HHsearch alignment for GI: 254780810 and conserved domain: COG1157

>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion].
Probab=100.00  E-value=0  Score=662.53  Aligned_cols=328  Identities=23%  Similarity=0.228  Sum_probs=305.9

Q ss_pred             CCCCCCCCCCEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEECCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCC
Q ss_conf             48666655604601000012212598799988624688876300022225568878851244300020001122343247
Q gi|254780810|r   73 ANYLAGPDDIYVSPSQIKSFSLKTGDTVEGSIRAPREGERYFALLKVNAINFDVPERVRNKIHFDNLTPLYPDKRFNMEL  152 (423)
Q Consensus        73 ~~yl~~~~DiyVs~slir~f~Lr~GD~V~g~~r~~~~~~~~~~L~rV~~vnG~~~d~~~~~~~f~~l~p~~p~~~i~le~  152 (423)
T Consensus        62 aEVvgf~~~~~~L~p~~~~~gv~~g~~V~~~~~~~~v~~g~~lLGRVld~~G~plDg~~~~~~~~~~~l~~~pp~pm~R~  141 (441)
T COG1157          62 AEVVGFNEERVLLMPFEPVEGVSPGAEVVPTGRPLSVPVGDALLGRVLDGLGRPLDGGGLPDGTERRPLDAPPPNPLKRR  141 (441)
T ss_pred             EEEEEECCCEEEEECCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCC
T ss_conf             79999728768996267655677887897459754236686665410066888577899998763231457997821026


Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH------
Q ss_conf             78653213688899886551023122204877878999999999986118864699995087878999999840------
Q gi|254780810|r  153 NNPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV------  226 (423)
Q Consensus       153 ~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~------  226 (423)
T Consensus       142 ~I~~~l~tGVRaIDgllT~G~GQRiGIFAgsGVGKStLLgMiar~t~aD----v~ViaLIGERGREVrEFIE~~Lg~egl  217 (441)
T COG1157         142 PIEEPLDTGVRAIDGLLTCGKGQRIGIFAGSGVGKSTLLGMIARNTEAD----VNVIALIGERGREVREFIEKDLGEEGL  217 (441)
T ss_pred             CCCCCCCCCCEEEECCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCC----EEEEEEEECCCHHHHHHHHHHCCHHHC
T ss_conf             5466454561444010022467467887169986899999996246698----799997606640599999986023303


Q ss_pred             -CCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHCHHHH
Q ss_conf             -342782366788889999999999999999977992899981638987762001366777677-752024665046875
Q gi|254780810|r  227 -QGEVISSTFDESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILT-GGVDANALQRPKRFF  304 (423)
Q Consensus       227 -~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~-gg~~~~~l~~~~~~~  304 (423)
T Consensus       218 ~rsViVvATSD~s~l~R~~aa~~At~IAEyFRDqG~~VLL~mDSlTRfA~AqREI~LA~GEpP~~kGYppSVF~~LP~Ll  297 (441)
T COG1157         218 KRSVVVVATSDESALMRLKAAFTATTIAEYFRDQGKRVLLIMDSLTRFAMAQREIGLAAGEPPATKGYPPSVFSELPRLL  297 (441)
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             52699997898898999888999999999998679859999613889999998888752899866898955988748988


Q ss_pred             HCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHHHHHH
Q ss_conf             22577777785001211201267655413889885226607898087884799974053354221015519999999999
Q gi|254780810|r  305 GAARNIKEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTRKEDLLVERQDLQKVF  384 (423)
Q Consensus       305 ~~ar~~~~~Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR~~~~l~~~~~~~~~~  384 (423)
T Consensus       298 ERaG~~-~~GsITafYTVLve-GDD~~dPiaD~~RsILDGHIvLsR~LA~~ghyPaIdvl~SiSRvm~~i~~~~h~~~a~  375 (441)
T COG1157         298 ERAGNG-DKGSITAFYTVLVE-GDDMNDPIADEVRSILDGHIVLSRALAEAGHYPAIDVLASISRVMPQIVSEEHRKAAR  375 (441)
T ss_pred             HHCCCC-CCCCEEEEEEEEEE-CCCCCCCHHHHHHHHCCCEEEEEHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHH
T ss_conf             604899-99817899999850-6888885045666422652897386885599997446777877766408999999999


Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHCCC
Q ss_conf             99999612693789999999840289
Q gi|254780810|r  385 MLRRIVSSMNSSDAIEFLIDKLKQTK  410 (423)
Q Consensus       385 ~~r~~l~~~~~~e~~~~l~~~~~~~~  410 (423)
T Consensus       376 ~~r~lls~y~e~edL---i-~iGaY~  397 (441)
T COG1157         376 RLRQLLSRYEENEDL---I-RIGAYQ  397 (441)
T ss_pred             HHHHHHHHHHHHHHH---H-HHCCCC
T ss_conf             999999998877899---9-863856