HHsearch alignment for GI: 254780810 and conserved domain: PRK00080

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed.
Probab=94.47  E-value=0.12  Score=30.02  Aligned_cols=69  Identities=23%  Similarity=0.303  Sum_probs=42.3

Q ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             12220487787899999999998611886469999508787899999984034278236678888999999999999999
Q gi|254780810|r  176 RSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSVQGEVISSTFDESAARHVQVAEMVIAKAKC  255 (423)
Q Consensus       176 r~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~~~~vv~st~d~~~~~~~~~a~~a~~~a~~  255 (423)
T Consensus        53 H~Ll~GPPGlGKTTLA~iiA~E~~~~~---~~tsGP~lek~~DL~~iLt-------------------------------   98 (328)
T PRK00080         53 HVLLYGPPGLGKTTLANIIANEMGVNI---RITSGPALEKAGDLAALLT-------------------------------   98 (328)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHCCCC---EECCCCCCCCHHHHHHHHH-------------------------------
T ss_conf             057658899889999999999868881---5624500167478999996-------------------------------


Q ss_pred             HHHCCCCEEEEEECHHHHHHHHHCC
Q ss_conf             9977992899981638987762001
Q gi|254780810|r  256 LVEYGLDVVILLDSITRLCRAYNVL  280 (423)
Q Consensus       256 ~~e~G~dVll~~DslTR~ArA~~~~  280 (423)
T Consensus        99 --~l~~~dvLFIDEIHRl~~~vEE~  121 (328)
T PRK00080         99 --NLEEGDVLFIDEIHRLSPVVEEI  121 (328)
T ss_pred             --HCCCCCEEEEHHHHHCCHHHHHH
T ss_conf             --08878767650653248889988