HHsearch alignment for GI: 254780810 and conserved domain: PRK06793
>PRK06793 fliI flagellum-specific ATP synthase; Validated.
Probab=100.00 E-value=0 Score=602.40 Aligned_cols=356 Identities=22% Similarity=0.231 Sum_probs=319.4
Q ss_pred HHHHHHHHHHCCCEEEEEEE------EEEECCCCEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEEEECCCCC
Q ss_conf 99999875205874899999------854047702675045486666556046010000122125987999886246888
Q gi|254780810|r 38 MFSILKVLSGRDVEIIGEGV------IEVLQDGFGFLRSPDANYLAGPDDIYVSPSQIKSFSLKTGDTVEGSIRAPREGE 111 (423)
Q Consensus 38 I~~Il~~~~~~~g~~~~eGv------LEIl~dGyGFLR~~~~~yl~~~~DiyVs~slir~f~Lr~GD~V~g~~r~~~~~~ 111 (423)
T Consensus 19 ~~~~GrV~~V~g~~i~a~G~~~~iGe~c~i~~-~~~----~aeVvgf~~~~v~l~p~~~~~gi~~G~~V~~~g~~~~vpV 93 (432)
T PRK06793 19 YTKVGKVHSVQEQFFVAKGPKAKIGDVCFVGE-HNV----LCEVIAIEKENNMLLPFEQTEKVCYGDSVTLIAEDVVIPR 93 (432)
T ss_pred CEEEEEEEEEECEEEEEEECCCCCCCEEEECC-CCE----EEEEEEEECCEEEEEECCCCCCCCCCCEEEECCCCCEEEC
T ss_conf 44788999993519999937987589899868-981----8999998589399998878778899999997999757888
Q ss_pred CCCCCEEECCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHH
Q ss_conf 76300022225568878851244300020001122343247786532136888998865510231222048778789999
Q gi|254780810|r 112 RYFALLKVNAINFDVPERVRNKIHFDNLTPLYPDKRFNMELNNPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILL 191 (423)
Q Consensus 112 ~~~~L~rV~~vnG~~~d~~~~~~~f~~l~p~~p~~~i~le~~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll 191 (423)
T Consensus 94 g~~lLGRViD~lG~PlD~~~~~~~~~~~~~~~~~~np~~R~~i~e~l~TGIraID~l~pigrGQR~gIfg~sGvGKstLl 173 (432)
T PRK06793 94 GNHLLGKVLSANGEVLNEEAENIPLQKIKLDAPPIHAFEREEITDVFETGIKSIDSMLTIGIGQKIGIFAGSGVGKSTLL 173 (432)
T ss_pred CCCCCCCEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCEEEEECCCCCCHHHHH
T ss_conf 95632877578966158999888774344328998830137778740048731000156124626666326898789999
Q ss_pred HHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH-------CCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 99999986118864699995087878999999840-------34278236678888999999999999999997799289
Q gi|254780810|r 192 QNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV-------QGEVISSTFDESAARHVQVAEMVIAKAKCLVEYGLDVV 264 (423)
Q Consensus 192 ~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~-------~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dVl 264 (423)
T Consensus 174 ~~i~~~~~ad----v~Vi~lIGeRgrEv~efi~~~l~~~gl~~tvvV~atsd~p~~~r~~a~~~a~aiAEyfrd~G~~VL 249 (432)
T PRK06793 174 GMIAKNAKAD----INVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVL 249 (432)
T ss_pred HHHHHHCCCC----CEEEEEEEEECHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 9998724578----657999888627999999998644675212788725889989999887551237889986699689
Q ss_pred EEEECHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCC
Q ss_conf 99816389877620013667776777520246650468752257777778500121120126765541388988522660
Q gi|254780810|r 265 ILLDSITRLCRAYNVLMPSSGKILTGGVDANALQRPKRFFGAARNIKEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNS 344 (423)
Q Consensus 265 l~~DslTR~ArA~~~~~~~~g~~~~gg~~~~~l~~~~~~~~~ar~~~~~Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d~ 344 (423)
T Consensus 250 li~DslTr~A~A~REisl~~gepP~~Gy~p~~~s~l~~LlERag~~~-~GSITa~~tVl~~-gdD~~~pI~d~~~silDG 327 (432)
T PRK06793 250 LMMDSVTRFADARRSVDIAVKELPIGGKTLLMESYMKKLLERSGKTQ-KGSITGIYTVLVD-GDDLNGPVPDLARGILDG 327 (432)
T ss_pred EEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCC-CCCEEEEEEEEEC-CCCCCCCCHHHHHHHCCE
T ss_conf 99456788888874778853799989888645878999997540368-8635788899832-886678715767766253
Q ss_pred EEEEEHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 789808788479997405335422101551999999999999999612693789999999
Q gi|254780810|r 345 EIVLERKIADKRIFPAMDIIKSGTRKEDLLVERQDLQKVFMLRRIVSSMNSSDAIEFLID 404 (423)
Q Consensus 345 ~i~L~r~la~~~~~PAId~~~S~sR~~~~l~~~~~~~~~~~~r~~l~~~~~~e~~~~l~~ 404 (423)
T Consensus 328 hIvLsr~La~~g~yPAIDvl~SvSRv~~~v~~~~h~~~a~~~r~~la~y~e~edli~iG~ 387 (432)
T PRK06793 328 HIVLKRELATLSHYPAISVLDSVSRIMEEIVSPNHWQLANEMRKILSIYKENELYFKLGT 387 (432)
T ss_pred EEEECHHHHHCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 799967588669999728851542262545039999999999999999999999998479