HHsearch alignment for GI: 254780810 and conserved domain: COG1474

>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones].

Probab=97.14  E-value=0.0079  Score=37.72  Aligned_cols=107  Identities=16%  Similarity=0.288  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHHCCCC---EEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEE---ECCCCHHHHHHHHHHHCCEEEECCC
Q ss_conf             888998865510231---2220487787899999999998611886469999---5087878999999840342782366
Q gi|254780810|r  162 SRVIDLIAPIGKGQR---SLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVL---LIDERPEEVTDMQRSVQGEVISSTF  235 (423)
Q Consensus       162 ~~~id~~~pig~gqr---~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~---ligEr~~ev~e~~~~~~~~vv~st~  235 (423)
T Consensus        27 ~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~--------   98 (366)
T COG1474          27 NQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLG--------   98 (366)
T ss_pred             HHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHHC--------
T ss_conf             999999999855899860799889998732899999999973315675799951307878799999999826--------


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHH
Q ss_conf             788889999999999999999977992899981638987762
Q gi|254780810|r  236 DESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAY  277 (423)
Q Consensus       236 d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~  277 (423)
T Consensus        99 -~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~  139 (366)
T COG1474          99 -KVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKD  139 (366)
T ss_pred             -CCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHCCC
T ss_conf             -89976763268999999977741875999976476541546