HHsearch alignment for GI: 254780810 and conserved domain: PRK05688

>PRK05688 fliI flagellum-specific ATP synthase; Validated.
Probab=100.00  E-value=0  Score=610.56  Aligned_cols=326  Identities=21%  Similarity=0.231  Sum_probs=306.6

Q ss_pred             CCCCCCCCCCEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEECCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCC
Q ss_conf             48666655604601000012212598799988624688876300022225568878851244300020001122343247
Q gi|254780810|r   73 ANYLAGPDDIYVSPSQIKSFSLKTGDTVEGSIRAPREGERYFALLKVNAINFDVPERVRNKIHFDNLTPLYPDKRFNMEL  152 (423)
Q Consensus        73 ~~yl~~~~DiyVs~slir~f~Lr~GD~V~g~~r~~~~~~~~~~L~rV~~vnG~~~d~~~~~~~f~~l~p~~p~~~i~le~  152 (423)
T Consensus        67 aEVVgf~~~~v~l~p~g~~~Gi~~G~~V~~~g~~~~VpVG~~lLGRVvd~lG~PlDg~g~i~~~~~~p~~~~~p~pl~R~  146 (451)
T PRK05688         67 AEVMGFSGDKVYLMPVGSVAGIAPGARVVPLADTGRLPMGMSMLGRVLDGAGRALDGKGGMKAEDWVPMDGPTINPLNRD  146 (451)
T ss_pred             EEEEEECCCEEEEEECCCCCCCCCCCEEEECCCCCEEECCCCCCCCEECCCCCCCCCCCCCCCCCEEECCCCCCCHHHCC
T ss_conf             99922549979999887877889999999689987777582535888887764268999989873455668998835517


Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH------
Q ss_conf             78653213688899886551023122204877878999999999986118864699995087878999999840------
Q gi|254780810|r  153 NNPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV------  226 (423)
Q Consensus       153 ~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~------  226 (423)
T Consensus       147 ~i~epl~TGIraID~l~pigrGQR~gIfggsGvGKS~Ll~~i~r~~~ad----v~Vi~lIGERgrEv~efi~~~l~~~~~  222 (451)
T PRK05688        147 PISEPLDVGIRSINGLLTVGRGQRLGLFAGTGVGKSVLLGMMTRFTEAD----IIVVGLIGERGREVKEFIEHILGEEGL  222 (451)
T ss_pred             CCCCCEECCCEEEECCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCC----EEEEEEEEEEHHHHHHHHHHHHHCCCC
T ss_conf             8786200384688454672467564210488986899999998852798----699996127759999999998515674


Q ss_pred             -CCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHCHHHH
Q ss_conf             -342782366788889999999999999999977992899981638987762001366777677-752024665046875
Q gi|254780810|r  227 -QGEVISSTFDESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILT-GGVDANALQRPKRFF  304 (423)
Q Consensus       227 -~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~-gg~~~~~l~~~~~~~  304 (423)
T Consensus       223 ~~svvV~atsd~~p~~r~~a~~~a~aiAEyfrd~Gk~VLl~~Dsltr~A~A~REisl~~gepP~~~GYppsvf~~l~~Ll  302 (451)
T PRK05688        223 KRSVVVASPADDAPLMRLRAAMYCTRIAEYFRDKGKNVLLLMDSLTRYAQAQREIALAIGEPPATKGYPPSVFAKLPKLV  302 (451)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             30589833888987999999987655899998679825999705577788888899875899876687844887737888


Q ss_pred             HCCCCCCC-CCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHHHHH
Q ss_conf             22577777-78500121120126765541388988522660789808788479997405335422101551999999999
Q gi|254780810|r  305 GAARNIKE-GGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTRKEDLLVERQDLQKV  383 (423)
Q Consensus       305 ~~ar~~~~-~Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR~~~~l~~~~~~~~~  383 (423)
T Consensus       303 ERag~~~~g~GSITal~tVlv~-gdD~~dPi~d~~~silDGhIvLsr~la~~G~yPAIDvl~SvSRvm~~i~~~~h~~~a  381 (451)
T PRK05688        303 ERAGNAEPGGGSITAFYTVLSE-GDDQQDPIADSARGVLDGHIVLSRRLAEEGHYPAIDIEASISRVMPQVVDPEHLRRA  381 (451)
T ss_pred             HHHCCCCCCCCCEEEEEEEECC-CCCCCCCCHHHHHHHCCCEEEECHHHHHCCCCCCCCCCCCHHHCCHHHCCHHHHHHH
T ss_conf             6413799999220164677503-887677733445655062599848788669999828752665423333129999999


Q ss_pred             HHHHHHHHCCCCHHHHHHHH
Q ss_conf             99999961269378999999
Q gi|254780810|r  384 FMLRRIVSSMNSSDAIEFLI  403 (423)
Q Consensus       384 ~~~r~~l~~~~~~e~~~~l~  403 (423)
T Consensus       382 ~~~r~~la~Y~e~~dLi~~g  401 (451)
T PRK05688        382 QRFKQLWSRYQQSRDLISVG  401 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999868889999985