HHsearch alignment for GI: 254780810 and conserved domain: COG2874
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion].
Probab=94.10 E-value=0.45 Score=26.16 Aligned_cols=152 Identities=20% Similarity=0.260 Sum_probs=85.1
Q ss_pred HHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHH---H---------CCE-EEECC---
Q ss_conf 5102312220487787899999999998611886469999508787899999984---0---------342-78236---
Q gi|254780810|r 171 IGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRS---V---------QGE-VISST--- 234 (423)
Q Consensus 171 ig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~---~---------~~~-vv~st--- 234 (423)
T Consensus 25 iP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~--~v~yv-sTe~--T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~~ 99 (235)
T COG2874 25 IPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGY--RVTYV-STEL--TVREFIKQMESLSYDVSDFLLSGRLLFFPVNLE 99 (235)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCC--EEEEE-EECH--HHHHHHHHHHHCCCCCHHHHHCCEEEEEEECCC
T ss_conf 746769999888985488999999998870895--48999-8403--599999988863887168775062689993245
Q ss_pred -CCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCHHHHHCCCCCCCC
Q ss_conf -6788889999999999999999977992899981638987762001366777677752024665046875225777777
Q gi|254780810|r 235 -FDESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILTGGVDANALQRPKRFFGAARNIKEG 313 (423)
Q Consensus 235 -~d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~gg~~~~~l~~~~~~~~~ar~~~~~ 313 (423)
T Consensus 100 ~~~~~~~~~~~~L~~l~~~~k---~~~~dV-iIIDSls~~~~~~--------------~~~~vl----~fm~~~r~l~d~ 157 (235)
T COG2874 100 PVNWGRRSARKLLDLLLEFIK---RWEKDV-IIIDSLSAFATYD--------------SEDAVL----NFMTFLRKLSDL 157 (235)
T ss_pred CCCCCHHHHHHHHHHHHHHHH---HHCCCE-EEEECCCHHHHCC--------------CHHHHH----HHHHHHHHHHHC
T ss_conf 422573778999999975577---523778-9995343776526--------------499999----999999998728
Q ss_pred CCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHH
Q ss_conf 8500121120126765541388988522660789808788
Q gi|254780810|r 314 GSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIA 353 (423)
Q Consensus 314 Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la 353 (423)
T Consensus 158 g-KvIilTvh---p~~l~e~~~~rirs~~d~~l~L~~~~~ 193 (235)
T COG2874 158 G-KVIILTVH---PSALDEDVLTRIRSACDVYLRLRLEEL 193 (235)
T ss_pred C-CEEEEEEC---HHHCCHHHHHHHHHHHHEEEEEEHHHH
T ss_conf 9-78999947---343378999999875202589870231