HHsearch alignment for GI: 254780810 and conserved domain: PRK05688
>PRK05688 fliI flagellum-specific ATP synthase; Validated.
Probab=100.00 E-value=0 Score=610.56 Aligned_cols=326 Identities=21% Similarity=0.231 Sum_probs=306.6
Q ss_pred CCCCCCCCCCEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEECCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCC
Q ss_conf 48666655604601000012212598799988624688876300022225568878851244300020001122343247
Q gi|254780810|r 73 ANYLAGPDDIYVSPSQIKSFSLKTGDTVEGSIRAPREGERYFALLKVNAINFDVPERVRNKIHFDNLTPLYPDKRFNMEL 152 (423)
Q Consensus 73 ~~yl~~~~DiyVs~slir~f~Lr~GD~V~g~~r~~~~~~~~~~L~rV~~vnG~~~d~~~~~~~f~~l~p~~p~~~i~le~ 152 (423)
T Consensus 67 aEVVgf~~~~v~l~p~g~~~Gi~~G~~V~~~g~~~~VpVG~~lLGRVvd~lG~PlDg~g~i~~~~~~p~~~~~p~pl~R~ 146 (451)
T PRK05688 67 AEVMGFSGDKVYLMPVGSVAGIAPGARVVPLADTGRLPMGMSMLGRVLDGAGRALDGKGGMKAEDWVPMDGPTINPLNRD 146 (451)
T ss_pred EEEEEECCCEEEEEECCCCCCCCCCCEEEECCCCCEEECCCCCCCCEECCCCCCCCCCCCCCCCCEEECCCCCCCHHHCC
T ss_conf 99922549979999887877889999999689987777582535888887764268999989873455668998835517
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH------
Q ss_conf 78653213688899886551023122204877878999999999986118864699995087878999999840------
Q gi|254780810|r 153 NNPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV------ 226 (423)
Q Consensus 153 ~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~------ 226 (423)
T Consensus 147 ~i~epl~TGIraID~l~pigrGQR~gIfggsGvGKS~Ll~~i~r~~~ad----v~Vi~lIGERgrEv~efi~~~l~~~~~ 222 (451)
T PRK05688 147 PISEPLDVGIRSINGLLTVGRGQRLGLFAGTGVGKSVLLGMMTRFTEAD----IIVVGLIGERGREVKEFIEHILGEEGL 222 (451)
T ss_pred CCCCCEECCCEEEECCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCC----EEEEEEEEEEHHHHHHHHHHHHHCCCC
T ss_conf 8786200384688454672467564210488986899999998852798----699996127759999999998515674
Q ss_pred -CCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHCHHHH
Q ss_conf -342782366788889999999999999999977992899981638987762001366777677-752024665046875
Q gi|254780810|r 227 -QGEVISSTFDESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILT-GGVDANALQRPKRFF 304 (423)
Q Consensus 227 -~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~-gg~~~~~l~~~~~~~ 304 (423)
T Consensus 223 ~~svvV~atsd~~p~~r~~a~~~a~aiAEyfrd~Gk~VLl~~Dsltr~A~A~REisl~~gepP~~~GYppsvf~~l~~Ll 302 (451)
T PRK05688 223 KRSVVVASPADDAPLMRLRAAMYCTRIAEYFRDKGKNVLLLMDSLTRYAQAQREIALAIGEPPATKGYPPSVFAKLPKLV 302 (451)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 30589833888987999999987655899998679825999705577788888899875899876687844887737888
Q ss_pred HCCCCCCC-CCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHHHHH
Q ss_conf 22577777-78500121120126765541388988522660789808788479997405335422101551999999999
Q gi|254780810|r 305 GAARNIKE-GGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTRKEDLLVERQDLQKV 383 (423)
Q Consensus 305 ~~ar~~~~-~Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR~~~~l~~~~~~~~~ 383 (423)
T Consensus 303 ERag~~~~g~GSITal~tVlv~-gdD~~dPi~d~~~silDGhIvLsr~la~~G~yPAIDvl~SvSRvm~~i~~~~h~~~a 381 (451)
T PRK05688 303 ERAGNAEPGGGSITAFYTVLSE-GDDQQDPIADSARGVLDGHIVLSRRLAEEGHYPAIDIEASISRVMPQVVDPEHLRRA 381 (451)
T ss_pred HHHCCCCCCCCCEEEEEEEECC-CCCCCCCCHHHHHHHCCCEEEECHHHHHCCCCCCCCCCCCHHHCCHHHCCHHHHHHH
T ss_conf 6413799999220164677503-887677733445655062599848788669999828752665423333129999999
Q ss_pred HHHHHHHHCCCCHHHHHHHH
Q ss_conf 99999961269378999999
Q gi|254780810|r 384 FMLRRIVSSMNSSDAIEFLI 403 (423)
Q Consensus 384 ~~~r~~l~~~~~~e~~~~l~ 403 (423)
T Consensus 382 ~~~r~~la~Y~e~~dLi~~g 401 (451)
T PRK05688 382 QRFKQLWSRYQQSRDLISVG 401 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999868889999985