HHsearch alignment for GI: 254780810 and conserved domain: PRK06315
>PRK06315 type III secretion system ATPase; Provisional.
Probab=100.00 E-value=0 Score=599.47 Aligned_cols=325 Identities=19% Similarity=0.194 Sum_probs=296.5
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEECCCCCCCHHHH--HCCCCH-HHCCCCCCCCCCCC
Q ss_conf 866665560460100001221259879998862468887630002222556887885--124430-00200011223432
Q gi|254780810|r 74 NYLAGPDDIYVSPSQIKSFSLKTGDTVEGSIRAPREGERYFALLKVNAINFDVPERV--RNKIHF-DNLTPLYPDKRFNM 150 (423)
Q Consensus 74 ~yl~~~~DiyVs~slir~f~Lr~GD~V~g~~r~~~~~~~~~~L~rV~~vnG~~~d~~--~~~~~f-~~l~p~~p~~~i~l 150 (423)
T Consensus 61 EVVgf~~~~~~l~p~~~~~Gi~~G~~V~~~g~~~~vpvg~~lLGRViD~~G~PiDg~~~gp~~~~~~~~pi~~~~p~p~~ 140 (442)
T PRK06315 61 EVVGFTQNFVFLSPLGELTGVSPSSEVIPTGLPLHIRAGNGLLGRVLNGLGEPIDTETKGPLENVDETYPIFRAPPDPLH 140 (442)
T ss_pred EEEEECCCEEEEEECCCCCCCCCCCEEEECCCCCEEECCCCCCCCEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHH
T ss_conf 99998499799998778767899999996899877872715137888888776678777887677631132478969343
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH----
Q ss_conf 4778653213688899886551023122204877878999999999986118864699995087878999999840----
Q gi|254780810|r 151 ELNNPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV---- 226 (423)
Q Consensus 151 e~~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~---- 226 (423)
T Consensus 141 R~~i~epl~TGIraID~llpig~GQR~gIfagsGvGKs~Ll~~i~~~~~~--ad-v~V~~lIGeRgrEv~efie~~~~~~ 217 (442)
T PRK06315 141 RAKLRTILSTGVRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEE--AD-VNVIALIGERGREVREFIEGDLGEE 217 (442)
T ss_pred HCCCCCCCCCCCEEECCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHCC--CC-CEEEEEECCCCHHHHHHHHHHHCCC
T ss_conf 07878753368530011277023777640389999888999999974403--89-3499995511379999999752014
Q ss_pred ---CCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHCHH
Q ss_conf ---342782366788889999999999999999977992899981638987762001366777677-7520246650468
Q gi|254780810|r 227 ---QGEVISSTFDESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILT-GGVDANALQRPKR 302 (423)
Q Consensus 227 ---~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~-gg~~~~~l~~~~~ 302 (423)
T Consensus 218 ~l~rsvvV~atsd~p~~~R~~a~~~A~aiAEyFrd~G~~VLl~~DslTR~A~A~REi~l~~gepP~~~GYppsvf~~l~~ 297 (442)
T PRK06315 218 GMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLAAGEPPARAGYTPSVFSTLPK 297 (442)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
T ss_conf 52133999617999878875558877789999986899489994370288889999997558999877868339988788
Q ss_pred HHHCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHHHH
Q ss_conf 75225777777850012112012676554138898852266078980878847999740533542210155199999999
Q gi|254780810|r 303 FFGAARNIKEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTRKEDLLVERQDLQK 382 (423)
Q Consensus 303 ~~~~ar~~~~~Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR~~~~l~~~~~~~~ 382 (423)
T Consensus 298 l~ERag~~~-~GSITa~~tVl~~-gdD~~dPi~d~~~~ilDGhivLsr~la~~g~yPAIDvl~S~SR~~~~v~~~~h~~~ 375 (442)
T PRK06315 298 LLERAGASD-KGTITAFYTVLVA-GDDMNEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRI 375 (442)
T ss_pred HHHHCCCCC-CCCEEEEEEEECC-CCCCCCCCHHHHHHHCCCEEEECHHHHHCCCCCCCCCCCCHHHCCCCCCCHHHHHH
T ss_conf 887224889-9745653346515-88767873677787606169985879866999971875045336611057999999
Q ss_pred HHHHHHHHHCCCCHHHHHHHH
Q ss_conf 999999961269378999999
Q gi|254780810|r 383 VFMLRRIVSSMNSSDAIEFLI 403 (423)
Q Consensus 383 ~~~~r~~l~~~~~~e~~~~l~ 403 (423)
T Consensus 376 a~~~r~~la~y~e~edli~iG 396 (442)
T PRK06315 376 IGKAREVLAKYKANEMLIRIG 396 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999999889999999962