HHsearch alignment for GI: 254780810 and conserved domain: COG0056

>COG0056 AtpA F0F1-type ATP synthase, alpha subunit [Energy production and conversion].
Probab=100.00  E-value=0  Score=499.47  Aligned_cols=395  Identities=20%  Similarity=0.169  Sum_probs=341.9

Q ss_pred             CCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCEEEEECCCC----CCCCCCCCEEECC
Q ss_conf             998999999998389885766678999999987520587489999985404770267504548----6666556046010
Q gi|254780810|r   12 KSPTKLLAFAESLEIENANVMRKQELMFSILKVLSGRDVEIIGEGVIEVLQDGFGFLRSPDAN----YLAGPDDIYVSPS   87 (423)
Q Consensus        12 ~~l~EL~eiAkelgIe~~~~l~K~eLI~~Il~~~~~~~g~~~~eGvLEIl~dGyGFLR~~~~~----yl~~~~DiyVs~s   87 (423)
T Consensus         3 ~~~~ei~~~i~~-~i~~~~~~~---~~~~~g~V~sv~DgIa~v~Gl~~~~~---~E~~ef~~~v~G~alnle~d~VG~vi   75 (504)
T COG0056           3 LNPTEISSLIKQ-QIENFDVEA---EVKEVGTVISVGDGIARVSGLENVMA---GELVEFPGGVKGMALNLEEDSVGAVI   75 (504)
T ss_pred             CCHHHHHHHHHH-HHHHCCHHH---HHHCCCEEEEEECCEEEEECCCHHHC---CCEEEECCCCEEEEEECCCCCEEEEE
T ss_conf             867889999999-997125344---32116449997254699944743532---84599169937999850324246999


Q ss_pred             CCCCCCCCCCCEEEEEEEECCCCCCCCCCEEECCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             00012212598799988624688876300022225568878851244300020001122343247786532136888998
Q gi|254780810|r   88 QIKSFSLKTGDTVEGSIRAPREGERYFALLKVNAINFDVPERVRNKIHFDNLTPLYPDKRFNMELNNPENKDISSRVIDL  167 (423)
Q Consensus        88 lir~f~Lr~GD~V~g~~r~~~~~~~~~~L~rV~~vnG~~~d~~~~~~~f~~l~p~~p~~~i~le~~~~~p~~~~~~~id~  167 (423)
T Consensus        76 ~g~~~~i~eG~~v~~Tg~i~~Vpvg~~llGRVVn~lG~pidgkg~i~~~~~~~~e~~Apgv~~RksV~ePlqTGikaIDa  155 (504)
T COG0056          76 LGDYSDIKEGDEVKRTGRILEVPVGEELLGRVVDALGNPIDGKGPIDATKTRPVEKKAPGVMDRKSVNEPLQTGIKAIDA  155 (504)
T ss_pred             ECCCCCCCCCCEEEEECCEEEEECCHHHCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHH
T ss_conf             66976645786788507568876356651405668898268989754233573302078503044238334420577764


Q ss_pred             HHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH-------CCEEEECCCCCCHH
Q ss_conf             86551023122204877878999999999986118864699995087878999999840-------34278236678888
Q gi|254780810|r  168 IAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV-------QGEVISSTFDESAA  240 (423)
Q Consensus       168 ~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~-------~~~vv~st~d~~~~  240 (423)
T Consensus       156 miPIGRGQRELIIGDRQTGKTaIAidtI--iNQk~~~v~CIYVAIGQK~stva~vv~tL~e~gAm~yTiVV~AsASd~a~  233 (504)
T COG0056         156 LIPIGRGQRELIIGDRQTGKTAIAIDTI--INQKGSGVKCIYVAIGQKRSTVANVVRTLEEHGAMDYTIVVAASASDSAP  233 (504)
T ss_pred             HCCCCCCCEEEEECCCCCCCCHHHHHHH--HHCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHH
T ss_conf             0565788337875157678311027889--83556894799998154377899999999975975133999814776235


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCC-----CCCCCCCCCCCCHHHHHHCHHHHHCCCCCCCCCC
Q ss_conf             99999999999999999779928999816389877620013-----6677767775202466504687522577777785
Q gi|254780810|r  241 RHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLM-----PSSGKILTGGVDANALQRPKRFFGAARNIKEGGS  315 (423)
Q Consensus       241 ~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~-----~~~g~~~~gg~~~~~l~~~~~~~~~ar~~~~~Gs  315 (423)
T Consensus       234 lqYLaPy~g~a~aE~f~~~G~dvLIVyDDLsKhA~AYReiSLLlrRPPGREAyPGDVFYl---HSrLLERAakl~~e~g~  310 (504)
T COG0056         234 LQYLAPYAGCAMAEYFRDNGKDVLIVYDDLSKHAVAYREISLLLRRPPGREAYPGDVFYL---HSRLLERAAKLSDELGG  310 (504)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEH---HHHHHHHHHHHCCCCCC
T ss_conf             555302255588999986597489996074188999999999836999865788864001---17999998862024588


Q ss_pred             CEEEEEEEECCCC-CCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCC
Q ss_conf             0012112012676-554138898852266078980878847999740533542210155199999999999999961269
Q gi|254780810|r  316 LTIIGTALVDTGS-RMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTRKEDLLVERQDLQKVFMLRRIVSSMN  394 (423)
Q Consensus       316 ~T~~~t~lvetg~-~~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR~~~~l~~~~~~~~~~~~r~~l~~~~  394 (423)
T Consensus       311 GSiTALPIIETqagDvSAyIpTNVISITDGQIfl~t~LFn~G~rPAInvGlSVSRvGssAQ~kamkkvag~lrl~laqYr  390 (504)
T COG0056         311 GSITALPIIETQAGDVSAYIPTNVISITDGQIFLETDLFNAGIRPAINVGLSVSRVGSAAQIKAMKKVAGSLRLILAQYR  390 (504)
T ss_pred             CCEEEEEEEEECCCCEEEECCCCEEEECCCCEEEEHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             72475116886168662340354588407707850646646888532578426516518899999999878999999999


Q ss_pred             CHHHHHHHH--------HHHHCCCCHHHHHHH
Q ss_conf             378999999--------984028998999986
Q gi|254780810|r  395 SSDAIEFLI--------DKLKQTKDNKDFFYS  418 (423)
Q Consensus       395 ~~e~~~~l~--------~~~~~~~~n~e~l~~  418 (423)
T Consensus       391 el~afsqf~sdLd~~T~~~l~~G~r~~ellkQ  422 (504)
T COG0056         391 ELEAFSQFGSDLDKATRKQLERGKRLTELLKQ  422 (504)
T ss_pred             HHHHHHHHHHHHCHHHHHHHHCCHHHHHHHCC
T ss_conf             89998754002179899999713799999667