HHsearch alignment for GI: 254780810 and conserved domain: PRK00080
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed.
Probab=94.47 E-value=0.12 Score=30.02 Aligned_cols=69 Identities=23% Similarity=0.303 Sum_probs=42.3
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 12220487787899999999998611886469999508787899999984034278236678888999999999999999
Q gi|254780810|r 176 RSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSVQGEVISSTFDESAARHVQVAEMVIAKAKC 255 (423)
Q Consensus 176 r~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~~~~vv~st~d~~~~~~~~~a~~a~~~a~~ 255 (423)
T Consensus 53 H~Ll~GPPGlGKTTLA~iiA~E~~~~~---~~tsGP~lek~~DL~~iLt------------------------------- 98 (328)
T PRK00080 53 HVLLYGPPGLGKTTLANIIANEMGVNI---RITSGPALEKAGDLAALLT------------------------------- 98 (328)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCC---EECCCCCCCCHHHHHHHHH-------------------------------
T ss_conf 057658899889999999999868881---5624500167478999996-------------------------------
Q ss_pred HHHCCCCEEEEEECHHHHHHHHHCC
Q ss_conf 9977992899981638987762001
Q gi|254780810|r 256 LVEYGLDVVILLDSITRLCRAYNVL 280 (423)
Q Consensus 256 ~~e~G~dVll~~DslTR~ArA~~~~ 280 (423)
T Consensus 99 --~l~~~dvLFIDEIHRl~~~vEE~ 121 (328)
T PRK00080 99 --NLEEGDVLFIDEIHRLSPVVEEI 121 (328)
T ss_pred --HCCCCCEEEEHHHHHCCHHHHHH
T ss_conf --08878767650653248889988