HHsearch alignment for GI: 254780810 and conserved domain: PRK06002
>PRK06002 fliI flagellum-specific ATP synthase; Validated.
Probab=100.00 E-value=0 Score=580.26 Aligned_cols=354 Identities=20% Similarity=0.198 Sum_probs=311.8
Q ss_pred HHHHHHHHCCCEEEEEEE---------EEEECCCCEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEEEECCCC
Q ss_conf 999875205874899999---------85404770267504548666655604601000012212598799988624688
Q gi|254780810|r 40 SILKVLSGRDVEIIGEGV---------IEVLQDGFGFLRSPDANYLAGPDDIYVSPSQIKSFSLKTGDTVEGSIRAPREG 110 (423)
Q Consensus 40 ~Il~~~~~~~g~~~~eGv---------LEIl~dGyGFLR~~~~~yl~~~~DiyVs~slir~f~Lr~GD~V~g~~r~~~~~ 110 (423)
T Consensus 26 ~~G~V~~V~g~i~~v~GL~~~~~~Ge~~~i~~~~-~~~~---aeVv~~~~~~v~l~p~g~~~gi~~G~~V~~tg-~l~v~ 100 (450)
T PRK06002 26 IGGTVSEVTPSHYRVRGLSRFVRLGDRVAIRSDG-GTQL---GEVVRVDEDGVLVKPFEPRIPAGLGAAVFRKG-PLRIR 100 (450)
T ss_pred EEEEEEEEECCEEEEEECCCCCCCCCEEEEECCC-CCEE---EEEEEEECCCEEEEECCCCCCCCCCCEEEECC-CEEEC
T ss_conf 5689999938189999886667779889992799-7179---99998637818999876866688999898479-80444
Q ss_pred CCCCCCEEECCCCCCCHHHHHCCCCH-HHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHH
Q ss_conf 87630002222556887885124430-00200011223432477865321368889988655102312220487787899
Q gi|254780810|r 111 ERYFALLKVNAINFDVPERVRNKIHF-DNLTPLYPDKRFNMELNNPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTI 189 (423)
Q Consensus 111 ~~~~~L~rV~~vnG~~~d~~~~~~~f-~~l~p~~p~~~i~le~~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ 189 (423)
T Consensus 101 vg~~lLGRVvD~lG~PlDgkgpl~~~~~~~pi~~~~p~~~~R~~i~epL~TGIkaID~l~pigrGQR~gIfgg~GvGKTt 180 (450)
T PRK06002 101 PDPSWKGRVINALGEPIDGKGPLAPGTRPMSIDATAPPAMRRARVDTPLRTGVRVIDIFTPLCAGQRIGIFAGSGVGKST 180 (450)
T ss_pred CCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHCCCCCCCEEEECCCCCCCHHH
T ss_conf 68000478737888657899998877613515689968121278887663103133421460148777742689998759
Q ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH------CCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 9999999986118864699995087878999999840------3427823667888899999999999999999779928
Q gi|254780810|r 190 LLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV------QGEVISSTFDESAARHVQVAEMVIAKAKCLVEYGLDV 263 (423)
Q Consensus 190 ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~------~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dV 263 (423)
T Consensus 181 Ll~~i~~~~~~d----~vV~~lIGeRgrEv~ef~e~~l~~~l~~svvV~atsd~~p~~r~~a~~~a~aiAEyfrd~G~~V 256 (450)
T PRK06002 181 LLAMLARADAFD----TVVVALVGERGREVREFLEDTLADHLSKAVAVVATGDESPMMRRLAPKTATAIAEYFRDRGENV 256 (450)
T ss_pred HHHHHHHHCCCC----EEEEEEEEEEHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCE
T ss_conf 999998625898----7999986474899999999876422000599970588982887655655443799999679967
Q ss_pred EEEEECHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHCHHHHHCCCC-CCCCCCCEEEEEEEECCCCCCCCHHHHHHHHC
Q ss_conf 99981638987762001366777677-75202466504687522577-77778500121120126765541388988522
Q gi|254780810|r 264 VILLDSITRLCRAYNVLMPSSGKILT-GGVDANALQRPKRFFGAARN-IKEGGSLTIIGTALVDTGSRMDEVIFEEFKGT 341 (423)
Q Consensus 264 ll~~DslTR~ArA~~~~~~~~g~~~~-gg~~~~~l~~~~~~~~~ar~-~~~~Gs~T~~~t~lvetg~~~d~~i~~~~~~~ 341 (423)
T Consensus 257 Lli~DslTr~A~A~REisl~~gepP~r~gYp~~vf~~l~~LlERag~~~~~~GSITal~~V~~~-~dD~~~pI~d~~~si 335 (450)
T PRK06002 257 LLIVDSVTRFAHAAREVALAAGEPPVARGYPPSVFSELPRLLERAGPGAEGGGSITGIFSVLVD-GDDHNDPVADSIRGT 335 (450)
T ss_pred EEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEC-CCCCCCCHHHHHHHH
T ss_conf 9998261788889999998758999756778327766068887622577787306888888713-887677578878677
Q ss_pred CCCEEEEEHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 66078980878847999740533542210155199999999999999961269378999999
Q gi|254780810|r 342 GNSEIVLERKIADKRIFPAMDIIKSGTRKEDLLVERQDLQKVFMLRRIVSSMNSSDAIEFLI 403 (423)
Q Consensus 342 ~d~~i~L~r~la~~~~~PAId~~~S~sR~~~~l~~~~~~~~~~~~r~~l~~~~~~e~~~~l~ 403 (423)
T Consensus 336 lDGhIvLsr~la~~G~~PAIDv~~SvSRv~~~~~~~~~~~~a~~~r~~la~y~e~~dli~~g 397 (450)
T PRK06002 336 LDGHIVLDRAIAEQGRYPAVDPLASISRLAKHVWTPEQRKLVRRLKSMIARFEETRDLRLMG 397 (450)
T ss_pred CCEEEEECHHHHHCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 35499984889867999972887342017712242999999999999999777789999975