HHsearch alignment for GI: 254780810 and conserved domain: PRK06067
>PRK06067 flagellar accessory protein FlaH; Validated.
Probab=98.35 E-value=3.7e-06 Score=59.67 Aligned_cols=185 Identities=19% Similarity=0.216 Sum_probs=108.1
Q ss_pred CCCCHHHHHHHHHHH--HHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH-------
Q ss_conf 532136888998865--51023122204877878999999999986118864699995087878999999840-------
Q gi|254780810|r 156 ENKDISSRVIDLIAP--IGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV------- 226 (423)
Q Consensus 156 ~p~~~~~~~id~~~p--ig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~------- 226 (423)
T Consensus 12 e~i~tGi~~lD~~l~GG~p~g~~~li~G~~G~GKt~~~~~f~~~~~~~--g~~~~~~~~ee~~~~~~~~~~~~g~dl~~~ 89 (241)
T PRK06067 12 EIISTGNEEIDRKLGGGIPFGSLILIEGENDTGKSVLSQQFVWGALNQ--GKRGLAITTENTSKSYLKQMESLKLDISDF 89 (241)
T ss_pred CCCCCCCHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC--CCEEEEEEECCCHHHHHHHHHHCCCCHHHH
T ss_conf 525668755786506997799089998079988799999999999867--982999994289999999999839985999
Q ss_pred --CCE--EE---ECCCCCCHHHHHHHHHHHHHHHHHHHH-CCCCEEEEEECHHHHHHHHHCCCCCCCCCCCCCCCHHHHH
Q ss_conf --342--78---236678888999999999999999997-7992899981638987762001366777677752024665
Q gi|254780810|r 227 --QGE--VI---SSTFDESAARHVQVAEMVIAKAKCLVE-YGLDVVILLDSITRLCRAYNVLMPSSGKILTGGVDANALQ 298 (423)
Q Consensus 227 --~~~--vv---~st~d~~~~~~~~~a~~a~~~a~~~~e-~G~dVll~~DslTR~ArA~~~~~~~~g~~~~gg~~~~~l~ 298 (423)
T Consensus 90 ~~~G~L~i~~~~~~~~~~~~~----~~~~ll~~l~~~v~~~~~~~-vVIDSls~l~~~~~~~~----------~-~~~l~ 153 (241)
T PRK06067 90 FIWGYLRIFPLNTEGFEWNSE----LAEKLLDLIIEFIKRRREEV-IIIDSLTIFATYASEDD----------V-LNFFT 153 (241)
T ss_pred HHCCCCEEEECCCCCCCCCHH----HHHHHHHHHHHHHHHHCCCE-EEECCHHHHHCCCCHHH----------H-HHHHH
T ss_conf 866970578324111342155----68999999999999719989-99928017541388899----------9-99999
Q ss_pred HCHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCC-CCC
Q ss_conf 04687522577777785001211201267655413889885226607898087884799974053354-221
Q gi|254780810|r 299 RPKRFFGAARNIKEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKS-GTR 369 (423)
Q Consensus 299 ~~~~~~~~ar~~~~~Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S-~sR 369 (423)
T Consensus 154 ~l~~l~-------~~g-~tvllt~~-~--~~~~~~~~~~i~~vaD~vI~Lr~~~~~g~~~R~L~V~K~RGs~ 214 (241)
T PRK06067 154 ECKNLC-------DNG-KTILITLH-P--YAFSEDTLVRIRSICDVHLKLRKEQVGDRYVKVLEVVKLRGAR 214 (241)
T ss_pred HHHHHH-------HCC-CEEEEEEC-C--CCCCCCCCCCEEEEEEEEEEEEEEEECCEEEEEEEEEEECCCC
T ss_conf 999999-------689-88999905-6--7647664312489989999958784399999999999915998