HHsearch alignment for GI: 254780810 and conserved domain: CHL00059
>CHL00059 atpA ATP synthase CF1 alpha subunit.
Probab=100.00 E-value=0 Score=592.86 Aligned_cols=397 Identities=16% Similarity=0.120 Sum_probs=346.1
Q ss_pred CCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCEEEEECCCC----CCCCCCCCEEECC
Q ss_conf 998999999998389885766678999999987520587489999985404770267504548----6666556046010
Q gi|254780810|r 12 KSPTKLLAFAESLEIENANVMRKQELMFSILKVLSGRDVEIIGEGVIEVLQDGFGFLRSPDAN----YLAGPDDIYVSPS 87 (423)
Q Consensus 12 ~~l~EL~eiAkelgIe~~~~l~K~eLI~~Il~~~~~~~g~~~~eGvLEIl~dGyGFLR~~~~~----yl~~~~DiyVs~s 87 (423)
T Consensus 4 ~~~~ei~~~i~~-~i~~~~~~~~---~~e~G~V~~v~DGia~v~GL~~~~---~~Elv~f~~g~~G~vlnLe~~~vg~vl 76 (501)
T CHL00059 4 IRPDEISNIIRE-RIEQYNREVK---IVNTGTVLQVGDGIARIYGLDEVM---AGELVEFEEGTIGIALNLESNNVGVVL 76 (501)
T ss_pred CCHHHHHHHHHH-HHHHCCCCCC---CEEEEEEEEECCCEEEEECCCCCC---CCCEEEECCCCEEEEEECCCCCEEEEE
T ss_conf 899999999999-9983587775---203479999706279982673125---586499689987999843788069999
Q ss_pred CCCCCCCCCCCEEEEEEEECCCCCCCCCCEEECCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 00012212598799988624688876300022225568878851244300020001122343247786532136888998
Q gi|254780810|r 88 QIKSFSLKTGDTVEGSIRAPREGERYFALLKVNAINFDVPERVRNKIHFDNLTPLYPDKRFNMELNNPENKDISSRVIDL 167 (423)
Q Consensus 88 lir~f~Lr~GD~V~g~~r~~~~~~~~~~L~rV~~vnG~~~d~~~~~~~f~~l~p~~p~~~i~le~~~~~p~~~~~~~id~ 167 (423)
T Consensus 77 lg~~~~i~eG~~V~~TG~~l~VPVG~~lLGRVvd~LG~PiDgkg~i~~~~~~pie~~aP~~~~R~~V~epL~TGIkaID~ 156 (501)
T CHL00059 77 MGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVVNALAKPIDGKGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDS 156 (501)
T ss_pred ECCCCCCCCCCEEEECCCEEEEECCHHHCCCEECCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEC
T ss_conf 76987768999888579724774575231474068775447999889875010437997850446667423234211100
Q ss_pred HHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH-------CCEEEECCCCCCHH
Q ss_conf 86551023122204877878999999999986118864699995087878999999840-------34278236678888
Q gi|254780810|r 168 IAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV-------QGEVISSTFDESAA 240 (423)
Q Consensus 168 ~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~-------~~~vv~st~d~~~~ 240 (423)
T Consensus 157 l~PiGrGQR~lI~Gd~gvGKTtl~~d~Iin--qk~~~vicVyvaIGeR~reV~~~i~~l~~~gam~~TvvV~Atadepa~ 234 (501)
T CHL00059 157 MIPIGRGQRELIIGDRQTGKTAVATDTILN--QKGQNVICVYVAIGQKASSVAQVVTTLQERGAMEYTIVVAETADSPAT 234 (501)
T ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHHHH--HCCCCCEEEEEEEEEEHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHH
T ss_conf 367667756677557884477999999985--246884899998556277899999999756971036999617999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHCHHHHHCCCC-CC--CCCCC
Q ss_conf 9999999999999999977992899981638987762001366777677-75202466504687522577-77--77850
Q gi|254780810|r 241 RHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILT-GGVDANALQRPKRFFGAARN-IK--EGGSL 316 (423)
Q Consensus 241 ~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~-gg~~~~~l~~~~~~~~~ar~-~~--~~Gs~ 316 (423)
T Consensus 235 lr~~Apyaa~aIAEyFrdqGkdVLlv~DdLTr~A~A~REisLllgrPPgregYPgdVFylhsrLlERa~kl~~~~ggGSi 314 (501)
T CHL00059 235 LQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSQLGEGSM 314 (501)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEE
T ss_conf 99999999999999999779828999868269889999989864899976678962887857898776505789998847
Q ss_pred EEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCH
Q ss_conf 01211201267655413889885226607898087884799974053354221015519999999999999996126937
Q gi|254780810|r 317 TIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTRKEDLLVERQDLQKVFMLRRIVSSMNSS 396 (423)
Q Consensus 317 T~~~t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR~~~~l~~~~~~~~~~~~r~~l~~~~~~ 396 (423)
T Consensus 315 Talpivet~-~~D~s~yIptnviSItDGqI~L~~~Lf~~G~~PAIdvg~SVSRVG~~aq~k~~k~va~~lrl~laq~~el 393 (501)
T CHL00059 315 TALPIVETQ-SGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAEL 393 (501)
T ss_pred EEEEEEEEC-CCCCCCCCCHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 888899823-8864555541044405742998565552777743454555112561767899999877879999989999
Q ss_pred HHHHHHHHHH--------HCCCCHHHHHHH
Q ss_conf 8999999984--------028998999986
Q gi|254780810|r 397 DAIEFLIDKL--------KQTKDNKDFFYS 418 (423)
Q Consensus 397 e~~~~l~~~~--------~~~~~n~e~l~~ 418 (423)
T Consensus 394 ~~f~~f~~~ld~~t~~~l~rg~r~~e~lkQ 423 (501)
T CHL00059 394 EAFAQFASDLDKATQNQLARGQRLRELLKQ 423 (501)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 999986233599999999989999998678