HHsearch alignment for GI: 254780810 and conserved domain: COG1155
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion].
Probab=100.00 E-value=4.9e-43 Score=302.32 Aligned_cols=262 Identities=19% Similarity=0.227 Sum_probs=223.1
Q ss_pred CCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 43000200011223432477865321368889988655102312220487787899999999998611886469999508
Q gi|254780810|r 134 IHFDNLTPLYPDKRFNMELNNPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLID 213 (423)
Q Consensus 134 ~~f~~l~p~~p~~~i~le~~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~lig 213 (423)
T Consensus 184 ~~m~~~WPVR~~rp~~eKl~p~~Pl~TGqRviDt~FPvaKGGTaaiPGpFGsGKTV~qh~laK~sdad----iVVyigCG 259 (588)
T COG1155 184 VQMMTTWPVRKARPVKRKLPPEIPLVTGQRVIDTLFPVAKGGTAAVPGPFGSGKTVSQHTLSKLADGD----IVIYVGCG 259 (588)
T ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEHHHCCCCCCCCCCCCCCCCCCCEEHHHHHHHHCCCC----EEEEEECC
T ss_conf 88887266467764102489877521254231010211157651266888898375243565640688----89998157
Q ss_pred CCHHHHHHHHHHH--------------CCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHC
Q ss_conf 7878999999840--------------34278236678888999999999999999997799289998163898776200
Q gi|254780810|r 214 ERPEEVTDMQRSV--------------QGEVISSTFDESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNV 279 (423)
Q Consensus 214 Er~~ev~e~~~~~--------------~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~ 279 (423)
T Consensus 260 ERGNEmtevL~eFPeL~Dp~tg~~lm~RT~liaNTSnMPVAAREasIYtGiTiaEY~RDmGy~v~lmADSTSRWAEAlRE 339 (588)
T COG1155 260 ERGNEMTEVLQEFPELKDPNTGQPLMDRTVLIANTSNMPVAAREASIYTGITIAEYYRDMGYDVALMADSTSRWAEALRE 339 (588)
T ss_pred CCCCHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_conf 76523899998686666899997120003676257666188866435322319998876302567750138999999998
Q ss_pred CCCCCCCCCCCCCCHHHH-HHCHHHHHCCCCCCC--C----CCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHH
Q ss_conf 136677767775202466-504687522577777--7----850012112012676554138898852266078980878
Q gi|254780810|r 280 LMPSSGKILTGGVDANAL-QRPKRFFGAARNIKE--G----GSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKI 352 (423)
Q Consensus 280 ~~~~~g~~~~gg~~~~~l-~~~~~~~~~ar~~~~--~----Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~l 352 (423)
T Consensus 340 isgRleEmPgeegyPaYL~srlA~fYERaG~v~~~~~~~r~GsvtV~gaV-SPpGGdfSEPVtq~Tlriv~vFw~Ld~~l 418 (588)
T COG1155 340 ISGRLEEMPGEEGYPAYLGSRLAEFYERAGRVRLVSPEERFGSITVIGAV-SPPGGDFSEPVTQNTLRVVRVFWALDAAL 418 (588)
T ss_pred HHCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEECCCCCCEEEEEEECCC-CCCCCCCCCCCCHHEEEEEEEECCCCHHH
T ss_conf 73350028864444167899999999854723422788625899982577-89999847652110035566420014445
Q ss_pred HHCCCCCCCCCCCCCCCCHHHC-------CCHHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 8479997405335422101551-------99999999999999961269378999
Q gi|254780810|r 353 ADKRIFPAMDIIKSGTRKEDLL-------VERQDLQKVFMLRRIVSSMNSSDAIE 400 (423)
Q Consensus 353 a~~~~~PAId~~~S~sR~~~~l-------~~~~~~~~~~~~r~~l~~~~~~e~~~ 400 (423)
T Consensus 419 a~~rhfPaInwl~syS~Y~~~~~~~~~~~v~~~~~~~r~~a~~~Lq~e~elqeiv 473 (588)
T COG1155 419 ANRRHFPSINWLNSYSLYTEDLRSWYDENVSPEWGALRDQAMEILQRESELQEIV 473 (588)
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 3232376567377799989888877640258238999999999988779999999