HHsearch alignment for GI: 254780810 and conserved domain: COG0467
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms].
Probab=98.24 E-value=1.8e-05 Score=55.10 Aligned_cols=186 Identities=22% Similarity=0.223 Sum_probs=107.8
Q ss_pred CCCHHHHHHHHHHH--HHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH--------
Q ss_conf 32136888998865--51023122204877878999999999986118864699995087878999999840--------
Q gi|254780810|r 157 NKDISSRVIDLIAP--IGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV-------- 226 (423)
Q Consensus 157 p~~~~~~~id~~~p--ig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~-------- 226 (423)
T Consensus 4 ~~~TGI~glD~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~--ge~vlyvs~~e~~~~l~~~~~~~g~d~~~~~ 81 (260)
T COG0467 4 RIPTGIPGLDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGARE--GEPVLYVSTEESPEELLENARSFGWDLEVYI 81 (260)
T ss_pred CCCCCCCCHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHC--CCEEEEEEEECCHHHHHHHHHHCCCCHHHHH
T ss_conf 56899741888836898899789999389986899999999977626--9858999920698999999988099778975
Q ss_pred -CCE--EEECCCCCCHHH------HHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCCCCCCHHHH
Q ss_conf -342--782366788889------99999999999999997799289998163898776200136677767775202466
Q gi|254780810|r 227 -QGE--VISSTFDESAAR------HVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILTGGVDANAL 297 (423)
Q Consensus 227 -~~~--vv~st~d~~~~~------~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~gg~~~~~l 297 (423)
T Consensus 82 ~~g~l~i~d~~~~~~~~~~~~~~~~~~~~~l~~~I~~~~~~~~-~~~~ViDsi~~~~~~~~~~~---------------~ 145 (260)
T COG0467 82 EKGKLAILDAFLSEKGLVSIVVGDPLDLEELLDRIREIVEKEG-ADRVVIDSITELTLYLNDPA---------------L 145 (260)
T ss_pred HCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC-CCEEEEECCHHHHHHCCCHH---------------H
T ss_conf 4440687631211125420104665228999999999998628-98899966307766527825---------------7
Q ss_pred HHCHHHHHC-CCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHCCCCC-CCCCCCC
Q ss_conf 504687522-57777778500121120126765541388988522660789808788479997-4053354
Q gi|254780810|r 298 QRPKRFFGA-ARNIKEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFP-AMDIIKS 366 (423)
Q Consensus 298 ~~~~~~~~~-ar~~~~~Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la~~~~~P-AId~~~S 366 (423)
T Consensus 146 ~--r~~~~~l~~~~~~~~-~t~~~~~~~~~~~~~~~---~~~~~~vdgvI~l~~~~~~~~~~r~~~~i~k~ 210 (260)
T COG0467 146 V--RRILLLLKRFLKKLG-VTSLLTTEAPVEERGES---GVEEYIVDGVIRLDLKEIEGGGDRRYLRILKM 210 (260)
T ss_pred H--HHHHHHHHHHHHHCC-EEEEEEECCCCCCCCCC---CCEEEEEEEEEEEEEEECCCCEEEEEEEEEEC
T ss_conf 8--999999998765068-48999974433466656---61421689999997772257248889999834