HHsearch alignment for GI: 254780810 and conserved domain: COG1157
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion].
Probab=100.00 E-value=0 Score=662.53 Aligned_cols=328 Identities=23% Similarity=0.228 Sum_probs=305.9
Q ss_pred CCCCCCCCCCEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEECCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCC
Q ss_conf 48666655604601000012212598799988624688876300022225568878851244300020001122343247
Q gi|254780810|r 73 ANYLAGPDDIYVSPSQIKSFSLKTGDTVEGSIRAPREGERYFALLKVNAINFDVPERVRNKIHFDNLTPLYPDKRFNMEL 152 (423)
Q Consensus 73 ~~yl~~~~DiyVs~slir~f~Lr~GD~V~g~~r~~~~~~~~~~L~rV~~vnG~~~d~~~~~~~f~~l~p~~p~~~i~le~ 152 (423)
T Consensus 62 aEVvgf~~~~~~L~p~~~~~gv~~g~~V~~~~~~~~v~~g~~lLGRVld~~G~plDg~~~~~~~~~~~l~~~pp~pm~R~ 141 (441)
T COG1157 62 AEVVGFNEERVLLMPFEPVEGVSPGAEVVPTGRPLSVPVGDALLGRVLDGLGRPLDGGGLPDGTERRPLDAPPPNPLKRR 141 (441)
T ss_pred EEEEEECCCEEEEECCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCC
T ss_conf 79999728768996267655677887897459754236686665410066888577899998763231457997821026
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH------
Q ss_conf 78653213688899886551023122204877878999999999986118864699995087878999999840------
Q gi|254780810|r 153 NNPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV------ 226 (423)
Q Consensus 153 ~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~------ 226 (423)
T Consensus 142 ~I~~~l~tGVRaIDgllT~G~GQRiGIFAgsGVGKStLLgMiar~t~aD----v~ViaLIGERGREVrEFIE~~Lg~egl 217 (441)
T COG1157 142 PIEEPLDTGVRAIDGLLTCGKGQRIGIFAGSGVGKSTLLGMIARNTEAD----VNVIALIGERGREVREFIEKDLGEEGL 217 (441)
T ss_pred CCCCCCCCCCEEEECCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCC----EEEEEEEECCCHHHHHHHHHHCCHHHC
T ss_conf 5466454561444010022467467887169986899999996246698----799997606640599999986023303
Q ss_pred -CCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHCHHHH
Q ss_conf -342782366788889999999999999999977992899981638987762001366777677-752024665046875
Q gi|254780810|r 227 -QGEVISSTFDESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILT-GGVDANALQRPKRFF 304 (423)
Q Consensus 227 -~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~-gg~~~~~l~~~~~~~ 304 (423)
T Consensus 218 ~rsViVvATSD~s~l~R~~aa~~At~IAEyFRDqG~~VLL~mDSlTRfA~AqREI~LA~GEpP~~kGYppSVF~~LP~Ll 297 (441)
T COG1157 218 KRSVVVVATSDESALMRLKAAFTATTIAEYFRDQGKRVLLIMDSLTRFAMAQREIGLAAGEPPATKGYPPSVFSELPRLL 297 (441)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 52699997898898999888999999999998679859999613889999998888752899866898955988748988
Q ss_pred HCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHHHHHH
Q ss_conf 22577777785001211201267655413889885226607898087884799974053354221015519999999999
Q gi|254780810|r 305 GAARNIKEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTRKEDLLVERQDLQKVF 384 (423)
Q Consensus 305 ~~ar~~~~~Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR~~~~l~~~~~~~~~~ 384 (423)
T Consensus 298 ERaG~~-~~GsITafYTVLve-GDD~~dPiaD~~RsILDGHIvLsR~LA~~ghyPaIdvl~SiSRvm~~i~~~~h~~~a~ 375 (441)
T COG1157 298 ERAGNG-DKGSITAFYTVLVE-GDDMNDPIADEVRSILDGHIVLSRALAEAGHYPAIDVLASISRVMPQIVSEEHRKAAR 375 (441)
T ss_pred HHCCCC-CCCCEEEEEEEEEE-CCCCCCCHHHHHHHHCCCEEEEEHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 604899-99817899999850-6888885045666422652897386885599997446777877766408999999999
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHCCC
Q ss_conf 99999612693789999999840289
Q gi|254780810|r 385 MLRRIVSSMNSSDAIEFLIDKLKQTK 410 (423)
Q Consensus 385 ~~r~~l~~~~~~e~~~~l~~~~~~~~ 410 (423)
T Consensus 376 ~~r~lls~y~e~edL---i-~iGaY~ 397 (441)
T COG1157 376 RLRQLLSRYEENEDL---I-RIGAYQ 397 (441)
T ss_pred HHHHHHHHHHHHHHH---H-HHCCCC
T ss_conf 999999998877899---9-863856