HHsearch alignment for GI: 254780810 and conserved domain: COG0056
>COG0056 AtpA F0F1-type ATP synthase, alpha subunit [Energy production and conversion].
Probab=100.00 E-value=0 Score=499.47 Aligned_cols=395 Identities=20% Similarity=0.169 Sum_probs=341.9
Q ss_pred CCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCEEEEECCCC----CCCCCCCCEEECC
Q ss_conf 998999999998389885766678999999987520587489999985404770267504548----6666556046010
Q gi|254780810|r 12 KSPTKLLAFAESLEIENANVMRKQELMFSILKVLSGRDVEIIGEGVIEVLQDGFGFLRSPDAN----YLAGPDDIYVSPS 87 (423)
Q Consensus 12 ~~l~EL~eiAkelgIe~~~~l~K~eLI~~Il~~~~~~~g~~~~eGvLEIl~dGyGFLR~~~~~----yl~~~~DiyVs~s 87 (423)
T Consensus 3 ~~~~ei~~~i~~-~i~~~~~~~---~~~~~g~V~sv~DgIa~v~Gl~~~~~---~E~~ef~~~v~G~alnle~d~VG~vi 75 (504)
T COG0056 3 LNPTEISSLIKQ-QIENFDVEA---EVKEVGTVISVGDGIARVSGLENVMA---GELVEFPGGVKGMALNLEEDSVGAVI 75 (504)
T ss_pred CCHHHHHHHHHH-HHHHCCHHH---HHHCCCEEEEEECCEEEEECCCHHHC---CCEEEECCCCEEEEEECCCCCEEEEE
T ss_conf 867889999999-997125344---32116449997254699944743532---84599169937999850324246999
Q ss_pred CCCCCCCCCCCEEEEEEEECCCCCCCCCCEEECCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 00012212598799988624688876300022225568878851244300020001122343247786532136888998
Q gi|254780810|r 88 QIKSFSLKTGDTVEGSIRAPREGERYFALLKVNAINFDVPERVRNKIHFDNLTPLYPDKRFNMELNNPENKDISSRVIDL 167 (423)
Q Consensus 88 lir~f~Lr~GD~V~g~~r~~~~~~~~~~L~rV~~vnG~~~d~~~~~~~f~~l~p~~p~~~i~le~~~~~p~~~~~~~id~ 167 (423)
T Consensus 76 ~g~~~~i~eG~~v~~Tg~i~~Vpvg~~llGRVVn~lG~pidgkg~i~~~~~~~~e~~Apgv~~RksV~ePlqTGikaIDa 155 (504)
T COG0056 76 LGDYSDIKEGDEVKRTGRILEVPVGEELLGRVVDALGNPIDGKGPIDATKTRPVEKKAPGVMDRKSVNEPLQTGIKAIDA 155 (504)
T ss_pred ECCCCCCCCCCEEEEECCEEEEECCHHHCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHH
T ss_conf 66976645786788507568876356651405668898268989754233573302078503044238334420577764
Q ss_pred HHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH-------CCEEEECCCCCCHH
Q ss_conf 86551023122204877878999999999986118864699995087878999999840-------34278236678888
Q gi|254780810|r 168 IAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV-------QGEVISSTFDESAA 240 (423)
Q Consensus 168 ~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~-------~~~vv~st~d~~~~ 240 (423)
T Consensus 156 miPIGRGQRELIIGDRQTGKTaIAidtI--iNQk~~~v~CIYVAIGQK~stva~vv~tL~e~gAm~yTiVV~AsASd~a~ 233 (504)
T COG0056 156 LIPIGRGQRELIIGDRQTGKTAIAIDTI--INQKGSGVKCIYVAIGQKRSTVANVVRTLEEHGAMDYTIVVAASASDSAP 233 (504)
T ss_pred HCCCCCCCEEEEECCCCCCCCHHHHHHH--HHCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHH
T ss_conf 0565788337875157678311027889--83556894799998154377899999999975975133999814776235
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCC-----CCCCCCCCCCCCHHHHHHCHHHHHCCCCCCCCCC
Q ss_conf 99999999999999999779928999816389877620013-----6677767775202466504687522577777785
Q gi|254780810|r 241 RHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLM-----PSSGKILTGGVDANALQRPKRFFGAARNIKEGGS 315 (423)
Q Consensus 241 ~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~-----~~~g~~~~gg~~~~~l~~~~~~~~~ar~~~~~Gs 315 (423)
T Consensus 234 lqYLaPy~g~a~aE~f~~~G~dvLIVyDDLsKhA~AYReiSLLlrRPPGREAyPGDVFYl---HSrLLERAakl~~e~g~ 310 (504)
T COG0056 234 LQYLAPYAGCAMAEYFRDNGKDVLIVYDDLSKHAVAYREISLLLRRPPGREAYPGDVFYL---HSRLLERAAKLSDELGG 310 (504)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEH---HHHHHHHHHHHCCCCCC
T ss_conf 555302255588999986597489996074188999999999836999865788864001---17999998862024588
Q ss_pred CEEEEEEEECCCC-CCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 0012112012676-554138898852266078980878847999740533542210155199999999999999961269
Q gi|254780810|r 316 LTIIGTALVDTGS-RMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTRKEDLLVERQDLQKVFMLRRIVSSMN 394 (423)
Q Consensus 316 ~T~~~t~lvetg~-~~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR~~~~l~~~~~~~~~~~~r~~l~~~~ 394 (423)
T Consensus 311 GSiTALPIIETqagDvSAyIpTNVISITDGQIfl~t~LFn~G~rPAInvGlSVSRvGssAQ~kamkkvag~lrl~laqYr 390 (504)
T COG0056 311 GSITALPIIETQAGDVSAYIPTNVISITDGQIFLETDLFNAGIRPAINVGLSVSRVGSAAQIKAMKKVAGSLRLILAQYR 390 (504)
T ss_pred CCEEEEEEEEECCCCEEEECCCCEEEECCCCEEEEHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 72475116886168662340354588407707850646646888532578426516518899999999878999999999
Q ss_pred CHHHHHHHH--------HHHHCCCCHHHHHHH
Q ss_conf 378999999--------984028998999986
Q gi|254780810|r 395 SSDAIEFLI--------DKLKQTKDNKDFFYS 418 (423)
Q Consensus 395 ~~e~~~~l~--------~~~~~~~~n~e~l~~ 418 (423)
T Consensus 391 el~afsqf~sdLd~~T~~~l~~G~r~~ellkQ 422 (504)
T COG0056 391 ELEAFSQFGSDLDKATRKQLERGKRLTELLKQ 422 (504)
T ss_pred HHHHHHHHHHHHCHHHHHHHHCCHHHHHHHCC
T ss_conf 89998754002179899999713799999667