HHsearch alignment for GI: 254780810 and conserved domain: PRK06067

>PRK06067 flagellar accessory protein FlaH; Validated.
Probab=98.35  E-value=3.7e-06  Score=59.67  Aligned_cols=185  Identities=19%  Similarity=0.216  Sum_probs=108.1

Q ss_pred             CCCCHHHHHHHHHHH--HHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH-------
Q ss_conf             532136888998865--51023122204877878999999999986118864699995087878999999840-------
Q gi|254780810|r  156 ENKDISSRVIDLIAP--IGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV-------  226 (423)
Q Consensus       156 ~p~~~~~~~id~~~p--ig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~-------  226 (423)
T Consensus        12 e~i~tGi~~lD~~l~GG~p~g~~~li~G~~G~GKt~~~~~f~~~~~~~--g~~~~~~~~ee~~~~~~~~~~~~g~dl~~~   89 (241)
T PRK06067         12 EIISTGNEEIDRKLGGGIPFGSLILIEGENDTGKSVLSQQFVWGALNQ--GKRGLAITTENTSKSYLKQMESLKLDISDF   89 (241)
T ss_pred             CCCCCCCHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC--CCEEEEEEECCCHHHHHHHHHHCCCCHHHH
T ss_conf             525668755786506997799089998079988799999999999867--982999994289999999999839985999


Q ss_pred             --CCE--EE---ECCCCCCHHHHHHHHHHHHHHHHHHHH-CCCCEEEEEECHHHHHHHHHCCCCCCCCCCCCCCCHHHHH
Q ss_conf             --342--78---236678888999999999999999997-7992899981638987762001366777677752024665
Q gi|254780810|r  227 --QGE--VI---SSTFDESAARHVQVAEMVIAKAKCLVE-YGLDVVILLDSITRLCRAYNVLMPSSGKILTGGVDANALQ  298 (423)
Q Consensus       227 --~~~--vv---~st~d~~~~~~~~~a~~a~~~a~~~~e-~G~dVll~~DslTR~ArA~~~~~~~~g~~~~gg~~~~~l~  298 (423)
T Consensus        90 ~~~G~L~i~~~~~~~~~~~~~----~~~~ll~~l~~~v~~~~~~~-vVIDSls~l~~~~~~~~----------~-~~~l~  153 (241)
T PRK06067         90 FIWGYLRIFPLNTEGFEWNSE----LAEKLLDLIIEFIKRRREEV-IIIDSLTIFATYASEDD----------V-LNFFT  153 (241)
T ss_pred             HHCCCCEEEECCCCCCCCCHH----HHHHHHHHHHHHHHHHCCCE-EEECCHHHHHCCCCHHH----------H-HHHHH
T ss_conf             866970578324111342155----68999999999999719989-99928017541388899----------9-99999


Q ss_pred             HCHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCC-CCC
Q ss_conf             04687522577777785001211201267655413889885226607898087884799974053354-221
Q gi|254780810|r  299 RPKRFFGAARNIKEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKS-GTR  369 (423)
Q Consensus       299 ~~~~~~~~ar~~~~~Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S-~sR  369 (423)
T Consensus       154 ~l~~l~-------~~g-~tvllt~~-~--~~~~~~~~~~i~~vaD~vI~Lr~~~~~g~~~R~L~V~K~RGs~  214 (241)
T PRK06067        154 ECKNLC-------DNG-KTILITLH-P--YAFSEDTLVRIRSICDVHLKLRKEQVGDRYVKVLEVVKLRGAR  214 (241)
T ss_pred             HHHHHH-------HCC-CEEEEEEC-C--CCCCCCCCCCEEEEEEEEEEEEEEEECCEEEEEEEEEEECCCC
T ss_conf             999999-------689-88999905-6--7647664312489989999958784399999999999915998