HHsearch alignment for GI: 254780810 and conserved domain: COG1484
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair].
Probab=93.16 E-value=0.25 Score=27.86 Aligned_cols=45 Identities=20% Similarity=0.336 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 8889988655102312220487787899999999998611886469999
Q gi|254780810|r 162 SRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVL 210 (423)
Q Consensus 162 ~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ 210 (423)
T Consensus 95 ~~~~~~~~~--~~~nl~l~G~~G~GKthLa~Ai~~~l~~~g--~sv~f~ 139 (254)
T COG1484 95 LASLVEFFE--RGENLVLLGPPGVGKTHLAIAIGNELLKAG--ISVLFI 139 (254)
T ss_pred HHHHHHHHC--CCCCEEEECCCCCCHHHHHHHHHHHHHHCC--CEEEEE
T ss_conf 999998732--588289989999879999999999999839--849998