIGTKSDLYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFS 372 DF+ G + + E ++ +S+ G G ++LI + +L P Sbjct: 129 LNKSDFLNAGEQEEALRIIKERWNPEKALAVSALKGSGTDDLIEALIPLLPASAPLYPED 188 Query: 373 IPSHKRHLYHLSQTVR 388 I S + +S+ +R Sbjct: 189 ILSTAPERFFVSEIIR 204 >gi|16331223|ref|NP_441951.1| GTP-binding protein Era [Synechocystis sp. PCC 6803] gi|3334177|sp|Q55526|ERA_SYNY3 RecName: Full=GTPase Era gi|1001399|dbj|BAA10021.1| GTP-binding protein Era [Synechocystis sp. PCC 6803] Length = 315 Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust. Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 3/99 (3%) Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266 I Q G R+G+ + I+G N GKS+L N L + +AI + + TTR+ L + Sbjct: 13 IPQAPAG--FRSGF-VAIVGRPNVGKSTLMNQLVGQKIAITSPVAQTTRNRLQGIITTPS 69 Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 + + DT GI + + + +K + + DL++ L Sbjct: 70 SQIILLDTPGIHKPHHELGRVLVKNAIQAIHSVDLVVFL 108 >gi|315297595|gb|EFU56872.1| conserved hypothetical protein [Escherichia coli MS 16-3] Length = 246 Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 3/85 (3%) Query: 228 SNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI-VEK 286 S AGKSSL NAL + ++ V+D+ TR+V L+ G+ + I+D G+ E+ D E Sbjct: 1 SGAGKSSLCNALFQGEITPVSDVHAGTREVQRFRLNGHGHSMVITDLPGVGESRDRDAEY 60 Query: 287 EGIKRTFLEVENADLILLLKEINSK 311 E + R L DL+L L + + + Sbjct: 61 EALYRDIL--PELDLVLWLIKADDR 83 >gi|170288692|ref|YP_001738930.1| ferrous iron transport protein B [Thermotoga sp. RQ2] gi|170176195|gb|ACB09247.1| ferrous iron transport protein B [Thermotoga sp. RQ2] Length = 669 Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust. Identities = 57/167 (34%), Positives = 70/167 (41%), Gaps = 27/167 (16%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273 EI + K+ + G N GK+SLFNAL V + PG T + +GY + + D Sbjct: 11 EISQKIVKVALAGCPNVGKTSLFNALTGTK-QYVANWPGVTVEKKEGVFTYKGYTINLID 69 Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLIL-------------LLKEI--NSKKEISFPK 318 G E I R +L +ADL++ LL EI KK I Sbjct: 70 LPGTYSLGYSSIDEKIARDYLLKGDADLVIVVADSVNPEQSLYLLLEILEMEKKVILAMT 129 Query: 319 NIDFI-FIGTKSDLYSTYTEEYDHL------ISSFTGEGLEELINKI 358 ID IG K D Y E HL SS TGEGLEEL KI Sbjct: 130 AIDEAKKIGIKIDRY----ELQKHLGIPVVFTSSVTGEGLEELREKI 172 >gi|256375573|ref|YP_003099233.1| GTP-binding proten HflX [Actinosynnema mirum DSM 43827] gi|255919876|gb|ACU35387.1| GTP-binding proten HflX [Actinosynnema mirum DSM 43827] Length = 480 Score = 43.9 bits (102), Expect = 0.045, Method: Compositional matrix adjust. Identities = 54/203 (26%), Positives = 84/203 (41%), Gaps = 48/203 (23%) Query: 199 LKNDISSHISQGKLGEIIRNGY------KIVILGHSNAGKSSLFNALAKKDV----AIVT 248 L+ +I+S G + E R+G + I G++NAGKSSL NAL V A+ Sbjct: 230 LRREIAS---MGVIRETKRSGRVANAVPSVAIAGYTNAGKSSLLNALTSAGVLVQDALFA 286 Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAG-IRETDDIVEKEGIKRTFLEVENADLIL---- 303 + TTR T D G ++DT G +R + E + T EV +ADL++ Sbjct: 287 TLDTTTRRTSTPD----GLPYTLTDTVGFVRHLPHQL-VEAFRSTLEEVADADLLIHVVD 341 Query: 304 ---------------LLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEY-------DH 341 ++ EI K+E P + + K D + Sbjct: 342 GSDSMPEKQVAAVREVIGEIVEKREEPMPPE---LLVVNKVDAVDELVQARLRNLFPGSQ 398 Query: 342 LISSFTGEGLEELINKIKSILSN 364 L+S+ +GEG+EEL I ++ Sbjct: 399 LVSAHSGEGVEELRRVIAGLIPR 421 >gi|306821157|ref|ZP_07454773.1| GTP-binding protein [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550850|gb|EFM38825.1| GTP-binding protein [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 399 Score = 43.9 bits (102), Expect = 0.046, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 82/167 (49%), Gaps = 24/167 (14%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280 I G +N GKSSL N + ++++IV++I GTT D + +++ G I DTAG + Sbjct: 14 IAFFGRTNVGKSSLINKIVNQEISIVSEIRGTTTDPVQKAMEIHGIGATLIIDTAGFDDN 73 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS-----KKEISF-----PKNIDFIFIGTKSD 330 + EK +++T + D+ +++ + KE+S+ KNI ++ + K D Sbjct: 74 SKLGEKR-MEKTSHILNKTDIAVIVTTPDDIISDFSKELSWIEKIKEKNIPYLIVINKID 132 Query: 331 L----------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFK 367 L + T + LIS G+E+LI+ ++ I KFK Sbjct: 133 LSKDMESLKKRVTELTSKEVILISVKENIGIEDLISSLEIIC--KFK 177 >gi|217077570|ref|YP_002335288.1| small GTP-binding protein domain protein [Thermosipho africanus TCF52B] gi|217037425|gb|ACJ75947.1| small GTP-binding protein domain protein [Thermosipho africanus TCF52B] Length = 399 Score = 43.9 bits (102), Expect = 0.046, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 3/85 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280 I I G N GKSS NAL +DV+IV+++ GTT D + ++L V + DT G+ + Sbjct: 11 IAITGRRNVGKSSFMNALIGQDVSIVSNVAGTTTDPVFKSMELSPIGPVTLIDTPGLDDI 70 Query: 281 DDIVEK--EGIKRTFLEVENADLIL 303 ++ +K E K+T + LI+ Sbjct: 71 GELGQKRIEKAKKTLYRADCGILIV 95 >gi|110597803|ref|ZP_01386086.1| Small GTP-binding protein domain:GTP-binding protein Era [Chlorobium ferrooxidans DSM 13031] gi|110340528|gb|EAT59011.1| Small GTP-binding protein domain:GTP-binding protein Era [Chlorobium ferrooxidans DSM 13031] Length = 305 Score = 43.9 bits (102), Expect = 0.046, Method: Compositional matrix adjust. Identities = 51/194 (26%), Positives = 81/194 (41%), Gaps = 30/194 (15%) Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282 +I+G NAGKS+L N L ++IVT P TTR +T + + DT GI + Sbjct: 12 IIIGPPNAGKSTLLNELLDYKLSIVTPKPQTTRKKITGIYHNDKCQIIFLDTPGIMKPQQ 71 Query: 283 IVEKE--GIKRTFLEVENADLILLLKEINSKKEI-----------SF--PKNIDFIFIGT 327 + + GI R L ++AD+++ L + KKE S+ P I + Sbjct: 72 KLHESMLGIIRETL--KDADIVIALLPYSGKKEFFDREFAEELFSSWLKPAGKKIIAVLN 129 Query: 328 KSDLYS-------------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374 KSDL + T+ +S+ G L LI+ I+ L + P Sbjct: 130 KSDLVTEERQREAEAFVRKTWNPAAVLSVSALKGSNLPALIDTIQPYLPLNYPLYPEDTL 189 Query: 375 SHKRHLYHLSQTVR 388 S + +S+ +R Sbjct: 190 STAPERFFVSEIIR 203 >gi|95930678|ref|ZP_01313412.1| GTP-binding protein Era [Desulfuromonas acetoxidans DSM 684] gi|95133330|gb|EAT14995.1| GTP-binding protein Era [Desulfuromonas acetoxidans DSM 684] Length = 303 Score = 43.9 bits (102), Expect = 0.046, Method: Compositional matrix adjust. Identities = 37/167 (22%), Positives = 72/167 (43%), Gaps = 22/167 (13%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R+G+ + I+G N GKS+L N + + +AI + P TTR+ + + V DT G Sbjct: 12 RSGF-VSIVGRPNVGKSTLLNQILGQKIAITANKPQTTRNRILGIHSEDNAQVLFLDTPG 70 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTK 328 I + + + + + D+++ L E + ++ +I + + K Sbjct: 71 IHKATGKLNQYMVDQALSACRGVDVVVFLVEATDRVGGGDDFILDVLAQSDIPVVLVINK 130 Query: 329 SDLY---------STYTEEYDH----LISSFTGEGLEELINKIKSIL 362 DL + Y E +D +S+ G G+E L+ ++ +L Sbjct: 131 VDLVEKDKLLPLIAQYAERFDFKEIIPLSALNGSGVERLVASVRDML 177 >gi|332527859|ref|ZP_08403896.1| GTP-binding proten HflX [Rubrivivax benzoatilyticus JA2] gi|332112436|gb|EGJ12229.1| GTP-binding proten HflX [Rubrivivax benzoatilyticus JA2] Length = 371 Score = 43.9 bits (102), Expect = 0.046, Method: Compositional matrix adjust. Identities = 36/92 (39%), Positives = 49/92 (53%), Gaps = 9/92 (9%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDT 274 R +++ ++G++NAGKS+LFNAL K D T D T L L G V +SDT Sbjct: 186 RGTFRVSLVGYTNAGKSTLFNALVKAKT-YAADQLFATLDTTTRSLWLGEAGMSVSLSDT 244 Query: 275 AG-IRETDDIVEK--EGIKRTFLEVENADLIL 303 G IR D+ K E + T E +ADL+L Sbjct: 245 VGFIR---DLPHKLVEAFEATLREAADADLLL 273 >gi|68076099|ref|XP_679969.1| GTP-binding protein [Plasmodium berghei strain ANKA] gi|56500827|emb|CAH99774.1| GTP-binding protein, putative [Plasmodium berghei] Length = 264 Score = 43.9 bits (102), Expect = 0.046, Method: Compositional matrix adjust. Identities = 52/167 (31%), Positives = 73/167 (43%), Gaps = 30/167 (17%) Query: 221 KIVILGHSNAGKSSLFNALAK-KDVAIVTDIPGTTRDVLTIDL-------DLEGY-LVKI 271 +I I G SN GKSSL NAL ++VA + PG TR + +L DL GY K+ Sbjct: 61 QIGIFGRSNVGKSSLINALMNYREVAQASKTPGRTRHLFIYNLLNHISVVDLPGYGFAKV 120 Query: 272 S----DTAGIRETDDIVEKEGIKRTFLEVENADL------ILLLKEINSKKEISFPKNID 321 S D I + + + + +KR +E +L +LL ++ KNI Sbjct: 121 SKNLRDNWSILIEEYLNKAKNLKRALCLIECTELFTPYDYVLL--------DMLIMKNIP 172 Query: 322 FIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKK 368 F I TK D EE H + +E K+K+ NK KK Sbjct: 173 FQIIVTKID--KLKAEELHHAMVKIIS-IIENYKKKVKAFNENKHKK 216 >gi|322436559|ref|YP_004218771.1| GTP-binding protein Era [Acidobacterium sp. MP5ACTX9] gi|321164286|gb|ADW69991.1| GTP-binding protein Era [Acidobacterium sp. MP5ACTX9] Length = 352 Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 60/115 (52%), Gaps = 17/115 (14%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD----VLTID---------LD 263 R+G+ + I+G NAGKS+L NAL + +AIVT P TTR VL + ++ Sbjct: 4 RSGF-VSIIGRPNAGKSTLLNALLGQKLAIVTHKPQTTRTRIHGVLEVPAKKKTKVGAIE 62 Query: 264 LEGY---LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 G+ + + DT GI + D ++K ++ +E+ + +L + ++ + ++ Sbjct: 63 TAGHPAAQIVLVDTPGIHKPDTQLDKRMMQEVHDALESRNAVLFIVDVTHRLPVA 117 >gi|212638693|ref|YP_002315213.1| GTPase [Anoxybacillus flavithermus WK1] gi|212560173|gb|ACJ33228.1| GTPase [Anoxybacillus flavithermus WK1] Length = 306 Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust. Identities = 45/190 (23%), Positives = 80/190 (42%), Gaps = 34/190 (17%) Query: 215 IIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 +++ GYK + I+G N GKS+ N + + +AI++D P TTR+ + + + Sbjct: 5 MVQEGYKSGFVAIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKIQGVYTTDDAQIIF 64 Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------------INSKKEISFPKN 319 DT GI + + +K ++ DLIL + I K++ P Sbjct: 65 IDTPGIHKPKHKLGDFMVKVAQSALQEVDLILFMVNAVEGFGRGDEFIIERLKQVQTPV- 123 Query: 320 IDFIFIGTKSDLYS----TYTEEYDHL--------ISSFTGEGLEELINKIKSILSNKFK 367 F+ I +++ E+Y L IS+ G +E L+ +IK+ L Sbjct: 124 --FLVINKIDEVHPDDLLPLIEQYRSLHSFAEVIPISALQGNNVETLLQQIKNYLPEG-- 179 Query: 368 KLPFSIPSHK 377 P P+H+ Sbjct: 180 --PQYYPAHQ 187 >gi|58584268|ref|YP_197841.1| GTP-binding protein Era [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58418584|gb|AAW70599.1| GTPase [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 294 Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust. Identities = 35/103 (33%), Positives = 57/103 (55%), Gaps = 7/103 (6%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTIDLDLEGYLVKISDTAGIRET 280 + I G NAGKS+L N++ K +AIVT TTR + I + E ++ +D+ GI Sbjct: 9 VTIAGLPNAGKSTLINSITGKKIAIVTPKVQTTRTQIRGIAIYNETQII-FTDSPGIFSA 67 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI 323 + +EK +K + ++ D+ILLL + + S+ KNI+ I Sbjct: 68 ETKLEKALVKSAWSAIKGDDVILLLIDAS-----SYLKNIERI 105 >gi|322516195|ref|ZP_08069128.1| GTP-binding protein [Streptococcus vestibularis ATCC 49124] gi|322125371|gb|EFX96726.1| GTP-binding protein [Streptococcus vestibularis ATCC 49124] Length = 372 Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 8/69 (11%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268 E +R G + ++G +N GKS+L NA+ K KD+ + PGTT D + I LD Y Sbjct: 158 EKLRKGRDVYVVGVTNVGKSTLINAIIKEITGDKDIITTSRFPGTTLDKIEIPLDDGTY- 216 Query: 269 VKISDTAGI 277 I DT GI Sbjct: 217 --IFDTPGI 223 >gi|228475982|ref|ZP_04060690.1| ribosome biogenesis GTPase YqeH [Staphylococcus hominis SK119] gi|314936283|ref|ZP_07843630.1| ribosome biogenesis GTPase YqeH [Staphylococcus hominis subsp. hominis C80] gi|228269805|gb|EEK11285.1| ribosome biogenesis GTPase YqeH [Staphylococcus hominis SK119] gi|313654902|gb|EFS18647.1| ribosome biogenesis GTPase YqeH [Staphylococcus hominis subsp. hominis C80] Length = 366 Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust. Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 12/80 (15%) Query: 217 RNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 RN + I+G +N GKS+L N L +KDV + PGTT D++ I LD ++ Sbjct: 158 RNHQDVYIVGTTNVGKSTLINKLIEQSVGEKDVVTTSRFPGTTLDMIDIPLDENTFMY-- 215 Query: 272 SDTAGI----RETDDIVEKE 287 DT GI + T + EKE Sbjct: 216 -DTPGIIQAHQMTHYVTEKE 234 >gi|313202782|ref|YP_004041439.1| GTP-binding protein era [Paludibacter propionicigenes WB4] gi|312442098|gb|ADQ78454.1| GTP-binding protein Era [Paludibacter propionicigenes WB4] Length = 293 Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust. Identities = 28/100 (28%), Positives = 58/100 (58%), Gaps = 4/100 (4%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 I+G+ N GKS+L NAL + ++I+T TTR + ++ + + + SDT G+ + + Sbjct: 9 IVGNPNVGKSTLMNALVGERISIITSKAQTTRHRILGIVNGDDFQIVYSDTPGVLKPNYR 68 Query: 284 VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI 323 +++ +K + + +AD++L + ++ S+ KN DF+ Sbjct: 69 LQESMLKFSRSALSDADVLLYVTDVFD----SYEKNEDFV 104 >gi|295092645|emb|CBK78752.1| iron-only hydrogenase maturation protein HydF [Clostridium cf. saccharolyticum K10] Length = 432 Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust. Identities = 48/174 (27%), Positives = 73/174 (41%), Gaps = 33/174 (18%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL----------------TIDLDLE 265 I G NAGKSSL NA +D+A+V+D+ GTT D + T +D E Sbjct: 14 ISFFGCRNAGKSSLLNAFTGQDLAVVSDVKGTTTDPVKKSMELLPLGPAVIIDTPGIDDE 73 Query: 266 GYL--VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI 323 G L ++ T I DI +T + E+ +L L +E K + ++ Sbjct: 74 GSLGGRRVRKTRQILNMTDIAVLVADSQTGIRKEDRELAALFQE----------KEVPYV 123 Query: 324 FIGTKSDLYSTYTEEYDHLISSFTG--EGLEE---LINKIKSILSNKFKKLPFS 372 K DL + + ++ TG EG+ E N+ ++LS LP S Sbjct: 124 VAFNKCDLTENHIPDIYKEETNKTGAKEGVPEDRGTENREAAVLSGAAAVLPVS 177 >gi|271963792|ref|YP_003337988.1| GTP-binding family protein [Streptosporangium roseum DSM 43021] gi|270506967|gb|ACZ85245.1| GTP-binding family protein ; K03665 GTP-binding protein HflX [Streptosporangium roseum DSM 43021] Length = 494 Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust. Identities = 45/176 (25%), Positives = 79/176 (44%), Gaps = 20/176 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I G++NAGKSSL N L V + + T + EG L ++DT G Sbjct: 272 VAIAGYTNAGKSSLLNRLTGAGVLVEDSLFATLDPTVRRAHTPEGRLFTLADTVGFVRHL 331 Query: 282 DIVEKEGIKRTFLEVENADLILLL---------KEINSKKE----ISFPKNIDFIFIGTK 328 E + T EV +ADLIL + ++ + +E I ++I I + K Sbjct: 332 PHQLVEAFRSTLEEVGDADLILHVVDGSHPDPESQLAAVREVVADIEGARDIPEIVVINK 391 Query: 329 SDLYS-------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377 +D+ T E++ ++S+ TG G++EL+ I+ L +++ +P + Sbjct: 392 ADVADPVVLAQLTAREKHTVVVSARTGAGIDELLAIIERELPRFDQEVRLLVPYQR 447 >gi|118580147|ref|YP_901397.1| GTP-binding protein EngA [Pelobacter propionicus DSM 2379] gi|171704446|sp|A1APR9|DER_PELPD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|118502857|gb|ABK99339.1| small GTP-binding protein [Pelobacter propionicus DSM 2379] Length = 448 Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 1/90 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T 280 + ++G N GKS+LFN L AIV D PG TRD ++ + DT G T Sbjct: 5 VALVGRPNVGKSTLFNRLLGHRRAIVDDTPGVTRDRNYALINRFEKPFILIDTGGFEPVT 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINS 310 +D + ++ +++ L +E AD+I+ + + S Sbjct: 65 EDRLLQQMREQSSLAMEEADVIIFMMDARS 94 Score = 43.9 bits (102), Expect = 0.059, Method: Compositional matrix adjust. Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 3/88 (3%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-- 278 +I ++G N GKSSL N L + + GTTRD + + DTAGIR Sbjct: 177 RIAVVGRPNVGKSSLVNRLLGFERVVANPTAGTTRDSVDTLFMCNKKPYLLIDTAGIRRK 236 Query: 279 -ETDDIVEKEGIKRTFLEVENADLILLL 305 +T + +EK + +E AD++L++ Sbjct: 237 GKTTEKLEKYSVVDALRSIERADVVLVV 264 >gi|325962851|ref|YP_004240757.1| small GTP-binding protein domain/GTP-binding conserved hypothetical protein TIGR00650 [Arthrobacter phenanthrenivorans Sphe3] gi|323468938|gb|ADX72623.1| small GTP-binding protein domain/GTP-binding conserved hypothetical protein TIGR00650 [Arthrobacter phenanthrenivorans Sphe3] Length = 527 Score = 43.9 bits (102), Expect = 0.048, Method: Compositional matrix adjust. Identities = 48/183 (26%), Positives = 74/183 (40%), Gaps = 41/183 (22%) Query: 222 IVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 + I G++NAGKSSL N L V A+ + T R T D G ++DT G Sbjct: 308 VAIAGYTNAGKSSLLNRLTDAGVLVENALFATLDPTVRKAETAD----GLGYTLADTVGF 363 Query: 278 RETDDIVEKEGIKRTFLEVENADLIL-------------------LLKEINSKKEISFPK 318 + E + T EV ++DLIL + E++++K Sbjct: 364 VRSLPTQLVEAFRSTLEEVADSDLILHVVDASHPDPEGQIAAVRKVFSEVDARK------ 417 Query: 319 NIDFIFIGTKSDLYSTYT------EEYDH-LISSFTGEGLEELINKIKSILSNKFKKLPF 371 + I + K+D + E H ++S+ TGEG+ EL+ I + KL Sbjct: 418 -VPEIIVLNKADAADPFVVERLKQREPRHVVVSARTGEGIPELLRAISEAIPRPSVKLEL 476 Query: 372 SIP 374 IP Sbjct: 477 LIP 479 >gi|317493863|ref|ZP_07952280.1| small GTP-binding protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918190|gb|EFV39532.1| small GTP-binding protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 287 Score = 43.9 bits (102), Expect = 0.048, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 34/60 (56%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G + AGKSSL NAL D++ V+D+ TR L L L + I D G+ E++ Sbjct: 39 IGIMGKTGAGKSSLCNALFAGDISPVSDVAACTRKPLQFRLQLGKRFMTIIDLPGVGESE 98 >gi|168185421|ref|ZP_02620056.1| GTP-binding protein [Clostridium botulinum C str. Eklund] gi|169296536|gb|EDS78669.1| GTP-binding protein [Clostridium botulinum C str. Eklund] Length = 396 Score = 43.9 bits (102), Expect = 0.048, Method: Compositional matrix adjust. Identities = 28/97 (28%), Positives = 56/97 (57%), Gaps = 2/97 (2%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276 N IV G++N+GKSS+ NA+ +++++V+ + GTT D ++ ++L + V DTAG Sbjct: 8 NRKHIVFYGNTNSGKSSILNAIIGQEISLVSSVEGTTTDPVSKAMELLPFGPVLFIDTAG 67 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313 I + ++ +++T + D + + +IN+ E Sbjct: 68 INDNSELGSLR-VEKTLKTLNKTDFAIYVMDINNIDE 103 >gi|330752120|emb|CBL87081.1| GTP-binding protein era homolog [uncultured Flavobacteria bacterium] Length = 301 Score = 43.9 bits (102), Expect = 0.048, Method: Compositional matrix adjust. Identities = 28/93 (30%), Positives = 53/93 (56%), Gaps = 4/93 (4%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G+ N GKS+L NA + ++I+T TTR + ++ + Y + +SDT G+ Sbjct: 16 VTIVGNPNVGKSTLMNAWVGERLSIITSKAQTTRHRILGIINGDDYQMVLSDTPGV--IK 73 Query: 282 DIVEKEGIKRTFLE--VENADLILLLKEINSKK 312 I E + F++ +E+AD+++ + EI K+ Sbjct: 74 PIYEMQSSMMAFVKGALEDADILIYMVEIGEKE 106 >gi|261408013|ref|YP_003244254.1| ribosome biogenesis GTP-binding protein YlqF [Paenibacillus sp. Y412MC10] gi|261284476|gb|ACX66447.1| ribosome biogenesis GTP-binding protein YlqF [Paenibacillus sp. Y412MC10] Length = 288 Score = 43.9 bits (102), Expect = 0.048, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 7/89 (7%) Query: 190 KEVLNDI-LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVT 248 K++ N I L LK I I++G +R ++I+G N GKS+L N LA +++A Sbjct: 94 KDIPNQIKLLLKEKIDKQIAKGMNPRAMR----VLIVGIPNVGKSTLINRLAGRNIAETG 149 Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 D PG T+ I + G +++ DT GI Sbjct: 150 DRPGVTKGQQWI--KVAGGEMELLDTPGI 176 >gi|329924289|ref|ZP_08279444.1| ribosome biogenesis GTP-binding protein YlqF [Paenibacillus sp. HGF5] gi|328940771|gb|EGG37086.1| ribosome biogenesis GTP-binding protein YlqF [Paenibacillus sp. HGF5] Length = 288 Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 7/89 (7%) Query: 190 KEVLNDI-LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVT 248 K++ N I L LK I I++G +R ++I+G N GKS+L N LA +++A Sbjct: 94 KDIPNQIKLLLKEKIDKQIAKGMNPRAMR----VLIVGIPNVGKSTLINRLAGRNIAETG 149 Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 D PG T+ I + G +++ DT GI Sbjct: 150 DRPGVTKGQQWI--KVAGGEMELLDTPGI 176 >gi|315648160|ref|ZP_07901261.1| ribosome biogenesis GTP-binding protein YlqF [Paenibacillus vortex V453] gi|315276806|gb|EFU40149.1| ribosome biogenesis GTP-binding protein YlqF [Paenibacillus vortex V453] Length = 288 Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 7/89 (7%) Query: 190 KEVLNDI-LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVT 248 K++ N I L LK I I++G +R ++I+G N GKS+L N LA +++A Sbjct: 94 KDIPNQIKLLLKEKIDKQIAKGMNPRAMR----VLIVGIPNVGKSTLINRLAGRNIAETG 149 Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 D PG T+ I + G +++ DT GI Sbjct: 150 DRPGVTKGQQWI--KVAGGEMELLDTPGI 176 >gi|271501406|ref|YP_003334431.1| GTP-binding protein HSR1-like protein [Dickeya dadantii Ech586] gi|270344961|gb|ACZ77726.1| GTP-binding protein HSR1-related protein [Dickeya dadantii Ech586] Length = 291 Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 37/59 (62%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 I I+G + AGKSSL NAL K DV+ V+D+ TR+ L + + + + + + D G+ E+ Sbjct: 39 IGIIGKTGAGKSSLCNALFKGDVSAVSDVSACTREPLRLRISVGRHSLTLVDLPGVGES 97 >gi|168486390|ref|ZP_02710898.1| GTP-binding protein [Streptococcus pneumoniae CDC1087-00] gi|183570601|gb|EDT91129.1| GTP-binding protein [Streptococcus pneumoniae CDC1087-00] Length = 368 Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust. Identities = 48/174 (27%), Positives = 74/174 (42%), Gaps = 45/174 (25%) Query: 151 SGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQG 210 SG++S QW+ K H D+ + ++ + KEV++ I Sbjct: 118 SGKIS----QWLMKRAHEEGLRPVDVVLTSAQN--KHAIKEVIDKI-------------- 157 Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLE 265 E R G + ++G +N GKS+L NA+ + ++V + PGTT D + I LD Sbjct: 158 ---EYYRKGRDVYVVGVTNVGKSTLINAIIQEITGDQNVITTSRFPGTTLDKIEIPLDDG 214 Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319 Y I DT GI + +L +N LK ++ KKEI PK Sbjct: 215 SY---IYDTPGIIHRHQMAH-------YLTAKN------LKYVSPKKEIK-PKT 251 >gi|50913635|ref|YP_059607.1| GTP-binding protein YqeH [Streptococcus pyogenes MGAS10394] gi|94989767|ref|YP_597867.1| GTP-binding protein YqeH [Streptococcus pyogenes MGAS10270] gi|50902709|gb|AAT86424.1| GTP-binding protein [Streptococcus pyogenes MGAS10394] gi|94543275|gb|ABF33323.1| GTP-binding protein [Streptococcus pyogenes MGAS10270] Length = 372 Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 8/67 (11%) Query: 216 IRNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270 +RNG + ++G +N GKS+L NA+ KDV + PGTT D + I LD + Sbjct: 160 LRNGRDVYVVGVTNVGKSTLINAIIQEITGNKDVITTSRFPGTTLDKIEIPLDDGTF--- 216 Query: 271 ISDTAGI 277 I DT GI Sbjct: 217 IFDTPGI 223 >gi|18310642|ref|NP_562576.1| ferrous iron transport protein B [Clostridium perfringens str. 13] gi|18145323|dbj|BAB81366.1| probable ferrous iron transport protein B [Clostridium perfringens str. 13] Length = 587 Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 42/84 (50%), Gaps = 9/84 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL--VKISDTAGIRE 279 I +LG+ N GK++LFNAL + V + PG T D EG KI D GI Sbjct: 4 IALLGNPNVGKTTLFNALTGSNQH-VGNWPGVTVD------KKEGLFNSNKIVDLPGIYA 56 Query: 280 TDDIVEKEGIKRTFLEVENADLIL 303 D +E + + FLE + DLIL Sbjct: 57 LDTFSNEEKVSKKFLESGDVDLIL 80 >gi|118462577|ref|YP_882247.1| GTP-binding protein EngA [Mycobacterium avium 104] gi|254775515|ref|ZP_05217031.1| GTP-binding protein EngA [Mycobacterium avium subsp. avium ATCC 25291] gi|166225825|sp|A0QH59|DER_MYCA1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|118163864|gb|ABK64761.1| GTP-binding protein EngA [Mycobacterium avium 104] Length = 466 Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust. Identities = 34/154 (22%), Positives = 67/154 (43%), Gaps = 17/154 (11%) Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVE 285 G N GKS+L N + + A+V D+PG TRD ++ D G + DT G ++ Sbjct: 36 GRPNVGKSTLVNRILGRREAVVQDVPGVTRDRVSYDALWTGRRFVVQDTGGWEPDAKGLQ 95 Query: 286 KEGIKRTFLEVENADLILLLKE----------------INSKKEISFPKN-IDFIFIGTK 328 + ++ + + AD ++L+ + + S K + N +D Sbjct: 96 QLVAEQASVAMRTADAVILVVDALVGATTADEAAARILLRSGKPVFLAANKVDSDKAEAD 155 Query: 329 SDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362 + + + H IS+ G G+ +L++++ + L Sbjct: 156 AAMLWSLGLGEPHPISAMHGRGVADLLDEVLAAL 189 Score = 43.9 bits (102), Expect = 0.052, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 35/58 (60%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 ++ ++G N GKSSL N LA ++V D+ GTT D + ++L + + DTAG+R Sbjct: 204 RVALVGKPNVGKSSLLNKLAGDQRSVVHDVAGTTVDPVDSLIELGDRVWRFVDTAGLR 261 >gi|4583532|gb|AAD25116.1|AF140550_7 YfgK [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 268 Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 47/73 (64%), Gaps = 5/73 (6%) Query: 246 IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTFLEVENADLI 302 +V D+PGTTRD + I ++ + + DTAG+R+ D VEK + +T +E+A+++ Sbjct: 7 VVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRKRGKITDAVEKFSVIKTLQAIEDANVV 66 Query: 303 LLLKEINSKKEIS 315 LL+ I++++ IS Sbjct: 67 LLV--IDAREGIS 77 >gi|242309064|ref|ZP_04808219.1| GTP-binding protein Era [Helicobacter pullorum MIT 98-5489] gi|239524488|gb|EEQ64354.1| GTP-binding protein Era [Helicobacter pullorum MIT 98-5489] Length = 294 Score = 43.9 bits (102), Expect = 0.050, Method: Compositional matrix adjust. Identities = 27/102 (26%), Positives = 52/102 (50%), Gaps = 4/102 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + +LG NAGKS+ N L + +A+++ TR + + + +E + DT GI + + Sbjct: 8 VAVLGRPNAGKSTFLNTLLGERLALISHKANATRKRMNLVVMVEETQIVFVDTPGIHKQE 67 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI 323 ++ + +K +++ D +L L + K I F IDF+ Sbjct: 68 KLLNQYMLKEAMKAMQDCDFLLFLAPASDK--IDF--YIDFL 105 >gi|94991776|ref|YP_599875.1| GTP-binding protein YqeH [Streptococcus pyogenes MGAS2096] gi|94545284|gb|ABF35331.1| GTP-binding protein [Streptococcus pyogenes MGAS2096] Length = 372 Score = 43.9 bits (102), Expect = 0.050, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 8/67 (11%) Query: 216 IRNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270 +RNG + ++G +N GKS+L NA+ KDV + PGTT D + I LD + Sbjct: 160 LRNGRDVYVVGVTNVGKSTLINAIIQEITGNKDVITTSRFPGTTLDKIEIPLDDGTF--- 216 Query: 271 ISDTAGI 277 I DT GI Sbjct: 217 IFDTPGI 223 >gi|150020381|ref|YP_001305735.1| GTP-binding protein, HSR1-related [Thermosipho melanesiensis BI429] gi|149792902|gb|ABR30350.1| GTP-binding protein, HSR1-related [Thermosipho melanesiensis BI429] Length = 258 Score = 43.9 bits (102), Expect = 0.050, Method: Compositional matrix adjust. Identities = 36/98 (36%), Positives = 51/98 (52%), Gaps = 13/98 (13%) Query: 180 EEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL 239 E V +FS E +N I K I+SH S+ KLGE +++I G N GKS++ N Sbjct: 73 ETSPVISFSKAESVNKI---KGFINSH-SKKKLGET-----RVLIAGVPNVGKSTIINKF 123 Query: 240 AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 + + +A PG TR + I+L VK+ DT GI Sbjct: 124 SGRKLAKTGMAPGITRGLQWINLG----SVKLLDTPGI 157 >gi|41407513|ref|NP_960349.1| GTP-binding protein EngA [Mycobacterium avium subsp. paratuberculosis K-10] gi|81831811|sp|Q740D6|DER_MYCPA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|41395866|gb|AAS03732.1| hypothetical protein MAP_1415 [Mycobacterium avium subsp. paratuberculosis K-10] Length = 466 Score = 43.9 bits (102), Expect = 0.050, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 35/58 (60%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 ++ ++G N GKSSL N LA ++V D+ GTT D + ++L + + DTAG+R Sbjct: 204 RVALVGKPNVGKSSLLNKLAGDQRSVVHDVAGTTVDPVDSLIELGDRVWRFVDTAGLR 261 Score = 43.9 bits (102), Expect = 0.051, Method: Compositional matrix adjust. Identities = 34/154 (22%), Positives = 67/154 (43%), Gaps = 17/154 (11%) Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVE 285 G N GKS+L N + + A+V D+PG TRD ++ D G + DT G ++ Sbjct: 36 GRPNVGKSTLVNRILGRREAVVQDVPGVTRDRVSYDALWTGRRFVVQDTGGWEPDAKGLQ 95 Query: 286 KEGIKRTFLEVENADLILLLKE----------------INSKKEISFPKN-IDFIFIGTK 328 + ++ + + AD ++L+ + + S K + N +D Sbjct: 96 QLVAEQASVAMRTADAVILVVDALVGATTADEAAARILLRSGKPVFLAANKVDSDKAEAD 155 Query: 329 SDLYSTYTEEYDHLISSFTGEGLEELINKIKSIL 362 + + + H IS+ G G+ +L++++ + L Sbjct: 156 AAMLWSLGLGEPHPISAMHGRGVADLLDEVLAAL 189 >gi|238796704|ref|ZP_04640210.1| hypothetical protein ymoll0001_29210 [Yersinia mollaretii ATCC 43969] gi|238719435|gb|EEQ11245.1| hypothetical protein ymoll0001_29210 [Yersinia mollaretii ATCC 43969] Length = 291 Score = 43.9 bits (102), Expect = 0.051, Method: Compositional matrix adjust. Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 5/86 (5%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G + GKSSL NAL + +V V+D+ TRDVL + L + + + D G+ E++ Sbjct: 39 IGIMGKTGVGKSSLCNALFQGEVTPVSDVQACTRDVLRLRLSSGDHSLILVDLPGVGESE 98 Query: 282 --DIVEKEGIKRTFLEVENADLILLL 305 D + +RT E+ DLIL + Sbjct: 99 LRDSEYESLYRRTLPEL---DLILWV 121 >gi|298373637|ref|ZP_06983626.1| GTP-binding protein Era [Bacteroidetes oral taxon 274 str. F0058] gi|298274689|gb|EFI16241.1| GTP-binding protein Era [Bacteroidetes oral taxon 274 str. F0058] Length = 297 Score = 43.9 bits (102), Expect = 0.052, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 66/117 (56%), Gaps = 9/117 (7%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R G+ + I+G+ N GKS+L NAL + ++I+T TTR + ++ E + + SDT G Sbjct: 3 RAGF-VNIVGNPNVGKSTLMNALVGERISIITSKAQTTRHRIMGIVNGEDFQIVYSDTPG 61 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI----FIGTKS 329 + + + +++ + + +++AD++L + ++ E KN DF+ IG+K+ Sbjct: 62 VLKPNYKLQESMREFSDSALKDADILLYVTDVADNCE----KNADFLEKVKHIGSKT 114 >gi|170038957|ref|XP_001847313.1| nucleolar GTP-binding protein 2 [Culex quinquefasciatus] gi|167862591|gb|EDS25974.1| nucleolar GTP-binding protein 2 [Culex quinquefasciatus] Length = 619 Score = 43.9 bits (102), Expect = 0.052, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 3/62 (4%) Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 IR ++ I+G N GKSSL N+L +K +V PG TR + + +D VK+ D+ Sbjct: 268 IRTSIRVGIVGLPNVGKSSLVNSLKRKRACLVGAKPGITRQMQEVQIDSH---VKLLDSP 324 Query: 276 GI 277 GI Sbjct: 325 GI 326 >gi|94987891|ref|YP_595992.1| GTP-binding protein YqeH [Streptococcus pyogenes MGAS9429] gi|94541399|gb|ABF31448.1| GTP-binding protein [Streptococcus pyogenes MGAS9429] Length = 372 Score = 43.9 bits (102), Expect = 0.052, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 8/67 (11%) Query: 216 IRNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270 +RNG + ++G +N GKS+L NA+ KDV + PGTT D + I LD + Sbjct: 160 LRNGRDVYVVGVTNVGKSTLINAIIQEITGNKDVITTSRFPGTTLDKIEIPLDDGTF--- 216 Query: 271 ISDTAGI 277 I DT GI Sbjct: 217 IFDTPGI 223 >gi|56808383|ref|ZP_00366137.1| COG1161: Predicted GTPases [Streptococcus pyogenes M49 591] Length = 214 Score = 43.9 bits (102), Expect = 0.052, Method: Compositional matrix adjust. Identities = 28/67 (41%), Positives = 38/67 (56%), Gaps = 8/67 (11%) Query: 216 IRNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270 +RNG + ++G +N GKS+L NA+ KDV + PGTT D + I LD +G Sbjct: 2 LRNGRDVYVVGVTNVGKSTLINAIIQEITGNKDVITTSRFPGTTLDKIEIPLD-DGTF-- 58 Query: 271 ISDTAGI 277 I DT GI Sbjct: 59 IFDTPGI 65 >gi|227503450|ref|ZP_03933499.1| HflX family GTP-binding protein [Corynebacterium accolens ATCC 49725] gi|227075953|gb|EEI13916.1| HflX family GTP-binding protein [Corynebacterium accolens ATCC 49725] Length = 502 Score = 43.9 bits (102), Expect = 0.052, Method: Compositional matrix adjust. Identities = 51/180 (28%), Positives = 80/180 (44%), Gaps = 27/180 (15%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRE 279 +I I G++NAGKSSL NA+ V +V D T D T L +G V +DT G Sbjct: 275 QIAIAGYTNAGKSSLINAMTNAGV-LVEDALFATLDPTTRRASLADGRQVVFTDTVGFVR 333 Query: 280 TDDIVEKEGIKRTFLEVENADLIL---------LLKEINSKKEISF----------PKNI 320 E K T EV AD++L LK+I + E+ + P I Sbjct: 334 HLPTQLVEAFKSTLEEVLAADIMLHVVDGSDPFPLKQIEAVNEVIYDIVSETGEQAPPEI 393 Query: 321 DFIFIGTKSD--LYSTYTEEYDH----LISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374 I ++D + + DH +S+ TGEG++EL +++ L+++ + +P Sbjct: 394 IVINKIDQADPLVLAELRHVLDHEDVVYVSARTGEGIDELSARVELFLNSRDSHVKLQVP 453 >gi|78187916|ref|YP_375959.1| ferrous iron transport protein B [Chlorobium luteolum DSM 273] gi|78167818|gb|ABB24916.1| Ferrous iron transport protein B [Chlorobium luteolum DSM 273] Length = 712 Score = 43.9 bits (102), Expect = 0.052, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I + G+ N GKSSLFNAL V + PG T + LD GY +K+ D G Sbjct: 9 IALTGNPNCGKSSLFNALTGAHQK-VGNFPGVTIEKYEGYLDYRGYRIKVVDLPGTYSLT 67 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 +E + R +L + D+++ Sbjct: 68 PYSPEEIVTRQYLIEQRPDVVV 89 >gi|167753498|ref|ZP_02425625.1| hypothetical protein ALIPUT_01772 [Alistipes putredinis DSM 17216] gi|167658123|gb|EDS02253.1| hypothetical protein ALIPUT_01772 [Alistipes putredinis DSM 17216] Length = 293 Score = 43.9 bits (102), Expect = 0.052, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 73/139 (52%), Gaps = 7/139 (5%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 I+G+ N GKS+L NAL + ++I+T TTR + + E + + SDT GI + Sbjct: 9 IIGNPNVGKSTLMNALVGERLSIITSKAQTTRHRILGVVSGEDFQIVFSDTPGILKPSYK 68 Query: 284 VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI 343 +++ +K V +AD+IL + + + + ++ D + +SD+ T + I Sbjct: 69 LQESMMKFVTGAVNDADVILYVTDTVEQSD----RSNDILEKIRQSDI---PTLAVINKI 121 Query: 344 SSFTGEGLEELINKIKSIL 362 T E LEEL++K +++L Sbjct: 122 DLTTPEKLEELVDKWQALL 140 >gi|117928001|ref|YP_872552.1| GTP-binding protein Era [Acidothermus cellulolyticus 11B] gi|117648464|gb|ABK52566.1| GTP-binding protein Era [Acidothermus cellulolyticus 11B] Length = 297 Score = 43.9 bits (102), Expect = 0.052, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 1/61 (1%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R+G+ I+G N GKS+L NA+ K VAI +D P TTR V+ + + + DT G Sbjct: 6 RSGFA-CIVGRPNVGKSTLLNAMVKTKVAITSDRPQTTRHVVRGVVHRPDAQLVVVDTPG 64 Query: 277 I 277 + Sbjct: 65 L 65 >gi|257095332|ref|YP_003168973.1| GTP-binding protein HSR1-like [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047856|gb|ACV37044.1| GTP-binding protein HSR1-related [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 294 Score = 43.9 bits (102), Expect = 0.053, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 3/57 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 +++I+G N GKS+L NAL K+ +A V D P T+ T LD+ +L +DT G+ Sbjct: 118 RMLIMGIPNVGKSTLMNALLKRRIAKVGDEPAVTKSQQTSQLDVRHWL---TDTPGL 171 >gi|253583507|ref|ZP_04860705.1| ferrous iron transporter B [Fusobacterium varium ATCC 27725] gi|251834079|gb|EES62642.1| ferrous iron transporter B [Fusobacterium varium ATCC 27725] Length = 731 Score = 43.9 bits (102), Expect = 0.053, Method: Compositional matrix adjust. Identities = 50/202 (24%), Positives = 90/202 (44%), Gaps = 33/202 (16%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ G+ N GKS+L NA+A + V + PG T + + +G +K+ D G+ Sbjct: 3 KLAFTGNPNVGKSALINAIAGSKLK-VGNWPGVTVEKKEAIFNYKGEEIKLVDLPGVYSL 61 Query: 281 DDIVEKEGIKRTFLEVENADLIL----------------LLKEINSKKEISFPKNIDFIF 324 +E I R F+ E+ D+++ LLKE+ ++ +F Sbjct: 62 SPYTLEEKITRDFILDESPDVVVNVIDSTNLERNLYLTYLLKELEKPTIMALNFYDEFTK 121 Query: 325 IGTKSDLYSTYTEEYDHLI-------SSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377 + K +L EE+ LI S+ G G+EEL++ I + + K K +S+P Sbjct: 122 LNYKLNL-----EEFQELIELKAIPVSALKGTGIEELLDSIIELAAKKEKAKKYSLPFDD 176 Query: 378 RHLYHLSQTVRYLEMASLNEKD 399 ++ +R LE +++K+ Sbjct: 177 ----SITGVIRNLEKKIISDKN 194 >gi|70726319|ref|YP_253233.1| GTP-binding protein YqeH [Staphylococcus haemolyticus JCSC1435] gi|68447043|dbj|BAE04627.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 366 Score = 43.9 bits (102), Expect = 0.053, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 67/152 (44%), Gaps = 21/152 (13%) Query: 217 RNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 RN + I+G +N GKS+L N L +KDV + PGTT D++ I LD + ++ Sbjct: 158 RNKQDVYIVGTTNVGKSTLINKLIEQSVGEKDVVTTSRFPGTTLDLIDIPLDEKTFMY-- 215 Query: 272 SDTAGI------------RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319 DT GI +E IV K IK+ ++ N L ++ +S K Sbjct: 216 -DTPGIIQSHQMTHYVSEKELKTIVPKNEIKQRVFQL-NEGQTLFFGGLSRIDYVSGGKR 273 Query: 320 IDFIFIGTKSDLYSTYTEEYDHLISSFTGEGL 351 + +++ T TE+ + L + G L Sbjct: 274 PLVCYFSNDLNIHRTKTEKANDLWRNQIGNVL 305 >gi|148255461|ref|YP_001240046.1| putative GTP-binding protein (hflX) [Bradyrhizobium sp. BTAi1] gi|146407634|gb|ABQ36140.1| GTP-binding protein HflX [Bradyrhizobium sp. BTAi1] Length = 459 Score = 43.9 bits (102), Expect = 0.053, Method: Compositional matrix adjust. Identities = 44/186 (23%), Positives = 77/186 (41%), Gaps = 29/186 (15%) Query: 217 RNGYKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 R Y++V L G++NAGKS+LFN L + DV + T L G +SDT Sbjct: 222 RVPYRVVALVGYTNAGKSTLFNRLTRADVQAADMLFATLDPTLRAITLPHGGKAMLSDTV 281 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF--IGTKSDLYS 333 G + T EV AD+IL +++++ + + +++ + +G + Sbjct: 282 GFISNLPTQLVAAFRATLEEVLEADVILHVRDMSHEDAEAQQHDVELVLGQLGIDPEATD 341 Query: 334 TYTEEYDH--------------------------LISSFTGEGLEELINKIKSILSNKFK 367 T E ++ L+S+ TGEG++ L+ I+ L+ Sbjct: 342 TIIEVWNKIDRLDEAARENLANIASRRPPERPCLLVSAHTGEGVDALLQAIEDRLAAART 401 Query: 368 KLPFSI 373 L +I Sbjct: 402 TLDLTI 407 >gi|320529427|ref|ZP_08030515.1| GTP-binding protein Era [Selenomonas artemidis F0399] gi|320138393|gb|EFW30287.1| GTP-binding protein Era [Selenomonas artemidis F0399] Length = 298 Score = 43.9 bits (102), Expect = 0.053, Method: Compositional matrix adjust. Identities = 26/63 (41%), Positives = 35/63 (55%), Gaps = 3/63 (4%) Query: 218 NGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274 N YK ++G NAGKS+L NAL + +AI++D P TTR + L E V DT Sbjct: 2 NHYKSGFAAVIGRPNAGKSTLINALIGQKIAIMSDKPQTTRSRILCILTQEDAQVIFLDT 61 Query: 275 AGI 277 G+ Sbjct: 62 PGV 64 >gi|296330959|ref|ZP_06873434.1| putative GTP-binding protein protease modulator [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674477|ref|YP_003866149.1| putative GTP-binding protein protease modulator [Bacillus subtilis subsp. spizizenii str. W23] gi|296151964|gb|EFG92838.1| putative GTP-binding protein protease modulator [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412721|gb|ADM37840.1| putative GTP-binding protein protease modulator [Bacillus subtilis subsp. spizizenii str. W23] Length = 420 Score = 43.9 bits (102), Expect = 0.053, Method: Compositional matrix adjust. Identities = 34/91 (37%), Positives = 49/91 (53%), Gaps = 3/91 (3%) Query: 217 RNGY-KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDT 274 +NG +I ++G++NAGKS+ FN L D + D+ T D +T + L GY V +SDT Sbjct: 197 KNGVLQIALVGYTNAGKSTWFNRLTSAD-SYEEDLLFATLDPMTRKMVLPSGYSVLLSDT 255 Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLL 305 G + + T EV+ ADLIL L Sbjct: 256 VGFIQDLPTTLIAAFRSTLEEVKEADLILHL 286 >gi|260101321|ref|ZP_05751558.1| GTP-binding protein Era [Lactobacillus helveticus DSM 20075] gi|260084906|gb|EEW69026.1| GTP-binding protein Era [Lactobacillus helveticus DSM 20075] gi|328465883|gb|EGF37066.1| GTPase Era [Lactobacillus helveticus MTCC 5463] Length = 301 Score = 43.9 bits (102), Expect = 0.053, Method: Compositional matrix adjust. Identities = 43/161 (26%), Positives = 71/161 (44%), Gaps = 20/161 (12%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + +LG N GKS+L N L + VAI ++ P TTR+ ++ + V DT GI + Sbjct: 11 VALLGRPNVGKSTLMNYLVGQKVAITSNKPQTTRNRISGIYTSDKMQVVFVDTPGIFKPH 70 Query: 282 DIVEKEGIKRTFLEVENADLILLLKE-----------INSKKEISFP-----KNIDFIFI 325 ++ K + + + DL+L + E N KE+ P +D I Sbjct: 71 SKLDDYMDKASLSSLNDVDLVLFMVEPEEIGKGDQYIANLLKEVKVPVFLVINKVDQIHP 130 Query: 326 GTKSDLYSTY--TEEYDHL--ISSFTGEGLEELINKIKSIL 362 + +Y E + + IS+ G G+E+L+N I L Sbjct: 131 NKLLPIMDSYHKLEGFKEILPISATQGIGIEDLLNTINKYL 171 >gi|167771317|ref|ZP_02443370.1| hypothetical protein ANACOL_02675 [Anaerotruncus colihominis DSM 17241] gi|167666568|gb|EDS10698.1| hypothetical protein ANACOL_02675 [Anaerotruncus colihominis DSM 17241] Length = 438 Score = 43.9 bits (102), Expect = 0.053, Method: Compositional matrix adjust. Identities = 46/177 (25%), Positives = 81/177 (45%), Gaps = 21/177 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGI--R 278 + I+G++N GKS+L NAL V + D T D + L L +G V + DT G+ R Sbjct: 226 VAIVGYTNVGKSTLLNALTGAGV-LSEDKLFATLDPTSRALTLPDGRSVMLIDTVGLVRR 284 Query: 279 ETDDIVEKEGIKRTFLEVENADLIL---------LLKEINSKKEISF---PKNIDFIFIG 326 +V E + T E ADL+ + ++++ +++ ++I + I Sbjct: 285 LPHQLV--EAFQSTLEEAAGADLLWCVCDAASDEMAEQVDVTRQLMRELGAQDIPMLVIL 342 Query: 327 TKSDLYSTYTEEYDH---LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380 K DL + + LIS+ TG G + L+ K +L+ +++ +P K L Sbjct: 343 NKCDLVADVPRALNQQTALISARTGFGFDMLLQKTSELLAPTHRRVTLMLPYDKTGL 399 >gi|138894843|ref|YP_001125296.1| GTP-binding protein hflX [Geobacillus thermodenitrificans NG80-2] gi|196248586|ref|ZP_03147287.1| GTP-binding proten HflX [Geobacillus sp. G11MC16] gi|134266356|gb|ABO66551.1| GTP-binding protein hflX [Geobacillus thermodenitrificans NG80-2] gi|196212311|gb|EDY07069.1| GTP-binding proten HflX [Geobacillus sp. G11MC16] Length = 415 Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 2/87 (2%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAG 276 +++ ++G++NAGKS+LFN L D ++ ++ T D LT L GY V ++DT G Sbjct: 195 RAFQVALVGYTNAGKSTLFNRLTAAD-SLEENLLFATLDPLTRKCILPCGYTVLLTDTVG 253 Query: 277 IRETDDIVEKEGIKRTFLEVENADLIL 303 + + T EV+ ADL+L Sbjct: 254 FIQDLPTTLVAAFRSTLEEVKEADLLL 280 >gi|319788336|ref|YP_004147811.1| ribosome biogenesis GTP-binding protein YsxC [Pseudoxanthomonas suwonensis 11-1] gi|317466848|gb|ADV28580.1| ribosome biogenesis GTP-binding protein YsxC [Pseudoxanthomonas suwonensis 11-1] Length = 206 Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 35/54 (64%), Gaps = 1/54 (1%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKD-VAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 G+++ G SNAGKSS NAL +++ +A V+ PG T+ ++ ++ E YLV + Sbjct: 25 GFEVAFAGRSNAGKSSALNALTRQNALARVSKTPGRTQQLVYFEVAPERYLVDL 78 >gi|317508759|ref|ZP_07966410.1| GTP-binding protein Era [Segniliparus rugosus ATCC BAA-974] gi|316252953|gb|EFV12372.1| GTP-binding protein Era [Segniliparus rugosus ATCC BAA-974] Length = 301 Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 1/69 (1%) Query: 209 QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL 268 Q + E R+G+ + G N GKSSL NAL +V I + P TTR + L+ + Sbjct: 2 QHRFPEGFRSGF-VCFAGRPNVGKSSLINALVGAEVMITSAHPQTTRRAVRAILNAPEHQ 60 Query: 269 VKISDTAGI 277 + I DT G+ Sbjct: 61 IVIVDTPGV 69 >gi|307108122|gb|EFN56363.1| hypothetical protein CHLNCDRAFT_144853 [Chlorella variabilis] Length = 581 Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 1/61 (1%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRE 279 +I I+G N GKS+L N L + + PG TRD + ++ EG V++ DTAG IR Sbjct: 304 RIAIMGLPNVGKSTLANWLLGSERCLTGPEPGLTRDAIKERIEWEGQEVELVDTAGWIRR 363 Query: 280 T 280 T Sbjct: 364 T 364 Score = 40.4 bits (93), Expect = 0.57, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 4/88 (4%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPG--TTRDVLTIDLDLEGYLVKISDTAGIRE 279 + I+G N GKS+LFN L ++ A+V D PG TRD L ++ DT+G+ Sbjct: 41 VAIIGRPNVGKSALFNRLVRRREAVVHDTPGGHVTRDYQEGVARLADLRFRVIDTSGLEP 100 Query: 280 --TDDIVEKEGIKRTFLEVENADLILLL 305 D ++ T + +D+ L L Sbjct: 101 FLPGDSIQARATVLTATVLARSDIALFL 128 >gi|88658308|ref|YP_507292.1| GTP-binding protein Era [Ehrlichia chaffeensis str. Arkansas] gi|123493487|sp|Q2GGZ1|ERA_EHRCR RecName: Full=GTPase Era gi|88599765|gb|ABD45234.1| GTP-binding protein Era [Ehrlichia chaffeensis str. Arkansas] Length = 296 Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 75/162 (46%), Gaps = 21/162 (12%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 I+G +NAGKS+L N L + VA VT TTR + L+ E + DT GI Sbjct: 13 IVGTTNAGKSTLINMLVGQKVAAVTPKVQTTRVRMHAVLNNENVQLIFIDTPGIFSPKTK 72 Query: 284 VEKEGIKRTFLEVENADLILLLKEINS------KKEISFPK--NIDFIFIGTKSD----- 330 +EK +K ++ ++ + ++LL ++ + +K IS K NI+ I + K D Sbjct: 73 LEKFIVKHAWMSLKGIENVILLLDVKNYLNKHIEKIISRIKQSNINAILVVNKIDTVPTS 132 Query: 331 --------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364 +YS ++ IS+ GL L++ + I N Sbjct: 133 SVDKAIEHMYSLHSFSKTFTISALHDIGLSRLVDYLCEISPN 174 >gi|240850198|ref|YP_002971591.1| GTP-binding protein Era [Bartonella grahamii as4aup] gi|240267321|gb|ACS50909.1| GTP-binding protein Era [Bartonella grahamii as4aup] Length = 301 Score = 43.9 bits (102), Expect = 0.055, Method: Compositional matrix adjust. Identities = 50/197 (25%), Positives = 91/197 (46%), Gaps = 44/197 (22%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV---LTIDLDLEGYLVKISD 273 R+G+ +V++G NAGKS+L N L V+IVT TTR + + I D++ LV D Sbjct: 8 RSGF-VVLIGMPNAGKSTLVNQLVGTKVSIVTHKVQTTRTLIRGIVIHDDVQIVLV---D 63 Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS-----------------KKEISF 316 T G+ +E+ + + ++AD++L+L + S ++++ Sbjct: 64 TPGVFRPHKRLERAMVSAAWGGAKSADVLLVLIDAQSGLSDEVDMMLDIVNNMKQEKVLV 123 Query: 317 PKNIDFIFIGTKSDLYSTYTEEYDH-------LISSFTGEGLEELINKIKSILSNKFKKL 369 +D + KS L + T+ + +IS+ G G ++L++ LSN ++ Sbjct: 124 LNKVDTV---VKSSLLALTTKINERVKFAQTFMISALNGSGCKDLLHA----LSNMMQEG 176 Query: 370 PFSIPSHK------RHL 380 P+ P + RHL Sbjct: 177 PWYYPEDQISDMPMRHL 193 >gi|160901780|ref|YP_001567361.1| GTP-binding protein Era [Petrotoga mobilis SJ95] gi|160359424|gb|ABX31038.1| GTP-binding protein Era [Petrotoga mobilis SJ95] Length = 306 Score = 43.9 bits (102), Expect = 0.055, Method: Compositional matrix adjust. Identities = 51/192 (26%), Positives = 82/192 (42%), Gaps = 27/192 (14%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + + G N GKS+L NAL + V IV+D TTR+ + L + Y + DT GI + Sbjct: 11 VALAGKPNVGKSTLINALLGQKVVIVSDKTQTTRNRVNCILTEDHYQIVFVDTPGIHKPI 70 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK----------KEISFPKNIDFIFIGTKSDL 331 + + + ++ DLIL + I++K EI I I + K DL Sbjct: 71 RKIGEYMVNIAINALKGVDLILFI--IDAKDGLRNSDLRVTEIVDKSKIPTILLVNKVDL 128 Query: 332 Y------STYTEEYDHL---------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376 + TE+ L IS+ TG+ L EL I +L + P + + Sbjct: 129 VKDKEKINLMTEKIQSLCSNIVKTIEISALTGKNLSELKQSIIDLLPEGPQYYPEDMITD 188 Query: 377 KRHLYHLSQTVR 388 K + +S+ +R Sbjct: 189 KPSRFIISELIR 200 >gi|269958647|ref|YP_003328434.1| GTP-binding protein Era [Anaplasma centrale str. Israel] gi|269848476|gb|ACZ49120.1| GTP-binding protein Era [Anaplasma centrale str. Israel] Length = 297 Score = 43.9 bits (102), Expect = 0.055, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 46/86 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G +NAGKS+L N L +IVT TTR + + + +DT G+ Sbjct: 12 VAVVGATNAGKSTLINELVGFKASIVTPKVHTTRVRMNAVRNDGNVQLVFTDTPGVFAPK 71 Query: 282 DIVEKEGIKRTFLEVENADLILLLKE 307 ++EK +K ++ + AD+++L+ E Sbjct: 72 TVLEKFLVKNAWMSIRGADIVVLVLE 97 >gi|240950443|ref|ZP_04754692.1| small GTP-binding protein [Actinobacillus minor NM305] gi|240295026|gb|EER45887.1| small GTP-binding protein [Actinobacillus minor NM305] Length = 287 Score = 43.9 bits (102), Expect = 0.055, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 34/59 (57%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 I I+G S AGKSS NAL ++D+ + + G TR++ I + L +V + D GI E Sbjct: 38 IGIMGKSGAGKSSFVNALCQEDICRTSGVGGCTREIQEIAIKLGEMVVHLYDFPGIAEN 96 >gi|158292289|ref|XP_313813.4| AGAP004514-PA [Anopheles gambiae str. PEST] gi|157017366|gb|EAA09214.4| AGAP004514-PA [Anopheles gambiae str. PEST] Length = 575 Score = 43.9 bits (102), Expect = 0.055, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 3/62 (4%) Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 IR ++ ++G N GKSSL N+L +K +V PG TR + + +D VK+ D+ Sbjct: 258 IRTSIRVGVVGLPNVGKSSLVNSLKRKRACMVGARPGVTRQMQEVQIDSH---VKLLDSP 314 Query: 276 GI 277 GI Sbjct: 315 GI 316 >gi|221309623|ref|ZP_03591470.1| YnbA [Bacillus subtilis subsp. subtilis str. 168] gi|221323141|ref|ZP_03604435.1| YnbA [Bacillus subtilis subsp. subtilis str. SMY] gi|255767409|ref|NP_389625.2| GTP-binding protein protease modulator [Bacillus subtilis subsp. subtilis str. 168] gi|238054339|sp|P94478|YNBA_BACSU RecName: Full=Putative GTP-binding protein ynbA gi|225185036|emb|CAB13627.2| putative GTP-binding protein protease modulator [Bacillus subtilis subsp. subtilis str. 168] Length = 420 Score = 43.9 bits (102), Expect = 0.056, Method: Compositional matrix adjust. Identities = 34/91 (37%), Positives = 49/91 (53%), Gaps = 3/91 (3%) Query: 217 RNGY-KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDT 274 +NG +I ++G++NAGKS+ FN L D + D+ T D +T + L GY V +SDT Sbjct: 197 KNGVLQIALVGYTNAGKSTWFNRLTSAD-SYEEDLLFATLDPMTRKMVLPSGYSVLLSDT 255 Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLL 305 G + + T EV+ ADLIL L Sbjct: 256 VGFIQDLPTTLIAAFRSTLEEVKEADLILHL 286 >gi|24372195|ref|NP_716237.1| GTP-binding protein HflX [Shewanella oneidensis MR-1] gi|24346104|gb|AAN53682.1|AE015507_8 GTP-binding protein HflX [Shewanella oneidensis MR-1] Length = 435 Score = 43.9 bits (102), Expect = 0.056, Method: Compositional matrix adjust. Identities = 63/227 (27%), Positives = 95/227 (41%), Gaps = 34/227 (14%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRE- 279 + ++G++NAGKS+LFNAL DV + T L LDL V ++DT G IR Sbjct: 200 VSLVGYTNAGKSTLFNALTSSDVYAADQLFATLDPTLR-KLDLPDGAVILADTVGFIRHL 258 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEI-------NSKKEISFPKNIDF-----IFIGT 327 D+V K T E A+L+L + + N ++ S K ID + + Sbjct: 259 PHDLV--AAFKATLQETRQAELLLHIVDCADENMADNFEQVQSVLKEIDADEVMQLIVCN 316 Query: 328 KSDLYSTYTE--EYDH-------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378 K DL T EYD +S+ G + L+ I ++ + IP+ Sbjct: 317 KIDLLEDVTPRIEYDDRGKPVRVWVSAHKRLGFDLLLKAITELIGEVIHEFTLRIPATAG 376 Query: 379 HLYHLSQTVRYLEMASLNEKDCGLDIIAENL------RLASVSLGKI 419 H +L Q R + D G I++ L RLA S G++ Sbjct: 377 H--YLGQFYRLDAIQQKEYDDLGNCILSVRLSDADWRRLAKQSQGEL 421 >gi|15828851|ref|NP_326211.1| GTP-binding protein Era [Mycoplasma pulmonis UAB CTIP] gi|21263604|sp|Q98QI1|ERA_MYCPU RecName: Full=GTPase Era gi|14089794|emb|CAC13553.1| GTP-BINDING PROTEIN ERA [Mycoplasma pulmonis] Length = 293 Score = 43.9 bits (102), Expect = 0.056, Method: Compositional matrix adjust. Identities = 26/87 (29%), Positives = 46/87 (52%) Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282 I+G N GKS+L N + + D+AIV+ P TRD + + Y + +DT GI +T Sbjct: 7 TIIGRPNVGKSTLLNNILEYDLAIVSSKPQATRDQIMGIYSDDDYQLIFTDTPGIYKTKT 66 Query: 283 IVEKEGIKRTFLEVENADLILLLKEIN 309 + +++ +++ DL++ L N Sbjct: 67 KFGENLNAQSYESLKDIDLVIFLSPAN 93 >gi|315231324|ref|YP_004071760.1| GTP-binding HflX-like protein [Thermococcus barophilus MP] gi|315184352|gb|ADT84537.1| GTP-binding HflX-like protein [Thermococcus barophilus MP] Length = 428 Score = 43.9 bits (102), Expect = 0.056, Method: Compositional matrix adjust. Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 6/94 (6%) Query: 219 GYKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 G+ IV L G++NAGKS+L NALA++++ D TT D T + V ++DT G Sbjct: 184 GFIIVALAGYTNAGKSTLLNALAREEIP-AKDQMFTTLDTTTRRFKVNQKRVLVTDTVGF 242 Query: 278 RETDDIVE--KEGIKRTFLEVENADLILLLKEIN 309 DD+ E T E+ AD+ILL+ +++ Sbjct: 243 --IDDLPPFIVEAFHSTLEEITKADIILLVLDVS 274 >gi|160944574|ref|ZP_02091802.1| hypothetical protein FAEPRAM212_02088 [Faecalibacterium prausnitzii M21/2] gi|158444356|gb|EDP21360.1| hypothetical protein FAEPRAM212_02088 [Faecalibacterium prausnitzii M21/2] Length = 421 Score = 43.9 bits (102), Expect = 0.056, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 87/182 (47%), Gaps = 28/182 (15%) Query: 217 RNGYKIV-ILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270 + G +V ++G++N GKSSL NAL A+ D+ T P + + VL G V Sbjct: 205 KTGMPVVSLVGYTNVGKSSLMNALCGPSVAEADMLFATLDPTSRKLVLP-----SGMAVL 259 Query: 271 ISDTAGI--RETDDIVEKEGIKRTFLEVENADLILLLKEI-NSKKEISFP---------- 317 + DT G R ++V E K T E +D+I+ + + + ++E Sbjct: 260 LVDTVGFVSRLPHNLV--EAFKSTLEEAAWSDVIVRVADAGDEQREEQLAVTDEVLDGLD 317 Query: 318 -KNIDFIFIGTKSDLYSTYTEEYDHLISSF-TGEGLEELINKIKSILSNKFKKLPFSIPS 375 +I + + K D +T + + D L++S TG GL++L+ K+ +LS++ + +P Sbjct: 318 CTDIPRLTVYNKCDKPNTLSFDPDILLTSAKTGYGLDKLLQKLDEVLSDRVHTIRVLLPY 377 Query: 376 HK 377 K Sbjct: 378 DK 379 >gi|158521130|ref|YP_001529000.1| GTP-binding protein Era [Desulfococcus oleovorans Hxd3] gi|158509956|gb|ABW66923.1| GTP-binding protein Era [Desulfococcus oleovorans Hxd3] Length = 303 Score = 43.9 bits (102), Expect = 0.056, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 1/61 (1%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R+G+ I I G NAGKS+L N LA + ++I +D P TTR+ + ++ + V DT G Sbjct: 12 RSGF-IAICGPPNAGKSTLLNLLAGEKISITSDKPQTTRNRILGVVNRKNAQVVFVDTPG 70 Query: 277 I 277 I Sbjct: 71 I 71 >gi|75675642|ref|YP_318063.1| GTP-binding protein, HSR1-related [Nitrobacter winogradskyi Nb-255] gi|74420512|gb|ABA04711.1| GTP-binding protein HflX [Nitrobacter winogradskyi Nb-255] Length = 442 Score = 43.9 bits (102), Expect = 0.056, Method: Compositional matrix adjust. Identities = 52/187 (27%), Positives = 78/187 (41%), Gaps = 31/187 (16%) Query: 217 RNGYKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDT 274 R Y++V L G++NAGKS+LFN L + DV D+ T D L L G +SDT Sbjct: 205 RVPYRVVALVGYTNAGKSTLFNRLTRADVQ-AADMLFATLDPTLRSLALPHGGKAMLSDT 263 Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----------------------- 311 G + T EV AD+IL +++I+ + Sbjct: 264 VGFISNLPTQLVAAFRATLEEVMEADVILHVRDISHEDTEPQQHDVEAVLHQLGIDPDGP 323 Query: 312 -KEISFPKNIDFIFIGTKSDLYSTY----TEEYDHLISSFTGEGLEELINKIKSILSNKF 366 + I ID + DL + T+ L+S+ TGEG+E L+ I+ L+ Sbjct: 324 ARMIEVWNKIDRFDADQRKDLENVAARRSTDVPRFLVSAETGEGVETLLAAIEDRLAATR 383 Query: 367 KKLPFSI 373 L S+ Sbjct: 384 TTLDLSV 390 >gi|328955564|ref|YP_004372897.1| GTP-binding protein HflX [Coriobacterium glomerans PW2] gi|328455888|gb|AEB07082.1| GTP-binding protein HflX [Coriobacterium glomerans PW2] Length = 443 Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust. Identities = 47/187 (25%), Positives = 79/187 (42%), Gaps = 25/187 (13%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGI 277 ++I + G++NAGKS+L N L D+ + D T D T L G L ++DT G Sbjct: 209 AFRIALAGYTNAGKSTLMNRLTGSDI-MSADKLFATLDPTTRAFKLPGGRLCTLTDTVGF 267 Query: 278 RETDDIVEKEGIKRTFLEVENADLIL-------------------LLKEINS--KKEISF 316 + + K T E ++D+IL +L EI + ++ ++ Sbjct: 268 IQKLPHGLVDAFKSTLAEARDSDIILEVVDASDENYLRQMSAVDVVLDEIGASEQRRVTV 327 Query: 317 PKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376 ID I ++DL + + L+SS G G+E L+ ++ S + IP Sbjct: 328 LNKIDLIDPLDRADLERRHPDA--ELVSSVNGLGIERLLERLSCEASTLDSVISLRIPYR 385 Query: 377 KRHLYHL 383 + L L Sbjct: 386 EAALISL 392 >gi|269215578|ref|ZP_06159432.1| GTP-binding protein HflX [Slackia exigua ATCC 700122] gi|269131065|gb|EEZ62140.1| GTP-binding protein HflX [Slackia exigua ATCC 700122] Length = 437 Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust. Identities = 52/177 (29%), Positives = 77/177 (43%), Gaps = 25/177 (14%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIR 278 ++I G++NAGKSSL +AL DV + D T D T L L EG I+DT G Sbjct: 215 FRIAEAGYTNAGKSSLIHALTGADV-LSYDKLFATLDSTTRRLSLPEGRDATITDTVGFI 273 Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDFIFIG 326 + E + T E+ ADLIL + + +S + + K +I + + Sbjct: 274 QKLPTNLIEAFRSTLDEISEADLILHVVDASSPRRDAQAKAVVETLGLIEAQDIPCMVVC 333 Query: 327 TKSDLYSTYTEEYDHLI---------SSFTGEGLEELINKIKSILSNKFKKLPFSIP 374 K DL EE LI S+ TGEG++ L I ++ + S+P Sbjct: 334 NKVDLLD--DEERAELIRQHPDACLVSARTGEGMDALKTAIVERIAAYEVPVVLSVP 388 >gi|260887890|ref|ZP_05899153.1| GTP-binding protein [Selenomonas sputigena ATCC 35185] gi|330838754|ref|YP_004413334.1| small GTP-binding protein [Selenomonas sputigena ATCC 35185] gi|260862396|gb|EEX76896.1| GTP-binding protein [Selenomonas sputigena ATCC 35185] gi|329746518|gb|AEB99874.1| small GTP-binding protein [Selenomonas sputigena ATCC 35185] Length = 399 Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust. Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 6/94 (6%) Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKI 271 GE + G+ G NAGKSSL NA+ ++VA+V+ GTT D + ++L V + Sbjct: 9 GERLHIGF----FGRRNAGKSSLINAITGQEVAVVSPEKGTTTDPVAKAMELLPLGPVLL 64 Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 DT G +T D+ E +KRT + D+ +L+ Sbjct: 65 IDTPGFDDTGDLGELR-VKRTRRILNKTDIAVLV 97 >gi|281411667|ref|YP_003345746.1| small GTP-binding protein [Thermotoga naphthophila RKU-10] gi|281372770|gb|ADA66332.1| small GTP-binding protein [Thermotoga naphthophila RKU-10] Length = 404 Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 81/171 (47%), Gaps = 26/171 (15%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280 IV+ G N GKSS N L ++V+IV++ GTT D + ++L V + DT G+ + Sbjct: 12 IVVAGRRNVGKSSFMNTLVGQNVSIVSEYAGTTTDPVYKSMELYPVGPVTLVDTPGLDDV 71 Query: 281 DDI--VEKEGIKRTFLEVENA-------------DLILLLKEINSKKEISFPKNIDFI-F 324 ++ + E +R F + D++ L KE+ EI F ++ I Sbjct: 72 GELGRLRVEKARRVFYRADCGILVTDSEPTPYEDDVVNLFKEM----EIPFVVVVNKIDV 127 Query: 325 IGTKSD----LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371 +G K++ LY + E L+S+ +G +++ I IL +++P+ Sbjct: 128 LGEKAEELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEILPGD-EEIPY 177 >gi|239826727|ref|YP_002949351.1| GTP-binding proten HflX [Geobacillus sp. WCH70] gi|239807020|gb|ACS24085.1| GTP-binding proten HflX [Geobacillus sp. WCH70] Length = 415 Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 2/85 (2%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIR 278 ++I ++G++NAGKS+LFN L D + ++ T D LT + L GY ++DT G Sbjct: 197 FQISLVGYTNAGKSTLFNRLTDAD-SFEENLLFATLDPLTRKITLPSGYTALLTDTVGFI 255 Query: 279 ETDDIVEKEGIKRTFLEVENADLIL 303 + + T EV+ ADLIL Sbjct: 256 QDLPTTLVAAFRSTLEEVKEADLIL 280 >gi|320527305|ref|ZP_08028490.1| GTP-binding protein Era [Solobacterium moorei F0204] gi|320132329|gb|EFW24874.1| GTP-binding protein Era [Solobacterium moorei F0204] Length = 297 Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 1/90 (1%) Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 +R+G+ + + G NAGKS+L N+L + VAIV+ P TTR + E + +DT Sbjct: 1 MRSGF-VALAGRPNAGKSTLINSLIGEKVAIVSSKPQTTRSEIRGIYTDENCQIIFTDTP 59 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLL 305 GI + +E K ++ DLI L+ Sbjct: 60 GIHKPKFRLESRMNKEAADVIQGVDLIYLV 89 >gi|310779271|ref|YP_003967604.1| GTP-binding protein Era [Ilyobacter polytropus DSM 2926] gi|309748594|gb|ADO83256.1| GTP-binding protein Era [Ilyobacter polytropus DSM 2926] Length = 298 Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 37/62 (59%), Gaps = 1/62 (1%) Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 +++G+ I ++G N GKS+L N L + VAIV+D GTTRD + L+ G DT Sbjct: 1 MKSGF-IAVVGRPNVGKSTLTNKLVNEKVAIVSDKAGTTRDSIKGILNHGGNQYIFIDTP 59 Query: 276 GI 277 GI Sbjct: 60 GI 61 >gi|294085068|ref|YP_003551828.1| GTP-binding protein, HSR1-like protein [Candidatus Puniceispirillum marinum IMCC1322] gi|292664643|gb|ADE39744.1| GTP-binding protein, HSR1-related protein [Candidatus Puniceispirillum marinum IMCC1322] Length = 219 Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust. Identities = 45/175 (25%), Positives = 78/175 (44%), Gaps = 31/175 (17%) Query: 221 KIVILGHSNAGKSSLFNAL-AKKDVAIVTDIPGTTRDVLTIDL-------DLEGYLVKIS 272 +I G SN GKSSL NAL ++ +A + PG TR ++ DL DL GY + Sbjct: 46 EICFAGRSNVGKSSLVNALTGRRMLARTSQTPGRTRQLIFFDLGQRLGLVDLPGYGYASA 105 Query: 273 DTAGIRETDDIVEK-----EGIKRTFLEVE--------NADLILLLKE-------INSKK 312 I + K + ++R FL ++ +++++ LL E + +K Sbjct: 106 PKTDIEAWTKLTRKFLAGRQSLQRVFLLIDARRGVGKGDSEIMKLLDESAVSWAAVLTKA 165 Query: 313 EISFPKNIDFIFIGTKSDLYSTYTEEYDHLI--SSFTGEGLEELINKIKSILSNK 365 + P+ ++ + T++ + +T+ Y L SS G+G+E L I K Sbjct: 166 DKLKPEALEKVCRATEATV-ATHVAAYPELFVTSSQAGDGIEHLRGHIAGFALQK 219 >gi|291530691|emb|CBK96276.1| Ras superfamily GTP-binding protein YlqF [Eubacterium siraeum 70/3] gi|291557800|emb|CBL34917.1| Ras superfamily GTP-binding protein YlqF [Eubacterium siraeum V10Sc8a] Length = 282 Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 3/79 (3%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 +KN +S +++ K I+ +++++G N GKSS N ++K V D PG TR Sbjct: 104 VKNLLSDLLAKRKAKGIVGQSLRVMVVGIPNVGKSSFINRISKAGKTKVEDRPGVTRGAQ 163 Query: 259 TIDLDLEGYLVKISDTAGI 277 + LD E +++ DT GI Sbjct: 164 WVSLDKE---LELLDTPGI 179 >gi|261839491|gb|ACX99256.1| ferrous iron transport protein B [Helicobacter pylori 52] Length = 642 Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust. Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKSSL NAL+ + V + G T D + + L + + I D G + Sbjct: 6 VALVGQPNVGKSSLINALSNAHLK-VGNFAGVTVDKMEVSLIHKERQITIIDLPGTYALN 64 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 D +E I + FLE DLIL Sbjct: 65 DFTTEEKITKDFLEKGQYDLIL 86 >gi|171911579|ref|ZP_02927049.1| hypothetical protein VspiD_10405 [Verrucomicrobium spinosum DSM 4136] Length = 431 Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust. Identities = 49/187 (26%), Positives = 91/187 (48%), Gaps = 30/187 (16%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGI--RET 280 I+G++NAGKSSL N L + +V + D T D T ++L +G + ++DT G R Sbjct: 214 IVGYTNAGKSSLLNKLTQSEV-LAEDKLFATLDTSTRRMELPDGQQLLLTDTVGFVRRLP 272 Query: 281 DDIVEKEGIKRTFLEVENADLIL-------------------LLKEINS--KKEISFPKN 319 D+V + + T E AD ++ +LKEI + K+ I Sbjct: 273 HDLV--QSFRATLEETTLADFLIHVVDASHPSAHTFYETTTEVLKEIGAGDKRVILVLNK 330 Query: 320 IDFIFIGTKSDLYSTYTEEYDHL-ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378 +D + +S L+ + D + IS TG+G+++L++K+ ++ ++ +L +P ++ Sbjct: 331 MD--LVTEESRLHELKNQFPDAVQISVQTGQGIDDLLHKLHEMVFDRVLRLTLRLPMNRL 388 Query: 379 HLYHLSQ 385 L L+ Sbjct: 389 DLLALAH 395 >gi|116511050|ref|YP_808266.1| GTP-binding protein YqeH [Lactococcus lactis subsp. cremoris SK11] gi|116106704|gb|ABJ71844.1| Predicted GTPase [Lactococcus lactis subsp. cremoris SK11] Length = 401 Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust. Identities = 34/103 (33%), Positives = 49/103 (47%), Gaps = 15/103 (14%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268 E R G + ++G +N GKS+L NA+ K +DV + PGTT D + I LD + L Sbjct: 195 EHYRRGRDVYVVGVTNVGKSTLINAIIKSASGSEDVITTSRFPGTTLDKIEIPLDEDSAL 254 Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311 + DT GI + +LE E+ + KEI K Sbjct: 255 I---DTPGIIHRGQMAH-------YLEPEDLKYVSPRKEIKPK 287 >gi|317470367|ref|ZP_07929758.1| ribosome biogenesis GTP-binding protein YsxC [Anaerostipes sp. 3_2_56FAA] gi|316902171|gb|EFV24094.1| ribosome biogenesis GTP-binding protein YsxC [Anaerostipes sp. 3_2_56FAA] Length = 204 Score = 43.9 bits (102), Expect = 0.059, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 57/121 (47%), Gaps = 11/121 (9%) Query: 221 KIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 ++ G SN GKSSL NAL +K A V+ PG T+ + +++ E Y V + + Sbjct: 25 EVAFAGKSNVGKSSLINALMNRKSYARVSAQPGKTQTINYYNINEELYYVDLPGYGYAKV 84 Query: 280 TDDIVEKEG--IKRTFLEVENADLILLLKEINSKKEISFPKNIDFI--------FIGTKS 329 T+ + E+ G I+R + L+ LL +I K + D+I I TKS Sbjct: 85 TESVKEQWGAMIERYLHTSKQLKLVFLLIDIRHKPSKNDVMMYDWIVHNGYHPVIIATKS 144 Query: 330 D 330 D Sbjct: 145 D 145 >gi|313901194|ref|ZP_07834682.1| ribosome biogenesis GTPase YqeH [Clostridium sp. HGF2] gi|312954152|gb|EFR35832.1| ribosome biogenesis GTPase YqeH [Clostridium sp. HGF2] Length = 360 Score = 43.9 bits (102), Expect = 0.059, Method: Compositional matrix adjust. Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 6/83 (7%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R G +V++G +NAGKS+L NA+ + PGTT D +I +EGY ++ DT G Sbjct: 160 RKGRDVVVMGMANAGKSTLLNAICDGVDLTTSRHPGTTLDFNSI--AMEGY--QLYDTPG 215 Query: 277 IRETDDIVEK--EGIKRTFLEVE 297 + D ++ +G+ +T + ++ Sbjct: 216 LTRMDSLLTHVDDGLLKTVIPLK 238 >gi|302879407|ref|YP_003847971.1| ferrous iron transport protein B [Gallionella capsiferriformans ES-2] gi|302582196|gb|ADL56207.1| ferrous iron transport protein B [Gallionella capsiferriformans ES-2] Length = 595 Score = 43.9 bits (102), Expect = 0.059, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 1/85 (1%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I +LG N GKS+LFN + A V + PG T ++L+ + L +V+I D GI + Sbjct: 3 RIALLGMPNTGKSTLFNRM-TGGAARVGNWPGITVELLSGKILLGADMVEIIDLPGIYDL 61 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 + E + R FL DL L++ Sbjct: 62 HGFSDDEQVVRHFLHDNVPDLALVI 86 >gi|240145039|ref|ZP_04743640.1| GTP-binding protein Era [Roseburia intestinalis L1-82] gi|257202864|gb|EEV01149.1| GTP-binding protein Era [Roseburia intestinalis L1-82] gi|291535364|emb|CBL08476.1| GTP-binding protein Era [Roseburia intestinalis M50/1] gi|291538175|emb|CBL11286.1| GTP-binding protein Era [Roseburia intestinalis XB6B4] Length = 302 Score = 43.9 bits (102), Expect = 0.059, Method: Compositional matrix adjust. Identities = 29/97 (29%), Positives = 52/97 (53%), Gaps = 2/97 (2%) Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVK 270 + E ++G+ + I+G N GKS+L N L + +AI ++ P TTR+ + T+ D+E + Sbjct: 1 MKENFKSGF-VTIIGRPNVGKSTLMNHLIGQKIAITSNKPQTTRNRIQTVYTDMERGQIV 59 Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307 DT GI + + + + + + D+IL L E Sbjct: 60 FLDTPGIHKAKNKLGEYMVNTAEHTLNEVDVILWLVE 96 >gi|224437865|ref|ZP_03658812.1| ferrous ion uptake system protein [Helicobacter cinaedi CCUG 18818] gi|313144314|ref|ZP_07806507.1| ferrous ion uptake system protein [Helicobacter cinaedi CCUG 18818] gi|313129345|gb|EFR46962.1| ferrous ion uptake system protein [Helicobacter cinaedi CCUG 18818] Length = 760 Score = 43.9 bits (102), Expect = 0.059, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 IV +G N GKSSL N + + V + G T + ++ +GY+++I D G + Sbjct: 6 IVCVGQPNVGKSSLVNKICGVHLK-VGNFTGVTIEKAEARIEYKGYILRIIDLPGTYALN 64 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 + +E I + FLE + D+IL Sbjct: 65 EYSFEEQITKQFLETQEYDVIL 86 >gi|167750815|ref|ZP_02422942.1| hypothetical protein EUBSIR_01797 [Eubacterium siraeum DSM 15702] gi|167656250|gb|EDS00380.1| hypothetical protein EUBSIR_01797 [Eubacterium siraeum DSM 15702] Length = 282 Score = 43.9 bits (102), Expect = 0.059, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 3/79 (3%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 +KN +S +++ K I+ +++++G N GKSS N ++K V D PG TR Sbjct: 104 VKNLLSDLLAKRKAKGIVGQSLRVMVVGIPNVGKSSFINRISKAGKTKVEDRPGVTRGAQ 163 Query: 259 TIDLDLEGYLVKISDTAGI 277 + LD E +++ DT GI Sbjct: 164 WVSLDKE---LELLDTPGI 179 >gi|126736284|ref|ZP_01752026.1| GTP-binding protein HflX [Roseobacter sp. CCS2] gi|126714105|gb|EBA10974.1| GTP-binding protein HflX [Roseobacter sp. CCS2] Length = 412 Score = 43.9 bits (102), Expect = 0.059, Method: Compositional matrix adjust. Identities = 49/183 (26%), Positives = 80/183 (43%), Gaps = 37/183 (20%) Query: 222 IVILGHSNAGKSSLFNALA-----KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 + ++G++NAGKS+LFN L KD+ T P + VL G V +SDT G Sbjct: 194 VALVGYTNAGKSTLFNRLTGAQVFAKDMLFATLDPTMRKIVLPT-----GDEVIMSDTVG 248 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF------------ 324 + T EV +ADLI+ +++I+ + +++ I Sbjct: 249 FISDLPTELVAAFRATLEEVLDADLIVHVRDISHPQTEEQAEDVHAILQSLGVAEEAPII 308 Query: 325 -IGTKSDLYS--------TYTEEYDHL--ISSFTGEGLEELI----NKIKSILSNKFKKL 369 + K+DL T D L +S+ TGEG++ L+ +K+K S + L Sbjct: 309 EVWNKTDLLEGDARDAVLTQAARTDDLFAVSAITGEGMDPLLAAIPDKLKDPRSEEHLSL 368 Query: 370 PFS 372 PF+ Sbjct: 369 PFA 371 >gi|313900792|ref|ZP_07834282.1| hydrogenase maturation GTPase HydF [Clostridium sp. HGF2] gi|312954212|gb|EFR35890.1| hydrogenase maturation GTPase HydF [Clostridium sp. HGF2] Length = 396 Score = 43.5 bits (101), Expect = 0.059, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 57/101 (56%), Gaps = 3/101 (2%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280 I I G N+GKS+L NA+ K+ V+ V+ + GTT D + ++L G V DTAG + Sbjct: 14 IGIFGKRNSGKSTLLNAITKQKVSTVSPVAGTTTDPVVKAMELHGLGPVVFYDTAGFDDE 73 Query: 281 DDIVEKEGIKRTFLEVENADL-ILLLKEINSKKEISFPKNI 320 ++ +++T + D+ IL+ ++++ E+++ K + Sbjct: 74 GELGNLR-VEKTVEVTQKTDMAILVFRDMDISWEMTWYKKL 113 >gi|256825020|ref|YP_003148980.1| GTP-binding protein Era [Kytococcus sedentarius DSM 20547] gi|256688413|gb|ACV06215.1| GTP-binding protein Era [Kytococcus sedentarius DSM 20547] Length = 310 Score = 43.5 bits (101), Expect = 0.059, Method: Compositional matrix adjust. Identities = 44/184 (23%), Positives = 83/184 (45%), Gaps = 35/184 (19%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R G+ + +G NAGKS+L NAL + +AI ++ P TTR + + E + + DT G Sbjct: 12 RAGF-VCFVGRPNAGKSTLTNALVGQKIAITSNKPQTTRHTVRGIIGDEASQIVVVDTPG 70 Query: 277 IRETDDIVEK---EGIKRTFLEVENADLILLLKEINSK------------KEISFPKNID 321 + + ++ + + ++ T L+V D+I + K +E+ + Sbjct: 71 LHKPRTLLGQRLNDVVRETLLDV---DVIGFCMPADQKPGPGDKYIAAELEELRRGRRTP 127 Query: 322 FIFIGTKSDLYST-----------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLP 370 I I TK+DL S ++D ++ G E ++ ++ +++ +KLP Sbjct: 128 IIAIATKADLVSRDQLAEHLMAIDQLGDFDEIVPCSAVNG--EQLDVVRRLIT---EKLP 182 Query: 371 FSIP 374 S P Sbjct: 183 LSPP 186 >gi|22537804|ref|NP_688655.1| GTP-binding protein YqeH [Streptococcus agalactiae 2603V/R] gi|76786933|ref|YP_330278.1| GTP-binding protein YqeH [Streptococcus agalactiae A909] gi|77406588|ref|ZP_00783636.1| GTP-binding protein [Streptococcus agalactiae H36B] gi|22534697|gb|AAN00528.1|AE014267_11 GTP-binding protein [Streptococcus agalactiae 2603V/R] gi|76561990|gb|ABA44574.1| GTP-binding protein [Streptococcus agalactiae A909] gi|77174813|gb|EAO77634.1| GTP-binding protein [Streptococcus agalactiae H36B] Length = 372 Score = 43.5 bits (101), Expect = 0.059, Method: Compositional matrix adjust. Identities = 37/111 (33%), Positives = 53/111 (47%), Gaps = 22/111 (19%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268 E R+G + ++G +N GKS+L NA+ + +DV + PGTT D + I LD Y Sbjct: 158 EKYRHGQDVYVVGVTNVGKSTLINAIIREITGSRDVITTSRFPGTTLDKIEIPLDDGSY- 216 Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319 I DT GI + +L +N LK ++ KKEI PK Sbjct: 217 --IFDTPGIIHRHQMAH-------YLTAKN------LKYVSPKKEIK-PKT 251 >gi|296139514|ref|YP_003646757.1| GTP-binding proten HflX [Tsukamurella paurometabola DSM 20162] gi|296027648|gb|ADG78418.1| GTP-binding proten HflX [Tsukamurella paurometabola DSM 20162] Length = 479 Score = 43.5 bits (101), Expect = 0.060, Method: Compositional matrix adjust. Identities = 48/184 (26%), Positives = 78/184 (42%), Gaps = 38/184 (20%) Query: 211 KLGEIIRNGYKIV-ILGHSNAGKSSLFNALAKKDVAIVTDI-----PGTTRDVLTIDLDL 264 K G R+G V I G++NAGKSSL NAL V + + P T LT Sbjct: 240 KRGARRRSGVPAVAIAGYTNAGKSSLLNALTDAGVLVQNALFATLDPTTRHGTLT----- 294 Query: 265 EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL-------------------LL 305 +G V +DT G E + T EV +ADL++ +L Sbjct: 295 DGRDVVFTDTVGFVRHLPTQLVEAFRSTLEEVVDADLLVHVVDGSDPMPQRQIDAVRHVL 354 Query: 306 KEINSKKEISFPKNIDFIFIGTKSD------LYSTYTEEYDHLISSFTGEGLEELINKIK 359 +E+ ++E + P+ + I +D L E +S+ T EG++EL+ ++ Sbjct: 355 REVAGEREAALPRELLVINKTDAADPMVLAQLRVALPEAV--FVSAHTREGIDELMQRMT 412 Query: 360 SILS 363 +++ Sbjct: 413 DLIT 416 >gi|13358054|ref|NP_078328.1| GTP-binding protein [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|6899489|gb|AAF30903.1|AE002147_4 GTP-binding protein [Ureaplasma parvum serovar 3 str. ATCC 700970] Length = 304 Score = 43.5 bits (101), Expect = 0.060, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 39/66 (59%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273 E+I+ + I+G N GKS+L NA+ KK V+I+++ P TTR+ + + + + +D Sbjct: 4 EMIKKYGIVAIVGKPNVGKSTLINAIMKKKVSIISNKPQTTRNAVKEIYEDDESAIIFTD 63 Query: 274 TAGIRE 279 T G E Sbjct: 64 TPGFHE 69 >gi|332981267|ref|YP_004462708.1| small GTP-binding protein [Mahella australiensis 50-1 BON] gi|332698945|gb|AEE95886.1| small GTP-binding protein [Mahella australiensis 50-1 BON] Length = 186 Score = 43.5 bits (101), Expect = 0.061, Method: Compositional matrix adjust. Identities = 39/117 (33%), Positives = 58/117 (49%), Gaps = 5/117 (4%) Query: 201 NDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260 N+ S H S E I KI ++G N GKS +FN L K V V++ PGTT ++ Sbjct: 6 NNKSCHTSGN---EHIEGLPKIALVGTPNVGKSVIFNRLTGKYVT-VSNYPGTTVEISRG 61 Query: 261 DLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL-LLKEINSKKEISF 316 + +I DT G+ I E+E + R L E D++L ++ N K+ +SF Sbjct: 62 KGRIGDCEFEIIDTPGMYSLMPITEEERVARRLLLEEKPDVVLHIVDAKNIKRMLSF 118 >gi|290968422|ref|ZP_06559961.1| GTP-binding protein Era [Megasphaera genomosp. type_1 str. 28L] gi|290781418|gb|EFD94007.1| GTP-binding protein Era [Megasphaera genomosp. type_1 str. 28L] Length = 299 Score = 43.5 bits (101), Expect = 0.061, Method: Compositional matrix adjust. Identities = 48/200 (24%), Positives = 93/200 (46%), Gaps = 25/200 (12%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRET 280 + ++G N GKS+L N + ++ V+IV+D TTR+ +L I D G +V + DT GI + Sbjct: 11 VAVVGRPNVGKSTLINYIVRQKVSIVSDKAQTTRNRILCIYTDAAGQIVFL-DTPGIHKP 69 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKK---------EISFPKNIDFIFIG----- 326 + + + + + D +L L N KK +++ K F+ I Sbjct: 70 KHKLGEYMDAAAYQSLRDIDAVLFLVAGNEKKGPGDLFVAEKLNACKVPVFLLINKVDLL 129 Query: 327 TKSDLYSTYTEEYDHL--------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378 TK+++ T EY + +S+ TG+ + ++ ++K IL + P + + + Sbjct: 130 TKAEILQKIT-EYRSVYPFAGIIPVSARTGDNVATVMGELKKILPPGPQYFPEDMVTDQP 188 Query: 379 HLYHLSQTVRYLEMASLNEK 398 ++ +R + SL E+ Sbjct: 189 ERVLAAEIIREKLLLSLREE 208 >gi|241761662|ref|ZP_04759749.1| GTP-binding protein Era [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241373970|gb|EER63503.1| GTP-binding protein Era [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 306 Score = 43.5 bits (101), Expect = 0.061, Method: Compositional matrix adjust. Identities = 45/178 (25%), Positives = 83/178 (46%), Gaps = 33/178 (18%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTIDLDLEGYLVKISDTAGIRET 280 + I+G NAGKS+L NAL + +AI++ TTR ++ I L + ++ + DT GI Sbjct: 17 VAIVGAPNAGKSTLVNALVGQKIAIISPKAQTTRARLMGIALQDQTQILLV-DTPGIFTP 75 Query: 281 DDIVEKEGIKRTFLEVENADLIL---------------LLKEINSKKEISFPKNI--DFI 323 ++ + + E A+L+ L++ + ++KE PK I + + Sbjct: 76 KKRFDRAMVAAAWGSAEGANLVALVVDASSGLTRRIEPLVEAVAARKE---PKVIILNKV 132 Query: 324 FIGTKSD-------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374 I K++ LY E ++S+ TG+G+ +L K L++ + P+ P Sbjct: 133 DITPKAELLALAQKLYEAIKPEALFMVSATTGDGVADL----KRSLADMMPESPWHFP 186 >gi|237737545|ref|ZP_04568026.1| GTP-binding protein [Fusobacterium mortiferum ATCC 9817] gi|229419425|gb|EEO34472.1| GTP-binding protein [Fusobacterium mortiferum ATCC 9817] Length = 298 Score = 43.5 bits (101), Expect = 0.061, Method: Compositional matrix adjust. Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 2/94 (2%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+L N L + VAIV+D GTTRD + L+ DT GI + Sbjct: 6 IAVVGRPNVGKSTLINKLVSEKVAIVSDKAGTTRDNIKGILNFNDNQYIFIDTPGIHKAK 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 ++ + +++ D+IL + ++ +EIS Sbjct: 66 HLLGEYMTNSAIRVLKDVDVILFV--LDGSQEIS 97 >gi|312867215|ref|ZP_07727425.1| ribosome biogenesis GTPase YqeH [Streptococcus parasanguinis F0405] gi|311097344|gb|EFQ55578.1| ribosome biogenesis GTPase YqeH [Streptococcus parasanguinis F0405] Length = 368 Score = 43.5 bits (101), Expect = 0.062, Method: Compositional matrix adjust. Identities = 37/111 (33%), Positives = 52/111 (46%), Gaps = 22/111 (19%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268 E R G + ++G +N GKS+L NA+ + KD+ + PGTT D + I LD Y Sbjct: 158 EQYRKGRDVYVVGVTNVGKSTLINAIIQEITGDKDIITTSRFPGTTLDKIEIPLDDGSY- 216 Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319 I DT GI + +L +N LK ++ KKEI PK Sbjct: 217 --IYDTPGIIHRHQMAH-------YLTAKN------LKYVSPKKEIK-PKT 251 >gi|197105188|ref|YP_002130565.1| GTP-binding protein HflX [Phenylobacterium zucineum HLK1] gi|196478608|gb|ACG78136.1| GTP-binding protein HflX [Phenylobacterium zucineum HLK1] Length = 424 Score = 43.5 bits (101), Expect = 0.062, Method: Compositional matrix adjust. Identities = 43/170 (25%), Positives = 80/170 (47%), Gaps = 33/170 (19%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280 + ++G++NAGKS+LFN L + +V + D+ T D L L +G +SDT G Sbjct: 194 VALVGYTNAGKSTLFNRLTQAEV-LAQDMLFATLDPTLRMLKLPDGRPAILSDTVGF--I 250 Query: 281 DDIVEK--EGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF-------------- 324 D+ + E + T EV AD++L +++I S++ + +++ + Sbjct: 251 SDLPHELVEAFRATLEEVREADVVLHVRDIASEETEAQAQDVRTVLQRLGVDMDERRILE 310 Query: 325 IGTKSDLYSTYTEEYDH------------LISSFTGEGLEELINKIKSIL 362 + K DL E D L+S+ TGEG ++L+ + +++ Sbjct: 311 VWNKVDLLPA-DERQDAAGDARRAHPPAILVSAVTGEGCDDLLRAVGALV 359 >gi|297530500|ref|YP_003671775.1| GTP-binding proten HflX [Geobacillus sp. C56-T3] gi|297253752|gb|ADI27198.1| GTP-binding proten HflX [Geobacillus sp. C56-T3] Length = 415 Score = 43.5 bits (101), Expect = 0.062, Method: Compositional matrix adjust. Identities = 40/174 (22%), Positives = 79/174 (45%), Gaps = 17/174 (9%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAG 276 +++ ++G++NAGKS++FN L D ++ ++ T D LT L GY V ++DT G Sbjct: 195 QAFQVALVGYTNAGKSTIFNRLTAAD-SLEENLLFATLDPLTRKCVLPCGYTVLVTDTVG 253 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDFIF 324 + + T EV ADL+L + + + ++ + +I + Sbjct: 254 FIQDLPTTLVAAFRSTLEEVTEADLLLHVVDSSHPDYVAHERTVSRLLAELGASSIPMVT 313 Query: 325 IGTKSDLYSTY---TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375 + KSD ++ T +IS+ + ++ L ++ + + + SIPS Sbjct: 314 VYNKSDQKASEFIPTTTASIMISALSAADIDRLRYFLEEAVKQQMARYDVSIPS 367 >gi|260754027|ref|YP_003226920.1| GTP-binding protein Era [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258553390|gb|ACV76336.1| GTP-binding protein Era [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 306 Score = 43.5 bits (101), Expect = 0.062, Method: Compositional matrix adjust. Identities = 45/178 (25%), Positives = 83/178 (46%), Gaps = 33/178 (18%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTIDLDLEGYLVKISDTAGIRET 280 + I+G NAGKS+L NAL + +AI++ TTR ++ I L + ++ + DT GI Sbjct: 17 VAIVGAPNAGKSTLVNALVGQKIAIISPKAQTTRARLMGIALQDQTQILLV-DTPGIFTP 75 Query: 281 DDIVEKEGIKRTFLEVENADLIL---------------LLKEINSKKEISFPKNI--DFI 323 ++ + + E A+L+ L++ + ++KE PK I + + Sbjct: 76 KKRFDRAMVAAAWGSAEGANLVALVVDASSGLTRRIEPLVEAVAARKE---PKVIILNKV 132 Query: 324 FIGTKSD-------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374 I K++ LY E ++S+ TG+G+ +L K L++ + P+ P Sbjct: 133 DITPKAELLALAQKLYEAIKPEALFMVSATTGDGVADL----KRSLADMMPESPWHFP 186 >gi|145613534|ref|XP_363635.2| hypothetical protein MGG_01561 [Magnaporthe oryzae 70-15] gi|145020596|gb|EDK04725.1| hypothetical protein MGG_01561 [Magnaporthe oryzae 70-15] Length = 593 Score = 43.5 bits (101), Expect = 0.062, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 32/61 (52%), Gaps = 3/61 (4%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R + I+G+ N GKSSL NAL K VA V IPG T+ I L YL+ D G Sbjct: 301 RKQVSVGIIGYPNTGKSSLINALRGKKVATVAPIPGETKVWQYITLTKRMYLI---DCPG 357 Query: 277 I 277 I Sbjct: 358 I 358 >gi|282897592|ref|ZP_06305592.1| Small GTP-binding protein domain protein [Raphidiopsis brookii D9] gi|281197515|gb|EFA72411.1| Small GTP-binding protein domain protein [Raphidiopsis brookii D9] Length = 504 Score = 43.5 bits (101), Expect = 0.063, Method: Compositional matrix adjust. Identities = 69/275 (25%), Positives = 126/275 (45%), Gaps = 44/275 (16%) Query: 169 RSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEI----IRNGYKIVI 224 RS + A + + D + + + V + ++++++ + GEI R ++V+ Sbjct: 75 RSRVTAAQIPAVKSDAASTTLQAVRQQVAQIQDEVTRQALLSRTGEIEANLARGEIQVVV 134 Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK--ISDTAGIRETDD 282 G +AGK+SL NA+ + V V GTT+ T L L+G K I+DT GI E Sbjct: 135 FGTGSAGKTSLVNAIMGRMVGEVNAPMGTTKVGETYCLRLKGVERKILITDTPGILEAGI 194 Query: 283 I-VEKEGIKRTFLEVENADLILLLKEINSKKEISFP-KNIDFI-----FIGTKSDLYSTY 335 E+E + RT A+L+L + + + ++ P + + I + K+DLY Sbjct: 195 AGTEREHLARTL--ATEANLLLFVVDNDLRRSEYEPLRGLAEIGKRSLLVLNKTDLYK-- 250 Query: 336 TEEYDHLISSFTGEGLEELINK--IKSILSNK----------FKKLPFSIPSHKRHLYHL 383 E+ D ++ E +++ IN + +I +N F+ P +P KR Sbjct: 251 DEDKDAILIKLR-ERVKDYINHNDVVAIAANPQAVELEGGEIFRPEPEIVPLLKR----- 304 Query: 384 SQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGK 418 +A++ + G D+IA+N+ L S+ LG+ Sbjct: 305 --------IAAVLRAE-GEDLIADNILLQSLRLGE 330 >gi|167748794|ref|ZP_02420921.1| hypothetical protein ANACAC_03568 [Anaerostipes caccae DSM 14662] gi|167651764|gb|EDR95893.1| hypothetical protein ANACAC_03568 [Anaerostipes caccae DSM 14662] Length = 204 Score = 43.5 bits (101), Expect = 0.063, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 57/121 (47%), Gaps = 11/121 (9%) Query: 221 KIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 ++ G SN GKSSL NAL +K A V+ PG T+ + +++ E Y V + + Sbjct: 25 EVAFAGKSNVGKSSLINALMNRKSYARVSAQPGKTQTINYYNINEELYYVDLPGYGYAKV 84 Query: 280 TDDIVEKEG--IKRTFLEVENADLILLLKEINSKKEISFPKNIDFI--------FIGTKS 329 T+ + E+ G I+R + L+ LL +I K + D+I I TKS Sbjct: 85 TESVKEQWGAMIERYLHTSKQLKLVFLLIDIRHKPSKNDVMMYDWIVHNGYHPVIIATKS 144 Query: 330 D 330 D Sbjct: 145 D 145 >gi|307298535|ref|ZP_07578338.1| ferrous iron transport protein B [Thermotogales bacterium mesG1.Ag.4.2] gi|306915700|gb|EFN46084.1| ferrous iron transport protein B [Thermotogales bacterium mesG1.Ag.4.2] Length = 649 Score = 43.5 bits (101), Expect = 0.064, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 1/87 (1%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI +LG+ N GK+S+FNAL IV + PG T + T + L + V + D G Sbjct: 14 KIALLGNPNVGKTSIFNALTGSR-QIVANWPGVTVEKRTGVMKLANHTVDVVDLPGTYTL 72 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE 307 E I R FL E D+ L++ + Sbjct: 73 GATSLDERIARDFLINERPDVALVIGD 99 >gi|17064928|gb|AAL32618.1| putative protein [Arabidopsis thaliana] gi|28059086|gb|AAO29986.1| putative protein [Arabidopsis thaliana] gi|332646103|gb|AEE79624.1| GTP binding protein [Arabidopsis thaliana] Length = 660 Score = 43.5 bits (101), Expect = 0.064, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 36/61 (59%), Gaps = 6/61 (9%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVT-----DIPGTTRDVLTIDLDLEGYLVKISDTAG 276 + ++G NAGKS+L NAL+KKD A VT +PGTT +L I L K+ DT G Sbjct: 395 VWVIGAQNAGKSTLINALSKKDGAKVTRLTEAPVPGTTLGILKIGGILSAK-AKMYDTPG 453 Query: 277 I 277 + Sbjct: 454 L 454 >gi|49475305|ref|YP_033346.1| GTP-binding protein Era [Bartonella henselae str. Houston-1] gi|49238111|emb|CAF27318.1| GTP-binding protein era homolog [Bartonella henselae str. Houston-1] Length = 300 Score = 43.5 bits (101), Expect = 0.064, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 50/89 (56%), Gaps = 1/89 (1%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R+G+ +V++G NAGKS+L N L V+IVT TTR ++ + + + + DT G Sbjct: 8 RSGF-VVLIGMPNAGKSTLVNQLVGTKVSIVTHKVQTTRTLIRGIVIHDNAQIVLIDTPG 66 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL 305 + +E+ + + +NAD++L+L Sbjct: 67 VFSPHKRLERAMVSAAWGGAKNADVLLVL 95 >gi|319956465|ref|YP_004167728.1| GTP-binding protein era [Nitratifractor salsuginis DSM 16511] gi|319418869|gb|ADV45979.1| GTP-binding protein Era [Nitratifractor salsuginis DSM 16511] Length = 302 Score = 43.5 bits (101), Expect = 0.064, Method: Compositional matrix adjust. Identities = 24/88 (27%), Positives = 47/88 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G NAGKS+L N L + +A+V+ TR + I + + + DT G+ E + Sbjct: 16 VAVVGRPNAGKSTLLNHLVGEKLAMVSKKAQATRKRMNIIVMHDNAQIIFVDTPGLHEKE 75 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN 309 ++ K ++ + +ADLIL + ++ Sbjct: 76 KLLNKFMLEEALKAIGDADLILFIAPVS 103 >gi|308062012|gb|ADO03900.1| iron(II) transport protein [Helicobacter pylori Cuz20] Length = 642 Score = 43.5 bits (101), Expect = 0.064, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKSSL NAL+ + V + G T D + + L + + I D G + Sbjct: 6 VALVGQPNVGKSSLINALSNAHLK-VGNFAGVTVDKMEVSLIHKDRQITIIDLPGTYALN 64 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 D +E + + FLE DLIL Sbjct: 65 DFTTEEKVTKDFLEKGQYDLIL 86 >gi|298481814|ref|ZP_07000004.1| GTPase EngC protein 2 [Bacteroides sp. D22] gi|298272036|gb|EFI13607.1| GTPase EngC protein 2 [Bacteroides sp. D22] Length = 362 Score = 43.5 bits (101), Expect = 0.064, Method: Compositional matrix adjust. Identities = 41/117 (35%), Positives = 58/117 (49%), Gaps = 18/117 (15%) Query: 173 EADLDF---SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSN 229 +ADLDF S EE +++ SS+ I I + +L + I G +V +G S Sbjct: 160 KADLDFDRQSVEEQIKHISSQ-----IPVFFTSIHQLETIVRLRKSISEGETVVFVGSSG 214 Query: 230 AGKSSLFNALAKKDVAIVTDIP---GTTRDVLT----IDLDLEGYLVKISDTAGIRE 279 GKSSL NAL +K V + +DI G R T + +D G L+ DT G+RE Sbjct: 215 VGKSSLVNALCEKPVLLTSDISLSTGKGRHTSTRREMVLMDSSGVLI---DTPGVRE 268 >gi|15894928|ref|NP_348277.1| GTPase [Clostridium acetobutylicum ATCC 824] gi|15024610|gb|AAK79617.1|AE007674_6 Predicted GTPase with uncharacterized domain, ortholog of T.maritima (4980952) [Clostridium acetobutylicum ATCC 824] gi|325509065|gb|ADZ20701.1| GTPase with uncharacterized domain [Clostridium acetobutylicum EA 2018] Length = 411 Score = 43.5 bits (101), Expect = 0.064, Method: Compositional matrix adjust. Identities = 29/91 (31%), Positives = 54/91 (59%), Gaps = 4/91 (4%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280 I + G +N GKSS+ NAL +++A+V+++ GTT D + ++L V + DTAG+ + Sbjct: 15 IALFGKTNVGKSSVINALTSQEIALVSNVKGTTTDPVYKAMELLPLGPVMLIDTAGLDDI 74 Query: 281 DDIVE-KEGIKRTFLEVENADLILLLKEINS 310 D+ E + G +T + D+ +L+ ++ S Sbjct: 75 SDLGELRRG--KTLEVLSKTDVAILVFDVES 103 >gi|296117721|ref|ZP_06836305.1| GTP-binding protein [Corynebacterium ammoniagenes DSM 20306] gi|295969452|gb|EFG82693.1| GTP-binding protein [Corynebacterium ammoniagenes DSM 20306] Length = 525 Score = 43.5 bits (101), Expect = 0.065, Method: Compositional matrix adjust. Identities = 55/183 (30%), Positives = 80/183 (43%), Gaps = 33/183 (18%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRE 279 +I I G++NAGKSSL NAL V +V D T D T +L +G V ++DT G Sbjct: 279 QIAIAGYTNAGKSSLINALTGAGV-LVEDALFATLDPTTRKAELGDGRHVVLTDTVGFVR 337 Query: 280 TDDIVEKEGIKRTFLEVENADLIL---------LLKEINSKKEISF-----------PKN 319 E K T EV NADL+L LK+I + ++ + P+ Sbjct: 338 HLPTQLVEAFKSTLEEVFNADLMLHVVDGADPFPLKQIEAVNKVIYDIAKETGETPPPEI 397 Query: 320 IDFIFIGTKSDLYSTYTEEYDHL--------ISSFTGEGLEELINKIKSILSNKFKKLPF 371 I I DL E H+ +S+ TGEG+ EL +I+ L++ + Sbjct: 398 IVVNKIDAADDLALA---EIRHVLDRENVVYVSAATGEGISELTTRIELFLNSLDSHVQL 454 Query: 372 SIP 374 +P Sbjct: 455 LVP 457 >gi|319898693|ref|YP_004158786.1| GTP-binding protein Era [Bartonella clarridgeiae 73] gi|319402657|emb|CBI76203.1| GTP-binding protein Era [Bartonella clarridgeiae 73] Length = 300 Score = 43.5 bits (101), Expect = 0.065, Method: Compositional matrix adjust. Identities = 27/94 (28%), Positives = 52/94 (55%), Gaps = 1/94 (1%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R+G+ + ++G NAGKS+L N L ++IVT TTR ++ + + + + DT G Sbjct: 8 RSGF-VAVIGVPNAGKSTLVNQLVGTKISIVTHKVQTTRTLVRGIVIYDKTQIILIDTPG 66 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310 + +E+ + + +NAD++L+L ++ S Sbjct: 67 VFRPHKRLERAMVSAAWGGAKNADILLVLIDVQS 100 >gi|222151493|ref|YP_002560649.1| hypothetical protein MCCL_1246 [Macrococcus caseolyticus JCSC5402] gi|222120618|dbj|BAH17953.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 396 Score = 43.5 bits (101), Expect = 0.065, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 8/69 (11%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYL 268 E +R + ++G +N GKS+L N L +KDV + PGTT D++ I LD +L Sbjct: 186 ETLRANQDVYVVGTTNVGKSTLINKLIETSVGEKDVITTSHFPGTTLDLIDIPLDEHSFL 245 Query: 269 VKISDTAGI 277 DT GI Sbjct: 246 F---DTPGI 251 >gi|168063155|ref|XP_001783539.1| predicted protein [Physcomitrella patens subsp. patens] gi|162664926|gb|EDQ51628.1| predicted protein [Physcomitrella patens subsp. patens] Length = 522 Score = 43.5 bits (101), Expect = 0.065, Method: Compositional matrix adjust. Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 3/63 (4%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT--TRDVLTIDLDLEGYLVKISDTAGIR 278 K++++G N GKS+LFN L K+ A+V + P + TRDV L ++ DTAG+ Sbjct: 29 KVLLVGRPNVGKSALFNRLTKRREALVYNTPDSHVTRDVREGVAKLGDMRFRVMDTAGL- 87 Query: 279 ETD 281 ETD Sbjct: 88 ETD 90 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 2/76 (2%) Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272 E+ R ++ I G N GKS+L N+L ++ + PG TRD + ++ + E + + Sbjct: 238 AELKRVPMQLAIAGRPNVGKSTLLNSLLMEERVLTGPEPGLTRDSIRVEFEYENQKIFLV 297 Query: 273 DTAGIRETDDIVEKEG 288 DTAG + + KEG Sbjct: 298 DTAGWMQRKKL--KEG 311 >gi|25011748|ref|NP_736143.1| GTP-binding protein YqeH [Streptococcus agalactiae NEM316] gi|77414364|ref|ZP_00790520.1| GTP-binding protein [Streptococcus agalactiae 515] gi|24413288|emb|CAD47367.1| Unknown [Streptococcus agalactiae NEM316] gi|77159599|gb|EAO70754.1| GTP-binding protein [Streptococcus agalactiae 515] Length = 372 Score = 43.5 bits (101), Expect = 0.065, Method: Compositional matrix adjust. Identities = 37/110 (33%), Positives = 53/110 (48%), Gaps = 22/110 (20%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268 E R+G + ++G +N GKS+L NA+ + +DV + PGTT D + I LD Y Sbjct: 158 EKYRHGRDVYVVGVTNVGKSTLINAIIREITGSRDVITTSRFPGTTLDKIEIPLDDGSY- 216 Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK 318 I DT GI + +L +N LK ++ KKEI PK Sbjct: 217 --IFDTPGIIHRHQMAH-------YLTAKN------LKYVSPKKEIK-PK 250 >gi|262067524|ref|ZP_06027136.1| GTP-binding protein Era [Fusobacterium periodonticum ATCC 33693] gi|291378787|gb|EFE86305.1| GTP-binding protein Era [Fusobacterium periodonticum ATCC 33693] Length = 297 Score = 43.5 bits (101), Expect = 0.066, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 34/58 (58%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 I I+G N GKS+L N L + VAIV+D GTTRD + L+++ DT GI + Sbjct: 6 IAIVGRPNVGKSTLINKLVAEKVAIVSDKAGTTRDNIKGILNVKDNQYIFIDTPGIHK 63 >gi|56416939|ref|YP_154013.1| GTP-binding protein Era [Anaplasma marginale str. St. Maries] gi|222475305|ref|YP_002563722.1| GTP-binding protein ERA (era) [Anaplasma marginale str. Florida] gi|254995121|ref|ZP_05277311.1| GTP-binding protein Era [Anaplasma marginale str. Mississippi] gi|56388171|gb|AAV86758.1| GTP-binding protein ERA [Anaplasma marginale str. St. Maries] gi|222419443|gb|ACM49466.1| GTP-binding protein ERA (era) [Anaplasma marginale str. Florida] Length = 297 Score = 43.5 bits (101), Expect = 0.066, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 46/86 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G +NAGKS+L N L +IVT TTR + + + +DT G+ Sbjct: 12 VAVVGATNAGKSTLINELVGFKASIVTPKVHTTRVRMNAVRNDGNVQLVFTDTPGVFAPK 71 Query: 282 DIVEKEGIKRTFLEVENADLILLLKE 307 ++EK +K ++ + AD+++L+ E Sbjct: 72 TVLEKFLVKNAWMSIRGADVVVLVLE 97 >gi|297820508|ref|XP_002878137.1| GTP binding protein [Arabidopsis lyrata subsp. lyrata] gi|297323975|gb|EFH54396.1| GTP binding protein [Arabidopsis lyrata subsp. lyrata] Length = 642 Score = 43.5 bits (101), Expect = 0.066, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 36/61 (59%), Gaps = 6/61 (9%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVT-----DIPGTTRDVLTIDLDLEGYLVKISDTAG 276 + ++G NAGKS+L NAL+KKD A VT +PGTT +L I L K+ DT G Sbjct: 379 VWVIGAQNAGKSTLINALSKKDGAKVTRLTEAPVPGTTLGILRIGGILSAK-AKMYDTPG 437 Query: 277 I 277 + Sbjct: 438 L 438 >gi|158424703|ref|YP_001525995.1| GTP-binding protein [Azorhizobium caulinodans ORS 571] gi|158331592|dbj|BAF89077.1| GTP-binding protein [Azorhizobium caulinodans ORS 571] Length = 459 Score = 43.5 bits (101), Expect = 0.066, Method: Compositional matrix adjust. Identities = 47/174 (27%), Positives = 75/174 (43%), Gaps = 31/174 (17%) Query: 217 RNGYKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDT 274 R Y +V L G++NAGKS+LFN L + +V + D+ T D +DL G V +SDT Sbjct: 219 RVPYPVVALVGYTNAGKSTLFNRLTQAEV-MAQDLLFATLDPTLRAVDLPHGTRVILSDT 277 Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK----------------------- 311 G + T EV AD+IL +++I+ Sbjct: 278 VGFISELPTQLVAAFRATLEEVIEADVILHVRDISHPDTDAQAADVKDVLTELGIDVEAG 337 Query: 312 -KEISFPKNIDFIFIGTKSDLYSTYT----EEYDHLISSFTGEGLEELINKIKS 360 + + ID + + L +T E L+S+ TGEG L+++I++ Sbjct: 338 GRLVEVWNKIDILPEAEREQLLNTAARAEPEARPELVSALTGEGAPALLDRIEA 391 >gi|144575090|gb|AAZ43799.2| GTP-binding protein ERA [Mycoplasma synoviae 53] Length = 295 Score = 43.5 bits (101), Expect = 0.066, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 2/85 (2%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIRET 280 + I+G NAGKSSL N + +++IVT + TTR+ +T + EG L + DT GI + Sbjct: 11 VTIVGRPNAGKSSLLNTILGYNLSIVTPVAQTTRNQIT-GVYTEGNLQIIFIDTPGIHKP 69 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 + + K F + DL+L L Sbjct: 70 KSLFGEHLNKEAFDTFSSVDLVLFL 94 >gi|56552280|ref|YP_163119.1| GTP-binding protein Era [Zymomonas mobilis subsp. mobilis ZM4] gi|56543854|gb|AAV90008.1| GTP-binding protein Era [Zymomonas mobilis subsp. mobilis ZM4] Length = 306 Score = 43.5 bits (101), Expect = 0.066, Method: Compositional matrix adjust. Identities = 45/178 (25%), Positives = 83/178 (46%), Gaps = 33/178 (18%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTIDLDLEGYLVKISDTAGIRET 280 + I+G NAGKS+L NAL + +AI++ TTR ++ I L + ++ + DT GI Sbjct: 17 VAIVGAPNAGKSTLVNALVGQKIAIISPKAQTTRARLMGIALQDQTQILLV-DTPGIFTP 75 Query: 281 DDIVEKEGIKRTFLEVENADLIL---------------LLKEINSKKEISFPKNI--DFI 323 ++ + + E A+L+ L++ + ++KE PK I + + Sbjct: 76 KKRFDRAMVAAAWGSAEGANLVALVVDASSGLTRRIEPLVEAVAARKE---PKVIILNKV 132 Query: 324 FIGTKSD-------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374 I K++ LY E ++S+ TG+G+ +L K L++ + P+ P Sbjct: 133 DITPKAELLALAQKLYEAIKPEALFMVSATTGDGVADL----KHSLADMMPESPWHFP 186 >gi|241764501|ref|ZP_04762522.1| GTP-binding proten HflX [Acidovorax delafieldii 2AN] gi|241366085|gb|EER60682.1| GTP-binding proten HflX [Acidovorax delafieldii 2AN] Length = 375 Score = 43.5 bits (101), Expect = 0.067, Method: Compositional matrix adjust. Identities = 38/107 (35%), Positives = 57/107 (53%), Gaps = 8/107 (7%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTAG- 276 + I ++G++NAGKS+LFNAL K A D T D T L L G V +SDT G Sbjct: 186 FNISLVGYTNAGKSTLFNALVKAR-AYAADQLFATLDTTTRQLYLGEAGRSVSLSDTVGF 244 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI 323 IR+ + + + T E +ADL+L + + ++ FP+ ID + Sbjct: 245 IRDLPHGL-VDAFQATLQEAVDADLLLHVVDASNPH---FPEQIDQV 287 >gi|161507651|ref|YP_001577605.1| GTP-binding protein Era [Lactobacillus helveticus DPC 4571] gi|254783658|sp|A8YVM7|ERA_LACH4 RecName: Full=GTPase Era gi|160348640|gb|ABX27314.1| GTP-binding protein [Lactobacillus helveticus DPC 4571] Length = 301 Score = 43.5 bits (101), Expect = 0.067, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 70/164 (42%), Gaps = 26/164 (15%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + +LG N GKS+L N L + VAI ++ P TTR+ ++ + V DT GI + Sbjct: 11 VALLGRPNVGKSTLMNYLVGQKVAITSNKPQTTRNRISGIYTSDKMQVVFVDTPGIFKPH 70 Query: 282 DIVEKEGIKRTFLEVENADLILLLKE-----------INSKKEISFPKNIDFIFIGTKSD 330 ++ K + + + DL+L + E N KE+ P F+ I Sbjct: 71 SKLDDYMDKASLSSLNDVDLVLFMVEPEEIGKGDQYIANLLKEVKVPV---FLVINKVDQ 127 Query: 331 LYST----YTEEYDHL--------ISSFTGEGLEELINKIKSIL 362 ++ + Y L IS+ G G+E+L+N I L Sbjct: 128 IHPNKLLLIMDSYHKLEGFKEILPISATQGIGIEDLLNTINKYL 171 >gi|323705744|ref|ZP_08117317.1| ferrous iron transport protein B [Thermoanaerobacterium xylanolyticum LX-11] gi|323534962|gb|EGB24740.1| ferrous iron transport protein B [Thermoanaerobacterium xylanolyticum LX-11] Length = 604 Score = 43.5 bits (101), Expect = 0.067, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 10/83 (12%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL---VKISDTAGIRET 280 ++G+ N GK++LFN L + V + PG T + EG++ VKI D GI Sbjct: 14 LIGNPNVGKTTLFNLLTGLNQH-VGNWPGVTVE------KKEGFINDNVKIVDLPGIYAM 66 Query: 281 DDIVEKEGIKRTFLEVENADLIL 303 D +E I ++FLE N D IL Sbjct: 67 DTYSNEEKISKSFLESGNVDFIL 89 >gi|296328716|ref|ZP_06871231.1| GTP-binding protein Era [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296154153|gb|EFG94956.1| GTP-binding protein Era [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 296 Score = 43.5 bits (101), Expect = 0.067, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 44/84 (52%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+L N L + VAIV+D GTTRD + L+ + DT GI + Sbjct: 6 IAVVGRPNVGKSTLINKLVSEKVAIVSDKAGTTRDNIKGILNFKDNQYIFIDTPGIHKPQ 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + +++ D+IL L Sbjct: 66 HLLGEYMTNIAVKILKDVDIILFL 89 >gi|326803637|ref|YP_004321455.1| ribosome biogenesis GTP-binding protein YsxC [Aerococcus urinae ACS-120-V-Col10a] gi|326650781|gb|AEA00964.1| ribosome biogenesis GTP-binding protein YsxC [Aerococcus urinae ACS-120-V-Col10a] Length = 200 Score = 43.5 bits (101), Expect = 0.068, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 11/121 (9%) Query: 221 KIVILGHSNAGKSSLFNALAK-KDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS--DTAGI 277 +I + G SN GKSS N + K +A ++ PG T+ + +LD YLV + A + Sbjct: 26 EIALAGRSNVGKSSFINTMTNHKKIARISSKPGKTQQLNYYNLDNSLYLVDVPGYGYAKV 85 Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPKNID-----FIFIGTKS 329 +T+ ++ + F++ EN + + LL + SK +I+ +D + I TK+ Sbjct: 86 SKTERSRWQKQLADYFIQRENLEAVFLLVDFRHRPSKDDINMKDFLDQCQVPYFIIATKA 145 Query: 330 D 330 D Sbjct: 146 D 146 >gi|294615006|ref|ZP_06694895.1| nitric-oxide synthase [Enterococcus faecium E1636] gi|291592137|gb|EFF23757.1| nitric-oxide synthase [Enterococcus faecium E1636] Length = 340 Score = 43.5 bits (101), Expect = 0.068, Method: Compositional matrix adjust. Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 15/100 (15%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 R+G + I+G +N GKS+L N + K +DV + PGTT D + I LD +L+ Sbjct: 162 RDGRDVYIVGVTNVGKSTLINQIIKNTAGVQDVITTSQFPGTTLDKIEIPLDDGHFLI-- 219 Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311 DT GI + +L ++ +I LKEI K Sbjct: 220 -DTPGIIHRHQMAH-------YLGKKDLRIIAPLKEIKPK 251 >gi|254506641|ref|ZP_05118782.1| GTP-binding protein [Vibrio parahaemolyticus 16] gi|219550514|gb|EED27498.1| GTP-binding protein [Vibrio parahaemolyticus 16] Length = 311 Score = 43.5 bits (101), Expect = 0.068, Method: Compositional matrix adjust. Identities = 33/104 (31%), Positives = 56/104 (53%), Gaps = 13/104 (12%) Query: 178 FSEEEDVQNF----SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233 F +E +V+ S + +N I+ L ++ H + ++G+ IR +I+G N GKS Sbjct: 75 FEKEHNVKAIAITTSQQAEVNKIMELVRKLAPH--REEIGKNIRT----MIMGIPNVGKS 128 Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 ++ NALA + +A+ + P TR I+L G + +SDT GI Sbjct: 129 TIINALAGRTIAVTGNQPAVTRRQQRINLQ-NGIV--LSDTPGI 169 >gi|169350470|ref|ZP_02867408.1| hypothetical protein CLOSPI_01238 [Clostridium spiroforme DSM 1552] gi|169292790|gb|EDS74923.1| hypothetical protein CLOSPI_01238 [Clostridium spiroforme DSM 1552] Length = 365 Score = 43.5 bits (101), Expect = 0.068, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 9/67 (13%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAK------KDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270 R+G + I+G +N GKSSL NAL K ++ ++ PGTT D++ I LD YL Sbjct: 158 RHGRDVYIVGVTNVGKSSLINALLKHYGTGDNNLITTSEFPGTTLDLIEIALDDHSYLY- 216 Query: 271 ISDTAGI 277 D+ GI Sbjct: 217 --DSPGI 221 >gi|1750108|gb|AAB41077.1| YnbA [Bacillus subtilis] Length = 334 Score = 43.5 bits (101), Expect = 0.068, Method: Compositional matrix adjust. Identities = 34/91 (37%), Positives = 49/91 (53%), Gaps = 3/91 (3%) Query: 217 RNGY-KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDT 274 +NG +I ++G++NAGKS+ FN L D + D+ T D +T + L GY V +SDT Sbjct: 168 KNGVLQIALVGYTNAGKSTWFNRLTSAD-SYEEDLLFATLDPMTRKMVLPSGYSVLLSDT 226 Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLL 305 G + + T EV+ ADLIL L Sbjct: 227 VGFIQDLPTTLIAAFRSTLEEVKEADLILHL 257 >gi|77408261|ref|ZP_00785004.1| GTP-binding protein [Streptococcus agalactiae COH1] gi|77173119|gb|EAO76245.1| GTP-binding protein [Streptococcus agalactiae COH1] gi|319745586|gb|EFV97887.1| GTP-binding protein [Streptococcus agalactiae ATCC 13813] Length = 372 Score = 43.5 bits (101), Expect = 0.068, Method: Compositional matrix adjust. Identities = 37/111 (33%), Positives = 53/111 (47%), Gaps = 22/111 (19%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268 E R+G + ++G +N GKS+L NA+ + +DV + PGTT D + I LD Y Sbjct: 158 EKYRHGRDVYVVGVTNVGKSTLINAIIREITGSRDVITTSRFPGTTLDKIEIPLDDGSY- 216 Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319 I DT GI + +L +N LK ++ KKEI PK Sbjct: 217 --IFDTPGIIHRHQMAH-------YLTAKN------LKYVSPKKEIK-PKT 251 >gi|82541411|ref|XP_724947.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL] gi|23479777|gb|EAA16512.1| probable GTP-binding protein engb-related [Plasmodium yoelii yoelii] Length = 236 Score = 43.5 bits (101), Expect = 0.068, Method: Compositional matrix adjust. Identities = 54/179 (30%), Positives = 77/179 (43%), Gaps = 42/179 (23%) Query: 221 KIVILGHSNAGKSSLFNALAK-KDVAIVTDIPGTTRDVLTIDL-------DLEGY-LVKI 271 +I I G SN GKSSL NAL ++VA + PG TR + +L DL GY K+ Sbjct: 33 QIAIFGRSNVGKSSLINALMNYREVAQASKTPGRTRHLFIYNLLNYISVVDLPGYGFAKV 92 Query: 272 S----DTAGIRETDDIVEKEGIKRTFLEVENADL------ILLLKEINSKKEISFPKNID 321 S D I + + + + +KR +E +L +LL ++ KNI Sbjct: 93 SKSLRDNWSILIEEYLNKAKNLKRALCLIECTELFTPYDYVLL--------DMFIMKNIP 144 Query: 322 FIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLP-FSIPSHKRH 379 F I TK D E L + KI SI+ N KK+ F+ HK++ Sbjct: 145 FQIIVTKID--------------KLKAEELHHAMIKIISIIENYKKKVKVFNENIHKKN 189 >gi|296876996|ref|ZP_06901040.1| ribosome biogenesis GTPase YqeH [Streptococcus parasanguinis ATCC 15912] gi|296432031|gb|EFH17834.1| ribosome biogenesis GTPase YqeH [Streptococcus parasanguinis ATCC 15912] Length = 368 Score = 43.5 bits (101), Expect = 0.068, Method: Compositional matrix adjust. Identities = 37/111 (33%), Positives = 52/111 (46%), Gaps = 22/111 (19%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268 E R G + ++G +N GKS+L NA+ + KD+ + PGTT D + I LD Y Sbjct: 158 EQYRKGRDVYVVGVTNVGKSTLINAIIQEITGDKDIITTSRFPGTTLDKIEIPLDDGSY- 216 Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319 I DT GI + +L +N LK ++ KKEI PK Sbjct: 217 --IYDTPGIIHRHQMAH-------YLTAKN------LKYVSPKKEIK-PKT 251 >gi|240047222|ref|YP_002960610.1| putative GTP-binding protein engB [Mycoplasma conjunctivae HRC/581] gi|239984794|emb|CAT04770.1| Probable GTP-binding protein engB [Mycoplasma conjunctivae] Length = 183 Score = 43.5 bits (101), Expect = 0.068, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 7/54 (12%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-------DVLTIDLDLEGY 267 +I +G SN GKSSL NALAK+ +A V+ PG T+ D I +DL GY Sbjct: 20 QIAFIGRSNVGKSSLINALAKQKIAKVSKHPGRTQLINYFKTDKNKIVVDLPGY 73 >gi|237715101|ref|ZP_04545582.1| ribosome-associated GTPase [Bacteroides sp. D1] gi|262408950|ref|ZP_06085495.1| ribosome small subunit-dependent GTPase A [Bacteroides sp. 2_1_22] gi|294643907|ref|ZP_06721695.1| putative ribosome small subunit-dependent GTPase A [Bacteroides ovatus SD CC 2a] gi|294809991|ref|ZP_06768665.1| putative ribosome small subunit-dependent GTPase A [Bacteroides xylanisolvens SD CC 1b] gi|229444934|gb|EEO50725.1| ribosome-associated GTPase [Bacteroides sp. D1] gi|262353161|gb|EEZ02256.1| ribosome small subunit-dependent GTPase A [Bacteroides sp. 2_1_22] gi|292640757|gb|EFF58987.1| putative ribosome small subunit-dependent GTPase A [Bacteroides ovatus SD CC 2a] gi|294442837|gb|EFG11630.1| putative ribosome small subunit-dependent GTPase A [Bacteroides xylanisolvens SD CC 1b] Length = 362 Score = 43.5 bits (101), Expect = 0.068, Method: Compositional matrix adjust. Identities = 41/117 (35%), Positives = 58/117 (49%), Gaps = 18/117 (15%) Query: 173 EADLDF---SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSN 229 +ADLDF S EE +++ SS+ I I + +L + I G +V +G S Sbjct: 160 KADLDFDRQSVEEQIKHISSQ-----IPVFFTSIHQLETIVRLRKSISEGETVVFVGSSG 214 Query: 230 AGKSSLFNALAKKDVAIVTDIP---GTTRDVLT----IDLDLEGYLVKISDTAGIRE 279 GKSSL NAL +K V + +DI G R T + +D G L+ DT G+RE Sbjct: 215 VGKSSLVNALCEKPVLLTSDISLSTGKGRHTSTRREMVLMDSSGVLI---DTPGVRE 268 >gi|296129768|ref|YP_003637018.1| ribosome-associated GTPase EngA [Cellulomonas flavigena DSM 20109] gi|296021583|gb|ADG74819.1| ribosome-associated GTPase EngA [Cellulomonas flavigena DSM 20109] Length = 515 Score = 43.5 bits (101), Expect = 0.068, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 33/58 (56%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 ++ ++G N GKSSL N + + +V D+ GTTRD + + L G DTAGIR Sbjct: 256 RVALVGRPNVGKSSLLNKVVGSERVVVDDLAGTTRDPVDELVALGGKPWVFVDTAGIR 313 Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust. Identities = 23/84 (27%), Positives = 43/84 (51%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+L N + + A+V D PG TRD ++ + G + DT G Sbjct: 83 LAVVGRPNVGKSTLVNRILGRREAVVEDNPGVTRDRVSYPAEWSGRRFTLVDTGGWEVDV 142 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++K ++ + ++ AD +L + Sbjct: 143 AGIDKRVAQQAEVAIDLADAVLFV 166 >gi|6735297|emb|CAB68124.1| putative protein [Arabidopsis thaliana] Length = 629 Score = 43.5 bits (101), Expect = 0.068, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 36/61 (59%), Gaps = 6/61 (9%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVT-----DIPGTTRDVLTIDLDLEGYLVKISDTAG 276 + ++G NAGKS+L NAL+KKD A VT +PGTT +L I L K+ DT G Sbjct: 379 VWVIGAQNAGKSTLINALSKKDGAKVTRLTEAPVPGTTLGILKIGGILSAK-AKMYDTPG 437 Query: 277 I 277 + Sbjct: 438 L 438 >gi|315658127|ref|ZP_07910999.1| ribosome biogenesis GTPase YqeH [Staphylococcus lugdunensis M23590] gi|315496456|gb|EFU84779.1| ribosome biogenesis GTPase YqeH [Staphylococcus lugdunensis M23590] Length = 366 Score = 43.5 bits (101), Expect = 0.069, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 68/152 (44%), Gaps = 21/152 (13%) Query: 217 RNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 R+ + I+G +N GKS+L N L +KDV + PGTT D++ I LD ++ Sbjct: 158 RDHDDVYIVGTTNVGKSTLINKLIELSVGEKDVVTTSRFPGTTLDMIDIPLDETSFMY-- 215 Query: 272 SDTAGI------------RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319 DT GI +E I+ K+ IK+ ++ N L L + +S K Sbjct: 216 -DTPGIIQEHQMTHLVTEKELKTIIPKKEIKQRVYQL-NESQTLFLGGLARIDYVSGGKR 273 Query: 320 IDFIFIGTKSDLYSTYTEEYDHLISSFTGEGL 351 F +++ T TE+ + L + G+ L Sbjct: 274 PLICFFSNDLNIHRTKTEKANELWKNQLGDLL 305 >gi|293406539|ref|ZP_06650465.1| conserved hypothetical protein [Escherichia coli FVEC1412] gi|291426545|gb|EFE99577.1| conserved hypothetical protein [Escherichia coli FVEC1412] Length = 111 Score = 43.5 bits (101), Expect = 0.069, Method: Composition-based stats. Identities = 25/58 (43%), Positives = 35/58 (60%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 I I+G S AGKSSL NAL + +V V+D+ TR+V L G+ + I+D G+ E Sbjct: 52 IGIMGKSGAGKSSLCNALFQGEVTPVSDVLAGTREVQRFRLSGHGHSMVITDLPGVGE 109 >gi|269866639|ref|XP_002652342.1| GTPase, predicted [Enterocytozoon bieneusi H348] gi|220062702|gb|EED41715.1| GTPase, predicted [Enterocytozoon bieneusi H348] Length = 158 Score = 43.5 bits (101), Expect = 0.069, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 65/135 (48%), Gaps = 8/135 (5%) Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV 284 +G+ N GKSSL N L K V V IPG T+ I L + YL+ D+ G+ +++ Sbjct: 9 VGYPNIGKSSLINILKNKQVCKVAPIPGETKVWQYITLMKDVYLI---DSPGVVPINNL- 64 Query: 285 EKEGIKRTFLEVEN-ADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI 343 KE + + VEN AD + EI ++ + K + I D + + ++Y L Sbjct: 65 -KEAVLHGAVRVENLADPDFYVAEIFNRAGFNEIKKLYCINFENIDDFFIEFAKKYKKLH 123 Query: 344 SSFTGEGLEELINKI 358 + G+ LI+KI Sbjct: 124 AG--GQPNINLISKI 136 >gi|150021370|ref|YP_001306724.1| ribosome biogenesis GTP-binding protein YsxC [Thermosipho melanesiensis BI429] gi|149793891|gb|ABR31339.1| small GTP-binding protein [Thermosipho melanesiensis BI429] Length = 191 Score = 43.5 bits (101), Expect = 0.069, Method: Compositional matrix adjust. Identities = 50/161 (31%), Positives = 78/161 (48%), Gaps = 29/161 (18%) Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV-------LTIDLDLEGY-LVKISDT 274 V +G SN GKS+L N L ++A ++ PG T V L +DL GY K+S+ Sbjct: 23 VFVGRSNVGKSTLLNTLTGTNIAKISKKPGKTASVNFYKINNLFYFVDLPGYGFAKVSEK 82 Query: 275 AGIRETDDIVEK------EGIKRTFL------EVENAD--LILLLKEINSKKEISFPKNI 320 IR I+E IK FL E++ D +I LK+++ + I K I Sbjct: 83 ERIR-WKQIIEMYFESRFWNIKIVFLLIDGRHELQKNDEQMINWLKDLDLQFSIILTK-I 140 Query: 321 DFIFIGTKSDLYSTYTEEY--DHLI---SSFTGEGLEELIN 356 D + + KS + S Y + +++I S+ T EG+ E++N Sbjct: 141 DKLKMSEKSKMISYYKRLFGENYIIIPYSAITKEGVNEILN 181 >gi|42565990|ref|NP_191277.3| GTP binding [Arabidopsis thaliana] Length = 644 Score = 43.5 bits (101), Expect = 0.069, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 36/61 (59%), Gaps = 6/61 (9%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVT-----DIPGTTRDVLTIDLDLEGYLVKISDTAG 276 + ++G NAGKS+L NAL+KKD A VT +PGTT +L I L K+ DT G Sbjct: 379 VWVIGAQNAGKSTLINALSKKDGAKVTRLTEAPVPGTTLGILKIGGILSAK-AKMYDTPG 437 Query: 277 I 277 + Sbjct: 438 L 438 >gi|56419859|ref|YP_147177.1| GTP-binding protein protease modulator [Geobacillus kaustophilus HTA426] gi|56379701|dbj|BAD75609.1| GTP-binding protein protease modulator [Geobacillus kaustophilus HTA426] Length = 415 Score = 43.5 bits (101), Expect = 0.069, Method: Compositional matrix adjust. Identities = 40/174 (22%), Positives = 79/174 (45%), Gaps = 17/174 (9%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAG 276 +++ ++G++NAGKS++FN L D ++ ++ T D LT L GY V ++DT G Sbjct: 195 QAFQVALVGYTNAGKSTIFNRLTAAD-SLEENLLFATLDPLTRKCVLPCGYTVLVTDTVG 253 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDFIF 324 + + T EV ADL+L + + + ++ + +I + Sbjct: 254 FIQDLPTTLVAAFRSTLEEVTEADLLLHVVDSSHPDYVAHERTVSRLLAELGASSIPMVT 313 Query: 325 IGTKSDLYSTY---TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375 + KSD ++ T +IS+ + ++ L ++ + + + SIPS Sbjct: 314 VYNKSDQKASEFIPTTTASIMISALSAADIDRLRYFLEEAVKQQMARYDVSIPS 367 >gi|304311327|ref|YP_003810925.1| hypothetical protein HDN1F_16900 [gamma proteobacterium HdN1] gi|301797060|emb|CBL45273.1| Conserved hypothetical protein [gamma proteobacterium HdN1] Length = 521 Score = 43.5 bits (101), Expect = 0.070, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 6/90 (6%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK-ISDTAGIRE 279 +I++LG +NAGKSSL NAL + A +P TT +++ L+ EG I DT G Sbjct: 288 RIMVLGRNNAGKSSLINALFGEVKAPTDTLPSTTDEIIPYQLEREGGTAALIFDTPGC-- 345 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEIN 309 + + + +K L +ADLIL + N Sbjct: 346 DNPQLSERALKTCVL---SADLILWVTPAN 372 >gi|225430700|ref|XP_002264259.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 435 Score = 43.5 bits (101), Expect = 0.070, Method: Compositional matrix adjust. Identities = 36/110 (32%), Positives = 57/110 (51%), Gaps = 15/110 (13%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R+GY + +LG N GKS+L N + + ++IVTD P TTR + Y + + DT G Sbjct: 136 RSGY-VAVLGKPNVGKSTLANQMIGQKLSIVTDKPQTTRHRILGICSGPEYQMILYDTPG 194 Query: 277 IRET-----DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNID 321 + E D ++ K T NAD +++L +++ KE P+ ID Sbjct: 195 VIEKKMHKLDSMMMKNVRSATI----NADCVVVL--VDACKE---PQKID 235 >gi|16330625|ref|NP_441353.1| GTP-binding protein HflX [Synechocystis sp. PCC 6803] gi|1653117|dbj|BAA18033.1| GTP-binding protein; HflX [Synechocystis sp. PCC 6803] Length = 534 Score = 43.5 bits (101), Expect = 0.070, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 70/130 (53%), Gaps = 12/130 (9%) Query: 201 NDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRD 256 N++ SH S+ + + + I+G++NAGKS+L NAL + D+ + + TTR Sbjct: 343 NELQSHRSRLRNQRQQQAVPTVAIVGYTNAGKSTLLNALTQADIYAADQLFATLDPTTRR 402 Query: 257 VLTIDLDLEGY-LVKISDTAGI--RETDDIVEKEGIKRTFLEVENADLILLLKEINS--- 310 + +D + + Y + ++DT G + D +V + + T EV ADL+L + +++ Sbjct: 403 LSLLDPENQTYHPILLTDTVGFIHKLPDALV--DAFRATLEEVTEADLLLQVVDLSDRAW 460 Query: 311 KKEISFPKNI 320 +++I+ NI Sbjct: 461 RRQIASVANI 470 >gi|77411900|ref|ZP_00788232.1| GTP-binding protein [Streptococcus agalactiae CJB111] gi|77162060|gb|EAO73039.1| GTP-binding protein [Streptococcus agalactiae CJB111] Length = 372 Score = 43.5 bits (101), Expect = 0.070, Method: Compositional matrix adjust. Identities = 37/111 (33%), Positives = 53/111 (47%), Gaps = 22/111 (19%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268 E R+G + ++G +N GKS+L NA+ + +DV + PGTT D + I LD Y Sbjct: 158 EKYRHGRDVYVVGVTNVGKSTLINAIIREITGSRDVITTSRFPGTTLDKIEIPLDDGSY- 216 Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319 I DT GI + +L +N LK ++ KKEI PK Sbjct: 217 --IFDTPGIIHRHQMAH-------YLTAKN------LKYVSPKKEIK-PKT 251 >gi|260655937|ref|ZP_05861406.1| GTP-binding protein Era [Jonquetella anthropi E3_33 E1] gi|260629553|gb|EEX47747.1| GTP-binding protein Era [Jonquetella anthropi E3_33 E1] Length = 303 Score = 43.5 bits (101), Expect = 0.070, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 45/88 (51%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 + G N GKSSL N L +++VT P TTRD + + E + DT G+ E + Sbjct: 12 LAGRPNVGKSSLVNRLLDFRLSVVTPKPQTTRDAILGLYNDEDCQIVFVDTPGVHEPEHR 71 Query: 284 VEKEGIKRTFLEVENADLILLLKEINSK 311 + + + R ++ AD+IL + I+ + Sbjct: 72 LGERLVDRALEALDEADVILYVVTIDDR 99 >gi|269866221|ref|XP_002652197.1| GTPase, predicted [Enterocytozoon bieneusi H348] gi|220062974|gb|EED41859.1| GTPase, predicted [Enterocytozoon bieneusi H348] Length = 155 Score = 43.5 bits (101), Expect = 0.070, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 65/135 (48%), Gaps = 8/135 (5%) Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV 284 +G+ N GKSSL N L K V V IPG T+ I L + YL+ D+ G+ +++ Sbjct: 6 VGYPNIGKSSLINILKNKQVCKVAPIPGETKVWQYITLMKDVYLI---DSPGVVPINNL- 61 Query: 285 EKEGIKRTFLEVEN-ADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI 343 KE + + VEN AD + EI ++ + K + I D + + ++Y L Sbjct: 62 -KEAVLHGAVRVENLADPDFYVAEIFNRAGFNEIKKLYCINFENIDDFFIEFAKKYKKLH 120 Query: 344 SSFTGEGLEELINKI 358 + G+ LI+KI Sbjct: 121 AG--GQPNINLISKI 133 >gi|23308879|ref|NP_601147.2| GTPase [Corynebacterium glutamicum ATCC 13032] gi|21324710|dbj|BAB99333.1| GTPases [Corynebacterium glutamicum ATCC 13032] Length = 486 Score = 43.5 bits (101), Expect = 0.070, Method: Compositional matrix adjust. Identities = 55/185 (29%), Positives = 77/185 (41%), Gaps = 39/185 (21%) Query: 221 KIVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 +I I G++NAGKSSL NA+ V A+ + TTR D G V +DT G Sbjct: 260 QIAIAGYTNAGKSSLINAMTGAGVLVENALFATLDPTTRKAELAD----GRHVVFTDTVG 315 Query: 277 IRETDDIVEKEGIKRTFLEVENADLIL---------LLKEIN-----------SKKEISF 316 E K T EV ADL+L LK+I+ S + Sbjct: 316 FVRHLPTSLVEAFKSTLEEVVEADLMLHVVDGSDPFPLKQIDAVNTVISDIVRSTGAVPP 375 Query: 317 PKNIDFIFIGTKSDLYSTYT-EEYDH------LISSFTGEGLEELINKIKSILSNKFKKL 369 P+ I + K D T E H +S+ TGEG++EL +I+ L+++ L Sbjct: 376 PE----IIVVNKIDQADPLTLAELRHAVDDVVFVSALTGEGIKELEARIELFLNSRDAHL 431 Query: 370 PFSIP 374 IP Sbjct: 432 LLKIP 436 >gi|323342238|ref|ZP_08082470.1| DNA mismatch repair protein MutS [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463350|gb|EFY08544.1| DNA mismatch repair protein MutS [Erysipelothrix rhusiopathiae ATCC 19414] Length = 835 Score = 43.5 bits (101), Expect = 0.071, Method: Compositional matrix adjust. Identities = 52/202 (25%), Positives = 89/202 (44%), Gaps = 48/202 (23%) Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA-IVTDIPGT-------- 253 + H +QG + +++ GYK+ I+ K + + K+DV IVT PGT Sbjct: 67 VPHHAAQGYIQKLVAAGYKVAIVEQVEDPKEA--KGIVKRDVVEIVT--PGTYFEMDDNE 122 Query: 254 TRDVLTIDLDLEGYLVKISDTA-----GIRETDDIVEKEGIKRTFLEVENADLILLLKEI 308 TR++ +I LDL + D IR +D VE +I +L++ Sbjct: 123 TREIASITLDLVYATIVSCDIVSGNLRAIRVMNDFVE---------------IIKVLQQF 167 Query: 309 NSKKEISFPKNIDFIFIG---TKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365 K EI ++ D I K+++Y +Y EE +E+ ++ +I + Sbjct: 168 QVK-EIVVSEHFDSKIINEIKNKTEIYVSYQEEL-----------ADEVQHQDPTIRKTQ 215 Query: 366 FKKLPFSIPSHKRHLYHLSQTV 387 + + + I +HKR L HLS+ V Sbjct: 216 ARLIQYLIYTHKRSLNHLSEVV 237 >gi|239637592|ref|ZP_04678564.1| ribosome biogenesis GTPase YqeH [Staphylococcus warneri L37603] gi|239596810|gb|EEQ79335.1| ribosome biogenesis GTPase YqeH [Staphylococcus warneri L37603] Length = 366 Score = 43.5 bits (101), Expect = 0.071, Method: Compositional matrix adjust. Identities = 37/149 (24%), Positives = 70/149 (46%), Gaps = 19/149 (12%) Query: 217 RNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 R+ + I+G +N GKS+L N L +KDV + PGTT D++ I LD + ++ Sbjct: 158 RDQEDVYIVGTTNVGKSTLINKLIELSVGEKDVVTTSRFPGTTLDMIDIPLDEKSFMF-- 215 Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFP--KNIDFI------ 323 DT GI ++ + K L + ++ + ++N + + F ID++ Sbjct: 216 -DTPGIIQSHQMTHFVTEKELKLVMPKKEIKQRVYQLNEGQTLFFGGLARIDYVSGGKRP 274 Query: 324 ---FIGTKSDLYSTYTEEYDHLISSFTGE 349 F + +++ T TE+ + L + G+ Sbjct: 275 LVCFFSNELNIHRTKTEKANELWKNHIGD 303 >gi|295087782|emb|CBK69305.1| Predicted GTPases [Bacteroides xylanisolvens XB1A] Length = 362 Score = 43.5 bits (101), Expect = 0.071, Method: Compositional matrix adjust. Identities = 41/117 (35%), Positives = 58/117 (49%), Gaps = 18/117 (15%) Query: 173 EADLDF---SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSN 229 +ADLDF S EE +++ SS+ I I + +L + I G +V +G S Sbjct: 160 KADLDFDRQSVEEQIKHISSQ-----IPVFFTSIHQLETIVRLRKSISEGETVVFVGSSG 214 Query: 230 AGKSSLFNALAKKDVAIVTDIP---GTTRDVLT----IDLDLEGYLVKISDTAGIRE 279 GKSSL NAL +K V + +DI G R T + +D G L+ DT G+RE Sbjct: 215 VGKSSLVNALCEKPVLLTSDISLSTGKGRHTSTRREMVLMDSSGVLI---DTPGVRE 268 >gi|291614750|ref|YP_003524907.1| ferrous iron transport protein B [Sideroxydans lithotrophicus ES-1] gi|291584862|gb|ADE12520.1| ferrous iron transport protein B [Sideroxydans lithotrophicus ES-1] Length = 595 Score = 43.5 bits (101), Expect = 0.071, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 1/85 (1%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +I +LG N GKS+LFN + A V + PG T ++L+ + L +V+I D GI + Sbjct: 3 RIALLGMPNTGKSTLFNRM-TGGAARVGNWPGITVELLSGKILLGSDMVEIIDLPGIYDL 61 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 + E + R FL DL L++ Sbjct: 62 HGFSDDEQVVRHFLHDNVPDLALVI 86 >gi|114320504|ref|YP_742187.1| GTP-binding protein Era [Alkalilimnicola ehrlichii MLHE-1] gi|114226898|gb|ABI56697.1| GTP-binding protein Era [Alkalilimnicola ehrlichii MLHE-1] Length = 315 Score = 43.5 bits (101), Expect = 0.071, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 2/92 (2%) Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274 +IR G+ + ++G N GKS+L N L + ++IVT P TTR + +G + DT Sbjct: 21 LIRCGH-VALVGRPNVGKSTLLNQLLGQKISIVTRKPQTTRQRILGVCHRDGAQIVYVDT 79 Query: 275 AGIRETDDIVEKEGIKRTFLE-VENADLILLL 305 G+ + D + RT + + DL++ L Sbjct: 80 PGLHQRRDKALNRYLNRTAANALADVDLVVFL 111 >gi|299750731|ref|XP_001829784.2| hypothetical protein CC1G_05993 [Coprinopsis cinerea okayama7#130] gi|298409044|gb|EAU92006.2| hypothetical protein CC1G_05993 [Coprinopsis cinerea okayama7#130] Length = 303 Score = 43.5 bits (101), Expect = 0.072, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIV-TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 +V+ G + AGKSS N LA +DV + G T L L +E +I DTAG+ ET Sbjct: 60 LVVFGETGAGKSSFINMLAGRDVTKASSSAKGVTSKNLEFSLKIENQDYRIWDTAGLNET 119 Query: 281 D 281 D Sbjct: 120 D 120 >gi|167973106|ref|ZP_02555383.1| ATP/GTP-binding protein [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|167974818|ref|ZP_02557095.1| ATP/GTP-binding protein [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|167976019|ref|ZP_02558296.1| ribosome biogenesis GTP-binding protein YsxC [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|167988518|ref|ZP_02570189.1| ATP/GTP-binding protein [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|168361987|ref|ZP_02695166.1| ATP/GTP-binding protein [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|195867678|ref|ZP_03079680.1| ribosome biogenesis GTP-binding protein YsxC [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198273611|ref|ZP_03206146.1| ribosome biogenesis GTP-binding protein YsxC [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209554309|ref|YP_002284666.1| ribosome biogenesis GTP-binding protein YsxC [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225550577|ref|ZP_03771526.1| ATP/GTP-binding protein [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225551103|ref|ZP_03772049.1| ATP/GTP-binding protein [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|238058989|sp|B5ZB76|ENGB_UREU1 RecName: Full=Probable GTP-binding protein EngB gi|171903533|gb|EDT49822.1| ATP/GTP-binding protein [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|184209057|gb|EDU06100.1| ATP/GTP-binding protein [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188018849|gb|EDU56889.1| ATP/GTP-binding protein [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188997724|gb|EDU66821.1| ATP/GTP-binding protein [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195659574|gb|EDX52954.1| ribosome biogenesis GTP-binding protein YsxC [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195660735|gb|EDX53990.1| ribosome biogenesis GTP-binding protein YsxC [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198249639|gb|EDY74420.1| ribosome biogenesis GTP-binding protein YsxC [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209541810|gb|ACI60039.1| ribosome biogenesis GTP-binding protein YsxC [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225378918|gb|EEH01283.1| ATP/GTP-binding protein [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|225379731|gb|EEH02093.1| ATP/GTP-binding protein [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 208 Score = 43.5 bits (101), Expect = 0.072, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 6/54 (11%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID------LDLEGY 267 ++I ++G SN GKSSL NALA + +A ++ PG T+ V D +DL GY Sbjct: 20 FEICVIGRSNVGKSSLINALANEKIARTSNTPGRTQLVNFFDFNSFRLVDLPGY 73 >gi|154509437|ref|ZP_02045079.1| hypothetical protein ACTODO_01968 [Actinomyces odontolyticus ATCC 17982] gi|153799071|gb|EDN81491.1| hypothetical protein ACTODO_01968 [Actinomyces odontolyticus ATCC 17982] Length = 412 Score = 43.5 bits (101), Expect = 0.074, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 1/86 (1%) Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250 E + + L+ D ++ I E R G+ + I+G N GKS+L NAL +AI + Sbjct: 90 EAMTSLASLREDAAATIEMPDFPEDFRAGF-VSIVGRPNVGKSTLTNALVGHKIAITSGR 148 Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAG 276 P TTR + + + Y + + DT G Sbjct: 149 PETTRHNIRGIVHGDNYQLVLVDTPG 174 >gi|312880131|ref|ZP_07739931.1| ribosome biogenesis GTP-binding protein YsxC [Aminomonas paucivorans DSM 12260] gi|310783422|gb|EFQ23820.1| ribosome biogenesis GTP-binding protein YsxC [Aminomonas paucivorans DSM 12260] Length = 208 Score = 43.5 bits (101), Expect = 0.074, Method: Compositional matrix adjust. Identities = 26/56 (46%), Positives = 30/56 (53%), Gaps = 9/56 (16%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID---------LDLEGY 267 +IVI G SN GKSSL NAL VA V+ PG TR + D +DL GY Sbjct: 25 EIVIAGRSNVGKSSLINALLGAKVAHVSGTPGKTRSINFFDVSATPPFCLVDLPGY 80 >gi|163852243|ref|YP_001640286.1| GTP-binding proten HflX [Methylobacterium extorquens PA1] gi|218531002|ref|YP_002421818.1| GTP-binding proten HflX [Methylobacterium chloromethanicum CM4] gi|163663848|gb|ABY31215.1| GTP-binding proten HflX [Methylobacterium extorquens PA1] gi|218523305|gb|ACK83890.1| GTP-binding proten HflX [Methylobacterium chloromethanicum CM4] Length = 471 Score = 43.5 bits (101), Expect = 0.074, Method: Compositional matrix adjust. Identities = 50/195 (25%), Positives = 84/195 (43%), Gaps = 45/195 (23%) Query: 217 RNGYKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--------EGY 267 R Y IV L G++NAGKS+LFNAL K +V +D+L LD G Sbjct: 225 RVPYPIVALVGYTNAGKSTLFNALTKAEV--------RAQDMLFATLDPTARATKLPHGE 276 Query: 268 LVKISDTAGI------------RET-DDIVEKE------GIKRTFLEVENADLILLLKEI 308 V +SDT G R T +D++E + + + + D+ +L+E+ Sbjct: 277 TVILSDTVGFISDLPTSLIAAFRATLEDVIEADILLHVRDVSHGDTQAQAEDVEGVLREL 336 Query: 309 ----NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH-----LISSFTGEGLEELINKIK 359 ++++ I D + G ++ L + L+S+ TGEGL EL +I+ Sbjct: 337 GIEADAERIIEVWNKADLLDEGERTRLLNLSAAHRGAGPAPILVSALTGEGLPELTERIE 396 Query: 360 SILSNKFKKLPFSIP 374 ++ ++P Sbjct: 397 GQVARARSTFAVTLP 411 >gi|310659078|ref|YP_003936799.1| GTP-binding protein era [Clostridium sticklandii DSM 519] gi|308825856|emb|CBH21894.1| GTP-binding protein Era [Clostridium sticklandii] Length = 305 Score = 43.5 bits (101), Expect = 0.075, Method: Compositional matrix adjust. Identities = 24/84 (28%), Positives = 47/84 (55%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+L N+L + +AI++D P TTR+ + + + + DT GI++ Sbjct: 16 VSIIGRPNVGKSTLMNSLVGEKIAIMSDKPQTTRNQIRAIYNDDEMQIVFMDTPGIQKPQ 75 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + +K + + + D+IL + Sbjct: 76 NRLGDYMLKVSHSSMRDTDVILFV 99 >gi|297379882|gb|ADI34769.1| ferrous iron transport protein B [Helicobacter pylori v225d] Length = 650 Score = 43.5 bits (101), Expect = 0.075, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKSSL NAL+ + V + G T D + + L + + I D G + Sbjct: 12 VALVGQPNVGKSSLINALSNAHLK-VGNFAGVTVDKMEVSLIHKERQITIIDLPGTYALN 70 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 D +E + + FLE DLIL Sbjct: 71 DFTTEEKVTKDFLEKGQYDLIL 92 >gi|188527468|ref|YP_001910155.1| iron(II) transport protein [Helicobacter pylori Shi470] gi|188143708|gb|ACD48125.1| iron(II) transport protein [Helicobacter pylori Shi470] Length = 648 Score = 43.5 bits (101), Expect = 0.075, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKSSL NAL+ + V + G T D + + L + + I D G + Sbjct: 12 VALVGQPNVGKSSLINALSNAHLK-VGNFAGVTVDKMEVSLIHKERQITIIDLPGTYALN 70 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 D +E + + FLE DLIL Sbjct: 71 DFTTEEKVTKDFLEKGQYDLIL 92 >gi|25028389|ref|NP_738443.1| putative GTP-binding protein HflX [Corynebacterium efficiens YS-314] gi|259507446|ref|ZP_05750346.1| GTP-binding protein [Corynebacterium efficiens YS-314] gi|23493674|dbj|BAC18643.1| putative GTP-binding protein HflX [Corynebacterium efficiens YS-314] gi|259164934|gb|EEW49488.1| GTP-binding protein [Corynebacterium efficiens YS-314] Length = 535 Score = 43.5 bits (101), Expect = 0.075, Method: Compositional matrix adjust. Identities = 56/182 (30%), Positives = 79/182 (43%), Gaps = 33/182 (18%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRE 279 +I I G++NAGKSSL NA+ V +V D T D T +L +G V +DT G Sbjct: 296 QIAIAGYTNAGKSSLINAMTGAGV-LVEDALFATLDPTTRKAELADGRHVVFTDTVGFIR 354 Query: 280 TDDIVEKEGIKRTFLEVENADLIL---------LLKE-----------INSKKEISFPKN 319 E K T EV ADL+L LK+ I + E P+ Sbjct: 355 HLPTSLVEAFKSTLEEVLEADLMLHVVDGSDPFPLKQIEAVNSVISDIIRTTGETPPPE- 413 Query: 320 IDFIFIGTKSDLYSTYT-EEYDH------LISSFTGEGLEELINKIKSILSNKFKKLPFS 372 I + K D T E H +S+ TGEG++EL +I+ L+++ +L Sbjct: 414 ---IIVVNKIDQADPLTLAELRHALDDVVFVSALTGEGIKELEARIELFLNSRDTRLTVL 470 Query: 373 IP 374 IP Sbjct: 471 IP 472 >gi|255263172|ref|ZP_05342514.1| GTP-binding protein HflX [Thalassiobium sp. R2A62] gi|255105507|gb|EET48181.1| GTP-binding protein HflX [Thalassiobium sp. R2A62] Length = 452 Score = 43.5 bits (101), Expect = 0.076, Method: Compositional matrix adjust. Identities = 47/170 (27%), Positives = 76/170 (44%), Gaps = 25/170 (14%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRET 280 + ++G++NAGKS+LFN L +V D+ T D +DL G + +SDT G Sbjct: 210 VALVGYTNAGKSTLFNRLTGAEV-FAKDMLFATLDPTMRKVDLPTGDEIILSDTVGFISD 268 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF----IGTKSDLYSTYT 336 + T EV +ADLIL +++I+S +++ I +G + L + Sbjct: 269 LPTELVASFRATLEEVLDADLILHVRDISSADTHEQSRDVMEILTKLGVGQDAPLLEVWN 328 Query: 337 E----EYD---------------HLISSFTGEGLEELINKIKSILSNKFK 367 + E D + SS TGEG++ L+ I IL+ K Sbjct: 329 KIDQVELDVRKGLNTASDRDDAIFVTSSVTGEGMDPLLAAISDILNAAMK 378 >gi|261419530|ref|YP_003253212.1| GTP-binding proten HflX [Geobacillus sp. Y412MC61] gi|319766346|ref|YP_004131847.1| GTP-binding proten HflX [Geobacillus sp. Y412MC52] gi|261375987|gb|ACX78730.1| GTP-binding proten HflX [Geobacillus sp. Y412MC61] gi|317111212|gb|ADU93704.1| GTP-binding proten HflX [Geobacillus sp. Y412MC52] Length = 415 Score = 43.5 bits (101), Expect = 0.076, Method: Compositional matrix adjust. Identities = 40/174 (22%), Positives = 79/174 (45%), Gaps = 17/174 (9%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAG 276 +++ ++G++NAGKS++FN L D ++ ++ T D LT L GY V ++DT G Sbjct: 195 QAFQVALVGYTNAGKSTIFNRLTAAD-SLEENLLFATLDPLTRKCVLPCGYTVLVTDTVG 253 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK------------NIDFIF 324 + + T EV ADL+L + + + ++ + +I + Sbjct: 254 FIQDLPTTLVAAFRSTLEEVTEADLLLHVVDSSHPDYVAHERTVSRLLAELGASSIPMVT 313 Query: 325 IGTKSDLYSTY---TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375 + KSD ++ T +IS+ + ++ L ++ + + + SIPS Sbjct: 314 VYNKSDQKASEFIPTTTASIMISALSAADIDRLRYFLEEAVKQQMTRYDVSIPS 367 >gi|118589883|ref|ZP_01547287.1| GTP binding protein-like [Stappia aggregata IAM 12614] gi|118437380|gb|EAV44017.1| GTP binding protein-like [Stappia aggregata IAM 12614] Length = 426 Score = 43.5 bits (101), Expect = 0.076, Method: Compositional matrix adjust. Identities = 53/221 (23%), Positives = 90/221 (40%), Gaps = 31/221 (14%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280 + ++G++NAGKS+LFN + + DV D+ T D + L G + +SDT G Sbjct: 202 VALVGYTNAGKSTLFNRMTESDV-FAKDLLFATLDPTLRKVALPHGKEIILSDTVGFISD 260 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI----------NSKKE--------------ISF 316 + T EV ADLIL +++I + KK I Sbjct: 261 LPTHLVAAFRATLEEVLEADLILHVRDISHPDTEAQAEDVKKTLTDLGVDALTGAPIIEV 320 Query: 317 PKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376 ID + + L +E +S+ TGEG+E+L ++ + ++ L IP Sbjct: 321 WNKIDCLDPAYREKLLEDAGDEGPIALSALTGEGIEQLYTRVDTFMAQHDDILTVKIPVA 380 Query: 377 KRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLG 417 L + +MA + E+ D + +R++ G Sbjct: 381 DGALL-----AKLYQMAEVLERTDAEDFVTAEVRVSDKQRG 416 >gi|284048360|ref|YP_003398699.1| GTP-binding proten HflX [Acidaminococcus fermentans DSM 20731] gi|283952581|gb|ADB47384.1| GTP-binding proten HflX [Acidaminococcus fermentans DSM 20731] Length = 604 Score = 43.5 bits (101), Expect = 0.076, Method: Compositional matrix adjust. Identities = 55/205 (26%), Positives = 89/205 (43%), Gaps = 33/205 (16%) Query: 198 FLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254 FL++ I K + RN ++ ++G++NAGKS+L N L D+ D T Sbjct: 359 FLEDQIRRMKGNRKQQQRARNKNEVKQVCLVGYTNAGKSTLLNTLTHSDI-YAQDQLFAT 417 Query: 255 RDVLTIDLDL-EGYLVKISDTAGI--RETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311 D T LDL +G ++DT G R +V K T V++AD LLL ++S Sbjct: 418 LDPTTRQLDLPDGSSCTLTDTVGFIQRLPHQLV--AAFKSTLEVVKDAD--LLLHVVDSS 473 Query: 312 KEISFPK--------------NIDFIFIGTKSDLYSTYT------EEYDH--LISSFTGE 349 E++ + + + + K D S + E+ D+ IS+ TGE Sbjct: 474 HELAREQTEAVYQVLQELGVTDKPILTVYNKVDRLSQHEGLRRRLEQEDNALCISARTGE 533 Query: 350 GLEELINKIKSILSNKFKKLPFSIP 374 G+ EL+ + +L + IP Sbjct: 534 GVPELLETLARLLGQDRVEADLCIP 558 >gi|256845852|ref|ZP_05551310.1| GTP-binding protein Era [Fusobacterium sp. 3_1_36A2] gi|256719411|gb|EEU32966.1| GTP-binding protein Era [Fusobacterium sp. 3_1_36A2] Length = 298 Score = 43.5 bits (101), Expect = 0.076, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 44/84 (52%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+L N L + VAIV+D GTTRD + L+ + DT GI + Sbjct: 6 IAVVGRPNVGKSTLINKLVSEKVAIVSDKAGTTRDNIKGILNFKDNQYIFIDTPGIHKPQ 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + +++ D+IL L Sbjct: 66 HLLGEYMTNIAVKILKDVDIILFL 89 >gi|237750688|ref|ZP_04581168.1| ferrous iron transporter B [Helicobacter bilis ATCC 43879] gi|229373778|gb|EEO24169.1| ferrous iron transporter B [Helicobacter bilis ATCC 43879] Length = 660 Score = 43.5 bits (101), Expect = 0.076, Method: Compositional matrix adjust. Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 1/83 (1%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+V++G N GKSSL NAL+ + V + G T + L+ + Y + + D G Sbjct: 5 KVVLVGQPNVGKSSLINALSNAKMR-VGNFSGVTLEKAEATLNYKDYTITMIDLPGTYSL 63 Query: 281 DDIVEKEGIKRTFLEVENADLIL 303 + +E + + FL+ E+ D+IL Sbjct: 64 NGYTTEERVCKDFLDNESYDIIL 86 >gi|225390164|ref|ZP_03759888.1| hypothetical protein CLOSTASPAR_03914 [Clostridium asparagiforme DSM 15981] gi|225043758|gb|EEG54004.1| hypothetical protein CLOSTASPAR_03914 [Clostridium asparagiforme DSM 15981] Length = 435 Score = 43.5 bits (101), Expect = 0.076, Method: Compositional matrix adjust. Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 3/58 (5%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTAGI 277 I G NAGKSS+ NA+ +D+A+V+D+ GTT D + ++L G +V I DT GI Sbjct: 14 IGFFGKRNAGKSSVLNAVTGQDLAVVSDVCGTTTDPVVKAMELLPLGPVVMI-DTPGI 70 >gi|85703310|ref|ZP_01034414.1| GTP-binding protein HflX [Roseovarius sp. 217] gi|85672238|gb|EAQ27095.1| GTP-binding protein HflX [Roseovarius sp. 217] Length = 424 Score = 43.5 bits (101), Expect = 0.076, Method: Compositional matrix adjust. Identities = 46/168 (27%), Positives = 77/168 (45%), Gaps = 26/168 (15%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD--VLTIDLDLEGYLVKISDTAGIRE 279 + ++G++NAGKS+LFN L DV + D+ T D + + L G V +SDT G Sbjct: 205 VALVGYTNAGKSTLFNRLTGADV-MAKDMLFATLDPTMRRVALPEGGPEVILSDTVGFIS 263 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF-------------IG 326 + T EV +ADLI +++I+ + +S +++ I I Sbjct: 264 DLPTELVAAFRATLEEVLSADLICHVRDISHPETVSQSRDVAAILESLGVSDKTPQIEIW 323 Query: 327 TKSDLYS--------TYTEEYDHL--ISSFTGEGLEELINKIKSILSN 364 K D T E D + IS+ TG+G+ +L+ I + L++ Sbjct: 324 NKIDQLEDEARAAAVTQAERQDDVLAISAITGQGINDLVAAIGAKLAD 371 >gi|220905798|ref|YP_002481109.1| GTP-binding protein Era [Cyanothece sp. PCC 7425] gi|219862409|gb|ACL42748.1| GTP-binding protein Era [Cyanothece sp. PCC 7425] Length = 315 Score = 43.5 bits (101), Expect = 0.077, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 73/164 (44%), Gaps = 24/164 (14%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 ++G+ + ++G N GKS+L N L + VAI + + TTR+ L L + DT G Sbjct: 22 KSGF-VALIGRPNVGKSTLMNQLIGQKVAITSPVAQTTRNRLRGILTTSTAQLIFVDTPG 80 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGT- 327 I + + + +K L + DL+L + + + K E+ K + +G Sbjct: 81 IHKPHHSLGEVLVKNATLAIAAVDLVLFIVDGSVKAGGGDRFVAEL-LQKAKTPVMVGVN 139 Query: 328 KSDLYS---TYTEEYDHLI----------SSFTGEGLEELINKI 358 KSD + T YD LI S+ TGEGL L ++ Sbjct: 140 KSDAQTDPDTLDRSYDSLIAEQGWPLVKFSALTGEGLAALQTQL 183 >gi|170728494|ref|YP_001762520.1| GTP-binding proten HflX [Shewanella woodyi ATCC 51908] gi|169813841|gb|ACA88425.1| GTP-binding proten HflX [Shewanella woodyi ATCC 51908] Length = 432 Score = 43.5 bits (101), Expect = 0.077, Method: Compositional matrix adjust. Identities = 53/191 (27%), Positives = 83/191 (43%), Gaps = 30/191 (15%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRE- 279 + ++G++NAGKS+LFN+L DV + T L LDL+ + ++DT G IR Sbjct: 200 VSLVGYTNAGKSTLFNSLTTSDVYAADQLFATLDPTLR-KLDLDDGSIILADTVGFIRHL 258 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSK-------------KEISFPKNIDFIFIG 326 D+V K T E ADL+L + + + + KEI ++I + + Sbjct: 259 PHDLV--AAFKATLQETREADLLLHIVDCHDENMGDNFEQVQLVLKEIG-AEDIPQLIVC 315 Query: 327 TKSDLYSTYTEEYDH---------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377 K DL + D+ +S+ +GL L I SI+ L IP+ Sbjct: 316 NKIDLLDEVNPKIDYDDEGVPIRVWVSAQKQQGLVLLKEAINSIVGKTTLSLNLEIPATA 375 Query: 378 RHLYHLSQTVR 388 H +L Q R Sbjct: 376 GH--YLGQLYR 384 >gi|15642826|ref|NP_227867.1| iron(II) transport protein B [Thermotoga maritima MSB8] gi|281412111|ref|YP_003346190.1| ferrous iron transport protein B [Thermotoga naphthophila RKU-10] gi|4980537|gb|AAD35145.1|AE001692_2 iron(II) transport protein B [Thermotoga maritima MSB8] gi|281373214|gb|ADA66776.1| ferrous iron transport protein B [Thermotoga naphthophila RKU-10] Length = 669 Score = 43.5 bits (101), Expect = 0.077, Method: Compositional matrix adjust. Identities = 50/167 (29%), Positives = 70/167 (41%), Gaps = 27/167 (16%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273 EI + K+ + G N GK+SLFNAL V + PG T + +GY + + D Sbjct: 11 EISQKIVKVALAGCPNVGKTSLFNALTGTK-QYVANWPGVTVEKKEGVFTYKGYTINLID 69 Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKE-INSKKE-------ISFPKNIDFIF- 324 G E I R +L +ADL++L+ + +N ++ + K + Sbjct: 70 LPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPEQSLYLLLEILEMEKKVILAMT 129 Query: 325 -------IGTKSDLYSTYTEEYDHL------ISSFTGEGLEELINKI 358 G K D Y E HL SS TGEGLEEL KI Sbjct: 130 AIDEAKKTGMKIDRY----ELQKHLGIPVVFTSSVTGEGLEELKEKI 172 >gi|305431551|ref|ZP_07400725.1| ferrous iron transporter B [Campylobacter coli JV20] gi|304445358|gb|EFM37997.1| ferrous iron transporter B [Campylobacter coli JV20] Length = 251 Score = 43.1 bits (100), Expect = 0.078, Method: Compositional matrix adjust. Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 1/83 (1%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 KI ++G N GKS L NAL K ++ V + G T + + + Y ++ D G Sbjct: 5 KIALIGQPNVGKSLLINALCKANMK-VGNFSGVTIEKASAKTFYKNYEFEVIDLPGTYSL 63 Query: 281 DDIVEKEGIKRTFLEVENADLIL 303 D EKE I R FL + D+I+ Sbjct: 64 DGYSEKEKITRHFLNQNDYDVIV 86 >gi|254168276|ref|ZP_04875122.1| GTPase, putative [Aciduliprofundum boonei T469] gi|197622785|gb|EDY35354.1| GTPase, putative [Aciduliprofundum boonei T469] Length = 317 Score = 43.1 bits (100), Expect = 0.078, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 77/156 (49%), Gaps = 28/156 (17%) Query: 222 IVILGHSNAGKSSLFNAL--AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR- 278 +VI G+ N GKS L + AK ++A P TT+ ++ ++++G V+I DT G+ Sbjct: 165 VVIAGYPNVGKSELVAKMSTAKPEIA---SYPFTTKGIVVGHMEIKGRRVQIVDTPGLLD 221 Query: 279 ---ETDDIVEKEGIKRTFLEVEN-ADLILLL------------KEINSKKEISFPKNIDF 322 E + +EKE I L ++ AD+I+ L +++ KEI I Sbjct: 222 RPLEKRNRIEKEAI----LALKYLADVIVFLLDPSETCGYSMDEQLKLLKEIKKDFGIPI 277 Query: 323 IFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKI 358 + + K DL T + IS+ TGEGL++L+ I Sbjct: 278 LEVENKVDLLRTDSPRMK--ISAKTGEGLDKLVENI 311 >gi|148270008|ref|YP_001244468.1| ferrous iron transport protein B [Thermotoga petrophila RKU-1] gi|147735552|gb|ABQ46892.1| ferrous iron transport protein B [Thermotoga petrophila RKU-1] Length = 667 Score = 43.1 bits (100), Expect = 0.078, Method: Compositional matrix adjust. Identities = 50/167 (29%), Positives = 70/167 (41%), Gaps = 27/167 (16%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273 EI + K+ + G N GK+SLFNAL V + PG T + +GY + + D Sbjct: 9 EISQKIVKVALAGCPNVGKTSLFNALTGTK-QYVANWPGVTVEKKEGVFTYKGYTINLID 67 Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKE-INSKKE-------ISFPKNIDFIF- 324 G E I R +L +ADL++L+ + +N ++ + K + Sbjct: 68 LPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPEQSLYLLLEILEMEKKVILAMT 127 Query: 325 -------IGTKSDLYSTYTEEYDHL------ISSFTGEGLEELINKI 358 G K D Y E HL SS TGEGLEEL KI Sbjct: 128 AIDEAKKTGMKIDRY----ELQKHLGIPVVFTSSVTGEGLEELKEKI 170 >gi|116670027|ref|YP_830960.1| small GTP-binding protein [Arthrobacter sp. FB24] gi|116610136|gb|ABK02860.1| small GTP-binding protein [Arthrobacter sp. FB24] Length = 522 Score = 43.1 bits (100), Expect = 0.078, Method: Compositional matrix adjust. Identities = 45/179 (25%), Positives = 78/179 (43%), Gaps = 27/179 (15%) Query: 222 IVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 + I G++NAGKSSL N L V A+ + T R T D G ++DT G Sbjct: 303 VAIAGYTNAGKSSLLNRLTDAGVLVENALFATLDPTVRKAETAD----GLGYTLADTVGF 358 Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEI---NSKKEISF---------PKNIDFIFI 325 + E + T EV ++DLIL + ++ + + +I+ + + I + Sbjct: 359 VRSLPTQLVEAFRSTLEEVADSDLILHVVDVSHPDPEGQIAAVRAVFSEVDARKVPEIIV 418 Query: 326 GTKSDLYSTYT------EEYDH-LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377 K+D + E H ++S+ TG+G+ EL+ I + K+ IP ++ Sbjct: 419 LNKADAADPFVVERLKQREPRHVVVSARTGQGIAELLKAISESIPRPSVKMELLIPYNR 477 >gi|108804275|ref|YP_644212.1| small GTP-binding protein domain-containing protein [Rubrobacter xylanophilus DSM 9941] gi|108765518|gb|ABG04400.1| Small GTP-binding protein domain [Rubrobacter xylanophilus DSM 9941] Length = 437 Score = 43.1 bits (100), Expect = 0.078, Method: Compositional matrix adjust. Identities = 39/156 (25%), Positives = 71/156 (45%), Gaps = 20/156 (12%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKSSL N + + A+V + PGTTRD + G + DT G+ + Sbjct: 10 VAVVGAPNVGKSSLVNRILGRRRAVVAEEPGTTRDRGYARAEWAGREFLLVDTGGMEPSA 69 Query: 282 DI-VEKEGIKRTFLEVENADLILLLKE----------------INSKKEISFPKNIDFIF 324 + +E + + VE AD+I+ L + + S+ E+ N Sbjct: 70 RMGLEALVTLQARIAVEEADVIVHLTDARTGPTEADAAIARELLRSRAEVVLAVN-KLDD 128 Query: 325 IGTKSDLYSTYT--EEYDHLISSFTGEGLEELINKI 358 +S+ Y Y+ E H +S+ G G+ +L++++ Sbjct: 129 PADESERYRFYSLGEGEPHPVSALHGLGVGDLLDEV 164 Score = 40.4 bits (93), Expect = 0.53, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 4/60 (6%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKIS--DTAGI 277 I I+G N GKS+L N L + A+V++ GTT DV+ +++ L+G + + DTAG+ Sbjct: 182 IAIIGRPNVGKSTLLNRLLGEQRAVVSEAAGTTTDVVESEVEVQLDGGRERFALLDTAGV 241 >gi|62390780|ref|YP_226182.1| GTPase [Corynebacterium glutamicum ATCC 13032] gi|41326118|emb|CAF20281.1| GTPase [Corynebacterium glutamicum ATCC 13032] Length = 509 Score = 43.1 bits (100), Expect = 0.078, Method: Compositional matrix adjust. Identities = 55/185 (29%), Positives = 77/185 (41%), Gaps = 39/185 (21%) Query: 221 KIVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 +I I G++NAGKSSL NA+ V A+ + TTR D G V +DT G Sbjct: 283 QIAIAGYTNAGKSSLINAMTGAGVLVENALFATLDPTTRKAELAD----GRHVVFTDTVG 338 Query: 277 IRETDDIVEKEGIKRTFLEVENADLIL---------LLKEIN-----------SKKEISF 316 E K T EV ADL+L LK+I+ S + Sbjct: 339 FVRHLPTSLVEAFKSTLEEVVEADLMLHVVDGSDPFPLKQIDAVNTVISDIVRSTGAVPP 398 Query: 317 PKNIDFIFIGTKSDLYSTYT-EEYDH------LISSFTGEGLEELINKIKSILSNKFKKL 369 P+ I + K D T E H +S+ TGEG++EL +I+ L+++ L Sbjct: 399 PE----IIVVNKIDQADPLTLAELRHAVDDVVFVSALTGEGIKELEARIELFLNSRDAHL 454 Query: 370 PFSIP 374 IP Sbjct: 455 LLKIP 459 >gi|330999189|ref|ZP_08322908.1| ribosome biogenesis GTPase Era [Parasutterella excrementihominis YIT 11859] gi|329575389|gb|EGG56933.1| ribosome biogenesis GTPase Era [Parasutterella excrementihominis YIT 11859] Length = 303 Score = 43.1 bits (100), Expect = 0.078, Method: Compositional matrix adjust. Identities = 24/52 (46%), Positives = 32/52 (61%), Gaps = 5/52 (9%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD----VLTID 261 E R+GY + ++G N GKS+L NAL + V+I + P TTRD VLT D Sbjct: 11 EDFRSGY-VAVIGRPNVGKSTLINALVGEKVSITSKKPQTTRDRIMGVLTTD 61 >gi|303257000|ref|ZP_07343014.1| GTP-binding protein Era [Burkholderiales bacterium 1_1_47] gi|302860491|gb|EFL83568.1| GTP-binding protein Era [Burkholderiales bacterium 1_1_47] Length = 303 Score = 43.1 bits (100), Expect = 0.078, Method: Compositional matrix adjust. Identities = 24/52 (46%), Positives = 32/52 (61%), Gaps = 5/52 (9%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD----VLTID 261 E R+GY + ++G N GKS+L NAL + V+I + P TTRD VLT D Sbjct: 11 EDFRSGY-VAVIGRPNVGKSTLINALVGEKVSITSKKPQTTRDRIMGVLTTD 61 >gi|237742515|ref|ZP_04572996.1| GTP binding protein [Fusobacterium sp. 4_1_13] gi|229430163|gb|EEO40375.1| GTP binding protein [Fusobacterium sp. 4_1_13] Length = 298 Score = 43.1 bits (100), Expect = 0.078, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 44/84 (52%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+L N L + VAIV+D GTTRD + L+ + DT GI + Sbjct: 6 IAVVGRPNVGKSTLINKLVSEKVAIVSDKAGTTRDNIKGILNFKDNQYIFIDTPGIHKPQ 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + +++ D+IL L Sbjct: 66 HLLGEYMTNIAVKILKDVDIILFL 89 >gi|254302672|ref|ZP_04970030.1| GTP-binding protein [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322864|gb|EDK88114.1| GTP-binding protein [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 296 Score = 43.1 bits (100), Expect = 0.078, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 44/84 (52%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+L N L + VAIV+D GTTRD + L+ + DT GI + Sbjct: 6 IAVVGRPNVGKSTLINKLVSEKVAIVSDKAGTTRDNIKGILNFKDNQYIFIDTPGIHKPQ 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + +++ D+IL L Sbjct: 66 HLLGEYMTNIAVKILKDVDIILFL 89 >gi|119872584|ref|YP_930591.1| small GTP-binding protein [Pyrobaculum islandicum DSM 4184] gi|119673992|gb|ABL88248.1| small GTP-binding protein [Pyrobaculum islandicum DSM 4184] Length = 372 Score = 43.1 bits (100), Expect = 0.078, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 1/85 (1%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++VI G+++AGK++LFN + ++ +V P T + + LDL G + ++DT G + Sbjct: 187 EVVITGYTSAGKTTLFNKMVGEN-KLVDGKPFATLETYSRALDLWGRRIVLTDTIGFIDD 245 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 V E T E+ +AD+ILL+ Sbjct: 246 LPPVLIESFHSTLQEIIDADIILLV 270 >gi|34764123|ref|ZP_00144997.1| GTP binding protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27886109|gb|EAA23411.1| GTP binding protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 298 Score = 43.1 bits (100), Expect = 0.078, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 44/84 (52%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+L N L + VAIV+D GTTRD + L+ + DT GI + Sbjct: 6 IAVVGRPNVGKSTLINKLVSEKVAIVSDKAGTTRDNIKGILNFKDNQYIFIDTPGIHKPQ 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + +++ D+IL L Sbjct: 66 HLLGEYMTNIAVKILKDVDIILFL 89 >gi|254392577|ref|ZP_05007754.1| GTP-binding protein Era [Streptomyces clavuligerus ATCC 27064] gi|294812543|ref|ZP_06771186.1| GTP-binding protein Era [Streptomyces clavuligerus ATCC 27064] gi|197706241|gb|EDY52053.1| GTP-binding protein Era [Streptomyces clavuligerus ATCC 27064] gi|294325142|gb|EFG06785.1| GTP-binding protein Era [Streptomyces clavuligerus ATCC 27064] Length = 317 Score = 43.1 bits (100), Expect = 0.079, Method: Compositional matrix adjust. Identities = 46/145 (31%), Positives = 71/145 (48%), Gaps = 12/145 (8%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTIDLDLEGYLVKISDTA 275 R+G+ + G NAGKS+L NAL + VAI ++ P TTR V I E L+ + DT Sbjct: 17 RSGFACFV-GRPNAGKSTLTNALVGQKVAITSNRPQTTRHTVRGIVHRPEAQLI-LVDTP 74 Query: 276 GIRETDDIVEK---EGIKRTFLEVE------NADLILLLKEINSKKEISFPKNIDFIFIG 326 G+ + ++ + + ++ T+ EV+ AD L + KE++ K + I Sbjct: 75 GLHKPRTLLGERLNDVVRTTWAEVDVIGFCLPADQKLGPGDRFIAKELAGIKKTPKVAIV 134 Query: 327 TKSDLYSTYTEEYDHLISSFTGEGL 351 TK+DL + T L S GE L Sbjct: 135 TKTDLVDSRTLAEQLLAVSRLGEEL 159 >gi|332638513|ref|ZP_08417376.1| GTPase YqeH [Weissella cibaria KACC 11862] Length = 380 Score = 43.1 bits (100), Expect = 0.080, Method: Compositional matrix adjust. Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 9/76 (11%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK------KDVAIVTDIPGTTRDVLTIDLDLEGY 267 E R G + ++G +N GKS+L N + K KDV + PGTT D + I LD + + Sbjct: 169 EKYREGRSVYVVGVTNVGKSTLINQIIKDATGDSKDVITTSRFPGTTLDRIEIPLDDDTF 228 Query: 268 LVKISDTAGIRETDDI 283 ++ DT GI D + Sbjct: 229 II---DTPGIIHQDQM 241 >gi|293189528|ref|ZP_06608248.1| GTP-binding protein Era [Actinomyces odontolyticus F0309] gi|292821618|gb|EFF80557.1| GTP-binding protein Era [Actinomyces odontolyticus F0309] Length = 412 Score = 43.1 bits (100), Expect = 0.080, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 1/86 (1%) Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250 E + + L+ D ++ I E R G+ + I+G N GKS+L NAL +AI + Sbjct: 90 EAMTSLASLREDAAATIEMPDFPEDFRAGF-VSIVGRPNVGKSTLTNALVGHKIAITSGR 148 Query: 251 PGTTRDVLTIDLDLEGYLVKISDTAG 276 P TTR + + + Y + + DT G Sbjct: 149 PETTRHNIRGIVHGDNYQLVLVDTPG 174 >gi|254561989|ref|YP_003069084.1| GTPase [Methylobacterium extorquens DM4] gi|254269267|emb|CAX25233.1| putative GTPase (HflX) [Methylobacterium extorquens DM4] Length = 471 Score = 43.1 bits (100), Expect = 0.080, Method: Compositional matrix adjust. Identities = 50/195 (25%), Positives = 84/195 (43%), Gaps = 45/195 (23%) Query: 217 RNGYKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--------EGY 267 R Y IV L G++NAGKS+LFNAL K +V +D+L LD G Sbjct: 225 RVPYPIVALVGYTNAGKSTLFNALTKAEV--------RAQDMLFATLDPTARATKLPHGE 276 Query: 268 LVKISDTAGI------------RET-DDIVEKE------GIKRTFLEVENADLILLLKEI 308 V +SDT G R T +D++E + + + + D+ +L+E+ Sbjct: 277 TVILSDTVGFISDLPTSLIAAFRATLEDVIEADILLHVRDVSHGDTQAQAEDVEGVLREL 336 Query: 309 ----NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH-----LISSFTGEGLEELINKIK 359 ++++ I D + G ++ L + L+S+ TGEGL EL +I+ Sbjct: 337 GIEADAERIIEVWNKADLLDEGERTRLLNLSAAHRGAGPAPILVSALTGEGLPELTERIE 396 Query: 360 SILSNKFKKLPFSIP 374 ++ ++P Sbjct: 397 GQVARARSTFAVTLP 411 >gi|258404222|ref|YP_003196964.1| GTP-binding protein Era [Desulfohalobium retbaense DSM 5692] gi|257796449|gb|ACV67386.1| GTP-binding protein Era [Desulfohalobium retbaense DSM 5692] Length = 312 Score = 43.1 bits (100), Expect = 0.080, Method: Compositional matrix adjust. Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 1/93 (1%) Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272 G R+G + I+G NAGKS+L N + VAIV+ P TTR+ ++ L + V Sbjct: 11 GGTYRSGL-VAIIGPPNAGKSTLLNQFLGQKVAIVSPKPQTTRNQISGILSTDEAQVVFL 69 Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 DT G+ ++ + + + + ++ +LL+ Sbjct: 70 DTPGVHKSGQRFNRYMVDAAWRALTASEAVLLV 102 >gi|145496666|ref|XP_001434323.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124401448|emb|CAK66926.1| unnamed protein product [Paramecium tetraurelia] Length = 415 Score = 43.1 bits (100), Expect = 0.080, Method: Compositional matrix adjust. Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 20/130 (15%) Query: 165 LTHIR-SFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDI-------SSHISQGKLGEII 216 L H+R F + ++ N SS + L + D+ S I KL E+I Sbjct: 186 LAHLRREFATVLFKANTQQQQSNLSSASIYKKTLSQRQDLADDLTSSSKAIGADKLLELI 245 Query: 217 RNGYK---------IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267 +N K + ++G+ N GKSS+ N+L + V+ PG T+ + + +D + Sbjct: 246 KNYSKNDGVKSSVTVGVIGYPNVGKSSVINSLKRSKACAVSSTPGFTKGLQEVVIDSQ-- 303 Query: 268 LVKISDTAGI 277 VKI D G+ Sbjct: 304 -VKIIDCPGV 312 >gi|317178953|dbj|BAJ56741.1| iron(II) transport protein [Helicobacter pylori F30] Length = 644 Score = 43.1 bits (100), Expect = 0.080, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKSSL NAL+ + V + G T D + + L + + I D G + Sbjct: 8 VALVGQPNVGKSSLINALSNAHLK-VGNFAGVTVDKMEVSLIHKERQITIIDLPGTYALN 66 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 D +E + + FLE DLIL Sbjct: 67 DFTTEEKVTKDFLEKGQYDLIL 88 >gi|238927458|ref|ZP_04659218.1| GTP-binding protein Era [Selenomonas flueggei ATCC 43531] gi|238884740|gb|EEQ48378.1| GTP-binding protein Era [Selenomonas flueggei ATCC 43531] Length = 299 Score = 43.1 bits (100), Expect = 0.080, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 33/61 (54%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+L NAL + +AI++D P TTR + L E + DT G+ Sbjct: 9 VAVIGRPNVGKSTLINALIGQKIAIMSDKPQTTRSRILCILTEEDAQIIFLDTPGVHRPQ 68 Query: 282 D 282 D Sbjct: 69 D 69 >gi|149025508|ref|ZP_01836441.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae SP23-BS72] gi|147929380|gb|EDK80377.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae SP23-BS72] Length = 283 Score = 43.1 bits (100), Expect = 0.080, Method: Compositional matrix adjust. Identities = 26/60 (43%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DVLTIDLDLEGYLVKISDTAGI 277 ++ +I+G NAGKS+L N LA K +A+V + PG T+ L + DLE I DT GI Sbjct: 122 FRTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQWLKTNKDLE-----ILDTPGI 176 >gi|110802047|ref|YP_699296.1| GTP-binding protein Era [Clostridium perfringens SM101] gi|168204746|ref|ZP_02630751.1| GTP-binding protein Era [Clostridium perfringens E str. JGS1987] gi|168208717|ref|ZP_02634342.1| GTP-binding protein Era [Clostridium perfringens B str. ATCC 3626] gi|168212948|ref|ZP_02638573.1| GTP-binding protein Era [Clostridium perfringens CPE str. F4969] gi|168215642|ref|ZP_02641267.1| GTP-binding protein Era [Clostridium perfringens NCTC 8239] gi|169343587|ref|ZP_02864586.1| GTP-binding protein Era [Clostridium perfringens C str. JGS1495] gi|182624448|ref|ZP_02952232.1| GTP-binding protein Era [Clostridium perfringens D str. JGS1721] gi|122956577|sp|Q0SRG1|ERA_CLOPS RecName: Full=GTPase Era gi|110682548|gb|ABG85918.1| GTP-binding protein Era [Clostridium perfringens SM101] gi|169298147|gb|EDS80237.1| GTP-binding protein Era [Clostridium perfringens C str. JGS1495] gi|170663559|gb|EDT16242.1| GTP-binding protein Era [Clostridium perfringens E str. JGS1987] gi|170713142|gb|EDT25324.1| GTP-binding protein Era [Clostridium perfringens B str. ATCC 3626] gi|170715652|gb|EDT27834.1| GTP-binding protein Era [Clostridium perfringens CPE str. F4969] gi|177910451|gb|EDT72828.1| GTP-binding protein Era [Clostridium perfringens D str. JGS1721] gi|182382082|gb|EDT79561.1| GTP-binding protein Era [Clostridium perfringens NCTC 8239] Length = 296 Score = 43.1 bits (100), Expect = 0.080, Method: Compositional matrix adjust. Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 1/91 (1%) Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274 + ++G+ I I+G N GKS+L N L + ++IV++ P TTR+ + L + Y + DT Sbjct: 1 MFKSGF-ITIVGRPNVGKSTLTNLLMGEKLSIVSNKPQTTRNNIQTILTGDDYQMIFVDT 59 Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLL 305 GI + + + + +++ DL+L L Sbjct: 60 PGIHKPKHKLGEYMVNSATDSIKDVDLVLFL 90 >gi|319946393|ref|ZP_08020630.1| GTP-binding protein [Streptococcus australis ATCC 700641] gi|319747361|gb|EFV99617.1| GTP-binding protein [Streptococcus australis ATCC 700641] Length = 368 Score = 43.1 bits (100), Expect = 0.081, Method: Compositional matrix adjust. Identities = 36/108 (33%), Positives = 51/108 (47%), Gaps = 22/108 (20%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 R G + ++G +N GKS+L NA+ + KD+ + PGTT D + I LD Y I Sbjct: 161 RKGRDVYVVGVTNVGKSTLINAIIQEITGDKDIITTSRFPGTTLDKIEIPLDDGSY---I 217 Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319 DT GI + +L +N LK ++ KKEI PK Sbjct: 218 YDTPGIIHRHQMAH-------YLTAKN------LKYVSPKKEIK-PKT 251 >gi|317180432|dbj|BAJ58218.1| iron(II) transport protein [Helicobacter pylori F32] Length = 644 Score = 43.1 bits (100), Expect = 0.081, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKSSL NAL+ + V + G T D + + L + + I D G + Sbjct: 8 VALVGQPNVGKSSLINALSNAHLK-VGNFAGVTVDKMEVSLIHKERQITIIDLPGTYALN 66 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 D +E + + FLE DLIL Sbjct: 67 DFTTEEKVTKDFLEKGQYDLIL 88 >gi|317056494|ref|YP_004104961.1| GTP-binding protein Era [Ruminococcus albus 7] gi|315448763|gb|ADU22327.1| GTP-binding protein Era [Ruminococcus albus 7] Length = 298 Score = 43.1 bits (100), Expect = 0.081, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 44/90 (48%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I G +NAGKSSL NAL + +A V+D P TTR +T L DT G+ + Sbjct: 7 VTIAGRANAGKSSLLNALVGEKIAAVSDKPQTTRTKITGVLTKGETQFVFMDTPGMHKAK 66 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSK 311 + + + + + D+I+ + + K Sbjct: 67 NKLSEHMVNTVNETITGVDMIIFMCDCTKK 96 >gi|291515778|emb|CBK64988.1| GTP-binding protein Era [Alistipes shahii WAL 8301] Length = 293 Score = 43.1 bits (100), Expect = 0.081, Method: Compositional matrix adjust. Identities = 30/99 (30%), Positives = 55/99 (55%), Gaps = 1/99 (1%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R+G+ + I+G+ N GKS+L NAL + ++I+T TTR + + E + + SDT G Sbjct: 3 RSGF-VNIIGNPNVGKSTLMNALVGEKLSIITSKAQTTRHRIMGIVSGEDFQIVYSDTPG 61 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 I + +++ +K + +AD+IL + + + E S Sbjct: 62 ILKPSYKLQESMMKFVTGALTDADVILYVTDTVEQSERS 100 >gi|257463636|ref|ZP_05628027.1| GTP-binding protein [Fusobacterium sp. D12] gi|317061187|ref|ZP_07925672.1| GTP-binding protein [Fusobacterium sp. D12] gi|313686863|gb|EFS23698.1| GTP-binding protein [Fusobacterium sp. D12] Length = 362 Score = 43.1 bits (100), Expect = 0.081, Method: Compositional matrix adjust. Identities = 29/99 (29%), Positives = 56/99 (56%), Gaps = 6/99 (6%) Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255 I+ KN+ + K+ NG ++++LG +N GKSS+ N L ++ V+ PGTT Sbjct: 136 IVSCKNNYGMNGILRKIHHFYPNGVEVLVLGVTNVGKSSVVNRLLGENRVTVSKYPGTT- 194 Query: 256 DVLTIDLDLEGYLVKISDTAGI----RETDDIVEKEGIK 290 +L+ ++ G +++ DT G+ R +D ++E++ +K Sbjct: 195 -LLSTFHEITGTKLRLIDTPGLIPGGRFSDLVIEEDQLK 232 >gi|227550575|ref|ZP_03980624.1| GTP-binding protein [Enterococcus faecium TX1330] gi|257888600|ref|ZP_05668253.1| GTP-binding protein YqeH [Enterococcus faecium 1,141,733] gi|257897022|ref|ZP_05676675.1| GTP-binding protein YqeH [Enterococcus faecium Com12] gi|257898963|ref|ZP_05678616.1| GTP-binding protein YqeH [Enterococcus faecium Com15] gi|293378715|ref|ZP_06624873.1| ribosome biogenesis GTPase YqeH [Enterococcus faecium PC4.1] gi|227180283|gb|EEI61255.1| GTP-binding protein [Enterococcus faecium TX1330] gi|257824654|gb|EEV51586.1| GTP-binding protein YqeH [Enterococcus faecium 1,141,733] gi|257833587|gb|EEV60008.1| GTP-binding protein YqeH [Enterococcus faecium Com12] gi|257836875|gb|EEV61949.1| GTP-binding protein YqeH [Enterococcus faecium Com15] gi|292642643|gb|EFF60795.1| ribosome biogenesis GTPase YqeH [Enterococcus faecium PC4.1] Length = 369 Score = 43.1 bits (100), Expect = 0.081, Method: Compositional matrix adjust. Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 15/100 (15%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 R+G + I+G +N GKS+L N + K +DV + PGTT D + I LD +L+ Sbjct: 162 RDGRDVYIVGVTNVGKSTLINQIIKNTAGVQDVITTSQFPGTTLDKIEIPLDDGHFLI-- 219 Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311 DT GI + +L ++ +I LKEI K Sbjct: 220 -DTPGIIHRHQMAH-------YLGKKDLRIIAPLKEIKPK 251 >gi|254517950|ref|ZP_05130006.1| ferrous iron transporter B [Clostridium sp. 7_2_43FAA] gi|226911699|gb|EEH96900.1| ferrous iron transporter B [Clostridium sp. 7_2_43FAA] Length = 626 Score = 43.1 bits (100), Expect = 0.081, Method: Compositional matrix adjust. Identities = 33/101 (32%), Positives = 50/101 (49%), Gaps = 13/101 (12%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD--VLTIDLDLEGYLVKISDTAGIRE 279 + ++G+ N GK+++FNAL V + PG T D I+ D+ K+ D GI Sbjct: 4 VALVGNPNTGKTTVFNALTGSK-QYVGNWPGVTIDKKFGFINKDM-----KLVDLPGIYA 57 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNI 320 D +E I R FLE E+ D+I IN I+ +N+ Sbjct: 58 MDTYSNEEKIARAFLEYEDVDVI-----INVVDSINLERNL 93 >gi|223044373|ref|ZP_03614407.1| ribosome biogenesis GTPase YqeH [Staphylococcus capitis SK14] gi|222442242|gb|EEE48353.1| ribosome biogenesis GTPase YqeH [Staphylococcus capitis SK14] Length = 366 Score = 43.1 bits (100), Expect = 0.081, Method: Compositional matrix adjust. Identities = 39/150 (26%), Positives = 66/150 (44%), Gaps = 21/150 (14%) Query: 216 IRNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270 +RN + ++G +N GKS+ N L +KDV + PGTT D++ I LD ++ Sbjct: 157 VRNNEDVYVVGTTNVGKSTFINKLIEISVGEKDVVTTSRFPGTTLDMIDIPLDETTFMY- 215 Query: 271 ISDTAGI------------RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK 318 DT GI +E I+ K+ IK+ ++ N + L + +S K Sbjct: 216 --DTPGIIQEHQMTNYVSDKELKTIMPKKEIKQRVYQL-NEEQTLFFGGLARIDYVSGGK 272 Query: 319 NIDFIFIGTKSDLYSTYTEEYDHLISSFTG 348 F +++ T TE+ + L + G Sbjct: 273 RSLVCFFSNDLNIHRTKTEKANELWKNQLG 302 >gi|330837425|ref|YP_004412066.1| GTP-binding protein Era-like-protein [Spirochaeta coccoides DSM 17374] gi|329749328|gb|AEC02684.1| GTP-binding protein Era-like-protein [Spirochaeta coccoides DSM 17374] Length = 294 Score = 43.1 bits (100), Expect = 0.082, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 2/85 (2%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-IDLDLEGYLVKISDTAGIRET 280 + I+G +AGKS+L N + + V+I P TTR+ + I D G LV +DT G + Sbjct: 6 VTIIGRPSAGKSTLVNTICEAKVSITARTPQTTRNAIKGIYTDSRGQLV-FTDTPGYHTS 64 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 D K +E++D+IL + Sbjct: 65 DKQFNKRLQDVALSALEDSDIILYV 89 >gi|308063524|gb|ADO05411.1| iron(II) transport protein [Helicobacter pylori Sat464] Length = 642 Score = 43.1 bits (100), Expect = 0.082, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKSSL NAL+ + V + G T D + + L + + I D G + Sbjct: 6 VALVGQPNVGKSSLINALSNAHLK-VGNFAGVTVDKMEVSLIHKERQITIIDLPGTYALN 64 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 D +E + + FLE DLIL Sbjct: 65 DFTTEEKVTKDFLEKGQYDLIL 86 >gi|261838078|gb|ACX97844.1| iron(II) (ferous iron) transport protein [Helicobacter pylori 51] Length = 642 Score = 43.1 bits (100), Expect = 0.082, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKSSL NAL+ + V + G T D + + L + + I D G + Sbjct: 6 VALVGQPNVGKSSLINALSNAHLK-VGNFAGVTVDKMEVSLIHKERQITIIDLPGTYALN 64 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 D +E + + FLE DLIL Sbjct: 65 DFTTEEKVTKDFLEKGQYDLIL 86 >gi|39935764|ref|NP_948040.1| GTP-binding protein Era [Rhodopseudomonas palustris CGA009] gi|39649617|emb|CAE28139.1| possible GTP-binding protein Era [Rhodopseudomonas palustris CGA009] Length = 308 Score = 43.1 bits (100), Expect = 0.082, Method: Compositional matrix adjust. Identities = 48/191 (25%), Positives = 84/191 (43%), Gaps = 32/191 (16%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R G+ + ++G N GKS+L NAL V IV+ TTR ++ + G + + DT G Sbjct: 14 RCGF-VALIGAPNVGKSTLVNALVGSKVTIVSRKVQTTRALIRGIVIESGSQIILVDTPG 72 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKE----INSKKE--------ISFPK-----N 319 I +++ +K + +AD++ +L + IN + E + PK Sbjct: 73 IFAPKRRLDRAMVKTAWSGAHDADIVCVLLDARAGINEQAEDILANLANVDRPKLLVLNK 132 Query: 320 IDFIFIGTKSDLYSTYTEE--YDH--LISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375 ID I L + +D ++S+ TG+G+++L + L+ + PF P Sbjct: 133 IDLIAREKLLALAQAANQRLAFDQTFMVSALTGDGVDDL----RKALAAQVPPGPFHYPE 188 Query: 376 HK------RHL 380 + RHL Sbjct: 189 DQMSDAPLRHL 199 >gi|331266921|ref|YP_004326551.1| GTP-binding protein [Streptococcus oralis Uo5] gi|326683593|emb|CBZ01211.1| GTP-binding protein [Streptococcus oralis Uo5] Length = 368 Score = 43.1 bits (100), Expect = 0.082, Method: Compositional matrix adjust. Identities = 37/111 (33%), Positives = 52/111 (46%), Gaps = 22/111 (19%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268 E R G + ++G +N GKS+L NA+ + +DV + PGTT D + I LD Y Sbjct: 158 EHYRKGRDVYVVGVTNVGKSTLINAIIQEITGDQDVITTSRFPGTTLDKIEIPLDDGAY- 216 Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319 I DT GI + +L +N LK ++ KKEI PK Sbjct: 217 --IYDTPGIIHRHQMAH-------YLTAKN------LKYVSPKKEIK-PKT 251 >gi|322388976|ref|ZP_08062546.1| GTP-binding protein [Streptococcus parasanguinis ATCC 903] gi|321144281|gb|EFX39689.1| GTP-binding protein [Streptococcus parasanguinis ATCC 903] Length = 368 Score = 43.1 bits (100), Expect = 0.082, Method: Compositional matrix adjust. Identities = 36/108 (33%), Positives = 51/108 (47%), Gaps = 22/108 (20%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 R G + ++G +N GKS+L NA+ + KD+ + PGTT D + I LD Y I Sbjct: 161 RKGRDVYVVGVTNVGKSTLINAIIQEITGDKDIITTSRFPGTTLDKIEIPLDDGSY---I 217 Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319 DT GI + +L +N LK ++ KKEI PK Sbjct: 218 YDTPGIIHRHQMAH-------YLTAKN------LKYVSPKKEIK-PKT 251 >gi|319404019|emb|CBI77607.1| GTP-binding protein Era [Bartonella rochalimae ATCC BAA-1498] Length = 300 Score = 43.1 bits (100), Expect = 0.082, Method: Compositional matrix adjust. Identities = 40/168 (23%), Positives = 78/168 (46%), Gaps = 22/168 (13%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R+G+ + ++G NAGKS+L N L V+IVT TTR ++ + + + + DT G Sbjct: 8 RSGF-VALIGVPNAGKSTLVNQLVGTKVSIVTHKVQTTRTLVRGIVIYDKTQIILIDTPG 66 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINS-----------------KKEISFPKN 319 + +E+ + + +NAD++L+L + S + +I Sbjct: 67 VFRPHKRLERAMVSAAWGGAKNADILLVLIDAQSGFSDEVDAMLDILKSIEQDKILVLNK 126 Query: 320 IDFIFIGTKSDLYSTYTEEYDHL----ISSFTGEGLEELINKIKSILS 363 ID + + L + +E + L IS+ G G ++L++ + +I+ Sbjct: 127 IDTVVKSSLLALTAKVSERVNFLQTFMISALNGSGCKDLLHYLSTIMQ 174 >gi|293392453|ref|ZP_06636774.1| conserved hypothetical protein [Serratia odorifera DSM 4582] gi|291425042|gb|EFE98250.1| conserved hypothetical protein [Serratia odorifera DSM 4582] Length = 291 Score = 43.1 bits (100), Expect = 0.082, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 3/85 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G + GKSSL NAL + +V V+D+ TRDVL + L + + + D G+ E++ Sbjct: 39 IGIMGKTGVGKSSLCNALFQGEVTPVSDVQACTRDVLRLRLSSGEHSLILVDLPGVGESE 98 Query: 282 DI-VEKEGIKRTFLEVENADLILLL 305 E E + R L DLIL + Sbjct: 99 QRDKEYESLYRHIL--PELDLILWV 121 >gi|271498983|ref|YP_003332008.1| GTP-binding protein HSR1-like protein [Dickeya dadantii Ech586] gi|270342538|gb|ACZ75303.1| GTP-binding protein HSR1-related protein [Dickeya dadantii Ech586] Length = 288 Score = 43.1 bits (100), Expect = 0.082, Method: Compositional matrix adjust. Identities = 33/109 (30%), Positives = 56/109 (51%), Gaps = 8/109 (7%) Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257 ++ I HI Q E + I I+G + AGKSSL NAL +V+ V+D+ TR+ Sbjct: 20 WVTAQIWQHIRQLTHYEPV-----IGIMGKTGAGKSSLCNALFAGEVSPVSDVSACTREP 74 Query: 258 LTIDLDLEGYLVKISDTAGIRETDDI-VEKEGIKRTFLEVENADLILLL 305 L L++ + + D G+ E++ +E + R ++ + DL+L L Sbjct: 75 LRFRLNVGERCMTLVDLPGVGESERRDIEYAAMYRQ--QLPHLDLVLWL 121 >gi|241894958|ref|ZP_04782254.1| GTP-binding protein [Weissella paramesenteroides ATCC 33313] gi|241871676|gb|EER75427.1| GTP-binding protein [Weissella paramesenteroides ATCC 33313] Length = 380 Score = 43.1 bits (100), Expect = 0.082, Method: Compositional matrix adjust. Identities = 38/138 (27%), Positives = 61/138 (44%), Gaps = 26/138 (18%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKK------DVAIVTDIPGTTRDVLTIDLDLEGYLVK 270 R G + ++G +N GKS+L N + K+ DV + PGTT D + I LD + ++ Sbjct: 172 RKGRSVYVVGVTNVGKSTLINQIIKEVTGDRTDVITTSRFPGTTLDRIEIPLDDDSNII- 230 Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSD 330 DT GI D + G+K LK ++ +KEI PK + + Sbjct: 231 --DTPGIIHQDQMAHYLGVKD-------------LKYVSPQKEIK-PKTFQ---LNAEQT 271 Query: 331 LYSTYTEEYDHLISSFTG 348 L+ +D++ TG Sbjct: 272 LFMGALARFDYIQGDRTG 289 >gi|19703615|ref|NP_603177.1| GTP-binding protein Era [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|25008422|sp|Q8RGM1|ERA_FUSNN RecName: Full=GTPase Era gi|19713721|gb|AAL94476.1| GTP-binding protein era [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 296 Score = 43.1 bits (100), Expect = 0.082, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 44/84 (52%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+L N L + VAIV+D GTTRD + L+ + DT GI + Sbjct: 6 IAVVGRPNVGKSTLINKLVSEKVAIVSDKAGTTRDNIKGILNFKDNQYIFIDTPGIHKPQ 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + +++ D+IL L Sbjct: 66 HLLGEYMTNIAVKILKDVDIILFL 89 >gi|288817738|ref|YP_003432085.1| GTP-binding protein [Hydrogenobacter thermophilus TK-6] gi|288787137|dbj|BAI68884.1| GTP-binding protein [Hydrogenobacter thermophilus TK-6] gi|308751337|gb|ADO44820.1| GTP-binding proten HflX [Hydrogenobacter thermophilus TK-6] Length = 370 Score = 43.1 bits (100), Expect = 0.083, Method: Compositional matrix adjust. Identities = 37/113 (32%), Positives = 62/113 (54%), Gaps = 6/113 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAG-IR 278 K+ ++G++N GKSSL L ++ V D+P T D T D+ L + V I+DT G IR Sbjct: 198 KVALVGYTNVGKSSLMRLLTGRE-TFVADMPFATLDTKTSDVYLSKDIKVLITDTVGFIR 256 Query: 279 E-TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSD 330 + +++ E K T E++ AD++L + +I+ KK + K + + K D Sbjct: 257 DLPHELI--ESFKATLEELQEADILLHVVDISDKKWLEKIKVVRKVLAELKVD 307 >gi|326441004|ref|ZP_08215738.1| GTPase Era [Streptomyces clavuligerus ATCC 27064] Length = 314 Score = 43.1 bits (100), Expect = 0.083, Method: Compositional matrix adjust. Identities = 46/145 (31%), Positives = 71/145 (48%), Gaps = 12/145 (8%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTIDLDLEGYLVKISDTA 275 R+G+ + G NAGKS+L NAL + VAI ++ P TTR V I E L+ + DT Sbjct: 14 RSGFACFV-GRPNAGKSTLTNALVGQKVAITSNRPQTTRHTVRGIVHRPEAQLI-LVDTP 71 Query: 276 GIRETDDIVEK---EGIKRTFLEVE------NADLILLLKEINSKKEISFPKNIDFIFIG 326 G+ + ++ + + ++ T+ EV+ AD L + KE++ K + I Sbjct: 72 GLHKPRTLLGERLNDVVRTTWAEVDVIGFCLPADQKLGPGDRFIAKELAGIKKTPKVAIV 131 Query: 327 TKSDLYSTYTEEYDHLISSFTGEGL 351 TK+DL + T L S GE L Sbjct: 132 TKTDLVDSRTLAEQLLAVSRLGEEL 156 >gi|187934969|ref|YP_001885107.1| GTP-binding protein Era [Clostridium botulinum B str. Eklund 17B] gi|226741198|sp|B2TMB9|ERA_CLOBB RecName: Full=GTPase Era gi|187723122|gb|ACD24343.1| GTP-binding protein Era [Clostridium botulinum B str. Eklund 17B] Length = 295 Score = 43.1 bits (100), Expect = 0.083, Method: Compositional matrix adjust. Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 1/91 (1%) Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274 + ++G+ + I+G N GKS+L N + + ++IV++ P TTR+ + L E Y + DT Sbjct: 1 MFKSGF-VTIVGRPNVGKSTLLNYIMGEKLSIVSNKPQTTRNNIQTILTGEDYQIVFVDT 59 Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLL 305 GI + + + + + DL+L L Sbjct: 60 PGIHKPKHKLGEYMVNSAKDSTNDVDLVLFL 90 >gi|145295845|ref|YP_001138666.1| GTPase [Corynebacterium glutamicum R] gi|140845765|dbj|BAF54764.1| hypothetical protein [Corynebacterium glutamicum R] Length = 509 Score = 43.1 bits (100), Expect = 0.083, Method: Compositional matrix adjust. Identities = 55/185 (29%), Positives = 77/185 (41%), Gaps = 39/185 (21%) Query: 221 KIVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 +I I G++NAGKSSL NA+ V A+ + TTR D G V +DT G Sbjct: 283 QIAIAGYTNAGKSSLINAMTGAGVLVENALFATLDPTTRKAELAD----GRHVVFTDTVG 338 Query: 277 IRETDDIVEKEGIKRTFLEVENADLIL---------LLKEIN-----------SKKEISF 316 E K T EV ADL+L LK+I+ S + Sbjct: 339 FVRHLPTSLVEAFKSTLEEVVEADLMLHVVDGSDPFPLKQIDAVNTVISDIVRSTGAVPP 398 Query: 317 PKNIDFIFIGTKSDLYSTYT-EEYDH------LISSFTGEGLEELINKIKSILSNKFKKL 369 P+ I + K D T E H +S+ TGEG++EL +I+ L+++ L Sbjct: 399 PE----IIVVNKIDQADPLTLAELRHAVDDVVFVSALTGEGIKELEARIELFLNSRDAHL 454 Query: 370 PFSIP 374 IP Sbjct: 455 LLKIP 459 >gi|50955206|ref|YP_062494.1| GTP-binding protein [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951688|gb|AAT89389.1| GTP-binding protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 489 Score = 43.1 bits (100), Expect = 0.083, Method: Compositional matrix adjust. Identities = 46/180 (25%), Positives = 78/180 (43%), Gaps = 35/180 (19%) Query: 222 IVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 + I G++NAGKSSL N + K V A+ + T R +T D G L ++DT G Sbjct: 273 VAIAGYTNAGKSSLLNRVTKAGVLVENALFATLDATVRRSVTAD----GRLYTLADTVGF 328 Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF------------PKNIDFIFI 325 E + T EV ++D+I+ + + + S ++I I + Sbjct: 329 VRNLPHQLVEAFRSTLEEVADSDVIVHVVDGSHPDPASQLATVRDVIGDVGARDIPEIVV 388 Query: 326 GTKSDLYSTYTEEYDHLI-----------SSFTGEGLEELINKIKSILSNKFKKLPFSIP 374 K+DL E + L+ S+ TGEG+EE++ I +L + ++ +P Sbjct: 389 FNKADLIP----EDERLVLRGLEPGAIFASARTGEGVEEVLAAIARLLPDPSVEVELIVP 444 >gi|15606865|ref|NP_214245.1| hypothetical protein aq_1815 [Aquifex aeolicus VF5] gi|6226469|sp|O67679|ENGB_AQUAE RecName: Full=Probable GTP-binding protein EngB gi|2984110|gb|AAC07648.1| hypothetical protein aq_1815 [Aquifex aeolicus VF5] Length = 183 Score = 43.1 bits (100), Expect = 0.083, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 29/50 (58%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 +V +G SN GKSSL N + VA V+ PG TR V LD + YLV + Sbjct: 21 VVFVGRSNVGKSSLLNMVVGSKVAKVSKTPGRTRAVNYFLLDKKLYLVDV 70 >gi|300781013|ref|ZP_07090867.1| GTP-binding protein HflX [Corynebacterium genitalium ATCC 33030] gi|300532720|gb|EFK53781.1| GTP-binding protein HflX [Corynebacterium genitalium ATCC 33030] Length = 505 Score = 43.1 bits (100), Expect = 0.084, Method: Compositional matrix adjust. Identities = 52/184 (28%), Positives = 73/184 (39%), Gaps = 33/184 (17%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRE 279 KI I G++NAGKSSL NA+ V +V D T D T +L +G V ++DT G Sbjct: 279 KIAIAGYTNAGKSSLINAMTDAGV-LVEDALFATLDPSTRRAELADGRTVVLTDTVGFVR 337 Query: 280 TDDIVEKEGIKRTFLEVENADLIL-------------------LLKEINSKKEISFPKNI 320 E K T EV ADL+L +L EI P I Sbjct: 338 HLPTQLVEAFKSTLEEVVGADLMLHVVDGSDPFPLKQIKAVNDVLAEITRDTGEEIPPEI 397 Query: 321 DFIFIGTKSDLYSTYTEEYDH----------LISSFTGEGLEELINKIKSILSNKFKKLP 370 I + + E H +S+ TGEG++EL +I+ L+ + Sbjct: 398 --IVVNKIDEADPVVLAELRHAFADSKHNVVFVSAVTGEGIDELEGRIEMFLNTLDAHVK 455 Query: 371 FSIP 374 +P Sbjct: 456 LLVP 459 >gi|332673534|gb|AEE70351.1| FeoB family ferrous iron (Fe2+) uptake protein [Helicobacter pylori 83] Length = 644 Score = 43.1 bits (100), Expect = 0.084, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKSSL NAL+ + V + G T D + + L + + I D G + Sbjct: 8 VALVGQPNVGKSSLINALSNAHLK-VGNFAGVTVDKMEVSLIHKERQITIIDLPGTYALN 66 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 D +E + + FLE DLIL Sbjct: 67 DFTTEEKVTKDFLEKGQYDLIL 88 >gi|183508428|ref|ZP_02957974.1| GTP-binding protein Era [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|182675835|gb|EDT87740.1| GTP-binding protein Era [Ureaplasma parvum serovar 14 str. ATCC 33697] Length = 300 Score = 43.1 bits (100), Expect = 0.084, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 35/58 (60%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 + I+G N GKS+L NA+ KK V+I+++ P TTR+ + + + + +DT G E Sbjct: 8 VAIVGKPNVGKSTLINAIMKKKVSIISNKPQTTRNAVKEIYEDDESAIIFTDTPGFHE 65 >gi|171920300|ref|ZP_02931650.1| GTP-binding protein Era [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|171902714|gb|EDT49003.1| GTP-binding protein Era [Ureaplasma parvum serovar 1 str. ATCC 27813] Length = 300 Score = 43.1 bits (100), Expect = 0.084, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 35/58 (60%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 + I+G N GKS+L NA+ KK V+I+++ P TTR+ + + + + +DT G E Sbjct: 8 VAIVGKPNVGKSTLINAIMKKKVSIISNKPQTTRNAVKEIYEDDESAIIFTDTPGFHE 65 >gi|148994934|ref|ZP_01823936.1| GTP-binding protein [Streptococcus pneumoniae SP9-BS68] gi|147926936|gb|EDK77982.1| GTP-binding protein [Streptococcus pneumoniae SP9-BS68] Length = 368 Score = 43.1 bits (100), Expect = 0.084, Method: Compositional matrix adjust. Identities = 48/174 (27%), Positives = 74/174 (42%), Gaps = 45/174 (25%) Query: 151 SGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQG 210 SG++S QW+ K H D+ + ++ + KEV++ I Sbjct: 118 SGKIS----QWLMKRAHEEGLRPVDVVLTSAQN--KHAIKEVIDKI-------------- 157 Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLE 265 E R G + ++G +N GKS+L NA+ + ++V + PGTT D + I LD Sbjct: 158 ---EHYRKGRDVYVVGVTNVGKSTLINAIIQEITGDQNVITTSRFPGTTLDKIEIPLDDG 214 Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319 Y I DT GI + +L +N LK ++ KKEI PK Sbjct: 215 SY---IYDTPGIIHRHQMAH-------YLTAKN------LKYVSPKKEIK-PKT 251 >gi|5199325|gb|AAD40807.1|AF145049_8 ATP/GTP-binding protein [Streptomyces fradiae] Length = 425 Score = 43.1 bits (100), Expect = 0.084, Method: Compositional matrix adjust. Identities = 43/174 (24%), Positives = 76/174 (43%), Gaps = 24/174 (13%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI--RE 279 + + G++NAGKSSL N L DV +V D T D + G + ++DT G R Sbjct: 202 VALAGYTNAGKSSLLNRLTGADV-LVKDALFATLDPTVRRVRAGGRVCTLTDTVGFVSRL 260 Query: 280 TDDIVEKEGIKRTFLEVENADLIL---------LLKEINSKKEISFP---KNIDFIFIGT 327 +V + + T EV ADL+L L++I + + + + I + Sbjct: 261 PHHLV--DAFRSTLEEVTEADLVLHVVDSSHPDPLRQIETVRAVIGDIGGAGVPEILVAN 318 Query: 328 KSDLYST-------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374 K+D E ++S+ TG G++ L++++ LS ++ +P Sbjct: 319 KADAAPEGALERLLAAEPAAEVVSARTGAGVDRLLDRVAERLSGTGLQMELLLP 372 >gi|317177505|dbj|BAJ55294.1| iron(II) transport protein [Helicobacter pylori F16] Length = 644 Score = 43.1 bits (100), Expect = 0.085, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKSSL NAL+ + V + G T D + + L + + I D G + Sbjct: 8 VALVGQPNVGKSSLINALSNAHLK-VGNFAGVTVDKMEVSLIHKERQITIIDLPGTYALN 66 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 D +E + + FLE DLIL Sbjct: 67 DFTTEEKVTKDFLEKGQYDLIL 88 >gi|260495459|ref|ZP_05815585.1| GTP-binding protein Era [Fusobacterium sp. 3_1_33] gi|260196996|gb|EEW94517.1| GTP-binding protein Era [Fusobacterium sp. 3_1_33] Length = 298 Score = 43.1 bits (100), Expect = 0.085, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 44/84 (52%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+L N L + VAIV+D GTTRD + L+ + DT GI + Sbjct: 6 IAVVGRPNVGKSTLINKLVSEKVAIVSDKAGTTRDNIKGILNFKDNQYIFIDTPGIHKPQ 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + +++ D+IL L Sbjct: 66 HLLGEYMTNIAVSILKDVDIILFL 89 >gi|269796933|ref|YP_003316388.1| GTPase [Sanguibacter keddieii DSM 10542] gi|269099118|gb|ACZ23554.1| predicted GTPase [Sanguibacter keddieii DSM 10542] Length = 344 Score = 43.1 bits (100), Expect = 0.085, Method: Compositional matrix adjust. Identities = 31/80 (38%), Positives = 43/80 (53%), Gaps = 9/80 (11%) Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT------IDLDLEGYLVKISDTAG 276 V+LG S AGKS+L NALA +V D+ G R T + + G LV DT G Sbjct: 183 VLLGPSGAGKSTLVNALAGTEVLATGDVRGDGRGKHTTTHRELVPVPGLGCLV---DTPG 239 Query: 277 IRETDDIVEKEGIKRTFLEV 296 IR + ++EG+++ F EV Sbjct: 240 IRGVGLVADEEGLEQAFPEV 259 >gi|237745211|ref|ZP_04575692.1| GTP binding protein [Fusobacterium sp. 7_1] gi|229432440|gb|EEO42652.1| GTP binding protein [Fusobacterium sp. 7_1] Length = 298 Score = 43.1 bits (100), Expect = 0.085, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 44/84 (52%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+L N L + VAIV+D GTTRD + L+ + DT GI + Sbjct: 6 IAVVGRPNVGKSTLINKLVSEKVAIVSDKAGTTRDNIKGILNFKDNQYIFIDTPGIHKPQ 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + +++ D+IL L Sbjct: 66 HLLGEYMTNIAVKILKDVDIILFL 89 >gi|221057083|ref|XP_002259679.1| GTP-binding protein [Plasmodium knowlesi strain H] gi|193809751|emb|CAQ40453.1| GTP-binding protein, putative [Plasmodium knowlesi strain H] Length = 280 Score = 43.1 bits (100), Expect = 0.085, Method: Compositional matrix adjust. Identities = 31/81 (38%), Positives = 43/81 (53%), Gaps = 11/81 (13%) Query: 221 KIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDL-------DLEGY-LVKI 271 +I I G SN GKSSL NAL ++VA + PG TR + +L DL GY K+ Sbjct: 77 QIAIFGRSNVGKSSLINALLNNREVAQASRTPGRTRHLFIFNLLNHLSIVDLPGYGFAKV 136 Query: 272 SDTAGIRETDDIVEKEGIKRT 292 S +R+ I+ +E +KR Sbjct: 137 SK--DMRDNWSILIEEYLKRA 155 >gi|163731746|ref|ZP_02139193.1| GTP-binding protein HflX, putative [Roseobacter litoralis Och 149] gi|161395200|gb|EDQ19522.1| GTP-binding protein HflX, putative [Roseobacter litoralis Och 149] Length = 432 Score = 43.1 bits (100), Expect = 0.085, Method: Compositional matrix adjust. Identities = 50/178 (28%), Positives = 79/178 (44%), Gaps = 29/178 (16%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280 I ++G++NAGKS+LFN L DV + D+ T D L L +G V +SDT G Sbjct: 214 IALVGYTNAGKSTLFNHLTGADV-MAKDMLFATLDPTMRRLRLPDGPEVILSDTVGFISE 272 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF-------------IGT 327 + T EV AD+I +++I+ + + K++ I I Sbjct: 273 LPTELVAAFRATLEEVLAADVICHVRDISHPETDAQAKDVQDIMTTLGVEDDRPAFEIWN 332 Query: 328 KSDLYSTYTEEYDHL------------ISSFTGEGLEELINKIKSILSNKFKKLPFSI 373 K DL S E+ D + IS+ +GEGL+ L+ I L + ++ S+ Sbjct: 333 KLDLLS--EEDADAMRARADRDPAVFAISALSGEGLDGLLEAITQTLQGQKREATLSL 388 >gi|18310997|ref|NP_562931.1| GTP-binding protein Era [Clostridium perfringens str. 13] gi|21263575|sp|Q8XIU8|ERA_CLOPE RecName: Full=GTPase Era gi|18145679|dbj|BAB81721.1| GTP-binding protein [Clostridium perfringens str. 13] Length = 296 Score = 43.1 bits (100), Expect = 0.085, Method: Compositional matrix adjust. Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 1/91 (1%) Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274 + ++G+ I I+G N GKS+L N L + ++IV++ P TTR+ + L + Y + DT Sbjct: 1 MFKSGF-ITIVGRPNVGKSTLTNLLMGEKLSIVSNKPQTTRNNIQTILTGDDYQMIFVDT 59 Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLL 305 GI + + + + +++ DL+L L Sbjct: 60 PGIHKPKHKLGEYMVNSATDSIKDVDLVLFL 90 >gi|88802178|ref|ZP_01117706.1| putative GTP-binding protein [Polaribacter irgensii 23-P] gi|88782836|gb|EAR14013.1| putative GTP-binding protein [Polaribacter irgensii 23-P] Length = 294 Score = 43.1 bits (100), Expect = 0.085, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 48/88 (54%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 I+G+ N GKS+L NAL + ++I+T TTR + ++ E Y + SDT GI + Sbjct: 10 IIGNPNVGKSTLMNALVGEKLSIITAKAQTTRHRILGIVNEEDYQIVFSDTPGIIKPAYE 69 Query: 284 VEKEGIKRTFLEVENADLILLLKEINSK 311 ++ + E+AD+++ + E+ K Sbjct: 70 LQSSMMDFVKSAFEDADILIYMVEVGEK 97 >gi|303241142|ref|ZP_07327650.1| ribosome biogenesis GTP-binding protein YlqF [Acetivibrio cellulolyticus CD2] gi|302591269|gb|EFL61009.1| ribosome biogenesis GTP-binding protein YlqF [Acetivibrio cellulolyticus CD2] Length = 321 Score = 43.1 bits (100), Expect = 0.086, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 3/79 (3%) Query: 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 ++N + I + KL I K +I+G N GKSSL N +A K A+ D PG TR Sbjct: 131 MQNLMKDKIERDKLKGRISRPIKTMIVGIPNVGKSSLINKIAGKASAVTGDRPGVTRGKQ 190 Query: 259 TIDLDLEGYLVKISDTAGI 277 I+++ + +++ DT GI Sbjct: 191 WINVNDQ---IQLLDTPGI 206 >gi|315586638|gb|ADU41019.1| FeoB family ferrous iron (Fe2+) uptake protein [Helicobacter pylori 35A] Length = 644 Score = 43.1 bits (100), Expect = 0.086, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKSSL NAL+ + V + G T D + + L + + I D G + Sbjct: 8 VALVGQPNVGKSSLINALSNAHLK-VGNFAGVTVDKMEVSLIHKERQITIIDLPGTYALN 66 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 D +E + + FLE DLIL Sbjct: 67 DFTTEEKVTKDFLEKGQYDLIL 88 >gi|260777528|ref|ZP_05886422.1| 50S ribosomal subunit maturation GTPase RbgA [Vibrio coralliilyticus ATCC BAA-450] gi|260607194|gb|EEX33468.1| 50S ribosomal subunit maturation GTPase RbgA [Vibrio coralliilyticus ATCC BAA-450] Length = 314 Score = 43.1 bits (100), Expect = 0.086, Method: Compositional matrix adjust. Identities = 33/104 (31%), Positives = 56/104 (53%), Gaps = 13/104 (12%) Query: 178 FSEEEDVQNF----SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233 F +E +V+ S+ + +N IL L ++ H + ++G+ IR +I+G N GKS Sbjct: 78 FEKEHNVKAMAITTSNTQEVNKILELCRKLAPH--REEIGKNIRT----MIMGIPNVGKS 131 Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 ++ N LA + +A+ + P TR I+L G + +SDT GI Sbjct: 132 TIINTLAGRTIAVTGNQPAVTRRQQRINLQ-NGIV--LSDTPGI 172 >gi|197122169|ref|YP_002134120.1| GTP-binding protein HSR1-related [Anaeromyxobacter sp. K] gi|196172018|gb|ACG72991.1| GTP-binding protein HSR1-related [Anaeromyxobacter sp. K] Length = 330 Score = 43.1 bits (100), Expect = 0.086, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 46/75 (61%), Gaps = 6/75 (8%) Query: 209 QGKLGEIIRNGY-KIVILGHSNAGKSSLFNAL--AKKDVAIVTDIPGTTRDVLTIDLDLE 265 + ++G+++R G + V++G +N+GKSSL AL A+ ++A + P TTRD L ++ E Sbjct: 69 RAEVGQVVREGAGQWVMIGPANSGKSSLLAALTHARPEIA---EYPFTTRDPLPGMMEFE 125 Query: 266 GYLVKISDTAGIRET 280 V++ DT + E Sbjct: 126 DVQVQLVDTPAVGEA 140 >gi|170762293|ref|YP_001752575.1| GTP-binding protein Era [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|186701592|ref|ZP_02553723.2| GTP-binding protein Era [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|13959363|sp|Q9PPZ9|ERA_UREPA RecName: Full=GTPase Era gi|189037684|sp|B1AJD1|ERA_UREP2 RecName: Full=GTPase Era gi|168827870|gb|ACA33132.1| GTP-binding protein Era [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|186700821|gb|EDU19103.1| GTP-binding protein Era [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 300 Score = 43.1 bits (100), Expect = 0.086, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 35/58 (60%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 + I+G N GKS+L NA+ KK V+I+++ P TTR+ + + + + +DT G E Sbjct: 8 VAIVGKPNVGKSTLINAIMKKKVSIISNKPQTTRNAVKEIYEDDESAIIFTDTPGFHE 65 >gi|313886114|ref|ZP_07819849.1| ribosome biogenesis GTPase Era [Porphyromonas asaccharolytica PR426713P-I] gi|332300531|ref|YP_004442452.1| GTP-binding protein Era-like-protein [Porphyromonas asaccharolytica DSM 20707] gi|312924460|gb|EFR35234.1| ribosome biogenesis GTPase Era [Porphyromonas asaccharolytica PR426713P-I] gi|332177594|gb|AEE13284.1| GTP-binding protein Era-like-protein [Porphyromonas asaccharolytica DSM 20707] Length = 306 Score = 43.1 bits (100), Expect = 0.086, Method: Compositional matrix adjust. Identities = 31/119 (26%), Positives = 64/119 (53%), Gaps = 5/119 (4%) Query: 205 SHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL 264 H++ L E ++G+ + I+G+ N GKS+L N L + ++I+T TTR + ++ Sbjct: 5 QHLAGKSLPEGYKSGF-VSIVGNPNVGKSTLMNYLVGERISIITSKAQTTRHRILGIVNS 63 Query: 265 EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI 323 + V SDT G+ + +++ + +E+ADL+L + + +++ K+ DF+ Sbjct: 64 DHMQVVYSDTPGVLQPSYKLQERMRAYSEQALEDADLLLYVTDTMEERD----KHHDFV 118 >gi|302385324|ref|YP_003821146.1| GTP-binding protein Era [Clostridium saccharolyticum WM1] gi|302195952|gb|ADL03523.1| GTP-binding protein Era [Clostridium saccharolyticum WM1] Length = 301 Score = 43.1 bits (100), Expect = 0.086, Method: Compositional matrix adjust. Identities = 33/99 (33%), Positives = 55/99 (55%), Gaps = 11/99 (11%) Query: 216 IRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKI 271 + N YK + ++G N GKS+L N L + +AI +D P TTR+ + T+ D G ++ + Sbjct: 1 MENNYKSGFVTLIGRPNVGKSTLMNHLIGQKIAITSDKPQTTRNRIQTVYTDERGQIIFL 60 Query: 272 SDTAGIRETDDIVEKEGI---KRTFLEVENADLILLLKE 307 DT GI + + + + + +RT EV D++L L E Sbjct: 61 -DTPGIHKAKNKLGEYMVSVAERTLKEV---DVVLWLVE 95 >gi|291571472|dbj|BAI93744.1| GTP-binding protein Era homolog [Arthrospira platensis NIES-39] Length = 310 Score = 43.1 bits (100), Expect = 0.086, Method: Compositional matrix adjust. Identities = 43/181 (23%), Positives = 71/181 (39%), Gaps = 29/181 (16%) Query: 219 GYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 GYK + I+G N GKS+L N L + +AI + I TTR+ L L + + DT Sbjct: 15 GYKSGFVGIIGRPNVGKSTLMNKLVGQKIAITSPIAQTTRNRLRGILTTDSAQIIFVDTP 74 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKE------------INSKKEISFPKNIDFI 323 GI + + K +K L + + D+++ + + ++ P + Sbjct: 75 GIHKPHHQLGKVLVKNAKLAIASVDVLVFVVDSSVMSGGGDRYIVDLLTHTKVPVILGLN 134 Query: 324 FIGTKSDLYSTYTEEYDHL----------ISSFTGEGLEELINKIKSILSNKFKKLPFSI 373 + D Y + Y S+ TG G+E L N +L N P+ Sbjct: 135 KWDLQPDQYEAIDQSYQQFAEANQWQMVKFSAVTGAGVETLQN----LLINSLDPGPYYY 190 Query: 374 P 374 P Sbjct: 191 P 191 >gi|225859501|ref|YP_002741011.1| GTP-binding protein YqeH [Streptococcus pneumoniae 70585] gi|225722019|gb|ACO17873.1| GTP-binding protein [Streptococcus pneumoniae 70585] Length = 368 Score = 43.1 bits (100), Expect = 0.086, Method: Compositional matrix adjust. Identities = 48/174 (27%), Positives = 74/174 (42%), Gaps = 45/174 (25%) Query: 151 SGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQG 210 SG++S QW+ K H D+ + ++ + KEV++ I Sbjct: 118 SGKIS----QWLMKRAHEEGLRPVDVVLTSAQN--KHAIKEVIDKI-------------- 157 Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLE 265 E R G + ++G +N GKS+L NA+ + ++V + PGTT D + I LD Sbjct: 158 ---EHYRKGRDVYVVGVTNVGKSTLINAIIQEITGDQNVITTSRFPGTTLDKIEIPLDDG 214 Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319 Y I DT GI + +L +N LK ++ KKEI PK Sbjct: 215 SY---IYDTPGIIHRHQMAH-------YLTAKN------LKYVSPKKEIK-PKT 251 >gi|217033685|ref|ZP_03439112.1| hypothetical protein HP9810_5g27 [Helicobacter pylori 98-10] gi|216943874|gb|EEC23311.1| hypothetical protein HP9810_5g27 [Helicobacter pylori 98-10] Length = 642 Score = 43.1 bits (100), Expect = 0.086, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKSSL NAL+ + V + G T D + + L + + I D G + Sbjct: 6 VALVGQPNVGKSSLINALSNAHLK-VGNFAGVTVDKMEVSLIHKERQITIIDLPGTYALN 64 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 D +E + + FLE DLIL Sbjct: 65 DFTTEEKVTKDFLEKGQYDLIL 86 >gi|84516232|ref|ZP_01003592.1| GTP-binding protein HflX [Loktanella vestfoldensis SKA53] gi|84509928|gb|EAQ06385.1| GTP-binding protein HflX [Loktanella vestfoldensis SKA53] Length = 424 Score = 43.1 bits (100), Expect = 0.086, Method: Compositional matrix adjust. Identities = 46/168 (27%), Positives = 74/168 (44%), Gaps = 27/168 (16%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRET 280 + ++G++NAGKS+LFN L DV + D+ T D + L G V +SDT G Sbjct: 206 VALVGYTNAGKSTLFNMLTGADV-LAKDMLFATLDPTMRKITLPTGDEVIMSDTVGFISD 264 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKK-------------EISFPKNIDFIFIGT 327 + T EV +ADLIL +++I+ + ++ +N I + Sbjct: 265 LPTELVAAFRATLEEVLDADLILHIRDISHDQTEEQACDVMAILHKLGVAENAPLIEVWN 324 Query: 328 KSDL-----------YSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364 K DL + TE+ +S+ TGEG+ L+ I L + Sbjct: 325 KVDLLQGEAFEGRVNQAARTEDL-FAVSALTGEGMAALLAAIPEKLKD 371 >gi|71027773|ref|XP_763530.1| hypothetical protein [Theileria parva strain Muguga] gi|68350483|gb|EAN31247.1| GTP-binding protein, putative [Theileria parva] Length = 521 Score = 43.1 bits (100), Expect = 0.086, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 31/57 (54%), Gaps = 2/57 (3%) Query: 222 IVILGHSNAGKSSLFNALAK--KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 + I+G N GKSS+FN + K ++V D PGTTRD D G +I DT G Sbjct: 65 VSIVGRPNVGKSSIFNRITKLFHYGSVVNDAPGTTRDRQYSIADWNGKYFRIIDTGG 121 >gi|330685473|gb|EGG97127.1| ribosome biogenesis GTPase YqeH [Staphylococcus epidermidis VCU121] Length = 366 Score = 43.1 bits (100), Expect = 0.087, Method: Compositional matrix adjust. Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 15/100 (15%) Query: 217 RNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 R+ + I+G +N GKS+L N L +KDV + PGTT D++ I LD + ++ Sbjct: 158 RDQEDVYIVGTTNVGKSTLINKLIELSVGEKDVVTTSRFPGTTLDMIDIPLDEKSFMF-- 215 Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311 DT GI ++ + F+ + LI+ KEI + Sbjct: 216 -DTPGIIQSHQMTH-------FVTEKELKLIMPKKEIKQR 247 >gi|225857361|ref|YP_002738872.1| GTP-binding protein YqeH [Streptococcus pneumoniae P1031] gi|225725831|gb|ACO21683.1| GTP-binding protein [Streptococcus pneumoniae P1031] Length = 368 Score = 43.1 bits (100), Expect = 0.087, Method: Compositional matrix adjust. Identities = 48/174 (27%), Positives = 74/174 (42%), Gaps = 45/174 (25%) Query: 151 SGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQG 210 SG++S QW+ K H D+ + ++ + KEV++ I Sbjct: 118 SGKIS----QWLMKRAHEEGLRPVDVVLTSAQN--KHAIKEVIDKI-------------- 157 Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLE 265 E R G + ++G +N GKS+L NA+ + ++V + PGTT D + I LD Sbjct: 158 ---EHYRKGRDVYVVGVTNVGKSTLINAIIQEITGDQNVITTSRFPGTTLDKIEIPLDDG 214 Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319 Y I DT GI + +L +N LK ++ KKEI PK Sbjct: 215 SY---IYDTPGIIHRHQMAH-------YLTAKN------LKYVSPKKEIK-PKT 251 >gi|325290526|ref|YP_004266707.1| GTP-binding protein Era-like-protein [Syntrophobotulus glycolicus DSM 8271] gi|324965927|gb|ADY56706.1| GTP-binding protein Era-like-protein [Syntrophobotulus glycolicus DSM 8271] Length = 305 Score = 43.1 bits (100), Expect = 0.088, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 1/61 (1%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R+G+ + ++G NAGKS+L N L + V I+++ P TTR+ + L E + DT G Sbjct: 12 RSGF-VAVVGRPNAGKSTLLNTLVGQKVLIISEKPQTTRNRIQCILTEERGQIVFIDTPG 70 Query: 277 I 277 I Sbjct: 71 I 71 >gi|220916946|ref|YP_002492250.1| TGS domain protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219954800|gb|ACL65184.1| TGS domain protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 330 Score = 43.1 bits (100), Expect = 0.088, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 45/72 (62%), Gaps = 6/72 (8%) Query: 209 QGKLGEIIRNGY-KIVILGHSNAGKSSLFNAL--AKKDVAIVTDIPGTTRDVLTIDLDLE 265 + ++G+++R G + V++G +N+GKSSL AL AK ++A + P TTRD L ++ E Sbjct: 69 RAEVGQVVREGAGQWVMIGPANSGKSSLLAALTHAKPEIA---EYPFTTRDPLPGMMEFE 125 Query: 266 GYLVKISDTAGI 277 V++ DT + Sbjct: 126 DVQVQLVDTPAV 137 >gi|148984192|ref|ZP_01817487.1| GTP-binding protein [Streptococcus pneumoniae SP3-BS71] gi|149006583|ref|ZP_01830282.1| GTP-binding protein [Streptococcus pneumoniae SP18-BS74] gi|169833423|ref|YP_001695124.1| GTP-binding protein YqeH [Streptococcus pneumoniae Hungary19A-6] gi|182684693|ref|YP_001836440.1| GTP-binding protein [Streptococcus pneumoniae CGSP14] gi|237649161|ref|ZP_04523413.1| GTP-binding protein YqeH [Streptococcus pneumoniae CCRI 1974] gi|237820723|ref|ZP_04596568.1| GTP-binding protein YqeH [Streptococcus pneumoniae CCRI 1974M2] gi|147761881|gb|EDK68844.1| GTP-binding protein [Streptococcus pneumoniae SP18-BS74] gi|147923481|gb|EDK74594.1| GTP-binding protein [Streptococcus pneumoniae SP3-BS71] gi|168995925|gb|ACA36537.1| GTP-binding protein [Streptococcus pneumoniae Hungary19A-6] gi|182630027|gb|ACB90975.1| GTP-binding protein [Streptococcus pneumoniae CGSP14] gi|301800552|emb|CBW33192.1| GTP-binding protein [Streptococcus pneumoniae OXC141] gi|332072922|gb|EGI83403.1| GTPase family protein [Streptococcus pneumoniae GA17545] Length = 368 Score = 43.1 bits (100), Expect = 0.088, Method: Compositional matrix adjust. Identities = 48/174 (27%), Positives = 74/174 (42%), Gaps = 45/174 (25%) Query: 151 SGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQG 210 SG++S QW+ K H D+ + ++ + KEV++ I Sbjct: 118 SGKIS----QWLMKRAHEEGLRPVDVVLTSAQN--KHAIKEVIDKI-------------- 157 Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLE 265 E R G + ++G +N GKS+L NA+ + ++V + PGTT D + I LD Sbjct: 158 ---EHYRKGRDVYVVGVTNVGKSTLINAIIQEITGDQNVITTSRFPGTTLDKIEIPLDDG 214 Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319 Y I DT GI + +L +N LK ++ KKEI PK Sbjct: 215 SY---IYDTPGIIHRHQMAH-------YLTAKN------LKYVSPKKEIK-PKT 251 >gi|116733913|gb|ABK20015.1| hypothetical protein [synthetic construct] Length = 335 Score = 43.1 bits (100), Expect = 0.088, Method: Compositional matrix adjust. Identities = 37/99 (37%), Positives = 53/99 (53%), Gaps = 5/99 (5%) Query: 217 RNGY-KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDT 274 +NG +I ++G++NAGKS+ FN L D + D+ T D +T + L GY V +SDT Sbjct: 168 KNGVLQIALVGYTNAGKSTWFNRLTSAD-SYEEDLLFATLDPMTRKMVLPSGYSVLLSDT 226 Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313 G + + T EV+ ADLIL L I+S E Sbjct: 227 VGFIQDLPTTLIAAFRSTLEEVKEADLILHL--IDSSNE 263 >gi|160876996|ref|YP_001556312.1| GTP-binding proten HflX [Shewanella baltica OS195] gi|217974859|ref|YP_002359610.1| GTP-binding proten HflX [Shewanella baltica OS223] gi|304410916|ref|ZP_07392533.1| GTP-binding proten HflX [Shewanella baltica OS183] gi|307304913|ref|ZP_07584663.1| GTP-binding proten HflX [Shewanella baltica BA175] gi|160862518|gb|ABX51052.1| GTP-binding proten HflX [Shewanella baltica OS195] gi|217499994|gb|ACK48187.1| GTP-binding proten HflX [Shewanella baltica OS223] gi|304350813|gb|EFM15214.1| GTP-binding proten HflX [Shewanella baltica OS183] gi|306912315|gb|EFN42739.1| GTP-binding proten HflX [Shewanella baltica BA175] gi|315269199|gb|ADT96052.1| GTP-binding proten HflX [Shewanella baltica OS678] Length = 435 Score = 43.1 bits (100), Expect = 0.088, Method: Compositional matrix adjust. Identities = 63/227 (27%), Positives = 98/227 (43%), Gaps = 34/227 (14%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRE- 279 + ++G++NAGKS+LFNAL DV + T L LDL V ++DT G IR Sbjct: 200 VSLVGYTNAGKSTLFNALTSSDVYAADQLFATLDPTLR-KLDLPDGAVILADTVGFIRHL 258 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEI-------NSKKEISFPKNIDF-----IFIGT 327 D+V K T E A+L+L + + N + S K+I+ + + Sbjct: 259 PHDLV--AAFKATLQETRQAELLLHIVDCADENMADNFDQVQSVLKDIEADEVMQLVVCN 316 Query: 328 KSDLYSTYTE--EYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378 K DL T EY+ + +S+ G + L+ I ++ K+L IP+ Sbjct: 317 KIDLLEDVTPRIEYNDIGKPVRVWVSAQKRLGFDLLLKAITELIGEVIKELTLRIPATAG 376 Query: 379 HLYHLSQTVRYLEMASLNEKDCGLDIIAENL------RLASVSLGKI 419 H +L Q R + D G I++ L RLA S G++ Sbjct: 377 H--YLGQFYRLDAIQQKEYDDLGNCILSVRLSDADWRRLAKQSQGEL 421 >gi|332670393|ref|YP_004453401.1| ribosome-associated GTPase EngA [Cellulomonas fimi ATCC 484] gi|332339431|gb|AEE46014.1| ribosome-associated GTPase EngA [Cellulomonas fimi ATCC 484] Length = 491 Score = 43.1 bits (100), Expect = 0.089, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 31/55 (56%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 + ++G N GKS+L N + + A+V D+PG TRD ++ + G + DT G Sbjct: 59 LAVVGRPNVGKSTLVNRILGRREAVVEDMPGVTRDRVSYPAEWAGRRFTLVDTGG 113 Score = 40.4 bits (93), Expect = 0.56, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 33/58 (56%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 ++ ++G N GKSSL N + + +V + GTTRD + + L+G DTAGIR Sbjct: 232 RVALVGRPNVGKSSLLNKVLGAERVVVDAVAGTTRDPVDELVLLKGEPWVFVDTAGIR 289 >gi|167749633|ref|ZP_02421760.1| hypothetical protein EUBSIR_00591 [Eubacterium siraeum DSM 15702] gi|167657386|gb|EDS01516.1| hypothetical protein EUBSIR_00591 [Eubacterium siraeum DSM 15702] gi|291530788|emb|CBK96373.1| GTP-binding protein Era [Eubacterium siraeum 70/3] gi|291557707|emb|CBL34824.1| GTP-binding protein Era [Eubacterium siraeum V10Sc8a] Length = 302 Score = 43.1 bits (100), Expect = 0.089, Method: Compositional matrix adjust. Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 12/96 (12%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK------ISDTA 275 + I G NAGKS+L N L + +AIV+D P TTR + G L K DT Sbjct: 9 VAIAGRPNAGKSTLTNYLVGEKIAIVSDKPQTTR------TRINGVLTKGETQYVFIDTP 62 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311 G+ + + + + +K V + D+IL++ + K Sbjct: 63 GMHKAKNKLSDQMLKSIRESVTDVDVILMMADATKK 98 >gi|219849958|ref|YP_002464391.1| GTP-binding proten HflX [Chloroflexus aggregans DSM 9485] gi|219544217|gb|ACL25955.1| GTP-binding proten HflX [Chloroflexus aggregans DSM 9485] Length = 461 Score = 43.1 bits (100), Expect = 0.089, Method: Compositional matrix adjust. Identities = 47/192 (24%), Positives = 81/192 (42%), Gaps = 35/192 (18%) Query: 222 IVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKI-SDTAG 276 I ++G++NAGKS+L NA+ DV + + TTR VL L G V + +DT G Sbjct: 238 IALVGYTNAGKSTLLNAMTGADVLAEDKLFATLDPTTRQVL-----LPGNTVALMTDTVG 292 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNID------------FIF 324 + + T E+E ADL+L + ++ + + ++ + Sbjct: 293 FIQKLPPQLIAAFRATLEEIEEADLLLHVVDVTHRNAQEHAQTVEQTLRELKVDHKPILT 352 Query: 325 IGTKSDLYSTYTEE-YDHL------------ISSFTGEGLEELINKIKSILSNKFKKLPF 371 + K DL T E D + +S+ G GL+ L +I + L+ + ++ Sbjct: 353 VLNKIDLLEGATAEGIDQIAAEMGLPGDIVAVSARRGWGLQTLGERIVATLAQRMVRVDA 412 Query: 372 SIPSHKRHLYHL 383 IP + L L Sbjct: 413 LIPYQRNDLVAL 424 >gi|290474871|ref|YP_003467751.1| putative CP4-6 prophage; GTP-binding factor [Xenorhabdus bovienii SS-2004] gi|289174184|emb|CBJ80973.1| putative CP4-6 prophage; GTP-binding factor [Xenorhabdus bovienii SS-2004] Length = 291 Score = 43.1 bits (100), Expect = 0.089, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 3/85 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G + AGKSSL NAL + +V ++D+ TRDVL L + + + D G+ E++ Sbjct: 39 IGIMGKTGAGKSSLCNALFQGEVTPISDVHACTRDVLRFRLRKGEHSLILIDLPGVGESE 98 Query: 282 DI-VEKEGIKRTFLEVENADLILLL 305 E E + R L DLIL + Sbjct: 99 QRDKEYESLYRNIL--PELDLILWV 121 >gi|225861571|ref|YP_002743080.1| GTP-binding protein YqeH [Streptococcus pneumoniae Taiwan19F-14] gi|298230643|ref|ZP_06964324.1| GTP-binding protein YqeH [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254887|ref|ZP_06978473.1| GTP-binding protein YqeH [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503494|ref|YP_003725434.1| GTP-binding protein [Streptococcus pneumoniae TCH8431/19A] gi|225726735|gb|ACO22586.1| GTP-binding protein [Streptococcus pneumoniae Taiwan19F-14] gi|298239089|gb|ADI70220.1| GTP-binding protein [Streptococcus pneumoniae TCH8431/19A] gi|327389933|gb|EGE88278.1| GTPase family protein [Streptococcus pneumoniae GA04375] gi|332200311|gb|EGJ14384.1| GTPase family protein [Streptococcus pneumoniae GA47368] Length = 368 Score = 43.1 bits (100), Expect = 0.089, Method: Compositional matrix adjust. Identities = 48/174 (27%), Positives = 74/174 (42%), Gaps = 45/174 (25%) Query: 151 SGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQG 210 SG++S QW+ K H D+ + ++ + KEV++ I Sbjct: 118 SGKIS----QWLMKRAHEEGLRPVDVVLTSAQN--KHAIKEVIDKI-------------- 157 Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLE 265 E R G + ++G +N GKS+L NA+ + ++V + PGTT D + I LD Sbjct: 158 ---EHYRKGRDVYVVGVTNVGKSTLINAIIQEITGDQNVITTSRFPGTTLDKIEIPLDDG 214 Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319 Y I DT GI + +L +N LK ++ KKEI PK Sbjct: 215 SY---IYDTPGIIHRHQMAH-------YLTAKN------LKYVSPKKEIK-PKT 251 >gi|183601212|ref|ZP_02962705.1| hypothetical protein PROSTU_04846 [Providencia stuartii ATCC 25827] gi|188019561|gb|EDU57601.1| hypothetical protein PROSTU_04846 [Providencia stuartii ATCC 25827] Length = 290 Score = 43.1 bits (100), Expect = 0.089, Method: Compositional matrix adjust. Identities = 20/71 (28%), Positives = 37/71 (52%) Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269 +L ++I I ++G + AGKSSL NAL + ++ V+D+ G TR + + + + Sbjct: 24 NQLSQLINYSPTIGLMGKTGAGKSSLINALFQSSLSPVSDVSGCTRQAQRFSMTMNNHTL 83 Query: 270 KISDTAGIRET 280 D + E+ Sbjct: 84 TFVDLPSVGES 94 >gi|94971366|ref|YP_593414.1| GTP-binding protein, HSR1-related [Candidatus Koribacter versatilis Ellin345] gi|94553416|gb|ABF43340.1| GTP-binding protein, HSR1-related protein [Candidatus Koribacter versatilis Ellin345] Length = 451 Score = 43.1 bits (100), Expect = 0.089, Method: Compositional matrix adjust. Identities = 44/181 (24%), Positives = 77/181 (42%), Gaps = 37/181 (20%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL------VKISDTA 275 + ++G++NAGKS+LFNAL K V +++ T+D L G + V +SDT Sbjct: 235 VALVGYTNAGKSTLFNALTKAGVY------ASSKMFATLDPTLRGVMLPSKRQVLLSDTV 288 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLK---------------------EINSKKEI 314 G + T EV+ A L+L + E+ K +I Sbjct: 289 GFIRNLPTTLVSAFRATLEEVQRAALLLHVADATSPVALEQQRQVEDVLGELEVQDKPQI 348 Query: 315 SFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKI-KSILSNKFKKLPFSI 373 ID + ++ L ++ + +S+ +G G+E L++ I ++I + K I Sbjct: 349 HVMNKIDLLATSKRAALINSGKVVH---VSAKSGLGMEALLHAIDEAITEDPVKTARLKI 405 Query: 374 P 374 P Sbjct: 406 P 406 >gi|87199949|ref|YP_497206.1| small GTP-binding protein domain-containing protein [Novosphingobium aromaticivorans DSM 12444] gi|87135630|gb|ABD26372.1| Small GTP-binding protein domain [Novosphingobium aromaticivorans DSM 12444] Length = 426 Score = 43.1 bits (100), Expect = 0.089, Method: Compositional matrix adjust. Identities = 46/184 (25%), Positives = 76/184 (41%), Gaps = 32/184 (17%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI-SDTAGIRET 280 I ++G++NAGKS+LFN L DV + D+ T D + L G I SDT G Sbjct: 196 IALVGYTNAGKSTLFNRLTGADV-MAEDLLFATLDPTMRAIRLPGVEKAILSDTVGFISD 254 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI------NSKKEIS-----------FPKNIDFI 323 + T EV AD+I+ ++++ + K E+ I + Sbjct: 255 LPTQLVAAFRATLEEVTAADVIVHVRDVANLASADQKAEVEQILADLGVIGEAGSTIPIV 314 Query: 324 FIGTKSDLYSTYTEEYDH-------------LISSFTGEGLEELINKIKSILSNKFKKLP 370 K DL + + IS+ TG G+E L++K+ +L+ + L Sbjct: 315 EAWNKWDLLTPEEQAMRQDLIAAKIAEVPVVPISALTGAGVETLLDKLGEMLTGSAQTLE 374 Query: 371 FSIP 374 ++P Sbjct: 375 LTVP 378 >gi|293571008|ref|ZP_06682051.1| nitric-oxide synthase [Enterococcus faecium E980] gi|291608934|gb|EFF38213.1| nitric-oxide synthase [Enterococcus faecium E980] Length = 369 Score = 43.1 bits (100), Expect = 0.090, Method: Compositional matrix adjust. Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 15/100 (15%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 R+G + I+G +N GKS+L N + K +DV + PGTT D + I LD +L+ Sbjct: 162 RDGRDVYIVGVTNVGKSTLINQIIKNTAGVQDVITTSQFPGTTLDKIEIPLDDGHFLI-- 219 Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311 DT GI + +L ++ +I LKEI K Sbjct: 220 -DTPGIIHRHQMAH-------YLGKKDLRIIAPLKEIKPK 251 >gi|289668455|ref|ZP_06489530.1| ribosome biogenesis GTP-binding protein YsxC [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 188 Score = 43.1 bits (100), Expect = 0.090, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 1/55 (1%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKD-VAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 G+++ G SNAGKSS NAL +++ +A V+ PG T+ ++ + E YLV + Sbjct: 5 GGFEVAFAGRSNAGKSSALNALTRQNSLARVSKTPGRTQQLVFFQIQPERYLVDL 59 >gi|229056697|ref|ZP_04196101.1| hypothetical protein bcere0026_8170 [Bacillus cereus AH603] gi|228720633|gb|EEL72194.1| hypothetical protein bcere0026_8170 [Bacillus cereus AH603] Length = 548 Score = 43.1 bits (100), Expect = 0.090, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 73/157 (46%), Gaps = 22/157 (14%) Query: 219 GYKIVIL--GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 G K VI+ G AGKSSLFNAL +D I TT + ++L Y+ + DT G Sbjct: 31 GVKPVIINTGLLKAGKSSLFNALCDRDEFNSGVIRTTT---VNKKVELPDYV--LVDTPG 85 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEIN----SKKEISFPKNIDFIFIGTKSDLY 332 + + E F +NAD+I+ + I S+ E I IF GT L Sbjct: 86 LNANE-----EDTNEAFEGYKNADVIIFVHNIEDGELSRVECDAIHEISSIFQGTDGFLN 140 Query: 333 STYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369 S+ L+ S + E INKIKS++ N+ +K+ Sbjct: 141 SSI------LVLSHADQVEEATINKIKSVIQNQCEKI 171 >gi|193222286|emb|CAL61445.2| GTP-binding protein HflX [Herminiimonas arsenicoxydans] Length = 372 Score = 43.1 bits (100), Expect = 0.090, Method: Compositional matrix adjust. Identities = 54/181 (29%), Positives = 83/181 (45%), Gaps = 29/181 (16%) Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259 K I+ ++G+ N + + ++G++NAGKS+LFNALAK + + D T D + Sbjct: 175 KQHITQRRARGR-----NNAFSVSLVGYTNAGKSTLFNALAKTKM-LAADQLFATLDTTS 228 Query: 260 IDLDL-EGYLVKISDTAG-IRETDDIVEKEGIKRTFLEVENADLIL------------LL 305 + L E V ISDT G IRE + + T E +ADL+L + Sbjct: 229 RRIYLGEAGNVVISDTVGFIRELPHQL-VAAFRATLEETIHADLLLHVVDGASPARMEQI 287 Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLY----STYTEEYDHL----ISSFTGEGLEELINK 357 +E+N+ I I + K D + +EYD + IS+ TG GL+ L Sbjct: 288 EEVNAVLREIGADQIPQILVWNKIDAAGLEPALERDEYDKIRRVFISAQTGSGLDLLREA 347 Query: 358 I 358 I Sbjct: 348 I 348 >gi|15901581|ref|NP_346185.1| GTP-binding protein YqeH [Streptococcus pneumoniae TIGR4] gi|111657472|ref|ZP_01408219.1| hypothetical protein SpneT_02001323 [Streptococcus pneumoniae TIGR4] gi|149011381|ref|ZP_01832628.1| GTP-binding protein [Streptococcus pneumoniae SP19-BS75] gi|149020832|ref|ZP_01835361.1| GTP-binding protein [Streptococcus pneumoniae SP23-BS72] gi|168483288|ref|ZP_02708240.1| GTP-binding protein [Streptococcus pneumoniae CDC1873-00] gi|168488531|ref|ZP_02712730.1| GTP-binding protein [Streptococcus pneumoniae SP195] gi|168491368|ref|ZP_02715511.1| GTP-binding protein [Streptococcus pneumoniae CDC0288-04] gi|194396922|ref|YP_002038359.1| GTP-binding protein YqeH [Streptococcus pneumoniae G54] gi|303254361|ref|ZP_07340469.1| GTP-binding protein YqeH [Streptococcus pneumoniae BS455] gi|303258686|ref|ZP_07344666.1| GTP-binding protein [Streptococcus pneumoniae SP-BS293] gi|303261849|ref|ZP_07347795.1| GTP-binding protein [Streptococcus pneumoniae SP14-BS292] gi|303263712|ref|ZP_07349634.1| GTP-binding protein [Streptococcus pneumoniae BS397] gi|303266652|ref|ZP_07352536.1| GTP-binding protein [Streptococcus pneumoniae BS457] gi|303268542|ref|ZP_07354335.1| GTP-binding protein [Streptococcus pneumoniae BS458] gi|307127963|ref|YP_003879994.1| GTP-binding protein [Streptococcus pneumoniae 670-6B] gi|14973245|gb|AAK75825.1| GTP-binding protein [Streptococcus pneumoniae TIGR4] gi|147764371|gb|EDK71302.1| GTP-binding protein [Streptococcus pneumoniae SP19-BS75] gi|147930473|gb|EDK81456.1| GTP-binding protein [Streptococcus pneumoniae SP23-BS72] gi|172043326|gb|EDT51372.1| GTP-binding protein [Streptococcus pneumoniae CDC1873-00] gi|183572678|gb|EDT93206.1| GTP-binding protein [Streptococcus pneumoniae SP195] gi|183574264|gb|EDT94792.1| GTP-binding protein [Streptococcus pneumoniae CDC0288-04] gi|194356589|gb|ACF55037.1| GTP-binding protein [Streptococcus pneumoniae G54] gi|301802449|emb|CBW35205.1| GTP-binding protein [Streptococcus pneumoniae INV200] gi|302598712|gb|EFL65750.1| GTP-binding protein YqeH [Streptococcus pneumoniae BS455] gi|302636932|gb|EFL67421.1| GTP-binding protein [Streptococcus pneumoniae SP14-BS292] gi|302640187|gb|EFL70642.1| GTP-binding protein [Streptococcus pneumoniae SP-BS293] gi|302641937|gb|EFL72291.1| GTP-binding protein [Streptococcus pneumoniae BS458] gi|302643814|gb|EFL74077.1| GTP-binding protein [Streptococcus pneumoniae BS457] gi|302646750|gb|EFL76975.1| GTP-binding protein [Streptococcus pneumoniae BS397] gi|306485025|gb|ADM91894.1| GTP-binding protein [Streptococcus pneumoniae 670-6B] gi|332072581|gb|EGI83064.1| GTPase family protein [Streptococcus pneumoniae GA17570] gi|332074089|gb|EGI84567.1| GTPase family protein [Streptococcus pneumoniae GA41301] Length = 368 Score = 43.1 bits (100), Expect = 0.090, Method: Compositional matrix adjust. Identities = 48/174 (27%), Positives = 74/174 (42%), Gaps = 45/174 (25%) Query: 151 SGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQG 210 SG++S QW+ K H D+ + ++ + KEV++ I Sbjct: 118 SGKIS----QWLMKRAHEEGLRPVDVVLTSAQN--KHAIKEVIDKI-------------- 157 Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLE 265 E R G + ++G +N GKS+L NA+ + ++V + PGTT D + I LD Sbjct: 158 ---EHYRKGRDVYVVGVTNVGKSTLINAIIQEITGDQNVITTSRFPGTTLDKIEIPLDDG 214 Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319 Y I DT GI + +L +N LK ++ KKEI PK Sbjct: 215 SY---IYDTPGIIHRHQMAH-------YLTAKN------LKYVSPKKEIK-PKT 251 >gi|89100987|ref|ZP_01173831.1| GTP-binding protein protease modulator [Bacillus sp. NRRL B-14911] gi|89084283|gb|EAR63440.1| GTP-binding protein protease modulator [Bacillus sp. NRRL B-14911] Length = 237 Score = 43.1 bits (100), Expect = 0.090, Method: Compositional matrix adjust. Identities = 54/186 (29%), Positives = 84/186 (45%), Gaps = 24/186 (12%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGI 277 ++I ++G++NAGKS+LFN LA+ + + + T D +T L L GYL +DT G Sbjct: 17 AFQIALVGYTNAGKSTLFNRLAEAE-SFEENQLFATLDPMTRKLILPSGYLALATDTVGF 75 Query: 278 RETDDIVEKEGIKRTFLEVENADLILLL------------KEINSKKEISFPKNIDFIFI 325 + + T EV ADL+L + K +N E ++I + + Sbjct: 76 IQDLPTTLVAAFRSTLEEVSEADLLLHVIDSSNPDYFQHEKTVNKLLEDLDIQHIPQLAV 135 Query: 326 GTKSD------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379 KSD + S TE +IS+F + L KI+ ++ K IPS + Sbjct: 136 YNKSDQVHPDFVPSAKTESV--VISAFADQDRSMLKRKIEELVLGMMKPYQVEIPSTEGR 193 Query: 380 LYHLSQ 385 L LSQ Sbjct: 194 L--LSQ 197 >gi|313889406|ref|ZP_07823054.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus pseudoporcinus SPIN 20026] gi|313122238|gb|EFR45329.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus pseudoporcinus SPIN 20026] Length = 287 Score = 43.1 bits (100), Expect = 0.091, Method: Compositional matrix adjust. Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 7/77 (9%) Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DVLTI 260 +S I++ + I + + +I+G NAGKS+L N LA K VA+V + PG T+ L Sbjct: 105 MSDKITKLRQRGIQKETLRTMIIGIPNAGKSTLMNRLAGKKVAVVGNKPGVTKGQQWLKS 164 Query: 261 DLDLEGYLVKISDTAGI 277 + DLE I DT GI Sbjct: 165 NKDLE-----ILDTPGI 176 >gi|301794722|emb|CBW37173.1| GTP-binding protein [Streptococcus pneumoniae INV104] Length = 368 Score = 43.1 bits (100), Expect = 0.091, Method: Compositional matrix adjust. Identities = 48/174 (27%), Positives = 74/174 (42%), Gaps = 45/174 (25%) Query: 151 SGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQG 210 SG++S QW+ K H D+ + ++ + KEV++ I Sbjct: 118 SGKIS----QWLMKRAHEEGLRPVDVVLTSAQN--KHAIKEVIDKI-------------- 157 Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLE 265 E R G + ++G +N GKS+L NA+ + ++V + PGTT D + I LD Sbjct: 158 ---EHYRKGRDVYVVGVTNVGKSTLINAIIQEITGDQNVITTSRFPGTTLDKIEIPLDDG 214 Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319 Y I DT GI + +L +N LK ++ KKEI PK Sbjct: 215 SY---IYDTPGIIHRHQMAH-------YLTAKN------LKYVSPKKEIK-PKT 251 >gi|289662601|ref|ZP_06484182.1| ribosome biogenesis GTP-binding protein YsxC [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 188 Score = 43.1 bits (100), Expect = 0.091, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 1/55 (1%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKD-VAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 G+++ G SNAGKSS NAL +++ +A V+ PG T+ ++ + E YLV + Sbjct: 5 GGFEVAFAGRSNAGKSSALNALTRQNALARVSKTPGRTQQLVFFQIQPERYLVDL 59 >gi|237785685|ref|YP_002906390.1| putative GTP-binding protein [Corynebacterium kroppenstedtii DSM 44385] gi|237758597|gb|ACR17847.1| putative GTP-binding protein [Corynebacterium kroppenstedtii DSM 44385] Length = 507 Score = 43.1 bits (100), Expect = 0.091, Method: Compositional matrix adjust. Identities = 47/178 (26%), Positives = 80/178 (44%), Gaps = 25/178 (14%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRE 279 +I I G++NAGKSSL NA+ V +V D T D T +L +G V SDT G Sbjct: 281 QIAIAGYTNAGKSSLINAITGAGV-LVEDALFATLDPTTRRAELADGRAVIFSDTVGFVR 339 Query: 280 TDDIVEKEGIKRTFLEVENADLIL-------------------LLKEINSKKEISFPKNI 320 E + + EV +ADL+L +L ++ + + + P I Sbjct: 340 HLPTQLVEAFRSSLEEVASADLVLHVVDGSDPFPLKQIAAVHEVLADVRNSRAETMPPEI 399 Query: 321 DFIFIGTKSD--LYSTYTEEYDHL--ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374 + ++D + + E D + +S+ TGE ++EL ++I+ L+ + +P Sbjct: 400 IVVNKIDQADPIVLAQLRHELDDVVFVSAKTGENIDELASRIELFLNTLDTHVRLHVP 457 >gi|223043263|ref|ZP_03613310.1| GTP-binding protein HflX [Staphylococcus capitis SK14] gi|222443474|gb|EEE49572.1| GTP-binding protein HflX [Staphylococcus capitis SK14] Length = 411 Score = 43.1 bits (100), Expect = 0.091, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 10/89 (11%) Query: 220 YKIVILGHSNAGKSSLFNALA-----KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274 +++ ++G++NAGKSS FN LA +KD+ T P T + + I+ EG+ + ISDT Sbjct: 205 FQVALVGYTNAGKSSWFNVLANEETYEKDLLFATLDPKTRK--IQIN---EGFNLIISDT 259 Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLIL 303 G + K T E ++ADL+L Sbjct: 260 VGFIQKLPTTLVAAFKSTLEEAKDADLLL 288 >gi|192291351|ref|YP_001991956.1| GTP-binding protein Era [Rhodopseudomonas palustris TIE-1] gi|192285100|gb|ACF01481.1| GTP-binding protein Era [Rhodopseudomonas palustris TIE-1] Length = 307 Score = 43.1 bits (100), Expect = 0.091, Method: Compositional matrix adjust. Identities = 46/191 (24%), Positives = 82/191 (42%), Gaps = 32/191 (16%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R G+ + ++G N GKS+L NAL V IV+ TTR ++ + G + + DT G Sbjct: 13 RCGF-VALIGAPNVGKSTLVNALVGSKVTIVSRKVQTTRALIRGIVIESGSQIILVDTPG 71 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKE----INSKKE--------ISFPK-----N 319 I +++ +K + +AD++ +L + IN + E + PK Sbjct: 72 IFAPKRRLDRAMVKTAWSGAHDADIVCVLLDARAGINEQAEDILANLANVDRPKLLVLNK 131 Query: 320 IDFI----FIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375 ID I + + ++S+ TG+G+++L + L+ + PF P Sbjct: 132 IDLIAREKLLALAQAANQRLAFDQTFMVSALTGDGVDDL----RKALAAQVPPGPFHYPE 187 Query: 376 HK------RHL 380 + RHL Sbjct: 188 DQMSDAPLRHL 198 >gi|150390776|ref|YP_001320825.1| GTP-binding protein Era [Alkaliphilus metalliredigens QYMF] gi|189037249|sp|A6TSJ8|ERA_ALKMQ RecName: Full=GTPase Era gi|149950638|gb|ABR49166.1| GTP-binding protein Era [Alkaliphilus metalliredigens QYMF] Length = 295 Score = 43.1 bits (100), Expect = 0.091, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 1/89 (1%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 ++G+ + I+G N GKS+L N + + +AI++D P TTR+ + E + + DT G Sbjct: 4 KSGF-VTIIGRPNVGKSTLMNQIIGEKIAIMSDKPQTTRNKIQSVYSQEDFQIVFLDTPG 62 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL 305 I + + + +K ++ D++L L Sbjct: 63 IHKPKHKLGEYMVKVARDTLKEVDVVLFL 91 >gi|317181999|dbj|BAJ59783.1| iron(II) transport protein [Helicobacter pylori F57] Length = 644 Score = 43.1 bits (100), Expect = 0.092, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKSSL NAL+ + V + G T D + + L + + I D G + Sbjct: 8 VALVGQPNVGKSSLINALSNAHLK-VGNFAGVTVDKMEVSLIHKERQITIIDLPGTYALN 66 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 D +E + + FLE DLIL Sbjct: 67 DFTTEEKVTKDFLEKGQYDLIL 88 >gi|316934143|ref|YP_004109125.1| GTP-binding protein Era [Rhodopseudomonas palustris DX-1] gi|315601857|gb|ADU44392.1| GTP-binding protein Era [Rhodopseudomonas palustris DX-1] Length = 308 Score = 43.1 bits (100), Expect = 0.092, Method: Compositional matrix adjust. Identities = 48/191 (25%), Positives = 85/191 (44%), Gaps = 32/191 (16%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R G+ + ++G N GKS+L NAL V IV+ TTR ++ + + + + DT G Sbjct: 14 RCGF-VALIGAPNVGKSTLVNALVGSKVTIVSRKVQTTRALIRGIVIEDASQIILVDTPG 72 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKE----INSKKE--------ISFPK-----N 319 I +++ +K + +ADL+ +L + IN + E + PK Sbjct: 73 IFAPKRRLDRAMVKTAWSGAHDADLVCVLLDARAGINEQAEDILANLANVDRPKLLVLNK 132 Query: 320 IDFIFIGTKSDLYSTYTEE--YDH--LISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375 ID I L + +D ++S+ TG+G+++L + L+ + + PF P Sbjct: 133 IDLIAREKLLALAQAANQRLAFDQTFMVSALTGDGVDDL----RKALAAQVPEGPFHYPE 188 Query: 376 HK------RHL 380 + RHL Sbjct: 189 DQMSDAPLRHL 199 >gi|293556693|ref|ZP_06675257.1| ribosome biogenesis GTPase YqeH [Enterococcus faecium E1039] gi|291601155|gb|EFF31443.1| ribosome biogenesis GTPase YqeH [Enterococcus faecium E1039] Length = 369 Score = 43.1 bits (100), Expect = 0.092, Method: Compositional matrix adjust. Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 15/100 (15%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 R+G + I+G +N GKS+L N + K +DV + PGTT D + I LD +L+ Sbjct: 162 RDGRDVYIVGVTNVGKSTLINQIIKNTAGVQDVITTSQFPGTTLDKIEIPLDDGHFLI-- 219 Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311 DT GI + +L ++ +I LKEI K Sbjct: 220 -DTPGIIHRHQMAH-------YLGKKDLRIIAPLKEIKPK 251 >gi|237756325|ref|ZP_04584877.1| GTP-binding protein Era [Sulfurihydrogenibium yellowstonense SS-5] gi|237691511|gb|EEP60567.1| GTP-binding protein Era [Sulfurihydrogenibium yellowstonense SS-5] Length = 307 Score = 43.1 bits (100), Expect = 0.092, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 49/89 (55%), Gaps = 1/89 (1%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R G+ + I+G N GKS+L N + ++IV+ P TTR + L + DT G Sbjct: 11 RAGF-VAIVGRPNVGKSTLLNNIIGTKLSIVSPRPQTTRMRILGVKHLPDAQIIFLDTPG 69 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL 305 +++ D++ K ++ +E+AD+IL++ Sbjct: 70 VQKGGDLLTKSVMESVVSGIESADVILMV 98 >gi|298490731|ref|YP_003720908.1| GTP-binding protein Era ['Nostoc azollae' 0708] gi|298232649|gb|ADI63785.1| GTP-binding protein Era ['Nostoc azollae' 0708] Length = 318 Score = 43.1 bits (100), Expect = 0.092, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 1/89 (1%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 ++G+ I I+G N GKS+L N L + +AI + I TTR+ L L + + DT G Sbjct: 25 KSGF-IGIIGRPNVGKSTLMNQLVGQKIAITSPIAQTTRNRLRGILTTDKAQLIFVDTPG 83 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL 305 I + + + +K + +E+ D++L + Sbjct: 84 IHQPHHQLGEVLVKNAKIAIESVDVVLFV 112 >gi|185179024|ref|ZP_02964773.1| GTP-binding protein Era [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188024049|ref|ZP_02996802.1| GTP-binding protein Era [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188518321|ref|ZP_03003835.1| GTP-binding protein Era [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|188524324|ref|ZP_03004361.1| GTP-binding protein Era [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195867961|ref|ZP_03079958.1| GTP-binding protein Era [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198273309|ref|ZP_03205845.1| GTP-binding protein Era [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209554232|ref|YP_002284938.1| GTP-binding protein Era [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225550907|ref|ZP_03771856.1| GTP-binding protein [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225551511|ref|ZP_03772457.1| GTP-binding protein [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|226741403|sp|B5ZBZ8|ERA_UREU1 RecName: Full=GTPase Era gi|184209115|gb|EDU06158.1| GTP-binding protein Era [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188019082|gb|EDU57122.1| GTP-binding protein Era [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188998143|gb|EDU67240.1| GTP-binding protein Era [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195659806|gb|EDX53186.1| GTP-binding protein Era [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195660357|gb|EDX53617.1| GTP-binding protein Era [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198249829|gb|EDY74609.1| GTP-binding protein Era [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209541733|gb|ACI59962.1| GTP-binding protein Era [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225379326|gb|EEH01691.1| GTP-binding protein [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|225380061|gb|EEH02423.1| GTP-binding protein [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 300 Score = 43.1 bits (100), Expect = 0.092, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 35/58 (60%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 + I+G N GKS+L NA+ +K V+I+++ P TTR+ + + + + +DT G E Sbjct: 8 VAIVGKPNVGKSTLINAIMRKKVSIISNKPQTTRNAIKEIYEDDDSAIIFTDTPGFHE 65 >gi|13470637|ref|NP_102206.1| GTP binding protein-like [Mesorhizobium loti MAFF303099] gi|14021379|dbj|BAB47992.1| GTP binding protein-like [Mesorhizobium loti MAFF303099] Length = 431 Score = 43.1 bits (100), Expect = 0.092, Method: Compositional matrix adjust. Identities = 47/180 (26%), Positives = 79/180 (43%), Gaps = 29/180 (16%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280 + I+G++NAGKS+LFN L DV + D+ T D + L G + +SDT G Sbjct: 201 VAIVGYTNAGKSTLFNRLTGADV-LAQDMLFATLDPTLRRVRLPHGTPIILSDTVGFISD 259 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI------------------------NSKKEISF 316 + T EV ADL++ L++I ++K+ I Sbjct: 260 LPTHLIAAFRATLEEVVEADLVIHLRDISDPDTAAQAEDVERILADLGVDAGDTKRVIEV 319 Query: 317 PKNIDFIFIGTKSDLYSTYTEEYDH---LISSFTGEGLEELINKIKSILSNKFKKLPFSI 373 +D + G +S L + + IS+ TGEG+E L I++ ++ + + L +I Sbjct: 320 WNKVDLLDEGNRSRLLADAVDGSKGPPIAISAVTGEGIEALKAVIETRMAGELEDLTVTI 379 >gi|308370797|ref|ZP_07422773.2| GTP-binding protein engA [Mycobacterium tuberculosis SUMu003] gi|308330810|gb|EFP19661.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu003] Length = 308 Score = 43.1 bits (100), Expect = 0.092, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 35/59 (59%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 ++ ++G N GKSSL N LA ++V + GTT D + ++L G + + DTAG+R Sbjct: 46 RVALVGKPNVGKSSLLNKLAGDQRSVVHEAAGTTVDPVDSLIELGGDVWRFVDTAGLRR 104 >gi|293569277|ref|ZP_06680575.1| nitric-oxide synthase [Enterococcus faecium E1071] gi|291587983|gb|EFF19833.1| nitric-oxide synthase [Enterococcus faecium E1071] Length = 369 Score = 43.1 bits (100), Expect = 0.092, Method: Compositional matrix adjust. Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 15/100 (15%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 R+G + I+G +N GKS+L N + K +DV + PGTT D + I LD +L+ Sbjct: 162 RDGRDVYIVGVTNVGKSTLINQIIKNTAGVQDVITTSQFPGTTLDKIEIPLDDGHFLI-- 219 Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311 DT GI + +L ++ +I LKEI K Sbjct: 220 -DTPGIIHRHQMAH-------YLGKKDLRIIAPLKEIKPK 251 >gi|288958024|ref|YP_003448365.1| GTP-binding protein [Azospirillum sp. B510] gi|288910332|dbj|BAI71821.1| GTP-binding protein [Azospirillum sp. B510] Length = 301 Score = 43.1 bits (100), Expect = 0.092, Method: Compositional matrix adjust. Identities = 44/188 (23%), Positives = 86/188 (45%), Gaps = 37/188 (19%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTA 275 R G+ I ++G NAGKS+L NA+ V+IV+ TTR VL I + + ++ + DT Sbjct: 6 RCGF-IALVGAPNAGKSTLLNAMIGSKVSIVSPKVQTTRTRVLGITIQGDAQMIFV-DTP 63 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEIN------------------SKKEISFP 317 GI + +++ + + E+AD+I +L +++ ++ I Sbjct: 64 GIFKPKRRLDRAMVAAAWQGAEDADVIGVLYDVSRRSIDEDTRSIVARLKEQGREAILIL 123 Query: 318 KNIDFIFIGTKSDLYSTYTEEYDH--------LISSFTGEGLEELINKIKSILSNKFKKL 369 ID + K D+ + + ++S+FT +G+ +L K L+++ + Sbjct: 124 NKIDLV----KRDVLLGIADAFRQEGIFSDIFMVSAFTEDGVGDL----KQFLADRLPEG 175 Query: 370 PFSIPSHK 377 P+ P + Sbjct: 176 PWHFPEDQ 183 >gi|167625539|ref|YP_001675833.1| GTP1/OBG protein [Shewanella halifaxensis HAW-EB4] gi|167355561|gb|ABZ78174.1| GTP1/OBG protein [Shewanella halifaxensis HAW-EB4] Length = 431 Score = 43.1 bits (100), Expect = 0.092, Method: Compositional matrix adjust. Identities = 51/188 (27%), Positives = 77/188 (40%), Gaps = 40/188 (21%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRE- 279 + ++G++NAGKS+LFN L DV + T L LDL V ++DT G IR Sbjct: 200 VSLVGYTNAGKSTLFNGLTTSDVYAADQLFATLDPTLR-KLDLPDGAVILADTVGFIRHL 258 Query: 280 TDDIVEKEGIKRTFLEVENADLIL-------------------LLKEINSKKEISFPKNI 320 D+V K T E ADL+L +LKEI++ I P+ Sbjct: 259 PHDLV--AAFKATLQETRQADLLLHVVDSADEKMGDNFKQVQNVLKEIDA---IEIPQ-- 311 Query: 321 DFIFIGTKSDLYSTYTEEYDH---------LISSFTGEGLEELINKIKSILSNKFKKLPF 371 + + K DL D+ +S+ +GLE + I ++ +L Sbjct: 312 --LIVCNKIDLLDEVKPRIDYDDEGTPIRVWVSAQQHKGLELVEEAINQLVGKAILELTL 369 Query: 372 SIPSHKRH 379 IP+ H Sbjct: 370 QIPASAGH 377 >gi|255101596|ref|ZP_05330573.1| GTP-binding protein Era [Clostridium difficile QCD-63q42] Length = 297 Score = 43.1 bits (100), Expect = 0.093, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 44/84 (52%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+L N + + +AI++D P TTR+ + E + DT GI + Sbjct: 7 VSIVGRPNVGKSTLMNNVVGEKIAIMSDKPQTTRNTIQAVYTDEEMQIVFLDTPGIHKPK 66 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 + + + +K +N DLIL + Sbjct: 67 NKLGEFMVKAATEAFKNVDLILFV 90 >gi|255593008|ref|XP_002535771.1| GTP-binding protein enga, putative [Ricinus communis] gi|223522018|gb|EEF26612.1| GTP-binding protein enga, putative [Ricinus communis] Length = 236 Score = 43.1 bits (100), Expect = 0.093, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 37/59 (62%), Gaps = 3/59 (5%) Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI---VEKEGIKRTFLEVENADLILLL 305 +PGTTRD + ID + +G + DTAG+R + +EK + +T +E+A++++L+ Sbjct: 1 MPGTTRDSIHIDFERDGKQYTLVDTAGVRRRGKVFEAIEKFSVIKTLQAIEDANVVVLV 59 >gi|126700053|ref|YP_001088950.1| GTP-binding protein Era [Clostridium difficile 630] gi|254976030|ref|ZP_05272502.1| GTP-binding protein Era [Clostridium difficile QCD-66c26] gi|255093418|ref|ZP_05322896.1| GTP-binding protein Era [Clostridium difficile CIP 107932] gi|255307465|ref|ZP_05351636.1| GTP-binding protein Era [Clostridium difficile ATCC 43255] gi|255315163|ref|ZP_05356746.1| GTP-binding protein Era [Clostridium difficile QCD-76w55] gi|255517832|ref|ZP_05385508.1| GTP-binding protein Era [Clostridium difficile QCD-97b34] gi|255650948|ref|ZP_05397850.1| GTP-binding protein Era [Clostridium difficile QCD-37x79] gi|255656417|ref|ZP_05401826.1| GTP-binding protein Era [Clostridium difficile QCD-23m63] gi|260684017|ref|YP_003215302.1| GTP-binding protein [Clostridium difficile CD196] gi|260687677|ref|YP_003218811.1| GTP-binding protein [Clostridium difficile R20291] gi|296450136|ref|ZP_06891897.1| GTP-binding protein Era [Clostridium difficile NAP08] gi|296878517|ref|ZP_06902522.1| GTP-binding protein Era [Clostridium difficile NAP07] gi|306520828|ref|ZP_07407175.1| GTP-binding protein [Clostridium difficile QCD-32g58] gi|122973603|sp|Q182C3|ERA_CLOD6 RecName: Full=GTPase Era gi|115251490|emb|CAJ69323.1| GTP-binding protein Era [Clostridium difficile] gi|260210180|emb|CBA64374.1| GTP-binding protein [Clostridium difficile CD196] gi|260213694|emb|CBE05565.1| GTP-binding protein [Clostridium difficile R20291] gi|296260899|gb|EFH07733.1| GTP-binding protein Era [Clostridium difficile NAP08] gi|296430324|gb|EFH16166.1| GTP-binding protein Era [Clostridium difficile NAP07] Length = 297 Score = 43.1 bits (100), Expect = 0.093, Method: Compositional matrix adjust. Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 1/91 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+L N + + +AI++D P TTR+ + E + DT GI + Sbjct: 7 VSIVGRPNVGKSTLMNNVVGEKIAIMSDKPQTTRNTIQAVYTDEEMQIVFLDTPGIHKPK 66 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK 312 + + + +K +N DLIL + + +SKK Sbjct: 67 NKLGEFMVKAATEAFKNVDLILFVVD-DSKK 96 >gi|332201172|gb|EGJ15243.1| GTPase family protein [Streptococcus pneumoniae GA47901] Length = 368 Score = 43.1 bits (100), Expect = 0.094, Method: Compositional matrix adjust. Identities = 48/174 (27%), Positives = 74/174 (42%), Gaps = 45/174 (25%) Query: 151 SGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQG 210 SG++S QW+ K H D+ + ++ + KEV++ I Sbjct: 118 SGKIS----QWLMKRAHEEGLRPVDVVLTSAQN--KHAIKEVIDKI-------------- 157 Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLE 265 E R G + ++G +N GKS+L NA+ + ++V + PGTT D + I LD Sbjct: 158 ---EHYRKGRDVYVVGVTNVGKSTLINAIIQEITGDQNVITTSRFPGTTLDKIEIPLDDG 214 Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319 Y I DT GI + +L +N LK ++ KKEI PK Sbjct: 215 SY---IYDTPGIIHRHQMAH-------YLTAKN------LKYVSPKKEIK-PKT 251 >gi|68171944|ref|ZP_00545257.1| Small GTP-binding protein domain:GTP-binding protein Era [Ehrlichia chaffeensis str. Sapulpa] gi|67998634|gb|EAM85374.1| Small GTP-binding protein domain:GTP-binding protein Era [Ehrlichia chaffeensis str. Sapulpa] Length = 296 Score = 43.1 bits (100), Expect = 0.094, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 75/162 (46%), Gaps = 21/162 (12%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 I+G +NAGKS+L N L + VA VT TTR + L+ E + DT GI Sbjct: 13 IVGTTNAGKSTLINMLVGQKVAAVTPKVQTTRVRMHAVLNNENVQLIFIDTPGIFSPKTK 72 Query: 284 VEKEGIKRTFLEVENADLILLLKEINS------KKEISFPK--NIDFIFIGTKSD----- 330 +EK +K ++ ++ + ++LL ++ + ++ IS K NI+ I + K D Sbjct: 73 LEKFIVKHAWMSLKGIENVILLLDVKNYLNKHIERIISRIKQSNINAILVVNKIDTVPTS 132 Query: 331 --------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364 +YS ++ IS+ GL L++ + I N Sbjct: 133 SVDKAIEHMYSLHSFSKTFTISALHDIGLSRLVDYLCEISPN 174 >gi|317502138|ref|ZP_07960316.1| GTP-binding protein Era [Lachnospiraceae bacterium 8_1_57FAA] gi|331090350|ref|ZP_08339233.1| GTP-binding protein Era [Lachnospiraceae bacterium 3_1_46FAA] gi|316896455|gb|EFV18548.1| GTP-binding protein Era [Lachnospiraceae bacterium 8_1_57FAA] gi|330401305|gb|EGG80893.1| GTP-binding protein Era [Lachnospiraceae bacterium 3_1_46FAA] Length = 298 Score = 43.1 bits (100), Expect = 0.095, Method: Compositional matrix adjust. Identities = 42/171 (24%), Positives = 71/171 (41%), Gaps = 28/171 (16%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+L N L + +AI ++ P TTR+ + L E + DT GI + Sbjct: 10 VTLIGRPNVGKSTLMNHLIGQKIAITSNKPQTTRNRIQTVLTTEEGQIVFVDTPGIHKAK 69 Query: 282 DIVEKEGIKRTFLEVENADLILLLKE------------INSKKEISFP-----KNIDFIF 324 + + + + + D++L L E I K++ P ID + Sbjct: 70 NKLGEYMVNIAERSLNEVDVVLWLVEPSAFIGAGDRHIIEQLKKVKTPVVLVINKIDMVK 129 Query: 325 IGTKSDLYSTYTEEYDHL----ISSFTGEGLEELINKIKSILSNKFKKLPF 371 Y +EYD +S+ +G+ +ELI I K LP+ Sbjct: 130 KEEILTFIDAYRKEYDFAEIVPVSARSGDNTDELIKVI-------LKYLPY 173 >gi|254780941|ref|YP_003065354.1| GTP-binding protein Era [Candidatus Liberibacter asiaticus str. psy62] gi|254040618|gb|ACT57414.1| GTP-binding protein Era [Candidatus Liberibacter asiaticus str. psy62] Length = 311 Score = 43.1 bits (100), Expect = 0.095, Method: Compositional matrix adjust. Identities = 27/93 (29%), Positives = 51/93 (54%), Gaps = 2/93 (2%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G +NAGKS+L N V+IVT TTR ++ + + + DT GI Sbjct: 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAK 84 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314 D K I+ ++ +++AD++ L+ ++S +E+ Sbjct: 85 DSYHKLMIRLSWSTIKHADIVCLV--VDSHREL 115 >gi|322831157|ref|YP_004211184.1| GTP-binding proten HflX [Rahnella sp. Y9602] gi|321166358|gb|ADW72057.1| GTP-binding proten HflX [Rahnella sp. Y9602] Length = 434 Score = 43.1 bits (100), Expect = 0.096, Method: Compositional matrix adjust. Identities = 47/202 (23%), Positives = 83/202 (41%), Gaps = 39/202 (19%) Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD----IPGTTRDVL 258 ++ QG+ + + + ++G++NAGKS+LFN + + DV + + T R ++ Sbjct: 181 VAKQREQGRRSRVRADIPTVSLVGYTNAGKSTLFNRITQADVYVANQLFATLDPTLRRII 240 Query: 259 TIDLDLEGYLVKISDTAG-IRE-TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF 316 D+ G V ++DT G IR D+V K T E A L+L + +I Sbjct: 241 VADV---GETV-LADTVGFIRHLPHDLV--AAFKATLQETRQASLLL---HVIDAADIRV 291 Query: 317 PKNIDFI---------------FIGTKSDLYSTYTEEYDH---------LISSFTGEGLE 352 +NID + + K D+ + D +S+ TGEG+ Sbjct: 292 QENIDAVNTVLAEIEADEIPALLVMNKIDMLDDFVPRIDRNEENLPVRVWLSAVTGEGIP 351 Query: 353 ELINKIKSILSNKFKKLPFSIP 374 L + LS + + +P Sbjct: 352 LLFQALTERLSGEIAQHELCLP 373 >gi|317051090|ref|YP_004112206.1| ribosome biogenesis GTP-binding protein YsxC [Desulfurispirillum indicum S5] gi|316946174|gb|ADU65650.1| ribosome biogenesis GTP-binding protein YsxC [Desulfurispirillum indicum S5] Length = 204 Score = 43.1 bits (100), Expect = 0.096, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%) Query: 221 KIVILGHSNAGKSSLFNAL-AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 +IV LG SN GKSSL NA+ ++++AI + PG TR + D++ + Y V + Sbjct: 29 EIVFLGRSNVGKSSLINAVTGRRNIAITSKTPGRTRLINYFDVNGDLYCVDL 80 >gi|326203513|ref|ZP_08193377.1| GTP-binding protein Era [Clostridium papyrosolvens DSM 2782] gi|325986333|gb|EGD47165.1| GTP-binding protein Era [Clostridium papyrosolvens DSM 2782] Length = 298 Score = 43.1 bits (100), Expect = 0.096, Method: Compositional matrix adjust. Identities = 28/96 (29%), Positives = 54/96 (56%), Gaps = 3/96 (3%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-IDLDLEGYLVKISDTA 275 ++G+ + ++G N GKS+L N + + +AI++D P TTR+ + + + E L+ I DT Sbjct: 4 KSGF-VSVIGRPNVGKSTLLNTITGQKIAIMSDKPQTTRNTIRGVITNKECQLILI-DTP 61 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311 GI + + + + ++ DL+L L E N++ Sbjct: 62 GIHKPKTKLGEYMVNVASETIKEVDLVLFLVEANAQ 97 >gi|91204564|emb|CAJ70792.1| similar to ATP/GTP-binding protein [Candidatus Kuenenia stuttgartiensis] Length = 431 Score = 43.1 bits (100), Expect = 0.096, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 26/123 (21%) Query: 206 HISQGKLGEIIRNGYKIV----------ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255 H + +LGEI + ++V I+G++NAGKS+L NAL TD+ Sbjct: 179 HDLKKRLGEIEKRQQRVVASRKEFSTVSIVGYTNAGKSTLMNAL--------TDVDAMVE 230 Query: 256 DVLTIDLDLEGYLVKISDTAGIRETDDI--VEK------EGIKRTFLEVENADLILLLKE 307 D L LD + + K+ ++ I +D + ++K K T E NAD++L + + Sbjct: 231 DKLFATLDTKTGICKLENSKNILISDTVGFIQKLPHYLVSSFKATLEETRNADILLHVAD 290 Query: 308 INS 310 I+S Sbjct: 291 ISS 293 >gi|18312175|ref|NP_558842.1| hypothetical protein PAE0782 [Pyrobaculum aerophilum str. IM2] gi|18159611|gb|AAL63024.1| conserved protein (possible hflX) [Pyrobaculum aerophilum str. IM2] Length = 386 Score = 43.1 bits (100), Expect = 0.096, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 62/121 (51%), Gaps = 12/121 (9%) Query: 206 HISQGKLGEIIRNGYK----IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261 I +G+ I++ K +V+ G+++AGK++LFN+L ++ +V P T + + Sbjct: 168 EIKRGRAMHIMKRKEKGVPEVVLTGYTSAGKTTLFNSLVNEN-KLVDGRPFATLETYSRA 226 Query: 262 LDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILL-------LKEINSKKEI 314 LDL G + ++DT G + + E T E+ +AD ILL L+EI K E Sbjct: 227 LDLWGKRIVLTDTIGFIDDLPPLLIESFYSTLQEIIDADRILLVIDGSEPLEEITRKVET 286 Query: 315 S 315 S Sbjct: 287 S 287 >gi|332976612|gb|EGK13453.1| ribosome biogenesis GTP-binding protein YlqF [Desmospora sp. 8437] Length = 296 Score = 43.1 bits (100), Expect = 0.096, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 7/80 (8%) Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV 257 +K ++S +G I R+ + +++G N GKS+L N LA + A D PG TR+ Sbjct: 103 LVKEKLASQTRKG----IRRHRIRAMVVGVPNVGKSALINRLAGRSTAKTGDRPGVTRNQ 158 Query: 258 LTIDLDLEGYLVKISDTAGI 277 I L G +++ DT GI Sbjct: 159 QWIKL---GNGMELLDTPGI 175 >gi|115390012|ref|XP_001212511.1| conserved hypothetical protein [Aspergillus terreus NIH2624] gi|114194907|gb|EAU36607.1| conserved hypothetical protein [Aspergillus terreus NIH2624] Length = 312 Score = 43.1 bits (100), Expect = 0.096, Method: Compositional matrix adjust. Identities = 42/192 (21%), Positives = 81/192 (42%), Gaps = 27/192 (14%) Query: 167 HIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISS----HISQGKLGEIIRNGYKI 222 +R ADL + + V + + V D F + S S+ + + + ++ Sbjct: 37 QLRDLTPADLSYYWDTQVPD-EQRLVYADKFFSPSRHSPVKLWSASKFRTTPLSSSEPEV 95 Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-------------IDLDLEGYLV 269 LG SN GKSSL NA+ K++ + PG TR++ + LD+ GY Sbjct: 96 AFLGRSNVGKSSLLNAVMGKEMCWTSSKPGRTREMNAFGIGGTKGGESKIVLLDMPGYGK 155 Query: 270 KISDTAGIRETDDIVEKEGIKRTFLEVE--------NADLILLLKEINSKKEISFPKNID 321 G+ + ++ ++R FL ++ +AD+++L ++ ++ K +D Sbjct: 156 ASRTEWGVEIMKYLQGRKQLRRAFLLIDSLHGIKQSDADILMLFRKYAIPHQVILSK-VD 214 Query: 322 FIFIGTKSDLYS 333 + KS + S Sbjct: 215 KVLAKKKSQVKS 226 >gi|257883040|ref|ZP_05662693.1| GTP-binding protein YqeH [Enterococcus faecium 1,231,502] gi|294621391|ref|ZP_06700563.1| nitric-oxide synthase [Enterococcus faecium U0317] gi|257818698|gb|EEV46026.1| GTP-binding protein YqeH [Enterococcus faecium 1,231,502] gi|291599038|gb|EFF30083.1| nitric-oxide synthase [Enterococcus faecium U0317] Length = 369 Score = 43.1 bits (100), Expect = 0.097, Method: Compositional matrix adjust. Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 15/100 (15%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 R+G + I+G +N GKS+L N + K +DV + PGTT D + I LD +L+ Sbjct: 162 RDGRDVYIVGVTNVGKSTLINQIIKNTAGVQDVITTSQFPGTTLDKIEIPLDDGHFLI-- 219 Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311 DT GI + +L ++ +I LKEI K Sbjct: 220 -DTPGIIHRHQMAH-------YLGKKDLRIIAPLKEIKPK 251 >gi|256026685|ref|ZP_05440519.1| GTP-binding protein Era [Fusobacterium sp. D11] gi|289764681|ref|ZP_06524059.1| GTP binding protein [Fusobacterium sp. D11] gi|289716236|gb|EFD80248.1| GTP binding protein [Fusobacterium sp. D11] Length = 298 Score = 43.1 bits (100), Expect = 0.097, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 44/84 (52%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+L N L + VAIV+D GTTRD + L+ + DT GI + Sbjct: 6 IAVVGRPNVGKSTLINKLVSEKVAIVSDKAGTTRDNIKGILNFKDNQYIFIDTPGIHKPQ 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + +++ D+IL L Sbjct: 66 HLLGEYMTNIAVNILKDVDIILFL 89 >gi|69245736|ref|ZP_00603602.1| GTP-binding protein, HSR1-related [Enterococcus faecium DO] gi|257880239|ref|ZP_05659892.1| GTP-binding protein YqeH [Enterococcus faecium 1,230,933] gi|257885285|ref|ZP_05664938.1| GTP-binding protein YqeH [Enterococcus faecium 1,231,501] gi|257891377|ref|ZP_05671030.1| GTP-binding protein YqeH [Enterococcus faecium 1,231,410] gi|257893626|ref|ZP_05673279.1| GTP-binding protein YqeH [Enterococcus faecium 1,231,408] gi|258614428|ref|ZP_05712198.1| GTP-binding protein YqeH [Enterococcus faecium DO] gi|260560463|ref|ZP_05832637.1| GTP-binding protein YqeH [Enterococcus faecium C68] gi|261208980|ref|ZP_05923385.1| GTP-binding protein YqeH [Enterococcus faecium TC 6] gi|289565208|ref|ZP_06445660.1| ribosome biogenesis GTPase YqeH [Enterococcus faecium D344SRF] gi|293563281|ref|ZP_06677731.1| nitric-oxide synthase [Enterococcus faecium E1162] gi|294619096|ref|ZP_06698591.1| nitric-oxide synthase [Enterococcus faecium E1679] gi|314939219|ref|ZP_07846473.1| ribosome biogenesis GTPase YqeH [Enterococcus faecium TX0133a04] gi|314942037|ref|ZP_07848895.1| ribosome biogenesis GTPase YqeH [Enterococcus faecium TX0133C] gi|314948390|ref|ZP_07851779.1| ribosome biogenesis GTPase YqeH [Enterococcus faecium TX0082] gi|314951244|ref|ZP_07854299.1| ribosome biogenesis GTPase YqeH [Enterococcus faecium TX0133A] gi|314991667|ref|ZP_07857137.1| ribosome biogenesis GTPase YqeH [Enterococcus faecium TX0133B] gi|314996793|ref|ZP_07861806.1| ribosome biogenesis GTPase YqeH [Enterococcus faecium TX0133a01] gi|68195629|gb|EAN10069.1| GTP-binding protein, HSR1-related [Enterococcus faecium DO] gi|257814467|gb|EEV43225.1| GTP-binding protein YqeH [Enterococcus faecium 1,230,933] gi|257821137|gb|EEV48271.1| GTP-binding protein YqeH [Enterococcus faecium 1,231,501] gi|257827737|gb|EEV54363.1| GTP-binding protein YqeH [Enterococcus faecium 1,231,410] gi|257830005|gb|EEV56612.1| GTP-binding protein YqeH [Enterococcus faecium 1,231,408] gi|260073465|gb|EEW61793.1| GTP-binding protein YqeH [Enterococcus faecium C68] gi|260077019|gb|EEW64741.1| GTP-binding protein YqeH [Enterococcus faecium TC 6] gi|289163029|gb|EFD10877.1| ribosome biogenesis GTPase YqeH [Enterococcus faecium D344SRF] gi|291594757|gb|EFF26139.1| nitric-oxide synthase [Enterococcus faecium E1679] gi|291604733|gb|EFF34217.1| nitric-oxide synthase [Enterococcus faecium E1162] gi|313589088|gb|EFR67933.1| ribosome biogenesis GTPase YqeH [Enterococcus faecium TX0133a01] gi|313593758|gb|EFR72603.1| ribosome biogenesis GTPase YqeH [Enterococcus faecium TX0133B] gi|313596596|gb|EFR75441.1| ribosome biogenesis GTPase YqeH [Enterococcus faecium TX0133A] gi|313599163|gb|EFR78008.1| ribosome biogenesis GTPase YqeH [Enterococcus faecium TX0133C] gi|313641470|gb|EFS06050.1| ribosome biogenesis GTPase YqeH [Enterococcus faecium TX0133a04] gi|313645182|gb|EFS09762.1| ribosome biogenesis GTPase YqeH [Enterococcus faecium TX0082] Length = 369 Score = 43.1 bits (100), Expect = 0.097, Method: Compositional matrix adjust. Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 15/100 (15%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 R+G + I+G +N GKS+L N + K +DV + PGTT D + I LD +L+ Sbjct: 162 RDGRDVYIVGVTNVGKSTLINQIIKNTAGVQDVITTSQFPGTTLDKIEIPLDDGHFLI-- 219 Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311 DT GI + +L ++ +I LKEI K Sbjct: 220 -DTPGIIHRHQMAH-------YLGKKDLRIIAPLKEIKPK 251 >gi|293374269|ref|ZP_06620597.1| ribosome biogenesis GTPase YqeH [Turicibacter sanguinis PC909] gi|325844831|ref|ZP_08168283.1| ribosome biogenesis GTPase YqeH [Turicibacter sp. HGF1] gi|292647102|gb|EFF65084.1| ribosome biogenesis GTPase YqeH [Turicibacter sanguinis PC909] gi|325489018|gb|EGC91406.1| ribosome biogenesis GTPase YqeH [Turicibacter sp. HGF1] Length = 369 Score = 43.1 bits (100), Expect = 0.098, Method: Compositional matrix adjust. Identities = 33/107 (30%), Positives = 49/107 (45%), Gaps = 22/107 (20%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKK------DVAIVTDIPGTTRDVLTIDLDLEGY 267 E R G + I+G +N GKS+L N + K+ D+ + PGTT D++ I LD Sbjct: 157 EKYRKGRDVYIVGCTNVGKSTLVNRIIKRFTEEREDIITTSHFPGTTLDIIEIPLD---- 212 Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314 D + I +T I+ + + +LKEI KKEI Sbjct: 213 -----DCSAIVDTPGIINEHQLAHYVTPK-------VLKEITPKKEI 247 >gi|297735123|emb|CBI17485.3| unnamed protein product [Vitis vinifera] Length = 320 Score = 43.1 bits (100), Expect = 0.098, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 58/113 (51%), Gaps = 15/113 (13%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R+GY + +LG N GKS+L N + + ++IVTD P TTR + Y + + DT G Sbjct: 21 RSGY-VAVLGKPNVGKSTLANQMIGQKLSIVTDKPQTTRHRILGICSGPEYQMILYDTPG 79 Query: 277 IRET-----DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF 324 + E D ++ K T NAD +++L +++ KE P+ ID + Sbjct: 80 VIEKKMHKLDSMMMKNVRSATI----NADCVVVL--VDACKE---PQKIDEVL 123 >gi|225570970|ref|ZP_03779993.1| hypothetical protein CLOHYLEM_07074 [Clostridium hylemonae DSM 15053] gi|225160432|gb|EEG73051.1| hypothetical protein CLOHYLEM_07074 [Clostridium hylemonae DSM 15053] Length = 311 Score = 43.1 bits (100), Expect = 0.098, Method: Compositional matrix adjust. Identities = 33/108 (30%), Positives = 57/108 (52%), Gaps = 10/108 (9%) Query: 206 HISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262 H+ K GE ++ +K + ++G N GKS+L N L + +AI ++ P TTR+ + L Sbjct: 5 HVPDEK-GERMKKDFKSGFVTLIGRPNVGKSTLMNHLIGQKIAITSNKPQTTRNRIQTVL 63 Query: 263 DLEGYLVKISDTAGIRETDDIVEKEGI---KRTFLEVENADLILLLKE 307 L+ + DT GI + + + + + +RT EV D++L L E Sbjct: 64 TLQDGQIVFVDTPGIHKAKNKLGEYMVNIAERTLNEV---DVVLWLVE 108 >gi|134094497|ref|YP_001099572.1| GTPase [Herminiimonas arsenicoxydans] Length = 338 Score = 43.1 bits (100), Expect = 0.098, Method: Compositional matrix adjust. Identities = 54/181 (29%), Positives = 83/181 (45%), Gaps = 29/181 (16%) Query: 200 KNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259 K I+ ++G+ N + + ++G++NAGKS+LFNALAK + + D T D + Sbjct: 141 KQHITQRRARGR-----NNAFSVSLVGYTNAGKSTLFNALAKTKM-LAADQLFATLDTTS 194 Query: 260 IDLDL-EGYLVKISDTAG-IRETDDIVEKEGIKRTFLEVENADLIL------------LL 305 + L E V ISDT G IRE + + T E +ADL+L + Sbjct: 195 RRIYLGEAGNVVISDTVGFIRELPHQL-VAAFRATLEETIHADLLLHVVDGASPARMEQI 253 Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLY----STYTEEYDHL----ISSFTGEGLEELINK 357 +E+N+ I I + K D + +EYD + IS+ TG GL+ L Sbjct: 254 EEVNAVLREIGADQIPQILVWNKIDAAGLEPALERDEYDKIRRVFISAQTGSGLDLLREA 313 Query: 358 I 358 I Sbjct: 314 I 314 >gi|323703320|ref|ZP_08114970.1| GTP-binding protein Era [Desulfotomaculum nigrificans DSM 574] gi|323531683|gb|EGB21572.1| GTP-binding protein Era [Desulfotomaculum nigrificans DSM 574] Length = 302 Score = 43.1 bits (100), Expect = 0.099, Method: Compositional matrix adjust. Identities = 42/193 (21%), Positives = 81/193 (41%), Gaps = 22/193 (11%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R+G+ + ++G N GKS+L N L + VAI++D P TTR + L + DT G Sbjct: 9 RSGF-VALVGRPNVGKSTLLNKLVGQKVAIMSDKPQTTRHKIHSVLSRNDAQIVFLDTPG 67 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK------------KEISFP-----KN 319 I + + + + ++ D++L L E KEI P Sbjct: 68 IHKPRHKLGEYMVDVALGALKEVDVVLFLVEATGPPGAGDRYIAEQLKEIKTPVFLLINK 127 Query: 320 IDFIFIGTKSDLYSTYTEEYDHL----ISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375 +D + + +Y + D +S+ GE ++ L++ I L + P + + Sbjct: 128 VDLVKKEEVLERIVSYKDLLDFAEVVPVSALAGENVDRLVDTIVQYLPEGPQYYPADMVT 187 Query: 376 HKRHLYHLSQTVR 388 + + +++ +R Sbjct: 188 DRPERFIMAEIIR 200 >gi|322419360|ref|YP_004198583.1| small GTP-binding protein [Geobacter sp. M18] gi|320125747|gb|ADW13307.1| small GTP-binding protein [Geobacter sp. M18] Length = 408 Score = 43.1 bits (100), Expect = 0.099, Method: Compositional matrix adjust. Identities = 28/64 (43%), Positives = 41/64 (64%), Gaps = 6/64 (9%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDTAGIRE 279 I + G N GKSSL NAL ++ ++IV+D+ GTT D + ++L G ++ I DTAGI Sbjct: 12 IGLFGRRNVGKSSLLNALTRQTISIVSDVAGTTTDPVEKPMELLPIGPVLFI-DTAGI-- 68 Query: 280 TDDI 283 DD+ Sbjct: 69 -DDV 71 >gi|207110172|ref|ZP_03244334.1| GTP-binding protein EngA [Helicobacter pylori HPKX_438_CA4C1] Length = 126 Score = 43.1 bits (100), Expect = 0.099, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 36/58 (62%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 ++ I+G N GKSSL NAL KK+ ++V+ + GTT D + + + + DTAGIR Sbjct: 56 QVGIIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVDTAGIR 113 >gi|166363299|ref|YP_001655572.1| GTP-binding protein [Microcystis aeruginosa NIES-843] gi|166085672|dbj|BAG00380.1| GTP-binding protein [Microcystis aeruginosa NIES-843] Length = 522 Score = 43.1 bits (100), Expect = 0.099, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 62/127 (48%), Gaps = 13/127 (10%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY--LVKISDT 274 R KI++ G +AGK+SL NAL + V V GTT T L ++G ++I+DT Sbjct: 131 RKEVKIIVFGTGSAGKTSLINALIGQMVGNVEATMGTTEKGETYSLKMKGVNREIQITDT 190 Query: 275 AGIRETDDI-VEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKS---- 329 GI E ++E + R ADL+L + + N ++ + + I IG +S Sbjct: 191 PGILEIGAAGGQREQLARQL--ATEADLLLFVID-NDIRQSEYGPLLRLIDIGKRSLLVF 247 Query: 330 ---DLYS 333 DLYS Sbjct: 248 NKIDLYS 254 >gi|307709298|ref|ZP_07645756.1| conserved hypothetical protein [Streptococcus mitis SK564] gi|307619881|gb|EFN98999.1| conserved hypothetical protein [Streptococcus mitis SK564] Length = 283 Score = 43.1 bits (100), Expect = 0.100, Method: Compositional matrix adjust. Identities = 31/82 (37%), Positives = 43/82 (52%), Gaps = 11/82 (13%) Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-- 255 + N I+ +G E +R +I+G NAGKS+L N LA K +A+V + PG T+ Sbjct: 104 LMANKIARQKERGIKIETLRT----MIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQ 159 Query: 256 DVLTIDLDLEGYLVKISDTAGI 277 L + DLE I DT GI Sbjct: 160 QWLKTNKDLE-----ILDTPGI 176 >gi|297181617|gb|ADI17801.1| GTPase [uncultured Sphingobacteriales bacterium HF0130_33B19] Length = 292 Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust. Identities = 27/95 (28%), Positives = 53/95 (55%), Gaps = 1/95 (1%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 + GY + I+G+ N GKS+L NAL ++I+T TTR + L+ + + + SDT G Sbjct: 4 KAGY-VNIIGNPNVGKSTLMNALIGHKLSIITPKAQTTRHRILGILNEKDFQIVFSDTPG 62 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311 + + +++ + + + +AD+++ + EI K Sbjct: 63 VIDPSYKLQENMMNFVYSALHDADVLIYMIEIGEK 97 >gi|218883384|ref|YP_002427766.1| Ferrous iron transport protein B [Desulfurococcus kamchatkensis 1221n] gi|218765000|gb|ACL10399.1| Ferrous iron transport protein B [Desulfurococcus kamchatkensis 1221n] Length = 698 Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 1/87 (1%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+V +G N GKSSLFN + K V V + PG T V ++ Y + + D GI Sbjct: 10 KVVFIGQPNVGKSSLFNLVTKSHVE-VGNWPGKTVVVHKGEITYGSYQLILYDLPGIYGF 68 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE 307 + ++E + R + E D+I+++ + Sbjct: 69 STLTQEEIVAREAILAEKPDVIIVVAD 95 >gi|210621260|ref|ZP_03292566.1| hypothetical protein CLOHIR_00509 [Clostridium hiranonis DSM 13275] gi|210154871|gb|EEA85877.1| hypothetical protein CLOHIR_00509 [Clostridium hiranonis DSM 13275] Length = 412 Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 2/85 (2%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280 I I G N GKSSL NA+ +++++V+D GTT D + ++L G V DTAG + Sbjct: 15 IGIYGRRNNGKSSLINAITGQNISLVSDFAGTTTDPVYKSMELHGIGPVVFIDTAGFDDE 74 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 ++ + ++RT V D+ +++ Sbjct: 75 GELGQMR-VERTLDAVNKTDIAIVV 98 >gi|325068464|ref|ZP_08127137.1| GTP-binding proten HflX [Actinomyces oris K20] Length = 273 Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust. Identities = 43/173 (24%), Positives = 73/173 (42%), Gaps = 20/173 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I G++NAGKSSL N L + + + + T + EG ++DT G Sbjct: 65 VAIAGYTNAGKSSLMNRLTEAGIMVEDALFATLDPTVRRAETSEGRTYTLTDTVGFVRNL 124 Query: 282 DIVEKEGIKRTFLEVENADLIL---------LLKEINSKKEI--SFPKNIDF--IFIGTK 328 E + T EV ADL+L L ++ + + + P +D + + K Sbjct: 125 PHELIEAFRSTLEEVAGADLVLHVVDAAHPDPLSQVAAVRTVLSEIPGALDVPELIVLNK 184 Query: 329 SDLYSTYTEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374 +DL T +S+ TGEG+EEL +I+ +L + + +P Sbjct: 185 TDLADAVTLAALRTGLPGAVAVSARTGEGIEELRARIEQMLPHPQVSIDVVVP 237 >gi|254451323|ref|ZP_05064760.1| GTP-binding proten HflX [Octadecabacter antarcticus 238] gi|198265729|gb|EDY89999.1| GTP-binding proten HflX [Octadecabacter antarcticus 238] Length = 449 Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust. Identities = 51/179 (28%), Positives = 80/179 (44%), Gaps = 26/179 (14%) Query: 220 YKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGI 277 Y IV L G++NAGKS+LFN L+ DV D+ T D ++L G V +SDT G Sbjct: 202 YPIVALVGYTNAGKSTLFNRLSGADV-FAHDMLFATLDPTMRKVELPNGDEVIMSDTVGF 260 Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEI-------------NSKKEISFPKNIDFIF 324 + T EV AD+IL +++I ++ +++ ++ I Sbjct: 261 ISDLPTQLVASFRATLEEVLEADIILHVRDISHPQSAEQKKAVLDTLRQLDVNPDVPMIE 320 Query: 325 IGTKSDLYSTYTEEY--------DHL--ISSFTGEGLEELINKIKSILSNKFKKLPFSI 373 + K DL Y D + IS+ TGEGL+ L+N + L + + L + Sbjct: 321 VLNKIDLLEPEDAGYLQALHKDNDKVFGISAVTGEGLDRLLNDVTDHLIVQTRTLTLDL 379 >gi|153815591|ref|ZP_01968259.1| hypothetical protein RUMTOR_01827 [Ruminococcus torques ATCC 27756] gi|145847022|gb|EDK23940.1| hypothetical protein RUMTOR_01827 [Ruminococcus torques ATCC 27756] Length = 298 Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust. Identities = 44/181 (24%), Positives = 77/181 (42%), Gaps = 29/181 (16%) Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 + E ++G+ + ++G N GKS+L N L + +AI ++ P TTR+ + L E + Sbjct: 1 MREDFKSGF-VTLIGRPNVGKSTLMNHLIGQKIAITSNKPQTTRNRIQTVLTTEEGQIVF 59 Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE------------INSKKEISFP-- 317 DT GI + + + + + + D++L L E I K++ P Sbjct: 60 VDTPGIHKAKNKLGEYMVNIAERSLNEVDVVLWLVEPSAFIGAGDRHIIEQLKKVKTPVI 119 Query: 318 ---KNIDFIFIGTKSDLYSTYTEEYDHL----ISSFTGEGLEELINKIKSILSNKFKKLP 370 ID + Y +EYD +S+ +G+ +ELI I K LP Sbjct: 120 LVINKIDMVKKEEILTFIDAYRKEYDFAEIVPVSARSGDNTDELIKVI-------LKYLP 172 Query: 371 F 371 + Sbjct: 173 Y 173 >gi|126737691|ref|ZP_01753421.1| GTP-binding protein HflX [Roseobacter sp. SK209-2-6] gi|126721084|gb|EBA17788.1| GTP-binding protein HflX [Roseobacter sp. SK209-2-6] Length = 423 Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust. Identities = 50/180 (27%), Positives = 77/180 (42%), Gaps = 26/180 (14%) Query: 220 YKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGI 277 Y IV L G++NAGKS+LFN L +V + D+ T D ++L +G + +SDT G Sbjct: 202 YPIVALVGYTNAGKSTLFNRLTGAEV-MAKDMLFATLDPTMRRVELPDGPEIILSDTVGF 260 Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEI----------------------NSKKEIS 315 + T EV AD+IL +++I +S+ +I Sbjct: 261 ISDLPTELVAAFRATLEEVLAADVILHVRDISHDETAKQAEDVASILESLGVDDSRAQIE 320 Query: 316 FPKNIDFIFIGTKSDLYSTYTEEYD-HLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374 +D + E D H IS+ TGEGL L+ I + L + F++P Sbjct: 321 IWNKLDQLSEEEAIARRERAEREEDVHAISALTGEGLPGLLQDIATKLQGVLFEEQFTLP 380 >gi|291542200|emb|CBL15310.1| GTP-binding protein Era [Ruminococcus bromii L2-63] Length = 305 Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 43/86 (50%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKSS+ N L + +AIV+ P TTR+ +T L Y + DT G+ + Sbjct: 13 IAIVGRPNVGKSSILNRLMGQKIAIVSSKPQTTRNRITGVLTQGEYQLVFFDTPGMHKPK 72 Query: 282 DIVEKEGIKRTFLEVENADLILLLKE 307 + K ++ V D +L+ E Sbjct: 73 TSLGKYMVRSVNESVGGVDCCMLVVE 98 >gi|288818281|ref|YP_003432629.1| GTP-binding protein [Hydrogenobacter thermophilus TK-6] gi|288787681|dbj|BAI69428.1| GTP-binding protein [Hydrogenobacter thermophilus TK-6] gi|308751878|gb|ADO45361.1| GTP-binding protein Era [Hydrogenobacter thermophilus TK-6] Length = 302 Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust. Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 2/88 (2%) Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTIDLDLEGYLVKISDTAGI 277 GY + I+G N GKS+L N + V+IV+ PGTTR +L + + + DT GI Sbjct: 4 GY-VAIVGKPNVGKSTLLNQIIGTKVSIVSPKPGTTRIRILGVKNIPDEAQIVFLDTPGI 62 Query: 278 RETDDIVEKEGIKRTFLEVENADLILLL 305 D + + ++ +++AD+IL + Sbjct: 63 YRPKDALGEAMVQVASASLQDADIILFM 90 >gi|269862373|ref|XP_002650812.1| GTPase, predicted [Enterocytozoon bieneusi H348] gi|269863467|ref|XP_002651233.1| GTPase, predicted [Enterocytozoon bieneusi H348] gi|220064905|gb|EED42823.1| GTPase, predicted [Enterocytozoon bieneusi H348] gi|220065579|gb|EED43245.1| GTPase, predicted [Enterocytozoon bieneusi H348] Length = 270 Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 65/135 (48%), Gaps = 8/135 (5%) Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV 284 +G+ N GKSSL N L K V V IPG T+ I L + YL+ D+ G+ +++ Sbjct: 121 VGYPNIGKSSLINILKNKQVCKVAPIPGETKVWQYITLMKDVYLI---DSPGVVPINNL- 176 Query: 285 EKEGIKRTFLEVEN-ADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLI 343 KE + + VEN AD + EI ++ + K + I D + + ++Y L Sbjct: 177 -KEAVLHGAVRVENLADPDFYVAEIFNRAGFNEIKKLYCINFENIDDFFIEFAKKYKKLH 235 Query: 344 SSFTGEGLEELINKI 358 + G+ LI+KI Sbjct: 236 AG--GQPNINLISKI 248 >gi|213402317|ref|XP_002171931.1| mitochondrial GTPase [Schizosaccharomyces japonicus yFS275] gi|211999978|gb|EEB05638.1| mitochondrial GTPase [Schizosaccharomyces japonicus yFS275] Length = 328 Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 5/62 (8%) Query: 221 KIVILGHSNAGKSSLFNALA-----KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 K+ ++G N GKSS+ NAL ++ VA+V PG TR+V + EG V + DT Sbjct: 135 KVFVVGMPNVGKSSVMNALRHASLHRRKVAVVGSHPGVTRNVGEVVRLFEGKNVYMVDTP 194 Query: 276 GI 277 GI Sbjct: 195 GI 196 >gi|306818072|ref|ZP_07451803.1| GTP-binding protein Era [Mobiluncus mulieris ATCC 35239] gi|304649036|gb|EFM46330.1| GTP-binding protein Era [Mobiluncus mulieris ATCC 35239] Length = 303 Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust. Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 3/102 (2%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273 E R G+ + +LG N GKS+L N + + +AI + P TTR V + G+ + + D Sbjct: 12 EDFRAGF-VAVLGRPNVGKSTLINEMVGRKIAITSARPETTRHVARGIVHRPGFQLVLVD 70 Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 T GI ++ + R +E AD+ LL+ + + +EI Sbjct: 71 TPGIHRPRTLLGQRLNDR--VEEAQADVDLLVFCVPADQEIG 110 >gi|160902807|ref|YP_001568388.1| small GTP-binding protein [Petrotoga mobilis SJ95] gi|189037183|sp|A9BHV0|ENGB_PETMO RecName: Full=Probable GTP-binding protein EngB gi|160360451|gb|ABX32065.1| small GTP-binding protein [Petrotoga mobilis SJ95] Length = 196 Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust. Identities = 51/172 (29%), Positives = 77/172 (44%), Gaps = 32/172 (18%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDV---LTID----LDLEGY-LVKISD 273 I G SN GKSS NA+ +A V+ PG TR + L D +DL GY +S Sbjct: 26 IAFAGRSNVGKSSFLNAILGIKIAKVSSTPGKTRSINYYLVNDKYYFVDLPGYGFASVSK 85 Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE---ISFPKNI--DFIFIGTK 328 +E +++ E K F + L++ + + K + + + K++ F+FI TK Sbjct: 86 QE--KERWNVLMNEYFKTRF-SLSAVSLLIDHRHMPQKLDYAMVEWLKDLGTPFLFILTK 142 Query: 329 SDL----------------YSTYTEEYDHLISSFTGEGLEELINKIKSILSN 364 SD +STY E SS T EGL+E++ I IL + Sbjct: 143 SDKLTKSEKAKLFEDIKRSFSTYGEYIYMPFSSKTKEGLKEVLKTIGEILGD 194 >gi|323497165|ref|ZP_08102185.1| GTPase YlqF [Vibrio sinaloensis DSM 21326] gi|323317740|gb|EGA70731.1| GTPase YlqF [Vibrio sinaloensis DSM 21326] Length = 311 Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 56/104 (53%), Gaps = 13/104 (12%) Query: 178 FSEEEDVQNF----SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233 F +E +V+ S+ + +N IL L ++ H + ++G+ IR +I+G N GKS Sbjct: 75 FEKENNVKAMAITTSNVQEVNKILELCRKLAPH--REEIGKNIRT----MIMGIPNVGKS 128 Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 ++ N LA + VA+ + P TR I+L G + +SDT GI Sbjct: 129 TIINTLAGRSVAVTGNQPAVTRRQQRINLQ-NGIV--LSDTPGI 169 >gi|296129409|ref|YP_003636659.1| GTP-binding proten HflX [Cellulomonas flavigena DSM 20109] gi|296021224|gb|ADG74460.1| GTP-binding proten HflX [Cellulomonas flavigena DSM 20109] Length = 505 Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust. Identities = 52/192 (27%), Positives = 82/192 (42%), Gaps = 31/192 (16%) Query: 209 QGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLD 263 Q K RN + I G++NAGKSSL N L V A+ + T R D Sbjct: 272 QTKRASRRRNAIPSVAIAGYTNAGKSSLLNRLTHAGVLVENALFATLDPTVRRAEAAD-- 329 Query: 264 LEGYLVKISDTAG-IRETDDIVEKEGIKRTFLEVENADLILLL---------KEINSKKE 313 G + ++DT G +R + E + T EV +ADLIL + +I + + Sbjct: 330 --GRVYTLADTVGFVRHLPHQL-VEAFRSTLEEVADADLILHVVDAAHPDPEGQIAAVRH 386 Query: 314 I--SFPKNIDF--IFIGTKSDLYSTYT-------EEYDHLISSFTGEGLEELINKIKSIL 362 + P +D I + K+DL + E + ++S+ TGEG++EL I L Sbjct: 387 VFADIPGAMDVPEIIVLNKADLAAPEAVARLRSREVHSIVVSAHTGEGIDELSALIADQL 446 Query: 363 SNKFKKLPFSIP 374 ++ +P Sbjct: 447 PRPGVQVEVVVP 458 >gi|187251519|ref|YP_001876001.1| GTP-binding protein [Elusimicrobium minutum Pei191] gi|186971679|gb|ACC98664.1| GTP-binding conserved hypothetical protein [Elusimicrobium minutum Pei191] Length = 415 Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust. Identities = 48/181 (26%), Positives = 78/181 (43%), Gaps = 22/181 (12%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRE 279 ++ I+G++NAGKS+L N L ++ D T D T + + G + +DT G + Sbjct: 197 QVAIVGYTNAGKSTLLNTLTQETAVYADDKLFATLDPTTRRVKMPGGGQILFTDTVGFIQ 256 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSK-------------KEISFPKNIDFIFIG 326 + T EV AD+IL +K+ +SK K++ +NI + Sbjct: 257 KLPHNLVSAFRATLEEVSEADVILHVKDASSKDISEQSRTVFKIIKDLG-AQNIPMAEVF 315 Query: 327 TKSDLYSTY-------TEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRH 379 K DL Y IS+ +G++EL+ KI+ L K+ IP K + Sbjct: 316 NKCDLLPHYPLAALKNANPGAVFISAKENKGIKELLKKIEETLLFKWHLKTIRIPVSKAY 375 Query: 380 L 380 L Sbjct: 376 L 376 >gi|91774320|ref|YP_567012.1| small GTP-binding protein [Methanococcoides burtonii DSM 6242] gi|91713335|gb|ABE53262.1| GTP-binding domain protein [Methanococcoides burtonii DSM 6242] Length = 413 Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust. Identities = 49/196 (25%), Positives = 94/196 (47%), Gaps = 28/196 (14%) Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRN--GYKIVIL-GHSNAGKSSLFNALAKKDVAI 246 ++V I+ ++N+I + G+ R+ G+ +V L G++NAGKS+LF +L K+ V Sbjct: 158 QDVKKRIVRIRNEIHNSCKGGESLRSFRHERGFSLVALAGYTNAGKSTLFQSLVKEGVE- 216 Query: 247 VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLK 306 V D+ TT T L ++ V ++DT G E + + T E+ AD+ILL+ Sbjct: 217 VEDMLFTTLSPTTRSLSIKQRRVLLTDTVGFIEDLPHWMVDAFRSTLDEIFLADVILLVV 276 Query: 307 EINSKKEISFPKNI-------------DFIFIGTKSDLYS-----------TYTEEYDHL 342 +++ ++ K + + + + K+D+ +Y + L Sbjct: 277 DMSDPLDVIRQKLVVSHDIFWKRTEGAEIVAVLNKADMVDPDDLERKVDAISYLAPHLVL 336 Query: 343 ISSFTGEGLEELINKI 358 +S+ +G+G E L++ I Sbjct: 337 VSASSGDGFEVLLDTI 352 >gi|15924587|ref|NP_372121.1| GTP-binding protein YqeH [Staphylococcus aureus subsp. aureus Mu50] gi|15927177|ref|NP_374710.1| GTP-binding protein YqeH [Staphylococcus aureus subsp. aureus N315] gi|148268080|ref|YP_001247023.1| GTP-binding protein YqeH [Staphylococcus aureus subsp. aureus JH9] gi|150394149|ref|YP_001316824.1| GTP-binding protein YqeH [Staphylococcus aureus subsp. aureus JH1] gi|156979915|ref|YP_001442174.1| GTP-binding protein YqeH [Staphylococcus aureus subsp. aureus Mu3] gi|253315366|ref|ZP_04838579.1| GTP-binding protein YqeH [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255006382|ref|ZP_05144983.2| GTP-binding protein YqeH [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257793673|ref|ZP_05642652.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus A9781] gi|258411028|ref|ZP_05681308.1| nitric oxide synthase [Staphylococcus aureus A9763] gi|258420169|ref|ZP_05683124.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus A9719] gi|258437428|ref|ZP_05689412.1| nitric-oxide synthase [Staphylococcus aureus A9299] gi|258443634|ref|ZP_05691973.1| GTP-binding protein YqeH [Staphylococcus aureus A8115] gi|258446842|ref|ZP_05694996.1| nitric-oxide synthase [Staphylococcus aureus A6300] gi|258448756|ref|ZP_05696868.1| nitric-oxide synthase [Staphylococcus aureus A6224] gi|258453573|ref|ZP_05701551.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus A5937] gi|269203224|ref|YP_003282493.1| GTP-binding protein YqeH [Staphylococcus aureus subsp. aureus ED98] gi|282893098|ref|ZP_06301332.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus A8117] gi|282928230|ref|ZP_06335835.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus A10102] gi|295406720|ref|ZP_06816525.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus A8819] gi|296276599|ref|ZP_06859106.1| GTP-binding protein YqeH [Staphylococcus aureus subsp. aureus MR1] gi|297245698|ref|ZP_06929563.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus A8796] gi|13701395|dbj|BAB42689.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus N315] gi|14247368|dbj|BAB57759.1| similar to GTPase family protein [Staphylococcus aureus subsp. aureus Mu50] gi|147741149|gb|ABQ49447.1| Nitric-oxide synthase [Staphylococcus aureus subsp. aureus JH9] gi|149946601|gb|ABR52537.1| Nitric-oxide synthase [Staphylococcus aureus subsp. aureus JH1] gi|156722050|dbj|BAF78467.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|257787645|gb|EEV25985.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus A9781] gi|257840178|gb|EEV64642.1| nitric oxide synthase [Staphylococcus aureus A9763] gi|257843880|gb|EEV68274.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus A9719] gi|257848633|gb|EEV72621.1| nitric-oxide synthase [Staphylococcus aureus A9299] gi|257851040|gb|EEV74983.1| GTP-binding protein YqeH [Staphylococcus aureus A8115] gi|257854417|gb|EEV77366.1| nitric-oxide synthase [Staphylococcus aureus A6300] gi|257858034|gb|EEV80923.1| nitric-oxide synthase [Staphylococcus aureus A6224] gi|257864304|gb|EEV87054.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus A5937] gi|262075514|gb|ACY11487.1| GTP-binding protein YqeH [Staphylococcus aureus subsp. aureus ED98] gi|282590037|gb|EFB95119.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus A10102] gi|282764416|gb|EFC04542.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus A8117] gi|285817279|gb|ADC37766.1| GTP-binding protein YqeH, possibly involved in replication initiation [Staphylococcus aureus 04-02981] gi|294968467|gb|EFG44491.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus A8819] gi|297177349|gb|EFH36601.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus A8796] gi|312829984|emb|CBX34826.1| GTPase of unknown function family protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|329727168|gb|EGG63624.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp. aureus 21172] Length = 366 Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust. Identities = 42/153 (27%), Positives = 68/153 (44%), Gaps = 25/153 (16%) Query: 216 IRNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270 IR + I+G +N GKS+L N L +KDV + PGTT D++ I LD ++ Sbjct: 157 IRENEDVYIVGTTNVGKSTLINKLIEASVGEKDVVTTSRFPGTTLDMIDIPLDESSFMY- 215 Query: 271 ISDTAGI------------RETDDIVEKEGIKRTFLEVENADLILL--LKEINSKKEISF 316 DT GI +E I+ K+ IK+ ++ A + L I+ +S Sbjct: 216 --DTPGIIQDHQMTHLVSEKELKIIMPKKEIKQRVYQLNEAQTLFFGGLARIDY---VSG 270 Query: 317 PKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGE 349 K F +++ T TE+ + L + G+ Sbjct: 271 GKRPLVCFFSNDLNIHRTKTEKANDLWRNQLGD 303 >gi|315185423|gb|EFU19195.1| GTP-binding protein Era [Spirochaeta thermophila DSM 6578] Length = 290 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 70/153 (45%), Gaps = 24/153 (15%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT----------IDLDLEGY------ 267 I+G ++GKS+L N L + VAI + +P TTR+ + + +D GY Sbjct: 8 IVGRPSSGKSTLLNTLCGRKVAITSPVPQTTRNRIRGIVTEERGQIVFIDTPGYHHSEKK 67 Query: 268 ---LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI- 323 +K ++E D+I+ R+ E E +LI L+K+ I+ K ID Sbjct: 68 FNLFLKEQVIEALKEVDEILYLVDSTRSVGE-EEHELIELVKQAGKPVVIALNK-IDIPE 125 Query: 324 --FIGTKSDLYSTYTEEYDHLISSFTGEGLEEL 354 G L + + IS++TGEGLEEL Sbjct: 126 HHAEGMVPLLKAHFPSAPIVKISAYTGEGLEEL 158 >gi|313140093|ref|ZP_07802286.1| GTP-binding protein Era [Bifidobacterium bifidum NCIMB 41171] gi|313132603|gb|EFR50220.1| GTP-binding protein Era [Bifidobacterium bifidum NCIMB 41171] Length = 344 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 1/61 (1%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R+G+ I ++G N GKS+L NAL K VAI + P TTR + L + + + DT G Sbjct: 35 RSGF-IAVVGRPNVGKSTLINALIGKQVAIASSRPETTRKAIRGILTTDHAQLVLVDTPG 93 Query: 277 I 277 I Sbjct: 94 I 94 >gi|302866049|ref|YP_003834686.1| GTP-binding proten HflX [Micromonospora aurantiaca ATCC 27029] gi|302568908|gb|ADL45110.1| GTP-binding proten HflX [Micromonospora aurantiaca ATCC 27029] Length = 487 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 39/104 (37%), Positives = 50/104 (48%), Gaps = 13/104 (12%) Query: 207 ISQGKLGEIIRNGYKIV-ILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTID 261 + Q K RN V I G++NAGKSSL N L V A+ + TTR T D Sbjct: 241 VRQTKRARRTRNAVPAVAIAGYTNAGKSSLLNRLTGAGVLVENALFATLDPTTRRATTSD 300 Query: 262 LDLEGYLVKISDTAG-IRE-TDDIVEKEGIKRTFLEVENADLIL 303 G L +SDT G +R IV E + T EV +ADL++ Sbjct: 301 ----GRLYTLSDTVGFVRHLPHQIV--EAFRSTLEEVADADLVV 338 >gi|253732250|ref|ZP_04866415.1| GTP-binding protein [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253733152|ref|ZP_04867317.1| GTP-binding protein [Staphylococcus aureus subsp. aureus TCH130] gi|253724039|gb|EES92768.1| GTP-binding protein [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253728908|gb|EES97637.1| GTP-binding protein [Staphylococcus aureus subsp. aureus TCH130] Length = 366 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 8/67 (11%) Query: 216 IRNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270 IR + I+G +N GKS+L N L +KDV + PGTT D++ I LD ++ Sbjct: 157 IRENEDVYIVGTTNVGKSTLINKLIEASVGEKDVVTTSRFPGTTLDMIDIPLDESSFMY- 215 Query: 271 ISDTAGI 277 DT GI Sbjct: 216 --DTPGI 220 >gi|254526472|ref|ZP_05138524.1| tRNA modification GTPase TrmE [Prochlorococcus marinus str. MIT 9202] gi|221537896|gb|EEE40349.1| tRNA modification GTPase TrmE [Prochlorococcus marinus str. MIT 9202] Length = 121 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 1/66 (1%) Query: 376 HKRHLYHLSQTVRYL-EMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFS 434 ++RHL +LS + L + + E D+++ LR +L KITG E+LLD IFS Sbjct: 56 NERHLANLSACLSNLNDTDEIIENKLPFDLLSIELRDGIQNLSKITGQELTEELLDNIFS 115 Query: 435 KFCIGK 440 KFCIGK Sbjct: 116 KFCIGK 121 >gi|167756987|ref|ZP_02429114.1| hypothetical protein CLORAM_02536 [Clostridium ramosum DSM 1402] gi|237732927|ref|ZP_04563408.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|167703162|gb|EDS17741.1| hypothetical protein CLORAM_02536 [Clostridium ramosum DSM 1402] gi|229383996|gb|EEO34087.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 365 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 9/67 (13%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKK------DVAIVTDIPGTTRDVLTIDLDLEGYLVK 270 R+G + I+G +N GKSSL N+L K ++ ++ PGTT D++ I LD + YL Sbjct: 158 RHGRDVYIVGVTNVGKSSLINSLLKHYAGVTDNLITTSEFPGTTLDLIEIPLDDKNYLY- 216 Query: 271 ISDTAGI 277 D+ GI Sbjct: 217 --DSPGI 221 >gi|156103153|ref|XP_001617269.1| GTP-binding protein [Plasmodium vivax SaI-1] gi|148806143|gb|EDL47542.1| GTP-binding protein, putative [Plasmodium vivax] Length = 864 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 30/94 (31%), Positives = 54/94 (57%), Gaps = 3/94 (3%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKK--DVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 +IIR+ I I+G N GKS++FN L +K + +IV +TRD + ++D +GY ++ Sbjct: 279 KIIRSLPLISIIGRPNVGKSTIFNRLTRKFQEGSIVLG-ESSTRDKIYGEVDWDGYKFEV 337 Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 DT G+ D+ K+ + L + + ++LL+ Sbjct: 338 VDTGGLLFEDEKFCKQIRDQIMLALNESSVVLLV 371 >gi|83942367|ref|ZP_00954828.1| GTP-binding protein HflX [Sulfitobacter sp. EE-36] gi|83846460|gb|EAP84336.1| GTP-binding protein HflX [Sulfitobacter sp. EE-36] Length = 412 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 51/192 (26%), Positives = 81/192 (42%), Gaps = 27/192 (14%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280 + ++G++NAGKS+LFN + DV + D+ T D L L +G + +SDT G Sbjct: 194 VALVGYTNAGKSTLFNRMTGADV-MAKDMLFATLDPTMRSLVLPDGPEIILSDTVGFISD 252 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF--IGTKSDLYS-TYTE 337 + T EV AD+I +++I+ + S +N+ I +G D S Sbjct: 253 LPTELVAAFRATLEEVLAADIICHVRDISHAETESQARNVRDILTSLGVPKDTRSFEVWN 312 Query: 338 EYDHL--------------------ISSFTGEGLEELINKIKSILSNKFK--KLPFSIPS 375 + D L IS+ TGEGL+EL I L + +L + Sbjct: 313 KLDQLDDDRAAAVRARAQRDDSVLAISAITGEGLDELQAVIAEALQGAVREAELTLAFAD 372 Query: 376 HKRHLYHLSQTV 387 K+ + Q V Sbjct: 373 GKKRAWLFEQDV 384 >gi|300864576|ref|ZP_07109435.1| GTP-binding protein Era [Oscillatoria sp. PCC 6506] gi|300337400|emb|CBN54583.1| GTP-binding protein Era [Oscillatoria sp. PCC 6506] Length = 350 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 43/174 (24%), Positives = 75/174 (43%), Gaps = 27/174 (15%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 I+G N GKS+L N L + +AI + + TTR+ L L E + DT GI + Sbjct: 62 IIGRPNVGKSTLMNQLVGQKIAITSPVAQTTRNRLRGILTTEEAQIIFVDTPGIHKPHHQ 121 Query: 284 VEKEGIKRTFLEVENADLILLLKE----------------INSKKEISFPKN-IDFIFIG 326 + K + L + + D++L + + +N++ + N D Sbjct: 122 LGKVLVHNAQLAIHSVDVLLFVVDASVPAGGGDRYIVDLLVNTQTPVILGLNKSDQQPSE 181 Query: 327 TKSDLYSTYTEEYDH------LISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374 +++ L +TYT+ + S+ TGEG+E L + IL + P+ P Sbjct: 182 SQAQLDNTYTQLIEAKQWPIVKFSALTGEGVEAL----QQILIEHLEPGPYYYP 231 >gi|291531610|emb|CBK97195.1| GTP-binding protein HflX [Eubacterium siraeum 70/3] Length = 419 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 51/174 (29%), Positives = 78/174 (44%), Gaps = 20/174 (11%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGI--RET 280 I+G++NAGKS+L NAL V + D T D+ + ++L +G + DT G+ R Sbjct: 210 IVGYTNAGKSTLLNALTGAGV-LAEDKLFATLDLTSRAIELPDGRSFTLVDTVGLIRRLP 268 Query: 281 DDIVEKEGIKRTFLEVENADLILLL-----KEINSKKEISFP-------KNIDFIFIGTK 328 +V E K T E +AD+IL + E K + + I I + K Sbjct: 269 HHLV--EAFKSTLEEAASADIILHVCDASDPEAREKGQTTLSLLSELGCGEIPVITVLNK 326 Query: 329 SDL--YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHL 380 D Y E +IS+ G G +EL+ I L++K ++ IP K L Sbjct: 327 CDKLDYELPPAENTVMISAKNGTGFDELLKAISDNLTDKVSRMEMLIPYDKSGL 380 >gi|240139575|ref|YP_002964051.1| putative GTPase (HflX) [Methylobacterium extorquens AM1] gi|240009548|gb|ACS40774.1| putative GTPase (HflX) [Methylobacterium extorquens AM1] Length = 471 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 50/195 (25%), Positives = 84/195 (43%), Gaps = 45/195 (23%) Query: 217 RNGYKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD--------LEGY 267 R Y IV L G++NAGKS+LFNAL K +V +D+L LD G Sbjct: 225 RVPYPIVALVGYTNAGKSTLFNALTKAEV--------RAQDMLFATLDPTARATKLPHGE 276 Query: 268 LVKISDTAG------------IRET-DDIVEKE------GIKRTFLEVENADLILLLKEI 308 V +SDT G R T +D++E + + + + D+ +L+E+ Sbjct: 277 TVILSDTVGFISDLPTSLIAAFRATLEDVIEADILLHVRDVSHGDTQAQADDVEGVLREL 336 Query: 309 ----NSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH-----LISSFTGEGLEELINKIK 359 ++++ I D + G ++ L + L+S+ TGEGL EL +I+ Sbjct: 337 GIEADAERIIEVWNKADLLDEGERTRLLNLSAAHRGAGPAPILVSALTGEGLPELTERIE 396 Query: 360 SILSNKFKKLPFSIP 374 ++ ++P Sbjct: 397 GQVARARSTFAVTLP 411 >gi|227883864|ref|ZP_04001669.1| small GTP-binding domain protein [Escherichia coli 83972] gi|300984874|ref|ZP_07177162.1| small GTP-binding protein [Escherichia coli MS 45-1] gi|227839142|gb|EEJ49608.1| small GTP-binding domain protein [Escherichia coli 83972] gi|300408303|gb|EFJ91841.1| small GTP-binding protein [Escherichia coli MS 45-1] gi|307555789|gb|ADN48564.1| conserved hypothetical protein containing GTP-binding domain [Escherichia coli ABU 83972] gi|315292943|gb|EFU52295.1| small GTP-binding protein [Escherichia coli MS 153-1] Length = 337 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 39/70 (55%) Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270 K+ E I I ++G + AGKSS+ NAL K +V V+D+ TR+V + + + +K Sbjct: 71 KISEAIDYEPVIGVMGKTGAGKSSVCNALFKGEVCAVSDVEACTREVQELHIRFGKHSLK 130 Query: 271 ISDTAGIRET 280 I D G+ E Sbjct: 131 IIDIPGVGEN 140 >gi|321315513|ref|YP_004207800.1| putative GTP-binding protein protease modulator [Bacillus subtilis BSn5] gi|320021787|gb|ADV96773.1| putative GTP-binding protein protease modulator [Bacillus subtilis BSn5] Length = 420 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 33/91 (36%), Positives = 49/91 (53%), Gaps = 3/91 (3%) Query: 217 RNGY-KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDT 274 +NG +I ++G++NAGKS+ FN L D + D+ T D +T + L GY V ++DT Sbjct: 197 KNGVLQIALVGYTNAGKSTWFNRLTSAD-SYEEDLLFATLDPMTRKMVLPSGYSVLLTDT 255 Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLL 305 G + + T EV+ ADLIL L Sbjct: 256 VGFIQDLPTTLIAAFRSTLEEVKEADLILHL 286 >gi|331650408|ref|ZP_08351480.1| putative small GTP-binding protein domain protein [Escherichia coli M605] gi|331040802|gb|EGI12960.1| putative small GTP-binding protein domain protein [Escherichia coli M605] Length = 337 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 39/70 (55%) Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270 K+ E I I ++G + AGKSS+ NAL K +V V+D+ TR+V + + + +K Sbjct: 71 KISEAIDYEPVIGVMGKTGAGKSSVCNALFKGEVCAVSDVEACTREVQKLRIRFGKHSLK 130 Query: 271 ISDTAGIRET 280 I D G+ E Sbjct: 131 IIDIPGVGEN 140 >gi|227500637|ref|ZP_03930686.1| GTP-binding protein, possible GTPase [Anaerococcus tetradius ATCC 35098] gi|227217224|gb|EEI82568.1| GTP-binding protein, possible GTPase [Anaerococcus tetradius ATCC 35098] Length = 382 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 1/59 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRE 279 I I G +N+GKSSL N + D AIV++I GTT D + +++ + V DTAG+ + Sbjct: 11 IGIFGQTNSGKSSLLNYMTGTDTAIVSNIAGTTTDPIRKAMEITDFGPVLFIDTAGVND 69 >gi|315502608|ref|YP_004081495.1| gtp-binding proten hflx [Micromonospora sp. L5] gi|315409227|gb|ADU07344.1| GTP-binding proten HflX [Micromonospora sp. L5] Length = 487 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 39/104 (37%), Positives = 50/104 (48%), Gaps = 13/104 (12%) Query: 207 ISQGKLGEIIRNGYKIV-ILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTID 261 + Q K RN V I G++NAGKSSL N L V A+ + TTR T D Sbjct: 241 VRQTKRARRTRNAVPAVAIAGYTNAGKSSLLNRLTGAGVLVENALFATLDPTTRRATTSD 300 Query: 262 LDLEGYLVKISDTAG-IRE-TDDIVEKEGIKRTFLEVENADLIL 303 G L +SDT G +R IV E + T EV +ADL++ Sbjct: 301 ----GRLYTLSDTVGFVRHLPHQIV--EAFRSTLEEVADADLVV 338 >gi|88855440|ref|ZP_01130104.1| GTP-binding protein [marine actinobacterium PHSC20C1] gi|88815347|gb|EAR25205.1| GTP-binding protein [marine actinobacterium PHSC20C1] Length = 516 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 46/176 (26%), Positives = 78/176 (44%), Gaps = 27/176 (15%) Query: 222 IVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 + I G++NAGKSSL N L + V A+ + T R T D G L +SDT G Sbjct: 297 VAIAGYTNAGKSSLLNRLTRAGVLVENALFATLDATVRRSETAD----GRLFTLSDTVGF 352 Query: 278 RETDDIVEKEGIKRTFLEVENADLILLL---------KEINSKKEIS---FPKNIDFIFI 325 E + T E+ AD+I+ + ++++ +++ ++I I + Sbjct: 353 VRNLPHQLVEAFRSTLEEIGQADVIVHVVDASHPDPGAQLSTVRDVIGELGARDIPEIVV 412 Query: 326 GTKSDLYSTYT-------EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374 KSDL E +S+ +GEG++EL ++I +L K+ +P Sbjct: 413 FNKSDLADDDQRLVIRGLEPTGIFVSARSGEGIDELNSRIAELLPAPEIKVTLLVP 468 >gi|329767815|ref|ZP_08259331.1| ribosome biogenesis GTPase YqeH [Gemella haemolysans M341] gi|328838916|gb|EGF88510.1| ribosome biogenesis GTPase YqeH [Gemella haemolysans M341] Length = 372 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 50/185 (27%), Positives = 79/185 (42%), Gaps = 34/185 (18%) Query: 216 IRNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270 +RNG + I+G +N GKS+ N L K+V + PGTT ++ I LD Sbjct: 161 LRNGKDVYIVGATNVGKSTFINKLIELTTGDKNVITTSHFPGTTLGMIEIPLD---RATS 217 Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI-------NSKKEISFP--KNID 321 I DT GI DI +L+ ++ L++ KEI N+++ + F +D Sbjct: 218 IYDTPGIILDYDIAH-------YLDAQSLKLVMPKKEIKARVFQLNAEQSLFFGGMARMD 270 Query: 322 FI---------FIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372 F+ + +++ T D L G L+ SI +N+ KK F+ Sbjct: 271 FVEGERQSFTLYASNLVEIHRTKLSNADALFEKHLGTLLKPPFEDNISIFNNQVKK-SFT 329 Query: 373 IPSHK 377 I S K Sbjct: 330 IDSRK 334 >gi|225377164|ref|ZP_03754385.1| hypothetical protein ROSEINA2194_02810 [Roseburia inulinivorans DSM 16841] gi|225211069|gb|EEG93423.1| hypothetical protein ROSEINA2194_02810 [Roseburia inulinivorans DSM 16841] Length = 302 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 2/97 (2%) Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVK 270 + E ++G+ + I+G N GKS+L N L + +AI ++ P TTR+ + T+ D+E + Sbjct: 1 MNEKFKSGF-VTIIGRPNVGKSTLMNHLIGQKIAITSNKPQTTRNRIQTVYTDMERGQIV 59 Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307 DT GI + + + + + D+IL L E Sbjct: 60 FLDTPGIHRAKNKLGEYMVNVAEHTLNEVDVILWLVE 96 >gi|254503598|ref|ZP_05115749.1| GTP-binding protein Era [Labrenzia alexandrii DFL-11] gi|222439669|gb|EEE46348.1| GTP-binding protein Era [Labrenzia alexandrii DFL-11] Length = 337 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 47/192 (24%), Positives = 88/192 (45%), Gaps = 32/192 (16%) Query: 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-IDLDLEGYL 268 G + + G+ + ++G NAGKS+L N L V+IVT TTR ++ + + L Sbjct: 37 GAMPSDTKAGF-VALIGAPNAGKSTLINQLVGTKVSIVTHKVQTTRSIVRGVAMHGTAQL 95 Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI-------------- 314 V I DT GI + +++ + + +AD+I LL I+++K I Sbjct: 96 VFI-DTPGIFKPKRRLDRAMVDTAWGGARDADVIALL--IDARKGIDEEVEQILKRLKGQ 152 Query: 315 SFPKNI-----------DFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363 S PK + + + K++ Y + E + ++S+ TG+G +++++ S + Sbjct: 153 SAPKVLILNKTDVANREKLLKLAQKANEYLEFEETF--MVSALTGDGTQQILDYFASKMP 210 Query: 364 NKFKKLPFSIPS 375 + P PS Sbjct: 211 DGPWLYPEDQPS 222 >gi|126172808|ref|YP_001048957.1| GTP-binding protein, HSR1-related [Shewanella baltica OS155] gi|153002272|ref|YP_001367953.1| GTP-binding protein HSR1-like [Shewanella baltica OS185] gi|125996013|gb|ABN60088.1| GTP-binding protein, HSR1-related [Shewanella baltica OS155] gi|151366890|gb|ABS09890.1| GTP-binding protein HSR1-related [Shewanella baltica OS185] Length = 435 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 63/227 (27%), Positives = 98/227 (43%), Gaps = 34/227 (14%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRE- 279 + ++G++NAGKS+LFNAL DV + T L LDL V ++DT G IR Sbjct: 200 VSLVGYTNAGKSTLFNALTSSDVYAADQLFATLDPTLR-KLDLPDGAVILADTVGFIRHL 258 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEI-------NSKKEISFPKNIDF-----IFIGT 327 D+V K T E A+L+L + + N + S K+I+ + + Sbjct: 259 PHDLV--AAFKATLQETRQAELLLHIIDCADENMADNFDQVQSVLKDIEADEVMQLVVCN 316 Query: 328 KSDLYSTYTE--EYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378 K DL T EY+ + +S+ G + L+ I ++ K+L IP+ Sbjct: 317 KIDLLEDVTPRIEYNDIGKPVRVWVSAQKRLGFDLLLKAITELIGEVIKELTLRIPATAG 376 Query: 379 HLYHLSQTVRYLEMASLNEKDCGLDIIAENL------RLASVSLGKI 419 H +L Q R + D G I++ L RLA S G++ Sbjct: 377 H--YLGQFYRLDAIQQKEYDDLGNCILSVRLSDADWRRLAKQSQGEL 421 >gi|306821418|ref|ZP_07455023.1| ribosome biogenesis GTP-binding protein YsxC [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550540|gb|EFM38526.1| ribosome biogenesis GTP-binding protein YsxC [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 195 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 46/168 (27%), Positives = 77/168 (45%), Gaps = 27/168 (16%) Query: 222 IVILGHSNAGKSSLFNA-LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS--DTAGIR 278 I + G SN GKSSL N+ L +K +A V+ PG TR + ++ YLV + A + Sbjct: 26 IALAGRSNVGKSSLINSLLNRKSLARVSGTPGKTRTINFFIINESFYLVDLPGYGYAKLS 85 Query: 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFI--------FIGTKSD 330 +T+ + ++ F + +N + LL +I + + S + D+ I TKSD Sbjct: 86 KTEQESWGKTMELYFSKSKNLKHVFLLLDIRHEPKASDKQMYDYCKYYDIPVDIIATKSD 145 Query: 331 LYS--TYTEEYDHL--------------ISSFTGEGLEELINKIKSIL 362 S Y + + + ISS G+EEL N ++S++ Sbjct: 146 KISRGAYQKSFSIMKKFLQIKEEIKIFPISSLNKSGIEELSNYMESVI 193 >gi|298291622|ref|YP_003693561.1| GTP-binding protein Era [Starkeya novella DSM 506] gi|296928133|gb|ADH88942.1| GTP-binding protein Era [Starkeya novella DSM 506] Length = 304 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 76/160 (47%), Gaps = 24/160 (15%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTA 275 R G+ + ++G NAGKS+L NAL V+IV+ TTR L + LEG + + DT Sbjct: 9 RCGF-VALIGAPNAGKSTLTNALVGTKVSIVSHKVQTTRS-LVRGIALEGTTQIILVDTP 66 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKE------------INSKKEISFPK----- 318 GI +EK ++ + +AD ++LL + I ++ P+ Sbjct: 67 GIFAPKRRLEKAMVRSAWSGAGDADAVVLLVDARAGMTEDVEAIIKGLADVKRPRAILLN 126 Query: 319 NIDFIFIGTKSDLYSTYTE--EYDHL--ISSFTGEGLEEL 354 ID + + +L + E +D L +S+ G+GL+EL Sbjct: 127 KIDLVKRDSLLELAAKVAELISFDRLFMVSAQNGDGLKEL 166 >gi|259090130|pdb|3A1W|A Chain A, Crystal Structue Of The G Domain Of T. Maritima Feob Iron Iransporter Length = 168 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 48/160 (30%), Positives = 67/160 (41%), Gaps = 27/160 (16%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ + G N GK+SLFNAL V + PG T + +GY + + D G Sbjct: 7 KVALAGCPNVGKTSLFNALTGTK-QYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSL 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE-INSKKE-------ISFPKNIDFIF-------- 324 E I R +L +ADL++L+ + +N ++ + K + Sbjct: 66 GYSSIDEKIARDYLLKGDADLVILVADSVNPEQSLYLLLEILEMEKKVILAMTAIDEAKK 125 Query: 325 IGTKSDLYSTYTEEYDHL------ISSFTGEGLEELINKI 358 G K D Y E HL SS TGEGLEEL KI Sbjct: 126 TGMKIDRY----ELQKHLGIPVVFTSSVTGEGLEELKEKI 161 >gi|224282934|ref|ZP_03646256.1| GTP-binding protein Era [Bifidobacterium bifidum NCIMB 41171] Length = 336 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 1/61 (1%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R+G+ I ++G N GKS+L NAL K VAI + P TTR + L + + + DT G Sbjct: 27 RSGF-IAVVGRPNVGKSTLINALIGKQVAIASSRPETTRKAIRGILTTDHAQLVLVDTPG 85 Query: 277 I 277 I Sbjct: 86 I 86 >gi|83952201|ref|ZP_00960933.1| GTP-binding protein HflX [Roseovarius nubinhibens ISM] gi|83837207|gb|EAP76504.1| GTP-binding protein HflX [Roseovarius nubinhibens ISM] Length = 425 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 42/168 (25%), Positives = 77/168 (45%), Gaps = 26/168 (15%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD--VLTIDLDLEGYLVKISDTAGIRE 279 + ++G++NAGKS+LFN L DV + D+ T D + + L G V +SDT G Sbjct: 206 VALVGYTNAGKSTLFNRLTGSDV-MAKDMLFATLDPTMRKVSLPHGGPDVILSDTVGFIS 264 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF-------------IG 326 + T EV +ADL++ +++I+ + ++++ I + Sbjct: 265 DLPTELVAAFRATLEEVVSADLVVHVRDISHPETEEQARDVEAILESLDVAEGTPRIELW 324 Query: 327 TKSDLY-----STYTEEYDH-----LISSFTGEGLEELINKIKSILSN 364 K+DL T+ + L+S+ +GEG+E +++ LS Sbjct: 325 NKADLLDPEARETFANQAARREEVILVSAVSGEGMEAFVDQATEALSG 372 >gi|320534682|ref|ZP_08035123.1| GTP-binding protein HflX [Actinomyces sp. oral taxon 171 str. F0337] gi|320133116|gb|EFW25623.1| GTP-binding protein HflX [Actinomyces sp. oral taxon 171 str. F0337] Length = 532 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 46/177 (25%), Positives = 75/177 (42%), Gaps = 28/177 (15%) Query: 222 IVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 + I G++NAGKSSL N L + + A+ + T R T EG ++DT G Sbjct: 310 VAIAGYTNAGKSSLMNRLTEAGIMVEDALFATLDPTVRRAETS----EGRTYTLTDTVGF 365 Query: 278 RETDDIVEKEGIKRTFLEVENADLIL---------LLKEINSKKEI--SFPKNIDF--IF 324 E + T EV ADL+L L ++ + + + P +D + Sbjct: 366 VRNLPHELIEAFRSTLEEVAGADLVLHVVDAAHPDPLSQVAAVRTVLSEIPGALDVPELI 425 Query: 325 IGTKSDLYSTYTEEYDHL-------ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374 + K+DL T +S+ TGEG+EEL +I+ +L + + +P Sbjct: 426 VLNKTDLADAVTLAALRTGLPGAVAVSARTGEGIEELRARIEQMLPHPQVSIDVVVP 482 >gi|308274309|emb|CBX30908.1| Probable GTP-binding protein engB [uncultured Desulfobacterium sp.] Length = 202 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 45/139 (32%), Positives = 67/139 (48%), Gaps = 19/139 (13%) Query: 222 IVILGHSNAGKSSLFNA-LAKKDVAIVTDIPGTTR--------DVLTIDLDLEGY-LVKI 271 I G SN GKSSL N L +K++ + PG T+ D L +D+ GY K+ Sbjct: 26 IAFAGRSNVGKSSLINTLLNRKNLVKTSSTPGRTQLINFFLINDTLGF-VDIPGYGYAKV 84 Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK-----NIDFIFIG 326 A +R+T + + I +T ++ LIL L+ I +EI+F NI FI + Sbjct: 85 P--AAVRKTWGTMIETYI-QTRKTLKGVVLILDLRRIPGPEEITFMDWLNYYNIPFILVL 141 Query: 327 TKSDLYSTYTEEYDHLISS 345 TK+D S + H+I S Sbjct: 142 TKADKLSKTNQVKQHMIIS 160 >gi|307332545|ref|ZP_07611598.1| GTP-binding protein YchF [Streptomyces violaceusniger Tu 4113] gi|306881801|gb|EFN12934.1| GTP-binding protein YchF [Streptomyces violaceusniger Tu 4113] Length = 409 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 22/42 (52%), Positives = 26/42 (61%) Query: 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 +SSH GKL E+ I I+G N GKS+LFNAL K DV Sbjct: 33 LSSHPDHGKLREVANVSLTIGIVGLPNVGKSTLFNALTKNDV 74 >gi|308233432|ref|ZP_07664169.1| GTP-binding protein HflX [Atopobium vaginae DSM 15829] gi|328944039|ref|ZP_08241504.1| GTP-binding protein [Atopobium vaginae DSM 15829] gi|327492008|gb|EGF23782.1| GTP-binding protein [Atopobium vaginae DSM 15829] Length = 461 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 60/122 (49%), Gaps = 11/122 (9%) Query: 196 ILFLKNDISSHISQGKLGEIIRNG---YKIVILGHSNAGKSSLFNALAKKDVAI----VT 248 I +K +++ Q K+ IR+ YKI ++G++NAGKS+L N ++ + Sbjct: 185 IAHVKQQLAALEIQRKVQRSIRSSSPLYKIALVGYTNAGKSTLLNRISHSSTYVKDELFA 244 Query: 249 DIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI 308 + TTR + D +SDT G + + K T L+V +ADL+L + ++ Sbjct: 245 TLDSTTRSITLPDTR----RAVLSDTVGFIQKLPTELIDAFKSTLLDVVSADLLLCVVDV 300 Query: 309 NS 310 +S Sbjct: 301 SS 302 >gi|27905016|ref|NP_778142.1| putative GTP-binding protein [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|46395803|sp|Q89A14|DER_BUCBP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|27904414|gb|AAO27247.1| putative GTP-binding protein [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 462 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 31/79 (39%), Positives = 40/79 (50%), Gaps = 9/79 (11%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD---VLTIDLDLEGYLVKISDTAGI 277 KI I+G N GKS+L N L + IV PGTTRD L I + DTAGI Sbjct: 202 KIAIIGKPNVGKSTLINVLLNEKRVIVDSNPGTTRDSNWSLIIRNKINYMFF---DTAGI 258 Query: 278 RETDDI---VEKEGIKRTF 293 R+ + I +EK + +T Sbjct: 259 RKKNKISTYIEKISVHKTL 277 >gi|331269214|ref|YP_004395706.1| HSR1-like GTP-binding protein [Clostridium botulinum BKT015925] gi|329125764|gb|AEB75709.1| GTP-binding protein, HSR1-related protein [Clostridium botulinum BKT015925] Length = 613 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 59/203 (29%), Positives = 96/203 (47%), Gaps = 38/203 (18%) Query: 221 KIVILGHSNAGKSSLFNALAK----KDV-----AIVTDIPGTTRDVLTIDLDL-EGYLVK 270 K+ ++G++NAGKS+L N L + KDV D+ T DV T L L + L+ Sbjct: 381 KVSLVGYTNAGKSTLRNKLCEIASPKDVYQKEEVFEADMLFATLDVTTRALILPDNRLIT 440 Query: 271 ISDTAG-IRE-TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF---- 324 ++DT G IR+ D+V E K T EV N++L+L + + +S+ + ++ + Sbjct: 441 LTDTVGFIRKLPHDLV--EAFKSTLEEVINSELLLHVVDASSESACKQIEAVNLVLEELG 498 Query: 325 ------------IGTKSD-LYSTYTEEYDHL----ISSFTGEGLEELINKIKSILSNKFK 367 + T S+ S EEY++L IS + L+ L+ +I +L N + Sbjct: 499 AADKPMILLLNKVDTASNERLSKLKEEYNNLNILEISGKSNINLDLLLEEICKVLPNPLR 558 Query: 368 KLPFSIP---SHKRHLYHLSQTV 387 K+ + IP S L H S V Sbjct: 559 KVEYLIPYSDSASVALLHRSAKV 581 >gi|300113379|ref|YP_003759954.1| GTP-binding protein Era [Nitrosococcus watsonii C-113] gi|299539316|gb|ADJ27633.1| GTP-binding protein Era [Nitrosococcus watsonii C-113] Length = 307 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 2/102 (1%) Query: 207 ISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266 ++Q E IR GY I I+G N GKSSL N + + ++I + P TTR + L G Sbjct: 5 LTQEGTQESIRCGY-IAIIGRPNVGKSSLLNRILDQKISITSRRPQTTRHRILGIKTLPG 63 Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTF-LEVENADLILLLKE 307 DT G ++ + + + R +E DLIL + E Sbjct: 64 IQAIYVDTPGFQDKERRLMNRYLNRAIDSTLEEVDLILFVIE 105 >gi|284162051|ref|YP_003400674.1| GTP-binding protein HSR1-related protein [Archaeoglobus profundus DSM 5631] gi|284012048|gb|ADB58001.1| GTP-binding protein HSR1-related protein [Archaeoglobus profundus DSM 5631] Length = 246 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 34/87 (39%), Positives = 48/87 (55%), Gaps = 5/87 (5%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+V++G+ N GKSSL N LA+ A +PG T+ I + G +V +SDT GI Sbjct: 101 KLVLIGYPNVGKSSLINMLAQYTAASTAPVPGHTKGKQWI--RISGKIV-LSDTPGIIPR 157 Query: 281 DDIVEKEGIKRTF-LEVENADLILLLK 306 + K+ K F +VE + LILL K Sbjct: 158 -EYASKDWAKILFPRDVEESALILLEK 183 >gi|149002055|ref|ZP_01827009.1| GTP-binding protein [Streptococcus pneumoniae SP14-BS69] gi|147759864|gb|EDK66854.1| GTP-binding protein [Streptococcus pneumoniae SP14-BS69] Length = 336 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 48/173 (27%), Positives = 74/173 (42%), Gaps = 45/173 (26%) Query: 151 SGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQG 210 SG++S QW+ K H D+ + ++ + KEV++ I Sbjct: 86 SGKIS----QWLMKRAHEEGLRPVDVVLTSAQN--KHAIKEVIDKI-------------- 125 Query: 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLE 265 E R G + ++G +N GKS+L NA+ + ++V + PGTT D + I LD Sbjct: 126 ---EHYRKGRDVYVVGVTNVGKSTLINAIIQEITGDQNVITTSRFPGTTLDKIEIPLDDG 182 Query: 266 GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK 318 Y I DT GI + +L +N LK ++ KKEI PK Sbjct: 183 SY---IYDTPGIIHRHQMAH-------YLTAKN------LKYVSPKKEIK-PK 218 >gi|326405800|gb|ADZ62871.1| GTP-binding protein [Lactococcus lactis subsp. lactis CV56] Length = 401 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 15/103 (14%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268 E R G + ++G +N GKS+L NA+ K +DV + PGTT + + I LD + L Sbjct: 195 EYYRRGRDVYVVGVTNVGKSTLINAIIKSASGSEDVITTSRFPGTTLNKIEIPLDEDSAL 254 Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311 + DT GI + +LE E+ + KEI K Sbjct: 255 I---DTPGIIHRGQMAH-------YLEPEDLKYVSPRKEIKPK 287 >gi|295398703|ref|ZP_06808725.1| ribosome biogenesis GTPase YqeH [Aerococcus viridans ATCC 11563] gi|294973056|gb|EFG48861.1| ribosome biogenesis GTPase YqeH [Aerococcus viridans ATCC 11563] Length = 375 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 6/68 (8%) Query: 216 IRNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDL-DLEGYLV 269 +R+G + ++G +N GKSSL N + + DV + PGTT D++ I D EG Sbjct: 163 MRDGRDVYVIGMANVGKSSLINRILQATGVEADVITTSQFPGTTLDLIDIPFDDAEGNEA 222 Query: 270 KISDTAGI 277 + DT GI Sbjct: 223 SLIDTPGI 230 >gi|291059918|gb|ADD72653.1| GTP-binding protein Era [Treponema pallidum subsp. pallidum str. Chicago] Length = 321 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 1/93 (1%) Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272 G R+G ++I G ++GKS+ NA+ V+IV+ IP TTR+ + +++E + Sbjct: 7 GASPRSGVSLII-GRPSSGKSTFLNAVCGYKVSIVSPIPQTTRNTVRGIVNIESDQIVFM 65 Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 DT G +D V++AD++L L Sbjct: 66 DTPGYHRSDRKFNLRLQSLVHSNVKDADVLLYL 98 >gi|254504147|ref|ZP_05116298.1| GTP-binding proten HflX [Labrenzia alexandrii DFL-11] gi|222440218|gb|EEE46897.1| GTP-binding proten HflX [Labrenzia alexandrii DFL-11] Length = 431 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 57/242 (23%), Positives = 98/242 (40%), Gaps = 41/242 (16%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280 + ++G++NAGKS+LFN L + +V D+ T D + L G + +SDT G Sbjct: 202 VALVGYTNAGKSTLFNRLTESEV-FAKDLLFATLDPTLRKITLPHGREIILSDTVGFISD 260 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEI-----NSKKE-------------------ISF 316 + T EV ADLIL +++I +++ E I Sbjct: 261 LPTHLVAAFRATLEEVLEADLILHVRDISHADTDAQAEDVQKTLEELGVDALTGAPIIEV 320 Query: 317 PKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376 ID + ++ L S E +S+ TGEG+E L ++ S ++ L +P Sbjct: 321 WNKIDLLDKDYRAKLLSEEQGEGPVALSAVTGEGIEHLSARVDSFMARHDDILSVRVPVA 380 Query: 377 KRHLYHLSQTVRYLEMASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKF 436 + L + +MA + E+ G + + +R++ G +F KF Sbjct: 381 EGALI-----AKLYQMAEVLERSDGEEYVIAEVRVSDKQRGPFRD----------LFGKF 425 Query: 437 CI 438 I Sbjct: 426 AI 427 >gi|206891076|ref|YP_002248190.1| GTP-binding protein Era [Thermodesulfovibrio yellowstonii DSM 11347] gi|206743014|gb|ACI22071.1| GTP-binding protein Era [Thermodesulfovibrio yellowstonii DSM 11347] Length = 289 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 1/92 (1%) Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 ++ GY + ++G N GKS+L N + + V+IVT+ P TTR+ +T +L + DT Sbjct: 1 MKCGY-VALIGRPNVGKSTLINTVIGEKVSIVTEKPQTTRNRITGIKNLPNAQIIFIDTP 59 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKE 307 GI + + + +K ++ DLI+ + E Sbjct: 60 GIHKPRHKLGEFMVKEAQEAMDMVDLIVFMVE 91 >gi|15639530|ref|NP_218980.1| GTP-binding protein Era [Treponema pallidum subsp. pallidum str. Nichols] gi|189025769|ref|YP_001933541.1| GTP-binding protein Era [Treponema pallidum subsp. pallidum SS14] gi|13959351|sp|O83552|ERA_TREPA RecName: Full=GTPase Era gi|226741402|sp|B2S3D3|ERA_TREPS RecName: Full=GTPase Era gi|3322831|gb|AAC65525.1| GTP-binding protein (era) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018344|gb|ACD70962.1| GTP-binding protein [Treponema pallidum subsp. pallidum SS14] Length = 319 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 1/93 (1%) Query: 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272 G R+G ++I G ++GKS+ NA+ V+IV+ IP TTR+ + +++E + Sbjct: 5 GASPRSGVSLII-GRPSSGKSTFLNAVCGYKVSIVSPIPQTTRNTVRGIVNIESDQIVFM 63 Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 DT G +D V++AD++L L Sbjct: 64 DTPGYHRSDRKFNLRLQSLVHSNVKDADVLLYL 96 >gi|269976802|ref|ZP_06183777.1| GTP-binding protein Era [Mobiluncus mulieris 28-1] gi|307700621|ref|ZP_07637649.1| GTP-binding protein Era [Mobiluncus mulieris FB024-16] gi|269934999|gb|EEZ91558.1| GTP-binding protein Era [Mobiluncus mulieris 28-1] gi|307614151|gb|EFN93392.1| GTP-binding protein Era [Mobiluncus mulieris FB024-16] Length = 303 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 3/102 (2%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273 E R G+ + +LG N GKS+L N + + +AI + P TTR V + G+ + + D Sbjct: 12 EDFRAGF-VAVLGRPNVGKSTLINEMVGRKIAITSARPETTRHVARGIVHRPGFQLVLVD 70 Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 T GI ++ + R +E AD+ LL+ + + +EI Sbjct: 71 TPGIHRPRTLLGQRLNDR--VEEAQADVDLLVFCVPADQEIG 110 >gi|320668156|gb|EFX35023.1| hypothetical protein ECOSU61_14471 [Escherichia coli O157:H7 str. LSU-61] Length = 163 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 33/84 (39%), Positives = 45/84 (53%), Gaps = 4/84 (4%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA--GIRETD 281 I+G S AGKSSL NAL + +V V+D+ TR+V L+ G+ + I+D A G D Sbjct: 41 IMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQRFRLNGHGHSMVITDLARGGRGGRD 100 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 E E + R L DL+L L Sbjct: 101 RDAEYEALYRDIL--PELDLVLWL 122 >gi|310287377|ref|YP_003938635.1| GTP-binding protein Era [Bifidobacterium bifidum S17] gi|309251313|gb|ADO53061.1| GTP-binding protein Era [Bifidobacterium bifidum S17] Length = 336 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 1/61 (1%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R+G+ I ++G N GKS+L NAL K VAI + P TTR + L + + + DT G Sbjct: 27 RSGF-IAVVGRPNVGKSTLINALIGKQVAIASSRPETTRKAIRGILTTDHAQLVLVDTPG 85 Query: 277 I 277 I Sbjct: 86 I 86 >gi|268610927|ref|ZP_06144654.1| small GTP-binding protein [Ruminococcus flavefaciens FD-1] Length = 399 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 73/139 (52%), Gaps = 11/139 (7%) Query: 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIV 284 G NAGKSS+ NA+ +++++V+D+ GTT D +T ++L V I DT G + + Sbjct: 18 GRRNAGKSSVVNAVTGQELSVVSDVKGTTTDPVTKAMELLPLGPVVIIDTPGFDDVGTLG 77 Query: 285 EKEGIKRTFLEVENADLILLLKEINS------KKEISF--PKNIDFIFIGTKSDLYSTY- 335 E +++T + DL +L+ + ++ K+ I K+I +I + KSD+ Sbjct: 78 EMR-VRKTKQILNRTDLAVLIVDNSTGLSDTDKQLIGIFKEKDIPYITVYNKSDIAPKAD 136 Query: 336 TEEYDHLISSFTGEGLEEL 354 +E + +S+ E + EL Sbjct: 137 CKEGEISVSAVCRENIHEL 155 >gi|194430709|ref|ZP_03063138.1| ribosome biogenesis GTP-binding protein YsxC [Escherichia coli B171] gi|194411246|gb|EDX27639.1| ribosome biogenesis GTP-binding protein YsxC [Escherichia coli B171] Length = 197 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 222 IVILGHSNAGKSSLFNA-LAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272 I LG SN GKSSL NA L +K VA V+ PG T+ + +D + YLV + Sbjct: 25 IAFLGRSNVGKSSLINAFLNRKKVAKVSSTPGFTKALNFFRIDFKFYLVDLP 76 >gi|188997612|ref|YP_001931863.1| GTP-binding protein Era [Sulfurihydrogenibium sp. YO3AOP1] gi|188932679|gb|ACD67309.1| GTP-binding protein Era [Sulfurihydrogenibium sp. YO3AOP1] Length = 307 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 55/186 (29%), Positives = 84/186 (45%), Gaps = 38/186 (20%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R G+ + I+G N GKS+L N + ++IV+ P TTR + L + DT G Sbjct: 11 RAGF-VAIVGRPNVGKSTLLNNIIGTKLSIVSPRPQTTRMRILGVKHLPDAQIIFLDTPG 69 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL-----------KEI--NSKKEISFP-----K 318 +++ D++ K ++ +E+AD+IL++ KEI N K++ P Sbjct: 70 VQKGGDLLTKSVMEFVISGIESADVILMVIDAETGWTKEDKEIVENYLKKVDKPAILAIN 129 Query: 319 NIDFIFIGTKSDLYSTYTEE----YDH----LISSFTGEGLEELINKIKSILSNKFKKLP 370 ID I K DL EE YD IS+ ++ELI IK K LP Sbjct: 130 KIDKI----KRDLVLPLIEESTKIYDFKEFVPISAIKNLNIDELIETIK-------KYLP 178 Query: 371 FSIPSH 376 S+P + Sbjct: 179 ESLPLY 184 >gi|311064218|ref|YP_003970943.1| GTP-binding protein [Bifidobacterium bifidum PRL2010] gi|310866537|gb|ADP35906.1| Era GTP-binding protein [Bifidobacterium bifidum PRL2010] Length = 336 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 1/61 (1%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R+G+ I ++G N GKS+L NAL K VAI + P TTR + L + + + DT G Sbjct: 27 RSGF-IAVVGRPNVGKSTLINALIGKQVAIASSRPETTRKAIRGILTTDHAQLVLVDTPG 85 Query: 277 I 277 I Sbjct: 86 I 86 >gi|311278012|ref|YP_003940243.1| GTP-binding protein HSR1-related protein [Enterobacter cloacae SCF1] gi|308747207|gb|ADO46959.1| GTP-binding protein HSR1-related protein [Enterobacter cloacae SCF1] Length = 287 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 3/85 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G + GKSSL NAL V+ V+D+ TRD L L + + + I D G+ E+ Sbjct: 39 IGIMGKTGVGKSSLCNALFADKVSPVSDVTACTRDPLCFRLQVGEHAMTIVDLPGVGESG 98 Query: 282 DI-VEKEGIKRTFLEVENADLILLL 305 +E + R ++ DLIL L Sbjct: 99 ARDIEYAALYRK--QLPRLDLILWL 121 >gi|284989127|ref|YP_003407681.1| GTP-binding proten HflX [Geodermatophilus obscurus DSM 43160] gi|284062372|gb|ADB73310.1| GTP-binding proten HflX [Geodermatophilus obscurus DSM 43160] Length = 384 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 68/162 (41%), Gaps = 31/162 (19%) Query: 222 IVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 + + G++NAGKS+L N LA DV A+ + T R T D G ++DT G Sbjct: 224 VALTGYTNAGKSALLNRLAGADVLVQDALFATLDPTVRRTRTPD----GRPYTLTDTVGF 279 Query: 278 RETDDIVEKEGIKRTFLEVENADLIL-------------------LLKEINSK--KEISF 316 + + T EV +ADL+L +L EI ++ E+ Sbjct: 280 VRHLPHQLVDAFRSTLEEVVDADLVLHVVDASAPDAMDQVTAVRGVLHEIGARDHPELLA 339 Query: 317 PKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKI 358 +D G + L + Y + +S+ TGEG EEL I Sbjct: 340 LNKVDVAPEGWLAALRAAYPDAVP--VSALTGEGAEELRRAI 379 >gi|154148623|ref|YP_001406618.1| GTP-binding protein Era [Campylobacter hominis ATCC BAA-381] gi|189037255|sp|A7I277|ERA_CAMHC RecName: Full=GTPase Era gi|153804632|gb|ABS51639.1| GTP-binding protein Era [Campylobacter hominis ATCC BAA-381] Length = 289 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 8/121 (6%) Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVT-DIPGTTRDVLTIDLDLEGYLVKISDT 274 +++G+ + ++G +NAGKSSL N L + +A+V+ I T R + I + E ++ I DT Sbjct: 1 MKSGF-VSLIGRTNAGKSSLLNFLVGERLAMVSHKINATRRKINGIAMFGEDQIIFI-DT 58 Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE-----ISFPKNIDFIFIGTKS 329 G+ +++ I+ K I + +ADL+L L I+ + K I I TK+ Sbjct: 59 PGLHKSEKIMNKLMIDVAIKSIGDADLVLFLASIHDDTRDYEEFLKIAKRPPHILILTKT 118 Query: 330 D 330 D Sbjct: 119 D 119 >gi|124025484|ref|YP_001014600.1| GTPase SAR1 and related small G proteins [Prochlorococcus marinus str. NATL1A] gi|123960552|gb|ABM75335.1| GTPase SAR1 and related small G proteins [Prochlorococcus marinus str. NATL1A] Length = 517 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 34/96 (35%), Positives = 52/96 (54%), Gaps = 3/96 (3%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL--VKI 271 E+ R +V+ G ++GK+SL AL KK V V+ G+TR T L L+G ++I Sbjct: 118 ELDRGDIILVVFGIGSSGKTSLIRALLKKIVGKVSPEMGSTRGKETFRLKLKGLTRGIRI 177 Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307 DT GI E+ +E K +E +DL+L++ E Sbjct: 178 IDTPGILESGR-GGREREKSALMEARKSDLMLVVIE 212 >gi|70951784|ref|XP_745105.1| GTP-binding protein [Plasmodium chabaudi chabaudi] gi|56525322|emb|CAH75281.1| GTP-binding protein, putative [Plasmodium chabaudi chabaudi] Length = 264 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 42/129 (32%), Positives = 58/129 (44%), Gaps = 27/129 (20%) Query: 221 KIVILGHSNAGKSSLFNALAK-KDVAIVTDIPGTTRDVLTIDL-------DLEGY-LVKI 271 +I I G SN GKSSL NAL ++VA + PG TR + +L DL GY K+ Sbjct: 61 QIAIFGRSNVGKSSLINALMNYREVAQASKTPGRTRHLFIYNLLNHISVVDLPGYGFAKV 120 Query: 272 S----DTAGIRETDDIVEKEGIKRTFLEVENA------DLILLLKEINSKKEISFPKNID 321 S D I + + + + +KR +E D +LL ++ KNI Sbjct: 121 SKELRDNWSILIEEYLNKAKNLKRALCLIECTELFTPYDYVLL--------DMFIMKNIP 172 Query: 322 FIFIGTKSD 330 F I TK D Sbjct: 173 FQIIVTKID 181 >gi|294782449|ref|ZP_06747775.1| GTP-binding protein Era [Fusobacterium sp. 1_1_41FAA] gi|294481090|gb|EFG28865.1| GTP-binding protein Era [Fusobacterium sp. 1_1_41FAA] Length = 297 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 45/84 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS+L N + + VAIV+D GTTRD + L+++ DT GI + Sbjct: 6 IAIVGRPNVGKSTLINKMVAEKVAIVSDKAGTTRDNIKGILNVKDNQYIFIDTPGIHKPQ 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + +++ D+IL L Sbjct: 66 HLLGEYMTNIAVNILKDVDIILFL 89 >gi|291563937|emb|CBL42753.1| GTP-binding protein Era [butyrate-producing bacterium SS3/4] Length = 300 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 5/96 (5%) Query: 216 IRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKI 271 ++ GYK + ++G N GKS+L N L + +AI ++ P TTR+ + T+ D G ++ + Sbjct: 1 MKKGYKSGFVTLIGRPNVGKSTLMNHLIGQKIAITSEKPQTTRNRIQTVYTDEHGQIIFL 60 Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307 DT GI + + + + + + D+IL L E Sbjct: 61 -DTPGIHKAKNKLGEYMVNVAEHTLREVDVILWLVE 95 >gi|238027973|ref|YP_002912204.1| YeeP [Burkholderia glumae BGR1] gi|237877167|gb|ACR29500.1| YeeP [Burkholderia glumae BGR1] Length = 286 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 4/66 (6%) Query: 219 GY--KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL--VKISDT 274 GY +I +LG + GKS+LFNAL DVA V+D+ TR + L+++G L V + D Sbjct: 35 GYVPRIGVLGKTGVGKSALFNALFGHDVAEVSDVSACTRQPQQVLLEMQGDLSGVFLVDL 94 Query: 275 AGIRET 280 G+ E+ Sbjct: 95 PGLGES 100 >gi|229817680|ref|ZP_04447962.1| hypothetical protein BIFANG_02951 [Bifidobacterium angulatum DSM 20098] gi|229785469|gb|EEP21583.1| hypothetical protein BIFANG_02951 [Bifidobacterium angulatum DSM 20098] Length = 334 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 2/79 (2%) Query: 200 KNDISSHISQGKLG-EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL 258 ++D++ + KL E R+G+ + ++G N GKS+L NAL +AI + P TTR + Sbjct: 7 RSDMTDTPASAKLASEPYRSGF-VAVVGRPNVGKSTLVNALIGTQIAIASSRPETTRKAI 65 Query: 259 TIDLDLEGYLVKISDTAGI 277 L + + + DT GI Sbjct: 66 RGVLTTDNAQLVLVDTPGI 84 >gi|91788464|ref|YP_549416.1| GTP-binding protein, HSR1-like protein [Polaromonas sp. JS666] gi|91697689|gb|ABE44518.1| GTP-binding protein HflX [Polaromonas sp. JS666] Length = 386 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 78/171 (45%), Gaps = 39/171 (22%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDT 274 RN + I ++G++NAGKS+LFNAL K A D T D T L L V +SDT Sbjct: 192 RNSFTISLVGYTNAGKSTLFNALVKAR-AYAADQLFATLDTTTRQLYLGDAARSVSLSDT 250 Query: 275 AG-IRE-----------------------------TDDIVEK-EGIKRTFLEVENADL-- 301 G IR+ D +E+ E ++R E+ AD+ Sbjct: 251 VGFIRDLPHGLIDAFAATLQEAADADLLLHVVDGSNPDYLEQIEQVQRVLAEIGAADVPQ 310 Query: 302 ILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHL-ISSFTGEGL 351 IL+ ++++ ++ + P ++ +F D + + D + +S+ TGEGL Sbjct: 311 ILVFNKLDAVEKGNSPLSLRDMF--ELRDAFEGASRSVDRVFVSALTGEGL 359 >gi|315129875|gb|EFT85865.1| GTP-binding protein YqeH [Staphylococcus aureus subsp. aureus CGS03] Length = 366 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 8/67 (11%) Query: 216 IRNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270 IR + I+G +N GKS+L N L +KDV + PGTT D++ I LD ++ Sbjct: 157 IRENEDVYIVGTTNVGKSTLINKLIEASVGEKDVVTTSRFPGTTLDMIDIPLDESSFMY- 215 Query: 271 ISDTAGI 277 DT GI Sbjct: 216 --DTPGI 220 >gi|295695440|ref|YP_003588678.1| GTP-binding protein Era [Bacillus tusciae DSM 2912] gi|295411042|gb|ADG05534.1| GTP-binding protein Era [Bacillus tusciae DSM 2912] Length = 300 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 1/95 (1%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R+G+ ++G N GKS+L N L +AI++D P TTR+ + L E V DT G Sbjct: 8 RSGFA-ALVGRPNVGKSTLLNRLIGTKIAIMSDKPQTTRNRIRGVLTRENGQVIFLDTPG 66 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311 + + + ++ DL+L + ++ SK Sbjct: 67 VHRPKHRLGDYMNRLALATLQEVDLVLFVIDVTSK 101 >gi|241888775|ref|ZP_04776081.1| ribosome biogenesis GTPase YqeH [Gemella haemolysans ATCC 10379] gi|241864451|gb|EER68827.1| ribosome biogenesis GTPase YqeH [Gemella haemolysans ATCC 10379] Length = 372 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 15/101 (14%) Query: 216 IRNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270 +RNG + I+G +N GKS+ N L K+V + PGTT ++ I LD Sbjct: 161 LRNGKDVYIVGATNVGKSTFINKLIELTTGDKNVITTSHFPGTTLGMIEIPLD---RATS 217 Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311 I DT GI DI +L+ ++ L++ KEI ++ Sbjct: 218 IYDTPGIILDYDIAH-------YLDAQSLKLVMPKKEIKAR 251 >gi|227486686|ref|ZP_03917002.1| HflX subfamily GTP-binding protein [Anaerococcus lactolyticus ATCC 51172] gi|227235274|gb|EEI85289.1| HflX subfamily GTP-binding protein [Anaerococcus lactolyticus ATCC 51172] Length = 411 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 45/184 (24%), Positives = 84/184 (45%), Gaps = 26/184 (14%) Query: 218 NGYKIVILGHSNAGKSSLFNALAK----KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273 N + I ++G++NAGKS++ N + + + D+ T D T LD V ++D Sbjct: 187 NIFNISLVGYTNAGKSTILNGMMRLFGSEKYVYSDDLLFATLDTSTRRLDFSNTKVTLTD 246 Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI-----SFPKNIDFIFIGTK 328 T G + + T E++ AD++L++ I++ I + K++D I + K Sbjct: 247 TVGFIDNLSKELNDSFLTTLEEIKFADMLLIV--IDASHNIDGQLATIDKSLDEIELDGK 304 Query: 329 SDLY--------------STYTEEYDHL-ISSFTGEGLEELINKIKSILSNKFKKLPFSI 373 +Y S Y EY+ + IS+ E L L N+I ++ +++++ I Sbjct: 305 QIIYVFNKMDKVEDVTATSLYKREYERIFISAKNDEDLHNLKNEIVKVIKEEYREVTMHI 364 Query: 374 PSHK 377 P K Sbjct: 365 PFDK 368 >gi|49483844|ref|YP_041068.1| GTP-binding protein YqeH [Staphylococcus aureus subsp. aureus MRSA252] gi|282904178|ref|ZP_06312066.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp. aureus C160] gi|282906005|ref|ZP_06313860.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp. aureus Btn1260] gi|282908916|ref|ZP_06316734.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp. aureus WW2703/97] gi|283958360|ref|ZP_06375811.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp. aureus A017934/97] gi|295428174|ref|ZP_06820806.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp. aureus EMRSA16] gi|297590860|ref|ZP_06949498.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp. aureus MN8] gi|49241973|emb|CAG40668.1| putative GTPase [Staphylococcus aureus subsp. aureus MRSA252] gi|282327180|gb|EFB57475.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331297|gb|EFB60811.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp. aureus Btn1260] gi|282595796|gb|EFC00760.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp. aureus C160] gi|283790509|gb|EFC29326.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp. aureus A017934/97] gi|295128532|gb|EFG58166.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp. aureus EMRSA16] gi|297575746|gb|EFH94462.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp. aureus MN8] gi|315195499|gb|EFU25886.1| GTP-binding protein YqeH [Staphylococcus aureus subsp. aureus CGS00] Length = 366 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 42/153 (27%), Positives = 68/153 (44%), Gaps = 25/153 (16%) Query: 216 IRNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270 IR + I+G +N GKS+L N L +KDV + PGTT D++ I LD ++ Sbjct: 157 IRENEDVYIVGTTNVGKSTLINKLIEASVGEKDVVTTSRFPGTTLDMIDIPLDETSFMY- 215 Query: 271 ISDTAGI------------RETDDIVEKEGIKRTFLEVENADLILL--LKEINSKKEISF 316 DT GI +E I+ K+ IK+ ++ A + L I+ +S Sbjct: 216 --DTPGIIQDHQMTHLVSEKELKIIMPKKEIKQRVYQLNEAQTLFFGGLARIDY---VSG 270 Query: 317 PKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGE 349 K F +++ T TE+ + L + G+ Sbjct: 271 GKRPLICFFSNDLNIHRTKTEKANDLWRNQLGD 303 >gi|28210961|ref|NP_781905.1| translation initiation factor IF-2 [Clostridium tetani E88] gi|39931276|sp|Q895J8|IF2_CLOTE RecName: Full=Translation initiation factor IF-2 gi|28203400|gb|AAO35842.1| bacterial protein translation initiation factor 2 [Clostridium tetani E88] Length = 685 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 30/140 (21%), Positives = 71/140 (50%), Gaps = 4/140 (2%) Query: 140 EMQRRLSMEGMSGELSSLYGQWIDKLTH--IRSFIEADLDFSEEEDV-QNFSSKEVLNDI 196 EM+ ++++ +S L Y + I +L + + + ++DF E + + F + V ++ Sbjct: 105 EMEDTITVKELSDRLKKTYAEVIKELMMMGVMAAVNQEIDFEAAEKLGEKFEAIVVQREV 164 Query: 197 LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD 256 L+ + +I + + ++ + ++GH + GK+SL +A+ K++VA ++ G T+ Sbjct: 165 DVLEESVEQYIEEEEEEGTVKRPPVVTVMGHVDHGKTSLLDAIRKEEVA-ASEAGGITQH 223 Query: 257 VLTIDLDLEGYLVKISDTAG 276 + + + G + DT G Sbjct: 224 IGAYTITINGEKITFLDTPG 243 >gi|225387778|ref|ZP_03757542.1| hypothetical protein CLOSTASPAR_01548 [Clostridium asparagiforme DSM 15981] gi|225046112|gb|EEG56358.1| hypothetical protein CLOSTASPAR_01548 [Clostridium asparagiforme DSM 15981] Length = 303 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 51/90 (56%), Gaps = 8/90 (8%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRET 280 + ++G N GKS+L N L + +AI +D P TTR+ + T+ D G ++ + DT GI + Sbjct: 12 VTLIGRPNVGKSTLMNHLIGQKIAITSDKPQTTRNRIQTVYTDERGQIIFL-DTPGIHKA 70 Query: 281 DDIVEKEGI---KRTFLEVENADLILLLKE 307 + + + + +RT EV D+IL L E Sbjct: 71 KNKLGEYMVTVAERTLTEV---DVILWLVE 97 >gi|149916653|ref|ZP_01905155.1| GTP-binding protein [Plesiocystis pacifica SIR-1] gi|149822370|gb|EDM81759.1| GTP-binding protein [Plesiocystis pacifica SIR-1] Length = 465 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 5/70 (7%) Query: 211 KLGEIIRNGY----KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG 266 + G+ R G ++ ++G++NAGK+SL NAL + +++ D+P T D T L G Sbjct: 226 RAGQRQREGRASCGRVALVGYTNAGKTSLMNALTQAELS-ARDMPFETLDTTTRSLTRHG 284 Query: 267 YLVKISDTAG 276 V ISDT G Sbjct: 285 GDVIISDTVG 294 >gi|167646573|ref|YP_001684236.1| GTP-binding proten HflX [Caulobacter sp. K31] gi|167349003|gb|ABZ71738.1| GTP-binding proten HflX [Caulobacter sp. K31] Length = 446 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 51/225 (22%), Positives = 102/225 (45%), Gaps = 37/225 (16%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280 + ++G++NAGKS+LFN L V + D+ T D ++ L +G +SDT G Sbjct: 216 VALVGYTNAGKSTLFNRLTHATV-VAQDMLFATLDPTLRNVKLPDGRPAILSDTVGF--I 272 Query: 281 DDIVEK--EGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF-------------- 324 D+ + E + T EV+ AD++L ++++ + + +++ + Sbjct: 273 SDLPHELVEAFRATLEEVQEADVVLHVRDVANPDTDAQARDVQVVLAELKVTAEDGKTII 332 Query: 325 -IGTKSDLYSTYTEEY---------DHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374 + K DL E +S+ TGEG EL+ ++ +++ + P ++ Sbjct: 333 EVWNKIDLVDGEAREILDGQARRLGASAVSAVTGEGCAELLKRVGTLIDDTP---PVAVR 389 Query: 375 SHKRHLYHLSQTVRYLEMASLNEK-DCGLDIIAENLRLASVSLGK 418 + L+ R + S +E+ + G+ +IA RL + +LG+ Sbjct: 390 LAAKDGEALAWIYRNGRVESRDEEAEGGVRLIA---RLDAQALGR 431 >gi|88858905|ref|ZP_01133546.1| HflX, putative GTPase subunit of protease with nucleoside triP hydrolase domain [Pseudoalteromonas tunicata D2] gi|88819131|gb|EAR28945.1| HflX, putative GTPase subunit of protease with nucleoside triP hydrolase domain [Pseudoalteromonas tunicata D2] Length = 429 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 53/213 (24%), Positives = 87/213 (40%), Gaps = 33/213 (15%) Query: 190 KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249 ++ + IL + ++ QG+ + ++G++NAGKS+LFN DV Sbjct: 168 RDKIKTILKRLDKVAKQREQGRRARTRNEIPTVSLVGYTNAGKSTLFNRATASDVYAADQ 227 Query: 250 IPGTTRDVL-TIDLDLEGYLVKISDTAG-IRE-TDDIVEKEGIKRTFLEVENADLILLLK 306 + T L ID+ G ++ ++DT G IR D+V K T +E ADL L + Sbjct: 228 LFATLDPTLRKIDVADIGSVI-MADTVGFIRHLPHDLV--AAFKATLVETREADLQLHVI 284 Query: 307 EINSKKEISFPKNIDFI---------------FIGTKSDLYSTYTEEYDH---------L 342 ++ ++ +NID + I K DL D Sbjct: 285 DVADERR---QENIDQVNDVLHEIEADDVPQLLIYNKIDLVEELVPRIDRDDEGKPIRIW 341 Query: 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375 +S+ TG G E L+ I L+ K K +P+ Sbjct: 342 LSAQTGVGCELLLQAISECLAEKMLKCRLRVPA 374 >gi|297171661|gb|ADI22655.1| GTPase [uncultured Gemmatimonadales bacterium HF0500_22O06] Length = 317 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 29/100 (29%), Positives = 52/100 (52%), Gaps = 1/100 (1%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273 E+ R GY + ++G N GKS+L N L + ++IVT TT +T L + + D Sbjct: 15 EVTRTGY-VTLVGRPNVGKSTLLNQLVGEHLSIVTPKAQTTWQRVTGILSVGTDQMIFLD 73 Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313 T G+ E D++++ + + AD+ +LL + +K + Sbjct: 74 TPGLLEAKDMLQRAMLGAALEALAEADITILLIDSTTKPD 113 >gi|315645734|ref|ZP_07898858.1| ribosome biogenesis GTP-binding protein YsxC [Paenibacillus vortex V453] gi|315279212|gb|EFU42522.1| ribosome biogenesis GTP-binding protein YsxC [Paenibacillus vortex V453] Length = 214 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 11/121 (9%) Query: 221 KIVILGHSNAGKSSLFNAL-AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS--DTAGI 277 +I + G SN GKSSL N + A+K++A + PG T+ + ++ + YLV A + Sbjct: 25 EIALAGRSNVGKSSLINRMIARKNLARTSSTPGKTQQLNYYRVNDDLYLVDFPGYGYAKV 84 Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEISFPK-----NIDFIFIGTKS 329 +T E I+R L E L+LL+ ++ SK +IS + N + TK+ Sbjct: 85 SKTQRAAFGEMIERYLLNREELKLVLLIVDMRHPPSKDDISMYEWLQHYNRPVCVVATKA 144 Query: 330 D 330 D Sbjct: 145 D 145 >gi|72382687|ref|YP_292042.1| GTP-binding protein Era [Prochlorococcus marinus str. NATL2A] gi|72002537|gb|AAZ58339.1| Small GTP-binding protein domain:GTP-binding:GTP-binding protein Era [Prochlorococcus marinus str. NATL2A] Length = 313 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 43/177 (24%), Positives = 79/177 (44%), Gaps = 26/177 (14%) Query: 212 LGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL 268 LG++ + +K I ++G N GKS+ N + +AI + I TTR+ L + L E Sbjct: 3 LGDLSQEDFKSGFIALIGRPNVGKSTFINKFIGEKIAITSPIAQTTRNRLKVILTNEKSQ 62 Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------ISFPKN--I 320 + DT GI + ++ + ++ + + D +L++ E + ++ +N I Sbjct: 63 IIFVDTPGIHKPHHLLGERLVQSAKRSIGDVDAVLVIFEASHSPGRGDAFILNLIRNLKI 122 Query: 321 DFIFIGTKSDL-----YSTYTEEYDHLI----------SSFTGEGLEELINKIKSIL 362 I K DL + +EY + S+ TG+G ELI++I+ L Sbjct: 123 PVIVALNKWDLLALSQFKERKKEYFEFLEGTNWPVFCCSALTGQGCNELISEIEETL 179 >gi|294677339|ref|YP_003577954.1| GTP-binding proten HflX [Rhodobacter capsulatus SB 1003] gi|294476159|gb|ADE85547.1| GTP-binding proten HflX [Rhodobacter capsulatus SB 1003] Length = 427 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 55/232 (23%), Positives = 98/232 (42%), Gaps = 38/232 (16%) Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDI 250 + ++ LK ++ + +L R + ++G++NAGKSSLFN + +V + D+ Sbjct: 178 DQVIRLKRQLAKVVKTRELHRAARRKVPFPIVALVGYTNAGKSSLFNRMTGAEV-LAKDM 236 Query: 251 PGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEK--EGIKRTFLEVENADLILLLKE 307 T D L L G + +SDT G D+ + + T EV ADLIL +++ Sbjct: 237 LFATLDPTMRGLVLPSGRRIILSDTVGF--ISDLPHELVAAFRATLEEVLEADLILHVRD 294 Query: 308 INSKKE----------------------ISFPKNIDFIFIGTKSDLYSTYTEEYD-HLIS 344 I+ + I ID + + L + D +S Sbjct: 295 ISHPETEEQAEDVGEILESLGVAEDVALIEVWNKIDALSEAVRQGLLAQDARRSDVQAVS 354 Query: 345 SFTGEGLEELINKIKSILSNKFKK----LPFSIPSHKRHLYHLSQTVRYLEM 392 + +GEG+ L+ I++ L + + LPF+ + K H + +Q V E+ Sbjct: 355 ALSGEGIGALVAAIEARLGEAWIEEDLDLPFT--AGKEHAWLHAQGVIRTEL 404 >gi|290960557|ref|YP_003491739.1| GTP-binding protein [Streptomyces scabiei 87.22] gi|260650083|emb|CBG73199.1| GTP-binding protein [Streptomyces scabiei 87.22] Length = 320 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 61/130 (46%), Gaps = 16/130 (12%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R G+ + G NAGKS+L NAL + VAI D P TTR + + + + DT G Sbjct: 20 RAGFACFV-GRPNAGKSTLTNALVGQKVAITADQPQTTRHTVRGIVHRPDAQLILVDTPG 78 Query: 277 IRETDDIVEK---EGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIF 324 + + ++ + + ++ T+ EV D+I N K KE++ K I Sbjct: 79 LHKPRTLLGQRLNDVVRTTWAEV---DVIGFCLPANEKLGPGDRFIAKELASIKKTPKIA 135 Query: 325 IGTKSDLYST 334 I TK+DL + Sbjct: 136 IVTKTDLVES 145 >gi|253991436|ref|YP_003042792.1| hypothetical protein PAU_03963 [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782886|emb|CAQ86051.1| conserved hypothetical protein [Photorhabdus asymbiotica] Length = 250 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 3/82 (3%) Query: 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV 284 +G + AGKSSL NAL + +V V+DI TRDVL + L + + + D G+ E++ Sbjct: 1 MGKTGAGKSSLCNALFQGEVTPVSDIDACTRDVLRLRLRSGEHSLILVDLPGVGESEQRD 60 Query: 285 EK-EGIKRTFLEVENADLILLL 305 E+ E + R L DLIL + Sbjct: 61 EEYEYLYRKVL--PELDLILWI 80 >gi|257425721|ref|ZP_05602145.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp. aureus 55/2053] gi|257428382|ref|ZP_05604780.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp. aureus 65-1322] gi|257431019|ref|ZP_05607399.1| GTP-binding protein YqeH [Staphylococcus aureus subsp. aureus 68-397] gi|257433707|ref|ZP_05610065.1| GTP-binding protein YqeH [Staphylococcus aureus subsp. aureus E1410] gi|257436621|ref|ZP_05612665.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp. aureus M876] gi|282911234|ref|ZP_06319036.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp. aureus WBG10049] gi|282914403|ref|ZP_06322189.1| GTP-binding protein [Staphylococcus aureus subsp. aureus M899] gi|282924697|ref|ZP_06332365.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp. aureus C101] gi|293503477|ref|ZP_06667324.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp. aureus 58-424] gi|293510494|ref|ZP_06669200.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp. aureus M809] gi|293531034|ref|ZP_06671716.1| GTP-binding protein [Staphylococcus aureus subsp. aureus M1015] gi|257271415|gb|EEV03561.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp. aureus 55/2053] gi|257275223|gb|EEV06710.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp. aureus 65-1322] gi|257278449|gb|EEV09085.1| GTP-binding protein YqeH [Staphylococcus aureus subsp. aureus 68-397] gi|257281800|gb|EEV11937.1| GTP-binding protein YqeH [Staphylococcus aureus subsp. aureus E1410] gi|257283972|gb|EEV14095.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp. aureus M876] gi|282313532|gb|EFB43927.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp. aureus C101] gi|282321584|gb|EFB51909.1| GTP-binding protein [Staphylococcus aureus subsp. aureus M899] gi|282324929|gb|EFB55239.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp. aureus WBG10049] gi|290920302|gb|EFD97368.1| GTP-binding protein [Staphylococcus aureus subsp. aureus M1015] gi|291095143|gb|EFE25408.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp. aureus 58-424] gi|291466858|gb|EFF09378.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp. aureus M809] gi|312437935|gb|ADQ77006.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp. aureus TCH60] Length = 366 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 42/153 (27%), Positives = 68/153 (44%), Gaps = 25/153 (16%) Query: 216 IRNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270 IR + I+G +N GKS+L N L +KDV + PGTT D++ I LD ++ Sbjct: 157 IRENEDVYIVGTTNVGKSTLINKLIEASVGEKDVVTTSRFPGTTLDMIDIPLDETSFMY- 215 Query: 271 ISDTAGI------------RETDDIVEKEGIKRTFLEVENADLILL--LKEINSKKEISF 316 DT GI +E I+ K+ IK+ ++ A + L I+ +S Sbjct: 216 --DTPGIIQDHQMTHLVSEKELKIIMPKKEIKQRVYQLNEAQTLFFGGLARIDY---VSG 270 Query: 317 PKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGE 349 K F +++ T TE+ + L + G+ Sbjct: 271 GKRPLICFFSNDLNIHRTKTEKANDLWRNQLGD 303 >gi|225850021|ref|YP_002730255.1| ferrous iron transport protein B [Persephonella marina EX-H1] gi|225645364|gb|ACO03550.1| ferrous iron transport protein B [Persephonella marina EX-H1] Length = 721 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 1/83 (1%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ + G+ N GK++L NALA ++ V + PG T + ++ +GY + + D G Sbjct: 7 KVAVAGNPNTGKTTLINALAGTNLH-VGNWPGVTVEKKEAIIEYKGYKIHLVDLPGTYSL 65 Query: 281 DDIVEKEGIKRTFLEVENADLIL 303 + V +E I FL E DL++ Sbjct: 66 SNDVAEEKIAIDFLVKEKPDLVI 88 >gi|82751199|ref|YP_416940.1| GTP-binding protein YqeH [Staphylococcus aureus RF122] gi|82656730|emb|CAI81158.1| conserved hypothetical protein [Staphylococcus aureus RF122] Length = 366 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 8/67 (11%) Query: 216 IRNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270 IR + I+G +N GKS+L N L +KDV + PGTT D++ I LD ++ Sbjct: 157 IRENEDVYIVGTTNVGKSTLINKLIEDSVGEKDVVTTSRFPGTTLDMIDIPLDETSFMY- 215 Query: 271 ISDTAGI 277 DT GI Sbjct: 216 --DTPGI 220 >gi|85000519|ref|XP_954978.1| ORF1-related protein [Theileria annulata strain Ankara] gi|65303124|emb|CAI75502.1| ORF1-related protein, putative [Theileria annulata] Length = 651 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 36/103 (34%), Positives = 52/103 (50%), Gaps = 23/103 (22%) Query: 222 IVILGHSNAGKSSLFNA-LAKKDVA------IVTDIPGTTRDVLTIDLDLEGYLVKISDT 274 + ++G SN GKSSLFN+ LA+ A IV++ PGTTR+ L+G + + DT Sbjct: 3 VSLIGRSNVGKSSLFNSILAQAGKASNILKSIVSEKPGTTRNSKQAQFYLKGNKITLVDT 62 Query: 275 AGI---------RETDD---IVEKEGIKRTFLEVENADLILLL 305 G RE I+EKE T VE+++LI + Sbjct: 63 GGFEAFLTKTPKREDSSIFKIIEKE----THKAVESSNLIFFV 101 >gi|304380806|ref|ZP_07363473.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|304340682|gb|EFM06615.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp. aureus ATCC BAA-39] Length = 366 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 8/67 (11%) Query: 216 IRNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270 IR + I+G +N GKS+L N L +KDV + PGTT D++ I LD ++ Sbjct: 157 IRENEDVYIVGTTNVGKSTLINKLIEASVGEKDVVTTSRFPGTTLDMIDIPLDETSFMY- 215 Query: 271 ISDTAGI 277 DT GI Sbjct: 216 --DTPGI 220 >gi|297156395|gb|ADI06107.1| ribosome-associated GTPase [Streptomyces bingchenggensis BCW-1] Length = 365 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 37/95 (38%), Positives = 49/95 (51%), Gaps = 15/95 (15%) Query: 212 LGEIIRNGYKIVILGHSNAGKSSLFNAL---AKKDVAIVTDIPG------TTRDVLTIDL 262 LG ++ +G V+LG S AGKS+L NAL A + V V D G TTRD+L L Sbjct: 192 LGAVLSSGTS-VLLGQSGAGKSTLANALLGEAAQQVYEVRDSDGKGRHTTTTRDLLR--L 248 Query: 263 DLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 G L+ DT G+R EG+ + F E+E Sbjct: 249 PWGGVLI---DTPGVRGVGLWDAGEGVAQAFSEIE 280 >gi|269468141|gb|EEZ79848.1| cell division checkpoint GTPase YihA [uncultured SUP05 cluster bacterium] Length = 199 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 1/55 (1%) Query: 218 NGYKIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 GY+++ G SNAGKSS N L +K +A V+ PG T+ ++ +LD LV + Sbjct: 24 QGYEVIFAGRSNAGKSSAINTLTLQKKLAKVSRTPGRTQHLVFFELDQNRRLVDL 78 >gi|255319822|ref|ZP_05361027.1| GTPase EngB [Acinetobacter radioresistens SK82] gi|262380354|ref|ZP_06073508.1| ribosome biogenesis GTP-binding protein YsxC [Acinetobacter radioresistens SH164] gi|255303141|gb|EET82353.1| GTPase EngB [Acinetobacter radioresistens SK82] gi|262297800|gb|EEY85715.1| ribosome biogenesis GTP-binding protein YsxC [Acinetobacter radioresistens SH164] Length = 278 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 18/101 (17%) Query: 219 GYKIVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTR----------DVLTIDLDLEGY 267 GY+I G SNAGKSS NAL +K +A + PG T+ D +DL GY Sbjct: 62 GYEIAFAGRSNAGKSSAINALTNQKQLARASKKPGRTQMINFFSLGNPDQRLVDLPGYGY 121 Query: 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEI 308 A + ET IV ++ ++ + E+ ++LL +I Sbjct: 122 -------AAVPETMKIVWQKELENYLIHRESLQGLVLLMDI 155 >gi|237740467|ref|ZP_04570948.1| GTP binding protein [Fusobacterium sp. 2_1_31] gi|229422484|gb|EEO37531.1| GTP binding protein [Fusobacterium sp. 2_1_31] Length = 297 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 45/84 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G N GKS+L N + + VAIV+D GTTRD + L+++ DT GI + Sbjct: 6 IAIVGRPNVGKSTLINKMVAEKVAIVSDKAGTTRDNIKGILNVKDNQYIFIDTPGIHKPQ 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + +++ D+IL L Sbjct: 66 HLLGEYMTNIAINILKDVDVILFL 89 >gi|194367174|ref|YP_002029784.1| ribosome biogenesis GTP-binding protein YsxC [Stenotrophomonas maltophilia R551-3] gi|194349978|gb|ACF53101.1| GTP-binding protein HSR1-related [Stenotrophomonas maltophilia R551-3] Length = 202 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 2/68 (2%) Query: 206 HISQGKLGEIIRN-GYKIVILGHSNAGKSSLFNALAKKD-VAIVTDIPGTTRDVLTIDLD 263 H+S +G++ + G ++ G SNAGKSS NAL +++ +A V+ PG T+ ++ + Sbjct: 13 HLSAHNMGQLPPDEGAEVAFAGRSNAGKSSALNALTRQNSLARVSKTPGRTQQLVFFQVT 72 Query: 264 LEGYLVKI 271 E +LV + Sbjct: 73 PEAHLVDL 80 >gi|157963353|ref|YP_001503387.1| small GTP-binding protein [Shewanella pealeana ATCC 700345] gi|157848353|gb|ABV88852.1| small GTP-binding protein [Shewanella pealeana ATCC 700345] Length = 431 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 50/188 (26%), Positives = 79/188 (42%), Gaps = 40/188 (21%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRE- 279 + ++G++NAGKS+LFN L DV + T L L+L V ++DT G IR Sbjct: 200 VSLVGYTNAGKSTLFNGLTTSDVYAADQLFATLDPTLR-KLELPDGDVILADTVGFIRHL 258 Query: 280 TDDIVEKEGIKRTFLEVENADLIL-------------------LLKEINSKKEISFPKNI 320 D+V K T E ADL+L +LKEI++ I P+ Sbjct: 259 PHDLV--AAFKATLQETRQADLLLHVVDSADEKMADNFEQVQKVLKEIDA---IDIPQ-- 311 Query: 321 DFIFIGTKSDLYSTYTEEYDH---------LISSFTGEGLEELINKIKSILSNKFKKLPF 371 + + K DL D+ +S+ +GLE + + I ++ ++L Sbjct: 312 --LIVCNKIDLLDEVKPRIDYDDEGTPIRVWVSAQQQKGLELVEDAINQLVGKAIQELTL 369 Query: 372 SIPSHKRH 379 IP+ H Sbjct: 370 QIPASAGH 377 >gi|57239269|ref|YP_180405.1| GTP-binding protein Era [Ehrlichia ruminantium str. Welgevonden] gi|58579232|ref|YP_197444.1| GTP-binding protein Era [Ehrlichia ruminantium str. Welgevonden] gi|81819234|sp|Q5HAY9|ERA_EHRRW RecName: Full=GTPase Era gi|57161348|emb|CAH58271.1| putative GTP-binding protein ERA [Ehrlichia ruminantium str. Welgevonden] gi|58417858|emb|CAI27062.1| GTP-binding protein Era homolog [Ehrlichia ruminantium str. Welgevonden] Length = 296 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 72/154 (46%), Gaps = 21/154 (13%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 I+G +NAGKS+L N L + VA VT TTR + + E + DT GI Sbjct: 13 IVGATNAGKSTLVNVLVGQKVAAVTPKVQTTRVRMHAVSNHENVQLIFIDTPGIFSPKTK 72 Query: 284 VEKEGIKRTFLEVENADLILLLKEINS------KKEISFPK--NIDFIFIGTKSD----- 330 +EK +K ++ ++ + +++L ++ + KK I K N++ I + K D Sbjct: 73 LEKFLVKHAWMSLKGIENVIVLVDVKNYLNQHLKKIIDRIKHSNLNAILVLNKIDIVHQS 132 Query: 331 --------LYSTYTEEYDHLISSFTGEGLEELIN 356 +YS Y IS+ G G+++L++ Sbjct: 133 IVSEVIEYMYSLYKFSKAFTISALYGIGIDKLVD 166 >gi|302333273|gb|ADL23466.1| GTPase family protein [Staphylococcus aureus subsp. aureus JKD6159] Length = 366 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 8/67 (11%) Query: 216 IRNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270 IR + I+G +N GKS+L N L +KDV + PGTT D++ I LD ++ Sbjct: 157 IRENEDVYIVGTTNVGKSTLINKLIEASVGEKDVVTTSRFPGTTLDMIDIPLDETSFMY- 215 Query: 271 ISDTAGI 277 DT GI Sbjct: 216 --DTPGI 220 >gi|258424024|ref|ZP_05686906.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus A9635] gi|257845645|gb|EEV69677.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus A9635] Length = 366 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 8/67 (11%) Query: 216 IRNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270 IR + I+G +N GKS+L N L +KDV + PGTT D++ I LD ++ Sbjct: 157 IRENEDVYIVGTTNVGKSTLINKLIEASVGEKDVVTTSRFPGTTLDMIDIPLDETSFMY- 215 Query: 271 ISDTAGI 277 DT GI Sbjct: 216 --DTPGI 220 >gi|207743440|ref|YP_002259832.1| gtp-binding protein enga (partial sequence n terminus) [Ralstonia solanacearum IPO1609] gi|206594837|emb|CAQ61764.1| probable gtp-binding protein enga (partial sequence n terminus) [Ralstonia solanacearum IPO1609] Length = 122 Score = 42.7 bits (99), Expect = 0.12, Method: Composition-based stats. Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 9/89 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+LFN L + A+V D+PG TRD + + DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVADMPGLTRDRHYGEGRVGERPFIAIDTGGF---- 60 Query: 282 DIVEKEGI-----KRTFLEVENADLILLL 305 + V KEGI K+T V AD+++ + Sbjct: 61 EPVAKEGIVAEMAKQTRQAVVEADVVIFI 89 >gi|157364142|ref|YP_001470909.1| GTP-binding protein Era [Thermotoga lettingae TMO] gi|189037681|sp|A8F6R1|ERA_THELT RecName: Full=GTPase Era gi|157314746|gb|ABV33845.1| GTP-binding protein Era [Thermotoga lettingae TMO] Length = 296 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 44/192 (22%), Positives = 82/192 (42%), Gaps = 30/192 (15%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G NAGKSSL N+ + V IV++ P TTR+ + + + +DT GI + Sbjct: 6 VTLVGRPNAGKSSLINSFIGRKVLIVSEKPQTTRNKIRCIYTDSYHQIIFTDTPGIHKPV 65 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEIN----------------SKKE-------ISFPK 318 + + +K ++ DL+L + + SK E I K Sbjct: 66 HRLGEFMVKVAIQAMKGVDLVLFVVDATKGFGEPEKRICDLVKLSKTETFLVINKIDLAK 125 Query: 319 NIDFI--FIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376 N +F+ I ++ D +S S EG+EEL+ IK+ + P ++ Sbjct: 126 NYEFLAKTIVSECDCFSKV-----FFTSVVKNEGIEELLQAIKNCMPEGPMYFPENMLID 180 Query: 377 KRHLYHLSQTVR 388 + + +++ +R Sbjct: 181 RPISFQIAEIIR 192 >gi|326802551|ref|YP_004320370.1| GTP-binding protein engB [Sphingobacterium sp. 21] gi|326553315|gb|ADZ81700.1| GTP-binding protein engB [Sphingobacterium sp. 21] Length = 206 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 11/127 (8%) Query: 225 LGHSNAGKSSLFNALAK-KDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS--DTAGIRETD 281 +G SN GKSSL NAL + K +A + PG T+ + ++ E +LV + A +T+ Sbjct: 35 IGRSNVGKSSLINALTQHKGLAKTSQTPGKTQLINHFLVNKEWFLVDLPGYGYAKTSKTN 94 Query: 282 DIVEKEGIKRTFLEVENADLILLL---KEINSKKEISF-----PKNIDFIFIGTKSDLYS 333 ++ IK+ EN + +L + K ++ F K I FI I TK+D S Sbjct: 95 RSEWEKFIKKYLFNRENLQCVFVLIDSRLTPQKNDLDFCCLLGEKGIPFILIFTKADKQS 154 Query: 334 TYTEEYD 340 E++ Sbjct: 155 KIKSEHN 161 >gi|306825208|ref|ZP_07458550.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432644|gb|EFM35618.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 301 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 12/84 (14%) Query: 201 NDISSHISQGKLGEIIRNGYKI-----VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255 D + + K+ G KI +I+G NAGKS+L N LA K +A+V + PG T+ Sbjct: 116 TDAAKKLMADKIARQKERGIKIETLRTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTK 175 Query: 256 --DVLTIDLDLEGYLVKISDTAGI 277 L + DLE I DT GI Sbjct: 176 GQQWLKTNKDLE-----ILDTPGI 194 >gi|282165329|ref|YP_003357714.1| GTP-binding protein [Methanocella paludicola SANAE] gi|282157643|dbj|BAI62731.1| GTP-binding protein [Methanocella paludicola SANAE] Length = 420 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 54/193 (27%), Positives = 82/193 (42%), Gaps = 27/193 (13%) Query: 218 NGYKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 G+ +V L G++NAGKS+L NAL + V + D TT T L + ++DT G Sbjct: 188 KGFDLVALAGYTNAGKSTLMNALVGETV-VAKDQLFTTLVPTTRSLQIGQRKTLLTDTVG 246 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK-------------NIDFI 323 + E + T E+ AD+I+L+ +++ E K + I Sbjct: 247 FIKNLPHFMVEAFRSTLEEIYLADVIILVVDVSEPPEALVDKLVTCHDTMWDEIGPVPVI 306 Query: 324 FIGTKSDLYS-----------TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372 KSDL + + + +IS+ TGEGL+EL KI L K+ Sbjct: 307 TALNKSDLITEEELEERKQAIVHLAPHPVVISARTGEGLDELKQKIGKYLP-KWTSSEVV 365 Query: 373 IPSHKRHLYHLSQ 385 +P L LSQ Sbjct: 366 LPRTVEGLSMLSQ 378 >gi|193213958|ref|YP_001995157.1| GTP-binding proten HflX [Chloroherpeton thalassium ATCC 35110] gi|193087435|gb|ACF12710.1| GTP-binding proten HflX [Chloroherpeton thalassium ATCC 35110] Length = 432 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 41/116 (35%), Positives = 57/116 (49%), Gaps = 6/116 (5%) Query: 192 VLNDILFLKNDISSHISQGKLGEIIRNG-YKIVILGHSNAGKSSLFNALAKKDVAIVTDI 250 + I LK + H Q + R+ KI ++G++NAGKS+L NAL K A D Sbjct: 178 IWRRISTLKQKLKEHSRQRETRTSWRDSITKIALVGYTNAGKSTLMNALCPKANAYSEDR 237 Query: 251 PGTTRDVLTIDLDL-EGYLVKISDTAG-IRE-TDDIVEKEGIKRTFLEVENADLIL 303 T D T L L + +SDT G IR+ ++V E K T EV AD++L Sbjct: 238 LFATLDTTTRRLHLKQNKQAILSDTVGFIRKLPHNLV--ESFKSTLEEVREADILL 291 >gi|145590303|ref|YP_001152305.1| small GTP-binding protein [Pyrobaculum arsenaticum DSM 13514] gi|145282071|gb|ABP49653.1| small GTP-binding protein [Pyrobaculum arsenaticum DSM 13514] Length = 381 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 1/85 (1%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 ++V+ G+++AGK++LFN L ++ IV P T + + LD+ G V ++DT G + Sbjct: 187 EVVLTGYTSAGKTTLFNRLVSEN-KIVDGRPFATLETYSRALDIWGKRVVLTDTIGFIDD 245 Query: 281 DDIVEKEGIKRTFLEVENADLILLL 305 V E T E+ +AD ILL+ Sbjct: 246 LPPVLIESFHSTLQEIIDADRILLV 270 >gi|119961109|ref|YP_947366.1| GTP-binding protein [Arthrobacter aurescens TC1] gi|119947968|gb|ABM06879.1| putative GTP-binding protein [Arthrobacter aurescens TC1] Length = 629 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 46/183 (25%), Positives = 73/183 (39%), Gaps = 41/183 (22%) Query: 222 IVILGHSNAGKSSLFNALAKKDV----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 + I G++NAGKSSL N L V A+ + T R T D G ++DT G Sbjct: 410 VAIAGYTNAGKSSLLNRLTDAGVLVENALFATLDPTVRKAQTPD----GIGYTLADTVGF 465 Query: 278 RETDDIVEKEGIKRTFLEVENADLIL-------------------LLKEINSKKEISFPK 318 + E + T EV +ADLIL + E++++K Sbjct: 466 VRSLPTQLIEAFRSTLEEVADADLILHVVDASHPDPEGQIAAVRAVFTEVDARK------ 519 Query: 319 NIDFIFIGTKSDLYSTYT-------EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPF 371 + I + K D+ + E ++S+ TG+G+ EL+ I + +L Sbjct: 520 -VPEIIVLNKVDVADPFVVERLKQKEPRHAVVSTRTGQGIAELLEDISRSIPRPGVRLEL 578 Query: 372 SIP 374 IP Sbjct: 579 LIP 581 >gi|220930466|ref|YP_002507375.1| small GTP-binding protein [Clostridium cellulolyticum H10] gi|220000794|gb|ACL77395.1| small GTP-binding protein [Clostridium cellulolyticum H10] Length = 396 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 33/102 (32%), Positives = 55/102 (53%), Gaps = 5/102 (4%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276 N I + G N+GKSSL N + +D+A+V++I GTT D + ++L V DTAG Sbjct: 10 NRLHIALFGRRNSGKSSLINTITGQDIALVSEIAGTTTDPVYKAMELHPIGPVMFIDTAG 69 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK 318 + + E I++T ++ D+ ++ I S+ E+S K Sbjct: 70 FDDVGTLGELR-IEKTRKVIDKTDIAIV---IFSETELSMEK 107 >gi|20807571|ref|NP_622742.1| thiophene degradation protein F [Thermoanaerobacter tengcongensis MB4] gi|20516108|gb|AAM24346.1| thiophene degradation protein F [Thermoanaerobacter tengcongensis MB4] Length = 93 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 7/92 (7%) Query: 4 EKETIFAVSTGALPSAISIIRLSGPSCF----QVCEFICKKKKPFPRKASLRYFFGLD-- 57 E +TI A+ST + I I+R+SG ++ F KK + +L Y +D Sbjct: 2 EFDTIAAISTSPGEAGIGIVRMSGDGALDIISRIFRFYKKKDVKNVKTHTLHYGHIVDPD 61 Query: 58 -GRILDKGLLIVFPSPESFTGEDSAEFHVHGG 88 G + D+ L+ + P ++T ED E + HGG Sbjct: 62 TGEVYDEVLVSIMKKPNTYTREDIVEINCHGG 93 >gi|49474067|ref|YP_032109.1| GTP-binding protein Era [Bartonella quintana str. Toulouse] gi|49239571|emb|CAF25928.1| GTP-binding protein era homolog [Bartonella quintana str. Toulouse] Length = 301 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 46/179 (25%), Positives = 84/179 (46%), Gaps = 26/179 (14%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R+G+ +V++G NAGKS+L N L V+IVT TTR ++ + + + + DT G Sbjct: 8 RSGF-VVLIGMPNAGKSTLVNQLVGTKVSIVTHKVQTTRTLVRGIVIHDNTQIVLIDTPG 66 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSK------KEISFPKNI--DFIFIGTK 328 + +E+ + + ++AD++L+L + +S + +NI D I + K Sbjct: 67 VFRPHKRLERAMVSAAWGGAKSADVLLVLIDAHSGLSDEVCTMLDIVENIKQDKILVLNK 126 Query: 329 SD---------LYSTYTEEYDHL----ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374 D L + E L IS+ +G G ++L++ LS ++ P+ P Sbjct: 127 IDTVAKLSLLALTAQINERVKFLQTFMISALSGSGCKDLLHA----LSTMMQRGPWYYP 181 >gi|266621740|ref|ZP_06114675.1| GTP-binding protein Era [Clostridium hathewayi DSM 13479] gi|288866563|gb|EFC98861.1| GTP-binding protein Era [Clostridium hathewayi DSM 13479] Length = 280 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 51/94 (54%), Gaps = 5/94 (5%) Query: 218 NGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISD 273 N YK + ++G N GKS+L N L + +AI +D P TTR+ + T+ D G ++ + D Sbjct: 3 NNYKSGFVTLIGRPNVGKSTLMNHLIGQKIAITSDKPQTTRNRIQTVYTDERGQIIFL-D 61 Query: 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307 T GI + + + + + ++ D++L L E Sbjct: 62 TPGIHKAKNKLGEYMVSVAEHTLKEVDVVLWLVE 95 >gi|237730251|ref|ZP_04560732.1| conserved hypothetical protein [Citrobacter sp. 30_2] gi|226905790|gb|EEH91708.1| conserved hypothetical protein [Citrobacter sp. 30_2] Length = 287 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 2/112 (1%) Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253 N + L +S I Q ++ ++ I I+G + AGKSSL NAL +V+ V+DI Sbjct: 12 NSLAGLPQWVSERILQ-QINQLTHYEPVIGIMGKTGAGKSSLCNALFGGEVSPVSDITAC 70 Query: 254 TRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 TR+ L L + + + D G+ E+ + + E + ++ DL+L L Sbjct: 71 TREPLRFHLQVGKRYMTLVDLPGVGES-NTRDAEYVALYRKQLPQLDLVLWL 121 >gi|194335605|ref|YP_002017399.1| GTP-binding protein Era [Pelodictyon phaeoclathratiforme BU-1] gi|194308082|gb|ACF42782.1| GTP-binding protein Era [Pelodictyon phaeoclathratiforme BU-1] Length = 306 Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust. Identities = 31/93 (33%), Positives = 49/93 (52%), Gaps = 4/93 (4%) Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282 +I+G NAGKS+L N L ++IVT P TTR +T E + DT GI + Sbjct: 12 IIIGPPNAGKSTLLNELLDYKLSIVTPKPQTTRKKITGIYHNEKCQIIFLDTPGIMKPQQ 71 Query: 283 IVEKE--GIKRTFLEVENADLILLLKEINSKKE 313 + + G+ R L ++AD+++ L + KK+ Sbjct: 72 KLHESMLGVIRDTL--KDADVVIALLPFSGKKD 102 >gi|283470875|emb|CAQ50086.1| GTPase family protein [Staphylococcus aureus subsp. aureus ST398] Length = 366 Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 8/67 (11%) Query: 216 IRNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270 IR + I+G +N GKS+L N L +KDV + PGTT D++ I LD ++ Sbjct: 157 IRENEDVYIVGTTNVGKSTLINKLIEASVGEKDVVTTSRFPGTTLDMIDIPLDETSFMY- 215 Query: 271 ISDTAGI 277 DT GI Sbjct: 216 --DTPGI 220 >gi|282919372|ref|ZP_06327107.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp. aureus C427] gi|282317182|gb|EFB47556.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp. aureus C427] Length = 366 Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust. Identities = 42/153 (27%), Positives = 68/153 (44%), Gaps = 25/153 (16%) Query: 216 IRNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270 IR + I+G +N GKS+L N L +KDV + PGTT D++ I LD ++ Sbjct: 157 IRENEDVYIVGTTNVGKSTLINKLIEASVGEKDVVTTSRFPGTTLDMIDIPLDETSFMY- 215 Query: 271 ISDTAGI------------RETDDIVEKEGIKRTFLEVENADLILL--LKEINSKKEISF 316 DT GI +E I+ K+ IK+ ++ A + L I+ +S Sbjct: 216 --DTPGIIQDHQMTHLVSEKELKIIMPKKEIKQRVYQLNEAQTLFFGGLARIDY---VSG 270 Query: 317 PKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGE 349 K F +++ T TE+ + L + G+ Sbjct: 271 GKRPLICFFSNDLNIHRTKTEKANDLWRNQLGD 303 >gi|261402862|ref|YP_003247086.1| ferrous iron transport protein B [Methanocaldococcus vulcanius M7] gi|261369855|gb|ACX72604.1| ferrous iron transport protein B [Methanocaldococcus vulcanius M7] Length = 677 Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 1/84 (1%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 Y+I ++G+ N GKS++FNAL ++V I + G T + +++ +G KI D G+ Sbjct: 3 YEIALIGNPNVGKSTIFNALTGENVYI-GNWAGVTVEKKVGEMEYDGKKFKIVDLPGVYS 61 Query: 280 TDDIVEKEGIKRTFLEVENADLIL 303 E + R +L EN DL++ Sbjct: 62 LTANSIDEIVARDYLINENPDLVV 85 >gi|21283277|ref|NP_646365.1| GTP-binding protein YqeH [Staphylococcus aureus subsp. aureus MW2] gi|49486431|ref|YP_043652.1| GTP-binding protein YqeH [Staphylococcus aureus subsp. aureus MSSA476] gi|57651989|ref|YP_186493.1| GTP-binding protein YqeH [Staphylococcus aureus subsp. aureus COL] gi|87160501|ref|YP_494251.1| GTP-binding protein YqeH [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195406|ref|YP_500210.1| GTP-binding protein YqeH [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151221711|ref|YP_001332533.1| GTP-binding protein YqeH [Staphylococcus aureus subsp. aureus str. Newman] gi|161509825|ref|YP_001575484.1| GTP-binding protein YqeH [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221141132|ref|ZP_03565625.1| GTP-binding protein YqeH [Staphylococcus aureus subsp. aureus str. JKD6009] gi|258450575|ref|ZP_05698637.1| GTP-binding protein YqeH [Staphylococcus aureus A5948] gi|262048596|ref|ZP_06021479.1| hypothetical protein SAD30_0992 [Staphylococcus aureus D30] gi|262051255|ref|ZP_06023479.1| hypothetical protein SA930_1686 [Staphylococcus aureus 930918-3] gi|282916867|ref|ZP_06324625.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp. aureus D139] gi|282920145|ref|ZP_06327870.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus A9765] gi|283770672|ref|ZP_06343564.1| GTP-binding protein YqeH [Staphylococcus aureus subsp. aureus H19] gi|284024655|ref|ZP_06379053.1| GTP-binding protein YqeH [Staphylococcus aureus subsp. aureus 132] gi|294848627|ref|ZP_06789373.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus A9754] gi|297207684|ref|ZP_06924119.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300911765|ref|ZP_07129208.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp. aureus TCH70] gi|21204717|dbj|BAB95413.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MW2] gi|49244874|emb|CAG43335.1| putative GTPase [Staphylococcus aureus subsp. aureus MSSA476] gi|57286175|gb|AAW38269.1| GTP-binding protein, putative [Staphylococcus aureus subsp. aureus COL] gi|87126475|gb|ABD20989.1| putative GTP-binding protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202964|gb|ABD30774.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150374511|dbj|BAF67771.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus str. Newman] gi|160368634|gb|ABX29605.1| GTP-binding protein [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257861733|gb|EEV84532.1| GTP-binding protein YqeH [Staphylococcus aureus A5948] gi|259160892|gb|EEW45912.1| hypothetical protein SA930_1686 [Staphylococcus aureus 930918-3] gi|259163243|gb|EEW47802.1| hypothetical protein SAD30_0992 [Staphylococcus aureus D30] gi|282319354|gb|EFB49706.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp. aureus D139] gi|282594493|gb|EFB99478.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus A9765] gi|283460819|gb|EFC07909.1| GTP-binding protein YqeH [Staphylococcus aureus subsp. aureus H19] gi|294824653|gb|EFG41076.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus A9754] gi|296887701|gb|EFH26599.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp. aureus ATCC 51811] gi|298694878|gb|ADI98100.1| GTP-binding protein [Staphylococcus aureus subsp. aureus ED133] gi|300886011|gb|EFK81213.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp. aureus TCH70] gi|302751426|gb|ADL65603.1| GTPase family protein [Staphylococcus aureus subsp. aureus str. JKD6008] gi|315198706|gb|EFU29034.1| GTP-binding protein YqeH [Staphylococcus aureus subsp. aureus CGS01] gi|320140517|gb|EFW32371.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp. aureus MRSA131] gi|320144055|gb|EFW35824.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp. aureus MRSA177] gi|323438562|gb|EGA96309.1| GTP-binding protein YqeH [Staphylococcus aureus O11] gi|323442801|gb|EGB00426.1| GTP-binding protein YqeH [Staphylococcus aureus O46] gi|329314272|gb|AEB88685.1| GTP-binding protein [Staphylococcus aureus subsp. aureus T0131] gi|329728433|gb|EGG64870.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp. aureus 21189] gi|329733209|gb|EGG69546.1| ribosome biogenesis GTPase YqeH [Staphylococcus aureus subsp. aureus 21193] Length = 366 Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 8/67 (11%) Query: 216 IRNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270 IR + I+G +N GKS+L N L +KDV + PGTT D++ I LD ++ Sbjct: 157 IRENEDVYIVGTTNVGKSTLINKLIEASVGEKDVVTTSRFPGTTLDMIDIPLDETSFMY- 215 Query: 271 ISDTAGI 277 DT GI Sbjct: 216 --DTPGI 220 >gi|311103379|ref|YP_003976232.1| GTPase [Achromobacter xylosoxidans A8] gi|310758068|gb|ADP13517.1| GTPase family protein 1 [Achromobacter xylosoxidans A8] Length = 462 Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 2/67 (2%) Query: 221 KIVILGHSNAGKSSLFNALAKKD-VAIVTDIPGTTRDVLTIDLDLEGYLV-KISDTAGIR 278 +I ++GH+N GK+SL L + V D PGTTR V L LEG V + DT G+ Sbjct: 7 RIALVGHTNTGKTSLLRTLTRDTRFGEVADSPGTTRHVEGARLRLEGRAVLEWFDTPGME 66 Query: 279 ETDDIVE 285 ++ ++E Sbjct: 67 DSISLLE 73 >gi|304384686|ref|ZP_07367032.1| ribosome biogenesis GTPase YqeH [Pediococcus acidilactici DSM 20284] gi|304328880|gb|EFL96100.1| ribosome biogenesis GTPase YqeH [Pediococcus acidilactici DSM 20284] Length = 369 Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 8/77 (10%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268 E +R+G + ++G +N GKS+L N+L KDV + PGTT D + I D Sbjct: 160 EQLRDGRDVYVVGVTNVGKSTLINSLIALRNGIKDVITTSRFPGTTLDRIEIPFDDHS-- 217 Query: 269 VKISDTAGIRETDDIVE 285 K+ DT GI D + Sbjct: 218 -KMIDTPGIVHNDQMAH 233 >gi|300919536|ref|ZP_07136034.1| conserved hypothetical protein [Escherichia coli MS 115-1] gi|300413430|gb|EFJ96740.1| conserved hypothetical protein [Escherichia coli MS 115-1] Length = 287 Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust. Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 5/86 (5%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-- 279 I I+G S AGKSSL NAL +V+ V+D+ TR+ L L + + + D G+ E Sbjct: 39 IGIMGKSGAGKSSLCNALFASEVSPVSDVAACTREPLRFRLQVGDCYMTLMDLPGVGESG 98 Query: 280 TDDIVEKEGIKRTFLEVENADLILLL 305 T D E + R ++ DL+L L Sbjct: 99 TRD-TEYAALYRE--QLSRLDLVLWL 121 >gi|296445792|ref|ZP_06887744.1| GTP-binding proten HflX [Methylosinus trichosporium OB3b] gi|296256620|gb|EFH03695.1| GTP-binding proten HflX [Methylosinus trichosporium OB3b] Length = 462 Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust. Identities = 46/184 (25%), Positives = 83/184 (45%), Gaps = 31/184 (16%) Query: 220 YKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGI 277 Y +V L G++NAGKS+LFN L K V + D+ T D + L G V +SDT G Sbjct: 217 YPVVALVGYTNAGKSTLFNRLTKAGV-LAEDMLFATLDPTLRQIRLPHGAKVLLSDTVGF 275 Query: 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF--IGTKSDLYSTY 335 + + T EV AD++L +++++ + + ++++ I +G + + Sbjct: 276 ISDLPTMLITAFRATLEEVMLADVVLHVRDVSHEDWEAQAEDVEAILAELGLSGEAGARI 335 Query: 336 TEEYDH--------------------------LISSFTGEGLEELINKIKSILSNKFKKL 369 E ++ L+S+ TGEGLE L+ +I+ L+ +L Sbjct: 336 LEVWNKIDALDPERLAALAVAAESAQGRERPSLVSALTGEGLEALLERIEQRLAEGRVEL 395 Query: 370 PFSI 373 ++ Sbjct: 396 EIAL 399 >gi|119386828|ref|YP_917883.1| small GTP-binding protein [Paracoccus denitrificans PD1222] gi|119377423|gb|ABL72187.1| GTP-binding protein HflX [Paracoccus denitrificans PD1222] Length = 435 Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust. Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 30/172 (17%) Query: 220 YKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGI 277 Y IV L G++NAGKS+LFN L +V + D T D L L G V +SDT G Sbjct: 210 YPIVALVGYTNAGKSTLFNRLTGAEV-LAQDQLFATLDPTMRQLTLPGGRRVILSDTVGF 268 Query: 278 RETDDIVEK--EGIKRTFLEVENADLILLLKEINSKK-------------EISFPKNIDF 322 D+ + + T EV ADLIL +++I+ + + +++ Sbjct: 269 --ISDLPHELVAAFRATLEEVLAADLILHVRDISHPETEEQAGDVGEILDSLGVEEDVPL 326 Query: 323 IFIGTKSDLYSTYT----EEYD------HLISSFTGEGLEELINKIKSILSN 364 I + K D S T + D IS+ +GEGL+ L+ I++ L+ Sbjct: 327 IEVWNKIDALSPETRAALQRTDARTQGVQAISALSGEGLDTLLAAIEARLAE 378 >gi|134291629|ref|YP_001115398.1| GTP-binding protein, HSR1-related [Burkholderia vietnamiensis G4] gi|134134818|gb|ABO59143.1| GTP-binding protein, HSR1-related protein [Burkholderia vietnamiensis G4] Length = 513 Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 10/84 (11%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 +++ G NAGKS+L N+L ++VA V D+P TT +V D D G++ + DT GI Sbjct: 43 VMLFGAYNAGKSTLINSLVGREVAKVGDVP-TTDEVHVHDWD--GHV--LLDTPGINAP- 96 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 +E E I + ++E DLI+ + Sbjct: 97 --IEHEAI--SLAQLERTDLIVFV 116 >gi|222153078|ref|YP_002562255.1| ribosomal biogenesis GTPase [Streptococcus uberis 0140J] gi|222113891|emb|CAR42061.1| putative GTPase protein [Streptococcus uberis 0140J] Length = 284 Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 7/65 (10%) Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DVLTIDLDLEGYLVKIS 272 I + + +I+G NAGKS+L N LA K +A+V + PG T+ L + DLE I Sbjct: 117 IQKQSLRTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQWLKSNKDLE-----IL 171 Query: 273 DTAGI 277 DT GI Sbjct: 172 DTPGI 176 >gi|126726836|ref|ZP_01742675.1| Putative GTP-binding protein [Rhodobacterales bacterium HTCC2150] gi|126703794|gb|EBA02888.1| Putative GTP-binding protein [Rhodobacterales bacterium HTCC2150] Length = 390 Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust. Identities = 66/271 (24%), Positives = 109/271 (40%), Gaps = 37/271 (13%) Query: 144 RLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLND-ILFLKND 202 ++ M +S + + L W TH+ + Q S + L++ I+ ++ Sbjct: 94 QVEMAALSYQKTRLVRAW----THLERQRGGLGFVGGPGETQIESDRRALDEAIIRIRRQ 149 Query: 203 ISSHISQGKLGEIIRNG--YKIVIL-GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT 259 + + +L R Y +V L G++NAGKS+ FN L V D+ T D Sbjct: 150 LEKTVKTRELHRAARKKVPYPVVALVGYTNAGKSTFFNHLTGAKV-FAKDMLFATLDPTM 208 Query: 260 IDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK 318 ++L G V +SDT G + T + +ADLIL +++I + S Sbjct: 209 RAVNLPNGLDVILSDTVGFISDLPTELVAAFRATLEDALSADLILHVRDIAHPETESQAG 268 Query: 319 NIDFIF-------------IGTKSDL--------YSTYTEEYDHL--ISSFTGEGLEELI 355 N+ I I K+DL + E + + +SS TG+G+E L+ Sbjct: 269 NVRTILSSLGIGHETPQIEIWNKTDLLNEEDAGRVAALAERKEDVFGVSSITGDGMEVLL 328 Query: 356 NKIKSIL----SNKFKKLPFSIPSHKRHLYH 382 IK+ L S LPFS + L+ Sbjct: 329 AAIKAKLDDERSTDILSLPFSAGQKRAWLFQ 359 >gi|319407032|emb|CBI80669.1| GTP-binding protein Era [Bartonella sp. 1-1C] Length = 300 Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust. Identities = 42/168 (25%), Positives = 79/168 (47%), Gaps = 22/168 (13%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R+G+ + ++G NAGKS+L N L V+IVT TTR ++ + + + + DT G Sbjct: 8 RSGF-VALIGVPNAGKSTLVNQLVGTKVSIVTHKVQTTRTLVRGIVIYDKTQIILIDTPG 66 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL--------KEINSKKEISFPKNIDFIFIGTK 328 + +E+ + + +NAD++L+L E+++ +I D I + K Sbjct: 67 VFRPHKRLERAMVSAAWGGAKNADILLVLIDAQSGLSDEVDAMLDILKSIEQDKILVLNK 126 Query: 329 SD---------LYSTYTEEYDHL----ISSFTGEGLEELINKIKSILS 363 D L + E + L IS+ G G ++L++ + +I+ Sbjct: 127 IDTVVKSSLLALTAKVNERVNFLQTFMISALNGSGCKDLLHYLSTIMQ 174 >gi|295103343|emb|CBL00887.1| GTPases [Faecalibacterium prausnitzii SL3/3] Length = 214 Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust. Identities = 47/176 (26%), Positives = 84/176 (47%), Gaps = 27/176 (15%) Query: 222 IVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 + ++G++N GKSSL NAL A+ D+ T P + + VL G V + DT G Sbjct: 4 VSLVGYTNVGKSSLMNALCGPSVAEADMLFATLDPTSRKLVLP-----SGMAVLLVDTVG 58 Query: 277 I--RETDDIVEKEGIKRTFLEVENADLILLLKEI-NSKKEISFP-----------KNIDF 322 R ++V E K T E +D+I+ + + + ++E +I Sbjct: 59 FVSRLPHNLV--EAFKSTLEEAAWSDVIVRVADAGDEQREEQLAVTDEVLDGLDCTDIPR 116 Query: 323 IFIGTKSDLYSTYTEEYDHLISSF-TGEGLEELINKIKSILSNKFKKLPFSIPSHK 377 + + K D +T + + D L++S TG GL++L+ K+ +LS++ + +P K Sbjct: 117 LTVYNKCDKPNTLSFDPDILLTSAKTGYGLDKLLQKLDEVLSDRVHTIRVLLPYDK 172 >gi|317051926|ref|YP_004113042.1| ferrous iron transport protein B [Desulfurispirillum indicum S5] gi|316947010|gb|ADU66486.1| ferrous iron transport protein B [Desulfurispirillum indicum S5] Length = 718 Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 5/80 (6%) Query: 226 GHSNAGKSSLFNAL--AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 G+ NAGKS+LFN + A++ VA + PG T D L +D + ++I D G Sbjct: 11 GNPNAGKSTLFNTITGARQHVA---NYPGVTVDTLEGVIDFQKNTLRIVDLPGTYSLSAY 67 Query: 284 VEKEGIKRTFLEVENADLIL 303 ++E + R FL + D +L Sbjct: 68 SQEELVARRFLVRQKPDAVL 87 >gi|260438846|ref|ZP_05792662.1| GTP-binding protein Era [Butyrivibrio crossotus DSM 2876] gi|292808685|gb|EFF67890.1| GTP-binding protein Era [Butyrivibrio crossotus DSM 2876] Length = 298 Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 2/87 (2%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDTAGIRET 280 + ++G N GKS+L N L + +AI ++ P TTR+ + T+ D G ++ + DT GI + Sbjct: 8 VALIGRPNVGKSTLMNYLIGQKIAITSNKPQTTRNRIQTVYTDERGQIIFL-DTPGIHKA 66 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE 307 + + + + +E+ D+IL L E Sbjct: 67 KNKLGEYMVTVAEKTLEDVDVILWLVE 93 >gi|223986364|ref|ZP_03636371.1| hypothetical protein HOLDEFILI_03682 [Holdemania filiformis DSM 12042] gi|223961655|gb|EEF66160.1| hypothetical protein HOLDEFILI_03682 [Holdemania filiformis DSM 12042] Length = 353 Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 4/67 (5%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 G +V++G +NAGKS+L NAL K + PGTT D +D+ + V + DT G+ Sbjct: 153 KGKDVVVMGMANAGKSTLLNALMDKPQLTSSRYPGTTLDFNPLDI----HGVTVYDTPGL 208 Query: 278 RETDDIV 284 + ++ Sbjct: 209 TPRNSML 215 >gi|163790555|ref|ZP_02184984.1| hypothetical protein CAT7_08240 [Carnobacterium sp. AT7] gi|159874158|gb|EDP68233.1| hypothetical protein CAT7_08240 [Carnobacterium sp. AT7] Length = 377 Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust. Identities = 38/146 (26%), Positives = 65/146 (44%), Gaps = 9/146 (6%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 R G + ++G +N GKS+L N + K +D+ + PGTT D + I LD +L+ Sbjct: 169 RKGRNVFVVGVTNVGKSTLINQIIKSTAGVQDLITTSQFPGTTLDRIEIPLDDGKFLI-- 226 Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDL 331 DT GI + G K L ++ ++ ++N + + F F ++ Sbjct: 227 -DTPGIIHRHQMAHVLGDKDLKLIAPKKEIKPIVYQLNEGQTLFFGGVARFDYLKGGRHS 285 Query: 332 YSTYTEEYDHLISSFTGEGLEELINK 357 ++ +T D LI E +EL K Sbjct: 286 FTCFTSN-DLLIHRTKLEKADELYQK 310 >gi|160933522|ref|ZP_02080910.1| hypothetical protein CLOLEP_02368 [Clostridium leptum DSM 753] gi|156867399|gb|EDO60771.1| hypothetical protein CLOLEP_02368 [Clostridium leptum DSM 753] Length = 289 Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust. Identities = 38/114 (33%), Positives = 50/114 (43%), Gaps = 19/114 (16%) Query: 198 FLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-- 255 LK+ I +G + IR ++I+G N GKSS N +AK++ A V D PG TR Sbjct: 107 LLKDRIIQWEQKGMVNRTIR----VMIVGIPNVGKSSFINRMAKQNRAKVEDRPGVTRGN 162 Query: 256 DVLTID-----LDLEGYLVKISDTAGIRE--------TDDIVEKEGIKRTFLEV 296 TI LD G L D + E D IV+ E + LEV Sbjct: 163 QWFTIGKAFDLLDTPGVLWPKFDDPNVGEKLAFTGAVKDQIVDTEQLASRLLEV 216 >gi|323466383|gb|ADX70070.1| GTP-binding protein era-like protein [Lactobacillus helveticus H10] Length = 301 Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust. Identities = 42/161 (26%), Positives = 71/161 (44%), Gaps = 20/161 (12%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKS+L N L + VAI ++ P TTR+ ++ + V DT GI + Sbjct: 11 VALVGRPNVGKSTLMNYLVGQKVAITSNKPQTTRNRISGIYTSDKMQVVFVDTPGIFKPH 70 Query: 282 DIVEKEGIKRTFLEVENADLILLLKE-----------INSKKEISFP-----KNIDFIFI 325 ++ K + + + DL+L + E N KE+ P +D I Sbjct: 71 SKLDDYMDKASLSSLNDVDLVLFMVESEEIGKGDQYIANLLKEVKVPVFLVINKVDQIHP 130 Query: 326 GTKSDLYSTY--TEEYDHL--ISSFTGEGLEELINKIKSIL 362 + +Y E + + IS+ G G+E+L+N I L Sbjct: 131 NKLLPIMDSYHKLEGFKEILPISATQGIGIEDLLNTINKYL 171 >gi|294784965|ref|ZP_06750253.1| GTP-binding protein Era [Fusobacterium sp. 3_1_27] gi|294486679|gb|EFG34041.1| GTP-binding protein Era [Fusobacterium sp. 3_1_27] Length = 298 Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 43/84 (51%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I ++G N GKS+L N L VAIV+D GTTRD + L+ + DT GI + Sbjct: 6 IAVVGRPNVGKSTLINKLVSGKVAIVSDKAGTTRDNIKGILNFKDNQYIFIDTPGIHKPQ 65 Query: 282 DIVEKEGIKRTFLEVENADLILLL 305 ++ + +++ D+IL L Sbjct: 66 HLLGEYMTNIAVKILKDVDIILFL 89 >gi|298346303|ref|YP_003718990.1| GTP-binding protein Era family protein [Mobiluncus curtisii ATCC 43063] gi|298236364|gb|ADI67496.1| GTP-binding protein Era family protein [Mobiluncus curtisii ATCC 43063] Length = 350 Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 1/64 (1%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273 E R G+ VI G N GKS+L NA+ + +AI +D P TTR V + + + + D Sbjct: 52 EDFRAGFAAVI-GRPNVGKSTLINAMVGRKIAITSDRPETTRRVARGIVHRPDFQLILVD 110 Query: 274 TAGI 277 T GI Sbjct: 111 TPGI 114 >gi|227498680|ref|ZP_03928824.1| conserved hypothetical protein [Acidaminococcus sp. D21] gi|226904136|gb|EEH90054.1| conserved hypothetical protein [Acidaminococcus sp. D21] Length = 717 Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 42/89 (47%), Gaps = 12/89 (13%) Query: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK-----ISDT 274 YKI + G+ N GK++LFNAL + V + PG T + EG L+ I D Sbjct: 3 YKIALAGNPNTGKTTLFNALTGSN-QFVGNWPGVTVE------KKEGTLIGHPEILIQDL 55 Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLIL 303 GI +E + RT+L E D IL Sbjct: 56 PGIYSLSPYTLEEVVSRTYLVKERPDAIL 84 >gi|197287292|ref|YP_002153164.1| ATP/GTP-binding protein [Proteus mirabilis HI4320] gi|194684779|emb|CAR46827.1| putative ATP/GTP-binding protein [Proteus mirabilis HI4320] Length = 287 Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust. Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 1/87 (1%) Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253 N LFL + + L ++I I ++G + AGKSSL NAL + ++ V+D+ G Sbjct: 6 NHFLFLPKG-AKDVFLSHLNKLINYSPTIGLMGKTGAGKSSLINALFQSTLSPVSDVSGC 64 Query: 254 TRDVLTIDLDLEGYLVKISDTAGIRET 280 TR + + + + D G+ E+ Sbjct: 65 TRQAQRFSMVMNNHTLTFVDLPGVGES 91 >gi|160882885|ref|ZP_02063888.1| hypothetical protein BACOVA_00847 [Bacteroides ovatus ATCC 8483] gi|260173751|ref|ZP_05760163.1| putative ATP GTP-binding protein [Bacteroides sp. D2] gi|315922015|ref|ZP_07918255.1| conserved hypothetical protein [Bacteroides sp. D2] gi|156111749|gb|EDO13494.1| hypothetical protein BACOVA_00847 [Bacteroides ovatus ATCC 8483] gi|313695890|gb|EFS32725.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 362 Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust. Identities = 40/117 (34%), Positives = 56/117 (47%), Gaps = 18/117 (15%) Query: 173 EADLDF---SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSN 229 ++DLDF S EE + + S N I I + +L E I G +V +G S Sbjct: 160 KSDLDFDRQSVEEQINHIS-----NQIPVFFTSIHQPQTILRLRESISEGETVVFVGSSG 214 Query: 230 AGKSSLFNALAKKDVAIVTDI---PGTTRDVLT----IDLDLEGYLVKISDTAGIRE 279 GKSSL NAL +K V + +DI G R T + ++ G L+ DT G+RE Sbjct: 215 VGKSSLVNALCEKSVLLTSDISLSTGKGRHTSTRREMVLMNDSGVLI---DTPGVRE 268 >gi|78187585|ref|YP_375628.1| GTP-binding protein Era [Chlorobium luteolum DSM 273] gi|78167487|gb|ABB24585.1| GTP-binding protein Era [Chlorobium luteolum DSM 273] Length = 305 Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 45/89 (50%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 I+G NAGKS+L NAL ++IVT P TTR +T + V DT GI E Sbjct: 13 IIGPPNAGKSTLMNALLDCKLSIVTPKPQTTRKRITGIYHDKQMQVVFLDTPGIMEPMQK 72 Query: 284 VEKEGIKRTFLEVENADLILLLKEINSKK 312 + + + T + +AD+I+ + K+ Sbjct: 73 LHEAMLLATRDTLRDADVIIAMLPFRKKE 101 >gi|332296079|ref|YP_004438002.1| GTP-binding protein Era-like-protein [Thermodesulfobium narugense DSM 14796] gi|332179182|gb|AEE14871.1| GTP-binding protein Era-like-protein [Thermodesulfobium narugense DSM 14796] Length = 287 Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust. Identities = 23/88 (26%), Positives = 50/88 (56%), Gaps = 1/88 (1%) Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 +++G+ ++ +G +N GK+SL N L + + IV+D P TTR + E Y + D+ Sbjct: 1 MKSGF-VIFVGKTNVGKTSLINCLLGEKIGIVSDKPQTTRFRTSFIESTEEYQIIYVDSP 59 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLIL 303 G+ +++ + K+ F +++ ++I+ Sbjct: 60 GVHNVKNLLHERLNKKIFDSLDSFEIIV 87 >gi|259090123|pdb|3A1S|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima Feob Iron Iransporter In Gdp Form I gi|259090124|pdb|3A1S|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima Feob Iron Iransporter In Gdp Form I Length = 258 Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust. Identities = 52/160 (32%), Positives = 67/160 (41%), Gaps = 27/160 (16%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ + G N GK+SLFNAL V + PG T + +GY + + D G Sbjct: 7 KVALAGCPNVGKTSLFNALTGTK-QYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSL 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE-INS--------------KKEISFPKNIDFI-F 324 E I R +L +ADL++L+ + +N KK I ID Sbjct: 66 GYSSIDEKIARDYLLKGDADLVILVADSVNPEQSLYLLLEILEXEKKVILAXTAIDEAKK 125 Query: 325 IGTKSDLYSTYTEEYDHL------ISSFTGEGLEELINKI 358 G K D Y E HL SS TGEGLEEL KI Sbjct: 126 TGXKIDRY----ELQKHLGIPVVFTSSVTGEGLEELKEKI 161 >gi|225181430|ref|ZP_03734873.1| ferrous iron transport protein B [Dethiobacter alkaliphilus AHT 1] gi|225167828|gb|EEG76636.1| ferrous iron transport protein B [Dethiobacter alkaliphilus AHT 1] Length = 633 Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 2/77 (2%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + +LG+ N GKS LF L V V++ PGTT ++ +L G + I DT G+ Sbjct: 4 VALLGNPNVGKSVLFYHLTGNYVT-VSNYPGTTVEISRGLANLYGKTLMIYDTPGMYSLS 62 Query: 282 DIVEKEGIKRTFLEVEN 298 + E+E + R L +EN Sbjct: 63 PVTEEEAVTRRLL-MEN 78 >gi|172056862|ref|YP_001813322.1| GTP-binding protein Era [Exiguobacterium sibiricum 255-15] gi|171989383|gb|ACB60305.1| GTP-binding protein Era [Exiguobacterium sibiricum 255-15] Length = 302 Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust. Identities = 45/178 (25%), Positives = 81/178 (45%), Gaps = 34/178 (19%) Query: 215 IIRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR----------DVLTID 261 + + G+K + I+G N GKS+ N + + +AI++D P TTR DV TI Sbjct: 1 MFKEGFKSGFVSIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKIQGVYTTDDVQTIF 60 Query: 262 LDLEG----------YLVKISDTAGIRETD------DIVEKEGIKRTFLEVENADLILLL 305 +D G +++K++ T +RE D ++ E +G F+ + DL + Sbjct: 61 IDTPGIHKPKHKLGDFMMKVA-TNALREVDAILFMINVTEPKGKGDEFIIEKLKDLDTPI 119 Query: 306 KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363 + +K ++ P +I I +++L IS+ G +E L+ +I IL Sbjct: 120 ILVMNKVDLIHPNDIPPIIESYQNELNFAAVVP----ISALQGNNVEPLLQEISKILP 173 >gi|323493947|ref|ZP_08099064.1| GTPase YlqF [Vibrio brasiliensis LMG 20546] gi|323311888|gb|EGA65035.1| GTPase YlqF [Vibrio brasiliensis LMG 20546] Length = 311 Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 56/104 (53%), Gaps = 13/104 (12%) Query: 178 FSEEEDVQNF----SSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233 F +E +V+ S+ + +N IL L ++ H + ++G+ IR +I+G N GKS Sbjct: 75 FEKENNVKAMAITTSNVQEVNKILELCRKLAPH--REEIGKNIRT----MIMGIPNVGKS 128 Query: 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 ++ N LA + VA+ + P TR I+L G + +SDT GI Sbjct: 129 TIINTLAGRTVAVTGNQPAVTRRQQRINLQ-NGIV--LSDTPGI 169 >gi|259090125|pdb|3A1T|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima Feob Iron Iransporter In Gdp Form Ii gi|259090126|pdb|3A1U|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima Feob Iron Iransporter In Gmppnp Form gi|259090127|pdb|3A1U|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima Feob Iron Iransporter In Gmppnp Form gi|259090128|pdb|3A1V|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima Feob Iron Iransporter In Apo Form gi|259090129|pdb|3A1V|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima Feob Iron Iransporter In Apo Form Length = 258 Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust. Identities = 48/160 (30%), Positives = 67/160 (41%), Gaps = 27/160 (16%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K+ + G N GK+SLFNAL V + PG T + +GY + + D G Sbjct: 7 KVALAGCPNVGKTSLFNALTGTK-QYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSL 65 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKE-INSKKE-------ISFPKNIDFIF-------- 324 E I R +L +ADL++L+ + +N ++ + K + Sbjct: 66 GYSSIDEKIARDYLLKGDADLVILVADSVNPEQSLYLLLEILEMEKKVILAMTAIDEAKK 125 Query: 325 IGTKSDLYSTYTEEYDHL------ISSFTGEGLEELINKI 358 G K D Y E HL SS TGEGLEEL KI Sbjct: 126 TGMKIDRY----ELQKHLGIPVVFTSSVTGEGLEELKEKI 161 >gi|307150189|ref|YP_003885573.1| small GTP-binding protein [Cyanothece sp. PCC 7822] gi|306980417|gb|ADN12298.1| small GTP-binding protein [Cyanothece sp. PCC 7822] Length = 530 Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust. Identities = 66/259 (25%), Positives = 116/259 (44%), Gaps = 48/259 (18%) Query: 181 EEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 + VQ K +L +I +++++G+L ++V+ G +AGK+SL NAL Sbjct: 102 KRQVQQIQDKVSQKALLSRSQEIEANLARGEL--------RVVVFGTGSAGKTSLVNALI 153 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYL--VKISDTAGIRETDDI-VEKEGIKRTFLEVE 297 + V V GTT+ T L L+G + I+DT GI E ++E + R Sbjct: 154 GEMVGNVEATMGTTQIGETYRLKLKGISREILITDTPGILEAGIAGTQREQLARQL--AT 211 Query: 298 NADLILLLKEINSKKEISFPKNI------DFIFIGTKSDLYSTYTEEYDHLISSFTGEGL 351 ADL+L + + + ++ P + + I K+DLYS +E +I + + + Sbjct: 212 EADLLLFVIDNDLRQSEYEPLRMLVGIGKRSLLIFNKTDLYS---DEDQEVILNQLKQRV 268 Query: 352 EELINK--IKSILSNK----------FKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKD 399 ++ IN I ++ +N + P IP KR +A++ + Sbjct: 269 QDFINAADIVALAANPQPVQLENGELIQPEPDIIPLIKR-------------LAAILRAE 315 Query: 400 CGLDIIAENLRLASVSLGK 418 G D+IA+N+ L S LG+ Sbjct: 316 -GEDLIADNILLQSQRLGE 333 >gi|41615156|ref|NP_963654.1| hypothetical protein NEQ366 [Nanoarchaeum equitans Kin4-M] gi|40068880|gb|AAR39215.1| NEQ366 [Nanoarchaeum equitans Kin4-M] Length = 228 Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust. Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 7/76 (9%) Query: 206 HISQGKLGEIIRNGYK----IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID 261 + + K+ E+ +N K + + G N GKSSL NAL + VA IPG T+ + I Sbjct: 63 RVLRNKIKEVAKNINKDKIIVCVAGFPNTGKSSLINALRGRHVAGTAPIPGKTKGIQLIK 122 Query: 262 LDLEGYLVKISDTAGI 277 L + YL DT GI Sbjct: 123 LSNKIYL---KDTPGI 135 >gi|289642689|ref|ZP_06474829.1| GTP-binding protein Era [Frankia symbiont of Datisca glomerata] gi|289507519|gb|EFD28478.1| GTP-binding protein Era [Frankia symbiont of Datisca glomerata] Length = 309 Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust. Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 11/136 (8%) Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267 + + G R+G+ + G NAGKS+L NAL VAI + P TTR + + + Sbjct: 3 ASAEAGAPFRSGFACFV-GRPNAGKSTLTNALVGSKVAITSGRPQTTRHAVRGIVHRDDA 61 Query: 268 LVKISDTAGIRETDDIVEK---EGIKRTFLEVENADLILLLKEINSKKE-------ISFP 317 + + DT G+ ++ + + ++ T EV+ + E + P Sbjct: 62 QLVLVDTPGLHRPRTLLGQRLNDVVRATLSEVDVVAFCVPANEAVGPGDRFIAGELARLP 121 Query: 318 KNIDFIFIGTKSDLYS 333 K + + TKSDL S Sbjct: 122 KRTPLVAVVTKSDLVS 137 >gi|37528399|ref|NP_931744.1| putative GTPase HflX [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787837|emb|CAE16952.1| GTP-binding protein [Photorhabdus luminescens subsp. laumondii TTO1] Length = 426 Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust. Identities = 56/215 (26%), Positives = 92/215 (42%), Gaps = 31/215 (14%) Query: 188 SSKEVLND-ILFLKNDISSHISQGKLGEIIRNGYKIV---ILGHSNAGKSSLFNALAKKD 243 + + +L D I + N +S Q + G RN I ++G++NAGKSSLFN + + Sbjct: 162 TDRRLLRDKIRQILNRLSRVEKQREQGRQARNKADIPTVSLVGYTNAGKSSLFNRMTAAE 221 Query: 244 VAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAG-IRE-TDDIVEKEGIKRTFLEVENAD 300 V + T L ID++ G +V ++DT G IR D+V K T E A Sbjct: 222 VYAADQLFATLDPTLRRIDVNDVGTVV-LADTVGFIRHLPHDLV--AAFKATLQETRQAT 278 Query: 301 LILLLKE------------INSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDH------- 341 L+L + + ++S E I + + K D+ ++T D Sbjct: 279 LLLHIVDAADSRIDENIAAVDSVLEEIEAHEIPVLLVMNKIDMLDSFTPRIDRNEDNLPV 338 Query: 342 --LISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374 +S+ TGEG+ L+ + LS + +P Sbjct: 339 RVWLSAQTGEGIPLLLQALTERLSGEIAHYELRLP 373 >gi|315658402|ref|ZP_07911274.1| GTP-binding protein HflX [Staphylococcus lugdunensis M23590] gi|315496731|gb|EFU85054.1| GTP-binding protein HflX [Staphylococcus lugdunensis M23590] Length = 415 Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 10/89 (11%) Query: 220 YKIVILGHSNAGKSSLFNALA-----KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274 ++I ++G++NAGKSS FN L+ ++++ T P T + I L+ EG+ V I+DT Sbjct: 209 FQIALVGYTNAGKSSWFNVLSGESTYEQNLLFATLDPKTRQ----IQLN-EGFNVIITDT 263 Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLIL 303 G + K T E +NAD++L Sbjct: 264 VGFIQKLPTTLVAAFKSTLEEAKNADILL 292 >gi|289550899|ref|YP_003471803.1| GTP-binding protein HflX [Staphylococcus lugdunensis HKU09-01] gi|289180431|gb|ADC87676.1| GTP-binding protein HflX [Staphylococcus lugdunensis HKU09-01] Length = 412 Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 10/89 (11%) Query: 220 YKIVILGHSNAGKSSLFNALA-----KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274 ++I ++G++NAGKSS FN L+ ++++ T P T + I L+ EG+ V I+DT Sbjct: 206 FQIALVGYTNAGKSSWFNVLSGESTYEQNLLFATLDPKTRQ----IQLN-EGFNVIITDT 260 Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLIL 303 G + K T E +NAD++L Sbjct: 261 VGFIQKLPTTLVAAFKSTLEEAKNADILL 289 >gi|237722944|ref|ZP_04553425.1| ribosome-associated GTPase [Bacteroides sp. 2_2_4] gi|229447466|gb|EEO53257.1| ribosome-associated GTPase [Bacteroides sp. 2_2_4] Length = 362 Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust. Identities = 40/117 (34%), Positives = 56/117 (47%), Gaps = 18/117 (15%) Query: 173 EADLDF---SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSN 229 ++DLDF S EE + + S N I I + +L E I G +V +G S Sbjct: 160 KSDLDFDRQSVEEQINHIS-----NQIPVFFTSIHQPQTILRLRESISEGETVVFVGSSG 214 Query: 230 AGKSSLFNALAKKDVAIVTDI---PGTTRDVLT----IDLDLEGYLVKISDTAGIRE 279 GKSSL NAL +K V + +DI G R T + ++ G L+ DT G+RE Sbjct: 215 VGKSSLVNALCEKSVLLTSDISLSTGKGRHTSTRREMVLMNDSGVLI---DTPGVRE 268 >gi|261345214|ref|ZP_05972858.1| GTP-binding protein HflX [Providencia rustigianii DSM 4541] gi|282566909|gb|EFB72444.1| GTP-binding protein HflX [Providencia rustigianii DSM 4541] Length = 426 Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust. Identities = 57/236 (24%), Positives = 98/236 (41%), Gaps = 35/236 (14%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAG-IRE 279 + ++G++NAGKSSLFN + DV + T L ID++ G +V ++DT G IR Sbjct: 200 VSLVGYTNAGKSSLFNRMTSADVYAADQLFATLDPTLRRIDVNDVGTVV-LADTVGFIRH 258 Query: 280 -TDDIVEKEGIKRTFLEVENADLILL------------LKEINSKKEISFPKNIDFIFIG 326 D+V K T E A L+L ++ + S E I + + Sbjct: 259 LPHDLV--AAFKATLQETREATLLLHVIDAADNRLDENIQAVESVLEEIEANEIPTLLVM 316 Query: 327 TKSDLYSTYTEEYDH---------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377 K D+ + D +S+ TGEG+ L+ + LS + +P ++ Sbjct: 317 NKVDMLEDFVPRIDRDEDNKPARVWVSAQTGEGIPLLLQALTERLSGEIAHFELRLPPNE 376 Query: 378 RHLYHLSQTVRYLEMASLNEKDCGLD-IIAENLRLASVSLGKITGCVDVEQLLDII 432 L R+ ++ S+ + D I +R+ V ++ C +QL D + Sbjct: 377 GRLRS-----RFYQLQSIEREWQEEDGTIGLEVRMPMVDWRRL--CKQEQQLPDYV 425 >gi|317058880|ref|ZP_07923365.1| GTP-binding protein [Fusobacterium sp. 3_1_5R] gi|313684556|gb|EFS21391.1| GTP-binding protein [Fusobacterium sp. 3_1_5R] Length = 362 Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust. Identities = 29/99 (29%), Positives = 55/99 (55%), Gaps = 6/99 (6%) Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255 I+ KN+ + K+ NG ++++LG +N GKSS+ N L K+ V+ PGTT Sbjct: 136 IVSCKNNYGMNGVLRKIQHFYPNGVEVLVLGVTNVGKSSVINRLLGKNRVTVSKYPGTT- 194 Query: 256 DVLTIDLDLEGYLVKISDTAGI----RETDDIVEKEGIK 290 +L+ ++ G + + DT G+ R +D ++E++ ++ Sbjct: 195 -LLSTMNEISGTNLCLIDTPGLIPEGRFSDLMIEEDQLR 232 >gi|307710602|ref|ZP_07647036.1| conserved hypothetical protein [Streptococcus mitis SK564] gi|307618647|gb|EFN97789.1| conserved hypothetical protein [Streptococcus mitis SK564] Length = 368 Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 70/165 (42%), Gaps = 41/165 (24%) Query: 160 QWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG 219 QW+ + H D+ + ++ Q + KEV++ I E R G Sbjct: 123 QWLMERAHEEGLRPVDVVLTSAQNKQ--AIKEVIDKI-----------------EHYRKG 163 Query: 220 YKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274 + ++G +N GKS+L NA+ + ++V + PGTT D + I LD Y I DT Sbjct: 164 RDVYVVGVTNVGKSTLINAIIQEITGDQNVITTSRFPGTTLDKIEIPLDDGSY---IYDT 220 Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319 GI + +L +N LK ++ KKEI PK Sbjct: 221 PGIIHRHQMAH-------YLTAKN------LKYVSPKKEIK-PKT 251 >gi|206576585|ref|YP_002240728.1| GTPase family protein [Klebsiella pneumoniae 342] gi|206565643|gb|ACI07419.1| GTPase family protein [Klebsiella pneumoniae 342] Length = 291 Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 34/58 (58%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 I I+G S AGKSSL N L + +V+ V+D+ TRDVL L + + I D G+ E Sbjct: 39 IGIMGKSGAGKSSLCNELFRGEVSPVSDVNACTRDVLRFRLRSGRHSLVIVDLPGVGE 96 >gi|170744646|ref|YP_001773301.1| GTP-binding protein Era [Methylobacterium sp. 4-46] gi|168198920|gb|ACA20867.1| GTP-binding protein Era [Methylobacterium sp. 4-46] Length = 315 Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust. Identities = 47/185 (25%), Positives = 83/185 (44%), Gaps = 32/185 (17%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTA 275 R G+ + ++G NAGKS+L N+L V+IV+ TTR L + +EG + DT Sbjct: 21 RAGF-VALIGVPNAGKSTLLNSLVGSKVSIVSRKVQTTR-ALVRGIAIEGAAQIVFVDTP 78 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK--------------EISFPK--- 318 GI +++ + + +AD + LL ++++K E+ PK Sbjct: 79 GIFAPKRRLDRAMVTSAWSGAADADAVCLL--VDARKGVDPEVEAVLGRLPELRRPKILV 136 Query: 319 --NIDFIFIGTKSDLYSTYTEE--YDH--LISSFTGEGLEELINKIKSILSNKFKKLPFS 372 ID I DL + +DH ++S+ TG+G+ +L + +L+ P+ Sbjct: 137 LNKIDVIARERLLDLAAALNGRLPFDHTFMVSALTGDGVADL----RRVLAGLMPPGPWL 192 Query: 373 IPSHK 377 P + Sbjct: 193 YPEDQ 197 >gi|148553135|ref|YP_001260717.1| GTP-binding protein Era [Sphingomonas wittichii RW1] gi|148498325|gb|ABQ66579.1| GTP-binding protein Era [Sphingomonas wittichii RW1] Length = 297 Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust. Identities = 47/185 (25%), Positives = 86/185 (46%), Gaps = 32/185 (17%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTA 275 R G+ + ++G NAGKS+L NAL + VAIV+ TTR L I + + G + + DT Sbjct: 4 RCGF-VAVVGAPNAGKSTLVNALVGQKVAIVSPKAQTTRTRL-IGVAIAGESQILLVDTP 61 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF--------------PKNI- 320 GI +++ + + ++ADLI + I++K I+ PK + Sbjct: 62 GIFAPRRRLDRAMVAAAWGGAQDADLIAFV--IDAKTGITHRIGELLDTLAQRREPKLVV 119 Query: 321 -DFIFIGTKSD-------LYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFS 372 + + I +K L E ++S+ TG+G+ +L + L+++ + P+ Sbjct: 120 LNKVDICSKESLLELAVRLQEKLAPEAIFMVSAATGDGVADL----RQTLADRVPEGPWH 175 Query: 373 IPSHK 377 P + Sbjct: 176 FPEEQ 180 >gi|119716151|ref|YP_923116.1| GTP-binding protein Era [Nocardioides sp. JS614] gi|226741224|sp|A1SHZ4|ERA_NOCSJ RecName: Full=GTPase Era gi|119536812|gb|ABL81429.1| GTP-binding protein Era [Nocardioides sp. JS614] Length = 313 Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust. Identities = 38/129 (29%), Positives = 62/129 (48%), Gaps = 16/129 (12%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R+G+ + +G NAGKS+L NAL V I +D P TTR V+ + + + + DT G Sbjct: 13 RSGF-VSFVGRPNAGKSTLTNALVGSKVVITSDKPQTTRTVVRGIVHRDDAQLILVDTPG 71 Query: 277 IRETDDIVEK---EGIKRTFLEVENADLILLLKEINSK---------KEISFPKNIDFIF 324 + ++ + + +K T EV D++ + N K E++ K + Sbjct: 72 LHRPRTLLGERLNDLVKTTLAEV---DVVAVCLPANEKVGPGDRFIVNEMAKIKRTTKVA 128 Query: 325 IGTKSDLYS 333 I TK+DL S Sbjct: 129 IATKTDLAS 137 >gi|327473478|gb|EGF18898.1| GTP-binding protein [Streptococcus sanguinis SK408] Length = 368 Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust. Identities = 35/111 (31%), Positives = 54/111 (48%), Gaps = 22/111 (19%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268 E R G + ++G +N GKS+L NA+ + KD+ + PGTT D + I L Sbjct: 158 EYCRKGRDVYVVGVTNVGKSTLINAIIQEITGDKDIITTSHFPGTTLDKIEIPL------ 211 Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319 +D + I +T I+ + + +L +N LK I+ KKEI PK Sbjct: 212 ---ADGSHIYDTPGIIHRHQMAH-YLTAKN------LKYISPKKEIK-PKT 251 >gi|295424887|ref|ZP_06817602.1| GTP-binding protein Era [Lactobacillus amylolyticus DSM 11664] gi|295065453|gb|EFG56346.1| GTP-binding protein Era [Lactobacillus amylolyticus DSM 11664] Length = 302 Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 46/86 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+L N L + VAI ++ P TTR+ ++ + V DT GI + Sbjct: 12 VAIVGRPNVGKSTLMNRLVGEKVAITSNKPQTTRNRISGIYTSDDMQVVFVDTPGIFKPH 71 Query: 282 DIVEKEGIKRTFLEVENADLILLLKE 307 +++ K ++ + + DL++ + E Sbjct: 72 SKLDEYMDKASYSSLNDVDLVMFMVE 97 >gi|159490690|ref|XP_001703306.1| hypothetical protein CHLREDRAFT_114154 [Chlamydomonas reinhardtii] gi|158280230|gb|EDP05988.1| predicted protein [Chlamydomonas reinhardtii] Length = 450 Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 31/56 (55%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 K+ I+G NAGKS+L NAL + A+ PG TRD + V++ DTAG Sbjct: 193 KLAIMGLPNAGKSTLLNALLGEQRAVTGPEPGLTRDSVRAAWTYGDTAVELVDTAG 248 Score = 40.4 bits (93), Expect = 0.61, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 2/58 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGT--TRDVLTIDLDLEGYLVKISDTAGI 277 + ++G N GKS+LFN L ++ A+V D P + TRD L + +++DT+G+ Sbjct: 1 VALVGRPNVGKSALFNRLIRRRQALVYDTPASHVTRDYQEGRAQLGDLVFRVADTSGL 58 >gi|78188547|ref|YP_378885.1| GTP-binding protein Era [Chlorobium chlorochromatii CaD3] gi|78170746|gb|ABB27842.1| GTP-binding protein Era [Chlorobium chlorochromatii CaD3] Length = 305 Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust. Identities = 28/83 (33%), Positives = 44/83 (53%) Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDD 282 +I+G NAGKS+L NAL ++IVT P TTR +T + E + DT GI + Sbjct: 12 MIIGQPNAGKSTLLNALLDFKLSIVTPKPQTTRKKITGIYNSERCQIIFLDTPGILKPRQ 71 Query: 283 IVEKEGIKRTFLEVENADLILLL 305 + + + V +AD+++ L Sbjct: 72 KLHESMLGVVRSTVTDADVLIAL 94 >gi|325688137|gb|EGD30156.1| GTP-binding protein [Streptococcus sanguinis SK72] Length = 368 Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust. Identities = 43/165 (26%), Positives = 72/165 (43%), Gaps = 41/165 (24%) Query: 160 QWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNG 219 QW+ + H D+ + ++ Q + KE+++ I E R G Sbjct: 123 QWLTERAHEEGLRPVDVVLTSAQNKQ--AIKELIDKI-----------------EHCRKG 163 Query: 220 YKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274 + ++G +N GKS+L NA+ + KD+ + PGTT D + I L +D Sbjct: 164 RDVYVVGVTNVGKSTLINAIIQEITGDKDIITTSRFPGTTLDKIEIPL---------ADG 214 Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319 + I +T I+ + + +L +N LK I+ KKEI PK Sbjct: 215 SHIYDTPGIIHRHQMAH-YLSAKN------LKYISPKKEIK-PKT 251 >gi|315654892|ref|ZP_07907797.1| GTP-binding protein Era [Mobiluncus curtisii ATCC 51333] gi|315490853|gb|EFU80473.1| GTP-binding protein Era [Mobiluncus curtisii ATCC 51333] Length = 350 Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 1/64 (1%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273 E R G+ VI G N GKS+L NA+ + +AI +D P TTR V + + + + D Sbjct: 52 EGFRAGFAAVI-GRPNVGKSTLINAMVGRKIAITSDRPETTRRVARGIVHRPDFQLILVD 110 Query: 274 TAGI 277 T GI Sbjct: 111 TPGI 114 >gi|295114611|emb|CBL35458.1| iron-only hydrogenase maturation protein HydF [butyrate-producing bacterium SM4/1] Length = 432 Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust. Identities = 27/58 (46%), Positives = 35/58 (60%), Gaps = 3/58 (5%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL--EGYLVKISDTAGI 277 I G NAGKSSL NA +D+A+V+D+ GTT D + ++L G V I DT GI Sbjct: 14 ISFFGCRNAGKSSLLNAFTGQDLAVVSDVKGTTTDPVKKSMELLPLGPAV-IIDTPGI 70 >gi|118580146|ref|YP_901396.1| GTP-binding protein Era [Pelobacter propionicus DSM 2379] gi|259645964|sp|A1APR8|ERA_PELPD RecName: Full=GTPase Era gi|118502856|gb|ABK99338.1| GTP-binding protein Era [Pelobacter propionicus DSM 2379] Length = 296 Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust. Identities = 42/192 (21%), Positives = 81/192 (42%), Gaps = 21/192 (10%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R GY + I+G N GKS+L N + + +AI +D P TTR+ + ++ + DT G Sbjct: 7 RFGY-VSIVGRPNVGKSTLLNRIIGEKIAITSDKPQTTRNRIQGIHNIANGQIVFIDTPG 65 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNI------DFIFIGTKSD 330 I + K + + DL+LL+ + + +++ + + K D Sbjct: 66 IHACHSRLNKGMVDAALAALRGVDLLLLVVDAGGAIDDRLVRDVLGGTGTPVMLVLNKVD 125 Query: 331 L----------YSTYTEEYDHL----ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSH 376 L + +++ Y IS+ +GEG++ LI + L P I + Sbjct: 126 LLADKRVLLERMAAWSQLYPFREILPISAGSGEGVDGLIETVCGYLPEGQPLFPDDILTD 185 Query: 377 KRHLYHLSQTVR 388 + +++ +R Sbjct: 186 LPERFIVAEMIR 197 >gi|227833308|ref|YP_002835015.1| putative GTP-binding protein [Corynebacterium aurimucosum ATCC 700975] gi|262184292|ref|ZP_06043713.1| putative GTP-binding protein [Corynebacterium aurimucosum ATCC 700975] gi|227454324|gb|ACP33077.1| putative GTP-binding protein [Corynebacterium aurimucosum ATCC 700975] Length = 492 Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust. Identities = 57/200 (28%), Positives = 84/200 (42%), Gaps = 30/200 (15%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRE 279 +I I G++NAGKSSL NA+ V +V D T D T +L +G V +DT G Sbjct: 264 QIAIAGYTNAGKSSLINAMTGAGV-LVEDALFATLDPTTRRAELADGRQVVFTDTVGFVR 322 Query: 280 TDDIVEKEGIKRTFLEVENADLIL---------LLKEINS--------KKEISFPKNIDF 322 E K T EV +ADL+L LK+I + KE + Sbjct: 323 HLPTQLVEAFKSTLEEVLSADLMLHVVDGSDPFPLKQIEAVNAVIYDIVKETGEDAPPEI 382 Query: 323 IFIGTKSDLYSTYTEEYDH--------LISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374 I I E H +S+ TGEG++EL +++ L+++ + + IP Sbjct: 383 IVINKIDQADPLVLAELRHALDRDNVVYVSAKTGEGIDELTTRVELFLNSRDEHVQLLIP 442 Query: 375 SHKRHLY---HLSQTVRYLE 391 + + H TVR E Sbjct: 443 FTRGDVVDRIHTQGTVRSEE 462 >gi|145489331|ref|XP_001430668.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124397767|emb|CAK63270.1| unnamed protein product [Paramecium tetraurelia] Length = 416 Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 19/125 (15%) Query: 169 RSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDI-------SSHISQGKLGEIIRNGYK 221 R F + ++ N SS + L + D+ S I KL E+I+N K Sbjct: 192 REFATVLFKANTQQQQSNLSSASIYKKTLSQRQDLADDLTSSSKAIGADKLLELIKNYSK 251 Query: 222 ---------IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272 + ++G+ N GKSS+ N+L + V+ PG T+ + + +D + VKI Sbjct: 252 NDGVKSSVTVGVIGYPNVGKSSVINSLKRSKACAVSSTPGFTKGLQEVVIDSQ---VKII 308 Query: 273 DTAGI 277 D G+ Sbjct: 309 DCPGV 313 >gi|88798309|ref|ZP_01113895.1| GTP-binding protein [Reinekea sp. MED297] gi|88779085|gb|EAR10274.1| GTP-binding protein [Reinekea sp. MED297] Length = 286 Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 7/70 (10%) Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY 267 ++G +G+ +R+ V++G N GKS+L N LA K +A V D P TR+ I L + Sbjct: 108 NRGTVGKPVRS----VVVGIPNVGKSTLINGLAGKKIARVGDEPAVTRNQQKIQLAQDFT 163 Query: 268 LVKISDTAGI 277 L+ DT GI Sbjct: 164 LM---DTPGI 170 >gi|319955783|ref|YP_004167046.1| ferrous iron transport protein b [Nitratifractor salsuginis DSM 16511] gi|319418187|gb|ADV45297.1| ferrous iron transport protein B [Nitratifractor salsuginis DSM 16511] Length = 706 Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust. Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 7/95 (7%) Query: 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD---VLTIDLDLEG---YL 268 +++ K+V++G N GKSSL NA+A + V + G T D V T D +G Y Sbjct: 1 MVKEKIKVVLVGQPNVGKSSLINAIAHAKLH-VGNFAGVTVDVSEVKTTFCDAQGCAEYE 59 Query: 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303 + I D G +D +E + + +L E DLI+ Sbjct: 60 IDIIDLPGTYSLNDYSMEEKVTKDYLLKEKYDLIV 94 >gi|296876486|ref|ZP_06900537.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus parasanguinis ATCC 15912] gi|296432479|gb|EFH18275.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus parasanguinis ATCC 15912] Length = 286 Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 7/59 (11%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DVLTIDLDLEGYLVKISDTAGI 277 + +I+G NAGKS+L N LA K +A+V + PG T+ L + DLE I DT GI Sbjct: 126 RTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQWLKTNKDLE-----ILDTPGI 179 >gi|257452337|ref|ZP_05617636.1| GTP-binding protein [Fusobacterium sp. 3_1_5R] Length = 372 Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust. Identities = 29/99 (29%), Positives = 55/99 (55%), Gaps = 6/99 (6%) Query: 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR 255 I+ KN+ + K+ NG ++++LG +N GKSS+ N L K+ V+ PGTT Sbjct: 146 IVSCKNNYGMNGVLRKIQHFYPNGVEVLVLGVTNVGKSSVINRLLGKNRVTVSKYPGTT- 204 Query: 256 DVLTIDLDLEGYLVKISDTAGI----RETDDIVEKEGIK 290 +L+ ++ G + + DT G+ R +D ++E++ ++ Sbjct: 205 -LLSTMNEISGTNLCLIDTPGLIPEGRFSDLMIEEDQLR 242 >gi|227112906|ref|ZP_03826562.1| GTP-binding protein Era [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 301 Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust. Identities = 52/193 (26%), Positives = 87/193 (45%), Gaps = 37/193 (19%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRET 280 + I+G N GKS+L N L + ++I + P TTR + + + EG Y DT G+ Sbjct: 11 VAIVGRPNVGKSTLLNQLLGQKISITSRKPQTTRHRI-MGIHTEGPYQAIYVDTPGLH-- 67 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD 340 I EK I R L + I + I F+ GT + ++ D Sbjct: 68 --IEEKRAINR-------------LMNRAASSSIGDVELIIFVVEGTH------WNDDDD 106 Query: 341 HLISSFTGEGLEEL--INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-E 397 +++ + L L INK+ ++ ++K K LP H+ LSQ + +L++ ++ E Sbjct: 107 MVLNKLRDQKLPVLLAINKVDNV-TDKTKLLP--------HIQFLSQQMDFLDVVPISAE 157 Query: 398 KDCGLDIIAENLR 410 K +D IA +R Sbjct: 158 KGTNVDTIANIVR 170 >gi|331091567|ref|ZP_08340404.1| GTP-binding protein Era [Lachnospiraceae bacterium 2_1_46FAA] gi|330403732|gb|EGG83286.1| GTP-binding protein Era [Lachnospiraceae bacterium 2_1_46FAA] Length = 298 Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust. Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 3/95 (3%) Query: 216 IRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272 +R YK + ++G N GKS+L N L + +AI ++ P TTR+ + L E V Sbjct: 1 MRADYKSGFVTLIGRPNVGKSTLMNYLIGQKIAITSNKPQTTRNRIQTVLTTEQGQVVFV 60 Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307 DT GI + + + + + + D++L L E Sbjct: 61 DTPGIHKAKNKLGEYMVNVAERTLNEVDVVLWLVE 95 >gi|157128879|ref|XP_001661529.1| GTP-binding protein-invertebrate [Aedes aegypti] gi|108872457|gb|EAT36682.1| GTP-binding protein-invertebrate [Aedes aegypti] Length = 607 Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 3/62 (4%) Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 IR ++ I+G N GKSSL N+L +K +V PG T+ + + +D VK+ D+ Sbjct: 259 IRTSIRVGIVGLPNVGKSSLVNSLKRKRACLVGARPGITKQMQEVQIDSH---VKLLDSP 315 Query: 276 GI 277 GI Sbjct: 316 GI 317 >gi|328700593|ref|XP_003241317.1| PREDICTED: guanine nucleotide-binding protein-like 1-like [Acyrthosiphon pisum] Length = 592 Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 4/65 (6%) Query: 214 EIIRNGY-KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272 ++ +N Y I +LG NAGKSS+ NAL K V V+ PG T+ TI L V++ Sbjct: 339 DLFQNNYLTIGLLGQPNAGKSSVLNALMGKKVVSVSGTPGHTKHFQTIFLTSS---VRLC 395 Query: 273 DTAGI 277 D G+ Sbjct: 396 DCPGL 400 >gi|325299805|ref|YP_004259722.1| ferrous iron transport protein B [Bacteroides salanitronis DSM 18170] gi|324319358|gb|ADY37249.1| ferrous iron transport protein B [Bacteroides salanitronis DSM 18170] Length = 827 Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust. Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 9/128 (7%) Query: 179 SEEEDVQNFSSKEVLNDI---LFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 SEEE + EVLN I + + ++ I+QGK R + ++G+ N GK+SL Sbjct: 73 SEEEARASIKETEVLNPIAEDIPVSDEKLREIAQGK-----RRTINVALVGNPNCGKTSL 127 Query: 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 FN +A V + G T D D +GY ++ D G +E R + Sbjct: 128 FN-VASGAHEHVGNYSGVTVDAKAGHFDFQGYHFRLVDLPGTYSLSAYSPEELYVRKHII 186 Query: 296 VENADLIL 303 + D+I+ Sbjct: 187 EQTPDVII 194 >gi|304389932|ref|ZP_07371889.1| GTP-binding protein Era [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315657184|ref|ZP_07910068.1| GTP-binding protein Era [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|304326825|gb|EFL94066.1| GTP-binding protein Era [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315492287|gb|EFU81894.1| GTP-binding protein Era [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 333 Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 1/64 (1%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273 E R G+ VI G N GKS+L NA+ + +AI +D P TTR V + + + + D Sbjct: 35 EDFRAGFAAVI-GRPNVGKSTLINAMVGRKIAITSDRPETTRRVARGIVHRPDFQLILVD 93 Query: 274 TAGI 277 T GI Sbjct: 94 TPGI 97 >gi|289550632|ref|YP_003471536.1| GTP-binding protein YqeH, possibly involved in replication initiation [Staphylococcus lugdunensis HKU09-01] gi|289180164|gb|ADC87409.1| GTP-binding protein YqeH, possibly involved in replication initiation [Staphylococcus lugdunensis HKU09-01] Length = 366 Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 67/152 (44%), Gaps = 21/152 (13%) Query: 217 RNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 R+ + I+G +N GKS+L N L +KDV + PGTT D++ I LD ++ Sbjct: 158 RDHEDVYIVGTTNVGKSTLINKLIELSVGEKDVVTTSRFPGTTLDMIDIPLDETSFMY-- 215 Query: 272 SDTAGI------------RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN 319 DT GI +E I+ K+ IK+ ++ N L + +S K Sbjct: 216 -DTPGIIQEHQMTHLVTEKELKTIIPKKEIKQRVYQL-NESQTLFFGGLARIDYVSGGKR 273 Query: 320 IDFIFIGTKSDLYSTYTEEYDHLISSFTGEGL 351 F +++ T TE+ + L + G+ L Sbjct: 274 PLICFFSNDLNIHRTKTEKANELWKNQLGDLL 305 >gi|21672897|ref|NP_660962.1| ferrous iron transport protein B [Chlorobium tepidum TLS] gi|21645951|gb|AAM71304.1| ferrous iron transport protein B [Chlorobium tepidum TLS] Length = 712 Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 1/82 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + + G+ NAGKSSLFNAL V + PG T + LD +GY + + D G Sbjct: 9 VALAGNPNAGKSSLFNALTGAHQR-VGNFPGVTIEKHEGYLDYKGYRITVVDLPGTYSLT 67 Query: 282 DIVEKEGIKRTFLEVENADLIL 303 +E + R F+ E D+++ Sbjct: 68 PYSPEEIVTRRFIIDEKPDVVV 89 >gi|319947077|ref|ZP_08021311.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus australis ATCC 700641] gi|319747125|gb|EFV99384.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus australis ATCC 700641] Length = 290 Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 7/59 (11%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DVLTIDLDLEGYLVKISDTAGI 277 + +I+G NAGKS+L N LA K +A+V + PG T+ L + DLE I DT GI Sbjct: 130 RTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQWLKTNKDLE-----ILDTPGI 183 >gi|239909250|ref|YP_002955992.1| GTP-binding protein Era homolog [Desulfovibrio magneticus RS-1] gi|239799117|dbj|BAH78106.1| GTP-binding protein Era homolog [Desulfovibrio magneticus RS-1] Length = 305 Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust. Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 6/87 (6%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT---IDLDLEGYLVKISDTAGIR 278 +V+LG +NAGKS+L N L + ++IV+ P TTR+ ++ DL+ + DT G+ Sbjct: 10 VVMLGPTNAGKSTLLNRLIGQKISIVSPKPQTTRNSISGIITQGDLQAVFL---DTPGLH 66 Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL 305 + ++ + + AD++LL+ Sbjct: 67 RQKRGIAPLLLRSAYAALGQADVVLLI 93 >gi|239616689|ref|YP_002940011.1| GTP-binding proten HflX [Kosmotoga olearia TBF 19.5.1] gi|239505520|gb|ACR79007.1| GTP-binding proten HflX [Kosmotoga olearia TBF 19.5.1] Length = 379 Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust. Identities = 59/201 (29%), Positives = 95/201 (47%), Gaps = 35/201 (17%) Query: 207 ISQGKLGEIIR-----NGYKIV-ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTI 260 I Q K+ E+IR N +V +G++N GKSSL +AL D+ + + +T DV T Sbjct: 138 IKQRKVREVIRKKRQRNSIPVVSFVGYTNVGKSSLISALTGADLLVENQL-FSTLDVKTC 196 Query: 261 DLDL-EGYLVKISDTAG-IRE-TDDIVEKEGIKRTFLEVENADLILLL-----KEINSKK 312 L L G V ISDT G IRE +++ + K T E + +DL++++ + ++ K Sbjct: 197 RLKLPSGRRVLISDTVGFIRELPQELI--QSFKSTLEEAKFSDLLVVVLDASDRYLDEKL 254 Query: 313 EI-----------SFPK-----NIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELIN 356 EI + PK ID +L +++ + +S+ L+EL Sbjct: 255 EIINSTLRDIGAENVPKLNVINKIDKCTGERLKELGNSFPDAV--FVSAVLKYNLDELKE 312 Query: 357 KIKSILSNKFKKLPFSIPSHK 377 KI +LS F+K +P K Sbjct: 313 KIDIVLSQSFRKYKLVVPPEK 333 >gi|116621147|ref|YP_823303.1| small GTP-binding protein [Candidatus Solibacter usitatus Ellin6076] gi|122254883|sp|Q026Q1|ENGB_SOLUE RecName: Full=Probable GTP-binding protein EngB gi|116224309|gb|ABJ83018.1| small GTP-binding protein [Candidatus Solibacter usitatus Ellin6076] Length = 191 Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust. Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 22/167 (13%) Query: 221 KIVILGHSNAGKSSLFNAL-AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 +I LG SN GKSSL NAL K +A ++ PG T+ + +D + YLV + R Sbjct: 25 EIAFLGRSNVGKSSLINALTGHKKLAFTSNTPGRTQTINFYRVDEKFYLVDLPGYGYARV 84 Query: 280 TDDIVEKEGIK-RTFLEVEN----ADLILLLKEINSKKEISFPKNID-----FIFIGTKS 329 E+ + +LE + LIL + +K++ + +D ++ + TK+ Sbjct: 85 PAGFAEQWKVLIEHYLEFRETLKFSCLILDTRRGWMEKDLDLKRWLDHHGRPYLVVATKT 144 Query: 330 D----------LYSTYTEEYDHL-ISSFTGEGLEELINKIKSILSNK 365 D L + E + L S+ +G G+ E+ I + L + Sbjct: 145 DKLNQSEQERGLRAIRQEGVEPLPFSALSGRGVREIWQAITTTLQAR 191 >gi|114327657|ref|YP_744814.1| GTP-binding protein Era [Granulibacter bethesdensis CGDNIH1] gi|114315831|gb|ABI61891.1| GTP-binding protein era [Granulibacter bethesdensis CGDNIH1] Length = 335 Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust. Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 6/94 (6%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTIDLDL----EGYLVKI 271 R GY +LG NAGKS+L NAL V+IV+ TTR VL I + E + + Sbjct: 39 RCGYA-ALLGAPNAGKSTLVNALTGAKVSIVSPKAQTTRFRVLGIAMHQTEAGETSQILM 97 Query: 272 SDTAGIRETDDIVEKEGIKRTFLEVENADLILLL 305 DT GI +++ + + V++ADL LL+ Sbjct: 98 VDTPGIFTPRRRLDRAMVAAAWTGVQDADLGLLM 131 >gi|325849572|ref|ZP_08170810.1| ribosome biogenesis GTPase Era [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480053|gb|EGC83130.1| ribosome biogenesis GTPase Era [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 293 Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust. Identities = 42/201 (20%), Positives = 97/201 (48%), Gaps = 22/201 (10%) Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 +++G+ + ++G +N GKS+L + + ++I+++ P TTRD + I + E + DT Sbjct: 1 MKSGF-VSVVGRANVGKSTLMEKILGEKISIISNKPQTTRDEIKIIYNDENSQIIFLDTP 59 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKE------------INSKKEISFPK----- 318 GI+ + +++ ++ + ++++D++ + + ++ ++I PK Sbjct: 60 GIQTPRNKLQEHLLEVSEDSLKDSDIVTFIVDNSLTIGRLDKMILDLLEKIKVPKILLIN 119 Query: 319 NIDFIFIGTKSDLYSTYT--EEYDHL--ISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374 D + G + TY +D++ IS+ E +E+ I IK IL P + Sbjct: 120 KCDLLEEGEIDQIKKTYIGLNAFDYIIPISALNDENIEKYIQTIKEILPEGPLYYPSDMI 179 Query: 375 SHKRHLYHLSQTVRYLEMASL 395 + K + +S+ +R + +L Sbjct: 180 TDKNERFIVSEIIREKALRNL 200 >gi|294786873|ref|ZP_06752127.1| GTP-binding protein Era [Parascardovia denticolens F0305] gi|315226509|ref|ZP_07868297.1| GTP-binding protein Era [Parascardovia denticolens DSM 10105] gi|294485706|gb|EFG33340.1| GTP-binding protein Era [Parascardovia denticolens F0305] gi|315120641|gb|EFT83773.1| GTP-binding protein Era [Parascardovia denticolens DSM 10105] Length = 352 Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 1/63 (1%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273 E R+G+ I ++G N GKS+L NA+ K VAI + P TTR + + + + + D Sbjct: 39 EAFRSGF-IAVVGRPNVGKSTLINAIVGKQVAITSSKPETTRKAIRAIVTTDDCQLVLVD 97 Query: 274 TAG 276 T G Sbjct: 98 TPG 100 >gi|261820520|ref|YP_003258626.1| GTP-binding protein Era [Pectobacterium wasabiae WPP163] gi|261604533|gb|ACX87019.1| GTP-binding protein Era [Pectobacterium wasabiae WPP163] Length = 301 Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust. Identities = 52/193 (26%), Positives = 87/193 (45%), Gaps = 37/193 (19%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRET 280 + I+G N GKS+L N L + ++I + P TTR + + + EG Y DT G+ Sbjct: 11 VAIVGRPNVGKSTLLNQLLGQKISITSRKPQTTRHRI-MGIHTEGPYQAIYVDTPGLH-- 67 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYD 340 I EK I R L + I + I F+ GT + ++ D Sbjct: 68 --IEEKRAINR-------------LMNRAASSSIGDVELIIFVVEGTH------WNDDDD 106 Query: 341 HLISSFTGEGLEEL--INKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLN-E 397 +++ + L L INK+ ++ ++K K LP H+ LSQ + +L++ ++ E Sbjct: 107 MVLNKLRDQKLPVLLAINKVDNV-TDKTKLLP--------HIQFLSQQMDFLDVVPISAE 157 Query: 398 KDCGLDIIAENLR 410 K +D IA +R Sbjct: 158 KGTNVDTIASIVR 170 >gi|210617164|ref|ZP_03291431.1| hypothetical protein CLONEX_03653 [Clostridium nexile DSM 1787] gi|210149439|gb|EEA80448.1| hypothetical protein CLONEX_03653 [Clostridium nexile DSM 1787] Length = 299 Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust. Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 3/95 (3%) Query: 216 IRNGYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272 +R YK + ++G N GKS+L N L + +AI ++ P TTR+ + L +E + Sbjct: 1 MRADYKSGFVTLIGRPNVGKSTLMNYLIGQKIAITSNKPQTTRNRIQTVLTMEEGQIVFV 60 Query: 273 DTAGIRETDDIVEKEGIKRTFLEVENADLILLLKE 307 DT GI + + + + + + D++L L E Sbjct: 61 DTPGIHKAKNKLGEYMVNVAERTLNEVDVVLWLVE 95 >gi|78189141|ref|YP_379479.1| GTP-binding protein HflX [Chlorobium chlorochromatii CaD3] gi|78171340|gb|ABB28436.1| GTP-binding protein HflX [Chlorobium chlorochromatii CaD3] Length = 431 Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust. Identities = 51/176 (28%), Positives = 83/176 (47%), Gaps = 24/176 (13%) Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRNGY----------KIVILGHSNAGKSSLFNALA 240 ++ D ++N I+ + + KL E+ R Y ++ ++G++NAGKS+L NAL Sbjct: 165 QIETDRRLVRNRIA--LLKKKLREVERQHYTRTRSRQNVSRVSLVGYTNAGKSTLMNALC 222 Query: 241 KKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAG-IRETDDIVEKEGIKRTFLEVEN 298 + A + T D T L+L+ LV +SDT G IR+ + E K T EV Sbjct: 223 PQAEAFAENRLFATLDTKTRRLELKINKLVLLSDTVGFIRKLPHTL-VESFKSTLDEVLQ 281 Query: 299 ADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTG-EGLEE 353 AD +L + +I+ SF + I + D ++D +I F + LEE Sbjct: 282 ADFLLHVIDISHP---SFEEQIAVV-----RDTLREIGVQHDQIIEVFNKIDALEE 329 >gi|323359833|ref|YP_004226229.1| GTPase [Microbacterium testaceum StLB037] gi|323276204|dbj|BAJ76349.1| GTPase [Microbacterium testaceum StLB037] Length = 297 Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 1/61 (1%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R+G+ + +G N GKS+L NAL + VAI +D P TTR + ++ G + + DT G Sbjct: 5 RSGF-VTFVGRPNVGKSTLTNALVGEKVAITSDKPQTTRRAIRGIVNRPGGQLVVVDTPG 63 Query: 277 I 277 I Sbjct: 64 I 64 >gi|254421034|ref|ZP_05034758.1| GTP-binding proten HflX [Brevundimonas sp. BAL3] gi|196187211|gb|EDX82187.1| GTP-binding proten HflX [Brevundimonas sp. BAL3] Length = 437 Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 77/174 (44%), Gaps = 34/174 (19%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRET 280 I ++G++NAGKS+LFN L +V D+ T D + L +G ++DT G Sbjct: 208 IALVGYTNAGKSTLFNRLTGSEV-FAKDLLFATLDTTQRTIRLPQGRPAIVADTVGF--I 264 Query: 281 DDIVEK--EGIKRTFLEVENADLILLLKEINSK-------------KEISFP--KNIDFI 323 D+ + E + T EV ADLIL +++I S K+I P K + Sbjct: 265 SDLPHELVESFRATLEEVGEADLILHVRDIASADSDAQAKDVETVLKQIETPEGKTRRVL 324 Query: 324 FIGTKSDLYSTYTEE-----YDHL--------ISSFTGEGLEELINKIKSILSN 364 + K DL E + L +S++TGEG+E L I ++ + Sbjct: 325 EVWNKIDLLDDEAREAVLGQAERLAKTGEAVAVSAWTGEGIEPLRQTIAGLIDD 378 >gi|188581485|ref|YP_001924930.1| GTP-binding protein Era [Methylobacterium populi BJ001] gi|179344983|gb|ACB80395.1| GTP-binding protein Era [Methylobacterium populi BJ001] Length = 319 Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust. Identities = 51/194 (26%), Positives = 85/194 (43%), Gaps = 32/194 (16%) Query: 208 SQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG- 266 SQ + R G+ + ++G NAGKS+L NAL V+IV+ TTR L + +EG Sbjct: 16 SQETTPQETRAGF-VALIGVPNAGKSTLLNALVGAKVSIVSRKVQTTR-ALVRGIVMEGD 73 Query: 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK-------------- 312 V + DT GI +++ + + +AD + LL I+++K Sbjct: 74 AQVVLVDTPGIFAPKRRLDRAMVHSAWSGAADADAVCLL--IDARKGADDEVETILRRLP 131 Query: 313 EISFPK-----NIDFI----FIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILS 363 E+ PK ID I + + L + E LIS+ G+G+ +L + L+ Sbjct: 132 EVKRPKILILNKIDLIARERLLELVAKLNAMVPFEDTFLISALNGDGVADL----RKALA 187 Query: 364 NKFKKLPFSIPSHK 377 + P+ P + Sbjct: 188 ARMPPGPWLYPEDQ 201 >gi|58617284|ref|YP_196483.1| GTP-binding protein Era [Ehrlichia ruminantium str. Gardel] gi|81311297|sp|Q5FFN4|ERA_EHRRG RecName: Full=GTPase Era gi|58416896|emb|CAI28009.1| GTP-binding protein Era homolog [Ehrlichia ruminantium str. Gardel] Length = 296 Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 72/154 (46%), Gaps = 21/154 (13%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 I+G +NAGKS+L N L + VA VT TTR + + E + DT GI Sbjct: 13 IVGTTNAGKSTLVNVLVGQKVAAVTPKVQTTRVRMHAVSNHENVQLIFIDTPGIFSPKTK 72 Query: 284 VEKEGIKRTFLEVENADLILLLKEINS------KKEISFPK--NIDFIFIGTKSD----- 330 +EK +K ++ ++ + +++L ++ + KK I K N++ I + K D Sbjct: 73 LEKFLVKHAWMSLKGIENVIVLVDVKNYLNQHLKKIIDRIKHSNLNAILVLNKIDIVHQS 132 Query: 331 --------LYSTYTEEYDHLISSFTGEGLEELIN 356 +YS Y IS+ G G+++L++ Sbjct: 133 IVSEVIEYMYSLYKFSKAFTISALYGIGIDKLVD 166 >gi|320100421|ref|YP_004176013.1| small GTP-binding protein [Desulfurococcus mucosus DSM 2162] gi|319752773|gb|ADV64531.1| small GTP-binding protein [Desulfurococcus mucosus DSM 2162] Length = 695 Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 1/80 (1%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 K++ +G N GKSS+FN + K V V + PG T V ++ +GY + + D GI Sbjct: 7 KVLFIGQPNVGKSSIFNMVTKSHVE-VGNWPGKTVAVNKGEVSFKGYKLILYDLPGIYGF 65 Query: 281 DDIVEKEGIKRTFLEVENAD 300 + ++E + R + +E D Sbjct: 66 TTLTQEELVAREAILLEKPD 85 >gi|66818499|ref|XP_642909.1| hypothetical protein DDB_G0276985 [Dictyostelium discoideum AX4] gi|60471024|gb|EAL68994.1| hypothetical protein DDB_G0276985 [Dictyostelium discoideum AX4] Length = 743 Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust. Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 7/70 (10%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-------DLEGYLVKISDT 274 + +G SN GKSSL NAL ++ +A +D PG T+ + +L DL GY + Sbjct: 278 VAFIGRSNVGKSSLINALTQRGLAKTSDKPGQTQSINWFELGSTLYLVDLPGYGFAFAKE 337 Query: 275 AGIRETDDIV 284 + + DI Sbjct: 338 TLVEQWSDIT 347 >gi|293365453|ref|ZP_06612162.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus oralis ATCC 35037] gi|307703409|ref|ZP_07640351.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037] gi|322375249|ref|ZP_08049762.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp. C300] gi|291315821|gb|EFE56265.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus oralis ATCC 35037] gi|307622816|gb|EFO01811.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037] gi|321279512|gb|EFX56552.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp. C300] Length = 283 Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 7/59 (11%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DVLTIDLDLEGYLVKISDTAGI 277 + +I+G NAGKS+L N LA K +A+V + PG T+ L + DLE I DT GI Sbjct: 123 RTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQWLKTNKDLE-----ILDTPGI 176 >gi|282858168|ref|ZP_06267363.1| GTP-binding protein Era [Pyramidobacter piscolens W5455] gi|282584090|gb|EFB89463.1| GTP-binding protein Era [Pyramidobacter piscolens W5455] Length = 303 Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust. Identities = 27/94 (28%), Positives = 50/94 (53%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + ++G N GKSSL N + K ++IV+ P TTRD + + + DT GI Sbjct: 10 VAVIGRPNVGKSSLLNRILKYKLSIVSAKPQTTRDNILGLYNGAASQILFVDTPGIHAPL 69 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS 315 + + + ++R +E+A+++L + I+ + E S Sbjct: 70 NKLGERLVERAVSGLEDANVVLYVVTIDDRPEQS 103 >gi|260913831|ref|ZP_05920305.1| GTP-binding protein HflX [Pasteurella dagmatis ATCC 43325] gi|260631918|gb|EEX50095.1| GTP-binding protein HflX [Pasteurella dagmatis ATCC 43325] Length = 449 Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust. Identities = 48/201 (23%), Positives = 92/201 (45%), Gaps = 27/201 (13%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISDTAG-IRE 279 I ++G++NAGKS+LFNA+ + +V + T L + L G + ++DT G IR Sbjct: 224 ISLVGYTNAGKSTLFNAITQANVYAADQLFATLDPTLRRLQLQDVGTTI-LADTVGFIRH 282 Query: 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSD------LY 332 D+V K T E A L+L + + +++ +D + + K++ +Y Sbjct: 283 LPHDLV--SAFKSTLQETTEASLLLHVIDCAEPRKLENIAAVDEVLVEIKANEIPILLVY 340 Query: 333 STYTE--------EYDH-------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHK 377 + + EYD IS+ +G+G++ L + I+ L N+ L ++ ++ Sbjct: 341 NKIDQLEGVEPHIEYDEENKPNAVYISASSGKGIDLLFDAIRQRLKNEILSLSLTLATYA 400 Query: 378 RHLYHLSQTVRYLEMASLNEK 398 L H + + +NE+ Sbjct: 401 GKLRHYLYQLDCIRKEDINEQ 421 >gi|227495177|ref|ZP_03925493.1| possible GTP-binding protein HflX [Actinomyces coleocanis DSM 15436] gi|226831629|gb|EEH64012.1| possible GTP-binding protein HflX [Actinomyces coleocanis DSM 15436] Length = 543 Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust. Identities = 51/213 (23%), Positives = 85/213 (39%), Gaps = 32/213 (15%) Query: 194 NDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDV----AIVTD 249 N+I +K + + GEI + I G++NAGKS+L N L +V A+ Sbjct: 294 NEIAAMKPARDTQRQSRRSGEI----PSVAIAGYTNAGKSTLLNRLTGAEVMVQNALFAT 349 Query: 250 IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309 + T R T D G L ++DT G E + T EV +ADLI+ + + Sbjct: 350 LDPTVRQTKTDD----GRLYTLTDTVGFVRNLPTQLVEAFRSTLEEVGDADLIVHVVDAA 405 Query: 310 SKKEISFPKNIDFIF-------------------IGTKSDLYSTYTEEYDHL-ISSFTGE 349 + K + +F + T++DL + + + +S+ TG Sbjct: 406 HPDPMGQIKAVHAVFETIDGAMEIPEIIALNKADLATEADLAVLRSLLPNSVAVSAHTGA 465 Query: 350 GLEELINKIKSILSNKFKKLPFSIPSHKRHLYH 382 G+ +L I +L K+ +P L H Sbjct: 466 GMGDLQELIAQMLPRPSVKVDVVVPYAHGDLVH 498 >gi|225077528|ref|ZP_03720727.1| hypothetical protein NEIFLAOT_02591 [Neisseria flavescens NRL30031/H210] gi|284800155|ref|ZP_06390567.1| tRNA modification GTPase TrmE [Neisseria subflava NJ9703] gi|224951148|gb|EEG32357.1| hypothetical protein NEIFLAOT_02591 [Neisseria flavescens NRL30031/H210] gi|284795882|gb|EFC51229.1| tRNA modification GTPase TrmE [Neisseria subflava NJ9703] Length = 86 Score = 42.4 bits (98), Expect = 0.16, Method: Composition-based stats. Identities = 19/39 (48%), Positives = 28/39 (71%) Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++ AE+LRLA + +ITG + LL +IFS+FCIGK Sbjct: 48 IELFAEHLRLAQNACSEITGEFTADDLLGVIFSRFCIGK 86 >gi|152992113|ref|YP_001357834.1| GTP-binding protein [Sulfurovum sp. NBC37-1] gi|151423974|dbj|BAF71477.1| GTP-binding protein [Sulfurovum sp. NBC37-1] Length = 464 Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%) Query: 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETD 281 ++GH N GKSS+ + LA D ++D PGTT + L ++G L ++ DT G + Sbjct: 9 AVVGHPNKGKSSIVSTLAFDDTVQISDTPGTTTKKRSFPLTVDGKVLYELFDTPGFQRAR 68 Query: 282 DIV 284 ++ Sbjct: 69 SVL 71 >gi|104779390|ref|YP_605888.1| ribosome biogenesis GTP-binding protein YsxC [Pseudomonas entomophila L48] gi|166225969|sp|Q1IGY1|ENGB_PSEE4 RecName: Full=Probable GTP-binding protein EngB gi|95108377|emb|CAK13071.1| putative GTP-binding protein EngB [Pseudomonas entomophila L48] Length = 210 Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust. Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 1/82 (1%) Query: 191 EVLNDILFLKNDISSHISQGKLGEIIRN-GYKIVILGHSNAGKSSLFNALAKKDVAIVTD 249 +V N IL L + +S K+ + + GY++ G SNAGKSS N L +A + Sbjct: 2 QVKNPILGLCQKATFALSAAKVEQCPEDQGYEVAFAGRSNAGKSSALNTLTHASLARTSK 61 Query: 250 IPGTTRDVLTIDLDLEGYLVKI 271 PG T+ + LD E LV + Sbjct: 62 TPGRTQLLNFFSLDDERRLVDL 83 >gi|117919051|ref|YP_868243.1| GTP-binding protein, HSR1-related [Shewanella sp. ANA-3] gi|117611383|gb|ABK46837.1| GTP-binding protein, HSR1-related [Shewanella sp. ANA-3] Length = 435 Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust. Identities = 62/227 (27%), Positives = 96/227 (42%), Gaps = 34/227 (14%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRE- 279 + ++G++NAGKS+LFNAL DV + T L LDL V ++DT G IR Sbjct: 200 VSLVGYTNAGKSTLFNALTSSDVYAADQLFATLDPTLR-KLDLPDGAVILADTVGFIRHL 258 Query: 280 TDDIVEKEGIKRTFLEVENADLILLLKEI-------NSKKEISFPKNIDF-----IFIGT 327 D+V K T E ADL+L + + N ++ + ++ID + + Sbjct: 259 PHDLV--AAFKATLQETRQADLLLHIVDCADENMADNFEQVQNVLEDIDAAEVMQLVVCN 316 Query: 328 KSDLYSTYTE--EYDH-------LISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKR 378 K DL T EYD +S+ G + L+ I ++ + IP+ Sbjct: 317 KIDLLEDVTPRIEYDEHGKPVRVWLSAQKRLGFDLLLKAITELIGEVIHEFTLKIPATAG 376 Query: 379 HLYHLSQTVRYLEMASLNEKDCGLDIIAENL------RLASVSLGKI 419 H +L Q R + D G I++ L RLA S G++ Sbjct: 377 H--YLGQFYRLDAIQQKEYDDLGNCILSVRLSDADWRRLAKQSQGEL 421 >gi|164686279|ref|ZP_02210309.1| hypothetical protein CLOBAR_02717 [Clostridium bartlettii DSM 16795] gi|164601881|gb|EDQ95346.1| hypothetical protein CLOBAR_02717 [Clostridium bartlettii DSM 16795] Length = 296 Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 1/91 (1%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 + I+G N GKS+L N + + +AI++D P TTR+ + E + DT GI + Sbjct: 7 VSIVGRPNVGKSTLMNNVVGEKIAIMSDKPQTTRNTIQAVYTDEECQIVFLDTPGIHKPK 66 Query: 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK 312 + + + +K +N DL+L + + +SKK Sbjct: 67 NKLGEFMVKSATDAFKNVDLVLFVVD-DSKK 96 >gi|28493251|ref|NP_787412.1| GTP-binding protein Era [Tropheryma whipplei str. Twist] gi|28572637|ref|NP_789417.1| GTP-binding protein Era [Tropheryma whipplei TW08/27] gi|81723839|sp|Q83MZ2|ERA_TROWT RecName: Full=GTPase Era gi|81723852|sp|Q83NI3|ERA_TROW8 RecName: Full=GTPase Era gi|28410769|emb|CAD67155.1| GTP-binding protein [Tropheryma whipplei TW08/27] gi|28476292|gb|AAO44381.1| GTP-binding protein Era-like protein [Tropheryma whipplei str. Twist] Length = 301 Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 3/64 (4%) Query: 219 GYK---IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 GY+ I ++G N GKS+L N+L + ++I +D P TTR ++ + + I+DT Sbjct: 9 GYRSGIITLVGRPNVGKSTLINSLVGEHLSITSDKPQTTRRIIRGVISRMNAQIAITDTP 68 Query: 276 GIRE 279 GI + Sbjct: 69 GIHK 72 >gi|313158000|gb|EFR57406.1| ribosome biogenesis GTPase Era [Alistipes sp. HGB5] Length = 293 Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 47/84 (55%) Query: 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 I+G+ N GKS+L NAL + ++I+T TTR + + E + + SDT GI + Sbjct: 9 IIGNPNVGKSTLMNALVGEKLSIITSKAQTTRHRIMGIVSGEDFQIVYSDTPGILKPSYK 68 Query: 284 VEKEGIKRTFLEVENADLILLLKE 307 +++ +K V +AD+IL + + Sbjct: 69 LQESMMKFVTGAVTDADVILYVTD 92 >gi|293372504|ref|ZP_06618886.1| putative ribosome small subunit-dependent GTPase A [Bacteroides ovatus SD CMC 3f] gi|292632313|gb|EFF50909.1| putative ribosome small subunit-dependent GTPase A [Bacteroides ovatus SD CMC 3f] Length = 362 Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust. Identities = 40/117 (34%), Positives = 56/117 (47%), Gaps = 18/117 (15%) Query: 173 EADLDF---SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSN 229 ++DLDF S EE + + S N I I + +L E I G +V +G S Sbjct: 160 KSDLDFDRQSVEEQINHIS-----NQIPVFFTSIHQPQTILRLRESISEGETVVFVGSSG 214 Query: 230 AGKSSLFNALAKKDVAIVTDI---PGTTRDVLT----IDLDLEGYLVKISDTAGIRE 279 GKSSL NAL +K V + +DI G R T + ++ G L+ DT G+RE Sbjct: 215 VGKSSLVNALCEKTVLLTSDISLSTGKGRHTSTRREMVLMNDSGVLI---DTPGVRE 268 >gi|169628762|ref|YP_001702411.1| GTP-binding protein Era [Mycobacterium abscessus ATCC 19977] gi|169240729|emb|CAM61757.1| GTP-binding protein Era homolog [Mycobacterium abscessus] Length = 304 Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 1/61 (1%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R+G+ + +G N GKS+L NAL + VAI ++ P TTR + + E + + + DT G Sbjct: 7 RSGF-VCFVGRPNTGKSTLTNALVGQKVAITSNRPQTTRHTIRGIVHRENFQIVLVDTPG 65 Query: 277 I 277 + Sbjct: 66 L 66 >gi|159469724|ref|XP_001693013.1| predicted protein [Chlamydomonas reinhardtii] gi|158277815|gb|EDP03582.1| predicted protein [Chlamydomonas reinhardtii] Length = 380 Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 3/62 (4%) Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 I+ + ++G N GKSSL N+L ++ VA V + PG T+ V + LD +K+ D+ Sbjct: 230 IKTAITVGVVGLPNVGKSSLINSLKRQRVAQVGNTPGVTKSVQEVVLDKH---IKLLDSP 286 Query: 276 GI 277 G+ Sbjct: 287 GV 288 >gi|322389595|ref|ZP_08063144.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus parasanguinis ATCC 903] gi|321143721|gb|EFX39150.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus parasanguinis ATCC 903] Length = 286 Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 7/59 (11%) Query: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DVLTIDLDLEGYLVKISDTAGI 277 + +I+G NAGKS+L N LA K +A+V + PG T+ L + DLE I DT GI Sbjct: 126 RTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQWLKTNKDLE-----ILDTPGI 179 >gi|229825491|ref|ZP_04451560.1| hypothetical protein GCWU000182_00851 [Abiotrophia defectiva ATCC 49176] gi|229790054|gb|EEP26168.1| hypothetical protein GCWU000182_00851 [Abiotrophia defectiva ATCC 49176] Length = 393 Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust. Identities = 40/157 (25%), Positives = 75/157 (47%), Gaps = 11/157 (7%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRET 280 I G N GKSSL NA+ +++++V+DI GTT D + ++L V I DTAG+ + Sbjct: 14 IAFFGLRNVGKSSLVNAVTGQELSVVSDIKGTTTDPVKKAMELLPLGPVVIIDTAGLDDE 73 Query: 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF--------PKNIDFIFIGTKSDLY 332 + + +K++ ++ D+ +L+ E + + + I ++ KSDL Sbjct: 74 GKLGDLR-VKKSLEILDITDIAVLVTEADRELNELEKELLENFSKRKIPYLIALNKSDLT 132 Query: 333 STYTEEYDH-LISSFTGEGLEELINKIKSILSNKFKK 368 EE + L+S+ G + E ++ + +K Sbjct: 133 ENRKEEENEILVSAKDGTNIYEFKERLAKLFPESKRK 169 >gi|160933846|ref|ZP_02081234.1| hypothetical protein CLOLEP_02708 [Clostridium leptum DSM 753] gi|156867723|gb|EDO61095.1| hypothetical protein CLOLEP_02708 [Clostridium leptum DSM 753] Length = 396 Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust. Identities = 40/168 (23%), Positives = 81/168 (48%), Gaps = 18/168 (10%) Query: 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAG 276 N I + G N+GKSSL NA+ ++ A+V+D GTT D + +++ G + DTAG Sbjct: 10 NRVHIGLYGKRNSGKSSLINAITNQETALVSDFAGTTTDPVYKAMEIHGIGPCMLIDTAG 69 Query: 277 IRETDDIVEKEGIKRTFLEVENADLILLL---KEINSKKE---ISFPKNIDFIFIGTKSD 330 + ++ + +++T +E D+ +L+ + + +KE + K + + K D Sbjct: 70 FDDEGEL-GRLRVEKTRQALEKTDIAVLVFDGRPVTEEKEWLSLLKQKKTPILAVVNKLD 128 Query: 331 LYSTYTEEYDH----------LISSFTGEGLEELINKIKSILSNKFKK 368 L D L+S+ T EG++++ ++ +L +++ Sbjct: 129 LLENPQAYADTLKRDYGLSPVLVSTKTREGIDKVREELIRLLPEDYEQ 176 >gi|116492472|ref|YP_804207.1| GTP-binding protein YqeH [Pediococcus pentosaceus ATCC 25745] gi|116102622|gb|ABJ67765.1| Predicted GTPase [Pediococcus pentosaceus ATCC 25745] Length = 370 Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 8/77 (10%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYL 268 E +R G + ++G +N GKS+L N+L KDV + PGTT D + I D L Sbjct: 161 EKLRKGRDVYVVGVTNVGKSTLINSLIAIRNGIKDVITTSRFPGTTLDRIEIPFDDHSNL 220 Query: 269 VKISDTAGIRETDDIVE 285 + DT GI D + Sbjct: 221 I---DTPGIIHADQMAH 234 >gi|323143742|ref|ZP_08078410.1| GTP-binding protein HflX [Succinatimonas hippei YIT 12066] gi|322416455|gb|EFY07121.1| GTP-binding protein HflX [Succinatimonas hippei YIT 12066] Length = 454 Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust. Identities = 50/179 (27%), Positives = 81/179 (45%), Gaps = 34/179 (18%) Query: 216 IRNGYKIV-ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL-TIDLDLEGYLVKISD 273 ++N +V +G++NAGKS+LFN L K V + T L T+ LD+ G V +D Sbjct: 195 VKNAVPVVSFVGYTNAGKSTLFNRLTKSAVYEADQLFATLDPTLRTVSLDVVGKAV-FAD 253 Query: 274 TAG-IRE-TDDIVEKEGIKRTFLEVENADLILL------------LKEINSKKEISFPKN 319 T G IR D++ K T E ADL+L +K +N+ + Sbjct: 254 TVGFIRHLPHDLI--AAFKSTLEETVKADLLLHIIDAADKRVEENIKAVNAVLKQIGADE 311 Query: 320 IDFIFIGTKSDLYSTYTEEYDHL------------ISSFTGEGLEELINKIKSILSNKF 366 + + + K+DL T YD + +S+ TG GL +L++ + +LS+ Sbjct: 312 VPTLLVFNKADLLDT---PYDKVVRDETGKPVRVNVSAKTGSGLSDLLSCVSELLSSNL 367 >gi|302390344|ref|YP_003826165.1| GTP-binding proten HflX [Thermosediminibacter oceani DSM 16646] gi|302200972|gb|ADL08542.1| GTP-binding proten HflX [Thermosediminibacter oceani DSM 16646] Length = 417 Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust. Identities = 58/175 (33%), Positives = 81/175 (46%), Gaps = 28/175 (16%) Query: 222 IVILGHSNAGKSSLFNALAKKDVA----IVTDIPGTTRDVLTIDLDLEGYLVKISDTAG- 276 I ++G++NAGKS+L NAL V+ + + TTR +L D G V +SDT G Sbjct: 198 ISLVGYTNAGKSTLMNALTGAGVSSNDRLFDTLDPTTRALLLPD----GRRVLLSDTVGF 253 Query: 277 IRE-TDDIVEKEGIKRTFLEVENADLILLLKEINSKK---EISFPK---------NIDFI 323 IR+ +IV E K T EV+ ADL++ + + +S K EIS K NI I Sbjct: 254 IRKLPHEIV--EAFKATLEEVKEADLLIHVVDASSPKADEEISTVKSVLKEIGAENIPTI 311 Query: 324 FIGTKSDLYS----TYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374 K D + EE IS+ G L+ L KI +L + IP Sbjct: 312 LALNKIDRVNHRELITGEENVVEISALCGTNLDILREKICQLLPQTREHALLCIP 366 >gi|224097032|ref|XP_002310817.1| predicted protein [Populus trichocarpa] gi|222853720|gb|EEE91267.1| predicted protein [Populus trichocarpa] Length = 414 Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 1/63 (1%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R+GY + ++G N GKS+L N + + ++IVTD P TTR + Y + + DT G Sbjct: 115 RSGY-VAVVGKPNVGKSTLSNQMIGQKLSIVTDKPQTTRHRILGICSAPDYQMILYDTPG 173 Query: 277 IRE 279 + E Sbjct: 174 VIE 176 >gi|329770262|ref|ZP_08261651.1| ribosome biogenesis GTPase YqeH [Gemella sanguinis M325] gi|328836966|gb|EGF86612.1| ribosome biogenesis GTPase YqeH [Gemella sanguinis M325] Length = 372 Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust. Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 15/101 (14%) Query: 216 IRNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270 +RNG + I+G +N GKS+ N L K+V + PGTT ++ I LD Sbjct: 161 LRNGKDVYIIGATNVGKSTFINKLIELTSGDKNVITTSHFPGTTLGMIEIPLD---RATS 217 Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311 I DT GI DI +L+ ++ L++ KEI ++ Sbjct: 218 IYDTPGIILDYDIAH-------YLDAKSLKLVMPKKEIKAR 251 >gi|315425495|dbj|BAJ47157.1| GTP-binding protein HflX [Candidatus Caldiarchaeum subterraneum] gi|315427506|dbj|BAJ49109.1| GTP-binding protein HflX [Candidatus Caldiarchaeum subterraneum] Length = 412 Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust. Identities = 54/209 (25%), Positives = 91/209 (43%), Gaps = 41/209 (19%) Query: 173 EADLDFSEEEDVQNFSS-KEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAG 231 EAD+ ++E + S+ K+ L I KN + +G L + GY +NAG Sbjct: 147 EADVYYNE--VFRRISTIKQKLKQIRMRKNLVRQRRLEGGLPTVALTGY-------TNAG 197 Query: 232 KSSLFNALAKKD----VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKE 287 K++LFN + ++ + T + T R V G +SDT G + + E Sbjct: 198 KTTLFNRFSGEEHPAGPQLFTTLSTTARIV-----KFRGRKAYLSDTVGFIKNLPHLLVE 252 Query: 288 GIKRTFLEVENADLILLLKEINSKKEISFP--------------KNIDFIFIGTKSDLYS 333 T E ADL+LL+ +I+ +K + KN+ + + K D + Sbjct: 253 SFHSTLSEFIYADLLLLVVDISEEKSVVESKLNTCLNVLDEVGVKNVPILVVFNKIDSTA 312 Query: 334 TYTE-------EYDHL-ISSFTGEGLEEL 354 Y E EY ++ +S++TG+GL+ L Sbjct: 313 DYREKIESIKPEYRYVAVSAWTGQGLDTL 341 >gi|294790832|ref|ZP_06755990.1| GTP-binding protein Era [Scardovia inopinata F0304] gi|294458729|gb|EFG27082.1| GTP-binding protein Era [Scardovia inopinata F0304] Length = 343 Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 1/73 (1%) Query: 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273 + R+G+ I ++G N GKS+L N+L K VAI + P TTR + + + + + D Sbjct: 20 QTFRSGF-IAVVGRPNVGKSTLINSLVGKQVAITSSKPETTRKAIRAIVTRDDCQLVLVD 78 Query: 274 TAGIRETDDIVEK 286 T GI ++ K Sbjct: 79 TPGIHRPRTVLGK 91 >gi|293347429|ref|XP_001067187.2| PREDICTED: RAS and EF-hand domain containing-like [Rattus norvegicus] Length = 709 Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust. Identities = 40/148 (27%), Positives = 64/148 (43%), Gaps = 21/148 (14%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIP-GTTRDVLTIDLDLEGYLVKISDTA 275 + YKIV+ G + GKSS L K + T G + T+ +D E ++++ DTA Sbjct: 508 QKAYKIVLAGDAAVGKSSFLMRLCKNEFQGNTSATLGVDFQMKTLMVDGEPTVLQLWDTA 567 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK------------EISFPKNIDFI 323 G I +++ AD +LLL ++ +K E +++ + Sbjct: 568 GQERF------RSIAKSYFR--KADGVLLLYDVTCEKSFLNVREWVAMVEDGTHRSVPIM 619 Query: 324 FIGTKSDLYSTYTEEYDHLISSFTGEGL 351 +G K+DL T E ISS GE L Sbjct: 620 LVGNKADLRDAATAENQKCISSHLGEKL 647 >gi|73662470|ref|YP_301251.1| GTP-binding protein YqeH [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72494985|dbj|BAE18306.1| putative GTPase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 368 Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust. Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 21/104 (20%) Query: 216 IRNGYKIVILGHSNAGKSSLFNAL-----AKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270 +RN + I+G +N GKS+L N L +K+V + PGTT D++ I LD Sbjct: 159 LRNNDDVYIVGTTNVGKSTLINKLIERSVGEKNVVTTSRFPGTTLDMIDIPLD------- 211 Query: 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314 DT+ + +T ++++ + E E LK I KKE+ Sbjct: 212 --DTSFMYDTPGVIQEHQMTHYVTEKE-------LKTIMPKKEV 246 >gi|114567081|ref|YP_754235.1| Era, Era/TrmE family GTP-binding protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338016|gb|ABI68864.1| GTP-binding protein Era, Era/TrmE family [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 293 Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust. Identities = 26/94 (27%), Positives = 50/94 (53%), Gaps = 1/94 (1%) Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 +++G+ + I+G N GKS+L N + + +AIV++ P TTR + E V DT Sbjct: 1 MKSGF-VSIVGRPNVGKSTLLNTIIGEKIAIVSEKPQTTRTRIQGIYTCERGQVIFVDTP 59 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309 GI + ++ + +K + +E D+I + ++ Sbjct: 60 GIHKPKHLLGEYMVKVSARSLEEVDIIYYMTDVT 93 >gi|167772058|ref|ZP_02444111.1| hypothetical protein ANACOL_03432 [Anaerotruncus colihominis DSM 17241] gi|167665856|gb|EDS09986.1| hypothetical protein ANACOL_03432 [Anaerotruncus colihominis DSM 17241] Length = 303 Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust. Identities = 27/57 (47%), Positives = 35/57 (61%), Gaps = 2/57 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-IDLDLEGYLVKISDTAGI 277 + I+G N GKSSL NAL + VAIV+ P TTR +T + D + LV I DT G+ Sbjct: 15 VAIVGRPNVGKSSLLNALVGEKVAIVSSKPQTTRTRITGVLTDGDTQLVFI-DTPGL 70 >gi|153946878|ref|YP_001399745.1| GTPase [Yersinia pseudotuberculosis IP 31758] gi|152958373|gb|ABS45834.1| putative GTPase [Yersinia pseudotuberculosis IP 31758] Length = 291 Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 3/85 (3%) Query: 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 I I+G + +GKSSL NAL + +V V+D+ TRD L + L + + + D G+ E++ Sbjct: 39 IGIMGKTGSGKSSLCNALFQSEVTPVSDVNACTRDTLRLRLSSGVHSLILVDLPGVGESE 98 Query: 282 DI-VEKEGIKRTFLEVENADLILLL 305 E E + R L DLIL + Sbjct: 99 QRDSEYESLYRNIL--PELDLILWV 121 >gi|227548795|ref|ZP_03978844.1| GTP-binding protein Era [Corynebacterium lipophiloflavum DSM 44291] gi|227079125|gb|EEI17088.1| GTP-binding protein Era [Corynebacterium lipophiloflavum DSM 44291] Length = 307 Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 1/61 (1%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R+G+ + +G N GKS+L NAL + +AI+ D P TTR + ++ E V + DT G Sbjct: 13 RSGF-VSFVGRPNTGKSTLTNALVGEKIAIMADQPETTRHPIRGIINREDAQVIVVDTPG 71 Query: 277 I 277 + Sbjct: 72 V 72 >gi|241759164|ref|ZP_04757272.1| putative tRNA modification GTPase TrmE [Neisseria flavescens SK114] gi|241320583|gb|EER56860.1| putative tRNA modification GTPase TrmE [Neisseria flavescens SK114] Length = 145 Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust. Identities = 19/39 (48%), Positives = 28/39 (71%) Query: 402 LDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 +++ AE+LRLA + +ITG + LL +IFS+FCIGK Sbjct: 107 IELFAEHLRLAQNACSEITGEFTADDLLGVIFSRFCIGK 145 >gi|110004378|emb|CAK98716.1| probable gtp-binding protein era [Spiroplasma citri] Length = 294 Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust. Identities = 34/97 (35%), Positives = 50/97 (51%), Gaps = 3/97 (3%) Query: 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGYLVKISDT 274 I++G+ + I+G N GKS+L N + VAIVT TTR+ + I D E +V DT Sbjct: 3 IKSGF-VAIVGRPNVGKSTLLNTILNNKVAIVTAKAQTTRNRIQGIYNDQESQIV-FMDT 60 Query: 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK 311 GI + + + K K + AD+IL L N + Sbjct: 61 PGIHKAHNEMGKFMNKVALSATKAADVILFLAPANER 97 >gi|21263583|sp|Q8YYD8|ERA_NOSS1 RecName: Full=GTPase Era Length = 324 Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 3/90 (3%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-IDLDLEGYLVKISDTA 275 ++G+ I I+G N GKS+L N L + +AI + + TTR+ L I E L+ + DT Sbjct: 31 KSGF-IGIIGRPNVGKSTLMNQLVGQKIAITSPVAQTTRNRLRGIVTTPEAQLIFV-DTP 88 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLL 305 GI + + + +K L +E+ D++L + Sbjct: 89 GIHKPHHQLGEVLVKNAKLAIESVDVVLFV 118 >gi|17228407|ref|NP_484955.1| GTP-binding protein Era [Nostoc sp. PCC 7120] gi|17130258|dbj|BAB72869.1| GTP-binding protein [Nostoc sp. PCC 7120] Length = 337 Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 3/90 (3%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLT-IDLDLEGYLVKISDTA 275 ++G+ I I+G N GKS+L N L + +AI + + TTR+ L I E L+ + DT Sbjct: 44 KSGF-IGIIGRPNVGKSTLMNQLVGQKIAITSPVAQTTRNRLRGIVTTPEAQLIFV-DTP 101 Query: 276 GIRETDDIVEKEGIKRTFLEVENADLILLL 305 GI + + + +K L +E+ D++L + Sbjct: 102 GIHKPHHQLGEVLVKNAKLAIESVDVVLFV 131 >gi|302416193|ref|XP_003005928.1| nucleolar GTP-binding protein [Verticillium albo-atrum VaMs.102] gi|261355344|gb|EEY17772.1| nucleolar GTP-binding protein [Verticillium albo-atrum VaMs.102] Length = 523 Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 2/84 (2%) Query: 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG 276 R + ++G+ N GKSS+ N L K VA V IPG T+ I L YL+ Sbjct: 300 RKQISVGLIGYPNVGKSSIVNTLRSKKVATVAPIPGETKVWQYITLTKRIYLIDCPGIVP 359 Query: 277 IRETDDIVEKEGIKRTFLEVENAD 300 +TD ++ + R + VEN D Sbjct: 360 PSQTD--TPEDILLRGVVRVENVD 381 >gi|171779428|ref|ZP_02920392.1| hypothetical protein STRINF_01273 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282045|gb|EDT47476.1| hypothetical protein STRINF_01273 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 309 Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives