HHsearch alignment for GI: 254780810 and conserved domain: PRK04195
>PRK04195 replication factor C large subunit; Provisional.
Probab=93.37 E-value=0.15 Score=29.40 Aligned_cols=38 Identities=34% Similarity=0.513 Sum_probs=28.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEE-ECCCCHHHH
Q ss_conf 2220487787899999999998611886469999-508787899
Q gi|254780810|r 177 SLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVL-LIDERPEEV 219 (423)
Q Consensus 177 ~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~-ligEr~~ev 219 (423)
T Consensus 43 lLL~GPpGvGKTT~a~~lAk~~g~~-----viElNASD~R~~~~ 81 (403)
T PRK04195 43 LLLYGPPGVGKTSLAHALANDYGWE-----VIELNASDQRTKDV 81 (403)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCC-----EEEECCCCCCCHHH
T ss_conf 9988939987999999999984998-----59977101147899